sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-3Z-A93Z-01 10 15154934 15154934 A G NMT2 Missense_Mutation p.L400P 0.23 deleterious(0) possibly_damaging(0.847) TCGA-3Z-A93Z-01 10 81067298 81067298 G A ZMIZ1 Silent p.E935E 0.23 TCGA-3Z-A93Z-01 11 100845194 100845194 T C ARHGAP42 Missense_Mutation p.F572S 0.23 deleterious(0) probably_damaging(0.996) TCGA-3Z-A93Z-01 11 36597064 36597064 G A RAG1 Missense_Mutation p.R737H 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-3Z-A93Z-01 11 7064166 7064166 A T NLRP14 Missense_Mutation p.L303F 0.06 deleterious(0) probably_damaging(1) TCGA-3Z-A93Z-01 11 71807794 71807794 C T LRTOMT Intron 0.14 TCGA-3Z-A93Z-01 12 133281245 133281245 A G PXMP2 Missense_Mutation p.Y187C 0.15 deleterious(0.02) probably_damaging(0.962) TCGA-3Z-A93Z-01 12 13715642 13715645 CCCT - GRIN2B 3'UTR 0.11 TCGA-3Z-A93Z-01 12 15034881 15034881 T A MGP 3'UTR 0.27 TCGA-3Z-A93Z-01 12 52942544 52942544 G A KRT71 Nonsense_Mutation p.Q252* 0.14 TCGA-3Z-A93Z-01 12 52946720 52946720 G T KRT71 Missense_Mutation p.L48I 0.12 deleterious(0) possibly_damaging(0.529) TCGA-3Z-A93Z-01 12 53069039 53069039 A T KRT1 Missense_Mutation p.S625T 0.26 deleterious_low_confidence(0.05) unknown(0) TCGA-3Z-A93Z-01 13 25671725 25671725 T - PABPC3 Frame_Shift_Del p.S464Lfs*77 0.15 TCGA-3Z-A93Z-01 13 28919644 28919644 T C FLT1 Missense_Mutation p.T765A 0.07 deleterious(0.04) probably_damaging(0.917) TCGA-3Z-A93Z-01 13 77754306 77754306 C T MYCBP2 Missense_Mutation p.A1659T 0.21 probably_damaging(0.987) TCGA-3Z-A93Z-01 14 31642573 31642573 T G HECTD1 Missense_Mutation p.R315S 0.20 deleterious(0) probably_damaging(0.994) TCGA-3Z-A93Z-01 14 36064892 36064903 AATATTACCTCT - RALGAPA1 In_Frame_Del p.E1877_F1880del 0.15 TCGA-3Z-A93Z-01 14 54878247 54878247 C T CDKN3 Missense_Mutation p.T80I 0.06 deleterious(0) probably_damaging(0.999) TCGA-3Z-A93Z-01 14 57747136 57747136 C T AP5M1 Missense_Mutation p.S315F 0.21 deleterious(0.03) possibly_damaging(0.893) TCGA-3Z-A93Z-01 14 65210053 65210053 T A PLEKHG3 Missense_Mutation p.C1042S 0.21 tolerated(0.15) possibly_damaging(0.879) TCGA-3Z-A93Z-01 15 39882210 39882210 T C THBS1 Missense_Mutation p.Y711H 0.15 tolerated(0.09) probably_damaging(0.968) TCGA-3Z-A93Z-01 15 43932691 43932691 A T CATSPER2 Nonsense_Mutation p.L131* 0.18 TCGA-3Z-A93Z-01 15 50519259 50519259 G C SLC27A2 Missense_Mutation p.K447N 0.11 deleterious(0.04) probably_damaging(0.996) TCGA-3Z-A93Z-01 15 55652815 55652815 G A CCPG1 Silent p.L386L 0.21 TCGA-3Z-A93Z-01 15 74883509 74883509 A G ARID3B Missense_Mutation p.Y300C 0.17 deleterious(0) probably_damaging(1) TCGA-3Z-A93Z-01 16 4387389 4387389 T C GLIS2 Missense_Mutation p.L480P 0.24 deleterious_low_confidence(0.04) unknown(0) TCGA-3Z-A93Z-01 16 67196865 67196865 C T FBXL8 Silent p.A89A 0.27 TCGA-3Z-A93Z-01 17 1083121 1083121 G A ABR 5'UTR 0.21 TCGA-3Z-A93Z-01 17 17207114 17207114 C A NT5M Missense_Mutation p.L84M 0.23 deleterious(0) benign(0.072) TCGA-3Z-A93Z-01 17 17207115 17207115 T G NT5M Missense_Mutation p.L84R 0.31 deleterious(0.01) possibly_damaging(0.572) TCGA-3Z-A93Z-01 17 37564023 37564023 T A MED1 Missense_Mutation p.D1484V 0.26 deleterious_low_confidence(0) unknown(0) TCGA-3Z-A93Z-01 17 56350263 56350263 G C MPO Missense_Mutation p.I546M 0.21 deleterious(0.01) possibly_damaging(0.586) TCGA-3Z-A93Z-01 17 74621405 74621405 G A ST6GALNAC1 3'UTR 0.19 TCGA-3Z-A93Z-01 17 80320534 80320534 A - TEX19 3'UTR 0.21 TCGA-3Z-A93Z-01 18 77477534 77477534 G T CTDP1 Splice_Site p.X690_splice 0.21 TCGA-3Z-A93Z-01 19 10445948 10445948 T C ICAM3 Missense_Mutation p.D244G 0.16 tolerated(0.05) possibly_damaging(0.673) TCGA-3Z-A93Z-01 19 48965390 48965390 G T KCNJ14 Missense_Mutation p.A137S 0.19 deleterious(0.03) probably_damaging(1) TCGA-3Z-A93Z-01 19 50713703 50713703 C - MYH14 Frame_Shift_Del p.L28Cfs*72 0.09 TCGA-3Z-A93Z-01 19 9296307 9296307 T A OR7D2 5'UTR 0.24 TCGA-3Z-A93Z-01 1 100379249 100379249 G A AGL Nonsense_Mutation p.W1372* 0.27 TCGA-3Z-A93Z-01 1 100379250 100379250 T A AGL Missense_Mutation p.C1373S 0.27 tolerated(0.29) benign(0.115) TCGA-3Z-A93Z-01 1 109795119 109795119 C T CELSR2 Silent p.N806N 0.07 TCGA-3Z-A93Z-01 1 154966226 154966226 A G LENEP Missense_Mutation p.Y48C 0.14 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-3Z-A93Z-01 1 156242186 156242186 A G SMG5 Missense_Mutation p.M213T 0.20 deleterious(0.01) benign(0.333) TCGA-3Z-A93Z-01 1 179079828 179079828 T G ABL2 Intron 0.22 TCGA-3Z-A93Z-01 1 183849936 183849936 T C RGL1 Splice_Site p.X239_splice 0.22 TCGA-3Z-A93Z-01 1 201291156 201291156 C T PKP1 Silent p.D487D 0.14 TCGA-3Z-A93Z-01 1 229602423 229602423 A C NUP133 Missense_Mutation p.I719M 0.24 deleterious(0.04) benign(0.084) TCGA-3Z-A93Z-01 1 46033814 46033814 C T AKR1A1 Missense_Mutation p.L173F 0.26 deleterious(0) possibly_damaging(0.791) TCGA-3Z-A93Z-01 1 6285026 6285026 T C ICMT 3'UTR 0.25 TCGA-3Z-A93Z-01 1 62976299 62976299 C T DOCK7 Missense_Mutation p.R1412K 0.18 deleterious(0) benign(0.183) TCGA-3Z-A93Z-01 1 89448869 89448869 T A RBMXL1 Missense_Mutation p.Y214F 0.23 deleterious(0.01) probably_damaging(0.944) TCGA-3Z-A93Z-01 1 9784151 9784151 G C PIK3CD Splice_Site p.X906_splice 0.28 TCGA-3Z-A93Z-01 20 25656271 25656271 T G ZNF337 Missense_Mutation p.K551N 0.33 deleterious(0) unknown(0) TCGA-3Z-A93Z-01 20 42907943 42907943 C T GDAP1L1 3'UTR 0.17 TCGA-3Z-A93Z-01 20 44520934 44520934 T C CTSA Missense_Mutation p.L128P 0.33 deleterious(0) probably_damaging(0.992) TCGA-3Z-A93Z-01 20 60963010 60963010 T G RPS21 Intron 0.31 TCGA-3Z-A93Z-01 22 19511487 19511487 T A CLDN5 Missense_Mutation p.T183S 0.17 tolerated(0.66) benign(0.034) TCGA-3Z-A93Z-01 22 19960301 19960301 C - ARVCF Frame_Shift_Del p.G867Afs*24 0.12 TCGA-3Z-A93Z-01 22 40661098 40661098 T G TNRC6B Missense_Mutation p.S288R 0.28 tolerated(0.1) benign(0.097) TCGA-3Z-A93Z-01 22 41863585 41863585 A T PHF5A Missense_Mutation p.V37E 0.17 tolerated(0.07) possibly_damaging(0.682) TCGA-3Z-A93Z-01 22 41925304 41925304 A G POLR3H Missense_Mutation p.W200R 0.21 deleterious(0) probably_damaging(1) TCGA-3Z-A93Z-01 22 50181435 50181435 G A BRD1 Intron 0.20 TCGA-3Z-A93Z-01 2 102504286 102504286 C G MAP4K4 Missense_Mutation p.T1128R 0.17 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-3Z-A93Z-01 2 141816514 141816514 G A LRP1B Missense_Mutation p.S449L 0.30 benign(0.118) TCGA-3Z-A93Z-01 2 238005475 238005475 C T COPS8 Silent p.A171A 0.25 TCGA-3Z-A93Z-01 2 37247966 37247966 T C HEATR5B Silent p.V1289V 0.35 TCGA-3Z-A93Z-01 2 74042943 74042943 G - C2orf78 Frame_Shift_Del p.V532Lfs*13 0.20 TCGA-3Z-A93Z-01 3 10188200 10188200 C A VHL Missense_Mutation p.H115N 0.27 deleterious(0) probably_damaging(0.993) TCGA-3Z-A93Z-01 3 151165650 151165650 C T IGSF10 Missense_Mutation p.E707K 0.22 tolerated(0.24) benign(0.01) TCGA-3Z-A93Z-01 3 195515862 195515862 C A MUC4 Missense_Mutation p.M863I 0.15 unknown(0) TCGA-3Z-A93Z-01 3 33437769 33437769 C T UBP1 Silent p.S425S 0.38 TCGA-3Z-A93Z-01 3 4810195 4810195 C A ITPR1 Missense_Mutation p.A1894D 0.31 tolerated(0.64) benign(0.177) TCGA-3Z-A93Z-01 4 113568225 113568225 A G LARP7 Silent p.K203K 0.20 TCGA-3Z-A93Z-01 4 169060730 169060730 G T ANXA10 Missense_Mutation p.R65L 0.20 deleterious(0) possibly_damaging(0.476) TCGA-3Z-A93Z-01 4 25370823 25370823 C A ZCCHC4 3'UTR 0.20 TCGA-3Z-A93Z-01 4 47625932 47625932 A C CORIN Silent p.L783L 0.23 TCGA-3Z-A93Z-01 4 77231074 77231074 G C FAM47E-STBD1 Missense_Mutation p.R333P 0.18 deleterious(0) probably_damaging(1) TCGA-3Z-A93Z-01 4 77231075 77231075 C A FAM47E-STBD1 Silent p.R333R 0.18 TCGA-3Z-A93Z-01 4 87643547 87643547 A - PTPN13 Frame_Shift_Del p.I524Lfs*3 0.13 TCGA-3Z-A93Z-01 5 131796410 131796410 C T C5orf56 Missense_Mutation p.S82L 0.36 tolerated_low_confidence(0.08) possibly_damaging(0.519) TCGA-3Z-A93Z-01 5 132387778 132387778 C A HSPA4 5'UTR 0.35 TCGA-3Z-A93Z-01 5 150036510 150036510 C G SYNPO 3'Flank 0.14 TCGA-3Z-A93Z-01 5 31429629 31429629 G C DROSHA Missense_Mutation p.L1057V 0.34 deleterious(0.05) benign(0.325) TCGA-3Z-A93Z-01 5 78415105 78415105 C A BHMT Missense_Mutation p.L64I 0.17 tolerated(0.08) benign(0.194) TCGA-3Z-A93Z-01 6 110146485 110146485 C A FIG4 3'UTR 0.14 TCGA-3Z-A93Z-01 6 111196345 111196345 C A AMD1 Missense_Mutation p.L13M 0.21 deleterious(0) probably_damaging(1) TCGA-3Z-A93Z-01 6 118596693 118596693 G C SLC35F1 Missense_Mutation p.E237Q 0.20 tolerated(0.4) benign(0.035) TCGA-3Z-A93Z-01 6 151790326 151790326 T A C6orf211 3'UTR 0.14 TCGA-3Z-A93Z-01 6 31730713 31730713 C T MSH5 3'Flank 0.18 TCGA-3Z-A93Z-01 6 33245448 33245448 G A B3GALT4 Silent p.L84L 0.11 TCGA-3Z-A93Z-01 6 33411160 33411160 G A SYNGAP1 Missense_Mutation p.G944D 0.07 tolerated(0.16) benign(0.229) TCGA-3Z-A93Z-01 6 36175166 36175166 G A BRPF3 Missense_Mutation p.R561Q 0.21 deleterious(0) possibly_damaging(0.666) TCGA-3Z-A93Z-01 6 54254661 54254661 T C TINAG Missense_Mutation p.S457P 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-3Z-A93Z-01 7 114582410 114582410 C T MDFIC Nonsense_Mutation p.Q168* 0.20 TCGA-3Z-A93Z-01 7 123267318 123267318 C T ASB15 Silent p.A284A 0.22 TCGA-3Z-A93Z-01 7 137569803 137569809 GAAGGAT - CREB3L2 Frame_Shift_Del p.Y401Lfs*22 0.15 TCGA-3Z-A93Z-01 7 155473581 155473581 T A RBM33 Missense_Mutation p.N182K 0.22 deleterious(0.03) probably_damaging(0.995) TCGA-3Z-A93Z-01 7 2552829 2552829 G T LFNG Missense_Mutation p.R29M 0.17 deleterious_low_confidence(0) benign(0) TCGA-3Z-A93Z-01 7 50563077 50563077 T A DDC Silent p.L305L 0.20 TCGA-3Z-A93Z-01 7 98658271 98658271 C G SMURF1 Missense_Mutation p.D52H 0.25 deleterious(0.02) possibly_damaging(0.648) TCGA-3Z-A93Z-01 7 99818179 99818179 C G PVRIG Missense_Mutation p.A160G 0.21 tolerated(0.09) benign(0.034) TCGA-3Z-A93Z-01 8 25364114 25364114 T A CDCA2 Missense_Mutation p.D644E 0.20 tolerated(0.15) probably_damaging(0.959) TCGA-3Z-A93Z-01 8 25364126 25364126 T A CDCA2 Missense_Mutation p.H648Q 0.18 tolerated(0.57) benign(0.008) TCGA-3Z-A93Z-01 8 27516483 27516483 C T SCARA3 Missense_Mutation p.R266C 0.21 deleterious(0) probably_damaging(0.991) TCGA-3Z-A93Z-01 8 38810183 38810183 A T PLEKHA2 Silent p.A221A 0.21 TCGA-3Z-A93Z-01 8 42958743 42958743 C T POMK Missense_Mutation p.P18S 0.05 tolerated_low_confidence(0.07) possibly_damaging(0.563) TCGA-3Z-A93Z-01 9 101530473 101530473 A C ANKS6 Missense_Mutation p.L678V 0.17 deleterious(0) possibly_damaging(0.829) TCGA-3Z-A93Z-01 9 139945766 139945766 G A ENTPD2 Missense_Mutation p.T148I 0.23 tolerated(0.1) benign(0.003) TCGA-3Z-A93Z-01 9 140729361 140729361 G A EHMT1 Missense_Mutation p.G1285S 0.24 tolerated(0.2) probably_damaging(0.999) TCGA-3Z-A93Z-01 9 2643866 2643866 A T VLDLR Nonsense_Mutation p.K325* 0.23 TCGA-3Z-A93Z-01 9 71396497 71396498 - G FAM122A 3'UTR 0.19 TCGA-3Z-A93Z-01 9 93375370 93375370 T G DIRAS2 3'UTR 0.27 TCGA-3Z-A93Z-01 X 135593328 135593328 G T HTATSF1 Missense_Mutation p.G475V 0.39 deleterious_low_confidence(0.02) benign(0.184) TCGA-3Z-A93Z-01 X 3241030 3241030 G A MXRA5 Missense_Mutation p.T899I 0.44 tolerated(0.49) benign(0.036) TCGA-3Z-A93Z-01 X 70443549 70443549 T C GJB1 5'UTR 0.48 TCGA-6D-AA2E-01 10 62648907 62648907 T C RHOBTB1 Silent p.K173K 0.07 TCGA-6D-AA2E-01 10 64573978 64573978 G C EGR2 Silent p.S140S 0.18 TCGA-6D-AA2E-01 11 122931997 122931997 G A HSPA8 Silent p.G12G 0.24 TCGA-6D-AA2E-01 11 66460043 66460043 G - SPTBN2 Frame_Shift_Del p.S1719Pfs*11 0.14 TCGA-6D-AA2E-01 13 52520522 52520522 G A ATP7B Silent p.S986S 0.24 TCGA-6D-AA2E-01 14 68268834 68268834 G A ZFYVE26 Missense_Mutation p.S534L 0.09 tolerated(0.45) benign(0.001) TCGA-6D-AA2E-01 14 68268835 68268835 A T ZFYVE26 Missense_Mutation p.S534T 0.09 tolerated(0.59) benign(0.003) TCGA-6D-AA2E-01 14 70246042 70246042 G T SLC10A1 Silent p.A201A 0.11 TCGA-6D-AA2E-01 15 43028927 43028927 C A CDAN1 Nonsense_Mutation p.E48* 0.29 TCGA-6D-AA2E-01 15 83876314 83876314 C T HDGFRP3 5'UTR 0.19 TCGA-6D-AA2E-01 16 19884114 19884114 G C GPRC5B Silent p.L18L 0.14 TCGA-6D-AA2E-01 16 20448609 20448609 G A ACSM5 Missense_Mutation p.E486K 0.05 deleterious(0) probably_damaging(0.995) TCGA-6D-AA2E-01 16 338041 338041 G C AXIN1 3'UTR 0.22 TCGA-6D-AA2E-01 17 16525719 16525739 CAAGTGTACAGTAAAGTCTGA - ZNF624 In_Frame_Del p.S821_L827del 0.11 TCGA-6D-AA2E-01 17 42089253 42089253 C G TMEM101 3'UTR 0.26 TCGA-6D-AA2E-01 17 5462559 5462559 C A NLRP1 Missense_Mutation p.R486M 0.05 deleterious(0) probably_damaging(0.998) TCGA-6D-AA2E-01 17 7329809 7329809 A G C17orf74 Missense_Mutation p.M167V 0.12 tolerated(1) benign(0.14) TCGA-6D-AA2E-01 18 8379271 8379271 G A PTPRM Missense_Mutation p.R1240H 0.16 tolerated(0.06) probably_damaging(1) TCGA-6D-AA2E-01 19 19414252 19414252 A - SUGP1 Frame_Shift_Del p.L223Cfs*19 0.17 TCGA-6D-AA2E-01 19 39410790 39410791 - TGGA SARS2 Splice_Site p.X199_splice 0.26 TCGA-6D-AA2E-01 19 41248497 41248497 C T C19orf54 Silent p.L299L 0.22 TCGA-6D-AA2E-01 19 56024402 56024402 C T SSC5D Missense_Mutation p.P937L 0.19 benign(0.022) TCGA-6D-AA2E-01 19 8615229 8615229 G A MYO1F Missense_Mutation p.P306S 0.06 deleterious(0.01) probably_damaging(0.959) TCGA-6D-AA2E-01 1 1221403 1221403 C A SCNN1D Nonsense_Mutation p.S219* 0.21 TCGA-6D-AA2E-01 1 155186268 155186268 G A MTX1 3'Flank 0.24 TCGA-6D-AA2E-01 1 211652547 211652547 C T RD3 Missense_Mutation p.R140H 0.32 deleterious(0.03) benign(0.092) TCGA-6D-AA2E-01 1 232941150 232941188 CTTCTCGTTTGCGGAGCCCGCGGCGGCGTTTCCTGGGGC GCTTT MAP10 Frame_Shift_Del p.S127Rfs*3 0.18 TCGA-6D-AA2E-01 1 24078983 24078983 A G TCEB3 Missense_Mutation p.I530M 0.05 tolerated(1) benign(0.002) TCGA-6D-AA2E-01 1 35656592 35656592 G T SFPQ Missense_Mutation p.S341Y 0.21 tolerated(0.29) probably_damaging(0.979) TCGA-6D-AA2E-01 1 39800751 39800751 T A MACF1 Intron 0.27 TCGA-6D-AA2E-01 20 1902091 1902091 C G SIRPA Missense_Mutation p.Q163E 0.19 tolerated(0.75) benign(0) TCGA-6D-AA2E-01 20 50419011 50419011 A T SALL4 5'UTR 0.14 TCGA-6D-AA2E-01 22 30951456 30951456 T C GAL3ST1 Silent p.Q252Q 0.12 TCGA-6D-AA2E-01 2 170101238 170101238 T C LRP2 Missense_Mutation p.N1132S 0.08 probably_damaging(0.993) TCGA-6D-AA2E-01 3 168838918 168838918 C T MECOM Missense_Mutation p.C230Y 0.22 deleterious(0) probably_damaging(1) TCGA-6D-AA2E-01 4 104640372 104640372 C T TACR3 Missense_Mutation p.G154D 0.33 deleterious(0) probably_damaging(0.999) TCGA-6D-AA2E-01 4 52860519 52860519 G T LRRC66 3'UTR 0.23 TCGA-6D-AA2E-01 5 154346486 154346486 T C MRPL22 3'UTR 0.39 TCGA-6D-AA2E-01 5 157170797 157170797 C T LSM11 Silent p.A13A 0.07 TCGA-6D-AA2E-01 5 52248322 52248322 C G ITGA1 3'UTR 0.19 TCGA-6D-AA2E-01 5 864458 864458 C T BRD9 3'UTR 0.21 TCGA-6D-AA2E-01 6 56484241 56484241 T C DST Intron 0.22 TCGA-6D-AA2E-01 7 149505720 149505720 C A SSPO RNA 0.07 TCGA-6D-AA2E-01 8 76476228 76476228 T G HNF4G Missense_Mutation p.L412R 0.25 tolerated(0.08) benign(0.288) TCGA-6D-AA2E-01 9 139343068 139343068 C G SEC16A Intron 0.22 TCGA-6D-AA2E-01 9 139343129 139343129 G A SEC16A Intron 0.27 TCGA-6D-AA2E-01 9 19089475 19089475 A G HAUS6 Silent p.R173R 0.04 TCGA-6D-AA2E-01 X 106093439 106093439 A C TBC1D8B Silent p.G674G 0.10 TCGA-6D-AA2E-01 X 30254004 30254004 G T MAGEB3 5'UTR 0.05 TCGA-6D-AA2E-01 X 57935449 57935449 C T ZXDA Missense_Mutation p.R469K 0.26 deleterious(0) probably_damaging(0.977) TCGA-A3-3308-01 10 105151997 105151997 T - USMG5 Frame_Shift_Del p.Y44Ffs*4 0.12 TCGA-A3-3308-01 10 121587100 121587100 T A INPP5F Silent p.S1069S 0.22 TCGA-A3-3308-01 10 85991773 85991773 C T LRIT1 Silent p.E594E 0.20 TCGA-A3-3308-01 10 89692949 89692949 T - PTEN Frame_Shift_Del p.L146* 0.22 TCGA-A3-3308-01 10 89712017 89712017 G A PTEN Splice_Site p.X212_splice 0.20 TCGA-A3-3308-01 11 57147060 57147060 C T PRG3 Silent p.R94R 0.20 TCGA-A3-3308-01 12 117672374 117672374 A T NOS1 Silent p.A1111A 0.13 TCGA-A3-3308-01 12 119909965 119909965 T C CCDC60 Silent p.L113L 0.21 TCGA-A3-3308-01 12 15822749 15822749 G A EPS8 Missense_Mutation p.T72I 0.15 deleterious(0) possibly_damaging(0.903) TCGA-A3-3308-01 12 49442951 49442951 A T KMT2D Missense_Mutation p.H1319Q 0.18 benign(0.132) TCGA-A3-3308-01 12 53880961 53880961 G T MAP3K12 Missense_Mutation p.P72H 0.18 tolerated(0.44) possibly_damaging(0.582) TCGA-A3-3308-01 12 57627609 57627609 G A SHMT2 Missense_Mutation p.E401K 0.23 deleterious(0) possibly_damaging(0.867) TCGA-A3-3308-01 12 82746875 82746875 T A CCDC59 3'UTR 0.22 TCGA-A3-3308-01 12 8802129 8802129 C T MFAP5 Missense_Mutation p.R126H 0.20 deleterious(0) probably_damaging(1) TCGA-A3-3308-01 13 25353868 25353868 T C RNF17 Silent p.L165L 0.24 TCGA-A3-3308-01 13 32944606 32944606 C G BRCA2 Missense_Mutation p.P2800R 0.10 deleterious(0) probably_damaging(1) TCGA-A3-3308-01 13 45914269 45914269 A G TPT1 Silent p.N51N 0.25 TCGA-A3-3308-01 13 76369561 76369561 G A LMO7 5'UTR 0.27 TCGA-A3-3308-01 14 24878537 24878537 G A NYNRIN Missense_Mutation p.A513T 0.17 tolerated_low_confidence(0.39) benign(0.014) TCGA-A3-3308-01 14 53118958 53118958 T G ERO1L Missense_Mutation p.K375T 0.19 deleterious(0) probably_damaging(1) TCGA-A3-3308-01 14 55448374 55448374 C G WDHD1 Missense_Mutation p.M649I 0.27 tolerated(0.05) benign(0.005) TCGA-A3-3308-01 14 71067337 71067337 G A MED6 Silent p.I6I 0.21 TCGA-A3-3308-01 15 85164518 85164519 - A ZSCAN2 Frame_Shift_Ins p.E366Rfs*7 0.23 TCGA-A3-3308-01 15 91025444 91025444 C T IQGAP1 Silent p.F1162F 0.19 TCGA-A3-3308-01 16 11773280 11773280 G T TXNDC11 Missense_Mutation p.A883D 0.22 deleterious(0) probably_damaging(0.996) TCGA-A3-3308-01 17 30986144 30986144 C T MYO1D Silent p.T778T 0.22 TCGA-A3-3308-01 17 80156290 80156290 T C CCDC57 Missense_Mutation p.N139S 0.25 tolerated(0.1) benign(0.202) TCGA-A3-3308-01 18 3155065 3155065 C T MYOM1 Missense_Mutation p.G508E 0.09 deleterious(0.02) probably_damaging(0.96) TCGA-A3-3308-01 18 3457635 3457635 G T TGIF1 Silent p.V301V 0.06 TCGA-A3-3308-01 19 15198108 15198108 G A OR1I1 Missense_Mutation p.V78I 0.14 tolerated(0.25) benign(0.032) TCGA-A3-3308-01 19 48385414 48385415 - A SULT2A1 Frame_Shift_Ins p.W134Lfs*8 0.21 TCGA-A3-3308-01 19 53645671 53645671 T - ZNF347 Frame_Shift_Del p.N138Ifs*21 0.24 TCGA-A3-3308-01 19 55451743 55451743 G A NLRP7 Silent p.D148D 0.21 TCGA-A3-3308-01 1 11155902 11155902 G - EXOSC10 Frame_Shift_Del p.S95Rfs*9 0.21 TCGA-A3-3308-01 1 154493879 154493879 G A TDRD10 Missense_Mutation p.R98Q 0.24 tolerated(0.21) possibly_damaging(0.656) TCGA-A3-3308-01 1 160143468 160143468 C G ATP1A4 Missense_Mutation p.A651G 0.21 deleterious(0) possibly_damaging(0.522) TCGA-A3-3308-01 1 185171842 185171844 AAG - SWT1 In_Frame_Del p.E529del 0.28 TCGA-A3-3308-01 1 186158774 186158774 A G HMCN1 Missense_Mutation p.T5558A 0.15 probably_damaging(0.931) TCGA-A3-3308-01 1 197093276 197093276 A T ASPM Missense_Mutation p.D1118E 0.21 tolerated(0.43) benign(0.033) TCGA-A3-3308-01 1 200880644 200880647 CACT - C1orf106 Frame_Shift_Del p.H343Tfs*3 0.38 TCGA-A3-3308-01 1 215955404 215955404 C G USH2A Missense_Mutation p.G3574R 0.21 possibly_damaging(0.74) TCGA-A3-3308-01 1 231298765 231298765 C T TRIM67 Missense_Mutation p.P17L 0.09 deleterious(0) probably_damaging(0.999) TCGA-A3-3308-01 1 248201987 248201987 T C OR2L2 Missense_Mutation p.C140R 0.17 deleterious(0) probably_damaging(0.983) TCGA-A3-3308-01 1 28858360 28858360 T A RCC1 Missense_Mutation p.L71Q 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-A3-3308-01 1 38260262 38260262 G T MANEAL Missense_Mutation p.K136N 0.44 tolerated(0.14) probably_damaging(0.943) TCGA-A3-3308-01 1 45962262 45962262 G C CCDC163P Missense_Mutation p.A99G 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.567) TCGA-A3-3308-01 1 52849169 52849169 G A ORC1 Missense_Mutation p.R646W 0.07 deleterious(0.01) probably_damaging(0.982) TCGA-A3-3308-01 1 54610216 54610216 G A CDCP2 Missense_Mutation p.S117F 0.16 deleterious(0) probably_damaging(0.992) TCGA-A3-3308-01 1 62288627 62288627 T C INADL Missense_Mutation p.I565T 0.22 deleterious(0) probably_damaging(0.952) TCGA-A3-3308-01 1 68906539 68906539 C A RPE65 Missense_Mutation p.A214S 0.17 tolerated(0.68) benign(0.002) TCGA-A3-3308-01 21 30961307 30961307 C T GRIK1 Missense_Mutation p.R474K 0.20 tolerated(0.1) benign(0.057) TCGA-A3-3308-01 21 43804123 43804130 CTAAAGCG - TMPRSS3 Splice_Site p.X191_splice 0.35 TCGA-A3-3308-01 22 24179339 24179339 T C DERL3 Missense_Mutation p.I176V 0.27 tolerated(0.06) benign(0.121) TCGA-A3-3308-01 2 135744718 135744718 G A MAP3K19 Missense_Mutation p.P575L 0.25 deleterious(0.03) probably_damaging(1) TCGA-A3-3308-01 2 152324541 152324541 A C RIF1 Missense_Mutation p.I2210L 0.20 deleterious(0.02) probably_damaging(0.914) TCGA-A3-3308-01 2 179566270 179566270 C G TTN Missense_Mutation p.A10195P 0.24 TCGA-A3-3308-01 2 179584416 179584416 G A TTN Missense_Mutation p.H7935Y 0.10 TCGA-A3-3308-01 2 202430456 202430456 C T ALS2CR11 Missense_Mutation p.E325K 0.13 tolerated(0.07) probably_damaging(0.987) TCGA-A3-3308-01 2 208461841 208461841 G A CREB1 3'UTR 0.23 TCGA-A3-3308-01 2 216298131 216298131 T G FN1 Missense_Mutation p.T111P 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-A3-3308-01 2 242102749 242102749 G C PPP1R7 Missense_Mutation p.G216A 0.10 deleterious(0) probably_damaging(1) TCGA-A3-3308-01 2 29022230 29022230 G A PPP1CB 3'UTR 0.21 TCGA-A3-3308-01 2 85829235 85829235 G T TMEM150A 5'UTR 0.40 TCGA-A3-3308-01 3 100949947 100949947 A G IMPG2 Silent p.C1092C 0.14 TCGA-A3-3308-01 3 10191522 10191525 CTGA - VHL Frame_Shift_Del p.P172Rfs*29 0.28 TCGA-A3-3308-01 3 123687916 123687916 A C ROPN1 3'UTR 0.16 TCGA-A3-3308-01 3 128757716 128757716 C T EFCC1 Silent p.L545L 0.19 TCGA-A3-3308-01 3 47125805 47125805 G - SETD2 Frame_Shift_Del p.P1822Qfs*16 0.29 TCGA-A3-3308-01 3 52436801 52436803 CTT - BAP1 In_Frame_Del p.K659del 0.33 TCGA-A3-3308-01 3 53898830 53898830 T A IL17RB Missense_Mutation p.L335H 0.20 deleterious(0) probably_damaging(0.998) TCGA-A3-3308-01 3 98001737 98001737 G A OR5H2 Silent p.S2S 0.23 TCGA-A3-3308-01 4 118005505 118005505 C T TRAM1L1 Missense_Mutation p.G349R 0.23 deleterious(0.01) unknown(0) TCGA-A3-3308-01 4 178911782 178911782 A G LINC01098 3'UTR 0.12 TCGA-A3-3308-01 4 38777917 38777918 - AA TLR10 5'UTR 0.16 TCGA-A3-3308-01 5 141694601 141694601 G A SPRY4 Missense_Mutation p.R48W 0.29 deleterious(0) probably_damaging(0.993) TCGA-A3-3308-01 5 31305299 31305302 AAGA - CDH6 Frame_Shift_Del p.K341Cfs*36 0.25 TCGA-A3-3308-01 5 55407417 55407417 A G ANKRD55 Silent p.D386D 0.26 TCGA-A3-3308-01 5 63257288 63257288 C G HTR1A Missense_Mutation p.V87L 0.15 tolerated(0.08) possibly_damaging(0.725) TCGA-A3-3308-01 6 10955449 10955449 A - SYCP2L Frame_Shift_Del p.E686Kfs*8 0.16 TCGA-A3-3308-01 6 149838510 149838510 A C PPIL4 Missense_Mutation p.D353E 0.17 tolerated(0.45) benign(0.008) TCGA-A3-3308-01 6 155635515 155635515 G - TFB1M Frame_Shift_Del p.T17Rfs*9 0.35 TCGA-A3-3308-01 6 168440859 168440859 G A KIF25 Silent p.T203T 0.30 TCGA-A3-3308-01 6 63990712 63990712 A C LGSN Nonsense_Mutation p.Y248* 0.15 TCGA-A3-3308-01 7 110764578 110764578 A G LRRN3 Missense_Mutation p.N584D 0.26 tolerated(0.25) benign(0.105) TCGA-A3-3308-01 7 121668608 121668608 A T PTPRZ1 Missense_Mutation p.K1664I 0.18 deleterious(0) possibly_damaging(0.886) TCGA-A3-3308-01 7 123332672 123332672 G T WASL Missense_Mutation p.P359Q 0.28 tolerated(0.25) unknown(0) TCGA-A3-3308-01 7 150873237 150873237 G A ASB10 Missense_Mutation p.R456C 0.29 tolerated(0.06) probably_damaging(0.987) TCGA-A3-3308-01 7 1543553 1543553 G A INTS1 Missense_Mutation p.A15V 0.36 tolerated(0.12) benign(0.002) TCGA-A3-3308-01 7 158447321 158447321 T C NCAPG2 Silent p.Q904Q 0.19 TCGA-A3-3308-01 7 6006567 6006567 G A RSPH10B Missense_Mutation p.R61C 0.37 tolerated(0.06) benign(0) TCGA-A3-3308-01 8 104427735 104427735 T G DCAF13 Missense_Mutation p.L173V 0.56 tolerated(0.29) benign(0.036) TCGA-A3-3308-01 8 113246594 113246594 A C CSMD3 Missense_Mutation p.F3580L 0.50 tolerated(0.06) benign(0.247) TCGA-A3-3308-01 8 15967631 15967631 G T MSR1 Nonsense_Mutation p.S440* 0.15 TCGA-A3-3308-01 8 27301762 27301762 C T PTK2B Missense_Mutation p.L730F 0.21 tolerated(0.73) benign(0.022) TCGA-A3-3308-01 8 37756812 37756812 C A RAB11FIP1 Nonsense_Mutation p.E50* 0.10 TCGA-A3-3308-01 8 42260890 42260890 T C VDAC3 Missense_Mutation p.S206P 0.04 deleterious(0.01) possibly_damaging(0.742) TCGA-A3-3308-01 8 81399984 81399984 T C ZBTB10 Silent p.S313S 0.16 TCGA-A3-3308-01 9 130911735 130911735 C G LCN2 Intron 0.04 TCGA-A3-3308-01 9 96415638 96415638 C T PHF2 Silent p.H260H 0.17 TCGA-A3-3308-01 X 120009353 120009353 C G CT47B1 Missense_Mutation p.V58L 0.15 tolerated(0.26) benign(0.042) TCGA-A3-3308-01 X 147582558 147582558 G T AFF2 5'UTR 0.26 TCGA-A3-3308-01 X 34962088 34962088 C T FAM47B Silent p.Y380Y 0.34 TCGA-A3-3308-01 X 70643015 70643015 G T TAF1 Missense_Mutation p.D1521Y 0.21 deleterious(0) probably_damaging(0.993) TCGA-A3-3311-01 10 106059125 106059125 G A GSTO2 3'UTR 0.28 TCGA-A3-3311-01 10 12833177 12833177 A C CAMK1D Missense_Mutation p.K196Q 0.14 tolerated(0.08) benign(0.061) TCGA-A3-3311-01 10 33134530 33134530 A C C10ORF68 Missense_Mutation p.T409P 0.09 deleterious(0.04) benign(0.047) TCGA-A3-3311-01 10 33199253 33199258 CAGGAT - ITGB1 In_Frame_Del p.D686_P687del 0.37 TCGA-A3-3311-01 11 118068750 118068750 T G AMICA1 Missense_Mutation p.K323T 0.29 tolerated(0.12) benign(0.033) TCGA-A3-3311-01 11 65266030 65266030 C G MALAT1 RNA 0.28 TCGA-A3-3311-01 12 10599220 10599220 A C KLRC1 Missense_Mutation p.L211R 0.33 deleterious(0.01) probably_damaging(1) TCGA-A3-3311-01 12 112194300 112194300 A - ACAD10 3'UTR 0.19 TCGA-A3-3311-01 12 48495290 48495290 A T SENP1 5'UTR 0.29 TCGA-A3-3311-01 12 58340855 58340855 C A XRCC6BP1 Missense_Mutation p.S104Y 0.17 deleterious(0.01) probably_damaging(0.943) TCGA-A3-3311-01 12 93205170 93205170 G - EEA1 Frame_Shift_Del p.A695Efs*27 0.17 TCGA-A3-3311-01 13 20039633 20039633 C G TPTE2 Missense_Mutation p.R195T 0.20 deleterious(0) possibly_damaging(0.83) TCGA-A3-3311-01 13 32915021 32915021 A G BRCA2 Missense_Mutation p.I2177V 0.21 tolerated(0.29) benign(0.164) TCGA-A3-3311-01 15 44751276 44751276 A T CTDSPL2 Nonsense_Mutation p.R22* 0.25 TCGA-A3-3311-01 15 89837084 89837084 T C FANCI Missense_Mutation p.I771T 0.28 tolerated(0.12) benign(0.012) TCGA-A3-3311-01 16 745593 745593 G C FBXL16 Missense_Mutation p.L322V 0.33 deleterious(0) probably_damaging(0.98) TCGA-A3-3311-01 17 6021491 6021491 G A WSCD1 Missense_Mutation p.R453H 0.21 tolerated(0.14) benign(0.022) TCGA-A3-3311-01 17 79168674 79168677 GACA - AZI1 Frame_Shift_Del p.V705Efs*10 0.30 TCGA-A3-3311-01 18 43666148 43666148 C T ATP5A1 Missense_Mutation p.D454N 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-A3-3311-01 19 15587107 15587107 A T PGLYRP2 Missense_Mutation p.L125Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-A3-3311-01 19 2041152 2041152 C T MKNK2 Missense_Mutation p.D333N 0.04 deleterious(0) possibly_damaging(0.762) TCGA-A3-3311-01 19 21607620 21607620 A G ZNF493 Missense_Mutation p.K720R 0.22 tolerated(0.05) benign(0.273) TCGA-A3-3311-01 1 12820749 12820749 G A C1orf158 Silent p.Q150Q 0.30 TCGA-A3-3311-01 1 157556209 157556209 G A FCRL4 Missense_Mutation p.P295L 0.22 deleterious(0) probably_damaging(0.922) TCGA-A3-3311-01 1 193119512 193119512 G C CDC73 Missense_Mutation p.E303Q 0.05 tolerated(0.17) possibly_damaging(0.644) TCGA-A3-3311-01 1 200954092 200954092 T A KIF21B Missense_Mutation p.D1233V 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-A3-3311-01 1 202932260 202932260 C T CYB5R1 Missense_Mutation p.E227K 0.29 deleterious(0.01) benign(0.037) TCGA-A3-3311-01 1 203465362 203465362 G A OPTC Missense_Mutation p.E77K 0.29 tolerated(1) benign(0.006) TCGA-A3-3311-01 1 214170133 214170133 G A PROX1 Missense_Mutation p.M85I 0.20 tolerated(0.24) probably_damaging(0.951) TCGA-A3-3311-01 1 227213828 227213828 C T CDC42BPA Silent p.V1451V 0.25 TCGA-A3-3311-01 1 228112054 228112054 T C WNT9A Missense_Mutation p.T134A 0.07 tolerated(0.05) probably_damaging(0.998) TCGA-A3-3311-01 1 2530196 2530196 G C MMEL1 Missense_Mutation p.L359V 0.26 deleterious(0.01) possibly_damaging(0.868) TCGA-A3-3311-01 1 66798124 66798124 G A PDE4B Intron 0.32 TCGA-A3-3311-01 2 179399168 179399168 C T TTN Silent p.R34058R 0.28 TCGA-A3-3311-01 2 220396729 220396729 C G ASIC4 Missense_Mutation p.T372R 0.32 deleterious(0.01) probably_damaging(0.98) TCGA-A3-3311-01 2 3391616 3391616 C T TRAPPC12 Silent p.D74D 0.36 TCGA-A3-3311-01 2 39075474 39075474 C - DHX57 Frame_Shift_Del p.A701Qfs*3 0.26 TCGA-A3-3311-01 2 97483238 97483238 A C CNNM3 Silent p.R408R 0.09 TCGA-A3-3311-01 3 122927986 122927986 A C SEC22A 5'UTR 0.23 TCGA-A3-3311-01 3 172480526 172480526 T C ECT2 Missense_Mutation p.V312A 0.25 deleterious(0) benign(0.201) TCGA-A3-3311-01 3 4355062 4355062 A G SETMAR Missense_Mutation p.T213A 0.22 tolerated_low_confidence(0.21) benign(0.072) TCGA-A3-3311-01 3 47059132 47059132 C T SETD2 Missense_Mutation p.R2510H 0.33 deleterious(0.02) benign(0.264) TCGA-A3-3311-01 3 49466658 49466658 C T NICN1 Silent p.L5L 0.35 TCGA-A3-3311-01 3 52598242 52598242 A C PBRM1 Missense_Mutation p.C1208W 0.37 deleterious(0) possibly_damaging(0.827) TCGA-A3-3311-01 4 123813456 123813456 G - FGF2 Frame_Shift_Del p.V258Wfs*3 0.25 TCGA-A3-3311-01 4 146650343 146650343 G C C4orf51 Missense_Mutation p.G130A 0.40 tolerated(0.52) benign(0.182) TCGA-A3-3311-01 4 26483745 26483745 C A CCKAR Missense_Mutation p.G268W 0.23 deleterious(0) probably_damaging(1) TCGA-A3-3311-01 4 2733610 2733610 G C FAM193A 3'UTR 0.26 TCGA-A3-3311-01 4 83839153 83839153 C T THAP9 Silent p.V596V 0.34 TCGA-A3-3311-01 5 110428228 110428228 A T WDR36 Missense_Mutation p.N81I 0.11 deleterious(0) benign(0.261) TCGA-A3-3311-01 5 32126354 32126354 C A GOLPH3 Missense_Mutation p.E287D 0.26 tolerated(0.17) benign(0.018) TCGA-A3-3311-01 6 142737063 142737063 G T GPR126 Missense_Mutation p.A934S 0.22 deleterious(0) probably_damaging(0.999) TCGA-A3-3311-01 6 36730739 36730739 A G CPNE5 Silent p.S270S 0.23 TCGA-A3-3311-01 6 91228282 91228282 C A MAP3K7 Splice_Site p.X509_splice 0.23 TCGA-A3-3311-01 7 121653811 121653811 G A PTPRZ1 Missense_Mutation p.A1571T 0.27 deleterious(0.03) benign(0.002) TCGA-A3-3311-01 7 142206550 142206550 C T TRBV10-2 Missense_Mutation p.R102H 0.28 tolerated(0.13) benign(0.004) TCGA-A3-3311-01 7 142626641 142626641 G A TRPV5 Silent p.I123I 0.25 TCGA-A3-3311-01 7 1539240 1539240 C T INTS1 Missense_Mutation p.R238Q 0.11 deleterious(0) probably_damaging(0.975) TCGA-A3-3311-01 7 40085608 40085608 A T CDK13 Missense_Mutation p.I843F 0.20 deleterious(0) probably_damaging(0.996) TCGA-A3-3311-01 7 44805139 44805139 C A ZMIZ2 Missense_Mutation p.P735T 0.29 tolerated(0.18) benign(0.023) TCGA-A3-3311-01 7 6502730 6502730 C G KDELR2 3'UTR 0.28 TCGA-A3-3311-01 8 20112763 20112763 C T LZTS1 5'UTR 0.20 TCGA-A3-3311-01 8 27970578 27970578 G A ELP3 Missense_Mutation p.V169M 0.09 deleterious(0) probably_damaging(0.936) TCGA-A3-3311-01 8 4495044 4495044 C A CSMD1 Missense_Mutation p.G41V 0.35 probably_damaging(1) TCGA-A3-3311-01 8 52359592 52359592 C A PXDNL Silent p.V499V 0.23 TCGA-A3-3311-01 8 70515859 70515861 AAT - SULF1 In_Frame_Del p.K405_I406delinsN 0.26 TCGA-A3-3311-01 9 139266450 139266450 G C CARD9 Silent p.P27P 0.39 TCGA-A3-3311-01 9 88938317 88938317 G A ZCCHC6 Missense_Mutation p.S783L 0.14 deleterious_low_confidence(0.04) benign(0.001) TCGA-A3-3311-01 9 91965698 91965715 AAACACCTGAAGCTCAAA - SECISBP2 In_Frame_Del p.H683_K688del 0.28 TCGA-A3-3311-01 X 12906241 12906241 C T TLR7 Missense_Mutation p.H872Y 0.49 tolerated(0.17) benign(0.033) TCGA-A3-3313-01 10 123984267 123984267 A G TACC2 Missense_Mutation p.I2525V 0.06 probably_damaging(0.995) TCGA-A3-3313-01 10 126682552 126682552 C T CTBP2 Missense_Mutation p.M801I 0.36 deleterious(0.01) possibly_damaging(0.564) TCGA-A3-3313-01 10 135370646 135370646 A G SYCE1 Missense_Mutation p.L130S 0.25 tolerated(0.25) probably_damaging(0.994) TCGA-A3-3313-01 10 355983 355983 A T DIP2C Missense_Mutation p.L1325Q 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-A3-3313-01 10 71962789 71962789 G T PPA1 3'UTR 0.43 TCGA-A3-3313-01 10 88683528 88683528 A T BMPR1A 3'UTR 0.31 TCGA-A3-3313-01 10 92616929 92616929 G A HTR7 Missense_Mutation p.T167M 0.07 deleterious(0) probably_damaging(1) TCGA-A3-3313-01 10 98817000 98817000 C T SLIT1 Missense_Mutation p.G375D 0.34 deleterious(0.01) probably_damaging(1) TCGA-A3-3313-01 11 107940858 107940859 AT - CUL5 Frame_Shift_Del p.F273* 0.11 TCGA-A3-3313-01 11 128840160 128840160 G A ARHGAP32 Nonsense_Mutation p.Q1636* 0.29 TCGA-A3-3313-01 11 18124827 18124828 - T SAAL1 Frame_Shift_Ins p.E68Rfs*5 0.26 TCGA-A3-3313-01 11 6232576 6232576 A G FAM160A2 3'UTR 0.58 TCGA-A3-3313-01 11 71733393 71733393 T C NUMA1 Missense_Mutation p.K122E 0.45 benign(0.038) TCGA-A3-3313-01 11 78369474 78369474 C T TENM4 Missense_Mutation p.V2647I 0.07 tolerated(0.07) possibly_damaging(0.756) TCGA-A3-3313-01 11 804239 804239 C T PIDD Silent p.L50L 0.40 TCGA-A3-3313-01 12 122723269 122723269 G T VPS33A Silent p.V389V 0.06 TCGA-A3-3313-01 12 14947533 14947533 C G WBP11 Missense_Mutation p.G220A 0.32 deleterious_low_confidence(0.02) unknown(0) TCGA-A3-3313-01 12 58207197 58207197 C A AVIL Missense_Mutation p.V51L 0.33 tolerated(0.22) benign(0.007) TCGA-A3-3313-01 12 59284527 59284527 C G LRIG3 Missense_Mutation p.Q145H 0.09 tolerated(0.54) benign(0.013) TCGA-A3-3313-01 12 89818965 89818965 A C POC1B Missense_Mutation p.I435M 0.40 deleterious(0.04) possibly_damaging(0.823) TCGA-A3-3313-01 13 26789216 26789216 C A RNF6 Missense_Mutation p.R268M 0.35 deleterious(0) possibly_damaging(0.733) TCGA-A3-3313-01 13 38357441 38357441 A C TRPC4 Silent p.V10V 0.37 TCGA-A3-3313-01 13 51935939 51935939 C - SERPINE3 Intron 0.31 TCGA-A3-3313-01 13 77798620 77798620 G T MYCBP2 Missense_Mutation p.H931N 0.32 benign(0.006) TCGA-A3-3313-01 14 102505823 102505823 C T DYNC1H1 Silent p.N3845N 0.04 TCGA-A3-3313-01 14 61519237 61519238 - T SLC38A6 Intron 0.56 TCGA-A3-3313-01 14 69256228 69256228 G - ZFP36L1 3'UTR 0.28 TCGA-A3-3313-01 14 74823530 74823530 T G VRTN Missense_Mutation p.L15R 0.43 deleterious(0) possibly_damaging(0.871) TCGA-A3-3313-01 15 31664225 31664225 T C KLF13 Missense_Mutation p.F197S 0.25 deleterious(0) possibly_damaging(0.637) TCGA-A3-3313-01 15 35529979 35529979 C T ANP32AP1 RNA 0.31 TCGA-A3-3313-01 15 40476084 40476084 G C BUB1B Missense_Mutation p.A251P 0.30 tolerated(0.13) benign(0.02) TCGA-A3-3313-01 15 54307905 54307905 A C UNC13C Missense_Mutation p.L935F 0.45 tolerated_low_confidence(0.42) benign(0.149) TCGA-A3-3313-01 15 59499808 59499808 T A LDHAL6B Silent p.I223I 0.32 TCGA-A3-3313-01 15 60806849 60806849 T A RORA Missense_Mutation p.L163F 0.38 deleterious(0.02) probably_damaging(0.91) TCGA-A3-3313-01 15 63363459 63363459 T - TPM1 3'UTR 0.20 TCGA-A3-3313-01 15 66639607 66639607 C T TIPIN Intron 0.08 TCGA-A3-3313-01 15 66641437 66641437 C G TIPIN Missense_Mutation p.D146H 0.07 tolerated(0.08) possibly_damaging(0.873) TCGA-A3-3313-01 15 75931905 75931905 G C IMP3 3'UTR 0.29 TCGA-A3-3313-01 15 90185512 90185512 C A KIF7 Missense_Mutation p.K772N 0.43 deleterious(0.04) benign(0.309) TCGA-A3-3313-01 16 19488785 19488785 T A TMC5 Missense_Mutation p.I705N 0.37 deleterious(0) probably_damaging(0.968) TCGA-A3-3313-01 16 4383391 4383392 - TTT GLIS2 In_Frame_Ins p.F73dup 0.49 TCGA-A3-3313-01 16 70301574 70301574 T C AARS Missense_Mutation p.K404E 0.41 deleterious(0.04) benign(0.007) TCGA-A3-3313-01 16 82131925 82131925 C T HSD17B2 Missense_Mutation p.L350F 0.36 tolerated(0.65) benign(0.004) TCGA-A3-3313-01 17 17064559 17064559 G C MPRIP Missense_Mutation p.E684D 0.49 deleterious(0.02) possibly_damaging(0.886) TCGA-A3-3313-01 17 36484110 36484110 G T GPR179 Missense_Mutation p.A1781D 0.45 deleterious(0.01) benign(0.108) TCGA-A3-3313-01 17 38955746 38955746 C T KRT28 Missense_Mutation p.D134N 0.10 tolerated(0.1) benign(0.046) TCGA-A3-3313-01 17 39679933 39679933 T C KRT19 3'UTR 0.35 TCGA-A3-3313-01 17 39846195 39846195 T C EIF1 Splice_Site p.X65_splice 0.45 TCGA-A3-3313-01 17 42850678 42850678 C T ADAM11 Missense_Mutation p.T292I 0.36 tolerated(0.11) probably_damaging(0.939) TCGA-A3-3313-01 17 48677037 48677037 G T CACNA1G Missense_Mutation p.K1169N 0.18 tolerated(0.07) possibly_damaging(0.889) TCGA-A3-3313-01 17 75208208 75208209 - AA SEC14L1 Frame_Shift_Ins p.V598Kfs*16 0.34 TCGA-A3-3313-01 17 79880667 79880667 C T MAFG Silent p.K101K 0.16 TCGA-A3-3313-01 18 5397069 5397069 T - EPB41L3 Frame_Shift_Del p.K943Nfs*9 0.31 TCGA-A3-3313-01 18 63547747 63547747 G T CDH7 Nonsense_Mutation p.G659* 0.07 TCGA-A3-3313-01 19 15302555 15302555 C A NOTCH3 Splice_Site p.X268_splice 0.08 TCGA-A3-3313-01 19 16539554 16539554 T A EPS15L1 Missense_Mutation p.I173F 0.25 deleterious(0) probably_damaging(0.991) TCGA-A3-3313-01 19 16910759 16910759 G A NWD1 Silent p.V1174V 0.36 TCGA-A3-3313-01 19 18119105 18119105 C T ARRDC2 5'UTR 0.22 TCGA-A3-3313-01 19 20607672 20607672 G T ZNF826P RNA 0.38 TCGA-A3-3313-01 19 42364899 42364899 G T RPS19 Missense_Mutation p.A19S 0.29 tolerated(0.18) possibly_damaging(0.624) TCGA-A3-3313-01 19 49526346 49526346 C T CGB Missense_Mutation p.V99M 0.17 tolerated(0.37) benign(0.107) TCGA-A3-3313-01 1 156509711 156509711 G C IQGAP3 Missense_Mutation p.D937E 0.38 tolerated(0.2) benign(0.058) TCGA-A3-3313-01 1 156779265 156779265 C G SH2D2A Missense_Mutation p.R254S 0.04 tolerated(0.08) possibly_damaging(0.844) TCGA-A3-3313-01 1 201335996 201335996 C A TNNT2 Missense_Mutation p.G58V 0.35 deleterious(0.01) probably_damaging(0.924) TCGA-A3-3313-01 1 213178426 213178426 A G ANGEL2 Silent p.Y361Y 0.36 TCGA-A3-3313-01 1 231700333 231700333 C A TSNAX Silent p.V185V 0.37 TCGA-A3-3313-01 1 245022119 245022119 T C HNRNPU Missense_Mutation p.Y381C 0.04 deleterious(0.01) unknown(0) TCGA-A3-3313-01 1 38484984 38484984 T A UTP11L Missense_Mutation p.F166I 0.07 tolerated(0.19) possibly_damaging(0.493) TCGA-A3-3313-01 1 55551626 55551626 A - USP24 Frame_Shift_Del p.Y2252Ifs*5 0.19 TCGA-A3-3313-01 1 57351601 57351601 A C C8A Missense_Mutation p.K286T 0.07 tolerated(0.12) benign(0.038) TCGA-A3-3313-01 20 34832710 34832710 G T AAR2 Silent p.R283R 0.08 TCGA-A3-3313-01 20 48479596 48479596 T G SLC9A8 Missense_Mutation p.S298A 0.26 tolerated(0.08) benign(0.026) TCGA-A3-3313-01 20 57768699 57768699 G A ZNF831 Silent p.Q875Q 0.07 TCGA-A3-3313-01 21 46021150 46021150 C T KRTAP10-7 Missense_Mutation p.T210M 0.03 deleterious(0.04) unknown(0) TCGA-A3-3313-01 22 36892016 36892016 G T FOXRED2 Missense_Mutation p.T541N 0.39 deleterious(0.01) possibly_damaging(0.656) TCGA-A3-3313-01 2 101009797 101009797 G C CHST10 Missense_Mutation p.I327M 0.07 deleterious(0) possibly_damaging(0.9) TCGA-A3-3313-01 2 10927548 10927548 G T PDIA6 Missense_Mutation p.A339D 0.39 deleterious(0) probably_damaging(0.918) TCGA-A3-3313-01 2 159672329 159672329 G T DAPL1 Missense_Mutation p.C107F 0.11 deleterious(0) probably_damaging(0.999) TCGA-A3-3313-01 2 179360386 179360386 T G PLEKHA3 Missense_Mutation p.M205R 0.30 tolerated(0.45) benign(0.409) TCGA-A3-3313-01 2 179584535 179584535 G A TTN Missense_Mutation p.P7895L 0.31 TCGA-A3-3313-01 2 225653778 225653778 A G DOCK10 Intron 0.39 TCGA-A3-3313-01 2 227662313 227662313 C T IRS1 Missense_Mutation p.R381H 0.05 tolerated(0.69) probably_damaging(0.991) TCGA-A3-3313-01 2 85662808 85662808 G A SH2D6 Missense_Mutation p.R91H 0.32 deleterious(0) probably_damaging(1) TCGA-A3-3313-01 3 124810981 124810982 - T SLC12A8 Nonsense_Mutation p.Y589* 0.33 TCGA-A3-3313-01 3 127338092 127338092 A T MCM2 Missense_Mutation p.M746L 0.33 tolerated(1) benign(0.009) TCGA-A3-3313-01 3 150404112 150404112 G A FAM194A Missense_Mutation p.P195S 0.20 tolerated(0.24) benign(0.067) TCGA-A3-3313-01 3 193382692 193382693 - TATA OPA1 Frame_Shift_Ins p.R879Ifs*2 0.30 TCGA-A3-3313-01 3 45537772 45537772 A G LARS2 Missense_Mutation p.K510R 0.38 deleterious(0.04) benign(0.062) TCGA-A3-3313-01 3 49397513 49397513 G T RHOA 3'UTR 0.56 TCGA-A3-3313-01 3 88199301 88199301 C T C3orf38 Silent p.V33V 0.43 TCGA-A3-3313-01 4 126329664 126329665 - ATTT FAT4 Frame_Shift_Ins p.I1879Nfs*5 0.29 TCGA-A3-3313-01 4 15437360 15437360 A G C1QTNF7 Missense_Mutation p.E5G 0.35 tolerated_low_confidence(0.16) benign(0.334) TCGA-A3-3313-01 4 154523863 154523863 A - KIAA0922 Frame_Shift_Del p.T875Rfs*12 0.31 TCGA-A3-3313-01 4 169392986 169392986 C T DDX60L Missense_Mutation p.G59E 0.33 deleterious(0.04) possibly_damaging(0.776) TCGA-A3-3313-01 4 42618092 42618092 G C ATP8A1 Missense_Mutation p.R123G 0.31 deleterious(0) probably_damaging(0.997) TCGA-A3-3313-01 4 71693661 71693661 T G GRSF1 Missense_Mutation p.K348T 0.36 deleterious(0.01) probably_damaging(0.972) TCGA-A3-3313-01 5 1076852 1076852 T C SLC12A7 Missense_Mutation p.I569V 0.07 tolerated(0.17) benign(0.181) TCGA-A3-3313-01 5 121488728 121488728 T G ZNF474 Missense_Mutation p.I348S 0.32 deleterious_low_confidence(0.03) benign(0.026) TCGA-A3-3313-01 5 139422171 139422172 - TAG NRG2 In_Frame_Ins p.V161_K162insL 0.27 TCGA-A3-3313-01 5 139422174 139422174 C A NRG2 Missense_Mutation p.V161L 0.33 deleterious(0.04) probably_damaging(0.99) TCGA-A3-3313-01 5 149769510 149769510 G T TCOF1 Missense_Mutation p.S1036I 0.42 deleterious(0) possibly_damaging(0.806) TCGA-A3-3313-01 5 38945658 38945658 C G RICTOR Missense_Mutation p.C1523S 0.28 deleterious(0) probably_damaging(0.997) TCGA-A3-3313-01 5 52285195 52285195 G A ITGA2 5'UTR 0.18 TCGA-A3-3313-01 5 78975478 78975478 T G PAPD4 Missense_Mutation p.Y429D 0.32 deleterious(0.01) possibly_damaging(0.724) TCGA-A3-3313-01 6 28200339 28200339 G A ZSCAN9 Splice_Site p.X241_splice 0.41 TCGA-A3-3313-01 6 30890728 30890728 C A VARS2 Missense_Mutation p.F750L 0.52 deleterious(0.02) benign(0.283) TCGA-A3-3313-01 6 30890912 30890912 C T VARS2 Silent p.V769V 0.50 TCGA-A3-3313-01 6 31829196 31829196 G A NEU1 Silent p.V128V 0.45 TCGA-A3-3313-01 6 31846784 31846784 C A SLC44A4 5'Flank 0.44 TCGA-A3-3313-01 6 42541500 42541500 G A UBR2 Missense_Mutation p.R36K 0.61 tolerated(1) benign(0) TCGA-A3-3313-01 6 42541661 42541661 G A UBR2 Missense_Mutation p.E90K 0.62 tolerated(1) benign(0) TCGA-A3-3313-01 6 46108939 46108940 - A ENPP4 Frame_Shift_Ins p.N327Kfs*2 0.47 TCGA-A3-3313-01 6 51637542 51637542 G A PKHD1 Missense_Mutation p.S2867F 0.39 tolerated(0.07) probably_damaging(0.987) TCGA-A3-3313-01 6 86223568 86223568 T - SNX14 Frame_Shift_Del p.K868Sfs*12 0.32 TCGA-A3-3313-01 7 128470591 128470591 C T FLNC 5'UTR 0.56 TCGA-A3-3313-01 7 138602905 138602905 A G KIAA1549 Silent p.P489P 0.37 TCGA-A3-3313-01 7 151842348 151842348 G T KMT2C Silent p.T4688T 0.30 TCGA-A3-3313-01 7 65429388 65429396 GATGGTACT AA GUSB Frame_Shift_Del p.Q568Lfs*24 0.33 TCGA-A3-3313-01 7 99084134 99084134 C A ZNF789 Missense_Mutation p.P101T 0.44 tolerated(0.15) benign(0.039) TCGA-A3-3313-01 7 99754986 99754986 C - C7orf43 Intron 0.29 TCGA-A3-3313-01 8 103341320 103341324 TGTTA - UBR5 Frame_Shift_Del p.N440Kfs*8 0.43 TCGA-A3-3313-01 8 119938760 119938760 G C TNFRSF11B Missense_Mutation p.Q264E 0.32 deleterious(0.02) benign(0.063) TCGA-A3-3313-01 8 18725291 18725291 T G PSD3 Silent p.A509A 0.40 TCGA-A3-3313-01 8 48840368 48840368 A G PRKDC Missense_Mutation p.I741T 0.39 possibly_damaging(0.885) TCGA-A3-3313-01 8 6266849 6266849 T A MCPH1 Nonsense_Mutation p.Y24* 0.31 TCGA-A3-3313-01 8 6266851 6266851 C G MCPH1 Nonsense_Mutation p.S25* 0.32 TCGA-A3-3313-01 8 77618806 77618806 A G ZFHX4 Missense_Mutation p.N828S 0.34 possibly_damaging(0.486) TCGA-A3-3313-01 8 98731381 98731381 T C MTDH Silent p.T495T 0.36 TCGA-A3-3313-01 9 2718621 2718621 C T KCNV2 Silent p.G294G 0.06 TCGA-A3-3313-01 9 95610604 95610604 A G ZNF484 Silent p.Y157Y 0.36 TCGA-A3-3313-01 X 117032963 117032963 G T KLHL13 Missense_Mutation p.L629I 0.76 tolerated(0.09) probably_damaging(0.919) TCGA-A3-3316-01 10 63851221 63851221 A C ARID5B Missense_Mutation p.N667H 0.10 tolerated(0.18) probably_damaging(0.991) TCGA-A3-3316-01 10 89711891 89711891 G A PTEN Missense_Mutation p.S170N 0.32 deleterious(0) probably_damaging(0.998) TCGA-A3-3316-01 11 107974931 107974931 A G CUL5 Silent p.Q721Q 0.15 TCGA-A3-3316-01 11 22646829 22646829 C T FANCF Silent p.E176E 0.13 TCGA-A3-3316-01 11 58711084 58711084 G C GLYATL1 Missense_Mutation p.R31S 0.27 tolerated_low_confidence(0.1) benign(0.025) TCGA-A3-3316-01 11 70052642 70052642 C T FADD 3'UTR 0.22 TCGA-A3-3316-01 11 8060361 8060361 G A TUB 5'UTR 0.27 TCGA-A3-3316-01 12 113624514 113624514 G A RITA1 5'UTR 0.06 TCGA-A3-3316-01 12 130926846 130926846 C T RIMBP2 Missense_Mutation p.V334I 0.24 tolerated(0.42) possibly_damaging(0.556) TCGA-A3-3316-01 15 31282988 31282988 A C MTMR10 Missense_Mutation p.L38R 0.17 deleterious(0) possibly_damaging(0.779) TCGA-A3-3316-01 15 42173407 42173407 C G SPTBN5 Missense_Mutation p.G828A 0.16 benign(0.121) TCGA-A3-3316-01 16 9857569 9857569 G T GRIN2A Missense_Mutation p.Q1278K 0.15 tolerated(0.86) benign(0.3) TCGA-A3-3316-01 17 40720575 40720575 C T MLX Missense_Mutation p.T110I 0.32 deleterious(0.01) benign(0.428) TCGA-A3-3316-01 17 72610086 72610086 C T CD300E Missense_Mutation p.E159K 0.24 tolerated(0.13) benign(0.007) TCGA-A3-3316-01 18 2722637 2722637 A G SMCHD1 Missense_Mutation p.D860G 0.09 tolerated(0.2) benign(0.293) TCGA-A3-3316-01 18 28934518 28934518 C T DSG1 Nonsense_Mutation p.Q787* 0.11 TCGA-A3-3316-01 18 29116293 29116293 G C DSG2 Missense_Mutation p.E518Q 0.10 tolerated(0.29) benign(0.007) TCGA-A3-3316-01 18 7232028 7232028 A - LRRC30 Frame_Shift_Del p.K299Nfs*? 0.38 TCGA-A3-3316-01 19 15794430 15794430 G A CYP4F12 Missense_Mutation p.A259T 0.31 deleterious(0.02) possibly_damaging(0.777) TCGA-A3-3316-01 19 36041444 36041444 G T ATP4A 3'UTR 0.15 TCGA-A3-3316-01 19 57335855 57335855 A T PEG3 Missense_Mutation p.F57I 0.39 deleterious(0) possibly_damaging(0.76) TCGA-A3-3316-01 1 169391358 169391358 A G CCDC181 Missense_Mutation p.F104S 0.16 tolerated(0.48) benign(0.015) TCGA-A3-3316-01 1 197390735 197390735 G A CRB1 Missense_Mutation p.A593T 0.10 tolerated(1) benign(0.004) TCGA-A3-3316-01 1 203816426 203816426 C A ZC3H11A Nonsense_Mutation p.S386* 0.15 TCGA-A3-3316-01 1 226032237 226032237 T C EPHX1 Missense_Mutation p.L360P 0.29 deleterious(0) probably_damaging(0.925) TCGA-A3-3316-01 1 245222709 245222709 G C EFCAB2 Missense_Mutation p.R44S 0.25 deleterious(0) probably_damaging(0.991) TCGA-A3-3316-01 1 3102700 3102700 G A PRDM16 Missense_Mutation p.V17I 0.17 tolerated_low_confidence(0.62) benign(0.001) TCGA-A3-3316-01 1 76363675 76363675 A C MSH4 Missense_Mutation p.E813D 0.03 deleterious(0.02) possibly_damaging(0.876) TCGA-A3-3316-01 3 10188296 10188296 A - VHL Frame_Shift_Del p.I147Ffs*12 0.29 TCGA-A3-3316-01 3 113379013 113379013 T C KIAA2018 Missense_Mutation p.M506V 0.29 benign(0.001) TCGA-A3-3316-01 3 193177001 193177001 A G ATP13A4 Missense_Mutation p.F515L 0.26 tolerated(0.17) benign(0.022) TCGA-A3-3316-01 3 52588839 52588839 G - PBRM1 Frame_Shift_Del p.V1398Lfs*34 0.35 TCGA-A3-3316-01 4 155507521 155507521 G T FGA Missense_Mutation p.P354T 0.23 tolerated_low_confidence(0.06) benign(0.025) TCGA-A3-3316-01 4 156632326 156632326 G C GUCY1A3 Missense_Mutation p.G337R 0.20 tolerated(0.43) benign(0.202) TCGA-A3-3316-01 4 164394922 164394922 G A TKTL2 5'UTR 0.61 TCGA-A3-3316-01 4 82355851 82355851 A G RASGEF1B Missense_Mutation p.I381T 0.31 deleterious(0) probably_damaging(0.969) TCGA-A3-3316-01 5 43677827 43677827 G A NNT Missense_Mutation p.G932D 0.33 deleterious(0) probably_damaging(0.999) TCGA-A3-3316-01 7 20785034 20785034 C - ABCB5 Frame_Shift_Del p.H1135Ifs*17 0.36 TCGA-A3-3316-01 7 21908580 21908580 T C DNAH11 Missense_Mutation p.S3987P 0.19 possibly_damaging(0.522) TCGA-A3-3316-01 7 21920474 21920474 C T DNAH11 Missense_Mutation p.A4124V 0.03 benign(0.011) TCGA-A3-3316-01 7 48556346 48556346 C T ABCA13 Silent p.L4556L 0.09 TCGA-A3-3316-01 7 73246086 73246086 T G CLDN4 Missense_Mutation p.C185W 0.24 deleterious(0.01) probably_damaging(0.957) TCGA-A3-3316-01 9 127998975 127998975 T C HSPA5 Missense_Mutation p.K621E 0.28 tolerated_low_confidence(0.25) benign(0.068) TCGA-A3-3316-01 9 4826861 4826861 C T RCL1 Missense_Mutation p.T71I 0.03 deleterious(0) probably_damaging(0.998) TCGA-A3-3316-01 X 129343630 129343630 A T ZNF280C Missense_Mutation p.L680H 0.45 deleterious(0.02) benign(0.092) TCGA-A3-3316-01 X 129343631 129343631 G A ZNF280C Missense_Mutation p.L680F 0.46 deleterious(0.04) benign(0.062) TCGA-A3-3317-01 10 103750317 103750317 T C C10orf76 Missense_Mutation p.D466G 0.27 deleterious(0.01) possibly_damaging(0.549) TCGA-A3-3317-01 10 135053527 135053527 C A VENTX Missense_Mutation p.A165E 0.22 tolerated(0.27) benign(0.005) TCGA-A3-3317-01 11 108159699 108159704 GTTAGG - ATM Splice_Site p.X1370_splice 0.21 TCGA-A3-3317-01 11 134122802 134122802 C G THYN1 5'UTR 0.20 TCGA-A3-3317-01 11 20676346 20676346 C T SLC6A5 Missense_Mutation p.P776S 0.27 deleterious(0.03) benign(0.342) TCGA-A3-3317-01 11 20676347 20676347 C T SLC6A5 Missense_Mutation p.P776L 0.27 deleterious(0.02) benign(0.334) TCGA-A3-3317-01 11 3050597 3050597 G C CARS Missense_Mutation p.S293C 0.20 deleterious(0) possibly_damaging(0.569) TCGA-A3-3317-01 11 44096169 44096169 G A ACCS Missense_Mutation p.E143K 0.24 tolerated(0.13) benign(0.17) TCGA-A3-3317-01 11 59611470 59611470 C T GIF Silent p.S46S 0.23 TCGA-A3-3317-01 11 64673943 64673943 G A ATG2A Nonsense_Mutation p.Q1016* 0.29 TCGA-A3-3317-01 12 50453582 50453582 C T ASIC1 Silent p.L135L 0.28 TCGA-A3-3317-01 12 72278663 72278663 A G TBC1D15 Missense_Mutation p.K139R 0.21 tolerated(1) probably_damaging(0.999) TCGA-A3-3317-01 13 100925589 100925589 A T PCCA Missense_Mutation p.T352S 0.14 deleterious(0) probably_damaging(0.989) TCGA-A3-3317-01 13 21417161 21417161 C T XPO4 Missense_Mutation p.M200I 0.13 tolerated(0.39) benign(0.001) TCGA-A3-3317-01 13 99098408 99098408 G A FARP1 Silent p.K951K 0.31 TCGA-A3-3317-01 14 103389067 103389067 C T AMN Silent p.C14C 0.64 TCGA-A3-3317-01 14 24657425 24657425 G C IPO4 Missense_Mutation p.T92R 0.46 tolerated(0.1) benign(0.003) TCGA-A3-3317-01 14 24710922 24710922 G T TINF2 Missense_Mutation p.Q120K 0.43 tolerated(0.18) benign(0.086) TCGA-A3-3317-01 14 33068660 33068660 T A AKAP6 Silent p.A838A 0.35 TCGA-A3-3317-01 14 70633975 70633975 C T SLC8A3 Missense_Mutation p.D389N 0.35 tolerated(0.24) benign(0.003) TCGA-A3-3317-01 15 28514431 28514431 C A HERC2 Missense_Mutation p.G470V 0.33 probably_damaging(0.97) TCGA-A3-3317-01 15 40299227 40299227 C G EIF2AK4 Missense_Mutation p.A1123G 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-A3-3317-01 15 77906716 77906716 G T LINGO1 Missense_Mutation p.H511Q 0.26 tolerated(0.24) benign(0.336) TCGA-A3-3317-01 16 21033334 21033334 T G DNAH3 Missense_Mutation p.H1912P 0.28 deleterious(0.01) benign(0.349) TCGA-A3-3317-01 16 28481750 28481750 G A NPIPB7 Missense_Mutation p.R4C 0.14 deleterious_low_confidence(0) unknown(0) TCGA-A3-3317-01 16 4504893 4504893 T - DNAJA3 Frame_Shift_Del p.K475Rfs*76 0.23 TCGA-A3-3317-01 16 4562433 4562433 G C CDIP1 3'UTR 0.50 TCGA-A3-3317-01 16 4794979 4794979 C T C16orf71 Missense_Mutation p.P337L 0.25 tolerated(0.13) benign(0.01) TCGA-A3-3317-01 16 61689382 61689382 A C CDH8 Missense_Mutation p.L633W 0.22 deleterious(0) probably_damaging(0.995) TCGA-A3-3317-01 16 86565766 86565766 G T MTHFSD Silent p.R335R 0.26 TCGA-A3-3317-01 17 4926964 4926964 C G KIF1C Missense_Mutation p.Q944E 0.32 deleterious_low_confidence(0.04) benign(0.217) TCGA-A3-3317-01 17 65214762 65214771 TTCTATTTCC - HELZ Frame_Shift_Del p.L50Ffs*18 0.26 TCGA-A3-3317-01 17 74324943 74324943 C G PRPSAP1 Missense_Mutation p.R212S 0.15 deleterious(0.03) possibly_damaging(0.596) TCGA-A3-3317-01 17 77768913 77768913 G C CBX8 Missense_Mutation p.L231V 0.22 tolerated(0.43) benign(0.005) TCGA-A3-3317-01 17 80041257 80041257 G T FASN Missense_Mutation p.L1796M 0.27 deleterious(0) probably_damaging(1) TCGA-A3-3317-01 18 28651758 28651758 A G DSC2 Silent p.Y646Y 0.22 TCGA-A3-3317-01 18 47799982 47799982 A T MBD1 Silent p.P466P 0.31 TCGA-A3-3317-01 19 12813644 12813644 T A TNPO2 Missense_Mutation p.E766D 0.29 deleterious(0.02) possibly_damaging(0.904) TCGA-A3-3317-01 19 19136452 19136452 G A SUGP2 Silent p.L235L 0.23 TCGA-A3-3317-01 19 19653420 19653420 G A CILP2 Missense_Mutation p.G277R 0.28 tolerated(0.37) possibly_damaging(0.78) TCGA-A3-3317-01 19 36430547 36430547 G C LRFN3 Missense_Mutation p.V74L 0.17 tolerated(0.46) benign(0.05) TCGA-A3-3317-01 19 44303017 44303017 T A LYPD5 Missense_Mutation p.D106V 0.15 deleterious(0) possibly_damaging(0.843) TCGA-A3-3317-01 19 44471370 44471370 C T ZNF221 Silent p.G572G 0.05 TCGA-A3-3317-01 19 46888136 46888136 C G PPP5C Missense_Mutation p.L292V 0.08 deleterious(0.04) probably_damaging(0.952) TCGA-A3-3317-01 19 5137677 5137677 A T KDM4B Missense_Mutation p.T811S 0.22 possibly_damaging(0.874) TCGA-A3-3317-01 19 51517901 51517901 G T KLK10 3'UTR 0.29 TCGA-A3-3317-01 1 109191118 109191119 - A HENMT1 3'UTR 0.30 TCGA-A3-3317-01 1 112251864 112251867 AGTC - RAP1A 3'UTR 0.37 TCGA-A3-3317-01 1 144951999 144951999 C A PDE4DIP Intron 0.07 TCGA-A3-3317-01 1 149857934 149857936 TTG - HIST2H2BE In_Frame_Del p.N85del 0.43 TCGA-A3-3317-01 1 151337664 151337664 C G SELENBP1 Splice_Site p.X379_splice 0.23 TCGA-A3-3317-01 1 169391155 169391155 A C CCDC181 Missense_Mutation p.F172V 0.29 tolerated(0.5) benign(0) TCGA-A3-3317-01 1 170914697 170914697 C T MROH9 5'UTR 0.21 TCGA-A3-3317-01 1 203186906 203186906 C T CHIT1 Missense_Mutation p.G373S 0.29 deleterious(0.03) benign(0.13) TCGA-A3-3317-01 1 211307396 211307396 C T KCNH1 5'Flank 0.31 TCGA-A3-3317-01 1 38344007 38344007 A G INPP5B Intron 0.20 TCGA-A3-3317-01 1 44684379 44684379 A T DMAP1 Silent p.R224R 0.19 TCGA-A3-3317-01 1 48688371 48688379 GCCTCAAAG - SLC5A9 5'UTR 0.20 TCGA-A3-3317-01 1 52867881 52867881 G - ORC1 Frame_Shift_Del p.T6Qfs*3 0.22 TCGA-A3-3317-01 1 63084419 63084419 T C DOCK7 Missense_Mutation p.E547G 0.30 deleterious(0) probably_damaging(0.998) TCGA-A3-3317-01 1 87805242 87805242 G C LMO4 Missense_Mutation p.C87S 0.18 deleterious(0) probably_damaging(1) TCGA-A3-3317-01 20 62065065 62065065 T G KCNQ2 Intron 0.30 TCGA-A3-3317-01 21 45522670 45522670 A T TRAPPC10 Missense_Mutation p.S1120C 0.16 tolerated(0.07) benign(0.049) TCGA-A3-3317-01 2 107460218 107460218 C G ST6GAL2 Silent p.G72G 0.26 TCGA-A3-3317-01 2 152320194 152320194 A C RIF1 Missense_Mutation p.N1387T 0.22 deleterious(0) possibly_damaging(0.899) TCGA-A3-3317-01 2 175612868 175612868 A T CHRNA1 Nonsense_Mutation p.L478* 0.22 TCGA-A3-3317-01 2 207014550 207014551 - T NDUFS1 Frame_Shift_Ins p.A99Sfs*3 0.22 TCGA-A3-3317-01 2 216908708 216908708 G A PECR Missense_Mutation p.P249S 0.26 deleterious(0.03) possibly_damaging(0.762) TCGA-A3-3317-01 2 220072989 220072989 T C ZFAND2B Missense_Mutation p.I149T 0.26 tolerated(0.08) benign(0.001) TCGA-A3-3317-01 2 44554022 44554022 T A PREPL Silent p.L525L 0.24 TCGA-A3-3317-01 2 55813757 55813757 T A SMEK2 Silent p.V371V 0.25 TCGA-A3-3317-01 2 97784175 97784175 A T ANKRD36 Missense_Mutation p.H136L 0.26 deleterious(0) possibly_damaging(0.855) TCGA-A3-3317-01 3 127399635 127399635 C A ABTB1 3'UTR 0.44 TCGA-A3-3317-01 3 169644942 169644942 C A SAMD7 Missense_Mutation p.P298T 0.34 tolerated(0.08) benign(0.084) TCGA-A3-3317-01 3 52438515 52438515 C A BAP1 Nonsense_Mutation p.E402* 0.29 TCGA-A3-3317-01 4 111463966 111463966 C T ENPEP Missense_Mutation p.H623Y 0.24 deleterious(0) probably_damaging(0.982) TCGA-A3-3317-01 4 177248330 177248330 C T SPCS3 Silent p.V104V 0.33 TCGA-A3-3317-01 4 184562426 184562426 A T RWDD4 3'UTR 0.32 TCGA-A3-3317-01 4 3487325 3487325 T - DOK7 Frame_Shift_Del p.C198Afs*48 0.19 TCGA-A3-3317-01 5 131607572 131607572 C T PDLIM4 Silent p.P253P 0.56 TCGA-A3-3317-01 5 140202644 140202644 C T PCDHA5 Silent p.D428D 0.40 TCGA-A3-3317-01 5 159437519 159437519 C G TTC1 5'UTR 0.17 TCGA-A3-3317-01 5 177421243 177421243 C T PROP1 Missense_Mutation p.R69Q 0.23 tolerated(0.07) probably_damaging(0.996) TCGA-A3-3317-01 5 40716581 40716581 A C TTC33 Missense_Mutation p.V152G 0.21 tolerated(0.16) benign(0.386) TCGA-A3-3317-01 5 52221113 52221113 C G ITGA1 Silent p.P803P 0.22 TCGA-A3-3317-01 5 68715203 68715203 A - MARVELD2 5'UTR 0.28 TCGA-A3-3317-01 5 78076227 78076227 C T ARSB Nonsense_Mutation p.W532* 0.24 TCGA-A3-3317-01 5 96139528 96139528 G A ERAP1 Silent p.S34S 0.30 TCGA-A3-3317-01 6 161032706 161032706 C A LPA Nonsense_Mutation p.G831* 0.35 TCGA-A3-3317-01 6 161054897 161054897 C A LPA Nonsense_Mutation p.G375* 0.28 TCGA-A3-3317-01 6 26469143 26469143 G C BTN2A1 3'UTR 0.18 TCGA-A3-3317-01 6 33248690 33248690 G A WDR46 Missense_Mutation p.T397I 0.26 deleterious(0.03) benign(0.013) TCGA-A3-3317-01 6 33248691 33248691 T A WDR46 Missense_Mutation p.T397S 0.26 tolerated(0.98) benign(0.001) TCGA-A3-3317-01 6 33374604 33374604 G T KIFC1 Silent p.L643L 0.20 TCGA-A3-3317-01 7 6442071 6442071 G C RAC1 Silent p.L210L 0.28 TCGA-A3-3317-01 7 6731607 6731607 C T ZNF12 Silent p.E322E 0.18 TCGA-A3-3317-01 8 13072237 13072237 C A DLC1 Intron 0.23 TCGA-A3-3317-01 8 15531300 15531300 C T TUSC3 Silent p.I251I 0.20 TCGA-A3-3317-01 9 139410507 139410507 C T NOTCH1 Missense_Mutation p.C532Y 0.24 deleterious(0) probably_damaging(1) TCGA-A3-3317-01 X 123217328 123217328 T - STAG2 Frame_Shift_Del p.L995* 0.38 TCGA-A3-3317-01 X 153906344 153906344 A C GAB3 3'UTR 0.56 TCGA-A3-3317-01 X 15549469 15549469 A G BMX Missense_Mutation p.M320V 0.45 tolerated(0.34) benign(0.065) TCGA-A3-3319-01 10 104231152 104231152 A G TMEM180 Missense_Mutation p.Q276R 0.22 deleterious(0) probably_damaging(0.998) TCGA-A3-3319-01 10 17195548 17195548 G C TRDMT1 Missense_Mutation p.P345A 0.16 deleterious(0) probably_damaging(0.972) TCGA-A3-3319-01 10 75563696 75563696 T C NDST2 Missense_Mutation p.E641G 0.30 deleterious(0) probably_damaging(1) TCGA-A3-3319-01 11 111779431 111779431 T C CRYAB 3'UTR 0.24 TCGA-A3-3319-01 11 1977698 1977698 C T MRPL23 3'UTR 0.43 TCGA-A3-3319-01 11 68193567 68193567 C G LRP5 Silent p.T1183T 0.21 TCGA-A3-3319-01 11 68355413 68355413 A G PPP6R3 Missense_Mutation p.M551V 0.23 tolerated(0.26) benign(0.073) TCGA-A3-3319-01 11 71277393 71277393 T C KRTAP5-10 3'UTR 0.33 TCGA-A3-3319-01 11 75280027 75280027 C T SERPINH1 Silent p.I255I 0.20 TCGA-A3-3319-01 11 92430597 92430597 G C FAT3 Missense_Mutation p.E1219Q 0.05 probably_damaging(1) TCGA-A3-3319-01 12 129285429 129285430 - A SLC15A4 Frame_Shift_Ins p.G462Wfs*65 0.38 TCGA-A3-3319-01 12 1299182 1299182 A G ERC1 Missense_Mutation p.K772R 0.11 tolerated(0.07) probably_damaging(0.992) TCGA-A3-3319-01 12 21036504 21036504 A G SLCO1B3 Silent p.T550T 0.35 TCGA-A3-3319-01 12 32137779 32137779 T G KIAA1551 Missense_Mutation p.L1297W 0.23 tolerated(0.06) probably_damaging(1) TCGA-A3-3319-01 12 62749239 62749239 A C USP15 Missense_Mutation p.M300L 0.36 deleterious(0.01) possibly_damaging(0.869) TCGA-A3-3319-01 12 7174353 7174353 G A C1S Missense_Mutation p.G333D 0.35 tolerated(0.56) benign(0.015) TCGA-A3-3319-01 13 31903770 31903770 C A B3GALTL Missense_Mutation p.Q488K 0.25 tolerated_low_confidence(0.39) benign(0.001) TCGA-A3-3319-01 13 52518307 52518307 C T ATP7B Missense_Mutation p.G1061R 0.21 deleterious(0) probably_damaging(1) TCGA-A3-3319-01 13 74420129 74420129 G T KLF12 Missense_Mutation p.P169T 0.23 tolerated(0.13) probably_damaging(0.997) TCGA-A3-3319-01 14 21360444 21360444 C T RNASE3 3'UTR 0.13 TCGA-A3-3319-01 14 80669073 80669073 T A DIO2 Missense_Mutation p.N297Y 0.51 tolerated(1) benign(0.077) TCGA-A3-3319-01 15 82336581 82336581 C A MEX3B Missense_Mutation p.M210I 0.38 deleterious(0) possibly_damaging(0.474) TCGA-A3-3319-01 16 20648507 20648507 G A ACSM1 Intron 0.43 TCGA-A3-3319-01 16 24869990 24869990 A G SLC5A11 Missense_Mutation p.Q9R 0.22 tolerated(0.49) benign(0.001) TCGA-A3-3319-01 16 65038653 65038653 C T CDH11 Silent p.E40E 0.35 TCGA-A3-3319-01 16 90001521 90001521 C T TUBB3 Missense_Mutation p.T221I 0.31 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-A3-3319-01 17 16842795 16842795 C T TNFRSF13B 3'UTR 0.24 TCGA-A3-3319-01 17 18062259 18062259 C T MYO15A Missense_Mutation p.S3035F 0.21 unknown(0) TCGA-A3-3319-01 17 20000054 20000054 C T SPECC1 Silent p.S30S 0.21 TCGA-A3-3319-01 17 25936969 25936969 T C KSR1 Intron 0.28 TCGA-A3-3319-01 17 28444131 28444131 A G NSRP1 Intron 0.22 TCGA-A3-3319-01 17 29161396 29161396 G T ATAD5 Silent p.T99T 0.26 TCGA-A3-3319-01 17 35880695 35880695 A - SYNRG Frame_Shift_Del p.N1241Kfs*12 0.20 TCGA-A3-3319-01 17 39994097 39994097 A T KLHL10 5'UTR 0.27 TCGA-A3-3319-01 17 48243426 48243427 - AA SGCA Frame_Shift_Ins p.P9Qfs*39 0.31 TCGA-A3-3319-01 17 72443073 72443073 A G GPRC5C Missense_Mutation p.E456G 0.19 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-A3-3319-01 17 78444520 78444520 C A NPTX1 3'UTR 0.30 TCGA-A3-3319-01 19 11144110 11144110 G A SMARCA4 Missense_Mutation p.A1231T 0.25 possibly_damaging(0.488) TCGA-A3-3319-01 19 15226438 15226438 C T ILVBL Silent p.Q553Q 0.05 TCGA-A3-3319-01 19 17838790 17838790 T C MAP1S Missense_Mutation p.L866P 0.26 tolerated(0.36) benign(0.009) TCGA-A3-3319-01 19 17838796 17838796 G C MAP1S Missense_Mutation p.R868P 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-A3-3319-01 19 34791500 34791500 T C KIAA0355 Missense_Mutation p.L41P 0.23 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-A3-3319-01 19 4352949 4352949 A G MPND Missense_Mutation p.D196G 0.22 tolerated(0.26) benign(0.005) TCGA-A3-3319-01 19 44771142 44771157 GCGGGGTACAGCCTAG - ZNF233 Intron 0.31 TCGA-A3-3319-01 19 50363543 50363543 C T PTOV1 3'UTR 0.28 TCGA-A3-3319-01 19 51466690 51466690 G A KLK6 Nonsense_Mutation p.Q105* 0.21 TCGA-A3-3319-01 19 51828699 51828699 T C IGLON5 Missense_Mutation p.V164A 0.09 deleterious(0) possibly_damaging(0.792) TCGA-A3-3319-01 19 52084648 52084648 C T ZNF175 Missense_Mutation p.S26L 0.21 tolerated(0.14) benign(0) TCGA-A3-3319-01 1 10238756 10238758 GGG - UBE4B In_Frame_Del p.G1194del 0.32 TCGA-A3-3319-01 1 114437685 114437686 TG - AP4B1 3'UTR 0.26 TCGA-A3-3319-01 1 150459930 150459930 G A TARS2 Missense_Mutation p.A2T 0.25 tolerated_low_confidence(0.05) benign(0.039) TCGA-A3-3319-01 1 155450216 155450216 G C ASH1L Silent p.V815V 0.25 TCGA-A3-3319-01 1 156047265 156047265 G A MEX3A Silent p.P221P 0.20 TCGA-A3-3319-01 1 172113783 172113783 C T DNM3 Intron 0.15 TCGA-A3-3319-01 1 177249921 177249921 C T BRINP2 Missense_Mutation p.R537W 0.29 deleterious(0) probably_damaging(0.998) TCGA-A3-3319-01 1 204943409 204943409 C T NFASC Missense_Mutation p.T461I 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-A3-3319-01 1 228459673 228459673 C T OBSCN Nonsense_Mutation p.Q1913* 0.14 TCGA-A3-3319-01 1 33245096 33245096 G C YARS Missense_Mutation p.L455V 0.29 tolerated(0.12) possibly_damaging(0.536) TCGA-A3-3319-01 1 43868851 43868851 G A SZT2 Missense_Mutation p.E11K 0.24 tolerated(0.3) possibly_damaging(0.886) TCGA-A3-3319-01 1 44461642 44461642 T A CCDC24 Missense_Mutation p.L245H 0.26 tolerated(0.16) benign(0.027) TCGA-A3-3319-01 1 54428053 54428053 A G LRRC42 Missense_Mutation p.N300D 0.32 tolerated(0.65) benign(0.025) TCGA-A3-3319-01 1 78470926 78470926 A T DNAJB4 Missense_Mutation p.K44N 0.28 deleterious(0) possibly_damaging(0.718) TCGA-A3-3319-01 20 44439917 44439917 C G DNTTIP1 3'UTR 0.17 TCGA-A3-3319-01 20 47266546 47266546 C G PREX1 Missense_Mutation p.D1006H 0.14 deleterious(0.05) probably_damaging(0.99) TCGA-A3-3319-01 20 49576416 49576416 A T MOCS3 Missense_Mutation p.D346V 0.44 deleterious(0.05) benign(0.187) TCGA-A3-3319-01 21 38460511 38460517 GTATATG - TTC3 Frame_Shift_Del p.I69Vfs*17 0.32 TCGA-A3-3319-01 22 18368682 18368682 C A MICAL3 Nonsense_Mutation p.E735* 0.32 TCGA-A3-3319-01 22 33700423 33700423 C T LARGE Missense_Mutation p.A508T 0.19 tolerated(0.06) probably_damaging(1) TCGA-A3-3319-01 22 39712965 39712965 A C RPL3 Intron 0.27 TCGA-A3-3319-01 22 42172238 42172238 C A MEI1 Missense_Mutation p.L893M 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-A3-3319-01 22 45745648 45745648 A C SMC1B Missense_Mutation p.D1152E 0.20 deleterious(0) probably_damaging(0.983) TCGA-A3-3319-01 2 101889409 101889409 A G CNOT11 3'Flank 0.21 TCGA-A3-3319-01 2 103380788 103380788 C T TMEM182 Missense_Mutation p.T78I 0.19 deleterious(0) probably_damaging(0.992) TCGA-A3-3319-01 2 20823713 20823713 T A HS1BP3 Missense_Mutation p.E288V 0.31 tolerated(0.19) benign(0.157) TCGA-A3-3319-01 2 3727534 3727534 C T ALLC Missense_Mutation p.T83M 0.19 tolerated(0.08) benign(0.254) TCGA-A3-3319-01 2 61413601 61413601 C G AHSA2 Missense_Mutation p.I71M 0.23 deleterious(0) possibly_damaging(0.474) TCGA-A3-3319-01 2 80530941 80530941 C G LRRTM1 Missense_Mutation p.D2H 0.28 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-A3-3319-01 2 95846903 95846903 A G ZNF2 Silent p.S110S 0.06 TCGA-A3-3319-01 2 97475200 97475200 T G CNNM4 Silent p.L758L 0.21 TCGA-A3-3319-01 3 136046479 136046479 T C PCCB Missense_Mutation p.Y455H 0.42 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A3-3319-01 3 153973334 153973334 T C ARHGEF26 3'UTR 0.28 TCGA-A3-3319-01 3 176769354 176769354 C T TBL1XR1 Missense_Mutation p.G122E 0.40 tolerated(1) benign(0.017) TCGA-A3-3319-01 3 51667705 51667705 T A RAD54L2 Nonsense_Mutation p.L313* 0.31 TCGA-A3-3319-01 3 52003893 52003894 GA - ABHD14B Intron 0.36 TCGA-A3-3319-01 4 114213643 114213643 T C ANK2 Silent p.H783H 0.23 TCGA-A3-3319-01 4 15556749 15556749 C T CC2D2A Silent p.D847D 0.40 TCGA-A3-3319-01 4 30724623 30724623 G T PCDH7 Missense_Mutation p.D527Y 0.22 deleterious(0) probably_damaging(1) TCGA-A3-3319-01 4 5733355 5733355 C T EVC Silent p.N196N 0.12 TCGA-A3-3319-01 4 57522158 57522158 C A HOPX Silent p.A21A 0.15 TCGA-A3-3319-01 4 83788105 83788105 T C SEC31A Silent p.S351S 0.24 TCGA-A3-3319-01 5 134126192 134126192 G T DDX46 Missense_Mutation p.V526F 0.05 deleterious(0.01) probably_damaging(0.914) TCGA-A3-3319-01 5 141362998 141362998 A G RNF14 Missense_Mutation p.R373G 0.23 deleterious(0.03) benign(0.042) TCGA-A3-3319-01 5 141363016 141363016 T C RNF14 Missense_Mutation p.Y379H 0.27 deleterious(0.03) possibly_damaging(0.729) TCGA-A3-3319-01 5 90079095 90079095 G A GPR98 Silent p.G4462G 0.58 TCGA-A3-3319-01 5 96503556 96503556 C T RIOK2 Missense_Mutation p.D338N 0.24 tolerated(0.08) benign(0.043) TCGA-A3-3319-01 5 98228309 98228309 T C CHD1 Silent p.K700K 0.48 TCGA-A3-3319-01 7 37262227 37262227 C G ELMO1 Missense_Mutation p.R258T 0.25 deleterious(0.02) benign(0.026) TCGA-A3-3319-01 8 101252794 101252795 CT - SPAG1 Frame_Shift_Del p.L816Qfs*6 0.30 TCGA-A3-3319-01 8 118185004 118185004 G C SLC30A8 3'UTR 0.45 TCGA-A3-3319-01 8 66619369 66619369 A G MTFR1 Silent p.R214R 0.16 TCGA-A3-3319-01 8 8233967 8233967 C G SGK223 Missense_Mutation p.S651T 0.10 benign(0.054) TCGA-A3-3319-01 8 99114990 99114990 T A HRSP12 3'UTR 0.39 TCGA-A3-3319-01 9 100975615 100975615 T - TBC1D2 Intron 0.36 TCGA-A3-3319-01 9 32433772 32433772 T A ACO1 Missense_Mutation p.L633Q 0.39 deleterious(0.04) benign(0.315) TCGA-A3-3319-01 9 35385805 35385805 A T UNC13B Missense_Mutation p.M905L 0.30 tolerated(0.09) probably_damaging(0.925) TCGA-A3-3319-01 X 47422454 47422454 C A ARAF Missense_Mutation p.R30S 0.25 deleterious(0) probably_damaging(0.971) TCGA-A3-3319-01 X 86890606 86890606 T - KLHL4 Frame_Shift_Del p.S586Qfs*37 0.44 TCGA-A3-3320-01 10 46967610 46967611 - C SYT15 Frame_Shift_Ins p.E156Gfs*3 0.20 TCGA-A3-3320-01 10 74684103 74684103 C A OIT3 Nonsense_Mutation p.C356* 0.11 TCGA-A3-3320-01 10 93011143 93011144 TA - PCGF5 Frame_Shift_Del p.I141Lfs*8 0.34 TCGA-A3-3320-01 10 95093560 95093560 G A MYOF Silent p.Y1558Y 0.09 TCGA-A3-3320-01 10 99186086 99186086 C G PGAM1 Missense_Mutation p.L8V 0.25 deleterious(0.01) benign(0.292) TCGA-A3-3320-01 11 117280582 117280582 C A CEP164 Missense_Mutation p.Q1333K 0.38 deleterious(0.03) benign(0.21) TCGA-A3-3320-01 11 121437700 121437700 C A SORL1 Missense_Mutation p.A1034D 0.15 deleterious(0) benign(0.272) TCGA-A3-3320-01 11 47289515 47289515 A C NR1H3 Missense_Mutation p.N347T 0.29 tolerated(0.37) possibly_damaging(0.747) TCGA-A3-3320-01 11 5536862 5536862 C T UBQLNL Silent p.L270L 0.04 TCGA-A3-3320-01 11 57077336 57077336 T - TNKS1BP1 Frame_Shift_Del p.Q950Rfs*9 0.41 TCGA-A3-3320-01 11 5841740 5841740 C A OR52N2 Silent p.R59R 0.38 TCGA-A3-3320-01 11 60701064 60701064 C A TMEM132A Silent p.G470G 0.25 TCGA-A3-3320-01 11 63679957 63679957 C T RCOR2 Silent p.G359G 0.11 TCGA-A3-3320-01 11 70184559 70184559 G A PPFIA1 Missense_Mutation p.G524D 0.30 tolerated(0.05) benign(0.002) TCGA-A3-3320-01 11 93465666 93465666 A C KIAA1731 3'Flank 0.34 TCGA-A3-3320-01 12 102107933 102107933 T A CHPT1 Silent p.I113I 0.34 TCGA-A3-3320-01 13 103343225 103343226 - A METTL21C Frame_Shift_Ins p.A74Cfs*45 0.29 TCGA-A3-3320-01 13 19999143 19999143 G C TPTE2 Nonsense_Mutation p.Y470* 0.12 TCGA-A3-3320-01 14 23597394 23597394 C G SLC7A8 Silent p.L425L 0.26 TCGA-A3-3320-01 14 24632285 24632285 T A IRF9 Silent p.V97V 0.05 TCGA-A3-3320-01 14 70925009 70925009 A T ADAM21 Missense_Mutation p.N265Y 0.49 deleterious(0) probably_damaging(0.996) TCGA-A3-3320-01 14 86089641 86089641 A T FLRT2 Nonsense_Mutation p.K595* 0.38 TCGA-A3-3320-01 15 33358779 33358779 T G FMN1 Missense_Mutation p.E436A 0.23 deleterious(0) unknown(0) TCGA-A3-3320-01 15 59910566 59910566 G A GCNT3 Silent p.E43E 0.35 TCGA-A3-3320-01 15 63915942 63915942 G T HERC1 Silent p.T4531T 0.33 TCGA-A3-3320-01 16 596909 596909 C A CAPN15 Missense_Mutation p.S24Y 0.40 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-A3-3320-01 16 68386205 68386205 A - PRMT7 Frame_Shift_Del p.N490Tfs*21 0.39 TCGA-A3-3320-01 16 700616 700616 C G WDR90 Missense_Mutation p.L156V 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-A3-3320-01 16 75276901 75276901 C A BCAR1 Nonsense_Mutation p.E80* 0.21 TCGA-A3-3320-01 16 75276902 75276902 C A BCAR1 Silent p.L79L 0.22 TCGA-A3-3320-01 16 89929985 89929985 C A SPIRE2 Missense_Mutation p.N559K 0.35 tolerated(0.33) benign(0.013) TCGA-A3-3320-01 16 9856877 9856878 AA - GRIN2A 3'UTR 0.26 TCGA-A3-3320-01 17 15449215 15449215 T A TVP23C Missense_Mutation p.N116Y 0.21 deleterious(0.01) possibly_damaging(0.652) TCGA-A3-3320-01 17 37821618 37821618 T A TCAP Silent p.A2A 0.35 TCGA-A3-3320-01 17 44127972 44127981 GTGAATTTCG - KANSL1 Frame_Shift_Del p.E647Mfs*20 0.44 TCGA-A3-3320-01 17 49726541 49726541 A G CA10 Splice_Site p.X212_splice 0.34 TCGA-A3-3320-01 17 72343936 72343936 C T KIF19 Silent p.S315S 0.31 TCGA-A3-3320-01 17 73745083 73745083 C T ITGB4 Silent p.H1091H 0.53 TCGA-A3-3320-01 17 76482488 76482488 G T DNAH17 Missense_Mutation p.R2293S 0.34 possibly_damaging(0.554) TCGA-A3-3320-01 17 79098648 79098648 C T AATK Missense_Mutation p.E281K 0.17 deleterious(0.03) probably_damaging(0.934) TCGA-A3-3320-01 19 1004979 1004979 C T GRIN3B Silent p.F493F 0.09 TCGA-A3-3320-01 19 10225224 10225224 T C PPAN-P2RY11 Missense_Mutation p.L732P 0.42 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-A3-3320-01 19 11436252 11436252 A T RAB3D Missense_Mutation p.F161Y 0.35 tolerated(0.11) benign(0.088) TCGA-A3-3320-01 19 13263991 13263991 T C IER2 5'UTR 0.25 TCGA-A3-3320-01 19 21300402 21300402 C A ZNF714 Missense_Mutation p.S311Y 0.30 deleterious(0.02) possibly_damaging(0.66) TCGA-A3-3320-01 19 47539306 47539306 C A NPAS1 Missense_Mutation p.P203T 0.37 tolerated(0.18) benign(0.001) TCGA-A3-3320-01 19 57955937 57955937 A G ZNF749 Missense_Mutation p.K474R 0.43 tolerated(0.32) unknown(0) TCGA-A3-3320-01 1 100387181 100387187 ATTCTTG - AGL Frame_Shift_Del p.I1525Rfs*20 0.12 TCGA-A3-3320-01 1 109554267 109554267 T C WDR47 Missense_Mutation p.Y141C 0.08 deleterious(0) probably_damaging(0.997) TCGA-A3-3320-01 1 12907356 12907356 C T HNRNPCL1 Missense_Mutation p.G263R 0.16 deleterious(0.01) possibly_damaging(0.739) TCGA-A3-3320-01 1 152279938 152279938 C G FLG Missense_Mutation p.G2475A 0.23 probably_damaging(0.996) TCGA-A3-3320-01 1 153274993 153274993 A G PGLYRP3 Missense_Mutation p.I207T 0.11 tolerated(0.07) probably_damaging(0.922) TCGA-A3-3320-01 1 20009748 20009748 C G TMCO4 Missense_Mutation p.G564R 0.38 tolerated_low_confidence(0.09) benign(0.004) TCGA-A3-3320-01 1 27099852 27099852 C A ARID1A Missense_Mutation p.P1244H 0.37 unknown(0) TCGA-A3-3320-01 1 44425962 44425962 G A IPO13 Silent p.K690K 0.10 TCGA-A3-3320-01 1 55251692 55251692 T C TTC22 Silent p.P328P 0.37 TCGA-A3-3320-01 1 57258476 57258476 C A C1orf168 Nonsense_Mutation p.E4* 0.09 TCGA-A3-3320-01 1 70144085 70144085 A G LRRC7 Silent p.G8G 0.43 TCGA-A3-3320-01 20 30556225 30556225 C G XKR7 Missense_Mutation p.L83V 0.36 tolerated(0.1) possibly_damaging(0.641) TCGA-A3-3320-01 20 948634 948634 C G RSPO4 Missense_Mutation p.G76A 0.30 deleterious(0) probably_damaging(1) TCGA-A3-3320-01 21 11038952 11038952 A T BAGE2 RNA 0.06 TCGA-A3-3320-01 22 37414210 37414210 G C TST Missense_Mutation p.F188L 0.29 deleterious(0) benign(0.403) TCGA-A3-3320-01 22 41926704 41926704 G - POLR3H Frame_Shift_Del p.P183Rfs*61 0.59 TCGA-A3-3320-01 22 42180387 42180387 T C MEI1 Silent p.A1044A 0.31 TCGA-A3-3320-01 2 103095413 103095413 C A SLC9A4 Silent p.V124V 0.39 TCGA-A3-3320-01 2 178097099 178097099 A G NFE2L2 Intron 0.26 TCGA-A3-3320-01 2 178576587 178576587 A T PDE11A Missense_Mutation p.I688N 0.22 tolerated(0.12) probably_damaging(0.986) TCGA-A3-3320-01 2 179582323 179582323 G A TTN Silent p.H8426H 0.29 TCGA-A3-3320-01 2 189914113 189914113 G A COL5A2 Missense_Mutation p.P1036L 0.32 unknown(0) TCGA-A3-3320-01 2 204824393 204824393 T C ICOS 3'UTR 0.06 TCGA-A3-3320-01 2 64779884 64779884 G C AFTPH Missense_Mutation p.D426H 0.14 deleterious(0.02) possibly_damaging(0.824) TCGA-A3-3320-01 3 121724198 121724198 T A ILDR1 Missense_Mutation p.D91V 0.18 deleterious(0) probably_damaging(0.996) TCGA-A3-3320-01 3 128890023 128890023 G A CNBP Silent p.G107G 0.39 TCGA-A3-3320-01 3 142168329 142168331 TCC CT ATR Frame_Shift_Del p.A2627Lfs*28 0.27 TCGA-A3-3320-01 3 151045862 151045862 G T P2RY13 Missense_Mutation p.L328I 0.40 deleterious(0.05) benign(0.323) TCGA-A3-3320-01 3 155546088 155546088 C A SLC33A1 Nonsense_Mutation p.G521* 0.26 TCGA-A3-3320-01 3 182733066 182733066 G A MCCC1 3'UTR 0.15 TCGA-A3-3320-01 3 38163910 38163910 G A DLEC1 3'UTR 0.63 TCGA-A3-3320-01 3 52649373 52649373 T A PBRM1 Nonsense_Mutation p.K640* 0.24 TCGA-A3-3320-01 4 120214394 120214394 A G USP53 3'UTR 0.14 TCGA-A3-3320-01 4 99823113 99823113 A T EIF4E Missense_Mutation p.N13K 0.32 tolerated_low_confidence(0.49) benign(0.085) TCGA-A3-3320-01 5 111071196 111071196 G T NREP Nonsense_Mutation p.Y48* 0.19 TCGA-A3-3320-01 5 154278145 154278145 G A GEMIN5 Missense_Mutation p.S1067L 0.04 deleterious(0) probably_damaging(0.999) TCGA-A3-3320-01 5 179222879 179222879 G C LTC4S Intron 0.12 TCGA-A3-3320-01 5 66462356 66462356 G A MAST4 Missense_Mutation p.R2450Q 0.39 possibly_damaging(0.745) TCGA-A3-3320-01 5 70952871 70952871 T C MCCC2 3'UTR 0.25 TCGA-A3-3320-01 6 100841464 100841464 C A SIM1 Missense_Mutation p.W490L 0.15 deleterious_low_confidence(0) benign(0.266) TCGA-A3-3320-01 6 170114904 170114904 A - PHF10 Frame_Shift_Del p.L243Cfs*37 0.09 TCGA-A3-3320-01 6 31632107 31632107 T C GPANK1 Missense_Mutation p.D50G 0.34 tolerated(0.16) benign(0.003) TCGA-A3-3320-01 6 34789455 34789455 A T UHRF1BP1 Nonsense_Mutation p.K24* 0.48 TCGA-A3-3320-01 6 43515440 43515440 G A XPO5 Silent p.L689L 0.32 TCGA-A3-3320-01 7 102004777 102004777 C A PRKRIP1 5'UTR 0.43 TCGA-A3-3320-01 7 135370277 135370277 C T SLC13A4 Missense_Mutation p.C533Y 0.09 deleterious(0) probably_damaging(0.989) TCGA-A3-3320-01 7 86848862 86848862 C G TMEM243 5'UTR 0.39 TCGA-A3-3320-01 7 99499621 99499621 C G TRIM4 Intron 0.24 TCGA-A3-3320-01 8 141727751 141727751 T A PTK2 Missense_Mutation p.R696S 0.40 deleterious(0.01) possibly_damaging(0.557) TCGA-A3-3320-01 8 145623927 145623927 T A CPSF1 Missense_Mutation p.E580D 0.11 tolerated(0.2) benign(0.082) TCGA-A3-3320-01 8 145689375 145689375 C A CYHR1 Intron 0.18 TCGA-A3-3320-01 9 114134741 114134741 A T KIAA0368 Nonsense_Mutation p.L1677* 0.33 TCGA-A3-3320-01 9 126783560 126783560 G T LHX2 Missense_Mutation p.G304C 0.36 deleterious(0) probably_damaging(0.999) TCGA-A3-3320-01 9 131872858 131872858 G A CRAT 5'UTR 0.65 TCGA-A3-3320-01 9 134351423 134351423 C T PRRC2B Missense_Mutation p.R1303C 0.04 deleterious(0) probably_damaging(0.999) TCGA-A3-3320-01 9 139369264 139369264 T C SEC16A Missense_Mutation p.E935G 0.39 tolerated(0.37) benign(0.003) TCGA-A3-3320-01 9 139873535 139873535 G A PTGDS Missense_Mutation p.V69M 0.28 deleterious(0) probably_damaging(0.978) TCGA-A3-3320-01 9 140139965 140139965 G A FAM166A Missense_Mutation p.P106S 0.11 tolerated(0.06) benign(0.011) TCGA-A3-3320-01 9 35449946 35449946 G C ATP8B5P RNA 0.31 TCGA-A3-3320-01 X 129148444 129148444 C A BCORL1 Missense_Mutation p.P566T 0.38 benign(0.293) TCGA-A3-3320-01 X 12937418 12937418 C T TLR8 Nonsense_Mutation p.Q87* 0.05 TCGA-A3-3320-01 X 35821205 35821205 C A MAGEB16 Missense_Mutation p.H298N 0.10 tolerated(0.2) benign(0.02) TCGA-A3-3320-01 X 54785300 54785300 C T ITIH6 Missense_Mutation p.G403S 0.38 tolerated(0.12) possibly_damaging(0.632) TCGA-A3-3320-01 X 77380396 77380396 G A PGK1 Missense_Mutation p.S321N 0.10 tolerated(0.57) benign(0.001) TCGA-A3-3320-01 X 77913051 77913051 C A ZCCHC5 Missense_Mutation p.W289C 0.23 deleterious(0.05) benign(0) TCGA-A3-3322-01 10 123844479 123844479 C - TACC2 Frame_Shift_Del p.L823Yfs*105 0.24 TCGA-A3-3322-01 10 27431334 27431334 C G YME1L1 Missense_Mutation p.D195H 0.31 tolerated(0.06) benign(0.005) TCGA-A3-3322-01 11 113194723 113194723 A C TTC12 Missense_Mutation p.E77A 0.28 tolerated(0.29) benign(0.028) TCGA-A3-3322-01 11 114451052 114451052 C T NXPE4 Missense_Mutation p.V301I 0.34 tolerated(0.55) benign(0.006) TCGA-A3-3322-01 12 104332226 104332226 A G HSP90B1 Missense_Mutation p.K322E 0.27 tolerated(0.21) benign(0.318) TCGA-A3-3322-01 12 57118311 57118311 A C NACA Intron 0.35 TCGA-A3-3322-01 14 100129224 100129224 C G HHIPL1 Missense_Mutation p.S505C 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-A3-3322-01 14 104208221 104208222 - G PPP1R13B Frame_Shift_Ins p.S577Kfs*15 0.35 TCGA-A3-3322-01 15 79749416 79749416 C T KIAA1024 Silent p.N309N 0.33 TCGA-A3-3322-01 16 2132493 2132493 G A TSC2 Missense_Mutation p.V1291I 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-A3-3322-01 16 90099333 90099333 G A GAS8 Splice_Site p.X165_splice 0.29 TCGA-A3-3322-01 17 30665271 30665271 T G C17orf75 Missense_Mutation p.E149D 0.29 tolerated(0.26) benign(0.024) TCGA-A3-3322-01 17 37650846 37650846 G A CDK12 Missense_Mutation p.R773H 0.19 probably_damaging(0.999) TCGA-A3-3322-01 17 40722038 40722038 C A MLX Missense_Mutation p.P226H 0.24 deleterious(0) probably_damaging(0.977) TCGA-A3-3322-01 17 40844591 40844591 G C CNTNAP1 Missense_Mutation p.E869Q 0.22 deleterious(0.02) possibly_damaging(0.553) TCGA-A3-3322-01 17 65184580 65184580 T C HELZ Silent p.Q339Q 0.32 TCGA-A3-3322-01 18 3502638 3502638 A G DLGAP1 Silent p.P859P 0.34 TCGA-A3-3322-01 18 60241796 60241796 A G ZCCHC2 Missense_Mutation p.T828A 0.40 tolerated(1) benign(0.002) TCGA-A3-3322-01 18 64235860 64235860 T - CDH19 Frame_Shift_Del p.R95Efs*21 0.27 TCGA-A3-3322-01 19 11098575 11098575 G C SMARCA4 Missense_Mutation p.E365Q 0.34 possibly_damaging(0.694) TCGA-A3-3322-01 19 51581198 51581198 C - KLK14 3'UTR 0.25 TCGA-A3-3322-01 19 52496685 52496685 G A ZNF615 Silent p.G559G 0.36 TCGA-A3-3322-01 19 52618981 52618981 C T ZNF616 Missense_Mutation p.R479Q 0.29 tolerated(0.31) benign(0.005) TCGA-A3-3322-01 19 58198816 58198816 T C ZNF551 Silent p.Y391Y 0.40 TCGA-A3-3322-01 1 149398908 149398908 G C HIST2H3PS2 3'Flank 0.39 TCGA-A3-3322-01 1 154027277 154027277 T G NUP210L Missense_Mutation p.K1091T 0.40 deleterious(0) possibly_damaging(0.904) TCGA-A3-3322-01 1 154027278 154027278 T A NUP210L Nonsense_Mutation p.K1091* 0.43 TCGA-A3-3322-01 1 201354880 201354880 T G LAD1 Silent p.R360R 0.26 TCGA-A3-3322-01 1 201354881 201354881 C A LAD1 Missense_Mutation p.R360L 0.26 tolerated(0.6) benign(0.002) TCGA-A3-3322-01 1 235922372 235922372 G A LYST Missense_Mutation p.R2261C 0.32 deleterious_low_confidence(0.02) benign(0.01) TCGA-A3-3322-01 1 26801118 26801118 G A HMGN2 Missense_Mutation p.G66E 0.40 tolerated(0.07) possibly_damaging(0.475) TCGA-A3-3322-01 1 67101650 67101650 C T SGIP1 Silent p.P41P 0.20 TCGA-A3-3322-01 1 67861487 67861487 G C IL12RB2 Missense_Mutation p.K768N 0.14 deleterious(0) probably_damaging(0.917) TCGA-A3-3322-01 21 35893781 35893781 C G RCAN1 Intron 0.35 TCGA-A3-3322-01 21 47769001 47769001 C A PCNT Missense_Mutation p.Q370K 0.20 possibly_damaging(0.484) TCGA-A3-3322-01 22 44342402 44342402 A G PNPLA3 3'UTR 0.24 TCGA-A3-3322-01 22 47116101 47116101 G A CERK Silent p.H87H 0.43 TCGA-A3-3322-01 2 204356027 204356027 T G RAPH1 Missense_Mutation p.K46Q 0.31 possibly_damaging(0.87) TCGA-A3-3322-01 2 27663340 27663340 C A NRBP1 Silent p.I369I 0.28 TCGA-A3-3322-01 2 3691555 3691555 C T COLEC11 Silent p.P235P 0.38 TCGA-A3-3322-01 2 42909669 42909669 C G MTA3 Missense_Mutation p.S277R 0.28 deleterious(0.02) benign(0.271) TCGA-A3-3322-01 2 48032817 48032817 C A MSH6 Missense_Mutation p.A1206E 0.33 tolerated(0.81) benign(0.016) TCGA-A3-3322-01 2 71368393 71368393 C G MPHOSPH10 Missense_Mutation p.P447R 0.32 deleterious(0) probably_damaging(0.999) TCGA-A3-3322-01 3 100058770 100058770 C G NIT2 Missense_Mutation p.L80V 0.52 tolerated(0.15) benign(0.044) TCGA-A3-3322-01 3 32775009 32775009 C G CNOT10 Nonsense_Mutation p.S497* 0.07 TCGA-A3-3322-01 3 52610585 52610585 T - PBRM1 Frame_Shift_Del p.E1197Kfs*5 0.42 TCGA-A3-3322-01 3 54962027 54962027 G C LRTM1 5'UTR 0.49 TCGA-A3-3322-01 3 88189697 88189697 A G ZNF654 Missense_Mutation p.M413V 0.40 tolerated(0.21) benign(0.051) TCGA-A3-3322-01 4 100125313 100125313 A T ADH6 3'UTR 0.44 TCGA-A3-3322-01 4 111409738 111409745 AATCTTTT - ENPEP Frame_Shift_Del p.K229Tfs*4 0.37 TCGA-A3-3322-01 4 152022142 152022142 G A RPS3A Missense_Mutation p.G61D 0.31 deleterious(0.01) possibly_damaging(0.488) TCGA-A3-3322-01 5 138715429 138715429 G T SLC23A1 Missense_Mutation p.A292E 0.27 deleterious(0) probably_damaging(0.911) TCGA-A3-3322-01 6 27782408 27782408 T G HIST1H2AJ Missense_Mutation p.K37N 0.31 tolerated_low_confidence(0.07) probably_damaging(0.991) TCGA-A3-3322-01 6 29694668 29694668 G A HLA-F Missense_Mutation p.V349M 0.27 tolerated_low_confidence(0.07) benign(0.011) TCGA-A3-3322-01 6 31599818 31599818 A C PRRC2A Missense_Mutation p.E1123A 0.29 unknown(0) TCGA-A3-3322-01 6 57185310 57185310 C T PRIM2 Silent p.Y70Y 0.33 TCGA-A3-3322-01 7 1487214 1487214 C T MICALL2 Silent p.K174K 0.40 TCGA-A3-3322-01 7 38816289 38816289 G A VPS41 Missense_Mutation p.S291L 0.24 tolerated(0.12) benign(0.002) TCGA-A3-3322-01 7 94257637 94257637 T A SGCE Silent p.T89T 0.49 TCGA-A3-3322-01 8 120569905 120569905 T C ENPP2 Silent p.V868V 0.34 TCGA-A3-3322-01 8 131896886 131896886 C T ADCY8 Missense_Mutation p.R678Q 0.43 tolerated(0.05) probably_damaging(0.913) TCGA-A3-3322-01 8 57219234 57219234 C T SDR16C5 Splice_Site p.X237_splice 0.22 TCGA-A3-3322-01 9 125681478 125681478 C A ZBTB26 Missense_Mutation p.G246C 0.34 deleterious(0.04) possibly_damaging(0.827) TCGA-A3-3322-01 X 153247610 153247610 G T TMEM187 Missense_Mutation p.V33L 0.56 tolerated(0.08) benign(0.374) TCGA-A3-3323-01 11 5968684 5968684 C T OR56A3 Silent p.S36S 0.04 TCGA-A3-3323-01 12 120196473 120196473 G A CIT Missense_Mutation p.S818F 0.22 deleterious(0.02) possibly_damaging(0.61) TCGA-A3-3323-01 12 124420000 124420000 G C DNAH10 Missense_Mutation p.G4463A 0.24 probably_damaging(0.998) TCGA-A3-3323-01 12 54798566 54798566 C G ITGA5 Silent p.L446L 0.08 TCGA-A3-3323-01 12 57920770 57920770 T G MBD6 Silent p.P614P 0.24 TCGA-A3-3323-01 12 58010243 58010243 G T ARHGEF25 Nonsense_Mutation p.E572* 0.25 TCGA-A3-3323-01 14 76117875 76117875 T G C14orf1 3'UTR 0.23 TCGA-A3-3323-01 14 93301996 93301996 A G GOLGA5 Missense_Mutation p.I680V 0.34 deleterious(0.01) possibly_damaging(0.462) TCGA-A3-3323-01 15 41222315 41222315 G T DLL4 Splice_Site p.X112_splice 0.31 TCGA-A3-3323-01 15 59407028 59407028 C T CCNB2 Nonsense_Mutation p.Q184* 0.25 TCGA-A3-3323-01 15 66795006 66795006 T A RPL4 Missense_Mutation p.Y122F 0.24 tolerated(0.29) benign(0.157) TCGA-A3-3323-01 15 74365099 74365099 C A GOLGA6A Silent p.V495V 0.10 TCGA-A3-3323-01 15 86312287 86312287 C T KLHL25 Missense_Mutation p.S252N 0.26 tolerated(0.49) benign(0.01) TCGA-A3-3323-01 16 21272606 21272606 G T CRYM Missense_Mutation p.H283Q 0.22 tolerated(0.31) benign(0) TCGA-A3-3323-01 16 25189485 25189485 C T LCMT1 3'UTR 0.33 TCGA-A3-3323-01 16 55846863 55846863 G A CES1 Silent p.P346P 0.04 TCGA-A3-3323-01 17 20931913 20931913 G A USP22 Silent p.F82F 0.34 TCGA-A3-3323-01 18 12367034 12367034 A T AFG3L2 Nonsense_Mutation p.L161* 0.27 TCGA-A3-3323-01 18 61255961 61255961 G - SERPINB13 Frame_Shift_Del p.T22Qfs*14 0.24 TCGA-A3-3323-01 19 11596575 11596575 T C ZNF653 Missense_Mutation p.N489S 0.24 deleterious(0.01) possibly_damaging(0.493) TCGA-A3-3323-01 19 36884285 36884292 AAAGGCCT - ZFP82 Frame_Shift_Del p.K317Ifs*7 0.30 TCGA-A3-3323-01 19 54942314 54942314 C G TTYH1 Missense_Mutation p.T357R 0.20 deleterious(0) probably_damaging(0.994) TCGA-A3-3323-01 1 114523687 114523687 G A OLFML3 Missense_Mutation p.D173N 0.17 tolerated(1) benign(0.003) TCGA-A3-3323-01 1 179562794 179562794 G A TDRD5 Silent p.A144A 0.03 TCGA-A3-3323-01 1 198687389 198687389 C A PTPRC Missense_Mutation p.F539L 0.25 deleterious(0) probably_damaging(0.986) TCGA-A3-3323-01 1 216051167 216051168 - T USH2A Frame_Shift_Ins p.D2872Rfs*17 0.22 TCGA-A3-3323-01 1 230991424 230991424 C T C1orf198 Nonsense_Mutation p.W125* 0.16 TCGA-A3-3323-01 1 78481792 78481792 G C DNAJB4 Missense_Mutation p.R292T 0.24 tolerated(0.18) benign(0.065) TCGA-A3-3323-01 1 89523725 89523725 C T GBP1 Missense_Mutation p.S275N 0.26 tolerated(0.24) benign(0.107) TCGA-A3-3323-01 20 62196111 62196111 T - HELZ2 Frame_Shift_Del p.D1355Vfs*86 0.36 TCGA-A3-3323-01 21 43967224 43967224 G A SLC37A1 Missense_Mutation p.V248I 0.05 tolerated(0.32) benign(0.006) TCGA-A3-3323-01 2 136633848 136633848 A T MCM6 Missense_Mutation p.F30I 0.13 deleterious(0) probably_damaging(1) TCGA-A3-3323-01 2 220493280 220493280 C T SLC4A3 Missense_Mutation p.R69W 0.37 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-A3-3323-01 2 96940604 96940604 A G SNRNP200 3'UTR 0.29 TCGA-A3-3323-01 3 119378938 119378938 G A POPDC2 Silent p.L111L 0.46 TCGA-A3-3323-01 3 196386769 196386775 CCTCAGC - NRROS Frame_Shift_Del p.L86Cfs*57 0.38 TCGA-A3-3323-01 3 38622777 38622777 T C SCN5A Missense_Mutation p.N958S 0.50 deleterious(0.02) probably_damaging(0.995) TCGA-A3-3323-01 3 52685756 52685756 A G PBRM1 Splice_Site p.X238_splice 0.31 TCGA-A3-3323-01 4 47538705 47538705 C G ATP10D Silent p.V382V 0.18 TCGA-A3-3323-01 4 74702427 74702427 T C CXCL6 5'UTR 0.22 TCGA-A3-3323-01 5 1032288 1032288 A C NKD2 Missense_Mutation p.K55Q 0.23 tolerated(0.08) possibly_damaging(0.73) TCGA-A3-3323-01 5 137902359 137902359 C A HSPA9 Nonsense_Mutation p.E310* 0.26 TCGA-A3-3323-01 5 141051674 141051674 C A ARAP3 Missense_Mutation p.C527F 0.24 deleterious(0) probably_damaging(1) TCGA-A3-3323-01 6 33036878 33036878 C T HLA-DPA1 Silent p.L182L 0.02 TCGA-A3-3323-01 6 33169301 33169307 CCATGGC - SLC39A7 Frame_Shift_Del p.H94Tfs*49 0.35 TCGA-A3-3323-01 6 33243970 33243970 G T RPS18 Silent p.L103L 0.05 TCGA-A3-3323-01 6 4116161 4116161 C T ECI2 Missense_Mutation p.D378N 0.05 deleterious(0.01) possibly_damaging(0.457) TCGA-A3-3323-01 7 100686874 100686874 T G MUC17 Silent p.S4059S 0.18 TCGA-A3-3323-01 7 103130250 103130250 G T RELN Silent p.L3234L 0.28 TCGA-A3-3323-01 7 116963052 116963052 C A WNT2 5'UTR 0.33 TCGA-A3-3323-01 7 127014261 127014261 G A ZNF800 Missense_Mutation p.H377Y 0.03 deleterious(0) probably_damaging(0.995) TCGA-A3-3323-01 7 129847772 129847772 T G SSMEM1 Missense_Mutation p.F8V 0.23 deleterious(0) possibly_damaging(0.504) TCGA-A3-3323-01 7 142609708 142609708 G - TRPV5 Frame_Shift_Del p.M577* 0.25 TCGA-A3-3323-01 7 43906364 43906364 A C MRPS24 Missense_Mutation p.F146L 0.31 tolerated(0.2) benign(0.057) TCGA-A3-3323-01 7 5330777 5330777 G A SLC29A4 Missense_Mutation p.M108I 0.20 tolerated(0.08) benign(0.196) TCGA-A3-3323-01 7 82996776 82996776 T G SEMA3E 3'UTR 0.22 TCGA-A3-3323-01 8 42015561 42015561 G A AP3M2 Missense_Mutation p.E126K 0.24 deleterious(0) probably_damaging(0.939) TCGA-A3-3323-01 9 131804663 131804663 C T FAM73B Silent p.A59A 0.30 TCGA-A3-3323-01 9 77417087 77417087 T A TRPM6 Missense_Mutation p.K579M 0.19 deleterious(0.03) benign(0.291) TCGA-A3-3323-01 9 80923397 80923397 G A PSAT1 Missense_Mutation p.R213H 0.25 deleterious(0.01) probably_damaging(0.968) TCGA-A3-3323-01 X 53240782 53240782 T - KDM5C Frame_Shift_Del p.E433Gfs*4 0.44 TCGA-A3-3326-01 10 47088041 47088041 T A NPY4R 3'UTR 0.09 TCGA-A3-3326-01 10 73472417 73472417 C T C10orf105 3'UTR 0.16 TCGA-A3-3326-01 11 122805156 122805156 A T C11orf63 Missense_Mutation p.E336V 0.07 deleterious(0) probably_damaging(0.988) TCGA-A3-3326-01 11 122930668 122930668 A G HSPA8 Silent p.T211T 0.31 TCGA-A3-3326-01 11 128839969 128839969 C T ARHGAP32 Silent p.K1699K 0.23 TCGA-A3-3326-01 11 15170770 15170770 G A INSC Missense_Mutation p.G64D 0.28 tolerated_low_confidence(0.27) benign(0.004) TCGA-A3-3326-01 11 32421532 32421532 A T WT1 Missense_Mutation p.Y354N 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A3-3326-01 11 58384897 58384897 C A ZFP91 Silent p.G477G 0.28 TCGA-A3-3326-01 11 59837676 59837676 G A MS4A3 Splice_Site p.X206_splice 0.19 TCGA-A3-3326-01 11 94592817 94592817 A - AMOTL1 Frame_Shift_Del p.Y691Sfs*12 0.15 TCGA-A3-3326-01 12 48358003 48358003 A T TMEM106C 5'UTR 0.35 TCGA-A3-3326-01 12 53708136 53708136 G C AAAS Missense_Mutation p.A212G 0.06 tolerated(0.24) benign(0.023) TCGA-A3-3326-01 14 70235652 70235652 T - SRSF5 Intron 0.29 TCGA-A3-3326-01 15 74336686 74336686 C G PML Missense_Mutation p.F662L 0.24 tolerated(0.37) probably_damaging(0.997) TCGA-A3-3326-01 16 21261382 21261382 C G ANKS4B Nonsense_Mutation p.Y165* 0.23 TCGA-A3-3326-01 16 27497454 27497454 C A GTF3C1 Missense_Mutation p.S1241I 0.25 tolerated(0.13) benign(0.01) TCGA-A3-3326-01 16 3533548 3533548 T C NAA60 Missense_Mutation p.F175L 0.14 deleterious(0.05) benign(0.014) TCGA-A3-3326-01 16 3533549 3533549 T A NAA60 Missense_Mutation p.F175Y 0.14 tolerated(0.44) benign(0.008) TCGA-A3-3326-01 16 69971102 69971102 G A WWP2 Silent p.P733P 0.07 TCGA-A3-3326-01 16 71570851 71570851 C T CHST4 Missense_Mutation p.H91Y 0.28 deleterious(0.01) possibly_damaging(0.878) TCGA-A3-3326-01 17 18219186 18219186 A G SMCR8 Missense_Mutation p.E28G 0.34 deleterious(0) probably_damaging(0.998) TCGA-A3-3326-01 17 20108270 20108270 A G SPECC1 Missense_Mutation p.N303S 0.08 tolerated(0.81) benign(0.004) TCGA-A3-3326-01 17 28575967 28575967 A G BLMH 3'UTR 0.33 TCGA-A3-3326-01 17 40836243 40836243 A G CNTNAP1 Missense_Mutation p.N120S 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-A3-3326-01 17 56285343 56285343 A G MKS1 Silent p.P395P 0.21 TCGA-A3-3326-01 17 65021007 65021007 C T CACNG4 Silent p.I112I 0.22 TCGA-A3-3326-01 18 48439249 48439249 A C ME2 Missense_Mutation p.L107F 0.22 tolerated(0.36) probably_damaging(1) TCGA-A3-3326-01 18 6966196 6966196 T A LAMA1 Missense_Mutation p.N2334Y 0.26 deleterious(0.01) possibly_damaging(0.722) TCGA-A3-3326-01 19 35827039 35827039 G T CD22 Silent p.P171P 0.27 TCGA-A3-3326-01 19 58018037 58018037 A T ZNF773 Nonsense_Mutation p.K192* 0.28 TCGA-A3-3326-01 1 152760113 152760115 ACT - LCE1E In_Frame_Del p.H113_S114delinsP 0.43 TCGA-A3-3326-01 1 154995893 154995893 G A DCST2 Silent p.T637T 0.32 TCGA-A3-3326-01 1 155721637 155721637 G C GON4L Missense_Mutation p.T2165S 0.32 deleterious(0) possibly_damaging(0.486) TCGA-A3-3326-01 1 157718409 157718409 C A FCRL2 Splice_Site p.X465_splice 0.07 TCGA-A3-3326-01 1 176659299 176659299 T C PAPPA2 Missense_Mutation p.Y722H 0.26 deleterious(0) probably_damaging(1) TCGA-A3-3326-01 1 19505691 19505691 T C UBR4 Silent p.G736G 0.26 TCGA-A3-3326-01 1 52552415 52552415 G A BTF3L4 Silent p.K154K 0.21 TCGA-A3-3326-01 20 47864087 47864093 AGGCCAG - ZNFX1 Frame_Shift_Del p.S1823Wfs*15 0.32 TCGA-A3-3326-01 20 56099123 56099123 A G CTCFL Silent p.L47L 0.27 TCGA-A3-3326-01 20 56138150 56138150 G - PCK1 Frame_Shift_Del p.R226Kfs*41 0.31 TCGA-A3-3326-01 21 30714928 30714928 G T BACH1 Missense_Mutation p.G662V 0.26 tolerated(0.07) possibly_damaging(0.655) TCGA-A3-3326-01 22 25597349 25597349 G T CRYBB3 5'UTR 0.23 TCGA-A3-3326-01 22 46372650 46372650 G A WNT7B 5'UTR 0.25 TCGA-A3-3326-01 2 160798242 160798242 G T PLA2R1 3'UTR 0.21 TCGA-A3-3326-01 2 179593688 179593688 A G TTN Silent p.S6359S 0.34 TCGA-A3-3326-01 2 189925460 189925464 TCACC - COL5A2 Frame_Shift_Del p.G693Sfs*16 0.26 TCGA-A3-3326-01 2 228176506 228176506 C T COL4A3 Missense_Mutation p.P1645S 0.18 unknown(0) TCGA-A3-3326-01 3 10191475 10191475 T A VHL Nonsense_Mutation p.Y156* 0.42 TCGA-A3-3326-01 3 108205348 108205348 G C MYH15 Silent p.P319P 0.24 TCGA-A3-3326-01 3 122160886 122160886 T C KPNA1 Missense_Mutation p.Q332R 0.26 deleterious(0) probably_damaging(0.916) TCGA-A3-3326-01 3 25824816 25824816 C T NGLY1 Silent p.Q22Q 0.58 TCGA-A3-3326-01 3 49690033 49690033 G A BSN Missense_Mutation p.R1015H 0.40 unknown(0) TCGA-A3-3326-01 3 52597379 52597379 C - PBRM1 Splice_Site p.X1310_splice 0.33 TCGA-A3-3326-01 3 53845230 53845230 A G CACNA1D Missense_Mutation p.T2115A 0.06 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-A3-3326-01 5 137708520 137708520 G T KDM3B Missense_Mutation p.W117L 0.21 deleterious(0) possibly_damaging(0.477) TCGA-A3-3326-01 5 150945790 150945790 T C FAT2 Silent p.K901K 0.12 TCGA-A3-3326-01 5 24491776 24491776 C T CDH10 Missense_Mutation p.M595I 0.27 tolerated(0.82) benign(0.38) TCGA-A3-3326-01 6 159029391 159029391 G A TMEM181 Missense_Mutation p.V371I 0.27 tolerated(0.22) benign(0.329) TCGA-A3-3326-01 6 24145877 24145877 T - NRSN1 Frame_Shift_Del p.F98Lfs*38 0.32 TCGA-A3-3326-01 6 35437244 35437247 CCCA - RPL10A Frame_Shift_Del p.H84Wfs*6 0.32 TCGA-A3-3326-01 6 42713803 42713803 G A TBCC Silent p.S3S 0.25 TCGA-A3-3326-01 6 74228802 74228802 A G EEF1A1 Silent p.T158T 0.20 TCGA-A3-3326-01 6 83963360 83963360 C T ME1 Missense_Mutation p.D268N 0.21 deleterious(0.02) probably_damaging(1) TCGA-A3-3326-01 7 142572835 142572835 A G TRPV6 Missense_Mutation p.V402A 0.24 tolerated(0.1) benign(0.003) TCGA-A3-3326-01 7 148801994 148801994 C G ZNF425 Silent p.L323L 0.26 TCGA-A3-3326-01 7 150554284 150554284 C A AOC1 Missense_Mutation p.F242L 0.32 tolerated(0.3) benign(0.001) TCGA-A3-3326-01 7 15405181 15405181 A - AGMO Frame_Shift_Del p.H408Tfs*2 0.31 TCGA-A3-3326-01 7 63726378 63726378 T A ZNF679 Missense_Mutation p.L123I 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-A3-3326-01 8 11412944 11412944 C G BLK Silent p.L241L 0.23 TCGA-A3-3326-01 8 139190851 139190851 G T FAM135B Missense_Mutation p.T319N 0.32 tolerated(0.17) probably_damaging(0.969) TCGA-A3-3326-01 8 33370151 33370151 A C TTI2 5'UTR 0.26 TCGA-A3-3326-01 9 71396052 71396052 T C FAM122A 3'UTR 0.31 TCGA-A3-3346-01 10 102006678 102006678 G A CWF19L1 Silent p.F241F 0.20 TCGA-A3-3346-01 10 3197825 3197825 C T PITRM1 Missense_Mutation p.E527K 0.23 tolerated(0.78) benign(0.002) TCGA-A3-3346-01 10 89692920 89692921 - A PTEN Frame_Shift_Ins p.C136Mfs*44 0.18 TCGA-A3-3346-01 11 119212284 119212284 C A MFRP Missense_Mutation p.D572Y 0.24 deleterious(0.01) possibly_damaging(0.634) TCGA-A3-3346-01 11 134118717 134118717 T C THYN1 Missense_Mutation p.Q206R 0.05 deleterious(0.05) probably_damaging(0.997) TCGA-A3-3346-01 11 18357301 18357301 G T GTF2H1 Missense_Mutation p.C52F 0.15 tolerated(0.06) possibly_damaging(0.853) TCGA-A3-3346-01 12 32863894 32863894 T - DNM1L Frame_Shift_Del p.S136Hfs*7 0.19 TCGA-A3-3346-01 12 51084867 51084867 T C DIP2B Silent p.V529V 0.23 TCGA-A3-3346-01 12 53684167 53684167 A T ESPL1 Missense_Mutation p.I1760F 0.21 tolerated(0.08) probably_damaging(1) TCGA-A3-3346-01 12 54422672 54422672 T C HOXC6 Missense_Mutation p.Y123H 0.12 deleterious(0.02) probably_damaging(0.914) TCGA-A3-3346-01 12 57033957 57033957 T C ATP5B Missense_Mutation p.D365G 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-A3-3346-01 12 81675169 81675169 C T PPFIA2 Missense_Mutation p.E1027K 0.16 deleterious(0.01) possibly_damaging(0.456) TCGA-A3-3346-01 13 37453538 37453538 G A SMAD9 Missense_Mutation p.R97C 0.23 deleterious(0.01) probably_damaging(1) TCGA-A3-3346-01 14 101429467 101429468 - A AL132709.8 Intron 0.14 TCGA-A3-3346-01 14 24651164 24651164 T G IPO4 Missense_Mutation p.Q935P 0.25 tolerated(0.2) possibly_damaging(0.699) TCGA-A3-3346-01 14 38678641 38678641 C A SSTR1 Missense_Mutation p.P16H 0.35 tolerated(0.41) unknown(0) TCGA-A3-3346-01 15 23333929 23333929 T A HERC2P2 RNA 0.21 TCGA-A3-3346-01 15 40068678 40068678 T A FSIP1 Silent p.S16S 0.19 TCGA-A3-3346-01 15 41793700 41793700 C T ITPKA Missense_Mutation p.P177S 0.06 tolerated(0.06) probably_damaging(1) TCGA-A3-3346-01 15 49292068 49292069 - T SECISBP2L Frame_Shift_Ins p.V789Sfs*2 0.18 TCGA-A3-3346-01 15 52646191 52646191 T G MYO5A Silent p.V1148V 0.18 TCGA-A3-3346-01 15 63000819 63000819 G C TLN2 Missense_Mutation p.S764T 0.24 tolerated(0.45) benign(0) TCGA-A3-3346-01 16 16284071 16284071 C T ABCC6 Missense_Mutation p.G529S 0.16 tolerated(0.15) benign(0.007) TCGA-A3-3346-01 16 68283347 68283347 C G PLA2G15 Missense_Mutation p.I94M 0.12 tolerated(0.55) benign(0.122) TCGA-A3-3346-01 16 89838183 89838183 C T FANCA Missense_Mutation p.R685K 0.17 tolerated(1) benign(0.067) TCGA-A3-3346-01 17 38506145 38506145 A G RARA Missense_Mutation p.Q146R 0.27 tolerated(0.06) possibly_damaging(0.785) TCGA-A3-3346-01 17 41585811 41585811 A G DHX8 Missense_Mutation p.I809V 0.21 tolerated(0.1) benign(0.252) TCGA-A3-3346-01 17 48452557 48452557 A C EME1 5'UTR 0.19 TCGA-A3-3346-01 17 48452559 48452559 A G EME1 5'UTR 0.19 TCGA-A3-3346-01 17 60004006 60004006 T G INTS2 Silent p.I8I 0.39 TCGA-A3-3346-01 17 7578396 7578397 - T TP53 Frame_Shift_Ins p.H178Qfs*3 0.15 TCGA-A3-3346-01 17 7736882 7736882 G - DNAH2 3'UTR 0.15 TCGA-A3-3346-01 17 7990740 7990740 C T ALOX12B Silent p.R7R 0.21 TCGA-A3-3346-01 18 61463591 61463591 A G SERPINB7 Missense_Mutation p.N143S 0.17 deleterious(0) probably_damaging(0.999) TCGA-A3-3346-01 19 20727828 20727828 T C ZNF737 Missense_Mutation p.E394G 0.11 deleterious(0.03) possibly_damaging(0.835) TCGA-A3-3346-01 19 34262927 34262927 C T CHST8 Silent p.D78D 0.07 TCGA-A3-3346-01 19 3522955 3522955 C A FZR1 5'Flank 0.20 TCGA-A3-3346-01 19 46289267 46289267 A G DMWD Missense_Mutation p.L496P 0.10 deleterious(0) possibly_damaging(0.902) TCGA-A3-3346-01 19 50657881 50657881 A C IZUMO2 Missense_Mutation p.F200C 0.16 deleterious(0) possibly_damaging(0.878) TCGA-A3-3346-01 19 54758770 54758770 G C LILRB5 Silent p.A361A 0.16 TCGA-A3-3346-01 19 56109181 56109181 G A FIZ1 Silent p.A17A 0.24 TCGA-A3-3346-01 19 9869150 9869150 T - ZNF846 Frame_Shift_Del p.D202Tfs*16 0.19 TCGA-A3-3346-01 1 111734915 111734915 A C DENND2D Silent p.A273A 0.09 TCGA-A3-3346-01 1 111734916 111734916 G T DENND2D Missense_Mutation p.A273D 0.10 deleterious(0) probably_damaging(1) TCGA-A3-3346-01 1 115137133 115137133 G A DENND2C Nonsense_Mutation p.R798* 0.04 TCGA-A3-3346-01 1 146672922 146672922 T A FMO5 Missense_Mutation p.Y332F 0.06 deleterious(0.01) probably_damaging(1) TCGA-A3-3346-01 1 153587436 153587436 C A S100A14 Missense_Mutation p.E80D 0.17 tolerated(0.09) possibly_damaging(0.664) TCGA-A3-3346-01 1 155753882 155753882 T G GON4L Splice_Site p.X597_splice 0.18 TCGA-A3-3346-01 1 180904820 180904820 A C KIAA1614 Missense_Mutation p.E592A 0.14 deleterious(0.02) benign(0.321) TCGA-A3-3346-01 1 220752837 220752837 A G MARK1 Missense_Mutation p.T65A 0.11 deleterious(0) probably_damaging(0.992) TCGA-A3-3346-01 1 22304925 22304925 T A CELA3B Missense_Mutation p.V36D 0.12 tolerated(0.27) benign(0.445) TCGA-A3-3346-01 1 27180396 27180396 C T ZDHHC18 3'UTR 0.22 TCGA-A3-3346-01 1 32796451 32796451 C T HDAC1 Silent p.N307N 0.17 TCGA-A3-3346-01 1 33237800 33237800 C T KIAA1522 Missense_Mutation p.S1007L 0.15 deleterious(0) probably_damaging(0.999) TCGA-A3-3346-01 1 35480663 35480663 T C ZMYM6 Missense_Mutation p.K177E 0.17 deleterious(0) probably_damaging(0.997) TCGA-A3-3346-01 1 52851529 52851529 T A ORC1 Silent p.R492R 0.12 TCGA-A3-3346-01 1 53245634 53245634 T A ZYG11B Missense_Mutation p.V354E 0.15 tolerated(0.69) benign(0.001) TCGA-A3-3346-01 1 54562078 54562078 G A TCEANC2 Missense_Mutation p.E187K 0.14 deleterious(0.01) possibly_damaging(0.7) TCGA-A3-3346-01 1 67450321 67450321 T G MIER1 Missense_Mutation p.I479S 0.19 tolerated(0.32) benign(0.002) TCGA-A3-3346-01 20 44693847 44693847 C A NCOA5 Missense_Mutation p.G217V 0.19 deleterious(0) probably_damaging(1) TCGA-A3-3346-01 20 49366718 49366719 AC - PARD6B Frame_Shift_Del p.N271Kfs*10 0.22 TCGA-A3-3346-01 20 62599261 62599261 A T ZNF512B Missense_Mutation p.S15T 0.13 deleterious_low_confidence(0.01) benign(0.263) TCGA-A3-3346-01 21 19666661 19666661 A G TMPRSS15 Silent p.Y804Y 0.15 TCGA-A3-3346-01 21 34143766 34143766 C T PAXBP1 Missense_Mutation p.G72R 0.17 tolerated_low_confidence(0.5) unknown(0) TCGA-A3-3346-01 21 34143767 34143767 G A PAXBP1 Silent p.L71L 0.21 TCGA-A3-3346-01 21 35893901 35893901 A T RCAN1 Missense_Mutation p.L161Q 0.14 deleterious(0.02) probably_damaging(1) TCGA-A3-3346-01 21 40550409 40550409 T - PSMG1 Frame_Shift_Del p.E207Dfs*5 0.14 TCGA-A3-3346-01 21 43411090 43411098 ATGTGATTG - ZBTB21 In_Frame_Del p.A1036_F1039delinsV 0.26 TCGA-A3-3346-01 22 37466612 37466612 G - TMPRSS6 Frame_Shift_Del p.L594Sfs*19 0.17 TCGA-A3-3346-01 22 38010280 38010280 G A GGA1 Missense_Mutation p.G43R 0.16 deleterious(0) probably_damaging(0.999) TCGA-A3-3346-01 22 38055358 38055358 C G PDXP Missense_Mutation p.T190S 0.16 deleterious(0) benign(0.012) TCGA-A3-3346-01 22 38201974 38201974 C A H1F0 Silent p.T141T 0.18 TCGA-A3-3346-01 2 11304356 11304356 C A PQLC3 Missense_Mutation p.A108D 0.24 deleterious(0.04) benign(0.032) TCGA-A3-3346-01 2 163250997 163250997 T - KCNH7 Splice_Site p.X872_splice 0.11 TCGA-A3-3346-01 2 182766972 182766972 G C SSFA2 Missense_Mutation p.E398Q 0.16 tolerated(0.27) benign(0.021) TCGA-A3-3346-01 2 184016285 184016285 A C NUP35 Silent p.T149T 0.15 TCGA-A3-3346-01 2 201354993 201354993 G C KCTD18 Missense_Mutation p.P371A 0.23 tolerated(0.65) benign(0.001) TCGA-A3-3346-01 2 220116808 220116808 T G TUBA4A Missense_Mutation p.T50P 0.13 deleterious_low_confidence(0) benign(0.094) TCGA-A3-3346-01 2 238244811 238244811 C T COL6A3 Missense_Mutation p.A2978T 0.17 unknown(0) TCGA-A3-3346-01 2 27684150 27684150 C - IFT172 Frame_Shift_Del p.E810Nfs*30 0.18 TCGA-A3-3346-01 2 63834039 63834039 T A MDH1 Missense_Mutation p.F326Y 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-A3-3346-01 2 70045736 70045736 G A ANXA4 Missense_Mutation p.D212N 0.22 tolerated(0.16) possibly_damaging(0.823) TCGA-A3-3346-01 2 9533614 9533614 C A ASAP2 Missense_Mutation p.P841H 0.11 tolerated(0.09) benign(0.379) TCGA-A3-3346-01 2 98418894 98418894 G A TMEM131 Missense_Mutation p.S883L 0.19 tolerated(0.13) benign(0.205) TCGA-A3-3346-01 3 121187276 121187276 G A POLQ Nonsense_Mutation p.R2241* 0.32 TCGA-A3-3346-01 3 33725901 33725901 C A CLASP2 Silent p.V198V 0.22 TCGA-A3-3346-01 3 52012054 52012054 G A ABHD14A-ACY1 Silent p.S79S 0.31 TCGA-A3-3346-01 3 52597506 52597506 T - PBRM1 Frame_Shift_Del p.K1268Nfs*20 0.20 TCGA-A3-3346-01 4 113539199 113539199 G T C4orf21 Missense_Mutation p.Q667K 0.08 tolerated(0.37) benign(0.081) TCGA-A3-3346-01 4 187549318 187549318 C T FAT1 Silent p.S1600S 0.11 TCGA-A3-3346-01 4 40428110 40428110 A G RBM47 Silent p.I531I 0.15 TCGA-A3-3346-01 4 74442420 74442420 A T RASSF6 Silent p.I282I 0.20 TCGA-A3-3346-01 5 134232036 134232036 G C TXNDC15 Missense_Mutation p.G270R 0.16 deleterious(0) probably_damaging(0.998) TCGA-A3-3346-01 5 134232037 134232037 G A TXNDC15 Missense_Mutation p.G270E 0.16 deleterious(0) probably_damaging(0.995) TCGA-A3-3346-01 5 140751901 140751901 G A PCDHGB3 Missense_Mutation p.R647H 0.10 deleterious(0.04) possibly_damaging(0.463) TCGA-A3-3346-01 5 154179286 154179286 T A LARP1 Missense_Mutation p.F428I 0.19 deleterious(0) probably_damaging(0.997) TCGA-A3-3346-01 5 176733119 176733119 C G PRELID1 Missense_Mutation p.F151L 0.13 deleterious(0) probably_damaging(0.969) TCGA-A3-3346-01 5 35871222 35871222 G T IL7R Silent p.V148V 0.14 TCGA-A3-3346-01 5 54603477 54603477 T A DHX29 5'UTR 0.12 TCGA-A3-3346-01 5 64859225 64859225 A T PPWD1 Nonsense_Mutation p.R30* 0.18 TCGA-A3-3346-01 5 79616637 79616637 C T SPZ1 Silent p.N201N 0.21 TCGA-A3-3346-01 6 107955403 107955403 A G SOBP Missense_Mutation p.H452R 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-A3-3346-01 6 143081369 143081369 G C HIVEP2 Missense_Mutation p.P2019R 0.23 deleterious(0) probably_damaging(0.995) TCGA-A3-3346-01 6 27805883 27805883 T G HIST1H2AK Missense_Mutation p.I79L 0.17 deleterious_low_confidence(0.01) benign(0.049) TCGA-A3-3346-01 6 31111166 31111166 C A CCHCR1 Missense_Mutation p.R731L 0.20 deleterious(0) possibly_damaging(0.561) TCGA-A3-3346-01 7 121023056 121023056 A C FAM3C 5'UTR 0.21 TCGA-A3-3346-01 7 144098145 144098145 G C NOBOX Missense_Mutation p.R280G 0.19 deleterious(0) probably_damaging(0.998) TCGA-A3-3346-01 7 156803064 156803064 G A MNX1 5'UTR 0.18 TCGA-A3-3346-01 7 18066427 18066427 G C PRPS1L1 3'UTR 0.24 TCGA-A3-3346-01 7 42958801 42958801 T C PSMA2 Intron 0.23 TCGA-A3-3346-01 7 99047957 99047957 G T CPSF4 Missense_Mutation p.K122N 0.12 deleterious(0.01) benign(0.271) TCGA-A3-3346-01 8 125072866 125072866 C T FER1L6 Silent p.C1021C 0.19 TCGA-A3-3346-01 8 133923643 133923657 GTTTCCATTCCTGTC - TG In_Frame_Del p.V1342_V1346del 0.22 TCGA-A3-3346-01 8 145666428 145666428 A T TONSL Missense_Mutation p.M311K 0.17 deleterious(0) benign(0.424) TCGA-A3-3346-01 8 18258243 18258243 T C NAT2 Missense_Mutation p.F244L 0.25 deleterious(0.01) probably_damaging(0.949) TCGA-A3-3346-01 8 56675226 56675227 - T TMEM68 Frame_Shift_Ins p.T98Nfs*14 0.21 TCGA-A3-3346-01 9 125424612 125424612 C T OR1L1 Silent p.V206V 0.22 TCGA-A3-3346-01 9 135942474 135942474 G A CEL Splice_Site p.X263_splice 0.04 TCGA-A3-3346-01 9 138413417 138413417 A G LCN1 Missense_Mutation p.D25G 0.09 tolerated(0.54) benign(0.004) TCGA-A3-3346-01 X 122758390 122758390 A G THOC2 Splice_Site p.X1062_splice 0.34 TCGA-A3-3346-01 X 132161721 132161721 C A USP26 Missense_Mutation p.Q176H 0.35 tolerated(0.18) benign(0.144) TCGA-A3-3347-01 10 101552068 101552068 A G ABCC2 Silent p.T95T 0.17 TCGA-A3-3347-01 10 98133425 98133425 T G TLL2 Missense_Mutation p.S864R 0.14 deleterious(0) possibly_damaging(0.776) TCGA-A3-3347-01 11 4411235 4411235 G A TRIM21 Silent p.Y135Y 0.27 TCGA-A3-3347-01 11 5322438 5322438 C G OR51B4 Missense_Mutation p.V247L 0.17 tolerated(0.67) benign(0.1) TCGA-A3-3347-01 11 58384670 58384675 TGTGAG - ZFP91 In_Frame_Del p.C402_E403del 0.14 TCGA-A3-3347-01 11 64111336 64111336 C A CCDC88B Silent p.R469R 0.23 TCGA-A3-3347-01 11 6652870 6652870 C G DCHS1 Missense_Mutation p.A1218P 0.10 tolerated(0.5) possibly_damaging(0.544) TCGA-A3-3347-01 11 74800063 74800063 G C OR2AT4 Silent p.R232R 0.08 TCGA-A3-3347-01 12 76425083 76425083 C T PHLDA1 Missense_Mutation p.G147S 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.679) TCGA-A3-3347-01 14 71462632 71462632 C G PCNX Missense_Mutation p.H873Q 0.08 tolerated(0.55) benign(0.005) TCGA-A3-3347-01 14 74196515 74196518 AGCT - ELMSAN1 Frame_Shift_Del p.A641Tfs*62 0.25 TCGA-A3-3347-01 16 16235190 16235190 C T ABCC1 3'UTR 0.12 TCGA-A3-3347-01 17 2570313 2570313 G A PAFAH1B1 Missense_Mutation p.E74K 0.19 tolerated(0.31) benign(0.206) TCGA-A3-3347-01 17 38182523 38182523 A C MED24 Missense_Mutation p.L624R 0.14 deleterious(0) probably_damaging(0.996) TCGA-A3-3347-01 17 40371847 40371847 C T STAT5B Silent p.P188P 0.23 TCGA-A3-3347-01 17 5383897 5383897 A - DERL2 Frame_Shift_Del p.F111Lfs*5 0.23 TCGA-A3-3347-01 17 74622132 74622132 C T ST6GALNAC1 Silent p.R487R 0.22 TCGA-A3-3347-01 19 42507514 42507514 C A GRIK5 Missense_Mutation p.W828C 0.17 deleterious(0) possibly_damaging(0.792) TCGA-A3-3347-01 19 58846167 58846167 C T ZSCAN22 5'UTR 0.12 TCGA-A3-3347-01 1 11177096 11177096 C T MTOR Missense_Mutation p.M2327I 0.18 deleterious(0) probably_damaging(0.954) TCGA-A3-3347-01 1 150482321 150482321 G C ECM1 Missense_Mutation p.E76D 0.19 tolerated_low_confidence(0.43) benign(0.003) TCGA-A3-3347-01 1 204236640 204236640 C A PLEKHA6 Missense_Mutation p.W81C 0.17 deleterious(0) probably_damaging(1) TCGA-A3-3347-01 1 22032266 22032266 C G USP48 Missense_Mutation p.G780R 0.10 tolerated(0.11) possibly_damaging(0.864) TCGA-A3-3347-01 1 86920891 86920891 C T CLCA2 Missense_Mutation p.T838M 0.06 tolerated(0.11) possibly_damaging(0.661) TCGA-A3-3347-01 1 89726279 89726279 T C GBP5 3'UTR 0.22 TCGA-A3-3347-01 22 37893039 37893039 A G CARD10 Missense_Mutation p.M645T 0.25 tolerated(0.59) benign(0) TCGA-A3-3347-01 22 38516843 38516843 G A PLA2G6 Silent p.Y555Y 0.12 TCGA-A3-3347-01 2 175450328 175450328 T C WIPF1 5'UTR 0.09 TCGA-A3-3347-01 2 225661855 225661855 T A DOCK10 Silent p.S1551S 0.06 TCGA-A3-3347-01 2 239181739 239181739 A T PER2 Missense_Mutation p.V181D 0.19 deleterious(0) benign(0.372) TCGA-A3-3347-01 2 46063 46063 T A FAM110C Missense_Mutation p.E108V 0.16 deleterious(0) possibly_damaging(0.892) TCGA-A3-3347-01 3 112993348 112993348 C G BOC Nonsense_Mutation p.S454* 0.18 TCGA-A3-3347-01 3 142509917 142509917 G C TRPC1 Missense_Mutation p.E452Q 0.04 tolerated(0.37) benign(0.243) TCGA-A3-3347-01 3 150264607 150264607 G C EIF2A Silent p.P6P 0.12 TCGA-A3-3347-01 3 184801259 184801259 T C C3orf70 Missense_Mutation p.I97V 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.658) TCGA-A3-3347-01 3 52651456 52651459 ATAA - PBRM1 Frame_Shift_Del p.F546Wfs*22 0.24 TCGA-A3-3347-01 3 52858939 52858939 G A ITIH4 Silent p.P265P 0.26 TCGA-A3-3347-01 4 122250674 122250674 T C QRFPR Missense_Mutation p.N364S 0.17 tolerated(0.29) benign(0.001) TCGA-A3-3347-01 5 108436130 108436130 A G FER Missense_Mutation p.K653R 0.18 deleterious(0.04) probably_damaging(0.988) TCGA-A3-3347-01 5 140712672 140712672 G C PCDHGA1 Missense_Mutation p.Q807H 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.77) TCGA-A3-3347-01 5 89949314 89949314 T C GPR98 Missense_Mutation p.F1308S 0.05 possibly_damaging(0.665) TCGA-A3-3347-01 6 146268777 146268777 A G SHPRH Missense_Mutation p.I355T 0.09 deleterious(0) possibly_damaging(0.811) TCGA-A3-3347-01 6 56506875 56506875 C T DST Missense_Mutation p.V96M 0.17 possibly_damaging(0.462) TCGA-A3-3347-01 8 113392679 113392679 G A CSMD3 Missense_Mutation p.T2013I 0.18 deleterious(0) possibly_damaging(0.886) TCGA-A3-3347-01 8 144810219 144810219 C T FAM83H Missense_Mutation p.G471D 0.33 deleterious(0) probably_damaging(1) TCGA-A3-3347-01 9 84531514 84531514 C A SPATA31D5P RNA 0.11 TCGA-A3-3347-01 X 51638670 51638670 G A MAGED1 Silent p.K245K 0.19 TCGA-A3-3347-01 X 56295819 56295819 G C KLF8 Missense_Mutation p.D219H 0.18 deleterious(0.04) possibly_damaging(0.692) TCGA-A3-3349-01 10 114164332 114164332 A T ACSL5 Missense_Mutation p.Q166L 0.15 deleterious(0) possibly_damaging(0.885) TCGA-A3-3349-01 11 4411299 4411299 C T TRIM21 Missense_Mutation p.C114Y 0.16 deleterious(0) probably_damaging(1) TCGA-A3-3349-01 11 61730491 61730491 T C BEST1 Missense_Mutation p.L562P 0.25 deleterious_low_confidence(0) benign(0) TCGA-A3-3349-01 11 66807536 66807536 G A SYT12 Silent p.E161E 0.26 TCGA-A3-3349-01 11 7022638 7022638 G T ZNF214 Silent p.S92S 0.10 TCGA-A3-3349-01 12 112193484 112193484 G A ACAD10 Missense_Mutation p.D1023N 0.19 deleterious(0.01) probably_damaging(0.981) TCGA-A3-3349-01 12 123746106 123746106 T A CDK2AP1 3'UTR 0.33 TCGA-A3-3349-01 12 95907730 95907730 A G METAP2 3'UTR 0.11 TCGA-A3-3349-01 13 39425206 39425206 C A FREM2 Missense_Mutation p.Q2235K 0.11 tolerated(0.26) benign(0.024) TCGA-A3-3349-01 14 54878218 54878235 TGGTATACAAGACATATT - CDKN3 In_Frame_Del p.G71_F76del 0.17 TCGA-A3-3349-01 14 77844367 77844367 A G SAMD15 Silent p.E202E 0.08 TCGA-A3-3349-01 16 19451955 19451955 G A TMC5 Missense_Mutation p.A199T 0.15 tolerated_low_confidence(0.51) benign(0) TCGA-A3-3349-01 16 72829790 72829790 T G ZFHX3 Missense_Mutation p.N2264T 0.22 probably_damaging(0.992) TCGA-A3-3349-01 16 76556130 76556130 C A CNTNAP4 Missense_Mutation p.Q838K 0.10 deleterious(0.04) benign(0.392) TCGA-A3-3349-01 17 55072362 55072362 C - SCPEP1 Frame_Shift_Del p.P214Lfs*25 0.19 TCGA-A3-3349-01 17 59155722 59155722 A G BCAS3 Missense_Mutation p.H735R 0.25 deleterious(0) probably_damaging(0.999) TCGA-A3-3349-01 17 76795062 76795062 A C USP36 Silent p.A1056A 0.22 TCGA-A3-3349-01 18 43668204 43668204 C A ATP5A1 Missense_Mutation p.D224Y 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-A3-3349-01 19 4433463 4433463 T C CHAF1A Missense_Mutation p.I867T 0.10 tolerated(0.26) benign(0.014) TCGA-A3-3349-01 19 55597327 55597327 C T EPS8L1 Missense_Mutation p.R502W 0.28 tolerated(0.08) benign(0.004) TCGA-A3-3349-01 19 7964495 7964495 T C LRRC8E Missense_Mutation p.F363S 0.28 deleterious(0) probably_damaging(0.986) TCGA-A3-3349-01 1 100368332 100368332 C G AGL Missense_Mutation p.R1228G 0.15 tolerated(0.23) benign(0.232) TCGA-A3-3349-01 1 168034953 168034953 A T DCAF6 Silent p.V855V 0.21 TCGA-A3-3349-01 1 47279221 47279221 C T CYP4B1 Missense_Mutation p.A188V 0.25 deleterious(0.01) benign(0.087) TCGA-A3-3349-01 1 85817252 85817252 A C DDAH1 Missense_Mutation p.F138L 0.24 deleterious(0) probably_damaging(1) TCGA-A3-3349-01 20 1616066 1616066 A T SIRPG Missense_Mutation p.W310R 0.21 tolerated(0.29) benign(0.053) TCGA-A3-3349-01 21 46011213 46011213 G A KRTAP10-6 3'UTR 0.08 TCGA-A3-3349-01 22 24034361 24034361 G T RGL4 Missense_Mutation p.Q48H 0.21 tolerated_low_confidence(0.14) possibly_damaging(0.652) TCGA-A3-3349-01 2 170068685 170068685 T C LRP2 Missense_Mutation p.N2025D 0.08 probably_damaging(0.977) TCGA-A3-3349-01 2 179641283 179641283 T C TTN Missense_Mutation p.R1770G 0.11 TCGA-A3-3349-01 2 219093573 219093573 G T ARPC2 Missense_Mutation p.E74D 0.25 tolerated(0.45) benign(0.005) TCGA-A3-3349-01 2 238280926 238280926 C T COL6A3 Missense_Mutation p.G1245E 0.11 possibly_damaging(0.698) TCGA-A3-3349-01 2 43801938 43801938 G C THADA Missense_Mutation p.H422Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-A3-3349-01 2 50723141 50723141 A C NRXN1 Missense_Mutation p.V1031G 0.24 deleterious(0) probably_damaging(0.999) TCGA-A3-3349-01 2 64808374 64808374 G - AFTPH Frame_Shift_Del p.D836Tfs*20 0.16 TCGA-A3-3349-01 3 10191540 10191540 T - VHL Frame_Shift_Del p.L178Rfs*24 0.29 TCGA-A3-3349-01 3 127390442 127390442 A - PODXL2 Frame_Shift_Del p.K531Sfs*41 0.23 TCGA-A3-3349-01 3 16237362 16237362 A G GALNT15 Missense_Mutation p.H212R 0.15 deleterious(0) possibly_damaging(0.828) TCGA-A3-3349-01 3 180325654 180325654 A G TTC14 Intron 0.16 TCGA-A3-3349-01 3 197652965 197652965 C A IQCG Missense_Mutation p.G219V 0.24 deleterious(0) probably_damaging(0.993) TCGA-A3-3349-01 3 98251887 98251887 T C GPR15 Missense_Mutation p.L337P 0.18 deleterious(0.01) probably_damaging(0.982) TCGA-A3-3349-01 4 48147535 48147535 A - TEC Frame_Shift_Del p.F381Lfs*4 0.18 TCGA-A3-3349-01 4 89183707 89183707 G A PPM1K 3'UTR 0.23 TCGA-A3-3349-01 5 174156377 174156377 A T MSX2 Nonsense_Mutation p.R199* 0.20 TCGA-A3-3349-01 5 33683970 33683970 C T ADAMTS12 Missense_Mutation p.M275I 0.23 deleterious(0.03) possibly_damaging(0.479) TCGA-A3-3349-01 5 42806776 42806776 C T SEPP1 Intron 0.30 TCGA-A3-3349-01 6 151894314 151894314 G A CCDC170 Silent p.L260L 0.33 TCGA-A3-3349-01 6 46721623 46721623 G A ANKRD66 Missense_Mutation p.G165R 0.22 deleterious(0.02) probably_damaging(1) TCGA-A3-3349-01 7 6042192 6042192 A G PMS2 Silent p.I143I 0.17 TCGA-A3-3349-01 8 27321118 27321118 C G CHRNA2 Missense_Mutation p.C281S 0.23 tolerated(0.14) probably_damaging(0.965) TCGA-A3-3349-01 8 75927084 75927084 C T CRISPLD1 Missense_Mutation p.R222W 0.26 deleterious(0) benign(0.339) TCGA-A3-3349-01 9 116267783 116267783 G C RGS3 Missense_Mutation p.R320P 0.25 deleterious(0) probably_damaging(1) TCGA-A3-3349-01 X 94318171 94318171 C T MIR548M RNA 0.18 TCGA-A3-3357-01 10 21076186 21076186 T C NEBL Missense_Mutation p.Y938C 0.24 deleterious(0) benign(0.017) TCGA-A3-3357-01 10 50678573 50678573 C T ERCC6 Missense_Mutation p.E1145K 0.33 tolerated(0.57) benign(0.003) TCGA-A3-3357-01 10 64954117 64954117 C G JMJD1C Missense_Mutation p.W1888S 0.28 deleterious(0) probably_damaging(0.939) TCGA-A3-3357-01 10 73406544 73406544 G T CDH23 3'UTR 0.11 TCGA-A3-3357-01 10 91492692 91492692 C T KIF20B Silent p.N768N 0.03 TCGA-A3-3357-01 10 94405242 94405242 C T KIF11 Missense_Mutation p.S797F 0.05 deleterious(0) benign(0.418) TCGA-A3-3357-01 11 114568953 114568953 A T NXPE2 Missense_Mutation p.T107S 0.34 tolerated(0.07) probably_damaging(0.913) TCGA-A3-3357-01 11 32657351 32657351 T C CCDC73 Missense_Mutation p.N359S 0.30 tolerated(0.07) benign(0.047) TCGA-A3-3357-01 11 55595213 55595213 G C OR5L2 Silent p.V173V 0.03 TCGA-A3-3357-01 11 66136951 66136951 C G SLC29A2 Missense_Mutation p.S55T 0.26 tolerated(0.45) benign(0.013) TCGA-A3-3357-01 11 6806547 6806547 C T OR2AG1 Silent p.S93S 0.22 TCGA-A3-3357-01 11 71711432 71711432 C T IL18BP Missense_Mutation p.H22Y 0.23 tolerated(0.06) benign(0.009) TCGA-A3-3357-01 12 109660697 109660697 T C ACACB Missense_Mutation p.F1258L 0.28 tolerated(0.33) benign(0.363) TCGA-A3-3357-01 12 109935725 109935725 T C UBE3B Silent p.P272P 0.31 TCGA-A3-3357-01 12 33579108 33579108 C T SYT10 Silent p.V158V 0.27 TCGA-A3-3357-01 12 46754841 46754841 G T SLC38A2 3'UTR 0.23 TCGA-A3-3357-01 12 8212018 8212018 T A C3AR1 Missense_Mutation p.Y255F 0.33 tolerated(0.31) benign(0.002) TCGA-A3-3357-01 12 89885862 89885862 A G POC1B Silent p.H101H 0.28 TCGA-A3-3357-01 13 95092274 95092274 G C DCT Missense_Mutation p.L513V 0.23 tolerated(0.14) benign(0.053) TCGA-A3-3357-01 14 106621957 106621958 GT - IGHV3-16 Frame_Shift_Del p.N96Ifs*? 0.38 TCGA-A3-3357-01 14 19563321 19563321 A G POTEG Intron 0.25 TCGA-A3-3357-01 14 20779855 20779855 C T CCNB1IP1 Missense_Mutation p.D230N 0.30 deleterious_low_confidence(0.01) benign(0.429) TCGA-A3-3357-01 14 22337492 22337492 C T TRAV13-1 Missense_Mutation p.H95Y 0.03 deleterious(0.05) benign(0.187) TCGA-A3-3357-01 14 71479737 71479737 G A PCNX Silent p.L938L 0.33 TCGA-A3-3357-01 14 73570036 73570036 G C RBM25 Missense_Mutation p.R335P 0.17 unknown(0) TCGA-A3-3357-01 14 86088731 86088731 G T FLRT2 Silent p.L291L 0.47 TCGA-A3-3357-01 14 93118453 93118453 C A RIN3 Silent p.P353P 0.40 TCGA-A3-3357-01 15 50336887 50336887 T A ATP8B4 Silent p.L68L 0.28 TCGA-A3-3357-01 15 63950916 63950916 A T HERC1 Silent p.G3142G 0.27 TCGA-A3-3357-01 15 78765670 78765670 G T IREB2 Missense_Mutation p.G324W 0.30 deleterious(0) probably_damaging(0.999) TCGA-A3-3357-01 16 15854414 15854414 C A MYH11 Missense_Mutation p.A418S 0.27 probably_damaging(0.996) TCGA-A3-3357-01 16 46743538 46743538 A T MYLK3 Missense_Mutation p.N771K 0.31 deleterious(0.03) benign(0.391) TCGA-A3-3357-01 16 53692370 53692370 C G RPGRIP1L Missense_Mutation p.D453H 0.26 deleterious(0) possibly_damaging(0.779) TCGA-A3-3357-01 17 15961009 15961009 G T NCOR1 Missense_Mutation p.Q2071K 0.32 benign(0.022) TCGA-A3-3357-01 17 33689790 33689790 T G SLFN11 Missense_Mutation p.K346T 0.29 deleterious(0) benign(0.25) TCGA-A3-3357-01 17 37265509 37265509 G A PLXDC1 Nonsense_Mutation p.Q131* 0.28 TCGA-A3-3357-01 17 40764111 40764111 G A TUBG1 Missense_Mutation p.D117N 0.26 deleterious(0.05) benign(0.004) TCGA-A3-3357-01 17 43923235 43923235 G A SPPL2C Silent p.P321P 0.22 TCGA-A3-3357-01 17 68128242 68128242 G A KCNJ16 Missense_Mutation p.G5D 0.04 tolerated_low_confidence(0.08) benign(0.015) TCGA-A3-3357-01 17 8141397 8141397 G A CTC1 Missense_Mutation p.P200L 0.27 deleterious(0) probably_damaging(1) TCGA-A3-3357-01 19 39880356 39880356 A G PAF1 Silent p.H72H 0.36 TCGA-A3-3357-01 19 44589959 44589959 G A ZNF284 Missense_Mutation p.E110K 0.33 tolerated(0.13) benign(0.028) TCGA-A3-3357-01 19 49129392 49129392 C T SPHK2 Missense_Mutation p.A95V 0.34 tolerated(0.1) benign(0.028) TCGA-A3-3357-01 19 51140596 51140596 G T SYT3 Silent p.R25R 0.37 TCGA-A3-3357-01 19 52869689 52869689 T A ZNF610 Missense_Mutation p.F353Y 0.26 deleterious(0.03) probably_damaging(0.978) TCGA-A3-3357-01 1 145765030 145765030 T C GPR89A Missense_Mutation p.M453V 0.33 tolerated(0.41) benign(0) TCGA-A3-3357-01 1 151021076 151021076 A G C1orf56 Silent p.Q251Q 0.28 TCGA-A3-3357-01 1 157650775 157650775 G A FCRL3 Silent p.S651S 0.29 TCGA-A3-3357-01 1 169677787 169677787 A T SELL Silent p.P94P 0.34 TCGA-A3-3357-01 1 175299227 175299227 C A TNR Missense_Mutation p.S1259I 0.34 deleterious(0.03) benign(0.021) TCGA-A3-3357-01 1 186064396 186064396 C G HMCN1 Nonsense_Mutation p.S3439* 0.12 TCGA-A3-3357-01 1 192628688 192628688 T C RGS13 3'UTR 0.21 TCGA-A3-3357-01 1 222743918 222743918 T C TAF1A Missense_Mutation p.I232V 0.30 tolerated(0.35) benign(0.234) TCGA-A3-3357-01 1 231906802 231906802 G A DISC1 Silent p.P540P 0.29 TCGA-A3-3357-01 1 236925938 236925938 A T ACTN2 3'UTR 0.31 TCGA-A3-3357-01 1 247463962 247463962 G C ZNF496 Silent p.R541R 0.26 TCGA-A3-3357-01 1 33487201 33487201 G T AK2 Missense_Mutation p.A108E 0.33 deleterious(0) probably_damaging(0.961) TCGA-A3-3357-01 1 54262374 54262374 A C NDC1 Missense_Mutation p.N524K 0.23 deleterious(0.04) possibly_damaging(0.72) TCGA-A3-3357-01 1 89889894 89889894 A C GBP1P1 RNA 0.25 TCGA-A3-3357-01 20 16316573 16316573 C T KIF16B Missense_Mutation p.E422K 0.29 tolerated(0.07) probably_damaging(0.999) TCGA-A3-3357-01 20 16316574 16316574 T G KIF16B Silent p.A421A 0.29 TCGA-A3-3357-01 20 2795845 2795845 C T C20orf141 Silent p.C5C 0.32 TCGA-A3-3357-01 20 33433135 33433135 A C GGT7 Missense_Mutation p.L662R 0.38 deleterious_low_confidence(0) possibly_damaging(0.69) TCGA-A3-3357-01 20 33872357 33872357 C A EIF6 Intron 0.20 TCGA-A3-3357-01 21 40636400 40636400 C G BRWD1 Missense_Mutation p.G624A 0.25 tolerated(0.13) probably_damaging(0.991) TCGA-A3-3357-01 22 21068764 21068765 - A PI4KA Frame_Shift_Ins p.S1815* 0.20 TCGA-A3-3357-01 22 31524540 31524540 G A INPP5J Missense_Mutation p.R330Q 0.06 tolerated(0.38) benign(0.008) TCGA-A3-3357-01 22 35719146 35719146 T C TOM1 Silent p.H114H 0.24 TCGA-A3-3357-01 22 40662297 40662297 A C TNRC6B Missense_Mutation p.E688A 0.33 tolerated(0.48) probably_damaging(0.993) TCGA-A3-3357-01 2 109104197 109104197 G - GCC2 Frame_Shift_Del p.V1325Sfs*7 0.31 TCGA-A3-3357-01 2 113785368 113785368 G T IL36B Intron 0.64 TCGA-A3-3357-01 2 145157573 145157573 G A ZEB2 Missense_Mutation p.P394L 0.06 deleterious(0) benign(0.24) TCGA-A3-3357-01 2 163144684 163144684 T G IFIH1 Missense_Mutation p.K352N 0.29 tolerated(0.15) benign(0.015) TCGA-A3-3357-01 2 168104032 168104032 A G XIRP2 Missense_Mutation p.R2044G 0.24 probably_damaging(0.933) TCGA-A3-3357-01 2 179466064 179466064 G A TTN Nonsense_Mutation p.R18554* 0.22 TCGA-A3-3357-01 2 179571302 179571302 C A TTN Missense_Mutation p.G9767W 0.27 TCGA-A3-3357-01 2 192546733 192546733 A C NABP1 Missense_Mutation p.K98Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-A3-3357-01 2 227919340 227919340 G T COL4A4 Missense_Mutation p.P944T 0.32 unknown(0) TCGA-A3-3357-01 2 233708765 233708768 CAGC T GIGYF2 Nonsense_Mutation p.Q988_Q989delins* 0.39 TCGA-A3-3357-01 3 101311704 101311704 T C PCNP 3'UTR 0.29 TCGA-A3-3357-01 3 119099820 119099820 C G ARHGAP31 Missense_Mutation p.P140A 0.37 tolerated(0.15) benign(0.028) TCGA-A3-3357-01 3 128986841 128986841 G C COPG1 Missense_Mutation p.E536Q 0.21 tolerated(0.95) benign(0.006) TCGA-A3-3357-01 3 130162331 130162331 C G COL6A5 Missense_Mutation p.Q2167E 0.24 tolerated(0.17) benign(0.009) TCGA-A3-3357-01 3 16535237 16535237 C A RFTN1 Missense_Mutation p.S47I 0.45 deleterious(0.02) benign(0.431) TCGA-A3-3357-01 3 176768295 176768295 C A TBL1XR1 Missense_Mutation p.W177C 0.41 deleterious(0) probably_damaging(0.999) TCGA-A3-3357-01 3 178952090 178952090 G C PIK3CA Missense_Mutation p.G1049R 0.29 tolerated(0.09) possibly_damaging(0.487) TCGA-A3-3357-01 3 186505363 186505363 C T EIF4A2 Missense_Mutation p.T330I 0.30 deleterious(0) probably_damaging(1) TCGA-A3-3357-01 3 193366636 193366636 T C OPA1 Missense_Mutation p.L645P 0.32 deleterious(0) possibly_damaging(0.637) TCGA-A3-3357-01 4 2515531 2515531 C A RNF4 Missense_Mutation p.H186Q 0.22 deleterious(0) possibly_damaging(0.742) TCGA-A3-3357-01 4 39324978 39324978 T C RFC1 Silent p.E234E 0.27 TCGA-A3-3357-01 4 54256754 54256755 - AG FIP1L1 Frame_Shift_Ins p.D156Efs*50 0.32 TCGA-A3-3357-01 4 56890684 56890684 A C CEP135 Missense_Mutation p.E1113A 0.28 deleterious(0) probably_damaging(0.999) TCGA-A3-3357-01 4 84374451 84374451 A C HELQ Silent p.P315P 0.27 TCGA-A3-3357-01 5 140502925 140502925 G A PCDHB4 Missense_Mutation p.A449T 0.04 tolerated(0.33) benign(0.01) TCGA-A3-3357-01 5 141025713 141025713 C A FCHSD1 Nonsense_Mutation p.E364* 0.29 TCGA-A3-3357-01 5 141243421 141243421 G A PCDH1 Silent p.L825L 0.25 TCGA-A3-3357-01 5 146792202 146792202 A G DPYSL3 Missense_Mutation p.V311A 0.40 deleterious(0) probably_damaging(0.942) TCGA-A3-3357-01 5 148406556 148406556 C G SH3TC2 Missense_Mutation p.K913N 0.21 tolerated(0.44) benign(0.039) TCGA-A3-3357-01 5 171299957 171299957 A G FBXW11 Missense_Mutation p.L399P 0.22 deleterious(0) probably_damaging(1) TCGA-A3-3357-01 5 33751536 33751536 T - ADAMTS12 Frame_Shift_Del p.T203Pfs*8 0.35 TCGA-A3-3357-01 5 38949983 38949983 T G RICTOR Missense_Mutation p.S1323R 0.05 deleterious(0) probably_damaging(0.998) TCGA-A3-3357-01 5 74325838 74325838 T G GCNT4 Missense_Mutation p.K9Q 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.535) TCGA-A3-3357-01 6 116987929 116987929 T G ZUFSP Missense_Mutation p.K143Q 0.28 tolerated(0.37) possibly_damaging(0.699) TCGA-A3-3357-01 6 24547467 24547467 C G KIAA0319 Missense_Mutation p.G1049R 0.26 deleterious(0.01) benign(0.111) TCGA-A3-3357-01 6 32816567 32816567 C A TAP1 Missense_Mutation p.E536D 0.06 deleterious(0.05) benign(0.167) TCGA-A3-3357-01 6 71004163 71004163 C T COL9A1 Missense_Mutation p.D135N 0.17 unknown(0) TCGA-A3-3357-01 7 123329154 123329154 T C WASL Silent p.G466G 0.31 TCGA-A3-3357-01 7 21469100 21469100 C T SP4 Missense_Mutation p.A106V 0.35 deleterious(0.01) benign(0.046) TCGA-A3-3357-01 7 27868314 27868314 T A TAX1BP1 Missense_Mutation p.F746I 0.28 deleterious(0) probably_damaging(0.995) TCGA-A3-3357-01 7 4794095 4794095 C T FOXK1 Missense_Mutation p.P251L 0.29 deleterious(0.02) benign(0.015) TCGA-A3-3357-01 7 73790732 73790732 G T CLIP2 Missense_Mutation p.L667F 0.15 deleterious(0.03) benign(0.216) TCGA-A3-3357-01 7 91842561 91842561 A T KRIT1 Missense_Mutation p.V658E 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-A3-3357-01 7 95157124 95157124 G T ASB4 Splice_Site p.X163_splice 0.06 TCGA-A3-3357-01 8 21826991 21826991 C T XPO7 Intron 0.28 TCGA-A3-3357-01 8 38189086 38189086 C A WHSC1L1 Missense_Mutation p.V310F 0.26 deleterious(0) probably_damaging(1) TCGA-A3-3357-01 8 97621610 97621610 C T SDC2 Intron 0.30 TCGA-A3-3357-01 9 131256864 131256864 C T ODF2 Silent p.L610L 0.29 TCGA-A3-3357-01 9 140138088 140138088 T C FAM166A 3'UTR 0.31 TCGA-A3-3357-01 9 85950490 85950490 G T FRMD3 Missense_Mutation p.F179L 0.36 tolerated(0.33) benign(0.047) TCGA-A3-3357-01 9 90255297 90255297 T C DAPK1 Silent p.D238D 0.33 TCGA-A3-3358-01 10 127520153 127520153 T G BCCIP Silent p.A192A 0.19 TCGA-A3-3358-01 10 75545700 75545700 T G ZSWIM8 Missense_Mutation p.F22V 0.24 deleterious(0) probably_damaging(0.974) TCGA-A3-3358-01 11 114167217 114167217 T A NNMT 5'UTR 0.22 TCGA-A3-3358-01 11 12278355 12278355 C T MICAL2 Silent p.P993P 0.25 TCGA-A3-3358-01 11 48149550 48149550 C T PTPRJ Silent p.L438L 0.09 TCGA-A3-3358-01 11 73555925 73555925 A G MRPL48 Missense_Mutation p.N92S 0.24 deleterious(0) possibly_damaging(0.895) TCGA-A3-3358-01 12 100042248 100042248 G C FAM71C Missense_Mutation p.R99T 0.23 tolerated(0.37) benign(0.009) TCGA-A3-3358-01 12 106466600 106466600 T C NUAK1 Missense_Mutation p.N201D 0.26 deleterious(0) probably_damaging(0.998) TCGA-A3-3358-01 12 10865871 10865871 G A YBX3 Missense_Mutation p.A171V 0.44 deleterious(0) probably_damaging(0.978) TCGA-A3-3358-01 12 51758021 51758021 G C GALNT6 Silent p.P311P 0.31 TCGA-A3-3358-01 12 7188482 7188482 A G C1R Missense_Mutation p.L439P 0.08 deleterious(0) probably_damaging(0.99) TCGA-A3-3358-01 13 76427480 76427480 C - LMO7 Frame_Shift_Del p.H1307Ifs*19 0.18 TCGA-A3-3358-01 14 31074726 31074726 T G G2E3 Missense_Mutation p.F342L 0.19 tolerated(0.64) benign(0) TCGA-A3-3358-01 14 75248651 75248651 C T YLPM1 Silent p.P635P 0.24 TCGA-A3-3358-01 15 48060820 48060820 T C SEMA6D Missense_Mutation p.I603T 0.05 tolerated(0.59) benign(0) TCGA-A3-3358-01 15 51692438 51692438 T A GLDN Missense_Mutation p.D289E 0.26 tolerated(0.63) benign(0.005) TCGA-A3-3358-01 15 83221251 83221251 G C CPEB1 Missense_Mutation p.S393R 0.22 deleterious(0.01) probably_damaging(1) TCGA-A3-3358-01 16 30036624 30036624 G A FAM57B Silent p.N235N 0.56 TCGA-A3-3358-01 16 31131747 31131747 A G KAT8 Missense_Mutation p.K125R 0.08 tolerated(0.29) benign(0.008) TCGA-A3-3358-01 16 67983803 67983803 C G SLC12A4 Missense_Mutation p.V552L 0.25 tolerated(0.12) benign(0.026) TCGA-A3-3358-01 16 67983804 67983804 C A SLC12A4 Missense_Mutation p.K551N 0.24 tolerated(0.05) probably_damaging(0.974) TCGA-A3-3358-01 17 11583161 11583161 G T DNAH9 Missense_Mutation p.E1147D 0.20 benign(0.008) TCGA-A3-3358-01 17 18141525 18141526 - A LLGL1 Frame_Shift_Ins p.L685Vfs*10 0.44 TCGA-A3-3358-01 17 27958639 27958642 CTGA - SSH2 Frame_Shift_Del p.S1163Rfs*18 0.20 TCGA-A3-3358-01 17 33495265 33495265 T G UNC45B Missense_Mutation p.I446S 0.24 deleterious(0) probably_damaging(0.978) TCGA-A3-3358-01 17 34308475 34308475 C T CCL16 5'UTR 0.14 TCGA-A3-3358-01 17 36892363 36892363 A T PCGF2 Missense_Mutation p.Y213N 0.25 deleterious(0) probably_damaging(0.913) TCGA-A3-3358-01 17 38711628 38711628 C T CCR7 Missense_Mutation p.R168H 0.07 deleterious(0) probably_damaging(1) TCGA-A3-3358-01 17 62512882 62512882 C A CEP95 Missense_Mutation p.R137S 0.13 tolerated(0.94) benign(0.022) TCGA-A3-3358-01 18 42530495 42530495 C T SETBP1 Missense_Mutation p.S397L 0.23 deleterious(0.05) benign(0.016) TCGA-A3-3358-01 19 1106418 1106418 G C GPX4 Missense_Mutation p.G174A 0.24 deleterious(0) possibly_damaging(0.81) TCGA-A3-3358-01 19 1106419 1106419 C T GPX4 Silent p.G174G 0.21 TCGA-A3-3358-01 19 17756598 17756598 G A UNC13A Silent p.D747D 0.20 TCGA-A3-3358-01 19 21720845 21720845 A T ZNF429 Missense_Mutation p.I664F 0.24 deleterious_low_confidence(0.03) benign(0.02) TCGA-A3-3358-01 19 3533343 3533343 T C FZR1 Missense_Mutation p.S432P 0.10 deleterious(0) possibly_damaging(0.862) TCGA-A3-3358-01 19 41286335 41286335 G A RAB4B Missense_Mutation p.R48Q 0.24 deleterious(0) benign(0.204) TCGA-A3-3358-01 19 41286350 41286350 G T RAB4B Missense_Mutation p.G53V 0.22 deleterious(0.05) benign(0.037) TCGA-A3-3358-01 19 43680096 43680096 G C PSG5 Missense_Mutation p.T212R 0.15 deleterious(0.01) probably_damaging(0.926) TCGA-A3-3358-01 19 4950899 4950899 A G UHRF1 RNA 0.26 TCGA-A3-3358-01 19 58863915 58863915 A T A1BG Nonsense_Mutation p.L116* 0.27 TCGA-A3-3358-01 1 151206687 151206687 C - PIP5K1A Frame_Shift_Del p.P219Lfs*25 0.18 TCGA-A3-3358-01 1 158609713 158609713 G A SPTA1 Missense_Mutation p.R1608C 0.23 deleterious(0) probably_damaging(1) TCGA-A3-3358-01 1 16255505 16255505 C T SPEN Missense_Mutation p.P924S 0.19 benign(0.146) TCGA-A3-3358-01 1 167960476 167960476 C A DCAF6 Missense_Mutation p.S196Y 0.05 deleterious(0) probably_damaging(0.992) TCGA-A3-3358-01 1 170914714 170914714 C T MROH9 Missense_Mutation p.P6L 0.21 deleterious_low_confidence(0.03) benign(0.117) TCGA-A3-3358-01 1 185985179 185985179 G T HMCN1 Nonsense_Mutation p.G1667* 0.21 TCGA-A3-3358-01 1 200943295 200943295 G A KIF21B Silent p.Y1614Y 0.22 TCGA-A3-3358-01 1 212619210 212619210 G A NENF Silent p.E127E 0.27 TCGA-A3-3358-01 1 244868992 244868992 A G DESI2 Silent p.E162E 0.22 TCGA-A3-3358-01 1 247875599 247875599 G T OR6F1 Missense_Mutation p.F153L 0.29 deleterious(0.03) possibly_damaging(0.84) TCGA-A3-3358-01 1 91978791 91978791 C T CDC7 Missense_Mutation p.S250F 0.26 tolerated(0.15) benign(0.008) TCGA-A3-3358-01 20 31572986 31572986 C T SUN5 Missense_Mutation p.M301I 0.32 tolerated(0.26) benign(0.047) TCGA-A3-3358-01 20 62596015 62596015 C T ZNF512B Silent p.E363E 0.11 TCGA-A3-3358-01 21 38098521 38098521 G C SIM2 Missense_Mutation p.Q215H 0.17 tolerated(1) benign(0.008) TCGA-A3-3358-01 21 44427621 44427621 A G PKNOX1 Silent p.L24L 0.19 TCGA-A3-3358-01 21 45106789 45106789 G A RRP1B Missense_Mutation p.E372K 0.04 tolerated(0.06) benign(0.063) TCGA-A3-3358-01 2 108507242 108507242 C A RGPD4 3'UTR 0.23 TCGA-A3-3358-01 2 128036918 128036918 C A ERCC3 Nonsense_Mutation p.E521* 0.24 TCGA-A3-3358-01 2 157426664 157426664 G A GPD2 Silent p.V514V 0.07 TCGA-A3-3358-01 2 179447134 179447134 C A TTN Missense_Mutation p.V22017L 0.04 TCGA-A3-3358-01 2 210889861 210889861 C T KANSL1L Nonsense_Mutation p.W844* 0.24 TCGA-A3-3358-01 2 216274775 216274775 G C FN1 Missense_Mutation p.I668M 0.26 deleterious(0) probably_damaging(0.999) TCGA-A3-3358-01 2 216960587 216960587 G A TMEM169 5'UTR 0.39 TCGA-A3-3358-01 2 218669158 218669158 C A TNS1 3'UTR 0.20 TCGA-A3-3358-01 2 242076659 242076659 A G PASK Silent p.S299S 0.22 TCGA-A3-3358-01 2 32517399 32517399 A G YIPF4 Silent p.S129S 0.24 TCGA-A3-3358-01 2 85828190 85828190 C T TMEM150A Missense_Mutation p.G52R 0.31 tolerated(0.35) probably_damaging(0.986) TCGA-A3-3358-01 3 47079269 47079269 T A SETD2 Splice_Site p.X2413_splice 0.28 TCGA-A3-3358-01 4 169085402 169085402 T C ANXA10 Silent p.N121N 0.15 TCGA-A3-3358-01 4 533277 533277 G A PIGG 3'UTR 0.20 TCGA-A3-3358-01 4 6055538 6055538 A T JAKMIP1 Intron 0.33 TCGA-A3-3358-01 4 79420893 79420893 A C FRAS1 Missense_Mutation p.E3045A 0.25 probably_damaging(0.999) TCGA-A3-3358-01 5 122923847 122923847 G T CSNK1G3 Missense_Mutation p.K253N 0.17 deleterious(0) probably_damaging(0.994) TCGA-A3-3358-01 5 134303651 134303651 A G CATSPER3 5'UTR 0.17 TCGA-A3-3358-01 5 140517263 140517263 C A PCDHB5 Missense_Mutation p.H749Q 0.14 tolerated_low_confidence(1) benign(0) TCGA-A3-3358-01 5 161569238 161569238 T A GABRG2 Missense_Mutation p.Y320N 0.06 deleterious(0) probably_damaging(0.999) TCGA-A3-3358-01 6 145948647 145948647 G T EPM2A Missense_Mutation p.P301T 0.19 deleterious(0) probably_damaging(0.963) TCGA-A3-3358-01 6 87725923 87725923 C T HTR1E Missense_Mutation p.R291C 0.27 deleterious(0) probably_damaging(0.978) TCGA-A3-3358-01 7 136701169 136701169 C G CHRM2 3'UTR 0.25 TCGA-A3-3358-01 7 136848967 136848967 C T hsa-mir-490 Intron 0.22 TCGA-A3-3358-01 7 13935479 13935479 C G ETV1 3'UTR 0.24 TCGA-A3-3358-01 7 5800759 5800759 T - RNF216 5'UTR 0.33 TCGA-A3-3358-01 7 66582492 66582492 C T TYW1 Silent p.L529L 0.36 TCGA-A3-3358-01 7 99695276 99695276 C T MCM7 Missense_Mutation p.G360R 0.36 deleterious(0) probably_damaging(1) TCGA-A3-3358-01 8 23116262 23116262 G A CHMP7 Silent p.Q326Q 0.27 TCGA-A3-3358-01 9 111624704 111624704 G A ACTL7A Silent p.R34R 0.25 TCGA-A3-3358-01 9 34662409 34662409 G T CCL27 Missense_Mutation p.F25L 0.24 tolerated(1) benign(0) TCGA-A3-3358-01 9 95060037 95060039 TTG - NOL8 3'UTR 0.19 TCGA-A3-3358-01 X 117527208 117527227 AGACTCTGAAAACTCCTGAT - WDR44 Frame_Shift_Del p.E267Dfs*11 0.12 TCGA-A3-3358-01 X 118780702 118780702 C T SEPT6 Intron 0.21 TCGA-A3-3358-01 X 132834052 132834052 C A GPC3 Missense_Mutation p.G369V 0.14 deleterious(0.04) benign(0.102) TCGA-A3-3358-01 X 134427883 134427883 C T ZNF75D Missense_Mutation p.G62R 0.29 deleterious(0) possibly_damaging(0.844) TCGA-A3-3358-01 X 27840135 27840135 C A MAGEB10 Missense_Mutation p.H238N 0.23 tolerated(0.06) benign(0.211) TCGA-A3-3358-01 X 48544489 48544489 A T WAS Silent p.P175P 0.20 TCGA-A3-3358-01 X 54276546 54276546 G T WNK3 Nonsense_Mutation p.S865* 0.21 TCGA-A3-3358-01 X 71426172 71426172 T A ERCC6L Silent p.P815P 0.25 TCGA-A3-3358-01 X 76777788 76777788 G T ATRX Missense_Mutation p.P2310T 0.19 benign(0.253) TCGA-A3-3362-01 10 70670871 70670871 C G DDX50 Missense_Mutation p.P170A 0.24 tolerated(0.53) benign(0.042) TCGA-A3-3362-01 10 75184106 75184106 G A MSS51 3'UTR 0.39 TCGA-A3-3362-01 11 86662562 86662562 G C FZD4 Silent p.A412A 0.29 TCGA-A3-3362-01 12 101584327 101584327 A G SLC5A8 Missense_Mutation p.F251S 0.20 deleterious(0.04) possibly_damaging(0.612) TCGA-A3-3362-01 12 30868061 30868061 C T CAPRIN2 Missense_Mutation p.D778N 0.20 deleterious(0.03) possibly_damaging(0.72) TCGA-A3-3362-01 12 52374878 52374878 T C ACVR1B Missense_Mutation p.F236L 0.20 deleterious(0) probably_damaging(0.995) TCGA-A3-3362-01 12 55614840 55614840 A T OR10A7 Missense_Mutation p.E11V 0.08 deleterious(0.01) benign(0.167) TCGA-A3-3362-01 12 57648628 57648628 C G R3HDM2 Silent p.V953V 0.17 TCGA-A3-3362-01 15 44776439 44776439 T G CTDSPL2 Silent p.P68P 0.11 TCGA-A3-3362-01 15 59944421 59944421 A G GTF2A2 Missense_Mutation p.L19P 0.07 deleterious(0) probably_damaging(0.999) TCGA-A3-3362-01 15 86279333 86279333 A T AKAP13 Missense_Mutation p.N2513Y 0.09 deleterious(0.01) possibly_damaging(0.844) TCGA-A3-3362-01 17 42225574 42225574 C T C17orf53 Missense_Mutation p.H135Y 0.19 tolerated(0.53) possibly_damaging(0.527) TCGA-A3-3362-01 17 71232490 71232490 T G C17orf80 Missense_Mutation p.I290S 0.23 tolerated(0.17) possibly_damaging(0.553) TCGA-A3-3362-01 19 16060085 16060085 C A OR10H4 Missense_Mutation p.H90N 0.12 tolerated(0.66) benign(0.002) TCGA-A3-3362-01 19 17014624 17014624 A - CPAMD8 Frame_Shift_Del p.L1479Cfs*48 0.25 TCGA-A3-3362-01 19 23543539 23543539 C A ZNF91 Missense_Mutation p.G748C 0.11 deleterious(0) probably_damaging(0.995) TCGA-A3-3362-01 19 49477487 49477487 G C GYS1 Missense_Mutation p.P511R 0.15 deleterious(0) probably_damaging(0.999) TCGA-A3-3362-01 1 153637769 153637769 A G ILF2 Silent p.S168S 0.23 TCGA-A3-3362-01 1 154031073 154031088 TGTCTGACACCCTGAG - NUP210L Frame_Shift_Del p.L978Yfs*8 0.22 TCGA-A3-3362-01 1 154031095 154031095 T A NUP210L Silent p.T975T 0.16 TCGA-A3-3362-01 1 169101886 169101886 C T NME7 3'UTR 0.24 TCGA-A3-3362-01 1 229738474 229738474 T G TAF5L Missense_Mutation p.Q147P 0.21 deleterious(0.03) probably_damaging(0.959) TCGA-A3-3362-01 1 23415419 23415419 C A LUZP1 Missense_Mutation p.R1067L 0.18 deleterious_low_confidence(0.01) benign(0.182) TCGA-A3-3362-01 1 43897031 43897031 C T SZT2 Missense_Mutation p.P1614L 0.17 tolerated(0.4) benign(0.007) TCGA-A3-3362-01 1 60359336 60359336 A T CYP2J2 Missense_Mutation p.V499D 0.24 deleterious(0) possibly_damaging(0.897) TCGA-A3-3362-01 20 32198915 32198915 A G CBFA2T2 Missense_Mutation p.N74S 0.21 tolerated(1) benign(0.003) TCGA-A3-3362-01 2 131981513 131981513 A - POTEE Frame_Shift_Del p.D236Vfs*18 0.20 TCGA-A3-3362-01 2 167055463 167055463 T - SCN9A Frame_Shift_Del p.I1885Ffs*10 0.41 TCGA-A3-3362-01 2 179468975 179468975 A G TTN Missense_Mutation p.Y18147H 0.14 TCGA-A3-3362-01 2 219942000 219942000 G A NHEJ1 Missense_Mutation p.P265S 0.23 tolerated(0.13) benign(0.025) TCGA-A3-3362-01 2 228882779 228882779 C T SPHKAP Missense_Mutation p.E931K 0.23 deleterious(0) probably_damaging(0.994) TCGA-A3-3362-01 3 10188321 10188321 G C VHL Splice_Site p.X155_splice 0.36 TCGA-A3-3362-01 3 151160939 151160939 A C IGSF10 Silent p.L1932L 0.11 TCGA-A3-3362-01 3 156009685 156009685 C T KCNAB1 Intron 0.27 TCGA-A3-3362-01 3 156009745 156009745 G T KCNAB1 Intron 0.38 TCGA-A3-3362-01 3 49168474 49168474 T C LAMB2 Missense_Mutation p.Y275C 0.10 deleterious(0) probably_damaging(0.999) TCGA-A3-3362-01 3 52649414 52649414 C A PBRM1 Missense_Mutation p.G626V 0.34 deleterious(0) probably_damaging(0.974) TCGA-A3-3362-01 4 128729255 128729255 A T HSPA4L Missense_Mutation p.H450L 0.22 tolerated(0.07) benign(0.001) TCGA-A3-3362-01 5 112458491 112458491 T G MCC Missense_Mutation p.E306A 0.15 tolerated(0.05) benign(0.359) TCGA-A3-3362-01 5 112899071 112899071 A T YTHDC2 Missense_Mutation p.E775V 0.11 deleterious(0.04) probably_damaging(0.979) TCGA-A3-3362-01 5 43555944 43555944 A T PAIP1 Silent p.S141S 0.29 TCGA-A3-3362-01 5 65455125 65455125 G T SREK1 Missense_Mutation p.G125V 0.08 deleterious(0) probably_damaging(0.923) TCGA-A3-3362-01 5 96350753 96350753 A G LNPEP Missense_Mutation p.N777S 0.09 tolerated(0.24) benign(0.026) TCGA-A3-3362-01 6 119345803 119345803 T C FAM184A Missense_Mutation p.E112G 0.07 deleterious(0) probably_damaging(0.994) TCGA-A3-3362-01 6 31928300 31928300 C T SKIV2L Missense_Mutation p.P149L 0.24 tolerated(0.06) benign(0.05) TCGA-A3-3362-01 6 52129392 52129392 G A MCM3 Silent p.L852L 0.24 TCGA-A3-3362-01 6 86215537 86215537 G A SNX14 3'UTR 0.22 TCGA-A3-3362-01 7 124487019 124487019 C A POT1 Missense_Mutation p.R328I 0.16 deleterious(0) benign(0.132) TCGA-A3-3362-01 7 23728936 23728936 C T FAM221A Silent p.P96P 0.33 TCGA-A3-3362-01 9 114293241 114293241 T A ZNF483 Missense_Mutation p.C167S 0.07 tolerated(0.46) benign(0.152) TCGA-A3-3362-01 9 114305026 114305026 A - ZNF483 Frame_Shift_Del p.K605Nfs*10 0.20 TCGA-A3-3362-01 9 35704041 35704041 C T TLN1 Missense_Mutation p.D2060N 0.15 tolerated(0.07) benign(0.086) TCGA-A3-3362-01 9 39103777 39103777 G - CNTNAP3 Frame_Shift_Del p.L834Wfs*17 0.27 TCGA-A3-3362-01 9 6420988 6420988 C G UHRF2 Missense_Mutation p.P77R 0.24 tolerated(0.28) benign(0.177) TCGA-A3-3362-01 X 107457373 107457373 G A COL4A6 Missense_Mutation p.P138L 0.17 unknown(0) TCGA-A3-3362-01 X 130411140 130411140 C A IGSF1 Missense_Mutation p.R799L 0.12 deleterious(0.02) benign(0.23) TCGA-A3-3362-01 X 34961787 34961787 C T FAM47B Missense_Mutation p.A280V 0.24 tolerated(1) benign(0.004) TCGA-A3-3363-01 10 17110165 17110165 A G CUBN Missense_Mutation p.L969P 0.42 deleterious(0) probably_damaging(0.995) TCGA-A3-3363-01 10 96043555 96043555 C T PLCE1 Silent p.L1602L 0.38 TCGA-A3-3363-01 11 17351711 17351711 T C NUCB2 Missense_Mutation p.L347P 0.42 deleterious(0) probably_damaging(0.999) TCGA-A3-3363-01 11 9043470 9043470 G T SCUBE2 Silent p.R906R 0.05 TCGA-A3-3363-01 12 12618552 12618552 C T LOH12CR1 Nonsense_Mutation p.Q145* 0.43 TCGA-A3-3363-01 12 133384990 133384990 T G GOLGA3 Missense_Mutation p.K222T 0.39 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-A3-3363-01 12 45568052 45568052 T C PLEKHA8P1 RNA 0.38 TCGA-A3-3363-01 12 4702286 4702286 A T DYRK4 Missense_Mutation p.K79N 0.31 tolerated(0.48) benign(0.14) TCGA-A3-3363-01 13 49772609 49772609 T C FNDC3A Silent p.F962F 0.06 TCGA-A3-3363-01 13 76335071 76335071 A G LMO7 5'UTR 0.39 TCGA-A3-3363-01 14 21873953 21873953 A G CHD8 Missense_Mutation p.F993S 0.81 deleterious(0) probably_damaging(0.996) TCGA-A3-3363-01 14 70170292 70170292 G A KIAA0247 Missense_Mutation p.S101N 0.85 tolerated(0.24) probably_damaging(0.967) TCGA-A3-3363-01 15 32928531 32928531 G - ARHGAP11A Frame_Shift_Del p.M519Ifs*14 0.31 TCGA-A3-3363-01 15 63354948 63354948 C T TPM1 Intron 0.43 TCGA-A3-3363-01 15 90349564 90349564 G T ANPEP Missense_Mutation p.S84Y 0.46 tolerated(0.69) benign(0.248) TCGA-A3-3363-01 16 133207 133207 G A MPG Missense_Mutation p.V158M 0.38 deleterious(0) probably_damaging(0.996) TCGA-A3-3363-01 16 58589212 58589212 G C CNOT1 Missense_Mutation p.P945R 0.38 deleterious(0.03) benign(0.288) TCGA-A3-3363-01 16 74447509 74447509 C T CLEC18B Silent p.A174A 0.18 TCGA-A3-3363-01 17 8168629 8168629 G C PFAS Missense_Mutation p.W768C 0.22 deleterious(0) probably_damaging(1) TCGA-A3-3363-01 19 13249317 13249317 C G NACC1 3'UTR 0.45 TCGA-A3-3363-01 19 36303703 36303703 A G PRODH2 Missense_Mutation p.L78P 0.27 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-A3-3363-01 1 100964760 100964760 G A CDC14A Missense_Mutation p.R566Q 0.42 tolerated_low_confidence(0.26) possibly_damaging(0.565) TCGA-A3-3363-01 1 109642843 109642843 C A TMEM167B 3'Flank 0.36 TCGA-A3-3363-01 1 145474166 145474166 C G ANKRD34A Missense_Mutation p.L280V 0.40 tolerated(0.09) benign(0.008) TCGA-A3-3363-01 1 150923430 150923430 T C SETDB1 Missense_Mutation p.C693R 0.31 deleterious(0) probably_damaging(0.999) TCGA-A3-3363-01 1 159897631 159897631 G A IGSF9 Missense_Mutation p.P1093S 0.32 tolerated_low_confidence(0.06) possibly_damaging(0.692) TCGA-A3-3363-01 1 228400286 228400286 G A OBSCN Missense_Mutation p.E268K 0.21 benign(0.288) TCGA-A3-3363-01 1 40229518 40229518 C T PPIE 3'UTR 0.21 TCGA-A3-3363-01 1 68611602 68611602 T C WLS Missense_Mutation p.K408E 0.38 deleterious(0) probably_damaging(0.999) TCGA-A3-3363-01 1 8419828 8419828 G A RERE Missense_Mutation p.A1205V 0.40 unknown(0) TCGA-A3-3363-01 20 36024642 36024642 G A SRC Missense_Mutation p.D211N 0.82 deleterious(0) possibly_damaging(0.528) TCGA-A3-3363-01 20 45315610 45315610 T C TP53RK Missense_Mutation p.I182V 0.05 deleterious(0.02) benign(0.433) TCGA-A3-3363-01 2 175301104 175301104 C A GPR155 Missense_Mutation p.D785Y 0.34 deleterious(0) probably_damaging(0.992) TCGA-A3-3363-01 2 196729403 196729403 T C DNAH7 Missense_Mutation p.I2326V 0.42 tolerated(0.14) probably_damaging(0.915) TCGA-A3-3363-01 2 20647327 20647327 A G RHOB Missense_Mutation p.Y34C 0.36 deleterious(0) probably_damaging(0.999) TCGA-A3-3363-01 2 24307066 24307066 A G TP53I3 Missense_Mutation p.L44S 0.49 deleterious(0) probably_damaging(0.989) TCGA-A3-3363-01 2 27258869 27258869 C T TMEM214 Silent p.I223I 0.44 TCGA-A3-3363-01 3 123634543 123634543 T C CCDC14 Missense_Mutation p.K608E 0.06 deleterious(0.01) possibly_damaging(0.801) TCGA-A3-3363-01 3 52387249 52387249 T C DNAH1 Missense_Mutation p.L1053P 0.30 probably_damaging(0.961) TCGA-A3-3363-01 3 53845394 53845394 G C CACNA1D Missense_Mutation p.E2169D 0.38 tolerated_low_confidence(0.14) probably_damaging(0.987) TCGA-A3-3363-01 4 265156 265156 G C ZNF732 Missense_Mutation p.T497S 0.40 tolerated(0.15) benign(0.001) TCGA-A3-3363-01 4 493095 493095 C T PIGG 5'UTR 0.37 TCGA-A3-3363-01 5 140209828 140209828 T C PCDHA6 Missense_Mutation p.Y718H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.584) TCGA-A3-3363-01 5 33576716 33576716 G A ADAMTS12 Missense_Mutation p.P1139S 0.42 tolerated(0.69) benign(0.002) TCGA-A3-3363-01 6 143811741 143811741 T A FUCA2 3'Flank 0.29 TCGA-A3-3363-01 6 155123148 155123148 C A SCAF8 Missense_Mutation p.P217H 0.48 deleterious(0) unknown(0) TCGA-A3-3363-01 6 157511244 157511244 G A ARID1B Missense_Mutation p.M1254I 0.30 benign(0.097) TCGA-A3-3363-01 6 26205069 26205069 T C HIST1H4E Missense_Mutation p.V66A 0.43 deleterious(0.02) benign(0.438) TCGA-A3-3363-01 6 30691536 30691543 ATGAGTGG - TUBB Frame_Shift_Del p.M233Cfs*14 0.32 TCGA-A3-3363-01 6 41002736 41002736 A G UNC5CL Silent p.L26L 0.41 TCGA-A3-3363-01 6 42931981 42931981 C G PEX6 3'UTR 0.49 TCGA-A3-3363-01 6 46977033 46977033 A T GPR110 Missense_Mutation p.I713K 0.36 deleterious(0) probably_damaging(1) TCGA-A3-3363-01 7 127965927 127965927 A C RBM28 Missense_Mutation p.F383V 0.22 deleterious(0) probably_damaging(0.999) TCGA-A3-3363-01 7 150715068 150715068 G A ATG9B Missense_Mutation p.R648C 0.09 deleterious(0.02) probably_damaging(0.949) TCGA-A3-3363-01 7 17833769 17833769 A G SNX13 Missense_Mutation p.F925S 0.86 deleterious(0) probably_damaging(0.994) TCGA-A3-3363-01 7 94055151 94055151 T A COL1A2 Missense_Mutation p.H975Q 0.25 unknown(0) TCGA-A3-3363-01 8 86019572 86019572 G T LRRCC1 Silent p.V14V 0.35 TCGA-A3-3363-01 9 136649535 136649535 T C VAV2 Missense_Mutation p.N513S 0.43 deleterious(0.01) possibly_damaging(0.651) TCGA-A3-3363-01 9 14846003 14846003 G A FREM1 Silent p.L450L 0.35 TCGA-A3-3363-01 9 35736669 35736669 A G CREB3 Silent p.G354G 0.35 TCGA-A3-3365-01 10 5790396 5790396 T G FAM208B Missense_Mutation p.V1671G 0.07 deleterious(0.01) benign(0.008) TCGA-A3-3365-01 10 74128087 74128087 A G MICU1 Missense_Mutation p.F433L 0.15 tolerated(0.05) possibly_damaging(0.831) TCGA-A3-3365-01 11 111591712 111591712 A C SIK2 Missense_Mutation p.I624L 0.19 tolerated(0.29) benign(0) TCGA-A3-3365-01 11 82905759 82905759 C T ANKRD42 Missense_Mutation p.T16I 0.17 deleterious(0.03) benign(0.101) TCGA-A3-3365-01 11 85367530 85367531 - A TMEM126A Frame_Shift_Ins p.E193Rfs*? 0.10 TCGA-A3-3365-01 12 49447312 49447312 G A KMT2D Silent p.A262A 0.24 TCGA-A3-3365-01 12 49447313 49447313 G T KMT2D Missense_Mutation p.A262D 0.22 unknown(0) TCGA-A3-3365-01 13 22067484 22067484 T C MICU2 Silent p.Q403Q 0.19 TCGA-A3-3365-01 13 32910986 32910986 G A BRCA2 Missense_Mutation p.E832K 0.22 tolerated(0.16) benign(0.169) TCGA-A3-3365-01 13 48835349 48835350 AT G ITM2B Frame_Shift_Del p.I264Vfs*19 0.15 TCGA-A3-3365-01 14 24528566 24528566 G A LRRC16B Missense_Mutation p.A572T 0.08 tolerated(1) benign(0.013) TCGA-A3-3365-01 14 59954452 59954452 C G JKAMP Missense_Mutation p.P53A 0.20 tolerated(0.06) probably_damaging(1) TCGA-A3-3365-01 14 70242936 70242936 T A SLC10A1 3'UTR 0.21 TCGA-A3-3365-01 15 41679610 41679610 T C NDUFAF1 3'UTR 0.26 TCGA-A3-3365-01 17 39919273 39919273 T G JUP Missense_Mutation p.K487Q 0.25 deleterious(0.01) possibly_damaging(0.817) TCGA-A3-3365-01 17 48252717 48252717 C G SGCA Silent p.P361P 0.26 TCGA-A3-3365-01 19 45284600 45284600 G C CBLC Missense_Mutation p.V213L 0.16 deleterious(0.05) benign(0.012) TCGA-A3-3365-01 19 58967919 58967919 C A ZNF324B Missense_Mutation p.S536R 0.19 deleterious_low_confidence(0.03) benign(0.005) TCGA-A3-3365-01 1 117663955 117663958 AAAT - TRIM45 5'UTR 0.15 TCGA-A3-3365-01 1 155030769 155030770 CT G ADAM15 Frame_Shift_Del p.P590Rfs*14 0.15 TCGA-A3-3365-01 1 156627509 156627509 C - BCAN Frame_Shift_Del p.I752Sfs*104 0.25 TCGA-A3-3365-01 1 15855691 15855691 T C DNAJC16 Missense_Mutation p.Y31H 0.20 deleterious(0) probably_damaging(1) TCGA-A3-3365-01 1 232650730 232650730 C G SIPA1L2 Missense_Mutation p.S119T 0.21 tolerated(0.57) benign(0.027) TCGA-A3-3365-01 1 33402681 33402681 C G RNF19B Missense_Mutation p.C642S 0.03 tolerated_low_confidence(0.23) benign(0.026) TCGA-A3-3365-01 1 47403749 47403749 A G CYP4A11 Missense_Mutation p.C86R 0.18 tolerated(0.1) benign(0.053) TCGA-A3-3365-01 1 85279467 85279467 T C LPAR3 3'UTR 0.14 TCGA-A3-3365-01 20 57015985 57015985 T C VAPB Missense_Mutation p.I140T 0.25 tolerated(0.55) benign(0.017) TCGA-A3-3365-01 22 18220987 18220987 G C BID Missense_Mutation p.N170K 0.17 tolerated(0.38) benign(0.038) TCGA-A3-3365-01 2 216236992 216236992 C A FN1 Silent p.G2118G 0.25 TCGA-A3-3365-01 2 283140 283140 C A FAM150B Missense_Mutation p.A142S 0.15 deleterious(0) probably_damaging(0.964) TCGA-A3-3365-01 2 55253832 55253832 T G RTN4 Missense_Mutation p.N468T 0.08 tolerated(0.16) benign(0.005) TCGA-A3-3365-01 3 143297454 143297454 C A SLC9A9 Silent p.G289G 0.26 TCGA-A3-3365-01 3 52696164 52696164 G - PBRM1 Frame_Shift_Del p.T172Qfs*2 0.27 TCGA-A3-3365-01 3 64007994 64007994 T G PSMD6 Missense_Mutation p.K117N 0.26 deleterious(0.02) probably_damaging(0.973) TCGA-A3-3365-01 3 97661478 97661478 T A MINA 3'UTR 0.62 TCGA-A3-3365-01 4 83970374 83970374 C A COPS4 Nonsense_Mutation p.C70* 0.17 TCGA-A3-3365-01 4 843678 843678 A G GAK Splice_Site p.X1278_splice 0.25 TCGA-A3-3365-01 4 87653571 87653571 T C PTPN13 Missense_Mutation p.F543L 0.32 deleterious(0) probably_damaging(0.999) TCGA-A3-3365-01 4 884397 884397 T C GAK Missense_Mutation p.N335S 0.20 tolerated(0.08) possibly_damaging(0.655) TCGA-A3-3365-01 5 134079711 134079711 C T CAMLG Missense_Mutation p.A223V 0.13 tolerated(0.09) benign(0.024) TCGA-A3-3365-01 5 140869551 140869551 T A PCDHGC5 Silent p.R248R 0.21 TCGA-A3-3365-01 5 147009293 147009293 T G JAKMIP2 Missense_Mutation p.D631A 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-A3-3365-01 5 5209271 5209271 A T ADAMTS16 Missense_Mutation p.K506I 0.23 deleterious(0) possibly_damaging(0.863) TCGA-A3-3365-01 6 142691426 142691426 G A GPR126 Missense_Mutation p.A189T 0.20 tolerated(0.12) possibly_damaging(0.856) TCGA-A3-3365-01 6 87966445 87966445 T A ZNF292 Missense_Mutation p.V1033E 0.21 deleterious_low_confidence(0.03) benign(0.224) TCGA-A3-3365-01 7 100361427 100361427 A G ZAN Splice_Site p.X1329_splice 0.23 TCGA-A3-3365-01 7 72856668 72856668 A G BAZ1B Missense_Mutation p.V1437A 0.23 tolerated(0.81) benign(0.013) TCGA-A3-3365-01 9 14307384 14307385 CT - NFIB Frame_Shift_Del p.R55Sfs*5 0.21 TCGA-A3-3365-01 X 153135050 153135050 C T L1CAM Missense_Mutation p.D398N 0.30 deleterious(0) probably_damaging(1) TCGA-A3-3367-01 10 28233812 28233812 G T ARMC4 Missense_Mutation p.A489D 0.21 deleterious(0) probably_damaging(0.993) TCGA-A3-3367-01 10 64936178 64936178 T A JMJD1C Missense_Mutation p.Q2427L 0.27 deleterious(0) probably_damaging(0.999) TCGA-A3-3367-01 10 73544690 73544690 C T CDH23 Missense_Mutation p.P1854S 0.35 deleterious(0) benign(0.139) TCGA-A3-3367-01 10 7839091 7839091 G T ATP5C1 Missense_Mutation p.R58L 0.24 deleterious(0.02) benign(0.103) TCGA-A3-3367-01 11 108381263 108381263 G A EXPH5 Silent p.S1657S 0.35 TCGA-A3-3367-01 11 111431066 111431066 G A LAYN Silent p.V344V 0.33 TCGA-A3-3367-01 11 17418564 17418564 C G ABCC8 Missense_Mutation p.D1340H 0.32 tolerated(0.12) benign(0.005) TCGA-A3-3367-01 11 34489943 34489946 GTGA - CAT Splice_Site p.X478_splice 0.41 TCGA-A3-3367-01 11 47774573 47774573 G A FNBP4 Missense_Mutation p.P178S 0.11 tolerated(0.12) probably_damaging(0.952) TCGA-A3-3367-01 11 62396249 62396249 A G GANAB Silent p.P746P 0.08 TCGA-A3-3367-01 11 62762194 62762195 - A SLC22A8 Frame_Shift_Ins p.M346Yfs*90 0.32 TCGA-A3-3367-01 11 70017113 70017113 G A ANO1 Missense_Mutation p.R773Q 0.24 deleterious(0) benign(0.187) TCGA-A3-3367-01 11 70031793 70031793 G A ANO1 Missense_Mutation p.V896I 0.26 tolerated(0.27) possibly_damaging(0.863) TCGA-A3-3367-01 11 75298336 75298336 T C MAP6 Missense_Mutation p.N737S 0.36 tolerated_low_confidence(0.14) benign(0.01) TCGA-A3-3367-01 12 51281383 51281383 A C TMPRSS12 3'UTR 0.39 TCGA-A3-3367-01 13 47409096 47409096 T C HTR2A Missense_Mutation p.N431S 0.03 tolerated(0.64) benign(0) TCGA-A3-3367-01 13 52951880 52951880 T - THSD1 Frame_Shift_Del p.D742Vfs*6 0.13 TCGA-A3-3367-01 14 67390942 67390943 - C GPHN Frame_Shift_Ins p.M255Hfs*5 0.29 TCGA-A3-3367-01 14 75416059 75416059 C T PGF Splice_Site p.X105_splice 0.34 TCGA-A3-3367-01 15 53081592 53081592 G T ONECUT1 Missense_Mutation p.L164I 0.36 tolerated(0.06) benign(0.134) TCGA-A3-3367-01 16 21147728 21147728 G A DNAH3 Missense_Mutation p.T268M 0.22 tolerated(0.12) benign(0.007) TCGA-A3-3367-01 16 4511892 4511892 G A NMRAL1 Silent p.F263F 0.30 TCGA-A3-3367-01 17 10728814 10728814 T A PIRT Missense_Mutation p.E50V 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-A3-3367-01 17 41004871 41004871 C A AOC3 Missense_Mutation p.T504N 0.32 tolerated(0.08) benign(0.019) TCGA-A3-3367-01 17 42828502 42828502 G A DBF4B Missense_Mutation p.A577T 0.34 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-A3-3367-01 17 7350242 7350247 GACGTG T CHRNB1 Frame_Shift_Del p.D112Cfs*7 0.39 TCGA-A3-3367-01 17 7942501 7942501 A G ALOX15B Missense_Mutation p.T10A 0.27 deleterious(0) possibly_damaging(0.816) TCGA-A3-3367-01 18 18549140 18549140 T G ROCK1 Missense_Mutation p.K950N 0.39 tolerated(0.11) benign(0.003) TCGA-A3-3367-01 18 28898303 28898303 A G DSG1 Missense_Mutation p.I14V 0.38 tolerated(0.08) benign(0.017) TCGA-A3-3367-01 18 63547734 63547734 T A CDH7 Missense_Mutation p.D654E 0.40 deleterious(0) probably_damaging(0.993) TCGA-A3-3367-01 19 10421114 10421114 A G FDX1L 3'UTR 0.09 TCGA-A3-3367-01 19 1074198 1074198 A T HMHA1 Missense_Mutation p.M312L 0.38 tolerated(0.18) benign(0.003) TCGA-A3-3367-01 19 14829357 14829357 C T ZNF333 Silent p.S406S 0.37 TCGA-A3-3367-01 19 19627139 19627139 C T NDUFA13 Missense_Mutation p.S31L 0.32 deleterious(0) probably_damaging(0.941) TCGA-A3-3367-01 19 23545331 23545331 C G ZNF91 Missense_Mutation p.Q150H 0.39 tolerated(0.26) possibly_damaging(0.707) TCGA-A3-3367-01 19 51957520 51957520 C - SIGLEC8 Frame_Shift_Del p.D400Ifs*19 0.41 TCGA-A3-3367-01 19 53912142 53912142 A G ZNF765 Missense_Mutation p.K445R 0.04 tolerated(0.05) benign(0.042) TCGA-A3-3367-01 19 56244059 56244059 T A NLRP9 Missense_Mutation p.S380C 0.29 tolerated(0.18) benign(0.023) TCGA-A3-3367-01 19 58419716 58419716 G C ZNF417 3'UTR 0.23 TCGA-A3-3367-01 19 58921394 58921394 T G ZNF584 Missense_Mutation p.N35K 0.31 deleterious(0.01) benign(0.438) TCGA-A3-3367-01 1 113456771 113456771 C G SLC16A1 Missense_Mutation p.M415I 0.04 tolerated(0.67) benign(0) TCGA-A3-3367-01 1 156268547 156268547 G C VHLL 3'UTR 0.33 TCGA-A3-3367-01 1 158326527 158326527 G A CD1E Silent p.K336K 0.08 TCGA-A3-3367-01 1 16458586 16458586 G A EPHA2 Silent p.D766D 0.11 TCGA-A3-3367-01 1 173950062 173950074 GAGTCATGTTCTC - RC3H1 Frame_Shift_Del p.R281Pfs*3 0.20 TCGA-A3-3367-01 1 19401274 19401274 G C UBR4 3'UTR 0.39 TCGA-A3-3367-01 1 196879578 196879578 G T CFHR4 Missense_Mutation p.D322Y 0.30 deleterious(0.03) possibly_damaging(0.799) TCGA-A3-3367-01 1 200956041 200956046 CTAGGG - KIF21B In_Frame_Del p.F1205_R1207delinsL 0.30 TCGA-A3-3367-01 1 225971002 225971002 G A SRP9 Missense_Mutation p.A25T 0.33 tolerated(0.5) benign(0.008) TCGA-A3-3367-01 1 238048491 238048491 C A ZP4 Missense_Mutation p.V429L 0.31 tolerated(0.24) benign(0.005) TCGA-A3-3367-01 1 55182358 55182358 C T TTC4 Missense_Mutation p.S66L 0.05 deleterious(0.01) benign(0.23) TCGA-A3-3367-01 1 6246862 6246862 A G RPL22 Missense_Mutation p.L86P 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-A3-3367-01 1 78162869 78162869 T C USP33 3'UTR 0.39 TCGA-A3-3367-01 1 99156689 99156689 T A SNX7 Missense_Mutation p.F141Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-A3-3367-01 20 32379290 32379290 C T ZNF341 Silent p.L837L 0.08 TCGA-A3-3367-01 20 4771138 4771138 G A RASSF2 Missense_Mutation p.R166C 0.11 deleterious(0) probably_damaging(0.983) TCGA-A3-3367-01 20 62850364 62850364 G A MYT1 Silent p.T649T 0.21 TCGA-A3-3367-01 20 9319619 9319632 AGTGGCACAGATCT - PLCB4 Frame_Shift_Del p.G103Efs*3 0.11 TCGA-A3-3367-01 22 17489072 17489072 A C GAB4 5'UTR 0.33 TCGA-A3-3367-01 22 19776236 19776236 G T GNB1L Missense_Mutation p.A327E 0.29 deleterious_low_confidence(0.02) benign(0.041) TCGA-A3-3367-01 22 36723503 36723504 - A MYH9 Intron 0.35 TCGA-A3-3367-01 22 45959178 45959178 T A FBLN1 Intron 0.19 TCGA-A3-3367-01 22 51117747 51117747 G A SHANK3 Missense_Mutation p.R259H 0.07 probably_damaging(0.998) TCGA-A3-3367-01 2 113145965 113145965 A T RGPD8 Silent p.V1519V 0.16 TCGA-A3-3367-01 2 113145967 113145967 C T RGPD8 Missense_Mutation p.V1519I 0.17 tolerated(0.14) benign(0.027) TCGA-A3-3367-01 2 11772090 11772090 A G GREB1 Missense_Mutation p.H1556R 0.34 deleterious(0) probably_damaging(0.988) TCGA-A3-3367-01 2 175614794 175614794 A G CHRNA1 Silent p.I319I 0.36 TCGA-A3-3367-01 2 216986866 216986890 CTTTCCACTAAAAGGAATTACCGAA - XRCC5 Frame_Shift_Del p.F192Sfs*8 0.18 TCGA-A3-3367-01 2 238249699 238249699 C T COL6A3 Missense_Mutation p.M2620I 0.11 unknown(0) TCGA-A3-3367-01 3 10188262 10188263 - TTTT VHL Frame_Shift_Ins p.V137Ffs*8 0.49 TCGA-A3-3367-01 3 130286060 130286063 GAAA - COL6A6 Frame_Shift_Del p.K600Tfs*2 0.32 TCGA-A3-3367-01 3 130377533 130377533 G A COL6A6 Missense_Mutation p.G1916D 0.05 deleterious(0.01) probably_damaging(0.974) TCGA-A3-3367-01 3 154862150 154862150 C A MME Silent p.V440V 0.32 TCGA-A3-3367-01 3 45988808 45988808 C T CXCR6 Silent p.L279L 0.48 TCGA-A3-3367-01 3 47058645 47058646 - A SETD2 Frame_Shift_Ins p.K2545* 0.20 TCGA-A3-3367-01 3 47061239 47061249 CCAAACCTTAC - SETD2 Splice_Site p.X2477_splice 0.21 TCGA-A3-3367-01 3 52651339 52651339 A G PBRM1 Missense_Mutation p.M586T 0.54 deleterious(0) possibly_damaging(0.55) TCGA-A3-3367-01 4 123843511 123843511 C T NUDT6 Missense_Mutation p.A73T 0.23 tolerated(0.52) benign(0.003) TCGA-A3-3367-01 4 69817503 69817503 T A UGT2A3 5'UTR 0.32 TCGA-A3-3367-01 4 75695313 75695313 C A BTC Nonsense_Mutation p.E40* 0.08 TCGA-A3-3367-01 5 131396700 131396700 T A IL3 Missense_Mutation p.M68K 0.27 tolerated(0.93) benign(0.012) TCGA-A3-3367-01 5 140699694 140699694 G C TAF7 5'UTR 0.42 TCGA-A3-3367-01 5 146236091 146236091 T A PPP2R2B Intron 0.32 TCGA-A3-3367-01 5 150646946 150646946 C T GM2A Silent p.S172S 0.10 TCGA-A3-3367-01 5 86564517 86564517 A G RASA1 Silent p.G83G 0.33 TCGA-A3-3367-01 6 100395756 100395756 G T MCHR2 Missense_Mutation p.Q92K 0.38 deleterious(0) probably_damaging(0.999) TCGA-A3-3367-01 6 36294388 36294388 C T C6orf222 Missense_Mutation p.G312E 0.09 deleterious(0.01) benign(0.1) TCGA-A3-3367-01 7 150270155 150270155 T C GIMAP4 3'UTR 0.41 TCGA-A3-3367-01 7 74299901 74299903 CGC AG STAG3L2 RNA 0.14 TCGA-A3-3367-01 8 124664647 124664647 C G KLHL38 Missense_Mutation p.E174Q 0.35 tolerated(0.1) benign(0.063) TCGA-A3-3367-01 8 17612685 17612685 G T MTUS1 Missense_Mutation p.S211Y 0.32 deleterious(0.05) possibly_damaging(0.617) TCGA-A3-3367-01 8 62212689 62212689 C T CLVS1 Silent p.R101R 0.38 TCGA-A3-3367-01 8 87500826 87500826 C G RMDN1 Missense_Mutation p.G97A 0.29 tolerated(0.16) benign(0.316) TCGA-A3-3367-01 9 136029294 136029294 C G GBGT1 Missense_Mutation p.Q238H 0.35 tolerated(0.09) benign(0.101) TCGA-A3-3367-01 9 43627074 43627074 T C SPATA31A6 Missense_Mutation p.H538R 0.31 tolerated(0.27) benign(0.056) TCGA-A3-3367-01 X 131234681 131234681 C A FRMD7 Nonsense_Mutation p.E41* 0.18 TCGA-A3-3367-01 X 24006422 24006422 C A KLHL15 Silent p.A477A 0.17 TCGA-A3-3370-01 10 16737058 16737058 T A RSU1 Missense_Mutation p.H232L 0.07 tolerated(0.06) possibly_damaging(0.702) TCGA-A3-3370-01 10 97135759 97135759 A G SORBS1 Missense_Mutation p.F570L 0.19 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-A3-3370-01 11 36302301 36302301 T G COMMD9 Silent p.T46T 0.30 TCGA-A3-3370-01 11 65272965 65272965 T C MALAT1 RNA 0.23 TCGA-A3-3370-01 12 133220012 133220012 C G POLE Missense_Mutation p.Q1475H 0.20 tolerated(0.16) benign(0.003) TCGA-A3-3370-01 12 92539272 92539272 C T BTG1 Missense_Mutation p.E14K 0.25 deleterious(0.03) probably_damaging(0.925) TCGA-A3-3370-01 14 103394801 103394801 A T AMN Silent p.G82G 0.38 TCGA-A3-3370-01 14 20403973 20403973 T A OR4K1 Missense_Mutation p.S50T 0.08 tolerated(0.77) benign(0.027) TCGA-A3-3370-01 14 20404157 20404157 A G OR4K1 Missense_Mutation p.E111G 0.10 deleterious(0) probably_damaging(0.999) TCGA-A3-3370-01 14 50110308 50110308 C A POLE2 3'UTR 0.19 TCGA-A3-3370-01 14 78140153 78140153 T C ALKBH1 3'UTR 0.19 TCGA-A3-3370-01 15 100269538 100269538 C T LYSMD4 Silent p.L228L 0.21 TCGA-A3-3370-01 15 51276219 51276221 TTC - AP4E1 In_Frame_Del p.L657del 0.09 TCGA-A3-3370-01 15 51837940 51837940 A C DMXL2 Nonsense_Mutation p.L257* 0.24 TCGA-A3-3370-01 16 24268220 24268220 G A CACNG3 Missense_Mutation p.E49K 0.12 tolerated(0.11) benign(0.4) TCGA-A3-3370-01 16 28113239 28113239 C T XPO6 Missense_Mutation p.D992N 0.08 deleterious(0) probably_damaging(1) TCGA-A3-3370-01 16 57060312 57060312 C G NLRC5 Missense_Mutation p.A486G 0.19 deleterious(0.02) benign(0.354) TCGA-A3-3370-01 17 33679558 33679558 T C SLFN11 Silent p.A841A 0.24 TCGA-A3-3370-01 17 40997011 40997011 T C AOC2 Missense_Mutation p.I123T 0.25 deleterious(0.02) possibly_damaging(0.786) TCGA-A3-3370-01 17 57737836 57737836 G A CLTC Missense_Mutation p.A352T 0.23 deleterious(0.01) probably_damaging(1) TCGA-A3-3370-01 17 78059827 78059827 T A CCDC40 Missense_Mutation p.L754H 0.22 deleterious(0) benign(0.092) TCGA-A3-3370-01 1 45984673 45984673 A G PRDX1 Missense_Mutation p.F15L 0.18 deleterious(0.01) probably_damaging(1) TCGA-A3-3370-01 1 55089083 55089083 G T FAM151A 5'UTR 0.16 TCGA-A3-3370-01 1 90049715 90049715 C T LRRC8B Silent p.I502I 0.20 TCGA-A3-3370-01 20 45355557 45355557 T A SLC2A10 Missense_Mutation p.F448Y 0.16 tolerated(0.06) probably_damaging(0.993) TCGA-A3-3370-01 21 32638828 32638828 G A TIAM1 Missense_Mutation p.S154F 0.08 deleterious_low_confidence(0.03) benign(0.188) TCGA-A3-3370-01 21 33043798 33043798 T A SCAF4 Nonsense_Mutation p.K1120* 0.14 TCGA-A3-3370-01 2 106694361 106694361 C T C2orf40 Silent p.S142S 0.06 TCGA-A3-3370-01 2 141143576 141143576 T C LRP1B Missense_Mutation p.K3473E 0.22 benign(0.292) TCGA-A3-3370-01 2 1652393 1652393 G A PXDN Silent p.Y1053Y 0.15 TCGA-A3-3370-01 2 175346633 175346634 - G GPR155 Frame_Shift_Ins p.K18Qfs*12 0.14 TCGA-A3-3370-01 2 202590152 202590152 T C ALS2 Missense_Mutation p.K1092E 0.17 deleterious(0.02) possibly_damaging(0.739) TCGA-A3-3370-01 2 74043728 74043728 A C C2orf78 Missense_Mutation p.Q793P 0.27 tolerated(0.26) possibly_damaging(0.452) TCGA-A3-3370-01 2 95847736 95847736 A - ZNF2 Frame_Shift_Del p.H388Lfs*38 0.16 TCGA-A3-3370-01 3 31774806 31774806 G T OSBPL10 Silent p.T346T 0.32 TCGA-A3-3370-01 4 107157650 107157650 C T TBCK Missense_Mutation p.S416N 0.16 deleterious(0.03) benign(0.099) TCGA-A3-3370-01 4 186066922 186066922 C G SLC25A4 Missense_Mutation p.P203R 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-A3-3370-01 5 138707793 138707793 C A SLC23A1 Missense_Mutation p.V571F 0.19 tolerated(0.13) benign(0.003) TCGA-A3-3370-01 5 53814577 53814577 T A SNX18 Nonsense_Mutation p.Y265* 0.24 TCGA-A3-3370-01 5 76249908 76249908 C T CRHBP Missense_Mutation p.P77L 0.15 deleterious(0) benign(0.027) TCGA-A3-3370-01 6 139233902 139233902 C T REPS1 Silent p.P656P 0.12 TCGA-A3-3370-01 6 36922553 36922553 G T PI16 Missense_Mutation p.S6I 0.12 deleterious(0.02) possibly_damaging(0.564) TCGA-A3-3370-01 7 151879304 151879304 C G KMT2C Missense_Mutation p.V1881L 0.19 benign(0.005) TCGA-A3-3370-01 7 50607651 50607651 T C DDC Missense_Mutation p.M93V 0.10 deleterious(0) benign(0.417) TCGA-A3-3370-01 8 55055338 55055338 G A MRPL15 Missense_Mutation p.R182K 0.17 tolerated(0.45) benign(0.001) TCGA-A3-3370-01 9 138703212 138703212 G A CAMSAP1 Silent p.N1584N 0.14 TCGA-A3-3370-01 X 41091721 41091721 C G USP9X Missense_Mutation p.Q2553E 0.18 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-A3-3370-01 X 64958995 64958995 G A MSN Missense_Mutation p.R503H 0.21 tolerated(0.11) benign(0.075) TCGA-A3-3373-01 10 116075322 116075322 A - AFAP1L2 Frame_Shift_Del p.L204Cfs*15 0.26 TCGA-A3-3373-01 10 120801706 120801706 G A EIF3A Missense_Mutation p.P1109L 0.29 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-A3-3373-01 10 120801712 120801712 C T EIF3A Missense_Mutation p.R1107Q 0.30 deleterious_low_confidence(0) benign(0.238) TCGA-A3-3373-01 10 93622703 93622703 G - TNKS2 Frame_Shift_Del p.E1150Sfs*3 0.20 TCGA-A3-3373-01 11 10536408 10536408 C A RNF141 3'UTR 0.24 TCGA-A3-3373-01 11 61323583 61323583 C G SYT7 Missense_Mutation p.R43P 0.21 deleterious_low_confidence(0) benign(0.024) TCGA-A3-3373-01 11 85742542 85742550 GTAATGAGA - PICALM In_Frame_Del p.L79_T81del 0.27 TCGA-A3-3373-01 12 14578241 14578241 T G ATF7IP Missense_Mutation p.N464K 0.34 tolerated_low_confidence(0.13) benign(0.003) TCGA-A3-3373-01 12 46328263 46328263 T C SCAF11 Silent p.G163G 0.24 TCGA-A3-3373-01 12 64536075 64536075 G C SRGAP1 Missense_Mutation p.D961H 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-A3-3373-01 12 93210026 93210026 T G EEA1 Missense_Mutation p.N627H 0.32 tolerated(0.05) benign(0.372) TCGA-A3-3373-01 13 29287320 29287320 G A SLC46A3 Missense_Mutation p.S186L 0.19 deleterious(0.02) benign(0.391) TCGA-A3-3373-01 14 104643367 104643367 G A KIF26A Silent p.R1414R 0.38 TCGA-A3-3373-01 14 106357576 106357576 C G IGHD6-19 Translation_Start_Site p.G1? 0.15 unknown(0) TCGA-A3-3373-01 14 31917639 31917639 T A DTD2 Missense_Mutation p.K68I 0.30 deleterious(0) probably_damaging(0.985) TCGA-A3-3373-01 14 59835514 59835514 A G DAAM1 Silent p.K1058K 0.24 TCGA-A3-3373-01 15 58471498 58471498 C T AQP9 Missense_Mutation p.P223S 0.26 deleterious(0.02) probably_damaging(1) TCGA-A3-3373-01 16 1793404 1793404 G A MAPK8IP3 Missense_Mutation p.G224D 0.26 tolerated(0.2) possibly_damaging(0.653) TCGA-A3-3373-01 16 28857318 28857318 G A TUFM Silent p.Y54Y 0.17 TCGA-A3-3373-01 16 31439650 31439650 G T COX6A2 5'UTR 0.24 TCGA-A3-3373-01 16 69200939 69200939 A T CIRH1A Intron 0.31 TCGA-A3-3373-01 17 38911098 38911113 ATTTTTAAGGTCATCA - KRT25 Frame_Shift_Del p.D138Rfs*40 0.20 TCGA-A3-3373-01 17 39658558 39658558 C - KRT13 Intron 0.35 TCGA-A3-3373-01 17 7214802 7214802 T C EIF5A Splice_Site p.X164_splice 0.28 TCGA-A3-3373-01 19 35862414 35862414 C T GPR42 Silent p.D51D 0.15 TCGA-A3-3373-01 19 4408962 4408962 G T CHAF1A Missense_Mutation p.D56Y 0.24 deleterious(0.03) probably_damaging(0.92) TCGA-A3-3373-01 19 50838347 50838347 C T NAPSB RNA 0.25 TCGA-A3-3373-01 19 51010902 51010902 G T JOSD2 Missense_Mutation p.N67K 0.31 deleterious(0) probably_damaging(0.999) TCGA-A3-3373-01 19 54625914 54625914 A C PRPF31 Silent p.R121R 0.27 TCGA-A3-3373-01 19 6190476 6190476 A G ACSBG2 Intron 0.35 TCGA-A3-3373-01 1 117564261 117564261 T C CD101 Missense_Mutation p.I695T 0.35 deleterious(0) possibly_damaging(0.862) TCGA-A3-3373-01 1 169762230 169762230 T G METTL18 Missense_Mutation p.I203L 0.30 deleterious(0.02) benign(0.099) TCGA-A3-3373-01 1 186344191 186344191 G - TPR 5'UTR 0.33 TCGA-A3-3373-01 1 212522528 212522528 T C PPP2R5A Intron 0.33 TCGA-A3-3373-01 1 212538685 212538685 G T TMEM206 Missense_Mutation p.L370I 0.26 tolerated(1) probably_damaging(0.998) TCGA-A3-3373-01 1 27660520 27660520 C - TMEM222 Frame_Shift_Del p.S129Lfs*24 0.25 TCGA-A3-3373-01 20 1532510 1532510 A G SIRPD Missense_Mutation p.F83S 0.21 tolerated(0.11) probably_damaging(1) TCGA-A3-3373-01 20 34242653 34242653 A G RBM12 Missense_Mutation p.S198P 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-A3-3373-01 20 42965937 42965937 T C R3HDML Missense_Mutation p.L47P 0.27 tolerated(0.17) benign(0.013) TCGA-A3-3373-01 20 46256718 46256718 A T NCOA3 Missense_Mutation p.R258S 0.23 deleterious(0) possibly_damaging(0.849) TCGA-A3-3373-01 2 10811743 10811743 G - NOL10 Frame_Shift_Del p.P134Qfs*28 0.27 TCGA-A3-3373-01 2 110065657 110065657 G A SH3RF3 Silent p.R620R 0.12 TCGA-A3-3373-01 2 128471543 128471543 C T WDR33 Silent p.R974R 0.04 TCGA-A3-3373-01 2 149227852 149227852 T G MBD5 Silent p.L780L 0.27 TCGA-A3-3373-01 2 166898839 166898839 T C SCN1A Silent p.A713A 0.20 TCGA-A3-3373-01 2 210561004 210561004 C T MAP2 Silent p.D1370D 0.21 TCGA-A3-3373-01 2 40342426 40342426 G A SLC8A1 Silent p.S963S 0.32 TCGA-A3-3373-01 2 63169917 63169917 G A EHBP1 Nonsense_Mutation p.W452* 0.31 TCGA-A3-3373-01 3 10183794 10183794 G A VHL Nonsense_Mutation p.W88* 0.48 TCGA-A3-3373-01 3 121647359 121647359 A C SLC15A2 Missense_Mutation p.N433T 0.23 tolerated(0.48) benign(0.007) TCGA-A3-3373-01 3 141697381 141697381 T G TFDP2 Missense_Mutation p.N167T 0.32 tolerated(0.06) benign(0.174) TCGA-A3-3373-01 3 194149610 194149610 T A ATP13A3 Missense_Mutation p.I971F 0.22 deleterious(0.05) benign(0.045) TCGA-A3-3373-01 3 42917124 42917124 G C CYP8B1 Missense_Mutation p.T62S 0.41 tolerated(0.26) benign(0.008) TCGA-A3-3373-01 3 48900024 48900024 C T SLC25A20 Silent p.E162E 0.38 TCGA-A3-3373-01 3 52682446 52682446 T A PBRM1 Nonsense_Mutation p.K243* 0.37 TCGA-A3-3373-01 3 56667576 56667576 C A FAM208A Missense_Mutation p.L1081F 0.34 tolerated(0.05) probably_damaging(0.976) TCGA-A3-3373-01 4 143348592 143348592 A C INPP4B Intron 0.13 TCGA-A3-3373-01 4 159750366 159750366 C G FNIP2 Missense_Mutation p.P124A 0.29 deleterious(0.05) possibly_damaging(0.486) TCGA-A3-3373-01 4 70066177 70066177 T G UGT2B11 Missense_Mutation p.K524T 0.27 deleterious(0.01) possibly_damaging(0.477) TCGA-A3-3373-01 4 8224578 8224578 C T SH3TC1 Missense_Mutation p.A375V 0.17 tolerated(1) benign(0.006) TCGA-A3-3373-01 5 17354457 17354457 T A CTD-2139B15.2 RNA 0.37 TCGA-A3-3373-01 5 33467768 33467768 G T TARS Missense_Mutation p.Q742H 0.30 tolerated(0.08) benign(0.009) TCGA-A3-3373-01 5 54965131 54965131 T G SLC38A9 Missense_Mutation p.M151L 0.29 tolerated(0.25) benign(0.002) TCGA-A3-3373-01 6 11005769 11005769 T G ELOVL2 Missense_Mutation p.M31L 0.35 tolerated(1) benign(0.002) TCGA-A3-3373-01 6 132270523 132270523 C T CTGF Missense_Mutation p.E311K 0.22 tolerated(0.39) benign(0.407) TCGA-A3-3373-01 6 144806603 144806603 A G UTRN Missense_Mutation p.K1257R 0.24 tolerated(0.15) benign(0.003) TCGA-A3-3373-01 6 97702455 97702455 C A MMS22L Missense_Mutation p.R366L 0.25 deleterious(0.02) probably_damaging(0.994) TCGA-A3-3373-01 7 75066894 75066894 A G POM121C Missense_Mutation p.S127P 0.27 deleterious(0) probably_damaging(0.939) TCGA-A3-3373-01 8 8749927 8749927 G C MFHAS1 Missense_Mutation p.N214K 0.43 deleterious(0.02) benign(0.045) TCGA-A3-3373-01 9 119460981 119460981 T C TRIM32 Silent p.V320V 0.24 TCGA-A3-3373-01 9 120476405 120476405 T A TLR4 Missense_Mutation p.Y667N 0.30 tolerated(0.18) possibly_damaging(0.781) TCGA-A3-3373-01 9 136642527 136642527 C T VAV2 Missense_Mutation p.C650Y 0.29 tolerated(0.36) benign(0.168) TCGA-A3-3373-01 9 32630069 32630069 G A TAF1L 3'UTR 0.23 TCGA-A3-3373-01 9 87285540 87285540 G A NTRK2 5'UTR 0.25 TCGA-A3-3373-01 X 32862975 32862975 T C DMD Silent p.P63P 0.29 TCGA-A3-3373-01 X 47074002 47074002 C T UBA1 Missense_Mutation p.P1003S 0.05 tolerated(0.11) benign(0.259) TCGA-A3-3373-01 X 96369939 96369939 G C DIAPH2 Missense_Mutation p.G855A 0.17 deleterious(0.01) probably_damaging(1) TCGA-A3-3374-01 10 106976771 106976771 C T SORCS3 Silent p.I875I 0.31 TCGA-A3-3374-01 10 14950897 14950897 G A DCLRE1C Missense_Mutation p.T530I 0.04 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-A3-3374-01 12 53232841 53232841 G A KRT78 3'UTR 0.10 TCGA-A3-3374-01 14 37194883 37194883 C G SLC25A21 Splice_Site p.X111_splice 0.09 TCGA-A3-3374-01 15 28230277 28230277 C T OCA2 Missense_Mutation p.A433T 0.07 tolerated(0.72) possibly_damaging(0.541) TCGA-A3-3374-01 15 62254983 62254984 - A VPS13C Frame_Shift_Ins p.V1134Cfs*5 0.15 TCGA-A3-3374-01 17 34861237 34861237 G T MYO19 Missense_Mutation p.L602M 0.11 deleterious(0) probably_damaging(1) TCGA-A3-3374-01 18 8825455 8825455 C A SOGA2 Missense_Mutation p.T1316K 0.15 deleterious(0) possibly_damaging(0.871) TCGA-A3-3374-01 19 45973842 45973845 TTTG - FOSB Intron 0.25 TCGA-A3-3374-01 19 53381424 53381424 G C ZNF320 3'UTR 0.11 TCGA-A3-3374-01 19 55106130 55106130 G A LILRA1 Missense_Mutation p.G24E 0.18 tolerated(0.08) benign(0.242) TCGA-A3-3374-01 1 201772738 201772738 C A NAV1 Missense_Mutation p.Q1179K 0.39 deleterious(0) probably_damaging(0.998) TCGA-A3-3374-01 1 223954130 223954130 A C CAPN2 Silent p.L584L 0.13 TCGA-A3-3374-01 2 11774455 11774455 C T GREB1 Silent p.N1730N 0.12 TCGA-A3-3374-01 2 131520926 131520926 C T AMER3 Silent p.H427H 0.37 TCGA-A3-3374-01 3 184953206 184953206 T C EHHADH Missense_Mutation p.T75A 0.04 tolerated(0.65) benign(0.005) TCGA-A3-3374-01 3 33195040 33195040 C A SUSD5 Missense_Mutation p.V362L 0.13 tolerated(0.25) benign(0.011) TCGA-A3-3374-01 3 51708285 51708285 A T TEX264 Splice_Site 0.21 TCGA-A3-3374-01 4 89334236 89334236 C T HERC6 Missense_Mutation p.T459M 0.02 deleterious(0.01) probably_damaging(0.939) TCGA-A3-3374-01 5 153190646 153190646 G A GRIA1 Missense_Mutation p.R871H 0.18 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-A3-3374-01 7 130008311 130008311 G A CPA5 Missense_Mutation p.S395N 0.23 deleterious(0) possibly_damaging(0.549) TCGA-A3-3374-01 8 108276471 108276471 T C ANGPT1 Silent p.K438K 0.24 TCGA-A3-3374-01 8 11412980 11412980 C A BLK Silent p.G253G 0.26 TCGA-A3-3374-01 8 125463612 125463612 C G TRMT12 Missense_Mutation p.F148L 0.03 tolerated(0.08) benign(0.4) TCGA-A3-3374-01 9 135158714 135158714 T C SETX Silent p.L2161L 0.22 TCGA-A3-3376-01 10 104489089 104489089 T C SFXN2 Missense_Mutation p.S149P 0.11 deleterious(0.03) possibly_damaging(0.653) TCGA-A3-3376-01 10 108366996 108366996 A G SORCS1 Silent p.T1031T 0.13 TCGA-A3-3376-01 10 12940511 12940511 G T CCDC3 Missense_Mutation p.L240M 0.21 tolerated_low_confidence(0.2) possibly_damaging(0.878) TCGA-A3-3376-01 11 20629130 20629130 T C SLC6A5 Missense_Mutation p.L306P 0.16 deleterious(0) probably_damaging(1) TCGA-A3-3376-01 11 48166241 48166241 G A PTPRJ Missense_Mutation p.A864T 0.10 tolerated(0.39) benign(0.022) TCGA-A3-3376-01 11 63342504 63342504 G C PLA2G16 Missense_Mutation p.I134M 0.07 tolerated(0.24) benign(0.002) TCGA-A3-3376-01 11 64695788 64695788 G A PPP2R5B Missense_Mutation p.E205K 0.18 deleterious(0) probably_damaging(0.984) TCGA-A3-3376-01 11 66114359 66114359 C T B3GNT1 Missense_Mutation p.A220T 0.05 tolerated(0.14) possibly_damaging(0.676) TCGA-A3-3376-01 11 95512032 95512032 C T FAM76B Missense_Mutation p.R261H 0.03 deleterious(0) possibly_damaging(0.897) TCGA-A3-3376-01 12 53512684 53512684 G T SOAT2 Missense_Mutation p.V292F 0.15 deleterious(0) possibly_damaging(0.529) TCGA-A3-3376-01 12 53512685 53512685 T G SOAT2 Missense_Mutation p.V292G 0.14 deleterious(0) benign(0.405) TCGA-A3-3376-01 12 9070228 9070228 C A PHC1 Intron 0.25 TCGA-A3-3376-01 13 115004884 115004884 T G CDC16 Missense_Mutation p.N100K 0.13 tolerated(0.33) benign(0.045) TCGA-A3-3376-01 13 39544522 39544522 G - STOML3 Frame_Shift_Del p.L106Sfs*6 0.16 TCGA-A3-3376-01 14 60928115 60928115 C T C14orf39 Silent p.Q358Q 0.09 TCGA-A3-3376-01 14 60928116 60928116 T C C14orf39 Missense_Mutation p.Q358R 0.09 tolerated(0.15) benign(0) TCGA-A3-3376-01 15 43317589 43317589 G C UBR1 Missense_Mutation p.N858K 0.16 tolerated(0.5) benign(0.001) TCGA-A3-3376-01 15 65983198 65983198 C G DENND4A Missense_Mutation p.R1244T 0.13 tolerated(0.62) benign(0.004) TCGA-A3-3376-01 16 15170407 15170407 C T RRN3 Intron 0.17 TCGA-A3-3376-01 16 50783997 50783997 C A CYLD Missense_Mutation p.P130T 0.17 tolerated(0.12) benign(0.049) TCGA-A3-3376-01 16 66966160 66966160 C T FAM96B Silent p.L146L 0.09 TCGA-A3-3376-01 17 73204674 73204674 C T NUP85 Missense_Mutation p.P29L 0.16 tolerated(0.17) benign(0.066) TCGA-A3-3376-01 17 73488654 73488654 T A KIAA0195 Missense_Mutation p.S566T 0.21 tolerated(0.98) benign(0.003) TCGA-A3-3376-01 18 39607334 39607334 A C PIK3C3 Intron 0.27 TCGA-A3-3376-01 19 50926246 50926246 C A SPIB Silent p.A97A 0.10 TCGA-A3-3376-01 1 100546150 100546150 A C HIAT1 Missense_Mutation p.K401Q 0.12 tolerated(0.09) benign(0.004) TCGA-A3-3376-01 1 110198849 110198849 A C GSTM4 5'UTR 0.12 TCGA-A3-3376-01 1 112019442 112019442 A C C1orf162 Silent p.T20T 0.18 TCGA-A3-3376-01 1 154178091 154178091 A G C1orf189 Silent p.L19L 0.05 TCGA-A3-3376-01 1 16257104 16257104 T G SPEN Missense_Mutation p.S1457A 0.04 probably_damaging(0.977) TCGA-A3-3376-01 1 17350478 17350478 A G SDHB Missense_Mutation p.V211A 0.13 tolerated(0.11) possibly_damaging(0.667) TCGA-A3-3376-01 1 178820398 178820398 A - ANGPTL1 Frame_Shift_Del p.S448Lfs*3 0.12 TCGA-A3-3376-01 1 205628720 205628720 G - SLC45A3 Frame_Shift_Del p.P435Lfs*107 0.17 TCGA-A3-3376-01 1 212981154 212981154 C - TATDN3 Frame_Shift_Del p.F189Sfs*8 0.19 TCGA-A3-3376-01 1 223568605 223568605 G T C1orf65 Missense_Mutation p.E596D 0.06 tolerated(1) benign(0.001) TCGA-A3-3376-01 1 228504428 228504428 T G OBSCN Missense_Mutation p.L5392R 0.17 probably_damaging(0.996) TCGA-A3-3376-01 1 38227126 38227126 G T EPHA10 Silent p.G267G 0.15 TCGA-A3-3376-01 1 47767917 47767917 G C STIL Missense_Mutation p.T85R 0.03 deleterious(0.03) possibly_damaging(0.713) TCGA-A3-3376-01 1 72400804 72400804 G T NEGR1 Missense_Mutation p.Q123K 0.09 tolerated(0.48) benign(0.051) TCGA-A3-3376-01 20 42680130 42680130 C T TOX2 Missense_Mutation p.A199V 0.14 deleterious(0.03) probably_damaging(0.991) TCGA-A3-3376-01 20 43850086 43850086 C T SEMG2 Missense_Mutation p.A19V 0.12 deleterious(0) probably_damaging(0.983) TCGA-A3-3376-01 20 62275107 62275107 G T STMN3 Splice_Site p.X97_splice 0.17 TCGA-A3-3376-01 21 38845082 38845082 A G DYRK1A Missense_Mutation p.H36R 0.10 deleterious_low_confidence(0) benign(0.263) TCGA-A3-3376-01 21 38862648 38862648 C G DYRK1A Missense_Mutation p.P279R 0.14 deleterious(0.02) possibly_damaging(0.561) TCGA-A3-3376-01 22 17073177 17073177 C G CCT8L2 Missense_Mutation p.W88C 0.19 tolerated(0.07) benign(0.008) TCGA-A3-3376-01 22 36960380 36960380 T C CACNG2 3'UTR 0.18 TCGA-A3-3376-01 2 149501326 149501326 G A EPC2 Missense_Mutation p.S150N 0.06 deleterious(0) probably_damaging(0.979) TCGA-A3-3376-01 2 173879257 173879257 G A RAPGEF4 Missense_Mutation p.R575K 0.17 tolerated(0.31) possibly_damaging(0.743) TCGA-A3-3376-01 2 99242002 99242002 G T MGAT4A 3'UTR 0.16 TCGA-A3-3376-01 3 10183872 10183872 G C VHL Splice_Site p.X114_splice 0.27 TCGA-A3-3376-01 3 189689771 189689771 G T LEPREL1 Silent p.L575L 0.15 TCGA-A3-3376-01 4 152025029 152025029 C T RPS3A Intron 0.11 TCGA-A3-3376-01 4 73941874 73941874 A G ANKRD17 3'UTR 0.22 TCGA-A3-3376-01 5 112870044 112870044 A G YTHDC2 Silent p.V295V 0.06 TCGA-A3-3376-01 5 67590479 67590479 G T PIK3R1 Missense_Mutation p.R514L 0.15 deleterious(0.02) possibly_damaging(0.623) TCGA-A3-3376-01 6 107088233 107088233 G A QRSL1 Missense_Mutation p.A12T 0.12 tolerated(0.22) benign(0.21) TCGA-A3-3376-01 6 31595623 31595623 T C PRRC2A Missense_Mutation p.S458P 0.10 unknown(0) TCGA-A3-3376-01 6 73100411 73100411 G A RIMS1 Missense_Mutation p.S1493N 0.04 deleterious(0) probably_damaging(0.989) TCGA-A3-3376-01 6 83823121 83823121 T C DOPEY1 Missense_Mutation p.F254S 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-A3-3376-01 6 93969181 93969181 G C EPHA7 Silent p.T605T 0.12 TCGA-A3-3376-01 7 100677022 100677022 C A MUC17 Missense_Mutation p.S775R 0.02 unknown(0) TCGA-A3-3376-01 7 104749515 104749515 T C KMT2E Missense_Mutation p.C1199R 0.18 deleterious_low_confidence(0.02) benign(0.088) TCGA-A3-3376-01 7 151873357 151873357 G T KMT2C Missense_Mutation p.Q3061K 0.19 probably_damaging(0.993) TCGA-A3-3376-01 7 5347894 5347894 A G TNRC18 Missense_Mutation p.V2917A 0.14 unknown(0) TCGA-A3-3376-01 7 92027912 92027912 C A ANKIB1 Silent p.I973I 0.17 TCGA-A3-3376-01 7 97822827 97822827 C G LMTK2 Missense_Mutation p.T1017S 0.14 tolerated(1) benign(0.002) TCGA-A3-3376-01 8 103663602 103663602 C T KLF10 Missense_Mutation p.V320M 0.12 deleterious(0) possibly_damaging(0.875) TCGA-A3-3376-01 8 38029515 38029515 A G LSM1 Missense_Mutation p.L28P 0.10 deleterious(0) probably_damaging(1) TCGA-A3-3376-01 8 86119690 86119690 C A E2F5 Missense_Mutation p.S194Y 0.27 deleterious(0.01) benign(0.147) TCGA-A3-3376-01 9 130868093 130868093 G A SLC25A25 Missense_Mutation p.R278Q 0.11 deleterious(0.01) possibly_damaging(0.562) TCGA-A3-3376-01 9 406989 406989 T A DOCK8 Silent p.T1150T 0.11 TCGA-A3-3376-01 9 99538291 99538291 C A ZNF510 Missense_Mutation p.A21S 0.26 tolerated(0.55) benign(0.026) TCGA-A3-3376-01 X 104464656 104464656 C T TEX13A Silent p.E142E 0.31 TCGA-A3-3378-01 10 133961472 133961472 C T JAKMIP3 Missense_Mutation p.T589M 0.13 tolerated(0.38) benign(0.01) TCGA-A3-3378-01 10 37520504 37520504 C A ANKRD30A 3'UTR 0.17 TCGA-A3-3378-01 10 71392632 71392632 G T C10orf35 Missense_Mutation p.Q61H 0.11 tolerated(0.54) benign(0.413) TCGA-A3-3378-01 10 91162071 91162071 T A IFIT1 Missense_Mutation p.S13R 0.18 tolerated(0.56) benign(0.008) TCGA-A3-3378-01 11 1087470 1087470 C A MUC2 Missense_Mutation p.A1074D 0.16 probably_damaging(0.996) TCGA-A3-3378-01 11 11470318 11470318 C A GALNT18 Missense_Mutation p.R134L 0.22 deleterious(0) probably_damaging(0.995) TCGA-A3-3378-01 11 18736130 18736130 C T IGSF22 Missense_Mutation p.A525T 0.24 deleterious(0.02) probably_damaging(0.964) TCGA-A3-3378-01 11 57077445 57077445 G A TNKS1BP1 Missense_Mutation p.H914Y 0.19 tolerated(1) benign(0.245) TCGA-A3-3378-01 11 57373959 57373959 C G SERPING1 Missense_Mutation p.P323R 0.18 tolerated(0.07) probably_damaging(0.919) TCGA-A3-3378-01 11 62760819 62760819 A G SLC22A8 Intron 0.20 TCGA-A3-3378-01 11 803579 803579 G A PIDD Missense_Mutation p.R102C 0.14 tolerated(0.19) benign(0.003) TCGA-A3-3378-01 12 111290728 111290728 C A CCDC63 5'UTR 0.19 TCGA-A3-3378-01 12 48442848 48442848 G A SENP1 Missense_Mutation p.A492V 0.22 tolerated(0.1) probably_damaging(0.997) TCGA-A3-3378-01 12 52793886 52793886 C T KRT82 Silent p.V275V 0.19 TCGA-A3-3378-01 12 57437906 57437906 C T MYO1A Missense_Mutation p.S243N 0.18 tolerated(1) benign(0.001) TCGA-A3-3378-01 12 85546098 85546098 G A LRRIQ1 Missense_Mutation p.R1457H 0.11 tolerated(0.11) probably_damaging(0.935) TCGA-A3-3378-01 13 29608253 29608253 G T MTUS2 Missense_Mutation p.D823Y 0.17 deleterious(0) probably_damaging(0.984) TCGA-A3-3378-01 13 33332255 33332255 G C PDS5B Missense_Mutation p.M1029I 0.27 tolerated(0.4) benign(0.025) TCGA-A3-3378-01 14 64988623 64988623 A T ZBTB1 Missense_Mutation p.Q134L 0.19 tolerated(0.77) benign(0.022) TCGA-A3-3378-01 15 51758414 51758414 T C DMXL2 Missense_Mutation p.Q2496R 0.15 tolerated(0.12) benign(0.007) TCGA-A3-3378-01 15 75013623 75013623 G C CYP1A1 Missense_Mutation p.D361E 0.13 deleterious(0) possibly_damaging(0.856) TCGA-A3-3378-01 15 78572439 78572439 C G DNAJA4 Silent p.P339P 0.16 TCGA-A3-3378-01 15 90039695 90039695 C T RHCG Silent p.G27G 0.12 TCGA-A3-3378-01 16 2288520 2288520 A G DNASE1L2 3'UTR 0.19 TCGA-A3-3378-01 17 58282987 58282987 A C USP32 Missense_Mutation p.F1024V 0.14 tolerated(0.57) benign(0.016) TCGA-A3-3378-01 17 7417116 7417116 T C POLR2A Missense_Mutation p.S1845P 0.21 possibly_damaging(0.472) TCGA-A3-3378-01 17 7630455 7630455 T C DNAH2 Missense_Mutation p.S82P 0.25 benign(0.079) TCGA-A3-3378-01 19 45857991 45857991 C T ERCC2 Silent p.E554E 0.15 TCGA-A3-3378-01 19 57839655 57839655 G A ZNF543 Silent p.R275R 0.16 TCGA-A3-3378-01 19 8429515 8429515 A T ANGPTL4 Missense_Mutation p.S104C 0.19 tolerated(0.11) possibly_damaging(0.784) TCGA-A3-3378-01 19 8997497 8997497 G C MUC16 Missense_Mutation p.T13642S 0.20 probably_damaging(0.997) TCGA-A3-3378-01 1 146696569 146696569 G A FMO5 Missense_Mutation p.S18F 0.19 deleterious(0) possibly_damaging(0.866) TCGA-A3-3378-01 1 153177408 153177408 C A LELP1 Silent p.T75T 0.22 TCGA-A3-3378-01 1 154744736 154744736 G A KCNN3 Missense_Mutation p.A388V 0.24 tolerated(0.1) possibly_damaging(0.54) TCGA-A3-3378-01 1 171244561 171244561 A C FMO1 Missense_Mutation p.E133A 0.16 deleterious(0.02) benign(0.021) TCGA-A3-3378-01 1 176993851 176993851 G A ASTN1 Missense_Mutation p.P380S 0.23 deleterious(0) probably_damaging(0.999) TCGA-A3-3378-01 1 17725285 17725286 AC - PADI6 RNA 0.21 TCGA-A3-3378-01 1 186415580 186415580 G A PDC Missense_Mutation p.S64L 0.20 tolerated(0.32) benign(0.002) TCGA-A3-3378-01 1 55622657 55622657 C T USP24 Silent p.L470L 0.13 TCGA-A3-3378-01 1 85648743 85648743 T C SYDE2 Missense_Mutation p.K528E 0.17 deleterious(0) probably_damaging(0.999) TCGA-A3-3378-01 20 43835668 43835668 G A SEMG1 5'UTR 0.23 TCGA-A3-3378-01 20 43835669 43835669 C G SEMG1 5'UTR 0.24 TCGA-A3-3378-01 20 44402954 44402954 G C WFDC3 3'UTR 0.14 TCGA-A3-3378-01 21 30442608 30442608 C T CCT8 Silent p.K37K 0.15 TCGA-A3-3378-01 22 41566499 41566499 A T EP300 Missense_Mutation p.K1459M 0.19 probably_damaging(1) TCGA-A3-3378-01 2 1677555 1677555 C T PXDN Missense_Mutation p.R293H 0.21 deleterious(0) probably_damaging(0.982) TCGA-A3-3378-01 2 175612767 175612767 T A CHRNA1 3'UTR 0.17 TCGA-A3-3378-01 2 183731161 183731161 G T FRZB Silent p.I40I 0.20 TCGA-A3-3378-01 2 200213434 200213434 T C SATB2 Missense_Mutation p.N388S 0.21 deleterious(0.03) probably_damaging(0.983) TCGA-A3-3378-01 2 200826508 200826508 G C C2orf47 Missense_Mutation p.R218S 0.20 deleterious(0.01) probably_damaging(0.933) TCGA-A3-3378-01 2 54483389 54483389 C T TSPYL6 5'UTR 0.06 TCGA-A3-3378-01 2 68361814 68361814 G C WDR92 Intron 0.25 TCGA-A3-3378-01 2 80097056 80097056 C T CTNNA2 Nonsense_Mutation p.Q194* 0.14 TCGA-A3-3378-01 3 197238941 197238941 G A BDH1 Missense_Mutation p.T286I 0.18 tolerated(0.07) benign(0.157) TCGA-A3-3378-01 3 33887039 33887039 A T PDCD6IP Missense_Mutation p.I539F 0.22 deleterious(0) possibly_damaging(0.848) TCGA-A3-3378-01 3 44488853 44488853 G A ZNF445 Silent p.A770A 0.23 TCGA-A3-3378-01 3 52677285 52677285 T - PBRM1 Frame_Shift_Del p.N325Ifs*37 0.22 TCGA-A3-3378-01 3 69928509 69928509 C T MITF Missense_Mutation p.T110M 0.27 tolerated(0.22) benign(0.091) TCGA-A3-3378-01 4 119239601 119239601 T - PRSS12 Frame_Shift_Del p.K361Rfs*22 0.19 TCGA-A3-3378-01 4 151511932 151511932 C A LRBA Missense_Mutation p.E2053D 0.27 tolerated(0.13) possibly_damaging(0.905) TCGA-A3-3378-01 4 22437012 22437012 A T GPR125 Silent p.S455S 0.17 TCGA-A3-3378-01 4 25258214 25258214 C T PI4K2B Missense_Mutation p.A225V 0.23 tolerated(0.18) possibly_damaging(0.534) TCGA-A3-3378-01 4 81952663 81952663 A T BMP3 Silent p.T75T 0.17 TCGA-A3-3378-01 5 100147426 100147426 C A ST8SIA4 3'UTR 0.32 TCGA-A3-3378-01 5 14751238 14751238 G A ANKH Silent p.C209C 0.13 TCGA-A3-3378-01 5 176827583 176827583 T C PFN3 5'UTR 0.16 TCGA-A3-3378-01 5 24593660 24593660 G C CDH10 5'UTR 0.15 TCGA-A3-3378-01 5 64867889 64867889 T C PPWD1 Missense_Mutation p.Y249H 0.25 deleterious(0) probably_damaging(0.968) TCGA-A3-3378-01 6 161152232 161152232 T C PLG Missense_Mutation p.L469P 0.21 tolerated(0.41) benign(0) TCGA-A3-3378-01 6 29079901 29079901 C G OR2J3 Silent p.T78T 0.15 TCGA-A3-3378-01 6 3850568 3850568 G T FAM50B Missense_Mutation p.A175S 0.15 tolerated(0.62) benign(0.117) TCGA-A3-3378-01 6 51524031 51524031 A G PKHD1 Silent p.Y3631Y 0.21 TCGA-A3-3378-01 7 100401094 100401094 G C EPHB4 Missense_Mutation p.P985A 0.29 tolerated_low_confidence(0.07) possibly_damaging(0.811) TCGA-A3-3378-01 7 139281488 139281488 C T HIPK2 Missense_Mutation p.E898K 0.22 deleterious(0.01) benign(0.071) TCGA-A3-3378-01 7 150034457 150034457 T A LRRC61 Silent p.G169G 0.27 TCGA-A3-3378-01 7 17836399 17836399 C G SNX13 Intron 0.24 TCGA-A3-3378-01 7 64166913 64166913 G C ZNF107 Missense_Mutation p.Q77H 0.23 deleterious(0.02) benign(0.092) TCGA-A3-3378-01 7 82595363 82595363 C G PCLO Missense_Mutation p.K1247N 0.02 unknown(0) TCGA-A3-3378-01 8 42317465 42317465 C T SLC20A2 Missense_Mutation p.A188T 0.13 deleterious(0) possibly_damaging(0.908) TCGA-A3-3378-01 8 75737252 75737252 G T PI15 Intron 0.17 TCGA-A3-3378-01 9 116303802 116303802 A T RGS3 Intron 0.21 TCGA-A3-3378-01 9 119204736 119204736 T C ASTN2 Silent p.A1147A 0.18 TCGA-A3-3378-01 9 130211560 130211571 TGTTTTTCTGTT - RPL12 In_Frame_Del p.K94_N97del 0.19 TCGA-A3-3378-01 X 26212326 26212326 C G MAGEB6 Silent p.G121G 0.45 TCGA-A3-3378-01 X 47836772 47836772 T C ZNF182 Silent p.A238A 0.35 TCGA-A3-3380-01 10 118969176 118969176 G A KCNK18 Missense_Mutation p.R174H 0.13 tolerated(0.19) benign(0) TCGA-A3-3380-01 11 49974717 49974717 C T OR4C13 Missense_Mutation p.S248F 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-A3-3380-01 11 64571721 64571721 G A MEN1 3'UTR 0.29 TCGA-A3-3380-01 11 73584444 73584447 AGAA - COA4 Intron 0.39 TCGA-A3-3380-01 11 73850649 73850649 C T C2CD3 Splice_Site p.X236_splice 0.30 TCGA-A3-3380-01 12 13769424 13769424 C A GRIN2B Missense_Mutation p.R431S 0.36 deleterious(0.04) probably_damaging(0.973) TCGA-A3-3380-01 12 7087581 7087581 A G LPCAT3 Missense_Mutation p.V321A 0.27 tolerated(0.11) possibly_damaging(0.84) TCGA-A3-3380-01 12 7288076 7288076 G T CLSTN3 Missense_Mutation p.Q179H 0.34 deleterious(0) probably_damaging(0.978) TCGA-A3-3380-01 12 7288077 7288077 A G CLSTN3 Missense_Mutation p.I180V 0.34 tolerated(0.08) possibly_damaging(0.616) TCGA-A3-3380-01 13 50594550 50594550 A G KCNRG Missense_Mutation p.E260G 0.30 deleterious(0.02) benign(0.002) TCGA-A3-3380-01 14 22102295 22102295 G C OR10G2 Missense_Mutation p.T235S 0.33 tolerated(1) possibly_damaging(0.803) TCGA-A3-3380-01 15 78588078 78588078 A G WDR61 Intron 0.33 TCGA-A3-3380-01 16 2168149 2168149 C G PKD1 Missense_Mutation p.G282R 0.16 benign(0.09) TCGA-A3-3380-01 16 3641179 3641179 C A SLX4 Missense_Mutation p.R820S 0.24 deleterious(0) possibly_damaging(0.907) TCGA-A3-3380-01 16 89167563 89167563 G A ACSF3 Silent p.P158P 0.26 TCGA-A3-3380-01 17 40049295 40049295 T G ACLY Missense_Mutation p.Y531S 0.27 deleterious(0.04) probably_damaging(0.927) TCGA-A3-3380-01 17 49098649 49098649 T C SPAG9 Silent p.T287T 0.33 TCGA-A3-3380-01 18 72201786 72201786 G A CNDP1 5'UTR 0.43 TCGA-A3-3380-01 19 15537959 15537959 C A WIZ Missense_Mutation p.K305N 0.15 deleterious(0) probably_damaging(1) TCGA-A3-3380-01 19 52658790 52658790 G C ZNF836 Missense_Mutation p.P716A 0.30 deleterious(0) probably_damaging(0.989) TCGA-A3-3380-01 1 156767110 156767110 C A PRCC Missense_Mutation p.Q456K 0.15 deleterious(0) probably_damaging(0.998) TCGA-A3-3380-01 22 41832382 41832382 A G TOB2 Missense_Mutation p.L323P 0.30 deleterious(0) probably_damaging(0.999) TCGA-A3-3380-01 22 50893343 50893343 C T SBF1 Missense_Mutation p.R1571K 0.29 tolerated(0.51) benign(0.001) TCGA-A3-3380-01 2 209104723 209104723 A C IDH1 Nonsense_Mutation p.Y285* 0.29 TCGA-A3-3380-01 2 211018808 211018808 G T KANSL1L Missense_Mutation p.Q167K 0.25 tolerated(0.14) benign(0.287) TCGA-A3-3380-01 2 68882419 68882419 C T PROKR1 Missense_Mutation p.A298V 0.33 deleterious(0.03) benign(0.103) TCGA-A3-3380-01 2 74745642 74745642 C T DQX1 Missense_Mutation p.M695I 0.24 tolerated(0.14) benign(0.013) TCGA-A3-3380-01 3 10183851 10183851 G C VHL Missense_Mutation p.R107P 0.41 deleterious(0.03) probably_damaging(0.942) TCGA-A3-3380-01 4 4322531 4322531 C A ZBTB49 Missense_Mutation p.L596M 0.34 tolerated(0.17) possibly_damaging(0.553) TCGA-A3-3380-01 5 140725628 140725628 C G PCDHGA3 Silent p.G676G 0.11 TCGA-A3-3380-01 5 5462929 5462929 T G KIAA0947 Missense_Mutation p.I1161R 0.30 deleterious(0) possibly_damaging(0.898) TCGA-A3-3380-01 6 71665632 71665632 C T B3GAT2 Silent p.L167L 0.65 TCGA-A3-3380-01 7 2552830 2552830 G A LFNG Silent p.R29R 0.24 TCGA-A3-3380-01 7 77256343 77256343 T - PTPN12 Frame_Shift_Del p.F450Lfs*7 0.24 TCGA-A3-3380-01 7 82583288 82583288 C A PCLO Missense_Mutation p.E2327D 0.30 unknown(0) TCGA-A3-3380-01 8 11703250 11703250 C T CTSB Missense_Mutation p.R281H 0.25 deleterious(0) probably_damaging(0.999) TCGA-A3-3380-01 8 57080032 57080032 G T PLAG1 Silent p.T91T 0.22 TCGA-A3-3380-01 X 153008982 153008982 C T ABCD1 Silent p.G677G 0.40 TCGA-A3-3380-01 X 2867501 2867501 G A ARSE Missense_Mutation p.S233L 0.05 tolerated(1) benign(0.002) TCGA-A3-3382-01 10 112335137 112335137 A G SMC3 Silent p.P58P 0.39 TCGA-A3-3382-01 10 118434631 118434631 C G HSPA12A Missense_Mutation p.W563C 0.47 deleterious(0) probably_damaging(0.973) TCGA-A3-3382-01 10 52580311 52580311 C - A1CF Splice_Site p.X297_splice 0.25 TCGA-A3-3382-01 10 76748798 76748798 T A KAT6B Missense_Mutation p.Y853N 0.25 possibly_damaging(0.881) TCGA-A3-3382-01 11 118948939 118948939 C T VPS11 Silent p.A605A 0.24 TCGA-A3-3382-01 11 123848361 123848361 G T OR10S1 Missense_Mutation p.T13K 0.24 tolerated(0.81) benign(0) TCGA-A3-3382-01 11 13375946 13375946 A G ARNTL Missense_Mutation p.S31G 0.13 tolerated(0.34) benign(0.001) TCGA-A3-3382-01 11 19247052 19247052 C T E2F8 Missense_Mutation p.G713R 0.21 tolerated(0.36) possibly_damaging(0.844) TCGA-A3-3382-01 11 30953424 30953424 C A DCDC1 Nonsense_Mutation p.E931* 0.42 TCGA-A3-3382-01 11 499015 499015 T C RNH1 Missense_Mutation p.K205R 0.47 tolerated(0.73) benign(0.018) TCGA-A3-3382-01 11 65270349 65270349 T C MALAT1 RNA 0.36 TCGA-A3-3382-01 11 76371567 76371567 C T LRRC32 Missense_Mutation p.R357Q 0.14 tolerated(0.67) benign(0.002) TCGA-A3-3382-01 11 8704257 8704257 A G RPL27A 5'UTR 0.21 TCGA-A3-3382-01 11 89424222 89424223 - T FOLH1B RNA 0.19 TCGA-A3-3382-01 12 14924038 14924038 C T HIST4H4 5'UTR 0.31 TCGA-A3-3382-01 12 53689313 53689313 G A PFDN5 5'UTR 0.21 TCGA-A3-3382-01 12 56363264 56363267 GACC CA CDK2 Frame_Shift_Del p.L166Vfs*6 0.41 TCGA-A3-3382-01 12 6457292 6457292 C T SCNN1A Missense_Mutation p.R645Q 0.21 tolerated(0.17) possibly_damaging(0.586) TCGA-A3-3382-01 12 69965989 69965989 T - FRS2 Frame_Shift_Del p.S169Lfs*10 0.41 TCGA-A3-3382-01 12 8758017 8758017 C T AICDA Missense_Mutation p.R74H 0.42 tolerated(0.21) benign(0.027) TCGA-A3-3382-01 12 91366748 91366748 G C EPYC Missense_Mutation p.T117S 0.40 tolerated(0.29) benign(0.303) TCGA-A3-3382-01 12 94772668 94772668 A T CCDC41 Missense_Mutation p.L234I 0.36 tolerated(0.19) probably_damaging(0.998) TCGA-A3-3382-01 14 45431527 45431527 C T FAM179B 5'UTR 0.68 TCGA-A3-3382-01 14 94844682 94844682 G A SERPINA1 3'UTR 0.33 TCGA-A3-3382-01 15 45361216 45361216 C T SORD Missense_Mutation p.T251M 0.29 deleterious(0) probably_damaging(0.947) TCGA-A3-3382-01 15 51791649 51791649 C G DMXL2 Missense_Mutation p.G1258R 0.62 deleterious(0) probably_damaging(1) TCGA-A3-3382-01 15 59499176 59499176 A T LDHAL6B Nonsense_Mutation p.R13* 0.61 TCGA-A3-3382-01 15 79058756 79058756 G C ADAMTS7 Missense_Mutation p.A1166G 0.18 deleterious(0.04) benign(0.031) TCGA-A3-3382-01 16 21123085 21123085 G T DNAH3 Missense_Mutation p.S654Y 0.30 tolerated(0.88) benign(0.015) TCGA-A3-3382-01 16 4787820 4787820 A C C16orf71 Missense_Mutation p.E50A 0.17 deleterious(0) probably_damaging(0.981) TCGA-A3-3382-01 17 17927959 17927961 ATT - ATPAF2 In_Frame_Del p.I162del 0.24 TCGA-A3-3382-01 17 19250621 19250621 A C B9D1 Missense_Mutation p.F122C 0.24 deleterious(0) probably_damaging(0.994) TCGA-A3-3382-01 17 27250942 27250942 T C PHF12 Missense_Mutation p.T234A 0.49 deleterious(0.01) possibly_damaging(0.514) TCGA-A3-3382-01 17 29556075 29556075 G A NF1 Silent p.K814K 0.21 TCGA-A3-3382-01 17 29687570 29687570 C G NF1 Nonsense_Mutation p.Y2742* 0.37 TCGA-A3-3382-01 17 45234696 45234696 C A CDC27 Missense_Mutation p.S177I 0.05 tolerated(0.07) benign(0.149) TCGA-A3-3382-01 17 48562232 48562232 T A RSAD1 3'UTR 0.57 TCGA-A3-3382-01 17 7291835 7291835 G T TNK1 Missense_Mutation p.G535C 0.25 tolerated(0.05) possibly_damaging(0.625) TCGA-A3-3382-01 17 73913852 73913852 C T FBF1 Missense_Mutation p.M807I 0.38 deleterious(0) benign(0.215) TCGA-A3-3382-01 18 76752151 76752151 G A SALL3 Missense_Mutation p.E54K 0.28 tolerated(0.25) unknown(0) TCGA-A3-3382-01 19 53644453 53644453 C A ZNF347 Missense_Mutation p.C544F 0.37 deleterious(0.02) probably_damaging(0.995) TCGA-A3-3382-01 19 54177507 54177508 TA - MIR498 RNA 0.17 TCGA-A3-3382-01 19 7977212 7977212 C A MAP2K7 Missense_Mutation p.L386M 0.37 tolerated(0.11) benign(0.045) TCGA-A3-3382-01 1 11249984 11249984 A - ANGPTL7 Frame_Shift_Del p.A117Hfs*105 0.20 TCGA-A3-3382-01 1 114252891 114252891 C A PHTF1 Missense_Mutation p.E418D 0.46 tolerated(0.89) benign(0.026) TCGA-A3-3382-01 1 116932982 116932982 A G ATP1A1 Missense_Mutation p.M391V 0.28 tolerated(0.12) benign(0.058) TCGA-A3-3382-01 1 12785730 12785730 G C AADACL3 Missense_Mutation p.D274H 0.21 deleterious(0.03) benign(0.086) TCGA-A3-3382-01 1 12954436 12954436 G A PRAMEF10 Missense_Mutation p.H283Y 0.45 tolerated(0.49) benign(0.25) TCGA-A3-3382-01 1 144857634 144857634 C T PDE4DIP Silent p.T2140T 0.18 TCGA-A3-3382-01 1 150476838 150476838 G A TARS2 Missense_Mutation p.G549S 0.15 deleterious(0.02) benign(0.252) TCGA-A3-3382-01 1 157545298 157545298 G A FCRL4 3'UTR 0.11 TCGA-A3-3382-01 1 206325277 206325277 A T CTSE Missense_Mutation p.S168C 0.10 deleterious(0) probably_damaging(0.999) TCGA-A3-3382-01 1 216380760 216380760 T G USH2A Missense_Mutation p.Q1057H 0.25 probably_damaging(0.999) TCGA-A3-3382-01 1 248112339 248112339 C G OR2L8 Missense_Mutation p.F60L 0.28 tolerated(0.1) benign(0.039) TCGA-A3-3382-01 1 248458502 248458502 G C OR2T12 Missense_Mutation p.P127A 0.15 deleterious(0) probably_damaging(0.987) TCGA-A3-3382-01 1 248813490 248813490 C T OR2T27 Silent p.E232E 0.30 TCGA-A3-3382-01 1 25573155 25573160 GAACCC - C1orf63 In_Frame_Del p.G99_F100del 0.39 TCGA-A3-3382-01 1 27621085 27621085 G C WDTC1 Missense_Mutation p.G280R 0.27 deleterious(0) probably_damaging(1) TCGA-A3-3382-01 1 33147502 33147502 G C RBBP4 3'UTR 0.49 TCGA-A3-3382-01 1 34666597 34666597 C T C1orf94 Nonsense_Mutation p.R412* 0.13 TCGA-A3-3382-01 1 46180107 46180115 ATTGCTGAT - IPP In_Frame_Del p.I445_N447del 0.39 TCGA-A3-3382-01 1 6170533 6170533 A T CHD5 Missense_Mutation p.L1768H 0.21 deleterious(0.01) probably_damaging(0.928) TCGA-A3-3382-01 1 78478852 78478852 T C DNAJB4 Missense_Mutation p.I110T 0.26 tolerated(0.58) benign(0.002) TCGA-A3-3382-01 1 8926510 8926510 C A ENO1 Missense_Mutation p.M165I 0.22 deleterious_low_confidence(0.04) benign(0.245) TCGA-A3-3382-01 1 91818686 91818686 A G HFM1 Missense_Mutation p.Y585H 0.19 deleterious(0) probably_damaging(0.991) TCGA-A3-3382-01 20 16359478 16359478 G C KIF16B Missense_Mutation p.Q1057E 0.38 tolerated_low_confidence(0.07) benign(0.209) TCGA-A3-3382-01 20 2448399 2448399 C A SNRPB Silent p.V3V 0.37 TCGA-A3-3382-01 20 3845153 3845153 C T MAVS Silent p.N292N 0.35 TCGA-A3-3382-01 20 44531163 44531163 G T PLTP Silent p.G341G 0.17 TCGA-A3-3382-01 20 57599336 57599336 C T TUBB1 Missense_Mutation p.S285F 0.34 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-A3-3382-01 20 62705068 62705068 C T RGS19 3'UTR 0.50 TCGA-A3-3382-01 2 166611170 166611170 A T GALNT3 Silent p.I531I 0.35 TCGA-A3-3382-01 2 169622847 169622847 C T CERS6 Missense_Mutation p.P340S 0.31 tolerated_low_confidence(0.21) probably_damaging(0.994) TCGA-A3-3382-01 2 179600277 179600277 C T TTN Missense_Mutation p.A4966T 0.28 TCGA-A3-3382-01 2 189458666 189458666 G A GULP1 Splice_Site p.X282_splice 0.35 TCGA-A3-3382-01 2 191301590 191301590 T C MFSD6 Missense_Mutation p.Y279H 0.38 deleterious(0) probably_damaging(0.984) TCGA-A3-3382-01 2 197953472 197953473 - T ANKRD44 Frame_Shift_Ins p.F379Ifs*14 0.31 TCGA-A3-3382-01 2 202060612 202060612 C A CASP10 Missense_Mutation p.Q209K 0.35 tolerated(0.41) benign(0.097) TCGA-A3-3382-01 2 215868936 215868936 G T ABCA12 Missense_Mutation p.L894I 0.29 deleterious(0.04) probably_damaging(0.983) TCGA-A3-3382-01 2 241974046 241974046 A G SNED1 Missense_Mutation p.D235G 0.22 tolerated(0.09) benign(0.075) TCGA-A3-3382-01 2 24929598 24929598 G A NCOA1 Missense_Mutation p.R420H 0.17 tolerated(0.59) benign(0.001) TCGA-A3-3382-01 2 26703722 26703722 C G OTOF Missense_Mutation p.D579H 0.38 deleterious(0) probably_damaging(0.977) TCGA-A3-3382-01 2 31484438 31484438 T C EHD3 Silent p.S313S 0.40 TCGA-A3-3382-01 2 95497757 95497757 C G ANKRD20A8P RNA 0.18 TCGA-A3-3382-01 2 96861119 96861119 C T STARD7 Nonsense_Mutation p.W153* 0.20 TCGA-A3-3382-01 3 10188200 10188200 C A VHL Missense_Mutation p.H115N 0.60 deleterious(0) probably_damaging(0.993) TCGA-A3-3382-01 3 11078671 11078671 A C SLC6A1 3'UTR 0.45 TCGA-A3-3382-01 3 167750471 167750471 T G GOLIM4 Missense_Mutation p.E338A 0.50 deleterious(0) probably_damaging(0.999) TCGA-A3-3382-01 3 38797338 38797338 C A SCN10A Nonsense_Mutation p.E468* 0.31 TCGA-A3-3382-01 3 48019414 48019414 G A MAP4 Missense_Mutation p.S78F 0.67 deleterious(0) probably_damaging(0.957) TCGA-A3-3382-01 3 49847308 49847308 G T UBA7 Missense_Mutation p.A615D 0.62 deleterious(0) probably_damaging(0.999) TCGA-A3-3382-01 3 52662912 52662912 G A PBRM1 Nonsense_Mutation p.Q481* 0.64 TCGA-A3-3382-01 4 3117148 3117160 AGTTGGCTACTAA - HTT Frame_Shift_Del p.S289Mfs*4 0.35 TCGA-A3-3382-01 4 85731357 85731357 C G WDFY3 Silent p.V676V 0.36 TCGA-A3-3382-01 5 131598428 131598428 G T PDLIM4 Missense_Mutation p.D74Y 0.09 tolerated(0.11) probably_damaging(0.993) TCGA-A3-3382-01 5 135692925 135692925 C T TRPC7 Missense_Mutation p.A51T 0.46 deleterious(0) possibly_damaging(0.831) TCGA-A3-3382-01 5 149749096 149749096 G T TCOF1 Missense_Mutation p.M190I 0.15 tolerated(0.07) benign(0.035) TCGA-A3-3382-01 5 156746796 156746796 G A CYFIP2 Silent p.Q435Q 0.35 TCGA-A3-3382-01 5 172341926 172341926 T A ERGIC1 Intron 0.71 TCGA-A3-3382-01 5 175306865 175306865 G T CPLX2 Missense_Mutation p.K74N 0.47 deleterious(0.01) probably_damaging(0.937) TCGA-A3-3382-01 5 35700726 35700726 A - SPEF2 Frame_Shift_Del p.K758Nfs*27 0.30 TCGA-A3-3382-01 5 74889874 74889874 G A POLK Missense_Mutation p.G510S 0.43 deleterious(0) probably_damaging(1) TCGA-A3-3382-01 6 116979974 116979974 T C ZUFSP Missense_Mutation p.K262E 0.22 deleterious(0.01) benign(0.037) TCGA-A3-3382-01 6 144780343 144780343 A G UTRN Missense_Mutation p.K854E 0.25 tolerated(0.11) benign(0.027) TCGA-A3-3382-01 6 31804867 31804867 C T C6orf48 Intron 0.29 TCGA-A3-3382-01 6 44218220 44218220 G A HSP90AB1 Missense_Mutation p.E281K 0.34 tolerated(0.06) benign(0.031) TCGA-A3-3382-01 6 57013213 57013213 A C ZNF451 Missense_Mutation p.K777T 0.27 tolerated(0.48) benign(0.013) TCGA-A3-3382-01 6 8015841 8015841 A C BLOC1S5 3'UTR 0.26 TCGA-A3-3382-01 6 87970890 87970890 C T ZNF292 Nonsense_Mutation p.Q2515* 0.28 TCGA-A3-3382-01 7 107329537 107329537 G A SLC26A4 Silent p.S347S 0.13 TCGA-A3-3382-01 7 2274853 2274853 T A FTSJ2 Silent p.V215V 0.36 TCGA-A3-3382-01 7 31142950 31142959 CGTGTTTGAG - ADCYAP1R1 Frame_Shift_Del p.V411Wfs*18 0.36 TCGA-A3-3382-01 7 4796681 4796681 C G FOXK1 Silent p.S369S 0.17 TCGA-A3-3382-01 7 5024680 5024680 A - RBAK-RBAKDN 5'UTR 0.21 TCGA-A3-3382-01 7 5270558 5270558 A G WIPI2 Missense_Mutation p.M449V 0.37 tolerated(0.93) benign(0.014) TCGA-A3-3382-01 7 8126006 8126006 T G GLCCI1 Silent p.V494V 0.35 TCGA-A3-3382-01 8 72756043 72756043 C G MSC Missense_Mutation p.S124T 0.76 deleterious(0) probably_damaging(0.996) TCGA-A3-3382-01 9 125936121 125936121 C A STRBP Missense_Mutation p.K75N 0.54 tolerated(0.09) benign(0.007) TCGA-A3-3382-01 9 132897301 132897301 C T GPR107 Intron 0.42 TCGA-A3-3382-01 9 138586216 138586216 C A SOHLH1 Intron 0.57 TCGA-A3-3382-01 9 138586217 138586217 C T SOHLH1 Intron 0.58 TCGA-A3-3382-01 9 139916407 139916407 G C ABCA2 Missense_Mutation p.S205C 0.56 deleterious_low_confidence(0.03) benign(0.443) TCGA-A3-3382-01 9 19032912 19032912 C T FAM154A 5'UTR 0.38 TCGA-A3-3382-01 9 34521629 34521629 A C ENHO Missense_Mutation p.L22W 0.62 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-A3-3382-01 X 31241191 31241191 G T DMD Missense_Mutation p.L3112I 0.36 possibly_damaging(0.581) TCGA-A3-3383-01 10 117228696 117228696 G T ATRNL1 Missense_Mutation p.G1171W 0.07 tolerated(0.06) probably_damaging(1) TCGA-A3-3383-01 10 25887796 25887796 A C GPR158 Missense_Mutation p.I1081L 0.31 tolerated(0.59) benign(0.001) TCGA-A3-3383-01 10 62670706 62670706 A T RHOBTB1 Missense_Mutation p.S79T 0.31 deleterious(0) probably_damaging(0.998) TCGA-A3-3383-01 10 74100574 74100574 C T DNAJB12 Silent p.R266R 0.33 TCGA-A3-3383-01 10 8006092 8006092 G T TAF3 Missense_Mutation p.V207F 0.12 tolerated(0.3) benign(0.312) TCGA-A3-3383-01 10 87966299 87966299 G C GRID1 Silent p.L114L 0.24 TCGA-A3-3383-01 11 119059779 119059779 C T PDZD3 Silent p.N451N 0.04 TCGA-A3-3383-01 11 120198001 120198001 A T TMEM136 5'UTR 0.37 TCGA-A3-3383-01 11 124121146 124121146 A T OR8G1 Missense_Mutation p.S242C 0.31 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-A3-3383-01 11 124121147 124121147 G A OR8G1 Missense_Mutation p.S242N 0.32 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-A3-3383-01 11 33123767 33123767 C T CSTF3 Missense_Mutation p.S261N 0.26 tolerated(0.08) benign(0.006) TCGA-A3-3383-01 11 375649 375649 C T B4GALNT4 Silent p.A287A 0.27 TCGA-A3-3383-01 11 61404307 61404307 G T RPLP0P2 RNA 0.34 TCGA-A3-3383-01 11 6479378 6479378 C T TRIM3 Missense_Mutation p.D94N 0.31 tolerated(0.18) benign(0.285) TCGA-A3-3383-01 11 82877725 82877725 A G PCF11 Missense_Mutation p.R596G 0.23 deleterious(0) probably_damaging(0.997) TCGA-A3-3383-01 12 10783738 10783738 C T STYK1 Silent p.Q119Q 0.08 TCGA-A3-3383-01 12 122369710 122369710 A T WDR66 Missense_Mutation p.E269V 0.30 tolerated(0.14) benign(0.035) TCGA-A3-3383-01 12 26848561 26848561 G C ITPR2 Missense_Mutation p.A325G 0.21 tolerated(0.23) benign(0.001) TCGA-A3-3383-01 12 26848562 26848562 C T ITPR2 Missense_Mutation p.A325T 0.23 tolerated(0.48) benign(0.099) TCGA-A3-3383-01 15 40505655 40505655 G A BUB1B Silent p.R886R 0.31 TCGA-A3-3383-01 16 24564874 24564874 C A RBBP6 Missense_Mutation p.T115K 0.20 deleterious_low_confidence(0.03) benign(0.066) TCGA-A3-3383-01 16 31089750 31089751 - T ZNF646 Frame_Shift_Ins p.E703* 0.35 TCGA-A3-3383-01 16 4412076 4412076 G T CORO7 Silent p.T496T 0.38 TCGA-A3-3383-01 17 10442759 10442759 A G MYH2 Splice_Site p.X422_splice 0.25 TCGA-A3-3383-01 17 40028034 40028034 C T ACLY Missense_Mutation p.A949T 0.29 deleterious(0.01) probably_damaging(0.968) TCGA-A3-3383-01 17 76692093 76692093 T A CYTH1 Intron 0.31 TCGA-A3-3383-01 19 10116808 10116808 C T COL5A3 Missense_Mutation p.R63Q 0.12 unknown(0) TCGA-A3-3383-01 19 11224382 11224382 G A LDLR Silent p.T510T 0.31 TCGA-A3-3383-01 19 12783897 12783897 T A WDR83 Missense_Mutation p.L217H 0.29 deleterious(0) probably_damaging(0.993) TCGA-A3-3383-01 19 38573642 38573642 C T SIPA1L3 Silent p.P479P 0.34 TCGA-A3-3383-01 19 53270877 53270877 A - ZNF600 Frame_Shift_Del p.I44Mfs*17 0.26 TCGA-A3-3383-01 19 55399613 55399613 C T FCAR Missense_Mutation p.P201S 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-A3-3383-01 1 114967253 114967253 C A TRIM33 Missense_Mutation p.G607V 0.33 tolerated(0.25) possibly_damaging(0.502) TCGA-A3-3383-01 1 17023321 17023321 T G ESPNP RNA 0.08 TCGA-A3-3383-01 1 229600610 229600620 GGACCACTTGT - NUP133 Frame_Shift_Del p.T768Wfs*12 0.16 TCGA-A3-3383-01 1 41471734 41471734 A G CTPS1 Missense_Mutation p.T422A 0.38 tolerated(0.19) benign(0.032) TCGA-A3-3383-01 1 68897205 68897206 - A RPE65 Frame_Shift_Ins p.D398* 0.39 TCGA-A3-3383-01 20 45771755 45771757 GCA - EYA2 In_Frame_Del p.A316del 0.29 TCGA-A3-3383-01 22 50954874 50954874 A C NCAPH2 Splice_Site p.X37_splice 0.30 TCGA-A3-3383-01 2 10101473 10101473 G C GRHL1 Missense_Mutation p.D193H 0.31 tolerated(0.07) benign(0.176) TCGA-A3-3383-01 2 106717553 106717553 C A UXS1 Silent p.V315V 0.28 TCGA-A3-3383-01 2 152112099 152112099 T C RBM43 Missense_Mutation p.I54M 0.33 tolerated(0.18) probably_damaging(0.966) TCGA-A3-3383-01 2 219140112 219140112 C T TMBIM1 3'UTR 0.21 TCGA-A3-3383-01 2 27256957 27256957 C A TMEM214 Silent p.T58T 0.32 TCGA-A3-3383-01 2 44457623 44457623 T G PPM1B Missense_Mutation p.N402K 0.11 deleterious_low_confidence(0.01) benign(0.058) TCGA-A3-3383-01 2 97164150 97164150 T C NEURL3 RNA 0.22 TCGA-A3-3383-01 3 10191488 10191488 C T VHL Nonsense_Mutation p.R161* 0.49 TCGA-A3-3383-01 3 139090606 139090606 A - COPB2 Frame_Shift_Del p.F388Lfs*18 0.31 TCGA-A3-3383-01 3 47162162 47162162 G A SETD2 Nonsense_Mutation p.R1322* 0.48 TCGA-A3-3383-01 3 52702569 52702569 T - PBRM1 Frame_Shift_Del p.N110Ifs*3 0.37 TCGA-A3-3383-01 4 111539589 111539589 A T PITX2 Missense_Mutation p.S223T 0.31 tolerated(0.14) probably_damaging(0.979) TCGA-A3-3383-01 4 1305934 1305934 C T MAEA Silent p.S79S 0.23 TCGA-A3-3383-01 4 20599967 20599967 G A SLIT2 Missense_Mutation p.R1214H 0.33 tolerated(1) possibly_damaging(0.675) TCGA-A3-3383-01 4 7062876 7062876 G A GRPEL1 Nonsense_Mutation p.Q123* 0.33 TCGA-A3-3383-01 6 101095127 101095127 C A ASCC3 Silent p.L1151L 0.10 TCGA-A3-3383-01 6 107011654 107011656 TGC A AIM1 Frame_Shift_Del p.C1644Tfs*23 0.39 TCGA-A3-3383-01 6 17662260 17662260 T C NUP153 Silent p.E419E 0.31 TCGA-A3-3383-01 6 28334004 28334004 T - ZKSCAN3 Frame_Shift_Del p.S521Hfs*11 0.27 TCGA-A3-3383-01 6 33140387 33140387 C A COL11A2 Missense_Mutation p.G854W 0.34 probably_damaging(0.984) TCGA-A3-3383-01 6 33254931 33254931 C T WDR46 Missense_Mutation p.G318R 0.34 deleterious(0) probably_damaging(1) TCGA-A3-3383-01 7 100086843 100086854 GTACCAGCTCAA - NYAP1 In_Frame_Del p.C500_R504delinsW 0.24 TCGA-A3-3383-01 7 111555908 111555908 C T DOCK4 Missense_Mutation p.R373K 0.33 tolerated(0.31) benign(0.076) TCGA-A3-3383-01 7 135307659 135307659 C T NUP205 Missense_Mutation p.H1489Y 0.31 deleterious(0) probably_damaging(0.915) TCGA-A3-3383-01 7 75054987 75054987 C G POM121C Missense_Mutation p.E193Q 0.30 deleterious(0.03) possibly_damaging(0.484) TCGA-A3-3383-01 X 9914789 9914789 C T SHROOM2 Missense_Mutation p.R1555C 0.29 deleterious(0) probably_damaging(0.996) TCGA-A3-3385-01 10 29769552 29769552 T C SVIL Missense_Mutation p.Y1764C 0.50 deleterious(0) probably_damaging(0.998) TCGA-A3-3385-01 10 69676090 69676091 - A SIRT1 Frame_Shift_Ins p.D663Rfs*2 0.33 TCGA-A3-3385-01 10 75562102 75562102 G T NDST2 3'UTR 0.64 TCGA-A3-3385-01 11 7981799 7981799 A C NLRP10 Missense_Mutation p.L454V 0.41 deleterious(0.01) benign(0.021) TCGA-A3-3385-01 11 86106349 86106349 T C CCDC81 Intron 0.44 TCGA-A3-3385-01 12 100660755 100660755 G A DEPDC4 Silent p.L34L 0.44 TCGA-A3-3385-01 12 112165896 112165896 A T ACAD10 Missense_Mutation p.I429F 0.03 deleterious(0) possibly_damaging(0.529) TCGA-A3-3385-01 12 118588785 118588785 T G TAOK3 3'UTR 0.40 TCGA-A3-3385-01 12 124858994 124858994 C T NCOR2 Missense_Mutation p.G728E 0.39 unknown(0) TCGA-A3-3385-01 12 125267275 125267275 A G SCARB1 Missense_Mutation p.M495T 0.44 tolerated_low_confidence(0.14) benign(0.027) TCGA-A3-3385-01 12 14924041 14924041 A G HIST4H4 5'UTR 0.29 TCGA-A3-3385-01 13 96743104 96743104 T A HS6ST3 5'UTR 0.62 TCGA-A3-3385-01 14 21486946 21486946 G T NDRG2 Missense_Mutation p.D263E 0.49 deleterious(0) possibly_damaging(0.726) TCGA-A3-3385-01 14 74036174 74036174 G - ACOT2 Frame_Shift_Del p.D78Tfs*11 0.43 TCGA-A3-3385-01 14 81659180 81659180 G T GTF2A1 Missense_Mutation p.L206M 0.48 deleterious(0.02) probably_damaging(0.998) TCGA-A3-3385-01 15 40628801 40628801 C T C15orf52 Silent p.K331K 0.40 TCGA-A3-3385-01 17 10447217 10447217 A T MYH2 Splice_Site p.X216_splice 0.36 TCGA-A3-3385-01 17 10535182 10535182 G A MYH3 Missense_Mutation p.A1703V 0.28 deleterious(0.03) probably_damaging(0.992) TCGA-A3-3385-01 17 37876087 37876087 G C ERBB2 Missense_Mutation p.S649T 0.39 tolerated(0.4) possibly_damaging(0.763) TCGA-A3-3385-01 17 7291994 7291994 G A TNK1 Missense_Mutation p.D588N 0.29 tolerated(0.34) benign(0.027) TCGA-A3-3385-01 19 1257108 1257108 C T MIDN Missense_Mutation p.P415L 0.24 deleterious(0) possibly_damaging(0.726) TCGA-A3-3385-01 19 15298087 15298087 C A NOTCH3 Missense_Mutation p.G557C 0.44 deleterious(0) probably_damaging(1) TCGA-A3-3385-01 19 35770041 35770054 GCTCCCTTGACCTC - USF2 Intron 0.35 TCGA-A3-3385-01 19 35849783 35862252 19:35849783-35862252 - FFAR3 large deletion 0.46 TCGA-A3-3385-01 19 36884269 36884269 G C ZFP82 Missense_Mutation p.L325V 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-A3-3385-01 19 37005751 37005751 A G ZNF260 Silent p.H130H 0.42 TCGA-A3-3385-01 19 40900148 40900148 G T PRX Silent p.R1371R 0.07 TCGA-A3-3385-01 19 46094848 46094848 A T GPR4 Missense_Mutation p.F93I 0.43 tolerated(0.06) probably_damaging(0.998) TCGA-A3-3385-01 1 110589317 110589317 A C STRIP1 Missense_Mutation p.I478L 0.44 tolerated(1) benign(0.077) TCGA-A3-3385-01 1 110709707 110709708 GG - SLC6A17 Frame_Shift_Del p.E53Gfs*13 0.47 TCGA-A3-3385-01 1 150769266 150769266 T C CTSK 3'UTR 0.42 TCGA-A3-3385-01 1 153723568 153723568 C A INTS3 Intron 0.46 TCGA-A3-3385-01 1 155308160 155308160 G C ASH1L Silent p.R2841R 0.33 TCGA-A3-3385-01 1 168269666 168269666 C T TBX19 Silent p.H224H 0.31 TCGA-A3-3385-01 1 200617572 200617572 G A DDX59 Missense_Mutation p.H531Y 0.38 deleterious(0) probably_damaging(1) TCGA-A3-3385-01 1 201926640 201926640 G T TIMM17A Missense_Mutation p.G43V 0.30 deleterious(0) probably_damaging(1) TCGA-A3-3385-01 1 248436460 248436460 G C OR2T33 Missense_Mutation p.I219M 0.20 deleterious(0) probably_damaging(0.991) TCGA-A3-3385-01 20 57598805 57598805 A T TUBB1 Missense_Mutation p.E108V 0.58 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-A3-3385-01 22 20127299 20127299 C A ZDHHC8 Silent p.R147R 0.41 TCGA-A3-3385-01 22 30866207 30866207 G T SEC14L3 Missense_Mutation p.L56I 0.05 tolerated(0.09) benign(0.009) TCGA-A3-3385-01 22 32058198 32058198 G T PISD 5'UTR 0.39 TCGA-A3-3385-01 22 35659854 35659854 T - HMGXB4 Frame_Shift_Del p.Y83Tfs*31 0.38 TCGA-A3-3385-01 22 44893405 44893405 C T LDOC1L Missense_Mutation p.S11N 0.32 deleterious_low_confidence(0.01) benign(0) TCGA-A3-3385-01 2 105914998 105914998 T C TGFBRAP1 Missense_Mutation p.K285E 0.45 tolerated(0.15) benign(0.012) TCGA-A3-3385-01 2 116485484 116485484 T A DPP10 Missense_Mutation p.F227L 0.44 tolerated(0.16) benign(0.075) TCGA-A3-3385-01 2 116485485 116485485 A C DPP10 Missense_Mutation p.N228H 0.43 deleterious(0) probably_damaging(0.999) TCGA-A3-3385-01 2 145157350 145157350 G T ZEB2 Missense_Mutation p.D468E 0.35 deleterious(0) probably_damaging(0.997) TCGA-A3-3385-01 2 180851432 180851432 T A CWC22 Missense_Mutation p.M66L 0.42 tolerated(0.65) benign(0.003) TCGA-A3-3385-01 2 228881372 228881372 C G SPHKAP Missense_Mutation p.D1400H 0.37 deleterious(0.01) possibly_damaging(0.781) TCGA-A3-3385-01 2 47703619 47703619 T C MSH2 Missense_Mutation p.C707R 0.40 deleterious(0.01) benign(0.178) TCGA-A3-3385-01 2 64196097 64196097 T A VPS54 Silent p.V162V 0.39 TCGA-A3-3385-01 3 15292631 15292631 T A CAPN7 Missense_Mutation p.F769Y 0.35 tolerated(0.5) benign(0.366) TCGA-A3-3385-01 3 52729309 52729309 C T GLT8D1 Silent p.L274L 0.04 TCGA-A3-3385-01 5 140768184 140768184 G C PCDHGB4 Missense_Mutation p.D245H 0.27 deleterious(0) possibly_damaging(0.841) TCGA-A3-3385-01 5 36117868 36117868 G A LMBRD2 Missense_Mutation p.A424V 0.55 deleterious(0.01) probably_damaging(1) TCGA-A3-3385-01 5 37006527 37006527 G A NIPBL Silent p.A1308A 0.30 TCGA-A3-3385-01 5 38955727 38955727 C T RICTOR Missense_Mutation p.G860D 0.58 tolerated(0.1) probably_damaging(1) TCGA-A3-3385-01 5 64933559 64933559 C T TRAPPC13 Silent p.I84I 0.31 TCGA-A3-3385-01 5 678108 678108 G T TPPP Nonsense_Mutation p.S23* 0.38 TCGA-A3-3385-01 6 105192486 105192486 C A HACE1 Splice_Site p.X782_splice 0.40 TCGA-A3-3385-01 6 129663519 129663519 G C LAMA2 Missense_Mutation p.C1448S 0.33 deleterious(0) probably_damaging(1) TCGA-A3-3385-01 6 131190764 131190764 A C EPB41L2 Missense_Mutation p.V849G 0.38 tolerated(0.11) probably_damaging(0.95) TCGA-A3-3385-01 6 166778943 166778943 T - MPC1 Splice_Site p.X102_splice 0.34 TCGA-A3-3385-01 6 56883335 56883335 G T BEND6 Missense_Mutation p.D277Y 0.31 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-A3-3385-01 6 74073548 74073548 C T KHDC3L Missense_Mutation p.R207C 0.41 tolerated(0.07) benign(0.34) TCGA-A3-3385-01 6 80203392 80203392 C A LCA5 Nonsense_Mutation p.E266* 0.43 TCGA-A3-3385-01 7 115624462 115624462 G C TFEC Missense_Mutation p.L12V 0.28 tolerated(0.05) benign(0.019) TCGA-A3-3385-01 7 35678058 35678058 C A HERPUD2 Silent p.G173G 0.31 TCGA-A3-3385-01 7 72892732 72892732 C G BAZ1B Silent p.V353V 0.49 TCGA-A3-3385-01 7 99661552 99661552 A - ZSCAN21 Frame_Shift_Del p.N246Mfs*240 0.25 TCGA-A3-3385-01 8 29018370 29018370 C - KIF13B Frame_Shift_Del p.Q428Hfs*24 0.25 TCGA-A3-3385-01 8 38314935 38314935 C A FGFR1 Missense_Mutation p.W43C 0.28 deleterious_low_confidence(0.05) possibly_damaging(0.769) TCGA-A3-3385-01 8 57353861 57353861 T G PENK Missense_Mutation p.E258D 0.51 tolerated(0.07) benign(0.071) TCGA-A3-3385-01 8 82626242 82626242 A G ZFAND1 Missense_Mutation p.W131R 0.40 tolerated(1) benign(0) TCGA-A3-3385-01 9 139396756 139396756 C A NOTCH1 Silent p.R1784R 0.13 TCGA-A3-3385-01 X 117960298 117960298 G T ZCCHC12 Missense_Mutation p.S364I 0.33 deleterious(0.03) benign(0.036) TCGA-A3-3385-01 X 150868604 150868604 A T PRRG3 Missense_Mutation p.E48D 0.37 deleterious(0.01) probably_damaging(0.976) TCGA-A3-3385-01 X 20081684 20081684 G A MAP7D2 Nonsense_Mutation p.Q74* 0.38 TCGA-A3-3385-01 X 70145508 70145508 A C SLC7A3 3'UTR 0.32 TCGA-A3-3385-01 X 78427224 78427224 A - GPR174 Frame_Shift_Del p.I241Ffs*12 0.32 TCGA-A3-3387-01 10 114201991 114201991 A G ZDHHC6 Missense_Mutation p.F160L 0.23 tolerated(0.32) benign(0.012) TCGA-A3-3387-01 11 116660943 116660944 - C APOA5 Frame_Shift_Ins p.K335Qfs*12 0.52 TCGA-A3-3387-01 11 125648641 125648641 C T PATE2 Missense_Mutation p.V10I 0.07 tolerated(0.52) unknown(0) TCGA-A3-3387-01 11 18231485 18231485 G A RP11-113D6.10 Missense_Mutation p.G91R 0.09 deleterious(0) probably_damaging(0.999) TCGA-A3-3387-01 11 55587894 55587896 CAA - OR5D18 In_Frame_Del p.N264del 0.27 TCGA-A3-3387-01 11 64658636 64658636 A G ATG2A 3'Flank 0.31 TCGA-A3-3387-01 11 76867726 76867726 A G MYO7A Missense_Mutation p.K164R 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-A3-3387-01 11 82972989 82972989 C T CCDC90B Silent p.L243L 0.07 TCGA-A3-3387-01 12 12491487 12491487 T - MANSC1 Frame_Shift_Del p.A78Hfs*4 0.17 TCGA-A3-3387-01 12 125397153 125397153 T C UBC Missense_Mutation p.T389A 0.17 tolerated(0.15) possibly_damaging(0.768) TCGA-A3-3387-01 12 13906469 13906469 C A GRIN2B Silent p.G264G 0.32 TCGA-A3-3387-01 12 13906470 13906470 C T GRIN2B Missense_Mutation p.G264E 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-A3-3387-01 12 27628533 27628533 C T SMCO2 Silent p.F127F 0.23 TCGA-A3-3387-01 12 300301 300301 C T SLC6A12 Missense_Mutation p.G593D 0.28 tolerated(0.67) benign(0.001) TCGA-A3-3387-01 12 336752 336752 T C SLC6A13 Missense_Mutation p.K305R 0.29 tolerated(0.13) benign(0.107) TCGA-A3-3387-01 14 105624079 105624079 C A JAG2 Nonsense_Mutation p.E147* 0.21 TCGA-A3-3387-01 14 23504076 23504076 G T PSMB5 Missense_Mutation p.S5R 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-A3-3387-01 15 86123604 86123604 A G AKAP13 Missense_Mutation p.M769V 0.34 tolerated_low_confidence(0.22) benign(0.014) TCGA-A3-3387-01 15 90796515 90796515 G A TTLL13 Silent p.E111E 0.06 TCGA-A3-3387-01 15 98509153 98509153 T G ARRDC4 Missense_Mutation p.Y135D 0.07 deleterious(0.05) benign(0.186) TCGA-A3-3387-01 16 11845212 11845212 G C ZC3H7A Missense_Mutation p.D959E 0.27 deleterious(0) probably_damaging(0.999) TCGA-A3-3387-01 16 11935566 11935566 T G RSL1D1 Missense_Mutation p.N281H 0.11 tolerated(0.13) benign(0.008) TCGA-A3-3387-01 16 88690383 88690383 C T ZC3H18 Missense_Mutation p.S604L 0.11 deleterious_low_confidence(0) benign(0.356) TCGA-A3-3387-01 16 89836339 89836339 C T FANCA Missense_Mutation p.G804S 0.21 tolerated(0.38) possibly_damaging(0.855) TCGA-A3-3387-01 17 10261145 10261145 C T MYH13 Splice_Site p.X216_splice 0.30 TCGA-A3-3387-01 17 21731002 21731002 G A UBBP4 Missense_Mutation p.V102M 0.18 deleterious(0.02) probably_damaging(0.951) TCGA-A3-3387-01 17 43226612 43226612 A C HEXIM1 Missense_Mutation p.T19P 0.12 deleterious_low_confidence(0) possibly_damaging(0.448) TCGA-A3-3387-01 17 48551987 48551987 T C ACSF2 3'UTR 0.25 TCGA-A3-3387-01 18 65181609 65181609 A T DSEL Silent p.S89S 0.27 TCGA-A3-3387-01 19 37975663 37975663 A G ZNF570 Missense_Mutation p.H380R 0.23 deleterious(0) probably_damaging(0.996) TCGA-A3-3387-01 19 43519423 43519423 T C PSG11 Missense_Mutation p.Q270R 0.21 tolerated(0.1) benign(0.005) TCGA-A3-3387-01 19 44833539 44833539 A T ZNF112 Nonsense_Mutation p.Y263* 0.30 TCGA-A3-3387-01 19 50868922 50868922 T C NAPSA 5'UTR 0.14 TCGA-A3-3387-01 19 6496076 6496076 G T TUBB4A Missense_Mutation p.S145Y 0.26 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-A3-3387-01 19 8183887 8183887 C T FBN3 Silent p.R1077R 0.12 TCGA-A3-3387-01 1 10221342 10221342 C T UBE4B Missense_Mutation p.R1066W 0.08 deleterious(0) probably_damaging(0.983) TCGA-A3-3387-01 1 1198752 1198752 C T UBE2J2 Missense_Mutation p.R65Q 0.08 tolerated(0.16) possibly_damaging(0.806) TCGA-A3-3387-01 1 145109641 145109641 G A SEC22B RNA 0.06 TCGA-A3-3387-01 1 154307015 154307015 C T ATP8B2 Missense_Mutation p.T295I 0.07 tolerated(0.32) probably_damaging(0.997) TCGA-A3-3387-01 1 156814334 156814334 T C INSRR Missense_Mutation p.Y886C 0.32 deleterious(0) probably_damaging(1) TCGA-A3-3387-01 1 17084468 17084468 C T MST1L RNA 0.07 TCGA-A3-3387-01 1 170985418 170985418 A C MROH9 Missense_Mutation p.K617Q 0.25 deleterious(0.02) probably_damaging(0.947) TCGA-A3-3387-01 1 17720899 17720899 G A PADI6 RNA 0.13 TCGA-A3-3387-01 1 230461073 230461073 G A PGBD5 Silent p.Y385Y 0.10 TCGA-A3-3387-01 1 27874531 27874531 C T AHDC1 Missense_Mutation p.D1366N 0.32 deleterious(0) possibly_damaging(0.741) TCGA-A3-3387-01 1 31837090 31837090 G A ZCCHC17 3'UTR 0.05 TCGA-A3-3387-01 1 33960693 33960693 A G ZSCAN20 Missense_Mutation p.T917A 0.10 tolerated(0.35) possibly_damaging(0.519) TCGA-A3-3387-01 1 34684328 34684328 A G C1orf94 Missense_Mutation p.Y588C 0.24 deleterious(0) probably_damaging(0.999) TCGA-A3-3387-01 1 35578915 35578915 T A ZMYM1 Missense_Mutation p.F495Y 0.28 deleterious(0.04) benign(0.026) TCGA-A3-3387-01 1 36939104 36939104 C G CSF3R Missense_Mutation p.W202S 0.20 deleterious(0) possibly_damaging(0.68) TCGA-A3-3387-01 1 39340771 39340771 A C GJA9 Missense_Mutation p.S334A 0.23 tolerated(0.51) benign(0) TCGA-A3-3387-01 1 41012841 41012841 T C ZNF684 Silent p.Y282Y 0.20 TCGA-A3-3387-01 1 62979390 62979390 A G DOCK7 Silent p.Y1341Y 0.09 TCGA-A3-3387-01 20 4721284 4721284 C A PRNT 5'UTR 0.09 TCGA-A3-3387-01 20 5099285 5099285 C T PCNA Missense_Mutation p.D120N 0.23 tolerated(0.14) benign(0.19) TCGA-A3-3387-01 22 18382309 18382309 C T MICAL3 Missense_Mutation p.D285N 0.24 probably_damaging(0.991) TCGA-A3-3387-01 22 41832790 41832790 C T TOB2 Missense_Mutation p.G187D 0.18 deleterious(0) probably_damaging(0.994) TCGA-A3-3387-01 2 1094047 1094047 T G SNTG2 Silent p.S92S 0.22 TCGA-A3-3387-01 2 17773470 17773470 A G VSNL1 Silent p.L43L 0.29 TCGA-A3-3387-01 2 204267389 204267389 C A ABI2 Missense_Mutation p.P308H 0.26 deleterious(0) probably_damaging(0.985) TCGA-A3-3387-01 2 24261142 24261142 A T C2orf44 Missense_Mutation p.L408H 0.07 tolerated(0.16) possibly_damaging(0.717) TCGA-A3-3387-01 3 122003164 122003164 T A CASR Missense_Mutation p.F798Y 0.31 deleterious(0) probably_damaging(0.989) TCGA-A3-3387-01 3 122418640 122418640 A T PARP14 Silent p.I413I 0.19 TCGA-A3-3387-01 3 155571204 155571204 T A SLC33A1 Missense_Mutation p.I195F 0.20 deleterious(0) probably_damaging(0.928) TCGA-A3-3387-01 3 182871951 182871951 T C LAMP3 Missense_Mutation p.N93S 0.19 tolerated(1) benign(0) TCGA-A3-3387-01 3 187446247 187446247 G A BCL6 Nonsense_Mutation p.Q481* 0.09 TCGA-A3-3387-01 3 196434643 196434643 C A CEP19 Nonsense_Mutation p.E95* 0.21 TCGA-A3-3387-01 3 52643561 52643561 G A PBRM1 Nonsense_Mutation p.Q779* 0.36 TCGA-A3-3387-01 4 120442144 120442144 A G PDE5A Silent p.H617H 0.20 TCGA-A3-3387-01 4 153273982 153273982 C A FBXW7 Intron 0.14 TCGA-A3-3387-01 4 156757933 156757933 T G ASIC5 Missense_Mutation p.E381D 0.22 tolerated(0.64) benign(0.022) TCGA-A3-3387-01 4 162697129 162697138 ATTAGGATTT C FSTL5 In_Frame_Del p.N167_N169del 0.13 TCGA-A3-3387-01 4 17516859 17516859 G C CLRN2 5'UTR 0.19 TCGA-A3-3387-01 5 137621505 137621505 C A CDC25C Missense_Mutation p.C433F 0.08 deleterious(0.03) probably_damaging(0.923) TCGA-A3-3387-01 5 139876554 139876554 G T ANKHD1 Missense_Mutation p.V899F 0.40 unknown(0) TCGA-A3-3387-01 5 140085370 140085370 C A ZMAT2 3'UTR 0.11 TCGA-A3-3387-01 5 141021013 141021013 A C FCHSD1 3'UTR 0.14 TCGA-A3-3387-01 5 14364016 14364016 T G TRIO Missense_Mutation p.V856G 0.05 possibly_damaging(0.777) TCGA-A3-3387-01 5 14497119 14497119 C A TRIO Missense_Mutation p.S2671Y 0.22 unknown(0) TCGA-A3-3387-01 5 36255599 36255599 C A RANBP3L Missense_Mutation p.D358Y 0.08 deleterious(0) probably_damaging(0.956) TCGA-A3-3387-01 5 41045851 41045851 C T MROH2B Silent p.E611E 0.22 TCGA-A3-3387-01 6 117674152 117674152 C A ROS1 Splice_Site p.X1441_splice 0.27 TCGA-A3-3387-01 6 139206666 139206666 C A ECT2L Missense_Mutation p.F684L 0.28 deleterious(0.02) benign(0.335) TCGA-A3-3387-01 6 150210680 150210680 G A RAET1E Silent p.T142T 0.22 TCGA-A3-3387-01 6 49819726 49819726 G T CRISP1 Missense_Mutation p.N61K 0.20 deleterious(0) probably_damaging(1) TCGA-A3-3387-01 6 71236364 71236364 T C FAM135A Missense_Mutation p.S1193P 0.14 tolerated(0.07) benign(0.018) TCGA-A3-3387-01 6 74227570 74227570 A T EEF1A1 Missense_Mutation p.V451D 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.562) TCGA-A3-3387-01 6 88367719 88367719 C A ORC3 Missense_Mutation p.F559L 0.08 tolerated(0.06) benign(0.139) TCGA-A3-3387-01 7 139221070 139221070 A C CLEC2L Missense_Mutation p.I81L 0.28 tolerated(0.36) benign(0.017) TCGA-A3-3387-01 7 140155662 140155662 A G MKRN1 Missense_Mutation p.I342T 0.07 deleterious(0.02) probably_damaging(0.971) TCGA-A3-3387-01 7 148486899 148486899 C - CUL1 Frame_Shift_Del p.T552Nfs*28 0.37 TCGA-A3-3387-01 7 43548639 43548639 G T HECW1 Missense_Mutation p.G1313V 0.23 deleterious(0) probably_damaging(1) TCGA-A3-3387-01 7 48353926 48353926 C A ABCA13 Missense_Mutation p.S3260Y 0.30 probably_damaging(0.935) TCGA-A3-3387-01 7 54610387 54610387 G T VSTM2A 5'UTR 0.09 TCGA-A3-3387-01 7 82545945 82545945 T G PCLO Missense_Mutation p.E3786A 0.10 unknown(0) TCGA-A3-3387-01 7 87069080 87069080 C T ABCB4 Missense_Mutation p.R545H 0.08 deleterious(0) probably_damaging(0.999) TCGA-A3-3387-01 7 88965798 88965798 C T ZNF804B Missense_Mutation p.H1168Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-A3-3387-01 8 133911118 133911118 C A TG Missense_Mutation p.P1098Q 0.24 deleterious(0.03) possibly_damaging(0.83) TCGA-A3-3387-01 8 71508498 71508498 G A TRAM1 Missense_Mutation p.T162I 0.24 tolerated(0.26) benign(0.225) TCGA-A3-3387-01 9 139228923 139228923 G C GPSM1 Missense_Mutation p.E30Q 0.33 deleterious(0) probably_damaging(0.935) TCGA-A3-3387-01 9 18684860 18684860 T G ADAMTSL1 Intron 0.25 TCGA-A3-3387-01 9 5763718 5763718 C T KIAA1432 Silent p.F897F 0.27 TCGA-A3-3387-01 9 88648293 88648293 G A GOLM1 Silent p.L345L 0.25 TCGA-A3-3387-01 X 19026097 19026097 C T GPR64 Splice_Site p.X522_splice 0.44 TCGA-A3-3387-01 X 79699115 79699115 A G FAM46D Silent p.A359A 0.08 TCGA-A3-A6NI-01 10 100904024 100904024 G T HPSE2 Missense_Mutation p.S194Y 0.22 tolerated(0.26) probably_damaging(0.975) TCGA-A3-A6NI-01 10 122612046 122612046 G - WDR11 Frame_Shift_Del p.G33Vfs*2 0.20 TCGA-A3-A6NI-01 10 88227131 88227131 G A WAPAL Silent p.L759L 0.31 TCGA-A3-A6NI-01 10 88227132 88227132 C G WAPAL Missense_Mutation p.K758N 0.31 tolerated(0.51) benign(0.446) TCGA-A3-A6NI-01 11 100792319 100792319 T C ARHGAP42 Missense_Mutation p.F194S 0.31 deleterious(0) probably_damaging(0.998) TCGA-A3-A6NI-01 11 102743798 102743798 T A MMP12 RNA 0.41 TCGA-A3-A6NI-01 11 55371070 55371070 C T OR4C11 Silent p.P260P 0.26 TCGA-A3-A6NI-01 11 55798016 55798016 G A OR5AS1 Missense_Mutation p.G41E 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-A3-A6NI-01 11 60670333 60670333 G A PRPF19 Silent p.S89S 0.35 TCGA-A3-A6NI-01 11 68517951 68517951 T G MTL5 Missense_Mutation p.K60Q 0.24 tolerated_low_confidence(0.21) benign(0.007) TCGA-A3-A6NI-01 12 120637144 120637144 C T RPLP0 Missense_Mutation p.G67R 0.27 deleterious(0.05) possibly_damaging(0.573) TCGA-A3-A6NI-01 12 12630805 12630805 A G DUSP16 Silent p.N320N 0.31 TCGA-A3-A6NI-01 12 21201826 21201826 C T SLCO1B7 Missense_Mutation p.T392I 0.17 deleterious(0) probably_damaging(0.943) TCGA-A3-A6NI-01 12 29464050 29464052 AGC T FAR2 Frame_Shift_Del p.A287Cfs*11 0.28 TCGA-A3-A6NI-01 12 56515174 56515182 CAATCAGGC - ZC3H10 In_Frame_Del p.N277_A279del 0.25 TCGA-A3-A6NI-01 12 57492619 57492619 C G STAT6 Missense_Mutation p.M674I 0.26 tolerated(0.39) benign(0.012) TCGA-A3-A6NI-01 12 88479838 88479838 G T CEP290 Missense_Mutation p.A1472E 0.14 benign(0.436) TCGA-A3-A6NI-01 14 103805089 103805089 T C EIF5 Silent p.D201D 0.45 TCGA-A3-A6NI-01 14 45369881 45369881 T G C14orf28 Silent p.S81S 0.43 TCGA-A3-A6NI-01 15 59192018 59192018 T - SLTM Frame_Shift_Del p.E237Kfs*27 0.20 TCGA-A3-A6NI-01 15 79350769 79350769 C T RASGRF1 Silent p.L146L 0.25 TCGA-A3-A6NI-01 16 3790479 3790479 G T CREBBP Missense_Mutation p.P1352T 0.35 unknown(0) TCGA-A3-A6NI-01 16 9857955 9857955 T C GRIN2A Missense_Mutation p.D1149G 0.25 deleterious(0.01) benign(0.202) TCGA-A3-A6NI-01 17 33879751 33879751 C T SLFN14 Silent p.V634V 0.32 TCGA-A3-A6NI-01 17 3984706 3984706 C T ZZEF1 Silent p.A931A 0.34 TCGA-A3-A6NI-01 17 39883631 39883631 C T HAP1 Intron 0.34 TCGA-A3-A6NI-01 17 48599343 48599343 G A MYCBPAP Silent p.L429L 0.28 TCGA-A3-A6NI-01 17 61890675 61890675 G A DDX42 Missense_Mutation p.R588H 0.18 deleterious(0) probably_damaging(0.999) TCGA-A3-A6NI-01 17 73737081 73737081 G A ITGB4 Silent p.G876G 0.32 TCGA-A3-A6NI-01 18 5415840 5415840 G A EPB41L3 Missense_Mutation p.P682S 0.35 tolerated(0.26) benign(0.171) TCGA-A3-A6NI-01 18 72228143 72228143 G A CNDP1 Missense_Mutation p.G119E 0.39 deleterious(0.02) possibly_damaging(0.758) TCGA-A3-A6NI-01 19 11132513 11132513 C T SMARCA4 Missense_Mutation p.T910M 0.26 probably_damaging(0.99) TCGA-A3-A6NI-01 19 2115231 2115231 T C AP3D1 Missense_Mutation p.E779G 0.31 tolerated(0.45) benign(0.01) TCGA-A3-A6NI-01 19 3546408 3546409 - T MFSD12 Frame_Shift_Ins p.G347Rfs*67 0.21 TCGA-A3-A6NI-01 19 45165045 45165045 T A PVR Silent p.S407S 0.07 TCGA-A3-A6NI-01 19 54378185 54378185 G A MYADM 3'UTR 0.06 TCGA-A3-A6NI-01 19 549748 549748 C T GZMM Missense_Mutation p.P244L 0.21 deleterious(0.02) probably_damaging(0.953) TCGA-A3-A6NI-01 19 9764041 9764041 C G ZNF562 Missense_Mutation p.E289Q 0.35 tolerated(0.09) benign(0.214) TCGA-A3-A6NI-01 1 103540227 103540227 T C COL11A1 Missense_Mutation p.T200A 0.22 probably_damaging(0.972) TCGA-A3-A6NI-01 1 115144202 115144202 A T DENND2C Missense_Mutation p.V581E 0.04 tolerated(0.87) benign(0) TCGA-A3-A6NI-01 1 153748499 153748499 G A SLC27A3 Missense_Mutation p.A223T 0.24 deleterious(0.01) possibly_damaging(0.588) TCGA-A3-A6NI-01 1 1551908 1551908 T C MIB2 Silent p.A65A 0.29 TCGA-A3-A6NI-01 1 160054078 160054078 C T KCNJ9 Silent p.R86R 0.40 TCGA-A3-A6NI-01 1 167870995 167870996 TT - ADCY10 Frame_Shift_Del p.N114Hfs*7 0.17 TCGA-A3-A6NI-01 1 209803124 209803124 G A LAMB3 Missense_Mutation p.R364W 0.26 deleterious(0.01) benign(0.224) TCGA-A3-A6NI-01 1 228459848 228459848 C T OBSCN Missense_Mutation p.A1971V 0.38 benign(0.208) TCGA-A3-A6NI-01 1 230398304 230398304 T G GALNT2 Intron 0.31 TCGA-A3-A6NI-01 1 245008359 245008361 ATT - COX20 3'UTR 0.24 TCGA-A3-A6NI-01 1 25554718 25554718 C T SYF2 Silent p.A89A 0.17 TCGA-A3-A6NI-01 1 36299769 36299769 G T AGO4 Missense_Mutation p.V520L 0.32 tolerated(0.35) benign(0.07) TCGA-A3-A6NI-01 1 95392546 95392546 G A CNN3 5'UTR 0.44 TCGA-A3-A6NI-01 20 1460409 1460409 C T SIRPB2 Silent p.R129R 0.39 TCGA-A3-A6NI-01 20 42635255 42635255 G A TOX2 Silent p.P78P 0.26 TCGA-A3-A6NI-01 21 32624306 32624306 C T TIAM1 Missense_Mutation p.R388Q 0.30 tolerated(0.08) probably_damaging(0.97) TCGA-A3-A6NI-01 21 43241422 43241422 C A PRDM15 Splice_Site p.X1053_splice 0.27 TCGA-A3-A6NI-01 2 10830035 10830035 G T NOL10 5'UTR 0.20 TCGA-A3-A6NI-01 2 10830036 10830036 C G NOL10 5'UTR 0.21 TCGA-A3-A6NI-01 2 108994812 108994812 G A SULT1C4 Missense_Mutation p.E7K 0.41 tolerated(0.49) benign(0.001) TCGA-A3-A6NI-01 2 183594612 183594612 G C DNAJC10 Missense_Mutation p.S224T 0.34 tolerated(0.26) benign(0.041) TCGA-A3-A6NI-01 3 10188196 10188196 A C VHL Splice_Site p.X114_splice 0.43 TCGA-A3-A6NI-01 3 108406941 108406941 C T DZIP3 Nonsense_Mutation p.Q1090* 0.26 TCGA-A3-A6NI-01 3 108474709 108474709 C T RETNLB Silent p.S84S 0.27 TCGA-A3-A6NI-01 3 167167162 167167162 C A SERPINI2 Silent p.V331V 0.24 TCGA-A3-A6NI-01 3 194152606 194152607 - TCAA ATP13A3 Frame_Shift_Ins p.T754Ifs*18 0.40 TCGA-A3-A6NI-01 3 56696481 56696481 T A FAM208A Missense_Mutation p.L364F 0.49 deleterious(0.04) probably_damaging(0.935) TCGA-A3-A6NI-01 4 169383104 169383104 C - DDX60L Frame_Shift_Del p.D118Mfs*26 0.21 TCGA-A3-A6NI-01 4 42068599 42068599 A G SLC30A9 Missense_Mutation p.R369G 0.25 deleterious(0.01) possibly_damaging(0.568) TCGA-A3-A6NI-01 4 956398 956398 T C DGKQ Missense_Mutation p.N680S 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-A3-A6NI-01 5 137488356 137488356 C - BRD8 Frame_Shift_Del p.D891Tfs*22 0.17 TCGA-A3-A6NI-01 5 150660606 150660606 C T SLC36A3 Silent p.L412L 0.19 TCGA-A3-A6NI-01 5 176522334 176522334 A G FGFR4 Missense_Mutation p.N508S 0.45 deleterious(0.04) benign(0.179) TCGA-A3-A6NI-01 6 117642484 117642484 C A ROS1 Missense_Mutation p.E1905D 0.29 deleterious(0.01) probably_damaging(0.955) TCGA-A3-A6NI-01 6 12120485 12120485 C A HIVEP1 Missense_Mutation p.P153T 0.26 tolerated(0.23) benign(0.022) TCGA-A3-A6NI-01 6 13305246 13305246 A T TBC1D7 Intron 0.21 TCGA-A3-A6NI-01 6 25777304 25777304 C G SLC17A4 Intron 0.29 TCGA-A3-A6NI-01 6 30681489 30681489 G C MDC1 Missense_Mutation p.L175V 0.28 tolerated(0.2) benign(0.333) TCGA-A3-A6NI-01 6 31680555 31680555 A T LY6G6E Missense_Mutation p.S22T 0.30 tolerated(0.29) benign(0.017) TCGA-A3-A6NI-01 6 43274208 43274208 C A CRIP3 Missense_Mutation p.G126C 0.25 deleterious(0.02) probably_damaging(0.954) TCGA-A3-A6NI-01 7 140156450 140156450 A G MKRN1 Splice_Site p.X329_splice 0.18 TCGA-A3-A6NI-01 7 21894054 21894054 T G DNAH11 Missense_Mutation p.L3735R 0.18 benign(0.301) TCGA-A3-A6NI-01 7 23682624 23682624 G T CCDC126 Missense_Mutation p.D105Y 0.29 deleterious(0) possibly_damaging(0.758) TCGA-A3-A6NI-01 7 23682625 23682625 A T CCDC126 Missense_Mutation p.D105V 0.27 deleterious(0) possibly_damaging(0.532) TCGA-A3-A6NI-01 7 3658724 3658724 C T SDK1 Missense_Mutation p.P104L 0.05 deleterious(0) probably_damaging(0.979) TCGA-A3-A6NI-01 7 45614563 45614563 G T ADCY1 Missense_Mutation p.A141S 0.25 tolerated(0.97) benign(0.168) TCGA-A3-A6NI-01 7 7546771 7546771 G A COL28A1 Missense_Mutation p.P317S 0.24 tolerated(0.15) benign(0.055) TCGA-A3-A6NI-01 7 87280169 87280170 - G RUNDC3B Frame_Shift_Ins p.C52Wfs*3 0.26 TCGA-A3-A6NI-01 8 133759278 133759278 T - TMEM71 Frame_Shift_Del p.S114Vfs*16 0.17 TCGA-A3-A6NI-01 8 38003878 38003878 T A STAR Missense_Mutation p.R132W 0.30 tolerated(0.05) possibly_damaging(0.654) TCGA-A3-A6NI-01 8 68028207 68028207 C G CSPP1 Missense_Mutation p.P444R 0.20 deleterious(0) probably_damaging(1) TCGA-A3-A6NI-01 9 107266899 107266899 C T OR13F1 Missense_Mutation p.A119V 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-A3-A6NI-01 9 140346867 140346867 T G NSMF Missense_Mutation p.N396H 0.26 deleterious(0.01) probably_damaging(0.978) TCGA-A3-A6NI-01 9 2076232 2076232 G T SMARCA2 Nonsense_Mutation p.E647* 0.21 TCGA-A3-A6NI-01 9 32973357 32973357 C G APTX 3'Flank 0.33 TCGA-A3-A6NI-01 9 34610747 34610747 A C RPP25L 3'UTR 0.23 TCGA-A3-A6NI-01 9 86909140 86909142 GTA - SLC28A3 In_Frame_Del p.Y304del 0.28 TCGA-A3-A6NI-01 X 151358340 151358340 C T GABRA3 Silent p.A335A 0.67 TCGA-A3-A6NI-01 X 17152027 17152028 - A REPS2 Frame_Shift_Ins p.D555Gfs*14 0.36 TCGA-A3-A6NI-01 X 64744853 64744853 T G LAS1L Missense_Mutation p.E345A 0.41 deleterious(0.03) benign(0.03) TCGA-A3-A6NI-01 X 70367972 70367972 G A NLGN3 Missense_Mutation p.A125T 0.05 tolerated(0.56) benign(0.102) TCGA-A3-A6NJ-01 10 14951282 14951282 T G DCLRE1C Silent p.R402R 0.14 TCGA-A3-A6NJ-01 10 17126379 17126379 G T CUBN Missense_Mutation p.T731N 0.12 tolerated(1) benign(0.001) TCGA-A3-A6NJ-01 10 90438254 90438254 G A LIPF Nonsense_Mutation p.W348* 0.12 TCGA-A3-A6NJ-01 10 99359841 99359841 G C HOGA1 Silent p.L207L 0.15 TCGA-A3-A6NJ-01 11 20129257 20129257 G A NAV2 Missense_Mutation p.V2356M 0.15 deleterious(0) probably_damaging(0.995) TCGA-A3-A6NJ-01 11 33581362 33581362 T C KIAA1549L Missense_Mutation p.F1011S 0.15 deleterious(0) possibly_damaging(0.906) TCGA-A3-A6NJ-01 11 47861842 47861842 T G NUP160 Intron 0.20 TCGA-A3-A6NJ-01 11 47861893 47861893 T G NUP160 Intron 0.14 TCGA-A3-A6NJ-01 11 50003705 50003705 G T OR4C12 Silent p.I111I 0.15 TCGA-A3-A6NJ-01 11 66476409 66476409 C T SPTBN2 Silent p.T385T 0.16 TCGA-A3-A6NJ-01 12 57548388 57548388 C T LRP1 Silent p.V377V 0.08 TCGA-A3-A6NJ-01 12 81528774 81528774 T A ACSS3 Missense_Mutation p.D212E 0.15 tolerated(0.18) benign(0.39) TCGA-A3-A6NJ-01 12 85255664 85255664 T A SLC6A15 Missense_Mutation p.D647V 0.18 deleterious(0.04) benign(0.11) TCGA-A3-A6NJ-01 12 85255665 85255665 C A SLC6A15 Missense_Mutation p.D647Y 0.18 deleterious(0) benign(0.261) TCGA-A3-A6NJ-01 13 20567997 20567997 G T ZMYM2 Missense_Mutation p.G262V 0.16 deleterious(0) probably_damaging(1) TCGA-A3-A6NJ-01 14 100134639 100134639 A T HHIPL1 Missense_Mutation p.R577W 0.09 deleterious(0) probably_damaging(0.998) TCGA-A3-A6NJ-01 14 21571398 21571398 C A TMEM253 Missense_Mutation p.A212D 0.13 deleterious_low_confidence(0.02) benign(0.012) TCGA-A3-A6NJ-01 14 24537817 24537817 G A LRRC16B Missense_Mutation p.S1236N 0.18 tolerated(0.11) unknown(0) TCGA-A3-A6NJ-01 14 50576395 50576395 T A VCPKMT 3'UTR 0.09 TCGA-A3-A6NJ-01 14 75483894 75483894 T C MLH3 Missense_Mutation p.N1418S 0.06 deleterious(0) probably_damaging(0.994) TCGA-A3-A6NJ-01 15 89400468 89400468 G T ACAN Missense_Mutation p.G1551V 0.15 deleterious(0.01) possibly_damaging(0.742) TCGA-A3-A6NJ-01 15 89843582 89843582 C G FANCI Missense_Mutation p.T952S 0.15 tolerated(0.17) benign(0.021) TCGA-A3-A6NJ-01 16 20335198 20335198 C G GP2 Missense_Mutation p.G159R 0.15 deleterious(0.02) benign(0.323) TCGA-A3-A6NJ-01 16 2495546 2495546 C G CCNF Missense_Mutation p.D339E 0.12 deleterious(0) probably_damaging(0.96) TCGA-A3-A6NJ-01 16 48174758 48174758 C T ABCC12 Missense_Mutation p.C166Y 0.17 deleterious(0) probably_damaging(0.99) TCGA-A3-A6NJ-01 16 67877092 67877092 A G THAP11 Missense_Mutation p.Q212R 0.13 tolerated(0.5) benign(0) TCGA-A3-A6NJ-01 17 7311954 7311954 T A NLGN2 Nonsense_Mutation p.L127* 0.08 TCGA-A3-A6NJ-01 17 78039311 78039311 G T CCDC40 Missense_Mutation p.V490L 0.21 tolerated(0.27) benign(0.002) TCGA-A3-A6NJ-01 18 29496245 29496245 C A TRAPPC8 Missense_Mutation p.D203Y 0.16 deleterious(0) probably_damaging(0.943) TCGA-A3-A6NJ-01 18 9104964 9104965 AC - NDUFV2 Intron 0.12 TCGA-A3-A6NJ-01 19 10398214 10398214 C A ICAM4 Intron 0.19 TCGA-A3-A6NJ-01 19 10398215 10398215 C T ICAM4 Intron 0.19 TCGA-A3-A6NJ-01 19 10748973 10748973 T A SLC44A2 Nonsense_Mutation p.Y637* 0.08 TCGA-A3-A6NJ-01 19 12989358 12989358 T C DNASE2 Missense_Mutation p.N183D 0.10 tolerated(1) benign(0) TCGA-A3-A6NJ-01 19 2254294 2254295 GA - JSRP1 Frame_Shift_Del p.Q52Gfs*3 0.19 TCGA-A3-A6NJ-01 19 37310121 37310121 A - ZNF790 Frame_Shift_Del p.F375Lfs*278 0.16 TCGA-A3-A6NJ-01 19 37853250 37853250 G A HKR1 Missense_Mutation p.G185R 0.27 tolerated(0.27) benign(0.01) TCGA-A3-A6NJ-01 19 54313461 54313461 G A NLRP12 Silent p.H484H 0.12 TCGA-A3-A6NJ-01 1 155452045 155452045 C A ASH1L Missense_Mutation p.D206Y 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A3-A6NJ-01 1 17312542 17312542 G A ATP13A2 3'UTR 0.08 TCGA-A3-A6NJ-01 1 24483558 24483573 AGCCCAGTAGTCCTTG - IFNLR1 3'UTR 0.10 TCGA-A3-A6NJ-01 1 248436464 248436464 A G OR2T33 Missense_Mutation p.L218P 0.18 tolerated(0.12) probably_damaging(0.994) TCGA-A3-A6NJ-01 21 32537358 32537358 C T TIAM1 Missense_Mutation p.G971D 0.09 tolerated(1) benign(0) TCGA-A3-A6NJ-01 22 20458596 20458596 G A RIMBP3 Silent p.I902I 0.09 TCGA-A3-A6NJ-01 2 172300097 172300097 G T DCAF17 Missense_Mutation p.D99Y 0.17 deleterious(0.01) benign(0.028) TCGA-A3-A6NJ-01 2 212285191 212285191 G C ERBB4 Missense_Mutation p.S1037C 0.16 tolerated(0.07) possibly_damaging(0.662) TCGA-A3-A6NJ-01 2 27261933 27261933 C T TMEM214 Nonsense_Mutation p.Q476* 0.12 TCGA-A3-A6NJ-01 2 9658246 9658246 C G ADAM17 Missense_Mutation p.G363A 0.20 deleterious(0) probably_damaging(1) TCGA-A3-A6NJ-01 3 193855522 193855522 A G HES1 Missense_Mutation p.S115G 0.08 tolerated(0.08) benign(0.038) TCGA-A3-A6NJ-01 3 197670923 197670923 C G IQCG Splice_Site p.X3_splice 0.11 TCGA-A3-A6NJ-01 3 52610601 52610602 - AT PBRM1 Frame_Shift_Ins p.F1191Yfs*3 0.13 TCGA-A3-A6NJ-01 4 106290842 106290842 A T PPA2 3'UTR 0.26 TCGA-A3-A6NJ-01 4 185329347 185329347 A T IRF2 Missense_Mutation p.I165K 0.24 tolerated(0.13) possibly_damaging(0.694) TCGA-A3-A6NJ-01 4 185329349 185329349 A T IRF2 Silent p.T164T 0.24 TCGA-A3-A6NJ-01 4 54325681 54325681 C A FIP1L1 3'UTR 0.22 TCGA-A3-A6NJ-01 4 8098895 8098895 A G ABLIM2 Missense_Mutation p.I90T 0.11 deleterious(0) probably_damaging(0.999) TCGA-A3-A6NJ-01 5 138269631 138269633 ATG - CTNNA1 In_Frame_Del p.W859del 0.22 TCGA-A3-A6NJ-01 5 140768821 140768822 - C PCDHGB4 Frame_Shift_Ins p.H458Pfs*19 0.08 TCGA-A3-A6NJ-01 5 74326412 74326412 C A GCNT4 5'UTR 0.17 TCGA-A3-A6NJ-01 5 7802384 7802384 G A ADCY2 Silent p.P894P 0.12 TCGA-A3-A6NJ-01 6 35987486 35987486 C G SLC26A8 Intron 0.08 TCGA-A3-A6NJ-01 6 56330885 56330885 G A DST Missense_Mutation p.P4937S 0.20 probably_damaging(0.999) TCGA-A3-A6NJ-01 6 83847049 83847049 T A DOPEY1 Missense_Mutation p.F1096L 0.20 deleterious_low_confidence(0.03) benign(0.065) TCGA-A3-A6NJ-01 7 136699748 136699748 G T CHRM2 Missense_Mutation p.V46F 0.13 deleterious(0.03) benign(0.315) TCGA-A3-A6NJ-01 8 15397945 15397945 G T TUSC3 Silent p.G2G 0.24 TCGA-A3-A6NJ-01 8 65495197 65495197 G A BHLHE22 3'UTR 0.18 TCGA-A3-A6NJ-01 8 82751936 82751936 G A SNX16 Nonsense_Mutation p.Q96* 0.33 TCGA-A3-A6NJ-01 8 99101367 99101367 C A C8orf47 Missense_Mutation p.P41Q 0.12 deleterious(0) probably_damaging(0.972) TCGA-A3-A6NJ-01 9 129595670 129595670 G C ZBTB43 Silent p.G294G 0.10 TCGA-A3-A6NJ-01 9 139694929 139694929 T A CCDC183 Missense_Mutation p.L176Q 0.17 tolerated(0.24) probably_damaging(0.995) TCGA-A3-A6NJ-01 X 135428984 135428984 C A GPR112 Missense_Mutation p.A1040D 0.16 deleterious(0.02) possibly_damaging(0.451) TCGA-A3-A6NJ-01 X 84349181 84349181 C T SATL1 Missense_Mutation p.G610D 0.06 deleterious(0) probably_damaging(0.997) TCGA-A3-A6NL-01 10 112581288 112581288 A T RBM20 Missense_Mutation p.N971Y 0.31 deleterious(0.01) possibly_damaging(0.701) TCGA-A3-A6NL-01 10 91163270 91163273 TAAC AAA IFIT1 Nonsense_Mutation p.L413* 0.17 TCGA-A3-A6NL-01 11 111369521 111369521 A T BTG4 5'UTR 0.21 TCGA-A3-A6NL-01 11 117186380 117186380 G A BACE1 Silent p.P44P 0.29 TCGA-A3-A6NL-01 11 118963868 118963868 C T HMBS Missense_Mutation p.R321C 0.08 tolerated(0.06) benign(0.013) TCGA-A3-A6NL-01 11 48347123 48347123 G A OR4C3 Missense_Mutation p.E211K 0.09 tolerated(1) possibly_damaging(0.762) TCGA-A3-A6NL-01 11 65650765 65650765 G C CTSW Missense_Mutation p.G297A 0.28 deleterious(0) probably_damaging(1) TCGA-A3-A6NL-01 11 9530234 9530234 A T ZNF143 Nonsense_Mutation p.K406* 0.27 TCGA-A3-A6NL-01 12 112228342 112228342 C G ALDH2 Silent p.L219L 0.24 TCGA-A3-A6NL-01 12 13366680 13366680 G C EMP1 Missense_Mutation p.V81L 0.16 tolerated(0.26) benign(0.022) TCGA-A3-A6NL-01 13 78335150 78335150 T C SLAIN1 Silent p.A370A 0.24 TCGA-A3-A6NL-01 13 96743622 96743622 T C HS6ST3 Missense_Mutation p.I169T 0.31 tolerated(0.08) probably_damaging(0.999) TCGA-A3-A6NL-01 14 24801851 24801851 G A RP11-934B9.3 Missense_Mutation p.H199Y 0.34 deleterious_low_confidence(0) unknown(0) TCGA-A3-A6NL-01 14 75508387 75508387 A G MLH3 Silent p.T1132T 0.21 TCGA-A3-A6NL-01 15 34356723 34356723 G A CHRM5 3'UTR 0.10 TCGA-A3-A6NL-01 15 42442869 42442869 G A PLA2G4F Silent p.H236H 0.24 TCGA-A3-A6NL-01 16 1397586 1397586 G A BAIAP3 Missense_Mutation p.R990H 0.21 tolerated(0.32) probably_damaging(0.995) TCGA-A3-A6NL-01 16 1507316 1507316 C A CLCN7 Missense_Mutation p.G254V 0.25 deleterious(0) probably_damaging(1) TCGA-A3-A6NL-01 17 79256031 79256031 G A SLC38A10 Silent p.F153F 0.15 TCGA-A3-A6NL-01 19 18391353 18391353 C T JUND Silent p.A314A 0.08 TCGA-A3-A6NL-01 19 36233474 36233474 G A U2AF1L4 3'UTR 0.30 TCGA-A3-A6NL-01 19 44235761 44235761 C T SMG9 Missense_Mutation p.R517H 0.17 deleterious(0) probably_damaging(0.998) TCGA-A3-A6NL-01 19 44418472 44418472 A T ZNF45 Silent p.G372G 0.17 TCGA-A3-A6NL-01 1 147380851 147380851 G C GJA8 Missense_Mutation p.V257L 0.17 tolerated(0.08) benign(0.049) TCGA-A3-A6NL-01 1 150064490 150064490 T G VPS45 Missense_Mutation p.L453R 0.07 tolerated(0.05) possibly_damaging(0.579) TCGA-A3-A6NL-01 1 152128065 152128065 C T RPTN Missense_Mutation p.G504R 0.28 tolerated(1) benign(0) TCGA-A3-A6NL-01 1 237780620 237780620 A C RYR2 Missense_Mutation p.Q1917P 0.25 possibly_damaging(0.885) TCGA-A3-A6NL-01 1 29314246 29314246 C G EPB41 Silent p.G99G 0.18 TCGA-A3-A6NL-01 1 53245547 53245547 C A ZYG11B Missense_Mutation p.T325N 0.20 tolerated(0.68) benign(0.439) TCGA-A3-A6NL-01 1 60073506 60073506 T A FGGY Missense_Mutation p.V312D 0.31 deleterious(0) probably_damaging(0.951) TCGA-A3-A6NL-01 1 60073507 60073507 C G FGGY Silent p.V312V 0.31 TCGA-A3-A6NL-01 21 41725452 41725452 C G DSCAM Missense_Mutation p.V292L 0.19 tolerated(0.3) possibly_damaging(0.596) TCGA-A3-A6NL-01 22 41169985 41169985 C T SLC25A17 Silent p.L244L 0.19 TCGA-A3-A6NL-01 22 50682636 50682636 T G TUBGCP6 Missense_Mutation p.K85Q 0.19 tolerated(0.14) benign(0.004) TCGA-A3-A6NL-01 2 37319112 37319112 T C GPATCH11 Silent p.L124L 0.07 TCGA-A3-A6NL-01 2 86364158 86364158 C G PTCD3 Missense_Mutation p.S625C 0.27 deleterious(0.04) possibly_damaging(0.474) TCGA-A3-A6NL-01 3 123018995 123018995 C T ADCY5 Missense_Mutation p.A958T 0.12 tolerated(0.35) benign(0.206) TCGA-A3-A6NL-01 3 125208287 125208287 C T SNX4 Silent p.A206A 0.21 TCGA-A3-A6NL-01 4 135121074 135121074 G T PABPC4L Silent p.A425A 0.23 TCGA-A3-A6NL-01 4 16172347 16172347 G C TAPT1 Missense_Mutation p.I414M 0.27 tolerated(0.07) benign(0.351) TCGA-A3-A6NL-01 4 187205306 187205306 G A F11 Nonsense_Mutation p.W399* 0.40 TCGA-A3-A6NL-01 4 2065543 2065543 C T NAT8L Missense_Mutation p.R200W 0.25 tolerated(0.14) probably_damaging(0.978) TCGA-A3-A6NL-01 4 73179472 73179472 G T ADAMTS3 Nonsense_Mutation p.S556* 0.19 TCGA-A3-A6NL-01 4 875701 875701 T A GAK Missense_Mutation p.H552L 0.08 deleterious(0) probably_damaging(0.996) TCGA-A3-A6NL-01 5 178155988 178155988 C T ZNF354A Intron 0.12 TCGA-A3-A6NL-01 5 33588906 33588906 G A ADAMTS12 Missense_Mutation p.A888V 0.08 tolerated(0.55) benign(0.226) TCGA-A3-A6NL-01 6 144876009 144876009 A T UTRN Nonsense_Mutation p.K2372* 0.16 TCGA-A3-A6NL-01 6 157743807 157743807 G T TMEM242 Missense_Mutation p.A40E 0.27 deleterious(0.01) probably_damaging(0.927) TCGA-A3-A6NL-01 6 157743808 157743808 C T TMEM242 Missense_Mutation p.A40T 0.28 tolerated(0.14) benign(0.301) TCGA-A3-A6NL-01 6 32942296 32942296 A G BRD2 Silent p.P29P 0.20 TCGA-A3-A6NL-01 7 128529002 128529002 G A KCP RNA 0.08 TCGA-A3-A6NL-01 7 138305790 138305790 C T SVOPL Splice_Site p.X451_splice 0.17 TCGA-A3-A6NL-01 7 150706534 150706534 G A NOS3 Silent p.L791L 0.10 TCGA-A3-A6NL-01 7 94989347 94989347 C G PON3 Missense_Mutation p.V335L 0.17 tolerated(0.06) benign(0.002) TCGA-A3-A6NL-01 9 136444220 136444220 T C FAM163B Missense_Mutation p.Q142R 0.19 deleterious(0.05) probably_damaging(0.996) TCGA-A3-A6NL-01 X 129263459 129263459 A - AIFM1 3'UTR 0.22 TCGA-A3-A6NN-01 10 26501010 26501010 G A MYO3A 3'UTR 0.12 TCGA-A3-A6NN-01 10 28233852 28233852 T C ARMC4 Missense_Mutation p.M476V 0.06 deleterious(0) benign(0.133) TCGA-A3-A6NN-01 11 101765752 101765752 A C ANGPTL5 Missense_Mutation p.N235K 0.28 tolerated(0.22) probably_damaging(1) TCGA-A3-A6NN-01 11 107920706 107920706 A T CUL5 Silent p.P108P 0.29 TCGA-A3-A6NN-01 11 108139224 108139224 C T ATM Missense_Mutation p.T909I 0.21 deleterious(0) possibly_damaging(0.855) TCGA-A3-A6NN-01 11 118981356 118981356 C T C2CD2L Missense_Mutation p.T179I 0.27 deleterious(0.01) probably_damaging(0.96) TCGA-A3-A6NN-01 11 32954471 32954471 C A QSER1 Nonsense_Mutation p.S427* 0.42 TCGA-A3-A6NN-01 11 34937881 34937881 C T APIP 5'UTR 0.34 TCGA-A3-A6NN-01 11 47297598 47297600 GAG - MADD In_Frame_Del p.E270del 0.09 TCGA-A3-A6NN-01 11 47660258 47660258 A T MTCH2 Missense_Mutation p.V91D 0.32 deleterious(0) possibly_damaging(0.646) TCGA-A3-A6NN-01 11 56949483 56949483 G A LRRC55 Missense_Mutation p.C39Y 0.30 tolerated_low_confidence(0.05) benign(0.025) TCGA-A3-A6NN-01 11 6023325 6023325 T A OR56A4 Nonsense_Mutation p.K352* 0.24 TCGA-A3-A6NN-01 11 6023332 6023332 C G OR56A4 Silent p.V349V 0.26 TCGA-A3-A6NN-01 11 65057326 65057326 T A POLA2 Silent p.I409I 0.26 TCGA-A3-A6NN-01 12 124181723 124181723 A - TCTN2 Frame_Shift_Del p.N495Mfs*18 0.18 TCGA-A3-A6NN-01 12 133151145 133151145 A T FBRSL1 Missense_Mutation p.I609L 0.09 tolerated(0.08) benign(0.013) TCGA-A3-A6NN-01 12 38714428 38714428 C G ALG10B Missense_Mutation p.R279G 0.14 deleterious(0) probably_damaging(0.997) TCGA-A3-A6NN-01 12 49484013 49484013 A T DHH Missense_Mutation p.F274I 0.31 deleterious(0) probably_damaging(0.99) TCGA-A3-A6NN-01 12 54928965 54928965 T C NCKAP1L Silent p.I980I 0.32 TCGA-A3-A6NN-01 12 57689216 57689216 C G R3HDM2 Missense_Mutation p.R259T 0.26 deleterious(0) probably_damaging(0.998) TCGA-A3-A6NN-01 12 6559739 6559739 C T CD27 Nonsense_Mutation p.Q161* 0.24 TCGA-A3-A6NN-01 12 6953035 6953035 C A GNB3 Missense_Mutation p.L198I 0.26 tolerated(0.35) benign(0.017) TCGA-A3-A6NN-01 13 36046535 36046536 AG - NBEA Splice_Site p.X2150_splice 0.20 TCGA-A3-A6NN-01 13 39454711 39454711 C T FREM2 Silent p.P3099P 0.24 TCGA-A3-A6NN-01 13 47345569 47345569 A C ESD Silent p.A277A 0.33 TCGA-A3-A6NN-01 13 51854769 51854769 C T FAM124A Nonsense_Mutation p.Q376* 0.25 TCGA-A3-A6NN-01 13 79929414 79929414 T A RBM26 Missense_Mutation p.I599F 0.21 deleterious(0) probably_damaging(0.998) TCGA-A3-A6NN-01 14 57272195 57272195 C A OTX2 5'UTR 0.19 TCGA-A3-A6NN-01 14 64557584 64557584 G C SYNE2 Missense_Mutation p.V3932L 0.28 probably_damaging(0.997) TCGA-A3-A6NN-01 15 56393628 56393628 A G RFX7 Missense_Mutation p.F247S 0.40 deleterious(0) probably_damaging(0.999) TCGA-A3-A6NN-01 15 79588152 79588152 T C ANKRD34C 3'UTR 0.17 TCGA-A3-A6NN-01 16 16364032 16364032 C A NOMO3 Missense_Mutation p.T650N 0.09 deleterious(0.03) probably_damaging(0.94) TCGA-A3-A6NN-01 16 1878209 1878209 G C FAHD1 Intron 0.37 TCGA-A3-A6NN-01 16 23716268 23716268 G C ERN2 Missense_Mutation p.R312G 0.09 deleterious(0.03) possibly_damaging(0.631) TCGA-A3-A6NN-01 16 31286956 31286956 G T ITGAM Silent p.V315V 0.38 TCGA-A3-A6NN-01 17 19683816 19683816 T C ULK2 Missense_Mutation p.E962G 0.28 deleterious(0) probably_damaging(0.999) TCGA-A3-A6NN-01 17 29588752 29588752 G - NF1 Frame_Shift_Del p.R1534Hfs*40 0.25 TCGA-A3-A6NN-01 17 37427106 37427106 T C FBXL20 Missense_Mutation p.I277M 0.24 deleterious(0.04) benign(0.416) TCGA-A3-A6NN-01 17 40266292 40266292 A G KAT2A Missense_Mutation p.L727P 0.09 tolerated(0.28) benign(0.001) TCGA-A3-A6NN-01 17 45673820 45673822 GCT - NPEPPS In_Frame_Del p.A510del 0.35 TCGA-A3-A6NN-01 17 4798664 4798664 C A MINK1 Silent p.G1035G 0.25 TCGA-A3-A6NN-01 17 5329389 5329390 - T RPAIN Frame_Shift_Ins p.P138Lfs*29 0.24 TCGA-A3-A6NN-01 17 63553937 63553937 C A AXIN2 Missense_Mutation p.D268Y 0.36 deleterious(0.02) benign(0.353) TCGA-A3-A6NN-01 17 67178431 67178431 C T ABCA10 Missense_Mutation p.D878N 0.21 tolerated(0.52) benign(0.05) TCGA-A3-A6NN-01 17 73775256 73775256 T A H3F3B 5'UTR 0.22 TCGA-A3-A6NN-01 17 74087312 74087312 C T EXOC7 Silent p.T271T 0.08 TCGA-A3-A6NN-01 18 19996138 19996138 G C CTAGE1 Nonsense_Mutation p.S546* 0.23 TCGA-A3-A6NN-01 18 40854057 40854057 C T SYT4 Missense_Mutation p.G113S 0.08 tolerated(0.88) benign(0.013) TCGA-A3-A6NN-01 18 40854058 40854058 A G SYT4 Silent p.P112P 0.08 TCGA-A3-A6NN-01 18 52544862 52544862 G A RAB27B Missense_Mutation p.G16R 0.18 deleterious(0) probably_damaging(1) TCGA-A3-A6NN-01 19 10748752 10748752 T A SLC44A2 Missense_Mutation p.L608Q 0.23 deleterious(0) probably_damaging(0.99) TCGA-A3-A6NN-01 19 17622645 17622645 C T PGLS Missense_Mutation p.A55V 0.33 deleterious(0.05) possibly_damaging(0.881) TCGA-A3-A6NN-01 19 36380805 36380805 G C NFKBID Missense_Mutation p.P292R 0.32 deleterious(0.03) possibly_damaging(0.586) TCGA-A3-A6NN-01 19 38876962 38876962 C T GGN Missense_Mutation p.G314R 0.30 deleterious_low_confidence(0) unknown(0) TCGA-A3-A6NN-01 19 46974237 46974237 A C PNMAL1 Missense_Mutation p.V19G 0.35 deleterious(0.01) possibly_damaging(0.504) TCGA-A3-A6NN-01 19 6904185 6904185 G C EMR1 Missense_Mutation p.S314T 0.11 tolerated(0.21) benign(0.259) TCGA-A3-A6NN-01 19 9048033 9048033 C T MUC16 Missense_Mutation p.V11200I 0.27 benign(0.048) TCGA-A3-A6NN-01 1 110170065 110170065 A T AMPD2 Missense_Mutation p.E346V 0.44 tolerated(0.12) benign(0.191) TCGA-A3-A6NN-01 1 11298606 11298606 G A MTOR Missense_Mutation p.R619C 0.04 deleterious(0) probably_damaging(0.996) TCGA-A3-A6NN-01 1 162351727 162351727 G T RP11-565P22.6 Missense_Mutation p.K121N 0.32 deleterious(0.02) possibly_damaging(0.847) TCGA-A3-A6NN-01 1 186280172 186280172 A T PRG4 Missense_Mutation p.Y1169F 0.39 unknown(0) TCGA-A3-A6NN-01 1 207105098 207105098 G C PIGR Missense_Mutation p.F686L 0.09 tolerated(0.47) benign(0.018) TCGA-A3-A6NN-01 1 211836902 211836902 T C NEK2 Missense_Mutation p.S402G 0.27 tolerated_low_confidence(0.43) benign(0.002) TCGA-A3-A6NN-01 1 235498640 235498640 C A GGPS1 Missense_Mutation p.Q21K 0.14 tolerated(0.28) benign(0.019) TCGA-A3-A6NN-01 1 236990170 236990170 C T MTR Silent p.C323C 0.07 TCGA-A3-A6NN-01 1 38155363 38155363 G T C1orf109 Silent p.R64R 0.25 TCGA-A3-A6NN-01 1 52248284 52248284 T A OSBPL9 Missense_Mutation p.F504L 0.27 deleterious(0) possibly_damaging(0.777) TCGA-A3-A6NN-01 20 43057037 43057037 A G HNF4A Missense_Mutation p.M398V 0.27 tolerated(0.32) benign(0.014) TCGA-A3-A6NN-01 21 40834356 40834356 T C SH3BGR Missense_Mutation p.F97S 0.36 deleterious(0.01) possibly_damaging(0.842) TCGA-A3-A6NN-01 22 30899692 30899692 A C SEC14L4 Missense_Mutation p.D34E 0.22 deleterious(0) possibly_damaging(0.718) TCGA-A3-A6NN-01 22 36055100 36055100 T C APOL6 Silent p.Y163Y 0.16 TCGA-A3-A6NN-01 22 39710756 39710756 C T RPL3 Missense_Mutation p.V262I 0.27 deleterious(0.03) benign(0.136) TCGA-A3-A6NN-01 22 43435856 43435856 G T TTLL1 Missense_Mutation p.Q400K 0.20 tolerated(0.93) benign(0) TCGA-A3-A6NN-01 2 160980361 160980361 G T ITGB6 Missense_Mutation p.A641D 0.12 tolerated(0.22) benign(0.001) TCGA-A3-A6NN-01 2 162087918 162087918 C A TANK Silent p.I319I 0.22 TCGA-A3-A6NN-01 2 170163902 170163902 T G LRP2 Missense_Mutation p.S106R 0.32 benign(0.004) TCGA-A3-A6NN-01 2 204009535 204009535 T G NBEAL1 Silent p.P1658P 0.28 TCGA-A3-A6NN-01 2 215848509 215848509 G A ABCA12 Missense_Mutation p.T1415M 0.41 tolerated(0.1) benign(0.276) TCGA-A3-A6NN-01 2 219513847 219513847 A C ZNF142 Missense_Mutation p.F262V 0.30 deleterious(0) possibly_damaging(0.637) TCGA-A3-A6NN-01 2 230634039 230634039 C T TRIP12 Silent p.L1862L 0.29 TCGA-A3-A6NN-01 2 239155013 239155013 G C PER2 3'UTR 0.07 TCGA-A3-A6NN-01 2 32724668 32724668 A T BIRC6 Missense_Mutation p.E2841D 0.19 benign(0.015) TCGA-A3-A6NN-01 2 37454753 37454753 A C CEBPZ Missense_Mutation p.M528R 0.33 deleterious(0) probably_damaging(0.999) TCGA-A3-A6NN-01 2 90193310 90193310 G T IGKV1D-13 Silent p.G79G 0.29 TCGA-A3-A6NN-01 2 99978029 99978029 C T EIF5B Missense_Mutation p.S222F 0.27 benign(0.184) TCGA-A3-A6NN-01 3 122134837 122134837 A G WDR5B 5'UTR 0.52 TCGA-A3-A6NN-01 3 142762026 142762026 T A U2SURP Missense_Mutation p.S818T 0.46 tolerated(0.2) benign(0.272) TCGA-A3-A6NN-01 3 4741547 4741550 GTAT - ITPR1 Frame_Shift_Del p.Y1472Sfs*6 0.35 TCGA-A3-A6NN-01 3 48681694 48681694 G A CELSR3 Missense_Mutation p.T2707I 0.37 tolerated(0.15) benign(0.001) TCGA-A3-A6NN-01 3 51378805 51378809 AACAA - DOCK3 Frame_Shift_Del p.N1302Rfs*23 0.20 TCGA-A3-A6NN-01 3 52637589 52637589 T - PBRM1 Frame_Shift_Del p.K909Nfs*6 0.26 TCGA-A3-A6NN-01 3 64142915 64142915 A C PRICKLE2 Missense_Mutation p.F175V 0.06 deleterious(0) probably_damaging(0.99) TCGA-A3-A6NN-01 4 104081816 104081816 G A CENPE Missense_Mutation p.S751F 0.26 possibly_damaging(0.907) TCGA-A3-A6NN-01 4 106858183 106858183 C A NPNT Missense_Mutation p.L125M 0.33 deleterious(0) possibly_damaging(0.876) TCGA-A3-A6NN-01 4 128949794 128949794 C T C4orf29 Silent p.V288V 0.24 TCGA-A3-A6NN-01 4 99355170 99355170 T G RAP1GDS1 Missense_Mutation p.N509K 0.12 deleterious(0) probably_damaging(0.969) TCGA-A3-A6NN-01 5 140167195 140167195 G T PCDHA1 Missense_Mutation p.R440S 0.40 tolerated_low_confidence(1) benign(0.001) TCGA-A3-A6NN-01 5 141233499 141233499 C T PCDH1 3'UTR 0.28 TCGA-A3-A6NN-01 5 149914522 149914522 A T NDST1 Missense_Mutation p.H397L 0.43 deleterious(0) probably_damaging(0.98) TCGA-A3-A6NN-01 5 153766148 153766148 A G GALNT10 Intron 0.38 TCGA-A3-A6NN-01 5 158500470 158500470 C T EBF1 Missense_Mutation p.R163H 0.23 deleterious(0) probably_damaging(0.969) TCGA-A3-A6NN-01 5 180219476 180219476 C T MGAT1 Missense_Mutation p.D166N 0.12 benign(0.076) TCGA-A3-A6NN-01 6 144808778 144808779 - A UTRN Frame_Shift_Ins p.I1307Nfs*3 0.23 TCGA-A3-A6NN-01 6 31924495 31924495 G C NELFE Missense_Mutation p.S89C 0.27 deleterious(0) probably_damaging(0.979) TCGA-A3-A6NN-01 6 33543199 33543199 G A BAK1 Missense_Mutation p.R76W 0.06 deleterious(0) probably_damaging(0.986) TCGA-A3-A6NN-01 6 42141477 42141477 C A GUCA1A Missense_Mutation p.F42L 0.31 tolerated(0.66) benign(0.029) TCGA-A3-A6NN-01 6 52103544 52103544 A G IL17F Missense_Mutation p.S80P 0.05 deleterious(0) probably_damaging(0.997) TCGA-A3-A6NN-01 6 52381503 52381508 TAGGGC - TRAM2 In_Frame_Del p.G71_K73delinsE 0.10 TCGA-A3-A6NN-01 6 90513090 90513090 C G MDN1 Missense_Mutation p.V96L 0.20 benign(0.14) TCGA-A3-A6NN-01 6 90578503 90578503 T A CASP8AP2 RNA 0.25 TCGA-A3-A6NN-01 7 107423691 107423691 C T SLC26A3 Missense_Mutation p.V360I 0.07 tolerated(0.19) probably_damaging(0.999) TCGA-A3-A6NN-01 7 134882830 134882830 T G WDR91 Missense_Mutation p.E322A 0.31 tolerated(0.13) possibly_damaging(0.627) TCGA-A3-A6NN-01 7 138764777 138764777 C G ZC3HAV1 Missense_Mutation p.D304H 0.28 tolerated(0.1) possibly_damaging(0.52) TCGA-A3-A6NN-01 7 150840457 150840457 A G AGAP3 Missense_Mutation p.K768R 0.24 deleterious(0) probably_damaging(0.999) TCGA-A3-A6NN-01 7 76829022 76829022 A G FGL2 Missense_Mutation p.I30T 0.16 tolerated(0.08) benign(0.001) TCGA-A3-A6NN-01 7 99630960 99630960 A G ZKSCAN1 Missense_Mutation p.T278A 0.24 tolerated(0.96) benign(0.002) TCGA-A3-A6NN-01 8 12880009 12880009 G T KIAA1456 3'UTR 0.05 TCGA-A3-A6NN-01 8 17142087 17142087 A G VPS37A Missense_Mutation p.I359V 0.39 tolerated(0.54) benign(0.007) TCGA-A3-A6NN-01 8 19796874 19796874 G A LPL 5'UTR 0.44 TCGA-A3-A6NN-01 8 86039034 86039034 A C LRRCC1 Missense_Mutation p.K461N 0.38 deleterious(0.02) benign(0.231) TCGA-A3-A6NN-01 8 99441573 99441573 A C KCNS2 Missense_Mutation p.M456L 0.23 tolerated(0.51) possibly_damaging(0.558) TCGA-A3-A6NN-01 9 115651904 115651904 A T SLC46A2 Missense_Mutation p.I353N 0.16 deleterious(0) probably_damaging(1) TCGA-A3-A6NN-01 9 116155898 116155898 T C ALAD 5'UTR 0.11 TCGA-A3-A6NN-01 9 130476279 130476279 A G PTRH1 3'UTR 0.25 TCGA-A3-A6NN-01 9 140099708 140099709 - A TMEM203 Frame_Shift_Ins p.F54Lfs*4 0.09 TCGA-A3-A6NN-01 9 67785994 67785994 C G FAM27E3 Missense_Mutation p.Q87H 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-A3-A6NN-01 9 74863496 74863496 C G GDA Intron 0.50 TCGA-A3-A6NN-01 X 100533083 100533083 A G TAF7L Silent p.N263N 0.65 TCGA-A3-A6NN-01 X 142716512 142716512 C A SLITRK4 Nonsense_Mutation p.E805* 0.12 TCGA-A3-A6NN-01 X 153631947 153631947 C T DNASE1L1 Missense_Mutation p.V110I 0.08 tolerated(0.1) benign(0.26) TCGA-A3-A6NN-01 X 32360350 32360350 C T DMD Missense_Mutation p.R1930H 0.11 benign(0) TCGA-A3-A8CQ-01 10 81063885 81063885 C T ZMIZ1 Missense_Mutation p.R747W 0.06 probably_damaging(0.998) TCGA-A3-A8CQ-01 11 117857321 117857321 G C IL10RA Intron 0.25 TCGA-A3-A8CQ-01 11 64684453 64684453 A C ATG2A Missense_Mutation p.I52S 0.43 deleterious(0) probably_damaging(1) TCGA-A3-A8CQ-01 11 66358879 66358879 T G CCDC87 Missense_Mutation p.K536N 0.26 tolerated(0.09) benign(0.002) TCGA-A3-A8CQ-01 12 6749364 6749364 G A ACRBP Silent p.Y429Y 0.06 TCGA-A3-A8CQ-01 12 89742930 89742930 G A DUSP6 3'UTR 0.25 TCGA-A3-A8CQ-01 13 32950833 32950833 T A BRCA2 Missense_Mutation p.S2887T 0.33 deleterious(0.01) possibly_damaging(0.763) TCGA-A3-A8CQ-01 13 37401833 37401833 A G RFXAP Silent p.L254L 0.28 TCGA-A3-A8CQ-01 14 70712668 70712668 G A ADAM21P1 RNA 0.03 TCGA-A3-A8CQ-01 14 74972810 74972810 G A LTBP2 Missense_Mutation p.A1373V 0.05 tolerated(0.09) benign(0.072) TCGA-A3-A8CQ-01 15 42046727 42046727 G A MGA Silent p.L2367L 0.31 TCGA-A3-A8CQ-01 16 10631803 10631803 T C EMP2 Missense_Mutation p.I100V 0.29 tolerated(0.42) benign(0.046) TCGA-A3-A8CQ-01 16 15853516 15853516 C T MYH11 Missense_Mutation p.V447M 0.27 probably_damaging(1) TCGA-A3-A8CQ-01 16 30751228 30751228 G A SRCAP 3'UTR 0.62 TCGA-A3-A8CQ-01 17 1637213 1637213 A C WDR81 Missense_Mutation p.S1628R 0.36 deleterious(0.01) possibly_damaging(0.771) TCGA-A3-A8CQ-01 17 41352188 41352188 A G NBR1 Silent p.T677T 0.30 TCGA-A3-A8CQ-01 17 42386199 42386199 G A RUNDC3A 5'UTR 0.34 TCGA-A3-A8CQ-01 17 61888526 61888526 T - DDX42 Frame_Shift_Del p.I464Mfs*8 0.23 TCGA-A3-A8CQ-01 17 62084079 62084079 G T ICAM2 5'UTR 0.33 TCGA-A3-A8CQ-01 19 1122551 1122551 G A SBNO2 Silent p.S307S 0.34 TCGA-A3-A8CQ-01 19 1122552 1122552 C T SBNO2 Missense_Mutation p.S307N 0.34 deleterious(0) probably_damaging(0.998) TCGA-A3-A8CQ-01 19 36247764 36247764 G A HSPB6 Missense_Mutation p.T49M 0.29 tolerated(0.09) benign(0.327) TCGA-A3-A8CQ-01 19 40711979 40711979 C T MAP3K10 Silent p.P450P 0.27 TCGA-A3-A8CQ-01 19 43672221 43672221 G T PSG5 Intron 0.35 TCGA-A3-A8CQ-01 19 55496497 55496497 G C NLRP2 Missense_Mutation p.A705P 0.04 deleterious(0.01) benign(0.002) TCGA-A3-A8CQ-01 19 56443517 56443517 C T NLRP13 Missense_Mutation p.R54H 0.25 tolerated(0.16) benign(0.001) TCGA-A3-A8CQ-01 19 8154803 8154803 G T FBN3 Silent p.V2075V 0.35 TCGA-A3-A8CQ-01 1 151503024 151503024 G C CGN Silent p.L791L 0.32 TCGA-A3-A8CQ-01 1 169699599 169699599 C T SELE Nonsense_Mutation p.W230* 0.26 TCGA-A3-A8CQ-01 1 196709746 196709746 T C CFH Intron 0.32 TCGA-A3-A8CQ-01 1 227954701 227954701 G A SNAP47 Missense_Mutation p.A389T 0.34 tolerated(0.27) benign(0.001) TCGA-A3-A8CQ-01 1 240656274 240656274 G C GREM2 Missense_Mutation p.Q168E 0.35 deleterious_low_confidence(0.01) benign(0.004) TCGA-A3-A8CQ-01 1 65348957 65348957 C T JAK1 Intron 0.27 TCGA-A3-A8CQ-01 2 120005542 120005542 G A STEAP3 Silent p.P270P 0.31 TCGA-A3-A8CQ-01 2 131803077 131803077 T G ARHGEF4 Intron 0.23 TCGA-A3-A8CQ-01 2 168103110 168103110 T C XIRP2 Silent p.D1736D 0.43 TCGA-A3-A8CQ-01 2 1844537 1844537 G - MYT1L Frame_Shift_Del p.I950Sfs*39 0.17 TCGA-A3-A8CQ-01 2 196642570 196642570 T C DNAH7 Missense_Mutation p.Y3673C 0.26 deleterious(0.01) possibly_damaging(0.628) TCGA-A3-A8CQ-01 3 140785050 140785050 C T SPSB4 Missense_Mutation p.A35V 0.30 tolerated(0.26) benign(0.002) TCGA-A3-A8CQ-01 3 180362026 180362026 T C CCDC39 Missense_Mutation p.K516R 0.27 tolerated(0.21) benign(0.015) TCGA-A3-A8CQ-01 4 152682007 152682007 C G PET112 Missense_Mutation p.S43T 0.26 tolerated_low_confidence(0.21) benign(0.002) TCGA-A3-A8CQ-01 4 162680600 162680600 G A FSTL5 Silent p.D230D 0.35 TCGA-A3-A8CQ-01 4 44652112 44652112 T G YIPF7 Silent p.S26S 0.30 TCGA-A3-A8CQ-01 4 68928462 68928462 A G TMPRSS11F Intron 0.03 TCGA-A3-A8CQ-01 4 74005800 74005800 T C ANKRD17 Missense_Mutation p.K845E 0.31 benign(0.355) TCGA-A3-A8CQ-01 4 9828139 9828139 G T SLC2A9 Missense_Mutation p.T502N 0.26 deleterious(0) probably_damaging(1) TCGA-A3-A8CQ-01 5 102340865 102340865 T - PAM Frame_Shift_Del p.L580Cfs*5 0.22 TCGA-A3-A8CQ-01 5 112824066 112824066 C T MCC Missense_Mutation p.G16S 0.07 unknown(0) TCGA-A3-A8CQ-01 5 137713507 137713507 C T KDM3B Silent p.F191F 0.26 TCGA-A3-A8CQ-01 5 54563649 54563649 G T DHX29 Missense_Mutation p.A1099E 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-A3-A8CQ-01 5 64766869 64766869 G A ADAMTS6 Silent p.H66H 0.29 TCGA-A3-A8CQ-01 5 64931850 64931850 G A TRAPPC13 Silent p.L65L 0.28 TCGA-A3-A8CQ-01 5 72384007 72384008 - TT FCHO2 3'UTR 0.21 TCGA-A3-A8CQ-01 6 154428777 154428777 T - OPRM1 Intron 0.33 TCGA-A3-A8CQ-01 6 27420750 27420750 T C ZNF184 Silent p.Q196Q 0.30 TCGA-A3-A8CQ-01 6 32146234 32146234 T C RNF5 5'UTR 0.22 TCGA-A3-A8CQ-01 6 36177583 36177583 C T BRPF3 Missense_Mutation p.A586V 0.06 tolerated(0.36) benign(0.145) TCGA-A3-A8CQ-01 6 7580989 7580989 G A DSP Silent p.T1522T 0.25 TCGA-A3-A8CQ-01 7 138281246 138281246 G T SVOPL Silent p.A461A 0.42 TCGA-A3-A8CQ-01 7 30118513 30118513 G C PLEKHA8 3'UTR 0.14 TCGA-A3-A8CQ-01 7 72984864 72984864 C T TBL2 Silent p.L439L 0.19 TCGA-A3-A8CQ-01 8 101014460 101014460 G T RGS22 Missense_Mutation p.N920K 0.23 deleterious(0.03) benign(0.056) TCGA-A3-A8CQ-01 8 123964702 123964702 G C ZHX2 Missense_Mutation p.G318R 0.27 deleterious(0) probably_damaging(1) TCGA-A3-A8CQ-01 8 12881557 12881557 T C KIAA1456 3'UTR 0.28 TCGA-A3-A8CQ-01 8 144463778 144463778 C T RHPN1 Missense_Mutation p.R509W 0.26 tolerated(0.08) probably_damaging(0.949) TCGA-A3-A8CQ-01 8 67748261 67748261 A G SGK3 Silent p.Q231Q 0.27 TCGA-A3-A8CQ-01 9 102590642 102590642 C T NR4A3 Silent p.H117H 0.13 TCGA-A3-A8CQ-01 9 131589397 131589397 G C C9orf114 Silent p.T94T 0.32 TCGA-A3-A8CQ-01 X 106396523 106396523 A G NUP62CL Silent p.L137L 0.31 TCGA-A3-A8CQ-01 X 54276040 54276040 A G WNK3 Missense_Mutation p.I914T 0.29 deleterious(0.02) benign(0.066) TCGA-A3-A8CQ-01 X 56310937 56310937 G C KLF8 3'UTR 0.22 TCGA-A3-A8OU-01 10 101802124 101802124 T C CPN1 3'UTR 0.29 TCGA-A3-A8OU-01 10 61844491 61844492 - A ANK3 Frame_Shift_Ins p.V1315Cfs*8 0.30 TCGA-A3-A8OU-01 10 75566068 75566068 G T NDST2 Silent p.G471G 0.07 TCGA-A3-A8OU-01 11 62458605 62458605 G A BSCL2 Silent p.I338I 0.26 TCGA-A3-A8OU-01 11 84996293 84996293 A T DLG2 Missense_Mutation p.C53S 0.31 tolerated_low_confidence(0.35) benign(0) TCGA-A3-A8OU-01 12 124499037 124499037 G A ZNF664 3'UTR 0.08 TCGA-A3-A8OU-01 12 69962841 69962841 G T FRS2 Missense_Mutation p.D11Y 0.08 deleterious(0) possibly_damaging(0.591) TCGA-A3-A8OU-01 13 46538042 46538042 A C ZC3H13 Missense_Mutation p.L1537W 0.23 unknown(0) TCGA-A3-A8OU-01 13 52682457 52682459 TTA - NEK5 In_Frame_Del p.N183del 0.18 TCGA-A3-A8OU-01 14 105417977 105417977 G A AHNAK2 Missense_Mutation p.P1271S 0.10 possibly_damaging(0.803) TCGA-A3-A8OU-01 14 24538721 24538721 G C LRRC16B 3'UTR 0.20 TCGA-A3-A8OU-01 14 92608577 92608577 T A CPSF2 Nonsense_Mutation p.L244* 0.21 TCGA-A3-A8OU-01 14 97342370 97342370 C T VRK1 Nonsense_Mutation p.R358* 0.21 TCGA-A3-A8OU-01 15 26793047 26793047 T C GABRB3 Missense_Mutation p.I439V 0.29 tolerated(0.15) possibly_damaging(0.507) TCGA-A3-A8OU-01 15 34520011 34520011 T C EMC4 Missense_Mutation p.W107R 0.26 tolerated(0.09) possibly_damaging(0.895) TCGA-A3-A8OU-01 15 81218045 81218045 A T KIAA1199 Missense_Mutation p.Q790L 0.33 deleterious(0.03) possibly_damaging(0.65) TCGA-A3-A8OU-01 16 11792178 11792178 A G TXNDC11 Missense_Mutation p.F304L 0.29 deleterious(0) possibly_damaging(0.869) TCGA-A3-A8OU-01 16 3065323 3065323 G - CLDN6 3'UTR 0.17 TCGA-A3-A8OU-01 16 67968510 67968510 T C PSMB10 Missense_Mutation p.T259A 0.15 tolerated(0.57) benign(0.003) TCGA-A3-A8OU-01 16 88697632 88697632 G - ZC3H18 Frame_Shift_Del p.E930Sfs*3 0.14 TCGA-A3-A8OU-01 17 41008346 41008346 A G AOC3 Missense_Mutation p.I691V 0.30 tolerated(0.48) benign(0.001) TCGA-A3-A8OU-01 17 54925319 54925319 C T DGKE Silent p.L261L 0.26 TCGA-A3-A8OU-01 17 55028140 55028140 C T COIL Missense_Mutation p.D155N 0.25 tolerated(0.15) benign(0.056) TCGA-A3-A8OU-01 17 72733198 72733198 A G RAB37 Missense_Mutation p.E17G 0.30 tolerated_low_confidence(0.09) benign(0) TCGA-A3-A8OU-01 18 48500794 48500794 T A ELAC1 Missense_Mutation p.F7Y 0.31 deleterious(0.02) probably_damaging(0.988) TCGA-A3-A8OU-01 18 59174697 59174697 A T CDH20 Silent p.A307A 0.40 TCGA-A3-A8OU-01 18 74637432 74637432 G T ZNF236 Missense_Mutation p.V1315F 0.05 deleterious(0) possibly_damaging(0.797) TCGA-A3-A8OU-01 19 10217003 10217023 GCGCCGGAAGTGAGCTGCGCA - PPAN-P2RY11 5'Flank 0.13 TCGA-A3-A8OU-01 19 31767750 31767750 G A TSHZ3 Silent p.S983S 0.23 TCGA-A3-A8OU-01 19 33130160 33130160 G A ANKRD27 Intron 0.26 TCGA-A3-A8OU-01 19 3820246 3820246 C T ZFR2 Silent p.A558A 0.11 TCGA-A3-A8OU-01 19 39334547 39334547 C T HNRNPL Missense_Mutation p.R272H 0.22 deleterious(0.02) probably_damaging(0.955) TCGA-A3-A8OU-01 19 4472290 4472290 C T HDGFRP2 5'UTR 0.23 TCGA-A3-A8OU-01 19 51506434 51506434 C T KLK9 Missense_Mutation p.R229Q 0.05 tolerated(0.15) benign(0.02) TCGA-A3-A8OU-01 19 6750043 6750043 T C TRIP10 Missense_Mutation p.I398T 0.22 deleterious(0.01) possibly_damaging(0.908) TCGA-A3-A8OU-01 19 9492433 9492433 G A ZNF177 Missense_Mutation p.G476S 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-A3-A8OU-01 1 11174459 11174459 C T MTOR Missense_Mutation p.V2406M 0.30 deleterious(0.02) possibly_damaging(0.883) TCGA-A3-A8OU-01 1 146680456 146680456 T C FMO5 Missense_Mutation p.Q263R 0.07 tolerated(0.51) benign(0.005) TCGA-A3-A8OU-01 1 152383273 152383273 T C CRNN Silent p.G95G 0.26 TCGA-A3-A8OU-01 1 152383276 152383276 C G CRNN Missense_Mutation p.E94D 0.29 tolerated(0.22) benign(0.065) TCGA-A3-A8OU-01 1 155188223 155188223 G A MTX1 3'Flank 0.17 TCGA-A3-A8OU-01 1 161559546 161559546 G T RP11-25K21.6 Intron 0.27 TCGA-A3-A8OU-01 1 16785580 16785580 T G NECAP2 3'UTR 0.14 TCGA-A3-A8OU-01 1 185069449 185069449 T G RNF2 3'UTR 0.32 TCGA-A3-A8OU-01 1 186158899 186158900 - G HMCN1 Frame_Shift_Ins p.A5600Gfs*20 0.14 TCGA-A3-A8OU-01 1 19487633 19487633 C G UBR4 Silent p.V1728V 0.25 TCGA-A3-A8OU-01 1 204590599 204590599 T G LRRN2 5'UTR 0.10 TCGA-A3-A8OU-01 1 214813306 214813306 A T CENPF Missense_Mutation p.E542V 0.29 possibly_damaging(0.836) TCGA-A3-A8OU-01 1 36641838 36641838 G C MAP7D1 Missense_Mutation p.V297L 0.29 probably_damaging(0.997) TCGA-A3-A8OU-01 1 52499454 52499454 G A TXNDC12 Intron 0.31 TCGA-A3-A8OU-01 1 57252882 57252882 C T C1orf168 Splice_Site p.X307_splice 0.07 TCGA-A3-A8OU-01 1 64100666 64100666 T A PGM1 Missense_Mutation p.F301L 0.31 tolerated(0.08) benign(0.068) TCGA-A3-A8OU-01 20 6090946 6090946 C A FERMT1 Missense_Mutation p.G249C 0.16 deleterious(0.01) probably_damaging(1) TCGA-A3-A8OU-01 20 62366744 62366744 G A ZGPAT Missense_Mutation p.A429T 0.28 tolerated(0.56) benign(0.006) TCGA-A3-A8OU-01 21 45725249 45725249 G A PFKL Intron 0.17 TCGA-A3-A8OU-01 22 18314658 18314678 TCCTCCTCCTCTTCATATTCT - MICAL3 In_Frame_Del p.Y1001_E1007del 0.23 TCGA-A3-A8OU-01 22 23252758 23252758 A G IGLJ4 Silent p.G5G 0.31 TCGA-A3-A8OU-01 22 37482452 37482452 C T TMPRSS6 Missense_Mutation p.G291S 0.29 deleterious(0) probably_damaging(0.998) TCGA-A3-A8OU-01 2 131976041 131976041 C A POTEE Missense_Mutation p.S22R 0.09 deleterious_low_confidence(0.04) benign(0.307) TCGA-A3-A8OU-01 2 149542554 149542554 A G EPC2 Missense_Mutation p.I779V 0.24 tolerated(0.97) benign(0.061) TCGA-A3-A8OU-01 2 165956874 165956874 A T SCN3A Missense_Mutation p.S1302T 0.20 deleterious(0.01) probably_damaging(0.92) TCGA-A3-A8OU-01 2 179418106 179418106 G T TTN Missense_Mutation p.L29841M 0.08 TCGA-A3-A8OU-01 2 179443826 179443826 G A TTN Missense_Mutation p.P22644L 0.31 TCGA-A3-A8OU-01 2 201437177 201437177 A G SGOL2 Missense_Mutation p.Q703R 0.25 deleterious(0.03) possibly_damaging(0.612) TCGA-A3-A8OU-01 2 220073044 220073044 C A ZFAND2B Silent p.T167T 0.30 TCGA-A3-A8OU-01 2 239181758 239181758 C T PER2 Missense_Mutation p.V175M 0.20 tolerated(0.13) benign(0.033) TCGA-A3-A8OU-01 3 113299470 113299470 T - SIDT1 Frame_Shift_Del p.D196Tfs*45 0.21 TCGA-A3-A8OU-01 3 120628534 120628534 G A STXBP5L Missense_Mutation p.V37I 0.34 tolerated(0.16) benign(0.001) TCGA-A3-A8OU-01 3 135980896 135980896 G A PCCB Missense_Mutation p.D198N 0.24 deleterious_low_confidence(0.02) benign(0.33) TCGA-A3-A8OU-01 3 33867993 33867993 T G PDCD6IP Missense_Mutation p.I213R 0.04 deleterious(0) probably_damaging(0.998) TCGA-A3-A8OU-01 3 44364694 44364694 A G TOPAZ1 Missense_Mutation p.K1528E 0.06 deleterious(0) possibly_damaging(0.742) TCGA-A3-A8OU-01 3 49212341 49212341 C G KLHDC8B Missense_Mutation p.H236Q 0.52 tolerated(0.2) probably_damaging(0.998) TCGA-A3-A8OU-01 3 49570443 49570443 C T DAG1 Silent p.N833N 0.28 TCGA-A3-A8OU-01 3 52643654 52643654 C - PBRM1 Frame_Shift_Del p.D748Mfs*27 0.24 TCGA-A3-A8OU-01 3 57582983 57582983 G - ARF4 5'UTR 0.29 TCGA-A3-A8OU-01 3 98216948 98216948 A G OR5K2 Missense_Mutation p.I142V 0.28 tolerated(0.16) benign(0.03) TCGA-A3-A8OU-01 4 121737658 121737658 C T PRDM5 Missense_Mutation p.R272K 0.26 tolerated(0.37) benign(0.032) TCGA-A3-A8OU-01 4 140811742 140811742 G T MAML3 Missense_Mutation p.T283N 0.21 benign(0.002) TCGA-A3-A8OU-01 4 2045657 2045657 C G C4orf48 3'UTR 0.37 TCGA-A3-A8OU-01 4 3208660 3208660 G A HTT Missense_Mutation p.D2009N 0.32 possibly_damaging(0.703) TCGA-A3-A8OU-01 4 39469261 39469261 A T LIAS Missense_Mutation p.L244F 0.22 deleterious(0.01) possibly_damaging(0.867) TCGA-A3-A8OU-01 4 47663752 47663752 G A CORIN Silent p.L571L 0.20 TCGA-A3-A8OU-01 4 47663754 47663754 C T CORIN Missense_Mutation p.C570Y 0.19 deleterious(0) probably_damaging(1) TCGA-A3-A8OU-01 4 75695287 75695287 G A BTC Silent p.D48D 0.11 TCGA-A3-A8OU-01 4 76878711 76878711 T G SDAD1 Missense_Mutation p.K577Q 0.20 deleterious(0.04) possibly_damaging(0.823) TCGA-A3-A8OU-01 4 90171039 90171039 G T GPRIN3 Missense_Mutation p.Q75K 0.04 tolerated(0.05) benign(0.38) TCGA-A3-A8OU-01 5 139781730 139781730 G A ANKHD1 Missense_Mutation p.G60S 0.05 unknown(0) TCGA-A3-A8OU-01 5 140023749 140023749 G A TMCO6 Silent p.L390L 0.26 TCGA-A3-A8OU-01 5 140048236 140048236 T A WDR55 Silent p.V140V 0.23 TCGA-A3-A8OU-01 5 149360268 149360268 C T SLC26A2 Missense_Mutation p.P371L 0.32 deleterious(0) probably_damaging(1) TCGA-A3-A8OU-01 5 154092627 154092627 G A LARP1 Missense_Mutation p.E48K 0.05 tolerated_low_confidence(0.67) benign(0.003) TCGA-A3-A8OU-01 5 175772458 175772458 A G SIMC1 3'UTR 0.33 TCGA-A3-A8OU-01 5 65319191 65319191 G T ERBB2IP Missense_Mutation p.G224V 0.24 deleterious(0.01) probably_damaging(1) TCGA-A3-A8OU-01 6 26465585 26465585 G T BTN2A1 Missense_Mutation p.K295N 0.32 tolerated(0.18) possibly_damaging(0.523) TCGA-A3-A8OU-01 6 33288169 33288169 C A DAXX Missense_Mutation p.L413F 0.05 deleterious(0.04) possibly_damaging(0.765) TCGA-A3-A8OU-01 7 100320654 100320654 C T EPO Silent p.I160I 0.25 TCGA-A3-A8OU-01 7 100349428 100349428 C T ZAN Missense_Mutation p.T567I 0.07 benign(0.014) TCGA-A3-A8OU-01 7 100487000 100487000 G A UFSP1 5'UTR 0.09 TCGA-A3-A8OU-01 7 122269336 122269336 T C CADPS2 Missense_Mutation p.D278G 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-A3-A8OU-01 7 135612118 135612118 A T LUZP6 Silent p.S27S 0.27 TCGA-A3-A8OU-01 7 138545968 138545968 T C KIAA1549 Missense_Mutation p.S1722G 0.16 deleterious(0.03) benign(0.036) TCGA-A3-A8OU-01 8 120759012 120759012 A G TAF2 Missense_Mutation p.V1014A 0.25 tolerated(0.77) benign(0.001) TCGA-A3-A8OU-01 8 642517 642517 C T ERICH1 Missense_Mutation p.G89R 0.29 tolerated(0.41) benign(0.003) TCGA-A3-A8OU-01 8 94746261 94746261 T C RBM12B Missense_Mutation p.E793G 0.37 tolerated_low_confidence(0.07) probably_damaging(0.932) TCGA-A3-A8OU-01 9 124855002 124855002 G C TTLL11 Silent p.A232A 0.14 TCGA-A3-A8OU-01 9 33113540 33113540 C T B4GALT1 Missense_Mutation p.G370D 0.19 deleterious(0) probably_damaging(1) TCGA-A3-A8OU-01 9 35682203 35682203 G C TPM2 Intron 0.40 TCGA-A3-A8OU-01 9 90296353 90296353 G A DAPK1 Missense_Mutation p.R679Q 0.11 tolerated(0.3) possibly_damaging(0.791) TCGA-A3-A8OU-01 X 153944561 153944561 C A GAB3 Missense_Mutation p.S39I 0.29 deleterious(0) benign(0.194) TCGA-A3-A8OU-01 X 36322019 36322019 C G CXorf30 Missense_Mutation p.Q122E 0.22 tolerated(0.95) benign(0.011) TCGA-A3-A8OU-01 X 54955192 54955192 A G TRO Missense_Mutation p.N679D 0.08 deleterious(0) unknown(0) TCGA-A3-A8OV-01 10 100016621 100016621 G A LOXL4 Silent p.S448S 0.23 TCGA-A3-A8OV-01 10 100016622 100016622 C T LOXL4 Missense_Mutation p.S448N 0.23 deleterious(0.05) benign(0.022) TCGA-A3-A8OV-01 10 102748172 102748172 A C C10orf2 Missense_Mutation p.I69L 0.36 tolerated(0.1) benign(0.088) TCGA-A3-A8OV-01 10 103339441 103339449 AAACTCGCT - POLL In_Frame_Del p.S497_F499del 0.25 TCGA-A3-A8OV-01 10 103825947 103825947 A C HPS6 Missense_Mutation p.K239T 0.29 tolerated(0.05) possibly_damaging(0.607) TCGA-A3-A8OV-01 10 103899375 103899375 T A PPRC1 Silent p.P370P 0.38 TCGA-A3-A8OV-01 10 124895732 124895732 T C HMX3 Missense_Mutation p.F56L 0.35 tolerated_low_confidence(0.6) benign(0.023) TCGA-A3-A8OV-01 10 13206139 13206140 - AT MCM10 5'UTR 0.29 TCGA-A3-A8OV-01 10 23607828 23607829 AA - C10orf67 3'UTR 0.27 TCGA-A3-A8OV-01 10 24498178 24498178 G T KIAA1217 Missense_Mutation p.R19I 0.46 deleterious_low_confidence(0.01) benign(0) TCGA-A3-A8OV-01 10 50530771 50530771 C T C10orf71 Nonsense_Mutation p.R61* 0.33 TCGA-A3-A8OV-01 10 60027441 60027441 G A IPMK 5'UTR 0.25 TCGA-A3-A8OV-01 11 2186917 2186917 G C TH Missense_Mutation p.S425C 0.29 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OV-01 11 26743154 26743154 T C SLC5A12 Silent p.A36A 0.38 TCGA-A3-A8OV-01 11 43428920 43428920 G C TTC17 Missense_Mutation p.W619C 0.34 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OV-01 11 46785141 46785141 T C CKAP5 Missense_Mutation p.I1193V 0.37 tolerated(1) benign(0.001) TCGA-A3-A8OV-01 11 55735270 55735270 C G OR10AG1 Missense_Mutation p.G224R 0.43 deleterious(0.02) possibly_damaging(0.767) TCGA-A3-A8OV-01 11 58979639 58979639 T C MPEG1 Missense_Mutation p.S234G 0.39 deleterious(0.03) benign(0.186) TCGA-A3-A8OV-01 11 61135188 61135188 T C TMEM138 Intron 0.45 TCGA-A3-A8OV-01 11 64812728 64812728 G T NAALADL1 3'UTR 0.08 TCGA-A3-A8OV-01 11 72527869 72527869 C A ATG16L2 Missense_Mutation p.P72H 0.27 tolerated(0.07) possibly_damaging(0.8) TCGA-A3-A8OV-01 11 73584163 73584163 G A COA4 Silent p.H87H 0.44 TCGA-A3-A8OV-01 11 73712305 73712305 C A UCP3 3'UTR 0.22 TCGA-A3-A8OV-01 11 7649566 7649569 AATG - PPFIBP2 Frame_Shift_Del p.N293Kfs*7 0.33 TCGA-A3-A8OV-01 12 103984758 103984758 G A STAB2 Silent p.P55P 0.08 TCGA-A3-A8OV-01 12 120984320 120984320 G C RNF10 Missense_Mutation p.K90N 0.37 deleterious(0) probably_damaging(0.996) TCGA-A3-A8OV-01 12 123060369 123060369 T A KNTC1 Missense_Mutation p.Y837N 0.32 deleterious(0.01) benign(0.188) TCGA-A3-A8OV-01 12 133196134 133196134 G C P2RX2 Missense_Mutation p.V95L 0.31 deleterious(0.01) possibly_damaging(0.515) TCGA-A3-A8OV-01 12 49725485 49725485 A T TROAP 3'UTR 0.33 TCGA-A3-A8OV-01 12 57597212 57597212 G A LRP1 Missense_Mutation p.C3620Y 0.41 probably_damaging(1) TCGA-A3-A8OV-01 12 68708907 68708907 C T MDM1 Silent p.R440R 0.03 TCGA-A3-A8OV-01 13 21714807 21714807 T G SAP18 Missense_Mutation p.I39S 0.32 deleterious(0) benign(0.329) TCGA-A3-A8OV-01 13 41523942 41523943 - T ELF1 Frame_Shift_Ins p.G177Rfs*5 0.26 TCGA-A3-A8OV-01 14 106092267 106092267 A G IGHG4 Missense_Mutation p.L46P 0.25 deleterious(0) possibly_damaging(0.608) TCGA-A3-A8OV-01 14 106092268 106092268 G T IGHG4 Missense_Mutation p.L46M 0.25 deleterious(0.02) possibly_damaging(0.689) TCGA-A3-A8OV-01 14 19378113 19378113 C A OR11H12 Missense_Mutation p.P174T 0.10 deleterious(0.02) probably_damaging(1) TCGA-A3-A8OV-01 14 21833276 21833276 T A SUPT16H Missense_Mutation p.E358V 0.34 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OV-01 14 24029559 24029559 G T AP1G2 Missense_Mutation p.P688T 0.33 tolerated(0.39) benign(0.262) TCGA-A3-A8OV-01 14 45431921 45431921 C T FAM179B Silent p.L99L 0.41 TCGA-A3-A8OV-01 14 60631938 60631938 G T DHRS7 Silent p.G30G 0.33 TCGA-A3-A8OV-01 14 64519144 64519144 A G SYNE2 Missense_Mutation p.N2838S 0.39 benign(0.02) TCGA-A3-A8OV-01 14 77493785 77493785 C T IRF2BPL Silent p.Q117Q 0.08 TCGA-A3-A8OV-01 14 86089166 86089166 C T FLRT2 Silent p.S436S 0.34 TCGA-A3-A8OV-01 15 20740149 20740149 C A GOLGA6L6 Missense_Mutation p.W534L 0.22 unknown(0) TCGA-A3-A8OV-01 15 24924925 24924925 C T NPAP1 3'UTR 0.41 TCGA-A3-A8OV-01 15 55612582 55612582 T A PIGB Silent p.L91L 0.34 TCGA-A3-A8OV-01 15 57925882 57925882 A G GCOM1 Silent p.L292L 0.33 TCGA-A3-A8OV-01 15 63987040 63987040 C A HERC1 Silent p.V1725V 0.35 TCGA-A3-A8OV-01 15 64422165 64422165 G T SNX1 Missense_Mutation p.K286N 0.38 deleterious(0) probably_damaging(0.996) TCGA-A3-A8OV-01 15 75142933 75142933 C T SCAMP2 Missense_Mutation p.G185D 0.42 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OV-01 15 78453935 78453935 C A IDH3A Missense_Mutation p.T101N 0.37 deleterious(0) probably_damaging(0.98) TCGA-A3-A8OV-01 15 89820014 89820014 A G FANCI Silent p.P395P 0.35 TCGA-A3-A8OV-01 16 31724639 31724639 T C ZNF720 5'UTR 0.24 TCGA-A3-A8OV-01 16 68349948 68349948 A G PRMT7 Silent p.E22E 0.31 TCGA-A3-A8OV-01 16 71884473 71884473 G A ATXN1L Missense_Mutation p.R277Q 0.39 tolerated(0.47) benign(0) TCGA-A3-A8OV-01 16 72828229 72828233 GGGGA - ZFHX3 Frame_Shift_Del p.V2783Afs*6 0.34 TCGA-A3-A8OV-01 16 79634587 79634587 C A MAF 5'UTR 0.38 TCGA-A3-A8OV-01 16 81009897 81009897 G T CMC2 3'UTR 0.37 TCGA-A3-A8OV-01 17 18144880 18144880 A T LLGL1 Missense_Mutation p.Y873F 0.41 deleterious(0.03) possibly_damaging(0.791) TCGA-A3-A8OV-01 17 18144881 18144881 T G LLGL1 Nonsense_Mutation p.Y873* 0.40 TCGA-A3-A8OV-01 17 2367604 2367604 G A METTL16 Missense_Mutation p.S209F 0.04 deleterious(0) possibly_damaging(0.883) TCGA-A3-A8OV-01 17 37842195 37842195 C G PGAP3 Missense_Mutation p.V87L 0.38 deleterious(0.01) benign(0.284) TCGA-A3-A8OV-01 17 41905128 41905128 C T MPP3 Missense_Mutation p.D172N 0.41 deleterious(0) probably_damaging(0.989) TCGA-A3-A8OV-01 17 4837666 4837666 A T GP1BA Silent p.T589T 0.39 TCGA-A3-A8OV-01 17 4884519 4884519 C A CAMTA2 Splice_Site p.X257_splice 0.41 TCGA-A3-A8OV-01 17 56344792 56344792 G A LPO Missense_Mutation p.M592I 0.37 tolerated(0.14) benign(0.004) TCGA-A3-A8OV-01 17 57288982 57288982 C T SMG8 Missense_Mutation p.H524Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OV-01 17 76168067 76168067 T A SYNGR2 3'UTR 0.43 TCGA-A3-A8OV-01 17 7707612 7707612 C G DNAH2 Missense_Mutation p.A3004G 0.42 benign(0.06) TCGA-A3-A8OV-01 17 77924357 77924357 T C TBC1D16 Silent p.T370T 0.30 TCGA-A3-A8OV-01 17 79618132 79618132 T C PDE6G Missense_Mutation p.H79R 0.29 deleterious_low_confidence(0.02) benign(0.042) TCGA-A3-A8OV-01 17 8048102 8048102 A T PER1 Missense_Mutation p.S810T 0.31 tolerated(0.57) benign(0.093) TCGA-A3-A8OV-01 18 12836817 12836817 C G PTPN2 Missense_Mutation p.E78D 0.41 deleterious(0.04) possibly_damaging(0.861) TCGA-A3-A8OV-01 18 18608861 18608861 T C ROCK1 Missense_Mutation p.I363V 0.36 tolerated(1) benign(0.01) TCGA-A3-A8OV-01 18 19116135 19116135 A G ESCO1 Silent p.I685I 0.36 TCGA-A3-A8OV-01 18 22020544 22020544 T G IMPACT Missense_Mutation p.L151R 0.35 tolerated(0.16) benign(0.017) TCGA-A3-A8OV-01 18 60227869 60227869 C T ZCCHC2 Silent p.P514P 0.36 TCGA-A3-A8OV-01 18 77895306 77895306 G T ADNP2 Missense_Mutation p.Q670H 0.30 tolerated(0.07) probably_damaging(0.922) TCGA-A3-A8OV-01 19 10434175 10434175 G A RAVER1 Missense_Mutation p.A292V 0.37 deleterious(0) probably_damaging(0.93) TCGA-A3-A8OV-01 19 13264305 13264305 C T IER2 Missense_Mutation p.P102L 0.40 tolerated(0.32) benign(0.012) TCGA-A3-A8OV-01 19 16976349 16976349 G A SIN3B Silent p.S536S 0.23 TCGA-A3-A8OV-01 19 21133259 21133259 A C ZNF85 3'UTR 0.44 TCGA-A3-A8OV-01 19 35622167 35622167 G A LGI4 Intron 0.39 TCGA-A3-A8OV-01 19 36017646 36017646 C A SBSN Missense_Mutation p.G513V 0.45 deleterious(0.02) probably_damaging(0.988) TCGA-A3-A8OV-01 19 36727479 36727479 G A ZNF146 Missense_Mutation p.C46Y 0.37 deleterious(0) probably_damaging(0.965) TCGA-A3-A8OV-01 19 45150618 45150618 G A PVR Missense_Mutation p.R68Q 0.36 tolerated(0.06) possibly_damaging(0.733) TCGA-A3-A8OV-01 19 47933390 47933390 G T SLC8A2 Missense_Mutation p.L908I 0.05 tolerated(0.23) possibly_damaging(0.746) TCGA-A3-A8OV-01 19 48894601 48894601 T G KDELR1 Silent p.R5R 0.24 TCGA-A3-A8OV-01 19 54756792 54756792 C A LILRB5 Silent p.L472L 0.13 TCGA-A3-A8OV-01 19 58453393 58453393 G T ZNF256 Missense_Mutation p.H261Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-A3-A8OV-01 19 5915049 5915049 G A CAPS Silent p.G120G 0.34 TCGA-A3-A8OV-01 19 7692145 7692145 T C XAB2 Missense_Mutation p.Y169C 0.31 deleterious(0) probably_damaging(0.982) TCGA-A3-A8OV-01 19 8576405 8576405 G A ZNF414 Missense_Mutation p.P297L 0.36 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OV-01 19 8576633 8576633 C T ZNF414 Missense_Mutation p.A248T 0.48 tolerated(0.53) benign(0.006) TCGA-A3-A8OV-01 1 115258774 115258774 T G NRAS Missense_Mutation p.E3A 0.40 deleterious(0.01) benign(0.013) TCGA-A3-A8OV-01 1 12907956 12907956 C T HNRNPCL1 Missense_Mutation p.A63T 0.08 deleterious(0) possibly_damaging(0.893) TCGA-A3-A8OV-01 1 143912247 143912247 A C FAM72D Missense_Mutation p.C17G 0.13 tolerated(0.36) benign(0.047) TCGA-A3-A8OV-01 1 145533822 145533822 C G ITGA10 Missense_Mutation p.L490V 0.32 tolerated(0.56) benign(0.04) TCGA-A3-A8OV-01 1 155001723 155001723 T C DCST2 Missense_Mutation p.E443G 0.06 deleterious(0) probably_damaging(0.942) TCGA-A3-A8OV-01 1 155939013 155939013 A T ARHGEF2 Missense_Mutation p.S48T 0.43 tolerated(0.5) probably_damaging(0.937) TCGA-A3-A8OV-01 1 158325757 158325757 C T CD1E Nonsense_Mutation p.R256* 0.04 TCGA-A3-A8OV-01 1 160328116 160328116 C T NCSTN 3'UTR 0.33 TCGA-A3-A8OV-01 1 175046812 175046812 C G TNN Missense_Mutation p.F86L 0.34 deleterious(0) probably_damaging(0.998) TCGA-A3-A8OV-01 1 17752142 17752142 G T RCC2 Missense_Mutation p.H140N 0.37 tolerated(0.05) possibly_damaging(0.902) TCGA-A3-A8OV-01 1 179347801 179347801 A G AXDND1 Missense_Mutation p.Y135C 0.41 tolerated(0.13) probably_damaging(0.926) TCGA-A3-A8OV-01 1 179989487 179989487 G C CEP350 Missense_Mutation p.E860Q 0.10 possibly_damaging(0.653) TCGA-A3-A8OV-01 1 201354899 201354900 - T LAD1 Frame_Shift_Ins p.M354Nfs*77 0.23 TCGA-A3-A8OV-01 1 203317294 203317294 C G FMOD Missense_Mutation p.Q35H 0.34 tolerated(0.18) benign(0.241) TCGA-A3-A8OV-01 1 236969470 236969470 C T MTR Silent p.I92I 0.57 TCGA-A3-A8OV-01 1 24122263 24122263 G T GALE 3'UTR 0.37 TCGA-A3-A8OV-01 1 52344138 52344138 C A NRD1 Missense_Mutation p.M50I 0.50 deleterious_low_confidence(0.01) benign(0) TCGA-A3-A8OV-01 1 6527497 6527503 GGGATCC - PLEKHG5 3'Flank 0.39 TCGA-A3-A8OV-01 1 90487886 90487886 A C ZNF326 Silent p.R461R 0.36 TCGA-A3-A8OV-01 20 17462724 17462724 A G PCSK2 3'UTR 0.43 TCGA-A3-A8OV-01 20 17594701 17594701 G A RRBP1 3'UTR 0.38 TCGA-A3-A8OV-01 20 23335170 23335170 C A NXT1 3'UTR 0.35 TCGA-A3-A8OV-01 20 34242560 34242560 C G RBM12 Missense_Mutation p.V229L 0.34 tolerated_low_confidence(0.07) unknown(0) TCGA-A3-A8OV-01 20 62200968 62200968 G T HELZ2 Missense_Mutation p.F207L 0.42 deleterious(0) probably_damaging(0.993) TCGA-A3-A8OV-01 22 20079487 20079487 G T DGCR8 Nonsense_Mutation p.E534* 0.32 TCGA-A3-A8OV-01 22 31521870 31521870 G A INPP5J Intron 0.38 TCGA-A3-A8OV-01 22 43715933 43715951 TATCACTCACCCAGGCAGT - SCUBE1 Splice_Site p.X114_splice 0.26 TCGA-A3-A8OV-01 2 152541456 152541456 T - NEB Frame_Shift_Del p.T891Lfs*66 0.27 TCGA-A3-A8OV-01 2 163167176 163167176 C T IFIH1 Intron 0.34 TCGA-A3-A8OV-01 2 167094680 167094680 A G SCN9A Missense_Mutation p.L1231P 0.31 deleterious(0) probably_damaging(0.962) TCGA-A3-A8OV-01 2 179398458 179398458 C - TTN Frame_Shift_Del p.G34295Vfs*24 0.26 TCGA-A3-A8OV-01 2 20206016 20206016 G T MATN3 Missense_Mutation p.S93R 0.38 deleterious(0) probably_damaging(1) TCGA-A3-A8OV-01 2 202263024 202263024 G A TRAK2 Silent p.V178V 0.38 TCGA-A3-A8OV-01 2 24021084 24021084 A G ATAD2B Missense_Mutation p.L855P 0.37 deleterious(0) probably_damaging(0.929) TCGA-A3-A8OV-01 2 27247146 27247147 GA T MAPRE3 Frame_Shift_Del p.K150Nfs*26 0.29 TCGA-A3-A8OV-01 2 37483886 37483886 C A PRKD3 Nonsense_Mutation p.E778* 0.36 TCGA-A3-A8OV-01 2 63822565 63822565 T G MDH1 Missense_Mutation p.I55M 0.35 deleterious(0.01) possibly_damaging(0.655) TCGA-A3-A8OV-01 2 74760216 74760216 C T HTRA2 3'UTR 0.07 TCGA-A3-A8OV-01 2 85768213 85768213 T A MAT2A Silent p.I33I 0.31 TCGA-A3-A8OV-01 2 9484898 9484898 A C ASAP2 Missense_Mutation p.K331T 0.37 deleterious(0) possibly_damaging(0.774) TCGA-A3-A8OV-01 3 10188287 10188287 G T VHL Nonsense_Mutation p.G144* 0.66 TCGA-A3-A8OV-01 3 138374303 138374303 C A PIK3CB Missense_Mutation p.E1047D 0.36 deleterious(0.01) possibly_damaging(0.692) TCGA-A3-A8OV-01 3 138664334 138664334 T G FOXL2 3'UTR 0.69 TCGA-A3-A8OV-01 3 152884760 152884761 TG - RAP2B 3'UTR 0.22 TCGA-A3-A8OV-01 3 39108317 39108317 G C WDR48 Missense_Mutation p.W144C 0.73 deleterious(0) probably_damaging(1) TCGA-A3-A8OV-01 3 52651336 52651336 A G PBRM1 Missense_Mutation p.I587T 0.52 deleterious(0.01) possibly_damaging(0.561) TCGA-A3-A8OV-01 4 10084655 10084655 C A WDR1 Missense_Mutation p.R396L 0.40 tolerated(0.24) benign(0.177) TCGA-A3-A8OV-01 4 10084696 10084696 G A WDR1 Silent p.C382C 0.33 TCGA-A3-A8OV-01 4 129003396 129003396 C A LARP1B Missense_Mutation p.N98K 0.36 tolerated(0.09) benign(0.071) TCGA-A3-A8OV-01 4 141847215 141847215 G T RNF150 Missense_Mutation p.H301Q 0.37 deleterious(0) probably_damaging(0.941) TCGA-A3-A8OV-01 4 158256905 158256905 C A GRIA2 Missense_Mutation p.A450D 0.05 deleterious(0) probably_damaging(0.978) TCGA-A3-A8OV-01 5 102895148 102895148 A T NUDT12 Missense_Mutation p.N76K 0.35 deleterious(0) probably_damaging(0.975) TCGA-A3-A8OV-01 5 149011625 149011625 G A ARHGEF37 Silent p.E633E 0.43 TCGA-A3-A8OV-01 5 167689646 167689646 G T TENM2 Missense_Mutation p.R2719I 0.38 tolerated(0.09) benign(0.088) TCGA-A3-A8OV-01 5 179739482 179739482 A T GFPT2 Silent p.I498I 0.50 TCGA-A3-A8OV-01 5 180630570 180630570 T G TRIM7 Missense_Mutation p.E198A 0.04 tolerated(0.25) possibly_damaging(0.872) TCGA-A3-A8OV-01 5 31464354 31464354 C A DROSHA Missense_Mutation p.D855Y 0.04 deleterious(0) probably_damaging(1) TCGA-A3-A8OV-01 5 39394417 39394417 A G DAB2 Silent p.S2S 0.38 TCGA-A3-A8OV-01 5 60455647 60455647 A T SMIM15 3'UTR 0.12 TCGA-A3-A8OV-01 5 72302307 72302307 T G FCHO2 Nonsense_Mutation p.Y177* 0.36 TCGA-A3-A8OV-01 5 75621297 75621297 G C SV2C Silent p.L703L 0.34 TCGA-A3-A8OV-01 6 146125761 146125761 G C FBXO30 Missense_Mutation p.S594C 0.34 deleterious(0.04) possibly_damaging(0.894) TCGA-A3-A8OV-01 6 151687882 151687882 G A ZBTB2 Missense_Mutation p.L107F 0.30 deleterious(0) probably_damaging(0.998) TCGA-A3-A8OV-01 6 28219611 28219611 C T ZKSCAN4 Missense_Mutation p.E50K 0.41 deleterious(0) probably_damaging(0.913) TCGA-A3-A8OV-01 6 32805539 32805539 A G TAP2 Missense_Mutation p.F158L 0.40 tolerated(0.15) probably_damaging(0.999) TCGA-A3-A8OV-01 6 36027120 36027120 G T MAPK14 Missense_Mutation p.D101Y 0.29 deleterious(0) probably_damaging(0.962) TCGA-A3-A8OV-01 6 42930079 42930079 T C GNMT Splice_Site p.X112_splice 0.45 TCGA-A3-A8OV-01 6 83847434 83847434 C T DOPEY1 Missense_Mutation p.H1225Y 0.30 tolerated_low_confidence(0.95) benign(0.004) TCGA-A3-A8OV-01 6 99936616 99936616 A T USP45 Missense_Mutation p.L187I 0.33 tolerated(0.41) benign(0.003) TCGA-A3-A8OV-01 7 103244887 103244887 C T RELN Missense_Mutation p.A1018T 0.50 tolerated(0.37) benign(0.001) TCGA-A3-A8OV-01 7 107353008 107353008 G T SLC26A4 Missense_Mutation p.D754Y 0.28 deleterious(0.02) possibly_damaging(0.526) TCGA-A3-A8OV-01 7 116544330 116544330 G T CAPZA2 Missense_Mutation p.D107Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-A3-A8OV-01 7 127017338 127017338 A C ZNF800 Missense_Mutation p.I68S 0.59 deleterious(0) probably_damaging(0.995) TCGA-A3-A8OV-01 7 134143844 134143844 G C AKR1B1 5'UTR 0.26 TCGA-A3-A8OV-01 7 140534669 140534669 A T BRAF Missense_Mutation p.Y82N 0.28 deleterious(0) probably_damaging(0.981) TCGA-A3-A8OV-01 7 20824653 20824653 C T SP8 Silent p.S261S 0.47 TCGA-A3-A8OV-01 7 30961293 30961293 T G AQP1 Intron 0.54 TCGA-A3-A8OV-01 7 36193946 36193946 C G EEPD1 Missense_Mutation p.L5V 0.35 deleterious(0.01) possibly_damaging(0.494) TCGA-A3-A8OV-01 7 37907437 37907437 C T NME8 Missense_Mutation p.S252F 0.27 tolerated(0.71) benign(0.008) TCGA-A3-A8OV-01 7 42949050 42949050 T A C7orf25 3'Flank 0.23 TCGA-A3-A8OV-01 7 73256423 73256423 G A WBSCR27 Silent p.V16V 0.27 TCGA-A3-A8OV-01 7 87148687 87148687 G A ABCB1 Missense_Mutation p.A961V 0.50 deleterious(0.02) possibly_damaging(0.903) TCGA-A3-A8OV-01 7 87148688 87148688 C T ABCB1 Missense_Mutation p.A961T 0.50 deleterious(0.04) benign(0.285) TCGA-A3-A8OV-01 8 11637454 11637454 C A NEIL2 Silent p.S162S 0.45 TCGA-A3-A8OV-01 8 135614127 135614127 G A ZFAT Missense_Mutation p.P612L 0.32 tolerated(0.11) benign(0.323) TCGA-A3-A8OV-01 8 144671483 144671483 C T EEF1D Missense_Mutation p.G257R 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-A3-A8OV-01 8 23118203 23118203 T A CHMP7 3'UTR 0.32 TCGA-A3-A8OV-01 8 94747068 94747078 AAAGCACCAAC - RBM12B Frame_Shift_Del p.V521* 0.29 TCGA-A3-A8OV-01 9 140110391 140110391 C A NDOR1 Missense_Mutation p.D492E 0.38 deleterious(0) probably_damaging(1) TCGA-A3-A8OV-01 9 33798613 33798613 C T PRSS3 Missense_Mutation p.S252F 0.26 deleterious(0) probably_damaging(1) TCGA-A3-A8OV-01 9 34635738 34635738 T A SIGMAR1 Missense_Mutation p.D188V 0.44 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OV-01 9 34635739 34635739 C G SIGMAR1 Missense_Mutation p.D188H 0.43 deleterious(0) probably_damaging(1) TCGA-A3-A8OV-01 9 34725627 34725627 C G FAM205A Missense_Mutation p.W537S 0.50 deleterious(0.01) benign(0.146) TCGA-A3-A8OV-01 9 72365755 72365755 T C PTAR1 Silent p.P66P 0.05 TCGA-A3-A8OV-01 9 77417006 77417006 T A TRPM6 Missense_Mutation p.Y606F 0.33 tolerated(0.17) possibly_damaging(0.878) TCGA-A3-A8OV-01 9 88842805 88842805 G C C9orf153 Silent p.G69G 0.41 TCGA-A3-A8OV-01 9 91609147 91609148 - C C9orf47 3'UTR 0.27 TCGA-A3-A8OV-01 X 128886241 128886241 C G XPNPEP2 Missense_Mutation p.Q313E 0.72 tolerated(0.24) benign(0.004) TCGA-A3-A8OV-01 X 75396731 75396731 T A PBDC1 Missense_Mutation p.C105S 0.72 deleterious(0.01) probably_damaging(0.934) TCGA-A3-A8OW-01 10 115411620 115411620 G A NRAP Missense_Mutation p.T206M 0.22 deleterious(0.02) possibly_damaging(0.762) TCGA-A3-A8OW-01 10 3191828 3191828 C T PITRM1 Missense_Mutation p.C619Y 0.07 deleterious(0) probably_damaging(0.995) TCGA-A3-A8OW-01 11 105924438 105924438 T C KBTBD3 Silent p.Q326Q 0.32 TCGA-A3-A8OW-01 11 64901080 64901080 G T SYVN1 5'UTR 0.22 TCGA-A3-A8OW-01 11 74109215 74109215 G C PGM2L1 5'UTR 0.11 TCGA-A3-A8OW-01 12 46765120 46765120 T C SLC38A2 5'UTR 0.23 TCGA-A3-A8OW-01 14 102551058 102551059 TT - HSP90AA1 Frame_Shift_Del p.K436Efs*5 0.18 TCGA-A3-A8OW-01 14 96707272 96707272 G A BDKRB2 Missense_Mutation p.D203N 0.12 tolerated(0.16) benign(0.027) TCGA-A3-A8OW-01 15 67073571 67073571 C T SMAD6 Missense_Mutation p.P397S 0.08 deleterious(0.01) possibly_damaging(0.771) TCGA-A3-A8OW-01 16 31510714 31510714 A G C16orf58 Missense_Mutation p.I170T 0.25 deleterious(0) possibly_damaging(0.616) TCGA-A3-A8OW-01 17 29315049 29315049 C T RNF135 Missense_Mutation p.H202Y 0.32 tolerated(0.06) benign(0.304) TCGA-A3-A8OW-01 18 13737129 13737129 G A RNMT Missense_Mutation p.C225Y 0.37 deleterious(0) probably_damaging(0.989) TCGA-A3-A8OW-01 19 2877409 2877409 G C ZNF556 Missense_Mutation p.Q151H 0.07 deleterious(0.02) benign(0.15) TCGA-A3-A8OW-01 19 38876073 38876073 T G GGN Missense_Mutation p.N610T 0.06 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-A3-A8OW-01 19 41928156 41928156 A G BCKDHA Missense_Mutation p.D245G 0.05 deleterious(0) probably_damaging(1) TCGA-A3-A8OW-01 19 48201902 48201903 - T GLTSCR1 Frame_Shift_Ins p.L1088Ffs*21 0.16 TCGA-A3-A8OW-01 1 200824001 200824001 G A CAMSAP2 Missense_Mutation p.G1294S 0.07 tolerated(0.16) benign(0.138) TCGA-A3-A8OW-01 1 20680309 20680309 G A VWA5B1 Silent p.T1072T 0.06 TCGA-A3-A8OW-01 1 214816356 214816356 T C CENPF Missense_Mutation p.Y1559H 0.08 benign(0.097) TCGA-A3-A8OW-01 1 228471237 228471237 A G OBSCN Missense_Mutation p.N3353S 0.32 benign(0.366) TCGA-A3-A8OW-01 20 30385294 30385294 A C TPX2 Missense_Mutation p.K641Q 0.09 deleterious(0.05) benign(0.232) TCGA-A3-A8OW-01 20 49577311 49577311 C G MOCS3 3'UTR 0.07 TCGA-A3-A8OW-01 21 36081069 36081069 C T CLIC6 Missense_Mutation p.A561V 0.11 deleterious(0) probably_damaging(0.998) TCGA-A3-A8OW-01 2 153192164 153192164 C T FMNL2 Missense_Mutation p.A16V 0.07 benign(0.357) TCGA-A3-A8OW-01 2 190541737 190541737 T A ANKAR Nonsense_Mutation p.L174* 0.39 TCGA-A3-A8OW-01 2 202900349 202900349 G A FZD7 Missense_Mutation p.V327M 0.08 deleterious(0.01) probably_damaging(0.935) TCGA-A3-A8OW-01 2 25972703 25972703 T A ASXL2 Missense_Mutation p.Q574H 0.22 tolerated(0.21) benign(0.019) TCGA-A3-A8OW-01 2 61454254 61454254 C G USP34 Missense_Mutation p.E2515Q 0.04 deleterious(0.01) probably_damaging(0.925) TCGA-A3-A8OW-01 2 9614669 9614670 - GCCCC IAH1 5'UTR 0.09 TCGA-A3-A8OW-01 3 170078929 170078930 - A SKIL Frame_Shift_Ins p.C272Mfs*14 0.19 TCGA-A3-A8OW-01 3 45988627 45988627 G T CXCR6 Silent p.L218L 0.40 TCGA-A3-A8OW-01 3 63264395 63264395 G A SYNPR Missense_Mutation p.A21T 0.09 deleterious(0.02) benign(0.347) TCGA-A3-A8OW-01 5 17276072 17276072 C A BASP1 3'UTR 0.06 TCGA-A3-A8OW-01 6 26124456 26124456 T C HIST1H2AC 5'UTR 0.31 TCGA-A3-A8OW-01 6 30691213 30691213 A G TUBB Missense_Mutation p.E125G 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-A3-A8OW-01 6 3140631 3140631 C T BPHL Missense_Mutation p.R226W 0.08 deleterious(0) probably_damaging(0.923) TCGA-A3-A8OW-01 6 75866112 75866112 C T COL12A1 Silent p.K1037K 0.04 TCGA-A3-A8OW-01 7 100683338 100683338 G A MUC17 Missense_Mutation p.V2881M 0.30 probably_damaging(0.983) TCGA-A3-A8OW-01 7 150269972 150269972 C A GIMAP4 Missense_Mutation p.Q272K 0.22 tolerated(0.15) benign(0.059) TCGA-A3-A8OW-01 9 75783994 75783994 G A ANXA1 Missense_Mutation p.R303H 0.26 deleterious(0.04) possibly_damaging(0.819) TCGA-A3-A8OW-01 X 154344446 154344446 G A BRCC3 Silent p.A246A 0.04 TCGA-A3-A8OW-01 X 24766551 24766551 G C POLA1 Missense_Mutation p.D933H 0.51 deleterious(0.02) benign(0.152) TCGA-A3-A8OW-01 X 34150044 34150044 C T FAM47A Missense_Mutation p.V118I 0.04 deleterious(0.04) possibly_damaging(0.522) TCGA-A3-A8OX-01 10 14862003 14862003 C T CDNF Silent p.A180A 0.09 TCGA-A3-A8OX-01 11 100141959 100141959 G A CNTN5 Missense_Mutation p.R767H 0.07 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OX-01 11 4674621 4674622 CT - OR51E1 Frame_Shift_Del p.L289Qfs*44 0.11 TCGA-A3-A8OX-01 11 7846794 7846794 G A OR5P3 Silent p.T242T 0.09 TCGA-A3-A8OX-01 12 10168324 10168324 C T CLEC12B Silent p.S226S 0.05 TCGA-A3-A8OX-01 12 133240651 133240651 T C POLE Missense_Mutation p.N882S 0.11 tolerated(0.26) benign(0.007) TCGA-A3-A8OX-01 12 53804857 53804857 G A SP1 Missense_Mutation p.G731S 0.04 tolerated(0.75) probably_damaging(0.934) TCGA-A3-A8OX-01 12 56154343 56154343 C G SARNP Missense_Mutation p.D195H 0.05 deleterious(0) probably_damaging(0.996) TCGA-A3-A8OX-01 12 58128385 58128385 C T AGAP2 Silent p.E435E 0.10 TCGA-A3-A8OX-01 12 70960471 70960471 G C PTPRB Silent p.V1216V 0.09 TCGA-A3-A8OX-01 12 97045486 97045486 C T C12orf55 Missense_Mutation p.P1665S 0.10 deleterious(0.03) possibly_damaging(0.794) TCGA-A3-A8OX-01 13 32753828 32753828 C A FRY Nonsense_Mutation p.S963* 0.13 TCGA-A3-A8OX-01 13 52951939 52951939 T C THSD1 Silent p.L722L 0.09 TCGA-A3-A8OX-01 13 95279561 95279561 C A GPR180 3'UTR 0.21 TCGA-A3-A8OX-01 13 99483772 99483772 A C DOCK9 Missense_Mutation p.F1466V 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-A3-A8OX-01 15 85186572 85186572 G T WDR73 3'UTR 0.22 TCGA-A3-A8OX-01 15 85399713 85399713 C T ALPK3 Nonsense_Mutation p.Q784* 0.07 TCGA-A3-A8OX-01 17 43229363 43229363 G C HEXIM1 3'UTR 0.10 TCGA-A3-A8OX-01 17 7674177 7674177 G A DNAH2 Missense_Mutation p.E1430K 0.10 probably_damaging(1) TCGA-A3-A8OX-01 19 2220184 2220184 C T DOT1L Silent p.H923H 0.14 TCGA-A3-A8OX-01 19 35175878 35175878 C A ZNF302 Silent p.R312R 0.08 TCGA-A3-A8OX-01 19 35773502 35773502 T G HAMP Missense_Mutation p.W8G 0.08 deleterious(0.04) benign(0.036) TCGA-A3-A8OX-01 19 43865691 43865691 C T CD177 3'UTR 0.05 TCGA-A3-A8OX-01 19 54561683 54561683 C T VSTM1 Missense_Mutation p.E78K 0.05 tolerated(0.3) benign(0.301) TCGA-A3-A8OX-01 19 57175895 57175895 G A ZNF835 Silent p.C224C 0.06 TCGA-A3-A8OX-01 19 59061012 59061012 A T TRIM28 Silent p.V659V 0.10 TCGA-A3-A8OX-01 1 150315820 150315820 C G PRPF3 Missense_Mutation p.L440V 0.07 deleterious(0.02) possibly_damaging(0.658) TCGA-A3-A8OX-01 1 156708372 156708372 C G MRPL24 Missense_Mutation p.R42P 0.05 tolerated(0.18) possibly_damaging(0.7) TCGA-A3-A8OX-01 1 186331469 186331469 T C TPR Missense_Mutation p.N247S 0.05 benign(0.292) TCGA-A3-A8OX-01 1 23759728 23759728 G T ASAP3 Missense_Mutation p.A722D 0.05 tolerated(0.08) benign(0.13) TCGA-A3-A8OX-01 1 240371987 240371987 C G FMN2 Missense_Mutation p.P1292R 0.05 probably_damaging(0.932) TCGA-A3-A8OX-01 1 247654468 247654468 C T OR2W5 RNA 0.08 TCGA-A3-A8OX-01 1 26689541 26689541 A G ZNF683 Silent p.T373T 0.12 TCGA-A3-A8OX-01 1 62739823 62739823 A C KANK4 Missense_Mutation p.V318G 0.08 tolerated(0.46) benign(0.007) TCGA-A3-A8OX-01 20 20177230 20177230 G T C20orf26 Missense_Mutation p.R536L 0.07 deleterious(0) probably_damaging(0.987) TCGA-A3-A8OX-01 21 30426522 30426522 A T USP16 3'UTR 0.08 TCGA-A3-A8OX-01 2 113414776 113414776 G C SLC20A1 Missense_Mutation p.V246L 0.08 deleterious(0) probably_damaging(0.941) TCGA-A3-A8OX-01 2 11728933 11728933 G A GREB1 Silent p.L407L 0.10 TCGA-A3-A8OX-01 2 118688680 118688680 T A CCDC93 Missense_Mutation p.N592I 0.06 deleterious(0) possibly_damaging(0.522) TCGA-A3-A8OX-01 2 210782633 210782633 G A UNC80 Missense_Mutation p.R1655H 0.07 probably_damaging(0.993) TCGA-A3-A8OX-01 2 212248358 212248358 G T ERBB4 Missense_Mutation p.H1303Q 0.07 tolerated_low_confidence(0.88) benign(0.01) TCGA-A3-A8OX-01 2 234737564 234737564 A G MROH2A Missense_Mutation p.E1431G 0.09 deleterious(0.01) benign(0.009) TCGA-A3-A8OX-01 2 27688322 27688322 C T IFT172 Silent p.L631L 0.06 TCGA-A3-A8OX-01 2 55403026 55403026 A T CLHC1 Nonsense_Mutation p.L554* 0.09 TCGA-A3-A8OX-01 3 10183771 10183771 T A VHL Missense_Mutation p.S80R 0.14 deleterious(0) probably_damaging(0.996) TCGA-A3-A8OX-01 3 10188250 10188250 C G VHL Missense_Mutation p.N131K 0.09 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OX-01 3 136056936 136056936 G T STAG1 3'UTR 0.09 TCGA-A3-A8OX-01 3 136056937 136056937 C T STAG1 3'UTR 0.08 TCGA-A3-A8OX-01 3 171330167 171330167 A T PLD1 Silent p.A928A 0.04 TCGA-A3-A8OX-01 3 196234947 196234947 G A SMCO1 Silent p.H152H 0.07 TCGA-A3-A8OX-01 3 38628948 38628948 G A SCN5A Silent p.L793L 0.07 TCGA-A3-A8OX-01 3 69105019 69105019 A G UBA3 Missense_Mutation p.L429P 0.05 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OX-01 4 114278431 114278431 T C ANK2 Missense_Mutation p.L2886S 0.11 benign(0.012) TCGA-A3-A8OX-01 4 120481517 120481517 T G PDE5A Missense_Mutation p.D378A 0.05 tolerated(0.48) benign(0.02) TCGA-A3-A8OX-01 4 1283732 1283732 T C MAEA Missense_Mutation p.S11P 0.05 tolerated(0.38) benign(0.002) TCGA-A3-A8OX-01 5 178139851 178139851 C G ZNF354A Missense_Mutation p.G343A 0.14 tolerated(0.17) benign(0.146) TCGA-A3-A8OX-01 5 179041844 179041844 A T HNRNPH1 3'UTR 0.18 TCGA-A3-A8OX-01 5 179071054 179071054 C T C5orf60 Missense_Mutation p.G86R 0.07 tolerated(0.9) possibly_damaging(0.65) TCGA-A3-A8OX-01 5 64909962 64909962 T C TRIM23 Missense_Mutation p.Y110C 0.08 tolerated(0.18) benign(0) TCGA-A3-A8OX-01 6 161512570 161512570 G T MAP3K4 Nonsense_Mutation p.E1045* 0.09 TCGA-A3-A8OX-01 6 28294200 28294200 G T ZSCAN31 Missense_Mutation p.P322T 0.08 deleterious(0.01) probably_damaging(1) TCGA-A3-A8OX-01 7 2404148 2404148 T A EIF3B Missense_Mutation p.F381I 0.06 deleterious(0.05) possibly_damaging(0.476) TCGA-A3-A8OX-01 8 95879372 95879372 C G INTS8 Missense_Mutation p.P767R 0.08 deleterious(0) probably_damaging(0.999) TCGA-A3-A8OX-01 9 107535298 107535298 C A NIPSNAP3B Missense_Mutation p.L230I 0.06 deleterious(0.02) benign(0.35) TCGA-A3-A8OX-01 X 151143103 151143103 C T GABRE 5'UTR 0.04 TCGA-A3-A8OX-01 X 154227798 154227798 G T F8 Missense_Mutation p.T74K 0.09 deleterious(0.04) benign(0.077) TCGA-AK-3426-01 10 1055506 1055506 T - GTPBP4 Frame_Shift_Del p.L411Wfs*9 0.20 TCGA-AK-3426-01 11 120776185 120776185 G A GRIK4 Missense_Mutation p.G487R 0.12 tolerated(0.68) probably_damaging(1) TCGA-AK-3426-01 11 62569657 62569657 G A NXF1 Missense_Mutation p.P149S 0.18 deleterious(0) probably_damaging(0.96) TCGA-AK-3426-01 11 75907728 75907728 T C WNT11 Missense_Mutation p.N40D 0.11 tolerated(0.05) probably_damaging(0.98) TCGA-AK-3426-01 11 9809282 9809282 T C SBF2 Missense_Mutation p.I1646V 0.16 tolerated(0.25) benign(0.023) TCGA-AK-3426-01 12 104171509 104171509 T C NT5DC3 3'UTR 0.10 TCGA-AK-3426-01 12 104345307 104345307 A - C12orf73 Frame_Shift_Del p.K71Nfs*28 0.15 TCGA-AK-3426-01 12 32908125 32908125 G C YARS2 Missense_Mutation p.D228E 0.17 deleterious(0) probably_damaging(1) TCGA-AK-3426-01 12 7174955 7174955 T G C1S Missense_Mutation p.C359G 0.15 deleterious(0) probably_damaging(1) TCGA-AK-3426-01 14 20943267 20943267 A C PNP Missense_Mutation p.M170L 0.12 tolerated(1) benign(0.001) TCGA-AK-3426-01 14 92454666 92454666 T G TRIP11 Missense_Mutation p.D1741A 0.15 deleterious(0) probably_damaging(0.969) TCGA-AK-3426-01 16 2820865 2820865 A G SRRM2 Silent p.P2752P 0.12 TCGA-AK-3426-01 17 40063774 40063774 G A ACLY Missense_Mutation p.A223V 0.09 tolerated(0.13) benign(0.196) TCGA-AK-3426-01 17 45909296 45909296 G A LRRC46 5'UTR 0.15 TCGA-AK-3426-01 19 12841483 12841483 C A C19orf43 3'UTR 0.17 TCGA-AK-3426-01 19 17653043 17653043 A T FAM129C Silent p.A454A 0.14 TCGA-AK-3426-01 1 113459737 113459737 A G SLC16A1 Intron 0.11 TCGA-AK-3426-01 1 145585446 145585446 G C PIAS3 Missense_Mutation p.G571R 0.16 tolerated_low_confidence(0.31) benign(0.386) TCGA-AK-3426-01 1 155228674 155228674 T C SCAMP3 Missense_Mutation p.M154V 0.10 tolerated(1) benign(0.006) TCGA-AK-3426-01 1 87045773 87045773 A C CLCA4 Missense_Mutation p.E835D 0.16 tolerated(0.48) possibly_damaging(0.63) TCGA-AK-3426-01 1 94576991 94576992 - A ABCA4 Intron 0.14 TCGA-AK-3426-01 22 39917799 39917799 A G ATF4 Missense_Mutation p.D83G 0.17 deleterious(0) possibly_damaging(0.579) TCGA-AK-3426-01 2 191931230 191931230 T A STAT4 Nonsense_Mutation p.K186* 0.15 TCGA-AK-3426-01 2 73681055 73681055 G A ALMS1 Silent p.E2466E 0.16 TCGA-AK-3426-01 2 99008389 99008389 C A CNGA3 Missense_Mutation p.A210E 0.14 deleterious(0.02) benign(0.314) TCGA-AK-3426-01 3 131181477 131181478 - A MRPL3 3'UTR 0.22 TCGA-AK-3426-01 3 156234114 156234114 C T KCNAB1 Silent p.Y307Y 0.15 TCGA-AK-3426-01 4 15690353 15690353 A T FAM200B Missense_Mutation p.M585L 0.19 tolerated(0.07) benign(0) TCGA-AK-3426-01 4 52862002 52862002 A C LRRC66 Missense_Mutation p.F396V 0.19 deleterious(0.01) possibly_damaging(0.874) TCGA-AK-3426-01 4 81967700 81967700 C A BMP3 Silent p.L375L 0.12 TCGA-AK-3426-01 4 90857577 90857577 A T MMRN1 Missense_Mutation p.N916Y 0.17 tolerated(0.07) possibly_damaging(0.494) TCGA-AK-3426-01 5 133695765 133695765 G A CDKL3 Silent p.N61N 0.16 TCGA-AK-3426-01 5 159821189 159821189 C A C5orf54 Missense_Mutation p.D437Y 0.13 deleterious(0.03) benign(0.318) TCGA-AK-3426-01 5 39308460 39308460 C A C9 Missense_Mutation p.G371V 0.16 deleterious(0.03) possibly_damaging(0.795) TCGA-AK-3426-01 5 39376768 39376768 T C DAB2 Silent p.L707L 0.17 TCGA-AK-3426-01 5 94206137 94206137 G T MCTP1 Missense_Mutation p.N767K 0.11 tolerated(0.91) benign(0.165) TCGA-AK-3426-01 6 124676421 124676421 C T NKAIN2 Silent p.V67V 0.04 TCGA-AK-3426-01 6 128303991 128303991 G A PTPRK Silent p.L1180L 0.22 TCGA-AK-3426-01 6 132030953 132030953 A G CTAGE9 Missense_Mutation p.L402S 0.13 deleterious(0) probably_damaging(0.998) TCGA-AK-3426-01 7 149463195 149463195 G A ZNF467 Silent p.A132A 0.30 TCGA-AK-3426-01 8 74858968 74858968 T C TCEB1 Missense_Mutation p.Y79C 0.17 deleterious(0.02) benign(0.085) TCGA-AK-3427-01 10 1041890 1041890 G T GTPBP4 Missense_Mutation p.D81Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-AK-3427-01 10 88946959 88946959 T G FAM35A Splice_Site p.X770_splice 0.07 TCGA-AK-3427-01 11 45671742 45671742 G T CHST1 Missense_Mutation p.S244R 0.05 deleterious(0.01) possibly_damaging(0.616) TCGA-AK-3427-01 11 62744726 62744726 C T SLC22A6 Missense_Mutation p.A499T 0.40 tolerated(0.45) benign(0.045) TCGA-AK-3427-01 12 95535270 95535270 G T FGD6 Missense_Mutation p.P911T 0.41 deleterious(0.01) possibly_damaging(0.616) TCGA-AK-3427-01 14 106110141 106110141 G A IGHG2 Silent p.D159D 0.49 TCGA-AK-3427-01 14 70855304 70855304 G A SYNJ2BP Silent p.V28V 0.17 TCGA-AK-3427-01 14 86088696 86088696 C A FLRT2 Silent p.R280R 0.72 TCGA-AK-3427-01 15 59910380 59910380 T C GCNT3 Intron 0.36 TCGA-AK-3427-01 1 92430268 92430268 G T BRDT Nonsense_Mutation p.E93* 0.07 TCGA-AK-3427-01 2 102849529 102849529 G C IL1RL2 Missense_Mutation p.E414D 0.39 deleterious(0) probably_damaging(1) TCGA-AK-3427-01 2 113514753 113514755 AAC - CKAP2L In_Frame_Del p.V65del 0.47 TCGA-AK-3427-01 2 228883378 228883378 C T SPHKAP Missense_Mutation p.G731D 0.03 tolerated(0.2) benign(0.403) TCGA-AK-3427-01 2 241534490 241534490 C A CAPN10 Silent p.G349G 0.49 TCGA-AK-3427-01 3 101399963 101399967 AATCT - RPL24 3'UTR 0.20 TCGA-AK-3427-01 3 3170805 3170805 A T TRNT1 Silent p.L27L 0.25 TCGA-AK-3427-01 4 154702608 154702608 A C SFRP2 Missense_Mutation p.C295G 0.41 deleterious(0) probably_damaging(0.979) TCGA-AK-3427-01 7 100686235 100686235 G T MUC17 Missense_Mutation p.L3846F 0.31 benign(0.006) TCGA-AK-3427-01 7 107592482 107592482 G C LAMB1 Missense_Mutation p.A1089G 0.49 tolerated(0.37) benign(0.063) TCGA-AK-3427-01 7 6731556 6731556 G T ZNF12 Missense_Mutation p.H339Q 0.25 tolerated(0.46) probably_damaging(0.998) TCGA-AK-3427-01 7 70255667 70255667 G T AUTS2 Missense_Mutation p.L1155F 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-AK-3427-01 9 139272415 139272415 G C SNAPC4 Silent p.G1288G 0.44 TCGA-AK-3429-01 10 104155644 104155644 G T NFKB2 Splice_Site 0.18 TCGA-AK-3429-01 11 111946306 111946306 G A C11orf57 Missense_Mutation p.R3Q 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-AK-3429-01 12 104712708 104712708 A G TXNRD1 Missense_Mutation p.R250G 0.05 tolerated(0.07) benign(0.118) TCGA-AK-3429-01 12 124841254 124841254 G A NCOR2 Missense_Mutation p.P1059S 0.21 benign(0.063) TCGA-AK-3429-01 12 6669891 6669891 G T NOP2 Silent p.S503S 0.21 TCGA-AK-3429-01 13 25276072 25276072 G T ATP12A Splice_Site p.X634_splice 0.06 TCGA-AK-3429-01 13 28608527 28608527 G T FLT3 Missense_Mutation p.Q539K 0.24 tolerated(0.91) benign(0.025) TCGA-AK-3429-01 13 29001982 29001982 C T FLT1 Missense_Mutation p.V395I 0.07 deleterious(0) probably_damaging(0.999) TCGA-AK-3429-01 14 55005104 55005104 A G CGRRF1 3'UTR 0.11 TCGA-AK-3429-01 15 28446698 28446698 A G HERC2 Silent p.S2540S 0.19 TCGA-AK-3429-01 15 43299453 43299453 A C UBR1 Missense_Mutation p.I1080S 0.19 deleterious(0) possibly_damaging(0.46) TCGA-AK-3429-01 15 74900704 74900704 C G CTD-3154N5.1 3'Flank 0.30 TCGA-AK-3429-01 15 99670374 99670374 T C SYNM Silent p.A602A 0.27 TCGA-AK-3429-01 16 12142415 12142415 T C SNX29 Missense_Mutation p.I229T 0.20 tolerated(0.12) possibly_damaging(0.782) TCGA-AK-3429-01 16 73127625 73127625 A T HCCAT5 RNA 0.40 TCGA-AK-3429-01 17 2323872 2323872 G A METTL16 Missense_Mutation p.P361S 0.26 tolerated(0.17) benign(0.234) TCGA-AK-3429-01 18 77894266 77894266 C A ADNP2 Missense_Mutation p.P324T 0.12 deleterious(0.01) possibly_damaging(0.447) TCGA-AK-3429-01 19 17425185 17425185 C A DDA1 Nonsense_Mutation p.Y41* 0.28 TCGA-AK-3429-01 19 21992038 21992038 A G ZNF43 Silent p.F267F 0.06 TCGA-AK-3429-01 19 41257287 41257287 T A SNRPA 5'UTR 0.21 TCGA-AK-3429-01 19 50339506 50339506 C T MED25 Silent p.P663P 0.18 TCGA-AK-3429-01 19 7964517 7964517 C T LRRC8E Silent p.I370I 0.10 TCGA-AK-3429-01 1 11319454 11319454 C G MTOR Missense_Mutation p.G5R 0.25 deleterious_low_confidence(0.01) benign(0.303) TCGA-AK-3429-01 1 1275427 1275427 C A DVL1 Missense_Mutation p.M300I 0.09 deleterious(0) benign(0.216) TCGA-AK-3429-01 1 13001258 13001258 C T PRAMEF6 Missense_Mutation p.R142K 0.12 tolerated(0.85) benign(0.279) TCGA-AK-3429-01 1 29581894 29581894 C A PTPRU Silent p.R61R 0.09 TCGA-AK-3429-01 1 40980259 40980259 T G EXO5 Missense_Mutation p.S15A 0.15 tolerated_low_confidence(0.15) benign(0.007) TCGA-AK-3429-01 20 56138155 56138157 ATC - PCK1 In_Frame_Del p.I229del 0.30 TCGA-AK-3429-01 21 38507750 38507750 G A TTC3 Missense_Mutation p.R505H 0.06 tolerated(0.05) possibly_damaging(0.717) TCGA-AK-3429-01 2 191524231 191524231 C T NAB1 Missense_Mutation p.S110F 0.22 tolerated(0.09) benign(0.188) TCGA-AK-3429-01 3 142037709 142037709 A G XRN1 Silent p.L1480L 0.22 TCGA-AK-3429-01 3 167525044 167525044 A G SERPINI1 Silent p.E298E 0.05 TCGA-AK-3429-01 3 47058513 47058513 G A SETD2 3'UTR 0.27 TCGA-AK-3429-01 4 106157564 106157565 CC - TET2 Frame_Shift_Del p.T822Nfs*23 0.14 TCGA-AK-3429-01 5 135692564 135692564 G A TRPC7 Missense_Mutation p.A171V 0.10 deleterious(0) probably_damaging(0.998) TCGA-AK-3429-01 6 134495942 134495943 TC - SGK1 Intron 0.18 TCGA-AK-3429-01 7 82580448 82580448 C T PCLO Silent p.T3152T 0.07 TCGA-AK-3429-01 8 108334357 108334357 C G ANGPT1 Splice_Site p.X192_splice 0.19 TCGA-AK-3429-01 8 145737152 145737152 C A RECQL4 Missense_Mutation p.Q1138H 0.17 deleterious(0.05) benign(0.099) TCGA-AK-3429-01 9 121929960 121929960 T A BRINP1 Missense_Mutation p.Y563F 0.22 tolerated(0.15) possibly_damaging(0.899) TCGA-AK-3429-01 9 15777711 15777711 A G CCDC171 Missense_Mutation p.R929G 0.15 tolerated(0.13) benign(0.246) TCGA-AK-3429-01 9 26907861 26907861 A G PLAA Missense_Mutation p.I598T 0.03 tolerated(0.52) benign(0.003) TCGA-AK-3429-01 X 153736831 153736831 C T FAM3A Silent p.G83G 0.19 TCGA-AK-3430-01 10 225962 225962 T C ZMYND11 Silent p.L4L 0.39 TCGA-AK-3430-01 10 50574424 50574424 C A DRGX Missense_Mutation p.G182C 0.19 deleterious(0.03) benign(0.302) TCGA-AK-3430-01 10 85960393 85960393 G T CDHR1 Missense_Mutation p.A159S 0.32 deleterious(0.02) probably_damaging(0.96) TCGA-AK-3430-01 10 94669364 94669364 A C EXOC6 Missense_Mutation p.K213N 0.37 deleterious(0) benign(0.187) TCGA-AK-3430-01 11 10527578 10527578 T C AMPD3 3'UTR 0.29 TCGA-AK-3430-01 11 112072899 112072899 G C BCO2 Missense_Mutation p.E394Q 0.23 tolerated(0.05) benign(0.1) TCGA-AK-3430-01 11 118916498 118916498 C A HYOU1 Missense_Mutation p.G978V 0.49 tolerated(0.08) benign(0.027) TCGA-AK-3430-01 11 123886795 123886795 C T OR10G4 Nonsense_Mutation p.Q172* 0.31 TCGA-AK-3430-01 11 46898361 46898361 T G LRP4 Missense_Mutation p.S1100R 0.54 deleterious(0.02) benign(0.406) TCGA-AK-3430-01 11 47185833 47185833 A G C11orf49 3'Flank 0.08 TCGA-AK-3430-01 11 58381764 58381764 A G ZFP91 Silent p.G350G 0.25 TCGA-AK-3430-01 11 62886306 62886306 A C SLC22A24 Intron 0.23 TCGA-AK-3430-01 11 74340306 74340306 A - POLD3 Frame_Shift_Del p.N316Tfs*2 0.37 TCGA-AK-3430-01 11 74876867 74876867 T - SLCO2B1 Frame_Shift_Del p.F108Lfs*10 0.51 TCGA-AK-3430-01 12 49444844 49444844 G T KMT2D Nonsense_Mutation p.C874* 0.47 TCGA-AK-3430-01 12 54967242 54967242 A T PDE1B Missense_Mutation p.N314Y 0.36 deleterious(0) probably_damaging(0.912) TCGA-AK-3430-01 12 6572261 6572261 A G VAMP1 3'Flank 0.47 TCGA-AK-3430-01 12 86199472 86199472 C A RASSF9 Nonsense_Mutation p.E106* 0.45 TCGA-AK-3430-01 13 103275378 103275378 G T TPP2 Missense_Mutation p.V258L 0.48 deleterious(0.05) possibly_damaging(0.641) TCGA-AK-3430-01 13 39452971 39452971 A G FREM2 Missense_Mutation p.K2955E 0.40 deleterious(0) benign(0.129) TCGA-AK-3430-01 14 20019983 20019983 C T POTEM Missense_Mutation p.V80M 0.38 tolerated_low_confidence(0.06) probably_damaging(0.981) TCGA-AK-3430-01 14 22314803 22314803 A G TRAV8-2 5'UTR 0.10 TCGA-AK-3430-01 14 30132916 30132916 C T PRKD1 Missense_Mutation p.E229K 0.31 tolerated(0.14) benign(0.15) TCGA-AK-3430-01 14 71462491 71462491 A G PCNX Silent p.T826T 0.10 TCGA-AK-3430-01 14 81736986 81736986 G A STON2 Intron 0.30 TCGA-AK-3430-01 14 81736987 81736987 C T STON2 Intron 0.30 TCGA-AK-3430-01 15 34673786 34673786 G T GOLGA8A Missense_Mutation p.S546R 0.37 deleterious(0) probably_damaging(0.987) TCGA-AK-3430-01 15 48764807 48764807 C A FBN1 Missense_Mutation p.G1426V 0.47 probably_damaging(0.987) TCGA-AK-3430-01 16 29810383 29810383 A - KIF22 Frame_Shift_Del p.K213Sfs*22 0.35 TCGA-AK-3430-01 16 58149294 58149294 T C C16orf80 Missense_Mutation p.K115R 0.05 tolerated(0.21) benign(0.073) TCGA-AK-3430-01 16 81094757 81094757 C G C16orf46 3'UTR 0.22 TCGA-AK-3430-01 17 11701016 11701016 C - DNAH9 Frame_Shift_Del p.L2776Ffs*2 0.37 TCGA-AK-3430-01 17 29857420 29857420 A G RAB11FIP4 Missense_Mutation p.N577S 0.49 tolerated(0.28) benign(0.196) TCGA-AK-3430-01 17 34913158 34913158 C - GGNBP2 Frame_Shift_Del p.T137Nfs*10 0.20 TCGA-AK-3430-01 17 39889026 39889026 G A HAP1 Missense_Mutation p.P165L 0.23 deleterious(0) benign(0.192) TCGA-AK-3430-01 17 56581545 56581546 - GT MTMR4 Frame_Shift_Ins p.G508Tfs*118 0.36 TCGA-AK-3430-01 17 9503464 9503464 G A WDR16 Silent p.L239L 0.04 TCGA-AK-3430-01 19 33706702 33706702 A G SLC7A10 Missense_Mutation p.V110A 0.08 deleterious(0) possibly_damaging(0.73) TCGA-AK-3430-01 19 42821885 42821886 - AC TMEM145 Frame_Shift_Ins p.Y311Rfs*58 0.17 TCGA-AK-3430-01 19 48977567 48977567 C T CYTH2 Silent p.L226L 0.35 TCGA-AK-3430-01 19 55239272 55239272 C T KIR3DL3 Missense_Mutation p.P184L 0.21 deleterious(0.01) benign(0.415) TCGA-AK-3430-01 19 5699170 5699170 A T LONP1 Missense_Mutation p.I518N 0.55 deleterious(0) probably_damaging(0.996) TCGA-AK-3430-01 19 57910589 57910590 - T ZNF548 Frame_Shift_Ins p.R324Mfs*15 0.34 TCGA-AK-3430-01 1 111990200 111990200 T A WDR77 Splice_Site p.X101_splice 0.49 TCGA-AK-3430-01 1 156025137 156025137 A C LAMTOR2 Missense_Mutation p.N51T 0.17 deleterious(0) possibly_damaging(0.772) TCGA-AK-3430-01 1 16913638 16913638 T G NBPF1 Missense_Mutation p.I229L 0.29 tolerated(0.18) benign(0.068) TCGA-AK-3430-01 1 179620176 179620176 G C TDRD5 Missense_Mutation p.V659L 0.22 tolerated(0.06) possibly_damaging(0.55) TCGA-AK-3430-01 1 1919956 1919956 C A C1orf222 Missense_Mutation p.K88N 0.21 deleterious(0) possibly_damaging(0.895) TCGA-AK-3430-01 1 19499967 19499967 C A UBR4 Missense_Mutation p.R1044L 0.22 benign(0.302) TCGA-AK-3430-01 1 198723495 198723495 G T PTPRC Missense_Mutation p.A1203S 0.35 tolerated(1) benign(0.023) TCGA-AK-3430-01 1 215823997 215823998 - T USH2A Frame_Shift_Ins p.P4761Afs*19 0.24 TCGA-AK-3430-01 1 31836865 31836884 AATTTTCTTTTCAGGAGAAG - ZCCHC17 Splice_Site p.X189_splice 0.12 TCGA-AK-3430-01 1 67147913 67147913 T - SGIP1 Frame_Shift_Del p.Y393Tfs*2 0.32 TCGA-AK-3430-01 20 10603312 10603312 A C SLX4IP Missense_Mutation p.K171T 0.21 deleterious(0) possibly_damaging(0.545) TCGA-AK-3430-01 20 2464292 2464292 A - ZNF343 Frame_Shift_Del p.C439Afs*172 0.36 TCGA-AK-3430-01 20 57429460 57429460 C A GNAS Silent p.S380S 0.36 TCGA-AK-3430-01 21 19725219 19725219 C A TMPRSS15 Splice_Site p.X391_splice 0.64 TCGA-AK-3430-01 22 17472966 17472966 C G GAB4 Missense_Mutation p.R92P 0.23 deleterious(0) benign(0.35) TCGA-AK-3430-01 22 25282686 25282686 A C SGSM1 Missense_Mutation p.E642D 0.33 tolerated(0.31) benign(0.002) TCGA-AK-3430-01 22 50689480 50689480 C A HDAC10 5'UTR 0.33 TCGA-AK-3430-01 2 138434352 138434352 G T THSD7B 3'UTR 0.38 TCGA-AK-3430-01 2 160983104 160983104 C A ITGB6 Missense_Mutation p.D557Y 0.32 tolerated(0.05) benign(0.034) TCGA-AK-3430-01 2 216177160 216177160 G A ATIC Intron 0.22 TCGA-AK-3430-01 2 24469086 24469086 A G ITSN2 Silent p.D1163D 0.37 TCGA-AK-3430-01 2 61647969 61647969 C G USP34 Splice_Site p.X15_splice 0.04 TCGA-AK-3430-01 2 99779609 99779609 G T LIPT1 3'UTR 0.35 TCGA-AK-3430-01 3 121151237 121151237 C G POLQ Missense_Mutation p.E2563Q 0.07 deleterious(0) probably_damaging(1) TCGA-AK-3430-01 3 14940264 14940264 A G FGD5 Missense_Mutation p.S1029G 0.10 tolerated(1) benign(0) TCGA-AK-3430-01 3 38061715 38061715 A G PLCD1 Missense_Mutation p.S76P 0.08 deleterious(0.02) benign(0.414) TCGA-AK-3430-01 3 52702551 52702551 A - PBRM1 Frame_Shift_Del p.F116Sfs*58 0.44 TCGA-AK-3430-01 4 110909739 110909739 G T EGF Splice_Site p.X870_splice 0.37 TCGA-AK-3430-01 4 121958431 121958431 C A NDNF Missense_Mutation p.S232I 0.35 tolerated(0.11) benign(0.01) TCGA-AK-3430-01 4 24572443 24572443 G A DHX15 Nonsense_Mutation p.R179* 0.37 TCGA-AK-3430-01 4 24572444 24572444 C T DHX15 Missense_Mutation p.M178I 0.36 tolerated(0.39) benign(0.053) TCGA-AK-3430-01 4 68338222 68338222 T A CENPC 3'UTR 0.41 TCGA-AK-3430-01 5 132160424 132160424 G A SHROOM1 Missense_Mutation p.T375I 0.39 tolerated(0.06) benign(0.024) TCGA-AK-3430-01 5 140481633 140481633 C - PCDHB3 Frame_Shift_Del p.L468Cfs*19 0.36 TCGA-AK-3430-01 5 149212567 149212567 C T PPARGC1B Missense_Mutation p.P311S 0.28 tolerated(0.25) benign(0.008) TCGA-AK-3430-01 5 158250251 158250251 A G EBF1 Silent p.N237N 0.40 TCGA-AK-3430-01 5 158710292 158710292 A C UBLCP1 Missense_Mutation p.K292Q 0.47 tolerated(0.54) benign(0.181) TCGA-AK-3430-01 5 37168941 37168941 T C C5orf42 Silent p.K2395K 0.36 TCGA-AK-3430-01 5 41313678 41313678 A G PLCXD3 3'UTR 0.08 TCGA-AK-3430-01 5 66479407 66479407 G A CD180 Silent p.L422L 0.40 TCGA-AK-3430-01 5 78573870 78573870 G A JMY Missense_Mutation p.M390I 0.35 deleterious(0.04) benign(0.441) TCGA-AK-3430-01 6 121769154 121769154 A C GJA1 3'UTR 0.43 TCGA-AK-3430-01 6 135784317 135784317 T - AHI1 Frame_Shift_Del p.M293Cfs*34 0.10 TCGA-AK-3430-01 6 25850134 25850134 A G SLC17A3 Silent p.N390N 0.31 TCGA-AK-3430-01 7 147336210 147336210 G A CNTNAP2 Nonsense_Mutation p.W637* 0.30 TCGA-AK-3430-01 7 22771126 22771126 T G IL6 Silent p.T191T 0.32 TCGA-AK-3430-01 7 24331365 24331365 A T NPY 3'UTR 0.10 TCGA-AK-3430-01 7 77256021 77256021 G A PTPN12 Splice_Site p.X342_splice 0.36 TCGA-AK-3430-01 8 110587762 110587762 G A SYBU Silent p.D455D 0.22 TCGA-AK-3430-01 8 12592860 12592860 T G LONRF1 Missense_Mutation p.N501H 0.47 deleterious(0.04) probably_damaging(0.981) TCGA-AK-3430-01 8 15977930 15977930 G C MSR1 Missense_Mutation p.Q407E 0.50 tolerated(0.11) benign(0.01) TCGA-AK-3430-01 8 61763106 61763106 G A CHD7 Missense_Mutation p.R1820Q 0.26 probably_damaging(0.984) TCGA-AK-3430-01 X 102004560 102004560 G A BHLHB9 Missense_Mutation p.D213N 0.79 tolerated(0.07) possibly_damaging(0.871) TCGA-AK-3430-01 X 13636139 13636139 A T EGFL6 Missense_Mutation p.I357L 0.77 tolerated(0.3) benign(0.01) TCGA-AK-3430-01 X 154490261 154490261 C T RAB39B Missense_Mutation p.A157T 0.42 deleterious(0.04) possibly_damaging(0.72) TCGA-AK-3430-01 X 53223903 53223905 CTC TT KDM5C Frame_Shift_Del p.E1152Kfs*112 0.54 TCGA-AK-3436-01 10 104184284 104184284 T A CUEDC2 Silent p.S84S 0.19 TCGA-AK-3436-01 10 5494480 5494480 C T NET1 Missense_Mutation p.R175W 0.22 deleterious(0) probably_damaging(1) TCGA-AK-3436-01 10 67680122 67680122 A T CTNNA3 Missense_Mutation p.V885D 0.07 deleterious(0) unknown(0) TCGA-AK-3436-01 11 57414584 57414584 G A YPEL4 5'UTR 0.26 TCGA-AK-3436-01 11 92088147 92088147 T C FAT3 Missense_Mutation p.W957R 0.20 probably_damaging(1) TCGA-AK-3436-01 12 111923629 111923629 G A ATXN2 Missense_Mutation p.A942V 0.19 benign(0.313) TCGA-AK-3436-01 12 121206288 121206288 A T SPPL3 Missense_Mutation p.F205I 0.29 deleterious(0) probably_damaging(0.998) TCGA-AK-3436-01 12 123003401 123003401 G T RSRC2 Missense_Mutation p.S128Y 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-AK-3436-01 12 132862863 132862863 C A GALNT9 Missense_Mutation p.R131L 0.09 deleterious(0) probably_damaging(0.999) TCGA-AK-3436-01 12 52842629 52842629 C A KRT6B Missense_Mutation p.K400N 0.19 deleterious(0.04) possibly_damaging(0.708) TCGA-AK-3436-01 12 57577934 57577934 G A LRP1 Missense_Mutation p.R1999H 0.15 probably_damaging(1) TCGA-AK-3436-01 12 78392214 78392214 G A NAV3 Missense_Mutation p.D280N 0.15 deleterious(0) probably_damaging(0.998) TCGA-AK-3436-01 13 39451341 39451341 A G FREM2 Missense_Mutation p.M2878V 0.45 tolerated(0.05) benign(0.035) TCGA-AK-3436-01 14 23887232 23887232 G T MYH7 Intron 0.27 TCGA-AK-3436-01 15 57458628 57458628 C A TCF12 Silent p.S118S 0.24 TCGA-AK-3436-01 15 80452758 80452758 C T FAH Silent p.F107F 0.42 TCGA-AK-3436-01 17 10408350 10408350 C T MYH1 Missense_Mutation p.R823H 0.30 deleterious(0) probably_damaging(0.998) TCGA-AK-3436-01 17 10409332 10409332 G C MYH1 Missense_Mutation p.P685A 0.30 deleterious(0.02) benign(0.003) TCGA-AK-3436-01 19 11728757 11728757 G C ZNF627 3'UTR 0.43 TCGA-AK-3436-01 19 11728758 11728758 C A ZNF627 3'UTR 0.40 TCGA-AK-3436-01 19 53912659 53912659 C T ZNF765 3'UTR 0.16 TCGA-AK-3436-01 19 55670934 55670934 G T DNAAF3 Missense_Mutation p.A469E 0.38 deleterious(0) probably_damaging(0.978) TCGA-AK-3436-01 19 55686305 55686305 G A SYT5 Silent p.T257T 0.17 TCGA-AK-3436-01 19 9325393 9325393 C T OR7D4 Missense_Mutation p.G41R 0.21 deleterious(0.01) benign(0.298) TCGA-AK-3436-01 1 153271694 153271694 G A PGLYRP3 Nonsense_Mutation p.Q248* 0.31 TCGA-AK-3436-01 1 155449218 155449218 G A ASH1L Missense_Mutation p.T1148I 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AK-3436-01 1 17739593 17739593 C T RCC2 Nonsense_Mutation p.W430* 0.27 TCGA-AK-3436-01 1 62288675 62288675 A G INADL Missense_Mutation p.H581R 0.25 deleterious(0) probably_damaging(0.973) TCGA-AK-3436-01 1 79387470 79387470 A C ELTD1 Missense_Mutation p.V362G 0.29 tolerated(0.34) benign(0.017) TCGA-AK-3436-01 20 48273175 48273175 G A B4GALT5 Silent p.I60I 0.41 TCGA-AK-3436-01 21 15592035 15592035 A T RBM11 Missense_Mutation p.Q83L 0.42 deleterious(0) probably_damaging(0.985) TCGA-AK-3436-01 2 103281704 103281704 C G SLC9A2 Missense_Mutation p.T300S 0.46 tolerated(0.37) probably_damaging(0.998) TCGA-AK-3436-01 2 170885902 170885902 T A UBR3 Silent p.I1500I 0.22 TCGA-AK-3436-01 2 201533423 201533423 G T AOX1 Missense_Mutation p.G1232V 0.21 deleterious(0.01) probably_damaging(1) TCGA-AK-3436-01 2 209108295 209108295 T G IDH1 Missense_Mutation p.Q185P 0.47 deleterious_low_confidence(0.02) benign(0.217) TCGA-AK-3436-01 2 210889826 210889826 G A KANSL1L Splice_Site p.X855_splice 0.21 TCGA-AK-3436-01 2 50149352 50149352 T A NRXN1 Silent p.P1458P 0.27 TCGA-AK-3436-01 2 70122252 70122252 C T SNRNP27 Missense_Mutation p.R21W 0.31 deleterious_low_confidence(0) unknown(0) TCGA-AK-3436-01 2 74087228 74087228 T C STAMBP Missense_Mutation p.C390R 0.26 deleterious(0) possibly_damaging(0.873) TCGA-AK-3436-01 3 150659493 150659493 G T CLRN1 Silent p.L103L 0.30 TCGA-AK-3436-01 3 160156326 160156326 G C TRIM59 Missense_Mutation p.Q216E 0.36 tolerated(1) benign(0.002) TCGA-AK-3436-01 3 164905601 164905601 G C SLITRK3 3'UTR 0.12 TCGA-AK-3436-01 3 52621464 52621464 G A PBRM1 Intron 0.57 TCGA-AK-3436-01 4 103723780 103723780 G A UBE2D3 Nonsense_Mutation p.Q48* 0.25 TCGA-AK-3436-01 4 108608293 108608293 A C PAPSS1 Nonsense_Mutation p.L151* 0.29 TCGA-AK-3436-01 4 153564272 153564272 A T TMEM154 Missense_Mutation p.L149H 0.24 deleterious(0) probably_damaging(0.966) TCGA-AK-3436-01 4 159789371 159789371 C A FNIP2 Missense_Mutation p.S528Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-AK-3436-01 4 75485873 75485873 G A AREGB Missense_Mutation p.G178S 0.29 deleterious(0) probably_damaging(1) TCGA-AK-3436-01 5 21760751 21760751 G T CDH12 Missense_Mutation p.L517I 0.15 deleterious(0.01) benign(0.016) TCGA-AK-3436-01 5 6312489 6312489 C T CTD-2324F15.2 RNA 0.12 TCGA-AK-3436-01 6 25926075 25926075 C T SLC17A2 5'UTR 0.27 TCGA-AK-3436-01 7 43918173 43918173 C G URGCP Missense_Mutation p.D297H 0.14 deleterious(0) probably_damaging(0.984) TCGA-AK-3436-01 7 77469587 77469587 C G PHTF2 Silent p.V5V 0.17 TCGA-AK-3436-01 8 108348486 108348486 G T ANGPT1 Missense_Mutation p.T156N 0.22 deleterious(0.01) possibly_damaging(0.809) TCGA-AK-3436-01 9 86554330 86554330 A G C9orf64 3'UTR 0.18 TCGA-AK-3436-01 X 105139434 105139434 T C NRK Silent p.A166A 0.08 TCGA-AK-3436-01 X 123025168 123025168 T C XIAP Splice_Site p.X352_splice 0.09 TCGA-AK-3436-01 X 49143162 49143162 G A PPP1R3F Silent p.G670G 0.87 TCGA-AK-3440-01 11 31616324 31616324 C T ELP4 Missense_Mutation p.P130L 0.34 deleterious(0) probably_damaging(0.999) TCGA-AK-3440-01 11 5536180 5536180 T A UBQLNL 3'UTR 0.06 TCGA-AK-3440-01 12 57972099 57972099 G A KIF5A Missense_Mutation p.E838K 0.44 deleterious(0.02) benign(0.211) TCGA-AK-3440-01 13 84454064 84454064 G A SLITRK1 Missense_Mutation p.H527Y 0.84 tolerated(0.16) benign(0.061) TCGA-AK-3440-01 13 92003640 92003640 G C MIR17HG RNA 0.82 TCGA-AK-3440-01 14 61438988 61438988 C T TRMT5 3'UTR 0.51 TCGA-AK-3440-01 15 27777970 27777970 C T GABRG3 Silent p.F449F 0.61 TCGA-AK-3440-01 15 28491151 28491151 G A HERC2 Silent p.L1151L 0.51 TCGA-AK-3440-01 16 48218462 48218462 C A ABCC11 Missense_Mutation p.R1049S 0.29 deleterious(0.03) possibly_damaging(0.513) TCGA-AK-3440-01 16 48218463 48218463 C A ABCC11 Missense_Mutation p.R1049M 0.30 deleterious(0) probably_damaging(0.971) TCGA-AK-3440-01 16 71610149 71610149 C T TAT Missense_Mutation p.R57Q 0.47 deleterious(0) probably_damaging(0.998) TCGA-AK-3440-01 17 41852151 41852152 TG - DUSP3 Frame_Shift_Del p.Q94Gfs*9 0.14 TCGA-AK-3440-01 17 7579699 7579699 C A TP53 Splice_Site p.X32_splice 0.85 TCGA-AK-3440-01 19 41133075 41133075 G A LTBP4 Missense_Mutation p.R1460H 0.57 deleterious(0.04) probably_damaging(0.97) TCGA-AK-3440-01 19 55993042 55993042 C - ZNF628 Frame_Shift_Del p.S162Afs*265 0.48 TCGA-AK-3440-01 1 84700917 84700917 G C PRKACB Missense_Mutation p.D376H 0.04 deleterious(0) probably_damaging(0.975) TCGA-AK-3440-01 20 23545640 23545640 G A CST9L Missense_Mutation p.P130L 0.41 deleterious(0) probably_damaging(0.997) TCGA-AK-3440-01 2 85829198 85829198 G A TMEM150A 5'UTR 0.88 TCGA-AK-3440-01 3 136676796 136676796 G A IL20RB 5'UTR 0.58 TCGA-AK-3440-01 4 79522703 79522703 G T ANXA3 Missense_Mutation p.R257I 0.42 deleterious(0) benign(0.397) TCGA-AK-3440-01 6 36298372 36298372 C T C6orf222 Nonsense_Mutation p.W32* 0.85 TCGA-AK-3440-01 8 131127939 131127939 C T ASAP1 Missense_Mutation p.V703I 0.09 deleterious(0.02) probably_damaging(0.941) TCGA-AK-3440-01 9 130206998 130207012 AGGCCTTCAGTTACT - ZNF79 In_Frame_Del p.K340_C345delinsS 0.39 TCGA-AK-3440-01 9 73206031 73206031 C G TRPM3 Missense_Mutation p.E1035Q 0.06 tolerated(0.07) possibly_damaging(0.555) TCGA-AK-3440-01 X 14038421 14038421 C A GEMIN8 Missense_Mutation p.W83L 0.92 tolerated(0.65) benign(0.006) TCGA-AK-3443-01 13 88330615 88330615 G C SLITRK5 3'UTR 0.09 TCGA-AK-3443-01 14 50626628 50626628 T C SOS2 Missense_Mutation p.H458R 0.42 tolerated(0.33) possibly_damaging(0.772) TCGA-AK-3443-01 16 22826356 22826356 C T HS3ST2 Missense_Mutation p.A142V 0.38 deleterious(0) probably_damaging(0.973) TCGA-AK-3443-01 16 81190482 81190482 G A PKD1L2 RNA 0.41 TCGA-AK-3443-01 17 80014617 80014617 G A GPS1 Missense_Mutation p.S450N 0.11 tolerated(0.35) benign(0.001) TCGA-AK-3443-01 19 10461329 10461329 A G TYK2 3'UTR 0.43 TCGA-AK-3443-01 19 55179641 55179641 T A LILRB4 3'UTR 0.46 TCGA-AK-3443-01 1 40919898 40919898 G T ZFP69B Nonsense_Mutation p.E51* 0.11 TCGA-AK-3443-01 22 30384486 30384486 A G MTMR3 Missense_Mutation p.I76M 0.41 tolerated(0.09) possibly_damaging(0.886) TCGA-AK-3443-01 22 38536025 38536025 T G PLA2G6 Missense_Mutation p.Y254S 0.37 deleterious(0.01) benign(0.342) TCGA-AK-3443-01 2 220307861 220307861 G A SPEG Intron 0.35 TCGA-AK-3443-01 2 69093688 69093688 G A BMP10 Missense_Mutation p.P117L 0.49 tolerated(0.1) benign(0.105) TCGA-AK-3443-01 5 140482593 140482593 C A PCDHB3 Missense_Mutation p.P787H 0.06 deleterious_low_confidence(0.05) benign(0) TCGA-AK-3443-01 7 30066129 30066129 C T FKBP14 5'UTR 0.38 TCGA-AK-3443-01 8 20107349 20107349 G A LZTS1 Missense_Mutation p.R559C 0.07 deleterious(0.02) probably_damaging(0.93) TCGA-AK-3444-01 10 103565869 103565869 C T MGEA5 Silent p.V228V 0.34 TCGA-AK-3444-01 10 3151561 3151561 A G PFKP Silent p.G326G 0.31 TCGA-AK-3444-01 10 5808591 5808591 G C GDI2 Silent p.V334V 0.05 TCGA-AK-3444-01 10 93668183 93668183 C T FGFBP3 Missense_Mutation p.G182S 0.30 tolerated(0.81) benign(0.412) TCGA-AK-3444-01 10 96112093 96112093 A - NOC3L Frame_Shift_Del p.L309Wfs*16 0.25 TCGA-AK-3444-01 11 115102194 115102194 C T CADM1 Silent p.L147L 0.32 TCGA-AK-3444-01 11 19259497 19259497 G A E2F8 Silent p.L66L 0.07 TCGA-AK-3444-01 11 22364829 22364829 A C SLC17A6 Missense_Mutation p.M126L 0.30 tolerated(1) benign(0.002) TCGA-AK-3444-01 11 4674702 4674702 T G OR51E1 Missense_Mutation p.S316A 0.32 tolerated(0.47) benign(0.001) TCGA-AK-3444-01 11 56468430 56468430 C T OR9G1 Silent p.G189G 0.07 TCGA-AK-3444-01 11 61908398 61908398 T C INCENP Missense_Mutation p.L492P 0.29 deleterious(0.04) unknown(0) TCGA-AK-3444-01 11 6806985 6806985 C T OR2AG1 Silent p.V239V 0.11 TCGA-AK-3444-01 11 93779079 93779079 A C HEPHL1 Silent p.S137S 0.17 TCGA-AK-3444-01 12 106772092 106772092 G C POLR3B Missense_Mutation p.E182Q 0.18 deleterious(0) probably_damaging(1) TCGA-AK-3444-01 12 12278312 12278312 C T LRP6 Missense_Mutation p.S1456N 0.08 tolerated(0.14) possibly_damaging(0.754) TCGA-AK-3444-01 12 133226298 133226298 T - POLE Frame_Shift_Del p.I1254Sfs*107 0.34 TCGA-AK-3444-01 12 22354654 22354654 A T ST8SIA1 Missense_Mutation p.N301K 0.41 deleterious(0.03) benign(0.122) TCGA-AK-3444-01 12 41337895 41337895 C T CNTN1 Missense_Mutation p.L536F 0.07 deleterious(0) probably_damaging(0.975) TCGA-AK-3444-01 12 41337962 41337962 G T CNTN1 Missense_Mutation p.R558M 0.07 deleterious(0) probably_damaging(0.985) TCGA-AK-3444-01 12 78362323 78362323 C G NAV3 Missense_Mutation p.A171G 0.20 deleterious(0) benign(0.055) TCGA-AK-3444-01 12 9305466 9305466 C G PZP Missense_Mutation p.D1359H 0.38 deleterious(0.02) probably_damaging(0.994) TCGA-AK-3444-01 13 111335435 111335435 T - CARS2 Frame_Shift_Del p.K206Nfs*71 0.36 TCGA-AK-3444-01 14 102516411 102516411 T G DYNC1H1 Missense_Mutation p.L4563W 0.32 probably_damaging(0.998) TCGA-AK-3444-01 14 52472479 52472479 C T NID2 Missense_Mutation p.A1365T 0.18 tolerated(0.31) possibly_damaging(0.484) TCGA-AK-3444-01 15 20642577 20642577 T C HERC2P3 RNA 0.32 TCGA-AK-3444-01 15 35045023 35045023 C T GJD2 Missense_Mutation p.A208T 0.35 tolerated(0.19) possibly_damaging(0.606) TCGA-AK-3444-01 15 41136788 41136788 C T SPINT1 Silent p.L12L 0.38 TCGA-AK-3444-01 15 43552757 43552757 C A TGM5 Missense_Mutation p.D11Y 0.35 deleterious(0) probably_damaging(1) TCGA-AK-3444-01 15 95001402 95001402 A G MCTP2 Missense_Mutation p.M763V 0.33 deleterious(0.02) possibly_damaging(0.81) TCGA-AK-3444-01 16 47497874 47497874 G T PHKB Intron 0.05 TCGA-AK-3444-01 16 66976070 66976070 C G CES2 Silent p.P464P 0.41 TCGA-AK-3444-01 16 69744708 69744708 T A NQO1 3'UTR 0.33 TCGA-AK-3444-01 17 18188466 18188466 T A TOP3A Nonsense_Mutation p.K623* 0.35 TCGA-AK-3444-01 17 39122859 39122859 C T KRT39 Missense_Mutation p.D84N 0.05 tolerated(0.62) benign(0.006) TCGA-AK-3444-01 17 43112204 43112204 A G DCAKD Missense_Mutation p.V17A 0.19 deleterious(0) probably_damaging(0.999) TCGA-AK-3444-01 17 46198653 46198653 A C SNX11 Missense_Mutation p.E199A 0.16 tolerated_low_confidence(0.06) benign(0.011) TCGA-AK-3444-01 17 53398085 53398085 G A HLF Missense_Mutation p.A245T 0.17 deleterious(0) probably_damaging(1) TCGA-AK-3444-01 17 6023803 6023803 T A WSCD1 Missense_Mutation p.L517Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-AK-3444-01 17 73898001 73898001 G C MRPL38 Missense_Mutation p.A128G 0.13 tolerated(0.06) benign(0.002) TCGA-AK-3444-01 17 76116777 76116777 C T TMC6 Missense_Mutation p.V558I 0.31 tolerated(1) benign(0.006) TCGA-AK-3444-01 18 19996490 19996491 - T CTAGE1 Frame_Shift_Ins p.A429Sfs*3 0.26 TCGA-AK-3444-01 18 9516929 9516929 G - RALBP1 Frame_Shift_Del p.V111Ffs*17 0.30 TCGA-AK-3444-01 19 12921170 12921170 G C RNASEH2A Missense_Mutation p.E197Q 0.28 deleterious(0) probably_damaging(0.995) TCGA-AK-3444-01 19 33183154 33183154 C A NUDT19 Missense_Mutation p.F96L 0.31 tolerated(0.68) benign(0) TCGA-AK-3444-01 19 34984527 34984527 C A WTIP Missense_Mutation p.T344K 0.04 tolerated(1) probably_damaging(0.978) TCGA-AK-3444-01 19 42848626 42848626 C A MEGF8 Missense_Mutation p.L608I 0.20 tolerated(0.36) probably_damaging(0.962) TCGA-AK-3444-01 19 42912198 42912198 C T LIPE Missense_Mutation p.R529Q 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-AK-3444-01 19 4298004 4298004 T C TMIGD2 Missense_Mutation p.T129A 0.24 deleterious(0.01) possibly_damaging(0.874) TCGA-AK-3444-01 19 50098148 50098148 C A PRR12 Missense_Mutation p.H186N 0.29 benign(0.216) TCGA-AK-3444-01 19 994079 994079 A G WDR18 Missense_Mutation p.M387V 0.25 tolerated(0.3) benign(0.001) TCGA-AK-3444-01 1 114394727 114394727 C A PTPN22 Splice_Site p.X251_splice 0.30 TCGA-AK-3444-01 1 142803433 142803433 G C RP11-423O2.5 RNA 0.13 TCGA-AK-3444-01 1 153303264 153303264 G C PGLYRP4 Silent p.T367T 0.25 TCGA-AK-3444-01 1 171509126 171509126 G A PRRC2C Missense_Mutation p.D839N 0.27 unknown(0) TCGA-AK-3444-01 1 1721888 1721888 T G GNB1 Missense_Mutation p.E215D 0.29 tolerated(0.83) benign(0) TCGA-AK-3444-01 1 27097703 27097703 C T ARID1A Nonsense_Mutation p.Q1098* 0.09 TCGA-AK-3444-01 1 32696854 32696854 T G EIF3I 3'UTR 0.35 TCGA-AK-3444-01 1 35365794 35365799 GCTGCC - DLGAP3 In_Frame_Del p.G395_S396del 0.69 TCGA-AK-3444-01 1 44596402 44596402 G T KLF17 Missense_Mutation p.D382Y 0.26 tolerated(0.06) possibly_damaging(0.753) TCGA-AK-3444-01 1 55457606 55457606 G T TMEM61 Missense_Mutation p.A155S 0.37 tolerated(0.27) benign(0.115) TCGA-AK-3444-01 1 63902501 63902506 TCTCAG - ALG6 In_Frame_Del p.S446_V447del 0.34 TCGA-AK-3444-01 20 62730060 62730060 C T OPRL1 Missense_Mutation p.R341W 0.07 deleterious(0.02) benign(0.28) TCGA-AK-3444-01 21 42598262 42598262 A T BACE2 Missense_Mutation p.T128S 0.19 tolerated(0.67) benign(0) TCGA-AK-3444-01 21 43529671 43529671 G A UMODL1 Splice_Site p.X507_splice 0.22 TCGA-AK-3444-01 22 50518782 50518782 G T MLC1 Missense_Mutation p.N104K 0.30 tolerated_low_confidence(0.51) benign(0.008) TCGA-AK-3444-01 2 120388454 120388454 G T PCDP1 Missense_Mutation p.D651Y 0.23 deleterious(0.02) possibly_damaging(0.583) TCGA-AK-3444-01 2 128757928 128757928 G A SAP130 Missense_Mutation p.H350Y 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AK-3444-01 2 128757929 128757929 A G SAP130 Silent p.S349S 0.27 TCGA-AK-3444-01 2 152422253 152422254 - A NEB Frame_Shift_Ins p.K6080* 0.13 TCGA-AK-3444-01 2 179460510 179460510 A G TTN Missense_Mutation p.F19191L 0.31 TCGA-AK-3444-01 2 212530141 212530141 C A ERBB4 Missense_Mutation p.C593F 0.28 deleterious(0) probably_damaging(0.986) TCGA-AK-3444-01 2 241465702 241465702 A G ANKMY1 Missense_Mutation p.F283L 0.24 tolerated(1) benign(0.001) TCGA-AK-3444-01 2 241570154 241570154 G A GPR35 Missense_Mutation p.S293N 0.04 deleterious(0) possibly_damaging(0.908) TCGA-AK-3444-01 2 39281850 39281850 T G SOS1 Missense_Mutation p.M209L 0.10 tolerated(0.17) benign(0.011) TCGA-AK-3444-01 2 45832575 45832575 T A SRBD1 Silent p.S2S 0.49 TCGA-AK-3444-01 2 71909676 71909676 T A DYSF Missense_Mutation p.F2064I 0.21 deleterious(0) probably_damaging(0.995) TCGA-AK-3444-01 2 87211964 87211964 C T RGPD1 Missense_Mutation p.P882L 0.11 deleterious(0) benign(0.102) TCGA-AK-3444-01 3 10183725 10183725 C A VHL Nonsense_Mutation p.S65* 0.54 TCGA-AK-3444-01 3 124211627 124211627 T G KALRN Missense_Mutation p.I1575S 0.41 deleterious(0) probably_damaging(0.989) TCGA-AK-3444-01 3 129324804 129324804 G A PLXND1 Silent p.L227L 0.21 TCGA-AK-3444-01 3 130400403 130400403 C G PIK3R4 Missense_Mutation p.D1214H 0.08 deleterious(0.01) probably_damaging(1) TCGA-AK-3444-01 3 150398270 150398270 G T FAM194A Missense_Mutation p.H366N 0.31 tolerated(0.54) benign(0.001) TCGA-AK-3444-01 3 182987783 182987783 A G B3GNT5 Missense_Mutation p.H66R 0.32 tolerated(0.93) benign(0) TCGA-AK-3444-01 3 184922240 184922240 C T EHHADH Missense_Mutation p.A292T 0.37 tolerated(0.47) benign(0.027) TCGA-AK-3444-01 3 39307167 39307167 A - CX3CR1 Frame_Shift_Del p.E311Rfs*10 0.16 TCGA-AK-3444-01 3 8673776 8673776 C A SSUH2 Missense_Mutation p.S120I 0.46 deleterious(0) benign(0.369) TCGA-AK-3444-01 4 123855337 123855337 G A SPATA5 Silent p.G197G 0.06 TCGA-AK-3444-01 4 148555434 148555434 C T TMEM184C Missense_Mutation p.S389F 0.08 tolerated(0.08) benign(0.06) TCGA-AK-3444-01 4 164087992 164087992 C T NAF1 5'UTR 0.26 TCGA-AK-3444-01 5 137223116 137223116 T G MYOT 3'UTR 0.26 TCGA-AK-3444-01 5 13865955 13865955 C A DNAH5 Missense_Mutation p.G1393C 0.37 probably_damaging(0.965) TCGA-AK-3444-01 5 140724196 140724196 C T PCDHGA3 Missense_Mutation p.A199V 0.21 tolerated_low_confidence(0.13) benign(0.062) TCGA-AK-3444-01 5 176524604 176524604 A C FGFR4 Missense_Mutation p.D779A 0.43 deleterious(0) unknown(0) TCGA-AK-3444-01 6 157522543 157522543 G - ARID1B Frame_Shift_Del p.I1606Sfs*8 0.32 TCGA-AK-3444-01 6 158464376 158464376 C A SYNJ2 Missense_Mutation p.S247Y 0.32 deleterious(0) probably_damaging(1) TCGA-AK-3444-01 6 159457430 159457430 C - TAGAP Frame_Shift_Del p.G542Vfs*30 0.29 TCGA-AK-3444-01 6 170627090 170627090 C T FAM120B Silent p.V204V 0.31 TCGA-AK-3444-01 6 31084879 31084879 C G CDSN Silent p.G171G 0.35 TCGA-AK-3444-01 6 52943655 52943655 T C FBXO9 Silent p.T132T 0.31 TCGA-AK-3444-01 6 75827250 75827250 A T COL12A1 Missense_Mutation p.F2456Y 0.21 probably_damaging(0.996) TCGA-AK-3444-01 7 137237186 137237186 C A DGKI Silent p.R692R 0.06 TCGA-AK-3444-01 7 137791988 137791988 C T AKR1D1 Intron 0.22 TCGA-AK-3444-01 7 150171609 150171609 G C GIMAP8 Missense_Mutation p.A398P 0.25 tolerated(0.05) possibly_damaging(0.659) TCGA-AK-3444-01 7 39247033 39247033 G A POU6F2 Missense_Mutation p.V109M 0.05 tolerated(0.36) probably_damaging(0.968) TCGA-AK-3444-01 7 4830219 4830219 C T AP5Z1 Silent p.S645S 0.16 TCGA-AK-3444-01 7 50467916 50467916 C T IKZF1 Missense_Mutation p.S342L 0.24 deleterious(0.01) benign(0.017) TCGA-AK-3444-01 7 6029494 6029494 C G PMS2 Missense_Mutation p.G361R 0.24 tolerated(0.19) benign(0.077) TCGA-AK-3444-01 7 90894804 90894804 C G FZD1 Missense_Mutation p.N203K 0.04 tolerated(0.39) benign(0.173) TCGA-AK-3444-01 7 92098577 92098577 G T ERVW-1 Missense_Mutation p.N373K 0.23 deleterious(0.02) benign(0.26) TCGA-AK-3444-01 7 99801730 99801730 G A STAG3 Silent p.L929L 0.21 TCGA-AK-3444-01 7 99801731 99801731 C T STAG3 Silent p.L930L 0.21 TCGA-AK-3444-01 8 22414254 22414254 G C SORBS3 Missense_Mutation p.G83R 0.09 deleterious(0.01) possibly_damaging(0.774) TCGA-AK-3444-01 8 81412314 81412314 G A ZBTB10 Missense_Mutation p.G520S 0.20 tolerated(0.09) benign(0.017) TCGA-AK-3444-01 9 101765861 101765861 G A COL15A1 Missense_Mutation p.V398I 0.34 tolerated_low_confidence(0.39) benign(0.004) TCGA-AK-3444-01 9 104357268 104357268 G T PPP3R2 5'UTR 0.34 TCGA-AK-3444-01 9 116356377 116356377 G C RGS3 Intron 0.36 TCGA-AK-3444-01 9 136578237 136578237 G A SARDH Missense_Mutation p.T387M 0.22 deleterious(0) probably_damaging(1) TCGA-AK-3444-01 9 137007540 137007540 G A WDR5 Missense_Mutation p.G147E 0.30 deleterious(0) probably_damaging(1) TCGA-AK-3444-01 9 34371724 34371724 C T KIAA1161 Silent p.V372V 0.36 TCGA-AK-3444-01 9 37708465 37708465 A G FRMPD1 Missense_Mutation p.D110G 0.29 tolerated(0.05) possibly_damaging(0.517) TCGA-AK-3444-01 X 100098824 100098824 T G NOX1 3'UTR 0.32 TCGA-AK-3444-01 X 148586585 148586585 G C IDS Missense_Mutation p.T28R 0.30 tolerated(0.52) benign(0.003) TCGA-AK-3444-01 X 17742451 17742451 T C NHS Missense_Mutation p.C360R 0.07 tolerated(0.51) possibly_damaging(0.64) TCGA-AK-3444-01 X 18961909 18961920 AATTGCCTCAAG - PHKA2 In_Frame_Del p.L209_I212del 0.39 TCGA-AK-3444-01 X 30253983 30253983 G A MAGEB3 Intron 0.25 TCGA-AK-3444-01 X 65253460 65253460 G A VSIG4 Missense_Mutation p.H90Y 0.34 tolerated(0.06) benign(0.002) TCGA-AK-3451-01 10 116082996 116082996 T G AFAP1L2 Missense_Mutation p.I114L 0.24 tolerated(1) benign(0.001) TCGA-AK-3451-01 10 128973705 128973705 T C FAM196A Missense_Mutation p.S319G 0.12 tolerated(0.19) benign(0.009) TCGA-AK-3451-01 10 50819157 50819157 T G SLC18A3 Missense_Mutation p.I124S 0.26 deleterious(0) probably_damaging(0.942) TCGA-AK-3451-01 10 91469205 91469205 T G KIF20B Missense_Mutation p.F113C 0.25 deleterious(0) probably_damaging(0.998) TCGA-AK-3451-01 11 107375782 107375782 T - ALKBH8 Frame_Shift_Del p.S533Vfs*82 0.20 TCGA-AK-3451-01 11 1097746 1097746 C T MUC2 Missense_Mutation p.S2280F 0.26 unknown(0) TCGA-AK-3451-01 11 119031335 119031335 C A ABCG4 Missense_Mutation p.L562M 0.19 tolerated(0.09) possibly_damaging(0.595) TCGA-AK-3451-01 11 124413242 124413242 G T OR8B12 Missense_Mutation p.F103L 0.18 deleterious_low_confidence(0.03) benign(0.071) TCGA-AK-3451-01 11 2329985 2329985 T A TSPAN32 Missense_Mutation p.L100Q 0.23 deleterious(0) probably_damaging(0.978) TCGA-AK-3451-01 11 57440598 57440598 C A ZDHHC5 Missense_Mutation p.S12R 0.24 deleterious(0) possibly_damaging(0.629) TCGA-AK-3451-01 11 60658678 60658678 G A PRPF19 Missense_Mutation p.S492L 0.30 tolerated(0.21) possibly_damaging(0.817) TCGA-AK-3451-01 11 94730799 94730799 A G KDM4D Missense_Mutation p.Q88R 0.28 deleterious(0) probably_damaging(1) TCGA-AK-3451-01 12 10217396 10217396 G C CLEC9A Missense_Mutation p.Q179H 0.23 tolerated(0.16) benign(0.132) TCGA-AK-3451-01 12 131311785 131311785 C G STX2 Missense_Mutation p.V20L 0.27 tolerated(0.15) benign(0.007) TCGA-AK-3451-01 12 48737147 48737147 C T ZNF641 Missense_Mutation p.R309K 0.26 tolerated(0.49) probably_damaging(0.952) TCGA-AK-3451-01 12 54385596 54385596 C T RP11-834C11.12 Intron 0.36 TCGA-AK-3451-01 12 57921633 57921633 G T MBD6 Missense_Mutation p.D747Y 0.36 deleterious_low_confidence(0) unknown(0) TCGA-AK-3451-01 12 67700071 67700071 G A CAND1 Missense_Mutation p.A875T 0.24 deleterious(0) probably_damaging(0.922) TCGA-AK-3451-01 12 68052356 68052356 A C DYRK2 Missense_Mutation p.T557P 0.31 tolerated(0.06) benign(0.16) TCGA-AK-3451-01 13 42263606 42263606 G T VWA8 Missense_Mutation p.Q1339K 0.24 tolerated(0.15) benign(0.23) TCGA-AK-3451-01 14 23371499 23371499 C A RBM23 Missense_Mutation p.E341D 0.38 tolerated(0.06) benign(0.132) TCGA-AK-3451-01 15 68445966 68445966 C T PIAS1 Silent p.S289S 0.27 TCGA-AK-3451-01 15 91449080 91449080 A G MAN2A2 Missense_Mutation p.I181V 0.08 tolerated(0.18) benign(0.019) TCGA-AK-3451-01 16 2158399 2158399 C A PKD1 Missense_Mutation p.V2257L 0.45 probably_damaging(1) TCGA-AK-3451-01 16 2158400 2158400 C A PKD1 Silent p.L2256L 0.43 TCGA-AK-3451-01 16 75678248 75678248 G A KARS Silent p.L27L 0.32 TCGA-AK-3451-01 17 78058619 78058619 C T CCDC40 Silent p.D689D 0.15 TCGA-AK-3451-01 17 7805978 7805978 C A CHD3 Nonsense_Mutation p.Y1160* 0.26 TCGA-AK-3451-01 18 64211271 64211273 GGG - CDH19 In_Frame_Del p.P384del 0.29 TCGA-AK-3451-01 18 8113697 8113697 T A PTPRM Silent p.T690T 0.27 TCGA-AK-3451-01 19 1820040 1820040 T C REXO1 Missense_Mutation p.K848R 0.10 deleterious(0) probably_damaging(0.978) TCGA-AK-3451-01 19 39362295 39362295 T G RINL Missense_Mutation p.E148A 0.27 deleterious(0.01) benign(0.031) TCGA-AK-3451-01 19 44610924 44610924 A G ZNF224 Missense_Mutation p.Y204C 0.18 tolerated(0.09) benign(0.01) TCGA-AK-3451-01 19 44792129 44792129 A T ZNF235 Missense_Mutation p.Y487N 0.30 deleterious(0) probably_damaging(0.999) TCGA-AK-3451-01 19 54223429 54223429 G T MIR520D RNA 0.21 TCGA-AK-3451-01 1 196250087 196250087 C A KCNT2 Missense_Mutation p.R938I 0.25 deleterious(0.03) probably_damaging(0.949) TCGA-AK-3451-01 1 200960791 200960791 G T KIF21B Silent p.T816T 0.35 TCGA-AK-3451-01 1 205884354 205884354 A G SLC26A9 Intron 0.10 TCGA-AK-3451-01 1 220269443 220269443 C A IARS2 Intron 0.21 TCGA-AK-3451-01 1 229773365 229773365 G A URB2 Missense_Mutation p.G1002E 0.24 tolerated(0.85) benign(0.026) TCGA-AK-3451-01 1 25687310 25687310 C T TMEM50A 3'UTR 0.25 TCGA-AK-3451-01 1 35578967 35578967 G A ZMYM1 Silent p.K512K 0.22 TCGA-AK-3451-01 1 43616487 43616487 A C FAM183A Silent p.A63A 0.20 TCGA-AK-3451-01 1 47402390 47402390 A C CYP4A11 Nonsense_Mutation p.Y152* 0.16 TCGA-AK-3451-01 1 53516318 53516318 T A SCP2 Missense_Mutation p.M529K 0.29 deleterious(0) probably_damaging(0.986) TCGA-AK-3451-01 1 70694139 70694139 T G SRSF11 Missense_Mutation p.F80V 0.26 deleterious(0) unknown(0) TCGA-AK-3451-01 1 90400298 90400298 T - LRRC8D Frame_Shift_Del p.L558Cfs*10 0.28 TCGA-AK-3451-01 1 93089777 93089777 C T EVI5 Missense_Mutation p.E579K 0.25 deleterious(0.02) benign(0.169) TCGA-AK-3451-01 20 20493446 20493446 A C RALGAPA2 Missense_Mutation p.L1523V 0.28 deleterious(0.01) possibly_damaging(0.685) TCGA-AK-3451-01 20 62871861 62871861 C A MYT1 3'UTR 0.21 TCGA-AK-3451-01 21 28213405 28213407 CAT - ADAMTS1 In_Frame_Del p.M430del 0.26 TCGA-AK-3451-01 22 29668371 29668371 A G EWSR1 Missense_Mutation p.Y18C 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AK-3451-01 2 113820280 113820280 G A IL36RN 3'UTR 0.29 TCGA-AK-3451-01 2 158114785 158114785 G A GALNT5 Missense_Mutation p.G64E 0.26 tolerated(0.61) benign(0) TCGA-AK-3451-01 2 167760143 167760143 G T XIRP2 Missense_Mutation p.V51L 0.29 benign(0.002) TCGA-AK-3451-01 2 169745777 169745777 T G SPC25 Missense_Mutation p.E53A 0.21 deleterious(0) probably_damaging(0.989) TCGA-AK-3451-01 2 173352130 173352130 G A ITGA6 Silent p.T703T 0.26 TCGA-AK-3451-01 2 179582267 179582267 G A TTN Missense_Mutation p.A8445V 0.25 TCGA-AK-3451-01 2 201533350 201533350 T - AOX1 Frame_Shift_Del p.F1208Lfs*10 0.26 TCGA-AK-3451-01 2 219900064 219900064 T G CCDC108 Intron 0.27 TCGA-AK-3451-01 2 228883640 228883640 T C SPHKAP Missense_Mutation p.N644D 0.26 tolerated(0.08) benign(0.347) TCGA-AK-3451-01 2 234591037 234591037 G A UGT1A7 Missense_Mutation p.A152T 0.23 deleterious(0.03) benign(0.003) TCGA-AK-3451-01 2 234591142 234591142 C G UGT1A7 Missense_Mutation p.L187V 0.25 tolerated(0.37) benign(0.145) TCGA-AK-3451-01 2 74902021 74902021 G T SEMA4F Silent p.G336G 0.27 TCGA-AK-3451-01 2 99725301 99725301 C T TSGA10 Missense_Mutation p.E69K 0.27 deleterious(0.04) benign(0.031) TCGA-AK-3451-01 3 109031461 109031461 C - DPPA2 Frame_Shift_Del p.E38Nfs*72 0.24 TCGA-AK-3451-01 3 113371853 113371853 T C KIAA2018 3'UTR 0.21 TCGA-AK-3451-01 3 13612942 13612946 GGCAA - FBLN2 Frame_Shift_Del p.K364Cfs*30 0.44 TCGA-AK-3451-01 3 154856020 154856020 G T MME Missense_Mutation p.A284S 0.31 deleterious(0) probably_damaging(1) TCGA-AK-3451-01 3 154856021 154856021 C G MME Missense_Mutation p.A284G 0.30 deleterious(0) probably_damaging(0.999) TCGA-AK-3451-01 3 157815993 157815993 G - SHOX2 Frame_Shift_Del p.Y298Tfs*2 0.24 TCGA-AK-3451-01 3 16368331 16368331 T C RFTN1 Missense_Mutation p.Y400C 0.39 deleterious(0) probably_damaging(0.999) TCGA-AK-3451-01 3 27332981 27332982 - AA NEK10 Frame_Shift_Ins p.L490Ffs*3 0.34 TCGA-AK-3451-01 3 52442521 52442521 T C BAP1 Missense_Mutation p.D75G 0.28 tolerated(0.1) possibly_damaging(0.497) TCGA-AK-3451-01 3 62258667 62258667 C G PTPRG Missense_Mutation p.L1077V 0.33 deleterious(0) probably_damaging(0.948) TCGA-AK-3451-01 4 148539066 148539066 A C TMEM184C 5'UTR 0.28 TCGA-AK-3451-01 4 152043042 152043042 G T SH3D19 3'UTR 0.30 TCGA-AK-3451-01 4 15513048 15513048 T G CC2D2A Splice_Site p.X239_splice 0.28 TCGA-AK-3451-01 4 15607173 15607173 G T FBXL5 3'UTR 0.41 TCGA-AK-3451-01 5 11018139 11018139 G T CTNND2 Missense_Mutation p.Q1011K 0.29 deleterious(0.01) possibly_damaging(0.473) TCGA-AK-3451-01 5 118691785 118691785 T A TNFAIP8 5'UTR 0.12 TCGA-AK-3451-01 5 132270528 132270528 T C AFF4 Missense_Mutation p.I77V 0.41 tolerated(0.21) benign(0.206) TCGA-AK-3451-01 5 154287300 154287301 AA G GEMIN5 Frame_Shift_Del p.L749Rfs*5 0.11 TCGA-AK-3451-01 5 161524855 161524855 A G GABRG2 Missense_Mutation p.Y180C 0.19 deleterious(0) probably_damaging(0.999) TCGA-AK-3451-01 5 32242165 32242165 A G MTMR12 Missense_Mutation p.L390S 0.26 tolerated(0.09) benign(0.057) TCGA-AK-3451-01 6 15513151 15513152 - AAGCGTCGC JARID2 In_Frame_Ins p.K1048_R1050dup 0.14 TCGA-AK-3451-01 6 160468352 160468352 G A IGF2R Missense_Mutation p.G738D 0.34 deleterious(0.01) probably_damaging(1) TCGA-AK-3451-01 6 32006526 32006526 C A CYP21A2 Missense_Mutation p.T77N 0.19 tolerated(0.11) possibly_damaging(0.703) TCGA-AK-3451-01 7 116556165 116556165 A T CAPZA2 Missense_Mutation p.N237Y 0.28 tolerated(0.07) probably_damaging(0.979) TCGA-AK-3451-01 7 128358917 128358917 T C FAM71F1 Missense_Mutation p.V156A 0.26 deleterious(0.01) possibly_damaging(0.734) TCGA-AK-3451-01 7 151896527 151896527 T - KMT2C Frame_Shift_Del p.D1371Ifs*3 0.23 TCGA-AK-3451-01 7 2954892 2954892 G C CARD11 Missense_Mutation p.L940V 0.19 tolerated(0.29) benign(0.001) TCGA-AK-3451-01 7 50611748 50611748 C G DDC Missense_Mutation p.E12D 0.28 tolerated(0.05) benign(0.011) TCGA-AK-3451-01 7 86826037 86826037 A T TMEM243 Missense_Mutation p.F91Y 0.27 deleterious(0.01) possibly_damaging(0.787) TCGA-AK-3451-01 8 110523095 110523096 GA T PKHD1L1 Frame_Shift_Del p.E3829* 0.14 TCGA-AK-3451-01 8 18079815 18079815 A T NAT1 Missense_Mutation p.T149S 0.28 deleterious(0.03) benign(0.091) TCGA-AK-3451-01 8 42828459 42828459 G A HOOK3 Missense_Mutation p.E384K 0.22 tolerated(0.06) possibly_damaging(0.508) TCGA-AK-3451-01 X 37984722 37984722 C A SYTL5 Missense_Mutation p.N693K 0.53 deleterious(0) probably_damaging(1) TCGA-AK-3451-01 X 40568603 40568603 T G MED14 Missense_Mutation p.N428H 0.60 tolerated(0.06) possibly_damaging(0.553) TCGA-AK-3453-01 11 102713276 102713276 C T MMP3 Missense_Mutation p.A129T 0.24 tolerated(0.1) benign(0.411) TCGA-AK-3453-01 11 67925230 67925230 T C SUV420H1 Missense_Mutation p.I861M 0.03 deleterious(0) probably_damaging(0.999) TCGA-AK-3453-01 12 19282785 19282786 - A PLEKHA5 Nonsense_Mutation p.Y18* 0.19 TCGA-AK-3453-01 15 52074920 52074920 C T TMOD2 Silent p.N209N 0.03 TCGA-AK-3453-01 15 81282120 81282120 T C MESDC2 Missense_Mutation p.R5G 0.38 tolerated_low_confidence(0.62) benign(0) TCGA-AK-3453-01 16 14345845 14345845 C T MKL2 Missense_Mutation p.P794S 0.21 tolerated(0.13) benign(0.043) TCGA-AK-3453-01 17 10543475 10543475 G A MYH3 Silent p.L840L 0.04 TCGA-AK-3453-01 18 14104893 14104893 C T ZNF519 3'UTR 0.04 TCGA-AK-3453-01 18 21898607 21898607 G C OSBPL1A Silent p.V230V 0.06 TCGA-AK-3453-01 19 11617057 11617057 G A ECSIT Missense_Mutation p.P413L 0.32 tolerated(0.06) benign(0.002) TCGA-AK-3453-01 19 15586419 15586419 C T PGLYRP2 Silent p.Q354Q 0.14 TCGA-AK-3453-01 19 38853184 38853184 G C CATSPERG Missense_Mutation p.G776R 0.05 tolerated(0.12) benign(0.055) TCGA-AK-3453-01 19 50473431 50473431 T G SIGLEC16 RNA 0.18 TCGA-AK-3453-01 19 6534882 6534882 C T TNFSF9 Silent p.S190S 0.15 TCGA-AK-3453-01 1 152191466 152191466 C T HRNR Missense_Mutation p.R880H 0.05 unknown(0) TCGA-AK-3453-01 1 224592221 224592221 C T WDR26 Missense_Mutation p.V404I 0.04 deleterious(0.03) benign(0.397) TCGA-AK-3453-01 1 31836952 31836952 G A ZCCHC17 Missense_Mutation p.G213D 0.05 tolerated_low_confidence(0.08) benign(0.029) TCGA-AK-3453-01 2 100199272 100199272 G A AFF3 Silent p.G952G 0.06 TCGA-AK-3453-01 2 208866460 208866460 T A PLEKHM3 5'UTR 0.10 TCGA-AK-3453-01 2 223066658 223066658 C T PAX3 Intron 0.18 TCGA-AK-3453-01 2 69034497 69034497 T C ARHGAP25 Missense_Mutation p.F187L 0.05 deleterious(0) possibly_damaging(0.831) TCGA-AK-3453-01 3 125271258 125271258 C A OSBPL11 Missense_Mutation p.S474I 0.07 tolerated(0.05) benign(0.305) TCGA-AK-3453-01 3 99514149 99514149 T G COL8A1 Silent p.G468G 0.15 TCGA-AK-3453-01 5 140215597 140215597 G A PCDHA7 Silent p.P543P 0.03 TCGA-AK-3453-01 5 90667241 90667243 ATC - ARRDC3 In_Frame_Del p.D407del 0.15 TCGA-AK-3453-01 6 36982762 36982762 T G FGD2 Missense_Mutation p.V326G 0.28 deleterious(0) probably_damaging(0.937) TCGA-AK-3453-01 6 42946220 42946220 C A PEX6 Silent p.V223V 0.41 TCGA-AK-3453-01 6 84569562 84569562 G - CYB5R4 Frame_Shift_Del p.R23Vfs*6 0.50 TCGA-AK-3453-01 8 86163153 86163153 A T CA13 Silent p.T74T 0.36 TCGA-AK-3453-01 X 101095848 101095848 C A NXF5 Missense_Mutation p.C167F 0.29 tolerated(0.07) benign(0.197) TCGA-AK-3455-01 10 75612974 75612974 C G CAMK2G Missense_Mutation p.G84A 0.27 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-AK-3455-01 11 111782457 111782457 G T CRYAB 5'UTR 0.39 TCGA-AK-3455-01 11 2606466 2606466 C T KCNQ1 Silent p.L353L 0.18 TCGA-AK-3455-01 11 31327871 31327871 G T DCDC1 Missense_Mutation p.H167N 0.27 tolerated(0.3) benign(0.012) TCGA-AK-3455-01 11 46726914 46726914 T - ZNF408 Frame_Shift_Del p.V555Gfs*146 0.25 TCGA-AK-3455-01 11 46916747 46916747 G A LRP4 Missense_Mutation p.R427W 0.24 deleterious(0) probably_damaging(0.995) TCGA-AK-3455-01 11 63487838 63487838 G A RTN3 Missense_Mutation p.E622K 0.27 tolerated(0.09) benign(0.063) TCGA-AK-3455-01 12 58126199 58126199 G A AGAP2 Missense_Mutation p.P594L 0.23 deleterious(0.01) probably_damaging(0.928) TCGA-AK-3455-01 13 86368512 86368512 C T SLITRK6 Missense_Mutation p.G711E 0.26 tolerated(0.67) benign(0.002) TCGA-AK-3455-01 15 27193284 27193284 C A GABRA5 Silent p.I431I 0.31 TCGA-AK-3455-01 15 42479524 42479524 G A VPS39 Missense_Mutation p.A160V 0.24 tolerated(0.16) benign(0.212) TCGA-AK-3455-01 15 43571460 43571460 A C TGM7 Missense_Mutation p.L565R 0.19 deleterious(0.01) possibly_damaging(0.703) TCGA-AK-3455-01 15 75655087 75655087 A G MAN2C1 Missense_Mutation p.W265R 0.21 deleterious(0.02) probably_damaging(1) TCGA-AK-3455-01 16 31094339 31094339 C G ZNF646 Missense_Mutation p.P1809A 0.23 tolerated_low_confidence(0.64) benign(0.03) TCGA-AK-3455-01 17 56638955 56638955 A C TEX14 Missense_Mutation p.D1407E 0.25 deleterious(0) probably_damaging(0.999) TCGA-AK-3455-01 17 60039068 60039073 ATTTTA - MED13 In_Frame_Del p.L1711_K1712del 0.28 TCGA-AK-3455-01 17 68171679 68171679 G A KCNJ2 Missense_Mutation p.V167M 0.29 tolerated(0.07) possibly_damaging(0.639) TCGA-AK-3455-01 17 8021249 8021249 G T ALOXE3 Missense_Mutation p.D152E 0.36 deleterious(0) probably_damaging(0.978) TCGA-AK-3455-01 17 8701942 8701942 C T MFSD6L Missense_Mutation p.R166H 0.25 tolerated(0.13) benign(0.01) TCGA-AK-3455-01 18 24436385 24436385 T A AQP4 Silent p.P254P 0.24 TCGA-AK-3455-01 19 39408623 39408623 G A SARS2 Missense_Mutation p.R332W 0.13 deleterious(0) probably_damaging(1) TCGA-AK-3455-01 19 56473595 56473595 A G NLRP8 Silent p.Q735Q 0.25 TCGA-AK-3455-01 19 57764639 57764639 C G ZNF805 Missense_Mutation p.P151R 0.40 tolerated(0.07) benign(0.043) TCGA-AK-3455-01 19 9064631 9064631 G A MUC16 Silent p.P7605P 0.28 TCGA-AK-3455-01 1 116243990 116243991 - CA CASQ2 Frame_Shift_Ins p.L358Cfs*14 0.27 TCGA-AK-3455-01 1 151209067 151209068 CT - PIP5K1A Frame_Shift_Del p.L326Dfs*5 0.24 TCGA-AK-3455-01 1 159888948 159888948 T A TAGLN2 Intron 0.20 TCGA-AK-3455-01 1 213302912 213302912 T C RPS6KC1 Missense_Mutation p.V172A 0.22 tolerated(0.77) benign(0.002) TCGA-AK-3455-01 1 242428747 242428747 G T PLD5 Missense_Mutation p.Q167K 0.20 tolerated(0.12) benign(0.01) TCGA-AK-3455-01 1 74670342 74670342 G A FPGT Missense_Mutation p.G204E 0.28 deleterious(0) probably_damaging(1) TCGA-AK-3455-01 20 35563478 35563478 A - SAMHD1 Frame_Shift_Del p.Y155Mfs*15 0.21 TCGA-AK-3455-01 20 61444100 61444100 G T OGFR Missense_Mutation p.S378I 0.30 deleterious(0.01) probably_damaging(0.961) TCGA-AK-3455-01 22 24175874 24175874 C T SMARCB1 Nonsense_Mutation p.Q368* 0.25 TCGA-AK-3455-01 2 173435508 173435508 A G PDK1 Missense_Mutation p.I301V 0.33 tolerated(0.41) benign(0.003) TCGA-AK-3455-01 2 17698328 17698328 A G RAD51AP2 Missense_Mutation p.I452T 0.20 tolerated(0.07) benign(0.001) TCGA-AK-3455-01 2 201304031 201304031 A G SPATS2L Missense_Mutation p.D211G 0.24 deleterious(0.04) possibly_damaging(0.901) TCGA-AK-3455-01 2 225637922 225637922 C T DOCK10 Silent p.V2052V 0.35 TCGA-AK-3455-01 2 241989270 241989270 A G SNED1 Missense_Mutation p.N552S 0.29 deleterious(0) probably_damaging(0.999) TCGA-AK-3455-01 2 8871251 8871251 T C KIDINS220 Missense_Mutation p.I1639V 0.30 tolerated_low_confidence(0.29) benign(0) TCGA-AK-3455-01 3 101570960 101570960 G C NFKBIZ Missense_Mutation p.Q107H 0.21 tolerated_low_confidence(0.31) benign(0.007) TCGA-AK-3455-01 3 10188204 10188204 T - VHL Frame_Shift_Del p.W117Gfs*42 0.33 TCGA-AK-3455-01 3 108117669 108117669 C G MYH15 Missense_Mutation p.D1670H 0.30 deleterious(0) probably_damaging(0.926) TCGA-AK-3455-01 3 122447427 122447427 A C PARP14 Missense_Mutation p.I1797L 0.31 deleterious(0) probably_damaging(0.999) TCGA-AK-3455-01 3 15602349 15602349 A G HACL1 3'UTR 0.34 TCGA-AK-3455-01 3 164767593 164767593 G A SI Missense_Mutation p.P528L 0.16 deleterious(0) probably_damaging(0.996) TCGA-AK-3455-01 3 176767807 176767807 T C TBL1XR1 Missense_Mutation p.D227G 0.29 deleterious(0.01) possibly_damaging(0.78) TCGA-AK-3455-01 3 47143014 47143014 A G SETD2 Missense_Mutation p.F1650S 0.40 deleterious(0) probably_damaging(0.998) TCGA-AK-3455-01 4 114302688 114302688 G A ANK2 3'UTR 0.20 TCGA-AK-3455-01 4 129782923 129782923 T G JADE1 Missense_Mutation p.M349R 0.06 deleterious(0) probably_damaging(0.998) TCGA-AK-3455-01 5 110407687 110407687 C T TSLP Silent p.N33N 0.31 TCGA-AK-3455-01 5 142526819 142526819 A T ARHGAP26 Missense_Mutation p.N621Y 0.23 deleterious(0.04) benign(0.012) TCGA-AK-3455-01 5 19747190 19747190 A C CDH18 Silent p.A128A 0.26 TCGA-AK-3455-01 5 78350168 78350168 C G DMGDH Missense_Mutation p.V127L 0.25 tolerated(0.06) possibly_damaging(0.576) TCGA-AK-3455-01 6 132910010 132910010 C T TAAR5 Silent p.T272T 0.27 TCGA-AK-3455-01 6 153323724 153323724 G A MTRF1L Silent p.L33L 0.54 TCGA-AK-3455-01 6 157528622 157528622 T G ARID1B Missense_Mutation p.V2116G 0.04 probably_damaging(0.916) TCGA-AK-3455-01 6 33693343 33693343 G C IP6K3 Missense_Mutation p.L214V 0.22 deleterious(0) probably_damaging(0.978) TCGA-AK-3455-01 6 34826414 34826414 C T UHRF1BP1 Nonsense_Mutation p.Q761* 0.09 TCGA-AK-3455-01 7 101844801 101844802 - C CUX1 Frame_Shift_Ins p.K755Qfs*29 0.29 TCGA-AK-3455-01 7 101891738 101891738 A G CUX1 Missense_Mutation p.S1323G 0.22 tolerated(0.37) unknown(0) TCGA-AK-3455-01 7 111509659 111509659 G A DOCK4 Missense_Mutation p.R694W 0.13 deleterious(0.01) possibly_damaging(0.656) TCGA-AK-3455-01 7 120765873 120765873 G T CPED1 Splice_Site p.X354_splice 0.22 TCGA-AK-3455-01 7 76891575 76891575 G T CCDC146 Missense_Mutation p.W375L 0.29 tolerated(0.65) benign(0) TCGA-AK-3455-01 7 88963296 88963296 G A ZNF804B Missense_Mutation p.V334I 0.28 tolerated(0.24) benign(0.164) TCGA-AK-3455-01 8 106801068 106801068 T G ZFPM2 Missense_Mutation p.Y219D 0.28 deleterious(0) probably_damaging(0.998) TCGA-AK-3455-01 8 77616514 77616514 T G ZFHX4 Missense_Mutation p.F64C 0.30 possibly_damaging(0.878) TCGA-AK-3455-01 9 115806234 115806234 C G ZFP37 Missense_Mutation p.G222R 0.21 tolerated(0.48) benign(0.081) TCGA-AK-3455-01 9 137805435 137805435 C G FCN1 Missense_Mutation p.C111S 0.23 tolerated(0.07) benign(0.019) TCGA-AK-3455-01 X 111914413 111914413 C T LHFPL1 Missense_Mutation p.R69H 0.07 deleterious(0.04) possibly_damaging(0.771) TCGA-AK-3455-01 X 35820494 35820494 C T MAGEB16 Missense_Mutation p.P61S 0.24 tolerated(0.24) benign(0.003) TCGA-AK-3456-01 10 100022771 100022771 C T LOXL4 Silent p.A2A 0.30 TCGA-AK-3456-01 10 61831542 61831542 C G ANK3 Missense_Mutation p.G3033R 0.39 benign(0.119) TCGA-AK-3456-01 10 76797800 76797800 G A DUPD1 Missense_Mutation p.R153W 0.11 deleterious(0) probably_damaging(1) TCGA-AK-3456-01 10 99145673 99145673 C T RRP12 Silent p.E365E 0.41 TCGA-AK-3456-01 11 117263760 117263760 G A CEP164 Missense_Mutation p.G845E 0.37 tolerated(0.12) benign(0.004) TCGA-AK-3456-01 11 6964378 6964378 C G ZNF215 Missense_Mutation p.S183C 0.35 deleterious(0) benign(0.005) TCGA-AK-3456-01 12 130184666 130184666 C T TMEM132D Silent p.P219P 0.53 TCGA-AK-3456-01 12 49954117 49954117 A T MCRS1 Missense_Mutation p.F294Y 0.37 deleterious(0) possibly_damaging(0.857) TCGA-AK-3456-01 13 39262990 39262990 T C FREM2 Silent p.A503A 0.33 TCGA-AK-3456-01 13 39262991 39262991 C T FREM2 Missense_Mutation p.P504S 0.35 tolerated(0.52) benign(0.004) TCGA-AK-3456-01 14 24886608 24886608 G A NYNRIN Missense_Mutation p.A1885T 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.848) TCGA-AK-3456-01 14 32902689 32902689 T A AKAP6 5'UTR 0.36 TCGA-AK-3456-01 14 52741643 52741643 C T PTGDR Silent p.S347S 0.41 TCGA-AK-3456-01 14 74763075 74763075 G C ABCD4 Missense_Mutation p.P168R 0.34 deleterious(0) probably_damaging(1) TCGA-AK-3456-01 14 80669169 80669169 G A DIO2 Missense_Mutation p.R265C 0.17 deleterious(0) probably_damaging(1) TCGA-AK-3456-01 14 91942217 91942217 G C SMEK1 Missense_Mutation p.Q402E 0.35 tolerated(0.53) possibly_damaging(0.83) TCGA-AK-3456-01 15 45965852 45965852 T G SQRDL Missense_Mutation p.N169K 0.40 deleterious(0.01) probably_damaging(0.967) TCGA-AK-3456-01 16 57088695 57088695 C G NLRC5 Missense_Mutation p.P1180R 0.27 deleterious(0) possibly_damaging(0.786) TCGA-AK-3456-01 16 67690372 67690372 C T RLTPR Missense_Mutation p.A1287V 0.23 tolerated_low_confidence(0.23) benign(0.101) TCGA-AK-3456-01 17 40714595 40714595 A G COASY Intron 0.14 TCGA-AK-3456-01 17 46030230 46030230 C T PRR15L 3'UTR 0.51 TCGA-AK-3456-01 19 12187458 12187458 A T ZNF844 Missense_Mutation p.N508I 0.34 deleterious(0) possibly_damaging(0.902) TCGA-AK-3456-01 19 41243662 41243662 C T ITPKC Silent p.F612F 0.29 TCGA-AK-3456-01 19 49404186 49404186 C G NUCB1 Missense_Mutation p.P45A 0.36 tolerated(0.28) benign(0.184) TCGA-AK-3456-01 1 1268924 1268924 T G TAS1R3 Missense_Mutation p.S547A 0.34 tolerated(0.23) possibly_damaging(0.677) TCGA-AK-3456-01 1 148346820 148346820 G A NBPF20 Intron 0.10 TCGA-AK-3456-01 1 150778608 150778608 A T CTSK Nonsense_Mutation p.Y71* 0.35 TCGA-AK-3456-01 21 46047664 46047675 CTGCAAACCCAT - KRTAP10-9 In_Frame_Del p.K194_C197del 0.32 TCGA-AK-3456-01 21 47588323 47588323 G C SPATC1L Missense_Mutation p.T148S 0.32 tolerated(0.31) benign(0.002) TCGA-AK-3456-01 2 165561492 165561492 G A COBLL1 Missense_Mutation p.H374Y 0.31 deleterious(0.03) benign(0.284) TCGA-AK-3456-01 2 165561493 165561493 C A COBLL1 Silent p.P373P 0.31 TCGA-AK-3456-01 2 207011714 207011714 T G NDUFS1 Missense_Mutation p.E231A 0.33 deleterious(0) probably_damaging(0.991) TCGA-AK-3456-01 3 38888542 38888542 G T SCN11A Silent p.P1673P 0.21 TCGA-AK-3456-01 4 103947531 103947531 A T SLC9B2 Missense_Mutation p.V537D 0.34 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-AK-3456-01 4 42509034 42509034 G A ATP8A1 Silent p.I695I 0.35 TCGA-AK-3456-01 4 56448342 56448342 T C PDCL2 Silent p.K23K 0.35 TCGA-AK-3456-01 5 40843666 40843666 T G CARD6 Silent p.V232V 0.38 TCGA-AK-3456-01 6 12123871 12123871 G C HIVEP1 Missense_Mutation p.K1281N 0.41 deleterious(0) probably_damaging(1) TCGA-AK-3456-01 6 44197391 44197391 C T SLC29A1 Silent p.D59D 0.39 TCGA-AK-3456-01 6 44274036 44274036 C A AARS2 Silent p.G427G 0.27 TCGA-AK-3456-01 7 82579567 82579567 T C PCLO Missense_Mutation p.Q3446R 0.30 unknown(0) TCGA-AK-3456-01 7 98256632 98256632 C T NPTX2 Silent p.G348G 0.26 TCGA-AK-3456-01 8 8185255 8185256 - AA SGK223 Frame_Shift_Ins p.E1013Lfs*10 0.23 TCGA-AK-3456-01 9 117026664 117026664 G T COL27A1 Silent p.G1075G 0.23 TCGA-AK-3456-01 X 13055631 13055631 T A FAM9C 3'UTR 0.74 TCGA-AK-3458-01 10 49420118 49420118 T A FRMPD2 Missense_Mutation p.D497V 0.35 deleterious(0) probably_damaging(0.991) TCGA-AK-3458-01 11 111368759 111368759 A G BTG4 Missense_Mutation p.M92T 0.29 deleterious(0) possibly_damaging(0.704) TCGA-AK-3458-01 11 113701632 113701632 C A USP28 Silent p.V289V 0.24 TCGA-AK-3458-01 11 121030869 121030870 - AT TECTA Frame_Shift_Ins p.F1573Yfs*3 0.31 TCGA-AK-3458-01 11 67203476 67203476 G T PTPRCAP Missense_Mutation p.H117N 0.13 tolerated(0.3) benign(0.002) TCGA-AK-3458-01 12 10124190 10124190 T A CLEC12A Missense_Mutation p.S9T 0.29 tolerated_low_confidence(0.06) benign(0.071) TCGA-AK-3458-01 12 108589946 108589946 C A WSCD2 Silent p.R113R 0.12 TCGA-AK-3458-01 12 94673352 94673352 A C PLXNC1 Missense_Mutation p.K1234N 0.26 deleterious(0) probably_damaging(1) TCGA-AK-3458-01 14 105995239 105995239 C A TMEM121 Missense_Mutation p.A23D 0.10 deleterious(0.01) probably_damaging(0.918) TCGA-AK-3458-01 14 23421803 23421806 GTGA - HAUS4 Frame_Shift_Del p.Q49Mfs*7 0.47 TCGA-AK-3458-01 14 36218028 36218028 T A RALGAPA1 Missense_Mutation p.R338S 0.35 tolerated(0.65) probably_damaging(0.92) TCGA-AK-3458-01 14 36218029 36218029 C T RALGAPA1 Missense_Mutation p.R338K 0.36 tolerated(0.82) possibly_damaging(0.882) TCGA-AK-3458-01 14 78365584 78365584 C G ADCK1 Missense_Mutation p.H242D 0.34 tolerated(0.19) benign(0.005) TCGA-AK-3458-01 14 96129842 96129842 T C TCL6 RNA 0.38 TCGA-AK-3458-01 15 28515959 28515959 G A HERC2 Missense_Mutation p.P380L 0.23 possibly_damaging(0.84) TCGA-AK-3458-01 16 67516500 67516500 C T AGRP 3'UTR 0.44 TCGA-AK-3458-01 17 16664760 16664760 G A CCDC144A Missense_Mutation p.E1132K 0.18 deleterious(0.03) benign(0.278) TCGA-AK-3458-01 17 36358337 36358337 G T RP11-1407O15.2 Missense_Mutation p.P303H 0.11 TCGA-AK-3458-01 18 21043937 21043937 T C RIOK3 Silent p.A62A 0.26 TCGA-AK-3458-01 19 57329187 57329187 G A PEG3 Silent p.D263D 0.41 TCGA-AK-3458-01 1 202932810 202932810 G C CYB5R1 Missense_Mutation p.P202R 0.34 deleterious(0.01) possibly_damaging(0.902) TCGA-AK-3458-01 1 208215470 208215470 T C PLXNA2 Missense_Mutation p.K1420R 0.28 tolerated(0.23) benign(0.005) TCGA-AK-3458-01 1 226032308 226032308 A G EPHX1 Missense_Mutation p.T384A 0.31 tolerated(1) benign(0.002) TCGA-AK-3458-01 1 236740185 236740185 C A HEATR1 Missense_Mutation p.Q940H 0.29 tolerated(0.21) benign(0) TCGA-AK-3458-01 1 32682463 32682463 A T TMEM234 Silent p.S138S 0.33 TCGA-AK-3458-01 2 26647271 26647271 C A DRC1 Missense_Mutation p.H163Q 0.29 tolerated(1) benign(0.004) TCGA-AK-3458-01 3 10188203 10188205 CTT - VHL In_Frame_Del p.L116del 0.58 TCGA-AK-3458-01 3 46783933 46783933 C A PRSS45 Missense_Mutation p.K198N 0.41 tolerated(0.39) benign(0.052) TCGA-AK-3458-01 3 52620525 52620525 A - PBRM1 Frame_Shift_Del p.F1076Lfs*58 0.51 TCGA-AK-3458-01 4 109543328 109543328 G A RPL34 Missense_Mutation p.A45T 0.22 tolerated(0.06) benign(0.091) TCGA-AK-3458-01 5 149375454 149375454 T C TIGD6 Missense_Mutation p.D153G 0.24 deleterious(0.02) benign(0.078) TCGA-AK-3458-01 5 180374669 180374669 T C BTNL8 Intron 0.22 TCGA-AK-3458-01 5 180377117 180377117 G A BTNL8 Missense_Mutation p.R359Q 0.44 tolerated(0.38) benign(0.196) TCGA-AK-3458-01 5 95242241 95242241 C A ELL2 Missense_Mutation p.A243S 0.27 tolerated(1) benign(0.063) TCGA-AK-3458-01 7 135370372 135370372 C T SLC13A4 Silent p.P501P 0.31 TCGA-AK-3458-01 7 44146266 44146266 C T AEBP1 Silent p.P125P 0.06 TCGA-AK-3458-01 9 104449136 104449136 G A GRIN3A Missense_Mutation p.P349L 0.06 tolerated(0.49) benign(0.001) TCGA-AK-3458-01 9 117552995 117552995 T A TNFSF15 Missense_Mutation p.I165F 0.34 deleterious(0.01) possibly_damaging(0.596) TCGA-AK-3458-01 9 19116637 19116637 G A PLIN2 Missense_Mutation p.S308L 0.31 deleterious(0.01) probably_damaging(0.927) TCGA-AK-3458-01 9 33817901 33817901 C T UBE2R2 Missense_Mutation p.P49L 0.09 deleterious(0) possibly_damaging(0.749) TCGA-AK-3458-01 X 112048309 112048309 G C AMOT Missense_Mutation p.Q548E 0.68 unknown(0) TCGA-AK-3458-01 X 53244975 53244975 A G KDM5C Splice_Site p.X321_splice 0.54 TCGA-AK-3465-01 10 7751105 7751105 G A ITIH2 Missense_Mutation p.V105M 0.29 tolerated(0.19) benign(0.223) TCGA-AK-3465-01 11 57798663 57798663 T G OR6Q1 Missense_Mutation p.V80G 0.74 deleterious(0) benign(0.197) TCGA-AK-3465-01 11 65293511 65293511 C T SCYL1 Silent p.I124I 0.09 TCGA-AK-3465-01 12 50025308 50025308 C T PRPF40B Missense_Mutation p.A70V 0.15 tolerated(0.11) unknown(0) TCGA-AK-3465-01 14 74514756 74514760 TACTT - CCDC176 Frame_Shift_Del p.L259Ffs*8 0.45 TCGA-AK-3465-01 15 43544964 43544964 C T TGM5 Missense_Mutation p.M285I 0.43 deleterious(0) benign(0.345) TCGA-AK-3465-01 16 11001311 11001311 C T CIITA Silent p.P654P 0.46 TCGA-AK-3465-01 16 1129327 1129327 G A SSTR5 Silent p.P153P 0.48 TCGA-AK-3465-01 17 60526166 60526166 C T METTL2A 3'UTR 0.78 TCGA-AK-3465-01 19 18173055 18173055 C T IL12RB1 Missense_Mutation p.A551T 0.10 tolerated(0.16) benign(0.095) TCGA-AK-3465-01 19 38692610 38692610 C T SIPA1L3 Missense_Mutation p.P1698L 0.36 tolerated(0.4) benign(0.006) TCGA-AK-3465-01 19 39868378 39868378 C T SAMD4B Missense_Mutation p.P453L 0.35 tolerated(0.39) benign(0.002) TCGA-AK-3465-01 19 40376821 40376821 G C FCGBP Silent p.S3867S 0.78 TCGA-AK-3465-01 19 40376822 40376822 G T FCGBP Missense_Mutation p.S3867Y 0.78 possibly_damaging(0.86) TCGA-AK-3465-01 19 42492233 42492233 G A ATP1A3 Missense_Mutation p.T84M 0.42 deleterious(0) probably_damaging(0.999) TCGA-AK-3465-01 1 109740267 109740267 C T KIAA1324 Nonsense_Mutation p.R765* 0.21 TCGA-AK-3465-01 1 151801927 151801927 C A RORC Silent p.L16L 0.05 TCGA-AK-3465-01 1 22974251 22974251 C G C1QC Missense_Mutation p.S238C 0.20 deleterious(0) probably_damaging(0.999) TCGA-AK-3465-01 1 8399610 8399610 A G SLC45A1 Missense_Mutation p.Y611C 0.76 deleterious(0.01) probably_damaging(0.999) TCGA-AK-3465-01 20 2592911 2592911 C T TMC2 Silent p.N556N 0.45 TCGA-AK-3465-01 22 30189476 30189476 G T ASCC2 Missense_Mutation p.P598T 0.28 tolerated(0.1) benign(0.003) TCGA-AK-3465-01 22 37770867 37770867 G A ELFN2 Silent p.N236N 0.46 TCGA-AK-3465-01 2 27559290 27559290 A G GTF3C2 Missense_Mutation p.F377S 0.20 deleterious(0) probably_damaging(0.997) TCGA-AK-3465-01 3 138739488 138739488 G A PRR23B Missense_Mutation p.R6C 0.55 deleterious(0.04) unknown(0) TCGA-AK-3465-01 4 74270115 74270115 G A ALB Missense_Mutation p.R24Q 0.41 tolerated(0.06) benign(0.348) TCGA-AK-3465-01 5 131013435 131013435 C - FNIP1 Frame_Shift_Del p.A494Qfs*26 0.30 TCGA-AK-3465-01 5 140789895 140789895 T A PCDHGB6 Missense_Mutation p.L709Q 0.45 deleterious(0) possibly_damaging(0.624) TCGA-AK-3465-01 6 170033136 170033136 C A WDR27 Missense_Mutation p.R710S 0.78 deleterious(0) probably_damaging(0.956) TCGA-AK-3465-01 6 74440152 74440152 G A CD109 Missense_Mutation p.R121H 0.76 tolerated(0.13) benign(0.006) TCGA-AK-3465-01 7 131913110 131913110 C T PLXNA4 Missense_Mutation p.V575M 0.42 tolerated(0.06) probably_damaging(0.964) TCGA-AK-3465-01 7 4841532 4841532 G A RADIL Missense_Mutation p.P865L 0.40 tolerated(0.19) benign(0.001) TCGA-AK-3465-01 7 65579857 65579857 C G CRCP 5'UTR 0.42 TCGA-AK-3465-01 7 99800053 99800053 C T GATS 3'UTR 0.39 TCGA-AK-3465-01 8 145746499 145746502 TGAG - LRRC14 Frame_Shift_Del p.E374Vfs*15 0.65 TCGA-AK-3465-01 8 87486540 87486540 A G RMDN1 Silent p.N314N 0.39 TCGA-AK-3465-01 9 141069913 141069913 C T TUBBP5 RNA 0.38 TCGA-AK-3465-01 9 26842367 26842367 C G CAAP1 Missense_Mutation p.E340Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-AS-3777-01 10 18964302 18964302 G A ARL5B 3'UTR 0.29 TCGA-AS-3777-01 10 95351822 95351822 C T RBP4 3'UTR 0.20 TCGA-AS-3777-01 11 117392010 117392010 G A DSCAML1 Missense_Mutation p.R410C 0.37 deleterious(0) probably_damaging(0.99) TCGA-AS-3777-01 11 33050304 33050304 G T DEPDC7 Missense_Mutation p.D250Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-AS-3777-01 11 6008188 6008188 C A OR52L1 5'UTR 0.15 TCGA-AS-3777-01 11 62291443 62291443 G C AHNAK Missense_Mutation p.F3482L 0.20 benign(0.037) TCGA-AS-3777-01 12 52760942 52760942 C T KRT85 Missense_Mutation p.R83H 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-AS-3777-01 12 54797447 54797447 C T ITGA5 Missense_Mutation p.A580T 0.11 tolerated(0.44) probably_damaging(0.936) TCGA-AS-3777-01 13 109379873 109379873 C T MYO16 Missense_Mutation p.T128M 0.15 deleterious(0) probably_damaging(0.997) TCGA-AS-3777-01 13 39265811 39265811 C T FREM2 Silent p.L1444L 0.10 TCGA-AS-3777-01 14 65544756 65544756 T C MAX Splice_Site p.X58_splice 0.18 TCGA-AS-3777-01 17 10435042 10435042 G A MYH2 Missense_Mutation p.L869F 0.04 tolerated(0.07) possibly_damaging(0.656) TCGA-AS-3777-01 17 57125063 57125063 C A TRIM37 Missense_Mutation p.D550Y 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AS-3777-01 18 76753036 76753036 G A SALL3 Missense_Mutation p.G349R 0.20 tolerated(0.12) unknown(0) TCGA-AS-3777-01 19 58005550 58005550 G T ZNF419 3'UTR 0.31 TCGA-AS-3777-01 1 117303238 117303238 G T CD2 Missense_Mutation p.E199D 0.09 tolerated(0.56) benign(0.05) TCGA-AS-3777-01 1 150804293 150804293 C T ARNT Splice_Site p.X319_splice 0.07 TCGA-AS-3777-01 1 154067513 154067513 C T NUP210L Silent p.A695A 0.11 TCGA-AS-3777-01 1 158815659 158815659 T C MNDA Missense_Mutation p.S285P 0.04 deleterious(0.04) benign(0.442) TCGA-AS-3777-01 1 236212062 236212062 G A NID1 Silent p.S151S 0.11 TCGA-AS-3777-01 20 50226667 50226667 G C ATP9A Missense_Mutation p.P870R 0.09 deleterious(0) benign(0.066) TCGA-AS-3777-01 2 166903319 166903321 CTG - SCN1A In_Frame_Del p.Q446del 0.64 TCGA-AS-3777-01 2 37586796 37586796 C T QPCT Missense_Mutation p.P114L 0.60 deleterious(0) probably_damaging(1) TCGA-AS-3777-01 2 64323337 64323337 T C PELI1 Silent p.G204G 0.59 TCGA-AS-3777-01 3 128840237 128840237 C A RAB43 Silent p.T32T 0.31 TCGA-AS-3777-01 3 15726732 15726732 C A ANKRD28 Splice_Site p.X767_splice 0.13 TCGA-AS-3777-01 3 195778819 195778819 C A TFRC Missense_Mutation p.E759D 0.30 deleterious(0.05) benign(0.004) TCGA-AS-3777-01 4 36069579 36069579 G A ARAP2 Missense_Mutation p.R1689W 0.05 deleterious(0) probably_damaging(0.958) TCGA-AS-3777-01 5 127486938 127486938 C T SLC12A2 Missense_Mutation p.R705C 0.11 deleterious(0) probably_damaging(0.992) TCGA-AS-3777-01 6 32260989 32260989 T C C6orf10 Silent p.Q487Q 0.30 TCGA-AS-3777-01 X 35969399 35969399 G A CXorf22 Missense_Mutation p.A270T 0.23 deleterious(0.03) probably_damaging(0.946) TCGA-AS-3778-01 10 112356197 112356197 T G SMC3 Missense_Mutation p.Y669D 0.31 deleterious(0.02) possibly_damaging(0.459) TCGA-AS-3778-01 10 29762797 29762805 CGTCATCAG - SVIL In_Frame_Del p.L1831_T1833del 0.24 TCGA-AS-3778-01 10 99504492 99504499 GGTACTCA - ZFYVE27 Frame_Shift_Del p.W92Cfs*25 0.22 TCGA-AS-3778-01 11 17793714 17793714 T C KCNC1 Missense_Mutation p.I358T 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-AS-3778-01 11 18500569 18500569 T C LDHAL6A 3'UTR 0.31 TCGA-AS-3778-01 11 47738988 47738988 C A FNBP4 Missense_Mutation p.A1014S 0.13 tolerated(0.18) benign(0.035) TCGA-AS-3778-01 11 47738989 47738989 C T FNBP4 Missense_Mutation p.M1013I 0.13 tolerated(0.08) benign(0.033) TCGA-AS-3778-01 11 64507132 64507132 G C RASGRP2 Missense_Mutation p.I224M 0.25 deleterious(0.01) probably_damaging(0.912) TCGA-AS-3778-01 11 65392741 65392741 A T PCNXL3 Missense_Mutation p.T1007S 0.31 tolerated(1) benign(0.008) TCGA-AS-3778-01 11 69063305 69063305 G C MYEOV Missense_Mutation p.V130L 0.03 tolerated_low_confidence(0.45) benign(0.002) TCGA-AS-3778-01 12 117681127 117681127 C T NOS1 Silent p.V1013V 0.17 TCGA-AS-3778-01 12 124968161 124968161 C A NCOR2 Missense_Mutation p.G131V 0.26 unknown(0) TCGA-AS-3778-01 12 133219900 133219900 G C POLE Missense_Mutation p.I1487M 0.27 tolerated(0.09) benign(0.061) TCGA-AS-3778-01 12 53162498 53162498 C T KRT76 Silent p.%3D 0.37 TCGA-AS-3778-01 12 53207418 53207418 T C KRT4 Missense_Mutation p.K142R 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-AS-3778-01 12 53917072 53917072 G C ATF7 Missense_Mutation p.Q408E 0.03 tolerated(0.22) benign(0.04) TCGA-AS-3778-01 12 64827305 64827305 C T XPOT Nonsense_Mutation p.Q792* 0.34 TCGA-AS-3778-01 12 73056887 73056887 C T TRHDE Missense_Mutation p.A996V 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-AS-3778-01 14 102453076 102453076 G T DYNC1H1 Missense_Mutation p.E838D 0.05 benign(0.003) TCGA-AS-3778-01 14 102466737 102466737 G A DYNC1H1 Splice_Site p.X1358_splice 0.31 TCGA-AS-3778-01 14 21025051 21025051 G T RNASE9 Missense_Mutation p.P65T 0.06 tolerated(0.11) possibly_damaging(0.701) TCGA-AS-3778-01 14 24885703 24885708 GCAGGA - NYNRIN In_Frame_Del p.R1584_S1585del 0.31 TCGA-AS-3778-01 14 50053045 50053045 T C RPS29 Missense_Mutation p.Y7C 0.34 tolerated(0.07) possibly_damaging(0.886) TCGA-AS-3778-01 14 55625310 55625310 T C DLGAP5 Silent p.P601P 0.32 TCGA-AS-3778-01 14 68118218 68118218 G - ARG2 3'UTR 0.21 TCGA-AS-3778-01 15 40866017 40866017 G C RPUSD2 Missense_Mutation p.G399R 0.24 deleterious(0) probably_damaging(0.996) TCGA-AS-3778-01 15 57913819 57913819 T C MYZAP Missense_Mutation p.L111S 0.32 deleterious(0) probably_damaging(0.927) TCGA-AS-3778-01 15 63030443 63030443 A G TLN2 Missense_Mutation p.N1200D 0.35 tolerated(0.31) benign(0.004) TCGA-AS-3778-01 16 21817482 21817482 C T RRN3P1 RNA 0.25 TCGA-AS-3778-01 16 71682850 71682850 A G PHLPP2 Silent p.P1305P 0.33 TCGA-AS-3778-01 17 36708271 36708271 A C SRCIN1 Missense_Mutation p.F860V 0.32 tolerated(0.1) benign(0.311) TCGA-AS-3778-01 17 4804298 4804298 G A CHRNE Silent p.F263F 0.30 TCGA-AS-3778-01 17 49340732 49340732 A G UTP18 Missense_Mutation p.D147G 0.29 deleterious(0) probably_damaging(0.969) TCGA-AS-3778-01 17 57733326 57733327 - T CLTC Frame_Shift_Ins p.V305Cfs*6 0.36 TCGA-AS-3778-01 17 72443292 72443292 A G GPRC5C 3'UTR 0.43 TCGA-AS-3778-01 17 78196561 78196561 C G SLC26A11 Missense_Mutation p.F114L 0.34 tolerated(0.66) benign(0.008) TCGA-AS-3778-01 17 7909785 7909785 T A GUCY2D Silent p.A377A 0.24 TCGA-AS-3778-01 19 15164766 15164766 G T CASP14 Nonsense_Mutation p.G134* 0.36 TCGA-AS-3778-01 19 33702235 33702235 C G SLC7A10 Splice_Site p.X305_splice 0.32 TCGA-AS-3778-01 19 39051932 39051932 G A RYR1 Silent p.P4154P 0.29 TCGA-AS-3778-01 19 42125683 42125683 A G CEACAM4 3'UTR 0.05 TCGA-AS-3778-01 19 48977501 48977501 G A CYTH2 Missense_Mutation p.V204I 0.32 tolerated(0.1) benign(0.061) TCGA-AS-3778-01 1 109772058 109772058 A G SARS Missense_Mutation p.K104R 0.18 deleterious(0.05) benign(0.287) TCGA-AS-3778-01 1 155300229 155300229 G T RUSC1 Missense_Mutation p.R859I 0.27 deleterious(0.01) benign(0.102) TCGA-AS-3778-01 1 197168567 197168567 T C ZBTB41 Missense_Mutation p.E346G 0.34 deleterious(0.05) benign(0.169) TCGA-AS-3778-01 1 204378920 204378920 T A PPP1R15B Missense_Mutation p.E540D 0.35 tolerated(0.21) benign(0.128) TCGA-AS-3778-01 1 226834969 226834969 G A ITPKB Silent p.Y715Y 0.10 TCGA-AS-3778-01 1 35836039 35836039 C A ZMYM4 Nonsense_Mutation p.S331* 0.26 TCGA-AS-3778-01 1 35836041 35836041 G T ZMYM4 Missense_Mutation p.V332F 0.26 tolerated(0.07) benign(0.091) TCGA-AS-3778-01 1 36755101 36755101 C T THRAP3 Missense_Mutation p.S494F 0.41 tolerated(0.71) possibly_damaging(0.568) TCGA-AS-3778-01 20 30918079 30918079 G A KIF3B Missense_Mutation p.A702T 0.31 tolerated(0.11) possibly_damaging(0.483) TCGA-AS-3778-01 20 62038115 62038115 A G KCNQ2 Missense_Mutation p.I834T 0.25 deleterious(0) probably_damaging(0.962) TCGA-AS-3778-01 22 38536025 38536025 T G PLA2G6 Missense_Mutation p.Y254S 0.27 deleterious(0.01) benign(0.342) TCGA-AS-3778-01 2 234545342 234545342 C T UGT1A10 Silent p.V58V 0.07 TCGA-AS-3778-01 2 31484489 31484489 G A EHD3 Silent p.E330E 0.34 TCGA-AS-3778-01 2 80136837 80136837 C A CTNNA2 Silent p.R324R 0.35 TCGA-AS-3778-01 3 10188268 10188269 - C VHL Frame_Shift_Ins p.S139Ifs*5 0.43 TCGA-AS-3778-01 3 112693830 112693830 C G CD200R1 5'UTR 0.20 TCGA-AS-3778-01 3 136141378 136141379 AC - STAG1 Frame_Shift_Del p.S637Kfs*4 0.26 TCGA-AS-3778-01 3 14200007 14200007 T A XPC Missense_Mutation p.D459V 0.45 deleterious(0.03) benign(0.053) TCGA-AS-3778-01 3 150419916 150419927 ACTCATTTCAGA TCT FAM194A In_Frame_Del p.S148_S151delinsR 0.25 TCGA-AS-3778-01 3 164786516 164786516 C G SI Silent p.R159R 0.03 TCGA-AS-3778-01 3 165547909 165547915 CTTCATT - BCHE Frame_Shift_Del p.N303Hfs*12 0.36 TCGA-AS-3778-01 3 183976532 183976532 T A ECE2 Intron 0.44 TCGA-AS-3778-01 3 37670844 37670844 T G ITGA9 Intron 0.41 TCGA-AS-3778-01 5 131939058 131939058 T C RAD50 Silent p.N758N 0.07 TCGA-AS-3778-01 5 140554161 140554161 C T PCDHB7 Missense_Mutation p.P582L 0.22 deleterious_low_confidence(0) benign(0.223) TCGA-AS-3778-01 5 170725878 170725878 C G RANBP17 3'UTR 0.38 TCGA-AS-3778-01 6 150240312 150240312 T A RAET1G Missense_Mutation p.R166S 0.32 tolerated(0.13) probably_damaging(0.99) TCGA-AS-3778-01 6 152711518 152711518 A T SYNE1 Missense_Mutation p.L2692M 0.16 benign(0.021) TCGA-AS-3778-01 6 47680115 47680115 T - GPR115 Frame_Shift_Del p.S109Lfs*2 0.27 TCGA-AS-3778-01 6 51935825 51935825 G T PKHD1 Missense_Mutation p.H216N 0.28 deleterious(0) benign(0.001) TCGA-AS-3778-01 6 85447027 85447027 G T TBX18 Missense_Mutation p.F400L 0.12 tolerated(0.07) benign(0.017) TCGA-AS-3778-01 7 123302309 123302309 C A LMOD2 Missense_Mutation p.N223K 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-AS-3778-01 7 34981390 34981390 A G DPY19L1 Missense_Mutation p.I486T 0.27 deleterious(0) benign(0.155) TCGA-AS-3778-01 7 7636022 7636022 C T MIOS Silent p.G777G 0.31 TCGA-AS-3778-01 8 100887766 100887766 G T VPS13B Missense_Mutation p.V3981L 0.21 tolerated(0.24) benign(0.097) TCGA-AS-3778-01 8 114448936 114448936 C A CSMD3 Missense_Mutation p.V50F 0.33 tolerated_low_confidence(0.13) benign(0.005) TCGA-AS-3778-01 9 21854722 21854722 A C MTAP Silent p.A181A 0.06 TCGA-AS-3778-01 9 26842275 26842275 A - CAAP1 3'UTR 0.30 TCGA-AS-3778-01 X 135430942 135430942 A G GPR112 Missense_Mutation p.K1693E 0.03 deleterious(0.03) benign(0.03) TCGA-AS-3778-01 X 46529118 46529118 A - SLC9A7 Frame_Shift_Del p.M240Wfs*26 0.09 TCGA-B0-4698-01 10 105165820 105165820 C A PDCD11 Missense_Mutation p.L215M 0.27 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 10 111892129 111892129 C T ADD3 Missense_Mutation p.S600L 0.30 deleterious(0.04) possibly_damaging(0.477) TCGA-B0-4698-01 10 124610002 124610002 C A FAM24B Silent p.A10A 0.16 TCGA-B0-4698-01 10 128973644 128973644 G T FAM196A Missense_Mutation p.A339E 0.42 tolerated(0.09) probably_damaging(0.98) TCGA-B0-4698-01 10 13789762 13789762 C G FRMD4A Silent p.L174L 0.24 TCGA-B0-4698-01 10 15254898 15254898 G A FAM171A1 3'UTR 0.33 TCGA-B0-4698-01 10 18787403 18787403 G A CACNB2 Silent p.K151K 0.15 TCGA-B0-4698-01 10 50916631 50916631 G A C10orf53 Missense_Mutation p.G148R 0.33 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-B0-4698-01 10 50964837 50964837 C T OGDHL Silent p.L120L 0.21 TCGA-B0-4698-01 10 5488714 5488714 G C NET1 Intron 0.10 TCGA-B0-4698-01 10 6063490 6063490 G T IL2RA Silent p.T178T 0.18 TCGA-B0-4698-01 10 68686732 68686732 C A LRRTM3 Missense_Mutation p.P20T 0.12 tolerated(0.51) benign(0.016) TCGA-B0-4698-01 10 69281604 69281604 T C CTNNA3 Missense_Mutation p.Q192R 0.30 deleterious(0.01) benign(0.227) TCGA-B0-4698-01 10 69281605 69281605 G T CTNNA3 Missense_Mutation p.Q192K 0.30 deleterious(0.02) benign(0.149) TCGA-B0-4698-01 10 76861687 76861687 C T DUSP13 Intron 0.11 TCGA-B0-4698-01 10 81064965 81064965 G T ZMIZ1 Silent p.G777G 0.33 TCGA-B0-4698-01 10 888926 888926 C T LARP4B Missense_Mutation p.D198N 0.16 deleterious(0) possibly_damaging(0.647) TCGA-B0-4698-01 10 96535224 96535224 G A CYP2C19 Missense_Mutation p.G137R 0.28 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 11 1016717 1016717 G T MUC6 Silent p.T2028T 0.08 TCGA-B0-4698-01 11 104820329 104820329 C A CASP4 Missense_Mutation p.R241L 0.30 tolerated(0.29) benign(0.38) TCGA-B0-4698-01 11 119216319 119216319 G T MFRP Missense_Mutation p.P151Q 0.17 tolerated(0.09) probably_damaging(0.992) TCGA-B0-4698-01 11 123847904 123847904 T A OR10S1 Silent p.I165I 0.29 TCGA-B0-4698-01 11 123909102 123909102 C T OR10G7 Missense_Mutation p.G203R 0.15 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 11 132184535 132184535 G T NTM Missense_Mutation p.G291V 0.15 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 11 31349668 31349668 G T DCDC1 Missense_Mutation p.P54T 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.678) TCGA-B0-4698-01 11 33565229 33565229 T C KIAA1549L Missense_Mutation p.L410P 0.13 tolerated_low_confidence(0.2) benign(0.006) TCGA-B0-4698-01 11 40136633 40136633 C A LRRC4C Missense_Mutation p.A404S 0.19 tolerated(1) benign(0) TCGA-B0-4698-01 11 4471009 4471009 G T OR52K2 Missense_Mutation p.G147V 0.14 deleterious(0.01) benign(0.309) TCGA-B0-4698-01 11 47369028 47369028 T G MYBPC3 Missense_Mutation p.D285A 0.13 deleterious(0.02) probably_damaging(0.927) TCGA-B0-4698-01 11 5067874 5067874 C - OR52J3 Frame_Shift_Del p.A40Vfs*10 0.26 TCGA-B0-4698-01 11 55681275 55681275 G C OR5W2 Missense_Mutation p.P262A 0.14 deleterious(0.01) possibly_damaging(0.869) TCGA-B0-4698-01 11 55927020 55927020 C A OR8K5 Missense_Mutation p.M258I 0.29 tolerated_low_confidence(0.09) benign(0.065) TCGA-B0-4698-01 11 56043737 56043737 A T OR5T1 Missense_Mutation p.Q208L 0.26 deleterious(0.02) benign(0.16) TCGA-B0-4698-01 11 56085793 56085793 A G OR8K3 Missense_Mutation p.H4R 0.27 tolerated_low_confidence(0.11) benign(0.007) TCGA-B0-4698-01 11 56086250 56086250 T A OR8K3 Silent p.S156S 0.19 TCGA-B0-4698-01 11 56086259 56086259 C A OR8K3 Silent p.V159V 0.24 TCGA-B0-4698-01 11 5618015 5618015 A T TRIM6-TRIM34 5'UTR 0.16 TCGA-B0-4698-01 11 56309842 56309842 G T OR5M11 Missense_Mutation p.Q298K 0.19 tolerated(0.16) benign(0.002) TCGA-B0-4698-01 11 57003436 57003436 G C APLNR Missense_Mutation p.S348W 0.34 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 11 5775922 5775922 G T OR52N4 5'Flank 0.27 TCGA-B0-4698-01 11 58170842 58170842 C T OR5B3 Missense_Mutation p.G14E 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-B0-4698-01 11 58318661 58318661 C A LPXN Missense_Mutation p.K126N 0.32 tolerated(0.14) benign(0.013) TCGA-B0-4698-01 11 59837794 59837794 C G MS4A3 3'UTR 0.19 TCGA-B0-4698-01 11 60231758 60231758 C A MS4A1 Intron 0.14 TCGA-B0-4698-01 11 62297727 62297727 G C AHNAK Missense_Mutation p.P1388A 0.24 probably_damaging(0.999) TCGA-B0-4698-01 11 63057479 63057479 G A SLC22A10 5'Flank 0.33 TCGA-B0-4698-01 11 65688828 65688828 C G DRAP1 Silent p.A180A 0.23 TCGA-B0-4698-01 11 65826444 65826444 G T SF3B2 Missense_Mutation p.E370D 0.21 tolerated(0.07) probably_damaging(0.99) TCGA-B0-4698-01 11 66190644 66190644 G T NPAS4 Missense_Mutation p.W250L 0.18 deleterious(0.01) probably_damaging(1) TCGA-B0-4698-01 11 70201752 70201752 G T PPFIA1 Missense_Mutation p.G775C 0.31 deleterious(0) possibly_damaging(0.722) TCGA-B0-4698-01 11 70319378 70319378 C G SHANK2 Missense_Mutation p.E1717Q 0.28 deleterious(0.04) benign(0.403) TCGA-B0-4698-01 11 72291652 72291652 G A PDE2A Missense_Mutation p.A717V 0.31 deleterious(0.01) possibly_damaging(0.612) TCGA-B0-4698-01 11 74680685 74680685 G T SPCS2 Missense_Mutation p.R145S 0.18 deleterious(0.01) benign(0.342) TCGA-B0-4698-01 11 74880731 74880731 A G SLCO2B1 Missense_Mutation p.M235V 0.19 tolerated(1) benign(0.078) TCGA-B0-4698-01 11 75440015 75440015 C G MOGAT2 Silent p.R277R 0.09 TCGA-B0-4698-01 11 76255554 76255554 C G C11orf30 Silent p.L987L 0.27 TCGA-B0-4698-01 11 763815 763815 G T TALDO1 Missense_Mutation p.A236S 0.15 deleterious(0) probably_damaging(0.97) TCGA-B0-4698-01 11 85436233 85436233 C T SYTL2 Missense_Mutation p.E423K 0.29 tolerated(0.16) possibly_damaging(0.509) TCGA-B0-4698-01 11 85718627 85718627 C A PICALM Splice_Site p.X256_splice 0.14 TCGA-B0-4698-01 11 88780817 88780817 G T GRM5 Missense_Mutation p.T75N 0.25 deleterious(0) probably_damaging(0.977) TCGA-B0-4698-01 11 92573742 92573742 G T FAT3 Silent p.V3461V 0.18 TCGA-B0-4698-01 11 9516226 9516226 G T ZNF143 Missense_Mutation p.A227S 0.11 tolerated(0.73) benign(0.001) TCGA-B0-4698-01 11 9516227 9516227 C T ZNF143 Missense_Mutation p.A227V 0.12 tolerated(0.3) benign(0.001) TCGA-B0-4698-01 12 100795581 100795581 A T SLC17A8 Missense_Mutation p.M235L 0.45 tolerated(0.27) possibly_damaging(0.681) TCGA-B0-4698-01 12 109017190 109017190 C A SELPLG Missense_Mutation p.M314I 0.42 deleterious(0.03) benign(0.125) TCGA-B0-4698-01 12 111893938 111893938 C T ATXN2 Silent p.S1213S 0.14 TCGA-B0-4698-01 12 118637016 118637016 C - TAOK3 Frame_Shift_Del p.G345Afs*11 0.51 TCGA-B0-4698-01 12 121756345 121756345 C A ANAPC5 Missense_Mutation p.L568F 0.45 tolerated(0.06) probably_damaging(0.914) TCGA-B0-4698-01 12 124330395 124330395 T C DNAH10 Missense_Mutation p.V1752A 0.41 probably_damaging(0.927) TCGA-B0-4698-01 12 12974984 12974984 C T DDX47 Silent p.A176A 0.24 TCGA-B0-4698-01 12 131359207 131359207 A T RAN Missense_Mutation p.N122Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.58 deleterious(0.04) probably_damaging(0.993) TCGA-B0-4698-01 12 29450127 29450127 C - FAR2 Frame_Shift_Del p.E182Sfs*3 0.53 TCGA-B0-4698-01 12 32137637 32137637 G T KIAA1551 Nonsense_Mutation p.E1250* 0.62 TCGA-B0-4698-01 12 41316213 41316213 C A CNTN1 Missense_Mutation p.A128E 0.15 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 12 41316215 41316215 A T CNTN1 Missense_Mutation p.T129S 0.15 tolerated(0.74) benign(0.068) TCGA-B0-4698-01 12 50829370 50829370 G T LARP4 Missense_Mutation p.L166F 0.16 deleterious(0) probably_damaging(0.995) TCGA-B0-4698-01 12 53002032 53002032 G C KRT73 Missense_Mutation p.S524C 0.18 tolerated_low_confidence(0.07) benign(0.345) TCGA-B0-4698-01 12 54905764 54905764 C T NCKAP1L Silent p.N272N 0.19 TCGA-B0-4698-01 12 57962772 57962772 C T KIF5A Silent p.A247A 0.18 TCGA-B0-4698-01 12 64815232 64815232 A G XPOT Missense_Mutation p.Y354C 0.19 deleterious(0) probably_damaging(0.952) TCGA-B0-4698-01 12 65110522 65110522 T A GNS Nonstop_Mutation p.*553Lext*16 0.22 TCGA-B0-4698-01 12 69653935 69653935 G A CPSF6 Missense_Mutation p.C476Y 0.13 deleterious(0) possibly_damaging(0.799) TCGA-B0-4698-01 12 70988254 70988254 G A PTPRB Silent p.V503V 0.15 TCGA-B0-4698-01 12 71016414 71016414 G T PTPRB Missense_Mutation p.A155E 0.14 deleterious_low_confidence(0.02) benign(0.359) TCGA-B0-4698-01 12 78400518 78400518 G T NAV3 Silent p.P400P 0.16 TCGA-B0-4698-01 12 78444646 78444646 C A NAV3 Silent p.G745G 0.14 TCGA-B0-4698-01 12 80655811 80655811 C T OTOGL Missense_Mutation p.S642F 0.14 deleterious(0) possibly_damaging(0.902) TCGA-B0-4698-01 12 80672812 80672812 T C OTOGL Missense_Mutation p.C923R 0.14 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 12 95663885 95663885 G T VEZT Missense_Mutation p.G257C 0.16 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 12 97082693 97082693 G T C12orf55 Splice_Site p.X2005_splice 0.35 TCGA-B0-4698-01 12 98989568 98989569 - T SLC25A3 Intron 0.45 TCGA-B0-4698-01 13 109472701 109472701 T G MYO16 Missense_Mutation p.L273R 0.22 deleterious(0.01) probably_damaging(0.943) TCGA-B0-4698-01 13 113743927 113743927 C T MCF2L Silent p.P946P 0.09 TCGA-B0-4698-01 13 25435418 25435418 G T RNF17 Missense_Mutation p.D1263Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-B0-4698-01 13 32799101 32799101 A G FRY Missense_Mutation p.M1650V 0.14 tolerated(0.34) benign(0.029) TCGA-B0-4698-01 13 38166278 38166278 G A POSTN Missense_Mutation p.P81L 0.15 deleterious(0) probably_damaging(0.939) TCGA-B0-4698-01 13 43180848 43180848 C A TNFSF11 Missense_Mutation p.P250T 0.18 tolerated(0.09) benign(0.11) TCGA-B0-4698-01 13 48985552 48985552 C G LPAR6 Missense_Mutation p.K336N 0.13 deleterious(0.05) benign(0.004) TCGA-B0-4698-01 13 48985564 48985564 G T LPAR6 Silent p.T332T 0.12 TCGA-B0-4698-01 13 53624333 53624334 - T OLFM4 Frame_Shift_Ins p.L321Ffs*9 0.22 TCGA-B0-4698-01 13 61103229 61103229 C G TDRD3 Missense_Mutation p.P624A 0.17 deleterious(0.04) benign(0.068) TCGA-B0-4698-01 13 61985432 61985432 C A PCDH20 Nonsense_Mutation p.G934* 0.18 TCGA-B0-4698-01 13 73336102 73336102 T A DIS3 Missense_Mutation p.L767F 0.19 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 13 77642779 77642779 T A MYCBP2 Missense_Mutation p.Q3993L 0.10 probably_damaging(0.921) TCGA-B0-4698-01 13 99992587 99992587 G T UBAC2 Missense_Mutation p.C192F 0.15 tolerated(0.08) benign(0.003) TCGA-B0-4698-01 13 99992588 99992588 C T UBAC2 Silent p.C192C 0.15 TCGA-B0-4698-01 14 101318761 101318761 C A MIR770 RNA 0.29 TCGA-B0-4698-01 14 105408571 105408571 G A AHNAK2 Missense_Mutation p.P4406L 0.41 probably_damaging(0.991) TCGA-B0-4698-01 14 20666455 20666455 C A OR11G2 Missense_Mutation p.P321T 0.16 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 14 31122782 31122782 G T SCFD1 Silent p.V281V 0.19 TCGA-B0-4698-01 14 31626196 31626196 C G HECTD1 Missense_Mutation p.L594F 0.21 deleterious(0.05) possibly_damaging(0.863) TCGA-B0-4698-01 14 33684617 33684617 A C NPAS3 Missense_Mutation p.N124H 0.15 deleterious(0.05) possibly_damaging(0.703) TCGA-B0-4698-01 14 39782554 39782554 G A CTAGE5 Missense_Mutation p.V407I 0.17 deleterious(0.03) benign(0.069) TCGA-B0-4698-01 14 42368164 42368164 G T LRFN5 Splice_Site p.X714_splice 0.21 TCGA-B0-4698-01 14 52782017 52782017 G A PTGER2 Missense_Mutation p.G251R 0.23 tolerated(0.36) benign(0.016) TCGA-B0-4698-01 14 57271026 57271026 C A OTX2 Silent p.T51T 0.10 TCGA-B0-4698-01 14 57272182 57272182 T A OTX2 5'UTR 0.11 TCGA-B0-4698-01 14 60750047 60750047 G A PPM1A Missense_Mutation p.G282D 0.29 tolerated(0.09) possibly_damaging(0.776) TCGA-B0-4698-01 14 70925557 70925557 T C ADAM21 Silent p.A447A 0.12 TCGA-B0-4698-01 14 72054953 72054953 G A SIPA1L1 Missense_Mutation p.V122I 0.14 tolerated(0.41) benign(0.002) TCGA-B0-4698-01 14 72055546 72055546 A T SIPA1L1 Missense_Mutation p.E319D 0.24 tolerated(0.47) benign(0.011) TCGA-B0-4698-01 14 75019597 75019597 A T LTBP2 Missense_Mutation p.I397N 0.18 deleterious(0.02) probably_damaging(0.949) TCGA-B0-4698-01 14 92251635 92251636 - TTCAGTAAG TC2N In_Frame_Ins p.L410_K411insNLL 0.10 TCGA-B0-4698-01 14 92470796 92470796 G C TRIP11 Missense_Mutation p.A1175G 0.13 deleterious(0.01) benign(0.034) TCGA-B0-4698-01 14 94770737 94770737 C A SERPINA6 3'UTR 0.27 TCGA-B0-4698-01 15 24923220 24923220 A T NPAP1 Missense_Mutation p.S736C 0.37 deleterious(0.05) benign(0.341) TCGA-B0-4698-01 15 28230287 28230287 G C OCA2 Silent p.L429L 0.35 TCGA-B0-4698-01 15 42000359 42000359 A T MGA Missense_Mutation p.K793M 0.34 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 15 42158030 42158030 G T SPTBN5 Silent p.R2298R 0.31 TCGA-B0-4698-01 15 42182313 42182313 G T SPTBN5 Missense_Mutation p.Q159K 0.36 probably_damaging(0.998) TCGA-B0-4698-01 15 50544711 50544711 C T HDC Silent p.K319K 0.39 TCGA-B0-4698-01 15 50578233 50578233 C A GABPB1 Intron 0.34 TCGA-B0-4698-01 15 62160895 62160895 T C VPS13C Missense_Mutation p.Y3609C 0.34 deleterious(0) probably_damaging(0.998) TCGA-B0-4698-01 15 62212407 62212407 C A VPS13C Missense_Mutation p.G2446C 0.40 deleterious(0) probably_damaging(0.995) TCGA-B0-4698-01 15 63092887 63092887 T A TLN2 Silent p.T2132T 0.28 TCGA-B0-4698-01 15 88522655 88522655 C A NTRK3 Intron 0.38 TCGA-B0-4698-01 15 90246274 90246274 A T WDR93 Nonsense_Mutation p.K133* 0.37 TCGA-B0-4698-01 16 10863004 10863004 A T NUBP1 3'UTR 0.14 TCGA-B0-4698-01 16 14766509 14766509 G C PLA2G10 Missense_Mutation p.F151L 0.12 tolerated(0.5) benign(0.019) TCGA-B0-4698-01 16 18853041 18853041 T C SMG1 Missense_Mutation p.N2181S 0.25 deleterious(0.04) possibly_damaging(0.823) TCGA-B0-4698-01 16 21771803 21771803 C A OTOA Nonsense_Mutation p.S1121* 0.08 TCGA-B0-4698-01 16 23456471 23456471 A T COG7 Silent p.I111I 0.23 TCGA-B0-4698-01 16 24581549 24581549 C G RBBP6 Missense_Mutation p.P1180A 0.23 deleterious_low_confidence(0) unknown(0) TCGA-B0-4698-01 16 24981887 24981887 C G ARHGAP17 Silent p.L71L 0.32 TCGA-B0-4698-01 16 28511032 28511032 C T IL27 Silent p.L224L 0.50 TCGA-B0-4698-01 16 48120652 48120652 T A ABCC12 Silent p.T1238T 0.13 TCGA-B0-4698-01 16 51173829 51173829 G T SALL1 Nonsense_Mutation p.C768* 0.09 TCGA-B0-4698-01 16 55525800 55525800 C A MMP2 Missense_Mutation p.P423H 0.23 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 16 55539313 55539313 G T MMP2 Missense_Mutation p.V648L 0.10 tolerated(0.41) benign(0.087) TCGA-B0-4698-01 16 56519545 56519545 G C BBS2 Silent p.L672L 0.14 TCGA-B0-4698-01 16 58197995 58197995 C A CSNK2A2 Missense_Mutation p.G345C 0.25 deleterious_low_confidence(0) possibly_damaging(0.572) TCGA-B0-4698-01 16 77242107 77242107 A T SYCE1L Missense_Mutation p.E41V 0.11 tolerated(0.3) probably_damaging(0.999) TCGA-B0-4698-01 16 90128854 90128854 G C PRDM7 Missense_Mutation p.H189D 0.15 tolerated(0.4) benign(0.085) TCGA-B0-4698-01 17 10227548 10227548 A C MYH13 Missense_Mutation p.C909G 0.14 deleterious(0) probably_damaging(0.986) TCGA-B0-4698-01 17 10346624 10346624 C T MYH4 3'UTR 0.42 TCGA-B0-4698-01 17 10363353 10363353 G A MYH4 Silent p.T444T 0.29 TCGA-B0-4698-01 17 10443963 10443963 C A MYH2 Missense_Mutation p.G319V 0.40 deleterious(0) probably_damaging(0.982) TCGA-B0-4698-01 17 10451259 10451259 T C MYH2 Splice_Site 0.33 TCGA-B0-4698-01 17 18155087 18155087 C T FLII Silent p.L430L 0.35 TCGA-B0-4698-01 17 37263726 37263726 G T PLXDC1 Missense_Mutation p.D215E 0.15 tolerated(0.06) benign(0.082) TCGA-B0-4698-01 17 39503312 39503312 C A KRT33A Splice_Site p.X250_splice 0.16 TCGA-B0-4698-01 17 4008059 4008059 G T ZZEF1 Missense_Mutation p.L481I 0.42 deleterious(0) probably_damaging(0.998) TCGA-B0-4698-01 17 40557107 40557107 G C PTRF Silent p.L257L 0.15 TCGA-B0-4698-01 17 45747041 45747041 C T KPNB1 Intron 0.28 TCGA-B0-4698-01 17 45822735 45822735 A T TBX21 3'UTR 0.34 TCGA-B0-4698-01 17 46153440 46153440 C T CBX1 Missense_Mutation p.E81K 0.28 tolerated(0.38) benign(0.005) TCGA-B0-4698-01 17 47700115 47700115 C G SPOP Missense_Mutation p.E20Q 0.16 tolerated(0.05) possibly_damaging(0.873) TCGA-B0-4698-01 17 58121011 58121011 G T HEATR6 Silent p.A1153A 0.22 TCGA-B0-4698-01 17 61666513 61666513 C T DCAF7 Silent p.C136C 0.17 TCGA-B0-4698-01 17 61988148 61988148 C A CSHL1 Silent p.L49L 0.26 TCGA-B0-4698-01 17 62496104 62496104 T C DDX5 Silent p.A594A 0.28 TCGA-B0-4698-01 17 72539061 72539061 G A CD300C Missense_Mutation p.P156S 0.18 tolerated(0.27) benign(0.04) TCGA-B0-4698-01 17 73261781 73261781 A G MRPS7 Splice_Site p.X170_splice 0.19 TCGA-B0-4698-01 17 7577538 7577538 C A TP53 Missense_Mutation p.R248L 0.55 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 17 77808933 77808933 C A CBX4 Missense_Mutation p.D170Y 0.27 deleterious(0) probably_damaging(0.931) TCGA-B0-4698-01 17 78109855 78109855 G C EIF4A3 Silent p.L389L 0.10 TCGA-B0-4698-01 17 79477665 79477665 T C ACTG1 3'UTR 0.25 TCGA-B0-4698-01 17 8141530 8141530 G A CTC1 Missense_Mutation p.H156Y 0.34 tolerated(0.1) probably_damaging(0.916) TCGA-B0-4698-01 18 14828300 14828300 A C ANKRD30B Missense_Mutation p.T804P 0.12 tolerated(0.28) benign(0.25) TCGA-B0-4698-01 18 28587079 28587079 C A DSC3 Missense_Mutation p.G561V 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-B0-4698-01 18 30257170 30257170 C G KLHL14 Missense_Mutation p.S571T 0.19 deleterious(0.03) benign(0.085) TCGA-B0-4698-01 18 44190816 44190816 G T LOXHD1 Missense_Mutation p.P228T 0.20 tolerated(0.52) probably_damaging(0.958) TCGA-B0-4698-01 18 56247052 56247052 G A ALPK2 Missense_Mutation p.T319I 0.14 deleterious(0) possibly_damaging(0.559) TCGA-B0-4698-01 18 61379818 61379818 T C SERPINB11 Missense_Mutation p.I83T 0.18 deleterious(0.04) benign(0.055) TCGA-B0-4698-01 18 61387274 61387274 G A SERPINB11 Missense_Mutation p.S168N 0.19 tolerated(0.05) benign(0.002) TCGA-B0-4698-01 18 64218440 64218440 T A CDH19 Silent p.V222V 0.14 TCGA-B0-4698-01 18 65181324 65181324 T C DSEL Silent p.L184L 0.20 TCGA-B0-4698-01 18 67860582 67860582 C A RTTN Missense_Mutation p.G317W 0.19 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 18 70526106 70526106 C G NETO1 Missense_Mutation p.E142Q 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-B0-4698-01 18 77794644 77794644 C G RBFA Missense_Mutation p.S50W 0.36 deleterious(0) probably_damaging(0.979) TCGA-B0-4698-01 18 8638145 8638145 A G RAB12 Splice_Site p.X208_splice 0.10 TCGA-B0-4698-01 19 12060983 12060983 A G ZNF700 Missense_Mutation p.Y715C 0.34 tolerated(0.18) possibly_damaging(0.477) TCGA-B0-4698-01 19 13060094 13060094 G C RAD23A Missense_Mutation p.E229Q 0.32 tolerated(0.43) benign(0.009) TCGA-B0-4698-01 19 15164633 15164633 C A CASP14 Missense_Mutation p.H89Q 0.30 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 19 15490548 15490548 C T AKAP8 5'UTR 0.23 TCGA-B0-4698-01 19 20044450 20044450 A G ZNF93 Missense_Mutation p.Y229C 0.20 deleterious(0.04) possibly_damaging(0.496) TCGA-B0-4698-01 19 22362589 22362589 G A ZNF676 3'UTR 0.24 TCGA-B0-4698-01 19 22363368 22363368 T A ZNF676 Missense_Mutation p.K384M 0.26 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 19 2273117 2273117 G T OAZ1 3'UTR 0.33 TCGA-B0-4698-01 19 22941758 22941758 C A ZNF99 Missense_Mutation p.C318F 0.10 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 19 31769648 31769648 C A TSHZ3 Missense_Mutation p.A351S 0.28 tolerated(0.79) benign(0.003) TCGA-B0-4698-01 19 37441746 37441746 G T ZNF568 Missense_Mutation p.G564V 0.12 deleterious(0) possibly_damaging(0.653) TCGA-B0-4698-01 19 38995000 38995000 G A RYR1 Silent p.K2689K 0.20 TCGA-B0-4698-01 19 43257342 43257342 G T PSG8 3'Flank 0.12 TCGA-B0-4698-01 19 43421973 43421973 G T PSG6 5'UTR 0.33 TCGA-B0-4698-01 19 43439556 43439556 G A PSG7 Silent p.L144L 0.18 TCGA-B0-4698-01 19 43709685 43709685 C A PSG4 Missense_Mutation p.G2W 0.14 deleterious(0) probably_damaging(0.977) TCGA-B0-4698-01 19 43920339 43920339 G A TEX101 Silent p.V69V 0.12 TCGA-B0-4698-01 19 44470544 44470544 T C ZNF221 Missense_Mutation p.L297P 0.12 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 19 44536593 44536593 C T ZNF222 Missense_Mutation p.P296S 0.26 deleterious(0.03) benign(0.238) TCGA-B0-4698-01 19 44891488 44891488 G T ZNF285 Missense_Mutation p.Q307K 0.30 tolerated(0.78) benign(0.053) TCGA-B0-4698-01 19 45024546 45024546 C G CEACAM20 RNA 0.24 TCGA-B0-4698-01 19 49657301 49657301 G T HRC Silent p.G398G 0.17 TCGA-B0-4698-01 19 50363310 50363310 C T PTOV1 Missense_Mutation p.S370L 0.22 tolerated(0.07) benign(0.028) TCGA-B0-4698-01 19 52870019 52870019 G T ZNF610 Nonstop_Mutation p.*463Lext*6 0.31 TCGA-B0-4698-01 19 53912993 53912993 A T ZNF765 3'UTR 0.32 TCGA-B0-4698-01 19 54403578 54403578 C A PRKCG Missense_Mutation p.A458E 0.21 tolerated(0.05) possibly_damaging(0.462) TCGA-B0-4698-01 19 55107654 55107654 G T LILRA1 Missense_Mutation p.G320V 0.23 deleterious(0.01) possibly_damaging(0.573) TCGA-B0-4698-01 19 56303777 56303777 G T NLRP11 Missense_Mutation p.F801L 0.11 tolerated(1) benign(0) TCGA-B0-4698-01 19 56369308 56369308 G T NLRP4 Silent p.L183L 0.20 TCGA-B0-4698-01 19 57328837 57328837 T A PEG3 Missense_Mutation p.S325C 0.11 deleterious(0.01) possibly_damaging(0.784) TCGA-B0-4698-01 19 7806503 7806503 C A CD209 3'UTR 0.28 TCGA-B0-4698-01 19 8586403 8586403 G T MYO1F 3'UTR 0.28 TCGA-B0-4698-01 19 9008255 9008255 C T MUC16 Silent p.L13099L 0.10 TCGA-B0-4698-01 19 9060477 9060477 G A MUC16 Missense_Mutation p.T8990I 0.14 unknown(0) TCGA-B0-4698-01 19 9091613 9091613 T C MUC16 Missense_Mutation p.T68A 0.12 unknown(0) TCGA-B0-4698-01 19 966835 966835 C T ARID3A Nonsense_Mutation p.Q488* 0.24 TCGA-B0-4698-01 1 104116926 104116926 T A AMY2B Missense_Mutation p.F263L 0.32 tolerated(0.65) benign(0.024) TCGA-B0-4698-01 1 114437838 114437838 C A AP4B1 Missense_Mutation p.G690V 0.29 deleterious(0.03) possibly_damaging(0.744) TCGA-B0-4698-01 1 114437839 114437839 C A AP4B1 Missense_Mutation p.G690C 0.30 deleterious(0.01) probably_damaging(0.943) TCGA-B0-4698-01 1 11595156 11595156 G T PTCHD2 Silent p.L1208L 0.33 TCGA-B0-4698-01 1 120269704 120269704 G T PHGDH Silent p.R163R 0.22 TCGA-B0-4698-01 1 12907886 12907886 G T HNRNPCL1 Missense_Mutation p.A86E 0.09 deleterious(0.02) benign(0.179) TCGA-B0-4698-01 1 12939386 12939386 C T PRAMEF4 Silent p.E472E 0.29 TCGA-B0-4698-01 1 147231036 147231036 T C GJA5 Missense_Mutation p.E104G 0.15 deleterious(0.03) possibly_damaging(0.857) TCGA-B0-4698-01 1 155029456 155029456 G T ADAM15 Missense_Mutation p.A343S 0.52 deleterious(0) probably_damaging(0.919) TCGA-B0-4698-01 1 158435381 158435381 A G OR10K1 Silent p.R10R 0.18 TCGA-B0-4698-01 1 167663487 167663487 C A RCSD1 Missense_Mutation p.P141H 0.45 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 1 167666424 167666424 G T RCSD1 Missense_Mutation p.R188M 0.22 tolerated(0.05) probably_damaging(0.935) TCGA-B0-4698-01 1 167666425 167666425 G T RCSD1 Missense_Mutation p.R188S 0.25 tolerated(0.4) possibly_damaging(0.606) TCGA-B0-4698-01 1 16893731 16893731 T A NBPF1 Nonsense_Mutation p.R928* 0.02 TCGA-B0-4698-01 1 17316435 17316435 T A ATP13A2 Missense_Mutation p.S826C 0.39 deleterious(0.02) probably_damaging(0.943) TCGA-B0-4698-01 1 17721532 17721532 T A PADI6 RNA 0.15 TCGA-B0-4698-01 1 180914625 180914625 T A KIAA1614 Silent p.G1158G 0.43 TCGA-B0-4698-01 1 19238482 19238482 T C IFFO2 Missense_Mutation p.N400S 0.09 tolerated(0.34) probably_damaging(0.944) TCGA-B0-4698-01 1 196654360 196654360 A G CFH Silent p.R319R 0.33 TCGA-B0-4698-01 1 21030948 21030948 C A KIF17 Missense_Mutation p.S372I 0.09 tolerated(0.1) benign(0.007) TCGA-B0-4698-01 1 211960974 211960974 C A LPGAT1 Missense_Mutation p.Q151H 0.34 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 1 220363455 220363455 G A RAB3GAP2 Silent p.H555H 0.30 TCGA-B0-4698-01 1 228004999 228004999 G T PRSS38 Missense_Mutation p.R134M 0.32 deleterious(0) probably_damaging(0.949) TCGA-B0-4698-01 1 237798238 237798238 G T RYR2 Silent p.S2246S 0.38 TCGA-B0-4698-01 1 238090541 238090541 C A RP11-193H5.1 RNA 0.40 TCGA-B0-4698-01 1 238090542 238090542 C A RP11-193H5.1 RNA 0.40 TCGA-B0-4698-01 1 241815818 241815818 T A WDR64 Missense_Mutation p.M11K 0.27 tolerated(0.3) benign(0.001) TCGA-B0-4698-01 1 24454648 24454648 C A IL22RA1 Missense_Mutation p.R218L 0.35 tolerated(0.1) benign(0.136) TCGA-B0-4698-01 1 247654474 247654474 G T OR2W5 RNA 0.32 TCGA-B0-4698-01 1 247655163 247655163 C A OR2W5 RNA 0.39 TCGA-B0-4698-01 1 247695749 247695749 G T OR2C3 Missense_Mutation p.P22H 0.38 deleterious(0) probably_damaging(0.998) TCGA-B0-4698-01 1 247901937 247901937 G T OR14K1 Missense_Mutation p.M7I 0.19 tolerated(0.26) benign(0.001) TCGA-B0-4698-01 1 247920984 247920984 C A OR1C1 Missense_Mutation p.S242I 0.40 deleterious(0) benign(0.01) TCGA-B0-4698-01 1 248059399 248059399 C G OR2W3 Missense_Mutation p.H171D 0.26 deleterious(0.01) benign(0.219) TCGA-B0-4698-01 1 248112575 248112575 T A OR2L8 Missense_Mutation p.V139E 0.29 deleterious(0.01) benign(0.314) TCGA-B0-4698-01 1 26691325 26691325 T A ZNF683 Missense_Mutation p.M238L 0.40 tolerated(0.17) benign(0.222) TCGA-B0-4698-01 1 27939590 27939590 G T FGR Nonsense_Mutation p.Y475* 0.45 TCGA-B0-4698-01 1 32140871 32140871 G C COL16A1 Silent p.L938L 0.24 TCGA-B0-4698-01 1 38343949 38343949 C A INPP5B Missense_Mutation p.G530W 0.10 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 1 52486630 52486630 T C TXNDC12 Missense_Mutation p.K165R 0.17 tolerated_low_confidence(0.17) benign(0) TCGA-B0-4698-01 1 52940782 52940782 C T ZCCHC11 Missense_Mutation p.D817N 0.20 tolerated(0.21) benign(0.003) TCGA-B0-4698-01 1 53715125 53715125 G A LRP8 Missense_Mutation p.P927L 0.24 tolerated_low_confidence(0.11) benign(0.004) TCGA-B0-4698-01 1 59248684 59248684 G A JUN Missense_Mutation p.P20L 0.16 tolerated(0.65) benign(0.085) TCGA-B0-4698-01 1 70477482 70477482 T C LRRC7 Missense_Mutation p.L298S 0.13 deleterious(0) probably_damaging(0.997) TCGA-B0-4698-01 1 75688056 75688056 C A SLC44A5 Nonsense_Mutation p.E359* 0.19 TCGA-B0-4698-01 1 76365392 76365392 G T MSH4 Splice_Site p.X873_splice 0.17 TCGA-B0-4698-01 1 77949041 77949041 G A AK5 Missense_Mutation p.G367R 0.20 tolerated(0.44) benign(0.391) TCGA-B0-4698-01 1 7848257 7848257 G T PER3 Silent p.A181A 0.18 TCGA-B0-4698-01 1 92948559 92948559 G - GFI1 Frame_Shift_Del p.R54Vfs*8 0.32 TCGA-B0-4698-01 1 99418635 99418635 C A LPPR5 Missense_Mutation p.M204I 0.15 tolerated(0.11) benign(0.012) TCGA-B0-4698-01 20 1552640 1552640 G A SIRPB1 Silent p.A159A 0.25 TCGA-B0-4698-01 20 25273199 25273199 C T PYGB Silent p.L709L 0.23 TCGA-B0-4698-01 20 2688619 2688619 G T EBF4 Missense_Mutation p.K143N 0.24 deleterious(0) benign(0.261) TCGA-B0-4698-01 20 29845519 29845519 T A DEFB115 Missense_Mutation p.L18Q 0.24 deleterious(0) probably_damaging(0.984) TCGA-B0-4698-01 20 36989418 36989418 C G LBP Missense_Mutation p.P217A 0.21 deleterious(0.02) probably_damaging(0.976) TCGA-B0-4698-01 20 37191290 37191290 C G RALGAPB Missense_Mutation p.S1216C 0.23 deleterious(0.01) possibly_damaging(0.58) TCGA-B0-4698-01 20 3897572 3897572 A G PANK2 Splice_Site p.X471_splice 0.25 TCGA-B0-4698-01 20 42195100 42195100 C T SGK2 Missense_Mutation p.P49S 0.24 tolerated_low_confidence(0.76) benign(0.014) TCGA-B0-4698-01 20 42340206 42340206 G T MYBL2 Missense_Mutation p.D562Y 0.20 deleterious(0) probably_damaging(0.939) TCGA-B0-4698-01 20 43386328 43386328 C T RIMS4 Missense_Mutation p.G146D 0.22 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-B0-4698-01 20 43386329 43386329 C T RIMS4 Missense_Mutation p.G146S 0.23 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-B0-4698-01 20 55949780 55949780 G T RAE1 Missense_Mutation p.D315Y 0.25 deleterious(0.02) possibly_damaging(0.677) TCGA-B0-4698-01 20 60705692 60705692 C G LSM14B Silent p.A260A 0.23 TCGA-B0-4698-01 21 16339802 16339802 C G NRIP1 Missense_Mutation p.A238P 0.16 deleterious(0.05) probably_damaging(0.999) TCGA-B0-4698-01 21 22707913 22707913 G A NCAM2 Missense_Mutation p.G276S 0.16 tolerated(0.17) benign(0.063) TCGA-B0-4698-01 21 27938688 27938688 C A CYYR1 Splice_Site p.X25_splice 0.20 TCGA-B0-4698-01 21 30302666 30302666 A - LTN1 3'UTR 0.17 TCGA-B0-4698-01 21 32185395 32185395 G T KRTAP8-1 Silent p.G48G 0.21 TCGA-B0-4698-01 21 37744823 37744823 G C MORC3 Missense_Mutation p.G887A 0.19 tolerated(0.34) benign(0.354) TCGA-B0-4698-01 21 41423985 41423985 A T DSCAM Silent p.A1695A 0.21 TCGA-B0-4698-01 21 41559082 41559082 C G DSCAM Missense_Mutation p.D919H 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-B0-4698-01 21 45810792 45810792 C A TRPM2 Silent p.R442R 0.16 TCGA-B0-4698-01 21 46047699 46047699 G A KRTAP10-9 Missense_Mutation p.G204E 0.16 tolerated(0.17) probably_damaging(0.982) TCGA-B0-4698-01 22 17073139 17073139 C A CCT8L2 Missense_Mutation p.S101I 0.33 tolerated(0.48) benign(0.03) TCGA-B0-4698-01 22 18016871 18016871 C A CECR2 Silent p.S375S 0.53 TCGA-B0-4698-01 22 18463649 18463649 C A MICAL3 Intron 0.48 TCGA-B0-4698-01 22 26422769 26422769 A T MYO18B Missense_Mutation p.T2277S 0.47 tolerated(0.43) benign(0.099) TCGA-B0-4698-01 22 26743707 26743707 C A SEZ6L Nonsense_Mutation p.C745* 0.47 TCGA-B0-4698-01 22 30035077 30035077 A G NF2 Splice_Site p.X81_splice 0.38 TCGA-B0-4698-01 22 31042853 31042853 C T SLC35E4 Silent p.L296L 0.52 TCGA-B0-4698-01 22 40054965 40054965 G A CACNA1I Missense_Mutation p.G725D 0.38 deleterious(0) probably_damaging(0.982) TCGA-B0-4698-01 22 41537063 41537063 C G EP300 Nonsense_Mutation p.Y630* 0.36 TCGA-B0-4698-01 22 43715948 43715948 C G SCUBE1 Missense_Mutation p.C115S 0.42 deleterious(0) possibly_damaging(0.752) TCGA-B0-4698-01 2 102805692 102805692 G T IL1RL2 Missense_Mutation p.R72I 0.12 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 2 11053110 11053110 G T KCNF1 Silent p.V186V 0.30 TCGA-B0-4698-01 2 113520091 113520091 G A CKAP2L Silent p.S31S 0.30 TCGA-B0-4698-01 2 114004442 114004442 G T PAX8 Missense_Mutation p.P27Q 0.36 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 2 132021725 132021725 G T POTEE Missense_Mutation p.R899S 0.10 tolerated_low_confidence(1) benign(0.044) TCGA-B0-4698-01 2 136579833 136579833 T A LCT Intron 0.21 TCGA-B0-4698-01 2 141625723 141625723 G T LRP1B Missense_Mutation p.P1427T 0.14 possibly_damaging(0.876) TCGA-B0-4698-01 2 141812733 141812733 G T LRP1B Missense_Mutation p.R502S 0.12 benign(0.353) TCGA-B0-4698-01 2 148653999 148653999 C A ACVR2A Missense_Mutation p.A62D 0.14 deleterious(0) possibly_damaging(0.828) TCGA-B0-4698-01 2 152534455 152534455 A T NEB Missense_Mutation p.Y1168N 0.28 probably_damaging(0.999) TCGA-B0-4698-01 2 158152237 158152237 C G GALNT5 Missense_Mutation p.L602V 0.30 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 2 168107402 168107402 G T XIRP2 Missense_Mutation p.R3167I 0.15 benign(0.036) TCGA-B0-4698-01 2 168115487 168115487 A T XIRP2 3'UTR 0.15 TCGA-B0-4698-01 2 168811903 168811903 G A STK39 3'UTR 0.18 TCGA-B0-4698-01 2 17698046 17698046 C A RAD51AP2 Missense_Mutation p.G546V 0.11 tolerated(0.32) benign(0.018) TCGA-B0-4698-01 2 179437315 179437315 C G TTN Missense_Mutation p.R24515T 0.10 TCGA-B0-4698-01 2 179498592 179498592 T C TTN Missense_Mutation p.K14212E 0.28 TCGA-B0-4698-01 2 185801213 185801213 G T ZNF804A Missense_Mutation p.D364Y 0.30 deleterious(0.02) possibly_damaging(0.888) TCGA-B0-4698-01 2 200213739 200213739 C T SATB2 Silent p.V286V 0.17 TCGA-B0-4698-01 2 210594977 210594977 A G MAP2 Silent p.T1780T 0.15 TCGA-B0-4698-01 2 210690665 210690665 C G UNC80 Missense_Mutation p.A789G 0.11 probably_damaging(0.987) TCGA-B0-4698-01 2 211081075 211081075 C A ACADL Nonsense_Mutation p.G178* 0.26 TCGA-B0-4698-01 2 211464267 211464267 C T CPS1 Nonsense_Mutation p.Q517* 0.28 TCGA-B0-4698-01 2 214794710 214794710 G C SPAG16 Missense_Mutation p.G414A 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-B0-4698-01 2 220473343 220473343 G A STK11IP Missense_Mutation p.G559R 0.27 deleterious(0.04) benign(0.058) TCGA-B0-4698-01 2 220494112 220494112 C A SLC4A3 Missense_Mutation p.P155H 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.794) TCGA-B0-4698-01 2 223158448 223158448 C A PAX3 Intron 0.13 TCGA-B0-4698-01 2 231865130 231865130 C A SPATA3 Silent p.P117P 0.42 TCGA-B0-4698-01 2 233433726 233433726 G T EIF4E2 Nonstop_Mutation p.*246Lext*43 0.12 TCGA-B0-4698-01 2 233433727 233433727 A G EIF4E2 Nonstop_Mutation p.*246Wext*43 0.13 TCGA-B0-4698-01 2 24990993 24990993 A G NCOA1 Intron 0.28 TCGA-B0-4698-01 2 27716345 27716345 C G FNDC4 Missense_Mutation p.G152A 0.18 tolerated(0.13) probably_damaging(0.981) TCGA-B0-4698-01 2 27716346 27716346 C T FNDC4 Splice_Site p.X152_splice 0.18 TCGA-B0-4698-01 2 33586540 33586540 G T LTBP1 Missense_Mutation p.A1410S 0.28 tolerated(1) benign(0.001) TCGA-B0-4698-01 2 38179130 38179130 A T RMDN2 Missense_Mutation p.T258S 0.32 tolerated_low_confidence(0.16) benign(0.017) TCGA-B0-4698-01 2 40656301 40656301 C A SLC8A1 Nonsense_Mutation p.G374* 0.15 TCGA-B0-4698-01 2 60679676 60679676 G T BCL11A 3'Flank 0.38 TCGA-B0-4698-01 2 61020764 61020764 A T PAPOLG Missense_Mutation p.N561I 0.35 deleterious(0.02) benign(0.017) TCGA-B0-4698-01 2 61020766 61020766 A T PAPOLG Missense_Mutation p.S562C 0.35 deleterious(0.03) benign(0.001) TCGA-B0-4698-01 2 63283353 63283353 G T OTX1 Missense_Mutation p.G323C 0.21 tolerated(0.09) unknown(0) TCGA-B0-4698-01 2 63283354 63283354 G T OTX1 Missense_Mutation p.G323V 0.22 tolerated(0.15) unknown(0) TCGA-B0-4698-01 2 74842094 74842094 C A M1AP Silent p.L141L 0.27 TCGA-B0-4698-01 2 86353001 86353001 C A PTCD3 Missense_Mutation p.L317M 0.13 tolerated(0.11) benign(0.156) TCGA-B0-4698-01 2 89475867 89475867 C A IGKV2-24 Missense_Mutation p.R102M 0.17 deleterious(0.03) benign(0.216) TCGA-B0-4698-01 2 90108865 90108865 C T IGKV6D-41 Nonsense_Mutation p.Q44* 0.17 TCGA-B0-4698-01 2 90212122 90212122 T A IGKV3D-11 Missense_Mutation p.S72T 0.22 tolerated(0.15) benign(0.07) TCGA-B0-4698-01 2 96628287 96628287 G C ANKRD36C Missense_Mutation p.Q270E 0.15 tolerated(0.16) benign(0.044) TCGA-B0-4698-01 3 112538738 112538738 G C CD200R1L Silent p.L228L 0.13 TCGA-B0-4698-01 3 113955824 113955824 T A ZNF80 Missense_Mutation p.D33V 0.19 deleterious(0) benign(0.147) TCGA-B0-4698-01 3 118922769 118922769 G A UPK1B Nonsense_Mutation p.W246* 0.13 TCGA-B0-4698-01 3 119336979 119336979 G T PLA1A Missense_Mutation p.A290S 0.11 tolerated(0.62) benign(0.034) TCGA-B0-4698-01 3 119887137 119887137 G T GPR156 Missense_Mutation p.P396Q 0.44 deleterious(0.03) possibly_damaging(0.494) TCGA-B0-4698-01 3 120401125 120401125 A G HGD 5'UTR 0.37 TCGA-B0-4698-01 3 121238865 121238865 C T POLQ Missense_Mutation p.A441T 0.20 deleterious(0.02) possibly_damaging(0.68) TCGA-B0-4698-01 3 121646672 121646672 G C SLC15A2 Missense_Mutation p.E398Q 0.11 tolerated(1) benign(0.04) TCGA-B0-4698-01 3 124482541 124482541 G A ITGB5 Missense_Mutation p.P777S 0.12 tolerated(0.76) benign(0.113) TCGA-B0-4698-01 3 130128209 130128209 G T COL6A5 Nonsense_Mutation p.E1507* 0.11 TCGA-B0-4698-01 3 130145235 130145235 C A COL6A5 Silent p.R1742R 0.14 TCGA-B0-4698-01 3 130159021 130159021 C A COL6A5 Missense_Mutation p.P1947T 0.15 deleterious(0) possibly_damaging(0.887) TCGA-B0-4698-01 3 147106504 147106504 C A ZIC4 3'UTR 0.27 TCGA-B0-4698-01 3 147106505 147106505 A T ZIC4 3'UTR 0.27 TCGA-B0-4698-01 3 15492901 15492901 T A COLQ 3'UTR 0.48 TCGA-B0-4698-01 3 167248986 167248986 C T WDR49 Missense_Mutation p.R360H 0.15 tolerated(0.56) benign(0.001) TCGA-B0-4698-01 3 179051269 179051269 G T ZNF639 Missense_Mutation p.A173S 0.32 tolerated(0.32) benign(0.001) TCGA-B0-4698-01 3 183446521 183446521 C A YEATS2 Missense_Mutation p.H232N 0.12 deleterious(0) probably_damaging(0.975) TCGA-B0-4698-01 3 184008940 184008940 C A ECE2 Silent p.V767V 0.15 TCGA-B0-4698-01 3 184045649 184045649 C G EIF4G1 Nonsense_Mutation p.S1278* 0.21 TCGA-B0-4698-01 3 195507308 195507308 C A MUC4 Missense_Mutation p.V3715F 0.19 benign(0) TCGA-B0-4698-01 3 19575025 19575025 G C KCNH8 Missense_Mutation p.E920Q 0.25 tolerated_low_confidence(0.22) benign(0.177) TCGA-B0-4698-01 3 25662180 25662180 C G TOP2B Missense_Mutation p.W947S 0.13 deleterious(0) probably_damaging(0.99) TCGA-B0-4698-01 3 38655483 38655483 G T SCN5A Missense_Mutation p.T229N 0.24 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 3 46944258 46944258 T C PTH1R Missense_Mutation p.I458T 0.15 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 3 49158776 49158776 C T LAMB2 Silent p.E1760E 0.11 TCGA-B0-4698-01 3 52548464 52548464 C T STAB1 Silent p.S1210S 0.40 TCGA-B0-4698-01 3 53766941 53766941 C - CACNA1D Frame_Shift_Del p.I880Sfs*18 0.17 TCGA-B0-4698-01 3 53844298 53844298 G C CACNA1D Missense_Mutation p.Q2075H 0.14 tolerated_low_confidence(0.56) possibly_damaging(0.66) TCGA-B0-4698-01 3 75790837 75790837 C G ZNF717 Missense_Mutation p.W36C 0.35 deleterious(0) probably_damaging(0.971) TCGA-B0-4698-01 3 78734962 78734962 A G ROBO1 Missense_Mutation p.Y426H 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-B0-4698-01 3 89156748 89156748 C A EPHA3 5'UTR 0.36 TCGA-B0-4698-01 3 97124040 97124040 T G EPHA6 Missense_Mutation p.N551K 0.27 tolerated(0.25) possibly_damaging(0.493) TCGA-B0-4698-01 4 10445233 10445233 G T ZNF518B Missense_Mutation p.P907H 0.29 deleterious(0.02) possibly_damaging(0.635) TCGA-B0-4698-01 4 123268780 123268780 G T KIAA1109 Missense_Mutation p.Q4325H 0.33 possibly_damaging(0.593) TCGA-B0-4698-01 4 126240531 126240531 G C FAT4 Missense_Mutation p.V989L 0.34 probably_damaging(0.983) TCGA-B0-4698-01 4 146474959 146474959 G T SMAD1 Missense_Mutation p.G341W 0.30 deleterious(0) possibly_damaging(0.843) TCGA-B0-4698-01 4 149357954 149357954 C A NR3C2 Missense_Mutation p.G20V 0.23 tolerated_low_confidence(0.13) benign(0.042) TCGA-B0-4698-01 4 154787 154787 G C ZNF718 RNA 0.15 TCGA-B0-4698-01 4 155437 155437 C T ZNF718 RNA 0.08 TCGA-B0-4698-01 4 177114720 177114720 C T SPATA4 Missense_Mutation p.G78S 0.36 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 4 46252537 46252537 G T GABRA2 Missense_Mutation p.P382T 0.23 tolerated(0.14) benign(0.008) TCGA-B0-4698-01 4 55146591 55146591 C A PDGFRA Silent p.S755S 0.31 TCGA-B0-4698-01 4 62813953 62813953 C T LPHN3 Silent p.L854L 0.14 TCGA-B0-4698-01 4 62849122 62849122 G T LPHN3 Missense_Mutation p.A945S 0.12 deleterious(0.03) probably_damaging(0.95) TCGA-B0-4698-01 4 66230825 66230825 T A EPHA5 Nonsense_Mutation p.K716* 0.11 TCGA-B0-4698-01 4 74353495 74353495 T C AFM Missense_Mutation p.C224R 0.27 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 4 89199638 89199638 C T PPM1K Missense_Mutation p.R33Q 0.14 tolerated_low_confidence(0.39) benign(0) TCGA-B0-4698-01 4 89527158 89527158 A T HERC3 Missense_Mutation p.T62S 0.29 tolerated(0.21) benign(0.101) TCGA-B0-4698-01 4 90816128 90816128 G T MMRN1 Missense_Mutation p.K2N 0.17 deleterious_low_confidence(0.04) benign(0.022) TCGA-B0-4698-01 5 102886422 102886422 C G NUDT12 3'UTR 0.32 TCGA-B0-4698-01 5 10461395 10461395 C A ROPN1L Missense_Mutation p.R173S 0.19 tolerated(0.7) benign(0.005) TCGA-B0-4698-01 5 127625573 127625573 C A FBN2 Splice_Site p.X2171_splice 0.27 TCGA-B0-4698-01 5 127625574 127625574 C A FBN2 Missense_Mutation p.D2171Y 0.27 deleterious(0) probably_damaging(0.981) TCGA-B0-4698-01 5 130791707 130791707 T A RAPGEF6 Splice_Site p.X955_splice 0.21 TCGA-B0-4698-01 5 131911583 131911583 G T RAD50 Nonsense_Mutation p.E110* 0.29 TCGA-B0-4698-01 5 140181073 140181073 G C PCDHA3 Silent p.G97G 0.31 TCGA-B0-4698-01 5 140182095 140182095 C A PCDHA3 Missense_Mutation p.T438K 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-B0-4698-01 5 140208296 140208296 C G PCDHA6 Missense_Mutation p.A207G 0.22 deleterious_low_confidence(0.01) benign(0.016) TCGA-B0-4698-01 5 140389839 140389839 C T PCDHAC1 3'UTR 0.15 TCGA-B0-4698-01 5 140475022 140475022 G T PCDHB2 Silent p.A216A 0.29 TCGA-B0-4698-01 5 140750160 140750160 C A PCDHGB3 Silent p.R67R 0.16 TCGA-B0-4698-01 5 141244188 141244188 G C PCDH1 Missense_Mutation p.L570V 0.46 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 5 1422107 1422107 G A SLC6A3 Nonsense_Mutation p.Q226* 0.22 TCGA-B0-4698-01 5 147028031 147028031 G A JAKMIP2 Nonsense_Mutation p.R282* 0.15 TCGA-B0-4698-01 5 149206326 149206326 G T PPARGC1B Missense_Mutation p.A115S 0.33 tolerated(0.28) benign(0.007) TCGA-B0-4698-01 5 149428220 149428220 G T HMGXB3 Missense_Mutation p.G1058V 0.30 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 5 149677911 149677911 G C ARSI Missense_Mutation p.D192E 0.17 deleterious(0) probably_damaging(0.976) TCGA-B0-4698-01 5 156479626 156479626 G A HAVCR1 Missense_Mutation p.T140I 0.33 tolerated(0.19) unknown(0) TCGA-B0-4698-01 5 156590476 156590476 C A FAM71B Missense_Mutation p.G267V 0.33 tolerated(0.16) benign(0.024) TCGA-B0-4698-01 5 156590477 156590477 C A FAM71B Missense_Mutation p.G267C 0.30 deleterious(0.02) possibly_damaging(0.781) TCGA-B0-4698-01 5 160049495 160049495 G T ATP10B Missense_Mutation p.S573Y 0.28 tolerated(0.55) possibly_damaging(0.548) TCGA-B0-4698-01 5 161324184 161324184 C - GABRA1 Frame_Shift_Del p.P377Lfs*10 0.17 TCGA-B0-4698-01 5 167303106 167303106 C G TENM2 Silent p.S206S 0.13 TCGA-B0-4698-01 5 17354020 17354020 C A CTD-2139B15.2 RNA 0.26 TCGA-B0-4698-01 5 17354164 17354164 C - CTD-2139B15.2 Intron 0.25 TCGA-B0-4698-01 5 175530289 175530289 G C FAM153B Missense_Mutation p.E165Q 0.13 tolerated_low_confidence(0.16) possibly_damaging(0.888) TCGA-B0-4698-01 5 176026562 176026562 C A GPRIN1 Missense_Mutation p.A92S 0.19 deleterious(0.03) benign(0.136) TCGA-B0-4698-01 5 177161875 177161875 C G FAM153A Missense_Mutation p.E165Q 0.21 tolerated_low_confidence(0.16) possibly_damaging(0.798) TCGA-B0-4698-01 5 180335873 180335873 G T BTNL8 Missense_Mutation p.G113W 0.11 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 5 21751955 21751955 G T CDH12 Missense_Mutation p.T759K 0.28 tolerated(0.06) possibly_damaging(0.589) TCGA-B0-4698-01 5 23522810 23522810 G T PRDM9 Missense_Mutation p.G233V 0.36 deleterious(0.04) possibly_damaging(0.824) TCGA-B0-4698-01 5 26988480 26988480 T A CDH9 5'UTR 0.22 TCGA-B0-4698-01 5 38407987 38407987 C A EGFLAM Missense_Mutation p.Q410K 0.12 deleterious(0.02) possibly_damaging(0.507) TCGA-B0-4698-01 5 5237123 5237123 G C ADAMTS16 Missense_Mutation p.D689H 0.23 deleterious(0) probably_damaging(0.99) TCGA-B0-4698-01 5 54275222 54275222 C G ESM1 Missense_Mutation p.E165Q 0.10 tolerated(0.21) benign(0.025) TCGA-B0-4698-01 5 54442585 54442585 T G CDC20B Silent p.R76R 0.26 TCGA-B0-4698-01 5 55412459 55412459 G A ANKRD55 Silent p.L316L 0.15 TCGA-B0-4698-01 5 70837402 70837402 T G BDP1 Silent p.T2048T 0.24 TCGA-B0-4698-01 5 73166019 73166019 C G ARHGEF28 Missense_Mutation p.Q851E 0.16 deleterious(0) probably_damaging(0.998) TCGA-B0-4698-01 5 75967644 75967644 C A IQGAP2 Silent p.V968V 0.14 TCGA-B0-4698-01 5 76129478 76129478 A T F2RL1 Missense_Mutation p.H349L 0.07 deleterious(0.01) benign(0) TCGA-B0-4698-01 5 76330247 76330247 A T AGGF1 Missense_Mutation p.E72V 0.25 deleterious(0) probably_damaging(0.921) TCGA-B0-4698-01 6 102250295 102250295 G T GRIK2 Missense_Mutation p.K395N 0.14 tolerated(0.12) benign(0.049) TCGA-B0-4698-01 6 111913259 111913259 C G TRAF3IP2 Missense_Mutation p.E11Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 6 112438996 112438996 C T LAMA4 Missense_Mutation p.G1643S 0.15 deleterious(0.01) probably_damaging(1) TCGA-B0-4698-01 6 116818094 116818094 C A TRAPPC3L 3'UTR 0.17 TCGA-B0-4698-01 6 123100926 123100926 G C FABP7 5'UTR 0.19 TCGA-B0-4698-01 6 128134640 128134640 G T THEMIS Silent p.S382S 0.21 TCGA-B0-4698-01 6 132054776 132054776 G T ENPP3 Missense_Mutation p.D668Y 0.17 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 6 143095101 143095101 C A HIVEP2 Missense_Mutation p.D259Y 0.23 deleterious(0) probably_damaging(0.926) TCGA-B0-4698-01 6 146121310 146121310 T C FBXO30 Missense_Mutation p.M724V 0.16 deleterious(0) probably_damaging(0.995) TCGA-B0-4698-01 6 147049727 147049727 G T ADGB Silent p.T790T 0.18 TCGA-B0-4698-01 6 154439821 154439821 G T OPRM1 Nonsense_Mutation p.E483* 0.20 TCGA-B0-4698-01 6 159621073 159621073 G A FNDC1 Missense_Mutation p.S117N 0.21 tolerated(1) unknown(0) TCGA-B0-4698-01 6 160453697 160453697 G T IGF2R Nonsense_Mutation p.E333* 0.12 TCGA-B0-4698-01 6 161071445 161071445 G T LPA Missense_Mutation p.T45K 0.15 tolerated(0.81) probably_damaging(0.996) TCGA-B0-4698-01 6 161155028 161155028 A G PLG Missense_Mutation p.Y530C 0.14 deleterious(0) benign(0.385) TCGA-B0-4698-01 6 161505609 161505609 T C MAP3K4 Missense_Mutation p.W778R 0.16 tolerated(0.17) benign(0.009) TCGA-B0-4698-01 6 167585711 167585711 G C TCP10L2 Missense_Mutation p.A27P 0.33 tolerated(0.17) possibly_damaging(0.836) TCGA-B0-4698-01 6 168272913 168272913 C A MLLT4 Missense_Mutation p.P145H 0.17 tolerated(0.11) probably_damaging(1) TCGA-B0-4698-01 6 27861469 27861469 G C HIST1H2BO Missense_Mutation p.E77Q 0.33 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-B0-4698-01 6 34826303 34826303 C T UHRF1BP1 Silent p.L724L 0.16 TCGA-B0-4698-01 6 37612350 37612350 C G MDGA1 Missense_Mutation p.R775P 0.34 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 6 38903469 38903469 A T DNAH8 Silent p.T3636T 0.32 TCGA-B0-4698-01 6 47649900 47649900 G T GPR111 Missense_Mutation p.W535C 0.40 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 6 70098844 70098844 G A BAI3 3'UTR 0.32 TCGA-B0-4698-01 6 7378939 7378939 T A CAGE1 Missense_Mutation p.M200L 0.39 deleterious(0.01) benign(0.002) TCGA-B0-4698-01 6 83075853 83075853 G T TPBG Missense_Mutation p.C392F 0.14 deleterious(0) probably_damaging(0.996) TCGA-B0-4698-01 6 85447007 85447007 C A TBX18 Missense_Mutation p.S407I 0.13 tolerated(0.28) benign(0.015) TCGA-B0-4698-01 6 88140841 88140841 G A C6ORF165 Missense_Mutation p.R417Q 0.18 tolerated(0.09) benign(0.041) TCGA-B0-4698-01 7 100677801 100677801 C A MUC17 Nonsense_Mutation p.S1035* 0.22 TCGA-B0-4698-01 7 100684045 100684045 G T MUC17 Silent p.P3116P 0.22 TCGA-B0-4698-01 7 100686018 100686018 C A MUC17 Missense_Mutation p.P3774H 0.14 benign(0.006) TCGA-B0-4698-01 7 101091004 101091004 C A COL26A1 Nonsense_Mutation p.Y107* 0.12 TCGA-B0-4698-01 7 102603983 102603983 C G FBXL13 Missense_Mutation p.V241L 0.16 deleterious(0.05) benign(0.026) TCGA-B0-4698-01 7 103123411 103123411 G T RELN Silent p.R3397R 0.12 TCGA-B0-4698-01 7 103159808 103159808 C A RELN Silent p.L2608L 0.24 TCGA-B0-4698-01 7 103183241 103183241 A T RELN Missense_Mutation p.L2203H 0.14 deleterious(0) probably_damaging(0.999) TCGA-B0-4698-01 7 103281044 103281044 G T RELN Missense_Mutation p.P672Q 0.14 tolerated(0.07) probably_damaging(0.999) TCGA-B0-4698-01 7 107600937 107600937 C A LAMB1 Missense_Mutation p.R756I 0.22 tolerated(0.2) possibly_damaging(0.62) TCGA-B0-4698-01 7 108204734 108204734 T G THAP5 Missense_Mutation p.E363D 0.19 deleterious(0) possibly_damaging(0.609) TCGA-B0-4698-01 7 111474698 111474698 T C DOCK4 Silent p.T927T 0.19 TCGA-B0-4698-01 7 121650616 121650616 C A PTPRZ1 Missense_Mutation p.P506T 0.16 tolerated(0.23) benign(0.002) TCGA-B0-4698-01 7 121650617 121650617 C A PTPRZ1 Missense_Mutation p.P506Q 0.16 tolerated(0.09) benign(0.004) TCGA-B0-4698-01 7 137567295 137567295 C T CREB3L2 Silent p.L450L 0.15 TCGA-B0-4698-01 7 137761194 137761194 G C AKR1D1 5'Flank 0.13 TCGA-B0-4698-01 7 137761195 137761195 G T AKR1D1 5'Flank 0.13 TCGA-B0-4698-01 7 141760120 141760120 G C MGAM Missense_Mutation p.D1357H 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-B0-4698-01 7 142139361 142139361 C A TRBV7-6 Missense_Mutation p.R88S 0.24 deleterious(0.04) possibly_damaging(0.908) TCGA-B0-4698-01 7 142423486 142423486 C A TRBV27 Missense_Mutation p.H48N 0.15 TCGA-B0-4698-01 7 142448604 142448604 G T TRBV29-1 Missense_Mutation p.Q66H 0.22 tolerated(0.14) benign(0.16) TCGA-B0-4698-01 7 142627501 142627501 C G TRPV5 Missense_Mutation p.D57H 0.12 deleterious(0) probably_damaging(0.97) TCGA-B0-4698-01 7 150171146 150171146 G A GIMAP8 Silent p.P243P 0.28 TCGA-B0-4698-01 7 151181829 151181829 G A RHEB Silent p.A62A 0.14 TCGA-B0-4698-01 7 154863176 154863176 C A HTR5A Missense_Mutation p.S189R 0.26 tolerated(0.54) benign(0.006) TCGA-B0-4698-01 7 156961756 156961756 G T UBE3C Missense_Mutation p.R45S 0.15 deleterious(0) probably_damaging(0.909) TCGA-B0-4698-01 7 26404703 26404703 C A SNX10 Missense_Mutation p.F83L 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-B0-4698-01 7 31378452 31378452 C T NEUROD6 Nonsense_Mutation p.W144* 0.19 TCGA-B0-4698-01 7 36338682 36338682 G T EEPD1 Missense_Mutation p.G526V 0.19 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 7 43548529 43548529 G T HECW1 Intron 0.20 TCGA-B0-4698-01 7 48626761 48626761 C A ABCA13 Missense_Mutation p.D4839E 0.19 benign(0.366) TCGA-B0-4698-01 7 48684267 48684267 G T ABCA13 Missense_Mutation p.A5000S 0.17 possibly_damaging(0.891) TCGA-B0-4698-01 7 54617741 54617741 A G VSTM2A Missense_Mutation p.K171R 0.08 tolerated(0.21) probably_damaging(0.993) TCGA-B0-4698-01 7 57187554 57187554 C A ZNF479 Missense_Mutation p.C523F 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-B0-4698-01 7 65150589 65150589 G A INTS4L2 RNA 0.15 TCGA-B0-4698-01 7 73097529 73097529 G T DNAJC30 Silent p.L75L 0.19 TCGA-B0-4698-01 7 79842084 79842084 G T GNAI1 Missense_Mutation p.W258L 0.21 deleterious(0) probably_damaging(0.923) TCGA-B0-4698-01 7 88963135 88963135 A G ZNF804B Missense_Mutation p.E280G 0.17 tolerated(0.65) benign(0) TCGA-B0-4698-01 8 105361247 105361247 C A DCSTAMP Missense_Mutation p.T156N 0.26 tolerated(0.23) benign(0.039) TCGA-B0-4698-01 8 110457250 110457250 G T PKHD1L1 Missense_Mutation p.A1718S 0.22 tolerated(0.49) benign(0) TCGA-B0-4698-01 8 117861192 117861192 C A RAD21 Missense_Mutation p.G566V 0.28 tolerated(0.42) probably_damaging(0.999) TCGA-B0-4698-01 8 117861193 117861193 C A RAD21 Missense_Mutation p.G566C 0.28 tolerated(0.08) probably_damaging(1) TCGA-B0-4698-01 8 118817036 118817036 C G EXT1 Silent p.L660L 0.34 TCGA-B0-4698-01 8 120569847 120569847 G T ENPP2 Missense_Mutation p.L888M 0.20 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 8 124096435 124096435 A C TBC1D31 Missense_Mutation p.H125P 0.28 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 8 139160829 139160829 G T FAM135B Missense_Mutation p.P1128T 0.21 tolerated(0.12) possibly_damaging(0.636) TCGA-B0-4698-01 8 139165024 139165024 C G FAM135B Missense_Mutation p.R565T 0.22 tolerated(0.07) benign(0.118) TCGA-B0-4698-01 8 143747298 143747298 C A JRK RNA 0.30 TCGA-B0-4698-01 8 2056620 2056620 C T MYOM2 Silent p.P1014P 0.24 TCGA-B0-4698-01 8 28420399 28420399 T C FZD3 Silent p.S624S 0.15 TCGA-B0-4698-01 8 3224667 3224667 C A CSMD1 Missense_Mutation p.G1001V 0.37 probably_damaging(1) TCGA-B0-4698-01 8 3224668 3224668 C A CSMD1 Missense_Mutation p.G1001W 0.36 probably_damaging(1) TCGA-B0-4698-01 8 32585559 32585559 G T NRG1 Missense_Mutation p.V199L 0.23 tolerated(0.27) benign(0.005) TCGA-B0-4698-01 8 37635496 37635496 A T PROSC Missense_Mutation p.E234D 0.35 deleterious(0.01) possibly_damaging(0.821) TCGA-B0-4698-01 8 65527706 65527706 G A CYP7B1 Missense_Mutation p.P312S 0.19 deleterious(0.01) probably_damaging(1) TCGA-B0-4698-01 8 77763271 77763271 G A ZFHX4 Missense_Mutation p.D1372N 0.10 possibly_damaging(0.741) TCGA-B0-4698-01 8 85441688 85441688 G A RALYL Silent p.K57K 0.21 TCGA-B0-4698-01 8 99039994 99039994 G T MATN2 Missense_Mutation p.V765L 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-B0-4698-01 9 107289432 107289432 T A OR13C4 Missense_Mutation p.Y20F 0.27 deleterious(0.02) possibly_damaging(0.697) TCGA-B0-4698-01 9 119770419 119770419 C A ASTN2 Nonsense_Mutation p.G464* 0.24 TCGA-B0-4698-01 9 123202123 123202123 G A CDK5RAP2 Silent p.V1092V 0.34 TCGA-B0-4698-01 9 125154730 125154730 C A PTGS1 Silent p.L569L 0.33 TCGA-B0-4698-01 9 138679996 138679996 G T KCNT1 Intron 0.23 TCGA-B0-4698-01 9 27190585 27190585 C A TEK Silent p.V462V 0.37 TCGA-B0-4698-01 9 32633625 32633625 A G TAF1L Silent p.G651G 0.21 TCGA-B0-4698-01 9 35562895 35562895 G A FAM166B Missense_Mutation p.P157S 0.06 tolerated(0.18) benign(0.027) TCGA-B0-4698-01 9 36197550 36197550 G A CLTA Missense_Mutation p.A74T 0.22 tolerated(0.55) benign(0.297) TCGA-B0-4698-01 9 73376556 73376556 C A TRPM3 Silent p.L411L 0.22 TCGA-B0-4698-01 9 95081633 95081633 G T NOL8 Missense_Mutation p.A96D 0.11 deleterious(0) probably_damaging(0.95) TCGA-B0-4698-01 9 99522564 99522564 A C ZNF510 Missense_Mutation p.L183W 0.23 deleterious(0) possibly_damaging(0.819) TCGA-B0-4698-01 X 102508682 102508682 T C TCEAL8 Missense_Mutation p.I76V 0.53 tolerated(0.17) benign(0.013) TCGA-B0-4698-01 X 105450674 105450674 G A MUM1L1 Missense_Mutation p.E417K 0.46 deleterious(0) probably_damaging(0.911) TCGA-B0-4698-01 X 12938651 12938651 C T TLR8 Missense_Mutation p.P498S 0.52 tolerated(0.22) benign(0.091) TCGA-B0-4698-01 X 129799725 129799725 T A ENOX2 Splice_Site p.X332_splice 0.43 TCGA-B0-4698-01 X 130215563 130215563 C T ARHGAP36 5'UTR 0.56 TCGA-B0-4698-01 X 134989103 134989103 A T SAGE1 Missense_Mutation p.N252I 0.53 deleterious(0) probably_damaging(0.991) TCGA-B0-4698-01 X 13726867 13726867 T G RAB9A Translation_Start_Site p.M1? 0.47 deleterious(0) probably_damaging(0.993) TCGA-B0-4698-01 X 137791083 137791083 C G FGF13 Missense_Mutation p.Q75H 0.40 tolerated(0.15) probably_damaging(0.929) TCGA-B0-4698-01 X 138697065 138697065 C - MCF2 Frame_Shift_Del p.T507Hfs*36 0.46 TCGA-B0-4698-01 X 140785571 140785571 G A SPANXD 3'UTR 0.54 TCGA-B0-4698-01 X 142122025 142122025 A G SPANXN4 Missense_Mutation p.Q98R 0.53 deleterious_low_confidence(0.01) benign(0) TCGA-B0-4698-01 X 15657735 15657735 G C TMEM27 Missense_Mutation p.I154M 0.44 deleterious(0) benign(0.33) TCGA-B0-4698-01 X 207367 207367 G T PLCXD1 Missense_Mutation p.R106L 0.18 deleterious(0) probably_damaging(0.972) TCGA-B0-4698-01 X 26212513 26212513 G T MAGEB6 Missense_Mutation p.A184S 0.68 tolerated(0.87) benign(0.046) TCGA-B0-4698-01 X 26213247 26213247 C T MAGEB6 3'UTR 0.56 TCGA-B0-4698-01 X 31792215 31792215 C A DMD Missense_Mutation p.E2468D 0.55 benign(0.388) TCGA-B0-4698-01 X 36403132 36403132 C T CXorf30 3'UTR 0.24 TCGA-B0-4698-01 X 37526672 37526672 G A LANCL3 Missense_Mutation p.G345S 0.40 deleterious(0) probably_damaging(1) TCGA-B0-4698-01 X 47836873 47836873 G A ZNF182 Missense_Mutation p.P205S 0.54 tolerated(0.35) benign(0.001) TCGA-B0-4698-01 X 48370757 48370757 C T PORCN Silent p.F139F 0.57 TCGA-B0-4698-01 X 48763735 48763735 G A SLC35A2 Silent p.L120L 0.41 TCGA-B0-4698-01 X 54784363 54784363 G T ITIH6 Missense_Mutation p.T715N 0.46 tolerated(0.11) benign(0.007) TCGA-B0-4698-01 X 78426708 78426708 A T GPR174 Missense_Mutation p.Q68H 0.49 tolerated(1) possibly_damaging(0.774) TCGA-B0-4698-01 X 78616943 78616943 G C ITM2A Missense_Mutation p.R196G 0.38 deleterious(0.04) possibly_damaging(0.45) TCGA-B0-4698-01 X 86880726 86880726 C T KLHL4 Silent p.S418S 0.56 TCGA-B0-4698-01 X 86924480 86924480 C A KLHL4 3'UTR 0.36 TCGA-B0-4698-01 X 96197063 96197063 C A DIAPH2 Missense_Mutation p.L458I 0.47 deleterious(0) unknown(0) TCGA-B0-4698-01 X 99662429 99662429 C T PCDH19 Silent p.L389L 0.08 TCGA-B0-4698-01 X 99943302 99943302 C T SYTL4 Intron 0.54 TCGA-B0-4700-01 10 89711905 89711905 G - PTEN Frame_Shift_Del p.V175Cfs*8 0.08 TCGA-B0-4700-01 11 5020987 5020987 G A OR51L1 Missense_Mutation p.G259R 0.10 deleterious(0) benign(0.367) TCGA-B0-4700-01 11 5878479 5878479 C T OR52E8 Missense_Mutation p.G152S 0.12 tolerated(0.47) benign(0.052) TCGA-B0-4700-01 11 63753931 63753931 G A OTUB1 Translation_Start_Site p.M1? 0.08 tolerated_low_confidence(0.07) benign(0.107) TCGA-B0-4700-01 12 1755046 1755046 C T WNT5B Silent p.A236A 0.21 TCGA-B0-4700-01 12 32490734 32490734 G A BICD1 Missense_Mutation p.G852S 0.11 tolerated_low_confidence(0.18) probably_damaging(0.994) TCGA-B0-4700-01 13 30098290 30098290 A G SLC7A1 Missense_Mutation p.F269L 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-B0-4700-01 13 39264232 39264232 A G FREM2 Silent p.E917E 0.08 TCGA-B0-4700-01 14 106667750 106667750 C T IGHV3-20 Missense_Mutation p.G61E 0.08 tolerated_low_confidence(0.08) possibly_damaging(0.648) TCGA-B0-4700-01 14 70252853 70252855 GAG - SLC10A1 In_Frame_Del p.L176del 0.13 TCGA-B0-4700-01 14 89038503 89038503 C A ZC3H14 Missense_Mutation p.A122E 0.05 deleterious(0.04) benign(0.106) TCGA-B0-4700-01 15 81440257 81440257 G A C15orf26 Missense_Mutation p.R232Q 0.06 tolerated(0.08) probably_damaging(1) TCGA-B0-4700-01 16 27367167 27367167 G A IL4R Missense_Mutation p.V237I 0.08 tolerated(0.08) benign(0.414) TCGA-B0-4700-01 16 28607132 28607132 G A SULT1A2 Silent p.D40D 0.11 TCGA-B0-4700-01 17 16946263 16946263 T C MPRIP Missense_Mutation p.L34P 0.08 deleterious(0) probably_damaging(0.999) TCGA-B0-4700-01 17 26874604 26874604 A G UNC119 Intron 0.12 TCGA-B0-4700-01 18 34376942 34376942 C G TPGS2 Silent p.V243V 0.04 TCGA-B0-4700-01 19 12296984 12296984 T G ZNF136 Missense_Mutation p.N62K 0.07 tolerated(0.88) benign(0.008) TCGA-B0-4700-01 1 154144565 154144565 C T TPM3 Intron 0.06 TCGA-B0-4700-01 1 186014973 186014973 C - HMCN1 Frame_Shift_Del p.S2153Lfs*7 0.14 TCGA-B0-4700-01 20 33596526 33596526 C G TRPC4AP Missense_Mutation p.R512S 0.07 tolerated(0.15) benign(0.253) TCGA-B0-4700-01 20 49576093 49576093 C T MOCS3 Silent p.N238N 0.19 TCGA-B0-4700-01 2 131486857 131486857 C T GPR148 Missense_Mutation p.P45S 0.10 tolerated(0.09) possibly_damaging(0.514) TCGA-B0-4700-01 2 179477756 179477756 G A TTN Silent p.G16564G 0.06 TCGA-B0-4700-01 2 203071957 203071957 A C SUMO1 3'UTR 0.11 TCGA-B0-4700-01 2 204001359 204001359 T - NBEAL1 Frame_Shift_Del p.L1448* 0.10 TCGA-B0-4700-01 2 238742986 238742986 C G RBM44 Missense_Mutation p.S1034C 0.06 deleterious(0) probably_damaging(0.992) TCGA-B0-4700-01 3 10188197 10188197 G T VHL Splice_Site p.X114_splice 0.09 TCGA-B0-4700-01 3 136062774 136062774 G A STAG1 Nonsense_Mutation p.Q1116* 0.09 TCGA-B0-4700-01 3 190936537 190936537 C A OSTN Missense_Mutation p.A35D 0.07 tolerated(0.27) benign(0.013) TCGA-B0-4700-01 5 134870643 134870643 A G NEUROG1 3'UTR 0.09 TCGA-B0-4700-01 5 177166139 177166139 C A FAM153A Splice_Site p.X103_splice 0.08 TCGA-B0-4700-01 5 37165653 37165653 A T C5orf42 Silent p.I2507I 0.06 TCGA-B0-4700-01 6 132910004 132910004 G T TAAR5 Silent p.V274V 0.11 TCGA-B0-4700-01 7 143633180 143633180 G A OR2F2 Silent p.L285L 0.09 TCGA-B0-4700-01 9 107332250 107332250 G T OR13C8 Missense_Mutation p.V268F 0.16 tolerated(0.19) benign(0.002) TCGA-B0-4700-01 X 118124435 118124435 C A LONRF3 Missense_Mutation p.P443T 0.05 tolerated(0.63) benign(0.097) TCGA-B0-4700-01 X 147014114 147014114 G T FMR1 Missense_Mutation p.E267D 0.13 deleterious(0.02) benign(0.414) TCGA-B0-4700-01 X 153296886 153296886 G C MECP2 Silent p.A143A 0.15 TCGA-B0-4700-01 X 17818567 17818567 G A RAI2 Missense_Mutation p.R522W 0.04 deleterious(0) unknown(0) TCGA-B0-4700-01 X 49072841 49072841 C T CACNA1F Splice_Site p.X1090_splice 0.16 TCGA-B0-4700-01 X 49958758 49958758 C G AKAP4 Missense_Mutation p.Q202H 0.06 deleterious(0.03) possibly_damaging(0.885) TCGA-B0-4706-01 10 104111129 104111129 C T GBF1 Nonsense_Mutation p.Q138* 0.33 TCGA-B0-4706-01 10 118084574 118084574 G A CCDC172 Silent p.A17A 0.04 TCGA-B0-4706-01 10 129911780 129911780 G C MKI67 Missense_Mutation p.P523A 0.29 deleterious(0) probably_damaging(0.998) TCGA-B0-4706-01 10 46961958 46961958 C G SYT15 3'UTR 0.16 TCGA-B0-4706-01 10 70748679 70748679 G A KIAA1279 Missense_Mutation p.E31K 0.38 deleterious(0.04) possibly_damaging(0.621) TCGA-B0-4706-01 10 72541707 72541707 T C TBATA Missense_Mutation p.I43V 0.27 tolerated_low_confidence(0.54) benign(0.06) TCGA-B0-4706-01 11 71735322 71735322 T C NUMA1 Missense_Mutation p.Q69R 0.25 benign(0.197) TCGA-B0-4706-01 12 10005690 10005690 G A CLEC2B 3'UTR 0.14 TCGA-B0-4706-01 12 32975511 32975511 C T PKP2 Missense_Mutation p.E621K 0.28 deleterious(0) possibly_damaging(0.682) TCGA-B0-4706-01 12 57554852 57554852 T C LRP1 Missense_Mutation p.F719S 0.32 benign(0.347) TCGA-B0-4706-01 13 42773767 42773767 C T DGKH Missense_Mutation p.S784L 0.24 deleterious(0) probably_damaging(0.995) TCGA-B0-4706-01 14 103193027 103193027 C T RCOR1 3'UTR 0.45 TCGA-B0-4706-01 14 99932102 99932102 G A SETD3 Missense_Mutation p.T14I 0.30 tolerated(0.13) benign(0.003) TCGA-B0-4706-01 15 43653850 43653850 A G ZSCAN29 Silent p.F660F 0.27 TCGA-B0-4706-01 15 76222396 76222396 T A FBXO22 Intron 0.30 TCGA-B0-4706-01 15 77059317 77059317 A G SCAPER Missense_Mutation p.I454T 0.29 deleterious(0) probably_damaging(0.948) TCGA-B0-4706-01 16 72033601 72033601 G C PKD1L3 RNA 0.28 TCGA-B0-4706-01 17 16721400 16721400 A G AC022596.6 RNA 0.21 TCGA-B0-4706-01 17 48452910 48452910 A - EME1 Frame_Shift_Del p.D114Afs*48 0.23 TCGA-B0-4706-01 19 3533336 3533336 G A FZR1 Silent p.K429K 0.27 TCGA-B0-4706-01 19 49869088 49869088 G T DKKL1 Missense_Mutation p.E121D 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.536) TCGA-B0-4706-01 19 51518692 51518692 C T KLK10 Missense_Mutation p.R220Q 0.31 tolerated(0.96) benign(0.003) TCGA-B0-4706-01 19 6374925 6374925 C A ALKBH7 Missense_Mutation p.R203S 0.08 deleterious(0) probably_damaging(0.99) TCGA-B0-4706-01 19 9089041 9089041 C A MUC16 Missense_Mutation p.S925I 0.30 unknown(0) TCGA-B0-4706-01 1 3545080 3545080 C T TPRG1L Silent p.L244L 0.34 TCGA-B0-4706-01 1 35580687 35580687 T A ZMYM1 Missense_Mutation p.S1086T 0.30 deleterious(0) possibly_damaging(0.664) TCGA-B0-4706-01 1 35580688 35580688 C T ZMYM1 Missense_Mutation p.S1086L 0.30 tolerated(0.09) benign(0.039) TCGA-B0-4706-01 20 37383750 37383750 A G ACTR5 Missense_Mutation p.N309S 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-B0-4706-01 20 5559074 5559074 T C GPCPD1 Missense_Mutation p.I219M 0.29 deleterious(0.01) possibly_damaging(0.871) TCGA-B0-4706-01 22 41832246 41832246 T - TOB2 3'UTR 0.10 TCGA-B0-4706-01 22 42607162 42607162 C T TCF20 Missense_Mutation p.D1384N 0.26 probably_damaging(0.971) TCGA-B0-4706-01 2 131520998 131520998 G A AMER3 Silent p.P451P 0.26 TCGA-B0-4706-01 2 183623959 183623959 T C DNAJC10 Silent p.H690H 0.43 TCGA-B0-4706-01 2 242741353 242741353 G T GAL3ST2 Missense_Mutation p.G93C 0.36 deleterious(0.01) probably_damaging(1) TCGA-B0-4706-01 2 54871514 54871514 A - SPTBN1 Frame_Shift_Del p.K1354Nfs*39 0.25 TCGA-B0-4706-01 2 95773989 95773989 C A MRPS5 Nonsense_Mutation p.E190* 0.33 TCGA-B0-4706-01 3 10191501 10191501 T A VHL Missense_Mutation p.V165D 0.45 deleterious(0) probably_damaging(0.977) TCGA-B0-4706-01 3 47108557 47108557 T A SETD2 Intron 0.40 TCGA-B0-4706-01 3 52598097 52598102 TAGCAG - PBRM1 Nonsense_Mutation p.S1255_K1257delins* 0.27 TCGA-B0-4706-01 4 106863727 106863727 C A NPNT Missense_Mutation p.P373T 0.31 tolerated(0.16) possibly_damaging(0.756) TCGA-B0-4706-01 4 155156296 155156296 C G DCHS2 Missense_Mutation p.G2715R 0.29 tolerated(0.05) benign(0.086) TCGA-B0-4706-01 4 174298500 174298500 T A SAP30 3'UTR 0.29 TCGA-B0-4706-01 4 17826669 17826670 AA - NCAPG Frame_Shift_Del p.K488Rfs*6 0.28 TCGA-B0-4706-01 5 173426713 173426713 G - C5orf47 Frame_Shift_Del p.W141* 0.23 TCGA-B0-4706-01 5 179221063 179221063 C T LTC4S 5'UTR 0.35 TCGA-B0-4706-01 5 41012760 41012760 G C MROH2B Missense_Mutation p.N1020K 0.31 deleterious(0) benign(0.026) TCGA-B0-4706-01 5 75866461 75866461 G T IQGAP2 Missense_Mutation p.M120I 0.27 tolerated(0.21) possibly_damaging(0.522) TCGA-B0-4706-01 6 111213609 111213609 A G AMD1 Missense_Mutation p.Y193C 0.06 tolerated(0.17) benign(0.035) TCGA-B0-4706-01 6 152783703 152783703 T G SYNE1 Intron 0.24 TCGA-B0-4706-01 6 32084267 32084267 C T ATF6B Missense_Mutation p.M624I 0.38 tolerated(0.09) probably_damaging(0.989) TCGA-B0-4706-01 6 56484736 56484736 G A DST Intron 0.03 TCGA-B0-4706-01 6 70637906 70637906 C A COL19A1 Missense_Mutation p.N124K 0.37 deleterious(0.01) unknown(0) TCGA-B0-4706-01 6 86303401 86303401 C T SNX14 Silent p.L12L 0.60 TCGA-B0-4706-01 7 117417736 117417736 A T CTTNBP2 Silent p.A869A 0.30 TCGA-B0-4706-01 7 83021907 83021907 C A SEMA3E Missense_Mutation p.C544F 0.33 deleterious(0) probably_damaging(0.999) TCGA-B0-4706-01 8 17513562 17513562 G A MTUS1 Missense_Mutation p.T973I 0.05 deleterious(0) probably_damaging(0.915) TCGA-B0-4706-01 9 12698513 12698513 C T TYRP1 Silent p.V257V 0.36 TCGA-B0-4706-01 9 139849846 139849846 T C LCN12 Missense_Mutation p.C192R 0.30 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-B0-4706-01 9 140147247 140147247 G A C9orf173 Missense_Mutation p.G209D 0.31 tolerated(0.07) probably_damaging(0.982) TCGA-B0-4706-01 9 27297126 27297126 C T EQTN 5'UTR 0.28 TCGA-B0-4706-01 X 30260747 30260747 C G MAGEB4 Silent p.A165A 0.60 TCGA-B0-4706-01 Y 2829144 2829144 C T ZFY Nonsense_Mutation p.Q31* 0.63 TCGA-B0-4710-01 10 23321851 23321851 G C ARMC3 Missense_Mutation p.E770Q 0.17 tolerated(0.05) probably_damaging(1) TCGA-B0-4710-01 10 45499247 45499247 G T ZNF22 Missense_Mutation p.C144F 0.43 deleterious(0) probably_damaging(0.998) TCGA-B0-4710-01 10 5541024 5541024 G A CALML5 Silent p.A126A 0.62 TCGA-B0-4710-01 10 73442209 73442209 C T CDH23 Silent p.S214S 0.08 TCGA-B0-4710-01 10 73912709 73912709 C A ASCC1 Missense_Mutation p.A250S 0.17 tolerated(0.5) benign(0.021) TCGA-B0-4710-01 11 118635936 118635937 - A DDX6 Frame_Shift_Ins p.M210Nfs*4 0.26 TCGA-B0-4710-01 11 45671655 45671655 G - CHST1 Frame_Shift_Del p.T274Rfs*37 0.45 TCGA-B0-4710-01 11 56020415 56020415 C A OR5T3 Missense_Mutation p.S247Y 0.34 deleterious(0) probably_damaging(0.986) TCGA-B0-4710-01 11 75439854 75439854 T C MOGAT2 Missense_Mutation p.F224L 0.32 deleterious(0.01) benign(0.443) TCGA-B0-4710-01 11 92714908 92714908 G C MTNR1B Silent p.L173L 0.36 TCGA-B0-4710-01 12 19436378 19436378 G C PLEKHA5 Missense_Mutation p.G493A 0.36 tolerated(1) benign(0.001) TCGA-B0-4710-01 12 72317051 72317051 A - TBC1D15 3'UTR 0.24 TCGA-B0-4710-01 12 73012774 73012774 C A TRHDE Missense_Mutation p.L764I 0.30 tolerated(0.09) benign(0.065) TCGA-B0-4710-01 12 85286086 85286086 A T SLC6A15 Intron 0.36 TCGA-B0-4710-01 12 86276190 86276190 A T NTS 3'UTR 0.36 TCGA-B0-4710-01 13 25266644 25266644 C T ATP12A Silent p.L388L 0.49 TCGA-B0-4710-01 14 105420074 105420074 C T AHNAK2 Missense_Mutation p.G572S 0.22 benign(0.333) TCGA-B0-4710-01 14 105618587 105618587 A G JAG2 Missense_Mutation p.V277A 0.11 deleterious(0.01) benign(0.42) TCGA-B0-4710-01 14 105684036 105684049 ATTGATCTTGCTGG - BRF1 Frame_Shift_Del p.S535Lfs*2 0.27 TCGA-B0-4710-01 14 24590696 24590697 - AC DCAF11 Frame_Shift_Ins p.S458Tfs*15 0.19 TCGA-B0-4710-01 15 50853749 50853749 T C TRPM7 3'UTR 0.08 TCGA-B0-4710-01 15 75134624 75134624 A - ULK3 Frame_Shift_Del p.Q81Sfs*41 0.34 TCGA-B0-4710-01 17 10596183 10596183 C G SCO1 Missense_Mutation p.D154H 0.26 deleterious(0.01) probably_damaging(0.928) TCGA-B0-4710-01 17 34857066 34857066 G T MYO19 Missense_Mutation p.P697Q 0.37 tolerated(0.55) benign(0.352) TCGA-B0-4710-01 17 39579887 39579887 G A KRT37 Intron 0.54 TCGA-B0-4710-01 17 42936450 42936450 T C EFTUD2 Missense_Mutation p.K654E 0.23 deleterious(0) probably_damaging(0.999) TCGA-B0-4710-01 17 7578211 7578211 C T TP53 Missense_Mutation p.R213Q 0.25 deleterious(0) probably_damaging(1) TCGA-B0-4710-01 17 76491993 76491993 C T DNAH17 Missense_Mutation p.R1942H 0.17 probably_damaging(0.998) TCGA-B0-4710-01 17 8638483 8638483 C A CCDC42 Missense_Mutation p.Q268H 0.25 deleterious(0.03) probably_damaging(0.991) TCGA-B0-4710-01 19 18286174 18286174 G A IFI30 Silent p.E123E 0.24 TCGA-B0-4710-01 19 19166161 19166161 G C ARMC6 Missense_Mutation p.E371Q 0.49 tolerated(0.24) benign(0.049) TCGA-B0-4710-01 19 30303636 30303636 G C CCNE1 Missense_Mutation p.A22P 0.27 tolerated(0.29) benign(0.004) TCGA-B0-4710-01 19 30303637 30303637 C T CCNE1 Missense_Mutation p.A22V 0.28 tolerated(0.23) benign(0.054) TCGA-B0-4710-01 19 38189521 38189521 G - ZNF607 Frame_Shift_Del p.P504Lfs*21 0.16 TCGA-B0-4710-01 19 43258383 43258383 T G PSG8 3'Flank 0.25 TCGA-B0-4710-01 19 43428847 43428847 C A PSG7 3'UTR 0.28 TCGA-B0-4710-01 19 44470618 44470618 A C ZNF221 Silent p.R322R 0.37 TCGA-B0-4710-01 19 50812921 50812921 C G MYH14 Silent p.T1995T 0.15 TCGA-B0-4710-01 19 55085835 55085835 C A LILRA2 Silent p.T46T 0.31 TCGA-B0-4710-01 19 55396904 55396904 C T FCAR Missense_Mutation p.R110W 0.32 deleterious(0) possibly_damaging(0.899) TCGA-B0-4710-01 19 56552314 56552314 C T NLRP5 Missense_Mutation p.T938M 0.38 deleterious(0.05) possibly_damaging(0.625) TCGA-B0-4710-01 19 994289 994289 C T WDR18 Silent p.I415I 0.35 TCGA-B0-4710-01 1 151400320 151400320 C T POGZ Missense_Mutation p.G353R 0.36 tolerated(0.17) benign(0.356) TCGA-B0-4710-01 1 155642422 155642422 A G YY1AP1 Missense_Mutation p.M309T 0.15 deleterious(0) benign(0.268) TCGA-B0-4710-01 1 156552877 156552877 C T TTC24 Silent p.S318S 0.45 TCGA-B0-4710-01 1 160171310 160171310 A G CASQ1 3'UTR 0.13 TCGA-B0-4710-01 1 20979188 20979188 C T DDOST Missense_Mutation p.D383N 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-B0-4710-01 1 216219777 216219777 G T USH2A Silent p.V2107V 0.17 TCGA-B0-4710-01 1 240370978 240370978 C A FMN2 Missense_Mutation p.P956T 0.23 unknown(0) TCGA-B0-4710-01 1 45471468 45471468 G T HECTD3 Missense_Mutation p.L645M 0.15 tolerated(0.15) probably_damaging(0.944) TCGA-B0-4710-01 1 45810498 45810498 G T TESK2 3'UTR 0.27 TCGA-B0-4710-01 1 53245564 53245564 C A ZYG11B Missense_Mutation p.L331M 0.23 deleterious(0) possibly_damaging(0.839) TCGA-B0-4710-01 1 74819043 74819043 T A FPGT-TNNI3K Silent p.T456T 0.42 TCGA-B0-4710-01 20 57599843 57599843 G T TUBB1 3'UTR 0.38 TCGA-B0-4710-01 20 9382178 9382178 A C PLCB4 Missense_Mutation p.N518H 0.29 deleterious(0.03) benign(0.296) TCGA-B0-4710-01 2 110922107 110922107 G - NPHP1 Frame_Shift_Del p.P310Lfs*6 0.22 TCGA-B0-4710-01 2 113736198 113736198 T A IL36G Intron 0.40 TCGA-B0-4710-01 2 158412667 158412667 A G ACVR1C Missense_Mutation p.V161A 0.37 tolerated(0.08) benign(0.001) TCGA-B0-4710-01 2 167055543 167055543 G T SCN9A Missense_Mutation p.S1858Y 0.36 deleterious(0) possibly_damaging(0.566) TCGA-B0-4710-01 2 168101957 168101957 G A XIRP2 Nonsense_Mutation p.W1352* 0.03 TCGA-B0-4710-01 2 1927018 1927018 A - MYT1L Frame_Shift_Del p.C175Vfs*6 0.23 TCGA-B0-4710-01 2 230675664 230675665 - T TRIP12 Frame_Shift_Ins p.M670Nfs*46 0.23 TCGA-B0-4710-01 2 56094158 56094166 ACAATATTC TTT EFEMP1 3'UTR 0.16 TCGA-B0-4710-01 2 99272830 99272830 G A MGAT4A Missense_Mutation p.S228F 0.33 deleterious(0.01) probably_damaging(0.948) TCGA-B0-4710-01 3 164793760 164793760 A C SI Missense_Mutation p.I14S 0.06 tolerated(0.18) probably_damaging(0.958) TCGA-B0-4710-01 3 47143045 47143045 A T SETD2 Missense_Mutation p.W1640R 0.41 deleterious(0) possibly_damaging(0.766) TCGA-B0-4710-01 3 67049417 67049417 C G KBTBD8 Missense_Mutation p.S10C 0.32 deleterious_low_confidence(0.04) benign(0.087) TCGA-B0-4710-01 3 67049444 67049444 C G KBTBD8 Missense_Mutation p.S19C 0.34 tolerated_low_confidence(0.22) benign(0) TCGA-B0-4710-01 3 67049590 67049590 C G KBTBD8 Missense_Mutation p.L68V 0.42 deleterious(0) probably_damaging(1) TCGA-B0-4710-01 3 71804019 71804019 G T GPR27 Silent p.L273L 0.28 TCGA-B0-4710-01 4 99955422 99955422 G T METAP1 Nonsense_Mutation p.E70* 0.51 TCGA-B0-4710-01 5 111310973 111310973 A - NREP Frame_Shift_Del p.C45Vfs*36 0.24 TCGA-B0-4710-01 5 145858117 145858117 A G TCERG1 Missense_Mutation p.M555V 0.04 tolerated(0.81) unknown(0) TCGA-B0-4710-01 5 35084671 35084671 A G PRLR Missense_Mutation p.Y92H 0.35 tolerated(1) benign(0.008) TCGA-B0-4710-01 5 89757120 89757120 A C MBLAC2 Missense_Mutation p.F235C 0.31 deleterious(0) probably_damaging(0.987) TCGA-B0-4710-01 6 10731090 10731090 A G TMEM14C 3'UTR 0.48 TCGA-B0-4710-01 6 153292194 153292194 G A FBXO5 3'UTR 0.18 TCGA-B0-4710-01 6 170866043 170866043 C T TBP 5'UTR 0.16 TCGA-B0-4710-01 6 34846156 34846156 C A TAF11 3'UTR 0.46 TCGA-B0-4710-01 6 35087006 35087006 A T TCP11 Silent p.I439I 0.38 TCGA-B0-4710-01 6 36569822 36569822 T A SRSF3 3'UTR 0.23 TCGA-B0-4710-01 6 45983269 45983269 G T CLIC5 Intron 0.18 TCGA-B0-4710-01 6 52764813 52764813 T C GSTA3 Silent p.L111L 0.16 TCGA-B0-4710-01 6 87795372 87795372 A T CGA 3'UTR 0.20 TCGA-B0-4710-01 6 94129154 94129154 T A EPHA7 5'UTR 0.34 TCGA-B0-4710-01 7 134853617 134853617 G T C7orf49 Missense_Mutation p.Q20K 0.33 tolerated(0.06) benign(0.154) TCGA-B0-4710-01 7 138265317 138265317 A C TRIM24 Missense_Mutation p.I866L 0.29 tolerated(0.42) benign(0.31) TCGA-B0-4710-01 7 40900017 40900017 A G SUGCT Missense_Mutation p.D452G 0.42 tolerated(0.38) benign(0.144) TCGA-B0-4710-01 7 48315960 48315961 - A ABCA13 Frame_Shift_Ins p.I2234Nfs*6 0.26 TCGA-B0-4710-01 7 76140064 76140064 G T UPK3B Missense_Mutation p.G32V 0.62 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-B0-4710-01 7 92136429 92136429 G C PEX1 Missense_Mutation p.S561C 0.31 deleterious(0.02) possibly_damaging(0.474) TCGA-B0-4710-01 7 99144587 99144587 A C FAM200A Missense_Mutation p.S482A 0.41 deleterious(0.03) possibly_damaging(0.773) TCGA-B0-4710-01 7 99144589 99144589 C T FAM200A Missense_Mutation p.S481N 0.41 deleterious(0.01) benign(0.009) TCGA-B0-4710-01 8 21926551 21926551 T C DMTN Missense_Mutation p.S92P 0.39 deleterious(0) possibly_damaging(0.899) TCGA-B0-4710-01 8 38175500 38175500 C A WHSC1L1 Intron 0.26 TCGA-B0-4710-01 9 104356590 104356590 C T PPP3R2 3'UTR 0.25 TCGA-B0-4710-01 9 114159361 114159361 C A KIAA0368 Missense_Mutation p.A1087S 0.25 tolerated(0.56) benign(0.108) TCGA-B0-4710-01 9 127298262 127298262 T - NR6A1 Frame_Shift_Del p.Q325Rfs*3 0.21 TCGA-B0-4710-01 9 96318810 96318810 C G FAM120A Missense_Mutation p.F807L 0.29 tolerated(0.13) benign(0.159) TCGA-B0-4710-01 X 100912452 100912452 G A ARMCX2 Silent p.P41P 0.31 TCGA-B0-4710-01 X 101098107 101098107 G A NXF5 5'UTR 0.29 TCGA-B0-4710-01 X 130409532 130409532 C T IGSF1 Missense_Mutation p.R1040H 0.03 tolerated(0.24) benign(0.112) TCGA-B0-4710-01 X 140996270 140996270 G C MAGEC1 Missense_Mutation p.G1027A 0.30 deleterious(0) unknown(0) TCGA-B0-4710-01 X 151092110 151092110 T C MAGEA4 5'UTR 0.08 TCGA-B0-4710-01 X 151130895 151130895 C A GABRE Missense_Mutation p.R188M 0.04 deleterious(0) probably_damaging(0.996) TCGA-B0-4710-01 X 151303633 151303633 G T MAGEA10 Missense_Mutation p.P154T 0.16 tolerated(0.11) possibly_damaging(0.832) TCGA-B0-4710-01 X 154194857 154194857 G A F8 Missense_Mutation p.S372F 0.16 deleterious(0.02) benign(0.288) TCGA-B0-4710-01 X 43571201 43571201 C T MAOA Missense_Mutation p.T130I 0.34 deleterious(0.04) benign(0.191) TCGA-B0-4710-01 X 70467240 70467240 G T ZMYM3 Missense_Mutation p.Q757K 0.35 tolerated(0.24) benign(0.112) TCGA-B0-4710-01 X 90691460 90691460 A C PABPC5 Missense_Mutation p.E295A 0.34 deleterious(0.03) benign(0.048) TCGA-B0-4710-01 X 96139817 96139817 A T RPA4 Nonsense_Mutation p.K170* 0.36 TCGA-B0-4712-01 10 116881513 116881513 G C ATRNL1 Missense_Mutation p.S143T 0.22 deleterious(0.01) benign(0.247) TCGA-B0-4712-01 10 124591749 124591749 T C CUZD1 3'UTR 0.20 TCGA-B0-4712-01 10 390776 390776 G T DIP2C Silent p.S1142S 0.21 TCGA-B0-4712-01 10 64913306 64913306 T - NRBF2 Frame_Shift_Del p.H64Qfs*2 0.30 TCGA-B0-4712-01 10 99344532 99344532 C T PI4K2A Silent p.V24V 0.25 TCGA-B0-4712-01 10 99683108 99683108 C A CRTAC1 Missense_Mutation p.W157C 0.26 deleterious(0) possibly_damaging(0.76) TCGA-B0-4712-01 11 114183068 114183068 G C NNMT Missense_Mutation p.E222Q 0.11 deleterious(0.04) benign(0.039) TCGA-B0-4712-01 11 20676549 20676549 T C SLC6A5 3'UTR 0.16 TCGA-B0-4712-01 11 22364813 22364813 C A SLC17A6 Missense_Mutation p.D120E 0.17 tolerated(0.07) benign(0.208) TCGA-B0-4712-01 11 4903717 4903717 C T OR51T1 Silent p.I223I 0.16 TCGA-B0-4712-01 11 58477555 58477555 C A GLYAT Missense_Mutation p.R192M 0.18 deleterious(0) probably_damaging(0.93) TCGA-B0-4712-01 11 60102420 60102420 G C MS4A6E Missense_Mutation p.V18L 0.15 tolerated(0.1) benign(0.026) TCGA-B0-4712-01 11 62362921 62362921 C T MTA2 Missense_Mutation p.S433N 0.36 tolerated(0.56) benign(0.046) TCGA-B0-4712-01 11 64435931 64435931 A G NRXN2 Missense_Mutation p.M448T 0.43 deleterious(0) benign(0.001) TCGA-B0-4712-01 12 100478292 100478292 T A UHRF1BP1L Missense_Mutation p.K417I 0.31 tolerated(0.07) benign(0.361) TCGA-B0-4712-01 12 100813894 100813894 C T SLC17A8 Missense_Mutation p.T576I 0.16 tolerated_low_confidence(0.24) benign(0.001) TCGA-B0-4712-01 12 104208888 104208888 A C NT5DC3 Missense_Mutation p.S74A 0.31 tolerated(0.24) benign(0.002) TCGA-B0-4712-01 12 122865038 122865038 G T CLIP1 5'UTR 0.34 TCGA-B0-4712-01 12 122865040 122865040 C A CLIP1 5'UTR 0.34 TCGA-B0-4712-01 12 123345881 123345881 G C HIP1R Silent p.T993T 0.21 TCGA-B0-4712-01 12 23696147 23696149 AAT - SOX5 In_Frame_Del p.I589_L590delinsM 0.16 TCGA-B0-4712-01 12 319083 319083 T C SLC6A12 Missense_Mutation p.K24E 0.34 tolerated(0.53) benign(0.002) TCGA-B0-4712-01 13 33684212 33684212 G T STARD13 Missense_Mutation p.P949T 0.14 deleterious(0) probably_damaging(0.942) TCGA-B0-4712-01 13 53231666 53231666 G C SUGT1 Splice_Site p.X33_splice 0.21 TCGA-B0-4712-01 13 99505670 99505670 A T DOCK9 Missense_Mutation p.M1313K 0.24 deleterious(0) possibly_damaging(0.772) TCGA-B0-4712-01 14 100809696 100809696 A G WARS Silent p.A285A 0.08 TCGA-B0-4712-01 14 106829744 106829744 C A IGHV4-34 Missense_Mutation p.W73C 0.16 deleterious(0) probably_damaging(0.994) TCGA-B0-4712-01 14 20296229 20296229 C A OR4N2 Missense_Mutation p.L208I 0.09 tolerated(0.1) possibly_damaging(0.517) TCGA-B0-4712-01 14 24610441 24610441 C T EMC9 Missense_Mutation p.A25T 0.11 tolerated(0.08) benign(0.052) TCGA-B0-4712-01 14 50779730 50779730 C T ATP5S 5'UTR 0.15 TCGA-B0-4712-01 14 55817459 55817459 G T FBXO34 Missense_Mutation p.K117N 0.22 deleterious(0) probably_damaging(0.999) TCGA-B0-4712-01 15 21071315 21071315 C T POTEB2 Missense_Mutation p.R99H 0.14 tolerated(0.12) benign(0.049) TCGA-B0-4712-01 15 41223809 41223809 G A DLL4 Missense_Mutation p.R168H 0.37 deleterious(0) probably_damaging(0.961) TCGA-B0-4712-01 15 41672330 41672330 G A NUSAP1 Silent p.E424E 0.06 TCGA-B0-4712-01 15 77348509 77348509 A T TSPAN3 Missense_Mutation p.L51H 0.07 deleterious(0) probably_damaging(0.976) TCGA-B0-4712-01 16 2112006 2112006 G T TSC2 Missense_Mutation p.R418S 0.15 deleterious(0) probably_damaging(0.999) TCGA-B0-4712-01 16 30006027 30006027 G A HIRIP3 Missense_Mutation p.R147W 0.14 deleterious(0.04) possibly_damaging(0.543) TCGA-B0-4712-01 16 48303949 48303949 C T LONP2 Silent p.A335A 0.07 TCGA-B0-4712-01 16 57065327 57065327 T G NLRC5 Missense_Mutation p.L810R 0.28 deleterious(0) possibly_damaging(0.899) TCGA-B0-4712-01 16 67029715 67029715 T C CES4A Silent p.A81A 0.34 TCGA-B0-4712-01 16 71780730 71780730 C G AP1G1 Intron 0.23 TCGA-B0-4712-01 16 97420 97421 CA - POLR3K 3'UTR 0.30 TCGA-B0-4712-01 17 39673181 39673181 T C KRT15 Missense_Mutation p.E206G 0.15 deleterious(0.01) probably_damaging(1) TCGA-B0-4712-01 17 42745374 42745374 T G C17orf104 Missense_Mutation p.S699A 0.23 tolerated(0.08) benign(0.384) TCGA-B0-4712-01 17 76157222 76157222 A T C17orf99 Missense_Mutation p.N86I 0.14 deleterious(0) probably_damaging(0.994) TCGA-B0-4712-01 17 7797756 7797756 G A CHD3 Missense_Mutation p.G426R 0.20 probably_damaging(0.956) TCGA-B0-4712-01 18 2538990 2538990 A T METTL4 3'UTR 0.42 TCGA-B0-4712-01 18 2891708 2891708 C G EMILIN2 Nonsense_Mutation p.S528* 0.11 TCGA-B0-4712-01 19 10257171 10257171 T G DNMT1 Missense_Mutation p.E917A 0.17 tolerated(0.1) benign(0.236) TCGA-B0-4712-01 19 14508936 14508937 - G CD97 Frame_Shift_Ins p.E295Gfs*13 0.08 TCGA-B0-4712-01 19 14758037 14758037 C T EMR3 Missense_Mutation p.V280M 0.19 tolerated(0.15) benign(0.009) TCGA-B0-4712-01 19 22170044 22170044 C G ZNF208 Missense_Mutation p.R67T 0.12 tolerated(0.09) possibly_damaging(0.782) TCGA-B0-4712-01 19 22574468 22574468 G A ZNF98 Silent p.C523C 0.22 TCGA-B0-4712-01 19 48954349 48954349 C T GRWD1 Missense_Mutation p.P295L 0.27 deleterious(0.02) benign(0.414) TCGA-B0-4712-01 19 50309986 50309986 C A AP2A1 Missense_Mutation p.L969M 0.20 tolerated(0.11) probably_damaging(0.963) TCGA-B0-4712-01 19 55177763 55177763 G A LILRB4 Missense_Mutation p.R316K 0.19 tolerated(1) benign(0) TCGA-B0-4712-01 19 58772269 58772269 T C ZNF544 Silent p.A99A 0.36 TCGA-B0-4712-01 19 8953327 8953327 T C MBD3L1 Intron 0.17 TCGA-B0-4712-01 1 110921782 110921782 A C SLC16A4 Silent p.T241T 0.17 TCGA-B0-4712-01 1 115151368 115151368 A G DENND2C Missense_Mutation p.L499P 0.12 deleterious(0) probably_damaging(0.91) TCGA-B0-4712-01 1 150312943 150312943 C T PRPF3 Silent p.L424L 0.34 TCGA-B0-4712-01 1 166833059 166833059 A T TADA1 Splice_Site p.X110_splice 0.33 TCGA-B0-4712-01 1 223718636 223718637 - C CAPN8 Frame_Shift_Ins p.A575Gfs*22 0.12 TCGA-B0-4712-01 1 231489083 231489083 A G SPRTN Silent p.K482K 0.19 TCGA-B0-4712-01 1 23696047 23696047 A G C1orf213 Missense_Mutation p.Y86C 0.11 tolerated_low_confidence(0.18) possibly_damaging(0.878) TCGA-B0-4712-01 1 242253369 242253369 G A PLD5 Silent p.G466G 0.11 TCGA-B0-4712-01 1 26646868 26646868 T A CD52 3'UTR 0.21 TCGA-B0-4712-01 1 26646869 26646869 C A CD52 3'UTR 0.21 TCGA-B0-4712-01 1 26646870 26646870 T C CD52 3'UTR 0.21 TCGA-B0-4712-01 1 28975159 28975159 T C RNU11 RNA 0.22 TCGA-B0-4712-01 1 32645838 32645838 C A TXLNA 5'UTR 0.10 TCGA-B0-4712-01 1 57395015 57395015 C A C8B 3'UTR 0.19 TCGA-B0-4712-01 1 75102000 75102000 G T C1orf173 Silent p.T189T 0.16 TCGA-B0-4712-01 1 86315055 86315055 C G COL24A1 Missense_Mutation p.R1112T 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-B0-4712-01 20 20493735 20493735 C A RALGAPA2 Silent p.L1426L 0.04 TCGA-B0-4712-01 20 3355713 3355713 C T C20orf194 Missense_Mutation p.D157N 0.09 tolerated(0.07) probably_damaging(0.969) TCGA-B0-4712-01 20 37202798 37202798 C A RALGAPB Missense_Mutation p.T1383K 0.04 tolerated(0.93) benign(0.046) TCGA-B0-4712-01 20 47601976 47601982 CAAGGTT - ARFGEF2 Frame_Shift_Del p.R702Tfs*4 0.24 TCGA-B0-4712-01 22 21192985 21192985 A C PI4KA Missense_Mutation p.F64C 0.17 tolerated(0.18) benign(0.289) TCGA-B0-4712-01 2 1546455 1546455 T C TPO 3'UTR 0.09 TCGA-B0-4712-01 2 166201197 166201197 G A SCN2A Missense_Mutation p.G899S 0.14 deleterious(0) probably_damaging(0.966) TCGA-B0-4712-01 2 170028541 170028541 T C LRP2 Silent p.S3749S 0.29 TCGA-B0-4712-01 2 179575503 179575503 C T TTN Missense_Mutation p.G9441R 0.16 TCGA-B0-4712-01 2 197090523 197090523 C A HECW2 Missense_Mutation p.R1330L 0.04 deleterious(0.01) possibly_damaging(0.864) TCGA-B0-4712-01 2 198368149 198368149 C T HSPE1 3'UTR 0.07 TCGA-B0-4712-01 2 202025389 202025389 A G CFLAR Missense_Mutation p.D343G 0.16 deleterious(0) probably_damaging(0.998) TCGA-B0-4712-01 2 232322358 232322358 C G NCL Missense_Mutation p.W481C 0.12 possibly_damaging(0.865) TCGA-B0-4712-01 2 27001276 27001276 G A SLC35F6 Missense_Mutation p.R338H 0.15 tolerated(0.14) benign(0.001) TCGA-B0-4712-01 2 39088979 39088979 C A DHX57 Missense_Mutation p.R191S 0.24 tolerated(0.43) possibly_damaging(0.905) TCGA-B0-4712-01 2 48036736 48036736 T C FBXO11 Intron 0.19 TCGA-B0-4712-01 2 62450134 62450134 A G B3GNT2 Missense_Mutation p.N260S 0.11 tolerated(0.53) benign(0.06) TCGA-B0-4712-01 3 10191570 10191570 T G VHL Missense_Mutation p.L188R 0.42 deleterious(0) probably_damaging(0.999) TCGA-B0-4712-01 3 113022837 113022837 T G WDR52 Missense_Mutation p.K1668T 0.16 tolerated(0.06) possibly_damaging(0.459) TCGA-B0-4712-01 3 121305227 121305227 C G ARGFX Missense_Mutation p.S243C 0.29 tolerated(0.07) benign(0.371) TCGA-B0-4712-01 3 121412704 121412704 A G GOLGB1 Silent p.D2222D 0.31 TCGA-B0-4712-01 3 121613330 121613330 C G SLC15A2 Missense_Mutation p.P3A 0.09 tolerated_low_confidence(0.23) benign(0.001) TCGA-B0-4712-01 3 123418999 123418999 C T MYLK Missense_Mutation p.D1106N 0.12 deleterious(0.02) benign(0.288) TCGA-B0-4712-01 3 130380932 130380932 C G COL6A6 Missense_Mutation p.S2094R 0.30 tolerated(0.1) possibly_damaging(0.674) TCGA-B0-4712-01 3 130720168 130720168 A G ATP2C1 Intron 0.03 TCGA-B0-4712-01 3 151056476 151056476 A G P2RY12 Missense_Mutation p.I53T 0.15 deleterious(0) probably_damaging(0.982) TCGA-B0-4712-01 3 188933093 188933093 G A TPRG1 Missense_Mutation p.E75K 0.06 deleterious(0) benign(0.263) TCGA-B0-4712-01 3 47165360 47165360 G A SETD2 Nonsense_Mutation p.Q256* 0.43 TCGA-B0-4712-01 3 47165361 47165361 C G SETD2 Missense_Mutation p.K255N 0.43 deleterious_low_confidence(0) possibly_damaging(0.511) TCGA-B0-4712-01 3 52676060 52676065 TACTAC ACTAT PBRM1 Splice_Site p.X332_splice 0.28 TCGA-B0-4712-01 3 9868880 9868880 T C TTLL3 Silent p.Y501Y 0.46 TCGA-B0-4712-01 4 48525026 48525026 G C FRYL Missense_Mutation p.C2471W 0.23 tolerated(0.09) benign(0.104) TCGA-B0-4712-01 4 55973949 55973949 A C KDR Missense_Mutation p.I456S 0.12 deleterious(0.03) possibly_damaging(0.882) TCGA-B0-4712-01 4 57797456 57797456 C T REST Missense_Mutation p.S811F 0.16 deleterious_low_confidence(0) benign(0.187) TCGA-B0-4712-01 4 8288470 8288470 A G HTRA3 Missense_Mutation p.D223G 0.21 deleterious(0) benign(0.042) TCGA-B0-4712-01 4 99355174 99355174 G A RAP1GDS1 Missense_Mutation p.A511T 0.21 deleterious(0) possibly_damaging(0.856) TCGA-B0-4712-01 4 99355175 99355175 C G RAP1GDS1 Missense_Mutation p.A511G 0.21 deleterious(0) benign(0.195) TCGA-B0-4712-01 5 129520692 129520692 G C CHSY3 Missense_Mutation p.K619N 0.13 deleterious(0.01) possibly_damaging(0.568) TCGA-B0-4712-01 5 131042127 131042127 C G FNIP1 Missense_Mutation p.L297F 0.13 tolerated(0.06) probably_damaging(0.999) TCGA-B0-4712-01 5 141337480 141337480 C T PCDH12 5'UTR 0.23 TCGA-B0-4712-01 5 149449864 149449864 G T CSF1R Nonsense_Mutation p.Y400* 0.13 TCGA-B0-4712-01 5 176636690 176636690 G A NSD1 Silent p.Q430Q 0.17 TCGA-B0-4712-01 5 72864335 72864335 G A UTP15 Missense_Mutation p.G92S 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-B0-4712-01 7 106799894 106799894 C G PRKAR2B Missense_Mutation p.A375G 0.31 deleterious(0.03) benign(0.003) TCGA-B0-4712-01 7 120595997 120595997 T - ING3 Intron 0.12 TCGA-B0-4712-01 7 127669258 127669258 G A LRRC4 Missense_Mutation p.T479M 0.15 deleterious(0.03) benign(0.416) TCGA-B0-4712-01 7 128607436 128607436 C A TNPO3 Missense_Mutation p.R870L 0.12 tolerated(0.37) benign(0.019) TCGA-B0-4712-01 7 24839885 24839885 C - OSBPL3 Frame_Shift_Del p.D861Tfs*4 0.24 TCGA-B0-4712-01 7 42974658 42974658 G A MRPL32 Missense_Mutation p.A79T 0.31 deleterious(0) probably_damaging(0.999) TCGA-B0-4712-01 7 56022934 56022934 T A MRPS17 3'UTR 0.23 TCGA-B0-4712-01 8 120814248 120814248 A G TAF2 Missense_Mutation p.V193A 0.10 deleterious(0) possibly_damaging(0.808) TCGA-B0-4712-01 8 139824101 139824101 C T COL22A1 Missense_Mutation p.G464S 0.15 unknown(0) TCGA-B0-4712-01 8 3253877 3253877 G A CSMD1 Missense_Mutation p.T811I 0.43 benign(0.011) TCGA-B0-4712-01 8 33356790 33356790 G C TTI2 Silent p.L476L 0.04 TCGA-B0-4712-01 8 70978469 70978469 C A PRDM14 Splice_Site p.X395_splice 0.16 TCGA-B0-4712-01 9 106864804 106864804 C A SMC2 Missense_Mutation p.L324M 0.20 tolerated(0.09) benign(0.201) TCGA-B0-4712-01 9 123205921 123205921 T A CDK5RAP2 Missense_Mutation p.D1042V 0.45 deleterious(0.02) probably_damaging(0.937) TCGA-B0-4712-01 9 15724841 15724841 G A CCDC171 Missense_Mutation p.R520Q 0.14 tolerated(0.08) probably_damaging(0.965) TCGA-B0-4712-01 9 6252967 6252967 G C IL33 Missense_Mutation p.D149H 0.18 deleterious(0) probably_damaging(0.98) TCGA-B0-4712-01 X 64717061 64717061 G C ZC3H12B Missense_Mutation p.D220H 0.04 deleterious(0) possibly_damaging(0.629) TCGA-B0-4712-01 X 72673463 72673463 G A CDX4 Missense_Mutation p.E205K 0.16 deleterious(0.02) benign(0.114) TCGA-B0-4712-01 Y 15409556 15409556 A T UTY Intron 0.41 TCGA-B0-4810-01 10 5789390 5789390 G T FAM208B Nonsense_Mutation p.E1336* 0.19 TCGA-B0-4810-01 10 89725043 89725043 G A PTEN Splice_Site p.X343_splice 0.05 TCGA-B0-4810-01 11 32635626 32635626 T G CCDC73 Missense_Mutation p.K746N 0.21 tolerated(0.13) benign(0.104) TCGA-B0-4810-01 11 55432900 55432900 G T OR4C6 Missense_Mutation p.K86N 0.23 deleterious_low_confidence(0.02) benign(0.002) TCGA-B0-4810-01 11 64527310 64527310 C T PYGM Missense_Mutation p.G21S 0.29 tolerated(0.09) probably_damaging(0.993) TCGA-B0-4810-01 11 68216349 68216349 C T LRP5 Silent p.S1553S 0.27 TCGA-B0-4810-01 12 109182632 109182632 T C SSH1 Missense_Mutation p.H761R 0.05 deleterious_low_confidence(0.01) benign(0.295) TCGA-B0-4810-01 12 11420779 11420779 G A PRB3 Missense_Mutation p.P135L 0.20 deleterious(0.04) unknown(0) TCGA-B0-4810-01 12 117728169 117728169 G T NOS1 Missense_Mutation p.F305L 0.18 tolerated(0.09) benign(0.128) TCGA-B0-4810-01 12 31540556 31540556 A T DENND5B Missense_Mutation p.I1269N 0.19 deleterious(0.01) benign(0.258) TCGA-B0-4810-01 12 42864091 42864091 C G PRICKLE1 Missense_Mutation p.R68P 0.23 deleterious(0) probably_damaging(0.991) TCGA-B0-4810-01 13 21562394 21562394 G A LATS2 Missense_Mutation p.P509S 0.36 tolerated_low_confidence(0.12) benign(0.002) TCGA-B0-4810-01 13 26125480 26125480 C A ATP8A2 Nonsense_Mutation p.S299* 0.07 TCGA-B0-4810-01 13 48651403 48651403 T C MED4 Missense_Mutation p.M229V 0.25 tolerated(0.28) benign(0) TCGA-B0-4810-01 14 24885224 24885224 C T NYNRIN Silent p.S1423S 0.06 TCGA-B0-4810-01 14 32560363 32560363 T G ARHGAP5 Missense_Mutation p.I163S 0.30 deleterious(0) probably_damaging(0.969) TCGA-B0-4810-01 14 47613333 47613333 A T MDGA2 Nonsense_Mutation p.L247* 0.24 TCGA-B0-4810-01 14 55531522 55531522 A G MAPK1IP1L 3'UTR 0.40 TCGA-B0-4810-01 16 24918068 24918068 T C SLC5A11 Missense_Mutation p.L366P 0.25 tolerated(0.08) benign(0.208) TCGA-B0-4810-01 16 67264547 67264547 G T FHOD1 Missense_Mutation p.R939S 0.27 deleterious(0) probably_damaging(0.993) TCGA-B0-4810-01 17 18250958 18250958 T A SHMT1 Missense_Mutation p.N124I 0.30 deleterious(0) probably_damaging(1) TCGA-B0-4810-01 17 37922527 37922527 G A IKZF3 Missense_Mutation p.A349V 0.04 tolerated(0.16) benign(0.019) TCGA-B0-4810-01 17 42335974 42335974 G - SLC4A1 Frame_Shift_Del p.Y299Tfs*13 0.27 TCGA-B0-4810-01 17 5462474 5462474 C T NLRP1 Nonsense_Mutation p.W514* 0.21 TCGA-B0-4810-01 17 56247641 56247641 G A OR4D2 Missense_Mutation p.V209I 0.26 tolerated(0.98) benign(0.004) TCGA-B0-4810-01 17 61775579 61775579 T C LIMD2 3'UTR 0.24 TCGA-B0-4810-01 17 71412023 71412023 G A SDK2 Silent p.I765I 0.06 TCGA-B0-4810-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.06 deleterious(0) probably_damaging(0.992) TCGA-B0-4810-01 17 7983835 7983835 G A AC129492.6 3'UTR 0.29 TCGA-B0-4810-01 18 52937099 52937099 G A TCF4 Silent p.S397S 0.22 TCGA-B0-4810-01 19 15198934 15198934 A G OR1I1 Missense_Mutation p.D353G 0.08 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-B0-4810-01 19 15465831 15465831 T C AKAP8 Silent p.A658A 0.24 TCGA-B0-4810-01 19 18278085 18278085 C A PIK3R2 Missense_Mutation p.Q569K 0.24 deleterious(0.01) benign(0.034) TCGA-B0-4810-01 19 49121088 49121088 T G RPL18 Missense_Mutation p.E17A 0.18 tolerated(0.87) benign(0.17) TCGA-B0-4810-01 19 57922632 57922632 C T ZNF17 5'UTR 0.33 TCGA-B0-4810-01 19 9085732 9085732 G A MUC16 Missense_Mutation p.S2028F 0.17 unknown(0) TCGA-B0-4810-01 1 103468818 103468818 G A COL11A1 Nonsense_Mutation p.R651* 0.21 TCGA-B0-4810-01 1 11184589 11184589 C G MTOR Missense_Mutation p.A2210P 0.23 tolerated(0.25) possibly_damaging(0.611) TCGA-B0-4810-01 1 145440928 145440928 C G TXNIP Missense_Mutation p.P339A 0.04 tolerated(0.06) benign(0.018) TCGA-B0-4810-01 1 3322142 3322142 G A PRDM16 Silent p.G372G 0.12 TCGA-B0-4810-01 1 3669160 3669160 C A CCDC27 Missense_Mutation p.L39I 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.567) TCGA-B0-4810-01 22 19956115 19956115 A G COMT Silent p.P224P 0.27 TCGA-B0-4810-01 22 38884154 38884154 G A DDX17 Intron 0.21 TCGA-B0-4810-01 22 41632577 41632577 C T CHADL Silent p.L658L 0.27 TCGA-B0-4810-01 2 135107382 135107382 G A MGAT5 Missense_Mutation p.M373I 0.24 tolerated(0.25) benign(0.084) TCGA-B0-4810-01 2 141135789 141135789 C A LRP1B Missense_Mutation p.W3533L 0.23 possibly_damaging(0.637) TCGA-B0-4810-01 2 16742257 16742257 C T FAM49A Splice_Site p.X237_splice 0.26 TCGA-B0-4810-01 2 201721415 201721415 T C CLK1 Silent p.E391E 0.20 TCGA-B0-4810-01 2 203157832 203157832 T C NOP58 Intron 0.21 TCGA-B0-4810-01 2 68623036 68623036 G T PLEK 3'UTR 0.22 TCGA-B0-4810-01 3 10188224 10188224 G - VHL Frame_Shift_Del p.T124Hfs*35 0.23 TCGA-B0-4810-01 3 142740327 142740327 A T U2SURP Missense_Mutation p.Y261F 0.05 tolerated(0.65) benign(0.333) TCGA-B0-4810-01 3 167413409 167413409 T G PDCD10 Silent p.R124R 0.03 TCGA-B0-4810-01 3 172607298 172607298 G A SPATA16 3'UTR 0.25 TCGA-B0-4810-01 3 42781196 42781196 G T CCDC13 Missense_Mutation p.T365N 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-B0-4810-01 3 51749554 51749555 TT - GRM2 Frame_Shift_Del p.F589Cfs*197 0.41 TCGA-B0-4810-01 4 103971409 103971409 A G SLC9B2 Silent p.G191G 0.15 TCGA-B0-4810-01 4 125590855 125590855 T C ANKRD50 Missense_Mutation p.R1193G 0.28 tolerated(0.34) benign(0.001) TCGA-B0-4810-01 4 170510619 170510619 C T NEK1 Missense_Mutation p.G148E 0.21 deleterious(0) probably_damaging(1) TCGA-B0-4810-01 4 25418164 25418164 A - ANAPC4 Frame_Shift_Del p.V674Yfs*20 0.20 TCGA-B0-4810-01 4 77003637 77003637 C T ART3 Missense_Mutation p.L244F 0.26 deleterious(0.04) probably_damaging(0.914) TCGA-B0-4810-01 4 79831928 79831928 G T BMP2K Missense_Mutation p.D743Y 0.19 deleterious_low_confidence(0) unknown(0) TCGA-B0-4810-01 5 132158628 132158628 C T SHROOM1 Missense_Mutation p.D807N 0.13 deleterious(0) probably_damaging(0.934) TCGA-B0-4810-01 5 132158629 132158629 C A SHROOM1 Silent p.L806L 0.13 TCGA-B0-4810-01 5 153390869 153390869 A T FAM114A2 Missense_Mutation p.F309I 0.19 deleterious(0) probably_damaging(0.94) TCGA-B0-4810-01 6 137519168 137519168 T A IFNGR1 Nonstop_Mutation p.*490Cext*11 0.34 TCGA-B0-4810-01 6 32231923 32231923 T A XXbac-BPG154L12.4 RNA 0.38 TCGA-B0-4810-01 7 123672679 123672679 A T TMEM229A Missense_Mutation p.S127T 0.15 deleterious(0.01) benign(0.262) TCGA-B0-4810-01 7 151921164 151921167 AGGA - KMT2C Frame_Shift_Del p.S1086Vfs*31 0.21 TCGA-B0-4810-01 7 33054375 33054375 T G NT5C3A Missense_Mutation p.E326D 0.21 tolerated(1) benign(0.001) TCGA-B0-4810-01 8 100711812 100711812 G T VPS13B Missense_Mutation p.D2061Y 0.17 deleterious(0) probably_damaging(0.953) TCGA-B0-4810-01 8 10782233 10782233 C T XKR6 Missense_Mutation p.R291H 0.32 tolerated(0.28) probably_damaging(0.998) TCGA-B0-4810-01 8 120865431 120865431 G T DSCC1 Missense_Mutation p.D69E 0.23 tolerated(0.23) benign(0.014) TCGA-B0-4810-01 8 55542355 55542355 C A RP1 Missense_Mutation p.N1971K 0.21 deleterious(0.03) benign(0.143) TCGA-B0-4810-01 9 34971509 34971509 A G KIAA1045 Missense_Mutation p.S72G 0.09 tolerated(0.26) benign(0) TCGA-B0-4810-01 X 15540571 15540571 C A BMX Missense_Mutation p.Q205K 0.39 tolerated(0.89) unknown(0) TCGA-B0-4810-01 X 8763259 8763259 C T FAM9A Missense_Mutation p.E231K 0.30 tolerated_low_confidence(0.11) unknown(0) TCGA-B0-4811-01 10 1088643 1088643 T - IDI1 Frame_Shift_Del p.S156Vfs*6 0.28 TCGA-B0-4811-01 10 33199330 33199330 G A ITGB1 Missense_Mutation p.T662I 0.27 deleterious(0.04) benign(0) TCGA-B0-4811-01 10 50034823 50034823 C T WDFY4 Silent p.S2030S 0.15 TCGA-B0-4811-01 11 103057148 103057148 G C DYNC2H1 Missense_Mutation p.G2271R 0.23 benign(0.121) TCGA-B0-4811-01 11 15267524 15267524 G A INSC Missense_Mutation p.V560I 0.30 tolerated(0.79) benign(0.044) TCGA-B0-4811-01 11 1642604 1642604 A T KRTAP5-4 3'UTR 0.21 TCGA-B0-4811-01 11 20078104 20078104 C T NAV2 Silent p.N1643N 0.23 TCGA-B0-4811-01 11 26582750 26582750 C T MUC15 Silent p.P316P 0.13 TCGA-B0-4811-01 11 46388175 46388175 G A DGKZ Silent p.Q123Q 0.32 TCGA-B0-4811-01 11 63230842 63230842 T - HRASLS5 3'UTR 0.35 TCGA-B0-4811-01 11 65113420 65113420 A C DPF2 Silent p.G265G 0.21 TCGA-B0-4811-01 11 94113463 94113463 G A GPR83 Missense_Mutation p.P375L 0.25 tolerated(0.07) possibly_damaging(0.492) TCGA-B0-4811-01 12 21422275 21422275 C T SLCO1A2 3'UTR 0.28 TCGA-B0-4811-01 12 49436557 49436557 T C KMT2D Missense_Mutation p.S1917G 0.31 benign(0.006) TCGA-B0-4811-01 12 49436558 49436558 G C KMT2D Silent p.G1916G 0.32 TCGA-B0-4811-01 12 49495927 49495927 A G LMBR1L Silent p.A302A 0.38 TCGA-B0-4811-01 12 52448382 52448382 G A NR4A1 Silent p.S103S 0.33 TCGA-B0-4811-01 12 53685805 53685805 T C ESPL1 Missense_Mutation p.L1910P 0.36 deleterious(0) probably_damaging(1) TCGA-B0-4811-01 12 7967042 7967042 C T SLC2A14 Missense_Mutation p.R478H 0.27 deleterious(0.03) benign(0.287) TCGA-B0-4811-01 12 95422176 95422176 T C NR2C1 Silent p.V506V 0.27 TCGA-B0-4811-01 13 113839891 113839891 T A PCID2 Intron 0.31 TCGA-B0-4811-01 14 103571354 103571354 G C EXOC3L4 Missense_Mutation p.E471Q 0.25 tolerated(0.25) benign(0.145) TCGA-B0-4811-01 14 35777199 35777199 G C PSMA6 Splice_Site p.X26_splice 0.26 TCGA-B0-4811-01 14 75553771 75553771 T C NEK9 Missense_Mutation p.I923V 0.30 tolerated_low_confidence(0.22) benign(0.011) TCGA-B0-4811-01 15 102346601 102346601 A - OR4F6 Frame_Shift_Del p.K228Nfs*27 0.35 TCGA-B0-4811-01 15 48063502 48063502 G A SEMA6D Silent p.S914S 0.33 TCGA-B0-4811-01 15 62254726 62254726 T C VPS13C Missense_Mutation p.I1149M 0.28 deleterious(0) probably_damaging(0.942) TCGA-B0-4811-01 15 85407697 85407697 C - ALPK3 Frame_Shift_Del p.R1711Gfs*72 0.26 TCGA-B0-4811-01 16 10864178 10864178 C A TVP23A Missense_Mutation p.G198V 0.43 tolerated(0.18) benign(0.001) TCGA-B0-4811-01 16 1735538 1735538 T G HN1L Missense_Mutation p.F48C 0.38 deleterious(0) probably_damaging(0.995) TCGA-B0-4811-01 16 29706503 29706503 G C QPRT Missense_Mutation p.A178P 0.29 tolerated(0.05) benign(0.207) TCGA-B0-4811-01 16 30456187 30456187 A G SEPHS2 Missense_Mutation p.Y288H 0.28 possibly_damaging(0.737) TCGA-B0-4811-01 16 30667486 30667486 G A PRR14 Missense_Mutation p.V538I 0.27 tolerated(0.35) benign(0.024) TCGA-B0-4811-01 16 55362619 55362619 T C IRX6 Silent p.T243T 0.29 TCGA-B0-4811-01 16 61854956 61854956 C G CDH8 Missense_Mutation p.K299N 0.34 deleterious(0.05) probably_damaging(0.999) TCGA-B0-4811-01 16 68264909 68264909 G C ESRP2 Missense_Mutation p.T578S 0.24 tolerated(0.46) benign(0.001) TCGA-B0-4811-01 16 71318090 71318090 T A CMTR2 Silent p.I578I 0.29 TCGA-B0-4811-01 17 10356135 10356135 C A MYH4 Missense_Mutation p.D1076Y 0.04 deleterious(0) probably_damaging(0.949) TCGA-B0-4811-01 17 10404734 10404734 G A MYH1 Missense_Mutation p.S1144F 0.34 deleterious(0) benign(0.038) TCGA-B0-4811-01 17 1564002 1564002 T A PRPF8 Missense_Mutation p.N1543I 0.22 deleterious(0) probably_damaging(1) TCGA-B0-4811-01 17 18863863 18863863 C T SLC5A10 Silent p.I117I 0.20 TCGA-B0-4811-01 17 19641661 19641661 A G ALDH3A1 Missense_Mutation p.V441A 0.09 tolerated(0.62) benign(0) TCGA-B0-4811-01 17 27438508 27438508 C A MYO18A Missense_Mutation p.W945L 0.30 deleterious(0) probably_damaging(1) TCGA-B0-4811-01 17 27438520 27438520 T G MYO18A Missense_Mutation p.N941T 0.33 tolerated(0.11) possibly_damaging(0.673) TCGA-B0-4811-01 17 34147197 34147197 T C TAF15 Silent p.D43D 0.26 TCGA-B0-4811-01 17 40715165 40715165 G A COASY Silent p.R204R 0.32 TCGA-B0-4811-01 17 42266658 42266658 C A TMUB2 Missense_Mutation p.P102T 0.15 deleterious(0.05) benign(0.164) TCGA-B0-4811-01 17 4689557 4689557 C T VMO1 Missense_Mutation p.G31S 0.30 tolerated(0.59) benign(0.022) TCGA-B0-4811-01 17 4877038 4877038 T C CAMTA2 Silent p.E704E 0.23 TCGA-B0-4811-01 17 5009701 5009701 A G ZNF232 Silent p.T251T 0.27 TCGA-B0-4811-01 17 57746161 57746161 A T CLTC Missense_Mutation p.I718F 0.26 deleterious(0.03) probably_damaging(0.987) TCGA-B0-4811-01 17 78938208 78938208 C T RPTOR 3'UTR 0.18 TCGA-B0-4811-01 17 79990881 79990881 C T RAC3 Missense_Mutation p.A95V 0.32 tolerated_low_confidence(0.09) benign(0.045) TCGA-B0-4811-01 18 44137417 44137417 C T LOXHD1 5'UTR 0.25 TCGA-B0-4811-01 18 5396308 5396308 G A EPB41L3 Silent p.T955T 0.15 TCGA-B0-4811-01 18 5396318 5396318 T A EPB41L3 Missense_Mutation p.K952M 0.16 deleterious(0) possibly_damaging(0.738) TCGA-B0-4811-01 18 61654390 61654390 G A SERPINB8 Missense_Mutation p.V335I 0.20 tolerated(0.67) benign(0.03) TCGA-B0-4811-01 19 12501322 12501322 A - ZNF799 Frame_Shift_Del p.F630Lfs*52 0.24 TCGA-B0-4811-01 19 17611618 17611618 G T SLC27A1 Missense_Mutation p.E523D 0.20 deleterious(0) probably_damaging(1) TCGA-B0-4811-01 19 18322678 18322678 G A PDE4C Missense_Mutation p.T561M 0.35 deleterious(0) probably_damaging(1) TCGA-B0-4811-01 19 22942377 22942377 G T ZNF99 Silent p.R112R 0.05 TCGA-B0-4811-01 19 37239792 37239792 A G ZNF850 Missense_Mutation p.I717T 0.30 tolerated(0.8) probably_damaging(0.921) TCGA-B0-4811-01 19 52227201 52227201 C G HAS1 5'UTR 0.21 TCGA-B0-4811-01 19 54973869 54973869 G C LENG9 Missense_Mutation p.P303A 0.26 tolerated(0.19) possibly_damaging(0.737) TCGA-B0-4811-01 19 58453894 58453894 T A ZNF256 Silent p.I94I 0.20 TCGA-B0-4811-01 19 58453896 58453896 T G ZNF256 Missense_Mutation p.I94L 0.20 deleterious(0.04) benign(0.021) TCGA-B0-4811-01 19 9297415 9297415 G C OR7D2 3'UTR 0.31 TCGA-B0-4811-01 1 109825408 109825408 G A PSRC1 Intron 0.31 TCGA-B0-4811-01 1 120497758 120497758 G A NOTCH2 Silent p.C708C 0.26 TCGA-B0-4811-01 1 153782691 153782691 G A GATAD2B Missense_Mutation p.P582S 0.26 tolerated(0.4) possibly_damaging(0.593) TCGA-B0-4811-01 1 169394116 169394117 - C CCDC181 Frame_Shift_Ins p.D17Gfs*2 0.29 TCGA-B0-4811-01 1 247463877 247463877 G C ZNF496 Missense_Mutation p.R570G 0.23 deleterious(0) probably_damaging(0.991) TCGA-B0-4811-01 1 44433044 44433044 G T IPO13 Missense_Mutation p.A891S 0.31 tolerated(0.54) benign(0.1) TCGA-B0-4811-01 1 47075867 47075867 A T MOB3C Missense_Mutation p.F195Y 0.27 tolerated(0.07) benign(0.3) TCGA-B0-4811-01 1 76255936 76255936 G T RABGGTB Intron 0.33 TCGA-B0-4811-01 20 23345603 23345603 G T GZF1 Missense_Mutation p.D195Y 0.25 deleterious(0) benign(0.429) TCGA-B0-4811-01 20 30538174 30538174 G A PDRG1 Missense_Mutation p.T35I 0.43 tolerated(0.46) benign(0.016) TCGA-B0-4811-01 20 47604916 47604916 C T ARFGEF2 Silent p.H784H 0.35 TCGA-B0-4811-01 20 60895846 60895846 G A LAMA5 Silent p.S2199S 0.36 TCGA-B0-4811-01 20 896710 896710 G A ANGPT4 Missense_Mutation p.P50S 0.22 deleterious(0) possibly_damaging(0.788) TCGA-B0-4811-01 21 47685911 47685911 T A MCM3AP Missense_Mutation p.N987Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-B0-4811-01 22 37539570 37539570 G A IL2RB Missense_Mutation p.P65L 0.26 tolerated(0.16) possibly_damaging(0.9) TCGA-B0-4811-01 22 41573737 41573737 T C EP300 Missense_Mutation p.S2008P 0.24 benign(0) TCGA-B0-4811-01 22 50994825 50994825 C A SYCE3 Missense_Mutation p.A4S 0.30 tolerated(1) benign(0.001) TCGA-B0-4811-01 2 100055089 100055089 C G REV1 Missense_Mutation p.R396T 0.33 deleterious(0.01) benign(0.412) TCGA-B0-4811-01 2 113509843 113509843 C A CKAP2L Splice_Site p.X534_splice 0.36 TCGA-B0-4811-01 2 11767208 11767208 T A GREB1 Missense_Mutation p.M1476K 0.13 tolerated(0.08) benign(0.029) TCGA-B0-4811-01 2 120204412 120204412 A G SCTR Missense_Mutation p.Y355H 0.32 deleterious(0) probably_damaging(1) TCGA-B0-4811-01 2 135012082 135012082 G A MGAT5 Silent p.Q36Q 0.35 TCGA-B0-4811-01 2 160245882 160245882 C G BAZ2B Missense_Mutation p.E1064Q 0.36 probably_damaging(0.998) TCGA-B0-4811-01 2 163241253 163241253 T G KCNH7 Missense_Mutation p.E969D 0.38 tolerated(0.61) benign(0.002) TCGA-B0-4811-01 2 169869900 169869900 T C ABCB11 Missense_Mutation p.I91V 0.25 tolerated(0.78) benign(0.074) TCGA-B0-4811-01 2 219353073 219353073 G T USP37 Missense_Mutation p.P515Q 0.33 tolerated(0.15) benign(0.433) TCGA-B0-4811-01 2 219532706 219532706 T C RNF25 Splice_Site p.X96_splice 0.27 TCGA-B0-4811-01 2 234591121 234591121 G A UGT1A7 Missense_Mutation p.G180S 0.36 tolerated(0.17) benign(0.364) TCGA-B0-4811-01 2 25050900 25050900 A T ADCY3 Missense_Mutation p.L768Q 0.19 deleterious(0.05) probably_damaging(0.981) TCGA-B0-4811-01 2 61021866 61021866 T - PAPOLG Frame_Shift_Del p.F671Lfs*62 0.37 TCGA-B0-4811-01 3 113128137 113128137 A G WDR52 Missense_Mutation p.F236L 0.17 deleterious(0) benign(0.313) TCGA-B0-4811-01 3 130452841 130452841 T A PIK3R4 Missense_Mutation p.E334V 0.46 tolerated(0.28) benign(0.003) TCGA-B0-4811-01 3 40574189 40574189 C A ZNF621 Missense_Mutation p.Q310K 0.52 deleterious(0.01) probably_damaging(0.98) TCGA-B0-4811-01 3 47127749 47127749 A - SETD2 Frame_Shift_Del p.L1778Cfs*9 0.41 TCGA-B0-4811-01 3 49849346 49849346 T C UBA7 Missense_Mutation p.K299R 0.10 tolerated(0.28) benign(0.009) TCGA-B0-4811-01 3 52643942 52643943 - T PBRM1 Frame_Shift_Ins p.S652Ifs*13 0.41 TCGA-B0-4811-01 4 38023333 38023333 A T TBC1D1 Missense_Mutation p.I402L 0.18 tolerated(0.16) probably_damaging(0.977) TCGA-B0-4811-01 4 44685329 44685330 - AA GUF1 Frame_Shift_Ins p.I222Kfs*34 0.17 TCGA-B0-4811-01 4 65147225 65147225 A G TECRL Silent p.F295F 0.29 TCGA-B0-4811-01 5 102894735 102894736 - CAG NUDT12 In_Frame_Ins p.A213dup 0.30 TCGA-B0-4811-01 5 140529900 140529900 T - PCDHB6 Frame_Shift_Del p.W22Gfs*26 0.35 TCGA-B0-4811-01 5 14474189 14474189 T A TRIO Silent p.I2022I 0.04 TCGA-B0-4811-01 5 55237272 55237272 C T IL6ST Missense_Mutation p.V799I 0.05 tolerated(0.21) benign(0.005) TCGA-B0-4811-01 6 132032041 132032041 A - CTAGE9 Frame_Shift_Del p.P40Hfs*46 0.27 TCGA-B0-4811-01 6 165715542 165715542 C T C6orf118 Missense_Mutation p.R90H 0.41 tolerated(0.08) possibly_damaging(0.762) TCGA-B0-4811-01 6 169617847 169617847 C G THBS2 3'UTR 0.28 TCGA-B0-4811-01 6 41117371 41117371 G T TREML1 Missense_Mutation p.P303T 0.24 tolerated_low_confidence(0.96) possibly_damaging(0.642) TCGA-B0-4811-01 6 42656003 42656003 G A UBR2 Missense_Mutation p.V1635M 0.06 deleterious(0.03) possibly_damaging(0.5) TCGA-B0-4811-01 6 44224429 44224429 C T SLC35B2 Silent p.L66L 0.28 TCGA-B0-4811-01 6 75864169 75864169 G C COL12A1 Silent p.T1176T 0.34 TCGA-B0-4811-01 7 134618404 134618404 T G CALD1 Missense_Mutation p.I295S 0.27 tolerated_low_confidence(0.24) unknown(0) TCGA-B0-4811-01 7 143048913 143048913 C - CLCN1 Frame_Shift_Del p.L942Wfs*6 0.27 TCGA-B0-4811-01 7 53103762 53103762 C T POM121L12 Missense_Mutation p.T133I 0.25 tolerated(1) probably_damaging(0.934) TCGA-B0-4811-01 8 101725345 101725345 T G PABPC1 Silent p.V236V 0.25 TCGA-B0-4811-01 8 101725366 101725366 T A PABPC1 Missense_Mutation p.K229N 0.25 tolerated(0.08) benign(0.04) TCGA-B0-4811-01 8 105361373 105361373 A G DCSTAMP Missense_Mutation p.Y198C 0.31 tolerated(0.17) benign(0.004) TCGA-B0-4811-01 8 113349913 113349913 A C CSMD3 Missense_Mutation p.F2234V 0.33 tolerated(0.48) benign(0.03) TCGA-B0-4811-01 8 126448767 126448767 A T TRIB1 3'UTR 0.18 TCGA-B0-4811-01 8 131136342 131136342 C G ASAP1 Missense_Mutation p.K508N 0.25 tolerated(0.1) probably_damaging(0.997) TCGA-B0-4811-01 8 134030154 134030154 C T TG Missense_Mutation p.P2232S 0.29 deleterious(0) probably_damaging(0.999) TCGA-B0-4811-01 8 144668953 144668953 T A EEF1D Silent p.A387A 0.22 TCGA-B0-4811-01 8 145059205 145059205 G A PARP10 Missense_Mutation p.T322I 0.24 tolerated(0.18) benign(0.001) TCGA-B0-4811-01 9 104499650 104499650 G T GRIN3A Silent p.G204G 0.34 TCGA-B0-4811-01 9 108147762 108147762 T A SLC44A1 Missense_Mutation p.D643E 0.30 tolerated(0.59) benign(0.002) TCGA-B0-4811-01 9 127113113 127113113 C T NEK6 Intron 0.14 TCGA-B0-4811-01 9 131480826 131480826 A C PKN3 Splice_Site p.X683_splice 0.15 TCGA-B0-4811-01 9 136412244 136412244 T C ADAMTSL2 Missense_Mutation p.V283A 0.19 deleterious(0.02) benign(0.367) TCGA-B0-4811-01 9 71855060 71855060 A G TJP2 Missense_Mutation p.T886A 0.29 deleterious(0) probably_damaging(0.999) TCGA-B0-4815-01 10 103789421 103789421 A G C10orf76 Missense_Mutation p.F130L 0.15 tolerated(0.18) benign(0.02) TCGA-B0-4815-01 10 28900809 28900809 C G WAC Missense_Mutation p.I465M 0.05 tolerated(0.1) benign(0.003) TCGA-B0-4815-01 10 95719558 95719558 G C PIPSL RNA 0.06 TCGA-B0-4815-01 11 118185183 118185183 C A CD3E Missense_Mutation p.P181T 0.12 deleterious(0) probably_damaging(1) TCGA-B0-4815-01 11 118185184 118185184 C T CD3E Missense_Mutation p.P181L 0.14 deleterious(0) probably_damaging(1) TCGA-B0-4815-01 11 64427892 64427892 T G NRXN2 Silent p.G767G 0.14 TCGA-B0-4815-01 11 76750646 76750646 C T B3GNT6 Silent p.L17L 0.18 TCGA-B0-4815-01 12 121655012 121655012 C T P2RX4 Silent p.G86G 0.14 TCGA-B0-4815-01 12 44537365 44537365 G A TMEM117 Missense_Mutation p.E150K 0.12 tolerated(0.24) possibly_damaging(0.452) TCGA-B0-4815-01 12 46355548 46355548 C T SCAF11 Missense_Mutation p.E52K 0.11 deleterious(0) probably_damaging(0.997) TCGA-B0-4815-01 12 51456670 51456670 A G CSRNP2 3'UTR 0.12 TCGA-B0-4815-01 12 53216799 53216799 C T KRT79 Splice_Site p.X456_splice 0.14 TCGA-B0-4815-01 12 53579212 53579212 T G ZNF740 Missense_Mutation p.D67E 0.08 tolerated(1) benign(0.417) TCGA-B0-4815-01 14 23511574 23511574 C A PSMB11 Missense_Mutation p.A47D 0.27 tolerated(0.24) probably_damaging(0.984) TCGA-B0-4815-01 14 50904202 50904202 C - MAP4K5 Frame_Shift_Del p.C625Ffs*3 0.38 TCGA-B0-4815-01 15 38643311 38643311 T C SPRED1 Missense_Mutation p.Y261H 0.17 deleterious(0) probably_damaging(0.999) TCGA-B0-4815-01 15 67524205 67524205 C T AAGAB Missense_Mutation p.R161Q 0.17 deleterious(0.02) benign(0.438) TCGA-B0-4815-01 15 99511748 99511748 C T PGPEP1L Missense_Mutation p.E184K 0.14 tolerated(0.87) benign(0) TCGA-B0-4815-01 16 30794783 30794783 G C ZNF629 Missense_Mutation p.P289R 0.09 deleterious(0.02) probably_damaging(1) TCGA-B0-4815-01 16 88931430 88931430 C A PABPN1L Missense_Mutation p.G189V 0.24 deleterious(0) probably_damaging(1) TCGA-B0-4815-01 17 28268766 28268766 G C EFCAB5 5'UTR 0.07 TCGA-B0-4815-01 17 35487038 35487038 A G ACACA Missense_Mutation p.V1929A 0.17 tolerated(0.12) benign(0.312) TCGA-B0-4815-01 17 56084396 56084396 C T SRSF1 Missense_Mutation p.V35M 0.12 deleterious(0.03) benign(0.041) TCGA-B0-4815-01 17 6684202 6684202 A C FBXO39 Missense_Mutation p.T339P 0.20 tolerated(0.09) possibly_damaging(0.642) TCGA-B0-4815-01 19 10599946 10599946 A G KEAP1 Missense_Mutation p.W544R 0.22 deleterious(0) probably_damaging(1) TCGA-B0-4815-01 19 14204026 14204026 C G PRKACA Missense_Mutation p.K318N 0.18 deleterious(0.05) benign(0.026) TCGA-B0-4815-01 19 1792020 1792020 G A ATP8B3 Missense_Mutation p.R724W 0.19 deleterious(0) probably_damaging(1) TCGA-B0-4815-01 19 22362481 22362481 T C ZNF676 3'UTR 0.12 TCGA-B0-4815-01 19 37004897 37004897 G A ZNF260 3'UTR 0.20 TCGA-B0-4815-01 19 57336061 57336061 G A PEG3 5'UTR 0.12 TCGA-B0-4815-01 19 9868360 9868360 G C ZNF846 Missense_Mutation p.L465V 0.14 deleterious(0.04) probably_damaging(0.987) TCGA-B0-4815-01 1 11128077 11128077 C G EXOSC10 Missense_Mutation p.G872A 0.20 tolerated_low_confidence(0.09) benign(0.107) TCGA-B0-4815-01 1 159505240 159505240 A C OR10J5 Silent p.L186L 0.12 TCGA-B0-4815-01 1 173526501 173526501 C T SLC9C2 Missense_Mutation p.R398Q 0.13 tolerated(1) benign(0.003) TCGA-B0-4815-01 1 182554803 182554803 T - RNASEL Frame_Shift_Del p.Y380Sfs*10 0.19 TCGA-B0-4815-01 1 193181526 193181526 G A CDC73 Missense_Mutation p.R358Q 0.12 deleterious(0.01) probably_damaging(0.984) TCGA-B0-4815-01 1 205084987 205084987 T C RBBP5 Missense_Mutation p.E15G 0.15 deleterious(0) possibly_damaging(0.906) TCGA-B0-4815-01 1 207304992 207304992 C T C4BPA Missense_Mutation p.R331C 0.15 tolerated(0.15) possibly_damaging(0.892) TCGA-B0-4815-01 1 229730080 229730080 C T TAF5L Silent p.L578L 0.07 TCGA-B0-4815-01 1 234458836 234458836 C T SLC35F3 Silent p.L440L 0.17 TCGA-B0-4815-01 1 26153147 26153147 C A MTFR1L Missense_Mutation p.P94H 0.33 deleterious(0) probably_damaging(0.996) TCGA-B0-4815-01 1 54506474 54506474 A C TMEM59 Missense_Mutation p.F221C 0.19 tolerated(0.17) possibly_damaging(0.46) TCGA-B0-4815-01 1 59247909 59247909 G C JUN Silent p.A278A 0.18 TCGA-B0-4815-01 1 93657661 93657661 G C CCDC18 Missense_Mutation p.L243F 0.08 deleterious(0) probably_damaging(1) TCGA-B0-4815-01 20 40126106 40126106 T C CHD6 Missense_Mutation p.E337G 0.28 deleterious(0.01) probably_damaging(0.93) TCGA-B0-4815-01 20 51589805 51589805 C T TSHZ2 5'UTR 0.12 TCGA-B0-4815-01 21 10910388 10910388 G T TPTE Missense_Mutation p.N456K 0.07 deleterious(0.04) benign(0.044) TCGA-B0-4815-01 21 41416162 41416162 C T DSCAM Silent p.A1742A 0.08 TCGA-B0-4815-01 22 20386644 20386644 G A PI4KAP1 RNA 0.31 TCGA-B0-4815-01 22 20783904 20783904 G A SCARF2 Missense_Mutation p.A448V 0.13 tolerated(0.33) benign(0.334) TCGA-B0-4815-01 22 42608574 42608574 C G TCF20 Missense_Mutation p.G913A 0.09 probably_damaging(0.999) TCGA-B0-4815-01 2 130832626 130832626 C T POTEF Missense_Mutation p.E807K 0.29 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-B0-4815-01 2 160206389 160206389 G C BAZ2B Missense_Mutation p.R1565G 0.07 possibly_damaging(0.901) TCGA-B0-4815-01 2 202002474 202002474 G A CFLAR Intron 0.23 TCGA-B0-4815-01 2 228563604 228563604 T G SLC19A3 Missense_Mutation p.K276T 0.17 tolerated(0.15) benign(0.271) TCGA-B0-4815-01 2 47278920 47278920 C A TTC7A Missense_Mutation p.L685M 0.44 tolerated(0.14) benign(0.285) TCGA-B0-4815-01 2 85066361 85066361 G T TRABD2A Silent p.I252I 0.16 TCGA-B0-4815-01 3 14862883 14862883 G A FGD5 Missense_Mutation p.A769T 0.17 tolerated(0.09) probably_damaging(0.95) TCGA-B0-4815-01 3 158545109 158545109 A T MFSD1 Silent p.I508I 0.19 TCGA-B0-4815-01 3 52668807 52668807 G C PBRM1 Nonsense_Mutation p.S371* 0.17 TCGA-B0-4815-01 4 24810062 24810062 G A CCDC149 Silent p.D513D 0.22 TCGA-B0-4815-01 4 25032128 25032128 A G LGI2 Missense_Mutation p.I63T 0.19 deleterious(0) benign(0.118) TCGA-B0-4815-01 4 69817431 69817431 G A UGT2A3 Silent p.F16F 0.15 TCGA-B0-4815-01 5 137257415 137257415 T G PKD2L2 Silent p.T473T 0.15 TCGA-B0-4815-01 5 161277823 161277823 A T GABRA1 Nonsense_Mutation p.K3* 0.19 TCGA-B0-4815-01 5 26881222 26881222 A G CDH9 3'UTR 0.19 TCGA-B0-4815-01 5 482713 482713 G A SLC9A3 Silent p.L436L 0.40 TCGA-B0-4815-01 5 54415634 54415634 A C CDC20B Missense_Mutation p.F485C 0.20 deleterious(0) probably_damaging(0.999) TCGA-B0-4815-01 5 6372701 6372701 A T MED10 Missense_Mutation p.L108Q 0.23 tolerated(0.44) possibly_damaging(0.859) TCGA-B0-4815-01 5 75932958 75932958 C T IQGAP2 Missense_Mutation p.S627L 0.13 tolerated(0.1) benign(0.001) TCGA-B0-4815-01 5 79033431 79033431 C T CMYA5 Missense_Mutation p.S2948F 0.07 possibly_damaging(0.799) TCGA-B0-4815-01 6 110053850 110053850 A G FIG4 Missense_Mutation p.I153V 0.16 deleterious(0.03) benign(0.403) TCGA-B0-4815-01 6 117665413 117665413 A T ROS1 Missense_Mutation p.L1445Q 0.16 deleterious(0) probably_damaging(0.99) TCGA-B0-4815-01 6 132938953 132938953 A G TAAR2 Missense_Mutation p.I131T 0.17 deleterious(0.02) probably_damaging(0.966) TCGA-B0-4815-01 6 136932484 136932484 C A MAP3K5 Missense_Mutation p.K819N 0.17 deleterious(0) probably_damaging(1) TCGA-B0-4815-01 6 160227045 160227045 G C PNLDC1 Silent p.V153V 0.07 TCGA-B0-4815-01 6 25777032 25777032 T A SLC17A4 Intron 0.15 TCGA-B0-4815-01 6 43592732 43592732 A T GTPBP2 Missense_Mutation p.F258Y 0.18 deleterious(0) probably_damaging(0.935) TCGA-B0-4815-01 6 52622679 52622679 G A GSTA2 Silent p.L23L 0.18 TCGA-B0-4815-01 6 64423156 64423156 G A PHF3 Missense_Mutation p.R1891Q 0.06 deleterious(0) possibly_damaging(0.884) TCGA-B0-4815-01 7 101870899 101870899 C - CUX1 Frame_Shift_Del p.Y1140Tfs*3 0.11 TCGA-B0-4815-01 7 103018052 103018052 C A SLC26A5 Silent p.L660L 0.16 TCGA-B0-4815-01 7 139724293 139724293 A - PARP12 3'UTR 0.33 TCGA-B0-4815-01 7 141762388 141762388 C T MGAM Silent p.A1381A 0.11 TCGA-B0-4815-01 7 1478560 1478560 G A MICALL2 Missense_Mutation p.L680F 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-B0-4815-01 7 73973274 73973274 C A GTF2IRD1 Missense_Mutation p.L763M 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-B0-4815-01 7 75517558 75517558 G T RHBDD2 Missense_Mutation p.G329V 0.15 tolerated_low_confidence(0.09) benign(0.118) TCGA-B0-4815-01 7 75517559 75517559 C T RHBDD2 Silent p.G329G 0.15 TCGA-B0-4815-01 7 91855963 91855963 T C KRIT1 Silent p.L341L 0.16 TCGA-B0-4815-01 8 124357170 124357170 A - ATAD2 Frame_Shift_Del p.L891Yfs*46 0.19 TCGA-B0-4815-01 8 134270635 134270635 C T NDRG1 Missense_Mutation p.G142S 0.23 deleterious(0) probably_damaging(0.999) TCGA-B0-4815-01 8 140631062 140631062 G A KCNK9 Silent p.H188H 0.09 TCGA-B0-4815-01 9 114184459 114184459 A T KIAA0368 Silent p.T607T 0.27 TCGA-B0-4815-01 X 50147057 50147057 G T DGKK RNA 0.27 TCGA-B0-4816-01 10 102738875 102738875 A T SEMA4G Missense_Mutation p.K277M 0.22 tolerated(0.09) possibly_damaging(0.812) TCGA-B0-4816-01 10 103339406 103339406 T C POLL Missense_Mutation p.H511R 0.12 deleterious(0.02) possibly_damaging(0.902) TCGA-B0-4816-01 10 27324608 27324608 A C ANKRD26 Missense_Mutation p.L924R 0.21 deleterious(0) probably_damaging(0.988) TCGA-B0-4816-01 10 38343924 38343924 C - ZNF33A Frame_Shift_Del p.S291Lfs*8 0.25 TCGA-B0-4816-01 10 7621991 7621991 C G ITIH5 Missense_Mutation p.R382T 0.22 tolerated(0.27) benign(0.098) TCGA-B0-4816-01 10 91344174 91344174 C A PANK1 Missense_Mutation p.D596Y 0.19 deleterious(0.01) possibly_damaging(0.681) TCGA-B0-4816-01 10 93784687 93784687 A G BTAF1 Missense_Mutation p.S1680G 0.19 deleterious(0.02) benign(0.248) TCGA-B0-4816-01 11 4661043 4661044 - CC OR51D1 Frame_Shift_Ins p.I10Lfs*3 0.28 TCGA-B0-4816-01 11 62569079 62569079 C G NXF1 Missense_Mutation p.G222R 0.21 tolerated(0.35) benign(0.007) TCGA-B0-4816-01 11 6592961 6592961 C T DNHD1 Silent p.A4669A 0.24 TCGA-B0-4816-01 12 130926698 130926698 G A RIMBP2 Missense_Mutation p.T383M 0.20 deleterious(0) probably_damaging(0.981) TCGA-B0-4816-01 12 7527159 7527159 C T CD163L1 Silent p.G1096G 0.20 TCGA-B0-4816-01 14 102906859 102906859 G A TECPR2 Missense_Mutation p.E889K 0.15 tolerated(0.29) benign(0.362) TCGA-B0-4816-01 15 64448267 64448267 G A PPIB Silent p.C202C 0.18 TCGA-B0-4816-01 15 64448268 64448268 C T PPIB Missense_Mutation p.C202Y 0.18 deleterious(0.01) possibly_damaging(0.908) TCGA-B0-4816-01 15 81624861 81624861 C T TMC3 Missense_Mutation p.G1068S 0.26 tolerated_low_confidence(0.35) benign(0.002) TCGA-B0-4816-01 15 86311460 86311460 G A KLHL25 Missense_Mutation p.R528C 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-B0-4816-01 17 3945845 3945845 C T ZZEF1 Missense_Mutation p.V2062M 0.22 tolerated(0.11) benign(0.01) TCGA-B0-4816-01 17 43368049 43368049 T - MAP3K14 RNA 0.62 TCGA-B0-4816-01 17 53798317 53798317 C G TMEM100 Missense_Mutation p.E39Q 0.25 tolerated(0.1) probably_damaging(0.994) TCGA-B0-4816-01 17 62080196 62080196 T C ICAM2 Missense_Mutation p.I247V 0.14 tolerated(1) benign(0.004) TCGA-B0-4816-01 17 7222420 7222420 T - NEURL4 Frame_Shift_Del p.K1211Nfs*57 0.24 TCGA-B0-4816-01 19 12258263 12258263 T - ZNF625 Frame_Shift_Del p.K46Nfs*18 0.20 TCGA-B0-4816-01 19 2917940 2917940 A T ZNF57 Missense_Mutation p.I441F 0.21 deleterious(0.01) possibly_damaging(0.728) TCGA-B0-4816-01 19 37382715 37382715 A G ZNF829 Silent p.C407C 0.28 TCGA-B0-4816-01 19 41105107 41105107 G A LTBP4 Missense_Mutation p.A51T 0.17 tolerated_low_confidence(0.14) benign(0.107) TCGA-B0-4816-01 19 42830379 42830379 C T MEGF8 5'UTR 0.14 TCGA-B0-4816-01 1 113633959 113633959 T C LRIG2 Silent p.L87L 0.20 TCGA-B0-4816-01 1 152005123 152005123 A T S100A11 3'UTR 0.17 TCGA-B0-4816-01 1 157014204 157014204 A T ARHGEF11 5'UTR 0.17 TCGA-B0-4816-01 1 237947442 237947442 C T RYR2 Missense_Mutation p.R4144C 0.17 probably_damaging(0.99) TCGA-B0-4816-01 1 39919424 39919424 G A MACF1 Missense_Mutation p.A4871T 0.17 possibly_damaging(0.495) TCGA-B0-4816-01 1 39919425 39919425 C T MACF1 Missense_Mutation p.A4871V 0.16 possibly_damaging(0.891) TCGA-B0-4816-01 1 45191175 45191175 C T C1orf228 3'UTR 0.40 TCGA-B0-4816-01 1 62740313 62740313 C T KANK4 Missense_Mutation p.G155R 0.18 deleterious(0) benign(0.282) TCGA-B0-4816-01 1 67340463 67340463 C T WDR78 Splice_Site p.X267_splice 0.22 TCGA-B0-4816-01 1 78425928 78425928 G C FUBP1 Missense_Mutation p.A506G 0.25 tolerated(0.19) unknown(0) TCGA-B0-4816-01 1 82372717 82372717 C A LPHN2 Missense_Mutation p.A30D 0.16 deleterious(0.01) probably_damaging(1) TCGA-B0-4816-01 1 92184975 92184975 C A TGFBR3 Missense_Mutation p.C487F 0.17 deleterious(0) probably_damaging(0.999) TCGA-B0-4816-01 22 29696195 29696195 T G EWSR1 3'UTR 0.26 TCGA-B0-4816-01 2 131878373 131878374 - G PLEKHB2 Intron 0.33 TCGA-B0-4816-01 2 198260796 198260796 C A SF3B1 Missense_Mutation p.D1175Y 0.27 deleterious(0) probably_damaging(0.912) TCGA-B0-4816-01 2 233322764 233322764 C A ALPI Missense_Mutation p.P305T 0.18 deleterious(0) probably_damaging(1) TCGA-B0-4816-01 2 43805654 43805654 A T THADA Missense_Mutation p.L272M 0.25 tolerated(0.06) possibly_damaging(0.495) TCGA-B0-4816-01 2 69702945 69702945 G A AAK1 3'UTR 0.14 TCGA-B0-4816-01 2 74746760 74746760 A C DQX1 Missense_Mutation p.L577V 0.16 tolerated(1) benign(0.018) TCGA-B0-4816-01 2 90139123 90139123 G A IGKV1D-16 Missense_Mutation p.A7T 0.14 tolerated(0.53) benign(0.012) TCGA-B0-4816-01 3 32859529 32859529 C T TRIM71 5'UTR 0.27 TCGA-B0-4816-01 3 52637689 52637689 C A PBRM1 Missense_Mutation p.R876L 0.25 deleterious(0) probably_damaging(0.913) TCGA-B0-4816-01 4 13610222 13610222 T A BOD1L1 Missense_Mutation p.E558D 0.21 probably_damaging(0.996) TCGA-B0-4816-01 4 25819801 25819801 G T SEL1L3 Missense_Mutation p.P508H 0.22 tolerated(0.37) benign(0.001) TCGA-B0-4816-01 4 26432360 26432360 C G RBPJ Missense_Mutation p.R412G 0.25 tolerated(0.5) possibly_damaging(0.813) TCGA-B0-4816-01 4 39436298 39436298 G T KLB Missense_Mutation p.A432S 0.26 tolerated(0.39) possibly_damaging(0.817) TCGA-B0-4816-01 4 87643378 87643378 A C PTPN13 Missense_Mutation p.T467P 0.24 tolerated(0.24) benign(0.398) TCGA-B0-4816-01 5 127700355 127700355 C A FBN2 Missense_Mutation p.G789V 0.21 deleterious(0) probably_damaging(0.926) TCGA-B0-4816-01 5 131894990 131894990 T C RAD50 Silent p.C48C 0.24 TCGA-B0-4816-01 5 150948482 150948482 G A FAT2 Missense_Mutation p.A4V 0.13 benign(0.002) TCGA-B0-4816-01 5 35759818 35759818 T C SPEF2 Missense_Mutation p.L1206P 0.14 tolerated(0.3) benign(0.444) TCGA-B0-4816-01 5 57913493 57913493 G A RAB3C Silent p.R16R 0.19 TCGA-B0-4816-01 5 74069762 74069762 G A NSA2 Missense_Mutation p.G198S 0.20 tolerated(0.27) benign(0.071) TCGA-B0-4816-01 6 108204350 108204350 C T SEC63 Missense_Mutation p.E559K 0.21 tolerated(0.56) benign(0.002) TCGA-B0-4816-01 6 32097100 32097100 T C FKBPL Missense_Mutation p.E153G 0.14 deleterious(0.01) benign(0.255) TCGA-B0-4816-01 6 51777241 51777241 T A PKHD1 Missense_Mutation p.K2085N 0.11 tolerated(0.14) benign(0.017) TCGA-B0-4816-01 6 74192199 74192199 A T MTO1 Missense_Mutation p.Q538L 0.19 deleterious(0.04) benign(0.363) TCGA-B0-4816-01 7 127950874 127950874 C G RBM28 Missense_Mutation p.K752N 0.25 deleterious(0) probably_damaging(0.997) TCGA-B0-4816-01 7 27140542 27140542 C T HOXA2 Missense_Mutation p.D312N 0.13 tolerated(0.2) benign(0.004) TCGA-B0-4816-01 7 74991239 74991239 C T STAG3L1 Intron 0.23 TCGA-B0-4816-01 8 21951995 21951995 G C FAM160B2 Missense_Mutation p.W30C 0.40 deleterious(0) probably_damaging(1) TCGA-B0-4816-01 9 32571008 32571008 C A NDUFB6 Missense_Mutation p.V75L 0.20 tolerated(0.44) benign(0.055) TCGA-B0-4816-01 9 97062172 97062172 C T ZNF169 Missense_Mutation p.A111V 0.30 tolerated(1) benign(0.001) TCGA-B0-4816-01 X 53239736 53239736 C A KDM5C Missense_Mutation p.G536W 0.43 deleterious(0) probably_damaging(1) TCGA-B0-4816-01 X 69478441 69478441 C A P2RY4 Missense_Mutation p.S345I 0.29 tolerated_low_confidence(0.08) benign(0.007) TCGA-B0-4816-01 X 83128364 83128364 A G CYLC1 Silent p.T216T 0.49 TCGA-B0-4818-01 10 115894782 115894782 T A C10orf118 Silent p.T515T 0.21 TCGA-B0-4818-01 10 27538399 27538399 C A RP11-85G18.6 Intron 0.22 TCGA-B0-4818-01 10 51464817 51464817 T A AGAP7 Nonsense_Mutation p.K547* 0.11 TCGA-B0-4818-01 10 87379734 87379734 G A GRID1 Silent p.A750A 0.10 TCGA-B0-4818-01 11 124626148 124626148 C T ESAM Missense_Mutation p.D188N 0.24 tolerated(0.11) benign(0.21) TCGA-B0-4818-01 11 33065367 33065367 A - TCP11L1 Frame_Shift_Del p.K17Nfs*24 0.30 TCGA-B0-4818-01 11 3700799 3700799 G A NUP98 Silent p.L1686L 0.17 TCGA-B0-4818-01 11 47602207 47602207 C T NDUFS3 Intron 0.19 TCGA-B0-4818-01 11 50003804 50003804 C A OR4C12 Missense_Mutation p.K78N 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.791) TCGA-B0-4818-01 11 71728699 71728699 C A NUMA1 Intron 0.22 TCGA-B0-4818-01 11 83194318 83194318 G A DLG2 Intron 0.13 TCGA-B0-4818-01 12 19514587 19514587 A T PLEKHA5 Missense_Mutation p.E1185D 0.23 deleterious(0.05) benign(0.005) TCGA-B0-4818-01 12 49312242 49312242 T - CCDC65 Frame_Shift_Del p.I265Nfs*8 0.21 TCGA-B0-4818-01 12 57995606 57995606 T A PIP4K2C 3'UTR 0.27 TCGA-B0-4818-01 13 20978192 20978192 G T CRYL1 3'UTR 0.24 TCGA-B0-4818-01 13 21063530 21063530 T C CRYL1 Silent p.V85V 0.24 TCGA-B0-4818-01 13 46919715 46919715 T C KIAA0226L Missense_Mutation p.Q551R 0.17 tolerated(0.05) possibly_damaging(0.612) TCGA-B0-4818-01 14 36008785 36008785 T C RALGAPA1 Missense_Mutation p.K2072R 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-B0-4818-01 14 45433557 45433557 T A FAM179B Missense_Mutation p.C645S 0.25 tolerated(0.48) benign(0.108) TCGA-B0-4818-01 15 28436294 28436294 C A HERC2 Missense_Mutation p.V2850L 0.24 benign(0.115) TCGA-B0-4818-01 15 43360146 43360146 C T UBR1 Missense_Mutation p.D250N 0.25 tolerated(1) benign(0.034) TCGA-B0-4818-01 15 64448384 64448384 A G SNX22 3'UTR 0.28 TCGA-B0-4818-01 15 72579669 72579669 T A CELF6 Missense_Mutation p.Q461H 0.23 deleterious(0) benign(0.364) TCGA-B0-4818-01 15 86312584 86312584 A G KLHL25 Missense_Mutation p.M153T 0.24 deleterious(0.01) benign(0.159) TCGA-B0-4818-01 16 20803368 20803369 - AA ACSM3 Frame_Shift_Ins p.I458Kfs*37 0.29 TCGA-B0-4818-01 16 30747584 30747584 G T SRCAP Missense_Mutation p.V2265L 0.19 possibly_damaging(0.775) TCGA-B0-4818-01 16 46950590 46950590 G T GPT2 Nonsense_Mutation p.E291* 0.21 TCGA-B0-4818-01 18 12697299 12697299 G A CEP76 Missense_Mutation p.S210L 0.16 deleterious(0) possibly_damaging(0.864) TCGA-B0-4818-01 18 23632629 23632629 T - SS18 Frame_Shift_Del p.N189Tfs*8 0.30 TCGA-B0-4818-01 18 55027490 55027490 T A ST8SIA3 Silent p.T375T 0.22 TCGA-B0-4818-01 19 36494533 36494533 C G SYNE4 Missense_Mutation p.R338T 0.11 tolerated(0.07) possibly_damaging(0.587) TCGA-B0-4818-01 19 42821063 42821063 A C TMEM145 Missense_Mutation p.Y283S 0.29 deleterious(0.03) benign(0.116) TCGA-B0-4818-01 1 109884661 109884661 T C SORT1 Silent p.V361V 0.14 TCGA-B0-4818-01 1 119923771 119923771 T C HAO2 Silent p.T21T 0.21 TCGA-B0-4818-01 1 155891420 155891421 - TT KIAA0907 Splice_Site p.X338_splice 0.25 TCGA-B0-4818-01 1 162040040 162040040 G A NOS1AP Missense_Mutation p.A25T 0.24 deleterious(0) possibly_damaging(0.83) TCGA-B0-4818-01 1 171174636 171174637 - A FMO2 Frame_Shift_Ins p.M349Ifs*6 0.19 TCGA-B0-4818-01 1 186114885 186114885 T C HMCN1 Missense_Mutation p.V4813A 0.19 possibly_damaging(0.9) TCGA-B0-4818-01 1 237947723 237947723 C T RYR2 Silent p.S4237S 0.16 TCGA-B0-4818-01 1 89454019 89454019 C A CCBL2 Missense_Mutation p.Q5H 0.19 tolerated(0.62) benign(0) TCGA-B0-4818-01 20 5294646 5294646 C A PROKR2 Missense_Mutation p.G124C 0.23 deleterious(0.03) probably_damaging(0.97) TCGA-B0-4818-01 20 58422430 58422430 A G PHACTR3 3'UTR 0.28 TCGA-B0-4818-01 21 35468377 35468377 C - SLC5A3 Frame_Shift_Del p.H294Mfs*12 0.26 TCGA-B0-4818-01 22 32015546 32015546 C T PISD 3'UTR 0.13 TCGA-B0-4818-01 2 101624288 101624288 A T TBC1D8 Missense_Mutation p.L1140M 0.26 tolerated_low_confidence(0.17) benign(0.056) TCGA-B0-4818-01 2 111395447 111395447 C T BUB1 3'UTR 0.15 TCGA-B0-4818-01 2 135722316 135722316 G A MAP3K19 3'UTR 0.28 TCGA-B0-4818-01 2 136418887 136418887 T A R3HDM1 Silent p.P657P 0.20 TCGA-B0-4818-01 2 136418888 136418888 C A R3HDM1 Missense_Mutation p.Q658K 0.20 deleterious(0) possibly_damaging(0.622) TCGA-B0-4818-01 2 173354378 173354378 A G ITGA6 Missense_Mutation p.N891D 0.25 tolerated(0.48) benign(0.005) TCGA-B0-4818-01 2 179438104 179438111 CTTCCACC - TTN Frame_Shift_Del p.G24250* 0.30 TCGA-B0-4818-01 2 179472591 179472591 T - TTN Frame_Shift_Del p.K17641Nfs*4 0.33 TCGA-B0-4818-01 2 220075789 220075789 G C ABCB6 Silent p.P670P 0.28 TCGA-B0-4818-01 2 65298597 65298597 A T CEP68 Missense_Mutation p.T123S 0.13 tolerated(0.22) benign(0.023) TCGA-B0-4818-01 2 72411218 72411218 C G EXOC6B Silent p.L765L 0.22 TCGA-B0-4818-01 2 74702153 74702153 C T CCDC142 Missense_Mutation p.R622H 0.33 tolerated(0.15) probably_damaging(0.997) TCGA-B0-4818-01 2 98171687 98171688 AC - ANKRD36B Splice_Site 0.28 TCGA-B0-4818-01 3 100356181 100356181 C T GPR128 Silent p.L211L 0.25 TCGA-B0-4818-01 3 10191645 10191646 - T VHL Frame_Shift_Ins p.*214L 0.32 TCGA-B0-4818-01 3 123301066 123301066 A G PTPLB Missense_Mutation p.L89S 0.18 deleterious(0) benign(0.196) TCGA-B0-4818-01 3 184947235 184947235 C T EHHADH Missense_Mutation p.D150N 0.20 deleterious(0.04) possibly_damaging(0.595) TCGA-B0-4818-01 3 188426055 188426055 G T LPP Missense_Mutation p.G372C 0.20 deleterious(0.01) possibly_damaging(0.627) TCGA-B0-4818-01 3 196613371 196613371 A G SENP5 Missense_Mutation p.Y440C 0.05 tolerated(0.2) benign(0.001) TCGA-B0-4818-01 3 52637738 52637738 C T PBRM1 Missense_Mutation p.E860K 0.25 deleterious(0) benign(0.273) TCGA-B0-4818-01 3 52637740 52637740 G T PBRM1 Nonsense_Mutation p.S859* 0.27 TCGA-B0-4818-01 3 54952481 54952481 A G LRTM1 3'UTR 0.09 TCGA-B0-4818-01 4 520921 520921 G A PIGG Silent p.K721K 0.22 TCGA-B0-4818-01 4 77949832 77949832 A G SEPT11 Missense_Mutation p.Q335R 0.23 tolerated(0.09) benign(0.115) TCGA-B0-4818-01 5 109940964 109940964 A T TMEM232 Silent p.T374T 0.22 TCGA-B0-4818-01 5 121759046 121759046 C T SNCAIP Missense_Mutation p.A205V 0.30 deleterious(0.01) benign(0.081) TCGA-B0-4818-01 5 157078237 157078237 T C SOX30 Missense_Mutation p.I284V 0.20 tolerated(0.06) benign(0.008) TCGA-B0-4818-01 5 32789575 32789575 G T AC026703.1 Missense_Mutation p.R23M 0.33 possibly_damaging(0.702) TCGA-B0-4818-01 5 41917432 41917432 A T C5orf51 3'UTR 0.22 TCGA-B0-4818-01 6 126176393 126176394 - T NCOA7 Intron 0.22 TCGA-B0-4818-01 6 151936781 151936781 A C CCDC170 Missense_Mutation p.K638N 0.23 tolerated(0.08) benign(0.053) TCGA-B0-4818-01 6 26056217 26056217 G A HIST1H1C Missense_Mutation p.P147L 0.25 deleterious(0.04) unknown(0) TCGA-B0-4818-01 6 43742101 43742101 A G VEGFA Silent p.A210A 0.19 TCGA-B0-4818-01 6 53133787 53133787 A G ELOVL5 3'UTR 0.17 TCGA-B0-4818-01 7 16720980 16720980 G A BZW2 Missense_Mutation p.C97Y 0.24 deleterious(0) benign(0.424) TCGA-B0-4818-01 8 134072581 134072581 G C SLA 5'UTR 0.17 TCGA-B0-4818-01 8 97316399 97316399 T A PTDSS1 Missense_Mutation p.I295N 0.19 deleterious(0) probably_damaging(0.98) TCGA-B0-4818-01 9 100234634 100234634 G C TDRD7 Missense_Mutation p.G601R 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-B0-4818-01 9 100234635 100234635 G T TDRD7 Missense_Mutation p.G601V 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-B0-4818-01 9 117840320 117840320 G T TNC Missense_Mutation p.S859Y 0.21 deleterious(0) probably_damaging(0.939) TCGA-B0-4818-01 9 13224388 13224388 G C MPDZ Missense_Mutation p.I126M 0.21 deleterious(0.01) probably_damaging(0.938) TCGA-B0-4818-01 9 32543675 32543675 G A TOPORS Missense_Mutation p.A283V 0.20 deleterious(0) probably_damaging(0.987) TCGA-B0-4818-01 9 70490099 70490099 G T CBWD5 5'UTR 0.18 TCGA-B0-4818-01 9 86571091 86571091 C G C9orf64 Missense_Mutation p.A109P 0.28 deleterious(0) probably_damaging(0.992) TCGA-B0-4818-01 X 129045756 129045756 A T UTP14A Silent p.V132V 0.18 TCGA-B0-4818-01 X 137793084 137793084 C A FGF13 Intron 0.25 TCGA-B0-4818-01 X 43515640 43515640 C T MAOA Silent p.V17V 0.06 TCGA-B0-4818-01 X 44108155 44108155 G T EFHC2 Missense_Mutation p.P289Q 0.23 deleterious(0) probably_damaging(0.913) TCGA-B0-4818-01 X 57367784 57367784 G A FAAH2 Missense_Mutation p.A235T 0.25 deleterious(0.02) probably_damaging(0.982) TCGA-B0-4818-01 X 70608627 70608627 G A TAF1 Missense_Mutation p.R890H 0.05 deleterious(0) probably_damaging(0.999) TCGA-B0-4821-01 10 101911766 101911766 G A ERLIN1 3'UTR 0.27 TCGA-B0-4821-01 10 123843471 123843471 C T TACC2 Missense_Mutation p.P486S 0.20 benign(0.004) TCGA-B0-4821-01 10 134896348 134896348 C T GPR123-AS1 3'Flank 0.31 TCGA-B0-4821-01 10 24834914 24834914 T C KIAA1217 Silent p.T1831T 0.26 TCGA-B0-4821-01 10 26562624 26562624 G A GAD2 Silent p.V384V 0.29 TCGA-B0-4821-01 11 119170255 119170255 C T CBL Missense_Mutation p.R829W 0.24 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-B0-4821-01 11 2924657 2924657 C G SLC22A18 Missense_Mutation p.L28V 0.17 tolerated(0.55) benign(0.163) TCGA-B0-4821-01 11 55798806 55798806 A T OR5AS1 Silent p.L304L 0.24 TCGA-B0-4821-01 11 62677036 62677036 C G CHRM1 3'UTR 0.33 TCGA-B0-4821-01 12 122213548 122213548 T C TMEM120B Missense_Mutation p.F314L 0.06 deleterious(0) probably_damaging(0.997) TCGA-B0-4821-01 12 4920583 4920583 C A KCNA6 Missense_Mutation p.S459Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-B0-4821-01 12 53877184 53877184 T C MAP3K12 Missense_Mutation p.K521R 0.36 tolerated(0.12) benign(0.395) TCGA-B0-4821-01 12 88482865 88482865 A T CEP290 Missense_Mutation p.L1325I 0.33 probably_damaging(0.998) TCGA-B0-4821-01 13 99100498 99100498 A T FARP1 Missense_Mutation p.E1022V 0.28 deleterious(0) probably_damaging(0.998) TCGA-B0-4821-01 14 47120312 47120312 G A RPL10L Missense_Mutation p.R210W 0.09 tolerated(0.19) benign(0) TCGA-B0-4821-01 15 32815271 32815271 C T RP11-632K20.7 RNA 0.35 TCGA-B0-4821-01 15 42986490 42986490 G A STARD9 Silent p.A4238A 0.33 TCGA-B0-4821-01 15 43016731 43016731 C G CDAN1 Missense_Mutation p.E1214D 0.21 tolerated(0.31) probably_damaging(0.969) TCGA-B0-4821-01 15 50878671 50878671 A C TRPM7 Silent p.S1468S 0.29 TCGA-B0-4821-01 15 75651073 75651073 C G MAN2C1 Missense_Mutation p.D757H 0.26 deleterious(0) probably_damaging(1) TCGA-B0-4821-01 15 86810227 86810227 G A AGBL1 Silent p.L540L 0.23 TCGA-B0-4821-01 15 96875713 96875713 C T NR2F2 Missense_Mutation p.H127Y 0.14 deleterious(0) probably_damaging(0.984) TCGA-B0-4821-01 16 109300 109301 GG - RHBDF1 Frame_Shift_Del p.P647Rfs*4 0.50 TCGA-B0-4821-01 16 65319122 65319122 G T LINC00922 RNA 0.32 TCGA-B0-4821-01 16 68055657 68055657 G A DDX28 Silent p.H483H 0.29 TCGA-B0-4821-01 16 84270767 84270767 G T KCNG4 Missense_Mutation p.Q109K 0.26 deleterious(0.03) benign(0.163) TCGA-B0-4821-01 16 84270768 84270768 G A KCNG4 Silent p.S108S 0.26 TCGA-B0-4821-01 17 10369696 10369696 T A MYH4 Missense_Mutation p.N81I 0.08 deleterious(0) probably_damaging(0.98) TCGA-B0-4821-01 17 18396156 18396156 C T LGALS9C Nonsense_Mutation p.R303* 0.20 TCGA-B0-4821-01 17 4624282 4624282 G C ARRB2 Missense_Mutation p.R414P 0.07 deleterious(0) probably_damaging(0.971) TCGA-B0-4821-01 17 8012578 8012578 C A ALOXE3 Silent p.P624P 0.11 TCGA-B0-4821-01 18 47488647 47488647 C T MYO5B Missense_Mutation p.E512K 0.24 deleterious(0) probably_damaging(1) TCGA-B0-4821-01 19 11132435 11132435 A G SMARCA4 Missense_Mutation p.H884R 0.22 benign(0.348) TCGA-B0-4821-01 19 17303628 17303628 T A MYO9B Missense_Mutation p.L962Q 0.22 deleterious(0.02) benign(0.128) TCGA-B0-4821-01 19 57766064 57766064 C T ZNF805 Missense_Mutation p.S626L 0.12 deleterious_low_confidence(0.05) benign(0.026) TCGA-B0-4821-01 1 115216686 115216686 G - AMPD1 Frame_Shift_Del p.L640Cfs*4 0.21 TCGA-B0-4821-01 1 151991182 151991182 A G NBPF18P RNA 0.09 TCGA-B0-4821-01 1 175335069 175335069 G A TNR Silent p.S753S 0.09 TCGA-B0-4821-01 1 178834359 178834359 G C ANGPTL1 Missense_Mutation p.L185V 0.32 tolerated(0.24) benign(0.012) TCGA-B0-4821-01 1 180063373 180063373 T A CEP350 Silent p.A2711A 0.23 TCGA-B0-4821-01 1 203465235 203465235 G A OPTC Missense_Mutation p.M34I 0.18 tolerated(0.44) benign(0.005) TCGA-B0-4821-01 1 24137256 24137256 T C HMGCL Silent p.E177E 0.35 TCGA-B0-4821-01 1 27660545 27660545 G A TMEM222 Missense_Mutation p.M136I 0.39 tolerated(0.09) benign(0.241) TCGA-B0-4821-01 1 52269624 52269625 AA - NRD1 Frame_Shift_Del p.F793* 0.16 TCGA-B0-4821-01 1 85403560 85403560 C A MCOLN2 Missense_Mutation p.V405L 0.37 tolerated(0.21) possibly_damaging(0.588) TCGA-B0-4821-01 20 31019245 31019245 C G ASXL1 Missense_Mutation p.F280L 0.06 deleterious(0.04) probably_damaging(0.996) TCGA-B0-4821-01 20 3275174 3275174 C G C20orf194 Missense_Mutation p.W707S 0.09 tolerated(0.52) benign(0.004) TCGA-B0-4821-01 20 42264641 42264641 C T IFT52 Silent p.T333T 0.18 TCGA-B0-4821-01 20 61473243 61473243 G A TCFL5 3'UTR 0.06 TCGA-B0-4821-01 21 10916424 10916424 G T TPTE Missense_Mutation p.L408I 0.11 tolerated(0.07) benign(0.285) TCGA-B0-4821-01 22 46804935 46804935 C G CELSR1 Silent p.L1728L 0.47 TCGA-B0-4821-01 2 176812254 176812259 CACATT - KIAA1715 In_Frame_Del p.N219_V220del 0.28 TCGA-B0-4821-01 2 197872639 197872639 A T ANKRD44 Missense_Mutation p.L649Q 0.26 deleterious(0) probably_damaging(1) TCGA-B0-4821-01 2 198949285 198949285 C T PLCL1 Silent p.I348I 0.12 TCGA-B0-4821-01 2 61515870 61515870 T C USP34 Missense_Mutation p.K1564R 0.06 tolerated(0.22) benign(0.039) TCGA-B0-4821-01 2 88747746 88747746 G A FOXI3 RNA 0.11 TCGA-B0-4821-01 3 133339115 133339115 C T TOPBP1 Silent p.V1085V 0.30 TCGA-B0-4821-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.17 tolerated(0.11) possibly_damaging(0.529) TCGA-B0-4821-01 3 47108558 47108559 - CT SETD2 Splice_Site p.X2037_splice 0.35 TCGA-B0-4821-01 4 110932679 110932679 A G EGF 3'UTR 0.29 TCGA-B0-4821-01 4 160235851 160235851 C T RAPGEF2 Silent p.L101L 0.16 TCGA-B0-4821-01 4 169176883 169176883 G A DDX60 Missense_Mutation p.S1179F 0.26 tolerated(0.14) possibly_damaging(0.635) TCGA-B0-4821-01 4 177245359 177245359 T G SPCS3 Missense_Mutation p.V82G 0.05 deleterious(0) probably_damaging(0.961) TCGA-B0-4821-01 5 161580311 161580311 C A GABRG2 Silent p.I495I 0.10 TCGA-B0-4821-01 5 178391958 178391958 A G ZNF454 Missense_Mutation p.K185E 0.21 deleterious(0.01) probably_damaging(1) TCGA-B0-4821-01 5 36105192 36105192 G C LMBRD2 Missense_Mutation p.P669A 0.06 tolerated(0.24) benign(0.007) TCGA-B0-4821-01 6 3154105 3154105 C T TUBB2A Missense_Mutation p.E444K 0.09 deleterious_low_confidence(0.03) unknown(0) TCGA-B0-4821-01 6 47976379 47976379 A G PTCHD4 Missense_Mutation p.F300L 0.14 tolerated(1) probably_damaging(0.977) TCGA-B0-4821-01 6 76713633 76713633 G A IMPG1 Silent p.D390D 0.26 TCGA-B0-4821-01 7 108212243 108212243 A G DNAJB9 Missense_Mutation p.K25E 0.27 tolerated(0.39) benign(0.004) TCGA-B0-4821-01 7 129663485 129663485 C T ZC3HC1 Missense_Mutation p.E367K 0.31 deleterious(0.03) probably_damaging(0.928) TCGA-B0-4821-01 7 149486687 149486687 A G SSPO Splice_Site 0.12 TCGA-B0-4821-01 7 15726064 15726064 C A MEOX2 5'UTR 0.40 TCGA-B0-4821-01 7 31614243 31614243 T C CCDC129 Missense_Mutation p.M188T 0.19 tolerated(1) benign(0) TCGA-B0-4821-01 7 44154912 44154912 C A POLD2 Missense_Mutation p.G411C 0.29 tolerated(0.06) benign(0.013) TCGA-B0-4821-01 7 48086064 48086064 G C C7orf57 Missense_Mutation p.A120P 0.09 deleterious(0.01) possibly_damaging(0.533) TCGA-B0-4821-01 7 70880913 70880914 - GA WBSCR17 Frame_Shift_Ins p.Y211Afs*6 0.42 TCGA-B0-4821-01 7 86468231 86468231 C T GRM3 Silent p.N467N 0.34 TCGA-B0-4821-01 8 52322094 52322094 G T PXDNL Missense_Mutation p.P697Q 0.45 deleterious(0) possibly_damaging(0.89) TCGA-B0-4821-01 9 107547874 107547874 G A ABCA1 Missense_Mutation p.P2150S 0.25 tolerated(0.13) benign(0.045) TCGA-B0-4821-01 9 114840971 114840971 C A SUSD1 Nonsense_Mutation p.E534* 0.37 TCGA-B0-4821-01 9 137803109 137803109 G T FCN1 Missense_Mutation p.S201R 0.35 tolerated(0.09) benign(0.003) TCGA-B0-4821-01 9 137803110 137803110 C A FCN1 Missense_Mutation p.S201I 0.35 deleterious(0.03) benign(0.093) TCGA-B0-4821-01 9 77442734 77442734 C G TRPM6 Missense_Mutation p.R267S 0.40 deleterious(0.01) benign(0.356) TCGA-B0-4821-01 9 98209208 98209208 T C PTCH1 Missense_Mutation p.S1444G 0.15 tolerated_low_confidence(0.08) benign(0.011) TCGA-B0-4821-01 X 100809290 100809290 C A ARMCX1 3'UTR 0.30 TCGA-B0-4821-01 X 14882969 14882969 C T FANCB Missense_Mutation p.V222I 0.27 tolerated(0.81) benign(0.006) TCGA-B0-4821-01 X 26157291 26157291 G A MAGEB18 Silent p.A63A 0.33 TCGA-B0-4821-01 X 50376617 50376617 C T SHROOM4 Missense_Mutation p.R819K 0.31 tolerated(0.16) possibly_damaging(0.764) TCGA-B0-4821-01 X 64953049 64953049 A G MSN Silent p.L234L 0.27 TCGA-B0-4821-01 X 75649762 75649762 G A MAGEE1 Missense_Mutation p.R480Q 0.24 tolerated(1) benign(0.002) TCGA-B0-4821-01 X 9864239 9864239 C T SHROOM2 Missense_Mutation p.S764L 0.41 deleterious(0) probably_damaging(0.94) TCGA-B0-4823-01 10 101157182 101157182 C T GOT1 3'UTR 0.28 TCGA-B0-4823-01 10 103899302 103899302 T A PPRC1 Missense_Mutation p.L346Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-B0-4823-01 10 26414398 26414398 G A MYO3A Missense_Mutation p.G659R 0.34 deleterious(0) probably_damaging(0.994) TCGA-B0-4823-01 10 27301965 27301967 GTG - ANKRD26 In_Frame_Del p.T1600del 0.41 TCGA-B0-4823-01 10 5948166 5948166 T C FBXO18 Silent p.S159S 0.31 TCGA-B0-4823-01 11 102742668 102742668 G C MMP12 RNA 0.34 TCGA-B0-4823-01 11 104971490 104971490 C - CARD17 Frame_Shift_Del p.K9Rfs*14 0.26 TCGA-B0-4823-01 11 113607443 113607443 G T ZW10 Missense_Mutation p.N706K 0.24 tolerated(0.06) benign(0.056) TCGA-B0-4823-01 11 63059039 63059039 C A SLC22A10 Missense_Mutation p.L144M 0.14 deleterious(0.03) possibly_damaging(0.902) TCGA-B0-4823-01 11 63682222 63682222 T C RCOR2 Missense_Mutation p.T129A 0.25 deleterious(0) possibly_damaging(0.751) TCGA-B0-4823-01 11 64088367 64088367 T G PRDX5 Missense_Mutation p.F157V 0.26 deleterious(0) probably_damaging(0.998) TCGA-B0-4823-01 11 64111946 64111946 G T CCDC88B Missense_Mutation p.G645C 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.625) TCGA-B0-4823-01 11 6621253 6621253 C T RRP8 3'UTR 0.31 TCGA-B0-4823-01 11 8728751 8728751 G A ST5 Missense_Mutation p.R818W 0.06 deleterious(0) probably_damaging(0.996) TCGA-B0-4823-01 12 14689601 14689601 T A PLBD1 Missense_Mutation p.D201V 0.21 deleterious(0) probably_damaging(1) TCGA-B0-4823-01 12 518533 518533 G - CCDC77 Splice_Site 0.27 TCGA-B0-4823-01 12 52374824 52374824 T A ACVR1B Missense_Mutation p.F218I 0.42 deleterious(0) probably_damaging(0.999) TCGA-B0-4823-01 12 52967395 52967395 T A KRT74 Missense_Mutation p.N56I 0.22 deleterious(0.03) benign(0.004) TCGA-B0-4823-01 12 52967397 52967397 C A KRT74 Silent p.G55G 0.20 TCGA-B0-4823-01 12 53453510 53453510 G C TENC1 Missense_Mutation p.E705D 0.38 tolerated(0.18) probably_damaging(0.995) TCGA-B0-4823-01 12 53837461 53837461 A G PRR13 Silent p.A102A 0.21 TCGA-B0-4823-01 12 62892790 62892790 T - MON2 Frame_Shift_Del p.F177Lfs*15 0.23 TCGA-B0-4823-01 12 6471375 6471375 C T SCNN1A Silent p.Q298Q 0.03 TCGA-B0-4823-01 12 675059 675059 T C NINJ2 Intron 0.62 TCGA-B0-4823-01 12 9000255 9000255 C A A2ML1 Silent p.V598V 0.38 TCGA-B0-4823-01 12 9316306 9316306 C G PZP Missense_Mutation p.E898D 0.37 tolerated(0.1) probably_damaging(0.931) TCGA-B0-4823-01 12 96421288 96421288 A G LTA4H Silent p.A115A 0.20 TCGA-B0-4823-01 13 114018185 114018185 C A GRTP1 Missense_Mutation p.D25Y 0.15 tolerated(1) benign(0) TCGA-B0-4823-01 13 20567391 20567391 T A ZMYM2 Missense_Mutation p.V60D 0.21 tolerated_low_confidence(0.09) probably_damaging(0.998) TCGA-B0-4823-01 13 76431981 76431981 T C LMO7 Intron 0.21 TCGA-B0-4823-01 14 105416511 105416511 G C AHNAK2 Silent p.P1759P 0.55 TCGA-B0-4823-01 14 105930474 105930474 G C MTA1 Missense_Mutation p.E394D 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-B0-4823-01 14 23872974 23872974 C T MYH6 Missense_Mutation p.R250K 0.30 deleterious(0.01) possibly_damaging(0.642) TCGA-B0-4823-01 14 60977812 60977812 C G SIX6 Missense_Mutation p.Q195E 0.26 tolerated(0.53) benign(0.005) TCGA-B0-4823-01 14 74454758 74454758 A G ENTPD5 Silent p.C16C 0.19 TCGA-B0-4823-01 15 78838990 78838990 T GCAAAG PSMA4 Frame_Shift_Ins p.I194Sfs*6 0.15 TCGA-B0-4823-01 15 91517903 91517903 A T PRC1 Missense_Mutation p.F421Y 0.26 deleterious(0) probably_damaging(1) TCGA-B0-4823-01 16 12758696 12758696 A C CPPED1 3'UTR 0.30 TCGA-B0-4823-01 16 2115579 2115579 C T TSC2 Silent p.Y553Y 0.28 TCGA-B0-4823-01 16 48256589 48256589 T A ABCC11 Missense_Mutation p.R233W 0.32 deleterious(0.01) probably_damaging(1) TCGA-B0-4823-01 16 57104485 57104485 C G NLRC5 Missense_Mutation p.A1541G 0.24 tolerated(0.38) benign(0.112) TCGA-B0-4823-01 16 68112666 68112666 A C DUS2 Missense_Mutation p.K420T 0.24 deleterious(0) probably_damaging(0.996) TCGA-B0-4823-01 16 68283194 68283194 C T PLA2G15 Silent p.V43V 0.28 TCGA-B0-4823-01 17 16120578 16120578 T C PIGL Missense_Mutation p.V13A 0.18 deleterious(0.03) benign(0.184) TCGA-B0-4823-01 17 38243108 38243108 T A THRA Splice_Site p.X241_splice 0.28 TCGA-B0-4823-01 17 40476790 40476790 G A STAT3 Silent p.S513S 0.19 TCGA-B0-4823-01 17 43318890 43318890 C A FMNL1 Missense_Mutation p.L492M 0.38 tolerated(0.11) unknown(0) TCGA-B0-4823-01 17 48191795 48191795 G T SAMD14 Missense_Mutation p.L278M 0.24 tolerated(0.2) benign(0.348) TCGA-B0-4823-01 17 65909128 65909128 A T BPTF Nonsense_Mutation p.K1710* 0.36 TCGA-B0-4823-01 18 31311969 31311969 C G ASXL3 Missense_Mutation p.A306G 0.24 probably_damaging(0.913) TCGA-B0-4823-01 18 34833794 34833794 C G CELF4 Missense_Mutation p.D481H 0.23 deleterious(0.02) possibly_damaging(0.907) TCGA-B0-4823-01 19 15072683 15072683 G A SLC1A6 Intron 0.24 TCGA-B0-4823-01 19 16634081 16634081 G T CHERP Missense_Mutation p.H588N 0.24 deleterious_low_confidence(0.02) benign(0.119) TCGA-B0-4823-01 19 16799123 16799140 AAGTCCAAGGAGGAGTTG - TMEM38A In_Frame_Del p.K281_L286del 0.25 TCGA-B0-4823-01 19 2934740 2934740 G C ZNF77 Missense_Mutation p.L129V 0.24 deleterious(0.04) possibly_damaging(0.737) TCGA-B0-4823-01 19 50413125 50413125 C A NUP62 5'UTR 0.23 TCGA-B0-4823-01 1 1153053 1153053 T C SDF4 Missense_Mutation p.M310V 0.24 tolerated(0.05) benign(0.146) TCGA-B0-4823-01 1 12409404 12409404 T G VPS13D Missense_Mutation p.M3135R 0.26 benign(0) TCGA-B0-4823-01 1 186275897 186275897 A G PRG4 Missense_Mutation p.E349G 0.25 unknown(0) TCGA-B0-4823-01 1 215820889 215820889 C T USH2A Nonsense_Mutation p.W4922* 0.29 TCGA-B0-4823-01 1 218458677 218458677 G C RRP15 Missense_Mutation p.D7H 0.26 deleterious_low_confidence(0) benign(0.417) TCGA-B0-4823-01 1 223408259 223408260 - A SUSD4 Intron 0.25 TCGA-B0-4823-01 1 33360935 33360935 G A TMEM54 Missense_Mutation p.P189S 0.19 deleterious(0.01) probably_damaging(1) TCGA-B0-4823-01 1 36372683 36372683 C T AGO1 Silent p.L515L 0.25 TCGA-B0-4823-01 1 44085866 44085866 C G PTPRF Missense_Mutation p.L1738V 0.24 deleterious(0) probably_damaging(0.998) TCGA-B0-4823-01 1 63021612 63021612 C T DOCK7 Missense_Mutation p.R827Q 0.25 tolerated(0.64) benign(0.035) TCGA-B0-4823-01 20 2637724 2637724 C G NOP56 Intron 0.29 TCGA-B0-4823-01 20 30671834 30671834 G A HCK Missense_Mutation p.D224N 0.29 tolerated(0.19) benign(0.006) TCGA-B0-4823-01 20 31386266 31386266 G T DNMT3B Silent p.R497R 0.21 TCGA-B0-4823-01 20 33147238 33147238 G T MAP1LC3A Nonsense_Mutation p.E66* 0.20 TCGA-B0-4823-01 20 3677901 3677901 G C SIGLEC1 Silent p.G737G 0.29 TCGA-B0-4823-01 20 37356752 37356752 C T SLC32A1 Missense_Mutation p.L350F 0.25 tolerated(0.78) benign(0.048) TCGA-B0-4823-01 20 62337758 62337758 A T ARFRP1 Missense_Mutation p.M72K 0.03 tolerated(1) benign(0.021) TCGA-B0-4823-01 21 45993662 45993662 C G KRTAP10-4 Missense_Mutation p.S9R 0.26 deleterious(0) probably_damaging(0.986) TCGA-B0-4823-01 22 32875201 32875201 A C FBXO7 Missense_Mutation p.Q119P 0.26 tolerated(0.16) benign(0.009) TCGA-B0-4823-01 22 37603247 37603247 G A SSTR3 Missense_Mutation p.A199V 0.27 tolerated(0.41) benign(0.172) TCGA-B0-4823-01 2 138208421 138208421 T G THSD7B Missense_Mutation p.I989S 0.25 deleterious(0) benign(0) TCGA-B0-4823-01 2 152522601 152522602 - A NEB Intron 0.23 TCGA-B0-4823-01 2 1647244 1647244 C G PXDN Missense_Mutation p.R1283P 0.28 deleterious(0.01) possibly_damaging(0.763) TCGA-B0-4823-01 2 179481863 179481863 G T TTN Silent p.T15953T 0.31 TCGA-B0-4823-01 2 188349545 188349545 T G TFPI Missense_Mutation p.E176D 0.22 tolerated(0.13) benign(0.12) TCGA-B0-4823-01 2 196753118 196753118 A T DNAH7 Nonsense_Mutation p.L1757* 0.22 TCGA-B0-4823-01 2 225661099 225661099 T C DOCK10 Silent p.G1624G 0.17 TCGA-B0-4823-01 2 238267874 238267874 C G COL6A3 Missense_Mutation p.G2110A 0.28 probably_damaging(0.987) TCGA-B0-4823-01 2 241976725 241976725 C T SNED1 Missense_Mutation p.R334C 0.26 tolerated(0.06) possibly_damaging(0.631) TCGA-B0-4823-01 2 27346840 27346840 C G ABHD1 Silent p.P8P 0.24 TCGA-B0-4823-01 2 89036070 89036070 C T RPIA Silent p.L205L 0.21 TCGA-B0-4823-01 3 10188204 10188205 TT - VHL Frame_Shift_Del p.W117Afs*14 0.35 TCGA-B0-4823-01 3 127325478 127325478 C A MCM2 Missense_Mutation p.R307S 0.35 deleterious(0) probably_damaging(0.933) TCGA-B0-4823-01 3 168802758 168802758 C T MECOM Nonsense_Mutation p.W1097* 0.36 TCGA-B0-4823-01 3 184049133 184049133 G C EIF4G1 Missense_Mutation p.G1421A 0.46 tolerated(0.1) benign(0.001) TCGA-B0-4823-01 3 192516184 192516184 T A MB21D2 Missense_Mutation p.K489N 0.35 deleterious(0) probably_damaging(0.997) TCGA-B0-4823-01 3 77695237 77695237 G A ROBO2 3'UTR 0.41 TCGA-B0-4823-01 4 129812271 129812271 T G SCLT1 Missense_Mutation p.K617N 0.21 deleterious(0) probably_damaging(0.999) TCGA-B0-4823-01 4 139980658 139980658 T C ELF2 Missense_Mutation p.T409A 0.30 tolerated(0.49) benign(0.003) TCGA-B0-4823-01 4 15818217 15818217 A G CD38 Missense_Mutation p.Y106C 0.29 deleterious(0) probably_damaging(1) TCGA-B0-4823-01 4 17517125 17517125 G A CLRN2 Missense_Mutation p.R79H 0.05 deleterious(0.02) possibly_damaging(0.845) TCGA-B0-4823-01 4 48887464 48887464 G A OCIAD2 3'UTR 0.27 TCGA-B0-4823-01 4 70464995 70464995 A C UGT2A1 Missense_Mutation p.L488W 0.28 deleterious(0) probably_damaging(0.996) TCGA-B0-4823-01 4 73941870 73941870 G T ANKRD17 3'UTR 0.23 TCGA-B0-4823-01 4 77677855 77677855 G A SHROOM3 Missense_Mutation p.V1655I 0.29 tolerated(0.31) benign(0.021) TCGA-B0-4823-01 5 1073766 1073766 C T SLC12A7 Silent p.E741E 0.46 TCGA-B0-4823-01 5 132228042 132228042 C T AFF4 Silent p.G817G 0.22 TCGA-B0-4823-01 5 153755895 153755895 T G GALNT10 Silent p.L209L 0.43 TCGA-B0-4823-01 5 31538683 31538683 G T C5orf22 Missense_Mutation p.A232S 0.24 tolerated(0.8) benign(0.004) TCGA-B0-4823-01 5 70928000 70928000 A G MCCC2 Missense_Mutation p.D264G 0.41 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-B0-4823-01 6 123545248 123545248 C T TRDN Silent p.K668K 0.24 TCGA-B0-4823-01 6 127652111 127652111 T - ECHDC1 Frame_Shift_Del p.G28Dfs*16 0.30 TCGA-B0-4823-01 6 131179363 131179363 C T EPB41L2 Silent p.R977R 0.25 TCGA-B0-4823-01 6 149838586 149838586 C A PPIL4 Missense_Mutation p.G328V 0.29 deleterious(0) probably_damaging(0.957) TCGA-B0-4823-01 6 17764666 17764666 G - KIF13A Frame_Shift_Del p.S1698Yfs*5 0.23 TCGA-B0-4823-01 6 36938212 36938212 A G MTCH1 Missense_Mutation p.V314A 0.24 deleterious(0.05) benign(0.069) TCGA-B0-4823-01 7 104758212 104758212 A - SRPK2 3'UTR 0.30 TCGA-B0-4823-01 7 129663471 129663471 G - ZC3HC1 Frame_Shift_Del p.T372Pfs*7 0.33 TCGA-B0-4823-01 7 150748965 150748965 C T ASIC3 Missense_Mutation p.A428V 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-B0-4823-01 7 155094505 155094505 A G INSIG1 Missense_Mutation p.I251M 0.27 deleterious(0) probably_damaging(1) TCGA-B0-4823-01 7 23240190 23240190 T A NUPL2 Missense_Mutation p.N366K 0.25 tolerated(0.16) benign(0.01) TCGA-B0-4823-01 7 30486629 30486629 A T NOD1 Missense_Mutation p.Y775N 0.27 tolerated(0.18) probably_damaging(0.999) TCGA-B0-4823-01 7 35051062 35051083 CCTATTTTAAAAAATACAGAGG - DPY19L1 Splice_Site p.X111_splice 0.23 TCGA-B0-4823-01 7 42964387 42964387 C A PSMA2 Silent p.V87V 0.19 TCGA-B0-4823-01 7 79082436 79082436 C A MAGI2 Silent p.L67L 0.31 TCGA-B0-4823-01 7 89937153 89937153 C T C7orf63 Silent p.N845N 0.31 TCGA-B0-4823-01 8 102381717 102381717 C T NACAP1 RNA 0.26 TCGA-B0-4823-01 8 143425602 143425602 G T TSNARE1 Missense_Mutation p.P157H 0.31 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-B0-4823-01 8 144940732 144940732 C T EPPK1 Silent p.L2230L 0.06 TCGA-B0-4823-01 8 145540325 145540325 G C DGAT1 Silent p.G453G 0.18 TCGA-B0-4823-01 8 25325823 25325823 C A CDCA2 Missense_Mutation p.S210Y 0.29 tolerated(1) possibly_damaging(0.576) TCGA-B0-4823-01 8 39836668 39836668 G C IDO2 Missense_Mutation p.G106A 0.38 tolerated(0.39) possibly_damaging(0.854) TCGA-B0-4823-01 8 41552240 41552240 A C ANK1 Missense_Mutation p.M1107R 0.24 deleterious(0) probably_damaging(0.967) TCGA-B0-4823-01 8 61761689 61761689 C A CHD7 Missense_Mutation p.L1794I 0.23 probably_damaging(0.984) TCGA-B0-4823-01 9 107651383 107651383 A T ABCA1 Missense_Mutation p.C54S 0.21 deleterious(0.01) probably_damaging(0.925) TCGA-B0-4823-01 9 131390202 131390217 AGGACATACCTCCTCG - SPTAN1 Splice_Site p.X2230_splice 0.23 TCGA-B0-4823-01 9 139369004 139369006 TTT - SEC16A In_Frame_Del p.Q1021_S1022delinsR 0.35 TCGA-B0-4823-01 9 139722995 139722995 G A RABL6 Silent p.Q121Q 0.14 TCGA-B0-4823-01 9 140002045 140002045 C T MAN1B1 Silent p.R609R 0.17 TCGA-B0-4823-01 9 86616068 86616068 G T RMI1 Missense_Mutation p.W56L 0.26 deleterious(0) probably_damaging(0.997) TCGA-B0-4823-01 9 86616070 86616070 C T RMI1 Missense_Mutation p.L57F 0.26 deleterious(0) probably_damaging(1) TCGA-B0-4823-01 X 15402054 15402054 C A FIGF Missense_Mutation p.W5C 0.53 tolerated(0.08) benign(0.048) TCGA-B0-4823-01 X 48681371 48681371 G A HDAC6 Silent p.K854K 0.59 TCGA-B0-4823-01 X 64959621 64959621 G T MSN Missense_Mutation p.D534Y 0.06 tolerated(0.24) possibly_damaging(0.739) TCGA-B0-4827-01 10 116417921 116417922 - AAAA ABLIM1 Frame_Shift_Ins p.L13Ffs*6 0.26 TCGA-B0-4827-01 10 93768666 93768666 T G BTAF1 Silent p.T1298T 0.17 TCGA-B0-4827-01 11 33566496 33566496 C G KIAA1549L Missense_Mutation p.T689R 0.23 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-B0-4827-01 11 34378374 34378374 C A ABTB2 Missense_Mutation p.D253Y 0.22 deleterious(0.01) benign(0.08) TCGA-B0-4827-01 11 4903629 4903629 C T OR51T1 Missense_Mutation p.T194I 0.20 deleterious(0.01) benign(0.318) TCGA-B0-4827-01 11 57076184 57076184 A T TNKS1BP1 Missense_Mutation p.L1334Q 0.18 tolerated(0.14) benign(0.069) TCGA-B0-4827-01 11 65271716 65271716 C T MALAT1 RNA 0.08 TCGA-B0-4827-01 11 6897950 6897950 T G OR10A4 Silent p.L24L 0.20 TCGA-B0-4827-01 11 73008585 73008585 A T P2RY6 3'UTR 0.20 TCGA-B0-4827-01 12 104171814 104171814 G T NT5DC3 Missense_Mutation p.F480L 0.19 deleterious(0) probably_damaging(0.999) TCGA-B0-4827-01 12 109826583 109826583 C T MYO1H Silent p.D20D 0.17 TCGA-B0-4827-01 12 117672492 117672492 A T NOS1 Missense_Mutation p.L1072Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-B0-4827-01 12 121002894 121002894 G T RNF10 Missense_Mutation p.R562I 0.16 deleterious(0) possibly_damaging(0.834) TCGA-B0-4827-01 12 53708552 53708552 A T AAAS Silent p.R176R 0.10 TCGA-B0-4827-01 12 56121064 56121064 G A CD63 Silent p.T42T 0.11 TCGA-B0-4827-01 12 6309604 6309604 T G CD9 5'UTR 0.20 TCGA-B0-4827-01 12 66638963 66638963 G A IRAK3 Missense_Mutation p.R412Q 0.23 tolerated(0.39) benign(0.041) TCGA-B0-4827-01 13 25281239 25281239 G A ATP12A Missense_Mutation p.G756R 0.19 deleterious(0) probably_damaging(1) TCGA-B0-4827-01 13 37567752 37567752 G C ALG5 Missense_Mutation p.Q115E 0.14 tolerated(0.34) benign(0.008) TCGA-B0-4827-01 14 101201286 101201286 T C DLK1 3'UTR 0.18 TCGA-B0-4827-01 14 74757105 74757105 C G ABCD4 Missense_Mutation p.D406H 0.21 deleterious(0) possibly_damaging(0.738) TCGA-B0-4827-01 15 43873430 43873430 A G PPIP5K1 Missense_Mutation p.F312L 0.15 deleterious(0.02) probably_damaging(0.983) TCGA-B0-4827-01 15 72542434 72542434 C T PARP6 Splice_Site p.X473_splice 0.08 TCGA-B0-4827-01 16 20871576 20871576 A G DCUN1D3 Missense_Mutation p.Y183H 0.18 deleterious(0) probably_damaging(1) TCGA-B0-4827-01 16 30734516 30734516 C T SRCAP Silent p.L1375L 0.15 TCGA-B0-4827-01 16 55565881 55565881 A T LPCAT2 Missense_Mutation p.K233I 0.16 deleterious(0) probably_damaging(0.999) TCGA-B0-4827-01 16 67778202 67778202 C T RANBP10 Missense_Mutation p.G186D 0.20 deleterious(0) probably_damaging(1) TCGA-B0-4827-01 16 68208354 68208354 A G NFATC3 Missense_Mutation p.M618V 0.15 tolerated(0.13) benign(0.001) TCGA-B0-4827-01 16 89865333 89865333 G A FANCA Intron 0.28 TCGA-B0-4827-01 17 10535165 10535165 C A MYH3 Missense_Mutation p.D1709Y 0.15 deleterious(0) possibly_damaging(0.824) TCGA-B0-4827-01 17 56599131 56599131 A T SEPT4 Missense_Mutation p.L309Q 0.05 deleterious(0) possibly_damaging(0.907) TCGA-B0-4827-01 17 63149596 63149596 C A RGS9 Missense_Mutation p.N38K 0.10 tolerated(0.13) benign(0.038) TCGA-B0-4827-01 17 65735643 65735643 G C NOL11 Missense_Mutation p.K618N 0.13 deleterious(0.01) benign(0.034) TCGA-B0-4827-01 17 66422217 66422217 G A WIPI1 Missense_Mutation p.P431L 0.17 deleterious(0.03) probably_damaging(1) TCGA-B0-4827-01 17 67189998 67189998 A T ABCA10 Missense_Mutation p.F493Y 0.16 deleterious(0.01) possibly_damaging(0.85) TCGA-B0-4827-01 17 73519837 73519837 C G TSEN54 Silent p.P469P 0.15 TCGA-B0-4827-01 17 73945335 73945336 AG - ACOX1 Frame_Shift_Del p.L564Vfs*44 0.17 TCGA-B0-4827-01 17 7405412 7405412 T C POLR2A Missense_Mutation p.I848T 0.13 probably_damaging(1) TCGA-B0-4827-01 19 15839672 15839672 C T OR10H2 Silent p.T273T 0.17 TCGA-B0-4827-01 19 1807166 1807166 C T ATP8B3 Splice_Site p.X205_splice 0.16 TCGA-B0-4827-01 19 362387 362387 T A THEG Missense_Mutation p.D318V 0.12 deleterious(0.02) benign(0.28) TCGA-B0-4827-01 19 39360340 39360340 G C RINL Silent p.P449P 0.17 TCGA-B0-4827-01 19 40742001 40742001 T C AKT2 Missense_Mutation p.D324G 0.07 tolerated(0.07) probably_damaging(1) TCGA-B0-4827-01 19 41594410 41594410 C T CYP2A13 Silent p.L12L 0.24 TCGA-B0-4827-01 19 51362940 51362940 G A KLK3 Intron 0.17 TCGA-B0-4827-01 19 757806 757806 C T MISP Missense_Mutation p.T287I 0.15 tolerated(0.34) benign(0.079) TCGA-B0-4827-01 19 9066745 9066745 G T MUC16 Missense_Mutation p.Q6901K 0.18 unknown(0) TCGA-B0-4827-01 1 11188164 11188164 G T MTOR Missense_Mutation p.T1977K 0.34 deleterious(0) probably_damaging(0.986) TCGA-B0-4827-01 1 119965210 119965210 G A HSD3B2 Silent p.R362R 0.05 TCGA-B0-4827-01 1 151001376 151001376 C T PRUNE Missense_Mutation p.R297W 0.18 deleterious(0) probably_damaging(0.993) TCGA-B0-4827-01 1 151751219 151751219 A G TDRKH Silent p.S275S 0.20 TCGA-B0-4827-01 1 16259441 16259441 C T SPEN Missense_Mutation p.P2236S 0.31 benign(0.004) TCGA-B0-4827-01 1 186136027 186136027 G A HMCN1 Missense_Mutation p.R5176H 0.18 benign(0.002) TCGA-B0-4827-01 1 43905719 43905719 G A SZT2 Missense_Mutation p.G2347R 0.16 tolerated(0.11) probably_damaging(0.978) TCGA-B0-4827-01 20 39798840 39798840 C T PLCG1 Silent p.A913A 0.12 TCGA-B0-4827-01 20 5843933 5843933 G T C20orf196 Missense_Mutation p.A148S 0.22 deleterious(0.02) probably_damaging(0.981) TCGA-B0-4827-01 20 60718863 60718863 C T SS18L1 5'UTR 0.16 TCGA-B0-4827-01 20 62607109 62607109 C T SAMD10 Silent p.V174V 0.26 TCGA-B0-4827-01 21 37518699 37518699 C A CBR3 Silent p.I241I 0.16 TCGA-B0-4827-01 2 15608562 15608568 TAATCCA - NBAS Frame_Shift_Del p.Y605* 0.16 TCGA-B0-4827-01 2 166183424 166183424 T G SCN2A Missense_Mutation p.D693E 0.21 tolerated(0.55) benign(0.013) TCGA-B0-4827-01 2 207170060 207170060 G T ZDBF2 Missense_Mutation p.V270F 0.17 deleterious(0.01) benign(0.403) TCGA-B0-4827-01 2 234775439 234775439 T A MSL3P1 RNA 0.17 TCGA-B0-4827-01 2 26029201 26029201 G A ASXL2 Missense_Mutation p.T50I 0.28 deleterious(0) probably_damaging(0.987) TCGA-B0-4827-01 2 69650751 69650751 G TA NFU1 Frame_Shift_Ins p.P89Yfs*13 0.19 TCGA-B0-4827-01 2 8919170 8919170 G T KIDINS220 Silent p.R824R 0.14 TCGA-B0-4827-01 3 10191479 10191479 C G VHL Missense_Mutation p.L158V 0.17 deleterious(0) possibly_damaging(0.656) TCGA-B0-4827-01 3 124303724 124303724 C T KALRN Missense_Mutation p.A19V 0.17 tolerated_low_confidence(0.2) benign(0) TCGA-B0-4827-01 3 170185029 170185029 G A SLC7A14 Silent p.Y710Y 0.20 TCGA-B0-4827-01 3 184689536 184689536 G A VPS8 Missense_Mutation p.R1139H 0.16 deleterious(0) probably_damaging(0.937) TCGA-B0-4827-01 3 48474087 48474087 G C CCDC51 Missense_Mutation p.Q323E 0.20 deleterious(0.03) benign(0.154) TCGA-B0-4827-01 3 48474088 48474088 C T CCDC51 Silent p.E322E 0.20 TCGA-B0-4827-01 3 52439864 52439864 T - BAP1 Frame_Shift_Del p.E283Gfs*52 0.22 TCGA-B0-4827-01 3 53845422 53845422 A T CACNA1D Missense_Mutation p.T2179S 0.22 tolerated_low_confidence(0.47) benign(0.073) TCGA-B0-4827-01 4 109571845 109571845 C - OSTC Frame_Shift_Del p.L12Sfs*6 0.17 TCGA-B0-4827-01 4 115769372 115769372 A C NDST4 Missense_Mutation p.W647G 0.16 deleterious(0) probably_damaging(0.969) TCGA-B0-4827-01 4 154216562 154216562 C A TRIM2 Missense_Mutation p.T295N 0.16 deleterious(0) benign(0.103) TCGA-B0-4827-01 4 186188308 186188308 A T SNX25 Missense_Mutation p.R200W 0.17 deleterious(0) probably_damaging(1) TCGA-B0-4827-01 5 65458025 65458025 C G SREK1 Missense_Mutation p.P167R 0.14 deleterious(0.04) possibly_damaging(0.8) TCGA-B0-4827-01 5 68607025 68607025 C - CCDC125 Frame_Shift_Del p.E125Kfs*3 0.17 TCGA-B0-4827-01 5 72333026 72333026 A G FCHO2 Missense_Mutation p.K300E 0.12 deleterious(0.02) possibly_damaging(0.476) TCGA-B0-4827-01 6 117677884 117677884 G T ROS1 Missense_Mutation p.P1350Q 0.18 deleterious(0) probably_damaging(0.985) TCGA-B0-4827-01 6 125233396 125233396 A T RP11-510H23.1 RNA 0.16 TCGA-B0-4827-01 6 36569828 36569828 G - SRSF3 3'UTR 0.20 TCGA-B0-4827-01 6 90388338 90388338 A C MDN1 Missense_Mutation p.F4131C 0.20 probably_damaging(0.962) TCGA-B0-4827-01 7 11078422 11078422 T G PHF14 Missense_Mutation p.N672K 0.14 tolerated(0.08) possibly_damaging(0.796) TCGA-B0-4827-01 7 120911339 120911339 G A CPED1 Missense_Mutation p.S908N 0.12 tolerated(0.26) benign(0.015) TCGA-B0-4827-01 7 142568043 142568043 T G EPHB6 Missense_Mutation p.L895W 0.23 deleterious(0) probably_damaging(1) TCGA-B0-4827-01 7 150945693 150945693 C A SMARCD3 5'UTR 0.16 TCGA-B0-4827-01 7 2946320 2946320 G C CARD11 Missense_Mutation p.I1139M 0.14 deleterious(0) probably_damaging(0.975) TCGA-B0-4827-01 7 89891285 89891285 T - C7orf63 Frame_Shift_Del p.F91Lfs*4 0.19 TCGA-B0-4827-01 7 91668040 91668040 C G AKAP9 Nonsense_Mutation p.S1549* 0.22 TCGA-B0-4827-01 7 92085934 92085934 A G GATAD1 3'UTR 0.22 TCGA-B0-4827-01 8 73848635 73848635 T C KCNB2 Missense_Mutation p.F349L 0.19 deleterious(0) probably_damaging(0.999) TCGA-B0-4827-01 9 100286582 100286582 G A TMOD1 Missense_Mutation p.D38N 0.22 deleterious(0) probably_damaging(0.999) TCGA-B0-4827-01 9 125273078 125273078 A T OR1J2 5'Flank 0.14 TCGA-B0-4827-01 9 127690521 127690521 G A GOLGA1 Silent p.A115A 0.21 TCGA-B0-4827-01 9 35078167 35078167 A T FANCG Missense_Mutation p.L161M 0.18 tolerated(0.22) possibly_damaging(0.62) TCGA-B0-4827-01 9 36376116 36376116 A T RNF38 Missense_Mutation p.D57E 0.17 tolerated(0.94) benign(0.057) TCGA-B0-4827-01 9 4663275 4663275 T G PPAPDC2 3'UTR 0.16 TCGA-B0-4827-01 9 6013437 6013437 T G RANBP6 Missense_Mutation p.H724P 0.19 deleterious(0) probably_damaging(0.993) TCGA-B0-4827-01 9 99797965 99797965 C G CTSV Missense_Mutation p.C211S 0.06 deleterious(0) possibly_damaging(0.884) TCGA-B0-4827-01 X 106092530 106092530 G A TBC1D8B Intron 0.28 TCGA-B0-4827-01 X 135431578 135431578 A T GPR112 Missense_Mutation p.N1905Y 0.16 deleterious(0) possibly_damaging(0.726) TCGA-B0-4827-01 X 140994211 140994211 C T MAGEC1 Missense_Mutation p.P341S 0.18 tolerated_low_confidence(0.15) possibly_damaging(0.641) TCGA-B0-4827-01 X 19378823 19378823 A T MAP3K15 3'UTR 0.22 TCGA-B0-4827-01 X 24228654 24228654 G A ZFX Missense_Mutation p.E527K 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-B0-4827-01 X 83724059 83724059 T C HDX Silent p.P224P 0.19 TCGA-B0-4842-01 10 17165609 17165610 - A CUBN Frame_Shift_Ins p.C156Lfs*15 0.13 TCGA-B0-4842-01 10 70507323 70507324 GG T CCAR1 Splice_Site p.X276_splice 0.11 TCGA-B0-4842-01 11 21250960 21250960 C T NELL1 Silent p.T503T 0.14 TCGA-B0-4842-01 11 4790883 4790883 A T OR51F1 Missense_Mutation p.F89I 0.18 deleterious(0.01) possibly_damaging(0.685) TCGA-B0-4842-01 11 65365829 65365830 - G MAP3K11 Frame_Shift_Ins p.Q826Pfs*36 0.23 TCGA-B0-4842-01 11 66625477 66625477 G C LRFN4 Missense_Mutation p.G88R 0.05 tolerated(0.67) benign(0.143) TCGA-B0-4842-01 12 124371778 124371778 C G DNAH10 Missense_Mutation p.N2853K 0.09 benign(0.129) TCGA-B0-4842-01 12 50821653 50821653 T A LARP4 Missense_Mutation p.W43R 0.12 deleterious(0) probably_damaging(0.999) TCGA-B0-4842-01 12 51450212 51450212 C G LETMD1 Missense_Mutation p.T294S 0.14 tolerated(0.75) benign(0.007) TCGA-B0-4842-01 13 70681442 70681442 C A KLHL1 Silent p.V130V 0.10 TCGA-B0-4842-01 16 29853112 29853112 C A MVP Missense_Mutation p.P463T 0.09 deleterious(0) probably_damaging(0.994) TCGA-B0-4842-01 16 31087733 31087733 C G ZNF646 Missense_Mutation p.L30V 0.14 deleterious(0.04) probably_damaging(0.978) TCGA-B0-4842-01 16 3304667 3304667 G A MEFV Missense_Mutation p.P134L 0.13 tolerated(0.56) benign(0.023) TCGA-B0-4842-01 16 66919397 66919397 G A PDP2 Missense_Mutation p.D404N 0.11 deleterious(0.02) probably_damaging(1) TCGA-B0-4842-01 16 69374099 69374101 AGA - NIP7 In_Frame_Del p.K50del 0.18 TCGA-B0-4842-01 17 15964798 15964798 A G NCOR1 Missense_Mutation p.I1933T 0.14 probably_damaging(0.989) TCGA-B0-4842-01 17 18417963 18417963 G A CTD-2303H24.2 RNA 0.27 TCGA-B0-4842-01 17 7010447 7010447 C A ASGR2 Missense_Mutation p.V179F 0.17 deleterious(0) possibly_damaging(0.891) TCGA-B0-4842-01 17 80394586 80394586 C T HEXDC Silent p.Y225Y 0.31 TCGA-B0-4842-01 18 5407705 5407705 C T EPB41L3 Missense_Mutation p.A718T 0.07 tolerated(1) benign(0.052) TCGA-B0-4842-01 18 67776858 67776858 A G RTTN Missense_Mutation p.L1260P 0.17 deleterious(0) probably_damaging(0.999) TCGA-B0-4842-01 19 1980183 1980183 C A CSNK1G2 Nonsense_Mutation p.S410* 0.16 TCGA-B0-4842-01 19 23543382 23543382 C T ZNF91 Missense_Mutation p.C800Y 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-B0-4842-01 19 40098030 40098030 C T LGALS13 3'UTR 0.20 TCGA-B0-4842-01 19 46281778 46281778 G A DMPK Missense_Mutation p.S195L 0.19 deleterious(0) probably_damaging(0.998) TCGA-B0-4842-01 19 50474955 50474955 C T SIGLEC16 RNA 0.12 TCGA-B0-4842-01 19 52825079 52825079 A T ZNF480 Missense_Mutation p.Q192H 0.03 deleterious(0.05) possibly_damaging(0.694) TCGA-B0-4842-01 1 152324635 152324635 C A FLG2 Missense_Mutation p.R1876M 0.16 probably_damaging(0.99) TCGA-B0-4842-01 1 161018362 161018362 C T ARHGAP30 Missense_Mutation p.G817S 0.13 tolerated_low_confidence(0.2) benign(0.024) TCGA-B0-4842-01 1 196874273 196874273 G T CFHR4 Nonsense_Mutation p.G97* 0.16 TCGA-B0-4842-01 1 205041696 205041696 A C CNTN2 Silent p.R939R 0.15 TCGA-B0-4842-01 1 223178568 223178568 T C DISP1 Missense_Mutation p.Y1277H 0.17 tolerated_low_confidence(0.08) possibly_damaging(0.883) TCGA-B0-4842-01 1 226109762 226109762 C A PYCR2 Missense_Mutation p.Q112H 0.18 tolerated(0.29) benign(0.002) TCGA-B0-4842-01 1 43637236 43637236 C A EBNA1BP2 Missense_Mutation p.E134D 0.19 tolerated(0.42) benign(0.002) TCGA-B0-4842-01 22 40075845 40075845 G A CACNA1I Missense_Mutation p.C1838Y 0.18 tolerated(0.08) benign(0.384) TCGA-B0-4842-01 2 148693257 148693257 T C ORC4 Missense_Mutation p.H378R 0.17 tolerated(0.11) probably_damaging(0.973) TCGA-B0-4842-01 2 1664726 1664726 G A PXDN Silent p.D588D 0.16 TCGA-B0-4842-01 2 27663740 27663740 C T NRBP1 Missense_Mutation p.T421I 0.18 tolerated(0.2) benign(0.126) TCGA-B0-4842-01 2 50724852 50724852 C G NRXN1 Missense_Mutation p.G873A 0.07 tolerated(0.16) probably_damaging(0.937) TCGA-B0-4842-01 2 54883108 54883108 G T SPTBN1 Nonsense_Mutation p.E2007* 0.20 TCGA-B0-4842-01 3 10191470 10191470 G A VHL Splice_Site p.X155_splice 0.09 TCGA-B0-4842-01 3 151165112 151165112 G A IGSF10 Missense_Mutation p.T886I 0.18 tolerated(0.25) benign(0.007) TCGA-B0-4842-01 3 154018456 154018456 T A DHX36 Missense_Mutation p.E463V 0.12 deleterious(0.04) benign(0.066) TCGA-B0-4842-01 3 158523240 158523240 G T MFSD1 Missense_Mutation p.L151F 0.15 tolerated(0.05) possibly_damaging(0.495) TCGA-B0-4842-01 3 193007828 193007828 G T ATP13A5 Missense_Mutation p.P957T 0.14 deleterious(0.02) possibly_damaging(0.607) TCGA-B0-4842-01 3 52439306 52439306 A C BAP1 Silent p.G312G 0.14 TCGA-B0-4842-01 3 52620674 52620674 G A PBRM1 Nonsense_Mutation p.R1027* 0.07 TCGA-B0-4842-01 4 114286245 114286245 C - ANK2 Frame_Shift_Del p.H3647Ifs*128 0.15 TCGA-B0-4842-01 4 125590998 125590998 T G ANKRD50 Missense_Mutation p.D1145A 0.17 tolerated(0.29) benign(0.062) TCGA-B0-4842-01 4 1670531 1670531 G C FAM53A 5'UTR 0.13 TCGA-B0-4842-01 4 2955338 2955338 T C NOP14 Missense_Mutation p.E216G 0.15 deleterious(0.01) probably_damaging(0.975) TCGA-B0-4842-01 5 1255447 1255447 C T TERT Missense_Mutation p.D1038N 0.12 tolerated(0.05) benign(0.168) TCGA-B0-4842-01 5 131323842 131323842 G T ACSL6 Missense_Mutation p.P244T 0.09 deleterious(0.05) probably_damaging(0.92) TCGA-B0-4842-01 5 140263639 140263639 G A PCDHA13 Missense_Mutation p.A596T 0.20 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-B0-4842-01 5 140774124 140774124 G A PCDHGA8 Missense_Mutation p.A582T 0.05 deleterious_low_confidence(0.02) probably_damaging(0.918) TCGA-B0-4842-01 5 145610355 145610355 T C RBM27 Missense_Mutation p.V242A 0.24 tolerated(0.07) benign(0.041) TCGA-B0-4842-01 5 145610357 145610357 A T RBM27 Missense_Mutation p.I243F 0.24 deleterious(0) possibly_damaging(0.466) TCGA-B0-4842-01 5 38486023 38486023 C - LIFR Frame_Shift_Del p.A799Lfs*30 0.15 TCGA-B0-4842-01 5 41064635 41064635 G T MROH2B Silent p.L133L 0.20 TCGA-B0-4842-01 5 75427933 75427933 C T SV2C Missense_Mutation p.R120W 0.17 deleterious(0.03) probably_damaging(0.984) TCGA-B0-4842-01 6 30457316 30457316 A G HLA-E Missense_Mutation p.D3G 0.10 deleterious_low_confidence(0.01) benign(0) TCGA-B0-4842-01 7 157959931 157959931 G A PTPRN2 Missense_Mutation p.A201V 0.06 tolerated(0.17) benign(0.002) TCGA-B0-4842-01 8 107773573 107773573 G A ABRA Missense_Mutation p.H280Y 0.16 deleterious(0) possibly_damaging(0.736) TCGA-B0-4842-01 8 107773580 107773580 G A ABRA Silent p.T277T 0.16 TCGA-B0-4842-01 8 107773583 107773583 G A ABRA Silent p.S276S 0.16 TCGA-B0-4842-01 8 36698090 36698090 C T KCNU1 Missense_Mutation p.A543V 0.08 deleterious(0.01) benign(0.253) TCGA-B0-4842-01 8 6357261 6357268 TTCAGATC - ANGPT2 3'UTR 0.37 TCGA-B0-4842-01 9 116359045 116359045 C T RGS3 Intron 0.21 TCGA-B0-4842-01 9 135782693 135782693 C - TSC1 Frame_Shift_Del p.G443Dfs*14 0.19 TCGA-B0-4842-01 X 134427942 134427942 T G ZNF75D Missense_Mutation p.N42T 0.13 deleterious(0.05) benign(0.003) TCGA-B0-4842-01 X 138713618 138713618 T A MCF2 Missense_Mutation p.Q135L 0.17 deleterious(0) probably_damaging(0.999) TCGA-B0-4842-01 X 153283528 153283528 G A IRAK1 Nonsense_Mutation p.Q280* 0.17 TCGA-B0-4842-01 X 70613248 70613248 G A TAF1 Missense_Mutation p.R1070H 0.16 deleterious(0) probably_damaging(0.984) TCGA-B0-4852-01 10 106074435 106074435 G A ITPRIP Missense_Mutation p.H459Y 0.36 deleterious(0.01) benign(0.317) TCGA-B0-4852-01 10 115664580 115664580 C G NHLRC2 Missense_Mutation p.P570R 0.33 deleterious(0.03) benign(0.197) TCGA-B0-4852-01 10 11894170 11894170 C T PROSER2 Silent p.L32L 0.28 TCGA-B0-4852-01 10 124917322 124917322 A G BUB3 Missense_Mutation p.S115G 0.28 tolerated(0.06) benign(0.055) TCGA-B0-4852-01 10 375486 375486 G T DIP2C Missense_Mutation p.P1214T 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-B0-4852-01 10 70520853 70520857 TAAAG - CCAR1 Frame_Shift_Del p.K671Rfs*14 0.27 TCGA-B0-4852-01 10 74831832 74831833 - AGTATTTG P4HA1 Frame_Shift_Ins p.E94Qfs*24 0.22 TCGA-B0-4852-01 11 5969272 5969272 C A OR56A3 Silent p.L232L 0.28 TCGA-B0-4852-01 11 6292136 6292136 G A CCKBR Intron 0.29 TCGA-B0-4852-01 11 6621799 6621800 - T RRP8 Frame_Shift_Ins p.V390Sfs*3 0.29 TCGA-B0-4852-01 12 114364985 114364985 T C RBM19 Silent p.A706A 0.32 TCGA-B0-4852-01 12 122613773 122613773 G T MLXIP Missense_Mutation p.R232S 0.06 deleterious(0) probably_damaging(0.998) TCGA-B0-4852-01 12 24970766 24970766 G A BCAT1 3'UTR 0.15 TCGA-B0-4852-01 12 43769952 43769952 C T ADAMTS20 Splice_Site p.X1741_splice 0.30 TCGA-B0-4852-01 12 48372430 48372430 G A COL2A1 Missense_Mutation p.P949S 0.42 unknown(0) TCGA-B0-4852-01 12 58202005 58202005 A G AVIL Missense_Mutation p.M389T 0.30 deleterious(0) probably_damaging(0.997) TCGA-B0-4852-01 12 7882078 7882078 G A CLEC4C 3'UTR 0.31 TCGA-B0-4852-01 12 94975953 94975953 C A TMCC3 Missense_Mutation p.G147V 0.27 deleterious(0) probably_damaging(1) TCGA-B0-4852-01 12 96107078 96107078 G - NTN4 Frame_Shift_Del p.S302Afs*99 0.31 TCGA-B0-4852-01 13 67801923 67801923 G T PCDH9 Missense_Mutation p.T217N 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-B0-4852-01 13 77459423 77459423 C G KCTD12 Silent p.S287S 0.40 TCGA-B0-4852-01 14 106311217 106311217 G A IGHD Missense_Mutation p.P116L 0.06 deleterious(0.01) benign(0.242) TCGA-B0-4852-01 14 78045381 78045381 G A SPTLC2 Silent p.N133N 0.43 TCGA-B0-4852-01 15 41192166 41192166 C T VPS18 Missense_Mutation p.R384W 0.33 deleterious(0.01) probably_damaging(0.948) TCGA-B0-4852-01 15 42386652 42386652 C T PLA2G4D Silent p.E2E 0.12 TCGA-B0-4852-01 15 43021465 43021465 G A CDAN1 Silent p.L835L 0.48 TCGA-B0-4852-01 15 45725232 45725232 C G C15orf48 3'UTR 0.05 TCGA-B0-4852-01 15 51741365 51741365 A G DMXL2 Missense_Mutation p.L2977P 0.31 tolerated(0.06) probably_damaging(0.967) TCGA-B0-4852-01 15 51839582 51839582 C G DMXL2 Missense_Mutation p.W197C 0.11 deleterious(0) probably_damaging(0.999) TCGA-B0-4852-01 15 72642743 72642743 G C HEXA Intron 0.24 TCGA-B0-4852-01 16 2983285 2983286 CA - FLYWCH1 Frame_Shift_Del p.T317Pfs*53 0.31 TCGA-B0-4852-01 17 3181512 3181512 C A OR3A2 Missense_Mutation p.V240L 0.40 deleterious(0.01) benign(0.02) TCGA-B0-4852-01 17 35640308 35640308 T C ACACA Splice_Site p.X158_splice 0.33 TCGA-B0-4852-01 17 57754361 57754361 T C CLTC Missense_Mutation p.C870R 0.37 tolerated(0.09) probably_damaging(1) TCGA-B0-4852-01 17 58511110 58511110 C A C17orf64 3'Flank 0.33 TCGA-B0-4852-01 17 79479120 79479120 C T ACTG1 Missense_Mutation p.A58T 0.25 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-B0-4852-01 18 61390295 61390295 G C SERPINB11 Missense_Mutation p.E281Q 0.20 tolerated(0.24) possibly_damaging(0.642) TCGA-B0-4852-01 19 14736333 14736333 T C EMR3 Missense_Mutation p.K631E 0.35 tolerated(0.09) benign(0.211) TCGA-B0-4852-01 19 23329317 23329317 C A ZNF730 Silent p.R491R 0.16 TCGA-B0-4852-01 19 37975687 37975687 G T ZNF570 Missense_Mutation p.C388F 0.14 deleterious(0) probably_damaging(1) TCGA-B0-4852-01 19 38946364 38946364 C A RYR1 Silent p.L588L 0.06 TCGA-B0-4852-01 19 42753474 42753474 G - ERF Frame_Shift_Del p.L264Sfs*7 0.62 TCGA-B0-4852-01 19 51767348 51767348 G T SIGLECL1 Missense_Mutation p.V8L 0.21 deleterious(0.04) unknown(0) TCGA-B0-4852-01 19 55085805 55085805 C A LILRA2 Silent p.G36G 0.38 TCGA-B0-4852-01 1 11187799 11187799 T A MTOR Missense_Mutation p.E2033V 0.39 deleterious(0) probably_damaging(0.971) TCGA-B0-4852-01 1 147096204 147096204 C A BCL9 Missense_Mutation p.S1242Y 0.30 deleterious(0) probably_damaging(0.986) TCGA-B0-4852-01 1 152323802 152323802 T G FLG2 Missense_Mutation p.T2154P 0.04 probably_damaging(0.974) TCGA-B0-4852-01 1 158324301 158324301 C A CD1E Missense_Mutation p.H65N 0.39 deleterious(0) probably_damaging(0.928) TCGA-B0-4852-01 1 161254260 161254260 C T PCP4L1 Missense_Mutation p.P66S 0.04 tolerated_low_confidence(0.18) benign(0.001) TCGA-B0-4852-01 1 212506854 212506854 T A PPP2R5A Missense_Mutation p.F132I 0.36 deleterious(0) possibly_damaging(0.46) TCGA-B0-4852-01 1 223990159 223990159 G C TP53BP2 Intron 0.40 TCGA-B0-4852-01 1 223990160 223990160 C T TP53BP2 Intron 0.40 TCGA-B0-4852-01 1 64643566 64643566 G CGACGACCTTACAAC ROR1 Frame_Shift_Ins p.K614Nfs*14 0.13 TCGA-B0-4852-01 20 45192089 45192089 G A SLC13A3 Silent p.I532I 0.34 TCGA-B0-4852-01 20 62407316 62407316 C T ZBTB46 Splice_Site p.X313_splice 0.45 TCGA-B0-4852-01 21 40572254 40572254 A G BRWD1 Silent p.S1548S 0.27 TCGA-B0-4852-01 22 18643020 18643020 C A USP18 Missense_Mutation p.T80N 0.29 deleterious(0) probably_damaging(0.939) TCGA-B0-4852-01 22 22142621 22142621 T C MAPK1 Missense_Mutation p.R261G 0.04 deleterious(0) possibly_damaging(0.897) TCGA-B0-4852-01 22 38379634 38379634 T C SOX10 Missense_Mutation p.K53R 0.19 tolerated(0.42) probably_damaging(0.973) TCGA-B0-4852-01 22 45928965 45928965 G T FBLN1 Missense_Mutation p.Q189H 0.32 tolerated(0.29) possibly_damaging(0.781) TCGA-B0-4852-01 2 167289087 167289087 A T SCN7A Missense_Mutation p.M778K 0.16 tolerated(0.58) benign(0.003) TCGA-B0-4852-01 2 179622487 179622487 C A TTN Missense_Mutation p.R3487M 0.27 TCGA-B0-4852-01 2 220072989 220072989 T C ZFAND2B Missense_Mutation p.I149T 0.28 tolerated(0.08) benign(0.001) TCGA-B0-4852-01 2 26684967 26684967 C A OTOF Missense_Mutation p.D1759Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-B0-4852-01 2 42671444 42671444 A G KCNG3 Missense_Mutation p.L314S 0.08 deleterious(0) probably_damaging(1) TCGA-B0-4852-01 2 69704092 69704092 A G AAK1 Missense_Mutation p.F904S 0.34 tolerated(0.06) probably_damaging(0.986) TCGA-B0-4852-01 2 74754424 74754424 T C AUP1 Missense_Mutation p.E343G 0.28 deleterious(0.01) probably_damaging(0.988) TCGA-B0-4852-01 3 10191469 10191469 A G VHL Splice_Site p.X155_splice 0.47 TCGA-B0-4852-01 3 121366274 121366274 T G HCLS1 Missense_Mutation p.K60N 0.33 tolerated(0.37) benign(0.403) TCGA-B0-4852-01 3 150874118 150874118 G T MED12L Splice_Site p.X242_splice 0.33 TCGA-B0-4852-01 3 193158423 193158423 A C ATP13A4 Missense_Mutation p.L815V 0.33 tolerated(0.26) possibly_damaging(0.724) TCGA-B0-4852-01 3 41795894 41795895 - A ULK4 Frame_Shift_Ins p.L760Ffs*4 0.36 TCGA-B0-4852-01 3 47144873 47144873 A C SETD2 Missense_Mutation p.M1627R 0.10 deleterious(0) possibly_damaging(0.751) TCGA-B0-4852-01 3 52623124 52623124 T - PBRM1 Frame_Shift_Del p.H976Lfs*32 0.36 TCGA-B0-4852-01 4 1164288 1164288 C G SPON2 Missense_Mutation p.R238T 0.07 tolerated(0.15) benign(0.039) TCGA-B0-4852-01 4 119718966 119718966 C T SEC24D Splice_Site p.X305_splice 0.37 TCGA-B0-4852-01 4 158282180 158282180 A C GRIA2 Intron 0.22 TCGA-B0-4852-01 4 164450028 164450028 G T MARCH1 Missense_Mutation p.L248M 0.13 tolerated(0.15) benign(0.01) TCGA-B0-4852-01 4 187541085 187541109 TGATGCTGTAGAACACTTTCAGGCC - FAT1 Frame_Shift_Del p.G2211Qfs*21 0.26 TCGA-B0-4852-01 4 47537548 47537548 G A ATP10D Missense_Mutation p.V267M 0.04 deleterious(0.03) probably_damaging(0.977) TCGA-B0-4852-01 4 48148400 48148400 A T TEC Silent p.L341L 0.35 TCGA-B0-4852-01 5 131630305 131630305 G A SLC22A4 5'UTR 0.16 TCGA-B0-4852-01 5 137474391 137474391 C G NME5 Missense_Mutation p.E27Q 0.04 tolerated(0.31) possibly_damaging(0.53) TCGA-B0-4852-01 5 153783683 153783684 - CA GALNT10 Frame_Shift_Ins p.M360Tfs*81 0.12 TCGA-B0-4852-01 5 159830295 159830295 C T SLU7 Silent p.Q586Q 0.05 TCGA-B0-4852-01 5 179229049 179229049 T C MGAT4B Silent p.R21R 0.27 TCGA-B0-4852-01 5 64483842 64483842 C G ADAMTS6 Splice_Site p.X970_splice 0.15 TCGA-B0-4852-01 6 114262136 114262136 T C HDAC2 3'UTR 0.06 TCGA-B0-4852-01 6 131926585 131926585 T G MED23 Missense_Mutation p.N470H 0.06 deleterious(0.04) benign(0.353) TCGA-B0-4852-01 6 138753025 138753025 C T NHSL1 Silent p.G823G 0.34 TCGA-B0-4852-01 6 144803419 144803419 C A UTRN Silent p.A1194A 0.04 TCGA-B0-4852-01 6 154412543 154412543 G T OPRM1 Missense_Mutation p.R460L 0.34 deleterious(0.01) probably_damaging(0.989) TCGA-B0-4852-01 6 38783288 38783288 T A DNAH8 Silent p.R909R 0.06 TCGA-B0-4852-01 6 38957910 38957910 C - DNAH8 Frame_Shift_Del p.P4176Lfs*54 0.22 TCGA-B0-4852-01 6 44274838 44274838 A G AARS2 Intron 0.20 TCGA-B0-4852-01 6 71235358 71235358 A C FAM135A Missense_Mutation p.K857N 0.05 tolerated(0.39) benign(0.322) TCGA-B0-4852-01 6 76357474 76357474 A C SENP6 Missense_Mutation p.K169N 0.05 tolerated(0.07) probably_damaging(0.996) TCGA-B0-4852-01 7 107872767 107872767 T A NRCAM Intron 0.25 TCGA-B0-4852-01 7 123332892 123332892 C A WASL Missense_Mutation p.G286W 0.11 deleterious(0.02) unknown(0) TCGA-B0-4852-01 7 140387007 140387007 T A ADCK2 Missense_Mutation p.F508Y 0.20 deleterious(0) probably_damaging(0.985) TCGA-B0-4852-01 7 23183605 23183605 C G KLHL7 Missense_Mutation p.L252V 0.25 deleterious(0.01) possibly_damaging(0.773) TCGA-B0-4852-01 9 123870184 123870184 A T CNTRL Nonsense_Mutation p.K305* 0.35 TCGA-B0-4852-01 9 136523584 136523584 C A DBH 3'UTR 0.50 TCGA-B0-4852-01 9 36209311 36209311 G A CLTA Missense_Mutation p.G178D 0.05 deleterious(0) probably_damaging(0.995) TCGA-B0-4852-01 9 82340100 82340100 C A TLE4 3'UTR 0.31 TCGA-B0-4852-01 9 90343025 90343026 AC - CTSL Frame_Shift_Del p.H71Qfs*15 0.25 TCGA-B0-4852-01 9 98278898 98278898 C A RP11-435O5.4 3'Flank 0.34 TCGA-B0-4852-01 X 107929324 107929324 G T COL4A5 Missense_Mutation p.G1427V 0.32 probably_damaging(1) TCGA-B0-4852-01 X 11783803 11783803 G A MSL3 Missense_Mutation p.D376N 0.06 deleterious(0.02) benign(0.077) TCGA-B0-4852-01 X 128720994 128720994 C T OCRL Nonsense_Mutation p.Q719* 0.32 TCGA-B0-4852-01 X 150869198 150869198 C A PRRG3 Missense_Mutation p.P130H 0.44 deleterious(0) probably_damaging(0.999) TCGA-B0-4852-01 X 154129670 154129670 G A F8 Nonsense_Mutation p.Q2055* 0.33 TCGA-B0-4852-01 X 24007140 24007140 G T KLHL15 Missense_Mutation p.T238K 0.11 tolerated(0.47) benign(0.272) TCGA-B0-4852-01 X 47062342 47062342 G A UBA1 Missense_Mutation p.A412T 0.31 deleterious(0) probably_damaging(0.983) TCGA-B0-4852-01 X 91137907 91137907 C A PCDH11X Intron 0.12 TCGA-B0-4945-01 10 112340772 112340772 A T SMC3 Missense_Mutation p.K180N 0.17 deleterious(0.01) benign(0.115) TCGA-B0-4945-01 10 126671767 126671767 G A ZRANB1 Silent p.T524T 0.18 TCGA-B0-4945-01 10 51769499 51769499 C T AGAP6 Silent p.D538D 0.13 TCGA-B0-4945-01 10 75003676 75003676 C G DNAJC9 Missense_Mutation p.E196D 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-B0-4945-01 11 129062035 129062035 G A ARHGAP32 Missense_Mutation p.S20F 0.22 deleterious_low_confidence(0.04) benign(0.002) TCGA-B0-4945-01 11 30930565 30930565 C G DCDC1 Missense_Mutation p.K1282N 0.17 deleterious(0) possibly_damaging(0.607) TCGA-B0-4945-01 12 107237651 107237651 C G RIC8B Missense_Mutation p.L363V 0.16 tolerated(0.26) probably_damaging(0.998) TCGA-B0-4945-01 12 123214322 123214322 G A HCAR1 Missense_Mutation p.L189F 0.07 deleterious(0.04) probably_damaging(1) TCGA-B0-4945-01 12 129559305 129559305 G T TMEM132D Missense_Mutation p.N805K 0.13 tolerated(0.52) benign(0.085) TCGA-B0-4945-01 14 104381489 104381489 A G C14orf2 Missense_Mutation p.M30T 0.22 deleterious(0.03) benign(0.041) TCGA-B0-4945-01 15 40897317 40897317 A G CASC5 Missense_Mutation p.I15M 0.04 tolerated(0.17) benign(0.005) TCGA-B0-4945-01 16 2812602 2812602 G A SRRM2 Silent p.R691R 0.04 TCGA-B0-4945-01 16 48227787 48227787 C A ABCC11 Intron 0.16 TCGA-B0-4945-01 16 57059677 57059677 C T NLRC5 Silent p.S274S 0.05 TCGA-B0-4945-01 17 32583808 32583808 G C CCL2 Missense_Mutation p.D88H 0.07 deleterious(0) benign(0.109) TCGA-B0-4945-01 17 38447480 38447480 C T CDC6 Nonsense_Mutation p.Q117* 0.04 TCGA-B0-4945-01 17 41898423 41898423 A T MPP3 Missense_Mutation p.F230I 0.10 deleterious(0) benign(0.426) TCGA-B0-4945-01 17 81042716 81042716 C A METRNL Intron 0.20 TCGA-B0-4945-01 19 1623968 1623968 C T TCF3 Silent p.P177P 0.14 TCGA-B0-4945-01 19 34959981 34959981 A C UBA2 Missense_Mutation p.D593A 0.21 tolerated(0.06) benign(0.219) TCGA-B0-4945-01 19 47124908 47124908 C G PTGIR Missense_Mutation p.V264L 0.12 tolerated(0.24) benign(0.004) TCGA-B0-4945-01 19 7670326 7670326 G A CAMSAP3 Silent p.P121P 0.06 TCGA-B0-4945-01 1 156821582 156821582 T C INSRR Splice_Site p.X314_splice 0.18 TCGA-B0-4945-01 1 157491077 157491077 C A FCRL5 Missense_Mutation p.V749L 0.14 tolerated(0.06) possibly_damaging(0.656) TCGA-B0-4945-01 1 158326808 158326808 G A CD1E 3'Flank 0.24 TCGA-B0-4945-01 1 226836374 226836374 T C ITPKB Silent p.A677A 0.12 TCGA-B0-4945-01 1 27098998 27099001 AGGA - ARID1A Frame_Shift_Del p.G1139Lfs*21 0.22 TCGA-B0-4945-01 1 34052212 34052212 T C CSMD2 Missense_Mutation p.I2317V 0.05 tolerated(0.18) benign(0.012) TCGA-B0-4945-01 22 23915409 23915409 T C IGLL1 3'UTR 0.16 TCGA-B0-4945-01 22 37462067 37462067 C T TMPRSS6 3'UTR 0.27 TCGA-B0-4945-01 2 158167827 158167827 A T GALNT5 Missense_Mutation p.Q930H 0.17 deleterious(0) probably_damaging(1) TCGA-B0-4945-01 2 38975784 38975784 C A SRSF7 Missense_Mutation p.R133I 0.17 deleterious(0) unknown(0) TCGA-B0-4945-01 3 10191513 10191513 T C VHL Missense_Mutation p.L169P 0.28 deleterious(0) probably_damaging(0.994) TCGA-B0-4945-01 3 143567237 143567237 G T SLC9A9 5'UTR 0.15 TCGA-B0-4945-01 3 51749885 51749885 T A GRM2 Missense_Mutation p.V699E 0.18 deleterious(0.02) benign(0.431) TCGA-B0-4945-01 4 184368249 184368249 T - CDKN2AIP Frame_Shift_Del p.I471Mfs*4 0.18 TCGA-B0-4945-01 4 4199146 4199146 A C OTOP1 Missense_Mutation p.M472R 0.20 tolerated(0.41) benign(0.009) TCGA-B0-4945-01 4 53752026 53752026 C A SCFD2 Missense_Mutation p.R617L 0.14 deleterious(0.01) possibly_damaging(0.855) TCGA-B0-4945-01 4 73175164 73175164 G T ADAMTS3 Missense_Mutation p.S710Y 0.19 deleterious(0) probably_damaging(0.977) TCGA-B0-4945-01 4 83800058 83800058 G - SEC31A Frame_Shift_Del p.P76Lfs*14 0.20 TCGA-B0-4945-01 5 141027542 141027542 A C FCHSD1 Missense_Mutation p.L233R 0.10 deleterious(0.02) possibly_damaging(0.602) TCGA-B0-4945-01 6 117037431 117037431 G A KPNA5 Missense_Mutation p.A236T 0.05 tolerated(1) probably_damaging(0.999) TCGA-B0-4945-01 6 29342286 29342286 C T OR12D3 Missense_Mutation p.R260H 0.07 tolerated(0.15) benign(0.082) TCGA-B0-4945-01 6 33255942 33255942 T G WDR46 Missense_Mutation p.I182L 0.17 tolerated(0.06) possibly_damaging(0.886) TCGA-B0-4945-01 6 33288852 33288852 G A DAXX Missense_Mutation p.R234C 0.20 deleterious(0.04) benign(0.038) TCGA-B0-4945-01 7 106924166 106924166 G A COG5 Missense_Mutation p.A473V 0.14 deleterious(0.05) benign(0.287) TCGA-B0-4945-01 7 151878457 151878457 G T KMT2C Missense_Mutation p.P2163H 0.17 probably_damaging(0.993) TCGA-B0-4945-01 7 57529077 57529077 G A ZNF716 Missense_Mutation p.A304T 0.25 tolerated(0.06) possibly_damaging(0.526) TCGA-B0-4945-01 7 92921015 92921015 C A CCDC132 Missense_Mutation p.H315N 0.16 tolerated(0.52) benign(0.051) TCGA-B0-4945-01 8 77766973 77766973 A - ZFHX4 Frame_Shift_Del p.K2606Nfs*3 0.17 TCGA-B0-4945-01 9 128001354 128001354 G C HSPA5 Missense_Mutation p.L288V 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B0-4945-01 9 35813449 35813451 TCT - HINT2 In_Frame_Del p.E106del 0.19 TCGA-B0-4945-01 X 19507017 19507017 C T MAP3K15 Missense_Mutation p.E144K 0.04 deleterious(0) probably_damaging(0.985) TCGA-B0-4945-01 X 43698194 43698194 G T MAOB Missense_Mutation p.R67S 0.04 deleterious(0.02) probably_damaging(0.912) TCGA-B0-4945-01 X 70147814 70147814 A C SLC7A3 Missense_Mutation p.S293A 0.19 deleterious(0.03) benign(0.102) TCGA-B0-5075-01 10 119044256 119044256 G A PDZD8 Missense_Mutation p.S663L 0.05 deleterious(0.04) benign(0.002) TCGA-B0-5075-01 10 120917388 120917388 T G SFXN4 Missense_Mutation p.S156R 0.30 deleterious(0) probably_damaging(0.997) TCGA-B0-5075-01 10 122663626 122663626 G A WDR11 Missense_Mutation p.C1000Y 0.31 deleterious(0) probably_damaging(0.921) TCGA-B0-5075-01 10 87407078 87407078 G T GRID1 Silent p.R692R 0.24 TCGA-B0-5075-01 10 88702115 88702115 C G MMRN2 Missense_Mutation p.G809A 0.19 tolerated(0.57) benign(0.114) TCGA-B0-5075-01 10 98273269 98273269 G A TLL2 Silent p.A58A 0.27 TCGA-B0-5075-01 11 105962108 105962108 A T AASDHPPT Missense_Mutation p.E199D 0.28 tolerated(0.16) benign(0.109) TCGA-B0-5075-01 11 1086012 1086012 C T MUC2 Missense_Mutation p.T951M 0.27 probably_damaging(0.994) TCGA-B0-5075-01 11 1090371 1090371 C A MUC2 Missense_Mutation p.P1223T 0.29 possibly_damaging(0.786) TCGA-B0-5075-01 11 18460186 18460186 T - LDHC Frame_Shift_Del p.Q236Kfs*9 0.30 TCGA-B0-5075-01 11 63175588 63175588 G A SLC22A9 Missense_Mutation p.M431I 0.19 deleterious(0.03) benign(0.366) TCGA-B0-5075-01 11 65273403 65273403 C A MALAT1 RNA 0.32 TCGA-B0-5075-01 11 84028081 84028081 G T DLG2 Intron 0.25 TCGA-B0-5075-01 12 110240804 110240804 T C TRPV4 Missense_Mutation p.Y235C 0.54 deleterious(0.02) probably_damaging(0.957) TCGA-B0-5075-01 12 123741655 123741655 G C C12orf65 3'UTR 0.46 TCGA-B0-5075-01 12 27059272 27059272 T A ASUN Nonsense_Mutation p.R682* 0.42 TCGA-B0-5075-01 12 65136922 65136922 G A GNS Missense_Mutation p.T264M 0.18 tolerated(0.1) benign(0.042) TCGA-B0-5075-01 12 67696132 67696132 G T CAND1 Missense_Mutation p.D344Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-B0-5075-01 12 99793525 99793525 T C ANKS1B Missense_Mutation p.Y547C 0.27 tolerated_low_confidence(0.13) benign(0.011) TCGA-B0-5075-01 13 50243946 50243946 C T EBPL Missense_Mutation p.V70I 0.26 tolerated(0.35) benign(0.213) TCGA-B0-5075-01 13 50243947 50243947 G T EBPL Missense_Mutation p.N69K 0.27 tolerated(0.1) possibly_damaging(0.782) TCGA-B0-5075-01 13 79190711 79190711 A G RNF219 Silent p.L395L 0.04 TCGA-B0-5075-01 14 36005119 36005119 A - INSM2 Frame_Shift_Del p.V555Cfs*58 0.36 TCGA-B0-5075-01 14 39511999 39511999 A C SEC23A Nonsense_Mutation p.Y659* 0.33 TCGA-B0-5075-01 15 42127085 42127085 A G JMJD7-PLA2G4B Missense_Mutation p.Y71C 0.24 deleterious_low_confidence(0) possibly_damaging(0.528) TCGA-B0-5075-01 15 44166215 44166215 A - FRMD5 Frame_Shift_Del p.D528Tfs*37 0.16 TCGA-B0-5075-01 15 71174954 71174954 G T THAP10 Missense_Mutation p.L205M 0.18 tolerated(0.1) possibly_damaging(0.543) TCGA-B0-5075-01 15 74622668 74622668 G A CCDC33 Missense_Mutation p.G477S 0.22 tolerated(0.79) benign(0.198) TCGA-B0-5075-01 15 81601012 81601012 C T IL16 Missense_Mutation p.A1291V 0.27 tolerated(0.24) benign(0.028) TCGA-B0-5075-01 15 91504264 91504264 A C RCCD1 Missense_Mutation p.E320A 0.26 deleterious(0.01) possibly_damaging(0.723) TCGA-B0-5075-01 16 28841977 28841977 G T ATXN2L Missense_Mutation p.G359V 0.19 tolerated(0.29) probably_damaging(0.999) TCGA-B0-5075-01 16 30435760 30435760 G A DCTPP1 Silent p.L103L 0.30 TCGA-B0-5075-01 16 69481136 69481136 T A CYB5B Missense_Mutation p.D86E 0.13 deleterious(0) benign(0.106) TCGA-B0-5075-01 16 69481137 69481137 G A CYB5B Missense_Mutation p.A87T 0.12 deleterious(0.01) possibly_damaging(0.729) TCGA-B0-5075-01 16 69481138 69481138 C T CYB5B Missense_Mutation p.A87V 0.12 deleterious(0) probably_damaging(0.981) TCGA-B0-5075-01 16 720301 720301 A G RHOT2 Missense_Mutation p.M128V 0.35 tolerated(0.08) benign(0.014) TCGA-B0-5075-01 16 88696911 88696911 C T ZC3H18 Missense_Mutation p.S862L 0.19 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-B0-5075-01 17 13972886 13972886 A T COX10 5'UTR 0.26 TCGA-B0-5075-01 17 1553035 1553035 C T RILP Missense_Mutation p.A22T 0.19 tolerated(0.12) benign(0.085) TCGA-B0-5075-01 17 28384816 28384816 G C EFCAB5 Missense_Mutation p.D830H 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-B0-5075-01 17 41168133 41168133 T G VAT1 Missense_Mutation p.E376A 0.24 deleterious(0.01) possibly_damaging(0.869) TCGA-B0-5075-01 17 66878106 66878106 C A ABCA8 Missense_Mutation p.A1242S 0.24 deleterious(0) probably_damaging(0.96) TCGA-B0-5075-01 17 73569193 73569193 T C LLGL2 Silent p.S853S 0.17 TCGA-B0-5075-01 18 21694593 21694593 G A TTC39C Missense_Mutation p.V354I 0.23 tolerated(0.44) benign(0.028) TCGA-B0-5075-01 18 25591824 25591824 G A CDH2 Nonsense_Mutation p.Q178* 0.26 TCGA-B0-5075-01 19 1043790 1043790 C G ABCA7 Missense_Mutation p.P333A 0.23 deleterious(0.03) benign(0.025) TCGA-B0-5075-01 19 10568586 10568586 C T PDE4A Silent p.P303P 0.20 TCGA-B0-5075-01 19 12825697 12825697 C T TNPO2 Silent p.E276E 0.20 TCGA-B0-5075-01 19 19313200 19313200 C T NR2C2AP Silent p.Q81Q 0.26 TCGA-B0-5075-01 19 35501023 35501023 T G GRAMD1A Missense_Mutation p.I118S 0.26 deleterious(0) probably_damaging(0.999) TCGA-B0-5075-01 19 40376319 40376319 G A FCGBP Silent p.Y3995Y 0.23 TCGA-B0-5075-01 19 42221409 42221409 T G CEACAM5 Missense_Mutation p.S332A 0.23 tolerated(0.26) unknown(0) TCGA-B0-5075-01 19 46281793 46281794 - CAATCAAT DMPK Nonsense_Mutation p.V190Dfs*2 0.39 TCGA-B0-5075-01 19 49362923 49362923 A C PLEKHA4 Silent p.P165P 0.21 TCGA-B0-5075-01 19 8564330 8564330 T C PRAM1 Missense_Mutation p.K121R 0.03 tolerated(0.07) benign(0.178) TCGA-B0-5075-01 19 9067241 9067241 G T MUC16 Silent p.I6735I 0.26 TCGA-B0-5075-01 19 9067242 9067242 A G MUC16 Missense_Mutation p.I6735T 0.27 unknown(0) TCGA-B0-5075-01 1 10163026 10163026 A T UBE4B Missense_Mutation p.E152D 0.22 tolerated(0.42) unknown(0) TCGA-B0-5075-01 1 110923620 110923623 ATCT - SLC16A4 Frame_Shift_Del p.D170Cfs*16 0.29 TCGA-B0-5075-01 1 12943139 12943139 G A PRAMEF4 Missense_Mutation p.A26V 0.39 tolerated(0.06) possibly_damaging(0.661) TCGA-B0-5075-01 1 155170785 155170785 A T THBS3 Missense_Mutation p.L484H 0.25 tolerated(0.15) benign(0.401) TCGA-B0-5075-01 1 183197726 183197726 G A LAMC2 Silent p.L562L 0.25 TCGA-B0-5075-01 1 32149718 32149718 C T COL16A1 Missense_Mutation p.G759S 0.38 unknown(0) TCGA-B0-5075-01 1 55224207 55224207 A G PARS2 Missense_Mutation p.Y210H 0.30 deleterious(0) probably_damaging(1) TCGA-B0-5075-01 1 63063407 63063407 T A ANGPTL3 Missense_Mutation p.L57H 0.24 deleterious(0) probably_damaging(0.986) TCGA-B0-5075-01 1 87805218 87805218 G C LMO4 Splice_Site p.X79_splice 0.28 TCGA-B0-5075-01 1 99771434 99771434 C G LPPR4 Missense_Mutation p.T387R 0.27 deleterious(0.02) benign(0.115) TCGA-B0-5075-01 20 33245016 33245016 C A PIGU Missense_Mutation p.V55L 0.29 deleterious(0.04) benign(0.442) TCGA-B0-5075-01 20 57766296 57766296 C T ZNF831 Silent p.R74R 0.26 TCGA-B0-5075-01 21 11098733 11098733 G A BAGE2 RNA 0.11 TCGA-B0-5075-01 22 30079118 30079118 A G NF2 Intron 0.25 TCGA-B0-5075-01 22 41246824 41246824 T C ST13 Intron 0.17 TCGA-B0-5075-01 22 50921276 50921276 G A ADM2 Missense_Mutation p.A131T 0.11 tolerated(0.14) probably_damaging(0.998) TCGA-B0-5075-01 2 15607839 15607839 T C NBAS Missense_Mutation p.E656G 0.48 deleterious(0.02) benign(0.075) TCGA-B0-5075-01 3 113377055 113377055 C A KIAA2018 Missense_Mutation p.R1158S 0.20 benign(0.219) TCGA-B0-5075-01 3 130463485 130463487 CTC - PIK3R4 In_Frame_Del p.R193del 0.30 TCGA-B0-5075-01 3 132387698 132387698 A G UBA5 Missense_Mutation p.N112D 0.23 deleterious(0) probably_damaging(0.994) TCGA-B0-5075-01 3 141671843 141671843 G - TFDP2 Frame_Shift_Del p.P356Lfs*4 0.22 TCGA-B0-5075-01 3 17279709 17279709 G A TBC1D5 Nonsense_Mutation p.Q512* 0.36 TCGA-B0-5075-01 3 186364117 186364117 A T FETUB Silent p.S225S 0.27 TCGA-B0-5075-01 3 38294372 38294372 G A OXSR1 Missense_Mutation p.S525N 0.26 deleterious(0.01) possibly_damaging(0.881) TCGA-B0-5075-01 3 98251516 98251516 C T GPR15 Silent p.T213T 0.03 TCGA-B0-5075-01 3 99513362 99513362 G A COL8A1 Missense_Mutation p.G206D 0.27 deleterious(0.04) unknown(0) TCGA-B0-5075-01 4 129043237 129043237 G C LARP1B Missense_Mutation p.R473P 0.20 deleterious(0.01) benign(0.087) TCGA-B0-5075-01 4 17805767 17805767 G A DCAF16 5'UTR 0.25 TCGA-B0-5075-01 4 40122527 40122527 C T N4BP2 Silent p.G932G 0.26 TCGA-B0-5075-01 4 89385020 89385020 T G HERC5 Missense_Mutation p.F265L 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-B0-5075-01 5 150407548 150407548 C A GPX3 Missense_Mutation p.R180S 0.23 tolerated(0.38) possibly_damaging(0.897) TCGA-B0-5075-01 6 155498049 155498049 G A TIAM2 Missense_Mutation p.G821R 0.29 tolerated(0.09) benign(0.172) TCGA-B0-5075-01 6 170878701 170878703 GAA - TBP In_Frame_Del p.E228del 0.36 TCGA-B0-5075-01 6 30548295 30548295 A G ABCF1 Missense_Mutation p.Q226R 0.17 tolerated(0.39) benign(0.015) TCGA-B0-5075-01 6 35258122 35258122 G T ZNF76 Missense_Mutation p.G171V 0.26 deleterious(0.02) probably_damaging(0.941) TCGA-B0-5075-01 6 39073238 39073238 C G SAYSD1 Missense_Mutation p.E174D 0.24 deleterious(0.02) unknown(0) TCGA-B0-5075-01 6 43402438 43402438 C T ABCC10 Missense_Mutation p.A487V 0.22 tolerated(0.16) benign(0.014) TCGA-B0-5075-01 6 93964470 93964470 C A EPHA7 Missense_Mutation p.Q809H 0.32 deleterious(0) probably_damaging(0.974) TCGA-B0-5075-01 7 39247075 39247075 A T POU6F2 Missense_Mutation p.I123F 0.24 deleterious(0) probably_damaging(0.921) TCGA-B0-5075-01 7 5541300 5541300 G A FBXL18 Silent p.Y200Y 0.27 TCGA-B0-5075-01 7 94185226 94185226 A C CASD1 3'UTR 0.29 TCGA-B0-5075-01 8 103341598 103341598 A G UBR5 Silent p.A376A 0.19 TCGA-B0-5075-01 8 11188632 11188632 C A SLC35G5 Missense_Mutation p.P6H 0.33 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-B0-5075-01 8 142178354 142178354 C A DENND3 Silent p.R589R 0.22 TCGA-B0-5075-01 8 17612616 17612616 G T MTUS1 Missense_Mutation p.T234K 0.28 deleterious(0.05) benign(0.075) TCGA-B0-5075-01 8 21840307 21840307 G C XPO7 Missense_Mutation p.V421L 0.22 deleterious(0.01) possibly_damaging(0.688) TCGA-B0-5075-01 8 67546975 67546980 CAACTT - VCPIP1 In_Frame_Del p.E1142_V1143del 0.30 TCGA-B0-5075-01 8 97244062 97244062 T A UQCRB Silent p.A66A 0.29 TCGA-B0-5075-01 9 113007067 113007067 C G TXN Missense_Mutation p.K82N 0.16 tolerated(0.79) benign(0.041) TCGA-B0-5075-01 9 117106062 117106062 G T AKNA Missense_Mutation p.S1228Y 0.18 deleterious(0.01) benign(0.405) TCGA-B0-5075-01 9 118163493 118163493 A G DEC1 Missense_Mutation p.R37G 0.10 deleterious_low_confidence(0.02) benign(0.015) TCGA-B0-5075-01 X 110491970 110491970 G A CAPN6 Silent p.H437H 0.23 TCGA-B0-5075-01 X 133609298 133609298 C A HPRT1 Missense_Mutation p.F74L 0.27 deleterious(0) possibly_damaging(0.791) TCGA-B0-5077-01 10 118645923 118645923 C T KIAA1598 Missense_Mutation p.E610K 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-B0-5077-01 10 92508881 92508881 G T HTR7 Missense_Mutation p.T337N 0.29 deleterious(0.01) possibly_damaging(0.643) TCGA-B0-5077-01 10 97920188 97920188 T C ZNF518A RNA 0.24 TCGA-B0-5077-01 11 117165880 117165894 GCCTTCCCAGTTGGA - BACE1 In_Frame_Del p.S174_G178del 0.31 TCGA-B0-5077-01 11 119029566 119029566 G T ABCG4 Missense_Mutation p.R455M 0.28 deleterious(0) probably_damaging(0.995) TCGA-B0-5077-01 11 22242734 22242734 A G ANO5 Missense_Mutation p.K91R 0.28 tolerated(0.25) benign(0.04) TCGA-B0-5077-01 11 47336865 47336865 T C MADD Missense_Mutation p.I1455T 0.27 deleterious(0) benign(0.313) TCGA-B0-5077-01 11 5537653 5537653 G A UBQLNL Nonsense_Mutation p.R7* 0.31 TCGA-B0-5077-01 11 64434814 64434814 A C NRXN2 Missense_Mutation p.M569R 0.27 deleterious(0) benign(0) TCGA-B0-5077-01 11 73066597 73066597 T C ARHGEF17 Missense_Mutation p.V1158A 0.37 tolerated(0.32) benign(0.047) TCGA-B0-5077-01 11 92590423 92590423 G A FAT3 Silent p.P3803P 0.23 TCGA-B0-5077-01 11 95564238 95564238 A T CEP57 Nonsense_Mutation p.K441* 0.30 TCGA-B0-5077-01 11 95564248 95564248 T C CEP57 Missense_Mutation p.L444P 0.31 tolerated(0.21) benign(0.006) TCGA-B0-5077-01 12 29629166 29629166 C T OVCH1 Missense_Mutation p.G482S 0.17 tolerated(0.61) benign(0.043) TCGA-B0-5077-01 12 46245037 46245056 AGTCGAATGCAGGAGTTGGT - ARID2 Frame_Shift_Del p.Q1044Pfs*6 0.21 TCGA-B0-5077-01 12 57919665 57919671 GAGGGGC AAGGGT MBD6 Frame_Shift_Del p.G305Efs*72 0.32 TCGA-B0-5077-01 12 6701596 6701596 C G CHD4 Missense_Mutation p.E971Q 0.04 deleterious(0) probably_damaging(0.913) TCGA-B0-5077-01 12 78400326 78400326 C G NAV3 Silent p.S336S 0.35 TCGA-B0-5077-01 13 32899270 32899270 A G BRCA2 Missense_Mutation p.D125G 0.20 tolerated(0.23) benign(0.003) TCGA-B0-5077-01 15 42137191 42137191 G A PLA2G4B Missense_Mutation p.E619K 0.27 tolerated(0.16) probably_damaging(0.991) TCGA-B0-5077-01 16 30099894 30099894 A T TBX6 Missense_Mutation p.F271I 0.41 deleterious(0) probably_damaging(0.997) TCGA-B0-5077-01 16 87677876 87677876 G A JPH3 Missense_Mutation p.G132D 0.23 deleterious(0) probably_damaging(0.997) TCGA-B0-5077-01 17 17696713 17696713 G A RAI1 Missense_Mutation p.V151M 0.29 deleterious(0.03) possibly_damaging(0.838) TCGA-B0-5077-01 17 18907263 18907263 T C FAM83G Missense_Mutation p.Q31R 0.16 tolerated(0.11) probably_damaging(0.999) TCGA-B0-5077-01 17 57474661 57474661 G T YPEL2 3'UTR 0.28 TCGA-B0-5077-01 17 9559806 9559806 A G USP43 Silent p.V197V 0.21 TCGA-B0-5077-01 19 10503785 10503785 C T CDC37 Missense_Mutation p.A320T 0.05 tolerated(0.89) benign(0.003) TCGA-B0-5077-01 19 1913029 1913029 C G ADAT3 Missense_Mutation p.S328W 0.22 deleterious(0.02) benign(0.401) TCGA-B0-5077-01 19 1913030 1913030 G T ADAT3 Silent p.S328S 0.26 TCGA-B0-5077-01 19 35837719 35837719 A G CD22 3'UTR 0.22 TCGA-B0-5077-01 1 150235516 150235516 A G CA14 Missense_Mutation p.N213S 0.31 deleterious(0.03) probably_damaging(0.977) TCGA-B0-5077-01 1 152552008 152552008 C - LCE3D 3'UTR 0.23 TCGA-B0-5077-01 1 160001252 160001252 A T PIGM Missense_Mutation p.L93H 0.27 tolerated(0.05) possibly_damaging(0.885) TCGA-B0-5077-01 20 4880292 4880292 C T SLC23A2 Missense_Mutation p.G131R 0.27 tolerated(0.06) probably_damaging(1) TCGA-B0-5077-01 21 45736400 45736400 G A PFKL Missense_Mutation p.R310Q 0.05 deleterious(0) benign(0.069) TCGA-B0-5077-01 2 179642494 179642494 T - TTN Frame_Shift_Del p.T1473Lfs*6 0.17 TCGA-B0-5077-01 2 182774683 182774683 A G SSFA2 Missense_Mutation p.T491A 0.24 tolerated(0.45) benign(0.011) TCGA-B0-5077-01 2 209028037 209028037 C T CRYGA Missense_Mutation p.R48H 0.07 tolerated(0.12) benign(0.061) TCGA-B0-5077-01 2 227661146 227661146 G T IRS1 Missense_Mutation p.S770Y 0.25 deleterious(0) possibly_damaging(0.48) TCGA-B0-5077-01 2 242163570 242163570 G A ANO7 3'UTR 0.26 TCGA-B0-5077-01 3 10183725 10183725 C G VHL Missense_Mutation p.S65W 0.40 deleterious(0) probably_damaging(1) TCGA-B0-5077-01 3 138117372 138117372 A T MRAS Missense_Mutation p.T137S 0.49 tolerated(1) benign(0) TCGA-B0-5077-01 3 48697119 48697119 G C CELSR3 Missense_Mutation p.I983M 0.31 deleterious(0) probably_damaging(0.993) TCGA-B0-5077-01 3 50357640 50357640 C G HYAL2 Missense_Mutation p.R94T 0.24 tolerated(1) benign(0.001) TCGA-B0-5077-01 4 152020788 152020791 GCTC - RPS3A 5'UTR 0.28 TCGA-B0-5077-01 4 175898804 175898804 G T ADAM29 Missense_Mutation p.V710F 0.32 tolerated(0.06) benign(0.243) TCGA-B0-5077-01 5 129015555 129015555 C T ADAMTS19 Nonsense_Mutation p.R863* 0.14 TCGA-B0-5077-01 5 176831333 176831333 C A F12 Missense_Mutation p.Q294H 0.15 tolerated(0.13) possibly_damaging(0.868) TCGA-B0-5077-01 5 176893974 176893974 C A DBN1 Silent p.R217R 0.58 TCGA-B0-5077-01 5 178507172 178507172 G A ZNF354C 3'UTR 0.15 TCGA-B0-5077-01 5 180651530 180651530 T A TRIM41 Silent p.P177P 0.14 TCGA-B0-5077-01 6 24658870 24658870 G A TDP2 Missense_Mutation p.S115F 0.25 deleterious(0) possibly_damaging(0.862) TCGA-B0-5077-01 6 25509937 25509937 C T LRRC16A Silent p.N483N 0.15 TCGA-B0-5077-01 6 90513110 90513110 T G MDN1 Missense_Mutation p.D89A 0.20 benign(0.094) TCGA-B0-5077-01 7 135333377 135333377 T G NUP205 3'UTR 0.21 TCGA-B0-5077-01 7 99474477 99474477 A G OR2AE1 Silent p.Y60Y 0.23 TCGA-B0-5077-01 7 99631276 99631276 G C ZKSCAN1 Missense_Mutation p.G383A 0.17 deleterious(0) probably_damaging(0.994) TCGA-B0-5077-01 8 145634429 145634429 G C CPSF1 Silent p.L38L 0.23 TCGA-B0-5077-01 8 23217701 23217701 C T LOXL2 Missense_Mutation p.V145I 0.28 tolerated(0.3) benign(0.274) TCGA-B0-5077-01 8 30402150 30402150 T C RBPMS Intron 0.28 TCGA-B0-5077-01 8 30402171 30402171 C G RBPMS Intron 0.28 TCGA-B0-5077-01 8 9413533 9413533 G T TNKS Silent p.P28P 0.45 TCGA-B0-5077-01 9 13221425 13221427 TCC - MPDZ In_Frame_Del p.G274del 0.37 TCGA-B0-5077-01 9 136233529 136233529 G A SURF4 Silent p.S86S 0.24 TCGA-B0-5077-01 9 15211317 15211317 C T TTC39B Silent p.Q187Q 0.30 TCGA-B0-5077-01 X 111874741 111874741 A - LHFPL1 Frame_Shift_Del p.G191Efs*14 0.44 TCGA-B0-5077-01 X 2951181 2951181 C A ARSH Missense_Mutation p.L482I 0.53 deleterious(0.01) probably_damaging(0.98) TCGA-B0-5077-01 X 53231127 53231127 T A KDM5C Missense_Mutation p.E592V 0.69 deleterious(0) probably_damaging(0.999) TCGA-B0-5077-01 X 55247874 55247874 C G PAGE5 Missense_Mutation p.S40C 0.06 tolerated(0.07) probably_damaging(0.979) TCGA-B0-5080-01 10 17199558 17199558 G C TRDMT1 Missense_Mutation p.L257V 0.04 deleterious(0) probably_damaging(0.992) TCGA-B0-5080-01 10 23292289 23292289 T A ARMC3 Silent p.T559T 0.05 TCGA-B0-5080-01 10 55663098 55663098 C A PCDH15 Missense_Mutation p.D1136Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-B0-5080-01 10 55663099 55663099 C A PCDH15 Missense_Mutation p.Q1135H 0.11 deleterious(0.02) benign(0.128) TCGA-B0-5080-01 10 73121852 73121852 G A SLC29A3 Silent p.T305T 0.09 TCGA-B0-5080-01 10 99156039 99156039 G T RRP12 Missense_Mutation p.A130D 0.14 deleterious(0) probably_damaging(0.998) TCGA-B0-5080-01 10 99156040 99156040 C T RRP12 Missense_Mutation p.A130T 0.14 deleterious(0) probably_damaging(0.948) TCGA-B0-5080-01 11 32697453 32697453 G T CCDC73 Missense_Mutation p.H182N 0.15 deleterious(0) probably_damaging(0.999) TCGA-B0-5080-01 11 64988531 64988531 C T SLC22A20 Intron 0.17 TCGA-B0-5080-01 11 66813240 66813240 G T SYT12 Silent p.L328L 0.17 TCGA-B0-5080-01 12 122257524 122257524 G - SETD1B Frame_Shift_Del p.D1169Tfs*63 0.20 TCGA-B0-5080-01 12 44176279 44176279 T C IRAK4 Missense_Mutation p.Y371H 0.12 deleterious(0) probably_damaging(0.996) TCGA-B0-5080-01 12 62798002 62798002 G C USP15 Missense_Mutation p.Q931H 0.17 tolerated(0.07) probably_damaging(0.937) TCGA-B0-5080-01 12 7459281 7459281 C A ACSM4 Silent p.A118A 0.20 TCGA-B0-5080-01 13 73284303 73284303 C A MZT1 3'UTR 0.10 TCGA-B0-5080-01 15 49869034 49869034 G A FAM227B Silent p.S150S 0.06 TCGA-B0-5080-01 15 50791105 50791105 C G USP8 Missense_Mutation p.H1059Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-B0-5080-01 16 21128547 21128547 C T DNAH3 Silent p.Q597Q 0.04 TCGA-B0-5080-01 16 61689474 61689474 G C CDH8 Missense_Mutation p.D602E 0.08 tolerated(0.5) benign(0.021) TCGA-B0-5080-01 16 66430033 66430033 A T CDH5 Missense_Mutation p.E430V 0.20 tolerated(0.31) benign(0.004) TCGA-B0-5080-01 17 10728777 10728777 G A PIRT Silent p.G62G 0.21 TCGA-B0-5080-01 17 19705159 19705159 C T ULK2 Missense_Mutation p.D458N 0.12 deleterious(0.04) benign(0.076) TCGA-B0-5080-01 17 35804809 35804809 T G TADA2A Missense_Mutation p.N181K 0.16 deleterious(0) possibly_damaging(0.851) TCGA-B0-5080-01 17 39566058 39566058 A C AC003958.2 RNA 0.37 TCGA-B0-5080-01 17 48191586 48191586 A G SAMD14 Missense_Mutation p.Y331H 0.10 tolerated(0.54) probably_damaging(0.961) TCGA-B0-5080-01 17 72342609 72342609 G T KIF19 Missense_Mutation p.K290N 0.11 deleterious(0.02) benign(0.102) TCGA-B0-5080-01 19 18328978 18328978 G T PDE4C Missense_Mutation p.N437K 0.17 deleterious(0) probably_damaging(0.932) TCGA-B0-5080-01 19 19823197 19823197 T C ZNF14 Missense_Mutation p.K298R 0.08 tolerated(0.05) benign(0.42) TCGA-B0-5080-01 19 35449369 35449369 C T ZNF792 Missense_Mutation p.D464N 0.18 tolerated(0.62) possibly_damaging(0.815) TCGA-B0-5080-01 19 41811645 41811645 C G HNRNPUL1 Missense_Mutation p.P776R 0.20 tolerated_low_confidence(0.05) unknown(0) TCGA-B0-5080-01 19 50906786 50906786 G A POLD1 Missense_Mutation p.V392M 0.16 tolerated(0.07) benign(0.311) TCGA-B0-5080-01 19 50939919 50939919 C T MYBPC2 Missense_Mutation p.R131C 0.13 deleterious(0.01) possibly_damaging(0.857) TCGA-B0-5080-01 19 51958703 51958703 G A SIGLEC8 Silent p.S340S 0.22 TCGA-B0-5080-01 19 53762336 53762336 C A VN1R2 Missense_Mutation p.S236R 0.15 tolerated(0.11) benign(0.185) TCGA-B0-5080-01 19 808433 808433 C T PTBP1 Silent p.D409D 0.18 TCGA-B0-5080-01 1 179052104 179052104 T A TOR3A Missense_Mutation p.Y97N 0.12 deleterious(0.02) possibly_damaging(0.781) TCGA-B0-5080-01 1 214802408 214802408 A T CENPF Missense_Mutation p.K363I 0.10 probably_damaging(0.999) TCGA-B0-5080-01 1 22973841 22973841 C A C1QC Silent p.P101P 0.29 TCGA-B0-5080-01 1 230398728 230398728 T A GALNT2 Silent p.L430L 0.13 TCGA-B0-5080-01 1 28862846 28862846 T A RCC1 Missense_Mutation p.V328E 0.07 deleterious(0.03) benign(0.032) TCGA-B0-5080-01 1 65047954 65047954 A T CACHD1 Missense_Mutation p.Q75L 0.10 tolerated(0.82) benign(0.009) TCGA-B0-5080-01 21 34841149 34841149 C T TMEM50B Missense_Mutation p.C15Y 0.15 deleterious(0.02) possibly_damaging(0.905) TCGA-B0-5080-01 21 43230601 43230601 T A PRDM15 Missense_Mutation p.D1220V 0.15 deleterious(0.01) benign(0.389) TCGA-B0-5080-01 22 42609019 42609019 C A TCF20 Missense_Mutation p.D765Y 0.19 probably_damaging(0.99) TCGA-B0-5080-01 22 45726594 45726594 T C FAM118A Silent p.T211T 0.21 TCGA-B0-5080-01 22 45726595 45726595 C T FAM118A Nonsense_Mutation p.Q212* 0.21 TCGA-B0-5080-01 2 138330034 138330034 G A THSD7B Missense_Mutation p.D1114N 0.11 deleterious(0.01) unknown(0) TCGA-B0-5080-01 2 190738266 190738266 A G PMS1 Missense_Mutation p.N840D 0.16 tolerated(0.35) benign(0.027) TCGA-B0-5080-01 2 207431961 207431961 G T ADAM23 Missense_Mutation p.R470L 0.04 deleterious(0.04) benign(0.058) TCGA-B0-5080-01 2 21256217 21256217 C G APOB Missense_Mutation p.D360H 0.14 benign(0.424) TCGA-B0-5080-01 2 223065882 223065882 G T PAX3 3'UTR 0.15 TCGA-B0-5080-01 2 225637922 225637922 C G DOCK10 Silent p.V2052V 0.16 TCGA-B0-5080-01 2 44201856 44201856 G T LRPPRC Missense_Mutation p.D302E 0.12 tolerated(0.07) possibly_damaging(0.601) TCGA-B0-5080-01 2 60987314 60987314 T C PAPOLG Silent p.I21I 0.16 TCGA-B0-5080-01 3 100595388 100595388 C G ABI3BP Missense_Mutation p.R245T 0.14 deleterious(0) benign(0.003) TCGA-B0-5080-01 3 125726058 125726058 A G SLC41A3 Missense_Mutation p.L422P 0.10 deleterious(0) probably_damaging(0.996) TCGA-B0-5080-01 3 154147489 154147489 C T GPR149 5'UTR 0.18 TCGA-B0-5080-01 3 172046809 172046809 T - FNDC3B Frame_Shift_Del p.C442Vfs*30 0.30 TCGA-B0-5080-01 3 189608582 189608582 T C TP63 Silent p.L553L 0.14 TCGA-B0-5080-01 3 93733283 93733283 T G STX19 Missense_Mutation p.R277S 0.21 tolerated(0.09) benign(0.219) TCGA-B0-5080-01 4 68384984 68384984 C T CENPC Missense_Mutation p.V190I 0.15 tolerated(0.15) benign(0.026) TCGA-B0-5080-01 4 85642627 85642627 A T WDFY3 Missense_Mutation p.S2514T 0.17 tolerated(0.36) benign(0.007) TCGA-B0-5080-01 5 114916795 114916795 C T TMED7-TICAM2 Silent p.E222E 0.06 TCGA-B0-5080-01 5 33951772 33951772 C T SLC45A2 Missense_Mutation p.R348H 0.20 tolerated(1) benign(0.002) TCGA-B0-5080-01 5 71495362 71495362 G C MAP1B Missense_Mutation p.E2060D 0.06 benign(0.064) TCGA-B0-5080-01 5 75886315 75886315 T - IQGAP2 Frame_Shift_Del p.N241Kfs*4 0.20 TCGA-B0-5080-01 5 89986798 89986798 G A GPR98 Silent p.G2297G 0.15 TCGA-B0-5080-01 6 30919792 30919792 C T DPCR1 Missense_Mutation p.P1184L 0.15 tolerated(0.18) benign(0.316) TCGA-B0-5080-01 6 4117641 4117641 C G ECI2 Missense_Mutation p.E310D 0.16 deleterious(0.04) benign(0.279) TCGA-B0-5080-01 6 46977222 46977222 G A GPR110 Missense_Mutation p.T650M 0.14 tolerated(0.3) benign(0.075) TCGA-B0-5080-01 6 89910935 89910935 A T GABRR1 Missense_Mutation p.S75T 0.04 tolerated(0.59) benign(0.361) TCGA-B0-5080-01 7 139097305 139097305 C A LUC7L2 Nonsense_Mutation p.S329* 0.15 TCGA-B0-5080-01 7 42003966 42003966 G C GLI3 Missense_Mutation p.L1569V 0.20 deleterious(0) probably_damaging(0.996) TCGA-B0-5080-01 7 50660657 50660657 C T GRB10 Missense_Mutation p.A593T 0.13 tolerated(0.11) benign(0.037) TCGA-B0-5080-01 8 144733430 144733430 A G ZNF623 Missense_Mutation p.Y463C 0.07 deleterious(0.01) possibly_damaging(0.811) TCGA-B0-5080-01 8 29018273 29018273 C T KIF13B Missense_Mutation p.E461K 0.11 deleterious(0) possibly_damaging(0.89) TCGA-B0-5080-01 X 130409967 130409967 T C IGSF1 Missense_Mutation p.Y960C 0.36 tolerated(0.08) possibly_damaging(0.669) TCGA-B0-5080-01 X 136112591 136112591 A T GPR101 Missense_Mutation p.Y415N 0.24 deleterious(0) probably_damaging(1) TCGA-B0-5080-01 X 77913714 77913714 C A ZCCHC5 Missense_Mutation p.M68I 0.35 tolerated_low_confidence(0.05) benign(0.001) TCGA-B0-5081-01 10 30316404 30316404 C A KIAA1462 Missense_Mutation p.E891D 0.09 tolerated(0.16) benign(0.066) TCGA-B0-5081-01 11 11964635 11964635 G A USP47 Missense_Mutation p.E955K 0.07 tolerated(0.27) benign(0.073) TCGA-B0-5081-01 11 124310503 124310503 G T OR8B8 Missense_Mutation p.T160K 0.15 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-B0-5081-01 11 58723525 58723525 T C GLYATL1 3'UTR 0.14 TCGA-B0-5081-01 12 110006594 110006594 C T MMAB Missense_Mutation p.E91K 0.16 deleterious(0) probably_damaging(0.996) TCGA-B0-5081-01 12 125396655 125396655 T C UBC Missense_Mutation p.I555V 0.05 tolerated(0.14) benign(0.198) TCGA-B0-5081-01 12 52756666 52756666 G A KRT85 Missense_Mutation p.T350M 0.06 tolerated(0.07) probably_damaging(0.91) TCGA-B0-5081-01 12 53566220 53566220 C T CSAD Missense_Mutation p.G112D 0.08 deleterious(0) possibly_damaging(0.76) TCGA-B0-5081-01 12 71977609 71977609 G T LGR5 Nonsense_Mutation p.G607* 0.08 TCGA-B0-5081-01 15 23048907 23048907 C G NIPA1 Silent p.G304G 0.08 TCGA-B0-5081-01 15 42293414 42293414 C T PLA2G4E Missense_Mutation p.R205Q 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-B0-5081-01 16 31073518 31073518 C T ZNF668 Missense_Mutation p.R267H 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-B0-5081-01 16 52473512 52473513 - TGC TOX3 In_Frame_Ins p.Q455dup 0.39 TCGA-B0-5081-01 16 53639370 53639370 C A RPGRIP1L Intron 0.08 TCGA-B0-5081-01 16 67909957 67909957 T A EDC4 Silent p.T64T 0.12 TCGA-B0-5081-01 16 720686 720686 G A RHOT2 Silent p.A184A 0.11 TCGA-B0-5081-01 17 18137246 18137246 C T LLGL1 Missense_Mutation p.R183C 0.07 deleterious(0) benign(0) TCGA-B0-5081-01 17 7416613 7416613 G A POLR2A Missense_Mutation p.S1677N 0.17 unknown(0) TCGA-B0-5081-01 18 51013268 51013268 C A DCC Silent p.R1280R 0.15 TCGA-B0-5081-01 19 49364663 49364663 A C PLEKHA4 Missense_Mutation p.F121V 0.09 deleterious(0) probably_damaging(0.99) TCGA-B0-5081-01 19 50163041 50163041 C - IRF3 Frame_Shift_Del p.C389Afs*45 0.09 TCGA-B0-5081-01 1 152277134 152277134 T A FLG Nonsense_Mutation p.R3410* 0.11 TCGA-B0-5081-01 1 208062095 208062095 C A CD34 Missense_Mutation p.A302S 0.08 deleterious(0) probably_damaging(0.994) TCGA-B0-5081-01 1 216405369 216405369 T C USH2A Silent p.Q973Q 0.11 TCGA-B0-5081-01 22 22842186 22842186 C T ZNF280B Missense_Mutation p.G513E 0.14 tolerated(0.17) benign(0.02) TCGA-B0-5081-01 22 30639581 30639581 C G LIF 3'UTR 0.13 TCGA-B0-5081-01 2 179395676 179395676 C T TTN Silent p.R35222R 0.09 TCGA-B0-5081-01 2 232324938 232324938 T C NCL Missense_Mutation p.E322G 0.06 possibly_damaging(0.707) TCGA-B0-5081-01 2 241631447 241631447 G C AQP12A Silent p.R39R 0.10 TCGA-B0-5081-01 3 10191513 10191513 T C VHL Missense_Mutation p.L169P 0.19 deleterious(0) probably_damaging(0.994) TCGA-B0-5081-01 3 112357811 112357811 G C CCDC80 Missense_Mutation p.D314E 0.11 tolerated(0.77) benign(0) TCGA-B0-5081-01 3 130300741 130300741 G A COL6A6 Missense_Mutation p.R1295Q 0.08 tolerated(0.13) probably_damaging(0.996) TCGA-B0-5081-01 3 191178998 191178998 A G PYDC2 Missense_Mutation p.E16G 0.12 deleterious(0) probably_damaging(0.996) TCGA-B0-5081-01 3 33194429 33194429 G T SUSD5 Missense_Mutation p.D565E 0.09 tolerated(0.77) benign(0.015) TCGA-B0-5081-01 3 47163945 47163945 G T SETD2 Nonsense_Mutation p.C727* 0.08 TCGA-B0-5081-01 3 48475152 48475152 A G CCDC51 Silent p.L148L 0.08 TCGA-B0-5081-01 3 52582216 52582216 C A PBRM1 Nonsense_Mutation p.E1538* 0.07 TCGA-B0-5081-01 3 52613199 52613199 G - PBRM1 Frame_Shift_Del p.P1110Lfs*24 0.09 TCGA-B0-5081-01 4 184600619 184600619 T C TRAPPC11 Silent p.H315H 0.08 TCGA-B0-5081-01 4 2073957 2073957 C A POLN Missense_Mutation p.G863C 0.12 tolerated(0.07) benign(0.048) TCGA-B0-5081-01 5 136974757 136974757 G A KLHL3 Silent p.D368D 0.08 TCGA-B0-5081-01 5 2748714 2748714 A T IRX2 Missense_Mutation p.S370T 0.36 tolerated(0.56) benign(0.036) TCGA-B0-5081-01 5 55247810 55247810 C A IL6ST Missense_Mutation p.G549V 0.11 deleterious(0) probably_damaging(1) TCGA-B0-5081-01 6 167550763 167550763 G A CCR6 Missense_Mutation p.A349T 0.10 tolerated(0.18) benign(0.011) TCGA-B0-5081-01 6 54791297 54791297 G T FAM83B Missense_Mutation p.M191I 0.10 deleterious(0) probably_damaging(0.998) TCGA-B0-5081-01 6 76369015 76369015 A T SENP6 Missense_Mutation p.Q196H 0.09 tolerated(0.57) benign(0) TCGA-B0-5081-01 6 88854490 88854490 G T CNR1 Silent p.V168V 0.12 TCGA-B0-5081-01 6 90481326 90481326 C T MDN1 Missense_Mutation p.V700I 0.05 possibly_damaging(0.818) TCGA-B0-5081-01 7 2953040 2953040 C G CARD11 Missense_Mutation p.R967P 0.12 deleterious(0.02) benign(0.227) TCGA-B0-5081-01 8 145541966 145541966 G A DGAT1 Missense_Mutation p.R212C 0.10 tolerated(0.18) possibly_damaging(0.86) TCGA-B0-5081-01 9 101824283 101824283 C A COL15A1 Missense_Mutation p.L1145M 0.11 tolerated(0.18) probably_damaging(0.998) TCGA-B0-5081-01 9 101824284 101824284 T A COL15A1 Missense_Mutation p.L1145Q 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-B0-5081-01 9 111674608 111674608 C A IKBKAP Missense_Mutation p.W375C 0.07 deleterious(0) probably_damaging(1) TCGA-B0-5081-01 9 111674609 111674609 C A IKBKAP Missense_Mutation p.W375L 0.07 deleterious(0) probably_damaging(1) TCGA-B0-5081-01 9 113265449 113265449 C A SVEP1 Missense_Mutation p.C451F 0.09 probably_damaging(1) TCGA-B0-5081-01 X 100117451 100117451 A C NOX1 Missense_Mutation p.F201V 0.08 deleterious(0) probably_damaging(0.952) TCGA-B0-5081-01 X 128721003 128721003 C T OCRL Missense_Mutation p.P722S 0.10 tolerated(0.35) benign(0.009) TCGA-B0-5081-01 X 2990179 2990179 A T ARSF Missense_Mutation p.I42F 0.12 deleterious(0) possibly_damaging(0.905) TCGA-B0-5081-01 X 31187596 31187596 A T DMD Missense_Mutation p.L3506Q 0.11 possibly_damaging(0.883) TCGA-B0-5081-01 X 73962222 73962222 T - KIAA2022 Frame_Shift_Del p.S724Vfs*5 0.09 TCGA-B0-5081-01 X 77387029 77387029 T C TAF9B 3'UTR 0.22 TCGA-B0-5083-01 10 134016279 134016279 C T DPYSL4 Missense_Mutation p.R471W 0.07 deleterious(0.01) probably_damaging(1) TCGA-B0-5083-01 10 73511020 73511020 T C C10orf54 Missense_Mutation p.E309G 0.18 deleterious(0) possibly_damaging(0.476) TCGA-B0-5083-01 11 250865 250865 G A PSMD13 Silent p.E281E 0.03 TCGA-B0-5083-01 11 5626669 5626669 G C TRIM6 Missense_Mutation p.E236Q 0.09 deleterious(0.01) probably_damaging(0.973) TCGA-B0-5083-01 11 58949292 58949292 G A DTX4 Missense_Mutation p.D98N 0.06 deleterious(0.03) probably_damaging(0.969) TCGA-B0-5083-01 11 62381766 62381778 TGATGGGGTCCCT - ROM1 Frame_Shift_Del p.D210Sfs*102 0.10 TCGA-B0-5083-01 13 20577188 20577188 G A ZMYM2 Missense_Mutation p.G349E 0.05 deleterious(0) probably_damaging(1) TCGA-B0-5083-01 14 23239116 23239116 G A OXA1L Missense_Mutation p.A246T 0.02 deleterious(0) possibly_damaging(0.895) TCGA-B0-5083-01 14 24727524 24727524 C - TGM1 Frame_Shift_Del p.V457Wfs*31 0.17 TCGA-B0-5083-01 14 75420625 75420625 C T PGF Missense_Mutation p.G34S 0.06 tolerated(0.75) benign(0) TCGA-B0-5083-01 16 2882103 2882103 G A ZG16B Silent p.P190P 0.04 TCGA-B0-5083-01 16 54966805 54966805 C T IRX5 Silent p.G215G 0.04 TCGA-B0-5083-01 17 57466804 57466804 G A YPEL2 Missense_Mutation p.C82Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-B0-5083-01 19 38946385 38946385 C T RYR1 Silent p.N595N 0.05 TCGA-B0-5083-01 1 118624114 118624114 G A SPAG17 Silent p.N638N 0.05 TCGA-B0-5083-01 1 169390975 169390975 C G CCDC181 Missense_Mutation p.D232H 0.06 deleterious(0) probably_damaging(1) TCGA-B0-5083-01 1 24202093 24202093 C A CNR2 Missense_Mutation p.W5C 0.37 tolerated(0.05) benign(0.115) TCGA-B0-5083-01 20 35504574 35504574 G C TLDC2 5'UTR 0.09 TCGA-B0-5083-01 20 56073597 56073597 G C CTCFL Intron 0.11 TCGA-B0-5083-01 22 24087079 24087079 G A ZNF70 Silent p.T83T 0.03 TCGA-B0-5083-01 3 195516104 195516104 C T MUC4 Missense_Mutation p.G783R 0.32 unknown(0) TCGA-B0-5083-01 3 47452810 47452810 G A PTPN23 Silent p.L1174L 0.41 TCGA-B0-5083-01 4 114278292 114278292 C A ANK2 Missense_Mutation p.P2840T 0.06 benign(0.341) TCGA-B0-5083-01 4 1954982 1954982 G C WHSC1 Intron 0.16 TCGA-B0-5083-01 4 1954983 1954983 C T WHSC1 Intron 0.16 TCGA-B0-5083-01 4 25780777 25780777 C T SEL1L3 Missense_Mutation p.E836K 0.06 deleterious(0.03) probably_damaging(0.955) TCGA-B0-5083-01 5 140769744 140769744 C G PCDHGB4 Missense_Mutation p.L765V 0.40 tolerated(0.12) benign(0.178) TCGA-B0-5083-01 5 64920038 64920038 C T TRIM23 Missense_Mutation p.G22R 0.13 tolerated(0.07) benign(0.164) TCGA-B0-5083-01 6 117248669 117248669 C T RFX6 Nonsense_Mutation p.Q789* 0.13 TCGA-B0-5083-01 7 48259051 48259051 G C ABCA13 Missense_Mutation p.D130H 0.05 benign(0.32) TCGA-B0-5083-01 8 53543086 53543086 C A RB1CC1 Missense_Mutation p.M1481I 0.21 tolerated(0.08) benign(0.141) TCGA-B0-5083-01 8 70536394 70536394 C T SULF1 Silent p.N604N 0.10 TCGA-B0-5084-01 10 123844355 123844356 - C TACC2 Frame_Shift_Ins p.Q783Pfs*45 0.25 TCGA-B0-5084-01 12 113446979 113446979 G T OAS2 Missense_Mutation p.K661N 0.36 tolerated(0.27) benign(0.248) TCGA-B0-5084-01 12 51693052 51693055 TTTG - BIN2 Frame_Shift_Del p.N178Kfs*9 0.46 TCGA-B0-5084-01 12 57037243 57037243 A G ATP5B Silent p.L246L 0.31 TCGA-B0-5084-01 13 114150177 114150177 A G TMCO3 Missense_Mutation p.H94R 0.31 tolerated(0.17) benign(0.235) TCGA-B0-5084-01 13 114150178 114150178 C A TMCO3 Missense_Mutation p.H94Q 0.31 tolerated(0.12) benign(0.258) TCGA-B0-5084-01 13 42877012 42877012 A C AKAP11 Missense_Mutation p.K1377T 0.42 deleterious(0.01) possibly_damaging(0.652) TCGA-B0-5084-01 13 46077403 46077403 G A COG3 Missense_Mutation p.E505K 0.42 tolerated(0.16) possibly_damaging(0.703) TCGA-B0-5084-01 14 74407656 74407656 G A FAM161B Missense_Mutation p.A521V 0.56 deleterious(0) benign(0.249) TCGA-B0-5084-01 15 65273246 65273246 G A SPG21 Missense_Mutation p.R61W 0.49 deleterious(0) possibly_damaging(0.72) TCGA-B0-5084-01 15 83395032 83395032 C G AC105339.2 3'Flank 0.87 TCGA-B0-5084-01 16 58622799 58622799 C T CNOT1 Silent p.R38R 0.06 TCGA-B0-5084-01 17 39197029 39197029 G C KRTAP1-1 3'UTR 0.35 TCGA-B0-5084-01 17 40864465 40864465 C A EZH1 Missense_Mutation p.A415S 0.36 tolerated(0.48) benign(0) TCGA-B0-5084-01 17 43163945 43163945 G C NMT1 Missense_Mutation p.G104R 0.39 deleterious(0.04) benign(0.067) TCGA-B0-5084-01 19 21239825 21239826 - T ZNF430 Frame_Shift_Ins p.C238Lfs*3 0.33 TCGA-B0-5084-01 19 22271410 22271410 A T ZNF257 Missense_Mutation p.K286N 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-B0-5084-01 19 48343283 48343283 C A CRX 3'UTR 0.57 TCGA-B0-5084-01 19 5641841 5641841 G A SAFB Missense_Mutation p.V144I 0.59 tolerated(0.1) benign(0.024) TCGA-B0-5084-01 19 57802196 57802196 A G ZNF460 Missense_Mutation p.Q96R 0.63 deleterious(0.04) benign(0.225) TCGA-B0-5084-01 19 58490863 58490863 A C ZNF606 Silent p.T395T 0.68 TCGA-B0-5084-01 1 145474332 145474332 G C ANKRD34A Missense_Mutation p.R335P 0.25 tolerated(0.22) possibly_damaging(0.827) TCGA-B0-5084-01 1 156374422 156374422 A T C1orf61 Intron 0.59 TCGA-B0-5084-01 1 166890437 166890437 G A ILDR2 Missense_Mutation p.A464V 0.25 tolerated(0.65) benign(0.262) TCGA-B0-5084-01 1 186413571 186413571 C T PDC Missense_Mutation p.R94H 0.60 deleterious(0) probably_damaging(0.971) TCGA-B0-5084-01 1 211749361 211749361 A T SLC30A1 Missense_Mutation p.I298N 0.38 tolerated(0.47) benign(0.002) TCGA-B0-5084-01 1 223940503 223940503 C G CAPN2 Missense_Mutation p.S327C 0.38 deleterious(0) probably_damaging(0.953) TCGA-B0-5084-01 1 47842514 47842514 T C CMPK1 3'UTR 0.08 TCGA-B0-5084-01 20 14306132 14306132 C G FLRT3 3'UTR 0.10 TCGA-B0-5084-01 20 3669219 3669219 T C SIGLEC1 Silent p.P1706P 0.23 TCGA-B0-5084-01 21 44838289 44838289 G A SIK1 Missense_Mutation p.A532V 0.75 deleterious(0.03) benign(0.053) TCGA-B0-5084-01 22 23243452 23243452 G T IGLC2 Missense_Mutation p.V100L 0.48 benign(0.01) TCGA-B0-5084-01 22 30035203 30035203 T G NF2 Splice_Site p.X121_splice 0.83 TCGA-B0-5084-01 22 39811123 39811123 C T TAB1 Missense_Mutation p.P49L 0.24 tolerated(0.66) benign(0.001) TCGA-B0-5084-01 2 168100111 168100111 G A XIRP2 Missense_Mutation p.E737K 0.41 probably_damaging(0.999) TCGA-B0-5084-01 2 219330803 219330803 T C USP37 Missense_Mutation p.Q799R 0.42 deleterious(0) probably_damaging(0.998) TCGA-B0-5084-01 2 233246013 233246013 C T ALPP Silent p.Y415Y 0.18 TCGA-B0-5084-01 2 233274094 233274094 C T ALPPL2 Silent p.Y412Y 0.14 TCGA-B0-5084-01 2 241531379 241531379 C T CAPN10 Missense_Mutation p.A167V 0.41 deleterious(0) probably_damaging(0.995) TCGA-B0-5084-01 2 25384345 25384345 G A POMC Missense_Mutation p.R137C 0.31 deleterious(0) probably_damaging(0.998) TCGA-B0-5084-01 3 161220146 161220146 C T OTOL1 Missense_Mutation p.P169L 0.46 deleterious(0) unknown(0) TCGA-B0-5084-01 3 17226605 17226605 A C TBC1D5 Missense_Mutation p.H638Q 0.82 deleterious(0) probably_damaging(0.987) TCGA-B0-5084-01 3 185823732 185823732 C A ETV5 Splice_Site 0.35 TCGA-B0-5084-01 3 19554581 19554581 G T KCNH8 Missense_Mutation p.R733S 0.70 tolerated(0.32) benign(0.004) TCGA-B0-5084-01 5 108295006 108295006 C G FER Missense_Mutation p.I538M 0.38 deleterious(0) probably_damaging(0.997) TCGA-B0-5084-01 5 140188641 140188641 C T PCDHA4 Silent p.R623R 0.42 TCGA-B0-5084-01 5 176637152 176637152 T - NSD1 Frame_Shift_Del p.S585Qfs*14 0.46 TCGA-B0-5084-01 5 3599646 3599646 C A IRX1 Missense_Mutation p.A195E 0.42 deleterious(0.04) benign(0.098) TCGA-B0-5084-01 5 39285234 39285234 T G C9 3'UTR 0.39 TCGA-B0-5084-01 5 40959667 40959667 G A C7 Missense_Mutation p.V536I 0.24 tolerated(1) benign(0.002) TCGA-B0-5084-01 5 60188811 60188811 C A ERCC8 Intron 0.39 TCGA-B0-5084-01 5 78427037 78427037 C T BHMT 3'UTR 0.07 TCGA-B0-5084-01 6 170593011 170593011 G A DLL1 Silent p.C452C 0.64 TCGA-B0-5084-01 6 57012950 57012950 C A ZNF451 Missense_Mutation p.H689Q 0.77 tolerated(0.22) benign(0.004) TCGA-B0-5084-01 7 111387452 111387452 C T DOCK4 Silent p.K1479K 0.40 TCGA-B0-5084-01 7 129067007 129067007 T A AHCYL2 3'UTR 0.32 TCGA-B0-5084-01 7 141732690 141732690 T C MGAM Silent p.N550N 0.38 TCGA-B0-5084-01 7 5922122 5922122 A T OCM Splice_Site p.X21_splice 0.29 TCGA-B0-5084-01 7 73661054 73661054 A G RFC2 Silent p.A124A 0.36 TCGA-B0-5084-01 7 97833456 97833456 T C LMTK2 Missense_Mutation p.F1481L 0.43 deleterious(0.03) benign(0.165) TCGA-B0-5084-01 8 109260914 109260914 C A EIF3E Missense_Mutation p.L6F 0.33 deleterious(0) probably_damaging(1) TCGA-B0-5084-01 9 139401769 139401769 G A NOTCH1 Missense_Mutation p.R1211W 0.40 deleterious(0.01) benign(0.258) TCGA-B0-5084-01 9 97209207 97209207 T C HIATL1 Missense_Mutation p.Y278H 0.35 deleterious(0) probably_damaging(0.991) TCGA-B0-5084-01 X 19935180 19935180 T A CXorf23 3'UTR 1.00 TCGA-B0-5084-01 X 19935181 19935181 G T CXorf23 3'UTR 1.00 TCGA-B0-5084-01 X 37553617 37553617 A C XK Missense_Mutation p.Q108H 0.77 tolerated(0.07) probably_damaging(0.984) TCGA-B0-5084-01 X 53106625 53106625 C A GPR173 Silent p.G274G 0.19 TCGA-B0-5085-01 10 124742525 124742525 C T PSTK Nonsense_Mutation p.Q165* 0.26 TCGA-B0-5085-01 10 53667290 53667290 C T PRKG1 Missense_Mutation p.P241L 0.16 deleterious(0) benign(0.426) TCGA-B0-5085-01 10 70141061 70141061 A G RUFY2 Silent p.D380D 0.34 TCGA-B0-5085-01 11 124619711 124619711 C T VSIG2 Missense_Mutation p.G160D 0.31 tolerated(0.28) possibly_damaging(0.886) TCGA-B0-5085-01 11 17098784 17098784 A C RPS13 Missense_Mutation p.L28V 0.32 tolerated(0.16) benign(0.011) TCGA-B0-5085-01 11 17793895 17793895 T C KCNC1 Silent p.A418A 0.36 TCGA-B0-5085-01 11 5068545 5068545 C T OR52J3 Nonsense_Mutation p.R264* 0.18 TCGA-B0-5085-01 11 57089477 57089477 G T TNKS1BP1 5'UTR 0.21 TCGA-B0-5085-01 12 100706229 100706229 A - SCYL2 Frame_Shift_Del p.E217Dfs*25 0.09 TCGA-B0-5085-01 12 123488978 123488978 C T PITPNM2 Silent p.S337S 0.33 TCGA-B0-5085-01 12 50037528 50037528 A G PRPF40B Missense_Mutation p.H812R 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.774) TCGA-B0-5085-01 12 7023184 7023184 C A LRRC23 3'UTR 0.30 TCGA-B0-5085-01 12 9822375 9822375 A C CLEC2D Missense_Mutation p.E15D 0.24 tolerated_low_confidence(0.11) benign(0.006) TCGA-B0-5085-01 13 111102707 111102707 C A COL4A2 Silent p.P415P 0.28 TCGA-B0-5085-01 15 23811752 23811752 C A MKRN3 Missense_Mutation p.H275N 0.27 deleterious(0) possibly_damaging(0.532) TCGA-B0-5085-01 15 38616982 38616982 A G SPRED1 Missense_Mutation p.N132S 0.30 tolerated(0.14) benign(0.001) TCGA-B0-5085-01 15 42741987 42741987 A G ZNF106 Missense_Mutation p.L805P 0.03 deleterious(0.03) probably_damaging(0.983) TCGA-B0-5085-01 16 3451937 3451937 T C ZNF174 5'UTR 0.35 TCGA-B0-5085-01 16 50257298 50257298 G A PAPD5 Missense_Mutation p.G446S 0.27 tolerated(0.06) possibly_damaging(0.842) TCGA-B0-5085-01 16 70816984 70816984 T C VAC14 Missense_Mutation p.K255E 0.14 tolerated(0.07) possibly_damaging(0.629) TCGA-B0-5085-01 17 18049342 18049342 G A MYO15A Missense_Mutation p.A2144T 0.21 unknown(0) TCGA-B0-5085-01 17 40362479 40362479 A C STAT5B Missense_Mutation p.W573G 0.03 deleterious(0) possibly_damaging(0.893) TCGA-B0-5085-01 17 73998146 73998146 T A CDK3 Missense_Mutation p.F80I 0.30 deleterious(0) probably_damaging(1) TCGA-B0-5085-01 18 51863590 51863590 G T STARD6 Missense_Mutation p.P58T 0.33 tolerated(0.56) benign(0.003) TCGA-B0-5085-01 19 18886547 18886547 C A CRTC1 Missense_Mutation p.L553I 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-B0-5085-01 19 2422196 2422196 G A TMPRSS9 Silent p.Q799Q 0.29 TCGA-B0-5085-01 19 39991266 39991266 T A DLL3 Silent p.S121S 0.07 TCGA-B0-5085-01 19 48248796 48248796 C G GLTSCR2 5'UTR 0.07 TCGA-B0-5085-01 19 49129225 49129225 G A SPHK2 Silent p.P39P 0.41 TCGA-B0-5085-01 19 51410162 51410162 C T KLK4 3'UTR 0.10 TCGA-B0-5085-01 1 10421772 10421772 C T KIF1B Missense_Mutation p.A1352V 0.33 tolerated(0.21) probably_damaging(0.987) TCGA-B0-5085-01 1 113641369 113641369 T A LRIG2 Silent p.A378A 0.05 TCGA-B0-5085-01 1 20141319 20141319 G C RNF186 Silent p.P92P 0.30 TCGA-B0-5085-01 1 29611375 29611375 G T PTPRU Missense_Mutation p.R771L 0.17 deleterious(0.04) possibly_damaging(0.511) TCGA-B0-5085-01 1 44401676 44401676 G A ARTN Intron 0.64 TCGA-B0-5085-01 20 2312884 2312884 A G TGM3 Missense_Mutation p.I524V 0.18 tolerated(0.15) possibly_damaging(0.577) TCGA-B0-5085-01 20 50092197 50092197 G - NFATC2 Frame_Shift_Del p.L445Sfs*48 0.29 TCGA-B0-5085-01 22 30659850 30659850 C G OSM 3'UTR 0.28 TCGA-B0-5085-01 22 40343157 40343157 A T GRAP2 Missense_Mutation p.E16V 0.32 deleterious(0) probably_damaging(0.992) TCGA-B0-5085-01 22 43464519 43464519 T G TTLL1 Missense_Mutation p.T134P 0.29 deleterious(0.03) benign(0.169) TCGA-B0-5085-01 2 174223477 174223477 T A CDCA7 Missense_Mutation p.F20Y 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-B0-5085-01 2 179435668 179435668 G C TTN Missense_Mutation p.T25064S 0.12 TCGA-B0-5085-01 2 201684787 201684787 A C BZW1 Missense_Mutation p.Y382S 0.30 deleterious(0) possibly_damaging(0.823) TCGA-B0-5085-01 2 27716993 27716993 A G FNDC4 Silent p.N86N 0.31 TCGA-B0-5085-01 2 71351338 71351338 C A MCEE Nonsense_Mutation p.E126* 0.15 TCGA-B0-5085-01 3 10183745 10183746 - CC VHL Frame_Shift_Ins p.Q73Pfs*87 0.37 TCGA-B0-5085-01 3 128516883 128516883 A T RAB7A Missense_Mutation p.M51L 0.32 tolerated(0.89) benign(0.001) TCGA-B0-5085-01 3 141011820 141011820 G T ACPL2 Nonsense_Mutation p.E406* 0.31 TCGA-B0-5085-01 3 156421359 156421359 T A TIPARP Missense_Mutation p.V465D 0.13 deleterious(0) probably_damaging(0.99) TCGA-B0-5085-01 3 160945064 160945064 A - NMD3 Frame_Shift_Del p.Q70Rfs*4 0.21 TCGA-B0-5085-01 3 167727938 167727938 A - GOLIM4 3'UTR 0.31 TCGA-B0-5085-01 3 197476818 197476818 C T FYTTD1 5'UTR 0.30 TCGA-B0-5085-01 3 38950679 38950679 G A SCN11A Missense_Mutation p.R370C 0.06 deleterious(0) probably_damaging(0.956) TCGA-B0-5085-01 3 49169156 49169156 T A LAMB2 Missense_Mutation p.T154S 0.28 deleterious(0) probably_damaging(0.999) TCGA-B0-5085-01 3 52643828 52643828 T A PBRM1 Nonsense_Mutation p.R690* 0.47 TCGA-B0-5085-01 3 53908276 53908276 G A ACTR8 Silent p.L343L 0.30 TCGA-B0-5085-01 3 53908279 53908279 G A ACTR8 Missense_Mutation p.L342F 0.30 tolerated(0.05) benign(0.315) TCGA-B0-5085-01 4 174253220 174253220 A T HMGB2 3'UTR 0.08 TCGA-B0-5085-01 4 39245924 39245924 C A WDR19 Missense_Mutation p.D826E 0.04 deleterious(0) probably_damaging(0.936) TCGA-B0-5085-01 5 139941387 139941387 G A APBB3 Intron 0.29 TCGA-B0-5085-01 5 140553926 140553926 G A PCDHB7 Missense_Mutation p.V504I 0.09 tolerated_low_confidence(0.42) benign(0.026) TCGA-B0-5085-01 5 145878250 145878250 G A TCERG1 Splice_Site p.X794_splice 0.08 TCGA-B0-5085-01 5 149583511 149583511 G C SLC6A7 Missense_Mutation p.E414D 0.10 deleterious(0.02) probably_damaging(0.982) TCGA-B0-5085-01 5 161520982 161520982 G T GABRG2 Nonsense_Mutation p.G86* 0.11 TCGA-B0-5085-01 5 171789871 171789871 C T SH3PXD2B Missense_Mutation p.G144S 0.16 tolerated(0.31) benign(0.014) TCGA-B0-5085-01 5 55259325 55259325 T C IL6ST Missense_Mutation p.N223S 0.30 tolerated(0.74) benign(0.003) TCGA-B0-5085-01 5 66448561 66448561 C G MAST4 Missense_Mutation p.S1131C 0.12 probably_damaging(0.995) TCGA-B0-5085-01 5 66479404 66479404 C T CD180 Missense_Mutation p.E423K 0.29 tolerated(0.08) benign(0.11) TCGA-B0-5085-01 6 108279240 108279240 C A SEC63 5'UTR 0.29 TCGA-B0-5085-01 6 117681074 117681074 T C ROS1 Silent p.R1182R 0.24 TCGA-B0-5085-01 6 15496611 15496611 A T JARID2 Missense_Mutation p.K385N 0.36 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-B0-5085-01 6 169648851 169648851 G C THBS2 Silent p.L90L 0.31 TCGA-B0-5085-01 6 44270802 44270802 C A AARS2 Splice_Site p.X752_splice 0.09 TCGA-B0-5085-01 7 127975595 127975595 A C RBM28 Splice_Site p.X316_splice 0.17 TCGA-B0-5085-01 7 150771368 150771369 - T SLC4A2 Frame_Shift_Ins p.P928Sfs*28 0.33 TCGA-B0-5085-01 7 79764504 79764504 A T GNAI1 Nonsense_Mutation p.K10* 0.39 TCGA-B0-5085-01 8 145066243 145066243 A T GRINA Silent p.A230A 0.30 TCGA-B0-5085-01 8 1728427 1728427 C G CLN8 Silent p.S185S 0.18 TCGA-B0-5085-01 8 38677391 38677391 A C TACC1 Missense_Mutation p.E210A 0.15 deleterious(0.02) possibly_damaging(0.493) TCGA-B0-5085-01 8 41800216 41800216 T G KAT6A Intron 0.27 TCGA-B0-5085-01 8 76456146 76456146 A G HNF4G Silent p.A63A 0.30 TCGA-B0-5085-01 8 77617698 77617698 G A ZFHX4 Missense_Mutation p.E459K 0.38 benign(0.006) TCGA-B0-5085-01 9 140379177 140379178 - A PNPLA7 Frame_Shift_Ins p.G737Wfs*54 0.32 TCGA-B0-5085-01 9 33443673 33443673 G A AQP3 Intron 0.22 TCGA-B0-5085-01 9 37424868 37424868 A G GRHPR Missense_Mutation p.D37G 0.24 deleterious(0.04) benign(0.127) TCGA-B0-5085-01 9 72965029 72965029 G T SMC5 Splice_Site p.X964_splice 0.06 TCGA-B0-5085-01 X 130416649 130416649 C A IGSF1 Missense_Mutation p.V339L 0.17 tolerated(0.09) benign(0.062) TCGA-B0-5085-01 X 17762279 17762279 G A SCML1 5'UTR 0.32 TCGA-B0-5085-01 X 19379616 19379617 - A MAP3K15 Frame_Shift_Ins p.E1259* 0.29 TCGA-B0-5085-01 X 23018221 23018221 G A DDX53 Missense_Mutation p.R16K 0.24 tolerated_low_confidence(0.06) benign(0.237) TCGA-B0-5085-01 X 27766433 27766433 G T DCAF8L2 Missense_Mutation p.G474V 0.35 deleterious(0) possibly_damaging(0.847) TCGA-B0-5085-01 X 41203496 41203496 C T DDX3X Missense_Mutation p.S290L 0.30 deleterious(0.02) possibly_damaging(0.613) TCGA-B0-5085-01 X 46917973 46917973 A C JADE3 Missense_Mutation p.K656Q 0.35 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-B0-5085-01 X 53674403 53674403 C G HUWE1 Missense_Mutation p.E87Q 0.16 benign(0.103) TCGA-B0-5085-01 X 70784541 70784541 G A OGT Missense_Mutation p.V843I 0.35 tolerated(0.35) benign(0.282) TCGA-B0-5085-01 X 71831023 71831023 C A PHKA1 Missense_Mutation p.W794L 0.29 deleterious(0.02) possibly_damaging(0.464) TCGA-B0-5085-01 X 72433729 72433729 G C NAP1L2 Missense_Mutation p.D200E 0.06 tolerated(0.27) possibly_damaging(0.682) TCGA-B0-5085-01 X 78011131 78011131 G T LPAR4 Missense_Mutation p.M255I 0.30 deleterious(0.03) benign(0.001) TCGA-B0-5088-01 10 123730567 123730569 CTT - NSMCE4A In_Frame_Del p.E129del 0.19 TCGA-B0-5088-01 10 126683133 126683133 G A CTBP2 Silent p.L769L 0.18 TCGA-B0-5088-01 10 27437878 27437878 T C YME1L1 Missense_Mutation p.Q42R 0.26 tolerated_low_confidence(0.61) benign(0.017) TCGA-B0-5088-01 10 89473886 89473886 A G PAPSS2 Missense_Mutation p.E156G 0.23 deleterious(0) probably_damaging(1) TCGA-B0-5088-01 10 98282079 98282079 C A TM9SF3 Missense_Mutation p.G571C 0.07 deleterious(0) probably_damaging(0.995) TCGA-B0-5088-01 11 108382192 108382192 C G EXPH5 Missense_Mutation p.A1348P 0.26 deleterious(0.01) possibly_damaging(0.877) TCGA-B0-5088-01 11 46742358 46742358 C T F2 Missense_Mutation p.T95M 0.07 tolerated(0.11) benign(0.007) TCGA-B0-5088-01 11 55653066 55653066 A T TRIM51 Missense_Mutation p.E54D 0.17 tolerated(0.23) benign(0.426) TCGA-B0-5088-01 11 59812162 59812162 C G OOSP2 Missense_Mutation p.L88V 0.03 tolerated(0.49) benign(0.084) TCGA-B0-5088-01 11 62496235 62496235 T A TTC9C 5'UTR 0.27 TCGA-B0-5088-01 11 62621378 62621378 T G SLC3A2 5'Flank 0.13 TCGA-B0-5088-01 12 117768660 117768660 A G NOS1 Missense_Mutation p.L72S 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-B0-5088-01 12 21960403 21960403 G A ABCC9 Silent p.V1442V 0.09 TCGA-B0-5088-01 12 72274276 72274276 C G TBC1D15 Missense_Mutation p.Q78E 0.30 tolerated(0.16) benign(0.142) TCGA-B0-5088-01 12 78531145 78531145 G A NAV3 Missense_Mutation p.V1544I 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-B0-5088-01 12 78531146 78531146 G T NAV3 Splice_Site p.X1544_splice 0.06 TCGA-B0-5088-01 13 42361642 42361642 T G VWA8 Missense_Mutation p.N701H 0.25 tolerated(0.07) benign(0.289) TCGA-B0-5088-01 14 59113096 59113096 G A DACT1 Silent p.K585K 0.15 TCGA-B0-5088-01 15 59406998 59406998 G A CCNB2 Missense_Mutation p.V174I 0.20 tolerated(0.16) benign(0.224) TCGA-B0-5088-01 15 72848195 72848195 T C ARIH1 Silent p.T228T 0.19 TCGA-B0-5088-01 15 74748922 74748922 T C UBL7 Missense_Mutation p.K92R 0.04 tolerated(0.19) benign(0.022) TCGA-B0-5088-01 15 75682103 75682103 C A SIN3A Missense_Mutation p.D971Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-B0-5088-01 16 31212808 31212808 T C PYCARD 3'UTR 0.31 TCGA-B0-5088-01 17 40848118 40848118 G C CNTNAP1 Missense_Mutation p.G1141A 0.18 tolerated(0.07) probably_damaging(1) TCGA-B0-5088-01 17 48272628 48272628 C T COL1A1 Missense_Mutation p.G422S 0.29 unknown(0) TCGA-B0-5088-01 17 64875148 64875148 G A CACNG5 Silent p.L85L 0.24 TCGA-B0-5088-01 18 48190332 48190332 G A MAPK4 Missense_Mutation p.A2T 0.19 deleterious(0) probably_damaging(0.989) TCGA-B0-5088-01 19 11762663 11762663 G A ZNF833P RNA 0.15 TCGA-B0-5088-01 19 42482093 42482093 G C ATP1A3 Missense_Mutation p.N659K 0.20 tolerated(0.09) probably_damaging(0.998) TCGA-B0-5088-01 19 51559929 51559929 C T KLK13 Missense_Mutation p.R250H 0.27 tolerated(0.07) probably_damaging(0.996) TCGA-B0-5088-01 1 109366227 109366227 G A AKNAD1 Missense_Mutation p.P674S 0.10 tolerated(0.43) benign(0.004) TCGA-B0-5088-01 1 145684643 145684643 C G RNF115 Missense_Mutation p.S211C 0.05 deleterious(0) probably_damaging(0.984) TCGA-B0-5088-01 1 151372944 151372945 - T PSMB4 Frame_Shift_Ins p.H126Tfs*4 0.29 TCGA-B0-5088-01 1 171756920 171756920 C G METTL13 Missense_Mutation p.Q387E 0.20 tolerated(0.17) benign(0.017) TCGA-B0-5088-01 1 202777266 202777266 G C KDM5B Silent p.A56A 0.10 TCGA-B0-5088-01 1 235894212 235894212 A C LYST Missense_Mutation p.F2993L 0.07 deleterious(0) probably_damaging(0.965) TCGA-B0-5088-01 1 240370625 240370625 A G FMN2 Missense_Mutation p.Q838R 0.10 unknown(0) TCGA-B0-5088-01 1 24432548 24432548 T C MYOM3 Missense_Mutation p.E141G 0.17 tolerated(0.4) benign(0.044) TCGA-B0-5088-01 1 38059398 38059398 G A GNL2 Silent p.I38I 0.17 TCGA-B0-5088-01 20 37580732 37580732 C T FAM83D Nonsense_Mutation p.Q473* 0.20 TCGA-B0-5088-01 20 40049199 40049199 C A CHD6 Missense_Mutation p.D2026Y 0.05 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-B0-5088-01 21 16338035 16338035 G A NRIP1 Nonsense_Mutation p.Q827* 0.10 TCGA-B0-5088-01 21 34066598 34066598 A T SYNJ1 Silent p.V282V 0.08 TCGA-B0-5088-01 21 46321408 46321408 G A ITGB2 Missense_Mutation p.P247L 0.12 tolerated(0.17) benign(0.011) TCGA-B0-5088-01 2 135711411 135711411 A G CCNT2 Silent p.E462E 0.15 TCGA-B0-5088-01 2 141773379 141773379 T G LRP1B Silent p.S692S 0.09 TCGA-B0-5088-01 2 170371427 170371427 A T KLHL41 Silent p.S444S 0.13 TCGA-B0-5088-01 2 179253841 179253841 C G OSBPL6 Silent p.T779T 0.20 TCGA-B0-5088-01 2 219296898 219296898 G A VIL1 Missense_Mutation p.V445I 0.11 tolerated(0.94) benign(0.001) TCGA-B0-5088-01 2 219528676 219528676 C - RNF25 3'UTR 0.11 TCGA-B0-5088-01 2 61336340 61336340 G C KIAA1841 Missense_Mutation p.Q551H 0.08 deleterious(0) benign(0.158) TCGA-B0-5088-01 2 71299785 71299785 A G NAGK Missense_Mutation p.I170V 0.14 deleterious(0.04) benign(0.202) TCGA-B0-5088-01 3 10188240 10188240 T A VHL Missense_Mutation p.L128H 0.34 deleterious(0) probably_damaging(1) TCGA-B0-5088-01 3 128060617 128060617 G C EEFSEC Missense_Mutation p.R443P 0.24 deleterious(0) probably_damaging(1) TCGA-B0-5088-01 3 128060618 128060618 G T EEFSEC Silent p.R443R 0.25 TCGA-B0-5088-01 3 164907318 164907318 A G SLITRK3 Missense_Mutation p.L434S 0.10 deleterious(0) probably_damaging(1) TCGA-B0-5088-01 3 185393190 185393190 T A IGF2BP2 Missense_Mutation p.E322V 0.21 deleterious(0) probably_damaging(0.962) TCGA-B0-5088-01 3 391066 391066 C A CHL1 Missense_Mutation p.N291K 0.30 tolerated(0.92) benign(0.002) TCGA-B0-5088-01 3 52443866 52443866 C G BAP1 Missense_Mutation p.S10T 0.17 deleterious(0) probably_damaging(0.995) TCGA-B0-5088-01 3 63973813 63973813 A - ATXN7 Frame_Shift_Del p.T393Pfs*6 0.26 TCGA-B0-5088-01 3 97887843 97887843 A G OR5H15 Silent p.Q100Q 0.19 TCGA-B0-5088-01 4 20490577 20490577 G A SLIT2 Silent p.E249E 0.08 TCGA-B0-5088-01 5 140248769 140248769 G A PCDHA11 Silent p.G27G 0.33 TCGA-B0-5088-01 5 169810630 169810630 T C KCNMB1 Intron 0.16 TCGA-B0-5088-01 6 110763747 110763747 G T SLC22A16 Missense_Mutation p.L295I 0.17 deleterious(0) probably_damaging(1) TCGA-B0-5088-01 6 111694714 111694714 G C REV3L Missense_Mutation p.S1615C 0.06 tolerated(0.13) benign(0.014) TCGA-B0-5088-01 6 44116543 44116550 TCCGAGGC - TMEM63B Frame_Shift_Del p.R426Hfs*74 0.17 TCGA-B0-5088-01 6 44221384 44221384 T C HSP90AB1 3'UTR 0.29 TCGA-B0-5088-01 6 49700907 49700907 C T CRISP3 Splice_Site p.X197_splice 0.07 TCGA-B0-5088-01 6 54095578 54095578 G T MLIP Missense_Mutation p.A394S 0.18 deleterious(0.05) probably_damaging(0.974) TCGA-B0-5088-01 6 55214903 55214903 G T GFRAL Missense_Mutation p.E110D 0.13 tolerated(0.05) benign(0.005) TCGA-B0-5088-01 6 56399926 56399926 T C DST Silent p.E3022E 0.26 TCGA-B0-5088-01 7 128494133 128494133 G A FLNC Missense_Mutation p.R2197Q 0.15 tolerated(0.31) benign(0) TCGA-B0-5088-01 7 151265857 151265862 CCACTG - PRKAG2 In_Frame_Del p.I391_G393delinsM 0.24 TCGA-B0-5088-01 7 155599128 155599128 C A SHH Nonsense_Mutation p.E142* 0.05 TCGA-B0-5088-01 7 2260622 2260622 G C MAD1L1 Intron 0.20 TCGA-B0-5088-01 7 99084910 99084910 T C ZNF789 Silent p.H359H 0.16 TCGA-B0-5088-01 7 99811404 99811404 T C STAG3 Missense_Mutation p.L1215S 0.08 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-B0-5088-01 8 124658127 124658127 G A KLHL38 Missense_Mutation p.T533M 0.06 tolerated(0.22) benign(0.067) TCGA-B0-5088-01 8 145584463 145584463 G A SLC52A2 Missense_Mutation p.V376M 0.25 deleterious(0) probably_damaging(0.994) TCGA-B0-5088-01 8 145722670 145722670 C T PPP1R16A Silent p.A31A 0.16 TCGA-B0-5088-01 9 107618219 107618219 C G ABCA1 Intron 0.14 TCGA-B0-5088-01 9 123384993 123384993 T C MEGF9 Missense_Mutation p.I282V 0.28 deleterious(0.03) benign(0.001) TCGA-B0-5088-01 9 131586388 131586388 C A C9orf114 Missense_Mutation p.G293C 0.15 deleterious(0) probably_damaging(1) TCGA-B0-5088-01 9 2718197 2718197 G A KCNV2 Missense_Mutation p.R153H 0.17 deleterious(0) probably_damaging(1) TCGA-B0-5088-01 X 17768309 17768309 G T SCML1 Missense_Mutation p.G200V 0.20 tolerated(0.29) possibly_damaging(0.473) TCGA-B0-5088-01 X 84510342 84510342 G A ZNF711 Missense_Mutation p.D53N 0.11 tolerated_low_confidence(0.1) benign(0.318) TCGA-B0-5092-01 10 124594540 124594540 C T CUZD1 Missense_Mutation p.R355H 0.09 deleterious(0.01) benign(0.373) TCGA-B0-5092-01 10 12833227 12833228 - A CAMK1D Frame_Shift_Ins p.I213Nfs*11 0.20 TCGA-B0-5092-01 10 43678701 43678701 G T CSGALNACT2 Missense_Mutation p.G447V 0.04 deleterious(0) possibly_damaging(0.481) TCGA-B0-5092-01 10 5011032 5011032 G T AKR1C1 Missense_Mutation p.D156Y 0.09 deleterious(0) possibly_damaging(0.679) TCGA-B0-5092-01 11 118656898 118656898 C T DDX6 Silent p.L21L 0.19 TCGA-B0-5092-01 11 33363111 33363111 A G HIPK3 Silent p.A592A 0.20 TCGA-B0-5092-01 11 65827424 65827424 C T SF3B2 Missense_Mutation p.P525S 0.12 deleterious(0) probably_damaging(1) TCGA-B0-5092-01 11 94040428 94040428 G A FOLR4 Missense_Mutation p.C142Y 0.14 deleterious(0) probably_damaging(1) TCGA-B0-5092-01 12 104182685 104182685 C G NT5DC3 Missense_Mutation p.K344N 0.14 tolerated(0.32) possibly_damaging(0.735) TCGA-B0-5092-01 12 10588502 10588502 T A KLRC2 Missense_Mutation p.K28N 0.13 tolerated(0.19) benign(0.169) TCGA-B0-5092-01 12 113565939 113565939 T A RASAL1 Missense_Mutation p.E56V 0.09 deleterious(0) probably_damaging(1) TCGA-B0-5092-01 12 121868005 121868005 G A KDM2B 3'UTR 0.08 TCGA-B0-5092-01 12 54893217 54893217 A T NCKAP1L Nonsense_Mutation p.K61* 0.11 TCGA-B0-5092-01 12 76424988 76424988 C T PHLDA1 Silent p.G178G 0.26 TCGA-B0-5092-01 13 49852533 49852533 C T CDADC1 Silent p.Y366Y 0.18 TCGA-B0-5092-01 14 105414997 105414997 T C AHNAK2 Missense_Mutation p.D2264G 0.07 possibly_damaging(0.908) TCGA-B0-5092-01 15 40299258 40299258 T - EIF2AK4 Frame_Shift_Del p.L1134* 0.16 TCGA-B0-5092-01 15 43322177 43322177 G A UBR1 Missense_Mutation p.P782S 0.05 tolerated(0.1) benign(0.118) TCGA-B0-5092-01 15 72191150 72191150 T C MYO9A Missense_Mutation p.N1232D 0.04 tolerated_low_confidence(0.67) benign(0) TCGA-B0-5092-01 16 24788568 24788568 G A TNRC6A Missense_Mutation p.A160T 0.19 tolerated(0.13) benign(0.056) TCGA-B0-5092-01 16 28847383 28847383 G - ATXN2L Frame_Shift_Del p.V1010Cfs*87 0.19 TCGA-B0-5092-01 16 3640657 3640657 G T SLX4 Silent p.I994I 0.18 TCGA-B0-5092-01 16 58437126 58437126 C A GINS3 Missense_Mutation p.P143H 0.07 deleterious(0) probably_damaging(0.954) TCGA-B0-5092-01 16 7568250 7568250 C T RBFOX1 Silent p.A63A 0.13 TCGA-B0-5092-01 17 30302576 30302576 A T SUZ12 Nonsense_Mutation p.K223* 0.12 TCGA-B0-5092-01 17 3629514 3629514 G T GSG2 Missense_Mutation p.C762F 0.05 tolerated(0.08) benign(0.052) TCGA-B0-5092-01 17 48538731 48538731 G C ACSF2 Silent p.L151L 0.16 TCGA-B0-5092-01 17 7579396 7579396 G A TP53 Silent p.V97V 0.24 TCGA-B0-5092-01 18 42532882 42532882 G T SETBP1 Missense_Mutation p.A1193S 0.06 tolerated_low_confidence(0.76) benign(0.003) TCGA-B0-5092-01 18 43262443 43262443 G C SLC14A2 Missense_Mutation p.A908P 0.04 tolerated(0.11) benign(0.005) TCGA-B0-5092-01 19 12222351 12222351 G A ZNF788 5'UTR 0.13 TCGA-B0-5092-01 19 33608751 33608751 C T GPATCH1 Silent p.D739D 0.12 TCGA-B0-5092-01 19 35540270 35540270 C T HPN Silent p.A31A 0.04 TCGA-B0-5092-01 19 53644593 53644593 T C ZNF347 Silent p.A497A 0.03 TCGA-B0-5092-01 19 9065878 9065878 T C MUC16 Missense_Mutation p.S7190G 0.15 unknown(0) TCGA-B0-5092-01 1 110766481 110766481 C T KCNC4 Missense_Mutation p.P525L 0.18 tolerated(0.07) possibly_damaging(0.88) TCGA-B0-5092-01 1 113616152 113616152 C T LRIG2 Missense_Mutation p.L42F 0.09 tolerated(0.42) benign(0.068) TCGA-B0-5092-01 1 12711197 12711197 T C AADACL4 Missense_Mutation p.L75S 0.10 deleterious(0) benign(0.133) TCGA-B0-5092-01 1 156212968 156212968 G A PMF1-BGLAP 3'UTR 0.16 TCGA-B0-5092-01 1 169565278 169565278 A G SELP Silent p.F662F 0.28 TCGA-B0-5092-01 1 247769356 247769356 C T OR2G3 Silent p.L157L 0.05 TCGA-B0-5092-01 1 85112985 85112985 C T SSX2IP 3'UTR 0.18 TCGA-B0-5092-01 1 94946103 94946103 A G ABCD3 Missense_Mutation p.I256M 0.15 tolerated(0.06) benign(0.098) TCGA-B0-5092-01 1 97564120 97564120 C T DPYD Silent p.L897L 0.24 TCGA-B0-5092-01 20 2776408 2776408 C A CPXM1 Missense_Mutation p.E519D 0.06 deleterious(0.04) benign(0.398) TCGA-B0-5092-01 20 3759097 3759097 C T SPEF1 Missense_Mutation p.E192K 0.17 deleterious(0.03) possibly_damaging(0.767) TCGA-B0-5092-01 21 33074643 33074643 T C SCAF4 Missense_Mutation p.K124R 0.10 possibly_damaging(0.652) TCGA-B0-5092-01 21 37445149 37445149 T G CBR1 Missense_Mutation p.F268C 0.17 deleterious(0) probably_damaging(0.966) TCGA-B0-5092-01 22 17662339 17662339 G T CECR1 3'UTR 0.04 TCGA-B0-5092-01 22 32482294 32482294 T C SLC5A1 Missense_Mutation p.V370A 0.16 deleterious(0) possibly_damaging(0.897) TCGA-B0-5092-01 22 42605745 42605745 T A TCF20 Missense_Mutation p.E1856V 0.08 probably_damaging(1) TCGA-B0-5092-01 22 45929741 45929741 G A FBLN1 Silent p.G249G 0.10 TCGA-B0-5092-01 2 113074843 113074843 A C ZC3H6 Missense_Mutation p.K304Q 0.16 deleterious(0) probably_damaging(0.991) TCGA-B0-5092-01 2 128927880 128927880 G T UGGT1 Silent p.P980P 0.21 TCGA-B0-5092-01 2 141777522 141777522 G A LRP1B Missense_Mutation p.P647S 0.09 possibly_damaging(0.876) TCGA-B0-5092-01 2 152512422 152512425 TATT - NEB Frame_Shift_Del p.K2203Tfs*13 0.14 TCGA-B0-5092-01 2 158406767 158406767 C T ACVR1C Missense_Mutation p.D228N 0.05 deleterious(0) probably_damaging(0.999) TCGA-B0-5092-01 2 179474417 179474417 G T TTN Missense_Mutation p.P17245T 0.10 TCGA-B0-5092-01 2 179571283 179571283 G T TTN Missense_Mutation p.A9773E 0.05 TCGA-B0-5092-01 2 26667780 26667780 G A DRC1 Missense_Mutation p.A454T 0.06 deleterious(0.04) benign(0.168) TCGA-B0-5092-01 2 32640716 32640716 C A BIRC6 Nonsense_Mutation p.S786* 0.12 TCGA-B0-5092-01 3 10191472 10191473 - TATA VHL Frame_Shift_Ins p.T157Ifs*18 0.21 TCGA-B0-5092-01 3 132257175 132257175 A T DNAJC13 3'UTR 0.20 TCGA-B0-5092-01 3 52439913 52439913 G A BAP1 Nonsense_Mutation p.Q267* 0.24 TCGA-B0-5092-01 3 52440295 52440295 G A BAP1 Nonsense_Mutation p.Q253* 0.09 TCGA-B0-5092-01 4 126398472 126398472 A G FAT4 Silent p.A4152A 0.08 TCGA-B0-5092-01 4 140046348 140046348 G C ELF2 Missense_Mutation p.Q70E 0.05 tolerated(0.46) benign(0.228) TCGA-B0-5092-01 4 184366710 184366710 A G CDKN2AIP Missense_Mutation p.K99E 0.11 deleterious(0) unknown(0) TCGA-B0-5092-01 4 69795773 69795773 G C UGT2A3 Missense_Mutation p.H448D 0.11 deleterious(0) probably_damaging(0.951) TCGA-B0-5092-01 4 7533341 7533341 G T SORCS2 Silent p.P211P 0.14 TCGA-B0-5092-01 4 7533342 7533342 A T SORCS2 Missense_Mutation p.T212S 0.14 tolerated(0.06) benign(0.007) TCGA-B0-5092-01 5 159834605 159834605 A G SLU7 Missense_Mutation p.Y335H 0.06 tolerated(0.46) probably_damaging(0.982) TCGA-B0-5092-01 5 176026768 176026768 C T GPRIN1 Missense_Mutation p.R23Q 0.10 tolerated_low_confidence(1) benign(0) TCGA-B0-5092-01 5 3599934 3599934 C A IRX1 Missense_Mutation p.P291Q 0.29 tolerated(0.12) probably_damaging(0.993) TCGA-B0-5092-01 5 52954452 52954452 A C NDUFS4 Missense_Mutation p.N141T 0.04 deleterious(0) probably_damaging(0.948) TCGA-B0-5092-01 5 54401368 54401368 T G GZMA Missense_Mutation p.L46R 0.03 deleterious(0) probably_damaging(0.999) TCGA-B0-5092-01 5 64892965 64892965 C T TRIM23 Missense_Mutation p.V408I 0.14 deleterious(0.05) possibly_damaging(0.766) TCGA-B0-5092-01 6 10529342 10529342 A T GCNT2 Missense_Mutation p.K66N 0.16 tolerated(0.39) benign(0.096) TCGA-B0-5092-01 6 147124301 147124301 T C ADGB Intron 0.11 TCGA-B0-5092-01 6 147124303 147124303 C G ADGB Intron 0.12 TCGA-B0-5092-01 6 27858524 27858524 G A HIST1H3J Missense_Mutation p.A16V 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.735) TCGA-B0-5092-01 6 28053590 28053590 A T ZNF165 Missense_Mutation p.E111V 0.18 deleterious(0) possibly_damaging(0.745) TCGA-B0-5092-01 6 532529 532529 A G EXOC2 Missense_Mutation p.S774P 0.17 deleterious(0.04) probably_damaging(0.91) TCGA-B0-5092-01 6 97247000 97247000 C A GPR63 Missense_Mutation p.W203L 0.20 deleterious(0) probably_damaging(0.999) TCGA-B0-5092-01 7 100856398 100856398 C T PLOD3 Missense_Mutation p.G256D 0.19 deleterious(0) probably_damaging(0.984) TCGA-B0-5092-01 7 103293158 103293158 C G RELN Missense_Mutation p.A535P 0.14 deleterious(0.05) probably_damaging(0.997) TCGA-B0-5092-01 7 22165225 22165225 A T RAPGEF5 Missense_Mutation p.F692I 0.18 deleterious(0.04) benign(0.001) TCGA-B0-5092-01 7 32909091 32909091 G A KBTBD2 Nonsense_Mutation p.R580* 0.05 TCGA-B0-5092-01 7 36396886 36396886 C A KIAA0895 Missense_Mutation p.W164C 0.17 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-B0-5092-01 7 44189428 44189429 - CAC GCK In_Frame_Ins p.V204dup 0.10 TCGA-B0-5092-01 8 10468848 10468848 C T RP1L1 Silent p.R920R 0.26 TCGA-B0-5092-01 8 124266979 124266979 C A ZHX1 Missense_Mutation p.G403V 0.05 deleterious(0.02) benign(0.254) TCGA-B0-5092-01 8 16850608 16850608 C T FGF20 Silent p.L203L 0.03 TCGA-B0-5092-01 8 38125965 38125965 G C PPAPDC1B Silent p.L66L 0.18 TCGA-B0-5092-01 8 59059205 59059205 A G FAM110B Missense_Mutation p.H139R 0.22 tolerated(0.37) benign(0.01) TCGA-B0-5092-01 9 116346645 116346645 G C RGS3 Missense_Mutation p.E985Q 0.17 tolerated(0.18) probably_damaging(0.961) TCGA-B0-5092-01 9 133485350 133485350 A T FUBP3 Missense_Mutation p.Q67L 0.17 deleterious(0.04) benign(0.165) TCGA-B0-5092-01 9 72338284 72338284 A T PTAR1 Missense_Mutation p.L302H 0.18 deleterious(0) probably_damaging(1) TCGA-B0-5092-01 X 54321069 54321069 T C WNK3 Missense_Mutation p.E537G 0.22 deleterious(0.03) possibly_damaging(0.621) TCGA-B0-5092-01 X 71350607 71350607 C T RGAG4 Missense_Mutation p.A262T 0.04 tolerated(0.06) probably_damaging(0.998) TCGA-B0-5094-01 10 28250531 28250532 - A ARMC4 Frame_Shift_Ins p.Y451Lfs*54 0.25 TCGA-B0-5094-01 10 5953065 5953070 GGAGAA - FBXO18 In_Frame_Del p.E447_K448del 0.27 TCGA-B0-5094-01 10 6553149 6553149 C - PRKCQ Frame_Shift_Del p.Q43Rfs*32 0.23 TCGA-B0-5094-01 10 96967148 96967148 G A C10orf129 Nonsense_Mutation p.W196* 0.25 TCGA-B0-5094-01 11 119168096 119168096 C T CBL Missense_Mutation p.A719V 0.32 tolerated_low_confidence(0.78) benign(0) TCGA-B0-5094-01 11 121016494 121016494 G T TECTA Silent p.L1258L 0.04 TCGA-B0-5094-01 11 199997 199997 T C ODF3 Silent p.S243S 0.22 TCGA-B0-5094-01 11 4389154 4389154 G C OR52B4 Missense_Mutation p.H124Q 0.18 deleterious(0) benign(0.017) TCGA-B0-5094-01 11 47283271 47283271 G C NR1H3 Silent p.A294A 0.10 TCGA-B0-5094-01 11 47611595 47611595 G C C1QTNF4 Silent p.A256A 0.24 TCGA-B0-5094-01 11 61295625 61295625 G A SYT7 Silent p.H203H 0.32 TCGA-B0-5094-01 11 61727371 61727371 T C BEST1 Missense_Mutation p.L259P 0.39 deleterious(0) probably_damaging(0.996) TCGA-B0-5094-01 11 78380861 78380861 C G TENM4 Missense_Mutation p.V2177L 0.41 tolerated(0.07) benign(0.039) TCGA-B0-5094-01 12 121932322 121932322 C T KDM2B Intron 0.54 TCGA-B0-5094-01 12 133331594 133331594 C G ANKLE2 Missense_Mutation p.E103Q 0.22 deleterious(0.03) probably_damaging(1) TCGA-B0-5094-01 12 442697 442697 C T KDM5A Missense_Mutation p.V537I 0.54 deleterious(0.02) possibly_damaging(0.517) TCGA-B0-5094-01 12 58217389 58217389 G T CTDSP2 Missense_Mutation p.P271H 0.46 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-B0-5094-01 12 6463640 6463640 C T SCNN1A Missense_Mutation p.V501M 0.15 tolerated(0.08) benign(0.092) TCGA-B0-5094-01 12 81239638 81239638 A T LIN7A Silent p.L118L 0.26 TCGA-B0-5094-01 12 8902521 8902521 C T RIMKLB Missense_Mutation p.T80I 0.14 deleterious(0.01) possibly_damaging(0.809) TCGA-B0-5094-01 14 36104763 36104763 C G RALGAPA1 Missense_Mutation p.M1400I 0.50 tolerated(0.08) probably_damaging(0.974) TCGA-B0-5094-01 14 64568741 64568741 C T SYNE2 Missense_Mutation p.S4158F 0.48 probably_damaging(0.917) TCGA-B0-5094-01 15 21051220 21051220 T C POTEB2 Missense_Mutation p.K414E 0.09 deleterious(0.05) benign(0.018) TCGA-B0-5094-01 15 41194909 41194909 G T VPS18 Silent p.V764V 0.25 TCGA-B0-5094-01 16 11444604 11444604 T C RMI2 Missense_Mutation p.M134T 0.33 tolerated(0.09) possibly_damaging(0.632) TCGA-B0-5094-01 16 1557648 1557648 A C TELO2 Missense_Mutation p.S780R 0.23 deleterious(0) probably_damaging(0.997) TCGA-B0-5094-01 16 21172478 21172478 C G TMEM159 5'UTR 0.18 TCGA-B0-5094-01 16 28847661 28847661 A T ATXN2L Nonsense_Mutation p.R1052* 0.28 TCGA-B0-5094-01 16 32077407 32077407 G A IGHV3OR16-9 Missense_Mutation p.G8R 0.10 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-B0-5094-01 16 56309956 56309956 G A GNAO1 Missense_Mutation p.G92D 0.27 tolerated(0.39) benign(0.003) TCGA-B0-5094-01 17 80320495 80320495 C A TEX19 Missense_Mutation p.H157N 0.06 deleterious(0) probably_damaging(0.993) TCGA-B0-5094-01 18 21084363 21084363 C T C18orf8 Missense_Mutation p.T44I 0.34 deleterious(0.01) possibly_damaging(0.766) TCGA-B0-5094-01 19 1048966 1048966 A T ABCA7 Missense_Mutation p.K781M 0.18 tolerated(0.06) possibly_damaging(0.647) TCGA-B0-5094-01 19 18499472 18499472 G T GDF15 Silent p.A218A 0.13 TCGA-B0-5094-01 19 3192504 3192504 C T NCLN Missense_Mutation p.T74M 0.26 deleterious(0) probably_damaging(0.968) TCGA-B0-5094-01 19 40900919 40900919 C A PRX Missense_Mutation p.G1114W 0.23 deleterious(0) probably_damaging(0.984) TCGA-B0-5094-01 19 41931921 41931921 C T B3GNT8 Missense_Mutation p.A255T 0.41 deleterious(0.05) probably_damaging(0.999) TCGA-B0-5094-01 19 7152929 7152929 A G INSR Missense_Mutation p.L680P 0.37 deleterious(0.01) benign(0.401) TCGA-B0-5094-01 1 11594491 11594491 G T PTCHD2 Missense_Mutation p.W1143C 0.27 deleterious(0) probably_damaging(0.999) TCGA-B0-5094-01 1 120464896 120464896 G A NOTCH2 Missense_Mutation p.R1726C 0.07 deleterious(0) probably_damaging(0.998) TCGA-B0-5094-01 1 160182915 160182922 TTGAGCAC G PEA15 Frame_Shift_Del p.I63Rfs*23 0.20 TCGA-B0-5094-01 1 160990929 160990929 A G F11R 5'UTR 0.21 TCGA-B0-5094-01 1 161200669 161200669 A T NR1I3 Missense_Mutation p.L293Q 0.39 deleterious(0) benign(0.248) TCGA-B0-5094-01 1 169391258 169391258 A G CCDC181 Silent p.L137L 0.19 TCGA-B0-5094-01 1 182551344 182551344 A G RNASEL Missense_Mutation p.F539S 0.32 deleterious(0) probably_damaging(0.921) TCGA-B0-5094-01 1 183194784 183194784 G C LAMC2 Missense_Mutation p.S332T 0.32 tolerated(0.32) probably_damaging(0.983) TCGA-B0-5094-01 1 19482023 19482023 T C UBR4 Missense_Mutation p.Y2071C 0.32 probably_damaging(0.99) TCGA-B0-5094-01 1 210412917 210412917 G A SERTAD4 Silent p.E85E 0.39 TCGA-B0-5094-01 1 216595423 216595423 G T USH2A Missense_Mutation p.Q86K 0.09 probably_damaging(0.999) TCGA-B0-5094-01 1 22140950 22140950 C G LDLRAD2 Missense_Mutation p.H49D 0.11 deleterious(0) possibly_damaging(0.738) TCGA-B0-5094-01 1 228346349 228346349 C T GJC2 Missense_Mutation p.A297V 0.16 tolerated(0.3) benign(0.236) TCGA-B0-5094-01 1 42045713 42045713 C T HIVEP3 Missense_Mutation p.G1586S 0.33 probably_damaging(0.999) TCGA-B0-5094-01 1 85491737 85491737 T C MCOLN3 Missense_Mutation p.K327R 0.22 tolerated(1) benign(0.005) TCGA-B0-5094-01 1 86591494 86591494 G C COL24A1 Silent p.V175V 0.05 TCGA-B0-5094-01 1 98186381 98186381 C G DPYD Intron 0.42 TCGA-B0-5094-01 20 14306094 14306094 T C FLRT3 3'UTR 0.37 TCGA-B0-5094-01 20 35944852 35944852 G A MANBAL 3'UTR 0.47 TCGA-B0-5094-01 20 39317054 39317054 G A MAFB Missense_Mutation p.P146L 0.50 deleterious(0.04) benign(0.115) TCGA-B0-5094-01 20 47886935 47886935 T C ZNFX1 Missense_Mutation p.R472G 0.18 deleterious(0) probably_damaging(0.995) TCGA-B0-5094-01 21 16338778 16338779 GA T NRIP1 Frame_Shift_Del p.S579Tfs*13 0.16 TCGA-B0-5094-01 21 40572142 40572142 T G BRWD1 Intron 0.28 TCGA-B0-5094-01 22 50987493 50987493 C A KLHDC7B Missense_Mutation p.P300T 0.44 tolerated(0.98) benign(0.002) TCGA-B0-5094-01 2 135926185 135926185 C A RAB3GAP1 Missense_Mutation p.S934Y 0.34 deleterious(0.01) benign(0.077) TCGA-B0-5094-01 2 138373746 138373746 C - THSD7B Frame_Shift_Del p.S1145Yfs*15 0.12 TCGA-B0-5094-01 2 170361179 170361179 T C BBS5 3'UTR 0.29 TCGA-B0-5094-01 2 176948341 176948341 G A EVX2 Missense_Mutation p.S55F 0.35 deleterious(0) possibly_damaging(0.825) TCGA-B0-5094-01 2 179441300 179441300 G A TTN Missense_Mutation p.P23224L 0.08 TCGA-B0-5094-01 2 209007477 209007477 G C CRYGB Missense_Mutation p.P138R 0.33 deleterious(0) probably_damaging(0.981) TCGA-B0-5094-01 2 242063382 242063382 G C PASK Silent p.T962T 0.29 TCGA-B0-5094-01 2 61002238 61002245 CTGTCAAA - PAPOLG Frame_Shift_Del p.A225Vfs*43 0.21 TCGA-B0-5094-01 2 74763177 74763177 A C LOXL3 Missense_Mutation p.H398Q 0.25 deleterious(0) possibly_damaging(0.778) TCGA-B0-5094-01 2 9588441 9588441 G A CPSF3 Missense_Mutation p.A453T 0.27 tolerated(1) benign(0.004) TCGA-B0-5094-01 3 10188210 10188210 T C VHL Missense_Mutation p.L118P 0.46 deleterious(0) probably_damaging(0.988) TCGA-B0-5094-01 3 166958709 166958709 T A ZBBX Splice_Site p.X798_splice 0.28 TCGA-B0-5094-01 3 46721931 46721931 C A ALS2CL Missense_Mutation p.D513Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-B0-5094-01 3 52588877 52588877 G - PBRM1 Frame_Shift_Del p.P1384Rfs*48 0.45 TCGA-B0-5094-01 4 38830418 38830418 G T TLR6 Missense_Mutation p.T226N 0.28 deleterious(0.01) benign(0.067) TCGA-B0-5094-01 4 39328257 39328258 AA - RFC1 Frame_Shift_Del p.S190Tfs*5 0.27 TCGA-B0-5094-01 4 71634345 71634345 T G RUFY3 Missense_Mutation p.N221K 0.31 deleterious(0.01) possibly_damaging(0.598) TCGA-B0-5094-01 4 8394072 8394072 C T ACOX3 Missense_Mutation p.G430S 0.35 deleterious(0) probably_damaging(0.998) TCGA-B0-5094-01 5 78359437 78359437 G T DMGDH Missense_Mutation p.A92E 0.26 deleterious(0) probably_damaging(0.996) TCGA-B0-5094-01 5 86674302 86674302 C T RASA1 Missense_Mutation p.H812Y 0.12 tolerated(0.95) benign(0.004) TCGA-B0-5094-01 6 166579294 166579294 C T T Missense_Mutation p.R169Q 0.06 tolerated(0.33) probably_damaging(0.948) TCGA-B0-5094-01 6 169634969 169634969 G A THBS2 Missense_Mutation p.S504L 0.12 deleterious(0.02) benign(0.36) TCGA-B0-5094-01 6 26285406 26285406 A G HIST1H4H 3'UTR 0.23 TCGA-B0-5094-01 6 56484745 56484745 C A DST Intron 0.24 TCGA-B0-5094-01 6 83838711 83838711 C G DOPEY1 Missense_Mutation p.Q609E 0.36 tolerated(0.76) benign(0.269) TCGA-B0-5094-01 7 101256829 101256829 G A MYL10 Missense_Mutation p.P203S 0.26 tolerated(0.06) probably_damaging(0.973) TCGA-B0-5094-01 7 136700642 136700642 G A CHRM2 Missense_Mutation p.V344M 0.18 tolerated(0.23) benign(0.327) TCGA-B0-5094-01 7 24758693 24758693 G A DFNA5 Silent p.I183I 0.19 TCGA-B0-5094-01 7 90355879 90355879 A T CDK14 Splice_Site p.X24_splice 0.17 TCGA-B0-5094-01 7 95776002 95776002 C T SLC25A13 Missense_Mutation p.G441S 0.26 deleterious(0.02) possibly_damaging(0.741) TCGA-B0-5094-01 8 100515083 100515083 A T VPS13B Missense_Mutation p.E1354D 0.26 deleterious(0.02) probably_damaging(0.914) TCGA-B0-5094-01 8 110502193 110502193 T G PKHD1L1 Missense_Mutation p.I3298R 0.14 deleterious(0) benign(0.123) TCGA-B0-5094-01 8 56436707 56436707 G A XKR4 Missense_Mutation p.C625Y 0.30 deleterious(0.02) possibly_damaging(0.556) TCGA-B0-5094-01 8 85774642 85774642 G A RALYL Missense_Mutation p.M188I 0.15 tolerated(0.48) benign(0.001) TCGA-B0-5094-01 9 140129157 140129157 G A SLC34A3 Missense_Mutation p.A437T 0.52 tolerated(0.08) possibly_damaging(0.884) TCGA-B0-5094-01 X 129265667 129265667 G T AIFM1 Missense_Mutation p.S519Y 0.28 deleterious(0) possibly_damaging(0.835) TCGA-B0-5094-01 X 150840969 150840969 G C PASD1 Missense_Mutation p.Q584H 0.06 deleterious(0.01) possibly_damaging(0.542) TCGA-B0-5094-01 X 53227796 53227796 C A KDM5C Nonsense_Mutation p.E798* 0.84 TCGA-B0-5095-01 10 126662867 126662867 T A ZRANB1 Missense_Mutation p.C443S 0.19 deleterious(0.01) probably_damaging(0.915) TCGA-B0-5095-01 10 13699459 13699459 G A FRMD4A Silent p.S710S 0.22 TCGA-B0-5095-01 10 31134379 31134379 T C ZNF438 Silent p.L666L 0.19 TCGA-B0-5095-01 10 98312748 98312748 A T TM9SF3 Silent p.I243I 0.15 TCGA-B0-5095-01 11 118348895 118348896 - T KMT2A Frame_Shift_Ins p.I1184Yfs*28 0.25 TCGA-B0-5095-01 11 22646676 22646676 G C FANCF Missense_Mutation p.H227Q 0.20 tolerated(0.07) benign(0.206) TCGA-B0-5095-01 11 63721453 63721454 - AA NAA40 Frame_Shift_Ins p.K170Rfs*5 0.13 TCGA-B0-5095-01 11 72300797 72300797 G A PDE2A Missense_Mutation p.P291S 0.25 tolerated(0.12) benign(0.023) TCGA-B0-5095-01 11 75160647 75160647 C T GDPD5 Silent p.A161A 0.27 TCGA-B0-5095-01 12 100496634 100496634 G C UHRF1BP1L Missense_Mutation p.S83C 0.24 tolerated(0.26) benign(0.217) TCGA-B0-5095-01 12 117013990 117013990 G - MAP1LC3B2 Frame_Shift_Del p.L82Wfs*2 0.22 TCGA-B0-5095-01 12 21172281 21172281 T C SLCO1B7 Missense_Mutation p.I62T 0.08 deleterious(0) possibly_damaging(0.66) TCGA-B0-5095-01 12 26540497 26540497 G T ITPR2 Missense_Mutation p.T2576K 0.14 deleterious(0) probably_damaging(0.981) TCGA-B0-5095-01 12 5021702 5021702 G T KCNA1 Missense_Mutation p.K386N 0.25 deleterious(0) probably_damaging(0.999) TCGA-B0-5095-01 12 50344571 50344571 C T AQP2 5'UTR 0.24 TCGA-B0-5095-01 12 52788815 52788815 G A KRT82 Missense_Mutation p.R496W 0.24 tolerated(0.07) benign(0.002) TCGA-B0-5095-01 12 54962995 54962995 G A PDE1B Silent p.L85L 0.18 TCGA-B0-5095-01 12 56548877 56548877 G C MYL6B Missense_Mutation p.D81H 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-B0-5095-01 12 70953090 70953090 T G PTPRB Intron 0.18 TCGA-B0-5095-01 13 25285760 25285760 A T ATP12A 3'UTR 0.23 TCGA-B0-5095-01 14 101351082 101351082 T C RTL1 Missense_Mutation p.H15R 0.17 tolerated_low_confidence(1) benign(0) TCGA-B0-5095-01 14 93043822 93043824 AGT - RIN3 Splice_Site p.X123_splice 0.20 TCGA-B0-5095-01 15 45654249 45654249 C A GATM 3'UTR 0.17 TCGA-B0-5095-01 15 68434675 68434675 G A PIAS1 Missense_Mutation p.R201K 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-B0-5095-01 15 70960389 70960389 T G UACA Missense_Mutation p.K878N 0.09 deleterious(0.05) probably_damaging(0.998) TCGA-B0-5095-01 16 61851427 61851427 C A CDH8 Silent p.G411G 0.08 TCGA-B0-5095-01 16 67920202 67920202 G T NRN1L 3'UTR 0.27 TCGA-B0-5095-01 16 81074919 81074920 - T ATMIN Intron 0.17 TCGA-B0-5095-01 17 19606416 19606416 A - SLC47A2 Frame_Shift_Del p.F397Lfs*11 0.24 TCGA-B0-5095-01 17 33501331 33501331 G C UNC45B Missense_Mutation p.C636S 0.22 tolerated(0.12) benign(0.269) TCGA-B0-5095-01 17 73934245 73934245 G A FBF1 5'UTR 0.15 TCGA-B0-5095-01 17 74307778 74307778 C T PRPSAP1 Missense_Mutation p.V335M 0.19 deleterious(0.02) possibly_damaging(0.66) TCGA-B0-5095-01 18 23872291 23872291 G A TAF4B Missense_Mutation p.G558R 0.16 deleterious(0.03) possibly_damaging(0.634) TCGA-B0-5095-01 18 2616501 2616501 C T NDC80 Silent p.L619L 0.11 TCGA-B0-5095-01 18 33785102 33785102 T A MOCOS Missense_Mutation p.S361T 0.19 tolerated(0.54) benign(0.032) TCGA-B0-5095-01 18 55319399 55319399 G A ATP8B1 Silent p.G1089G 0.25 TCGA-B0-5095-01 19 10262203 10262203 C T DNMT1 Missense_Mutation p.M712I 0.16 tolerated(0.4) benign(0.002) TCGA-B0-5095-01 19 12256409 12256409 C T ZNF625 Silent p.P274P 0.21 TCGA-B0-5095-01 19 15132495 15132495 A G CCDC105 Missense_Mutation p.E370G 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-B0-5095-01 19 40827909 40827909 G T C19orf47 Silent p.V383V 0.08 TCGA-B0-5095-01 19 40876075 40876075 G - PLD3 Frame_Shift_Del p.K203Nfs*22 0.19 TCGA-B0-5095-01 19 58118103 58118103 G C ZNF530 Missense_Mutation p.E404Q 0.16 tolerated(0.07) probably_damaging(0.928) TCGA-B0-5095-01 19 9067149 9067149 G A MUC16 Missense_Mutation p.S6766L 0.17 unknown(0) TCGA-B0-5095-01 1 160719769 160719769 A G SLAMF7 Missense_Mutation p.I179V 0.12 tolerated(0.29) benign(0.163) TCGA-B0-5095-01 1 169773348 169773348 G C C1orf112 Missense_Mutation p.D149H 0.12 deleterious(0.03) possibly_damaging(0.784) TCGA-B0-5095-01 1 171510332 171510332 G A PRRC2C Missense_Mutation p.E1241K 0.16 unknown(0) TCGA-B0-5095-01 1 201789098 201789098 G A NAV1 3'UTR 0.21 TCGA-B0-5095-01 1 247752478 247752478 C A OR2G2 Missense_Mutation p.Q273K 0.14 tolerated(0.08) possibly_damaging(0.803) TCGA-B0-5095-01 1 248059809 248059809 G A OR2W3 Silent p.G307G 0.15 TCGA-B0-5095-01 1 33747326 33747326 G A ZNF362 Silent p.L274L 0.04 TCGA-B0-5095-01 1 43773140 43773140 G C TIE1 Missense_Mutation p.E270D 0.22 deleterious(0.01) benign(0.257) TCGA-B0-5095-01 20 45905189 45905189 G A ZMYND8 Missense_Mutation p.P450L 0.05 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-B0-5095-01 20 46277767 46277767 C G NCOA3 Missense_Mutation p.Q1189E 0.22 deleterious(0) probably_damaging(0.989) TCGA-B0-5095-01 20 55049773 55049773 C A RTFDC1 Missense_Mutation p.D68E 0.19 deleterious(0.03) possibly_damaging(0.866) TCGA-B0-5095-01 20 58439344 58439344 G T SYCP2 3'UTR 0.17 TCGA-B0-5095-01 20 62366756 62366756 G C ZGPAT Missense_Mutation p.G433R 0.23 tolerated(0.15) benign(0.011) TCGA-B0-5095-01 21 17197352 17197352 C G USP25 Missense_Mutation p.L426V 0.19 tolerated(0.15) possibly_damaging(0.694) TCGA-B0-5095-01 21 34107373 34107376 TTTT - PAXBP1 Frame_Shift_Del p.E880Afs*2 0.21 TCGA-B0-5095-01 22 22677327 22677327 A G IGLV1-51 Missense_Mutation p.T119A 0.26 deleterious(0) probably_damaging(0.926) TCGA-B0-5095-01 22 24313566 24313566 G A DDTL Missense_Mutation p.E126K 0.16 tolerated_low_confidence(0.53) benign(0) TCGA-B0-5095-01 22 46655753 46655753 G A PKDREJ Missense_Mutation p.T1156I 0.17 tolerated(0.45) benign(0.036) TCGA-B0-5095-01 22 50555733 50555733 A C MOV10L1 Missense_Mutation p.Q469H 0.15 tolerated(0.12) possibly_damaging(0.497) TCGA-B0-5095-01 2 10933238 10933239 TA - PDIA6 Frame_Shift_Del p.Y146Qfs*9 0.21 TCGA-B0-5095-01 2 152346999 152346999 C T NEB Missense_Mutation p.R8395Q 0.13 possibly_damaging(0.703) TCGA-B0-5095-01 2 27454852 27454853 - GGA CAD In_Frame_Ins p.E803dup 0.28 TCGA-B0-5095-01 2 43800089 43800089 C A THADA Missense_Mutation p.R591M 0.21 deleterious(0) probably_damaging(0.95) TCGA-B0-5095-01 2 90192968 90192968 T C IGKV1D-13 Silent p.A7A 0.15 TCGA-B0-5095-01 3 10191470 10191470 G C VHL Splice_Site p.X155_splice 0.35 TCGA-B0-5095-01 3 121591511 121591511 C A EAF2 Silent p.S204S 0.18 TCGA-B0-5095-01 3 131217020 131217020 T C MRPL3 Intron 0.22 TCGA-B0-5095-01 3 147106623 147106623 C T ZIC4 3'UTR 0.18 TCGA-B0-5095-01 3 28361101 28361101 A G CMC1 Missense_Mutation p.K101R 0.19 tolerated(0.23) benign(0.085) TCGA-B0-5095-01 3 52437782 52437782 G C BAP1 Nonsense_Mutation p.S460* 0.19 TCGA-B0-5095-01 4 148545244 148545244 G A TMEM184C Missense_Mutation p.D96N 0.12 tolerated(0.59) possibly_damaging(0.456) TCGA-B0-5095-01 4 184367368 184367368 G C CDKN2AIP Silent p.T177T 0.20 TCGA-B0-5095-01 4 2698148 2698148 G A FAM193A Missense_Mutation p.R821Q 0.04 deleterious(0.03) benign(0.012) TCGA-B0-5095-01 4 73979600 73979600 C G ANKRD17 Missense_Mutation p.C1437S 0.18 benign(0.081) TCGA-B0-5095-01 5 132197841 132197841 C T GDF9 Missense_Mutation p.D269N 0.15 deleterious(0) probably_damaging(1) TCGA-B0-5095-01 5 137593484 137593484 G A GFRA3 Missense_Mutation p.P210L 0.29 deleterious(0.05) possibly_damaging(0.506) TCGA-B0-5095-01 5 142779613 142779613 A C NR3C1 Silent p.V264V 0.14 TCGA-B0-5095-01 5 161302567 161302567 C T GABRA1 Silent p.L160L 0.10 TCGA-B0-5095-01 5 167687305 167687305 G A TENM2 Missense_Mutation p.V2484M 0.15 tolerated(0.05) probably_damaging(0.997) TCGA-B0-5095-01 5 172755100 172755100 C A STC2 Missense_Mutation p.G33C 0.22 deleterious(0.02) possibly_damaging(0.834) TCGA-B0-5095-01 5 176731056 176731056 C A PRELID1 Missense_Mutation p.Q24K 0.20 tolerated(0.11) possibly_damaging(0.844) TCGA-B0-5095-01 5 179301968 179301968 A T TBC1D9B Missense_Mutation p.L707Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-B0-5095-01 5 54635986 54635986 G A SKIV2L2 Missense_Mutation p.A222T 0.05 deleterious(0.02) probably_damaging(0.996) TCGA-B0-5095-01 6 111983021 111983021 G T FYN Missense_Mutation p.T512N 0.18 deleterious(0) probably_damaging(0.998) TCGA-B0-5095-01 6 130465867 130465867 T A SAMD3 Missense_Mutation p.E454V 0.19 tolerated(0.49) probably_damaging(0.965) TCGA-B0-5095-01 6 44198152 44198152 C T SLC29A1 Missense_Mutation p.P175S 0.23 tolerated(0.07) possibly_damaging(0.562) TCGA-B0-5095-01 6 46656688 46656688 G T TDRD6 Nonsense_Mutation p.E275* 0.14 TCGA-B0-5095-01 7 117171014 117171014 A C CFTR Missense_Mutation p.D112A 0.04 tolerated(0.33) benign(0.26) TCGA-B0-5095-01 7 133689775 133689775 A C EXOC4 Missense_Mutation p.D820A 0.21 tolerated(0.4) probably_damaging(0.999) TCGA-B0-5095-01 7 65439619 65439619 C T GUSB Missense_Mutation p.A380T 0.21 deleterious(0.01) benign(0.277) TCGA-B0-5095-01 8 22037969 22037969 G A BMP1 Nonsense_Mutation p.W350* 0.17 TCGA-B0-5095-01 8 67039517 67039527 TGAATTACAAA - TRIM55 Frame_Shift_Del p.N6Ffs*10 0.18 TCGA-B0-5095-01 8 95680227 95680227 G C ESRP1 Missense_Mutation p.V328L 0.11 tolerated(0.13) benign(0.053) TCGA-B0-5095-01 9 132401522 132401522 A G ASB6 Missense_Mutation p.L157P 0.17 deleterious(0.01) probably_damaging(0.966) TCGA-B0-5095-01 9 133944413 133944413 G A LAMC3 Missense_Mutation p.G956S 0.05 deleterious(0.03) possibly_damaging(0.7) TCGA-B0-5095-01 9 88261239 88261239 A - AGTPBP1 Frame_Shift_Del p.F354Lfs*13 0.15 TCGA-B0-5095-01 X 1713017 1713017 A G AKAP17A Missense_Mutation p.Y221C 0.15 deleterious(0) probably_damaging(0.979) TCGA-B0-5095-01 X 69622533 69622533 T C KIF4A Silent p.Y869Y 0.50 TCGA-B0-5096-01 10 8051125 8051125 G T TAF3 Silent p.A800A 0.29 TCGA-B0-5096-01 10 89120914 89120914 C G NUTM2D Silent p.T281T 0.20 TCGA-B0-5096-01 11 1016334 1016334 G C MUC6 Missense_Mutation p.S2156W 0.17 possibly_damaging(0.64) TCGA-B0-5096-01 11 30557623 30557623 A T MPPED2 Silent p.P76P 0.25 TCGA-B0-5096-01 11 61188976 61188976 A C CPSF7 Silent p.P96P 0.24 TCGA-B0-5096-01 11 89907078 89907078 G T NAALAD2 Missense_Mutation p.L499F 0.14 tolerated(0.62) benign(0.001) TCGA-B0-5096-01 12 57113130 57113130 A T NACA Intron 0.09 TCGA-B0-5096-01 12 76786494 76786494 A G OSBPL8 Missense_Mutation p.C266R 0.17 deleterious(0) possibly_damaging(0.545) TCGA-B0-5096-01 12 88482866 88482866 T - CEP290 Frame_Shift_Del p.K1324Nfs*2 0.18 TCGA-B0-5096-01 14 96730316 96730316 C G BDKRB1 Missense_Mutation p.N99K 0.13 deleterious(0.05) benign(0.094) TCGA-B0-5096-01 15 30919056 30919056 G T ARHGAP11B Silent p.L11L 0.24 TCGA-B0-5096-01 15 42363506 42363506 G A PLA2G4D Missense_Mutation p.P564L 0.12 deleterious(0.02) benign(0.007) TCGA-B0-5096-01 15 43748161 43748161 G C TP53BP1 Nonsense_Mutation p.S882* 0.08 TCGA-B0-5096-01 15 57565320 57565320 G A TCF12 Missense_Mutation p.R613H 0.19 deleterious(0) probably_damaging(0.999) TCGA-B0-5096-01 15 57836715 57836715 C G CGNL1 Nonsense_Mutation p.Y1140* 0.14 TCGA-B0-5096-01 15 63970224 63970224 C A HERC1 Missense_Mutation p.R2297M 0.20 benign(0.184) TCGA-B0-5096-01 16 1748907 1748907 G A HN1L Missense_Mutation p.D161N 0.20 deleterious(0.02) benign(0.337) TCGA-B0-5096-01 16 2506613 2506613 G A CCNF Silent p.Q651Q 0.18 TCGA-B0-5096-01 16 3614126 3614126 G A NLRC3 Missense_Mutation p.A318V 0.12 tolerated(0.3) benign(0.424) TCGA-B0-5096-01 16 3614127 3614127 C T NLRC3 Missense_Mutation p.A318T 0.12 deleterious(0.04) benign(0.424) TCGA-B0-5096-01 16 56535341 56535341 G A BBS2 Silent p.L383L 0.16 TCGA-B0-5096-01 16 58757714 58757714 T C GOT2 Missense_Mutation p.N61S 0.19 deleterious(0.04) possibly_damaging(0.8) TCGA-B0-5096-01 17 45219300 45219300 A T CDC27 Missense_Mutation p.H496Q 0.14 tolerated(0.62) benign(0) TCGA-B0-5096-01 17 48050513 48050513 G C DLX4 Silent p.P120P 0.21 TCGA-B0-5096-01 17 80706807 80706808 - G FN3K Frame_Shift_Ins p.D183Gfs*4 0.26 TCGA-B0-5096-01 18 34855139 34855139 G A CELF4 Silent p.F172F 0.22 TCGA-B0-5096-01 18 57147435 57147435 C - CCBE1 Frame_Shift_Del p.G83Dfs*111 0.14 TCGA-B0-5096-01 19 1398924 1398924 G A GAMT Silent p.I187I 0.21 TCGA-B0-5096-01 19 15533882 15533882 T A WIZ 3'UTR 0.18 TCGA-B0-5096-01 19 42820822 42820828 CTCTTCT - TMEM145 Frame_Shift_Del p.L246Pfs*9 0.13 TCGA-B0-5096-01 19 51961243 51961243 C G SIGLEC8 Missense_Mutation p.W133C 0.19 deleterious(0) possibly_damaging(0.861) TCGA-B0-5096-01 19 55295161 55295161 A G KIR2DL1 Missense_Mutation p.I315V 0.21 tolerated(0.2) benign(0.007) TCGA-B0-5096-01 19 57327461 57327461 G T PEG3 Silent p.A783A 0.21 TCGA-B0-5096-01 19 6896425 6896425 C T EMR1 Silent p.D37D 0.16 TCGA-B0-5096-01 1 110129422 110129422 C T GNAI3 Silent p.I264I 0.17 TCGA-B0-5096-01 1 110883213 110883213 C T RBM15 Missense_Mutation p.R396C 0.22 deleterious(0) probably_damaging(0.995) TCGA-B0-5096-01 1 12423192 12423192 C G VPS13D Missense_Mutation p.P3446R 0.20 probably_damaging(0.998) TCGA-B0-5096-01 1 167095901 167095901 A C DUSP27 Silent p.A511A 0.17 TCGA-B0-5096-01 1 24408528 24408528 G A MYOM3 Missense_Mutation p.A748V 0.06 deleterious(0.01) benign(0.217) TCGA-B0-5096-01 1 247322364 247322364 G A ZNF124 Silent p.N54N 0.12 TCGA-B0-5096-01 1 41218906 41218906 T G NFYC Silent p.P125P 0.15 TCGA-B0-5096-01 1 93987691 93987691 C T FNBP1L Missense_Mutation p.R65W 0.18 deleterious(0) probably_damaging(0.962) TCGA-B0-5096-01 20 1961113 1961113 A T PDYN Nonsense_Mutation p.Y207* 0.19 TCGA-B0-5096-01 20 33529582 33529582 G T GSS Missense_Mutation p.S181Y 0.19 deleterious(0.03) benign(0.016) TCGA-B0-5096-01 20 44190839 44190839 G A WFDC8 Missense_Mutation p.P16S 0.04 tolerated(1) benign(0) TCGA-B0-5096-01 21 44448816 44448816 A T PKNOX1 Missense_Mutation p.I311F 0.21 deleterious(0) probably_damaging(0.998) TCGA-B0-5096-01 22 19883099 19883099 C T TXNRD2 Missense_Mutation p.M260I 0.24 tolerated(0.17) possibly_damaging(0.629) TCGA-B0-5096-01 2 109100728 109100728 A G GCC2 Missense_Mutation p.I1192V 0.20 tolerated(0.07) benign(0.09) TCGA-B0-5096-01 2 114512805 114512805 A C SLC35F5 Silent p.A70A 0.32 TCGA-B0-5096-01 2 128186505 128186505 A C PROC Missense_Mutation p.K457Q 0.20 tolerated(0.17) benign(0.011) TCGA-B0-5096-01 2 163241431 163241431 G C KCNH7 Missense_Mutation p.P910R 0.16 tolerated(0.17) benign(0.005) TCGA-B0-5096-01 2 172411334 172411334 G A CYBRD1 Missense_Mutation p.M286I 0.12 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-B0-5096-01 2 179417031 179417031 C T TTN Missense_Mutation p.G30199E 0.25 TCGA-B0-5096-01 2 179587903 179587903 G A TTN Silent p.N7277N 0.25 TCGA-B0-5096-01 2 179665198 179665198 C G TTN Missense_Mutation p.E169D 0.17 TCGA-B0-5096-01 2 196545178 196545178 G T SLC39A10 Nonsense_Mutation p.E138* 0.25 TCGA-B0-5096-01 2 234431845 234431845 A G USP40 Silent p.I735I 0.21 TCGA-B0-5096-01 2 63282664 63282664 G C OTX1 Missense_Mutation p.C93S 0.16 deleterious(0.01) benign(0.27) TCGA-B0-5096-01 2 85097390 85097390 C T TRABD2A Missense_Mutation p.E210K 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-B0-5096-01 2 89986884 89986884 G A IGKV2D-29 Silent p.K55K 0.22 TCGA-B0-5096-01 3 10188197 10188197 G T VHL Splice_Site p.X114_splice 0.27 TCGA-B0-5096-01 3 108788593 108788593 C T MORC1 Missense_Mutation p.R234K 0.12 tolerated(0.11) benign(0.025) TCGA-B0-5096-01 3 132245126 132245126 G A DNAJC13 Splice_Site p.X2127_splice 0.22 TCGA-B0-5096-01 3 137843327 137843327 A C A4GNT Missense_Mutation p.W268G 0.22 deleterious(0) probably_damaging(1) TCGA-B0-5096-01 3 142030531 142030531 T C XRN1 Missense_Mutation p.E1648G 0.03 tolerated_low_confidence(0.19) benign(0) TCGA-B0-5096-01 3 142987800 142987800 G T SLC9A9 Missense_Mutation p.H543N 0.23 tolerated(0.19) probably_damaging(0.991) TCGA-B0-5096-01 3 193355797 193355797 C G OPA1 Silent p.A346A 0.09 TCGA-B0-5096-01 3 49456775 49456775 A G AMT Missense_Mutation p.M205T 0.06 tolerated(0.08) probably_damaging(0.999) TCGA-B0-5096-01 3 52443894 52443894 T C BAP1 Translation_Start_Site p.M1? 0.21 deleterious(0.01) benign(0.055) TCGA-B0-5096-01 3 52651339 52651339 A T PBRM1 Missense_Mutation p.M586K 0.35 deleterious(0) benign(0.353) TCGA-B0-5096-01 4 153897676 153897676 C T FHDC1 Missense_Mutation p.A1078V 0.05 tolerated(0.1) benign(0.011) TCGA-B0-5096-01 4 1920240 1920240 G C WHSC1 Missense_Mutation p.G434R 0.20 deleterious(0.02) probably_damaging(0.98) TCGA-B0-5096-01 4 74283985 74283985 A G ALB Missense_Mutation p.I537V 0.18 tolerated(0.21) benign(0) TCGA-B0-5096-01 4 7436245 7436245 A G PSAPL1 Missense_Mutation p.M121T 0.21 deleterious(0) possibly_damaging(0.461) TCGA-B0-5096-01 4 77969663 77969663 G T CCNI Silent p.P281P 0.22 TCGA-B0-5096-01 4 89016750 89016750 A G ABCG2 Silent p.G553G 0.26 TCGA-B0-5096-01 5 145557190 145557190 C T LARS Silent p.K15K 0.22 TCGA-B0-5096-01 5 175387036 175387036 C T THOC3 Missense_Mutation p.G331D 0.13 tolerated(0.07) possibly_damaging(0.554) TCGA-B0-5096-01 5 177310767 177310767 G A RP11-423H2.1 RNA 0.21 TCGA-B0-5096-01 5 54459987 54459987 A G GPX8 Missense_Mutation p.R191G 0.27 deleterious(0.01) possibly_damaging(0.482) TCGA-B0-5096-01 6 118880286 118880286 T - PLN 3'UTR 0.22 TCGA-B0-5096-01 6 149833348 149833349 AT - PPIL4 Frame_Shift_Del p.H390Pfs*4 0.17 TCGA-B0-5096-01 6 29342284 29342284 G A OR12D3 Missense_Mutation p.P261S 0.18 deleterious(0.05) possibly_damaging(0.58) TCGA-B0-5096-01 6 30884693 30884693 G A VARS2 Missense_Mutation p.G267D 0.24 deleterious(0) probably_damaging(1) TCGA-B0-5096-01 6 30884694 30884694 T C VARS2 Silent p.G267G 0.23 TCGA-B0-5096-01 6 31855386 31855386 T C EHMT2 Missense_Mutation p.Q660R 0.21 deleterious(0.04) benign(0.149) TCGA-B0-5096-01 6 32155054 32155054 C T PBX2 Missense_Mutation p.S330N 0.24 tolerated(0.22) benign(0.002) TCGA-B0-5096-01 6 32170158 32170158 C T NOTCH4 Silent p.T1150T 0.20 TCGA-B0-5096-01 6 40996183 40996186 CGTG - UNC5CL Frame_Shift_Del p.H495Afs*125 0.15 TCGA-B0-5096-01 6 41554889 41554889 C T FOXP4 Missense_Mutation p.P218L 0.25 deleterious(0.02) probably_damaging(0.941) TCGA-B0-5096-01 6 7605680 7605680 G A SNRNP48 Nonsense_Mutation p.W256* 0.20 TCGA-B0-5096-01 7 107596066 107596066 A G LAMB1 Silent p.A900A 0.40 TCGA-B0-5096-01 7 107720165 107720165 G A LAMB4 Missense_Mutation p.P590S 0.14 tolerated(0.13) benign(0.062) TCGA-B0-5096-01 7 116533094 116533094 A T CAPZA2 Silent p.A50A 0.14 TCGA-B0-5096-01 7 129666109 129666109 T A ZC3HC1 Missense_Mutation p.E222V 0.15 deleterious(0) benign(0.261) TCGA-B0-5096-01 7 129666110 129666110 C A ZC3HC1 Nonsense_Mutation p.E222* 0.15 TCGA-B0-5096-01 7 151859848 151859848 T A KMT2C Missense_Mutation p.K3605I 0.06 probably_damaging(0.921) TCGA-B0-5096-01 7 73011232 73011232 A G MLXIPL Missense_Mutation p.L545P 0.17 tolerated(0.18) benign(0.002) TCGA-B0-5096-01 7 99758362 99758365 GGCA - GAL3ST4 Frame_Shift_Del p.L216Pfs*106 0.22 TCGA-B0-5096-01 8 123963970 123963970 C G ZHX2 Missense_Mutation p.L74V 0.27 tolerated(0.84) benign(0.165) TCGA-B0-5096-01 8 20107281 20107281 C T LZTS1 Silent p.L581L 0.27 TCGA-B0-5096-01 8 25364407 25364407 G T CDCA2 Missense_Mutation p.G742V 0.09 deleterious(0.02) benign(0.046) TCGA-B0-5096-01 8 37967896 37967896 G T ASH2L Splice_Site p.X134_splice 0.17 TCGA-B0-5096-01 8 38008507 38008507 C G STAR 5'UTR 0.25 TCGA-B0-5096-01 8 39103665 39103666 - A ADAM32 Frame_Shift_Ins p.Q629Tfs*9 0.15 TCGA-B0-5096-01 8 49833919 49833919 A T SNAI2 5'UTR 0.22 TCGA-B0-5096-01 8 623372 623372 T A ERICH1 Missense_Mutation p.E327V 0.20 deleterious(0) possibly_damaging(0.474) TCGA-B0-5096-01 8 77768068 77768068 C T ZFHX4 Missense_Mutation p.R2971C 0.20 probably_damaging(0.995) TCGA-B0-5096-01 X 107431170 107431170 G A COL4A6 Missense_Mutation p.R560W 0.12 probably_damaging(0.981) TCGA-B0-5096-01 X 107935977 107935977 G T COL4A5 Splice_Site p.X1510_splice 0.22 TCGA-B0-5096-01 X 119509282 119509282 C T ATP1B4 Silent p.Y206Y 0.19 TCGA-B0-5096-01 X 149900042 149900042 A C MTMR1 Missense_Mutation p.D273A 0.20 deleterious(0) possibly_damaging(0.795) TCGA-B0-5096-01 X 45606471 45606471 C T MIR222 RNA 0.21 TCGA-B0-5096-01 X 7889834 7889834 G T PNPLA4 Missense_Mutation p.L111M 0.11 deleterious(0) probably_damaging(0.998) TCGA-B0-5096-01 X 8764374 8764374 A T FAM9A Missense_Mutation p.D141E 0.18 tolerated_low_confidence(0.11) possibly_damaging(0.866) TCGA-B0-5097-01 10 12209851 12209851 G A NUDT5 Intron 0.08 TCGA-B0-5097-01 11 108121679 108121679 G - ATM Frame_Shift_Del p.S496Ifs*16 0.18 TCGA-B0-5097-01 11 108202714 108202714 A T ATM Nonsense_Mutation p.R2580* 0.20 TCGA-B0-5097-01 11 63586459 63586459 G A C11orf84 Missense_Mutation p.E307K 0.10 tolerated_low_confidence(0.15) benign(0.006) TCGA-B0-5097-01 12 100930297 100930297 C G NR1H4 Missense_Mutation p.T257S 0.19 tolerated(0.29) benign(0.004) TCGA-B0-5097-01 13 25161456 25161456 C T RP11-556N21.1 RNA 0.10 TCGA-B0-5097-01 13 29600300 29600300 C A MTUS2 Missense_Mutation p.P499T 0.17 tolerated(0.15) benign(0.007) TCGA-B0-5097-01 13 40268842 40268842 A G COG6 Silent p.K382K 0.18 TCGA-B0-5097-01 13 80911095 80911095 C T SPRY2 Missense_Mutation p.C249Y 0.15 deleterious(0.03) benign(0.01) TCGA-B0-5097-01 14 64547342 64547342 T G SYNE2 Missense_Mutation p.S3778A 0.05 benign(0.144) TCGA-B0-5097-01 14 76045408 76045408 C A FLVCR2 Silent p.P31P 0.20 TCGA-B0-5097-01 15 52486064 52486064 C G MYO5C 3'UTR 0.06 TCGA-B0-5097-01 16 28916276 28916276 G C RABEP2 Missense_Mutation p.I566M 0.21 deleterious(0.01) benign(0.177) TCGA-B0-5097-01 16 51173795 51173795 C T SALL1 Missense_Mutation p.V780I 0.20 deleterious(0.02) possibly_damaging(0.863) TCGA-B0-5097-01 17 38798730 38798730 G A SMARCE1 Missense_Mutation p.P45S 0.14 tolerated(0.17) benign(0) TCGA-B0-5097-01 17 71357832 71357832 G T SDK2 Missense_Mutation p.P1820T 0.21 deleterious(0) probably_damaging(0.999) TCGA-B0-5097-01 17 7139521 7139521 G A PHF23 Missense_Mutation p.P242L 0.05 tolerated(0.82) probably_damaging(0.981) TCGA-B0-5097-01 19 10463680 10463680 T G TYK2 Missense_Mutation p.D1041A 0.18 deleterious(0) probably_damaging(0.962) TCGA-B0-5097-01 19 16535940 16535940 T C EPS15L1 Missense_Mutation p.N249S 0.30 tolerated(0.52) benign(0.009) TCGA-B0-5097-01 19 16630029 16630029 G A CHERP Missense_Mutation p.R898C 0.25 deleterious(0.02) unknown(0) TCGA-B0-5097-01 19 17611525 17611525 C G SLC27A1 Missense_Mutation p.D492E 0.12 deleterious(0) probably_damaging(1) TCGA-B0-5097-01 19 43228148 43228148 G T PSG3 Missense_Mutation p.L425I 0.11 tolerated(0.71) benign(0.001) TCGA-B0-5097-01 1 144865887 144865887 G C PDE4DIP Missense_Mutation p.P1898R 0.14 deleterious(0.05) possibly_damaging(0.807) TCGA-B0-5097-01 1 166962002 166962002 C T MAEL Silent p.L135L 0.21 TCGA-B0-5097-01 1 179057211 179057211 T G TOR3A Missense_Mutation p.F269V 0.17 deleterious(0) possibly_damaging(0.755) TCGA-B0-5097-01 1 241875161 241875161 G A WDR64 Silent p.K334K 0.14 TCGA-B0-5097-01 1 29481292 29481292 A G SRSF4 Missense_Mutation p.V165A 0.16 deleterious(0) possibly_damaging(0.765) TCGA-B0-5097-01 1 44064327 44064327 T C PTPRF Intron 0.28 TCGA-B0-5097-01 1 9415972 9415972 G A SPSB1 Missense_Mutation p.G8R 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.757) TCGA-B0-5097-01 1 94370100 94370100 T C GCLM Silent p.Q57Q 0.27 TCGA-B0-5097-01 20 23347703 23347703 C T GZF1 Silent p.H476H 0.22 TCGA-B0-5097-01 21 30332994 30332994 G A LTN1 Missense_Mutation p.T779I 0.08 tolerated(0.18) benign(0.005) TCGA-B0-5097-01 22 38227935 38227935 A G ANKRD54 3'UTR 0.25 TCGA-B0-5097-01 2 178098803 178098803 C T NFE2L2 Missense_Mutation p.G81D 0.18 deleterious(0) probably_damaging(1) TCGA-B0-5097-01 2 191550288 191550288 G C NAB1 Missense_Mutation p.L394F 0.27 deleterious_low_confidence(0.05) probably_damaging(0.95) TCGA-B0-5097-01 2 196642652 196642652 C T DNAH7 Missense_Mutation p.V3646M 0.24 deleterious(0) probably_damaging(1) TCGA-B0-5097-01 2 225729384 225729384 A C DOCK10 Missense_Mutation p.F496L 0.16 deleterious(0.05) probably_damaging(0.989) TCGA-B0-5097-01 2 73677725 73677725 T A ALMS1 Silent p.A1356A 0.21 TCGA-B0-5097-01 2 96789864 96789864 C A ASTL Nonsense_Mutation p.E341* 0.17 TCGA-B0-5097-01 3 10183752 10183752 T A VHL Missense_Mutation p.V74D 0.25 deleterious(0) probably_damaging(0.994) TCGA-B0-5097-01 3 10183753 10183753 C T VHL Silent p.V74V 0.25 TCGA-B0-5097-01 3 13670697 13670697 G T FBLN2 Missense_Mutation p.C916F 0.17 deleterious(0) probably_damaging(1) TCGA-B0-5097-01 3 184082991 184082991 C T POLR2H Silent p.N76N 0.22 TCGA-B0-5097-01 3 195701417 195701417 G C SDHAP1 RNA 0.09 TCGA-B0-5097-01 3 52441262 52441262 A C BAP1 Missense_Mutation p.F170V 0.22 deleterious(0) probably_damaging(0.995) TCGA-B0-5097-01 3 52597369 52597369 G - PBRM1 Intron 0.22 TCGA-B0-5097-01 3 89468448 89468448 A - EPHA3 Frame_Shift_Del p.K662Sfs*35 0.23 TCGA-B0-5097-01 4 41983927 41983927 A C DCAF4L1 Missense_Mutation p.T40P 0.21 tolerated(0.22) benign(0.013) TCGA-B0-5097-01 4 515604 515604 T A PIGG Missense_Mutation p.S496R 0.23 tolerated(0.1) benign(0.023) TCGA-B0-5097-01 4 56314944 56314944 A G CLOCK Splice_Site p.X513_splice 0.18 TCGA-B0-5097-01 4 56314945 56314945 C A CLOCK Splice_Site p.X513_splice 0.17 TCGA-B0-5097-01 4 68719845 68719845 G A TMPRSS11D Nonsense_Mutation p.Q64* 0.24 TCGA-B0-5097-01 5 137213306 137213306 C T MYOT Missense_Mutation p.S210L 0.25 tolerated(0.43) benign(0.001) TCGA-B0-5097-01 5 154396598 154396598 G T KIF4B Missense_Mutation p.G1060V 0.22 tolerated(0.32) benign(0.273) TCGA-B0-5097-01 5 176402397 176402397 G A UIMC1 Nonsense_Mutation p.Q78* 0.17 TCGA-B0-5097-01 5 66479940 66479940 T G CD180 Missense_Mutation p.N244T 0.20 deleterious(0.01) benign(0.372) TCGA-B0-5097-01 5 72185719 72185719 C G TNPO1 Missense_Mutation p.L546V 0.08 deleterious(0) probably_damaging(0.946) TCGA-B0-5097-01 5 81614047 81614047 G T ATP6AP1L Missense_Mutation p.K201N 0.12 deleterious(0.04) probably_damaging(0.992) TCGA-B0-5097-01 6 134210722 134210722 C A TCF21 Missense_Mutation p.P63T 0.14 tolerated(0.15) benign(0.001) TCGA-B0-5097-01 6 66205260 66205260 T A EYS Missense_Mutation p.H15L 0.17 tolerated_low_confidence(0.11) benign(0.015) TCGA-B0-5097-01 6 84292066 84292066 C - SNAP91 Frame_Shift_Del p.G675Vfs*11 0.32 TCGA-B0-5097-01 7 100486192 100486192 C T SRRT 3'UTR 0.16 TCGA-B0-5097-01 7 152012275 152012275 T - KMT2C Frame_Shift_Del p.T180Pfs*26 0.20 TCGA-B0-5097-01 7 21913067 21913067 C A DNAH11 Missense_Mutation p.P4055H 0.15 probably_damaging(0.997) TCGA-B0-5097-01 7 23802525 23802525 C T STK31 Missense_Mutation p.R467C 0.16 deleterious(0) probably_damaging(0.999) TCGA-B0-5097-01 7 75182782 75182782 G T HIP1 Missense_Mutation p.N755K 0.08 tolerated(0.91) benign(0.002) TCGA-B0-5097-01 7 99170286 99170286 G A ZNF655 Silent p.Q220Q 0.17 TCGA-B0-5097-01 8 143994011 143994011 A T CYP11B2 Missense_Mutation p.F445I 0.26 deleterious(0) probably_damaging(0.985) TCGA-B0-5097-01 8 68084731 68084731 A T CSPP1 Missense_Mutation p.K965M 0.18 deleterious(0) probably_damaging(0.999) TCGA-B0-5097-01 9 113241933 113241933 C T SVEP1 Silent p.E823E 0.11 TCGA-B0-5097-01 9 80043923 80043923 T G GNA14 Missense_Mutation p.E208A 0.06 deleterious(0) probably_damaging(0.98) TCGA-B0-5097-01 9 84532821 84532821 G C SPATA31D5P RNA 0.13 TCGA-B0-5097-01 X 104463697 104463697 C A TEX13A Missense_Mutation p.R393S 0.15 deleterious(0.01) possibly_damaging(0.849) TCGA-B0-5097-01 X 133674458 133674458 G A MIR450A1 RNA 0.21 TCGA-B0-5097-01 X 148035250 148035250 C A AFF2 Missense_Mutation p.P513H 0.17 deleterious(0) probably_damaging(1) TCGA-B0-5097-01 X 48403330 48403330 G C TBC1D25 Missense_Mutation p.D103H 0.08 deleterious(0) probably_damaging(0.927) TCGA-B0-5097-01 X 55039931 55039931 C A ALAS2 Nonsense_Mutation p.E530* 0.15 TCGA-B0-5098-01 10 102676519 102676519 A G FAM178A Missense_Mutation p.H126R 0.16 tolerated(0.6) benign(0.001) TCGA-B0-5098-01 10 103360984 103360984 A G DPCD Missense_Mutation p.K99E 0.31 deleterious(0.03) probably_damaging(0.917) TCGA-B0-5098-01 10 117093811 117093811 T C ATRNL1 Silent p.H1019H 0.37 TCGA-B0-5098-01 10 121571296 121571296 A C INPP5F Missense_Mutation p.E572A 0.36 tolerated(0.09) probably_damaging(0.992) TCGA-B0-5098-01 10 123844471 123844471 C T TACC2 Missense_Mutation p.S819F 0.27 probably_damaging(0.935) TCGA-B0-5098-01 10 127418872 127418872 A T EDRF1 Silent p.P344P 0.34 TCGA-B0-5098-01 10 127418877 127418877 A T EDRF1 Missense_Mutation p.N346I 0.33 deleterious(0) probably_damaging(0.976) TCGA-B0-5098-01 10 127548334 127548336 ATA - DHX32 In_Frame_Del p.Y229del 0.15 TCGA-B0-5098-01 10 134161565 134161565 A G LRRC27 Missense_Mutation p.N211D 0.32 tolerated(0.52) benign(0.003) TCGA-B0-5098-01 10 135013087 135013087 C T KNDC1 Nonsense_Mutation p.Q962* 0.29 TCGA-B0-5098-01 10 15113840 15113840 T A OLAH Missense_Mutation p.F260I 0.34 deleterious(0.02) probably_damaging(0.954) TCGA-B0-5098-01 10 17164806 17164806 A G CUBN Missense_Mutation p.M194T 0.06 tolerated(0.56) benign(0.08) TCGA-B0-5098-01 10 23003267 23003267 A G PIP4K2A 5'UTR 0.55 TCGA-B0-5098-01 10 27326979 27326979 T C ANKRD26 Missense_Mutation p.S794G 0.27 deleterious(0.01) benign(0.015) TCGA-B0-5098-01 10 32307245 32307245 T A KIF5B Missense_Mutation p.K813M 0.35 deleterious(0) possibly_damaging(0.781) TCGA-B0-5098-01 10 37442500 37442500 A G ANKRD30A Missense_Mutation p.S514G 0.10 tolerated(0.28) possibly_damaging(0.483) TCGA-B0-5098-01 10 45953840 45953840 A G MARCH8 Silent p.C241C 0.27 TCGA-B0-5098-01 10 46963839 46963839 C T SYT15 Splice_Site p.X375_splice 0.15 TCGA-B0-5098-01 10 48429372 48429372 G A GDF10 Silent p.L172L 0.19 TCGA-B0-5098-01 10 51584973 51584973 G A NCOA4 Missense_Mutation p.V374M 0.27 deleterious(0.03) possibly_damaging(0.53) TCGA-B0-5098-01 10 5415994 5415994 G T UCN3 Missense_Mutation p.R104M 0.48 deleterious(0) possibly_damaging(0.831) TCGA-B0-5098-01 10 5690974 5690974 G A ASB13 Missense_Mutation p.A159V 0.28 tolerated(0.35) benign(0.129) TCGA-B0-5098-01 10 59956101 59956101 A G IPMK Silent p.H329H 0.09 TCGA-B0-5098-01 10 61967865 61967865 C T ANK3 Missense_Mutation p.A375T 0.34 probably_damaging(0.991) TCGA-B0-5098-01 10 71868887 71868887 A G H2AFY2 Missense_Mutation p.T293A 0.10 tolerated(0.23) benign(0.006) TCGA-B0-5098-01 10 74834565 74834565 C G P4HA1 Splice_Site p.X26_splice 0.32 TCGA-B0-5098-01 10 7777015 7777015 C T ITIH2 Silent p.L640L 0.10 TCGA-B0-5098-01 10 7791150 7791150 G A ITIH2 Silent p.R898R 0.35 TCGA-B0-5098-01 10 88911131 88911131 T C FAM35A Missense_Mutation p.V7A 0.33 deleterious(0) possibly_damaging(0.884) TCGA-B0-5098-01 10 91143311 91143311 T C IFIT1B Silent p.L81L 0.36 TCGA-B0-5098-01 10 94454326 94454328 AAG - HHEX In_Frame_Del p.E207del 0.38 TCGA-B0-5098-01 10 94733826 94733826 C T EXOC6 Missense_Mutation p.A597V 0.31 tolerated(0.11) possibly_damaging(0.859) TCGA-B0-5098-01 10 96116290 96116290 A G NOC3L Splice_Site p.X189_splice 0.34 TCGA-B0-5098-01 10 96998377 96998377 T A PDLIM1 Missense_Mutation p.I251F 0.32 deleterious(0.03) benign(0.197) TCGA-B0-5098-01 11 117984053 117984053 G T TMPRSS4 Silent p.L271L 0.03 TCGA-B0-5098-01 11 118971120 118971120 T G DPAGT1 Splice_Site p.X166_splice 0.38 TCGA-B0-5098-01 11 119025497 119025497 G A ABCG4 Silent p.T186T 0.27 TCGA-B0-5098-01 11 119210050 119210050 G C C1QTNF5 Silent p.V241V 0.34 TCGA-B0-5098-01 11 122930821 122930821 T C HSPA8 Intron 0.03 TCGA-B0-5098-01 11 123900597 123900597 G A OR10G8 Missense_Mutation p.A90T 0.20 tolerated(1) benign(0.005) TCGA-B0-5098-01 11 123909233 123909233 G A OR10G7 Missense_Mutation p.T159I 0.03 deleterious(0.01) probably_damaging(0.981) TCGA-B0-5098-01 11 123909474 123909474 T A OR10G7 Missense_Mutation p.M79L 0.06 tolerated(0.28) benign(0.005) TCGA-B0-5098-01 11 130131061 130131061 A G ZBTB44 Silent p.I236I 0.36 TCGA-B0-5098-01 11 205968 205968 A G BET1L Missense_Mutation p.V32A 0.29 deleterious(0) probably_damaging(0.98) TCGA-B0-5098-01 11 20691274 20691274 C A NELL1 Missense_Mutation p.P2Q 0.28 tolerated_low_confidence(0.49) benign(0.151) TCGA-B0-5098-01 11 24518815 24518815 T C LUZP2 Missense_Mutation p.L9P 0.31 deleterious(0) possibly_damaging(0.648) TCGA-B0-5098-01 11 2609949 2609949 A - KCNQ1 Frame_Shift_Del p.K422Sfs*10 0.22 TCGA-B0-5098-01 11 32953741 32953741 C T QSER1 Nonsense_Mutation p.R184* 0.30 TCGA-B0-5098-01 11 32975569 32975569 A C QSER1 Missense_Mutation p.E1319D 0.33 tolerated(0.27) benign(0.002) TCGA-B0-5098-01 11 33564206 33564206 A G KIAA1549L Missense_Mutation p.Q69R 0.32 tolerated_low_confidence(0.91) benign(0) TCGA-B0-5098-01 11 33768587 33768587 T C FBXO3 Intron 0.45 TCGA-B0-5098-01 11 36596979 36596979 G T RAG1 Missense_Mutation p.G709C 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-B0-5098-01 11 44297022 44297022 C T ALX4 Missense_Mutation p.R218Q 0.31 deleterious(0) probably_damaging(0.988) TCGA-B0-5098-01 11 46726767 46726767 G A ZNF408 Missense_Mutation p.R506H 0.25 deleterious(0) probably_damaging(0.999) TCGA-B0-5098-01 11 47305943 47305943 C G MADD Missense_Mutation p.H662D 0.41 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-B0-5098-01 11 5291119 5291119 A G HBE1 Translation_Start_Site p.M1? 0.10 deleterious(0) probably_damaging(0.997) TCGA-B0-5098-01 11 5444095 5444095 T C OR51Q1 Missense_Mutation p.L222P 0.28 deleterious(0.01) possibly_damaging(0.908) TCGA-B0-5098-01 11 55032522 55032522 T C TRIM48 Missense_Mutation p.I64T 0.33 tolerated(0.77) benign(0.007) TCGA-B0-5098-01 11 5529517 5529517 A G UBQLN3 Silent p.G424G 0.35 TCGA-B0-5098-01 11 55418395 55418395 A G OR4S2 Missense_Mutation p.N6D 0.71 deleterious(0) possibly_damaging(0.51) TCGA-B0-5098-01 11 59814583 59814583 G A OOSP2 3'UTR 0.34 TCGA-B0-5098-01 11 62462149 62462149 A G BSCL2 Missense_Mutation p.L174S 0.31 deleterious(0) probably_damaging(0.982) TCGA-B0-5098-01 11 62484649 62484650 AA - HNRNPUL2 Frame_Shift_Del p.L598Afs*2 0.34 TCGA-B0-5098-01 11 62623778 62623778 G A SLC3A2 Missense_Mutation p.V13M 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.509) TCGA-B0-5098-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.28 TCGA-B0-5098-01 11 64024202 64024202 C A PLCB3 Nonsense_Mutation p.Y326* 0.34 TCGA-B0-5098-01 11 64108789 64108789 G A CCDC88B Missense_Mutation p.A146T 0.29 deleterious(0.01) probably_damaging(1) TCGA-B0-5098-01 11 6431909 6431909 G A APBB1 Silent p.S223S 0.26 TCGA-B0-5098-01 11 64606329 64606329 C T CDC42BPG Missense_Mutation p.A308T 0.34 deleterious(0) probably_damaging(0.996) TCGA-B0-5098-01 11 64898665 64898665 C T SYVN1 Silent p.Q254Q 0.31 TCGA-B0-5098-01 11 65272262 65272262 C A MALAT1 RNA 0.31 TCGA-B0-5098-01 11 66192164 66192164 T C NPAS4 Silent p.D601D 0.41 TCGA-B0-5098-01 11 66262690 66262690 C T DPP3 Missense_Mutation p.A468V 0.28 tolerated(0.13) benign(0.001) TCGA-B0-5098-01 11 66453855 66453855 G A SPTBN2 Intron 0.30 TCGA-B0-5098-01 11 6646021 6646021 C A DCHS1 Missense_Mutation p.G2409C 0.33 deleterious(0.02) probably_damaging(1) TCGA-B0-5098-01 11 6662142 6662142 G - DCHS1 Frame_Shift_Del p.R235Gfs*9 0.32 TCGA-B0-5098-01 11 66999421 66999421 C T KDM2A Missense_Mutation p.A490V 0.35 tolerated(0.12) benign(0.03) TCGA-B0-5098-01 11 67068486 67068486 G A ANKRD13D Missense_Mutation p.E367K 0.41 deleterious(0) probably_damaging(0.997) TCGA-B0-5098-01 11 67075160 67075160 C T SSH3 Missense_Mutation p.A248V 0.32 tolerated(0.06) benign(0.053) TCGA-B0-5098-01 11 67207642 67207642 A G CORO1B Silent p.G318G 0.35 TCGA-B0-5098-01 11 67219534 67219534 C T GPR152 Missense_Mutation p.R221H 0.39 tolerated(0.06) benign(0.037) TCGA-B0-5098-01 11 71293392 71293392 T C KRTAP5-11 3'UTR 0.25 TCGA-B0-5098-01 11 72423706 72423706 C G ARAP1 Intron 0.41 TCGA-B0-5098-01 11 73610254 73610254 A G PAAF1 Missense_Mutation p.M116V 0.29 tolerated(0.07) probably_damaging(0.977) TCGA-B0-5098-01 11 74985123 74985123 G A ARRB1 Silent p.S303S 0.07 TCGA-B0-5098-01 11 8936454 8936454 T - AKIP1 Frame_Shift_Del p.C129Afs*4 0.28 TCGA-B0-5098-01 11 8941056 8941056 T - AKIP1 3'UTR 0.34 TCGA-B0-5098-01 11 89537226 89537226 C - TRIM49 Splice_Site p.X137_splice 0.19 TCGA-B0-5098-01 11 94730807 94730807 A - KDM4D Frame_Shift_Del p.K93Rfs*4 0.34 TCGA-B0-5098-01 12 100502181 100502181 T C UHRF1BP1L Missense_Mutation p.N64D 0.36 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 12 100957204 100957204 G A NR1H4 Missense_Mutation p.M466I 0.36 tolerated(0.49) benign(0.058) TCGA-B0-5098-01 12 1036424 1036424 A G RAD52 Silent p.G118G 0.14 TCGA-B0-5098-01 12 109017315 109017315 C G SELPLG Missense_Mutation p.A273P 0.43 tolerated(0.13) probably_damaging(0.934) TCGA-B0-5098-01 12 109541373 109541373 T G UNG Missense_Mutation p.L253R 0.35 deleterious(0) probably_damaging(0.997) TCGA-B0-5098-01 12 114395588 114395588 T C RBM19 Missense_Mutation p.E280G 0.30 tolerated(0.14) benign(0.002) TCGA-B0-5098-01 12 11461294 11461294 G - PRB4 Frame_Shift_Del p.P208Qfs*49 0.17 TCGA-B0-5098-01 12 118199247 118199248 - G KSR2 Frame_Shift_Ins p.E186Gfs*200 0.40 TCGA-B0-5098-01 12 120591026 120591026 G - GCN1L1 Frame_Shift_Del p.S1352Pfs*8 0.22 TCGA-B0-5098-01 12 120599736 120599736 C G GCN1L1 Missense_Mutation p.A764P 0.26 benign(0.131) TCGA-B0-5098-01 12 120936099 120936099 C T DYNLL1 3'UTR 0.35 TCGA-B0-5098-01 12 122674785 122674785 A T LRRC43 Silent p.G257G 0.33 TCGA-B0-5098-01 12 123087702 123087702 G A KNTC1 Silent p.T1671T 0.11 TCGA-B0-5098-01 12 125467060 125467060 T G DHX37 Missense_Mutation p.K129T 0.33 tolerated(0.12) benign(0.007) TCGA-B0-5098-01 12 129559558 129559558 G A TMEM132D Missense_Mutation p.T721M 0.35 tolerated(0.08) benign(0.202) TCGA-B0-5098-01 12 130647929 130647929 A G FZD10 Missense_Mutation p.M148V 0.39 deleterious(0.03) probably_damaging(0.949) TCGA-B0-5098-01 12 131466593 131466593 T C GPR133 Missense_Mutation p.S159P 0.30 deleterious(0.01) possibly_damaging(0.811) TCGA-B0-5098-01 12 132537936 132537936 C - EP400 Frame_Shift_Del p.P2509Rfs*86 0.45 TCGA-B0-5098-01 12 14628904 14628904 T C ATF7IP Splice_Site p.X981_splice 0.33 TCGA-B0-5098-01 12 14781652 14781652 T - GUCY2C Frame_Shift_Del p.N726Tfs*39 0.22 TCGA-B0-5098-01 12 1702059 1702059 G A FBXL14 Nonsense_Mutation p.Q392* 0.38 TCGA-B0-5098-01 12 27461270 27461270 A G STK38L Splice_Site p.X63_splice 0.38 TCGA-B0-5098-01 12 28460651 28460651 T C CCDC91 Missense_Mutation p.I182T 0.36 deleterious(0.05) benign(0.1) TCGA-B0-5098-01 12 29920872 29920872 T C TMTC1 Missense_Mutation p.T147A 0.33 tolerated(0.19) benign(0.012) TCGA-B0-5098-01 12 309834 309834 C - SLC6A12 Frame_Shift_Del p.V232Sfs*17 0.31 TCGA-B0-5098-01 12 40761586 40761586 C G LRRK2 3'UTR 0.37 TCGA-B0-5098-01 12 43826136 43826136 G A ADAMTS20 Missense_Mutation p.P1023S 0.30 deleterious(0.01) possibly_damaging(0.858) TCGA-B0-5098-01 12 4721810 4721810 G T DYRK4 Missense_Mutation p.R416M 0.23 deleterious(0.01) possibly_damaging(0.77) TCGA-B0-5098-01 12 49953240 49953240 C T MCRS1 Missense_Mutation p.R374H 0.31 tolerated(0.07) possibly_damaging(0.828) TCGA-B0-5098-01 12 50031329 50031329 G T PRPF40B Missense_Mutation p.S546I 0.33 deleterious(0) probably_damaging(0.999) TCGA-B0-5098-01 12 5020549 5020549 C T KCNA1 Missense_Mutation p.T2M 0.33 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-B0-5098-01 12 5155012 5155012 G - KCNA5 Frame_Shift_Del p.T569Pfs*15 0.34 TCGA-B0-5098-01 12 53045390 53045390 A G KRT2 Silent p.R179R 0.08 TCGA-B0-5098-01 12 53202484 53202484 G T KRT4 Missense_Mutation p.L329M 0.28 deleterious(0.04) possibly_damaging(0.861) TCGA-B0-5098-01 12 53687385 53687385 T A ESPL1 3'UTR 0.40 TCGA-B0-5098-01 12 54367383 54367383 T A HOXC11 Missense_Mutation p.S120T 0.38 tolerated(0.42) benign(0.253) TCGA-B0-5098-01 12 54797504 54797504 G A ITGA5 Silent p.L561L 0.36 TCGA-B0-5098-01 12 56479046 56479046 C T ERBB3 Intron 0.38 TCGA-B0-5098-01 12 56566385 56566385 T - SMARCC2 Frame_Shift_Del p.K585Rfs*72 0.31 TCGA-B0-5098-01 12 57498535 57498535 A G STAT6 Missense_Mutation p.C355R 0.40 deleterious(0.03) probably_damaging(0.94) TCGA-B0-5098-01 12 57605026 57605026 C T LRP1 Silent p.C4328C 0.32 TCGA-B0-5098-01 12 57894296 57894296 C T MARS Silent p.V428V 0.18 TCGA-B0-5098-01 12 57976896 57976896 G A KIF5A Silent p.P1011P 0.23 TCGA-B0-5098-01 12 58000848 58000848 C - DTX3 Frame_Shift_Del p.P69Rfs*9 0.34 TCGA-B0-5098-01 12 59274640 59274640 C T LRIG3 Silent p.Q508Q 0.32 TCGA-B0-5098-01 12 6076653 6076653 A G VWF Missense_Mutation p.L2629P 0.29 tolerated(0.28) benign(0.164) TCGA-B0-5098-01 12 6122671 6122671 A G VWF Missense_Mutation p.S1866P 0.05 deleterious(0.01) possibly_damaging(0.665) TCGA-B0-5098-01 12 6666071 6666071 T C NOP2 3'UTR 0.27 TCGA-B0-5098-01 12 6710842 6710842 T C CHD4 Missense_Mutation p.N177D 0.36 deleterious(0) possibly_damaging(0.874) TCGA-B0-5098-01 12 6833643 6833643 A G COPS7A Intron 0.23 TCGA-B0-5098-01 12 6924067 6924067 T A CD4 Silent p.S172S 0.27 TCGA-B0-5098-01 12 72332722 72332722 C A TPH2 5'UTR 0.33 TCGA-B0-5098-01 12 75900592 75900592 T G KRR1 Missense_Mutation p.K121N 0.39 deleterious(0.01) benign(0.191) TCGA-B0-5098-01 12 77257107 77257107 A G CSRP2 Silent p.L44L 0.34 TCGA-B0-5098-01 12 80660299 80660299 C A OTOGL Missense_Mutation p.L756I 0.30 deleterious(0) probably_damaging(0.931) TCGA-B0-5098-01 12 83444732 83444732 A - TMTC2 Frame_Shift_Del p.A737Qfs*4 0.30 TCGA-B0-5098-01 12 85521681 85521681 G T LRRIQ1 Missense_Mutation p.R1360M 0.31 deleterious(0.01) possibly_damaging(0.784) TCGA-B0-5098-01 12 9268459 9268459 G A A2M 5'UTR 0.39 TCGA-B0-5098-01 12 94975436 94975436 A G TMCC3 Silent p.Y319Y 0.13 TCGA-B0-5098-01 12 96259866 96259866 T - SNRPF 3'UTR 0.34 TCGA-B0-5098-01 12 99100325 99100325 T C APAF1 Silent p.H886H 0.35 TCGA-B0-5098-01 13 111935618 111935618 C A ARHGEF7 Missense_Mutation p.L641M 0.38 deleterious(0.02) probably_damaging(0.993) TCGA-B0-5098-01 13 113965071 113965071 A - LAMP1 Frame_Shift_Del p.K152Nfs*12 0.30 TCGA-B0-5098-01 13 20398645 20398645 T - ZMYM5 Frame_Shift_Del p.N661Mfs*40 0.30 TCGA-B0-5098-01 13 21205180 21205180 A - IFT88 Frame_Shift_Del p.K453Rfs*5 0.32 TCGA-B0-5098-01 13 28155884 28155884 C T LNX2 5'UTR 0.32 TCGA-B0-5098-01 13 28794507 28794507 T C PAN3 Missense_Mutation p.L331S 0.36 tolerated(0.05) benign(0.219) TCGA-B0-5098-01 13 29599785 29599785 C A MTUS2 Missense_Mutation p.P327H 0.06 deleterious(0) possibly_damaging(0.723) TCGA-B0-5098-01 13 29600226 29600226 A G MTUS2 Missense_Mutation p.K474R 0.27 tolerated(0.57) benign(0) TCGA-B0-5098-01 13 34410516 34410516 T C RFC3 3'UTR 0.28 TCGA-B0-5098-01 13 39262566 39262566 C A FREM2 Missense_Mutation p.P362Q 0.28 deleterious(0.01) benign(0.03) TCGA-B0-5098-01 13 41705364 41705364 C A KBTBD6 Missense_Mutation p.M428I 0.29 tolerated(0.18) benign(0.201) TCGA-B0-5098-01 13 42793830 42793830 T C DGKH Silent p.P1114P 0.33 TCGA-B0-5098-01 13 49051536 49051536 A G RB1 Silent p.E903E 0.43 TCGA-B0-5098-01 13 73340159 73340159 T C DIS3 Missense_Mutation p.M641V 0.22 tolerated(0.77) benign(0.006) TCGA-B0-5098-01 13 77759324 77759326 TAT - MYCBP2 In_Frame_Del p.N1506del 0.35 TCGA-B0-5098-01 13 86368261 86368261 C T SLITRK6 Missense_Mutation p.E795K 0.37 tolerated(0.1) benign(0.08) TCGA-B0-5098-01 13 95264569 95264569 A G GPR180 Missense_Mutation p.I144V 0.29 tolerated(0.23) benign(0.022) TCGA-B0-5098-01 13 95822853 95822853 A G ABCC4 Missense_Mutation p.I586T 0.35 tolerated(0.42) benign(0.13) TCGA-B0-5098-01 14 100129284 100129284 G A HHIPL1 Missense_Mutation p.G525D 0.36 tolerated(0.3) benign(0.346) TCGA-B0-5098-01 14 105421090 105421090 A G AHNAK2 Missense_Mutation p.L233P 0.38 benign(0.073) TCGA-B0-5098-01 14 106091234 106091234 T C IGHG4 Silent p.K220K 0.35 TCGA-B0-5098-01 14 20215693 20215693 T C OR4Q3 Missense_Mutation p.I36T 0.70 tolerated(0.39) benign(0) TCGA-B0-5098-01 14 21558603 21558603 C T ZNF219 3'UTR 0.22 TCGA-B0-5098-01 14 23445902 23445902 C A AJUBA Missense_Mutation p.K376N 0.70 deleterious(0) probably_damaging(0.937) TCGA-B0-5098-01 14 24026241 24026241 T C THTPA Missense_Mutation p.L92P 0.26 deleterious(0) probably_damaging(0.997) TCGA-B0-5098-01 14 24424296 24424296 G A DHRS4 Missense_Mutation p.V61I 0.61 tolerated(1) benign(0.018) TCGA-B0-5098-01 14 24424297 24424297 T G DHRS4 Missense_Mutation p.V61G 0.61 deleterious(0) probably_damaging(0.974) TCGA-B0-5098-01 14 24619565 24619565 C T RNF31 Silent p.L369L 0.40 TCGA-B0-5098-01 14 31420083 31420083 T A STRN3 Missense_Mutation p.R176S 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-B0-5098-01 14 50584991 50584991 T - SOS2 3'UTR 0.52 TCGA-B0-5098-01 14 50666497 50666497 A G SOS2 Missense_Mutation p.I141T 0.68 deleterious(0) probably_damaging(0.998) TCGA-B0-5098-01 14 54417384 54417384 C T BMP4 Missense_Mutation p.R198Q 0.36 tolerated(0.08) possibly_damaging(0.645) TCGA-B0-5098-01 14 55411062 55411062 A G WDHD1 Silent p.T1059T 0.37 TCGA-B0-5098-01 14 65240097 65240097 T C SPTB Silent p.A1673A 0.03 TCGA-B0-5098-01 14 73987615 73987615 G A HEATR4 Missense_Mutation p.P337L 0.42 tolerated(0.06) benign(0.02) TCGA-B0-5098-01 14 77844713 77844713 A C SAMD15 Silent p.R318R 0.31 TCGA-B0-5098-01 14 81609994 81609994 G A TSHR Missense_Mutation p.R531Q 0.80 tolerated(0.2) probably_damaging(0.969) TCGA-B0-5098-01 14 91927912 91927913 TT - SMEK1 Frame_Shift_Del p.N722Pfs*20 0.49 TCGA-B0-5098-01 14 94088152 94088152 C T UNC79 Missense_Mutation p.R1348W 0.67 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-B0-5098-01 15 22955133 22955133 T C CYFIP1 Silent p.S509S 0.10 TCGA-B0-5098-01 15 25966975 25966975 A G ATP10A Silent p.L398L 0.29 TCGA-B0-5098-01 15 28566593 28566593 T C HERC2 5'UTR 0.18 TCGA-B0-5098-01 15 35530015 35530015 C T ANP32AP1 RNA 0.39 TCGA-B0-5098-01 15 40661343 40661343 C T DISP2 Silent p.L1010L 0.30 TCGA-B0-5098-01 15 41067229 41067231 CTT - DNAJC17 In_Frame_Del p.K200del 0.36 TCGA-B0-5098-01 15 41192359 41192359 T C VPS18 Missense_Mutation p.L448P 0.29 tolerated(0.27) benign(0.284) TCGA-B0-5098-01 15 42132730 42132730 T C PLA2G4B Missense_Mutation p.S262P 0.32 tolerated(0.13) benign(0.006) TCGA-B0-5098-01 15 42364521 42364521 A T PLA2G4D Missense_Mutation p.L463M 0.30 deleterious(0.02) possibly_damaging(0.573) TCGA-B0-5098-01 15 43656464 43656464 C T ZSCAN29 Missense_Mutation p.E447K 0.37 deleterious(0.01) possibly_damaging(0.721) TCGA-B0-5098-01 15 44888371 44888371 G A SPG11 Silent p.C1448C 0.32 TCGA-B0-5098-01 15 49076301 49076301 C T CEP152 Missense_Mutation p.R397H 0.31 tolerated(0.77) benign(0.009) TCGA-B0-5098-01 15 50833262 50833262 T C USP50 Missense_Mutation p.Y215C 0.33 tolerated(0.15) benign(0.033) TCGA-B0-5098-01 15 51397273 51397273 C T TNFAIP8L3 Missense_Mutation p.G34D 0.35 deleterious_low_confidence(0.01) benign(0.095) TCGA-B0-5098-01 15 53907852 53907852 T C WDR72 Missense_Mutation p.S851G 0.33 tolerated(0.38) benign(0.001) TCGA-B0-5098-01 15 55841138 55841138 T C PYGO1 Silent p.P35P 0.34 TCGA-B0-5098-01 15 65962172 65962172 C T DENND4A Missense_Mutation p.A1577T 0.10 tolerated(0.54) benign(0) TCGA-B0-5098-01 15 66618704 66618704 T C DIS3L Splice_Site p.X734_splice 0.33 TCGA-B0-5098-01 15 66790065 66790065 A G SNAPC5 Missense_Mutation p.L2P 0.26 deleterious_low_confidence(0) unknown(0) TCGA-B0-5098-01 15 69011755 69011755 C T CORO2B Missense_Mutation p.P392L 0.31 deleterious(0) probably_damaging(0.992) TCGA-B0-5098-01 15 74281026 74281026 C A STOML1 Missense_Mutation p.A170S 0.38 tolerated(0.07) possibly_damaging(0.54) TCGA-B0-5098-01 15 74315449 74315449 C T PML Missense_Mutation p.R295C 0.25 deleterious(0.03) possibly_damaging(0.77) TCGA-B0-5098-01 15 75499804 75499804 C - C15orf39 Frame_Shift_Del p.P474Qfs*91 0.38 TCGA-B0-5098-01 15 86806023 86806023 A G AGBL1 Silent p.E282E 0.28 TCGA-B0-5098-01 15 89056277 89056277 A G DET1 Missense_Mutation p.F531L 0.25 deleterious(0.01) possibly_damaging(0.841) TCGA-B0-5098-01 15 89421180 89421180 G A HAPLN3 3'UTR 0.35 TCGA-B0-5098-01 15 90021181 90021181 C T RHCG Missense_Mutation p.A288T 0.31 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 15 91428282 91428282 T C FES Missense_Mutation p.F3L 0.30 deleterious(0.03) probably_damaging(1) TCGA-B0-5098-01 16 15126717 15126717 G T PDXDC1 Splice_Site p.X524_splice 0.39 TCGA-B0-5098-01 16 17294474 17294474 G A XYLT1 Silent p.S317S 0.34 TCGA-B0-5098-01 16 19775436 19775436 T G IQCK Splice_Site p.X202_splice 0.29 TCGA-B0-5098-01 16 19800174 19800174 T A IQCK Missense_Mutation p.I207N 0.08 deleterious(0) probably_damaging(0.971) TCGA-B0-5098-01 16 2026055 2026055 A G TBL3 Splice_Site p.X377_splice 0.04 TCGA-B0-5098-01 16 20327330 20327330 T C GP2 Silent p.V486V 0.05 TCGA-B0-5098-01 16 2043042 2043042 G A SYNGR3 Missense_Mutation p.S220N 0.38 tolerated(0.52) benign(0.003) TCGA-B0-5098-01 16 2048224 2048224 T C ZNF598 3'UTR 0.30 TCGA-B0-5098-01 16 20796371 20796371 A - ACSM3 Frame_Shift_Del p.K363Nfs*21 0.32 TCGA-B0-5098-01 16 20871211 20871211 A G DCUN1D3 Silent p.T304T 0.35 TCGA-B0-5098-01 16 21272583 21272583 T C CRYM Missense_Mutation p.K291R 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-B0-5098-01 16 23690512 23690513 TC - PLK1 Frame_Shift_Del p.L88Afs*62 0.35 TCGA-B0-5098-01 16 24920260 24920260 A T SLC5A11 Missense_Mutation p.D498V 0.47 deleterious(0.02) probably_damaging(0.997) TCGA-B0-5098-01 16 2834653 2834653 T C PRSS33 Missense_Mutation p.S279G 0.25 deleterious(0.04) benign(0.006) TCGA-B0-5098-01 16 30419389 30419389 G A ZNF771 Silent p.Q5Q 0.41 TCGA-B0-5098-01 16 3076526 3076526 C A THOC6 Missense_Mutation p.L141I 0.34 deleterious(0.02) possibly_damaging(0.903) TCGA-B0-5098-01 16 31374511 31374511 T C ITGAX Missense_Mutation p.V509A 0.28 tolerated(0.09) benign(0.009) TCGA-B0-5098-01 16 336667 336667 G A PDIA2 Missense_Mutation p.E452K 0.38 deleterious(0) probably_damaging(0.996) TCGA-B0-5098-01 16 3433725 3433725 A C ZSCAN32 Intron 0.33 TCGA-B0-5098-01 16 48595100 48595100 G T N4BP1 Missense_Mutation p.T485K 0.33 tolerated(0.93) benign(0.021) TCGA-B0-5098-01 16 50328621 50328621 G C ADCY7 Missense_Mutation p.V303L 0.40 tolerated(0.12) benign(0.103) TCGA-B0-5098-01 16 53922839 53922839 A G FTO Silent p.A405A 0.33 TCGA-B0-5098-01 16 55857583 55857583 T A CES1 Missense_Mutation p.I140F 0.11 deleterious(0) probably_damaging(0.988) TCGA-B0-5098-01 16 56377829 56377829 C T GNAO1 Silent p.I344I 0.34 TCGA-B0-5098-01 16 57060873 57060873 C A NLRC5 Missense_Mutation p.P673H 0.42 deleterious(0.01) possibly_damaging(0.75) TCGA-B0-5098-01 16 58031166 58031166 C T ZNF319 Missense_Mutation p.R335H 0.23 deleterious(0) probably_damaging(0.999) TCGA-B0-5098-01 16 68321684 68321685 - G SLC7A6 Frame_Shift_Ins p.T189Hfs*25 0.30 TCGA-B0-5098-01 16 69832614 69832614 C T WWP2 Missense_Mutation p.R34C 0.27 deleterious(0) probably_damaging(0.996) TCGA-B0-5098-01 16 71674528 71674528 G - MARVELD3 Frame_Shift_Del p.V279Sfs*31 0.13 TCGA-B0-5098-01 16 71767002 71767002 G T AP1G1 Missense_Mutation p.L813I 0.33 tolerated(0.58) benign(0.001) TCGA-B0-5098-01 16 72184607 72184607 T C PMFBP1 Missense_Mutation p.N179S 0.03 tolerated(0.15) benign(0.02) TCGA-B0-5098-01 16 72845484 72845484 T C ZFHX3 Missense_Mutation p.I1286V 0.48 benign(0.261) TCGA-B0-5098-01 16 72993580 72993580 G A ZFHX3 Silent p.G155G 0.31 TCGA-B0-5098-01 16 77331255 77331255 G A ADAMTS18 Missense_Mutation p.S911L 0.40 tolerated(0.05) possibly_damaging(0.839) TCGA-B0-5098-01 16 77331297 77331297 T C ADAMTS18 Missense_Mutation p.K897R 0.34 tolerated(0.41) benign(0.084) TCGA-B0-5098-01 16 84031849 84031849 G A NECAB2 Missense_Mutation p.E297K 0.36 tolerated(0.42) probably_damaging(0.935) TCGA-B0-5098-01 16 84230327 84230327 T C ADAD2 Missense_Mutation p.V616A 0.11 tolerated(0.3) benign(0.009) TCGA-B0-5098-01 16 84495688 84495688 T C ATP2C2 Missense_Mutation p.I892T 0.31 tolerated(0.1) benign(0.008) TCGA-B0-5098-01 16 85010045 85010045 C - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.31 TCGA-B0-5098-01 16 90142264 90142264 C G PRDM7 Missense_Mutation p.E19Q 0.50 tolerated_low_confidence(0.23) benign(0.055) TCGA-B0-5098-01 16 9857380 9857380 T - GRIN2A Frame_Shift_Del p.S1341Afs*56 0.34 TCGA-B0-5098-01 17 10299971 10299971 T C MYH8 Missense_Mutation p.E1476G 0.35 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 17 10348583 10348583 C A MYH4 Nonsense_Mutation p.E1756* 0.06 TCGA-B0-5098-01 17 11550505 11550505 T G DNAH9 Missense_Mutation p.F696C 0.39 probably_damaging(1) TCGA-B0-5098-01 17 12626277 12626278 - A MYOCD Frame_Shift_Ins p.N125Kfs*16 0.22 TCGA-B0-5098-01 17 12905673 12905673 C T ELAC2 Missense_Mutation p.E408K 0.37 tolerated(0.11) benign(0.104) TCGA-B0-5098-01 17 1557299 1557299 G A PRPF8 Missense_Mutation p.A2000V 0.29 deleterious(0.01) benign(0.027) TCGA-B0-5098-01 17 16734765 16734765 C T KRT16P2 RNA 0.27 TCGA-B0-5098-01 17 17425656 17425656 G T PEMT Silent p.P86P 0.14 TCGA-B0-5098-01 17 18059537 18059537 C T MYO15A Missense_Mutation p.P2830S 0.30 unknown(0) TCGA-B0-5098-01 17 18219509 18219509 G A SMCR8 Missense_Mutation p.V136M 0.31 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 17 18916767 18916767 G A SLC5A10 Missense_Mutation p.G359R 0.30 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 17 19287984 19287984 T C MFAP4 Missense_Mutation p.T211A 0.29 deleterious(0) probably_damaging(0.986) TCGA-B0-5098-01 17 19651692 19651692 C T ALDH3A1 5'Flank 0.30 TCGA-B0-5098-01 17 25633986 25633986 A G WSB1 Intron 0.38 TCGA-B0-5098-01 17 26653714 26653714 C T TMEM97 Silent p.T142T 0.39 TCGA-B0-5098-01 17 26943843 26943843 T C KIAA0100 Intron 0.42 TCGA-B0-5098-01 17 29556200 29556200 G A NF1 Missense_Mutation p.S856N 0.29 tolerated(0.25) benign(0.001) TCGA-B0-5098-01 17 29647410 29647410 C T EVI2A Missense_Mutation p.A14T 0.06 tolerated_low_confidence(0.39) benign(0.008) TCGA-B0-5098-01 17 29664535 29664536 GA - NF1 Frame_Shift_Del p.E2195Dfs*46 0.26 TCGA-B0-5098-01 17 30800953 30800953 A G PSMD11 Missense_Mutation p.M260V 0.28 deleterious(0.01) benign(0.029) TCGA-B0-5098-01 17 3195465 3195465 G T OR3A1 Missense_Mutation p.R138S 0.32 tolerated(0.4) possibly_damaging(0.491) TCGA-B0-5098-01 17 33510469 33510469 C T UNC45B Silent p.D801D 0.33 TCGA-B0-5098-01 17 34050848 34050848 A G AP2B1 3'UTR 0.40 TCGA-B0-5098-01 17 34068079 34068079 A G RASL10B Missense_Mutation p.I123V 0.39 tolerated(0.38) benign(0.17) TCGA-B0-5098-01 17 34493433 34493433 G A TBC1D3B Missense_Mutation p.S531L 0.30 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-B0-5098-01 17 34964873 34964873 A G MRM1 3'UTR 0.29 TCGA-B0-5098-01 17 36705381 36705381 G T SRCIN1 Missense_Mutation p.R1010S 0.31 deleterious(0) probably_damaging(0.999) TCGA-B0-5098-01 17 36927421 36927421 G A PIP4K2B Silent p.D304D 0.27 TCGA-B0-5098-01 17 37565271 37565271 G A MED1 Missense_Mutation p.P1068L 0.30 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-B0-5098-01 17 37619372 37619372 T C CDK12 Splice_Site p.X349_splice 0.30 TCGA-B0-5098-01 17 3775908 3775908 T C CAMKK1 Missense_Mutation p.D393G 0.21 deleterious(0.04) probably_damaging(0.991) TCGA-B0-5098-01 17 37882078 37882078 C A ERBB2 Silent p.T948T 0.33 TCGA-B0-5098-01 17 39279722 39279722 C T KRTAP4-12 3'UTR 0.50 TCGA-B0-5098-01 17 40049293 40049293 G T ACLY Missense_Mutation p.P532T 0.06 tolerated(0.06) probably_damaging(0.932) TCGA-B0-5098-01 17 40263345 40263345 G A DHX58 Silent p.S113S 0.33 TCGA-B0-5098-01 17 41003352 41003352 C T AOC3 5'UTR 0.34 TCGA-B0-5098-01 17 41582145 41582145 G A DHX8 Silent p.E560E 0.33 TCGA-B0-5098-01 17 42430183 42430184 CT - GRN 3'UTR 0.23 TCGA-B0-5098-01 17 43214792 43214793 - C ACBD4 Frame_Shift_Ins p.K160Qfs*160 0.34 TCGA-B0-5098-01 17 4434362 4434362 T C SPNS2 Missense_Mutation p.I247T 0.39 deleterious(0) probably_damaging(0.998) TCGA-B0-5098-01 17 45669320 45669320 A G NPEPPS Splice_Site p.X421_splice 0.06 TCGA-B0-5098-01 17 45757396 45757396 G A KPNB1 Missense_Mutation p.M788I 0.38 tolerated(0.4) benign(0.006) TCGA-B0-5098-01 17 47484173 47484173 G A PHB Missense_Mutation p.A185V 0.32 tolerated(0.08) benign(0.049) TCGA-B0-5098-01 17 4805679 4805679 G T C17orf107 3'UTR 0.30 TCGA-B0-5098-01 17 4837372 4837373 - A GP1BA Frame_Shift_Ins p.T494Nfs*4 0.35 TCGA-B0-5098-01 17 5280457 5280457 T C RABEP1 Missense_Mutation p.V691A 0.33 tolerated(0.42) benign(0.044) TCGA-B0-5098-01 17 56492887 56492887 T C RNF43 Missense_Mutation p.M18V 0.29 deleterious(0) probably_damaging(0.977) TCGA-B0-5098-01 17 58012656 58012656 A - RPS6KB1 Frame_Shift_Del p.K326Sfs*3 0.27 TCGA-B0-5098-01 17 59999160 59999160 A - INTS2 Frame_Shift_Del p.F162Sfs*33 0.22 TCGA-B0-5098-01 17 61623279 61623279 C T KCNH6 3'UTR 0.39 TCGA-B0-5098-01 17 61766161 61766161 A G MAP3K3 Missense_Mutation p.Q295R 0.32 tolerated(0.49) benign(0.053) TCGA-B0-5098-01 17 61781804 61781804 G - STRADA Frame_Shift_Del p.R333Gfs*42 0.40 TCGA-B0-5098-01 17 61898462 61898462 G A FTSJ3 Missense_Mutation p.R634C 0.34 tolerated(0.1) benign(0.007) TCGA-B0-5098-01 17 66397567 66397567 C T ARSG Missense_Mutation p.R427C 0.28 tolerated(0.1) benign(0.022) TCGA-B0-5098-01 17 7365705 7365705 T C ZBTB4 Missense_Mutation p.S866G 0.29 benign(0.017) TCGA-B0-5098-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.27 TCGA-B0-5098-01 17 76354878 76354878 C - SOCS3 Frame_Shift_Del p.G100Afs*79 0.37 TCGA-B0-5098-01 17 76388741 76388741 A G PGS1 Missense_Mutation p.M110V 0.21 deleterious(0.03) benign(0.01) TCGA-B0-5098-01 17 7728027 7728027 G A DNAH2 Missense_Mutation p.M3945I 0.06 benign(0.026) TCGA-B0-5098-01 17 7748975 7748975 C - KDM6B Frame_Shift_Del p.P36Lfs*162 0.34 TCGA-B0-5098-01 17 77710966 77710966 G A ENPP7 Missense_Mutation p.V385I 0.46 tolerated(0.42) benign(0.046) TCGA-B0-5098-01 17 78113889 78113889 A G EIF4A3 Silent p.I141I 0.36 TCGA-B0-5098-01 17 7834023 7834023 G A TRAPPC1 Silent p.P113P 0.32 TCGA-B0-5098-01 17 78704364 78704364 A C RPTOR Missense_Mutation p.Y171S 0.29 deleterious(0) probably_damaging(0.983) TCGA-B0-5098-01 17 79409727 79409727 A T RP11-1055B8.7 Missense_Mutation p.E451V 0.54 probably_damaging(0.996) TCGA-B0-5098-01 17 80789303 80789303 C T ZNF750 Missense_Mutation p.R343Q 0.30 tolerated(0.08) benign(0.048) TCGA-B0-5098-01 17 81006692 81006692 G T B3GNTL1 Intron 0.12 TCGA-B0-5098-01 17 8409751 8409751 G C MYH10 Missense_Mutation p.L1091V 0.36 probably_damaging(0.995) TCGA-B0-5098-01 17 8421992 8421992 T G MYH10 Missense_Mutation p.I821L 0.34 probably_damaging(0.976) TCGA-B0-5098-01 17 9583621 9583621 C T USP43 Missense_Mutation p.A348V 0.27 deleterious(0.04) benign(0.405) TCGA-B0-5098-01 17 9631817 9631817 T C USP43 Missense_Mutation p.M961T 0.24 tolerated(0.63) benign(0.001) TCGA-B0-5098-01 18 19996082 19996082 C T CTAGE1 Missense_Mutation p.A565T 0.31 deleterious(0.02) benign(0.016) TCGA-B0-5098-01 18 21710336 21710336 G A TTC39C Silent p.P526P 0.35 TCGA-B0-5098-01 18 28598103 28598103 A G DSC3 Silent p.N399N 0.34 TCGA-B0-5098-01 18 29046491 29046491 A G DSG3 Splice_Site p.X471_splice 0.34 TCGA-B0-5098-01 18 3085102 3085102 T G MYOM1 Missense_Mutation p.E1427A 0.25 deleterious(0.03) possibly_damaging(0.899) TCGA-B0-5098-01 18 39609379 39609379 C T PIK3C3 Missense_Mutation p.R561C 0.28 deleterious(0.01) probably_damaging(0.95) TCGA-B0-5098-01 18 47812979 47812979 A G CXXC1 Silent p.H51H 0.26 TCGA-B0-5098-01 18 59814310 59814310 T - PIGN Frame_Shift_Del p.V234Lfs*32 0.28 TCGA-B0-5098-01 18 60612366 60612366 T C PHLPP1 Silent p.L1062L 0.32 TCGA-B0-5098-01 18 61256926 61256926 A T SERPINB13 Missense_Mutation p.I68L 0.10 tolerated(0.3) benign(0.004) TCGA-B0-5098-01 18 6949184 6949184 C A LAMA1 Silent p.V2824V 0.34 TCGA-B0-5098-01 18 697349 697349 C T ENOSF1 Missense_Mutation p.C88Y 0.39 deleterious(0.02) possibly_damaging(0.691) TCGA-B0-5098-01 18 74587548 74587548 C A ZNF236 Silent p.A254A 0.42 TCGA-B0-5098-01 18 77193724 77193724 C A NFATC1 Missense_Mutation p.H445N 0.38 deleterious(0) probably_damaging(0.919) TCGA-B0-5098-01 18 77895513 77895513 A - ADNP2 Frame_Shift_Del p.K740Sfs*3 0.35 TCGA-B0-5098-01 18 77896717 77896717 A G ADNP2 3'UTR 0.35 TCGA-B0-5098-01 18 8793021 8793021 A T SOGA2 Missense_Mutation p.E638V 0.37 deleterious(0.04) benign(0.015) TCGA-B0-5098-01 19 1037669 1037669 A G CNN2 Missense_Mutation p.K234E 0.52 deleterious(0.02) benign(0.376) TCGA-B0-5098-01 19 10787852 10787852 A G ILF3 Missense_Mutation p.D142G 0.04 tolerated(0.19) possibly_damaging(0.763) TCGA-B0-5098-01 19 11143964 11143964 A G SMARCA4 Splice_Site p.X1183_splice 0.51 TCGA-B0-5098-01 19 12126007 12126007 C A ZNF433 Nonsense_Mutation p.E559* 0.34 TCGA-B0-5098-01 19 13220782 13220782 G A TRMT1 Silent p.C351C 0.30 TCGA-B0-5098-01 19 17329220 17329220 G T USE1 Intron 0.32 TCGA-B0-5098-01 19 17430418 17430418 C T DDA1 Missense_Mutation p.R88C 0.36 tolerated(0.07) benign(0.017) TCGA-B0-5098-01 19 18329753 18329753 A - PDE4C Frame_Shift_Del p.Q355Rfs*6 0.30 TCGA-B0-5098-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.30 TCGA-B0-5098-01 19 19609378 19609378 G A GATAD2A Missense_Mutation p.A351T 0.41 deleterious(0.03) probably_damaging(0.987) TCGA-B0-5098-01 19 2918270 2918270 A G ZNF57 Missense_Mutation p.S551G 0.56 tolerated_low_confidence(0.51) benign(0.094) TCGA-B0-5098-01 19 36029483 36029483 A G GAPDHS Missense_Mutation p.Y116C 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-B0-5098-01 19 36047924 36047924 A G ATP4A Missense_Mutation p.M587T 0.34 tolerated(0.18) benign(0.374) TCGA-B0-5098-01 19 36128233 36128233 C T RBM42 Missense_Mutation p.R437C 0.31 deleterious(0) unknown(0) TCGA-B0-5098-01 19 36509856 36509856 C T CLIP3 Missense_Mutation p.R376Q 0.36 tolerated(0.15) benign(0.223) TCGA-B0-5098-01 19 36883652 36883655 TACA - ZFP82 Frame_Shift_Del p.N529Kfs*13 0.41 TCGA-B0-5098-01 19 38853150 38853150 T C CATSPERG Silent p.T764T 0.29 TCGA-B0-5098-01 19 39914446 39914446 C - PLEKHG2 Frame_Shift_Del p.L893Wfs*153 0.37 TCGA-B0-5098-01 19 41029412 41029412 C T SPTBN4 Silent p.H1241H 0.36 TCGA-B0-5098-01 19 41063199 41063199 C T SPTBN4 Missense_Mutation p.R1854W 0.41 deleterious(0) probably_damaging(0.978) TCGA-B0-5098-01 19 41306993 41306993 T A EGLN2 Silent p.S172S 0.30 TCGA-B0-5098-01 19 41307235 41307235 T G EGLN2 Missense_Mutation p.I253S 0.40 deleterious(0) probably_damaging(0.996) TCGA-B0-5098-01 19 42408499 42408499 C T ARHGEF1 Missense_Mutation p.R724W 0.40 deleterious(0.05) probably_damaging(0.987) TCGA-B0-5098-01 19 44471168 44471168 C A ZNF221 Missense_Mutation p.P505H 0.35 deleterious(0) probably_damaging(0.998) TCGA-B0-5098-01 19 44661005 44661005 A G ZNF234 Missense_Mutation p.Q279R 0.33 deleterious(0.04) possibly_damaging(0.826) TCGA-B0-5098-01 19 46290079 46290079 C T DMWD Silent p.S225S 0.35 TCGA-B0-5098-01 19 47725155 47725155 C T BBC3 Missense_Mutation p.A197T 0.08 tolerated_low_confidence(0.8) unknown(0) TCGA-B0-5098-01 19 47980969 47980969 A C KPTN Missense_Mutation p.V286G 0.23 deleterious(0) probably_damaging(0.997) TCGA-B0-5098-01 19 49490600 49490600 C T GYS1 Missense_Mutation p.V115M 0.25 deleterious(0.04) possibly_damaging(0.743) TCGA-B0-5098-01 19 49490607 49490607 A T GYS1 Silent p.P112P 0.29 TCGA-B0-5098-01 19 49641637 49641637 C - PPFIA3 Frame_Shift_Del p.R678Afs*50 0.24 TCGA-B0-5098-01 19 50391043 50391043 G A TBC1D17 Silent p.E537E 0.45 TCGA-B0-5098-01 19 50461598 50461598 G A SIGLEC11 Silent p.R531R 0.32 TCGA-B0-5098-01 19 50774688 50774688 C T MYH14 Missense_Mutation p.A1019V 0.29 deleterious(0.02) benign(0.429) TCGA-B0-5098-01 19 53367325 53367325 C T CTD-2331H12.5 5'Flank 0.28 TCGA-B0-5098-01 19 53914117 53914117 C T ZNF765 3'UTR 0.44 TCGA-B0-5098-01 19 54967841 54967841 G A LENG8 Missense_Mutation p.S491N 0.29 tolerated(0.82) benign(0.001) TCGA-B0-5098-01 19 58096319 58096319 G A ZIK1 Splice_Site p.X12_splice 0.33 TCGA-B0-5098-01 19 58290702 58290702 T C ZNF586 Silent p.L249L 0.34 TCGA-B0-5098-01 19 58772838 58772838 A G ZNF544 Missense_Mutation p.K289R 0.41 tolerated(0.32) benign(0.001) TCGA-B0-5098-01 19 7595355 7595355 G A MCOLN1 Missense_Mutation p.A515T 0.57 tolerated(0.09) probably_damaging(1) TCGA-B0-5098-01 19 7677807 7677807 C A CAMSAP3 Missense_Mutation p.L837M 0.50 deleterious(0.02) probably_damaging(1) TCGA-B0-5098-01 19 852901 852901 G T ELANE Silent p.V31V 0.62 TCGA-B0-5098-01 19 9059693 9059701 TGTGGCCTT - MUC16 In_Frame_Del p.K9249_T9251del 0.58 TCGA-B0-5098-01 1 10240031 10240031 C T UBE4B 3'UTR 0.50 TCGA-B0-5098-01 1 10384065 10384065 G A KIF1B Missense_Mutation p.E782K 0.05 deleterious(0.01) probably_damaging(0.944) TCGA-B0-5098-01 1 10502561 10502561 A T APITD1 Intron 0.55 TCGA-B0-5098-01 1 109806260 109806260 G A CELSR2 Missense_Mutation p.G1621D 0.51 deleterious(0.01) benign(0.325) TCGA-B0-5098-01 1 11182163 11182163 A G MTOR Missense_Mutation p.I2228T 0.44 deleterious(0.04) probably_damaging(0.991) TCGA-B0-5098-01 1 114243546 114243546 A G PHTF1 Missense_Mutation p.L639P 0.51 deleterious(0) probably_damaging(0.977) TCGA-B0-5098-01 1 115829215 115829215 G A NGF Missense_Mutation p.R68C 0.47 tolerated(0.1) benign(0.001) TCGA-B0-5098-01 1 117491858 117491858 A G PTGFRN Missense_Mutation p.K293E 0.57 tolerated(0.68) benign(0.257) TCGA-B0-5098-01 1 145367814 145367814 A G NBPF10 Silent p.P3470P 0.30 TCGA-B0-5098-01 1 145522547 145522547 C T PEX11B Silent p.S136S 0.55 TCGA-B0-5098-01 1 150532263 150532263 G A ADAMTSL4 Silent p.T990T 0.15 TCGA-B0-5098-01 1 151147019 151147019 A G TMOD4 Missense_Mutation p.M43T 0.37 tolerated(0.1) benign(0.007) TCGA-B0-5098-01 1 151259818 151259818 T C ZNF687 Missense_Mutation p.S351P 0.38 deleterious(0.01) benign(0.201) TCGA-B0-5098-01 1 151274728 151274728 G A PI4KB Nonsense_Mutation p.R535* 0.12 TCGA-B0-5098-01 1 151288484 151288484 G - PI4KB Frame_Shift_Del p.Y171Tfs*40 0.37 TCGA-B0-5098-01 1 151535065 151535065 G A TUFT1 Missense_Mutation p.G47D 0.35 deleterious(0.05) possibly_damaging(0.777) TCGA-B0-5098-01 1 151785790 151785790 G A RORC Missense_Mutation p.R367W 0.35 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 1 151789698 151789698 G A RORC Silent p.Y43Y 0.27 TCGA-B0-5098-01 1 152975911 152975911 A G SPRR3 Missense_Mutation p.T139A 0.28 tolerated(0.2) benign(0.061) TCGA-B0-5098-01 1 153507085 153507086 - A S100A6 3'UTR 0.28 TCGA-B0-5098-01 1 153904719 153904719 G A DENND4B Silent p.G1319G 0.36 TCGA-B0-5098-01 1 154227752 154227752 C T UBAP2L Silent p.G678G 0.16 TCGA-B0-5098-01 1 154408588 154408588 T C IL6R Splice_Site p.X317_splice 0.08 TCGA-B0-5098-01 1 154965266 154965266 A G FLAD1 Intron 0.29 TCGA-B0-5098-01 1 154997047 154997047 A G DCST2 Missense_Mutation p.L548P 0.33 deleterious(0) probably_damaging(0.994) TCGA-B0-5098-01 1 156011344 156011344 C - UBQLN4 Frame_Shift_Del p.A529Lfs*12 0.32 TCGA-B0-5098-01 1 156642564 156642564 A G NES Silent p.P472P 0.35 TCGA-B0-5098-01 1 158064480 158064480 C A KIRREL Missense_Mutation p.P615Q 0.31 deleterious(0.02) possibly_damaging(0.763) TCGA-B0-5098-01 1 158301156 158301156 G A CD1B Missense_Mutation p.H20Y 0.29 tolerated(0.07) benign(0) TCGA-B0-5098-01 1 160295426 160295427 - T COPA Frame_Shift_Ins p.N171Kfs*18 0.21 TCGA-B0-5098-01 1 161143534 161143534 C - B4GALT3 Intron 0.26 TCGA-B0-5098-01 1 161166188 161166188 C - ADAMTS4 Intron 0.29 TCGA-B0-5098-01 1 16261593 16261593 T C SPEN Missense_Mutation p.I2953T 0.55 possibly_damaging(0.852) TCGA-B0-5098-01 1 166135352 166135352 T A FAM78B Missense_Mutation p.K45M 0.60 deleterious(0) possibly_damaging(0.81) TCGA-B0-5098-01 1 179090956 179090956 A G ABL2 Missense_Mutation p.V245A 0.26 deleterious(0) probably_damaging(0.999) TCGA-B0-5098-01 1 179316774 179316774 A G SOAT1 Missense_Mutation p.H386R 0.28 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 1 182856608 182856608 A - DHX9 3'UTR 0.40 TCGA-B0-5098-01 1 190203594 190203594 C T BRINP3 Missense_Mutation p.R211Q 0.38 deleterious(0.01) possibly_damaging(0.598) TCGA-B0-5098-01 1 193053966 193053966 A G TROVE2 3'UTR 0.37 TCGA-B0-5098-01 1 196274362 196274362 A G KCNT2 Splice_Site p.X865_splice 0.39 TCGA-B0-5098-01 1 201779752 201779752 G A NAV1 Missense_Mutation p.V1555I 0.10 tolerated(1) benign(0.004) TCGA-B0-5098-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.36 TCGA-B0-5098-01 1 204948496 204948496 T C NFASC Missense_Mutation p.V662A 0.36 deleterious(0.02) possibly_damaging(0.848) TCGA-B0-5098-01 1 205238671 205238671 C - TMCC2 Frame_Shift_Del p.L449Wfs*13 0.32 TCGA-B0-5098-01 1 207300202 207300202 A G C4BPA Missense_Mutation p.D284G 0.26 tolerated(0.06) benign(0.091) TCGA-B0-5098-01 1 207643042 207643043 - T CR2 Frame_Shift_Ins p.C276Lfs*31 0.34 TCGA-B0-5098-01 1 220808856 220808856 C T MARK1 Missense_Mutation p.R421C 0.31 deleterious(0) probably_damaging(0.985) TCGA-B0-5098-01 1 224505589 224505589 C T NVL Missense_Mutation p.V59I 0.20 deleterious(0.05) probably_damaging(0.997) TCGA-B0-5098-01 1 225590865 225590865 C T LBR 3'UTR 0.38 TCGA-B0-5098-01 1 226128690 226128690 G A LEFTY2 Silent p.L51L 0.26 TCGA-B0-5098-01 1 228879349 228879349 G T RHOU Missense_Mutation p.E213D 0.26 tolerated(0.27) benign(0.023) TCGA-B0-5098-01 1 230805234 230805234 G A COG2 Missense_Mutation p.A243T 0.35 deleterious(0) probably_damaging(0.988) TCGA-B0-5098-01 1 232650521 232650521 G A SIPA1L2 Missense_Mutation p.H189Y 0.35 deleterious(0.02) probably_damaging(0.925) TCGA-B0-5098-01 1 246810501 246810501 T C CNST Missense_Mutation p.L333P 0.32 tolerated(0.22) benign(0.001) TCGA-B0-5098-01 1 247007131 247007131 T - AHCTF1 Frame_Shift_Del p.N2173Tfs*12 0.23 TCGA-B0-5098-01 1 247024444 247024444 T C AHCTF1 Missense_Mutation p.S1306G 0.40 tolerated(0.12) benign(0.015) TCGA-B0-5098-01 1 248738032 248738034 CTG - OR2T34 In_Frame_Del p.Q9del 0.28 TCGA-B0-5098-01 1 2524327 2524327 T C MMEL1 Missense_Mutation p.E649G 0.54 deleterious(0.01) benign(0.41) TCGA-B0-5098-01 1 26189565 26189567 AGA - PAQR7 In_Frame_Del p.F255del 0.60 TCGA-B0-5098-01 1 27875714 27875714 G A AHDC1 Silent p.Y971Y 0.53 TCGA-B0-5098-01 1 28178121 28178121 G C PPP1R8 3'UTR 0.20 TCGA-B0-5098-01 1 29314068 29314068 A - EPB41 Frame_Shift_Del p.T41Qfs*13 0.47 TCGA-B0-5098-01 1 32050813 32050813 C - TINAGL1 Frame_Shift_Del p.C309Vfs*2 0.19 TCGA-B0-5098-01 1 38274716 38274716 G A C1orf122 Missense_Mutation p.D102N 0.52 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-B0-5098-01 1 42914182 42914182 A G ZMYND12 Missense_Mutation p.V127A 0.45 tolerated(0.1) benign(0.146) TCGA-B0-5098-01 1 46500672 46500672 G T MAST2 Missense_Mutation p.R1444M 0.59 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B0-5098-01 1 46871324 46871324 G - FAAH Frame_Shift_Del p.G216Afs*19 0.36 TCGA-B0-5098-01 1 46972769 46972769 G A DMBX1 Silent p.Q29Q 0.47 TCGA-B0-5098-01 1 47078581 47078581 C T MOB3C Missense_Mutation p.R190H 0.59 tolerated(0.07) benign(0.001) TCGA-B0-5098-01 1 52841244 52841244 G A ORC1 Missense_Mutation p.R721W 0.61 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 1 6211094 6211094 C A CHD5 Missense_Mutation p.R331M 0.47 deleterious(0.03) possibly_damaging(0.682) TCGA-B0-5098-01 1 68614299 68614299 G A WLS Silent p.V337V 0.48 TCGA-B0-5098-01 1 9781596 9781596 C T PIK3CD Missense_Mutation p.R636W 0.48 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 20 24940354 24940354 G A CST7 3'UTR 0.29 TCGA-B0-5098-01 20 3002826 3002826 T C PTPRA Missense_Mutation p.C430R 0.27 deleterious(0.01) possibly_damaging(0.839) TCGA-B0-5098-01 20 3240664 3240664 T C C20orf194 Missense_Mutation p.K962E 0.33 deleterious(0.05) benign(0.204) TCGA-B0-5098-01 20 33603887 33603887 T A TRPC4AP Missense_Mutation p.D425V 0.04 deleterious(0) probably_damaging(0.932) TCGA-B0-5098-01 20 33875605 33875605 G A FAM83C Missense_Mutation p.P326L 0.50 tolerated(0.08) benign(0.01) TCGA-B0-5098-01 20 33961989 33961989 A T UQCC1 Missense_Mutation p.L135Q 0.36 tolerated(0.52) benign(0.009) TCGA-B0-5098-01 20 34219276 34219278 CCT G CPNE1 Splice_Site p.X244_splice 0.22 TCGA-B0-5098-01 20 34262295 34262295 C T NFS1 Silent p.K371K 0.33 TCGA-B0-5098-01 20 36572445 36572445 G A VSTM2L Silent p.T135T 0.32 TCGA-B0-5098-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.22 TCGA-B0-5098-01 20 36869844 36869844 G A KIAA1755 Missense_Mutation p.A230V 0.30 tolerated(0.32) benign(0.019) TCGA-B0-5098-01 20 37547271 37547272 AT - PPP1R16B Frame_Shift_Del p.M556Gfs*16 0.28 TCGA-B0-5098-01 20 39978750 39978750 C T LPIN3 Missense_Mutation p.A272V 0.21 tolerated(0.31) benign(0.044) TCGA-B0-5098-01 20 40081515 40081515 T C CHD6 Missense_Mutation p.D1063G 0.31 deleterious(0.04) benign(0.278) TCGA-B0-5098-01 20 41306678 41306678 A T PTPRT Nonsense_Mutation p.Y327* 0.35 TCGA-B0-5098-01 20 4163091 4163091 T C SMOX Missense_Mutation p.L322P 0.25 tolerated(0.2) benign(0.009) TCGA-B0-5098-01 20 43945707 43945707 A G RBPJL 3'UTR 0.26 TCGA-B0-5098-01 20 47612354 47612354 G A ARFGEF2 Silent p.Q1052Q 0.40 TCGA-B0-5098-01 20 4837534 4837534 A - SLC23A2 3'UTR 0.15 TCGA-B0-5098-01 20 50140530 50140531 - G NFATC2 Frame_Shift_Ins p.G84Rfs*8 0.31 TCGA-B0-5098-01 20 52193033 52193033 G A ZNF217 Missense_Mutation p.P757L 0.38 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 20 55027381 55027381 G A CASS4 Nonsense_Mutation p.W383* 0.31 TCGA-B0-5098-01 20 58422207 58422207 T C PHACTR3 3'UTR 0.36 TCGA-B0-5098-01 20 6025250 6025250 G - LRRN4 Frame_Shift_Del p.L313Sfs*19 0.25 TCGA-B0-5098-01 20 61845285 61845285 A G YTHDF1 Silent p.G21G 0.28 TCGA-B0-5098-01 20 62669801 62669801 G T ZNF512B Intron 0.15 TCGA-B0-5098-01 21 15599295 15599295 A G RBM11 Missense_Mutation p.H176R 0.03 tolerated(0.38) unknown(0) TCGA-B0-5098-01 21 30439048 30439048 A G CCT8 Missense_Mutation p.C205R 0.42 deleterious(0.01) possibly_damaging(0.876) TCGA-B0-5098-01 21 31859576 31859576 C A KRTAP19-2 Missense_Mutation p.R31I 0.30 deleterious_low_confidence(0) unknown(0) TCGA-B0-5098-01 21 32492816 32492816 C T TIAM1 Missense_Mutation p.R1549H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.574) TCGA-B0-5098-01 21 32513436 32513436 C T TIAM1 Silent p.E1258E 0.26 TCGA-B0-5098-01 21 37591690 37591690 T C DOPEY2 Silent p.L384L 0.35 TCGA-B0-5098-01 21 41416060 41416060 T C DSCAM Silent p.A1776A 0.05 TCGA-B0-5098-01 21 43519186 43519186 A G UMODL1 Missense_Mutation p.Q361R 0.21 tolerated(0.64) possibly_damaging(0.559) TCGA-B0-5098-01 21 45107597 45107597 G A RRP1B Missense_Mutation p.A448T 0.31 tolerated(0.57) benign(0.002) TCGA-B0-5098-01 21 45795728 45795728 G A TRPM2 Missense_Mutation p.A262T 0.33 deleterious(0) probably_damaging(0.98) TCGA-B0-5098-01 21 47532364 47532364 T C COL6A2 Missense_Mutation p.L196P 0.41 tolerated(0.15) benign(0.008) TCGA-B0-5098-01 21 47666843 47666843 C T MCM3AP Intron 0.33 TCGA-B0-5098-01 22 17446137 17446137 A G GAB4 Missense_Mutation p.L437P 0.34 deleterious(0.02) benign(0.29) TCGA-B0-5098-01 22 21140426 21140426 C T SERPIND1 Missense_Mutation p.A433V 0.46 tolerated(0.72) benign(0.003) TCGA-B0-5098-01 22 22842771 22842771 T - ZNF280B Frame_Shift_Del p.N318Mfs*5 0.10 TCGA-B0-5098-01 22 29706643 29706643 G T GAS2L1 Missense_Mutation p.V253L 0.64 deleterious(0) probably_damaging(0.949) TCGA-B0-5098-01 22 30051666 30051666 G A NF2 Splice_Site p.X200_splice 0.44 TCGA-B0-5098-01 22 32188793 32188793 G A DEPDC5 Missense_Mutation p.D253N 0.10 deleterious(0.01) possibly_damaging(0.788) TCGA-B0-5098-01 22 38168624 38168624 C T TRIOBP Missense_Mutation p.S2318L 0.66 deleterious(0) possibly_damaging(0.574) TCGA-B0-5098-01 22 38258975 38258975 G - EIF3L Splice_Site p.X147_splice 0.45 TCGA-B0-5098-01 22 39067238 39067238 G T CBY1 Intron 0.62 TCGA-B0-5098-01 22 39425422 39425422 A G APOBEC3D Silent p.L220L 0.52 TCGA-B0-5098-01 22 41574312 41574312 A G EP300 Silent p.P2199P 0.55 TCGA-B0-5098-01 22 41574993 41574993 T A EP300 3'UTR 0.57 TCGA-B0-5098-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.54 TCGA-B0-5098-01 22 50280639 50280639 C A ZBED4 Missense_Mutation p.S1110Y 0.50 tolerated(0.24) possibly_damaging(0.793) TCGA-B0-5098-01 2 102501664 102501664 T A MAP4K4 Missense_Mutation p.I1034N 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B0-5098-01 2 10729704 10729704 T - NOL10 Frame_Shift_Del p.E533Kfs*42 0.22 TCGA-B0-5098-01 2 109371408 109371408 G A RANBP2 Missense_Mutation p.M750I 0.31 tolerated(0.53) benign(0.004) TCGA-B0-5098-01 2 112751965 112751965 A G MERTK Missense_Mutation p.I478M 0.30 deleterious(0.04) benign(0.094) TCGA-B0-5098-01 2 128377733 128377733 G T MYO7B Intron 0.25 TCGA-B0-5098-01 2 152534241 152534241 G C NEB Silent p.G1204G 0.33 TCGA-B0-5098-01 2 158630598 158630598 A G ACVR1 Splice_Site p.X215_splice 0.32 TCGA-B0-5098-01 2 160295144 160295144 C A BAZ2B Missense_Mutation p.Q321H 0.30 benign(0.216) TCGA-B0-5098-01 2 165768159 165768159 A G SLC38A11 Missense_Mutation p.F261S 0.07 deleterious(0) probably_damaging(0.983) TCGA-B0-5098-01 2 168099974 168099974 C A XIRP2 Missense_Mutation p.T691N 0.35 possibly_damaging(0.477) TCGA-B0-5098-01 2 170030631 170030631 T C LRP2 Silent p.K3604K 0.38 TCGA-B0-5098-01 2 171092598 171092598 C A MYO3B Missense_Mutation p.P234H 0.35 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 2 17902257 17902257 T G SMC6 Missense_Mutation p.I299L 0.05 tolerated(0.54) benign(0.008) TCGA-B0-5098-01 2 179400235 179400235 G A TTN Nonsense_Mutation p.R33703* 0.31 TCGA-B0-5098-01 2 179604723 179604723 C A TTN Missense_Mutation p.G4413C 0.33 TCGA-B0-5098-01 2 17998261 17998261 G A MSGN1 Missense_Mutation p.G159D 0.37 deleterious(0) possibly_damaging(0.866) TCGA-B0-5098-01 2 185803770 185803770 A - ZNF804A 3'UTR 0.34 TCGA-B0-5098-01 2 197092917 197092917 G T HECW2 Missense_Mutation p.P1276T 0.34 deleterious(0.01) probably_damaging(1) TCGA-B0-5098-01 2 197157345 197157345 T C HECW2 Missense_Mutation p.N982D 0.25 tolerated(1) benign(0.002) TCGA-B0-5098-01 2 202591542 202591542 T C ALS2 Silent p.R1009R 0.07 TCGA-B0-5098-01 2 204304389 204304389 C T RAPH1 Missense_Mutation p.R1175Q 0.35 unknown(0) TCGA-B0-5098-01 2 20818698 20818698 C T HS1BP3 3'UTR 0.38 TCGA-B0-5098-01 2 211159122 211159122 C G MYL1 Missense_Mutation p.E109Q 0.35 deleterious(0.01) possibly_damaging(0.493) TCGA-B0-5098-01 2 21233356 21233356 T C APOB Silent p.S2128S 0.27 TCGA-B0-5098-01 2 219252307 219252307 T - SLC11A1 Frame_Shift_Del p.F199Lfs*5 0.33 TCGA-B0-5098-01 2 219900111 219900111 T - CCDC108 Intron 0.41 TCGA-B0-5098-01 2 220149689 220149689 T C DNAJB2 Missense_Mutation p.S319P 0.50 tolerated_low_confidence(0.13) benign(0.001) TCGA-B0-5098-01 2 220158855 220158855 T C PTPRN Intron 0.29 TCGA-B0-5098-01 2 231741659 231741659 T G ITM2C Missense_Mutation p.W180G 0.25 deleterious(0.01) probably_damaging(0.978) TCGA-B0-5098-01 2 231948335 231948335 A G PSMD1 Missense_Mutation p.Q527R 0.31 tolerated(0.3) benign(0.038) TCGA-B0-5098-01 2 233195446 233195446 G T DIS3L2 Missense_Mutation p.R657L 0.33 tolerated(0.14) benign(0.134) TCGA-B0-5098-01 2 233347836 233347836 A G ECEL1 Silent p.D520D 0.26 TCGA-B0-5098-01 2 233839410 233839410 A G NGEF Missense_Mutation p.I64T 0.32 tolerated_low_confidence(0.06) benign(0.001) TCGA-B0-5098-01 2 234669127 234669127 C T UGT1A8 Intron 0.08 TCGA-B0-5098-01 2 23977158 23977158 A G ATAD2B Missense_Mutation p.V1409A 0.26 deleterious(0.02) probably_damaging(0.978) TCGA-B0-5098-01 2 24042679 24042682 TGAG - ATAD2B Frame_Shift_Del p.H734Qfs*57 0.35 TCGA-B0-5098-01 2 242814374 242814375 - C CXXC11 Frame_Shift_Ins p.A226Cfs*12 0.20 TCGA-B0-5098-01 2 24305872 24305872 G A TP53I3 Nonsense_Mutation p.Q97* 0.32 TCGA-B0-5098-01 2 25966872 25966872 T G ASXL2 Silent p.P778P 0.31 TCGA-B0-5098-01 2 26203973 26203973 C T KIF3C Missense_Mutation p.G272S 0.36 benign(0) TCGA-B0-5098-01 2 26416536 26416536 C T HADHA Missense_Mutation p.V599M 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-B0-5098-01 2 27535925 27535925 C A MPV17 Missense_Mutation p.R41L 0.29 deleterious(0.01) benign(0.241) TCGA-B0-5098-01 2 28841245 28841245 C T PLB1 Silent p.A1098A 0.06 TCGA-B0-5098-01 2 29294843 29294843 C T C2orf71 Missense_Mutation p.C762Y 0.33 deleterious(0.05) benign(0.089) TCGA-B0-5098-01 2 37291914 37291914 C G HEATR5B Missense_Mutation p.C518S 0.27 tolerated(0.31) benign(0.014) TCGA-B0-5098-01 2 37501708 37501708 C T PRKD3 Missense_Mutation p.D503N 0.04 tolerated(0.53) benign(0.001) TCGA-B0-5098-01 2 43801837 43801837 G A THADA Missense_Mutation p.T456M 0.04 tolerated(0.15) benign(0.007) TCGA-B0-5098-01 2 43973054 43973054 C T PLEKHH2 Missense_Mutation p.P1202L 0.35 tolerated(0.15) benign(0.01) TCGA-B0-5098-01 2 44145522 44145522 C T LRPPRC Nonsense_Mutation p.W971* 0.25 TCGA-B0-5098-01 2 44175571 44175571 A G LRPPRC Missense_Mutation p.F608L 0.34 tolerated(0.12) possibly_damaging(0.728) TCGA-B0-5098-01 2 48050443 48050443 T - FBXO11 Frame_Shift_Del p.A486Pfs*31 0.30 TCGA-B0-5098-01 2 55749245 55749245 T C CCDC104 Silent p.D41D 0.22 TCGA-B0-5098-01 2 64863637 64863637 A G SERTAD2 Silent p.T123T 0.44 TCGA-B0-5098-01 2 65316203 65316203 T C RAB1A Missense_Mutation p.E97G 0.17 deleterious(0.03) benign(0.327) TCGA-B0-5098-01 2 70910816 70910816 G A ADD2 Silent p.S344S 0.21 TCGA-B0-5098-01 2 71189971 71189971 G A ATP6V1B1 Missense_Mutation p.E284K 0.31 deleterious(0.03) benign(0.139) TCGA-B0-5098-01 2 71654527 71654527 T C ZNF638 Missense_Mutation p.I1843T 0.32 tolerated(0.27) benign(0.006) TCGA-B0-5098-01 2 72725651 72725651 A - EXOC6B Frame_Shift_Del p.F423Lfs*5 0.29 TCGA-B0-5098-01 2 85280554 85280554 A G KCMF1 3'UTR 0.20 TCGA-B0-5098-01 2 96943382 96943382 A G SNRNP200 Silent p.A1942A 0.39 TCGA-B0-5098-01 3 100042461 100042461 T A TBC1D23 Silent p.T683T 0.30 TCGA-B0-5098-01 3 10346828 10346828 G A SEC13 Silent p.D199D 0.64 TCGA-B0-5098-01 3 107096890 107096890 A G CCDC54 Missense_Mutation p.I152M 0.28 deleterious(0.01) possibly_damaging(0.731) TCGA-B0-5098-01 3 108836867 108836867 G A MORC1 Missense_Mutation p.R14C 0.20 tolerated(0.24) benign(0.001) TCGA-B0-5098-01 3 111685552 111685552 T G PHLDB2 Splice_Site p.X1056_splice 0.68 TCGA-B0-5098-01 3 111719762 111719762 C A TAGLN3 Silent p.T108T 0.34 TCGA-B0-5098-01 3 122170886 122170886 G A KPNA1 Missense_Mutation p.A197V 0.15 deleterious(0) probably_damaging(0.999) TCGA-B0-5098-01 3 123044258 123044258 T C ADCY5 Missense_Mutation p.I667V 0.32 tolerated(0.93) benign(0.002) TCGA-B0-5098-01 3 128864606 128864606 C T ISY1 Missense_Mutation p.G100R 0.05 tolerated(0.71) benign(0.001) TCGA-B0-5098-01 3 129546961 129546961 G A TMCC1 Silent p.N87N 0.11 TCGA-B0-5098-01 3 134086562 134086562 G - AMOTL2 Frame_Shift_Del p.P273Lfs*13 0.21 TCGA-B0-5098-01 3 138187722 138187725 GAGT - ESYT3 Splice_Site p.X478_splice 0.24 TCGA-B0-5098-01 3 139062900 139062900 G A MRPS22 Nonsense_Mutation p.W11* 0.36 TCGA-B0-5098-01 3 150908555 150908555 T C MED12L Missense_Mutation p.L602P 0.13 deleterious(0) probably_damaging(0.999) TCGA-B0-5098-01 3 151156202 151156202 T C IGSF10 Silent p.Q2049Q 0.35 TCGA-B0-5098-01 3 154146817 154146817 G A GPR149 Silent p.I196I 0.34 TCGA-B0-5098-01 3 16216674 16216674 C T GALNT15 Nonsense_Mutation p.R6* 0.55 TCGA-B0-5098-01 3 167508322 167508322 A G SERPINI1 Missense_Mutation p.H138R 0.22 tolerated(0.44) benign(0.002) TCGA-B0-5098-01 3 179478997 179478997 C T USP13 Silent p.G682G 0.04 TCGA-B0-5098-01 3 184062584 184062584 C A FAM131A Silent p.P309P 0.23 TCGA-B0-5098-01 3 188590487 188590487 A G LPP Missense_Mutation p.Q549R 0.21 deleterious(0) possibly_damaging(0.648) TCGA-B0-5098-01 3 195969503 195969503 A - PCYT1A Frame_Shift_Del p.F165Lfs*2 0.23 TCGA-B0-5098-01 3 37070363 37070363 A C MLH1 Missense_Mutation p.I500L 0.32 tolerated(0.18) benign(0) TCGA-B0-5098-01 3 37070364 37070365 - CATTAACCTCA MLH1 Frame_Shift_Ins p.S505Lfs*7 0.13 TCGA-B0-5098-01 3 37125271 37125271 T - LRRFIP2 Frame_Shift_Del p.K378Nfs*12 0.41 TCGA-B0-5098-01 3 38050545 38050545 C A PLCD1 Missense_Mutation p.G592C 0.42 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.41 TCGA-B0-5098-01 3 40524165 40524165 G - ZNF619 Frame_Shift_Del p.G130Efs*4 0.39 TCGA-B0-5098-01 3 44844357 44844357 A G KIF15 Missense_Mutation p.R521G 0.58 deleterious(0) probably_damaging(0.999) TCGA-B0-5098-01 3 47155460 47155460 T G SETD2 Missense_Mutation p.N1541H 0.50 deleterious(0) probably_damaging(0.999) TCGA-B0-5098-01 3 47677513 47677513 T C SMARCC1 Silent p.S830S 0.25 TCGA-B0-5098-01 3 49153190 49153190 A G USP19 Silent p.H551H 0.52 TCGA-B0-5098-01 3 49293670 49293670 A C CCDC36 Missense_Mutation p.Q247P 0.07 deleterious(0.01) probably_damaging(0.982) TCGA-B0-5098-01 3 49721844 49721844 A G MST1 Missense_Mutation p.V640A 0.36 deleterious(0) probably_damaging(0.991) TCGA-B0-5098-01 3 50005783 50005783 A T RBM6 Missense_Mutation p.N309Y 0.05 tolerated(0.7) possibly_damaging(0.555) TCGA-B0-5098-01 3 52539137 52539137 C A STAB1 Missense_Mutation p.S499Y 0.27 deleterious(0.04) benign(0.092) TCGA-B0-5098-01 3 67546326 67546326 T C SUCLG2 Missense_Mutation p.I320V 0.60 deleterious(0.02) possibly_damaging(0.64) TCGA-B0-5098-01 3 69047200 69047200 A C EOGT Missense_Mutation p.S265A 0.56 tolerated(0.14) probably_damaging(0.971) TCGA-B0-5098-01 3 69088741 69088741 T - TMF1 Frame_Shift_Del p.V597Lfs*4 0.35 TCGA-B0-5098-01 3 77542422 77542422 T A ROBO2 Missense_Mutation p.I248N 0.53 deleterious(0.03) possibly_damaging(0.639) TCGA-B0-5098-01 3 98072884 98072884 C A OR5K4 Missense_Mutation p.L63M 0.37 deleterious(0) probably_damaging(0.98) TCGA-B0-5098-01 4 122604561 122604561 G T ANXA5 Silent p.P87P 0.43 TCGA-B0-5098-01 4 128842707 128842707 T C MFSD8 Missense_Mutation p.Y441C 0.57 deleterious(0) probably_damaging(0.993) TCGA-B0-5098-01 4 143007357 143007357 G T INPP4B Silent p.L809L 0.32 TCGA-B0-5098-01 4 155508013 155508013 G A FGA Missense_Mutation p.R190C 0.06 deleterious(0.04) probably_damaging(0.958) TCGA-B0-5098-01 4 159092386 159092386 A G FAM198B Silent p.L48L 0.59 TCGA-B0-5098-01 4 159174697 159174697 G A TMEM144 3'UTR 0.52 TCGA-B0-5098-01 4 170625248 170625248 T C CLCN3 Missense_Mutation p.W555R 0.59 tolerated(0.1) possibly_damaging(0.649) TCGA-B0-5098-01 4 185697722 185697722 T C ACSL1 Missense_Mutation p.I224M 0.57 deleterious(0.04) possibly_damaging(0.816) TCGA-B0-5098-01 4 187540370 187540370 A G FAT1 Missense_Mutation p.L2457P 0.53 possibly_damaging(0.612) TCGA-B0-5098-01 4 188924487 188924487 C - ZFP42 Frame_Shift_Del p.I178* 0.12 TCGA-B0-5098-01 4 2955332 2955332 G A NOP14 Missense_Mutation p.T218M 0.50 deleterious(0) probably_damaging(0.953) TCGA-B0-5098-01 4 3015545 3015545 G A GRK4 Missense_Mutation p.S244N 0.04 deleterious(0) probably_damaging(0.983) TCGA-B0-5098-01 4 38775818 38775818 A G TLR10 Missense_Mutation p.L465P 0.52 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 4 39780059 39780059 T C UBE2K 3'UTR 0.62 TCGA-B0-5098-01 4 57182200 57182200 G A KIAA1211 Silent p.P844P 0.56 TCGA-B0-5098-01 4 57898593 57898593 T - IGFBP7 Frame_Shift_Del p.G277Vfs*13 0.42 TCGA-B0-5098-01 4 57898642 57898642 G A IGFBP7 Missense_Mutation p.S260L 0.52 tolerated(0.65) benign(0.238) TCGA-B0-5098-01 4 66231674 66231674 T C EPHA5 Missense_Mutation p.T676A 0.55 tolerated(0.06) benign(0.011) TCGA-B0-5098-01 4 76924625 76924625 A G CXCL9 3'UTR 0.65 TCGA-B0-5098-01 4 8021390 8021390 C T ABLIM2 Missense_Mutation p.V460I 0.60 tolerated(0.46) benign(0.003) TCGA-B0-5098-01 5 112176344 112176345 - A APC Frame_Shift_Ins p.R1687Tfs*13 0.30 TCGA-B0-5098-01 5 113822745 113822745 A G KCNN2 Splice_Site p.X419_splice 0.33 TCGA-B0-5098-01 5 115361951 115361951 A G AQPEP 3'UTR 0.50 TCGA-B0-5098-01 5 131066705 131066706 TT - FNIP1 Frame_Shift_Del p.K82Sfs*20 0.30 TCGA-B0-5098-01 5 131663087 131663087 T - SLC22A4 Frame_Shift_Del p.S315Lfs*5 0.22 TCGA-B0-5098-01 5 132534947 132534947 C - FSTL4 Frame_Shift_Del p.G790Vfs*6 0.36 TCGA-B0-5098-01 5 138456826 138456826 T C SIL1 Missense_Mutation p.T48A 0.33 tolerated(0.82) benign(0.108) TCGA-B0-5098-01 5 139889312 139889312 C - ANKHD1 Frame_Shift_Del p.P1287Lfs*10 0.15 TCGA-B0-5098-01 5 140176930 140176930 T C PCDHA2 Missense_Mutation p.V794A 0.29 tolerated_low_confidence(0.56) benign(0.002) TCGA-B0-5098-01 5 140250117 140250117 T C PCDHA11 Missense_Mutation p.S477P 0.28 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-B0-5098-01 5 140554720 140554720 T A PCDHB7 Silent p.I768I 0.18 TCGA-B0-5098-01 5 140554722 140554722 T A PCDHB7 Missense_Mutation p.I769N 0.17 tolerated_low_confidence(0.06) benign(0.025) TCGA-B0-5098-01 5 140554727 140554727 A C PCDHB7 Missense_Mutation p.N771H 0.18 deleterious_low_confidence(0.01) benign(0.025) TCGA-B0-5098-01 5 140615829 140615829 G A PCDHB18 RNA 0.66 TCGA-B0-5098-01 5 140725001 140725001 A T PCDHGA3 Missense_Mutation p.R467S 0.36 deleterious_low_confidence(0) possibly_damaging(0.626) TCGA-B0-5098-01 5 141357883 141357883 A G RNF14 Missense_Mutation p.K108E 0.31 tolerated(0.15) benign(0.026) TCGA-B0-5098-01 5 14711209 14711209 A - ANKH 3'UTR 0.30 TCGA-B0-5098-01 5 14713040 14713040 G A ANKH Silent p.G436G 0.32 TCGA-B0-5098-01 5 150519732 150519732 T C ANXA6 Missense_Mutation p.T31A 0.24 deleterious(0.04) benign(0.002) TCGA-B0-5098-01 5 150696249 150696249 T C SLC36A2 3'UTR 0.23 TCGA-B0-5098-01 5 151183518 151183518 C T G3BP1 Nonsense_Mutation p.R423* 0.36 TCGA-B0-5098-01 5 151239530 151239530 C A GLRA1 Missense_Mutation p.D98Y 0.29 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 5 154268882 154268882 T C GEMIN5 Missense_Mutation p.K1453R 0.33 deleterious(0.04) probably_damaging(0.998) TCGA-B0-5098-01 5 167654954 167654954 A G TENM2 Missense_Mutation p.Y1780C 0.30 deleterious(0) benign(0.104) TCGA-B0-5098-01 5 169675481 169675481 A G LCP2 3'UTR 0.31 TCGA-B0-5098-01 5 172447338 172447338 A G ATP6V0E1 3'UTR 0.38 TCGA-B0-5098-01 5 173370038 173370038 A G CPEB4 Missense_Mutation p.Y423C 0.34 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-B0-5098-01 5 176868029 176868029 T C GRK6 Missense_Mutation p.L551P 0.29 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 5 177575020 177575020 G A RMND5B Missense_Mutation p.R390H 0.36 tolerated(0.35) benign(0.023) TCGA-B0-5098-01 5 178044364 178044364 T C CLK4 Silent p.G152G 0.28 TCGA-B0-5098-01 5 178139363 178139363 T A ZNF354A Missense_Mutation p.N506Y 0.33 tolerated(0.65) benign(0.039) TCGA-B0-5098-01 5 24488218 24488219 - T CDH10 Frame_Shift_Ins p.E641Rfs*18 0.24 TCGA-B0-5098-01 5 33892061 33892061 A G ADAMTS12 5'UTR 0.27 TCGA-B0-5098-01 5 42801175 42801175 C T SEPP1 Missense_Mutation p.A265T 0.31 tolerated_low_confidence(0.3) benign(0.002) TCGA-B0-5098-01 5 66386058 66386058 A T MAST4 Missense_Mutation p.R278W 0.28 probably_damaging(0.976) TCGA-B0-5098-01 5 74017466 74017466 A - GFM2 3'UTR 0.30 TCGA-B0-5098-01 5 74754945 74754945 C T COL4A3BP Missense_Mutation p.R226H 0.37 deleterious(0) probably_damaging(0.924) TCGA-B0-5098-01 5 77334907 77334907 T - AP3B1 Frame_Shift_Del p.K923Nfs*4 0.32 TCGA-B0-5098-01 5 884146 884146 C T BRD9 Silent p.T291T 0.31 TCGA-B0-5098-01 5 94253679 94253679 C T MCTP1 Splice_Site p.X425_splice 0.32 TCGA-B0-5098-01 5 95226808 95226808 T C ELL2 Missense_Mutation p.Q587R 0.30 deleterious(0.01) benign(0.366) TCGA-B0-5098-01 5 96251400 96251400 T C ERAP2 Missense_Mutation p.L889S 0.15 deleterious(0) probably_damaging(0.997) TCGA-B0-5098-01 5 96350727 96350727 C A LNPEP Silent p.A768A 0.36 TCGA-B0-5098-01 6 108985226 108985226 C T FOXO3 Missense_Mutation p.P397L 0.36 tolerated(0.14) benign(0.011) TCGA-B0-5098-01 6 111688861 111688861 C A REV3L Missense_Mutation p.D2044Y 0.33 deleterious(0.02) possibly_damaging(0.526) TCGA-B0-5098-01 6 111701250 111701250 C T REV3L Missense_Mutation p.M463I 0.28 tolerated(0.22) benign(0.101) TCGA-B0-5098-01 6 119301393 119301393 C T FAM184A Silent p.E737E 0.35 TCGA-B0-5098-01 6 125397823 125397823 A G RNF217 Silent p.E142E 0.30 TCGA-B0-5098-01 6 129937433 129937434 - A ARHGAP18 Frame_Shift_Ins p.C323Lfs*32 0.29 TCGA-B0-5098-01 6 132910127 132910127 A G TAAR5 Silent p.I233I 0.41 TCGA-B0-5098-01 6 137191121 137191121 T C PEX7 Missense_Mutation p.Y243H 0.39 tolerated(0.11) benign(0.232) TCGA-B0-5098-01 6 138584306 138584306 C T KIAA1244 Silent p.V562V 0.11 TCGA-B0-5098-01 6 144508482 144508482 G A STX11 Missense_Mutation p.D240N 0.26 tolerated(0.39) possibly_damaging(0.526) TCGA-B0-5098-01 6 149901120 149901120 A - GINM1 Frame_Shift_Del p.E196Kfs*21 0.12 TCGA-B0-5098-01 6 150690236 150690236 C A IYD Silent p.A23A 0.36 TCGA-B0-5098-01 6 152265601 152265601 A C ESR1 Silent p.R352R 0.07 TCGA-B0-5098-01 6 152542150 152542150 G A SYNE1 Nonsense_Mutation p.Q7230* 0.32 TCGA-B0-5098-01 6 157521896 157521896 G A ARID1B Missense_Mutation p.D1390N 0.04 probably_damaging(0.996) TCGA-B0-5098-01 6 158532468 158532468 T - SERAC1 Frame_Shift_Del p.K632Rfs*17 0.31 TCGA-B0-5098-01 6 160164822 160164822 A G WTAP Missense_Mutation p.T91A 0.32 tolerated(0.68) benign(0.001) TCGA-B0-5098-01 6 160211538 160211538 G A MRPL18 5'UTR 0.28 TCGA-B0-5098-01 6 16328183 16328183 T C ATXN1 Missense_Mutation p.Y120C 0.32 deleterious(0) probably_damaging(0.979) TCGA-B0-5098-01 6 163987695 163987695 T - QKI Intron 0.35 TCGA-B0-5098-01 6 165746425 165746425 C - PDE10A 3'UTR 0.39 TCGA-B0-5098-01 6 20151474 20151475 - A MBOAT1 Frame_Shift_Ins p.V89Cfs*14 0.33 TCGA-B0-5098-01 6 21231246 21231246 T - CDKAL1 Frame_Shift_Del p.F574Lfs*39 0.14 TCGA-B0-5098-01 6 24357601 24357601 G - KAAG1 5'UTR 0.26 TCGA-B0-5098-01 6 24559327 24559327 G A KIAA0319 Missense_Mutation p.A883V 0.14 tolerated(0.47) benign(0.259) TCGA-B0-5098-01 6 26124633 26124633 A G HIST1H2AC Missense_Mutation p.Y58C 0.29 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-B0-5098-01 6 30691481 30691481 T A TUBB Silent p.T214T 0.30 TCGA-B0-5098-01 6 31379868 31379868 G - MICA Frame_Shift_Del p.D255Mfs*131 0.29 TCGA-B0-5098-01 6 31615405 31615405 C T BAG6 Missense_Mutation p.A257T 0.41 tolerated(0.56) benign(0.001) TCGA-B0-5098-01 6 31760034 31760034 G A VARS Silent p.V277V 0.36 TCGA-B0-5098-01 6 31868726 31868726 G A ZBTB12 Silent p.C119C 0.16 TCGA-B0-5098-01 6 32015543 32015543 C T TNXB 5'Flank 0.45 TCGA-B0-5098-01 6 32017812 32017812 G A TNXB 5'Flank 0.24 TCGA-B0-5098-01 6 33744975 33744975 G A LEMD2 Missense_Mutation p.R400W 0.05 deleterious(0) probably_damaging(0.979) TCGA-B0-5098-01 6 37467678 37467678 C A CCDC167 5'UTR 0.31 TCGA-B0-5098-01 6 38652183 38652183 G A GLO1 Missense_Mutation p.A92V 0.24 tolerated(0.42) benign(0.001) TCGA-B0-5098-01 6 41197850 41197850 T C TREML4 Missense_Mutation p.S166P 0.42 tolerated(0.05) benign(0.01) TCGA-B0-5098-01 6 43306339 43306339 G C ZNF318 Silent p.T1799T 0.33 TCGA-B0-5098-01 6 46656745 46656745 G A TDRD6 Missense_Mutation p.G294R 0.30 tolerated_low_confidence(0.11) benign(0.109) TCGA-B0-5098-01 6 50740509 50740509 G T TFAP2D Nonsense_Mutation p.E431* 0.07 TCGA-B0-5098-01 6 53519514 53519514 T - KLHL31 Frame_Shift_Del p.N186Mfs*24 0.33 TCGA-B0-5098-01 6 64395266 64395267 - A PHF3 Frame_Shift_Ins p.Q551Tfs*3 0.30 TCGA-B0-5098-01 6 69949021 69949021 T A BAI3 Missense_Mutation p.I906K 0.36 deleterious(0) probably_damaging(0.998) TCGA-B0-5098-01 6 71162230 71162230 C G FAM135A Nonsense_Mutation p.S38* 0.33 TCGA-B0-5098-01 6 7230314 7230314 A G RREB1 Missense_Mutation p.H661R 0.45 deleterious(0) probably_damaging(0.999) TCGA-B0-5098-01 6 7334269 7334269 T C CAGE1 Silent p.K808K 0.55 TCGA-B0-5098-01 6 7583192 7583192 C A DSP Silent p.I1899I 0.29 TCGA-B0-5098-01 6 76589611 76589611 T C MYO6 Missense_Mutation p.Y718H 0.33 deleterious(0) unknown(0) TCGA-B0-5098-01 6 84302944 84302944 C A SNAP91 Silent p.A577A 0.29 TCGA-B0-5098-01 6 89808195 89808195 T C SRSF12 3'UTR 0.38 TCGA-B0-5098-01 7 100482088 100482090 AAG - SRRT In_Frame_Del p.E288del 0.43 TCGA-B0-5098-01 7 100679747 100679747 A G MUC17 Missense_Mutation p.T1684A 0.34 benign(0.323) TCGA-B0-5098-01 7 107576084 107576084 T C LAMB1 Missense_Mutation p.T1322A 0.36 tolerated(0.62) benign(0.005) TCGA-B0-5098-01 7 112407184 112407185 - A TMEM168 3'UTR 0.34 TCGA-B0-5098-01 7 116557934 116557934 A G CAPZA2 3'UTR 0.13 TCGA-B0-5098-01 7 11676288 11676291 TCTT - THSD7A Frame_Shift_Del p.K163Tfs*72 0.36 TCGA-B0-5098-01 7 130024430 130024430 C T CPA1 Silent p.G250G 0.31 TCGA-B0-5098-01 7 13971309 13971309 C A ETV1 Missense_Mutation p.G207V 0.36 deleterious(0.01) possibly_damaging(0.772) TCGA-B0-5098-01 7 142561951 142561951 C T EPHB6 Silent p.Y131Y 0.35 TCGA-B0-5098-01 7 143956190 143956190 A - OR2A7 Frame_Shift_Del p.C178Vfs*37 0.11 TCGA-B0-5098-01 7 149129497 149129497 C T ZNF777 Silent p.K622K 0.33 TCGA-B0-5098-01 7 149482799 149482799 T C SSPO RNA 0.25 TCGA-B0-5098-01 7 149545507 149545507 G C ZNF862 Missense_Mutation p.E309Q 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.827) TCGA-B0-5098-01 7 150883716 150883716 A G ASB10 Missense_Mutation p.L116P 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-B0-5098-01 7 151859636 151859636 G C KMT2C Missense_Mutation p.L3676V 0.40 benign(0.044) TCGA-B0-5098-01 7 154863209 154863209 C T HTR5A Silent p.Y200Y 0.27 TCGA-B0-5098-01 7 18066798 18066798 T C PRPS1L1 Missense_Mutation p.D203G 0.36 tolerated(0.26) benign(0.006) TCGA-B0-5098-01 7 18705937 18705937 G A HDAC9 Silent p.A523A 0.35 TCGA-B0-5098-01 7 23191797 23191797 A G KLHL7 Missense_Mutation p.Q302R 0.28 tolerated(0.48) benign(0) TCGA-B0-5098-01 7 27203284 27203284 A G HOXA9 Missense_Mutation p.W253R 0.33 deleterious(0) probably_damaging(0.998) TCGA-B0-5098-01 7 30702345 30702345 C T CRHR2 Missense_Mutation p.R248H 0.29 tolerated(0.15) benign(0.003) TCGA-B0-5098-01 7 31829721 31829722 - G PDE1C Intron 0.34 TCGA-B0-5098-01 7 38402598 38402598 T C TRGV2 Missense_Mutation p.K74R 0.17 tolerated(0.38) benign(0.007) TCGA-B0-5098-01 7 38402604 38402604 T G TRGV2 Missense_Mutation p.N72T 0.16 tolerated(0.73) benign(0.002) TCGA-B0-5098-01 7 38402622 38402622 T A TRGV2 Missense_Mutation p.Q66L 0.13 tolerated(1) benign(0) TCGA-B0-5098-01 7 42977150 42977150 G A MRPL32 Missense_Mutation p.R181Q 0.42 deleterious(0) probably_damaging(0.995) TCGA-B0-5098-01 7 43477782 43477782 C T HECW1 Intron 0.25 TCGA-B0-5098-01 7 44113413 44113413 G T POLM Missense_Mutation p.P428H 0.30 deleterious(0.01) benign(0.136) TCGA-B0-5098-01 7 44149825 44149825 A G AEBP1 Missense_Mutation p.D427G 0.33 deleterious(0.01) probably_damaging(0.974) TCGA-B0-5098-01 7 44153558 44153558 A G AEBP1 Missense_Mutation p.T1059A 0.26 tolerated_low_confidence(0.12) benign(0.002) TCGA-B0-5098-01 7 63529332 63529332 T C ZNF727 Missense_Mutation p.S23P 0.35 tolerated(0.48) possibly_damaging(0.693) TCGA-B0-5098-01 7 6731351 6731351 G C ZNF12 Missense_Mutation p.L408V 0.23 tolerated(0.16) probably_damaging(0.999) TCGA-B0-5098-01 7 73246063 73246063 G - CLDN4 Frame_Shift_Del p.L180Cfs*115 0.31 TCGA-B0-5098-01 7 86468878 86468878 T C GRM3 Missense_Mutation p.I683T 0.37 tolerated(0.13) probably_damaging(0.938) TCGA-B0-5098-01 7 86542277 86542277 G T KIAA1324L Missense_Mutation p.P659T 0.35 deleterious(0) probably_damaging(0.982) TCGA-B0-5098-01 7 86825931 86825931 A G TMEM243 3'UTR 0.24 TCGA-B0-5098-01 7 94539704 94539704 T C PPP1R9A Silent p.H93H 0.39 TCGA-B0-5098-01 7 99717401 99717402 - T CNPY4 Frame_Shift_Ins p.L14Ffs*17 0.23 TCGA-B0-5098-01 8 101299911 101299911 C T RNF19A Silent p.R164R 0.29 TCGA-B0-5098-01 8 105367351 105367351 A - DCSTAMP Frame_Shift_Del p.R428Dfs*13 0.28 TCGA-B0-5098-01 8 106646501 106646501 C T ZFPM2 Silent p.L150L 0.34 TCGA-B0-5098-01 8 109482097 109482097 A - EMC2 Frame_Shift_Del p.N137Mfs*8 0.17 TCGA-B0-5098-01 8 113504781 113504782 GT - CSMD3 Frame_Shift_Del p.L1739Hfs*7 0.26 TCGA-B0-5098-01 8 119122871 119122871 C A EXT1 Nonsense_Mutation p.E139* 0.37 TCGA-B0-5098-01 8 121216054 121216054 G C COL14A1 Missense_Mutation p.E328D 0.33 tolerated(0.73) benign(0.047) TCGA-B0-5098-01 8 12592895 12592900 GGCTCA - LONRF1 In_Frame_Del p.F487_P489delinsL 0.55 TCGA-B0-5098-01 8 13356895 13356895 G A DLC1 Missense_Mutation p.A229V 0.09 tolerated_low_confidence(0.22) benign(0.098) TCGA-B0-5098-01 8 139729066 139729066 A G COL22A1 Splice_Site p.X800_splice 0.34 TCGA-B0-5098-01 8 144941154 144941154 G A EPPK1 Missense_Mutation p.R2090W 0.05 benign(0.332) TCGA-B0-5098-01 8 144992015 144992015 G A PLEC Missense_Mutation p.R4129C 0.32 probably_damaging(0.997) TCGA-B0-5098-01 8 145246743 145246745 CTT - MROH1 In_Frame_Del p.F281del 0.33 TCGA-B0-5098-01 8 17885195 17885196 CT - PCM1 3'UTR 0.29 TCGA-B0-5098-01 8 19363023 19363023 A G CSGALNACT1 Missense_Mutation p.L108P 0.38 tolerated(0.22) benign(0.001) TCGA-B0-5098-01 8 2005806 2005806 C A MYOM2 Silent p.I156I 0.37 TCGA-B0-5098-01 8 2077161 2077161 A G MYOM2 Missense_Mutation p.I1247M 0.30 deleterious(0.01) benign(0.067) TCGA-B0-5098-01 8 22078925 22078925 T C PHYHIP Missense_Mutation p.T312A 0.29 deleterious(0.02) possibly_damaging(0.88) TCGA-B0-5098-01 8 22865538 22865538 A G RHOBTB2 Missense_Mutation p.S534G 0.06 tolerated(0.25) benign(0.02) TCGA-B0-5098-01 8 28967545 28967545 C T KIF13B Missense_Mutation p.A1325T 0.36 deleterious(0) probably_damaging(0.994) TCGA-B0-5098-01 8 30701622 30701622 T C TEX15 Missense_Mutation p.K1638E 0.05 tolerated(0.2) benign(0.096) TCGA-B0-5098-01 8 3855604 3855604 G A CSMD1 Silent p.R213R 0.29 TCGA-B0-5098-01 8 38848862 38848862 T C TM2D2 Missense_Mutation p.T212A 0.49 tolerated(0.17) possibly_damaging(0.554) TCGA-B0-5098-01 8 42040264 42040264 A G PLAT Missense_Mutation p.L259P 0.34 deleterious(0.03) probably_damaging(0.988) TCGA-B0-5098-01 8 53030917 53030917 A G ST18 Missense_Mutation p.M947T 0.29 deleterious(0) probably_damaging(0.997) TCGA-B0-5098-01 8 56436132 56436132 C T XKR4 Silent p.F433F 0.05 TCGA-B0-5098-01 8 56675151 56675151 C T TMEM68 Intron 0.37 TCGA-B0-5098-01 8 77617102 77617102 T C ZFHX4 Missense_Mutation p.V260A 0.34 benign(0.294) TCGA-B0-5098-01 8 81897572 81897572 G A PAG1 Silent p.Y105Y 0.36 TCGA-B0-5098-01 8 90784903 90784903 A G RIPK2 Missense_Mutation p.N234D 0.36 deleterious(0.04) probably_damaging(0.977) TCGA-B0-5098-01 8 92378916 92378916 T C SLC26A7 Missense_Mutation p.C533R 0.32 tolerated(0.65) benign(0.047) TCGA-B0-5098-01 8 94745931 94745931 A G RBM12B Missense_Mutation p.M903T 0.37 tolerated(0.14) benign(0.003) TCGA-B0-5098-01 8 99217418 99217418 T C NIPAL2 Missense_Mutation p.M238V 0.34 tolerated(0.21) benign(0.033) TCGA-B0-5098-01 9 108536277 108536277 C A TMEM38B Silent p.S264S 0.55 TCGA-B0-5098-01 9 109734321 109734321 C T ZNF462 Nonsense_Mutation p.Q2155* 0.06 TCGA-B0-5098-01 9 116823355 116823355 G A AMBP Missense_Mutation p.R293W 0.44 deleterious(0) possibly_damaging(0.604) TCGA-B0-5098-01 9 117848833 117848833 C A TNC Nonsense_Mutation p.E393* 0.51 TCGA-B0-5098-01 9 127298227 127298227 T C NR6A1 Missense_Mutation p.S337G 0.10 tolerated(0.49) benign(0.338) TCGA-B0-5098-01 9 130579468 130579468 A G ENG Silent p.T567T 0.41 TCGA-B0-5098-01 9 131482247 131482247 C - PKN3 Frame_Shift_Del p.Y778Tfs*82 0.21 TCGA-B0-5098-01 9 132897302 132897302 A G GPR107 Splice_Site p.X569_splice 0.50 TCGA-B0-5098-01 9 136255356 136255356 T C C9orf96 Missense_Mutation p.L148P 0.46 deleterious(0) probably_damaging(0.981) TCGA-B0-5098-01 9 140243598 140243598 G A EXD3 Silent p.G598G 0.50 TCGA-B0-5098-01 9 140327515 140327516 CT - NOXA1 Frame_Shift_Del p.S282Pfs*15 0.63 TCGA-B0-5098-01 9 17787382 17787382 A G SH3GL2 Silent p.P112P 0.47 TCGA-B0-5098-01 9 21201942 21201942 G T IFNA7 Missense_Mutation p.Q75K 0.54 deleterious(0.01) probably_damaging(0.987) TCGA-B0-5098-01 9 21201943 21201943 A T IFNA7 Silent p.T74T 0.55 TCGA-B0-5098-01 9 27183560 27183560 T C TEK Silent p.P378P 0.51 TCGA-B0-5098-01 9 33264251 33264251 G A BAG1 Missense_Mutation p.A141V 0.43 tolerated(0.09) benign(0.156) TCGA-B0-5098-01 9 34257489 34257489 C T KIF24 Missense_Mutation p.V706M 0.47 deleterious(0) possibly_damaging(0.863) TCGA-B0-5098-01 9 35090187 35090187 G A PIGO Missense_Mutation p.A982V 0.07 tolerated(0.12) benign(0.005) TCGA-B0-5098-01 9 35714321 35714321 T G TLN1 Missense_Mutation p.Q1012P 0.67 tolerated(0.32) benign(0.019) TCGA-B0-5098-01 9 5811273 5811273 C T ERMP1 Missense_Mutation p.A389T 0.47 tolerated(0.06) benign(0.004) TCGA-B0-5098-01 9 88207490 88207490 C T AGTPBP1 Silent p.T811T 0.23 TCGA-B0-5098-01 9 88631578 88631578 A - NAA35 Frame_Shift_Del p.K567Rfs*6 0.38 TCGA-B0-5098-01 9 96051602 96051602 C T WNK2 Silent p.T1559T 0.80 TCGA-B0-5098-01 X 107381402 107381402 T G ATG4A Nonsense_Mutation p.Y265* 0.52 TCGA-B0-5098-01 X 108631735 108631735 C A GUCY2F Missense_Mutation p.R980L 0.51 deleterious(0) benign(0.122) TCGA-B0-5098-01 X 108912280 108912280 A G ACSL4 Silent p.D416D 0.55 TCGA-B0-5098-01 X 119249701 119249701 T C RHOXF1 Silent p.T24T 0.57 TCGA-B0-5098-01 X 119509328 119509328 T G ATP1B4 Missense_Mutation p.F222V 0.54 deleterious(0) probably_damaging(1) TCGA-B0-5098-01 X 129173135 129173135 A G BCORL1 Missense_Mutation p.N1499S 0.46 possibly_damaging(0.463) TCGA-B0-5098-01 X 135431755 135431755 A G GPR112 Missense_Mutation p.I1964V 0.57 tolerated(0.29) benign(0.005) TCGA-B0-5098-01 X 150780186 150780186 T C PASD1 Silent p.C56C 0.13 TCGA-B0-5098-01 X 151821591 151821591 C - GABRQ Frame_Shift_Del p.P584Qfs*109 0.34 TCGA-B0-5098-01 X 153059774 153059774 A G IDH3G Missense_Mutation p.L3P 0.53 deleterious_low_confidence(0) benign(0.131) TCGA-B0-5098-01 X 153662708 153662708 A G ATP6AP1 Missense_Mutation p.D280G 0.62 tolerated(1) benign(0.002) TCGA-B0-5098-01 X 154158320 154158320 G A F8 Silent p.L1249L 0.28 TCGA-B0-5098-01 X 154344352 154344353 - A BRCC3 Frame_Shift_Ins p.I216Nfs*15 0.41 TCGA-B0-5098-01 X 3235384 3235384 G A MXRA5 Missense_Mutation p.A2113V 0.48 deleterious(0.02) possibly_damaging(0.679) TCGA-B0-5098-01 X 38145101 38145101 C - RPGR Frame_Shift_Del p.E1051Kfs*38 0.43 TCGA-B0-5098-01 X 46913820 46913820 A G JADE3 Silent p.V411V 0.64 TCGA-B0-5098-01 X 49071830 49071830 T C CACNA1F Missense_Mutation p.Y1148C 0.09 deleterious(0) possibly_damaging(0.707) TCGA-B0-5098-01 X 70465236 70465236 T C ZMYM3 Missense_Mutation p.N987S 0.58 tolerated(0.05) benign(0.235) TCGA-B0-5098-01 X 73069443 73069443 G A XIST RNA 0.56 TCGA-B0-5098-01 X 74520734 74520734 G A UPRT Missense_Mutation p.V253I 0.17 deleterious(0.02) probably_damaging(0.94) TCGA-B0-5098-01 X 77084688 77084688 T A MAGT1 3'UTR 0.51 TCGA-B0-5099-01 10 50690813 50690813 A G ERCC6 Silent p.L697L 0.31 TCGA-B0-5099-01 11 122930262 122930262 G A HSPA8 Nonsense_Mutation p.Q347* 0.31 TCGA-B0-5099-01 11 122930264 122930264 A T HSPA8 Missense_Mutation p.I346N 0.33 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-B0-5099-01 11 129728494 129728494 G A TMEM45B Missense_Mutation p.G248R 0.44 tolerated(0.6) benign(0.003) TCGA-B0-5099-01 11 60709539 60709539 C T SLC15A3 Missense_Mutation p.V359M 0.28 tolerated(0.37) benign(0.012) TCGA-B0-5099-01 11 65270626 65270626 C T MALAT1 RNA 0.38 TCGA-B0-5099-01 11 6640675 6640686 GCTCTATATTCC - TPP1 5'UTR 0.28 TCGA-B0-5099-01 12 125462030 125462030 G A DHX37 Missense_Mutation p.R249W 0.20 deleterious(0) probably_damaging(1) TCGA-B0-5099-01 12 78400974 78400974 G T NAV3 Missense_Mutation p.E552D 0.32 tolerated(0.15) benign(0.007) TCGA-B0-5099-01 12 9248168 9248168 A T A2M Missense_Mutation p.S660R 0.31 tolerated(0.66) benign(0.002) TCGA-B0-5099-01 13 95271760 95271762 GTT - GPR180 In_Frame_Del p.S242_L243delinsM 0.37 TCGA-B0-5099-01 14 105414746 105414746 C T AHNAK2 Missense_Mutation p.V2348M 0.35 benign(0.02) TCGA-B0-5099-01 14 24635394 24635394 T C IRF9 Missense_Mutation p.S391P 0.24 tolerated(0.29) benign(0.007) TCGA-B0-5099-01 15 39882824 39882824 G T THBS1 Missense_Mutation p.R751S 0.27 tolerated(0.15) benign(0.155) TCGA-B0-5099-01 15 44085976 44085976 G C SERF2 Missense_Mutation p.V107L 0.35 deleterious_low_confidence(0) benign(0.097) TCGA-B0-5099-01 15 49284863 49284863 C T SECISBP2L Missense_Mutation p.G962S 0.31 deleterious(0) probably_damaging(1) TCGA-B0-5099-01 15 49284864 49284864 A C SECISBP2L Silent p.T961T 0.31 TCGA-B0-5099-01 15 73575304 73575304 G A NEO1 Splice_Site p.X1088_splice 0.35 TCGA-B0-5099-01 16 58572759 58572763 GTAGC - CNOT1 Frame_Shift_Del p.R1683Qfs*32 0.41 TCGA-B0-5099-01 17 27228249 27228249 A - DHRS13 Frame_Shift_Del p.L148Cfs*2 0.38 TCGA-B0-5099-01 17 28846964 28846964 A G GOSR1 Missense_Mutation p.M185V 0.40 tolerated(0.2) benign(0.091) TCGA-B0-5099-01 17 33932800 33932800 A T AP2B1 Missense_Mutation p.M74L 0.39 deleterious(0.01) benign(0.059) TCGA-B0-5099-01 17 39845179 39845179 C T EIF1 5'UTR 0.59 TCGA-B0-5099-01 17 62750126 62750126 A G hsa-mir-6080 RNA 0.43 TCGA-B0-5099-01 18 18586538 18586538 T A ROCK1 Missense_Mutation p.L553F 0.37 tolerated(0.07) possibly_damaging(0.56) TCGA-B0-5099-01 18 70502440 70502440 T C NETO1 Intron 0.29 TCGA-B0-5099-01 19 35540222 35540222 A G HPN Silent p.R15R 0.39 TCGA-B0-5099-01 19 4446542 4446542 A C UBXN6 Missense_Mutation p.F292C 0.37 deleterious(0) probably_damaging(0.996) TCGA-B0-5099-01 19 4891119 4891119 G A ARRDC5 Missense_Mutation p.S323F 0.13 deleterious(0) benign(0.444) TCGA-B0-5099-01 19 55748092 55748092 C T PPP6R1 Missense_Mutation p.G636E 0.17 tolerated(0.17) benign(0.23) TCGA-B0-5099-01 1 100575995 100575995 A G SASS6 Silent p.D238D 0.36 TCGA-B0-5099-01 1 118475936 118475936 T A WDR3 5'UTR 0.37 TCGA-B0-5099-01 1 154309919 154309919 G A ATP8B2 Silent p.P344P 0.02 TCGA-B0-5099-01 1 159161760 159161760 G A CADM3 Silent p.V75V 0.35 TCGA-B0-5099-01 1 160385972 160385972 G C VANGL2 Silent p.R64R 0.33 TCGA-B0-5099-01 1 186281526 186281526 A C TPR 3'UTR 0.18 TCGA-B0-5099-01 1 186281553 186281553 A C TPR 3'UTR 0.22 TCGA-B0-5099-01 1 214825173 214825173 C T CENPF Missense_Mutation p.R2702W 0.39 benign(0.189) TCGA-B0-5099-01 1 236711354 236711354 A C LGALS8 Missense_Mutation p.N325H 0.29 deleterious(0) probably_damaging(0.998) TCGA-B0-5099-01 1 46726269 46726269 C - RAD54L Frame_Shift_Del p.P155Lfs*7 0.33 TCGA-B0-5099-01 1 75172631 75172631 C T CRYZ Missense_Mutation p.M260I 0.12 tolerated(0.05) benign(0.144) TCGA-B0-5099-01 20 60499473 60499473 C A CDH4 Missense_Mutation p.D570E 0.33 deleterious(0.01) benign(0.25) TCGA-B0-5099-01 21 15755454 15755454 A C HSPA13 5'UTR 0.39 TCGA-B0-5099-01 22 42807545 42807546 - C NFAM1 Frame_Shift_Ins p.N107Efs*131 0.45 TCGA-B0-5099-01 22 43625097 43625097 G A SCUBE1 Silent p.Y355Y 0.10 TCGA-B0-5099-01 2 167060645 167060645 T - SCN9A Frame_Shift_Del p.M1521* 0.21 TCGA-B0-5099-01 2 207174437 207174437 C T ZDBF2 Missense_Mutation p.R1729C 0.07 tolerated(0.18) benign(0.05) TCGA-B0-5099-01 2 44001213 44001213 C T DYNC2LI1 5'UTR 0.35 TCGA-B0-5099-01 2 55570817 55570817 C G CCDC88A Missense_Mutation p.E434Q 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-B0-5099-01 2 74589231 74589231 C - DCTN1 Frame_Shift_Del p.G1216Efs*33 0.21 TCGA-B0-5099-01 3 10191482 10191482 A - VHL Frame_Shift_Del p.E160Sfs*10 0.37 TCGA-B0-5099-01 3 52960072 52960072 G C SFMBT1 Missense_Mutation p.A369G 0.46 tolerated(0.06) possibly_damaging(0.81) TCGA-B0-5099-01 3 52960073 52960073 C T SFMBT1 Missense_Mutation p.A369T 0.46 deleterious(0.01) benign(0.16) TCGA-B0-5099-01 4 106395063 106395063 G A PPA2 Missense_Mutation p.R49C 0.22 deleterious(0.01) benign(0.011) TCGA-B0-5099-01 4 106848531 106848531 G A NPNT Missense_Mutation p.G71R 0.24 deleterious(0) benign(0.327) TCGA-B0-5099-01 4 123542048 123542048 C T IL21 Missense_Mutation p.R40H 0.30 deleterious(0.04) benign(0.03) TCGA-B0-5099-01 4 69204039 69204039 T C YTHDC1 Missense_Mutation p.Y31C 0.33 tolerated_low_confidence(0.26) unknown(0) TCGA-B0-5099-01 4 84382418 84382418 A G MRPS18C 3'UTR 0.31 TCGA-B0-5099-01 5 114620509 114620509 G A CCDC112 Missense_Mutation p.R72C 0.30 deleterious(0.01) benign(0.344) TCGA-B0-5099-01 5 130764648 130764648 T G CTC-432M15.3 Missense_Mutation p.Q1626P 0.12 deleterious_low_confidence(0.04) benign(0.078) TCGA-B0-5099-01 5 131543565 131543565 G A P4HA2 Nonsense_Mutation p.Q306* 0.14 TCGA-B0-5099-01 5 134294744 134294744 G T PCBD2 Missense_Mutation p.M77I 0.43 deleterious(0.03) probably_damaging(0.91) TCGA-B0-5099-01 5 145477733 145477733 C T PLAC8L1 Missense_Mutation p.R81K 0.47 tolerated(0.58) benign(0.026) TCGA-B0-5099-01 5 180420008 180420008 G A BTNL3 Missense_Mutation p.R82Q 0.34 tolerated(0.76) benign(0.025) TCGA-B0-5099-01 5 34757614 34757614 C G RAI14 Silent p.A29A 0.37 TCGA-B0-5099-01 5 34915840 34915840 C T RAD1 5'UTR 0.36 TCGA-B0-5099-01 5 6312623 6312623 A G CTD-2324F15.2 RNA 0.13 TCGA-B0-5099-01 5 76376388 76376388 A G ZBED3 Intron 0.08 TCGA-B0-5099-01 6 146351323 146351324 - A GRM1 Nonsense_Mutation p.W224* 0.27 TCGA-B0-5099-01 6 160526024 160526024 G - IGF2R Frame_Shift_Del p.K2463Sfs*10 0.27 TCGA-B0-5099-01 6 31697051 31697051 C A DDAH2 5'UTR 0.39 TCGA-B0-5099-01 6 31697052 31697052 A T DDAH2 5'UTR 0.39 TCGA-B0-5099-01 6 35426171 35426171 G A FANCE Missense_Mutation p.S356N 0.34 deleterious(0) probably_damaging(0.998) TCGA-B0-5099-01 6 44219603 44219604 - C HSP90AB1 Frame_Shift_Ins p.I483Hfs*7 0.27 TCGA-B0-5099-01 7 130042593 130042593 T C CEP41 Missense_Mutation p.K157R 0.18 deleterious(0.05) benign(0.006) TCGA-B0-5099-01 7 151877175 151877175 G A KMT2C Nonsense_Mutation p.Q2396* 0.18 TCGA-B0-5099-01 7 82764131 82764131 A T PCLO Missense_Mutation p.I912N 0.07 unknown(0) TCGA-B0-5099-01 8 145699579 145699579 G T KIFC2 3'UTR 0.39 TCGA-B0-5099-01 8 19687916 19687916 G C INTS10 Splice_Site p.X381_splice 0.27 TCGA-B0-5099-01 8 30889951 30889958 CTTCAGCT - PURG Frame_Shift_Del p.E114Gfs*65 0.40 TCGA-B0-5099-01 8 41836218 41836218 G A KAT6A Missense_Mutation p.R329W 0.20 probably_damaging(1) TCGA-B0-5099-01 9 104316360 104316360 G T RNF20 Missense_Mutation p.M664I 0.37 deleterious(0.01) benign(0.164) TCGA-B0-5099-01 9 32408576 32408576 C A ACO1 Missense_Mutation p.P111T 0.18 deleterious(0) probably_damaging(0.981) TCGA-B0-5099-01 9 32630843 32630843 G T TAF1L Missense_Mutation p.H1579N 0.28 deleterious(0.04) benign(0.383) TCGA-B0-5099-01 9 32630844 32630844 C G TAF1L Missense_Mutation p.K1578N 0.27 tolerated(0.28) probably_damaging(0.976) TCGA-B0-5099-01 9 79117316 79117316 C T GCNT1 Nonsense_Mutation p.R7* 0.12 TCGA-B0-5099-01 9 95272275 95272275 A C ECM2 Missense_Mutation p.N404K 0.37 tolerated(0.93) benign(0.002) TCGA-B0-5099-01 X 10176319 10176319 C T CLCN4 Missense_Mutation p.R360C 0.32 deleterious(0) probably_damaging(0.999) TCGA-B0-5099-01 X 132160271 132160271 A G USP26 Missense_Mutation p.Y660H 0.39 tolerated(0.53) benign(0.043) TCGA-B0-5099-01 X 13727344 13727344 A T RAB9A Missense_Mutation p.N160I 0.05 deleterious(0) probably_damaging(0.995) TCGA-B0-5099-01 X 18348707 18348707 C G SCML2 Missense_Mutation p.D31H 0.06 deleterious(0.02) possibly_damaging(0.522) TCGA-B0-5099-01 X 47485783 47485783 C T CFP Missense_Mutation p.R359Q 0.16 tolerated(0.11) probably_damaging(0.953) TCGA-B0-5099-01 X 77529262 77529262 G C CYSLTR1 5'UTR 0.34 TCGA-B0-5100-01 10 12071445 12071445 G A UPF2 Silent p.N148N 0.12 TCGA-B0-5100-01 10 127526903 127526903 C T DHX32 Silent p.Q645Q 0.06 TCGA-B0-5100-01 10 96291127 96291127 A G TBC1D12 Silent p.L723L 0.32 TCGA-B0-5100-01 11 5537739 5537739 T C UBQLNL 5'UTR 0.31 TCGA-B0-5100-01 11 82878246 82878246 T C PCF11 Missense_Mutation p.S633P 0.32 tolerated(0.09) probably_damaging(0.972) TCGA-B0-5100-01 12 47629507 47629507 G A PCED1B Missense_Mutation p.A221T 0.43 tolerated(0.06) benign(0.072) TCGA-B0-5100-01 12 49522556 49522567 CAGCTGTGGAAA AG TUBA1B Frame_Shift_Del p.V177Afs*2 0.17 TCGA-B0-5100-01 12 70723321 70723321 G T CNOT2 Missense_Mutation p.M119I 0.15 tolerated_low_confidence(0.3) benign(0) TCGA-B0-5100-01 13 61986058 61986058 G A PCDH20 Missense_Mutation p.T725I 0.35 tolerated(0.35) benign(0.019) TCGA-B0-5100-01 14 53339598 53339598 T A FERMT2 Missense_Mutation p.T398S 0.27 tolerated(0.16) benign(0.001) TCGA-B0-5100-01 14 76964809 76964809 G A ESRRB Intron 0.08 TCGA-B0-5100-01 15 74636237 74636237 A G CYP11A1 Missense_Mutation p.F241S 0.35 deleterious(0) probably_damaging(1) TCGA-B0-5100-01 16 4405287 4405287 C A CORO7 Missense_Mutation p.W924C 0.41 deleterious(0) probably_damaging(0.999) TCGA-B0-5100-01 17 39334330 39334330 G T KRTAP4-2 Silent p.T29T 0.35 TCGA-B0-5100-01 19 38949888 38949888 G A RYR1 Missense_Mutation p.R757H 0.19 probably_damaging(0.978) TCGA-B0-5100-01 1 11188177 11188177 T A MTOR Missense_Mutation p.I1973F 0.16 deleterious(0) probably_damaging(0.986) TCGA-B0-5100-01 1 159557958 159557958 G A APCS Silent p.P44P 0.33 TCGA-B0-5100-01 1 237947421 237947421 G A RYR2 Missense_Mutation p.E4137K 0.43 probably_damaging(0.992) TCGA-B0-5100-01 1 247586613 247586613 A G NLRP3 Missense_Mutation p.E122G 0.32 tolerated(0.98) benign(0) TCGA-B0-5100-01 1 70712550 70712550 A G SRSF11 Missense_Mutation p.K328E 0.37 deleterious(0) unknown(0) TCGA-B0-5100-01 20 17462428 17462428 G A PCSK2 Missense_Mutation p.D544N 0.33 tolerated(0.24) probably_damaging(1) TCGA-B0-5100-01 2 179397153 179397153 G A TTN Missense_Mutation p.T34730I 0.25 TCGA-B0-5100-01 2 180308134 180308134 G C ZNF385B Missense_Mutation p.P420R 0.32 deleterious(0) possibly_damaging(0.527) TCGA-B0-5100-01 2 228173652 228173652 G A COL4A3 Missense_Mutation p.M1500I 0.21 unknown(0) TCGA-B0-5100-01 3 112054820 112054820 C T CD200 Missense_Mutation p.L15F 0.28 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-B0-5100-01 3 186947662 186947662 G A MASP1 3'Flank 0.24 TCGA-B0-5100-01 3 51198060 51198060 C T DOCK3 Silent p.L322L 0.23 TCGA-B0-5100-01 5 133747410 133747410 G A CDKN2AIPNL Missense_Mutation p.R46C 0.31 deleterious(0.02) probably_damaging(0.947) TCGA-B0-5100-01 5 133747411 133747411 C A CDKN2AIPNL Silent p.L45L 0.31 TCGA-B0-5100-01 5 140563511 140563511 C T PCDHB16 Silent p.F459F 0.42 TCGA-B0-5100-01 5 7626320 7626320 C T ADCY2 Missense_Mutation p.A204V 0.33 tolerated(1) benign(0.017) TCGA-B0-5100-01 6 161530934 161530934 C T MAP3K4 Missense_Mutation p.R1462C 0.30 deleterious(0) probably_damaging(1) TCGA-B0-5100-01 6 30593435 30593435 T C MRPS18B Missense_Mutation p.L213P 0.33 deleterious(0) probably_damaging(0.979) TCGA-B0-5100-01 7 100867049 100867049 A T ZNHIT1 Silent p.P123P 0.26 TCGA-B0-5100-01 7 150698930 150698930 G A NOS3 Silent p.S508S 0.32 TCGA-B0-5100-01 7 98639741 98639741 G C SMURF1 Silent p.P483P 0.36 TCGA-B0-5100-01 8 35631934 35631934 G A UNC5D Missense_Mutation p.D866N 0.44 deleterious(0) probably_damaging(0.987) TCGA-B0-5100-01 X 56310908 56310908 G A KLF8 Missense_Mutation p.R354H 0.20 deleterious(0) unknown(0) TCGA-B0-5102-01 11 4510760 4510760 G A OR52K1 Silent p.V210V 0.20 TCGA-B0-5102-01 11 5221093 5221093 C T OR51V1 Missense_Mutation p.V280M 0.47 tolerated(0.08) benign(0.072) TCGA-B0-5102-01 12 110720427 110720427 G C ATP2A2 Splice_Site p.X46_splice 0.41 TCGA-B0-5102-01 13 67800364 67800364 G A PCDH9 Silent p.L737L 0.26 TCGA-B0-5102-01 14 106471633 106471633 T G IGHV1-3 Intron 0.21 TCGA-B0-5102-01 14 51224783 51224783 C T NIN Missense_Mutation p.A989T 0.44 tolerated(0.09) benign(0.034) TCGA-B0-5102-01 14 65289684 65289684 G A SPTB Silent p.S43S 0.26 TCGA-B0-5102-01 14 75513873 75513873 T G MLH3 Missense_Mutation p.K829T 0.21 tolerated(0.09) benign(0.022) TCGA-B0-5102-01 15 45398798 45398798 G A DUOX2 Nonsense_Mutation p.R625* 0.22 TCGA-B0-5102-01 15 69238414 69238414 G C SPESP1 Missense_Mutation p.V181L 0.25 tolerated(0.36) benign(0.011) TCGA-B0-5102-01 15 90321551 90321551 G A MESP2 Missense_Mutation p.G394S 0.06 tolerated_low_confidence(0.13) benign(0.008) TCGA-B0-5102-01 16 1557029 1557029 A G TELO2 Missense_Mutation p.M735V 0.38 deleterious(0.01) possibly_damaging(0.574) TCGA-B0-5102-01 16 15706525 15706525 G C KIAA0430 Missense_Mutation p.I1121M 0.38 tolerated(0.17) benign(0.05) TCGA-B0-5102-01 16 50383993 50383994 - AC BRD7 Frame_Shift_Ins p.F178Vfs*5 0.25 TCGA-B0-5102-01 16 70884503 70884503 A G HYDIN Silent p.L4167L 0.33 TCGA-B0-5102-01 17 8793400 8793400 G A PIK3R5 Missense_Mutation p.A234V 0.38 tolerated(0.13) benign(0.012) TCGA-B0-5102-01 19 48517560 48517560 G T ELSPBP1 Missense_Mutation p.S68I 0.38 tolerated(0.22) benign(0) TCGA-B0-5102-01 1 101200121 101200121 T G VCAM1 Missense_Mutation p.V619G 0.69 deleterious(0) probably_damaging(1) TCGA-B0-5102-01 1 207700214 207700214 G C CR1 Missense_Mutation p.A335P 0.54 tolerated(0.16) probably_damaging(0.911) TCGA-B0-5102-01 1 27087419 27087420 GG - ARID1A Frame_Shift_Del p.G665Dfs*10 0.47 TCGA-B0-5102-01 1 28802704 28802704 C T PHACTR4 Missense_Mutation p.P513S 0.09 deleterious(0.03) probably_damaging(0.99) TCGA-B0-5102-01 1 9642417 9642417 C T SLC25A33 Missense_Mutation p.A275V 0.65 deleterious(0.03) possibly_damaging(0.856) TCGA-B0-5102-01 2 152529113 152529113 G T NEB Missense_Mutation p.H1357N 0.50 probably_damaging(0.995) TCGA-B0-5102-01 3 10183725 10183725 C A VHL Nonsense_Mutation p.S65* 0.73 TCGA-B0-5102-01 3 164905805 164905805 C G SLITRK3 Silent p.S938S 0.35 TCGA-B0-5102-01 3 167508254 167508254 A C SERPINI1 Missense_Mutation p.Q115H 0.30 deleterious(0) probably_damaging(1) TCGA-B0-5102-01 3 185252677 185252677 A C LIPH Missense_Mutation p.V98G 0.05 tolerated(0.38) benign(0.033) TCGA-B0-5102-01 4 122682726 122682726 A - TMEM155 Frame_Shift_Del p.L60Wfs*42 0.24 TCGA-B0-5102-01 4 153332528 153332528 A T FBXW7 Missense_Mutation p.V143D 0.31 deleterious_low_confidence(0) unknown(0) TCGA-B0-5102-01 4 184585186 184585186 C T TRAPPC11 Missense_Mutation p.L56F 0.46 deleterious(0.04) possibly_damaging(0.587) TCGA-B0-5102-01 5 125891622 125891622 C T ALDH7A1 Splice_Site p.X365_splice 0.45 TCGA-B0-5102-01 5 140202183 140202183 G T PCDHA5 Nonsense_Mutation p.E275* 0.27 TCGA-B0-5102-01 5 140347848 140347848 G A PCDHAC2 Silent p.K499K 0.10 TCGA-B0-5102-01 5 140573503 140573503 G T PCDHB10 Missense_Mutation p.V460F 0.21 deleterious_low_confidence(0) possibly_damaging(0.514) TCGA-B0-5102-01 5 140573506 140573506 C T PCDHB10 Missense_Mutation p.R461C 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-B0-5102-01 6 22569747 22569747 C T HDGFL1 5'Flank 0.41 TCGA-B0-5102-01 6 31867889 31867889 C A ZBTB12 Missense_Mutation p.Q398H 0.50 deleterious(0) possibly_damaging(0.522) TCGA-B0-5102-01 6 44141055 44141055 C A CAPN11 Missense_Mutation p.P255T 0.47 deleterious(0) possibly_damaging(0.902) TCGA-B0-5102-01 6 76421100 76421100 A T SENP6 Silent p.G959G 0.35 TCGA-B0-5102-01 7 127252007 127252007 A - PAX4 Frame_Shift_Del p.S247Lfs*37 0.25 TCGA-B0-5102-01 7 129916502 129916502 C T CPA2 Missense_Mutation p.T207I 0.35 deleterious(0.01) probably_damaging(0.965) TCGA-B0-5102-01 7 62752706 62752706 G A ZNF733P RNA 0.14 TCGA-B0-5102-01 8 118184908 118184909 CC - SLC30A8 Frame_Shift_Del p.P367Lfs*2 0.33 TCGA-B0-5102-01 8 27466547 27466547 C T CLU Missense_Mutation p.G52R 0.48 deleterious(0) probably_damaging(0.988) TCGA-B0-5102-01 8 77776353 77776353 C T ZFHX4 Missense_Mutation p.S3468L 0.27 probably_damaging(0.974) TCGA-B0-5102-01 8 95183159 95183159 G T CDH17 Missense_Mutation p.P280T 0.24 tolerated(0.08) possibly_damaging(0.474) TCGA-B0-5102-01 9 101777786 101777786 G A COL15A1 Missense_Mutation p.V481I 0.19 tolerated_low_confidence(0.32) benign(0) TCGA-B0-5102-01 9 125273604 125273604 C T OR1J2 Missense_Mutation p.P175L 0.14 deleterious_low_confidence(0.03) benign(0.03) TCGA-B0-5102-01 9 138555246 138555246 A C LCN9 Missense_Mutation p.N27H 0.46 tolerated(0.05) possibly_damaging(0.759) TCGA-B0-5102-01 9 35676103 35676103 C G CA9 Missense_Mutation p.P216R 0.59 tolerated(0.35) probably_damaging(0.995) TCGA-B0-5102-01 9 36227443 36227456 ATATATCTTTGAAC GG GNE Splice_Site p.X388_splice 0.13 TCGA-B0-5102-01 X 151821523 151821523 C A GABRQ Missense_Mutation p.L560I 0.46 tolerated(0.22) benign(0.024) TCGA-B0-5102-01 X 49071691 49071691 T G CACNA1F Missense_Mutation p.E1162A 0.35 deleterious(0.02) benign(0.134) TCGA-B0-5102-01 X 53430709 53430709 C G SMC1A Missense_Mutation p.Q771H 0.37 deleterious(0.01) possibly_damaging(0.516) TCGA-B0-5102-01 X 76813066 76813066 C T ATRX Silent p.L2185L 0.34 TCGA-B0-5104-01 10 115356916 115356916 T G NRAP Missense_Mutation p.I1454L 0.28 tolerated(1) benign(0.001) TCGA-B0-5104-01 10 16911671 16911671 C G CUBN Missense_Mutation p.A3140P 0.27 tolerated(0.09) possibly_damaging(0.903) TCGA-B0-5104-01 10 43292488 43292488 C T BMS1 Missense_Mutation p.S599L 0.26 tolerated(0.43) benign(0.002) TCGA-B0-5104-01 10 50732227 50732231 CTTTC TTTT ERCC6-PGBD3 Frame_Shift_Del p.V417Cfs*23 0.19 TCGA-B0-5104-01 11 101981861 101981863 CTT - YAP1 In_Frame_Del p.F96del 0.24 TCGA-B0-5104-01 11 111915861 111915861 G A DLAT Splice_Site p.X400_splice 0.19 TCGA-B0-5104-01 11 111915865 111915865 C G DLAT Missense_Mutation p.P401A 0.18 tolerated(0.4) benign(0.002) TCGA-B0-5104-01 11 6977426 6977426 C A ZNF215 Silent p.P406P 0.35 TCGA-B0-5104-01 11 76256949 76256949 C G C11orf30 Missense_Mutation p.L1128V 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-B0-5104-01 12 100704845 100704845 G A SCYL2 Silent p.L168L 0.18 TCGA-B0-5104-01 12 113865886 113865886 T A SDSL Silent p.P33P 0.22 TCGA-B0-5104-01 12 43771275 43771275 G A ADAMTS20 Missense_Mutation p.R1630W 0.29 tolerated(0.36) benign(0.003) TCGA-B0-5104-01 12 49251928 49251928 A T RND1 Missense_Mutation p.S184T 0.25 tolerated(1) benign(0.093) TCGA-B0-5104-01 12 6127762 6127762 T C VWF Missense_Mutation p.T1608A 0.25 deleterious(0) benign(0.008) TCGA-B0-5104-01 13 38137418 38137418 T A POSTN 3'UTR 0.27 TCGA-B0-5104-01 14 21052170 21052170 T - RNASE11 Frame_Shift_Del p.N155Ifs*23 0.18 TCGA-B0-5104-01 14 24424292 24424292 G T DHRS4 Silent p.V59V 0.24 TCGA-B0-5104-01 14 59112841 59112841 C T DACT1 Silent p.N500N 0.19 TCGA-B0-5104-01 14 90730104 90730104 T G PSMC1 Silent p.S126S 0.23 TCGA-B0-5104-01 15 43525807 43525807 C G TGM5 Missense_Mutation p.D652H 0.11 tolerated(0.14) probably_damaging(0.95) TCGA-B0-5104-01 15 57816796 57816796 G T CGNL1 Missense_Mutation p.E962D 0.21 tolerated(0.12) benign(0.287) TCGA-B0-5104-01 15 58938360 58938360 C T ADAM10 Missense_Mutation p.R210K 0.08 tolerated(0.06) benign(0.373) TCGA-B0-5104-01 15 59409521 59409521 C T CCNB2 Missense_Mutation p.A310V 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-B0-5104-01 16 28878735 28878735 G T SH2B1 Missense_Mutation p.E341D 0.16 tolerated(0.89) probably_damaging(0.996) TCGA-B0-5104-01 16 4924865 4924865 G A UBN1 Silent p.T818T 0.24 TCGA-B0-5104-01 16 57468040 57468041 - TACA CIAPIN1 Frame_Shift_Ins p.Q158Cfs*11 0.20 TCGA-B0-5104-01 16 739435 739435 C T WDR24 Missense_Mutation p.R69H 0.07 deleterious(0) probably_damaging(0.982) TCGA-B0-5104-01 17 10225010 10225010 C A MYH13 Nonsense_Mutation p.E984* 0.19 TCGA-B0-5104-01 17 13400032 13400032 C T HS3ST3A1 Missense_Mutation p.D235N 0.06 tolerated(0.09) benign(0.007) TCGA-B0-5104-01 17 41052960 41052960 T A G6PC Missense_Mutation p.Y23N 0.31 deleterious(0) possibly_damaging(0.878) TCGA-B0-5104-01 17 57058007 57058007 C T PPM1E Missense_Mutation p.T628I 0.30 deleterious_low_confidence(0.01) benign(0.076) TCGA-B0-5104-01 17 72739479 72739479 G T RAB37 Missense_Mutation p.R127S 0.22 deleterious(0.04) possibly_damaging(0.458) TCGA-B0-5104-01 17 73518055 73518055 T G TSEN54 Missense_Mutation p.F298C 0.18 deleterious(0) probably_damaging(0.94) TCGA-B0-5104-01 17 79974805 79974822 GCCTCCCCACAGGTACAT - ASPSCR1 Splice_Site p.X586_splice 0.21 TCGA-B0-5104-01 18 29046612 29046612 G T DSG3 Missense_Mutation p.V511F 0.26 deleterious(0) possibly_damaging(0.856) TCGA-B0-5104-01 19 15917853 15917870 TTCGGTAATCCAATTTAG - OR10H1 3'UTR 0.10 TCGA-B0-5104-01 19 3586520 3586520 A T GIPC3 Nonsense_Mutation p.K85* 0.25 TCGA-B0-5104-01 19 45862051 45862051 A T ERCC2 Intron 0.30 TCGA-B0-5104-01 19 45862052 45862052 T G ERCC2 Intron 0.30 TCGA-B0-5104-01 19 47290655 47290655 A C SLC1A5 Splice_Site p.X189_splice 0.27 TCGA-B0-5104-01 19 9577235 9577235 C G ZNF560 3'UTR 0.30 TCGA-B0-5104-01 1 145456635 145456635 C T POLR3GL 3'UTR 0.23 TCGA-B0-5104-01 1 186056587 186056587 T G HMCN1 Missense_Mutation p.I3058S 0.28 probably_damaging(0.962) TCGA-B0-5104-01 1 201779747 201779747 G A NAV1 Missense_Mutation p.R1553H 0.27 deleterious(0) probably_damaging(0.998) TCGA-B0-5104-01 1 226551746 226551746 A G PARP1 Missense_Mutation p.I895T 0.24 deleterious(0) probably_damaging(0.998) TCGA-B0-5104-01 20 21336744 21336744 G C XRN2 Missense_Mutation p.V683L 0.32 tolerated(0.64) benign(0.001) TCGA-B0-5104-01 20 61594983 61594983 T A SLC17A9 Missense_Mutation p.L258H 0.36 deleterious(0) probably_damaging(0.997) TCGA-B0-5104-01 21 39671523 39671523 C G KCNJ15 Missense_Mutation p.L114V 0.22 deleterious(0.01) possibly_damaging(0.698) TCGA-B0-5104-01 21 45181344 45181344 C T PDXK 3'UTR 0.05 TCGA-B0-5104-01 22 38476983 38476983 G A SLC16A8 Silent p.G354G 0.47 TCGA-B0-5104-01 2 136678172 136678172 T C DARS Splice_Site p.X271_splice 0.25 TCGA-B0-5104-01 2 186669998 186669998 A T FSIP2 Missense_Mutation p.E5411V 0.15 probably_damaging(0.988) TCGA-B0-5104-01 2 220402366 220402366 C T ASIC4 Nonsense_Mutation p.R580* 0.06 TCGA-B0-5104-01 2 227660084 227660084 G A IRS1 Missense_Mutation p.A1124V 0.19 tolerated_low_confidence(0.16) benign(0.001) TCGA-B0-5104-01 2 233246013 233246013 C A ALPP Nonsense_Mutation p.Y415* 0.15 TCGA-B0-5104-01 2 30785088 30785088 G A LCLAT1 Missense_Mutation p.M185I 0.30 tolerated(0.19) benign(0.003) TCGA-B0-5104-01 2 32673959 32673959 C A BIRC6 Silent p.V1527V 0.18 TCGA-B0-5104-01 2 74725150 74725150 C T LBX2 Silent p.L163L 0.36 TCGA-B0-5104-01 3 119396048 119396048 G T COX17 Intron 0.32 TCGA-B0-5104-01 3 121138013 121138013 T A STXBP5L 3'UTR 0.26 TCGA-B0-5104-01 3 52637692 52637694 ATT - PBRM1 In_Frame_Del p.K874_I875delinsN 0.26 TCGA-B0-5104-01 3 57542938 57542940 ACT CC PDE12 Frame_Shift_Del p.T278Pfs*12 0.33 TCGA-B0-5104-01 3 79067688 79067688 C T ROBO1 Intron 0.36 TCGA-B0-5104-01 4 122731151 122731152 GA C EXOSC9 Frame_Shift_Del p.R212Pfs*5 0.17 TCGA-B0-5104-01 4 160264133 160264133 G C RAPGEF2 Missense_Mutation p.G813A 0.33 deleterious(0) probably_damaging(0.998) TCGA-B0-5104-01 4 69111338 69111338 C G TMPRSS11B 5'UTR 0.22 TCGA-B0-5104-01 4 88303419 88303419 G A HSD17B11 Silent p.S102S 0.28 TCGA-B0-5104-01 5 153077687 153077687 C A GRIA1 Missense_Mutation p.N416K 0.24 deleterious(0) probably_damaging(0.998) TCGA-B0-5104-01 5 40852478 40852478 G A CARD6 Silent p.K348K 0.26 TCGA-B0-5104-01 6 107019903 107019903 C T RTN4IP1 Missense_Mutation p.A387T 0.07 tolerated(0.07) possibly_damaging(0.75) TCGA-B0-5104-01 6 32304391 32304391 C G C6orf10 Splice_Site p.X144_splice 0.16 TCGA-B0-5104-01 6 71289120 71289120 C T C6orf57 Missense_Mutation p.S23L 0.11 deleterious(0.04) benign(0.344) TCGA-B0-5104-01 7 18688092 18688092 G T HDAC9 Missense_Mutation p.G418V 0.21 tolerated(0.3) benign(0.287) TCGA-B0-5104-01 7 6094303 6094303 T C EIF2AK1 Missense_Mutation p.K51E 0.23 tolerated(0.09) benign(0.15) TCGA-B0-5104-01 7 99631582 99631582 G T ZKSCAN1 Missense_Mutation p.G485V 0.18 deleterious(0) probably_damaging(1) TCGA-B0-5104-01 8 110576820 110576820 G A EBAG9 3'UTR 0.26 TCGA-B0-5104-01 8 113358405 113358405 C A CSMD3 Silent p.V2121V 0.16 TCGA-B0-5104-01 8 144620458 144620458 T G ZC3H3 Missense_Mutation p.K360T 0.32 deleterious(0) possibly_damaging(0.649) TCGA-B0-5104-01 8 19297429 19297429 C A CSGALNACT1 Nonsense_Mutation p.E289* 0.35 TCGA-B0-5104-01 X 135593367 135593367 G A HTATSF1 Missense_Mutation p.G488D 0.06 tolerated_low_confidence(0.07) benign(0.012) TCGA-B0-5104-01 X 67273543 67273543 C T OPHN1 Silent p.K756K 0.38 TCGA-B0-5106-01 10 104934672 104934673 AT - NT5C2 Frame_Shift_Del p.M15Afs*3 0.28 TCGA-B0-5106-01 10 70706115 70706128 GGCATGATTCCGAC CGCA DDX50 Frame_Shift_Del p.W648Sfs*97 0.28 TCGA-B0-5106-01 10 75830759 75830765 AGGAATT - VCL Frame_Shift_Del p.K139Nfs*28 0.21 TCGA-B0-5106-01 10 93220253 93220253 C T HECTD2 Missense_Mutation p.S113F 0.31 tolerated(0.05) benign(0.193) TCGA-B0-5106-01 11 102100588 102100588 T C YAP1 Silent p.L478L 0.30 TCGA-B0-5106-01 11 122931841 122931841 G A HSPA8 Silent p.T64T 0.27 TCGA-B0-5106-01 11 1264224 1264224 C A MUC5B Silent p.T2038T 0.22 TCGA-B0-5106-01 11 130131043 130131043 A T ZBTB44 Silent p.P242P 0.29 TCGA-B0-5106-01 11 62650443 62650443 A G SLC3A2 Missense_Mutation p.Q323R 0.29 tolerated(0.19) benign(0.029) TCGA-B0-5106-01 12 112891015 112891015 C T PTPN11 Missense_Mutation p.L117F 0.27 deleterious(0) probably_damaging(0.997) TCGA-B0-5106-01 12 116972368 116972368 C T LINC00173 RNA 0.07 TCGA-B0-5106-01 12 118839609 118839609 T - SUDS3 Frame_Shift_Del p.L220Rfs*4 0.22 TCGA-B0-5106-01 12 123481921 123481921 G T PITPNM2 Missense_Mutation p.L475M 0.28 tolerated(0.12) probably_damaging(0.998) TCGA-B0-5106-01 13 28844883 28844883 C A PAN3 Missense_Mutation p.P613Q 0.26 deleterious(0.04) probably_damaging(1) TCGA-B0-5106-01 13 76140954 76140954 G A UCHL3 Missense_Mutation p.A103T 0.24 tolerated(0.07) benign(0.338) TCGA-B0-5106-01 14 53187597 53187597 G A PSMC6 Missense_Mutation p.G280R 0.40 deleterious(0.01) probably_damaging(0.919) TCGA-B0-5106-01 14 53417220 53417220 G A FERMT2 Missense_Mutation p.H23Y 0.32 tolerated(1) benign(0.013) TCGA-B0-5106-01 15 23932263 23932263 C T NDN Silent p.P34P 0.14 TCGA-B0-5106-01 15 77907673 77907673 G C LINGO1 Missense_Mutation p.S192R 0.32 tolerated(0.14) probably_damaging(0.929) TCGA-B0-5106-01 15 78565450 78565450 A G DNAJA4 Silent p.V138V 0.18 TCGA-B0-5106-01 16 2579481 2579481 G A AMDHD2 Missense_Mutation p.V413M 0.19 deleterious(0) probably_damaging(0.987) TCGA-B0-5106-01 16 69727140 69727140 C A NFAT5 Missense_Mutation p.Q1138K 0.39 probably_damaging(0.966) TCGA-B0-5106-01 17 19461004 19461004 C T SLC47A1 Intron 0.23 TCGA-B0-5106-01 17 27401024 27401024 G T TIAF1 Missense_Mutation p.P65H 0.22 tolerated_low_confidence(0.13) benign(0.002) TCGA-B0-5106-01 17 2995985 2995985 G T OR1D2 Nonsense_Mutation p.Y102* 0.27 TCGA-B0-5106-01 17 40765980 40765980 C T TUBG1 Silent p.L269L 0.21 TCGA-B0-5106-01 17 72769778 72769778 A G NAT9 Missense_Mutation p.S43P 0.20 deleterious(0) probably_damaging(1) TCGA-B0-5106-01 18 34156435 34156435 A G FHOD3 Missense_Mutation p.Y178C 0.25 deleterious(0) probably_damaging(0.997) TCGA-B0-5106-01 18 34192014 34192014 A T FHOD3 Nonsense_Mutation p.K305* 0.30 TCGA-B0-5106-01 19 10468695 10468695 G A TYK2 Silent p.G765G 0.24 TCGA-B0-5106-01 19 13325351 13325351 G A CACNA1A Nonsense_Mutation p.Q1935* 0.09 TCGA-B0-5106-01 19 23543184 23543187 GATT - ZNF91 Frame_Shift_Del p.Q865Lfs*9 0.26 TCGA-B0-5106-01 19 4409322 4409322 C G CHAF1A Missense_Mutation p.L176V 0.29 tolerated(0.21) unknown(0) TCGA-B0-5106-01 19 46519960 46519960 A C CCDC61 Missense_Mutation p.Q367P 0.26 deleterious(0.01) possibly_damaging(0.702) TCGA-B0-5106-01 19 49657389 49657389 A T HRC Missense_Mutation p.V369D 0.25 tolerated(0.14) benign(0.201) TCGA-B0-5106-01 1 100928332 100928332 T C CDC14A Missense_Mutation p.Y245H 0.26 tolerated(0.59) benign(0.013) TCGA-B0-5106-01 1 110948984 110948984 A G LAMTOR5 Missense_Mutation p.I100T 0.21 tolerated(0.12) benign(0.19) TCGA-B0-5106-01 1 155730387 155730387 G T GON4L Missense_Mutation p.L1653I 0.23 deleterious(0.02) benign(0.135) TCGA-B0-5106-01 1 170965678 170965678 G T MROH9 Silent p.L456L 0.29 TCGA-B0-5106-01 1 247902753 247902753 A G OR14K1 Silent p.A279A 0.29 TCGA-B0-5106-01 1 45506168 45506168 G T ZSWIM5 Missense_Mutation p.S551Y 0.22 deleterious(0) unknown(0) TCGA-B0-5106-01 1 53972295 53972295 G T GLIS1 Silent p.T620T 0.21 TCGA-B0-5106-01 1 99771417 99771417 A T LPPR4 Missense_Mutation p.R381S 0.29 deleterious(0.01) benign(0.175) TCGA-B0-5106-01 20 20123553 20123553 G A C20orf26 Silent p.L304L 0.16 TCGA-B0-5106-01 20 43739049 43739049 G T WFDC5 Missense_Mutation p.P120H 0.31 deleterious(0) probably_damaging(1) TCGA-B0-5106-01 20 48600840 48600840 G T SNAI1 Missense_Mutation p.A188S 0.11 deleterious(0) probably_damaging(0.999) TCGA-B0-5106-01 20 61167749 61167749 G A C20orf166 Silent p.Q73Q 0.44 TCGA-B0-5106-01 22 38130449 38130449 G C TRIOBP Missense_Mutation p.S1369T 0.32 deleterious_low_confidence(0.02) benign(0.017) TCGA-B0-5106-01 2 131995769 131995769 A C POTEE Missense_Mutation p.K400N 0.17 tolerated_low_confidence(0.16) benign(0.403) TCGA-B0-5106-01 2 218925340 218925340 G T CXCR2P1 RNA 0.24 TCGA-B0-5106-01 2 219498885 219498885 T C PLCD4 Missense_Mutation p.L555P 0.35 deleterious(0.02) probably_damaging(0.988) TCGA-B0-5106-01 2 234526875 234526875 C A UGT1A8 Nonsense_Mutation p.C174* 0.25 TCGA-B0-5106-01 2 26587787 26587787 G A EPT1 Missense_Mutation p.D72N 0.29 deleterious(0) probably_damaging(1) TCGA-B0-5106-01 2 54891784 54891784 T A SPTBN1 Missense_Mutation p.N2205K 0.24 tolerated(0.29) benign(0.102) TCGA-B0-5106-01 2 97514102 97514102 T C ANKRD39 Missense_Mutation p.K163R 0.20 tolerated(0.53) benign(0.004) TCGA-B0-5106-01 3 10183867 10183867 C A VHL Nonsense_Mutation p.Y112* 0.54 TCGA-B0-5106-01 3 13429823 13429823 T A NUP210 Missense_Mutation p.I222F 0.29 deleterious(0) benign(0.23) TCGA-B0-5106-01 3 39225988 39225988 G A XIRP1 Missense_Mutation p.S1650L 0.24 tolerated(0.14) benign(0.001) TCGA-B0-5106-01 3 39225989 39225989 A T XIRP1 Missense_Mutation p.S1650T 0.25 tolerated(1) benign(0.05) TCGA-B0-5106-01 3 50617926 50617926 G A HEMK1 3'UTR 0.28 TCGA-B0-5106-01 4 104510994 104510994 G C TACR3 Missense_Mutation p.P415A 0.19 tolerated(0.43) benign(0.001) TCGA-B0-5106-01 4 110610481 110610484 ATTA - CASP6 3'UTR 0.31 TCGA-B0-5106-01 4 169633073 169633073 C A PALLD Missense_Mutation p.L655I 0.34 deleterious(0.01) possibly_damaging(0.823) TCGA-B0-5106-01 4 24541862 24541862 T A DHX15 Missense_Mutation p.D552V 0.24 deleterious(0.01) probably_damaging(0.948) TCGA-B0-5106-01 4 3138012 3138012 A G HTT Silent p.E919E 0.30 TCGA-B0-5106-01 4 73013490 73013490 G A NPFFR2 Missense_Mutation p.M510I 0.19 tolerated_low_confidence(0.09) benign(0.01) TCGA-B0-5106-01 5 133887864 133887864 T C JADE2 Silent p.P92P 0.23 TCGA-B0-5106-01 5 140203675 140203675 G T PCDHA5 Missense_Mutation p.S772I 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-B0-5106-01 5 140794506 140794506 C T PCDHGA10 Silent p.P588P 0.20 TCGA-B0-5106-01 5 154330404 154330404 A T MRPL22 Missense_Mutation p.H34L 0.20 deleterious(0.02) probably_damaging(0.918) TCGA-B0-5106-01 5 178454496 178454496 T G ZNF879 Missense_Mutation p.V19G 0.10 deleterious(0) probably_damaging(0.999) TCGA-B0-5106-01 5 180039595 180039600 TCAGCA - FLT4 In_Frame_Del p.M1148_L1149del 0.38 TCGA-B0-5106-01 5 3599432 3599432 C A IRX1 Missense_Mutation p.Q124K 0.18 deleterious(0.01) possibly_damaging(0.678) TCGA-B0-5106-01 6 105177476 105177476 C G HACE1 3'UTR 0.32 TCGA-B0-5106-01 6 116599803 116599804 TT - TSPYL1 Frame_Shift_Del p.K397Rfs*15 0.22 TCGA-B0-5106-01 6 13206174 13206174 G A PHACTR1 Silent p.Q264Q 0.29 TCGA-B0-5106-01 6 132785212 132785212 T A STX7 Missense_Mutation p.S205C 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-B0-5106-01 6 132785213 132785213 A T STX7 Missense_Mutation p.D204E 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-B0-5106-01 6 136683700 136683700 C A MAP7 Missense_Mutation p.G494C 0.33 deleterious(0) probably_damaging(1) TCGA-B0-5106-01 6 137245615 137245615 C T SLC35D3 Silent p.G344G 0.06 TCGA-B0-5106-01 6 144812074 144812074 C G UTRN Missense_Mutation p.R1425G 0.26 tolerated(0.06) probably_damaging(0.998) TCGA-B0-5106-01 6 151670459 151670459 C A AKAP12 Silent p.T311T 0.32 TCGA-B0-5106-01 6 160218317 160218317 A C MRPL18 Splice_Site p.X80_splice 0.25 TCGA-B0-5106-01 6 25811911 25811911 T A SLC17A1 Missense_Mutation p.N329Y 0.32 deleterious(0) probably_damaging(0.983) TCGA-B0-5106-01 6 31833744 31833744 G T SLC44A4 Missense_Mutation p.L465I 0.29 deleterious(0) possibly_damaging(0.898) TCGA-B0-5106-01 6 43170869 43170869 G T CUL9 Missense_Mutation p.S1259I 0.21 deleterious(0) probably_damaging(0.986) TCGA-B0-5106-01 6 83906084 83906084 C G RWDD2A 3'UTR 0.33 TCGA-B0-5106-01 7 139741631 139741631 C A PARP12 Missense_Mutation p.C332F 0.31 tolerated(0.12) benign(0.005) TCGA-B0-5106-01 7 150164190 150164190 G A GIMAP8 Missense_Mutation p.R135Q 0.24 tolerated(0.15) benign(0.148) TCGA-B0-5106-01 7 27282680 27282680 C G EVX1 Missense_Mutation p.L11V 0.40 deleterious(0.02) benign(0.046) TCGA-B0-5106-01 8 110530496 110530496 T A PKHD1L1 Silent p.V3930V 0.29 TCGA-B0-5106-01 9 100132270 100132270 A C CCDC180 Missense_Mutation p.N1463T 0.21 deleterious(0.04) possibly_damaging(0.607) TCGA-B0-5106-01 9 107528730 107528730 T C NIPSNAP3B Missense_Mutation p.L62P 0.24 deleterious(0) possibly_damaging(0.547) TCGA-B0-5106-01 9 88960584 88960584 C A ZCCHC6 Missense_Mutation p.K273N 0.23 tolerated(0.05) probably_damaging(0.938) TCGA-B0-5106-01 9 91943568 91943574 ATTACAG TT SECISBP2 Splice_Site p.X192_splice 0.23 TCGA-B0-5106-01 X 118222879 118222879 T C KIAA1210 Missense_Mutation p.R772G 0.50 tolerated(0.74) benign(0.015) TCGA-B0-5106-01 X 53239905 53239905 G C KDM5C Missense_Mutation p.C512W 0.50 deleterious(0.02) probably_damaging(1) TCGA-B0-5107-01 10 1149775 1149775 A C WDR37 Silent p.T320T 0.35 TCGA-B0-5107-01 10 124593448 124593448 C T CUZD1 Missense_Mutation p.R464Q 0.28 tolerated(0.22) benign(0.005) TCGA-B0-5107-01 11 119050726 119050726 G A NLRX1 Missense_Mutation p.G666S 0.17 tolerated(0.99) probably_damaging(0.929) TCGA-B0-5107-01 11 1268529 1268529 G A MUC5B Silent p.S3473S 0.14 TCGA-B0-5107-01 11 14793670 14793670 A T PDE3B Intron 0.50 TCGA-B0-5107-01 11 66391778 66391778 T G RBM14 Missense_Mutation p.V144G 0.30 deleterious(0) probably_damaging(0.997) TCGA-B0-5107-01 11 70332433 70332433 G C SHANK2 Missense_Mutation p.T1323S 0.26 tolerated(0.23) benign(0.001) TCGA-B0-5107-01 12 49110458 49110458 T G CCNT1 Translation_Start_Site p.M1? 0.49 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-B0-5107-01 12 89885726 89885726 C - POC1B Frame_Shift_Del p.V147Yfs*12 0.39 TCGA-B0-5107-01 12 96181160 96181161 AG - NTN4 Frame_Shift_Del p.W48Gfs*18 0.38 TCGA-B0-5107-01 13 36049373 36049373 G A MAB21L1 Silent p.N301N 0.30 TCGA-B0-5107-01 14 24774973 24774973 T C CIDEB Splice_Site p.X176_splice 0.45 TCGA-B0-5107-01 14 32560575 32560575 A - ARHGAP5 Frame_Shift_Del p.N234Tfs*50 0.37 TCGA-B0-5107-01 14 76088434 76088434 A G FLVCR2 Missense_Mutation p.I228V 0.46 tolerated(0.47) benign(0.019) TCGA-B0-5107-01 15 42702005 42702005 T G CAPN3 Missense_Mutation p.D671E 0.27 tolerated(1) benign(0.008) TCGA-B0-5107-01 15 83226709 83226709 C A CPEB1 Missense_Mutation p.G136V 0.29 deleterious_low_confidence(0) benign(0.311) TCGA-B0-5107-01 15 85406027 85406027 G A ALPK3 Missense_Mutation p.G1633R 0.37 deleterious(0) probably_damaging(1) TCGA-B0-5107-01 17 1326915 1326915 A G CRK Silent p.I269I 0.27 TCGA-B0-5107-01 17 14673519 14673519 C G AC005863.1 RNA 0.22 TCGA-B0-5107-01 17 21147503 21147503 G A C17orf103 Silent p.Y46Y 0.29 TCGA-B0-5107-01 17 3119395 3119395 C A OR1A1 Missense_Mutation p.L161M 0.28 deleterious(0) probably_damaging(0.982) TCGA-B0-5107-01 17 74011147 74011147 C T EVPL Missense_Mutation p.R691Q 0.09 tolerated(0.32) benign(0.014) TCGA-B0-5107-01 18 7026067 7026067 C T LAMA1 Silent p.Q771Q 0.24 TCGA-B0-5107-01 19 33493761 33493761 A G RHPN2 Silent p.N302N 0.22 TCGA-B0-5107-01 19 40382734 40382734 T A FCGBP Silent p.S3384S 0.38 TCGA-B0-5107-01 19 57640818 57640818 G T USP29 Nonsense_Mutation p.E259* 0.27 TCGA-B0-5107-01 19 6686809 6686809 C G C3 Missense_Mutation p.Q1198H 0.28 tolerated(0.1) benign(0.024) TCGA-B0-5107-01 19 8165827 8165827 C T FBN3 Missense_Mutation p.A1707T 0.24 tolerated(0.46) benign(0.271) TCGA-B0-5107-01 1 118598450 118598450 T A SPAG17 Missense_Mutation p.K876N 0.24 deleterious(0.01) benign(0.001) TCGA-B0-5107-01 1 150482475 150482475 G A ECM1 Missense_Mutation p.E128K 0.24 tolerated(1) benign(0.004) TCGA-B0-5107-01 1 161677075 161677075 C A FCRLA Silent p.L24L 0.31 TCGA-B0-5107-01 1 224491542 224491542 G A NVL Silent p.L281L 0.30 TCGA-B0-5107-01 1 248569296 248569297 - TGTG OR2T1 Frame_Shift_Ins p.W2Cfs*23 0.27 TCGA-B0-5107-01 1 38079542 38079542 C T RSPO1 Nonsense_Mutation p.W153* 0.24 TCGA-B0-5107-01 1 40226077 40226077 C T BMP8B 3'UTR 0.28 TCGA-B0-5107-01 1 52492991 52492991 C A TXNDC12 Nonsense_Mutation p.E81* 0.28 TCGA-B0-5107-01 20 40944427 40944427 T C PTPRT Missense_Mutation p.N692S 0.35 deleterious(0.01) probably_damaging(0.97) TCGA-B0-5107-01 20 62737383 62737383 C T NPBWR2 Missense_Mutation p.V268M 0.36 deleterious(0) probably_damaging(0.949) TCGA-B0-5107-01 21 11038813 11038813 G T BAGE2 RNA 0.17 TCGA-B0-5107-01 2 109384143 109384143 A G RANBP2 Missense_Mutation p.N2383S 0.30 deleterious(0) probably_damaging(0.998) TCGA-B0-5107-01 2 113342211 113342211 G A CHCHD5 5'UTR 0.05 TCGA-B0-5107-01 2 152352797 152352797 A G NEB Missense_Mutation p.I8160T 0.32 benign(0.02) TCGA-B0-5107-01 2 72359545 72359545 G T CYP26B1 Missense_Mutation p.F450L 0.27 tolerated(1) benign(0.101) TCGA-B0-5107-01 3 10183794 10183794 G T VHL Missense_Mutation p.W88L 0.40 deleterious(0.03) probably_damaging(0.941) TCGA-B0-5107-01 3 142266605 142266605 A - ATR Frame_Shift_Del p.Y1107Ifs*12 0.23 TCGA-B0-5107-01 3 443351 443351 C T CHL1 Missense_Mutation p.S1143L 0.32 tolerated(0.12) probably_damaging(0.999) TCGA-B0-5107-01 3 52442512 52442512 T C BAP1 Missense_Mutation p.N78S 0.42 tolerated(0.06) probably_damaging(0.975) TCGA-B0-5107-01 3 52676063 52676063 T A PBRM1 Splice_Site p.X332_splice 0.49 TCGA-B0-5107-01 4 15938034 15938034 C A FGFBP1 Missense_Mutation p.E74D 0.32 deleterious(0.03) possibly_damaging(0.79) TCGA-B0-5107-01 5 78608277 78608277 C A JMY Missense_Mutation p.Q674K 0.29 tolerated(0.06) possibly_damaging(0.719) TCGA-B0-5107-01 6 157744466 157744466 A G TMEM242 Silent p.N22N 0.27 TCGA-B0-5107-01 6 28483478 28483478 G - GPX6 Frame_Shift_Del p.L15Wfs*9 0.24 TCGA-B0-5107-01 6 31599655 31599655 G A PRRC2A Missense_Mutation p.G1069R 0.28 unknown(0) TCGA-B0-5107-01 7 101845357 101845358 - C CUX1 Frame_Shift_Ins p.L941Afs*24 0.35 TCGA-B0-5107-01 7 129297261 129297261 G A NRF1 Missense_Mutation p.V24M 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.692) TCGA-B0-5107-01 7 142247177 142247177 G A TRBV7-3 Silent p.V93V 0.24 TCGA-B0-5107-01 7 154379787 154379787 C A DPP6 Intron 0.28 TCGA-B0-5107-01 7 36478858 36478858 A C ANLN Missense_Mutation p.K977Q 0.38 tolerated(0.69) probably_damaging(0.99) TCGA-B0-5107-01 7 5023400 5023400 C A RBAK-RBAKDN 5'UTR 0.14 TCGA-B0-5107-01 7 5023401 5023401 A C RBAK-RBAKDN 5'UTR 0.15 TCGA-B0-5107-01 7 939073 939073 A C ADAP1 Missense_Mutation p.Y284D 0.37 deleterious(0) probably_damaging(1) TCGA-B0-5107-01 8 106813890 106813890 G A ZFPM2 Missense_Mutation p.R527Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-B0-5107-01 8 24366159 24366159 T C ADAM7 3'UTR 0.27 TCGA-B0-5107-01 8 48694798 48694798 C T PRKDC Nonsense_Mutation p.W3804* 0.15 TCGA-B0-5107-01 9 102626233 102626233 T G NR4A3 3'UTR 0.42 TCGA-B0-5107-01 9 120475390 120475390 T C TLR4 Silent p.Y328Y 0.46 TCGA-B0-5107-01 9 125865394 125865394 G A RABGAP1 Missense_Mutation p.A1038T 0.35 tolerated(1) probably_damaging(0.984) TCGA-B0-5107-01 9 2116050 2116050 G A SMARCA2 Splice_Site p.X1228_splice 0.39 TCGA-B0-5107-01 X 12939545 12939545 C A TLR8 Missense_Mutation p.P796T 0.32 deleterious(0) probably_damaging(0.991) TCGA-B0-5107-01 X 17745608 17745608 C G NHS Missense_Mutation p.P1107A 0.29 tolerated(0.12) benign(0.011) TCGA-B0-5107-01 X 18836212 18836212 C T PPEF1 Nonsense_Mutation p.R484* 0.31 TCGA-B0-5107-01 X 18970644 18970644 T A PHKA2 Missense_Mutation p.M85L 0.33 deleterious(0) benign(0.394) TCGA-B0-5107-01 X 88009260 88009260 G A CPXCR1 Missense_Mutation p.G282E 0.29 deleterious(0.01) benign(0.037) TCGA-B0-5108-01 10 56077194 56077194 G T PCDH15 Missense_Mutation p.A238D 0.22 deleterious(0.04) possibly_damaging(0.854) TCGA-B0-5108-01 10 64573610 64573610 G - EGR2 Frame_Shift_Del p.T263Ifs*18 0.24 TCGA-B0-5108-01 11 111591281 111591281 C G SIK2 Missense_Mutation p.D525E 0.24 tolerated(0.06) benign(0.025) TCGA-B0-5108-01 11 35208449 35208449 T A CD44 Splice_Site p.X146_splice 0.18 TCGA-B0-5108-01 11 62744780 62744780 G A SLC22A6 Missense_Mutation p.L481F 0.23 tolerated(0.71) benign(0.077) TCGA-B0-5108-01 12 14656715 14656715 A G PLBD1 Silent p.D551D 0.17 TCGA-B0-5108-01 12 14832651 14832651 T A GUCY2C Missense_Mutation p.K257M 0.19 deleterious(0.04) benign(0.252) TCGA-B0-5108-01 12 49420872 49420872 G C KMT2D Silent p.A4959A 0.16 TCGA-B0-5108-01 12 64472751 64472752 - C SRGAP1 Frame_Shift_Ins p.E394Rfs*4 0.22 TCGA-B0-5108-01 13 39420850 39420850 T C FREM2 Missense_Mutation p.S2054P 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-B0-5108-01 13 48620101 48620101 T C NUDT15 3'UTR 0.31 TCGA-B0-5108-01 14 24731316 24731316 G A TGM1 Silent p.G81G 0.25 TCGA-B0-5108-01 14 50626575 50626575 T G SOS2 Missense_Mutation p.T476P 0.21 tolerated(0.55) benign(0.002) TCGA-B0-5108-01 14 62261727 62261727 T G SNAPC1 3'UTR 0.17 TCGA-B0-5108-01 16 89804179 89804179 C T FANCA 3'UTR 0.13 TCGA-B0-5108-01 17 39768515 39768515 G C KRT16 Missense_Mutation p.N142K 0.18 deleterious(0) probably_damaging(0.996) TCGA-B0-5108-01 18 31318800 31318800 G A ASXL3 Missense_Mutation p.E478K 0.13 benign(0.043) TCGA-B0-5108-01 19 1456344 1456344 C A APC2 Missense_Mutation p.P253T 0.16 benign(0.011) TCGA-B0-5108-01 19 35175869 35175869 A G ZNF302 Silent p.Q309Q 0.23 TCGA-B0-5108-01 19 52918827 52918827 A - ZNF528 Frame_Shift_Del p.Y241Sfs*100 0.11 TCGA-B0-5108-01 19 57326087 57326087 A C PEG3 Missense_Mutation p.N1241K 0.22 tolerated(0.77) benign(0.309) TCGA-B0-5108-01 1 104160101 104160101 C A AMY2A Nonsense_Mutation p.C13* 0.16 TCGA-B0-5108-01 1 153346341 153346341 C T S100A12 Missense_Mutation p.A81T 0.17 deleterious(0) benign(0.065) TCGA-B0-5108-01 1 156845351 156845351 C - NTRK1 Frame_Shift_Del p.L466Cfs*4 0.32 TCGA-B0-5108-01 1 202117740 202117740 G C PTPN7 Missense_Mutation p.S464R 0.12 deleterious_low_confidence(0.01) benign(0.004) TCGA-B0-5108-01 1 215987118 215987118 A C USH2A Missense_Mutation p.N3233K 0.18 benign(0.001) TCGA-B0-5108-01 1 28282544 28282544 A G SMPDL3B Missense_Mutation p.N319S 0.06 deleterious(0) probably_damaging(0.999) TCGA-B0-5108-01 1 45347334 45347334 C - EIF2B3 Frame_Shift_Del p.G245Dfs*9 0.18 TCGA-B0-5108-01 1 55223346 55223346 A T PARS2 3'UTR 0.21 TCGA-B0-5108-01 20 25442206 25442206 C A NINL Missense_Mutation p.Q1216H 0.12 deleterious(0) benign(0.135) TCGA-B0-5108-01 20 31025137 31025137 G C ASXL1 Missense_Mutation p.R1541T 0.14 deleterious(0) probably_damaging(0.997) TCGA-B0-5108-01 20 9374306 9374306 G T PLCB4 Silent p.L465L 0.17 TCGA-B0-5108-01 22 29835224 29835224 T C RFPL1 Intron 0.17 TCGA-B0-5108-01 22 50926751 50926751 G A MIOX Missense_Mutation p.A130T 0.11 tolerated(0.27) possibly_damaging(0.664) TCGA-B0-5108-01 2 180818964 180818964 G A CWC22 Missense_Mutation p.H553Y 0.22 deleterious(0) benign(0.349) TCGA-B0-5108-01 2 219487602 219487602 G C PLCD4 Splice_Site p.X258_splice 0.20 TCGA-B0-5108-01 2 264937 264941 GTGTC - ACP1 5'UTR 0.26 TCGA-B0-5108-01 2 55772134 55772134 T C CCDC104 Missense_Mutation p.I340T 0.25 deleterious(0) probably_damaging(0.996) TCGA-B0-5108-01 2 98201807 98201807 C T ANKRD36B RNA 0.29 TCGA-B0-5108-01 3 10188248 10188248 A T VHL Missense_Mutation p.N131Y 0.27 deleterious(0) probably_damaging(1) TCGA-B0-5108-01 3 196753618 196753618 C G MFI2 Missense_Mutation p.D73H 0.15 deleterious(0.04) possibly_damaging(0.839) TCGA-B0-5108-01 3 58128451 58128451 G A FLNB Silent p.P1783P 0.14 TCGA-B0-5108-01 4 104054940 104054940 T C CENPE Missense_Mutation p.K2211R 0.22 benign(0.166) TCGA-B0-5108-01 4 94547477 94547477 A T GRID2 Missense_Mutation p.I751F 0.17 deleterious(0.03) benign(0.124) TCGA-B0-5108-01 5 122685709 122685709 A T CEP120 Silent p.L885L 0.18 TCGA-B0-5108-01 5 179047903 179047903 C T HNRNPH1 Silent p.Q129Q 0.25 TCGA-B0-5108-01 6 112522880 112522880 T - LAMA4 Frame_Shift_Del p.E144Dfs*54 0.24 TCGA-B0-5108-01 6 14135539 14135541 AGA - CD83 3'UTR 0.16 TCGA-B0-5108-01 6 155153658 155153658 C T SCAF8 Missense_Mutation p.P982L 0.18 tolerated_low_confidence(0.07) possibly_damaging(0.893) TCGA-B0-5108-01 6 54791201 54791201 T C FAM83B Silent p.D159D 0.29 TCGA-B0-5108-01 6 56394513 56394513 G T DST Silent p.G3153G 0.19 TCGA-B0-5108-01 7 73462860 73462860 C T ELN Missense_Mutation p.A258V 0.11 unknown(0) TCGA-B0-5108-01 8 101153613 101153613 G C FBXO43 Missense_Mutation p.T290R 0.19 tolerated(0.17) benign(0.016) TCGA-B0-5108-01 9 6420934 6420934 T C UHRF2 Missense_Mutation p.F59S 0.09 deleterious(0) probably_damaging(0.992) TCGA-B0-5108-01 X 102005104 102005104 G T BHLHB9 Missense_Mutation p.G394V 0.30 tolerated(0.38) benign(0.009) TCGA-B0-5108-01 X 53230876 53230877 - T KDM5C Nonsense_Mutation p.Y639* 0.30 TCGA-B0-5109-01 10 43659363 43659363 A G CSGALNACT2 Missense_Mutation p.N344D 0.04 deleterious(0) possibly_damaging(0.604) TCGA-B0-5109-01 10 55944912 55944912 C A PCDH15 Missense_Mutation p.Q474H 0.08 tolerated(0.15) probably_damaging(0.995) TCGA-B0-5109-01 10 93258806 93258806 G A HECTD2 Missense_Mutation p.V617I 0.11 tolerated(0.06) probably_damaging(0.951) TCGA-B0-5109-01 11 14793556 14793556 A C PDE3B Intron 0.18 TCGA-B0-5109-01 11 9446754 9446754 G A IPO7 Missense_Mutation p.R427Q 0.22 tolerated(0.08) benign(0.409) TCGA-B0-5109-01 12 101504334 101504334 G C ANO4 Missense_Mutation p.G733R 0.18 deleterious(0) probably_damaging(1) TCGA-B0-5109-01 12 6936017 6936017 A T GPR162 Missense_Mutation p.E472V 0.42 tolerated_low_confidence(0.1) benign(0.025) TCGA-B0-5109-01 12 91502697 91502697 G C LUM Nonsense_Mutation p.Y20* 0.21 TCGA-B0-5109-01 13 77817235 77817235 C G MYCBP2 Missense_Mutation p.R825P 0.17 probably_damaging(0.987) TCGA-B0-5109-01 14 23890215 23890215 A T MYH7 Missense_Mutation p.D1096E 0.21 tolerated(0.07) possibly_damaging(0.858) TCGA-B0-5109-01 14 58831552 58831552 A C ARID4A Silent p.I915I 0.28 TCGA-B0-5109-01 15 75977757 75977757 G C CSPG4 Missense_Mutation p.P1359A 0.20 deleterious(0.03) probably_damaging(0.987) TCGA-B0-5109-01 16 10525162 10525162 G T ATF7IP2 Missense_Mutation p.V229F 0.24 tolerated(0.06) benign(0.052) TCGA-B0-5109-01 16 68055772 68055772 T C DDX28 Missense_Mutation p.K445R 0.12 tolerated(0.07) benign(0.077) TCGA-B0-5109-01 16 731897 731897 C A JMJD8 3'UTR 0.22 TCGA-B0-5109-01 17 10309525 10309525 C T MYH8 Intron 0.18 TCGA-B0-5109-01 17 70119701 70119701 C G SOX9 Missense_Mutation p.P235A 0.27 deleterious(0) benign(0.125) TCGA-B0-5109-01 17 72919137 72919137 T G USH1G Missense_Mutation p.D11A 0.20 deleterious(0) probably_damaging(0.997) TCGA-B0-5109-01 17 74621351 74621351 G C ST6GALNAC1 3'UTR 0.38 TCGA-B0-5109-01 17 74734379 74734379 C T RP11-318A15.7 Missense_Mutation p.S85L 0.24 deleterious_low_confidence(0.01) benign(0.001) TCGA-B0-5109-01 17 7701105 7701105 G A DNAH2 Missense_Mutation p.V2730M 0.18 probably_damaging(0.99) TCGA-B0-5109-01 18 33689577 33689577 G A SLC39A6 Silent p.I749I 0.20 TCGA-B0-5109-01 19 44982265 44982265 C - ZNF180 Frame_Shift_Del p.D145Mfs*57 0.27 TCGA-B0-5109-01 19 48306137 48306137 G A TPRX1 Missense_Mutation p.A44V 0.29 deleterious(0.02) unknown(0) TCGA-B0-5109-01 1 117131339 117131339 G A IGSF3 Missense_Mutation p.T826I 0.28 deleterious(0) possibly_damaging(0.855) TCGA-B0-5109-01 1 151288136 151288136 G A PI4KB Silent p.R286R 0.23 TCGA-B0-5109-01 1 166908755 166908755 C T ILDR2 Missense_Mutation p.M184I 0.21 deleterious(0) probably_damaging(0.958) TCGA-B0-5109-01 1 247202840 247202840 C T ZNF670 Splice_Site p.X2_splice 0.18 TCGA-B0-5109-01 20 47682942 47682942 C A CSE1L Missense_Mutation p.P124Q 0.21 deleterious(0) probably_damaging(0.994) TCGA-B0-5109-01 22 38151617 38151617 G T TRIOBP Nonsense_Mutation p.E1880* 0.19 TCGA-B0-5109-01 2 228881360 228881360 C G SPHKAP Missense_Mutation p.E1404Q 0.26 tolerated(0.11) benign(0.086) TCGA-B0-5109-01 2 71653878 71653880 GAA - ZNF638 In_Frame_Del p.E1629del 0.16 TCGA-B0-5109-01 3 132416207 132416207 C A NPHP3 Splice_Site p.X662_splice 0.34 TCGA-B0-5109-01 3 184064449 184064449 C T CLCN2 Missense_Mutation p.R881H 0.35 tolerated(0.47) benign(0.001) TCGA-B0-5109-01 3 9960258 9960258 G T IL17RC Missense_Mutation p.V215L 0.18 tolerated(0.17) benign(0.019) TCGA-B0-5109-01 4 1804696 1804696 C A FGFR3 Nonsense_Mutation p.S329* 0.39 TCGA-B0-5109-01 4 22820365 22820365 A G GBA3 Missense_Mutation p.N410S 0.42 tolerated(0.07) benign(0.007) TCGA-B0-5109-01 5 114513529 114513529 C T TRIM36 Intron 0.17 TCGA-B0-5109-01 5 132094374 132094374 G A SEPT8 Intron 0.19 TCGA-B0-5109-01 5 140750550 140750550 A T PCDHGB3 Nonsense_Mutation p.K197* 0.16 TCGA-B0-5109-01 5 159680467 159680467 G C CCNJL Missense_Mutation p.P409R 0.16 deleterious(0.01) probably_damaging(0.985) TCGA-B0-5109-01 5 40692474 40692475 TA - PTGER4 Frame_Shift_Del p.*489I 0.22 TCGA-B0-5109-01 6 136682267 136682267 C T MAP7 Missense_Mutation p.R548H 0.32 deleterious(0) unknown(0) TCGA-B0-5109-01 7 131194328 131194328 C T PODXL Silent p.S273S 0.18 TCGA-B0-5109-01 7 151262817 151262817 A C PRKAG2 Missense_Mutation p.V463G 0.15 deleterious(0) probably_damaging(1) TCGA-B0-5109-01 7 26235512 26235512 G T HNRNPA2B1 Missense_Mutation p.R238S 0.18 tolerated(0.45) unknown(0) TCGA-B0-5109-01 7 44040585 44040585 G C SPDYE1 5'UTR 0.27 TCGA-B0-5109-01 7 50467716 50467716 C T IKZF1 Silent p.N275N 0.19 TCGA-B0-5109-01 7 72745747 72745747 C T FKBP6 Missense_Mutation p.R186C 0.21 tolerated(0.13) benign(0.082) TCGA-B0-5109-01 7 99662005 99662005 G A ZSCAN21 Missense_Mutation p.S396N 0.20 deleterious(0.01) benign(0.288) TCGA-B0-5109-01 8 61777948 61777948 A G CHD7 Missense_Mutation p.N2817S 0.22 benign(0.369) TCGA-B0-5109-01 8 62212433 62212433 G T CLVS1 Missense_Mutation p.W16L 0.18 tolerated_low_confidence(0.19) benign(0) TCGA-B0-5109-01 9 131345086 131345086 G C SPTAN1 Missense_Mutation p.W588C 0.40 deleterious(0) probably_damaging(1) TCGA-B0-5109-01 9 139909971 139909971 C A ABCA2 Missense_Mutation p.G1198W 0.18 deleterious(0.01) probably_damaging(1) TCGA-B0-5109-01 9 79908261 79908261 T - VPS13A Frame_Shift_Del p.Y1116Ifs*27 0.24 TCGA-B0-5109-01 9 95177538 95177538 C A OMD Missense_Mutation p.D388Y 0.33 deleterious_low_confidence(0) benign(0.365) TCGA-B0-5109-01 X 46433704 46433704 G A CHST7 Missense_Mutation p.G113D 0.16 deleterious(0) probably_damaging(1) TCGA-B0-5109-01 X 73051012 73051012 C A XIST RNA 0.40 TCGA-B0-5110-01 10 111877147 111877147 C T ADD3 Silent p.G178G 0.21 TCGA-B0-5110-01 10 114190471 114190471 C A ZDHHC6 3'UTR 0.13 TCGA-B0-5110-01 10 47909179 47909181 ATA - FAM21B In_Frame_Del p.N251del 0.29 TCGA-B0-5110-01 10 95076526 95076526 G C MYOF Silent p.P1881P 0.24 TCGA-B0-5110-01 10 98405300 98405300 G A PIK3AP1 Silent p.L435L 0.27 TCGA-B0-5110-01 10 99350271 99350271 G C C10orf62 Missense_Mutation p.S206T 0.28 deleterious(0.01) benign(0.031) TCGA-B0-5110-01 11 120096481 120096481 G T OAF Nonsense_Mutation p.E115* 0.20 TCGA-B0-5110-01 11 124824706 124824706 G - CCDC15 Frame_Shift_Del p.D27Tfs*13 0.21 TCGA-B0-5110-01 11 55563209 55563209 C A OR5D14 Missense_Mutation p.P60T 0.22 deleterious(0.01) possibly_damaging(0.801) TCGA-B0-5110-01 11 55999686 55999686 G T OR5T2 Missense_Mutation p.P326T 0.21 deleterious(0) probably_damaging(0.991) TCGA-B0-5110-01 11 64854837 64854837 C A ZFPL1 Silent p.L226L 0.22 TCGA-B0-5110-01 12 113379477 113379477 C T OAS3 Missense_Mutation p.R94C 0.24 deleterious(0.02) benign(0.007) TCGA-B0-5110-01 12 121758187 121758187 C A ANAPC5 Splice_Site p.X505_splice 0.27 TCGA-B0-5110-01 12 123343990 123343990 C T HIP1R Silent p.S771S 0.28 TCGA-B0-5110-01 12 21968702 21968702 G T ABCC9 Missense_Mutation p.Q1340K 0.20 deleterious(0.02) benign(0.055) TCGA-B0-5110-01 12 4554409 4554409 G T FGF6 Missense_Mutation p.H110N 0.18 deleterious(0) probably_damaging(0.986) TCGA-B0-5110-01 12 50236870 50236870 T A BCDIN3D Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) benign(0.008) TCGA-B0-5110-01 12 52799753 52799753 G A KRT82 Silent p.V103V 0.04 TCGA-B0-5110-01 12 52881498 52881498 C T KRT6A 3'UTR 0.25 TCGA-B0-5110-01 12 95676229 95676229 A G VEZT Silent p.Q379Q 0.23 TCGA-B0-5110-01 13 109672228 109672228 C T MYO16 Missense_Mutation p.T900I 0.20 tolerated(0.21) benign(0.113) TCGA-B0-5110-01 13 39587314 39587314 G A PROSER1 Missense_Mutation p.P692L 0.20 deleterious(0) probably_damaging(0.926) TCGA-B0-5110-01 13 41767262 41767262 G T KBTBD7 Missense_Mutation p.H378N 0.24 tolerated(0.49) benign(0.071) TCGA-B0-5110-01 14 103802419 103802419 T C EIF5 Missense_Mutation p.V40A 0.24 tolerated(0.9) benign(0.02) TCGA-B0-5110-01 14 22466360 22466360 C T TRAV17 Missense_Mutation p.T97M 0.24 tolerated(0.24) benign(0.116) TCGA-B0-5110-01 15 86838616 86838616 G C AGBL1 Missense_Mutation p.S738T 0.17 tolerated(0.22) benign(0.438) TCGA-B0-5110-01 16 20802204 20802204 C A ACSM3 Intron 0.22 TCGA-B0-5110-01 16 22926609 22926609 T A HS3ST2 Missense_Mutation p.L277H 0.05 deleterious(0) probably_damaging(1) TCGA-B0-5110-01 16 31496212 31496212 A G SLC5A2 Missense_Mutation p.S91G 0.27 tolerated(0.57) benign(0.001) TCGA-B0-5110-01 16 50138980 50138980 A - HEATR3 3'UTR 0.24 TCGA-B0-5110-01 16 5128755 5128755 C T ALG1 Intron 0.18 TCGA-B0-5110-01 16 53296952 53296952 C - CHD9 Frame_Shift_Del p.F1422Sfs*11 0.24 TCGA-B0-5110-01 16 61687392 61687392 T C CDH8 3'UTR 0.09 TCGA-B0-5110-01 17 10427079 10427079 A - MYH2 Frame_Shift_Del p.D1767Mfs*4 0.16 TCGA-B0-5110-01 17 37333729 37333729 C T CACNB1 Silent p.A402A 0.24 TCGA-B0-5110-01 17 37866350 37866350 G A ERBB2 Missense_Mutation p.V219I 0.28 tolerated(0.92) benign(0) TCGA-B0-5110-01 17 46654154 46654154 C T HOXB4 Missense_Mutation p.R229H 0.25 deleterious(0) unknown(0) TCGA-B0-5110-01 17 7385621 7385621 C T SLC35G6 Silent p.F106F 0.25 TCGA-B0-5110-01 17 73975031 73975031 G A ACOX1 Intron 0.21 TCGA-B0-5110-01 18 57136800 57136800 C T CCBE1 Missense_Mutation p.C102Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-B0-5110-01 19 10818039 10818039 G - QTRT1 Frame_Shift_Del p.E172Rfs*46 0.29 TCGA-B0-5110-01 19 11959618 11959618 C A ZNF439 5'UTR 0.20 TCGA-B0-5110-01 19 14952067 14952067 C G OR7A10 Missense_Mutation p.G208A 0.19 tolerated_low_confidence(0.08) possibly_damaging(0.669) TCGA-B0-5110-01 19 15227242 15227242 G T ILVBL Missense_Mutation p.D426E 0.08 tolerated(0.27) benign(0.13) TCGA-B0-5110-01 19 56732944 56732944 T C ZSCAN5A Nonstop_Mutation p.*497Wext*14 0.29 TCGA-B0-5110-01 1 107599560 107599560 C A PRMT6 Missense_Mutation p.L75I 0.26 tolerated(0.09) benign(0.027) TCGA-B0-5110-01 1 155145769 155145771 CTA - KRTCAP2 In_Frame_Del p.I3_A4delinsT 0.43 TCGA-B0-5110-01 1 155205493 155205493 A T GBA Missense_Mutation p.F456Y 0.18 tolerated(0.24) possibly_damaging(0.532) TCGA-B0-5110-01 1 161179063 161179063 G T NDUFS2 Missense_Mutation p.L158F 0.06 deleterious(0.01) probably_damaging(0.962) TCGA-B0-5110-01 1 177250548 177250548 C T BRINP2 Missense_Mutation p.R746W 0.31 deleterious(0) probably_damaging(0.998) TCGA-B0-5110-01 1 232538143 232538143 G A SIPA1L2 Missense_Mutation p.R1673W 0.21 deleterious(0) possibly_damaging(0.677) TCGA-B0-5110-01 1 29475063 29475063 G C SRSF4 Silent p.S448S 0.25 TCGA-B0-5110-01 1 35917273 35917273 C T KIAA0319L Missense_Mutation p.R673K 0.26 tolerated(0.21) benign(0.289) TCGA-B0-5110-01 1 86947888 86947888 A G CLCA1 Silent p.R186R 0.12 TCGA-B0-5110-01 22 21385823 21385823 C T SLC7A4 Silent p.G93G 0.16 TCGA-B0-5110-01 2 130832786 130832786 A G POTEF Silent p.Y753Y 0.04 TCGA-B0-5110-01 2 137917883 137917884 GT - THSD7B Frame_Shift_Del p.W490Cfs*9 0.20 TCGA-B0-5110-01 2 32631593 32631593 G A BIRC6 Missense_Mutation p.S482N 0.19 probably_damaging(0.953) TCGA-B0-5110-01 2 50850622 50850622 G A NRXN1 Missense_Mutation p.L355F 0.07 tolerated(0.43) possibly_damaging(0.676) TCGA-B0-5110-01 2 63101527 63101527 T A EHBP1 Missense_Mutation p.L384M 0.26 tolerated(0.13) benign(0.396) TCGA-B0-5110-01 2 86712976 86712976 G A KDM3A Missense_Mutation p.A1103T 0.21 deleterious(0) probably_damaging(0.998) TCGA-B0-5110-01 3 183211912 183211912 G T KLHL6 Silent p.I435I 0.23 TCGA-B0-5110-01 3 33093265 33093265 A C GLB1 Missense_Mutation p.F314V 0.31 deleterious(0) probably_damaging(1) TCGA-B0-5110-01 3 52595863 52595864 TC - PBRM1 Frame_Shift_Del p.D1351Lfs*18 0.21 TCGA-B0-5110-01 4 146063450 146063450 G A OTUD4 Missense_Mutation p.P509S 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-B0-5110-01 4 44450161 44450161 T C KCTD8 Missense_Mutation p.K127R 0.22 tolerated(1) benign(0.016) TCGA-B0-5110-01 4 6611625 6611625 G C MAN2B2 Missense_Mutation p.E703Q 0.20 tolerated(0.07) benign(0.248) TCGA-B0-5110-01 6 100009547 100009547 T A CCNC Silent p.A50A 0.25 TCGA-B0-5110-01 6 149944376 149944376 C A KATNA1 Missense_Mutation p.D122Y 0.24 deleterious(0.01) probably_damaging(0.943) TCGA-B0-5110-01 7 91708532 91708532 A - AKAP9 Frame_Shift_Del p.E2362Dfs*11 0.20 TCGA-B0-5110-01 8 10583337 10583337 C A SOX7 Missense_Mutation p.V412L 0.27 tolerated(0.46) benign(0.047) TCGA-B0-5110-01 8 21985225 21985225 C A HR Nonsense_Mutation p.E244* 0.22 TCGA-B0-5110-01 8 30889379 30889379 C G PURG Missense_Mutation p.W307S 0.35 deleterious(0) probably_damaging(0.999) TCGA-B0-5110-01 8 86047101 86047101 A G LRRCC1 Missense_Mutation p.N663S 0.20 tolerated(0.17) benign(0.009) TCGA-B0-5110-01 9 116132237 116132237 C A BSPRY Missense_Mutation p.H342N 0.22 tolerated(0.36) possibly_damaging(0.552) TCGA-B0-5110-01 9 124906457 124906457 G A NDUFA8 3'UTR 0.06 TCGA-B0-5110-01 9 127619963 127619963 G T WDR38 3'UTR 0.17 TCGA-B0-5110-01 X 151818948 151818948 T C GABRQ Missense_Mutation p.L269P 0.22 deleterious(0) probably_damaging(0.929) TCGA-B0-5110-01 X 18219956 18219956 C G BEND2 Missense_Mutation p.V338L 0.08 tolerated(0.19) benign(0.03) TCGA-B0-5110-01 X 3240485 3240494 TGGAGTGTGT - MXRA5 Frame_Shift_Del p.T1078Efs*22 0.26 TCGA-B0-5110-01 X 90691350 90691350 C T PABPC5 Silent p.D258D 0.26 TCGA-B0-5113-01 10 27303499 27303499 T - ANKRD26 Frame_Shift_Del p.T1550Pfs*11 0.20 TCGA-B0-5113-01 10 69926368 69926368 C A MYPN Missense_Mutation p.P640T 0.25 tolerated(0.09) benign(0.11) TCGA-B0-5113-01 11 5011850 5011850 A G MMP26 Missense_Mutation p.M115V 0.03 deleterious(0.01) benign(0.037) TCGA-B0-5113-01 11 68029634 68029634 G A C11orf24 Missense_Mutation p.P277S 0.27 tolerated(0.51) possibly_damaging(0.803) TCGA-B0-5113-01 11 78412936 78412936 G A TENM4 Silent p.N1574N 0.27 TCGA-B0-5113-01 14 94745003 94745003 C A PPP4R4 3'UTR 0.13 TCGA-B0-5113-01 15 51216161 51216161 G T AP4E1 Missense_Mutation p.S127I 0.13 deleterious(0.02) possibly_damaging(0.739) TCGA-B0-5113-01 15 51217400 51217400 A T AP4E1 Nonsense_Mutation p.K176* 0.36 TCGA-B0-5113-01 16 49313372 49313372 G C CBLN1 Missense_Mutation p.N175K 0.15 deleterious(0.01) possibly_damaging(0.689) TCGA-B0-5113-01 17 3807223 3807223 G A P2RX1 Missense_Mutation p.R175C 0.28 deleterious(0) benign(0.009) TCGA-B0-5113-01 17 6919830 6919830 A G C17orf49 Missense_Mutation p.T79A 0.17 tolerated(0.44) benign(0.06) TCGA-B0-5113-01 17 72832324 72832324 G T TMEM104 Missense_Mutation p.R330L 0.35 tolerated(0.21) benign(0.185) TCGA-B0-5113-01 17 7406478 7406478 G A POLR2A Missense_Mutation p.R932H 0.06 benign(0.189) TCGA-B0-5113-01 17 76677108 76677108 C A CYTH1 Missense_Mutation p.G303V 0.40 deleterious(0) probably_damaging(0.997) TCGA-B0-5113-01 19 50118189 50118189 C T PRR12 Silent p.F1649F 0.23 TCGA-B0-5113-01 19 6501365 6501365 G A TUBB4A Silent p.P70P 0.12 TCGA-B0-5113-01 1 112303111 112303111 T A DDX20 Missense_Mutation p.L194H 0.05 deleterious(0) probably_damaging(1) TCGA-B0-5113-01 1 116233918 116233918 C A VANGL1 Missense_Mutation p.P498Q 0.05 deleterious(0) probably_damaging(1) TCGA-B0-5113-01 1 154962033 154962033 C T FLAD1 Intron 0.31 TCGA-B0-5113-01 1 161141850 161141851 - A B4GALT3 Frame_Shift_Ins p.S313Ffs*33 0.19 TCGA-B0-5113-01 1 196695938 196695938 G A CFH Missense_Mutation p.A702T 0.37 tolerated(0.11) benign(0.134) TCGA-B0-5113-01 1 200014711 200014711 A C NR5A2 Missense_Mutation p.E154D 0.31 deleterious(0.01) benign(0.008) TCGA-B0-5113-01 1 38022628 38022628 C T DNALI1 Silent p.Y33Y 0.27 TCGA-B0-5113-01 1 45484067 45484067 G A ZSWIM5 3'UTR 0.33 TCGA-B0-5113-01 1 65143848 65143848 T C CACHD1 Silent p.C982C 0.21 TCGA-B0-5113-01 1 78045311 78045311 T C ZZZ3 Silent p.K661K 0.17 TCGA-B0-5113-01 1 78383401 78383401 C A NEXN Missense_Mutation p.Q60K 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-B0-5113-01 1 94335473 94335473 G A DNTTIP2 Silent p.I735I 0.28 TCGA-B0-5113-01 20 33875579 33875579 C T FAM83C Missense_Mutation p.V335I 0.37 tolerated(1) benign(0.001) TCGA-B0-5113-01 20 9496942 9496942 A G LAMP5 Missense_Mutation p.R137G 0.32 tolerated(0.07) benign(0.201) TCGA-B0-5113-01 22 36960524 36960524 G A CACNG2 Silent p.T282T 0.26 TCGA-B0-5113-01 22 37770000 37770000 C G ELFN2 Missense_Mutation p.E525D 0.36 tolerated(0.95) benign(0.001) TCGA-B0-5113-01 2 206997774 206997774 C A NDUFS1 Missense_Mutation p.R497I 0.28 deleterious(0) possibly_damaging(0.845) TCGA-B0-5113-01 2 231254640 231254640 G T SP140L Missense_Mutation p.R289I 0.14 deleterious(0) possibly_damaging(0.904) TCGA-B0-5113-01 2 231254641 231254641 A T SP140L Missense_Mutation p.R289S 0.14 deleterious(0) probably_damaging(0.939) TCGA-B0-5113-01 2 74607187 74607187 C A DCTN1 5'UTR 0.27 TCGA-B0-5113-01 2 79314032 79314032 G - REG1B Frame_Shift_Del p.P30Lfs*38 0.29 TCGA-B0-5113-01 3 10191470 10191470 G T VHL Splice_Site p.X155_splice 0.47 TCGA-B0-5113-01 3 52621519 52621519 T - PBRM1 Intron 0.36 TCGA-B0-5113-01 5 137275829 137275829 G T PKD2L2 Missense_Mutation p.R612L 0.25 deleterious_low_confidence(0.05) unknown(0) TCGA-B0-5113-01 5 158603776 158603776 A C RNF145 Missense_Mutation p.L192R 0.16 tolerated(0.39) probably_damaging(0.932) TCGA-B0-5113-01 6 27861305 27861305 C T HIST1H2BO Missense_Mutation p.A22V 0.31 tolerated_low_confidence(0.12) unknown(0) TCGA-B0-5113-01 6 33133477 33133477 G A COL11A2 Silent p.A1447A 0.30 TCGA-B0-5113-01 7 38937718 38937718 G A VPS41 Silent p.S11S 0.06 TCGA-B0-5113-01 8 77766976 77766976 C G ZFHX4 Missense_Mutation p.R2607G 0.19 probably_damaging(0.986) TCGA-B0-5113-01 9 140811700 140811701 - C CACNA1B Frame_Shift_Ins p.V263Rfs*3 0.17 TCGA-B0-5113-01 9 98774946 98774946 A T ERCC6L2 Missense_Mutation p.N344Y 0.31 deleterious(0) benign(0.42) TCGA-B0-5113-01 X 133511613 133511613 A T PHF6 5'UTR 0.08 TCGA-B0-5113-01 X 151815617 151815617 G C GABRQ Missense_Mutation p.R172P 0.27 tolerated(0.16) probably_damaging(0.936) TCGA-B0-5115-01 10 101923759 101923759 A G ERLIN1 Splice_Site p.X219_splice 0.37 TCGA-B0-5115-01 11 117374716 117374716 A T DSCAML1 Missense_Mutation p.Y795N 0.23 deleterious(0.01) possibly_damaging(0.516) TCGA-B0-5115-01 11 117374717 117374717 C G DSCAML1 Missense_Mutation p.Q794H 0.23 deleterious(0.03) probably_damaging(0.944) TCGA-B0-5115-01 11 126284026 126284026 A G ST3GAL4 3'UTR 0.10 TCGA-B0-5115-01 11 129817095 129817095 C T PRDM10 Silent p.T155T 0.22 TCGA-B0-5115-01 12 108920274 108920274 G A SART3 Nonsense_Mutation p.Q658* 0.34 TCGA-B0-5115-01 12 130649146 130649146 C T FZD10 Silent p.S553S 0.23 TCGA-B0-5115-01 12 14943423 14943423 G A WBP11 Missense_Mutation p.P426S 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-B0-5115-01 12 6127588 6127588 G C VWF Missense_Mutation p.L1666V 0.49 deleterious(0.04) benign(0.005) TCGA-B0-5115-01 12 7636081 7636081 C G CD163 Silent p.P990P 0.35 TCGA-B0-5115-01 13 36776196 36776196 G T SOHLH2 Missense_Mutation p.T105N 0.28 deleterious(0) possibly_damaging(0.856) TCGA-B0-5115-01 16 11846601 11846602 TC - ZC3H7A Frame_Shift_Del p.K884Gfs*24 0.26 TCGA-B0-5115-01 16 2161786 2161786 A T PKD1 Missense_Mutation p.S1128T 0.15 benign(0.006) TCGA-B0-5115-01 16 58573749 58573749 G T CNOT1 Missense_Mutation p.L1639I 0.04 tolerated(0.21) benign(0.002) TCGA-B0-5115-01 16 67404969 67404969 C T LRRC36 Silent p.L440L 0.31 TCGA-B0-5115-01 16 67697841 67697841 T G ENKD1 Missense_Mutation p.K193T 0.25 tolerated(0.18) probably_damaging(0.922) TCGA-B0-5115-01 16 74530491 74530491 T C GLG1 Missense_Mutation p.K276E 0.30 deleterious(0.04) benign(0.087) TCGA-B0-5115-01 17 6348680 6348680 G A FAM64A Missense_Mutation p.A84T 0.24 tolerated(0.25) possibly_damaging(0.658) TCGA-B0-5115-01 18 45368211 45368211 G T SMAD2 Nonsense_Mutation p.S464* 0.21 TCGA-B0-5115-01 18 52575020 52575020 G A CCDC68 Missense_Mutation p.T316I 0.31 deleterious(0.02) probably_damaging(0.956) TCGA-B0-5115-01 19 1074667 1074667 T A HMHA1 Missense_Mutation p.F366I 0.17 tolerated(0.3) benign(0.089) TCGA-B0-5115-01 19 12243969 12243969 A T ZNF20 Nonsense_Mutation p.C344* 0.25 TCGA-B0-5115-01 19 22605105 22605105 C T ZNF98 5'UTR 0.22 TCGA-B0-5115-01 19 38609984 38609984 G C SIPA1L3 Missense_Mutation p.G777A 0.26 deleterious(0) probably_damaging(0.971) TCGA-B0-5115-01 19 52538204 52538204 G T ZNF432 Missense_Mutation p.S243Y 0.27 deleterious(0.02) probably_damaging(0.945) TCGA-B0-5115-01 19 53384724 53384724 A C ZNF320 Missense_Mutation p.C219G 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-B0-5115-01 1 143767882 143767882 G A PPIAL4G 5'Flank 0.14 TCGA-B0-5115-01 1 155290610 155290610 T A RUSC1 5'Flank 0.33 TCGA-B0-5115-01 1 236891015 236891015 C T ACTN2 Nonsense_Mutation p.R192* 0.18 TCGA-B0-5115-01 1 39788664 39788664 G A MACF1 Missense_Mutation p.R1412H 0.27 probably_damaging(0.984) TCGA-B0-5115-01 20 49196426 49196426 G T PTPN1 Nonsense_Mutation p.G351* 0.32 TCGA-B0-5115-01 22 18566233 18566233 T G PEX26 Silent p.P134P 0.07 TCGA-B0-5115-01 2 116572463 116572463 T A DPP10 Missense_Mutation p.F603I 0.04 tolerated(0.47) benign(0.035) TCGA-B0-5115-01 2 170177379 170177379 T C LRP2 Missense_Mutation p.H32R 0.31 benign(0.008) TCGA-B0-5115-01 2 192818523 192818523 C G TMEFF2 Missense_Mutation p.D304H 0.26 deleterious(0) possibly_damaging(0.843) TCGA-B0-5115-01 3 10188227 10188227 A - VHL Frame_Shift_Del p.T124Hfs*35 0.33 TCGA-B0-5115-01 3 121097679 121097679 C T STXBP5L Nonsense_Mutation p.R789* 0.32 TCGA-B0-5115-01 3 180322346 180322346 G C TTC14 Missense_Mutation p.G218R 0.25 tolerated(0.6) benign(0.147) TCGA-B0-5115-01 3 180322347 180322347 G T TTC14 Missense_Mutation p.G218V 0.25 tolerated(0.45) benign(0.196) TCGA-B0-5115-01 3 52662984 52662984 C A PBRM1 Nonsense_Mutation p.E457* 0.40 TCGA-B0-5115-01 3 98216592 98216593 TG A OR5K2 Frame_Shift_Del p.L23Qfs*14 0.15 TCGA-B0-5115-01 4 106157368 106157368 C G TET2 Missense_Mutation p.L757V 0.27 deleterious(0.01) benign(0.04) TCGA-B0-5115-01 4 113360933 113360933 T C ALPK1 Missense_Mutation p.V1148A 0.41 tolerated(0.06) possibly_damaging(0.759) TCGA-B0-5115-01 4 95194869 95194869 T - SMARCAD1 Splice_Site p.X558_splice 0.27 TCGA-B0-5115-01 5 11346669 11346676 GGCATTCT - CTNND2 Frame_Shift_Del p.Q479Rfs*32 0.68 TCGA-B0-5115-01 5 114499350 114499350 T A TRIM36 Nonsense_Mutation p.K55* 0.20 TCGA-B0-5115-01 5 147040551 147040551 G A JAKMIP2 Missense_Mutation p.S196L 0.24 deleterious(0.04) benign(0.039) TCGA-B0-5115-01 5 147444913 147444913 C T SPINK5 Missense_Mutation p.A20V 0.25 deleterious(0) benign(0.315) TCGA-B0-5115-01 5 156565914 156565914 G T MED7 Missense_Mutation p.H177N 0.23 tolerated(0.49) benign(0) TCGA-B0-5115-01 5 52363017 52363017 G T ITGA2 Missense_Mutation p.K671N 0.55 deleterious(0) probably_damaging(0.998) TCGA-B0-5115-01 5 5464188 5464188 A T KIAA0947 Missense_Mutation p.S1581C 0.25 tolerated(0.1) benign(0.052) TCGA-B0-5115-01 6 30308093 30308093 C T TRIM39 Missense_Mutation p.P283L 0.34 tolerated_low_confidence(0.17) possibly_damaging(0.713) TCGA-B0-5115-01 6 31475252 31475252 T A MICB Missense_Mutation p.I323N 0.31 deleterious(0.04) possibly_damaging(0.861) TCGA-B0-5115-01 6 32097079 32097079 A C FKBPL Missense_Mutation p.I160R 0.30 deleterious(0.01) benign(0.154) TCGA-B0-5115-01 6 33286892 33286892 G C DAXX Missense_Mutation p.S682C 0.26 deleterious(0) probably_damaging(0.993) TCGA-B0-5115-01 6 41712242 41712242 A C PGC Missense_Mutation p.F74C 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-B0-5115-01 7 144077075 144077075 G T ARHGEF5 Missense_Mutation p.V1574F 0.45 deleterious(0) probably_damaging(0.968) TCGA-B0-5115-01 7 2645633 2645633 T A IQCE Splice_Site p.X622_splice 0.22 TCGA-B0-5115-01 7 77379172 77379172 A - RSBN1L Frame_Shift_Del p.R379Gfs*9 0.29 TCGA-B0-5115-01 8 22423910 22423910 G T SORBS3 Missense_Mutation p.A335S 0.27 tolerated(1) benign(0) TCGA-B0-5115-01 8 96275957 96275962 AATAAG - C8orf37 In_Frame_Del p.L66_I67del 0.21 TCGA-B0-5115-01 9 34241773 34241773 C G UBAP1 Silent p.S314S 0.20 TCGA-B0-5115-01 9 35738845 35738845 C - GBA2 Frame_Shift_Del p.W617* 0.17 TCGA-B0-5115-01 X 101911040 101911041 - G GPRASP1 Frame_Shift_Ins p.T735Dfs*10 0.45 TCGA-B0-5116-01 10 95415548 95415548 G A PDE6C Missense_Mutation p.R656Q 0.17 tolerated(0.07) benign(0.046) TCGA-B0-5116-01 11 119182813 119182813 G - MCAM Frame_Shift_Del p.C365Vfs*14 0.18 TCGA-B0-5116-01 11 3797144 3797144 C G NUP98 Missense_Mutation p.A155P 0.21 deleterious(0.03) possibly_damaging(0.766) TCGA-B0-5116-01 11 5475160 5475160 G A OR51I2 Missense_Mutation p.A148T 0.21 deleterious(0.04) benign(0.021) TCGA-B0-5116-01 11 57156096 57156096 G A PRG2 Missense_Mutation p.A151V 0.03 tolerated(0.52) benign(0.001) TCGA-B0-5116-01 11 71260168 71260168 C A KRTAP5-9 Silent p.S155S 0.18 TCGA-B0-5116-01 11 8948498 8948498 T A C11orf16 Missense_Mutation p.D183V 0.34 deleterious(0) possibly_damaging(0.737) TCGA-B0-5116-01 12 104390596 104390596 A G GLT8D2 Silent p.L173L 0.40 TCGA-B0-5116-01 12 109530325 109530325 T A ALKBH2 Silent p.V89V 0.40 TCGA-B0-5116-01 12 109530381 109530381 C T ALKBH2 Missense_Mutation p.V71I 0.33 tolerated(0.43) benign(0.001) TCGA-B0-5116-01 12 34179296 34179315 CAACTATTCTACTTTTTTTC A ALG10 Frame_Shift_Del p.Q290Nfs*23 0.20 TCGA-B0-5116-01 12 53900526 53900526 G A RP11-793H13.10 3'UTR 0.26 TCGA-B0-5116-01 12 81675111 81675111 A G PPFIA2 Missense_Mutation p.V1046A 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-B0-5116-01 12 8998670 8998670 C T A2ML1 Intron 0.12 TCGA-B0-5116-01 14 20344686 20344686 C G OR4K2 Missense_Mutation p.T87R 0.13 tolerated(1) benign(0.003) TCGA-B0-5116-01 14 20403917 20403917 T C OR4K1 Missense_Mutation p.F31S 0.10 tolerated(0.08) probably_damaging(0.998) TCGA-B0-5116-01 14 63447836 63447836 A T KCNH5 Silent p.V232V 0.21 TCGA-B0-5116-01 14 69589045 69589045 T C DCAF5 Missense_Mutation p.M83V 0.19 tolerated(0.39) benign(0) TCGA-B0-5116-01 15 42147094 42147094 C T SPTBN5 Silent p.L3168L 0.28 TCGA-B0-5116-01 15 50833303 50833303 G A USP50 Silent p.N201N 0.07 TCGA-B0-5116-01 15 69006276 69006276 A - CORO2B Frame_Shift_Del p.N222Tfs*4 0.41 TCGA-B0-5116-01 15 91450577 91450577 C A MAN2A2 Missense_Mutation p.P350T 0.04 deleterious(0) probably_damaging(0.933) TCGA-B0-5116-01 16 2373508 2373508 T C ABCA3 Intron 0.21 TCGA-B0-5116-01 16 24551961 24551962 - T RBBP6 Frame_Shift_Ins p.Y6Lfs*2 0.23 TCGA-B0-5116-01 16 56904064 56904064 G T SLC12A3 Missense_Mutation p.G220C 0.32 deleterious(0) probably_damaging(1) TCGA-B0-5116-01 17 15516051 15516051 C T RP11-385D13.1 Missense_Mutation p.M672I 0.09 tolerated_low_confidence(1) benign(0.003) TCGA-B0-5116-01 17 26942001 26942001 C T KIAA0100 3'UTR 0.21 TCGA-B0-5116-01 17 27001299 27001300 - GAT SUPT6H Splice_Site p.X37_splice 0.30 TCGA-B0-5116-01 17 40458350 40458350 A G STAT5A Missense_Mutation p.N522S 0.05 tolerated(0.32) benign(0) TCGA-B0-5116-01 17 56620725 56620725 G A C17orf47 Missense_Mutation p.L275F 0.42 tolerated(0.14) benign(0.003) TCGA-B0-5116-01 19 33587347 33587347 G - GPATCH1 Frame_Shift_Del p.G283Afs*6 0.11 TCGA-B0-5116-01 19 34263556 34263556 T A CHST8 Missense_Mutation p.L288Q 0.28 deleterious(0) benign(0.096) TCGA-B0-5116-01 19 36054147 36054147 C T ATP4A Silent p.A60A 0.37 TCGA-B0-5116-01 19 45515352 45515352 G T RELB Missense_Mutation p.G108C 0.62 deleterious(0.01) benign(0.319) TCGA-B0-5116-01 19 5783360 5783364 AGGCG C PRR22 Frame_Shift_Del p.A299Lfs*? 0.12 TCGA-B0-5116-01 19 9077024 9077024 G A MUC16 Silent p.L3474L 0.16 TCGA-B0-5116-01 19 9720930 9720930 T A ZNF561 Missense_Mutation p.R469S 0.24 deleterious(0) benign(0.228) TCGA-B0-5116-01 1 156256083 156256083 T - TMEM79 Frame_Shift_Del p.S265Lfs*61 0.20 TCGA-B0-5116-01 1 184023905 184023905 C A TSEN15 Silent p.L87L 0.37 TCGA-B0-5116-01 1 201010703 201010703 C G CACNA1S Missense_Mutation p.R1688T 0.16 tolerated_low_confidence(0.12) benign(0.034) TCGA-B0-5116-01 1 232942950 232942950 G C MAP10 Missense_Mutation p.E727D 0.58 tolerated(0.75) benign(0.001) TCGA-B0-5116-01 1 39823255 39823255 A G MACF1 Missense_Mutation p.E1816G 0.26 probably_damaging(0.999) TCGA-B0-5116-01 1 70781173 70781173 G C ANKRD13C Silent p.A218A 0.13 TCGA-B0-5116-01 20 3028493 3028493 G C MRPS26 Missense_Mutation p.R199T 0.40 tolerated(0.07) benign(0.043) TCGA-B0-5116-01 20 33508376 33508376 A G ACSS2 Missense_Mutation p.Y349C 0.34 deleterious(0) probably_damaging(0.992) TCGA-B0-5116-01 20 36634747 36634747 T C TTI1 Silent p.L785L 0.30 TCGA-B0-5116-01 21 33642768 33642768 A C MIS18A Missense_Mutation p.N158K 0.36 tolerated(0.16) benign(0.054) TCGA-B0-5116-01 21 45950936 45950936 C A TSPEAR Missense_Mutation p.G208V 0.08 deleterious(0) probably_damaging(0.992) TCGA-B0-5116-01 2 179587658 179587658 G C TTN Missense_Mutation p.P7323R 0.17 TCGA-B0-5116-01 2 182430234 182430234 C - CERKL Frame_Shift_Del p.H228Ifs*22 0.17 TCGA-B0-5116-01 2 29383260 29383260 C T CLIP4 Silent p.L487L 0.24 TCGA-B0-5116-01 2 75278449 75278449 G T TACR1 Nonsense_Mutation p.Y287* 0.34 TCGA-B0-5116-01 2 75278450 75278450 T A TACR1 Missense_Mutation p.Y287F 0.35 deleterious(0.03) possibly_damaging(0.849) TCGA-B0-5116-01 3 122180079 122180083 TACAA - KPNA1 Frame_Shift_Del p.C141Tfs*4 0.14 TCGA-B0-5116-01 3 125828895 125828895 C T ALDH1L1 Missense_Mutation p.G757R 0.68 deleterious(0) probably_damaging(0.999) TCGA-B0-5116-01 3 130992364 130992364 G A NEK11 Missense_Mutation p.G555E 0.18 deleterious(0.04) benign(0.038) TCGA-B0-5116-01 3 52643368 52643389 TGCTCTTGAAATAAATCAAGCC - PBRM1 Frame_Shift_Del p.R836Lfs*12 0.42 TCGA-B0-5116-01 4 143081662 143081662 A - INPP4B Frame_Shift_Del p.L471* 0.34 TCGA-B0-5116-01 4 57798103 57798103 A G REST Missense_Mutation p.S1027G 0.33 deleterious(0) probably_damaging(0.935) TCGA-B0-5116-01 4 95583632 95583632 G A PDLIM5 Missense_Mutation p.D578N 0.23 deleterious(0) probably_damaging(1) TCGA-B0-5116-01 5 138643267 138643267 T C MATR3 Silent p.L55L 0.38 TCGA-B0-5116-01 5 178139045 178139045 C A ZNF354A 3'UTR 0.20 TCGA-B0-5116-01 6 114279865 114279865 T C HDAC2 Silent p.L77L 0.04 TCGA-B0-5116-01 6 128318044 128318044 A G PTPRK Splice_Site p.X923_splice 0.15 TCGA-B0-5116-01 6 128318045 128318045 C T PTPRK Splice_Site p.X923_splice 0.14 TCGA-B0-5116-01 6 135253987 135253987 G C ALDH8A1 Missense_Mutation p.P259R 0.24 deleterious(0) probably_damaging(0.993) TCGA-B0-5116-01 6 30951660 30951660 T G MUC21 5'UTR 0.42 TCGA-B0-5116-01 7 106508218 106508218 A T PIK3CG Missense_Mutation p.K71M 0.41 deleterious(0) possibly_damaging(0.779) TCGA-B0-5116-01 7 120773891 120773891 A C CPED1 Missense_Mutation p.E531A 0.36 tolerated(0.14) benign(0.058) TCGA-B0-5116-01 7 130021569 130021569 C T CPA1 Silent p.H82H 0.06 TCGA-B0-5116-01 7 4824670 4824670 A C AP5Z1 Missense_Mutation p.S308R 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-B0-5116-01 7 55269438 55269438 G A EGFR Missense_Mutation p.S1042N 0.32 tolerated(0.08) probably_damaging(0.995) TCGA-B0-5116-01 7 94881092 94881092 A T PPP1R9A Missense_Mutation p.K805N 0.27 deleterious(0) probably_damaging(0.962) TCGA-B0-5116-01 8 30492585 30492585 C G GTF2E2 Missense_Mutation p.K74N 0.33 tolerated(0.16) benign(0.219) TCGA-B0-5116-01 9 102731031 102731031 T - STX17 3'UTR 0.29 TCGA-B0-5116-01 9 115932898 115932898 G T FKBP15 Silent p.I890I 0.25 TCGA-B0-5116-01 9 139793239 139793245 AGCCCGG - TRAF2 Frame_Shift_Del p.Q16Pfs*68 0.39 TCGA-B0-5116-01 X 129499647 129499647 A C SLC25A14 Missense_Mutation p.L284F 0.34 tolerated(0.23) benign(0.098) TCGA-B0-5116-01 X 133379666 133379666 G T CCDC160 Missense_Mutation p.S279I 0.78 deleterious(0) possibly_damaging(0.607) TCGA-B0-5116-01 X 140995587 140995587 G C MAGEC1 Missense_Mutation p.Q799H 0.23 deleterious_low_confidence(0) benign(0.216) TCGA-B0-5117-01 10 112358023 112358023 A C SMC3 Missense_Mutation p.Q748P 0.48 tolerated(0.22) possibly_damaging(0.707) TCGA-B0-5117-01 10 119798885 119798885 C G RAB11FIP2 Missense_Mutation p.S288T 0.04 tolerated(0.42) benign(0.022) TCGA-B0-5117-01 12 124856836 124856837 - G NCOR2 Frame_Shift_Ins p.A847Rfs*3 0.45 TCGA-B0-5117-01 12 27787945 27787945 G T PPFIBP1 Missense_Mutation p.R56L 0.05 deleterious(0) probably_damaging(0.988) TCGA-B0-5117-01 12 50831576 50831580 TTGTA - LARP4 Frame_Shift_Del p.I200Nfs*3 0.30 TCGA-B0-5117-01 13 23869612 23869612 G T SGCG Silent p.P188P 0.31 TCGA-B0-5117-01 13 52676276 52676276 C G NEK5 Missense_Mutation p.L254F 0.03 deleterious(0) probably_damaging(1) TCGA-B0-5117-01 15 65667723 65667723 C A IGDCC3 Nonsense_Mutation p.E41* 0.09 TCGA-B0-5117-01 16 31308843 31308843 C A ITGAM Silent p.A455A 0.03 TCGA-B0-5117-01 17 6941493 6941493 C T SLC16A13 Silent p.F122F 0.52 TCGA-B0-5117-01 17 7578272 7578272 G A TP53 Missense_Mutation p.H193Y 0.52 deleterious(0) probably_damaging(1) TCGA-B0-5117-01 22 30163417 30163417 G A UQCR10 Silent p.L10L 0.33 TCGA-B0-5117-01 22 45740297 45740297 C G SMC1B 3'UTR 0.08 TCGA-B0-5117-01 2 28531467 28531467 T G BRE Intron 0.38 TCGA-B0-5117-01 3 53911743 53911743 A C ACTR8 Missense_Mutation p.I147M 0.36 tolerated(0.09) possibly_damaging(0.49) TCGA-B0-5117-01 4 169108555 169108555 C A ANXA10 Silent p.A315A 0.23 TCGA-B0-5117-01 4 7056535 7056535 C T TADA2B Silent p.F339F 0.05 TCGA-B0-5117-01 6 51929825 51929825 C T PKHD1 Missense_Mutation p.V302M 0.42 deleterious(0.02) possibly_damaging(0.793) TCGA-B0-5117-01 7 100682390 100682390 C A MUC17 Missense_Mutation p.P2565T 0.31 possibly_damaging(0.637) TCGA-B0-5117-01 8 41529890 41529890 G A ANK1 Missense_Mutation p.T1734M 0.07 tolerated_low_confidence(0.77) benign(0.004) TCGA-B0-5117-01 8 61767019 61767019 C A CHD7 Missense_Mutation p.D2291E 0.03 probably_damaging(0.984) TCGA-B0-5117-01 9 136573487 136573487 G A SARDH Silent p.Y464Y 0.09 TCGA-B0-5117-01 X 49028442 49028443 - G PLP2 Frame_Shift_Ins p.I32Mfs*25 0.57 TCGA-B0-5119-01 10 22002761 22002761 C T MLLT10 Missense_Mutation p.S587F 0.33 deleterious(0.03) possibly_damaging(0.736) TCGA-B0-5119-01 10 60558280 60558280 A G BICC1 Silent p.T496T 0.27 TCGA-B0-5119-01 10 74673124 74673124 T C OIT3 Silent p.G283G 0.34 TCGA-B0-5119-01 10 75003130 75003130 C A DNAJC9 3'UTR 0.29 TCGA-B0-5119-01 11 111624212 111624212 G T PPP2R1B Silent p.T373T 0.35 TCGA-B0-5119-01 11 32610272 32610272 T C EIF3M Missense_Mutation p.L103P 0.31 deleterious(0) probably_damaging(0.926) TCGA-B0-5119-01 11 36680650 36680650 C T C11orf74 Missense_Mutation p.P194S 0.33 tolerated(0.47) benign(0.015) TCGA-B0-5119-01 11 68312471 68312471 T C PPP6R3 Silent p.L131L 0.32 TCGA-B0-5119-01 12 114352885 114352885 G A RBM19 Missense_Mutation p.A816V 0.03 tolerated(0.11) benign(0.015) TCGA-B0-5119-01 12 117703219 117703219 C T NOS1 Missense_Mutation p.D680N 0.44 deleterious(0) probably_damaging(0.969) TCGA-B0-5119-01 12 124272412 124272412 A T DNAH10 Nonsense_Mutation p.K434* 0.21 TCGA-B0-5119-01 12 133435664 133435664 C T CHFR Missense_Mutation p.D313N 0.35 deleterious(0) possibly_damaging(0.481) TCGA-B0-5119-01 12 51384633 51384636 AATG - SLC11A2 Frame_Shift_Del p.A535Dfs*24 0.35 TCGA-B0-5119-01 12 91545456 91545456 C A DCN Missense_Mutation p.G287V 0.27 tolerated(0.06) probably_damaging(0.978) TCGA-B0-5119-01 13 31232080 31232081 CA - USPL1 Frame_Shift_Del p.N623Yfs*18 0.39 TCGA-B0-5119-01 13 46919734 46919734 C A KIAA0226L Missense_Mutation p.A545S 0.45 deleterious(0.03) possibly_damaging(0.507) TCGA-B0-5119-01 13 61985426 61985426 T - PCDH20 Frame_Shift_Del p.I936Lfs*30 0.29 TCGA-B0-5119-01 13 61985497 61985497 C G PCDH20 Missense_Mutation p.C912S 0.15 tolerated(0.1) probably_damaging(0.94) TCGA-B0-5119-01 13 73309117 73309117 G C BORA Missense_Mutation p.D94H 0.32 deleterious(0) probably_damaging(0.988) TCGA-B0-5119-01 14 100847489 100847489 T A WDR25 Nonsense_Mutation p.Y76* 0.39 TCGA-B0-5119-01 14 33292027 33292027 G T AKAP6 Missense_Mutation p.G1670C 0.22 deleterious(0) probably_damaging(1) TCGA-B0-5119-01 14 33292028 33292028 G T AKAP6 Missense_Mutation p.G1670V 0.22 deleterious(0.04) probably_damaging(1) TCGA-B0-5119-01 15 30012148 30012148 T A TJP1 Missense_Mutation p.N946Y 0.32 deleterious_low_confidence(0) benign(0.24) TCGA-B0-5119-01 15 40993342 40993342 A T RAD51 Silent p.P56P 0.34 TCGA-B0-5119-01 15 52510811 52510811 C T MYO5C Missense_Mutation p.E1287K 0.30 tolerated(0.11) benign(0.003) TCGA-B0-5119-01 15 74363361 74363361 G T GOLGA6A Missense_Mutation p.L658M 0.23 deleterious(0) probably_damaging(0.988) TCGA-B0-5119-01 15 89382024 89382024 C G ACAN Silent p.A67A 0.32 TCGA-B0-5119-01 16 1552946 1552946 G T TELO2 Silent p.L595L 0.30 TCGA-B0-5119-01 16 19576270 19576270 A C C16orf62 Missense_Mutation p.T128P 0.35 deleterious(0.01) possibly_damaging(0.731) TCGA-B0-5119-01 16 20851655 20851655 G T AC004381.6 Missense_Mutation p.M497I 0.26 deleterious(0.04) benign(0.008) TCGA-B0-5119-01 16 46652119 46652119 A - SHCBP1 Frame_Shift_Del p.L90* 0.30 TCGA-B0-5119-01 16 4903144 4903144 A C UBN1 Missense_Mutation p.K76Q 0.29 deleterious(0.04) benign(0.088) TCGA-B0-5119-01 16 89616935 89616935 A - SPG7 Frame_Shift_Del p.E567Nfs*25 0.33 TCGA-B0-5119-01 17 1582621 1582621 G A PRPF8 Missense_Mutation p.A458V 0.35 tolerated(0.14) benign(0.005) TCGA-B0-5119-01 17 35609856 35609856 T C ACACA Missense_Mutation p.I645V 0.03 deleterious(0.02) possibly_damaging(0.902) TCGA-B0-5119-01 17 38574074 38574074 T C TOP2A 5'UTR 0.38 TCGA-B0-5119-01 17 48652948 48652948 C T CACNA1G Silent p.A395A 0.25 TCGA-B0-5119-01 17 60757631 60757631 G A MRC2 Missense_Mutation p.C800Y 0.26 deleterious(0) probably_damaging(1) TCGA-B0-5119-01 17 62006561 62006561 C T CD79B 3'UTR 0.34 TCGA-B0-5119-01 17 65987984 65987984 C A C17orf58 3'UTR 0.23 TCGA-B0-5119-01 17 73624786 73624786 T A RECQL5 Missense_Mutation p.D849V 0.34 tolerated(0.07) benign(0.045) TCGA-B0-5119-01 18 12264452 12264452 G A CIDEA Silent p.P110P 0.06 TCGA-B0-5119-01 18 29207086 29207086 T G B4GALT6 Splice_Site p.X259_splice 0.31 TCGA-B0-5119-01 18 29444658 29444658 T - TRAPPC8 Frame_Shift_Del p.T893Hfs*11 0.23 TCGA-B0-5119-01 19 1220429 1220429 C T STK11 Silent p.H174H 0.24 TCGA-B0-5119-01 19 23329223 23329223 A T ZNF730 Missense_Mutation p.K459N 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-B0-5119-01 19 39664492 39664492 C A PAK4 Missense_Mutation p.P314T 0.19 deleterious(0.03) benign(0.357) TCGA-B0-5119-01 19 4171691 4171691 G A CREB3L3 Missense_Mutation p.V371M 0.04 deleterious(0) probably_damaging(0.998) TCGA-B0-5119-01 19 47177845 47177845 C G PRKD2 Missense_Mutation p.G858R 0.31 tolerated_low_confidence(0.14) possibly_damaging(0.58) TCGA-B0-5119-01 19 53453353 53453353 G A ZNF816 Missense_Mutation p.H559Y 0.30 deleterious(0.01) possibly_damaging(0.622) TCGA-B0-5119-01 19 55693237 55693237 C T PTPRH Missense_Mutation p.R1078Q 0.28 benign(0.256) TCGA-B0-5119-01 19 57765250 57765250 A T ZNF805 Nonsense_Mutation p.R355* 0.30 TCGA-B0-5119-01 19 8592225 8592225 A T MYO1F Missense_Mutation p.L824H 0.14 deleterious(0) probably_damaging(0.992) TCGA-B0-5119-01 19 9225524 9225524 C A OR7G1 Missense_Mutation p.G306C 0.31 tolerated(0.06) benign(0.004) TCGA-B0-5119-01 19 9226001 9226001 G C OR7G1 Missense_Mutation p.L147V 0.33 tolerated(0.23) benign(0.052) TCGA-B0-5119-01 1 11291426 11291426 C A MTOR Missense_Mutation p.K860N 0.04 deleterious(0.04) possibly_damaging(0.723) TCGA-B0-5119-01 1 115829228 115829228 C A NGF Silent p.V63V 0.42 TCGA-B0-5119-01 1 183835159 183835159 A G RGL1 Missense_Mutation p.E161G 0.29 tolerated(0.23) benign(0.009) TCGA-B0-5119-01 1 201489310 201489311 - T RPS10P7 RNA 0.33 TCGA-B0-5119-01 1 204380314 204380314 C A PPP1R15B Nonsense_Mutation p.G76* 0.24 TCGA-B0-5119-01 1 205069187 205069187 G T RBBP5 Missense_Mutation p.P253Q 0.37 tolerated(0.75) probably_damaging(0.996) TCGA-B0-5119-01 1 214510074 214510074 G A SMYD2 Missense_Mutation p.G417S 0.31 deleterious(0) probably_damaging(0.949) TCGA-B0-5119-01 1 227174152 227174152 A T ADCK3 Splice_Site p.X554_splice 0.29 TCGA-B0-5119-01 1 237947660 237947660 G A RYR2 Silent p.A4216A 0.05 TCGA-B0-5119-01 1 36563552 36563552 A C COL8A2 Missense_Mutation p.F577C 0.27 deleterious(0) probably_damaging(0.999) TCGA-B0-5119-01 20 23666496 23666496 G A CST4 3'UTR 0.42 TCGA-B0-5119-01 20 56140707 56140709 CAA - PCK1 In_Frame_Del p.N573del 0.30 TCGA-B0-5119-01 21 47424005 47424005 G A COL6A1 3'UTR 0.07 TCGA-B0-5119-01 22 21152931 21152931 A C PI4KA Missense_Mutation p.S683R 0.33 deleterious(0) possibly_damaging(0.84) TCGA-B0-5119-01 22 25131751 25131754 TGTG - PIWIL3 Frame_Shift_Del p.H519Efs*6 0.38 TCGA-B0-5119-01 22 40742638 40742638 A C ADSL Missense_Mutation p.M26L 0.20 deleterious(0.01) benign(0.296) TCGA-B0-5119-01 22 46807519 46807519 G T CELSR1 Silent p.G1583G 0.37 TCGA-B0-5119-01 2 128481936 128481937 - AT WDR33 Frame_Shift_Ins p.L390Ffs*29 0.29 TCGA-B0-5119-01 2 1440117 1440117 C A TPO Missense_Mutation p.A148E 0.29 deleterious(0.01) possibly_damaging(0.887) TCGA-B0-5119-01 2 240969462 240969463 - CAGCGGGTGGCA OR6B2 In_Frame_Ins p.H128_P129insCHPL 0.09 TCGA-B0-5119-01 2 25973133 25973136 CACT - ASXL2 Frame_Shift_Del p.E430Vfs*91 0.34 TCGA-B0-5119-01 2 29221046 29221048 CAT - FAM179A In_Frame_Del p.I23del 0.33 TCGA-B0-5119-01 2 61020826 61020826 C T PAPOLG Missense_Mutation p.L582F 0.29 tolerated(0.31) benign(0.391) TCGA-B0-5119-01 3 120130797 120130797 T G FSTL1 Missense_Mutation p.S68R 0.32 deleterious(0) probably_damaging(0.999) TCGA-B0-5119-01 3 130293169 130293169 A - COL6A6 Frame_Shift_Del p.D1116Afs*10 0.26 TCGA-B0-5119-01 3 145820619 145820619 C G PLOD2 Missense_Mutation p.E234Q 0.26 deleterious(0.03) possibly_damaging(0.848) TCGA-B0-5119-01 3 169492076 169492076 A G MYNN 5'UTR 0.29 TCGA-B0-5119-01 3 174815003 174815003 C G NAALADL2 Missense_Mutation p.S156C 0.33 deleterious(0.03) possibly_damaging(0.572) TCGA-B0-5119-01 3 43618354 43618354 T C ANO10 Missense_Mutation p.Y331C 0.55 deleterious(0.03) benign(0.034) TCGA-B0-5119-01 3 52649433 52649437 CCTTG ATA PBRM1 Frame_Shift_Del p.K619Ifs*11 0.43 TCGA-B0-5119-01 4 4304210 4304210 T G ZBTB49 Missense_Mutation p.L216R 0.31 deleterious(0) probably_damaging(1) TCGA-B0-5119-01 5 132158730 132158730 C T SHROOM1 Missense_Mutation p.V773M 0.20 deleterious(0) benign(0.023) TCGA-B0-5119-01 5 133944073 133944073 T A SAR1B Missense_Mutation p.T157S 0.26 tolerated(0.09) benign(0.282) TCGA-B0-5119-01 5 38963027 38963027 T - RICTOR Frame_Shift_Del p.Q506Rfs*24 0.31 TCGA-B0-5119-01 5 76028881 76028881 C A F2R Silent p.V277V 0.29 TCGA-B0-5119-01 6 128150971 128150971 T C THEMIS Missense_Mutation p.Q120R 0.50 tolerated(0.53) benign(0.006) TCGA-B0-5119-01 6 129833510 129833510 G C LAMA2 Missense_Mutation p.G2954R 0.04 tolerated(0.34) possibly_damaging(0.666) TCGA-B0-5119-01 6 167453552 167453552 A - FGFR1OP 3'UTR 0.48 TCGA-B0-5119-01 6 29012082 29012082 T A OR2W1 Missense_Mutation p.T291S 0.28 tolerated(0.05) benign(0.345) TCGA-B0-5119-01 6 29550080 29550080 G A SNORD32B RNA 0.45 TCGA-B0-5119-01 6 33639879 33639879 C T ITPR3 Silent p.S934S 0.26 TCGA-B0-5119-01 6 36652157 36652157 G C CDKN1A Missense_Mutation p.R93S 0.23 tolerated(0.18) benign(0.058) TCGA-B0-5119-01 7 121651278 121651278 T C PTPRZ1 Silent p.H726H 0.06 TCGA-B0-5119-01 8 100847774 100847774 A G VPS13B Silent p.P3275P 0.31 TCGA-B0-5119-01 8 101153402 101153402 C - FBXO43 Frame_Shift_Del p.K361Nfs*12 0.29 TCGA-B0-5119-01 8 18490155 18490155 C T PSD3 Missense_Mutation p.R793Q 0.28 deleterious(0) probably_damaging(0.983) TCGA-B0-5119-01 8 32505280 32505280 G C NRG1 Intron 0.30 TCGA-B0-5119-01 8 67578932 67578932 C A VCPIP1 Missense_Mutation p.V88L 0.33 tolerated(0.08) benign(0.442) TCGA-B0-5119-01 8 67578933 67578933 C G VCPIP1 Missense_Mutation p.E87D 0.33 deleterious(0.01) probably_damaging(0.968) TCGA-B0-5119-01 8 70512843 70512843 C G SULF1 Missense_Mutation p.P247R 0.33 deleterious(0.04) probably_damaging(0.998) TCGA-B0-5119-01 8 90937648 90937648 A G OSGIN2 Missense_Mutation p.N513S 0.06 deleterious(0.03) possibly_damaging(0.775) TCGA-B0-5119-01 9 133914596 133914596 G C LAMC3 Missense_Mutation p.C415S 0.18 deleterious(0) probably_damaging(0.982) TCGA-B0-5119-01 9 136401894 136401894 A G ADAMTSL2 Silent p.V20V 0.03 TCGA-B0-5119-01 9 137990174 137990174 G C OLFM1 Missense_Mutation p.V149L 0.34 tolerated(0.14) benign(0.417) TCGA-B0-5119-01 X 119504657 119504657 G A ATP1B4 Missense_Mutation p.S139N 0.29 tolerated(0.16) possibly_damaging(0.606) TCGA-B0-5119-01 X 151870276 151870276 C A MAGEA6 3'UTR 0.30 TCGA-B0-5119-01 X 153278782 153278782 C T IRAK1 Missense_Mutation p.V548M 0.37 tolerated(0.59) benign(0.036) TCGA-B0-5119-01 X 1712876 1712876 T C AKAP17A Missense_Mutation p.L174P 0.25 deleterious(0) probably_damaging(0.991) TCGA-B0-5119-01 X 52896107 52896107 G T XAGE3 Missense_Mutation p.P20T 0.03 tolerated(0.08) probably_damaging(0.975) TCGA-B0-5120-01 10 100018882 100018882 G C LOXL4 Missense_Mutation p.R269G 0.30 tolerated(0.21) benign(0.004) TCGA-B0-5120-01 10 119049791 119049791 C A PDZD8 Silent p.G389G 0.18 TCGA-B0-5120-01 10 18168649 18168649 G A MRC1 Splice_Site p.X873_splice 0.58 TCGA-B0-5120-01 10 55569221 55569221 G T PCDH15 Missense_Mutation p.P464Q 0.05 deleterious_low_confidence(0) unknown(0) TCGA-B0-5120-01 11 113295088 113295088 C T DRD2 Splice_Site p.X95_splice 0.29 TCGA-B0-5120-01 11 60164109 60164109 G C MS4A14 Missense_Mutation p.E20Q 0.19 tolerated(0.05) possibly_damaging(0.494) TCGA-B0-5120-01 11 63057715 63057715 C G SLC22A10 Silent p.P26P 0.20 TCGA-B0-5120-01 12 42748967 42748967 A T PPHLN1 Missense_Mutation p.E81V 0.22 deleterious(0.01) possibly_damaging(0.477) TCGA-B0-5120-01 12 48516579 48516579 G C PFKM Missense_Mutation p.A79P 0.13 tolerated(0.32) benign(0.003) TCGA-B0-5120-01 12 53819616 53819616 C A AMHR2 Missense_Mutation p.D255E 0.26 tolerated(0.23) possibly_damaging(0.739) TCGA-B0-5120-01 12 7967026 7967026 C A SLC2A14 Missense_Mutation p.E483D 0.24 tolerated(0.39) benign(0.157) TCGA-B0-5120-01 12 8074123 8074123 C A SLC2A3 Missense_Mutation p.E459D 0.08 tolerated(0.39) possibly_damaging(0.572) TCGA-B0-5120-01 12 9098098 9098098 C A M6PR Missense_Mutation p.G87W 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-B0-5120-01 13 42729429 42729429 C T DGKH Silent p.I129I 0.05 TCGA-B0-5120-01 14 105225849 105225849 C G SIVA1 3'UTR 0.15 TCGA-B0-5120-01 15 76073205 76073205 C T RN7SL319P 5'Flank 0.34 TCGA-B0-5120-01 15 81633742 81633742 A G TMC3 Silent p.F611F 0.13 TCGA-B0-5120-01 16 12136850 12136850 G T SNX29 Missense_Mutation p.G115V 0.24 deleterious(0) benign(0.41) TCGA-B0-5120-01 16 58622799 58622799 C T CNOT1 Silent p.R38R 0.07 TCGA-B0-5120-01 16 66612797 66612797 A G CMTM1 Missense_Mutation p.R252G 0.28 deleterious(0) probably_damaging(0.977) TCGA-B0-5120-01 17 1648687 1648687 C T SERPINF2 Nonsense_Mutation p.Q55* 0.20 TCGA-B0-5120-01 17 1964808 1964808 A G SMG6 Missense_Mutation p.L1413P 0.33 deleterious(0) probably_damaging(0.996) TCGA-B0-5120-01 17 67186562 67186562 A - ABCA10 Frame_Shift_Del p.S690Qfs*2 0.24 TCGA-B0-5120-01 17 72613604 72613604 C G CD300E Missense_Mutation p.G14A 0.29 deleterious(0.01) unknown(0) TCGA-B0-5120-01 17 7404417 7404417 C - POLR2A Frame_Shift_Del p.L681Sfs*33 0.25 TCGA-B0-5120-01 18 480713 480713 G T COLEC12 Silent p.R18R 0.21 TCGA-B0-5120-01 19 17366335 17366335 G A USHBP1 Silent p.L517L 0.27 TCGA-B0-5120-01 19 21492050 21492050 G A ZNF708 Missense_Mutation p.P75L 0.16 tolerated(0.06) benign(0.062) TCGA-B0-5120-01 19 35831892 35831892 G C CD22 Missense_Mutation p.R453P 0.18 deleterious(0.02) possibly_damaging(0.841) TCGA-B0-5120-01 19 46191644 46191644 C - SNRPD2 Splice_Site p.X61_splice 0.31 TCGA-B0-5120-01 19 54618679 54618679 A T TFPT 5'UTR 0.35 TCGA-B0-5120-01 1 151611585 151611585 A G SNX27 Missense_Mutation p.E178G 0.27 deleterious(0) probably_damaging(0.998) TCGA-B0-5120-01 1 16803474 16803474 C T CROCCP3 RNA 0.11 TCGA-B0-5120-01 1 183086460 183086460 G T LAMC1 Missense_Mutation p.D524Y 0.27 deleterious(0) possibly_damaging(0.526) TCGA-B0-5120-01 1 201047117 201047117 C A CACNA1S Silent p.V503V 0.32 TCGA-B0-5120-01 1 222826645 222826645 A T MIA3 Missense_Mutation p.N1429Y 0.12 deleterious(0) benign(0.073) TCGA-B0-5120-01 1 223178702 223178702 T C DISP1 Silent p.A1321A 0.29 TCGA-B0-5120-01 1 229602504 229602504 C A NUP133 Splice_Site p.X693_splice 0.14 TCGA-B0-5120-01 1 31782970 31782970 A G ZCCHC17 Missense_Mutation p.M9V 0.26 tolerated_low_confidence(0.21) benign(0.007) TCGA-B0-5120-01 1 55534571 55534571 C G USP24 3'UTR 0.30 TCGA-B0-5120-01 21 38444809 38444809 C A PIGP Nonsense_Mutation p.E27* 0.20 TCGA-B0-5120-01 22 30766353 30766353 C A CCDC157 Silent p.P153P 0.24 TCGA-B0-5120-01 22 39908345 39908345 G A MIEF1 Missense_Mutation p.R144Q 0.24 tolerated(0.32) benign(0.005) TCGA-B0-5120-01 22 50303615 50303615 C T ALG12 Silent p.L197L 0.26 TCGA-B0-5120-01 2 160813103 160813103 A G PLA2R1 Silent p.S980S 0.28 TCGA-B0-5120-01 2 179476401 179476401 G A TTN Missense_Mutation p.P16852L 0.26 TCGA-B0-5120-01 2 20138069 20138069 C T WDR35 Missense_Mutation p.D685N 0.21 deleterious(0.05) benign(0.195) TCGA-B0-5120-01 2 24236227 24236227 G - MFSD2B Frame_Shift_Del p.A57Pfs*16 0.21 TCGA-B0-5120-01 2 25467122 25467122 T G DNMT3A Missense_Mutation p.M585L 0.28 tolerated(0.2) probably_damaging(0.95) TCGA-B0-5120-01 2 27305157 27305157 A T EMILIN1 Missense_Mutation p.I240F 0.20 probably_damaging(0.94) TCGA-B0-5120-01 2 71163082 71163082 T G ATP6V1B1 5'UTR 0.27 TCGA-B0-5120-01 2 73651718 73651718 C A ALMS1 Missense_Mutation p.Q309K 0.20 possibly_damaging(0.641) TCGA-B0-5120-01 2 96962717 96962717 C T SNRNP200 Missense_Mutation p.R490H 0.30 deleterious(0.03) benign(0.005) TCGA-B0-5120-01 3 178952088 178952088 A G PIK3CA Missense_Mutation p.H1048R 0.06 tolerated(0.33) benign(0.013) TCGA-B0-5120-01 3 52696277 52696278 - T PBRM1 Frame_Shift_Ins p.Y134Ifs*2 0.31 TCGA-B0-5120-01 4 174223301 174223301 G C GALNT7 Missense_Mutation p.E418Q 0.06 deleterious(0) probably_damaging(0.997) TCGA-B0-5120-01 5 180047687 180047687 G A FLT4 Silent p.I776I 0.09 TCGA-B0-5120-01 6 125233608 125233608 T C RP11-510H23.1 RNA 0.27 TCGA-B0-5120-01 6 147685200 147685200 C T STXBP5 Silent p.A993A 0.21 TCGA-B0-5120-01 6 30866812 30866812 C T DDR1 Nonsense_Mutation p.Q873* 0.10 TCGA-B0-5120-01 6 96997453 96997453 A G UFL1 Silent p.A562A 0.27 TCGA-B0-5120-01 7 107763582 107763582 G A LAMB4 Missense_Mutation p.H10Y 0.27 tolerated(0.32) benign(0.002) TCGA-B0-5120-01 7 135661852 135661852 T C MTPN 5'UTR 0.06 TCGA-B0-5120-01 7 37949276 37949276 C A SFRP4 Missense_Mutation p.M266I 0.24 deleterious(0.02) probably_damaging(0.977) TCGA-B0-5120-01 7 63981785 63981785 A G ZNF680 Silent p.L449L 0.30 TCGA-B0-5120-01 8 104444966 104444966 A T DCAF13 Missense_Mutation p.Y413F 0.28 tolerated(0.09) benign(0.043) TCGA-B0-5120-01 8 120886012 120886012 T C DEPTOR 5'UTR 0.27 TCGA-B0-5120-01 8 20038369 20038369 A T SLC18A1 Missense_Mutation p.M36K 0.31 deleterious(0) benign(0.342) TCGA-B0-5120-01 8 55539331 55539331 A T RP1 Missense_Mutation p.K963N 0.29 deleterious(0.04) benign(0.256) TCGA-B0-5120-01 9 113018711 113018711 A T TXN Missense_Mutation p.V2E 0.33 deleterious(0) probably_damaging(0.963) TCGA-B0-5120-01 9 214612 214612 C A C9orf66 Missense_Mutation p.R262L 0.41 deleterious_low_confidence(0) benign(0.433) TCGA-B0-5120-01 9 99580322 99580322 G A ZNF782 Silent p.L661L 0.27 TCGA-B0-5120-01 X 107224253 107224254 - T TEX13B 3'UTR 0.17 TCGA-B0-5120-01 X 114400841 114400841 C A LRCH2 Nonsense_Mutation p.E355* 0.09 TCGA-B0-5120-01 X 129063453 129063453 A C UTP14A Missense_Mutation p.I729L 0.07 deleterious(0) probably_damaging(0.945) TCGA-B0-5120-01 X 15706858 15706858 G T CA5BP1 RNA 0.16 TCGA-B0-5120-01 X 19410163 19410163 C T MAP3K15 Silent p.S796S 0.37 TCGA-B0-5120-01 X 48557408 48557408 C A SUV39H1 Silent p.V45V 0.29 TCGA-B0-5120-01 X 54982603 54982603 C T PFKFB1 Silent p.L207L 0.36 TCGA-B0-5120-01 X 69942475 69942475 G A TEX11 Missense_Mutation p.H348Y 0.10 tolerated(0.16) probably_damaging(0.963) TCGA-B0-5120-01 X 73068428 73068428 G C XIST RNA 0.17 TCGA-B0-5121-01 11 118498567 118498567 C G PHLDB1 Missense_Mutation p.A343G 0.35 tolerated(0.29) benign(0.248) TCGA-B0-5121-01 11 56510375 56510375 A G OR9G4 Missense_Mutation p.Y305H 0.38 deleterious(0) probably_damaging(0.921) TCGA-B0-5121-01 11 59282457 59282457 C T OR4D9 Silent p.S24S 0.27 TCGA-B0-5121-01 11 62297275 62297275 G A AHNAK Silent p.D1538D 0.32 TCGA-B0-5121-01 11 62652670 62652670 C T SLC3A2 Silent p.N382N 0.26 TCGA-B0-5121-01 12 6690533 6690533 T G CHD4 Missense_Mutation p.E1568A 0.27 tolerated(0.27) benign(0.005) TCGA-B0-5121-01 12 70087467 70087467 G A BEST3 Silent p.H156H 0.19 TCGA-B0-5121-01 12 83526102 83526102 A G TMTC2 Silent p.T815T 0.33 TCGA-B0-5121-01 13 20025322 20025322 C A TPTE2 Missense_Mutation p.R262L 0.21 deleterious(0.04) benign(0.068) TCGA-B0-5121-01 13 25670664 25670664 A C PABPC3 Missense_Mutation p.I110L 0.29 deleterious(0) possibly_damaging(0.786) TCGA-B0-5121-01 13 33261392 33261392 A C PDS5B Missense_Mutation p.H442P 0.27 deleterious(0) probably_damaging(0.946) TCGA-B0-5121-01 13 95830003 95830003 A C ABCC4 Missense_Mutation p.L562R 0.37 deleterious(0.03) probably_damaging(0.94) TCGA-B0-5121-01 14 59942835 59942835 T G L3HYPDH Missense_Mutation p.N259T 0.18 deleterious(0.05) possibly_damaging(0.6) TCGA-B0-5121-01 15 41828358 41828358 G - RPAP1 Frame_Shift_Del p.P130Lfs*32 0.21 TCGA-B0-5121-01 15 54025233 54025233 C T WDR72 Silent p.E38E 0.28 TCGA-B0-5121-01 15 60797816 60797816 T C RORA Missense_Mutation p.Q311R 0.03 deleterious(0.01) benign(0.065) TCGA-B0-5121-01 16 1389514 1389514 G A BAIAP3 Silent p.E141E 0.24 TCGA-B0-5121-01 16 27732992 27732992 T C KIAA0556 Silent p.V573V 0.23 TCGA-B0-5121-01 16 77327151 77327151 G A ADAMTS18 Missense_Mutation p.S1004F 0.13 deleterious(0) probably_damaging(1) TCGA-B0-5121-01 17 3370723 3370723 T C SPATA22 Missense_Mutation p.T57A 0.34 tolerated(0.18) benign(0.01) TCGA-B0-5121-01 17 34234256 34234256 G A AC015849.16 RNA 0.24 TCGA-B0-5121-01 17 4017674 4017674 G A ZZEF1 Missense_Mutation p.S262L 0.19 tolerated(0.06) benign(0.15) TCGA-B0-5121-01 17 67023488 67023488 T C ABCA9 Missense_Mutation p.I632V 0.27 tolerated(0.07) benign(0.192) TCGA-B0-5121-01 17 74719948 74719948 A T JMJD6 Missense_Mutation p.N237K 0.31 tolerated(0.39) benign(0.002) TCGA-B0-5121-01 18 21119752 21119752 G A NPC1 Intron 0.43 TCGA-B0-5121-01 18 28720256 28720256 G A DSC1 Silent p.N423N 0.08 TCGA-B0-5121-01 19 21216891 21216891 G A ZNF430 Splice_Site p.X75_splice 0.30 TCGA-B0-5121-01 1 147415632 147415632 A - GPR89B Frame_Shift_Del p.Y96Ffs*4 0.26 TCGA-B0-5121-01 1 185109279 185109279 G C TRMT1L Missense_Mutation p.S312C 0.17 tolerated(0.3) benign(0.12) TCGA-B0-5121-01 1 186320603 186320603 C G TPR Splice_Site p.X824_splice 0.04 TCGA-B0-5121-01 1 205767800 205767800 G T SLC41A1 Missense_Mutation p.L281M 0.26 tolerated(0.22) benign(0.284) TCGA-B0-5121-01 1 249150756 249150764 CCAAATCTG - ZNF692 Splice_Site p.X164_splice 0.25 TCGA-B0-5121-01 1 43914130 43914130 C A SZT2 Missense_Mutation p.S3258Y 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-B0-5121-01 1 62550236 62550236 C T INADL Silent p.V1431V 0.26 TCGA-B0-5121-01 22 19076918 19076918 C A DGCR2 Silent p.A55A 0.34 TCGA-B0-5121-01 2 1983506 1983506 T C MYT1L Missense_Mutation p.K15R 0.27 deleterious(0) unknown(0) TCGA-B0-5121-01 2 44040251 44040251 T C ABCG5 3'UTR 0.31 TCGA-B0-5121-01 2 54482422 54482422 C A TSPYL6 Missense_Mutation p.R289S 0.29 deleterious(0) possibly_damaging(0.842) TCGA-B0-5121-01 2 74732306 74732306 C T PCGF1 Silent p.L248L 0.43 TCGA-B0-5121-01 3 150917098 150917098 G A GPR171 Missense_Mutation p.L26F 0.28 deleterious(0.01) possibly_damaging(0.866) TCGA-B0-5121-01 3 196771400 196771400 G A DLG1 3'UTR 0.29 TCGA-B0-5121-01 3 47162787 47162787 A C SETD2 Nonsense_Mutation p.Y1113* 0.35 TCGA-B0-5121-01 3 49760159 49760159 T C GMPPB Missense_Mutation p.Y144C 0.50 deleterious(0) probably_damaging(1) TCGA-B0-5121-01 3 52668670 52668671 - T PBRM1 Frame_Shift_Ins p.Y417Ifs*3 0.33 TCGA-B0-5121-01 3 55504067 55504067 T A WNT5A 3'UTR 0.31 TCGA-B0-5121-01 4 52861345 52861345 C A LRRC66 Missense_Mutation p.D615Y 0.26 deleterious(0.04) possibly_damaging(0.453) TCGA-B0-5121-01 4 55156689 55156689 G T PDGFRA Missense_Mutation p.E1030D 0.26 tolerated(0.29) benign(0.005) TCGA-B0-5121-01 4 55156690 55156690 G T PDGFRA Nonsense_Mutation p.E1031* 0.26 TCGA-B0-5121-01 5 131289980 131289980 G T ACSL6 Missense_Mutation p.L706M 0.19 deleterious(0.03) probably_damaging(1) TCGA-B0-5121-01 6 132892288 132892288 T A TAAR6 Silent p.I276I 0.30 TCGA-B0-5121-01 6 27420988 27420988 G A ZNF184 Missense_Mutation p.S117F 0.28 tolerated(0.71) benign(0.172) TCGA-B0-5121-01 6 43230690 43230690 G T TTBK1 Missense_Mutation p.V530L 0.16 probably_damaging(0.992) TCGA-B0-5121-01 7 135277919 135277919 C A NUP205 Silent p.L603L 0.28 TCGA-B0-5121-01 7 23508130 23508130 T A IGF2BP3 Missense_Mutation p.E69D 0.26 deleterious(0.03) benign(0.062) TCGA-B0-5121-01 7 7398296 7398296 T G COL28A1 Missense_Mutation p.K1116Q 0.31 tolerated(0.22) benign(0.015) TCGA-B0-5121-01 9 111640376 111640376 C T IKBKAP Missense_Mutation p.G1252R 0.28 deleterious(0) benign(0.421) TCGA-B0-5121-01 9 123917154 123917154 C A CNTRL Missense_Mutation p.A1443E 0.22 possibly_damaging(0.694) TCGA-B0-5121-01 9 136521598 136521598 G A DBH Intron 0.26 TCGA-B0-5121-01 9 139262211 139262211 T G CARD9 Missense_Mutation p.K383Q 0.10 deleterious(0) probably_damaging(0.957) TCGA-B0-5399-01 10 105139365 105139365 G C TAF5 Missense_Mutation p.V372L 0.31 deleterious(0.02) benign(0.14) TCGA-B0-5399-01 10 375379 375379 G T DIP2C Silent p.S1249S 0.19 TCGA-B0-5399-01 11 18738394 18738394 G T IGSF22 Missense_Mutation p.T376K 0.25 tolerated(0.05) benign(0.063) TCGA-B0-5399-01 11 5068523 5068523 A T OR52J3 Silent p.S256S 0.24 TCGA-B0-5399-01 11 86663464 86663464 T C FZD4 Missense_Mutation p.I112V 0.32 tolerated(0.29) benign(0.065) TCGA-B0-5399-01 12 112221085 112221085 G A RP11-162P23.2 Missense_Mutation p.D112N 0.44 tolerated(0.15) possibly_damaging(0.9) TCGA-B0-5399-01 12 120574466 120574466 G A GCN1L1 Missense_Mutation p.A2283V 0.19 probably_damaging(0.998) TCGA-B0-5399-01 12 22068794 22068794 G T ABCC9 Silent p.L208L 0.29 TCGA-B0-5399-01 12 657232 657232 G A B4GALNT3 Silent p.K250K 0.27 TCGA-B0-5399-01 12 7890118 7890118 A T CLEC4C Missense_Mutation p.F96L 0.24 tolerated(0.43) benign(0.226) TCGA-B0-5399-01 13 33275559 33275559 G A PDS5B Missense_Mutation p.D614N 0.13 deleterious(0) benign(0.303) TCGA-B0-5399-01 14 94594972 94594972 C A IFI27L2 Missense_Mutation p.M26I 0.35 tolerated(0.23) benign(0.072) TCGA-B0-5399-01 15 62978977 62978977 A G TLN2 Silent p.S365S 0.22 TCGA-B0-5399-01 16 58550759 58550759 C G SETD6 Missense_Mutation p.S240C 0.25 deleterious(0.01) possibly_damaging(0.781) TCGA-B0-5399-01 17 27581416 27581416 T C CRYBA1 3'UTR 0.07 TCGA-B0-5399-01 19 1370836 1370836 C A MUM1 Missense_Mutation p.A583D 0.17 deleterious(0.01) probably_damaging(0.958) TCGA-B0-5399-01 19 45324077 45324077 G A BCAM Missense_Mutation p.E627K 0.44 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-B0-5399-01 19 8148162 8148162 G A FBN3 Silent p.Y2394Y 0.18 TCGA-B0-5399-01 1 103404625 103404625 C T COL11A1 Missense_Mutation p.G1135E 0.28 unknown(0) TCGA-B0-5399-01 1 12939851 12939851 G A PRAMEF4 Silent p.S317S 0.46 TCGA-B0-5399-01 1 168550370 168550370 G A XCL1 Missense_Mutation p.R86K 0.26 tolerated(1) benign(0.002) TCGA-B0-5399-01 1 168550371 168550371 G C XCL1 Missense_Mutation p.R86S 0.26 tolerated(0.53) benign(0.003) TCGA-B0-5399-01 1 18149661 18149661 T C ACTL8 Missense_Mutation p.L53P 0.34 deleterious(0) probably_damaging(0.98) TCGA-B0-5399-01 1 190067353 190067353 G T BRINP3 Missense_Mutation p.A699E 0.23 deleterious(0) probably_damaging(0.996) TCGA-B0-5399-01 1 214549669 214549669 C T PTPN14 Missense_Mutation p.A934T 0.29 tolerated(0.17) benign(0.016) TCGA-B0-5399-01 1 22928117 22928117 C G EPHA8 Intron 0.29 TCGA-B0-5399-01 1 236925966 236925966 G A ACTN2 3'UTR 0.14 TCGA-B0-5399-01 1 70697752 70697752 A G SRSF11 Intron 0.11 TCGA-B0-5399-01 20 3655259 3655259 G A ADAM33 Silent p.H164H 0.33 TCGA-B0-5399-01 22 24563174 24563174 C A CABIN1 Missense_Mutation p.L1859I 0.30 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-B0-5399-01 2 187698688 187698688 C T ZSWIM2 Silent p.T271T 0.04 TCGA-B0-5399-01 2 190532647 190532647 T A ASNSD1 Missense_Mutation p.I541N 0.29 deleterious(0) probably_damaging(0.999) TCGA-B0-5399-01 2 191864399 191864399 T G STAT1 Missense_Mutation p.D165A 0.23 deleterious(0) benign(0.291) TCGA-B0-5399-01 2 197001229 197001229 A T STK17B 3'UTR 0.41 TCGA-B0-5399-01 2 71060814 71060814 G C CD207 Silent p.G176G 0.29 TCGA-B0-5399-01 2 97833492 97833492 C A ANKRD36 Missense_Mutation p.P541T 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.731) TCGA-B0-5399-01 3 193052840 193052840 G C ATP13A5 Missense_Mutation p.T331S 0.25 tolerated(0.97) possibly_damaging(0.542) TCGA-B0-5399-01 3 47059147 47059151 AAGTC - SETD2 Frame_Shift_Del p.D2504* 0.26 TCGA-B0-5399-01 3 47127737 47127737 C T SETD2 Nonsense_Mutation p.W1782* 0.08 TCGA-B0-5399-01 3 47164613 47164613 C A SETD2 Nonsense_Mutation p.E505* 0.17 TCGA-B0-5399-01 3 52668817 52668817 C A PBRM1 Nonsense_Mutation p.E368* 0.32 TCGA-B0-5399-01 3 52742056 52742056 A T SPCS1 3'UTR 0.40 TCGA-B0-5399-01 5 148742273 148742273 G C PCYOX1L Missense_Mutation p.Q54H 0.29 tolerated(0.12) probably_damaging(0.914) TCGA-B0-5399-01 5 149677720 149677720 C - ARSI Frame_Shift_Del p.G256Afs*12 0.31 TCGA-B0-5399-01 5 176520705 176520705 G T FGFR4 Missense_Mutation p.R483L 0.25 tolerated(0.32) possibly_damaging(0.599) TCGA-B0-5399-01 5 64960063 64960063 G A TRAPPC13 Missense_Mutation p.S334N 0.20 tolerated(0.06) probably_damaging(0.962) TCGA-B0-5399-01 5 64960070 64960070 G T TRAPPC13 Missense_Mutation p.R336S 0.19 deleterious(0) probably_damaging(0.977) TCGA-B0-5399-01 6 117647553 117647553 C T ROS1 Silent p.Q1797Q 0.31 TCGA-B0-5399-01 6 12164190 12164190 G A HIVEP1 Silent p.L2551L 0.06 TCGA-B0-5399-01 6 150267506 150267506 A G ULBP2 Splice_Site p.X117_splice 0.28 TCGA-B0-5399-01 6 163985877 163985877 T A QKI Intron 0.32 TCGA-B0-5399-01 6 163985878 163985878 T A QKI Intron 0.32 TCGA-B0-5399-01 8 145649507 145649507 G A VPS28 Silent p.P155P 0.19 TCGA-B0-5399-01 9 95165751 95165751 A G OGN 5'UTR 0.22 TCGA-B0-5399-01 X 24537120 24537120 A C PDK3 Missense_Mutation p.E222D 0.52 deleterious(0.03) benign(0.013) TCGA-B0-5399-01 X 77373615 77373615 T A PGK1 Missense_Mutation p.F197I 0.57 deleterious(0.02) probably_damaging(0.986) TCGA-B0-5400-01 10 120921912 120921912 G C SFXN4 Missense_Mutation p.N64K 0.13 tolerated(1) benign(0.002) TCGA-B0-5400-01 10 35299283 35299283 C T CUL2 Missense_Mutation p.E751K 0.12 deleterious(0) probably_damaging(0.991) TCGA-B0-5400-01 10 50121787 50121787 G A LRRC18 Silent p.T138T 0.13 TCGA-B0-5400-01 10 68688186 68688186 C A LRRTM3 Missense_Mutation p.N504K 0.14 tolerated(0.06) benign(0.109) TCGA-B0-5400-01 10 90966990 90966990 C T CH25H Silent p.L20L 0.21 TCGA-B0-5400-01 11 43469635 43469635 G A TTC17 Missense_Mutation p.V917M 0.12 tolerated(0.08) benign(0.439) TCGA-B0-5400-01 12 11214646 11214646 G T TAS2R46 Missense_Mutation p.T83N 0.17 deleterious(0.03) benign(0.436) TCGA-B0-5400-01 12 18649023 18649023 T C PIK3C2G Silent p.L900L 0.10 TCGA-B0-5400-01 12 25380282 25380282 G C KRAS Missense_Mutation p.A59G 0.10 deleterious(0.01) benign(0.353) TCGA-B0-5400-01 12 50616129 50616129 T A LIMA1 Missense_Mutation p.D102V 0.12 tolerated(0.28) benign(0.006) TCGA-B0-5400-01 13 26148985 26148985 G T ATP8A2 Nonsense_Mutation p.E568* 0.11 TCGA-B0-5400-01 15 85230906 85230906 T C SEC11A Missense_Mutation p.I87M 0.13 deleterious(0) possibly_damaging(0.766) TCGA-B0-5400-01 16 58743325 58743325 T C GOT2 Missense_Mutation p.E389G 0.20 deleterious(0.01) possibly_damaging(0.615) TCGA-B0-5400-01 17 39619147 39619147 G A KRT32 Silent p.D384D 0.13 TCGA-B0-5400-01 17 40148366 40148366 A G DNAJC7 Missense_Mutation p.L123P 0.13 tolerated(0.27) possibly_damaging(0.707) TCGA-B0-5400-01 17 64881351 64881351 C T CACNG5 Silent p.P274P 0.24 TCGA-B0-5400-01 17 7801818 7801818 C A CHD3 Missense_Mutation p.L745I 0.07 benign(0.364) TCGA-B0-5400-01 18 59815498 59815498 A G PIGN Missense_Mutation p.L208S 0.13 deleterious(0) probably_damaging(0.998) TCGA-B0-5400-01 19 39591391 39591391 T G PAPL Silent p.G235G 0.10 TCGA-B0-5400-01 19 54760570 54760570 G A LILRB5 Missense_Mutation p.T46I 0.20 deleterious(0.04) probably_damaging(0.973) TCGA-B0-5400-01 19 56243438 56243438 G A NLRP9 Missense_Mutation p.H587Y 0.16 tolerated(0.21) benign(0.045) TCGA-B0-5400-01 1 154941261 154941261 T G SHC1 Missense_Mutation p.T206P 0.10 tolerated(0.14) benign(0.283) TCGA-B0-5400-01 1 16560173 16560173 C T RSG1 Missense_Mutation p.G67S 0.15 deleterious(0) probably_damaging(1) TCGA-B0-5400-01 1 20233088 20233088 A G OTUD3 Silent p.A333A 0.11 TCGA-B0-5400-01 1 205350814 205350814 G T LEMD1 Missense_Mutation p.T173N 0.15 deleterious(0) benign(0.403) TCGA-B0-5400-01 1 234599596 234599596 T C TARBP1 Silent p.P462P 0.09 TCGA-B0-5400-01 1 93307322 93307322 G C RPL5 Splice_Site p.X265_splice 0.10 TCGA-B0-5400-01 21 36081084 36081084 C T CLIC6 Missense_Mutation p.T566M 0.15 deleterious(0) probably_damaging(0.972) TCGA-B0-5400-01 2 113943717 113943717 A - PSD4 Frame_Shift_Del p.K506Rfs*13 0.24 TCGA-B0-5400-01 2 128263302 128263302 G T IWS1 Silent p.G59G 0.13 TCGA-B0-5400-01 2 191334581 191334581 G T MFSD6 Nonsense_Mutation p.G544* 0.11 TCGA-B0-5400-01 3 179481850 179481850 T G USP13 Missense_Mutation p.V718G 0.10 tolerated(0.4) benign(0.001) TCGA-B0-5400-01 3 27442256 27442256 G A SLC4A7 Missense_Mutation p.S800F 0.14 deleterious(0) possibly_damaging(0.633) TCGA-B0-5400-01 3 52246387 52246387 G A ALAS1 Silent p.R571R 0.11 TCGA-B0-5400-01 4 153244135 153244135 C G FBXW7 Silent p.R674R 0.11 TCGA-B0-5400-01 4 186283245 186283245 T C SNX25 Missense_Mutation p.L776P 0.09 deleterious(0) probably_damaging(0.999) TCGA-B0-5400-01 5 137802563 137802563 C T EGR1 Missense_Mutation p.A142V 0.09 deleterious(0.02) possibly_damaging(0.787) TCGA-B0-5400-01 6 26452602 26452602 A G BTN3A3 Missense_Mutation p.N573S 0.08 tolerated_low_confidence(0.3) possibly_damaging(0.739) TCGA-B0-5400-01 7 107820706 107820706 G A NRCAM Missense_Mutation p.P938S 0.24 deleterious(0.01) probably_damaging(1) TCGA-B0-5400-01 7 120595899 120595899 T A ING3 Intron 0.18 TCGA-B0-5400-01 7 151854870 151854870 G - KMT2C Intron 0.16 TCGA-B0-5400-01 7 82996992 82996992 G A SEMA3E Silent p.P746P 0.10 TCGA-B0-5400-01 8 121301974 121301974 G A COL14A1 Missense_Mutation p.R1402Q 0.04 deleterious(0.04) probably_damaging(0.986) TCGA-B0-5400-01 9 111976002 111976002 G T EPB41L4B Missense_Mutation p.P577H 0.11 deleterious(0.04) benign(0.213) TCGA-B0-5400-01 9 90252926 90252933 AATTTCTC - DAPK1 Frame_Shift_Del p.F119Tfs*4 0.08 TCGA-B0-5400-01 X 112058900 112058900 G T AMOT Missense_Mutation p.Q360K 0.08 unknown(0) TCGA-B0-5400-01 X 118604069 118604069 T C SLC25A5 Missense_Mutation p.I186T 0.08 tolerated(0.08) benign(0.06) TCGA-B0-5400-01 X 123630881 123630881 C G TENM1 Missense_Mutation p.S1227T 0.15 tolerated(0.3) benign(0.003) TCGA-B0-5400-01 X 12736620 12736620 C A FRMPD4 Silent p.G1225G 0.19 TCGA-B0-5400-01 X 54043171 54043171 T C PHF8 Splice_Site p.X188_splice 0.08 TCGA-B0-5402-01 11 117280564 117280564 G A CEP164 Missense_Mutation p.A1327T 0.13 tolerated(0.16) benign(0.242) TCGA-B0-5402-01 11 123909221 123909221 A T OR10G7 Missense_Mutation p.F163Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-B0-5402-01 11 128772493 128772493 G T C11orf45 Missense_Mutation p.P133T 0.23 tolerated_low_confidence(0.2) possibly_damaging(0.803) TCGA-B0-5402-01 11 56258051 56258051 A C OR5M8 Missense_Mutation p.S266A 0.35 deleterious(0.02) benign(0.215) TCGA-B0-5402-01 11 6261895 6261895 A G CNGA4 Missense_Mutation p.K291E 0.09 tolerated(0.52) benign(0.184) TCGA-B0-5402-01 11 86097128 86097128 G A CCDC81 Missense_Mutation p.V39M 0.34 deleterious(0) probably_damaging(0.997) TCGA-B0-5402-01 12 133359043 133359043 G A GOLGA3 Missense_Mutation p.R1102C 0.14 deleterious(0.05) benign(0.099) TCGA-B0-5402-01 12 20792854 20792854 T A PDE3A Nonsense_Mutation p.Y738* 0.30 TCGA-B0-5402-01 12 54970410 54970410 G A PDE1B Missense_Mutation p.V478M 0.34 deleterious(0.03) benign(0.015) TCGA-B0-5402-01 12 56816773 56816773 G C TIMELESS Missense_Mutation p.L766V 0.26 deleterious(0) probably_damaging(0.986) TCGA-B0-5402-01 12 6969582 6969582 G A USP5 Missense_Mutation p.G424D 0.21 deleterious(0.02) benign(0.118) TCGA-B0-5402-01 13 21205163 21205163 G T IFT88 Missense_Mutation p.E445D 0.12 tolerated(0.43) benign(0.004) TCGA-B0-5402-01 13 47303069 47303069 C T LRCH1 Missense_Mutation p.H653Y 0.35 deleterious(0) probably_damaging(0.966) TCGA-B0-5402-01 15 76016536 76016536 C A ODF3L1 5'UTR 0.21 TCGA-B0-5402-01 16 1997038 1997038 C A RPL3L Missense_Mutation p.K250N 0.26 deleterious(0) probably_damaging(0.991) TCGA-B0-5402-01 17 40001990 40001990 G T KLHL10 Missense_Mutation p.G433W 0.22 deleterious(0) probably_damaging(0.979) TCGA-B0-5402-01 17 74477604 74477604 C T RHBDF2 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-B0-5402-01 18 6859884 6859884 G T ARHGAP28 Missense_Mutation p.R79S 0.29 tolerated(0.64) benign(0.001) TCGA-B0-5402-01 19 36159306 36159306 C T UPK1A Intron 0.19 TCGA-B0-5402-01 19 51530749 51530749 C T KLK11 Missense_Mutation p.D9N 0.14 tolerated_low_confidence(0.23) benign(0.01) TCGA-B0-5402-01 19 51857732 51857732 G C ETFB Missense_Mutation p.P54R 0.29 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-B0-5402-01 19 55220542 55220542 A G AC098784.2 3'Flank 0.09 TCGA-B0-5402-01 19 7807865 7807865 T C CD209 3'UTR 0.12 TCGA-B0-5402-01 1 111490650 111490652 TCT - LRIF1 In_Frame_Del p.R747del 0.23 TCGA-B0-5402-01 1 116228061 116228061 G T VANGL1 Silent p.L409L 0.08 TCGA-B0-5402-01 1 186281887 186281887 C A TPR 3'UTR 0.16 TCGA-B0-5402-01 1 65330477 65330479 TTG - JAK1 In_Frame_Del p.N389del 0.35 TCGA-B0-5402-01 20 2398051 2398051 C T TGM6 Missense_Mutation p.P504S 0.31 tolerated(0.29) possibly_damaging(0.789) TCGA-B0-5402-01 20 35507457 35507457 T G TLDC2 Missense_Mutation p.F68C 0.23 deleterious(0) possibly_damaging(0.492) TCGA-B0-5402-01 21 44323941 44323941 A G NDUFV3 Silent p.R273R 0.39 TCGA-B0-5402-01 22 43821061 43821061 G C MPPED1 Missense_Mutation p.G24R 0.22 deleterious_low_confidence(0.01) benign(0.021) TCGA-B0-5402-01 2 102460601 102460601 G A MAP4K4 Missense_Mutation p.R354Q 0.33 deleterious_low_confidence(0) unknown(0) TCGA-B0-5402-01 2 120194742 120194742 T C TMEM37 Missense_Mutation p.V100A 0.16 deleterious(0.05) possibly_damaging(0.654) TCGA-B0-5402-01 2 135966529 135966529 C G ZRANB3 Missense_Mutation p.V839L 0.25 tolerated(0.06) possibly_damaging(0.801) TCGA-B0-5402-01 2 160636594 160636594 G T LY75-CD302 Missense_Mutation p.L1772M 0.05 tolerated(0.29) probably_damaging(0.997) TCGA-B0-5402-01 2 238277320 238277320 C T COL6A3 Missense_Mutation p.V1596M 0.26 probably_damaging(0.989) TCGA-B0-5402-01 3 10191572 10191572 G T VHL Nonsense_Mutation p.E189* 0.29 TCGA-B0-5402-01 3 150384662 150384662 C A FAM194A Missense_Mutation p.G547V 0.30 deleterious(0) probably_damaging(0.998) TCGA-B0-5402-01 3 158415529 158415529 C G RARRES1 Missense_Mutation p.E275Q 0.28 tolerated(0.08) benign(0.406) TCGA-B0-5402-01 3 47164342 47164343 GA - SETD2 Frame_Shift_Del p.S595Kfs*3 0.24 TCGA-B0-5402-01 3 49775709 49775709 G A IP6K1 Missense_Mutation p.R124W 0.15 deleterious(0.03) possibly_damaging(0.72) TCGA-B0-5402-01 3 87302584 87302584 G A CHMP2B Missense_Mutation p.G152D 0.44 tolerated(0.89) benign(0.001) TCGA-B0-5402-01 4 103988700 103988700 T C SLC9B2 Missense_Mutation p.D3G 0.30 deleterious_low_confidence(0.02) benign(0.126) TCGA-B0-5402-01 4 175896768 175896768 C T ADAM29 Missense_Mutation p.P31L 0.20 deleterious(0.03) possibly_damaging(0.848) TCGA-B0-5402-01 5 127664442 127664442 G A FBN2 Missense_Mutation p.R1473C 0.53 deleterious(0) probably_damaging(0.969) TCGA-B0-5402-01 5 140530050 140530050 G C PCDHB6 Missense_Mutation p.R71T 0.20 deleterious(0.05) benign(0.017) TCGA-B0-5402-01 5 146798117 146798117 C A DPYSL3 Missense_Mutation p.G183V 0.22 deleterious(0) probably_damaging(1) TCGA-B0-5402-01 5 149563122 149563122 C T CDX1 Missense_Mutation p.P226L 0.15 deleterious(0.01) benign(0.002) TCGA-B0-5402-01 5 173426710 173426710 T G C5orf47 Missense_Mutation p.V140G 0.20 deleterious(0) possibly_damaging(0.851) TCGA-B0-5402-01 5 32088407 32088407 C A PDZD2 Missense_Mutation p.P1618H 0.29 deleterious(0) possibly_damaging(0.907) TCGA-B0-5402-01 5 45262590 45262590 C T HCN1 Silent p.A702A 0.33 TCGA-B0-5402-01 5 7867988 7867988 C T FASTKD3 Missense_Mutation p.G70E 0.20 tolerated(0.21) benign(0.099) TCGA-B0-5402-01 6 43107148 43107148 G C PTK7 Missense_Mutation p.K509N 0.39 tolerated(0.11) benign(0.188) TCGA-B0-5402-01 7 149468119 149468119 C G ZNF467 Translation_Start_Site p.M1? 0.31 deleterious(0) benign(0.079) TCGA-B0-5402-01 7 151684265 151684265 A C GALNTL5 Missense_Mutation p.D186A 0.12 deleterious(0.02) probably_damaging(0.957) TCGA-B0-5402-01 7 24756899 24756899 A - DFNA5 Frame_Shift_Del p.L224Yfs*3 0.38 TCGA-B0-5402-01 7 89791288 89791288 G T STEAP1 Missense_Mutation p.V220L 0.14 tolerated(0.67) probably_damaging(0.997) TCGA-B0-5402-01 8 139845296 139845296 C T COL22A1 Silent p.V277V 0.29 TCGA-B0-5402-01 8 33354168 33354168 T C MAK16 Missense_Mutation p.I183T 0.30 tolerated(0.54) benign(0.216) TCGA-B0-5402-01 9 101818627 101818627 G T COL15A1 Missense_Mutation p.G1093V 0.29 deleterious(0) probably_damaging(0.998) TCGA-B0-5402-01 9 34648884 34648884 G T GALT Missense_Mutation p.E271D 0.25 tolerated(0.06) benign(0.346) TCGA-B0-5402-01 X 119500536 119500536 C T ATP1B4 Nonsense_Mutation p.Q74* 0.64 TCGA-B0-5690-01 10 120796677 120796677 G A EIF3A Silent p.D1291D 0.24 TCGA-B0-5690-01 10 13275578 13275578 C G UCMA Missense_Mutation p.R60S 0.15 deleterious(0) benign(0.281) TCGA-B0-5690-01 10 134161555 134161555 C T LRRC27 Silent p.D207D 0.13 TCGA-B0-5690-01 10 94372872 94372872 C T KIF11 Silent p.I258I 0.21 TCGA-B0-5690-01 10 95069798 95069798 G A MYOF Silent p.A2042A 0.06 TCGA-B0-5690-01 11 10625982 10625982 T C MRVI1 Silent p.K571K 0.26 TCGA-B0-5690-01 11 111636990 111636990 G T PPP2R1B Silent p.L32L 0.25 TCGA-B0-5690-01 11 18266907 18266907 C T SAA2 3'UTR 0.24 TCGA-B0-5690-01 12 117155590 117155590 G - C12orf49 3'UTR 0.11 TCGA-B0-5690-01 12 43770091 43770091 T A ADAMTS20 Missense_Mutation p.H1723L 0.03 deleterious(0.01) benign(0.055) TCGA-B0-5690-01 12 56667385 56667385 C T CS Missense_Mutation p.G406R 0.04 deleterious(0.01) probably_damaging(1) TCGA-B0-5690-01 12 57927747 57927747 G T DCTN2 Missense_Mutation p.Q225K 0.25 tolerated(0.14) benign(0.228) TCGA-B0-5690-01 12 58009037 58009037 G A ARHGEF25 Missense_Mutation p.M365I 0.15 deleterious(0.03) benign(0.291) TCGA-B0-5690-01 14 51239019 51239019 C T NIN Silent p.K327K 0.24 TCGA-B0-5690-01 14 53326282 53326282 T C FERMT2 Intron 0.21 TCGA-B0-5690-01 14 88951497 88951497 G T PTPN21 Missense_Mutation p.P334H 0.24 deleterious(0.03) benign(0.049) TCGA-B0-5690-01 15 90162999 90162999 C T TICRR Missense_Mutation p.A1027V 0.23 deleterious(0.03) benign(0.014) TCGA-B0-5690-01 16 50357571 50357571 T C BRD7 Missense_Mutation p.Y457C 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-B0-5690-01 17 18793149 18793149 G T PRPSAP2 Missense_Mutation p.R181S 0.25 tolerated(0.06) benign(0.04) TCGA-B0-5690-01 17 19215384 19215384 G A EPN2 Missense_Mutation p.G300D 0.18 deleterious(0.02) probably_damaging(0.98) TCGA-B0-5690-01 17 27042498 27042498 T G RAB34 Missense_Mutation p.D193A 0.18 deleterious(0.01) possibly_damaging(0.734) TCGA-B0-5690-01 17 3806924 3806924 G T P2RX1 Missense_Mutation p.P176T 0.23 deleterious(0) probably_damaging(0.999) TCGA-B0-5690-01 17 67145220 67145220 G T ABCA10 Missense_Mutation p.T1496N 0.18 tolerated(1) benign(0.004) TCGA-B0-5690-01 17 73230836 73230836 T C NUP85 Missense_Mutation p.W574R 0.19 deleterious(0) possibly_damaging(0.775) TCGA-B0-5690-01 18 18624095 18624095 C T ROCK1 Missense_Mutation p.A215T 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-B0-5690-01 19 18092749 18092749 G A KCNN1 Missense_Mutation p.V244M 0.19 deleterious(0) benign(0.206) TCGA-B0-5690-01 19 39908617 39908617 G A PLEKHG2 Missense_Mutation p.A319T 0.20 tolerated_low_confidence(0.7) benign(0.009) TCGA-B0-5690-01 19 41949104 41949104 T - C19orf69 Frame_Shift_Del p.G11Dfs*14 0.14 TCGA-B0-5690-01 19 4512360 4512360 C T PLIN4 Missense_Mutation p.G524R 0.20 deleterious(0.04) possibly_damaging(0.908) TCGA-B0-5690-01 19 55085911 55085911 C T LILRA2 Missense_Mutation p.R72W 0.18 tolerated(0.07) benign(0.001) TCGA-B0-5690-01 1 10342443 10342443 G C KIF1B Intron 0.24 TCGA-B0-5690-01 1 110924374 110924374 A G SLC16A4 Silent p.T88T 0.21 TCGA-B0-5690-01 1 161068444 161068444 T C KLHDC9 Missense_Mutation p.F40S 0.14 deleterious(0) possibly_damaging(0.807) TCGA-B0-5690-01 1 182849684 182849684 G T DHX9 Silent p.L855L 0.19 TCGA-B0-5690-01 1 186370351 186370351 C T OCLM 3'UTR 0.27 TCGA-B0-5690-01 1 203276444 203276444 A G BTG2 Missense_Mutation p.I119V 0.33 deleterious(0.04) possibly_damaging(0.901) TCGA-B0-5690-01 1 205810948 205810948 T C PM20D1 Silent p.A345A 0.21 TCGA-B0-5690-01 1 212548591 212548591 G C TMEM206 Missense_Mutation p.Q340E 0.23 tolerated(0.32) probably_damaging(0.99) TCGA-B0-5690-01 1 214813471 214813471 C T CENPF Missense_Mutation p.A597V 0.20 possibly_damaging(0.621) TCGA-B0-5690-01 1 245912784 245912784 A G SMYD3 3'Flank 0.23 TCGA-B0-5690-01 1 31902292 31902292 T C AC114494.1 Missense_Mutation p.N108S 0.20 benign(0) TCGA-B0-5690-01 20 39317202 39317202 G A MAFB Missense_Mutation p.P97S 0.14 tolerated(0.05) benign(0.378) TCGA-B0-5690-01 21 47975938 47975938 C T DIP2A Silent p.P1144P 0.04 TCGA-B0-5690-01 22 22842638 22842638 G T ZNF280B Silent p.I362I 0.04 TCGA-B0-5690-01 22 46615758 46615758 A T PPARA Silent p.A186A 0.28 TCGA-B0-5690-01 22 50928278 50928278 G A MIOX Missense_Mutation p.S284N 0.21 tolerated(0.4) benign(0.002) TCGA-B0-5690-01 2 136872690 136872690 T C CXCR4 Missense_Mutation p.I274V 0.25 tolerated(0.22) benign(0.051) TCGA-B0-5690-01 2 170048465 170048465 C A LRP2 Missense_Mutation p.W2970L 0.22 benign(0.247) TCGA-B0-5690-01 2 179614065 179614065 G - TTN Intron 0.16 TCGA-B0-5690-01 2 182783594 182783594 T G SSFA2 Missense_Mutation p.M993R 0.21 deleterious(0) possibly_damaging(0.802) TCGA-B0-5690-01 2 29449909 29449909 C T ALK Silent p.K982K 0.28 TCGA-B0-5690-01 2 86305367 86305367 C T POLR1A Missense_Mutation p.S376N 0.21 tolerated(0.2) benign(0.131) TCGA-B0-5690-01 2 89399375 89399375 A C IGKV1-16 Missense_Mutation p.C110G 0.19 deleterious(0) benign(0.246) TCGA-B0-5690-01 3 128696934 128696934 C T KIAA1257 Silent p.P254P 0.02 TCGA-B0-5690-01 3 185644407 185644407 C T TRA2B Missense_Mutation p.R51K 0.33 tolerated_low_confidence(0.25) unknown(0) TCGA-B0-5690-01 3 47061242 47061257 AACCTTACCTCTTTTC - SETD2 Splice_Site p.X2475_splice 0.13 TCGA-B0-5690-01 3 52584834 52584834 C A PBRM1 Splice_Site p.X1430_splice 0.27 TCGA-B0-5690-01 3 77599993 77599993 C A ROBO2 Missense_Mutation p.Q378K 0.26 tolerated(0.16) benign(0) TCGA-B0-5690-01 4 159140467 159140467 G A TMEM144 Missense_Mutation p.G113D 0.24 deleterious(0) probably_damaging(1) TCGA-B0-5690-01 4 56840914 56840914 C T CEP135 Nonsense_Mutation p.R418* 0.06 TCGA-B0-5690-01 4 85663073 85663073 C T WDFY3 Silent p.G2025G 0.22 TCGA-B0-5690-01 5 121358103 121358103 G A SRFBP1 Splice_Site p.X369_splice 0.26 TCGA-B0-5690-01 5 126746208 126746208 C G MEGF10 Missense_Mutation p.R349G 0.22 tolerated(0.11) benign(0.049) TCGA-B0-5690-01 5 13793789 13793789 T A DNAH5 Missense_Mutation p.N2687Y 0.05 possibly_damaging(0.904) TCGA-B0-5690-01 5 176562158 176562158 T C NSD1 Silent p.N18N 0.21 TCGA-B0-5690-01 6 151121859 151121859 G T PLEKHG1 Missense_Mutation p.V212L 0.06 deleterious(0.03) probably_damaging(0.956) TCGA-B0-5690-01 6 31974802 31974802 C G AL645922.1 Intron 0.24 TCGA-B0-5690-01 6 405128 405128 C A IRF4 Missense_Mutation p.H404N 0.12 deleterious(0.02) benign(0.02) TCGA-B0-5690-01 7 136699903 136699903 C G CHRM2 Missense_Mutation p.D97E 0.22 deleterious(0) probably_damaging(1) TCGA-B0-5690-01 7 44798879 44798879 G A ZMIZ2 Splice_Site p.X272_splice 0.17 TCGA-B0-5690-01 7 73654350 73654350 T C RFC2 Missense_Mutation p.N204S 0.25 tolerated(0.21) benign(0) TCGA-B0-5690-01 7 74538937 74538937 G T GTF2IRD2B Missense_Mutation p.G120V 0.26 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-B0-5690-01 8 144618600 144618600 C A ZC3H3 Missense_Mutation p.G463V 0.33 deleterious(0) benign(0.034) TCGA-B0-5690-01 8 21824460 21824460 T A XPO7 Missense_Mutation p.F37L 0.13 tolerated(0.96) benign(0.002) TCGA-B0-5690-01 9 134343040 134343040 G A PRRC2B Missense_Mutation p.S604N 0.27 tolerated(0.07) benign(0.008) TCGA-B0-5690-01 9 135863589 135863589 C T GFI1B Missense_Mutation p.P82S 0.26 tolerated(0.47) benign(0) TCGA-B0-5690-01 X 138679690 138679690 G A MCF2 Missense_Mutation p.L738F 0.03 deleterious(0) probably_damaging(1) TCGA-B0-5690-01 X 153176189 153176189 G T ARHGAP4 Missense_Mutation p.P634H 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-B0-5690-01 X 3028272 3028272 C T ARSF Missense_Mutation p.R457W 0.09 deleterious(0) probably_damaging(1) TCGA-B0-5690-01 X 72667208 72667208 C T CDX4 Missense_Mutation p.P40L 0.25 deleterious(0) possibly_damaging(0.602) TCGA-B0-5690-01 X 79279610 79279610 G T TBX22 Silent p.G135G 0.03 TCGA-B0-5691-01 10 28229610 28229610 G A ARMC4 Missense_Mutation p.T623M 0.12 deleterious(0.01) benign(0.017) TCGA-B0-5691-01 10 43698841 43698841 T C RASGEF1A Missense_Mutation p.S76G 0.19 deleterious(0.01) benign(0.026) TCGA-B0-5691-01 10 88422065 88422065 G A OPN4 Missense_Mutation p.R388Q 0.25 tolerated(0.92) benign(0.004) TCGA-B0-5691-01 11 123887117 123887117 C T OR10G4 Missense_Mutation p.T279M 0.08 deleterious(0) probably_damaging(0.939) TCGA-B0-5691-01 11 9459375 9459375 G A IPO7 Missense_Mutation p.M781I 0.17 deleterious(0.05) benign(0.188) TCGA-B0-5691-01 12 11461568 11461568 G T PRB4 Missense_Mutation p.P117T 0.24 tolerated_low_confidence(0.2) unknown(0) TCGA-B0-5691-01 12 27081163 27081163 T C ASUN Missense_Mutation p.N187D 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-B0-5691-01 12 32134198 32134198 A C KIAA1551 Missense_Mutation p.Q103H 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-B0-5691-01 12 86230146 86230146 G C RASSF9 5'UTR 0.21 TCGA-B0-5691-01 12 9008181 9008181 G A A2ML1 Silent p.T947T 0.18 TCGA-B0-5691-01 13 111340142 111340142 G T CARS2 Missense_Mutation p.T166N 0.33 deleterious(0) probably_damaging(0.997) TCGA-B0-5691-01 13 76381790 76381791 - T LMO7 Frame_Shift_Ins p.L225Ffs*4 0.15 TCGA-B0-5691-01 14 24845299 24845299 T G NFATC4 Missense_Mutation p.F746C 0.28 deleterious(0) probably_damaging(0.973) TCGA-B0-5691-01 15 28000341 28000341 A G OCA2 3'UTR 0.24 TCGA-B0-5691-01 15 60740179 60740179 T A NARG2 Missense_Mutation p.K762I 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-B0-5691-01 16 31724708 31724708 C T ZNF720 5'UTR 0.19 TCGA-B0-5691-01 16 55519518 55519518 G A MMP2 Missense_Mutation p.V221I 0.24 tolerated(0.13) benign(0.048) TCGA-B0-5691-01 16 67709639 67709639 T C GFOD2 Missense_Mutation p.R193G 0.12 deleterious(0) possibly_damaging(0.493) TCGA-B0-5691-01 17 38793756 38793758 CCT - SMARCE1 In_Frame_Del p.R75del 0.22 TCGA-B0-5691-01 17 40004451 40004451 A C KLHL10 Silent p.P573P 0.18 TCGA-B0-5691-01 17 8052099 8052099 C A PER1 Missense_Mutation p.G304V 0.16 deleterious(0) benign(0.283) TCGA-B0-5691-01 18 21353525 21353526 CA GAT LAMA3 Frame_Shift_Ins p.P416Rfs*6 0.17 TCGA-B0-5691-01 19 18497194 18497194 C A GDF15 Silent p.T65T 0.32 TCGA-B0-5691-01 19 3179916 3179916 T C S1PR4 Missense_Mutation p.S376P 0.18 tolerated(0.09) benign(0.002) TCGA-B0-5691-01 19 48634399 48634399 C A LIG1 Missense_Mutation p.K585N 0.17 tolerated(0.3) benign(0.049) TCGA-B0-5691-01 19 50017370 50017370 T A FCGRT Missense_Mutation p.F102Y 0.15 tolerated(0.07) benign(0.345) TCGA-B0-5691-01 19 55351066 55351066 C T KIR2DS4 Missense_Mutation p.T185M 0.25 tolerated_low_confidence(0.32) possibly_damaging(0.647) TCGA-B0-5691-01 19 58597544 58597544 G T ZSCAN18 Missense_Mutation p.P335T 0.24 deleterious(0.01) benign(0.13) TCGA-B0-5691-01 1 11177077 11177077 A C MTOR Missense_Mutation p.L2334V 0.12 deleterious(0) probably_damaging(0.992) TCGA-B0-5691-01 1 145509177 145509177 G T RBM8A Missense_Mutation p.R164I 0.13 deleterious(0.03) unknown(0) TCGA-B0-5691-01 1 149859184 149859185 - CA HIST2H2AB Frame_Shift_Ins p.N95* 0.20 TCGA-B0-5691-01 1 157497598 157497598 G A FCRL5 Missense_Mutation p.P590L 0.18 tolerated(0.5) benign(0.001) TCGA-B0-5691-01 1 235295228 235295228 T G RBM34 Missense_Mutation p.K365Q 0.22 deleterious(0.01) possibly_damaging(0.54) TCGA-B0-5691-01 1 61743222 61743222 C T NFIA Missense_Mutation p.P242L 0.15 tolerated(0.33) benign(0.149) TCGA-B0-5691-01 1 67358977 67358977 T G WDR78 Missense_Mutation p.E155D 0.25 tolerated(1) benign(0.004) TCGA-B0-5691-01 20 10393381 10393381 A G MKKS Missense_Mutation p.V261A 0.08 tolerated(0.65) benign(0.014) TCGA-B0-5691-01 20 21321460 21321460 A T XRN2 Silent p.A460A 0.25 TCGA-B0-5691-01 20 39832047 39832047 C A ZHX3 Nonsense_Mutation p.E504* 0.18 TCGA-B0-5691-01 20 60511821 60511821 C T CDH4 Silent p.P857P 0.20 TCGA-B0-5691-01 2 11348011 11348011 T A ROCK2 Missense_Mutation p.E797V 0.18 deleterious(0) probably_damaging(0.944) TCGA-B0-5691-01 2 11348012 11348012 C T ROCK2 Missense_Mutation p.E797K 0.18 deleterious(0) possibly_damaging(0.83) TCGA-B0-5691-01 2 33534615 33534615 C G LTBP1 Missense_Mutation p.T1199R 0.23 tolerated(0.47) benign(0.005) TCGA-B0-5691-01 2 84912547 84912547 T C DNAH6 Silent p.I2338I 0.17 TCGA-B0-5691-01 3 10191499 10191499 G - VHL Frame_Shift_Del p.V165Lfs*5 0.31 TCGA-B0-5691-01 3 112969550 112969550 G T BOC Silent p.L82L 0.23 TCGA-B0-5691-01 3 133302937 133302937 T C CDV3 Missense_Mutation p.S137P 0.19 deleterious(0.03) probably_damaging(0.979) TCGA-B0-5691-01 4 146824194 146824194 T C ZNF827 Missense_Mutation p.S73G 0.13 tolerated(0.22) probably_damaging(0.984) TCGA-B0-5691-01 5 138209538 138209538 A C LRRTM2 Missense_Mutation p.W238G 0.16 tolerated(0.17) benign(0.001) TCGA-B0-5691-01 5 153709212 153709212 T C GALNT10 Missense_Mutation p.L161P 0.15 deleterious(0) probably_damaging(1) TCGA-B0-5691-01 6 168344647 168344647 G T MLLT4 Missense_Mutation p.S1082I 0.21 deleterious(0) possibly_damaging(0.462) TCGA-B0-5691-01 6 2836102 2836102 C T SERPINB1 Silent p.T241T 0.27 TCGA-B0-5691-01 6 29141782 29141782 T C OR2J2 Missense_Mutation p.Y124H 0.23 deleterious(0.01) possibly_damaging(0.49) TCGA-B0-5691-01 6 43019452 43019452 C G CUL7 Missense_Mutation p.E294D 0.19 deleterious(0) probably_damaging(0.986) TCGA-B0-5691-01 7 101926034 101926034 A T SH2B2 5'Flank 0.22 TCGA-B0-5691-01 7 120782148 120782148 C T CPED1 Missense_Mutation p.P670S 0.26 deleterious(0) probably_damaging(0.997) TCGA-B0-5691-01 7 36445891 36445891 G A ANLN Missense_Mutation p.G197S 0.07 deleterious(0) probably_damaging(0.999) TCGA-B0-5691-01 8 116426628 116426655 CAACAGCTGAAAAATGAGGAGGCAGATT - TRPS1 Frame_Shift_Del p.N1161Dfs*8 0.09 TCGA-B0-5691-01 8 86037088 86037088 A C LRRCC1 Missense_Mutation p.N396H 0.20 tolerated(0.07) possibly_damaging(0.519) TCGA-B0-5691-01 9 134379711 134379711 T C POMT1 Missense_Mutation p.Y36H 0.21 tolerated(0.24) probably_damaging(1) TCGA-B0-5691-01 9 135202188 135202190 AAA - SETX In_Frame_Del p.F1599del 0.25 TCGA-B0-5691-01 9 74526670 74526670 A T C9orf85 Missense_Mutation p.N7I 0.17 deleterious(0) probably_damaging(1) TCGA-B0-5691-01 X 10180545 10180545 C T CLCN4 Silent p.G476G 0.18 TCGA-B0-5691-01 X 119005937 119005937 G A NDUFA1 Silent p.L21L 0.15 TCGA-B0-5691-01 X 133379666 133379666 G A CCDC160 Missense_Mutation p.S279N 0.18 tolerated(0.7) benign(0.383) TCGA-B0-5691-01 X 154344345 154344345 G A BRCC3 Missense_Mutation p.E213K 0.17 deleterious(0) possibly_damaging(0.657) TCGA-B0-5691-01 X 37028223 37028223 C A FAM47C Silent p.S580S 0.30 TCGA-B0-5691-01 X 78011222 78011222 G T LPAR4 Nonsense_Mutation p.E286* 0.24 TCGA-B0-5692-01 10 103870867 103870868 TG - LDB1 Nonsense_Mutation p.Y69* 0.28 TCGA-B0-5692-01 10 113916968 113916968 T C GPAM Intron 0.23 TCGA-B0-5692-01 10 27702183 27702183 G T PTCHD3 Missense_Mutation p.P333T 0.32 tolerated(0.55) benign(0.219) TCGA-B0-5692-01 10 6143320 6143320 C T RBM17 Silent p.D70D 0.36 TCGA-B0-5692-01 10 68687006 68687006 T C LRRTM3 Missense_Mutation p.L111P 0.05 deleterious(0) probably_damaging(1) TCGA-B0-5692-01 10 94109483 94109483 T G MARCH5 Missense_Mutation p.H203Q 0.26 tolerated(0.34) benign(0.01) TCGA-B0-5692-01 11 65653801 65653801 C T FIBP Silent p.R168R 0.32 TCGA-B0-5692-01 11 85431940 85431940 G A SYTL2 Missense_Mutation p.P830S 0.27 deleterious(0.04) probably_damaging(0.969) TCGA-B0-5692-01 12 100617614 100617614 A G ACTR6 Missense_Mutation p.D371G 0.31 tolerated(0.29) probably_damaging(0.999) TCGA-B0-5692-01 12 14019045 14019045 G A GRIN2B Missense_Mutation p.P33L 0.26 deleterious(0) possibly_damaging(0.781) TCGA-B0-5692-01 12 57396861 57396861 A G ZBTB39 Missense_Mutation p.F614S 0.34 deleterious(0) probably_damaging(0.99) TCGA-B0-5692-01 12 72026187 72026187 T A ZFC3H1 Missense_Mutation p.E975D 0.24 deleterious(0.02) benign(0.339) TCGA-B0-5692-01 12 7981349 7981355 ACTTTCA - SLC2A14 Frame_Shift_Del p.E231Pfs*34 0.14 TCGA-B0-5692-01 13 33016602 33016602 C G N4BP2L2 Missense_Mutation p.R691P 0.35 tolerated(0.17) benign(0) TCGA-B0-5692-01 14 24033327 24033327 T C AP1G2 Missense_Mutation p.D340G 0.45 deleterious(0.04) probably_damaging(0.995) TCGA-B0-5692-01 14 75230717 75230717 C - YLPM1 Frame_Shift_Del p.P177Rfs*42 0.35 TCGA-B0-5692-01 15 41046894 41046894 G T RMDN3 Missense_Mutation p.L30I 0.28 tolerated(0.51) benign(0.341) TCGA-B0-5692-01 15 42500325 42500325 C T VPS39 Silent p.P9P 0.34 TCGA-B0-5692-01 15 49088226 49088228 TTG - CEP152 In_Frame_Del p.Q224del 0.25 TCGA-B0-5692-01 15 59415824 59415824 A T CCNB2 Missense_Mutation p.I362F 0.27 deleterious(0.02) benign(0.278) TCGA-B0-5692-01 15 79059785 79059785 G A ADAMTS7 Missense_Mutation p.T932I 0.25 deleterious(0.02) benign(0.044) TCGA-B0-5692-01 15 79264229 79264229 G A RASGRF1 Silent p.Y1236Y 0.27 TCGA-B0-5692-01 16 14304164 14304164 A G MKL2 Silent p.P73P 0.20 TCGA-B0-5692-01 16 1994677 1994677 C A RPL3L 3'UTR 0.17 TCGA-B0-5692-01 16 4776983 4776983 G C ANKS3 Silent p.L122L 0.44 TCGA-B0-5692-01 16 68845698 68845698 A G CDH1 Missense_Mutation p.N315S 0.21 tolerated(0.36) benign(0.001) TCGA-B0-5692-01 16 88498466 88498466 C T ZNF469 Missense_Mutation p.P1502S 0.27 benign(0.001) TCGA-B0-5692-01 17 10253892 10253892 C T MYH13 Silent p.A375A 0.41 TCGA-B0-5692-01 17 36943164 36943164 G A PIP4K2B Silent p.L57L 0.29 TCGA-B0-5692-01 17 4391254 4391254 G T SPNS3 3'UTR 0.43 TCGA-B0-5692-01 17 44248932 44248933 - T KANSL1 Frame_Shift_Ins p.M193Nfs*5 0.09 TCGA-B0-5692-01 17 48266574 48266574 A G COL1A1 Silent p.P964P 0.19 TCGA-B0-5692-01 18 9570186 9570186 T A PPP4R1 Silent p.L514L 0.24 TCGA-B0-5692-01 19 36504305 36504305 C T ALKBH6 Missense_Mutation p.V27M 0.23 tolerated_low_confidence(0.14) benign(0.042) TCGA-B0-5692-01 19 55174375 55174375 C A LILRB4 5'UTR 0.35 TCGA-B0-5692-01 19 58805702 58805702 C G ZNF8 Silent p.L176L 0.26 TCGA-B0-5692-01 19 8183824 8183825 AC - FBN3 Frame_Shift_Del p.C1098Sfs*5 0.34 TCGA-B0-5692-01 1 103355037 103355037 C T COL11A1 Missense_Mutation p.G1480R 0.29 unknown(0) TCGA-B0-5692-01 1 12726742 12726742 T C AADACL4 Missense_Mutation p.I407T 0.10 deleterious(0) possibly_damaging(0.691) TCGA-B0-5692-01 1 152130381 152130381 T A RPTN 5'UTR 0.31 TCGA-B0-5692-01 1 158812131 158812131 A G MNDA Missense_Mutation p.D63G 0.15 tolerated(0.77) possibly_damaging(0.655) TCGA-B0-5692-01 1 159796590 159796590 A G SLAMF8 5'UTR 0.33 TCGA-B0-5692-01 1 159811018 159811018 G T C1orf204 Missense_Mutation p.P114T 0.23 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-B0-5692-01 1 226108045 226108045 C A PYCR2 3'UTR 0.30 TCGA-B0-5692-01 1 27057952 27057952 C - ARID1A Frame_Shift_Del p.P554Hfs*65 0.31 TCGA-B0-5692-01 1 28081734 28081734 C A FAM76A Missense_Mutation p.P244T 0.26 tolerated(0.32) probably_damaging(0.999) TCGA-B0-5692-01 1 32377374 32377374 C T PTP4A2 Nonsense_Mutation p.W81* 0.28 TCGA-B0-5692-01 1 35227533 35227533 C T GJB4 Silent p.C226C 0.32 TCGA-B0-5692-01 1 37271904 37271904 C A GRIK3 Missense_Mutation p.E705D 0.25 tolerated(0.21) benign(0.007) TCGA-B0-5692-01 1 40661376 40661376 G A RLF Missense_Mutation p.V183M 0.23 deleterious(0.02) benign(0.015) TCGA-B0-5692-01 21 19629058 19629058 G A CHODL Nonsense_Mutation p.W104* 0.28 TCGA-B0-5692-01 22 39917910 39917912 GTG - ATF4 In_Frame_Del p.C120_D121delinsY 0.36 TCGA-B0-5692-01 22 43599960 43599960 C T SCUBE1 3'UTR 0.25 TCGA-B0-5692-01 22 45779436 45779436 T G SMC1B Missense_Mutation p.S657R 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-B0-5692-01 2 160994692 160994692 C G ITGB6 Missense_Mutation p.E376Q 0.23 deleterious(0.04) probably_damaging(0.989) TCGA-B0-5692-01 2 192228923 192228923 C A MYO1B Nonsense_Mutation p.S318* 0.20 TCGA-B0-5692-01 2 69034592 69034592 G A ARHGAP25 Silent p.G218G 0.27 TCGA-B0-5692-01 2 85578126 85578126 C A RETSAT Missense_Mutation p.R125L 0.32 deleterious(0.02) benign(0.258) TCGA-B0-5692-01 3 10191528 10191529 - TT VHL Frame_Shift_Ins p.Y175Ffs*28 0.36 TCGA-B0-5692-01 3 50378855 50378855 C A ZMYND10 Missense_Mutation p.D437Y 0.39 deleterious(0.04) benign(0.17) TCGA-B0-5692-01 4 129128464 129128464 A G LARP1B Missense_Mutation p.K825E 0.26 deleterious(0.01) benign(0.033) TCGA-B0-5692-01 4 170321451 170321451 T - NEK1 Frame_Shift_Del p.I1258Ffs*16 0.21 TCGA-B0-5692-01 4 1746754 1746754 G T TACC3 3'UTR 0.39 TCGA-B0-5692-01 4 85674870 85674870 T C WDFY3 Missense_Mutation p.I1907V 0.27 tolerated(0.34) benign(0.014) TCGA-B0-5692-01 5 131321125 131321125 A - ACSL6 Frame_Shift_Del p.I297Mfs*30 0.30 TCGA-B0-5692-01 5 139217290 139217290 G A PSD2 Silent p.R582R 0.22 TCGA-B0-5692-01 5 33989521 33989521 C T AMACR Missense_Mutation p.A276T 0.38 tolerated(0.21) possibly_damaging(0.454) TCGA-B0-5692-01 5 39376876 39376876 T A DAB2 Silent p.G671G 0.26 TCGA-B0-5692-01 6 111912795 111912796 - T TRAF3IP2 Frame_Shift_Ins p.N165Kfs*10 0.38 TCGA-B0-5692-01 6 17556592 17556592 A G CAP2 Silent p.R451R 0.25 TCGA-B0-5692-01 6 35212548 35212548 C T SCUBE3 Silent p.S787S 0.23 TCGA-B0-5692-01 6 4069047 4069058 CTTTTTGGTCCC - FAM217A In_Frame_Del p.G467_K470del 0.19 TCGA-B0-5692-01 6 52764776 52764776 T G GSTA3 Missense_Mutation p.I124L 0.27 tolerated(0.06) benign(0.004) TCGA-B0-5692-01 7 129845266 129845266 A T TMEM209 5'UTR 0.26 TCGA-B0-5692-01 7 149485496 149485496 G A SSPO RNA 0.29 TCGA-B0-5692-01 7 20685684 20685686 TAT AA ABCB5 Frame_Shift_Del p.Y302Kfs*11 0.15 TCGA-B0-5692-01 7 27203168 27203168 G C HOXA9 3'UTR 0.31 TCGA-B0-5692-01 7 30701795 30701795 G T CRHR2 Silent p.G272G 0.30 TCGA-B0-5692-01 8 104933998 104933998 T C RIMS2 Missense_Mutation p.S728P 0.25 tolerated_low_confidence(1) benign(0.396) TCGA-B0-5692-01 8 12870213 12870216 CTTA - KIAA1456 Frame_Shift_Del p.L59Kfs*2 0.21 TCGA-B0-5692-01 8 2005831 2005831 G A MYOM2 Missense_Mutation p.V165I 0.30 tolerated(0.08) benign(0.129) TCGA-B0-5692-01 8 21903771 21903771 C A FGF17 Silent p.I73I 0.27 TCGA-B0-5692-01 8 37693252 37693252 C G GPR124 Missense_Mutation p.R672G 0.42 deleterious(0) possibly_damaging(0.852) TCGA-B0-5692-01 9 84609412 84609412 C T SPATA31D1 Nonsense_Mutation p.Q1343* 0.28 TCGA-B0-5692-01 X 139038512 139038512 G T CXorf66 Missense_Mutation p.P210H 0.37 deleterious(0.03) probably_damaging(0.979) TCGA-B0-5693-01 10 115614767 115614767 G A NHLRC2 Missense_Mutation p.D46N 0.19 deleterious(0.01) benign(0.067) TCGA-B0-5693-01 10 17195591 17195591 T C TRDMT1 Silent p.E330E 0.29 TCGA-B0-5693-01 10 55587279 55587279 C T PCDH15 Missense_Mutation p.R1414Q 0.24 deleterious(0.03) benign(0.298) TCGA-B0-5693-01 11 103229065 103229065 A G DYNC2H1 Missense_Mutation p.N4052S 0.28 benign(0.002) TCGA-B0-5693-01 11 113683084 113683084 A C USP28 Missense_Mutation p.V629G 0.05 deleterious(0) benign(0.309) TCGA-B0-5693-01 11 122931975 122931975 C G HSPA8 Missense_Mutation p.V20L 0.25 deleterious_low_confidence(0.01) benign(0.221) TCGA-B0-5693-01 11 64573234 64573234 T - MEN1 Frame_Shift_Del p.Y358Sfs*15 0.36 TCGA-B0-5693-01 11 65792685 65792685 T G CATSPER1 Missense_Mutation p.K389T 0.33 tolerated(0.15) benign(0.189) TCGA-B0-5693-01 11 8494714 8494714 A T STK33 Missense_Mutation p.I112N 0.03 deleterious(0) probably_damaging(0.954) TCGA-B0-5693-01 12 28636996 28636996 G T CCDC91 Missense_Mutation p.K371N 0.25 deleterious(0) possibly_damaging(0.588) TCGA-B0-5693-01 12 50745987 50746022 AGAGGGATCCCCAATTCCTGAGCCTGCGGAGGGATC - FAM186A In_Frame_Del p.I1532_L1543del 0.24 TCGA-B0-5693-01 13 20797320 20797320 G T GJB6 Missense_Mutation p.H100Q 0.24 tolerated(0.2) benign(0.007) TCGA-B0-5693-01 14 21868737 21868737 G T CHD8 Missense_Mutation p.R1469S 0.03 deleterious(0) benign(0.267) TCGA-B0-5693-01 14 69356966 69356966 T G ACTN1 Missense_Mutation p.E375A 0.30 deleterious(0) probably_damaging(0.998) TCGA-B0-5693-01 15 43569077 43569082 ATTGAT - TGM7 In_Frame_Del p.I651_N652del 0.16 TCGA-B0-5693-01 16 21269906 21269906 G A CRYM 3'UTR 0.33 TCGA-B0-5693-01 16 31309149 31309149 G - ITGAM Frame_Shift_Del p.D530Tfs*2 0.23 TCGA-B0-5693-01 16 67916780 67916780 G A EDC4 Intron 0.36 TCGA-B0-5693-01 16 88688681 88688681 C A ZC3H18 Missense_Mutation p.P518T 0.25 deleterious_low_confidence(0) unknown(0) TCGA-B0-5693-01 17 30806900 30806900 C T PSMD11 Missense_Mutation p.S357F 0.33 deleterious(0) benign(0.367) TCGA-B0-5693-01 17 37681129 37681129 G A CDK12 Missense_Mutation p.D1100N 0.27 possibly_damaging(0.632) TCGA-B0-5693-01 17 44116407 44116407 G C KANSL1 Missense_Mutation p.S793C 0.30 tolerated(0.2) possibly_damaging(0.698) TCGA-B0-5693-01 18 55233773 55233773 A G FECH Silent p.P174P 0.44 TCGA-B0-5693-01 18 74563827 74563827 G A ZNF236 Missense_Mutation p.V97M 0.06 tolerated(0.07) probably_damaging(0.992) TCGA-B0-5693-01 19 33359494 33359494 G T SLC7A9 5'UTR 0.20 TCGA-B0-5693-01 19 4950715 4950715 G T UHRF1 RNA 0.12 TCGA-B0-5693-01 19 56274095 56274095 G A RFPL4A Missense_Mutation p.V140I 0.24 tolerated(0.09) benign(0.303) TCGA-B0-5693-01 1 179057120 179057120 G C TOR3A Missense_Mutation p.E238D 0.29 tolerated(0.65) possibly_damaging(0.831) TCGA-B0-5693-01 1 70618119 70618119 A C LRRC40 Missense_Mutation p.L479R 0.30 deleterious(0) probably_damaging(0.979) TCGA-B0-5693-01 1 93649561 93649561 A G CCDC18 Missense_Mutation p.Y108C 0.32 tolerated(0.08) benign(0.007) TCGA-B0-5693-01 20 18794966 18794966 T C SCP2D1 3'UTR 0.28 TCGA-B0-5693-01 20 2779142 2779142 T C CPXM1 Missense_Mutation p.S128G 0.43 tolerated(0.57) benign(0.001) TCGA-B0-5693-01 22 20049085 20049085 A G TANGO2 Missense_Mutation p.T162A 0.11 deleterious(0.02) possibly_damaging(0.824) TCGA-B0-5693-01 2 179398617 179398617 T C TTN Missense_Mutation p.K34242R 0.38 TCGA-B0-5693-01 2 202672661 202672661 C A CDK15 Nonsense_Mutation p.Y118* 0.04 TCGA-B0-5693-01 3 10188294 10188295 - T VHL Frame_Shift_Ins p.I147Yfs*27 0.25 TCGA-B0-5693-01 3 107097368 107097368 A G CCDC54 Missense_Mutation p.N312D 0.28 deleterious(0.01) possibly_damaging(0.891) TCGA-B0-5693-01 3 119242475 119242475 G T TIMMDC1 Nonsense_Mutation p.E244* 0.29 TCGA-B0-5693-01 3 52649440 52649440 T - PBRM1 Frame_Shift_Del p.L617Ffs*25 0.33 TCGA-B0-5693-01 3 88104822 88104822 C G CGGBP1 Missense_Mutation p.S102T 0.32 tolerated(0.86) benign(0.015) TCGA-B0-5693-01 5 107703606 107703606 C G FBXL17 Missense_Mutation p.V348L 0.25 deleterious(0) probably_damaging(0.983) TCGA-B0-5693-01 5 112899759 112899759 T C YTHDC2 Silent p.A882A 0.23 TCGA-B0-5693-01 7 45725770 45725770 G A ADCY1 Silent p.T761T 0.42 TCGA-B0-5693-01 7 57529052 57529052 C T ZNF716 Silent p.P295P 0.09 TCGA-B0-5693-01 8 124792237 124792237 C - FAM91A1 Frame_Shift_Del p.P188Lfs*20 0.21 TCGA-B0-5693-01 9 112918733 112918733 G T PALM2-AKAP2 Nonsense_Mutation p.E1044* 0.31 TCGA-B0-5693-01 9 125746890 125746903 GATGGGCCTCTTTC - RABGAP1 Frame_Shift_Del p.D93* 0.18 TCGA-B0-5693-01 9 86276810 86276810 G C UBQLN1 Silent p.L554L 0.30 TCGA-B0-5693-01 9 91931300 91931300 T G CKS2 Missense_Mutation p.L67R 0.24 deleterious(0) probably_damaging(0.999) TCGA-B0-5693-01 X 152159503 152159503 C T PNMA5 Missense_Mutation p.V214M 0.17 tolerated(0.1) benign(0.135) TCGA-B0-5693-01 X 99551562 99551562 C - PCDH19 Frame_Shift_Del p.E1054Rfs*76 0.38 TCGA-B0-5694-01 10 120900805 120900805 T A SFXN4 Missense_Mutation p.K321N 0.31 deleterious(0.04) benign(0.063) TCGA-B0-5694-01 10 135101707 135101707 G A TUBGCP2 Missense_Mutation p.R578C 0.31 deleterious(0) probably_damaging(0.954) TCGA-B0-5694-01 10 61665922 61665922 C T CCDC6 Silent p.L87L 0.13 TCGA-B0-5694-01 10 75557166 75557168 AAC - ZSWIM8 In_Frame_Del p.T1157del 0.34 TCGA-B0-5694-01 10 96954310 96954310 A T C10orf129 Missense_Mutation p.Y23F 0.32 tolerated(0.69) benign(0.042) TCGA-B0-5694-01 11 285235 285235 T A NLRP6 Missense_Mutation p.D870E 0.36 tolerated(0.08) benign(0.028) TCGA-B0-5694-01 11 58920102 58920102 A G FAM111A Missense_Mutation p.K321E 0.49 tolerated(0.11) benign(0.004) TCGA-B0-5694-01 11 61563635 61563636 - AC FEN1 Frame_Shift_Ins p.P269Tfs*29 0.30 TCGA-B0-5694-01 11 72396554 72396554 A T ARAP1 3'UTR 0.37 TCGA-B0-5694-01 11 73964584 73964584 C G PPME1 3'UTR 0.32 TCGA-B0-5694-01 12 1005824 1005824 T C WNK1 Silent p.S2057S 0.08 TCGA-B0-5694-01 12 104056744 104056744 C T STAB2 Nonsense_Mutation p.R664* 0.03 TCGA-B0-5694-01 12 104335645 104335645 C T HSP90B1 Silent p.R448R 0.05 TCGA-B0-5694-01 12 124408962 124408962 C - DNAH10 Frame_Shift_Del p.Q3799Rfs*47 0.25 TCGA-B0-5694-01 12 49440459 49440459 T A KMT2D Missense_Mutation p.S1451C 0.26 probably_damaging(0.999) TCGA-B0-5694-01 12 99007799 99007799 A G IKBIP Missense_Mutation p.V206A 0.35 tolerated(1) benign(0.009) TCGA-B0-5694-01 14 100996232 100996232 G T WDR25 Missense_Mutation p.V497F 0.36 deleterious(0.04) possibly_damaging(0.89) TCGA-B0-5694-01 14 22309720 22309720 T A TRAV12-1 Missense_Mutation p.V34D 0.36 deleterious(0.01) possibly_damaging(0.795) TCGA-B0-5694-01 14 34269022 34269022 G A NPAS3 Silent p.S503S 0.08 TCGA-B0-5694-01 15 89859678 89859678 A G FANCI Silent p.K1325K 0.22 TCGA-B0-5694-01 16 1509163 1509163 G A CLCN7 Missense_Mutation p.P207L 0.41 deleterious(0) probably_damaging(0.969) TCGA-B0-5694-01 16 30750868 30750868 A G SRCAP Silent p.V3169V 0.20 TCGA-B0-5694-01 16 48596270 48596270 T G N4BP1 Missense_Mutation p.E95A 0.22 deleterious(0) benign(0.012) TCGA-B0-5694-01 16 84103636 84103636 T - MBTPS1 Frame_Shift_Del p.N597Mfs*9 0.15 TCGA-B0-5694-01 17 12647585 12647585 A G MYOCD Missense_Mutation p.Y268C 0.39 deleterious(0) probably_damaging(1) TCGA-B0-5694-01 17 33498340 33498340 G C UNC45B Splice_Site p.X566_splice 0.28 TCGA-B0-5694-01 17 36091725 36091725 G C HNF1B Missense_Mutation p.N302K 0.35 deleterious(0) probably_damaging(0.93) TCGA-B0-5694-01 17 38420798 38420798 A G WIPF2 Missense_Mutation p.R124G 0.18 deleterious(0) probably_damaging(0.997) TCGA-B0-5694-01 17 74562178 74562178 C T ST6GALNAC2 3'UTR 0.29 TCGA-B0-5694-01 17 79288241 79288241 C - TMEM105 Frame_Shift_Del p.A8Rfs*3 0.25 TCGA-B0-5694-01 18 21140211 21140211 C A NPC1 Missense_Mutation p.A289S 0.32 tolerated(0.53) benign(0.071) TCGA-B0-5694-01 18 33557546 33557546 C A C18orf21 Missense_Mutation p.S158R 0.32 deleterious(0.02) benign(0.191) TCGA-B0-5694-01 18 51809374 51809374 G - POLI Frame_Shift_Del p.G322Dfs*33 0.21 TCGA-B0-5694-01 19 17952457 17952457 G C JAK3 Missense_Mutation p.Q326E 0.27 tolerated(0.1) benign(0.003) TCGA-B0-5694-01 1 151342244 151342244 A C SELENBP1 Silent p.A2A 0.26 TCGA-B0-5694-01 1 16353083 16353083 G A CLCNKA Missense_Mutation p.R184H 0.24 tolerated(0.54) benign(0.032) TCGA-B0-5694-01 1 185984500 185984500 G C HMCN1 Missense_Mutation p.A1614P 0.31 probably_damaging(0.944) TCGA-B0-5694-01 1 196801227 196801227 G T CFHR1 3'UTR 0.71 TCGA-B0-5694-01 1 223285445 223285445 G A TLR5 Missense_Mutation p.T310I 0.30 tolerated(0.12) benign(0.077) TCGA-B0-5694-01 1 37975131 37975131 G A MEAF6 Silent p.S73S 0.30 TCGA-B0-5694-01 20 1460664 1460664 G T SIRPB2 Silent p.P44P 0.41 TCGA-B0-5694-01 20 49367001 49367001 A T PARD6B Missense_Mutation p.E365D 0.35 deleterious_low_confidence(0) benign(0.389) TCGA-B0-5694-01 21 31863890 31863891 AA - KRTAP19-3 3'UTR 0.29 TCGA-B0-5694-01 21 35467345 35467345 A G SLC5A3 5'UTR 0.40 TCGA-B0-5694-01 2 114500419 114500419 C A SLC35F5 Missense_Mutation p.M200I 0.34 tolerated(0.14) benign(0.186) TCGA-B0-5694-01 2 167760331 167760331 C T XIRP2 Silent p.A113A 0.23 TCGA-B0-5694-01 2 179341870 179341870 T G FKBP7 Missense_Mutation p.I98L 0.28 tolerated(0.73) benign(0.223) TCGA-B0-5694-01 2 216184411 216184411 G T ATIC Nonsense_Mutation p.E83* 0.30 TCGA-B0-5694-01 2 233898945 233898945 G C NEU2 Silent p.G107G 0.22 TCGA-B0-5694-01 2 26698883 26698883 C A OTOF Missense_Mutation p.A964S 0.33 deleterious(0.01) probably_damaging(0.947) TCGA-B0-5694-01 2 29917822 29917822 G C ALK Missense_Mutation p.D282E 0.22 tolerated(0.38) benign(0.007) TCGA-B0-5694-01 2 70148882 70148882 A - MXD1 Frame_Shift_Del p.M64Wfs*16 0.23 TCGA-B0-5694-01 2 86719365 86719365 T C KDM3A 3'UTR 0.07 TCGA-B0-5694-01 3 121438533 121438550 TGAAGAAGCTCATCTTCA - GOLGB1 In_Frame_Del p.H238_L243del 0.19 TCGA-B0-5694-01 3 139279898 139279898 G T NMNAT3 Missense_Mutation p.T201N 0.38 tolerated(0.13) benign(0.013) TCGA-B0-5694-01 3 16630109 16630109 C T DAZL 3'UTR 0.42 TCGA-B0-5694-01 3 186505633 186505633 T G EIF4A2 Missense_Mutation p.N347K 0.30 deleterious(0) probably_damaging(0.999) TCGA-B0-5694-01 3 39229862 39229862 C T XIRP1 Missense_Mutation p.G359R 0.41 deleterious(0) probably_damaging(0.989) TCGA-B0-5694-01 3 52692235 52692235 G A PBRM1 Nonsense_Mutation p.Q209* 0.52 TCGA-B0-5694-01 4 47840012 47840012 G T CORIN 5'Flank 0.24 TCGA-B0-5694-01 4 47840013 47840013 C T CORIN 5'Flank 0.25 TCGA-B0-5694-01 5 102886534 102886534 A C NUDT12 3'UTR 0.28 TCGA-B0-5694-01 5 124079966 124079966 C G ZNF608 Silent p.G239G 0.50 TCGA-B0-5694-01 5 138727741 138727741 A G PROB1 Silent p.G1010G 0.09 TCGA-B0-5694-01 5 141028860 141028860 G A FCHSD1 Nonsense_Mutation p.Q131* 0.12 TCGA-B0-5694-01 5 151183616 151183617 - T G3BP1 Frame_Shift_Ins p.G457Wfs*52 0.17 TCGA-B0-5694-01 5 157102208 157102208 G - C5orf52 Frame_Shift_Del 0.18 TCGA-B0-5694-01 5 65465917 65465917 A T SREK1 Missense_Mutation p.D347V 0.28 deleterious(0) unknown(0) TCGA-B0-5694-01 5 94783997 94783997 G C FAM81B Missense_Mutation p.E352Q 0.31 deleterious(0.05) benign(0.269) TCGA-B0-5694-01 6 109769530 109769530 C A MICAL1 Missense_Mutation p.E577D 0.27 deleterious(0.01) probably_damaging(0.963) TCGA-B0-5694-01 6 160211819 160211819 G A MRPL18 Intron 0.34 TCGA-B0-5694-01 6 43221356 43221356 G T TTBK1 Silent p.T127T 0.50 TCGA-B0-5694-01 6 46969278 46969278 T - GPR110 Frame_Shift_Del p.K873Nfs*31 0.26 TCGA-B0-5694-01 6 72960119 72960119 T A RIMS1 Silent p.R776R 0.29 TCGA-B0-5694-01 7 44118355 44118355 C A POLM Missense_Mutation p.R233M 0.30 deleterious(0) probably_damaging(0.999) TCGA-B0-5694-01 7 91632376 91632376 A T AKAP9 Missense_Mutation p.M1049L 0.47 benign(0.012) TCGA-B0-5694-01 8 53853305 53853305 C A NPBWR1 Missense_Mutation p.P280T 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-B0-5694-01 9 109689533 109689533 T C ZNF462 Missense_Mutation p.Y1114H 0.51 probably_damaging(0.994) TCGA-B0-5694-01 9 139701497 139701497 A G CCDC183 Missense_Mutation p.N489D 0.27 tolerated(1) benign(0) TCGA-B0-5694-01 X 149639659 149639659 A T MAMLD1 Missense_Mutation p.Q580L 0.70 deleterious(0.02) benign(0.242) TCGA-B0-5694-01 X 43515580 43515580 C T MAOA 5'UTR 0.30 TCGA-B0-5695-01 10 112360237 112360237 G C SMC3 Missense_Mutation p.G823A 0.38 tolerated(1) benign(0.03) TCGA-B0-5695-01 10 112360239 112360239 A T SMC3 Missense_Mutation p.I824F 0.39 deleterious(0.04) benign(0.034) TCGA-B0-5695-01 10 20106053 20106053 G A PLXDC2 Missense_Mutation p.M15I 0.31 tolerated_low_confidence(0.31) benign(0) TCGA-B0-5695-01 10 70432649 70432649 C G TET1 Intron 0.33 TCGA-B0-5695-01 11 17544964 17544964 A C USH1C Splice_Site p.X273_splice 0.29 TCGA-B0-5695-01 11 18478173 18478173 A G LDHAL6A 5'UTR 0.46 TCGA-B0-5695-01 11 3109542 3109542 G A OSBPL5 Missense_Mutation p.R845W 0.33 deleterious(0.03) possibly_damaging(0.582) TCGA-B0-5695-01 11 32636393 32636393 A T CCDC73 Missense_Mutation p.S491T 0.30 deleterious(0.01) benign(0.066) TCGA-B0-5695-01 11 5699642 5699642 G C TRIM5 Missense_Mutation p.T179S 0.29 deleterious(0.01) benign(0.148) TCGA-B0-5695-01 12 102163955 102163955 A T GNPTAB Missense_Mutation p.N376K 0.36 deleterious(0) probably_damaging(0.996) TCGA-B0-5695-01 12 111089162 111089162 T C HVCN1 Missense_Mutation p.H168R 0.30 deleterious(0.03) possibly_damaging(0.861) TCGA-B0-5695-01 12 15803757 15803757 C G EPS8 Missense_Mutation p.E478D 0.28 deleterious(0.04) possibly_damaging(0.549) TCGA-B0-5695-01 12 22606900 22606900 A - C2CD5 Frame_Shift_Del p.L934* 0.22 TCGA-B0-5695-01 13 49852634 49852634 A C CDADC1 Missense_Mutation p.E400A 0.04 tolerated(0.11) possibly_damaging(0.806) TCGA-B0-5695-01 13 73333892 73333892 T A DIS3 3'UTR 0.35 TCGA-B0-5695-01 14 92470128 92470128 G T TRIP11 Missense_Mutation p.L1398I 0.35 tolerated(0.4) benign(0.117) TCGA-B0-5695-01 14 92470129 92470129 C T TRIP11 Silent p.Q1397Q 0.34 TCGA-B0-5695-01 15 28387457 28387457 C A HERC2 Missense_Mutation p.R3876M 0.48 probably_damaging(0.986) TCGA-B0-5695-01 15 42003437 42003437 C - MGA Frame_Shift_Del p.Q992Rfs*2 0.23 TCGA-B0-5695-01 15 56208589 56208589 A G NEDD4 Silent p.C147C 0.23 TCGA-B0-5695-01 16 70296355 70296355 C - AARS Frame_Shift_Del p.G522Afs*28 0.29 TCGA-B0-5695-01 16 74372753 74372753 T A RP11-252A24.2 RNA 0.31 TCGA-B0-5695-01 17 56284467 56284467 T C MKS1 Silent p.V462V 0.07 TCGA-B0-5695-01 17 57746302 57746303 - T CLTC Splice_Site p.X764_splice 0.26 TCGA-B0-5695-01 17 79094705 79094705 G T AATK Missense_Mutation p.P1011T 0.36 tolerated(0.07) benign(0.035) TCGA-B0-5695-01 19 19791040 19791040 A T ZNF101 Missense_Mutation p.R414S 0.04 deleterious(0.02) possibly_damaging(0.566) TCGA-B0-5695-01 19 33130248 33130248 G A ANKRD27 Intron 0.41 TCGA-B0-5695-01 19 4175108 4175108 T A SIRT6 Missense_Mutation p.I219F 0.60 deleterious(0) probably_damaging(0.953) TCGA-B0-5695-01 19 42930828 42930828 C T LIPE Silent p.A158A 0.43 TCGA-B0-5695-01 19 49147826 49147826 C G CA11 Missense_Mutation p.G48A 0.46 tolerated(0.2) probably_damaging(0.998) TCGA-B0-5695-01 19 49249008 49249008 C A IZUMO1 Nonsense_Mutation p.E37* 0.40 TCGA-B0-5695-01 1 10412718 10412718 G A KIF1B Missense_Mutation p.E1281K 0.33 deleterious(0.04) benign(0.142) TCGA-B0-5695-01 1 120050234 120050234 G C HSD3B1 Missense_Mutation p.E45D 0.36 tolerated(0.12) benign(0.213) TCGA-B0-5695-01 1 152285414 152285414 G T FLG Missense_Mutation p.Q650K 0.05 benign(0.105) TCGA-B0-5695-01 1 155629401 155629401 G A YY1AP1 3'UTR 0.08 TCGA-B0-5695-01 1 16260060 16260060 A T SPEN Missense_Mutation p.E2442V 0.36 benign(0.04) TCGA-B0-5695-01 1 174973753 174973753 C T CACYBP Nonsense_Mutation p.Q7* 0.18 TCGA-B0-5695-01 1 3599704 3599704 T C TP73 Missense_Mutation p.M49T 0.24 deleterious(0.01) benign(0.211) TCGA-B0-5695-01 1 39806216 39806216 C G MACF1 Intron 0.04 TCGA-B0-5695-01 20 42198122 42198122 T C SGK2 Missense_Mutation p.L169P 0.11 deleterious(0) probably_damaging(1) TCGA-B0-5695-01 20 58342420 58342420 G A PHACTR3 Missense_Mutation p.A241T 0.29 tolerated(0.55) benign(0.026) TCGA-B0-5695-01 20 61834018 61834018 A G YTHDF1 Missense_Mutation p.F425S 0.43 deleterious(0) probably_damaging(0.93) TCGA-B0-5695-01 20 744175 744175 A G SLC52A3 Missense_Mutation p.L347P 0.09 deleterious(0) probably_damaging(0.992) TCGA-B0-5695-01 21 36081036 36081036 C G CLIC6 Missense_Mutation p.S550C 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-B0-5695-01 21 45742915 45742915 G A PFKL Missense_Mutation p.V494M 0.64 tolerated(0.11) probably_damaging(0.948) TCGA-B0-5695-01 22 21081564 21081564 G A PI4KA Missense_Mutation p.P1632L 0.17 deleterious(0) probably_damaging(0.986) TCGA-B0-5695-01 22 30736281 30736281 C G SF3A1 Missense_Mutation p.E427Q 0.25 deleterious(0) probably_damaging(0.988) TCGA-B0-5695-01 22 36123112 36123112 G T APOL5 Missense_Mutation p.A333S 0.17 deleterious(0) probably_damaging(0.995) TCGA-B0-5695-01 2 135926271 135926271 C A RAB3GAP1 Missense_Mutation p.P963T 0.37 deleterious(0) possibly_damaging(0.768) TCGA-B0-5695-01 2 192288741 192288741 G A MYO1B 3'UTR 0.32 TCGA-B0-5695-01 2 216211658 216211658 T C ATIC Silent p.I499I 0.38 TCGA-B0-5695-01 2 39564675 39564675 T - MAP4K3 Frame_Shift_Del p.T120Hfs*18 0.27 TCGA-B0-5695-01 2 61019416 61019416 A T PAPOLG Missense_Mutation p.E557D 0.41 tolerated(0.4) benign(0.001) TCGA-B0-5695-01 2 86071563 86071563 G C ST3GAL5 Missense_Mutation p.L322V 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-B0-5695-01 3 10191482 10191482 A T VHL Nonsense_Mutation p.K159* 0.51 TCGA-B0-5695-01 3 14862932 14862932 A G FGD5 Missense_Mutation p.E785G 0.09 deleterious(0) probably_damaging(0.998) TCGA-B0-5695-01 3 48732607 48732607 G T IP6K2 Missense_Mutation p.L40M 0.55 deleterious(0) benign(0.209) TCGA-B0-5695-01 3 52682446 52682462 TGTAGCTTCCATTCTAC - PBRM1 Splice_Site p.X239_splice 0.26 TCGA-B0-5695-01 4 144106648 144106648 G A USP38 Silent p.L15L 0.29 TCGA-B0-5695-01 4 174448290 174448290 A T HAND2 3'UTR 0.36 TCGA-B0-5695-01 5 127673799 127673799 T A FBN2 Missense_Mutation p.E1163V 0.26 tolerated(0.09) benign(0.395) TCGA-B0-5695-01 5 821993 821993 C T ZDHHC11 Silent p.P347P 0.07 TCGA-B0-5695-01 6 117739636 117739636 G T ROS1 Missense_Mutation p.L53M 0.06 deleterious(0.04) benign(0.11) TCGA-B0-5695-01 6 129588309 129588309 C T LAMA2 Missense_Mutation p.P756L 0.29 tolerated(0.07) benign(0.007) TCGA-B0-5695-01 6 159420742 159420742 A T RSPH3 Silent p.G89G 0.29 TCGA-B0-5695-01 7 117874795 117874795 T C ANKRD7 Missense_Mutation p.L112P 0.36 deleterious(0) probably_damaging(1) TCGA-B0-5695-01 7 133812165 133812165 T C LRGUK Silent p.S15S 0.25 TCGA-B0-5695-01 7 138822685 138822685 G A TTC26 Silent p.E78E 0.38 TCGA-B0-5695-01 7 156518213 156518213 A G LMBR1 Silent p.L358L 0.31 TCGA-B0-5695-01 7 20193894 20193894 C G MACC1 Missense_Mutation p.K756N 0.05 deleterious(0) probably_damaging(0.999) TCGA-B0-5695-01 7 4780487 4780487 C T FOXK1 Silent p.P193P 0.28 TCGA-B0-5695-01 7 66474585 66474585 C A TYW1 Missense_Mutation p.L97I 0.33 deleterious(0.02) probably_damaging(1) TCGA-B0-5695-01 7 76829078 76829078 T C FGL2 Silent p.S11S 0.39 TCGA-B0-5695-01 7 99631591 99631591 C G ZKSCAN1 Missense_Mutation p.P488R 0.25 deleterious(0) probably_damaging(1) TCGA-B0-5695-01 8 100847487 100847487 C G VPS13B Missense_Mutation p.P3251R 0.24 tolerated(0.08) possibly_damaging(0.804) TCGA-B0-5695-01 8 1728492 1728492 T A CLN8 Missense_Mutation p.L207Q 0.60 deleterious(0) probably_damaging(0.988) TCGA-B0-5695-01 8 22398404 22398404 C T PPP3CC 3'UTR 0.44 TCGA-B0-5695-01 8 53586507 53586507 A T RB1CC1 Missense_Mutation p.D300E 0.58 tolerated(0.22) benign(0.005) TCGA-B0-5695-01 9 135139780 135139780 T C SETX Missense_Mutation p.E2627G 0.09 tolerated_low_confidence(1) benign(0) TCGA-B0-5695-01 9 135863634 135863634 G T GFI1B Missense_Mutation p.D97Y 0.35 deleterious(0.01) benign(0.075) TCGA-B0-5695-01 9 136029453 136029453 C A GBGT1 Missense_Mutation p.E185D 0.33 deleterious(0.04) possibly_damaging(0.46) TCGA-B0-5695-01 9 20622316 20622316 C A MLLT3 5'UTR 0.04 TCGA-B0-5695-01 9 8500875 8500875 A T PTPRD Silent p.T669T 0.40 TCGA-B0-5695-01 X 101970788 101970788 G T GPRASP2 Nonsense_Mutation p.E331* 0.06 TCGA-B0-5695-01 X 107304759 107304759 C T VSIG1 Silent p.T105T 0.18 TCGA-B0-5695-01 X 114425790 114425790 G A RBMXL3 Missense_Mutation p.G596S 0.18 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-B0-5695-01 X 122769988 122769988 G C THOC2 Missense_Mutation p.P654A 0.25 tolerated(0.1) benign(0.434) TCGA-B0-5696-01 10 12009344 12009344 A G UPF2 Missense_Mutation p.L688S 0.24 deleterious(0) probably_damaging(0.998) TCGA-B0-5696-01 10 129906188 129906188 C A MKI67 Nonsense_Mutation p.E1306* 0.10 TCGA-B0-5696-01 10 16957110 16957110 A G CUBN Silent p.N2424N 0.23 TCGA-B0-5696-01 10 22023041 22023041 A C MLLT10 Silent p.P947P 0.21 TCGA-B0-5696-01 10 26377180 26377180 G T MYO3A Missense_Mutation p.V470L 0.07 tolerated(0.13) benign(0.019) TCGA-B0-5696-01 11 26558968 26558968 T C ANO3 Missense_Mutation p.I331T 0.26 deleterious(0) benign(0.248) TCGA-B0-5696-01 11 55944821 55944821 C G OR5J2 Missense_Mutation p.S243C 0.26 deleterious(0) probably_damaging(1) TCGA-B0-5696-01 12 20801757 20801757 G T PDE3A Missense_Mutation p.V901F 0.33 deleterious(0) probably_damaging(0.995) TCGA-B0-5696-01 12 49065653 49065653 C A KANSL2 Missense_Mutation p.R213L 0.05 deleterious(0) probably_damaging(0.969) TCGA-B0-5696-01 12 50571222 50571222 T C LIMA1 Silent p.Q636Q 0.21 TCGA-B0-5696-01 12 50748623 50748623 A C FAM186A Missense_Mutation p.S664R 0.22 deleterious(0.05) benign(0.335) TCGA-B0-5696-01 12 52825790 52825791 - T KRT75 Frame_Shift_Ins p.D259Gfs*31 0.08 TCGA-B0-5696-01 13 88329572 88329572 G T SLITRK5 Missense_Mutation p.L643F 0.16 tolerated(0.73) benign(0) TCGA-B0-5696-01 13 95859006 95859006 G C ABCC4 Missense_Mutation p.S314C 0.21 deleterious(0) probably_damaging(0.992) TCGA-B0-5696-01 13 99092447 99092447 A G FARP1 Missense_Mutation p.S863G 0.09 tolerated(1) benign(0) TCGA-B0-5696-01 15 42837393 42837393 C A LRRC57 Missense_Mutation p.C187F 0.09 deleterious(0) probably_damaging(0.999) TCGA-B0-5696-01 15 44964245 44964245 C A PATL2 Missense_Mutation p.A209S 0.34 deleterious(0.04) benign(0.05) TCGA-B0-5696-01 15 90348359 90348359 T C ANPEP Missense_Mutation p.I283V 0.25 tolerated(0.33) benign(0.04) TCGA-B0-5696-01 16 27455987 27455987 A G IL21R Missense_Mutation p.Q211R 0.25 tolerated(0.73) benign(0.009) TCGA-B0-5696-01 17 48647166 48647166 T A CACNA1G Splice_Site p.X196_splice 0.32 TCGA-B0-5696-01 17 71205829 71205829 C G FAM104A Missense_Mutation p.E155Q 0.30 deleterious(0.02) probably_damaging(0.991) TCGA-B0-5696-01 17 71415436 71415436 G T SDK2 Silent p.L685L 0.25 TCGA-B0-5696-01 17 78727975 78727975 G A RPTOR Missense_Mutation p.A274T 0.33 deleterious(0) probably_damaging(0.998) TCGA-B0-5696-01 17 79977055 79977055 G T STRA13 3'UTR 0.38 TCGA-B0-5696-01 17 80041659 80041659 G A FASN Missense_Mutation p.T1736M 0.33 deleterious(0) probably_damaging(1) TCGA-B0-5696-01 18 59821799 59821799 C G PIGN Silent p.T176T 0.27 TCGA-B0-5696-01 18 67742714 67742714 G A RTTN Missense_Mutation p.L1480F 0.22 deleterious(0) probably_damaging(0.999) TCGA-B0-5696-01 19 31770507 31770507 G A TSHZ3 Silent p.A64A 0.34 TCGA-B0-5696-01 19 33077619 33077619 A G PDCD5 Intron 0.14 TCGA-B0-5696-01 19 36504275 36504275 G T ALKBH6 Missense_Mutation p.P37T 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-B0-5696-01 19 41601828 41601828 G T CYP2A13 Missense_Mutation p.M489I 0.10 tolerated(0.39) benign(0.03) TCGA-B0-5696-01 19 6714022 6714022 C A C3 Nonsense_Mutation p.E252* 0.17 TCGA-B0-5696-01 19 7573131 7573131 C T C19orf45 Missense_Mutation p.R445C 0.27 deleterious(0.03) benign(0.193) TCGA-B0-5696-01 1 11217230 11217230 C T MTOR Missense_Mutation p.C1483Y 0.22 deleterious(0) probably_damaging(0.994) TCGA-B0-5696-01 1 201860697 201860697 G T SHISA4 Splice_Site p.X183_splice 0.28 TCGA-B0-5696-01 1 27695848 27695852 CGGTA - FCN3 Frame_Shift_Del p.Y259Ifs*11 0.26 TCGA-B0-5696-01 1 9019022 9019022 T C CA6 Silent p.D154D 0.27 TCGA-B0-5696-01 20 33337538 33337538 A G NCOA6 Silent p.D820D 0.23 TCGA-B0-5696-01 22 17449242 17449242 T A GAB4 Silent p.G323G 0.25 TCGA-B0-5696-01 22 51143424 51143425 - A SHANK3 Frame_Shift_Ins p.Q661Afs*55 0.28 TCGA-B0-5696-01 2 170411720 170411720 T C FASTKD1 Silent p.L376L 0.24 TCGA-B0-5696-01 2 73651859 73651859 T A ALMS1 Missense_Mutation p.W356R 0.23 benign(0) TCGA-B0-5696-01 3 10191479 10191480 - T VHL Frame_Shift_Ins p.K159Efs*15 0.30 TCGA-B0-5696-01 3 52643401 52643401 T - PBRM1 Frame_Shift_Del p.N832Ifs*23 0.30 TCGA-B0-5696-01 4 123868400 123868400 G T SPATA5 Nonsense_Mutation p.G491* 0.22 TCGA-B0-5696-01 4 139994664 139994664 G A ELF2 Missense_Mutation p.A99V 0.05 deleterious(0) probably_damaging(0.999) TCGA-B0-5696-01 5 109110522 109110522 G C MAN2A1 Missense_Mutation p.K410N 0.23 deleterious(0) probably_damaging(0.942) TCGA-B0-5696-01 5 127645724 127645724 G A FBN2 Silent p.C1717C 0.09 TCGA-B0-5696-01 5 128441025 128441025 G C ISOC1 Missense_Mutation p.E193Q 0.14 tolerated(0.21) benign(0.003) TCGA-B0-5696-01 5 139889648 139889648 T G ANKHD1 Missense_Mutation p.L1329R 0.14 probably_damaging(0.928) TCGA-B0-5696-01 5 14601213 14601214 TT A FAM105A Nonsense_Mutation p.Y68* 0.18 TCGA-B0-5696-01 5 151784191 151784191 G A NMUR2 Missense_Mutation p.R162W 0.09 deleterious(0) probably_damaging(1) TCGA-B0-5696-01 5 70856036 70856036 A C BDP1 Missense_Mutation p.T2490P 0.20 tolerated(0.12) benign(0.006) TCGA-B0-5696-01 6 102250221 102250221 C G GRIK2 Missense_Mutation p.L371V 0.05 deleterious(0) possibly_damaging(0.904) TCGA-B0-5696-01 6 168349093 168349093 T G MLLT4 Missense_Mutation p.W1249G 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-B0-5696-01 6 42832809 42832809 G A GLTSCR1L Silent p.L955L 0.31 TCGA-B0-5696-01 6 44240820 44240820 C T TMEM151B Silent p.P51P 0.26 TCGA-B0-5696-01 6 52850359 52850361 TTG - GSTA4 In_Frame_Del p.Q54del 0.23 TCGA-B0-5696-01 7 121651686 121651686 G A PTPRZ1 Silent p.V862V 0.23 TCGA-B0-5696-01 7 126079080 126079080 C T GRM8 3'UTR 0.29 TCGA-B0-5696-01 7 94881334 94881334 A T PPP1R9A Missense_Mutation p.N853Y 0.22 deleterious(0.01) probably_damaging(1) TCGA-B0-5696-01 8 145559803 145559803 A G SCRT1 Missense_Mutation p.V10A 0.31 deleterious(0.03) benign(0.064) TCGA-B0-5696-01 9 116931616 116931616 C T COL27A1 Missense_Mutation p.P594L 0.24 unknown(0) TCGA-B0-5696-01 9 133729596 133729596 T G ABL1 Missense_Mutation p.S94R 0.38 tolerated(0.37) probably_damaging(0.999) TCGA-B0-5696-01 X 123838862 123838862 C A TENM1 Splice_Site p.X339_splice 0.43 TCGA-B0-5696-01 X 12817354 12817354 G A PRPS2 Missense_Mutation p.E51K 0.08 tolerated(0.27) benign(0.326) TCGA-B0-5696-01 X 153649048 153649048 C G TAZ Missense_Mutation p.R251G 0.39 tolerated(0.08) benign(0.081) TCGA-B0-5696-01 X 48462718 48462718 T C WDR13 Missense_Mutation p.S405P 0.12 tolerated(0.22) benign(0.304) TCGA-B0-5696-01 Y 4966255 4966255 G T PCDH11Y Splice_Site p.X213_splice 0.14 TCGA-B0-5697-01 10 12178106 12178106 C G SEC61A2 Missense_Mutation p.I26M 0.03 deleterious(0) benign(0.435) TCGA-B0-5697-01 10 51582263 51582263 G A NCOA4 Missense_Mutation p.M203I 0.17 tolerated(0.4) benign(0.011) TCGA-B0-5697-01 10 68687373 68687373 C A LRRTM3 Missense_Mutation p.N233K 0.25 tolerated(0.19) benign(0.138) TCGA-B0-5697-01 10 96352150 96352150 A T HELLS Splice_Site p.X618_splice 0.14 TCGA-B0-5697-01 11 18231982 18231982 G A RP11-113D6.10 3'UTR 0.13 TCGA-B0-5697-01 11 57381959 57381959 G T SERPING1 Missense_Mutation p.V470F 0.10 tolerated(0.19) benign(0.057) TCGA-B0-5697-01 11 7723751 7723751 A G OVCH2 Missense_Mutation p.M139T 0.17 deleterious(0) probably_damaging(0.948) TCGA-B0-5697-01 12 66308767 66308767 A G HMGA2 Intron 0.38 TCGA-B0-5697-01 13 20426164 20426164 C A ZMYM5 Missense_Mutation p.D53Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-B0-5697-01 13 39264065 39264065 G A FREM2 Missense_Mutation p.A862T 0.15 tolerated(0.2) benign(0.001) TCGA-B0-5697-01 14 21966604 21966604 T C TOX4 3'UTR 0.22 TCGA-B0-5697-01 14 60587988 60587988 G T PCNXL4 Missense_Mutation p.G439C 0.23 deleterious(0) probably_damaging(1) TCGA-B0-5697-01 14 63473094 63473094 G T KCNH5 Nonsense_Mutation p.Y98* 0.12 TCGA-B0-5697-01 14 73550237 73550237 A G RBM25 Silent p.Q120Q 0.24 TCGA-B0-5697-01 14 74763081 74763081 A G ABCD4 Missense_Mutation p.I166T 0.25 deleterious(0.05) benign(0.093) TCGA-B0-5697-01 15 101606007 101606007 G A LRRK1 Missense_Mutation p.V1789M 0.22 deleterious(0.02) possibly_damaging(0.88) TCGA-B0-5697-01 15 42454241 42454241 C T VPS39 Missense_Mutation p.E817K 0.20 deleterious(0.01) possibly_damaging(0.684) TCGA-B0-5697-01 15 76634124 76634124 C T ISL2 Missense_Mutation p.S343L 0.11 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-B0-5697-01 16 50667285 50667285 C T NKD1 Missense_Mutation p.R336W 0.26 deleterious(0) probably_damaging(0.996) TCGA-B0-5697-01 16 56700810 56700810 T C MT1G Missense_Mutation p.K56R 0.22 tolerated(0.05) unknown(0) TCGA-B0-5697-01 16 629095 629095 T C PIGQ Missense_Mutation p.L417P 0.42 deleterious(0) probably_damaging(0.999) TCGA-B0-5697-01 16 84328487 84328487 C T WFDC1 5'UTR 0.19 TCGA-B0-5697-01 17 34249624 34249624 C T RDM1 Silent p.K208K 0.25 TCGA-B0-5697-01 17 5084426 5084426 C A ZNF594 3'UTR 0.07 TCGA-B0-5697-01 17 7669721 7669721 G A DNAH2 Silent p.E1199E 0.22 TCGA-B0-5697-01 18 15325675 15325675 C A RNU6-721P 5'Flank 0.21 TCGA-B0-5697-01 18 61154179 61154179 G C SERPINB5 Missense_Mutation p.V57L 0.11 deleterious(0.03) benign(0.018) TCGA-B0-5697-01 19 2877877 2877877 A G ZNF556 Silent p.R307R 0.14 TCGA-B0-5697-01 19 52004612 52004612 C T SIGLEC12 Missense_Mutation p.G126R 0.21 deleterious(0.03) probably_damaging(0.991) TCGA-B0-5697-01 19 7810629 7810629 G A CD209 Missense_Mutation p.R175W 0.24 deleterious(0.01) benign(0.097) TCGA-B0-5697-01 1 11217290 11217290 T G MTOR Missense_Mutation p.Y1463S 0.19 deleterious(0) probably_damaging(0.994) TCGA-B0-5697-01 1 207785153 207785153 T A CR1 Missense_Mutation p.C2143S 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-B0-5697-01 1 213341274 213341274 C T RPS6KC1 Silent p.I303I 0.10 TCGA-B0-5697-01 1 241723981 241723981 C G KMO Silent p.P126P 0.20 TCGA-B0-5697-01 1 248616344 248616344 G A OR2T2 Missense_Mutation p.M82I 0.10 tolerated(0.07) benign(0.053) TCGA-B0-5697-01 1 41579130 41579130 G T SCMH1 Missense_Mutation p.N180K 0.23 deleterious(0) probably_damaging(0.999) TCGA-B0-5697-01 1 43812498 43812498 A G MPL Missense_Mutation p.I401V 0.20 tolerated(1) benign(0.001) TCGA-B0-5697-01 1 53608095 53608095 C T SLC1A7 Silent p.R9R 0.23 TCGA-B0-5697-01 20 30432839 30432839 C T FOXS1 Silent p.L169L 0.15 TCGA-B0-5697-01 20 47246011 47246011 A G PREX1 Missense_Mutation p.V1581A 0.09 tolerated(0.67) benign(0.001) TCGA-B0-5697-01 21 33642036 33642036 T C MIS18A Missense_Mutation p.I201M 0.21 tolerated(0.39) benign(0.02) TCGA-B0-5697-01 22 20976999 20976999 C G SMPD4P1 RNA 0.13 TCGA-B0-5697-01 22 21363175 21363175 T A AC002472.1 5'Flank 0.24 TCGA-B0-5697-01 2 11774331 11774331 T C GREB1 Missense_Mutation p.M1689T 0.10 tolerated(1) benign(0) TCGA-B0-5697-01 2 24239113 24239113 A G MFSD2B Missense_Mutation p.R104G 0.11 deleterious(0) possibly_damaging(0.811) TCGA-B0-5697-01 2 25458658 25458658 A - DNMT3A Frame_Shift_Del p.S839Pfs*2 0.25 TCGA-B0-5697-01 2 84756081 84756081 T A DNAH6 Missense_Mutation p.H151Q 0.35 tolerated_low_confidence(0.08) benign(0.001) TCGA-B0-5697-01 3 119361244 119361244 A G POPDC2 3'UTR 0.07 TCGA-B0-5697-01 3 33087643 33087643 T G GLB1 Missense_Mutation p.K346T 0.26 deleterious(0) probably_damaging(1) TCGA-B0-5697-01 4 114275680 114275680 C T ANK2 Missense_Mutation p.T1969I 0.34 benign(0.03) TCGA-B0-5697-01 4 151511868 151511868 C G LRBA Missense_Mutation p.A2075P 0.19 tolerated(0.08) benign(0.177) TCGA-B0-5697-01 4 77941776 77941776 T G SEPT11 Silent p.L302L 0.23 TCGA-B0-5697-01 4 87684097 87684097 T A PTPN13 Silent p.S1257S 0.12 TCGA-B0-5697-01 5 137802682 137802682 G A EGR1 Missense_Mutation p.A182T 0.12 tolerated(0.25) benign(0.078) TCGA-B0-5697-01 5 138269835 138269835 C T CTNNA1 3'UTR 0.14 TCGA-B0-5697-01 5 140085215 140085215 G T ZMAT2 Silent p.A158A 0.15 TCGA-B0-5697-01 5 180377360 180377360 T A BTNL8 Nonsense_Mutation p.L440* 0.40 TCGA-B0-5697-01 6 136597148 136597148 G T BCLAF1 Silent p.L505L 0.04 TCGA-B0-5697-01 6 161781136 161781136 T C PARK2 Silent p.V423V 0.24 TCGA-B0-5697-01 6 27420477 27420477 G A ZNF184 Silent p.F287F 0.22 TCGA-B0-5697-01 6 33284356 33284356 T C ZBTB22 Missense_Mutation p.Y113C 0.12 deleterious(0) probably_damaging(0.999) TCGA-B0-5697-01 6 64421671 64421671 A G PHF3 Missense_Mutation p.N1396S 0.18 tolerated(0.06) benign(0.057) TCGA-B0-5697-01 7 105207775 105207775 G A RINT1 3'UTR 0.16 TCGA-B0-5697-01 7 123335918 123335918 G A WASL Missense_Mutation p.H211Y 0.19 deleterious(0) unknown(0) TCGA-B0-5697-01 7 150739118 150739118 A G ABCB8 Missense_Mutation p.E563G 0.10 deleterious(0) probably_damaging(0.927) TCGA-B0-5697-01 8 110131432 110131432 C T TRHR Silent p.I315I 0.22 TCGA-B0-5697-01 8 110131702 110131702 A G TRHR 3'UTR 0.08 TCGA-B0-5697-01 8 110487349 110487349 A T PKHD1L1 Missense_Mutation p.T2870S 0.17 tolerated(0.37) benign(0.075) TCGA-B0-5697-01 8 120633703 120633703 C A ENPP2 Missense_Mutation p.A117S 0.16 tolerated(0.4) probably_damaging(0.989) TCGA-B0-5697-01 8 124373847 124373848 - GAT ATAD2 In_Frame_Ins p.S366dup 0.16 TCGA-B0-5697-01 8 143746492 143746492 T A JRK RNA 0.15 TCGA-B0-5697-01 8 80677934 80677934 G A HEY1 Missense_Mutation p.A139V 0.25 tolerated(0.23) benign(0.037) TCGA-B0-5697-01 9 104239059 104239059 T C TMEM246 Missense_Mutation p.I106V 0.23 tolerated(0.71) benign(0.032) TCGA-B0-5697-01 9 123912468 123912475 AGTCAGGA - CNTRL Frame_Shift_Del p.S1224Rfs*3 0.12 TCGA-B0-5697-01 9 73027803 73027803 A G KLF9 Silent p.H159H 0.20 TCGA-B0-5697-01 9 91616249 91616249 T C S1PR3 Missense_Mutation p.L45P 0.21 deleterious(0.02) benign(0.333) TCGA-B0-5697-01 X 129518457 129518457 G A GPR119 Missense_Mutation p.S322F 0.48 deleterious(0.02) benign(0.006) TCGA-B0-5697-01 X 53284001 53284001 C T IQSEC2 Missense_Mutation p.R371H 0.63 deleterious(0) probably_damaging(0.979) TCGA-B0-5697-01 X 9714193 9714193 C T GPR143 Silent p.R183R 0.34 TCGA-B0-5698-01 10 14890648 14890648 A C HSPA14 Missense_Mutation p.K88Q 0.34 tolerated(0.21) probably_damaging(0.999) TCGA-B0-5698-01 11 100226891 100226891 C G CNTN5 Silent p.S1081S 0.57 TCGA-B0-5698-01 11 1029578 1029578 G A MUC6 Silent p.C351C 0.49 TCGA-B0-5698-01 11 119059108 119059108 G A PDZD3 Missense_Mutation p.A303T 0.41 deleterious(0) probably_damaging(0.995) TCGA-B0-5698-01 12 102506003 102506011 TCTTCTTCC - NUP37 Splice_Site p.X53_splice 0.23 TCGA-B0-5698-01 12 129558540 129558540 G T TMEM132D Silent p.P1060P 0.32 TCGA-B0-5698-01 12 130935856 130935856 C T RIMBP2 Missense_Mutation p.A113T 0.28 tolerated(0.34) benign(0.028) TCGA-B0-5698-01 12 132511994 132511994 G A EP400 Missense_Mutation p.G1676D 0.27 unknown(0) TCGA-B0-5698-01 12 56745117 56745117 G A STAT2 Silent p.R300R 0.37 TCGA-B0-5698-01 12 57397920 57397923 AGGA - ZBTB39 Frame_Shift_Del p.F260Sfs*7 0.32 TCGA-B0-5698-01 12 78553024 78553024 G A NAV3 Missense_Mutation p.M1609I 0.44 deleterious(0) benign(0.209) TCGA-B0-5698-01 13 101720287 101720287 C A NALCN Missense_Mutation p.V1477L 0.38 deleterious(0.03) possibly_damaging(0.881) TCGA-B0-5698-01 13 41507956 41507956 G A ELF1 Nonsense_Mutation p.Q489* 0.31 TCGA-B0-5698-01 13 86370082 86370082 G T SLITRK6 Missense_Mutation p.L188I 0.40 deleterious(0) probably_damaging(0.999) TCGA-B0-5698-01 14 50736035 50736035 C G L2HGDH Missense_Mutation p.R251P 0.14 tolerated(0.21) possibly_damaging(0.763) TCGA-B0-5698-01 15 52892355 52892355 A G FAM214A Missense_Mutation p.I873T 0.25 tolerated(0.31) benign(0.097) TCGA-B0-5698-01 15 73585755 73585755 A G NEO1 Missense_Mutation p.H1256R 0.35 tolerated(0.28) probably_damaging(0.999) TCGA-B0-5698-01 16 16263538 16263538 C - ABCC6 Frame_Shift_Del p.R987Lfs*25 0.21 TCGA-B0-5698-01 16 28115915 28115915 G T XPO6 Silent p.I966I 0.44 TCGA-B0-5698-01 16 46836753 46836753 C A C16orf87 3'UTR 0.24 TCGA-B0-5698-01 16 47493063 47493063 C A ITFG1 Missense_Mutation p.A78S 0.22 tolerated(0.11) probably_damaging(0.971) TCGA-B0-5698-01 16 71318530 71318530 T C CMTR2 Missense_Mutation p.K432E 0.30 deleterious(0.01) possibly_damaging(0.724) TCGA-B0-5698-01 17 28659092 28659092 T G TMIGD1 Missense_Mutation p.L20F 0.48 tolerated(0.12) benign(0.009) TCGA-B0-5698-01 17 37075097 37075097 G A LASP1 3'UTR 0.14 TCGA-B0-5698-01 17 40647651 40647651 A T ATP6V0A1 Missense_Mutation p.T500S 0.25 tolerated(0.19) benign(0.142) TCGA-B0-5698-01 17 46134732 46134732 A T NFE2L1 Silent p.T280T 0.35 TCGA-B0-5698-01 17 5012545 5012545 A G ZNF232 Intron 0.35 TCGA-B0-5698-01 17 61911351 61911351 G A SMARCD2 Nonsense_Mutation p.R367* 0.05 TCGA-B0-5698-01 17 8216256 8216256 C - ARHGEF15 Frame_Shift_Del p.P207Lfs*129 0.26 TCGA-B0-5698-01 18 64235684 64235684 A T CDH19 Nonsense_Mutation p.Y153* 0.04 TCGA-B0-5698-01 18 77475251 77475251 G C CTDP1 Silent p.L597L 0.40 TCGA-B0-5698-01 19 1433802 1433802 C T DAZAP1 Intron 0.28 TCGA-B0-5698-01 19 16059970 16059970 G A OR10H4 Nonsense_Mutation p.W51* 0.38 TCGA-B0-5698-01 19 17533164 17533164 C T MVB12A Missense_Mutation p.R104C 0.22 deleterious(0) benign(0.056) TCGA-B0-5698-01 19 33490548 33490548 G A RHPN2 Missense_Mutation p.P390L 0.06 deleterious(0) probably_damaging(0.981) TCGA-B0-5698-01 19 41094601 41094601 G A SHKBP1 Missense_Mutation p.G470S 0.27 deleterious(0.02) probably_damaging(0.986) TCGA-B0-5698-01 19 41120306 41120306 G A LTBP4 Silent p.R989R 0.26 TCGA-B0-5698-01 1 10434522 10434522 A C KIF1B Missense_Mutation p.S1653R 0.32 deleterious(0) benign(0.008) TCGA-B0-5698-01 1 11345857 11345858 - C UBIAD1 Frame_Shift_Ins p.H230Pfs*68 0.30 TCGA-B0-5698-01 1 113635893 113635893 T A LRIG2 Missense_Mutation p.L124Q 0.27 tolerated(0.57) benign(0.001) TCGA-B0-5698-01 1 12785830 12785830 G T AADACL3 Missense_Mutation p.G307V 0.28 deleterious(0) probably_damaging(0.993) TCGA-B0-5698-01 1 155716684 155716684 T - GON4L 3'Flank 0.18 TCGA-B0-5698-01 1 198678874 198678874 G C PTPRC Missense_Mutation p.E364D 0.37 tolerated(0.4) benign(0.001) TCGA-B0-5698-01 1 198678876 198678876 A T PTPRC Missense_Mutation p.Y365F 0.36 deleterious(0.02) benign(0.32) TCGA-B0-5698-01 1 223408420 223408420 G A SUSD4 Intron 0.24 TCGA-B0-5698-01 1 38269558 38269558 T G YRDC 3'UTR 0.33 TCGA-B0-5698-01 1 54644949 54644949 T G CYB5RL Missense_Mutation p.N206T 0.54 deleterious(0.01) possibly_damaging(0.641) TCGA-B0-5698-01 1 5934954 5934954 C A NPHP4 Missense_Mutation p.E1008D 0.22 tolerated(0.08) benign(0.06) TCGA-B0-5698-01 1 84670172 84670172 G C PRKACB Intron 0.17 TCGA-B0-5698-01 20 32377331 32377331 A C ZNF341 Missense_Mutation p.T651P 0.32 tolerated(0.06) possibly_damaging(0.844) TCGA-B0-5698-01 20 33530526 33530526 A G GSS Intron 0.47 TCGA-B0-5698-01 21 44840177 44840177 G A SIK1 Silent p.D303D 0.32 TCGA-B0-5698-01 22 19210260 19210260 G C CLTCL1 Missense_Mutation p.L789V 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-B0-5698-01 22 19767018 19767018 G T GNB1L 3'Flank 0.25 TCGA-B0-5698-01 22 28146852 28146852 C G MN1 3'UTR 0.52 TCGA-B0-5698-01 22 50695076 50695076 C T MAPK12 Splice_Site p.X153_splice 0.29 TCGA-B0-5698-01 2 109547486 109547486 C T EDAR Intron 0.38 TCGA-B0-5698-01 2 160042345 160042345 G C TANC1 Missense_Mutation p.G852R 0.32 deleterious(0) possibly_damaging(0.86) TCGA-B0-5698-01 2 162661045 162661046 AG - SLC4A10 Frame_Shift_Del p.R73Kfs*20 0.45 TCGA-B0-5698-01 2 179404241 179404241 G A TTN Nonsense_Mutation p.R32851* 0.28 TCGA-B0-5698-01 2 179476554 179476554 C A TTN Missense_Mutation p.A16828S 0.27 TCGA-B0-5698-01 2 179485685 179485685 G A TTN Missense_Mutation p.R15218W 0.22 TCGA-B0-5698-01 2 198266611 198266611 C T SF3B1 Missense_Mutation p.G742D 0.17 tolerated(0.06) possibly_damaging(0.774) TCGA-B0-5698-01 2 216960807 216960807 A - TMEM169 Frame_Shift_Del p.K42Rfs*43 0.25 TCGA-B0-5698-01 2 90044371 90044371 C A IGKV2D-24 Missense_Mutation p.L98M 0.26 deleterious(0) probably_damaging(0.917) TCGA-B0-5698-01 3 114070318 114070318 C T ZBTB20 Missense_Mutation p.G203R 0.21 tolerated(0.12) benign(0.094) TCGA-B0-5698-01 3 136240212 136240212 T - STAG1 Frame_Shift_Del p.K173Nfs*13 0.34 TCGA-B0-5698-01 3 136729130 136729130 C A IL20RB 3'UTR 0.43 TCGA-B0-5698-01 3 190321925 190321925 G A IL1RAP Missense_Mutation p.D25N 0.26 tolerated(0.18) possibly_damaging(0.741) TCGA-B0-5698-01 3 50294255 50294255 G T GNAI2 Missense_Mutation p.D232Y 0.27 deleterious(0) probably_damaging(0.98) TCGA-B0-5698-01 3 52610584 52610584 C - PBRM1 Frame_Shift_Del p.E1197Kfs*5 0.31 TCGA-B0-5698-01 4 134071550 134071550 C A PCDH10 Nonsense_Mutation p.C85* 0.24 TCGA-B0-5698-01 4 152592258 152592258 C T PET112 3'UTR 0.25 TCGA-B0-5698-01 4 5461876 5461876 T C STK32B Missense_Mutation p.I277T 0.39 deleterious(0) benign(0.16) TCGA-B0-5698-01 5 112888982 112888982 G C YTHDC2 Missense_Mutation p.S598T 0.31 tolerated(0.33) benign(0.061) TCGA-B0-5698-01 5 131296216 131296216 A T ACSL6 Missense_Mutation p.N652K 0.20 deleterious(0.05) benign(0.011) TCGA-B0-5698-01 6 149833352 149833352 G C PPIL4 Missense_Mutation p.T389S 0.34 tolerated(0.67) benign(0.001) TCGA-B0-5698-01 6 28967350 28967350 T - ZNF311 Frame_Shift_Del p.N75Tfs*7 0.31 TCGA-B0-5698-01 6 32117130 32117130 C T PRRT1 Missense_Mutation p.A264T 0.40 deleterious(0.04) possibly_damaging(0.711) TCGA-B0-5698-01 6 42666085 42666085 T C PRPH2 Missense_Mutation p.N330S 0.29 tolerated(0.13) benign(0.02) TCGA-B0-5698-01 6 44107217 44107217 C T TMEM63B Missense_Mutation p.R141W 0.25 tolerated(0.17) possibly_damaging(0.851) TCGA-B0-5698-01 6 4735076 4735076 C G CDYL Missense_Mutation p.Q62E 0.44 tolerated(1) benign(0.003) TCGA-B0-5698-01 6 66063414 66063414 G T EYS Missense_Mutation p.H466N 0.34 tolerated(0.42) possibly_damaging(0.607) TCGA-B0-5698-01 8 22138976 22138976 G C PIWIL2 Missense_Mutation p.V125L 0.35 tolerated_low_confidence(0.33) benign(0.001) TCGA-B0-5698-01 8 68396051 68396051 G T CPA6 Missense_Mutation p.R264S 0.32 tolerated(0.92) benign(0.112) TCGA-B0-5698-01 8 72975792 72975792 A C TRPA1 Silent p.A189A 0.25 TCGA-B0-5698-01 9 138379621 138379621 T G PPP1R26 Missense_Mutation p.F1089V 0.46 deleterious(0) benign(0.031) TCGA-B0-5698-01 9 34490013 34490013 C T DNAI1 Missense_Mutation p.S131F 0.25 tolerated(0.07) benign(0.163) TCGA-B0-5698-01 X 53224222 53224222 G C KDM5C Nonsense_Mutation p.S1110* 0.70 TCGA-B0-5699-01 10 101478246 101478246 C T COX15 Missense_Mutation p.A282T 0.05 deleterious(0.03) possibly_damaging(0.738) TCGA-B0-5699-01 10 111860410 111860410 A G ADD3 5'UTR 0.09 TCGA-B0-5699-01 10 45956930 45956930 G C MARCH8 Intron 0.26 TCGA-B0-5699-01 10 52601746 52601746 T A A1CF Nonsense_Mutation p.K89* 0.30 TCGA-B0-5699-01 10 85982281 85982281 G T LRIT2 Missense_Mutation p.L350I 0.06 tolerated(0.43) benign(0.008) TCGA-B0-5699-01 11 122930929 122930929 A G HSPA8 Silent p.S153S 0.42 TCGA-B0-5699-01 11 19955242 19955242 C A NAV2 Silent p.G507G 0.32 TCGA-B0-5699-01 11 19955243 19955243 A T NAV2 Missense_Mutation p.N508Y 0.32 deleterious(0.03) possibly_damaging(0.474) TCGA-B0-5699-01 12 117728212 117728212 T A NOS1 Missense_Mutation p.Q291L 0.07 tolerated(0.14) benign(0.005) TCGA-B0-5699-01 12 125451754 125451754 C A DHX37 Silent p.L473L 0.12 TCGA-B0-5699-01 12 53579788 53579788 T A ZNF740 Missense_Mutation p.N100K 0.33 tolerated(0.11) benign(0.403) TCGA-B0-5699-01 12 79747321 79747321 G A SYT1 Missense_Mutation p.V284I 0.35 deleterious(0.04) benign(0.32) TCGA-B0-5699-01 12 89993060 89993086 GGAATTGTTGAAATAAGCTACAACACA - ATP2B1 Splice_Site p.X1057_splice 0.15 TCGA-B0-5699-01 13 37679428 37679428 T G CSNK1A1L 5'UTR 0.28 TCGA-B0-5699-01 13 45911319 45911319 A T TPT1 3'UTR 0.64 TCGA-B0-5699-01 13 45911320 45911320 A T TPT1 3'UTR 0.64 TCGA-B0-5699-01 14 24587733 24587733 G C DCAF11 Missense_Mutation p.W238C 0.27 deleterious(0) probably_damaging(1) TCGA-B0-5699-01 14 32563340 32563340 T G ARHGAP5 Nonsense_Mutation p.Y1155* 0.38 TCGA-B0-5699-01 14 50579393 50579393 T C VCPKMT Silent p.K205K 0.31 TCGA-B0-5699-01 15 41571706 41571706 C T CHP1 3'UTR 0.10 TCGA-B0-5699-01 15 78486923 78486923 G A ACSBG1 Silent p.R126R 0.46 TCGA-B0-5699-01 16 29841797 29841798 - C MVP Intron 0.27 TCGA-B0-5699-01 16 30081653 30081653 C T ALDOA 3'UTR 0.62 TCGA-B0-5699-01 17 72769713 72769713 A G NAT9 Splice_Site p.X64_splice 0.35 TCGA-B0-5699-01 18 59854885 59854885 T G KIAA1468 Silent p.P49P 0.35 TCGA-B0-5699-01 19 33110234 33110234 A T ANKRD27 Missense_Mutation p.S647T 0.34 tolerated(0.08) benign(0.153) TCGA-B0-5699-01 19 52249899 52249899 C T FPR1 Missense_Mutation p.A117T 0.23 tolerated(0.54) benign(0.082) TCGA-B0-5699-01 19 54962481 54962491 GTCTGGCTCCC - LENG8 5'UTR 0.22 TCGA-B0-5699-01 19 55873723 55873723 G A FAM71E2 Missense_Mutation p.L152F 0.48 deleterious(0) probably_damaging(1) TCGA-B0-5699-01 19 6828475 6828475 C T VAV1 Missense_Mutation p.R357W 0.30 deleterious(0) probably_damaging(0.999) TCGA-B0-5699-01 19 686939 686939 G A PRSS57 Missense_Mutation p.R211W 0.20 deleterious(0) probably_damaging(0.971) TCGA-B0-5699-01 1 144922040 144922040 T C PDE4DIP Missense_Mutation p.E330G 0.13 deleterious(0) possibly_damaging(0.894) TCGA-B0-5699-01 1 155006934 155006934 G T DCST1 Missense_Mutation p.G29W 0.28 tolerated(0.08) possibly_damaging(0.711) TCGA-B0-5699-01 1 19545706 19545706 C T EMC1 3'UTR 0.10 TCGA-B0-5699-01 1 35250612 35250612 C T GJB3 Silent p.F83F 0.44 TCGA-B0-5699-01 1 40777353 40777353 G A COL9A2 Missense_Mutation p.P151L 0.43 deleterious(0) unknown(0) TCGA-B0-5699-01 20 45702893 45702893 C A EYA2 Missense_Mutation p.P194T 0.36 tolerated(0.18) benign(0.236) TCGA-B0-5699-01 20 47838004 47838004 G C DDX27 Missense_Mutation p.G68R 0.33 tolerated(0.52) benign(0.221) TCGA-B0-5699-01 20 47887950 47887950 C T ZNFX1 Silent p.K133K 0.37 TCGA-B0-5699-01 20 61041502 61041502 G A GATA5 Missense_Mutation p.L269F 0.16 deleterious(0) probably_damaging(1) TCGA-B0-5699-01 21 33032038 33032038 C T SOD1 5'UTR 0.48 TCGA-B0-5699-01 21 33076230 33076230 C G SCAF4 Missense_Mutation p.E57Q 0.37 probably_damaging(0.971) TCGA-B0-5699-01 22 39709724 39709724 A T RPL3 Missense_Mutation p.V321D 0.12 tolerated(0.06) possibly_damaging(0.513) TCGA-B0-5699-01 2 224743372 224743372 C T WDFY1 3'UTR 0.09 TCGA-B0-5699-01 2 62934347 62934347 A G EHBP1 Silent p.R7R 0.30 TCGA-B0-5699-01 3 125854457 125854457 C G ALDH1L1 Missense_Mutation p.V475L 0.35 deleterious(0.01) benign(0.013) TCGA-B0-5699-01 3 126707667 126707667 C T PLXNA1 Silent p.N77N 0.25 TCGA-B0-5699-01 3 47164498 47164498 G T SETD2 Nonsense_Mutation p.S543* 0.53 TCGA-B0-5699-01 3 52649451 52649451 G C PBRM1 Missense_Mutation p.L614V 0.53 deleterious(0) benign(0.003) TCGA-B0-5699-01 4 2948137 2948137 A G NOP14 Splice_Site p.X545_splice 0.38 TCGA-B0-5699-01 4 6623175 6623175 T A MAN2B2 3'UTR 0.50 TCGA-B0-5699-01 4 70078407 70078407 T C UGT2B11 Missense_Mutation p.K252E 0.32 deleterious(0) probably_damaging(0.999) TCGA-B0-5699-01 4 70346629 70346629 C G UGT2B4 Splice_Site p.X437_splice 0.19 TCGA-B0-5699-01 5 140769724 140769724 G C PCDHGB4 Missense_Mutation p.G758A 0.39 tolerated(0.73) benign(0.023) TCGA-B0-5699-01 5 156589916 156589916 G A FAM71B Missense_Mutation p.R454C 0.28 deleterious(0) possibly_damaging(0.543) TCGA-B0-5699-01 5 23522473 23522473 C A PRDM9 Missense_Mutation p.A190E 0.25 tolerated(0.08) possibly_damaging(0.848) TCGA-B0-5699-01 6 150094281 150094281 A G PCMT1 Silent p.Q114Q 0.33 TCGA-B0-5699-01 6 33408548 33408548 G A SYNGAP1 Silent p.R573R 0.60 TCGA-B0-5699-01 6 34214269 34214269 G C C6orf1 3'UTR 0.38 TCGA-B0-5699-01 6 35922941 35922941 G A SLC26A8 Silent p.V740V 0.45 TCGA-B0-5699-01 7 139225199 139225199 C A CLEC2L Missense_Mutation p.A133E 0.38 deleterious(0) probably_damaging(0.995) TCGA-B0-5699-01 7 87214930 87214930 C T ABCB1 Missense_Mutation p.G62R 0.27 deleterious(0) probably_damaging(1) TCGA-B0-5699-01 7 87483612 87483612 T C SLC25A40 Silent p.V57V 0.35 TCGA-B0-5699-01 8 27296898 27296898 G A PTK2B Missense_Mutation p.S606N 0.29 deleterious(0) probably_damaging(0.998) TCGA-B0-5699-01 8 30538473 30538473 T C GSR Missense_Mutation p.K456R 0.36 tolerated(0.18) benign(0.003) TCGA-B0-5699-01 X 1505637 1505637 G A SLC25A6 Missense_Mutation p.T252M 0.35 deleterious(0.05) benign(0.065) TCGA-B0-5700-01 10 112839134 112839134 C G ADRA2A Missense_Mutation p.D460E 0.29 tolerated(0.5) benign(0.001) TCGA-B0-5700-01 10 13214706 13214706 A T MCM10 Missense_Mutation p.D179V 0.24 deleterious(0.03) benign(0.382) TCGA-B0-5700-01 10 17199699 17199699 C T TRDMT1 Missense_Mutation p.V210I 0.04 tolerated(0.6) benign(0.001) TCGA-B0-5700-01 10 61835096 61835096 G A ANK3 Missense_Mutation p.S1848L 0.26 benign(0.023) TCGA-B0-5700-01 10 99498433 99498433 T C ZFYVE27 Splice_Site p.X66_splice 0.28 TCGA-B0-5700-01 10 99969109 99969110 - A R3HCC1L Frame_Shift_Ins p.F415Vfs*15 0.24 TCGA-B0-5700-01 11 107309907 107309907 G C CWF19L2 Silent p.S191S 0.25 TCGA-B0-5700-01 11 111368762 111368772 TCCTTCGGAAG - BTG4 Frame_Shift_Del p.L88Dfs*9 0.24 TCGA-B0-5700-01 11 124180246 124180246 C A OR8D1 Missense_Mutation p.W139C 0.34 deleterious(0.01) benign(0.161) TCGA-B0-5700-01 11 19204061 19204061 T C CSRP3 3'UTR 0.08 TCGA-B0-5700-01 11 72554061 72554061 C TG FCHSD2 Intron 0.29 TCGA-B0-5700-01 12 122296740 122296740 A T HPD 5'UTR 0.31 TCGA-B0-5700-01 12 123064489 123064489 T C KNTC1 Missense_Mutation p.V960A 0.23 tolerated(0.1) benign(0.003) TCGA-B0-5700-01 12 3120230 3120230 A T TEAD4 Missense_Mutation p.K96M 0.38 deleterious(0) probably_damaging(0.988) TCGA-B0-5700-01 12 52863556 52863561 AGGTCC T KRT6C Frame_Shift_Del p.D440Gfs*163 0.27 TCGA-B0-5700-01 12 6440019 6440019 C A TNFRSF1A Missense_Mutation p.G209C 0.38 deleterious(0) probably_damaging(0.997) TCGA-B0-5700-01 13 28636106 28636106 A C FLT3 Missense_Mutation p.I89S 0.09 deleterious(0) benign(0.068) TCGA-B0-5700-01 14 50713970 50713970 C T L2HGDH Missense_Mutation p.G400S 0.27 deleterious(0.05) probably_damaging(1) TCGA-B0-5700-01 14 50713972 50713972 C T L2HGDH Splice_Site p.X399_splice 0.27 TCGA-B0-5700-01 14 61995857 61995857 A T RP11-47I22.4 Missense_Mutation p.M5L 0.32 tolerated(0.17) benign(0.003) TCGA-B0-5700-01 15 56122778 56122778 T A NEDD4 Missense_Mutation p.N1192I 0.31 deleterious(0) possibly_damaging(0.893) TCGA-B0-5700-01 15 63881212 63881212 T A USP3 Splice_Site p.X466_splice 0.24 TCGA-B0-5700-01 16 19051664 19051664 T G TMC7 Silent p.S411S 0.30 TCGA-B0-5700-01 16 74425380 74425380 G A NPIPB15 Missense_Mutation p.R245H 0.20 tolerated_low_confidence(1) benign(0.006) TCGA-B0-5700-01 16 90106799 90106799 A - GAS8 Frame_Shift_Del p.E368Dfs*7 0.23 TCGA-B0-5700-01 17 18150622 18150622 T G FLII Missense_Mutation p.Y846S 0.39 deleterious(0) probably_damaging(0.976) TCGA-B0-5700-01 17 39994118 39994118 A T KLHL10 5'UTR 0.33 TCGA-B0-5700-01 17 5322730 5322730 C G NUP88 Missense_Mutation p.V81L 0.26 tolerated(0.56) benign(0.014) TCGA-B0-5700-01 18 30092276 30092276 T G WBP11P1 RNA 0.33 TCGA-B0-5700-01 18 7888280 7888280 C A PTPRM Missense_Mutation p.L125M 0.29 tolerated(0.12) benign(0.02) TCGA-B0-5700-01 19 1083249 1083249 C G HMHA1 Missense_Mutation p.S967C 0.29 deleterious(0) possibly_damaging(0.784) TCGA-B0-5700-01 19 12058348 12058348 G A ZNF700 Silent p.Q70Q 0.27 TCGA-B0-5700-01 19 17664408 17664408 C G FAM129C 3'UTR 0.36 TCGA-B0-5700-01 19 33350846 33350846 G T SLC7A9 Silent p.I258I 0.33 TCGA-B0-5700-01 19 39905708 39905708 G C PLEKHG2 Silent p.G62G 0.40 TCGA-B0-5700-01 19 53208188 53208188 T C ZNF611 3'UTR 0.30 TCGA-B0-5700-01 19 9763737 9763737 T G ZNF562 Missense_Mutation p.H390P 0.35 deleterious(0) probably_damaging(1) TCGA-B0-5700-01 1 108679216 108679216 A G SLC25A24 3'UTR 0.27 TCGA-B0-5700-01 1 115161012 115161012 G T DENND2C Missense_Mutation p.T440K 0.24 deleterious(0.05) benign(0.06) TCGA-B0-5700-01 1 1310113 1310113 G A AURKAIP1 Silent p.S8S 0.21 TCGA-B0-5700-01 1 156883013 156883013 A G PEAR1 Missense_Mutation p.Y817C 0.27 deleterious(0) probably_damaging(0.999) TCGA-B0-5700-01 1 168044674 168044675 - A DCAF6 3'UTR 0.23 TCGA-B0-5700-01 1 231829917 231829917 C T DISC1 Missense_Mutation p.P138L 0.37 deleterious(0.04) possibly_damaging(0.833) TCGA-B0-5700-01 1 39812679 39812687 GCTCAGCTG - MACF1 Intron 0.16 TCGA-B0-5700-01 1 85136494 85136494 G C SSX2IP Missense_Mutation p.S16R 0.25 tolerated(0.19) benign(0.004) TCGA-B0-5700-01 20 57019331 57019338 CACCATAT - VAPB 3'UTR 0.25 TCGA-B0-5700-01 21 45560224 45560224 G C C21orf33 Missense_Mutation p.G174A 0.41 tolerated(0.05) probably_damaging(0.998) TCGA-B0-5700-01 2 116525981 116525981 G A DPP10 Splice_Site p.X411_splice 0.07 TCGA-B0-5700-01 2 143676198 143676198 A G KYNU Missense_Mutation p.K64E 0.35 tolerated(1) benign(0) TCGA-B0-5700-01 2 179312283 179312283 T A PRKRA Missense_Mutation p.H89L 0.30 deleterious(0.01) possibly_damaging(0.649) TCGA-B0-5700-01 2 32734922 32734922 G T BIRC6 Missense_Mutation p.L3366F 0.31 possibly_damaging(0.759) TCGA-B0-5700-01 2 69472360 69472360 C T ANTXR1 Missense_Mutation p.R480C 0.29 deleterious(0.01) probably_damaging(0.977) TCGA-B0-5700-01 2 71660313 71660313 C G ZNF638 Missense_Mutation p.P1924R 0.30 deleterious(0) probably_damaging(0.999) TCGA-B0-5700-01 2 96942954 96942954 A G SNRNP200 Missense_Mutation p.M1986T 0.33 deleterious(0.03) benign(0.102) TCGA-B0-5700-01 3 128339150 128339150 G A RPN1 3'UTR 0.42 TCGA-B0-5700-01 3 45988981 45988981 C A CXCR6 Silent p.A336A 0.41 TCGA-B0-5700-01 3 52643768 52643768 G A PBRM1 Nonsense_Mutation p.R710* 0.43 TCGA-B0-5700-01 3 62189333 62189333 G A PTPRG Missense_Mutation p.E622K 0.47 tolerated(0.65) benign(0.001) TCGA-B0-5700-01 3 9862412 9862412 T C TTLL3 Missense_Mutation p.Y381H 0.10 deleterious(0) probably_damaging(0.999) TCGA-B0-5700-01 4 170641375 170641375 G A CLCN3 3'UTR 0.36 TCGA-B0-5700-01 4 187542080 187542080 G T FAT1 Missense_Mutation p.S1887Y 0.27 benign(0.397) TCGA-B0-5700-01 4 68501233 68501233 T C UBA6 Missense_Mutation p.M594V 0.19 deleterious(0.01) possibly_damaging(0.758) TCGA-B0-5700-01 4 79367993 79367993 A G FRAS1 Missense_Mutation p.D1990G 0.35 benign(0.14) TCGA-B0-5700-01 4 90035837 90035837 A C TIGD2 3'UTR 0.30 TCGA-B0-5700-01 5 106717043 106717043 G A EFNA5 Silent p.R200R 0.26 TCGA-B0-5700-01 5 126792915 126792915 C A MEGF10 Missense_Mutation p.H1110N 0.23 deleterious(0) probably_damaging(0.98) TCGA-B0-5700-01 5 134305653 134305653 A - CATSPER3 Frame_Shift_Del p.F42Lfs*2 0.16 TCGA-B0-5700-01 5 140554844 140554844 A C PCDHB7 3'UTR 0.11 TCGA-B0-5700-01 5 149439337 149439337 G A CSF1R Silent p.S686S 0.26 TCGA-B0-5700-01 5 16673904 16673904 A T MYO10 Missense_Mutation p.S1687T 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-B0-5700-01 5 33561227 33561228 TC - ADAMTS12 Frame_Shift_Del p.Q1343Hfs*4 0.34 TCGA-B0-5700-01 5 43547861 43547861 A C PAIP1 Missense_Mutation p.L197W 0.23 deleterious(0) probably_damaging(1) TCGA-B0-5700-01 6 109802635 109802636 - A ZBTB24 Frame_Shift_Ins p.V199Cfs*3 0.19 TCGA-B0-5700-01 6 117663698 117663698 C T ROS1 Missense_Mutation p.D1512N 0.29 tolerated(0.09) benign(0.027) TCGA-B0-5700-01 6 7211927 7211927 C A RREB1 Nonsense_Mutation p.S231* 0.27 TCGA-B0-5700-01 7 102760420 102760422 AGG - NAPEPLD In_Frame_Del p.L182del 0.29 TCGA-B0-5700-01 7 129843877 129843877 C A TMEM209 Missense_Mutation p.R26M 0.05 tolerated(0.11) probably_damaging(0.94) TCGA-B0-5700-01 7 149505615 149505615 C A SSPO RNA 0.26 TCGA-B0-5700-01 7 64169218 64169218 A - ZNF107 3'UTR 0.19 TCGA-B0-5700-01 7 94292902 94292902 G - PEG10 Frame_Shift_Del p.E12Rfs*5 0.13 TCGA-B0-5700-01 8 10558042 10558042 C T C8orf74 3'UTR 0.27 TCGA-B0-5700-01 8 116635904 116635904 G A TRPS1 5'UTR 0.31 TCGA-B0-5700-01 8 38110313 38110313 A C DDHD2 Missense_Mutation p.H564P 0.24 deleterious(0) probably_damaging(1) TCGA-B0-5700-01 9 125617655 125617655 T G RC3H2 Missense_Mutation p.K875Q 0.32 deleterious(0.02) probably_damaging(0.977) TCGA-B0-5700-01 9 127996161 127996161 G A RABEPK Missense_Mutation p.E341K 0.30 tolerated(0.12) benign(0.005) TCGA-B0-5700-01 9 127996162 127996162 A G RABEPK Missense_Mutation p.E341G 0.30 tolerated(0.16) benign(0.005) TCGA-B0-5700-01 9 136132922 136132923 CC A RP11-430N14.4 5'Flank 0.21 TCGA-B0-5700-01 9 21367616 21367616 C G IFNA13 Missense_Mutation p.E132Q 0.33 deleterious(0.05) benign(0.081) TCGA-B0-5700-01 9 95411805 95411805 A G IPPK Missense_Mutation p.L115P 0.30 deleterious(0) probably_damaging(0.999) TCGA-B0-5700-01 X 9709417 9709417 T C GPR143 Silent p.K282K 0.06 TCGA-B0-5701-01 10 103901173 103901173 G A PPRC1 Missense_Mutation p.V970I 0.28 tolerated_low_confidence(0.05) benign(0.194) TCGA-B0-5701-01 10 134896159 134896159 C A GPR123-AS1 3'Flank 0.23 TCGA-B0-5701-01 10 29815982 29815982 T G SVIL Missense_Mutation p.E750D 0.28 tolerated(0.35) benign(0.012) TCGA-B0-5701-01 10 323257 323257 A G DIP2C 3'UTR 0.29 TCGA-B0-5701-01 10 5498060 5498060 T C NET1 Missense_Mutation p.I403T 0.27 deleterious(0) possibly_damaging(0.472) TCGA-B0-5701-01 10 98743198 98743198 T G C10orf12 Missense_Mutation p.V684G 0.38 tolerated(0.22) benign(0.005) TCGA-B0-5701-01 11 103058111 103058111 A T DYNC2H1 Missense_Mutation p.Q2312H 0.26 benign(0.009) TCGA-B0-5701-01 11 117244472 117244472 G A CEP164 Silent p.L386L 0.27 TCGA-B0-5701-01 11 118071315 118071315 G A AMICA1 Missense_Mutation p.P262L 0.23 deleterious(0.01) benign(0.24) TCGA-B0-5701-01 11 120989265 120989265 G A TECTA Silent p.L347L 0.27 TCGA-B0-5701-01 11 123909163 123909163 G C OR10G7 Silent p.P182P 0.24 TCGA-B0-5701-01 11 1651231 1651231 G T KRTAP5-5 Missense_Mutation p.G54V 0.35 unknown(0) TCGA-B0-5701-01 11 314039 314039 T C IFITM1 5'UTR 0.23 TCGA-B0-5701-01 11 32637578 32637578 T A CCDC73 Missense_Mutation p.E428V 0.28 tolerated(0.28) possibly_damaging(0.65) TCGA-B0-5701-01 11 56380039 56380039 C A OR5M1 Missense_Mutation p.A314S 0.29 tolerated_low_confidence(0.27) benign(0.053) TCGA-B0-5701-01 11 6220794 6220794 C A OR52W1 Missense_Mutation p.A114D 0.27 deleterious(0.02) possibly_damaging(0.905) TCGA-B0-5701-01 11 6220795 6220795 C A OR52W1 Silent p.A114A 0.26 TCGA-B0-5701-01 12 112586091 112586091 G A TRAFD1 Missense_Mutation p.V381M 0.30 deleterious(0.03) probably_damaging(1) TCGA-B0-5701-01 12 113357245 113357246 AA - OAS1 Intron 0.17 TCGA-B0-5701-01 12 122247839 122247839 G A SETD1B Missense_Mutation p.V330I 0.27 possibly_damaging(0.901) TCGA-B0-5701-01 12 48376305 48376305 C T COL2A1 Missense_Mutation p.A761T 0.30 benign(0.058) TCGA-B0-5701-01 12 49422725 49422725 T A KMT2D Missense_Mutation p.K4756N 0.41 unknown(0) TCGA-B0-5701-01 12 53877445 53877445 A G MAP3K12 Missense_Mutation p.M474T 0.26 deleterious(0.05) benign(0.113) TCGA-B0-5701-01 12 55026135 55026135 G A LACRT Missense_Mutation p.A48V 0.29 tolerated_low_confidence(0.28) possibly_damaging(0.682) TCGA-B0-5701-01 12 56567525 56567525 A G SMARCC2 Silent p.A535A 0.23 TCGA-B0-5701-01 14 31416465 31416465 G T STRN3 Missense_Mutation p.L183I 0.36 deleterious(0) possibly_damaging(0.722) TCGA-B0-5701-01 14 89168917 89168920 TACA GTGC EML5 Missense_Mutation p.VY703GT 0.30 TCGA-B0-5701-01 15 40824381 40824381 A G RNU6-516P 3'Flank 0.29 TCGA-B0-5701-01 15 45453967 45453967 G A DUOX1 Silent p.Q1296Q 0.17 TCGA-B0-5701-01 15 45453969 45453969 G C DUOX1 Missense_Mutation p.G1297A 0.14 tolerated(0.1) benign(0.196) TCGA-B0-5701-01 16 51174807 51174807 G C SALL1 Silent p.S442S 0.28 TCGA-B0-5701-01 16 65038638 65038638 C T CDH11 Silent p.G45G 0.21 TCGA-B0-5701-01 16 77775769 77775769 A C NUDT7 Missense_Mutation p.Q213H 0.21 deleterious(0.04) benign(0.004) TCGA-B0-5701-01 17 30694855 30694855 C A ZNF207 Missense_Mutation p.T329K 0.26 tolerated(0.1) probably_damaging(0.978) TCGA-B0-5701-01 17 36483373 36483385 TTCTTTCAGTCAC - GPR179 Frame_Shift_Del p.V2023Sfs*85 0.24 TCGA-B0-5701-01 17 42477558 42477558 T A GPATCH8 Missense_Mutation p.R629S 0.28 tolerated_low_confidence(0.15) possibly_damaging(0.724) TCGA-B0-5701-01 17 5264813 5264813 C T RABEP1 Missense_Mutation p.T469I 0.28 deleterious(0) probably_damaging(1) TCGA-B0-5701-01 17 57079057 57079057 T G TRIM37 Missense_Mutation p.D905A 0.24 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-B0-5701-01 17 61886961 61886961 T C DDX42 Silent p.L398L 0.29 TCGA-B0-5701-01 17 62291574 62291574 T A TEX2 Missense_Mutation p.T2S 0.28 tolerated_low_confidence(0.05) probably_damaging(0.994) TCGA-B0-5701-01 17 65955704 65955704 G A BPTF Missense_Mutation p.M2658I 0.38 benign(0.009) TCGA-B0-5701-01 17 65955705 65955705 C G BPTF Missense_Mutation p.Q2659E 0.37 possibly_damaging(0.878) TCGA-B0-5701-01 17 66042696 66042696 G T KPNA2 Missense_Mutation p.G525V 0.25 tolerated(0.09) benign(0.027) TCGA-B0-5701-01 17 7663182 7663183 TC - DNAH2 Frame_Shift_Del p.S905Cfs*7 0.30 TCGA-B0-5701-01 18 13885108 13885108 C T MC2R Missense_Mutation p.R137Q 0.25 tolerated(0.18) benign(0) TCGA-B0-5701-01 18 28648279 28648279 T G DSC2 Intron 0.26 TCGA-B0-5701-01 18 29435680 29435680 A C TRAPPC8 Missense_Mutation p.N1093K 0.27 tolerated(0.73) benign(0.001) TCGA-B0-5701-01 18 77659531 77659531 C T KCNG2 Silent p.Y372Y 0.40 TCGA-B0-5701-01 19 19609406 19609406 T C GATAD2A Missense_Mutation p.L360P 0.19 deleterious(0) probably_damaging(0.996) TCGA-B0-5701-01 19 20229513 20229513 C G ZNF90 Missense_Mutation p.L384V 0.21 deleterious(0) possibly_damaging(0.466) TCGA-B0-5701-01 19 21608478 21608478 G A ZNF493 3'UTR 0.33 TCGA-B0-5701-01 19 36211567 36211567 C G KMT2B Missense_Mutation p.P440A 0.24 unknown(0) TCGA-B0-5701-01 19 39233680 39233680 C T CAPN12 Silent p.G100G 0.36 TCGA-B0-5701-01 19 39321980 39321980 T C ECH1 Missense_Mutation p.K77E 0.27 deleterious(0) possibly_damaging(0.714) TCGA-B0-5701-01 19 41132926 41132926 C - LTBP4 Frame_Shift_Del p.P1412Rfs*16 0.22 TCGA-B0-5701-01 19 41132932 41132932 G T LTBP4 Silent p.P1412P 0.22 TCGA-B0-5701-01 19 4817479 4817479 C G TICAM1 Missense_Mutation p.C304S 0.30 tolerated(0.14) possibly_damaging(0.539) TCGA-B0-5701-01 19 55485895 55485895 G T NLRP2 Missense_Mutation p.R103M 0.27 tolerated(0.12) benign(0.436) TCGA-B0-5701-01 19 58490239 58490239 T - ZNF606 Frame_Shift_Del p.A604Hfs*13 0.19 TCGA-B0-5701-01 19 58928399 58928399 T G ZNF584 Missense_Mutation p.F172V 0.28 tolerated(0.09) probably_damaging(0.979) TCGA-B0-5701-01 19 6467832 6467832 C T DENND1C Missense_Mutation p.E697K 0.27 tolerated_low_confidence(0.07) benign(0.007) TCGA-B0-5701-01 1 100572485 100572485 A T SASS6 Missense_Mutation p.L464Q 0.27 deleterious(0) probably_damaging(0.971) TCGA-B0-5701-01 1 101004674 101004674 T C GPR88 Missense_Mutation p.M51T 0.09 deleterious(0) benign(0.276) TCGA-B0-5701-01 1 11217299 11217299 A G MTOR Missense_Mutation p.L1460P 0.38 deleterious(0) probably_damaging(0.936) TCGA-B0-5701-01 1 120480035 120480035 T - NOTCH2 Frame_Shift_Del p.N1131Tfs*76 0.17 TCGA-B0-5701-01 1 144923791 144923791 T G PDE4DIP Missense_Mutation p.K223Q 0.13 tolerated(0.45) possibly_damaging(0.462) TCGA-B0-5701-01 1 19180859 19180859 C T TAS1R2 Missense_Mutation p.A369T 0.35 tolerated(0.8) benign(0.021) TCGA-B0-5701-01 1 201772833 201772833 A G NAV1 Silent p.K1210K 0.42 TCGA-B0-5701-01 1 224553605 224553605 C T CNIH4 Missense_Mutation p.H55Y 0.06 deleterious(0.01) possibly_damaging(0.832) TCGA-B0-5701-01 1 246707837 246707837 T C TFB2M Silent p.V335V 0.20 TCGA-B0-5701-01 1 35484838 35484838 A C ZMYM6 Intron 0.28 TCGA-B0-5701-01 1 36411321 36411321 G A AGO3 Missense_Mutation p.M16I 0.33 tolerated(0.23) benign(0) TCGA-B0-5701-01 1 45288276 45288276 A T PTCH2 Silent p.L1141L 0.35 TCGA-B0-5701-01 1 45341321 45341331 TGGACTGGTGG - EIF2B3 Frame_Shift_Del p.P338Ffs*14 0.16 TCGA-B0-5701-01 1 46714224 46714224 C A RAD54L Missense_Mutation p.P15H 0.28 tolerated_low_confidence(0.17) benign(0.001) TCGA-B0-5701-01 20 26063686 26063686 C G FAM182A RNA 0.16 TCGA-B0-5701-01 20 29891177 29891177 G T DEFB116 Missense_Mutation p.N49K 0.28 tolerated(0.16) possibly_damaging(0.82) TCGA-B0-5701-01 20 31015950 31015950 C G ASXL1 Missense_Mutation p.S91C 0.40 deleterious(0) possibly_damaging(0.907) TCGA-B0-5701-01 20 43929999 43929999 A G MATN4 Missense_Mutation p.V243A 0.05 benign(0.001) TCGA-B0-5701-01 20 45607188 45607188 G C EYA2 Intron 0.26 TCGA-B0-5701-01 21 35514723 35514723 T - MRPS6 Frame_Shift_Del p.Y69Mfs*18 0.22 TCGA-B0-5701-01 21 47545941 47545941 C T COL6A2 Missense_Mutation p.R738W 0.18 deleterious(0) probably_damaging(0.999) TCGA-B0-5701-01 22 26859937 26859937 C G HPS4 Silent p.L553L 0.33 TCGA-B0-5701-01 22 50956419 50956419 C T NCAPH2 Silent p.P146P 0.40 TCGA-B0-5701-01 2 128238565 128238565 A G IWS1 3'UTR 0.28 TCGA-B0-5701-01 2 152476170 152476170 T C NEB Missense_Mutation p.Q3556R 0.28 possibly_damaging(0.627) TCGA-B0-5701-01 2 158115559 158115559 T C GALNT5 Missense_Mutation p.L322P 0.06 tolerated(0.1) benign(0) TCGA-B0-5701-01 2 179435409 179435409 C T TTN Silent p.Q25150Q 0.27 TCGA-B0-5701-01 2 190532496 190532496 C G ASNSD1 Missense_Mutation p.L491V 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-B0-5701-01 2 190925098 190925098 A G MSTN Missense_Mutation p.I146T 0.05 tolerated(0.08) benign(0.026) TCGA-B0-5701-01 2 242606247 242606247 G T ATG4B Silent p.T242T 0.35 TCGA-B0-5701-01 2 44176772 44176772 T A LRPPRC Silent p.G568G 0.25 TCGA-B0-5701-01 2 8890360 8890360 G T KIDINS220 Missense_Mutation p.P1099Q 0.11 tolerated(0.28) benign(0.048) TCGA-B0-5701-01 3 107463494 107463494 C T BBX Silent p.C229C 0.24 TCGA-B0-5701-01 3 125702160 125702160 G A ROPN1B Silent p.E212E 0.20 TCGA-B0-5701-01 3 130463550 130463550 C A PIK3R4 Missense_Mutation p.K171N 0.29 deleterious(0) possibly_damaging(0.907) TCGA-B0-5701-01 3 145914562 145914562 G C PLSCR4 Missense_Mutation p.P215A 0.27 deleterious(0) probably_damaging(0.982) TCGA-B0-5701-01 3 155212209 155212209 G A PLCH1 Silent p.L652L 0.27 TCGA-B0-5701-01 3 46939429 46939429 A G PTH1R Missense_Mutation p.D133G 0.46 tolerated(0.06) possibly_damaging(0.689) TCGA-B0-5701-01 3 52233311 52233311 T G ALAS1 Missense_Mutation p.F18L 0.22 tolerated(0.12) possibly_damaging(0.868) TCGA-B0-5701-01 3 96533798 96533798 T A EPHA6 Missense_Mutation p.L111M 0.32 deleterious(0.02) benign(0.105) TCGA-B0-5701-01 3 98299342 98299342 T A CPOX 3'UTR 0.53 TCGA-B0-5701-01 4 3318132 3318132 G T RGS12 Missense_Mutation p.D79Y 0.23 deleterious(0) probably_damaging(1) TCGA-B0-5701-01 4 36161108 36161108 A G ARAP2 Missense_Mutation p.V821A 0.25 tolerated(0.28) benign(0.017) TCGA-B0-5701-01 4 76898846 76898846 C - SDAD1 Frame_Shift_Del p.E120Nfs*23 0.19 TCGA-B0-5701-01 4 84231973 84231973 T A HPSE Missense_Mutation p.Q248H 0.27 tolerated(0.62) benign(0.004) TCGA-B0-5701-01 4 88904007 88904007 A G SPP1 Missense_Mutation p.I302V 0.28 tolerated(1) benign(0.391) TCGA-B0-5701-01 5 118969970 118969970 T C FAM170A Missense_Mutation p.V176A 0.24 tolerated(0.06) benign(0.135) TCGA-B0-5701-01 5 138163310 138163310 C T CTNNA1 Missense_Mutation p.S322L 0.20 deleterious(0) possibly_damaging(0.833) TCGA-B0-5701-01 5 140580390 140580391 - T PCDHB11 Frame_Shift_Ins p.V349Cfs*21 0.16 TCGA-B0-5701-01 5 180036981 180036981 G A FLT4 Missense_Mutation p.A1244V 0.22 tolerated(0.27) benign(0) TCGA-B0-5701-01 6 105526668 105526668 T G LIN28B 3'UTR 0.30 TCGA-B0-5701-01 6 152665354 152665354 C A SYNE1 Missense_Mutation p.Q4029H 0.21 benign(0.008) TCGA-B0-5701-01 6 3225818 3225818 C T TUBB2B Missense_Mutation p.V169I 0.23 tolerated_low_confidence(0.19) benign(0.035) TCGA-B0-5701-01 6 37623473 37623473 G C MDGA1 Intron 0.17 TCGA-B0-5701-01 6 38891033 38891033 T C DNAH8 Intron 0.32 TCGA-B0-5701-01 6 42025358 42025358 G T TAF8 Intron 0.25 TCGA-B0-5701-01 6 43272209 43272209 T C SLC22A7 Intron 0.44 TCGA-B0-5701-01 6 99912577 99912577 A - USP45 Frame_Shift_Del p.L404Yfs*15 0.19 TCGA-B0-5701-01 7 105254533 105254533 G T ATXN7L1 Missense_Mutation p.L750I 0.23 deleterious(0.04) benign(0.355) TCGA-B0-5701-01 7 99045873 99045873 A T CPSF4 Missense_Mutation p.E95V 0.15 tolerated(0.06) possibly_damaging(0.677) TCGA-B0-5701-01 7 99997510 99997510 T A PILRA Missense_Mutation p.Y298N 0.22 deleterious(0) probably_damaging(0.99) TCGA-B0-5701-01 8 113237062 113237062 A G CSMD3 Missense_Mutation p.S3688P 0.29 tolerated(1) possibly_damaging(0.656) TCGA-B0-5701-01 8 145113732 145113732 C G OPLAH Missense_Mutation p.E177D 0.21 tolerated(0.14) benign(0.009) TCGA-B0-5701-01 8 28625658 28625658 C G INTS9 3'UTR 0.16 TCGA-B0-5701-01 8 37704604 37704605 - AT BRF2 Frame_Shift_Ins p.R102Ifs*23 0.29 TCGA-B0-5701-01 8 6302811 6302811 A G MCPH1 Missense_Mutation p.N523S 0.31 tolerated(1) benign(0.059) TCGA-B0-5701-01 8 70981476 70981476 T C PRDM14 Missense_Mutation p.Y207C 0.22 tolerated(0.11) possibly_damaging(0.819) TCGA-B0-5701-01 8 92008894 92008894 T - TMEM55A Frame_Shift_Del p.V207Lfs*3 0.19 TCGA-B0-5701-01 9 100331319 100331319 G T TMOD1 Missense_Mutation p.Q290H 0.37 deleterious(0) probably_damaging(0.998) TCGA-B0-5701-01 9 107331603 107331603 A G OR13C8 Missense_Mutation p.D52G 0.43 deleterious(0.02) possibly_damaging(0.479) TCGA-B0-5701-01 9 139973455 139973455 T C UAP1L1 Missense_Mutation p.L233P 0.31 deleterious(0) possibly_damaging(0.86) TCGA-B0-5701-01 X 111003304 111003304 G A ALG13 3'UTR 0.14 TCGA-B0-5701-01 X 117752678 117752678 G T DOCK11 Missense_Mutation p.R1153I 0.52 deleterious(0) possibly_damaging(0.854) TCGA-B0-5701-01 X 129147823 129147823 A C BCORL1 Missense_Mutation p.T359P 0.61 unknown(0) TCGA-B0-5702-01 10 29079435 29079435 G T LINC00837 RNA 0.08 TCGA-B0-5702-01 11 4133183 4133183 G A RRM1 Missense_Mutation p.E181K 0.13 tolerated_low_confidence(0.09) benign(0.007) TCGA-B0-5702-01 11 4616186 4616186 G C OR52I1 Missense_Mutation p.E306D 0.12 tolerated(0.45) benign(0.003) TCGA-B0-5702-01 11 6290923 6290923 C T CCKBR Missense_Mutation p.T59I 0.10 tolerated(0.33) benign(0.014) TCGA-B0-5702-01 12 14577910 14577910 C T ATF7IP Missense_Mutation p.T354I 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.702) TCGA-B0-5702-01 12 52629134 52629134 G T KRT7 Nonsense_Mutation p.E174* 0.12 TCGA-B0-5702-01 12 52865858 52865858 G T KRT6C Silent p.L249L 0.05 TCGA-B0-5702-01 12 6443404 6443404 G A TNFRSF1A Silent p.L16L 0.05 TCGA-B0-5702-01 12 68720392 68720392 G A MDM1 Intron 0.09 TCGA-B0-5702-01 12 76740157 76740157 A G BBS10 Silent p.Y536Y 0.09 TCGA-B0-5702-01 12 93202807 93202807 T A EEA1 Missense_Mutation p.E775D 0.12 tolerated(0.25) benign(0.032) TCGA-B0-5702-01 14 101341381 101341381 G T MIR665 RNA 0.08 TCGA-B0-5702-01 14 50206889 50206889 G A KLHDC1 Missense_Mutation p.A324T 0.14 tolerated(0.38) benign(0.011) TCGA-B0-5702-01 14 67805178 67805178 G A ATP6V1D 3'UTR 0.20 TCGA-B0-5702-01 15 35044996 35044996 G T GJD2 Missense_Mutation p.Q217K 0.07 deleterious(0) probably_damaging(0.999) TCGA-B0-5702-01 15 65628159 65628159 T A IGDCC3 Missense_Mutation p.D182V 0.09 tolerated(0.18) benign(0.315) TCGA-B0-5702-01 15 85213235 85213235 A T SEC11A 3'UTR 0.07 TCGA-B0-5702-01 16 19127313 19127313 C T ITPRIPL2 Silent p.Y510Y 0.08 TCGA-B0-5702-01 16 47698832 47698832 A C PHKB Missense_Mutation p.K791N 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-B0-5702-01 16 82069294 82069294 G - HSD17B2 Frame_Shift_Del 0.09 TCGA-B0-5702-01 17 27225663 27225663 C T DHRS13 Silent p.L310L 0.15 TCGA-B0-5702-01 17 40054059 40054059 C A ACLY Nonsense_Mutation p.E458* 0.11 TCGA-B0-5702-01 17 41345527 41345527 C A NBR1 Missense_Mutation p.Q466K 0.12 deleterious(0.03) benign(0.206) TCGA-B0-5702-01 17 56676681 56676681 G T TEX14 Silent p.G681G 0.04 TCGA-B0-5702-01 18 21508604 21508604 T C LAMA3 Missense_Mutation p.S2771P 0.14 possibly_damaging(0.737) TCGA-B0-5702-01 19 11558317 11558317 C T PRKCSH Missense_Mutation p.P305S 0.09 tolerated(0.19) benign(0.006) TCGA-B0-5702-01 19 20236202 20236202 G A CTC-260E6.2 RNA 0.08 TCGA-B0-5702-01 19 48608631 48608631 C A PLA2G4C Missense_Mutation p.V37L 0.14 deleterious(0.01) probably_damaging(0.984) TCGA-B0-5702-01 19 51363165 51363165 T A KLK3 Intron 0.06 TCGA-B0-5702-01 19 9225926 9225926 C T OR7G1 Missense_Mutation p.V172I 0.06 deleterious(0.05) benign(0.085) TCGA-B0-5702-01 1 152324078 152324078 C A FLG2 Nonsense_Mutation p.G2062* 0.12 TCGA-B0-5702-01 1 152326741 152326741 C T FLG2 Missense_Mutation p.G1174D 0.15 unknown(0) TCGA-B0-5702-01 1 153785772 153785772 G A GATAD2B Missense_Mutation p.T458I 0.04 deleterious(0) probably_damaging(0.999) TCGA-B0-5702-01 1 156764508 156764508 G T PRCC Missense_Mutation p.V411L 0.11 tolerated(0.52) benign(0.008) TCGA-B0-5702-01 1 183196680 183196680 A T LAMC2 Missense_Mutation p.D439V 0.11 deleterious(0.03) benign(0.272) TCGA-B0-5702-01 1 226561930 226561930 A G PARP1 Silent p.Y689Y 0.11 TCGA-B0-5702-01 1 237886484 237886484 G T RYR2 Missense_Mutation p.R3537S 0.10 benign(0.003) TCGA-B0-5702-01 1 41608634 41608634 C T SCMH1 Missense_Mutation p.D100N 0.09 deleterious(0) probably_damaging(1) TCGA-B0-5702-01 1 86362087 86362087 T G COL24A1 Silent p.S928S 0.13 TCGA-B0-5702-01 1 92470105 92470105 G A BRDT Silent p.R841R 0.09 TCGA-B0-5702-01 20 35526278 35526278 C T SAMHD1 Missense_Mutation p.A565T 0.06 deleterious(0.02) possibly_damaging(0.51) TCGA-B0-5702-01 20 49366295 49366295 A G PARD6B Missense_Mutation p.H130R 0.11 tolerated(0.2) benign(0.002) TCGA-B0-5702-01 20 57273810 57273810 A G NPEPL1 Missense_Mutation p.N193S 0.11 tolerated(0.08) benign(0.285) TCGA-B0-5702-01 22 24432627 24432627 C G CABIN1 Missense_Mutation p.Q32E 0.08 deleterious(0.05) probably_damaging(0.966) TCGA-B0-5702-01 22 41310325 41310325 G A XPNPEP3 Missense_Mutation p.G351D 0.11 deleterious(0.02) probably_damaging(1) TCGA-B0-5702-01 22 50558941 50558941 C T MOV10L1 Nonsense_Mutation p.R489* 0.14 TCGA-B0-5702-01 2 158165091 158165091 A C GALNT5 Missense_Mutation p.N845H 0.18 deleterious(0) probably_damaging(0.988) TCGA-B0-5702-01 2 170806129 170806129 T C UBR3 Silent p.A1033A 0.13 TCGA-B0-5702-01 2 170806130 170806130 C T UBR3 Nonsense_Mutation p.Q1034* 0.13 TCGA-B0-5702-01 2 48050392 48050392 A T FBXO11 Silent p.T502T 0.10 TCGA-B0-5702-01 3 12434123 12434123 G A PPARG Missense_Mutation p.R164Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-B0-5702-01 3 134268984 134268984 C T CEP63 Missense_Mutation p.T421I 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-B0-5702-01 3 196387147 196387147 C A NRROS Missense_Mutation p.N211K 0.29 deleterious(0) probably_damaging(0.975) TCGA-B0-5702-01 3 39185098 39185098 C A CSRNP1 Missense_Mutation p.E406D 0.11 tolerated(0.29) benign(0.009) TCGA-B0-5702-01 3 47164122 47164122 G - SETD2 Frame_Shift_Del p.I669* 0.13 TCGA-B0-5702-01 4 104062252 104062252 G T CENPE Missense_Mutation p.L1825I 0.06 benign(0.391) TCGA-B0-5702-01 4 73012865 73012865 C G NPFFR2 Missense_Mutation p.T302S 0.07 tolerated(0.31) possibly_damaging(0.598) TCGA-B0-5702-01 6 35088304 35088304 C A TCP11 Missense_Mutation p.A292S 0.06 tolerated(0.31) benign(0.05) TCGA-B0-5702-01 6 36177586 36177586 T C BRPF3 Missense_Mutation p.M587T 0.12 deleterious(0.05) benign(0.183) TCGA-B0-5702-01 6 76024808 76024808 G T FILIP1 Missense_Mutation p.A247E 0.05 deleterious(0) probably_damaging(0.995) TCGA-B0-5702-01 6 8413723 8413723 A G SLC35B3 3'UTR 0.11 TCGA-B0-5702-01 6 88074934 88074934 C T C6orf163 Silent p.I270I 0.09 TCGA-B0-5702-01 8 113564842 113564842 C A CSMD3 Missense_Mutation p.D1448Y 0.07 deleterious(0) probably_damaging(0.974) TCGA-B0-5702-01 8 113697717 113697717 A - CSMD3 Frame_Shift_Del p.T801Lfs*52 0.09 TCGA-B0-5702-01 8 125535229 125535229 A C TATDN1 Missense_Mutation p.L13V 0.10 deleterious(0) possibly_damaging(0.776) TCGA-B0-5702-01 8 21827777 21827777 T A XPO7 Missense_Mutation p.Y128N 0.15 tolerated(0.08) benign(0.206) TCGA-B0-5702-01 8 21996193 21996193 G T REEP4 Missense_Mutation p.Q223K 0.07 tolerated(0.07) benign(0.021) TCGA-B0-5702-01 8 36790510 36790510 C A KCNU1 Silent p.R1002R 0.11 TCGA-B0-5702-01 8 62370953 62370953 C T CLVS1 Missense_Mutation p.P277S 0.04 tolerated(0.41) benign(0.024) TCGA-B0-5702-01 8 62412012 62412012 A T CLVS1 Splice_Site p.X326_splice 0.08 TCGA-B0-5702-01 9 114476772 114476772 A T C9orf84 Missense_Mutation p.L726M 0.02 deleterious(0) probably_damaging(0.999) TCGA-B0-5702-01 9 17457562 17457562 A T CNTLN Missense_Mutation p.E1052V 0.07 deleterious(0) probably_damaging(0.964) TCGA-B0-5702-01 9 33318728 33318728 G A NFX1 Splice_Site p.X530_splice 0.05 TCGA-B0-5702-01 9 35090534 35090534 T G PIGO Missense_Mutation p.H928P 0.14 deleterious(0.01) benign(0.016) TCGA-B0-5702-01 9 95874559 95874559 T A C9orf89 Missense_Mutation p.C142S 0.16 tolerated(0.14) possibly_damaging(0.817) TCGA-B0-5702-01 X 102864047 102864047 G C TCEAL3 Missense_Mutation p.E19Q 0.24 tolerated(0.05) benign(0.225) TCGA-B0-5702-01 X 106236587 106236588 - A MORC4 Frame_Shift_Ins p.A61Cfs*16 0.15 TCGA-B0-5702-01 X 12734955 12734955 G A FRMPD4 Missense_Mutation p.D793N 0.16 deleterious(0) probably_damaging(0.979) TCGA-B0-5702-01 X 1585213 1585213 A G P2RY8 Missense_Mutation p.I80T 0.14 deleterious(0) probably_damaging(0.961) TCGA-B0-5702-01 X 17819452 17819452 G A RAI2 Missense_Mutation p.P227S 0.08 deleterious(0) unknown(0) TCGA-B0-5702-01 X 46522060 46522060 A C SLC9A7 Missense_Mutation p.F271C 0.22 deleterious(0) probably_damaging(1) TCGA-B0-5702-01 X 70824235 70824235 G A ACRC Missense_Mutation p.A370T 0.28 unknown(0) TCGA-B0-5703-01 10 101151192 101151192 A G CNNM1 Splice_Site p.X926_splice 0.31 TCGA-B0-5703-01 10 129906122 129906122 C T MKI67 Missense_Mutation p.G1328S 0.48 tolerated(0.1) benign(0.043) TCGA-B0-5703-01 10 22193512 22193512 T - DNAJC1 Frame_Shift_Del p.E254Kfs*4 0.26 TCGA-B0-5703-01 10 69651246 69651246 T A SIRT1 Missense_Mutation p.D292E 0.32 deleterious(0) probably_damaging(0.976) TCGA-B0-5703-01 10 69651247 69651247 C T SIRT1 Missense_Mutation p.P293S 0.32 deleterious(0) probably_damaging(1) TCGA-B0-5703-01 11 108056204 108056205 - T NPAT Frame_Shift_Ins p.N248Kfs*22 0.25 TCGA-B0-5703-01 11 108115600 108115600 C T ATM Nonsense_Mutation p.R250* 0.30 TCGA-B0-5703-01 11 108127062 108127062 G A ATM Missense_Mutation p.A749T 0.32 tolerated(0.1) probably_damaging(0.994) TCGA-B0-5703-01 11 108383643 108383643 C A EXPH5 Missense_Mutation p.C864F 0.04 tolerated(0.71) benign(0) TCGA-B0-5703-01 11 56431824 56431824 C A OR5AR1 Silent p.I221I 0.27 TCGA-B0-5703-01 11 67560717 67560717 G A FAM86C2P RNA 0.26 TCGA-B0-5703-01 12 51394164 51394164 A T SLC11A2 Silent p.A185A 0.05 TCGA-B0-5703-01 12 76739560 76739560 A G BBS10 3'UTR 0.29 TCGA-B0-5703-01 12 8048099 8048099 C T NANOGP1 RNA 0.04 TCGA-B0-5703-01 14 100934461 100934461 G A WDR25 Missense_Mutation p.S309N 0.31 deleterious(0) probably_damaging(0.998) TCGA-B0-5703-01 14 21789516 21789516 C T RPGRIP1 Silent p.T522T 0.04 TCGA-B0-5703-01 14 23247999 23247999 T C SLC7A7 Intron 0.32 TCGA-B0-5703-01 14 54948128 54948128 G A GMFB Missense_Mutation p.R67C 0.29 deleterious(0) probably_damaging(0.995) TCGA-B0-5703-01 14 70714061 70714061 G A ADAM21P1 RNA 0.22 TCGA-B0-5703-01 14 88658594 88658594 G A KCNK10 Missense_Mutation p.T281M 0.42 deleterious(0) probably_damaging(0.998) TCGA-B0-5703-01 14 95688029 95688029 T C CLMN Missense_Mutation p.N108S 0.34 tolerated(0.13) probably_damaging(0.954) TCGA-B0-5703-01 15 45879557 45879557 G C BLOC1S6 5'UTR 0.37 TCGA-B0-5703-01 15 70351055 70351055 A T TLE3 Missense_Mutation p.S289T 0.30 deleterious(0.03) benign(0.263) TCGA-B0-5703-01 16 21136611 21136611 G C DNAH3 Nonsense_Mutation p.S430* 0.33 TCGA-B0-5703-01 16 69729377 69729378 AT - NFAT5 Intron 0.24 TCGA-B0-5703-01 16 71967417 71967417 A G RP11-498D10.6 3'Flank 0.27 TCGA-B0-5703-01 16 89288521 89288521 C T ZNF778 Missense_Mutation p.S16L 0.03 tolerated(0.26) benign(0) TCGA-B0-5703-01 17 10429940 10429940 C T MYH2 Missense_Mutation p.R1388H 0.34 deleterious(0.01) possibly_damaging(0.73) TCGA-B0-5703-01 17 1840212 1840212 G A RTN4RL1 Missense_Mutation p.R302W 0.29 deleterious(0.03) benign(0.004) TCGA-B0-5703-01 17 19288733 19288734 AA - MFAP4 Frame_Shift_Del p.F116Lfs*6 0.26 TCGA-B0-5703-01 17 27182269 27182269 T C ERAL1 Missense_Mutation p.F73L 0.14 tolerated(0.47) benign(0.001) TCGA-B0-5703-01 17 30660439 30660439 T C C17orf75 Silent p.L324L 0.35 TCGA-B0-5703-01 17 33477188 33477188 G A UNC45B Silent p.R109R 0.37 TCGA-B0-5703-01 17 39535652 39535652 G A KRT34 Missense_Mutation p.R319C 0.06 tolerated(0.13) probably_damaging(0.993) TCGA-B0-5703-01 17 76421493 76421493 T C DNAH17 Missense_Mutation p.K4382E 0.14 benign(0.364) TCGA-B0-5703-01 19 39965287 39965287 C T SUPT5H Nonsense_Mutation p.Q985* 0.20 TCGA-B0-5703-01 19 41120329 41120329 C T LTBP4 Missense_Mutation p.A997V 0.50 tolerated(0.23) benign(0.022) TCGA-B0-5703-01 19 44732560 44732560 T A ZNF227 Intron 0.06 TCGA-B0-5703-01 19 4510945 4510945 T A PLIN4 Missense_Mutation p.K995N 0.28 deleterious(0.05) benign(0.202) TCGA-B0-5703-01 19 52034704 52034704 C A SIGLEC6 Missense_Mutation p.C46F 0.05 deleterious(0) probably_damaging(0.998) TCGA-B0-5703-01 19 9000513 9000513 G C MUC16 Missense_Mutation p.R13491G 0.27 possibly_damaging(0.898) TCGA-B0-5703-01 1 113192053 113192053 A T CAPZA1 Silent p.L39L 0.08 TCGA-B0-5703-01 1 118584465 118584465 T - SPAG17 Frame_Shift_Del p.E1006Sfs*10 0.28 TCGA-B0-5703-01 1 1309688 1309688 G A AURKAIP1 Silent p.L64L 0.21 TCGA-B0-5703-01 1 152083904 152083904 T C TCHH Missense_Mutation p.R597G 0.43 unknown(0) TCGA-B0-5703-01 1 159284265 159284265 A G OR10J3 Missense_Mutation p.F62S 0.04 deleterious(0) probably_damaging(0.918) TCGA-B0-5703-01 1 160160522 160160522 A C CASQ1 5'UTR 0.26 TCGA-B0-5703-01 1 169528479 169528479 T C F5 Silent p.L214L 0.30 TCGA-B0-5703-01 1 197404477 197404477 C A CRB1 Missense_Mutation p.H1162N 0.36 tolerated(0.53) benign(0.026) TCGA-B0-5703-01 1 240969479 240969479 G A RGS7 Silent p.N410N 0.10 TCGA-B0-5703-01 1 35320643 35320643 C G SMIM12 3'UTR 0.42 TCGA-B0-5703-01 20 1552666 1552666 C T SIRPB1 Missense_Mutation p.V151M 0.34 tolerated(0.13) benign(0.053) TCGA-B0-5703-01 20 39741521 39741521 A G TOP1 Missense_Mutation p.M470V 0.35 deleterious(0) possibly_damaging(0.469) TCGA-B0-5703-01 20 44521907 44521907 T C CTSA Missense_Mutation p.S235P 0.25 deleterious(0) probably_damaging(0.983) TCGA-B0-5703-01 20 56227136 56227136 C G PMEPA1 Missense_Mutation p.K279N 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-B0-5703-01 22 22893221 22893221 A C PRAME Silent p.L104L 0.31 TCGA-B0-5703-01 22 50356427 50356428 - C PIM3 Frame_Shift_Ins p.D237Rfs*61 0.43 TCGA-B0-5703-01 2 125521709 125521709 C T CNTNAP5 Nonsense_Mutation p.R839* 0.03 TCGA-B0-5703-01 2 128066283 128066283 G - MAP3K2 Frame_Shift_Del p.S505Afs*14 0.37 TCGA-B0-5703-01 2 162902066 162902066 A C DPP4 Missense_Mutation p.I114M 0.28 deleterious(0.02) possibly_damaging(0.465) TCGA-B0-5703-01 2 197777686 197777686 T G PGAP1 Missense_Mutation p.K190T 0.28 deleterious(0.03) probably_damaging(0.95) TCGA-B0-5703-01 2 210640619 210640619 G C UNC80 Missense_Mutation p.E50Q 0.36 probably_damaging(0.922) TCGA-B0-5703-01 2 241662861 241662861 C T KIF1A Nonsense_Mutation p.W1478* 0.13 TCGA-B0-5703-01 2 242082486 242082486 A G PASK 5'UTR 0.09 TCGA-B0-5703-01 2 70502693 70502693 G T PCYOX1 Missense_Mutation p.G252C 0.24 deleterious(0) probably_damaging(1) TCGA-B0-5703-01 2 86980658 86980658 C T RMND5A Silent p.V166V 0.32 TCGA-B0-5703-01 2 9484692 9484692 G A ASAP2 Missense_Mutation p.S294N 0.30 tolerated(0.26) benign(0.318) TCGA-B0-5703-01 3 10191558 10191558 T C VHL Missense_Mutation p.L184P 0.48 deleterious(0) probably_damaging(1) TCGA-B0-5703-01 3 149684007 149684007 G A PFN2 3'UTR 0.64 TCGA-B0-5703-01 3 164754179 164754179 T G SI Missense_Mutation p.K838T 0.34 tolerated(0.36) benign(0.001) TCGA-B0-5703-01 3 39227553 39227553 G - XIRP1 Frame_Shift_Del p.R1129Efs*8 0.56 TCGA-B0-5703-01 4 183714853 183714853 A G TENM3 Missense_Mutation p.Y2343C 0.32 deleterious(0) probably_damaging(0.926) TCGA-B0-5703-01 4 20529994 20529994 C T SLIT2 Intron 0.29 TCGA-B0-5703-01 4 3478155 3478155 T G DOK7 Missense_Mutation p.L140V 0.28 tolerated(0.29) benign(0.023) TCGA-B0-5703-01 5 10407230 10407230 T C MARCH6 Missense_Mutation p.I490T 0.30 tolerated(0.79) benign(0.007) TCGA-B0-5703-01 5 1331925 1331925 G A CLPTM1L Missense_Mutation p.S322F 0.29 deleterious(0) probably_damaging(1) TCGA-B0-5703-01 5 135382106 135382106 G A TGFBI Silent p.K127K 0.33 TCGA-B0-5703-01 5 135382107 135382107 C T TGFBI Silent p.L128L 0.32 TCGA-B0-5703-01 5 179994125 179994125 T C CNOT6 Missense_Mutation p.V252A 0.26 deleterious(0.03) benign(0) TCGA-B0-5703-01 5 65455077 65455077 C G SREK1 Missense_Mutation p.S109C 0.30 deleterious(0) benign(0.437) TCGA-B0-5703-01 5 76348572 76348572 T C AGGF1 Silent p.Y469Y 0.29 TCGA-B0-5703-01 6 150047983 150047983 T C NUP43 3'UTR 0.27 TCGA-B0-5703-01 6 26017495 26017495 C A HIST1H1A Missense_Mutation p.A156S 0.27 tolerated(0.33) unknown(0) TCGA-B0-5703-01 6 36043701 36043701 C A MAPK14 Missense_Mutation p.P191H 0.30 deleterious(0) probably_damaging(0.998) TCGA-B0-5703-01 6 44921067 44921067 G C SUPT3H Missense_Mutation p.Q272E 0.28 tolerated(0.33) possibly_damaging(0.62) TCGA-B0-5703-01 6 55620443 55620443 C A BMP5 Missense_Mutation p.C418F 0.06 deleterious(0) probably_damaging(1) TCGA-B0-5703-01 7 121637955 121637955 C G PTPRZ1 Missense_Mutation p.L379V 0.41 tolerated(0.07) possibly_damaging(0.566) TCGA-B0-5703-01 7 123672832 123672832 G T TMEM229A Missense_Mutation p.R76S 0.15 tolerated(0.39) benign(0.144) TCGA-B0-5703-01 7 131866156 131866156 G A PLXNA4 Missense_Mutation p.T1159M 0.23 deleterious(0) possibly_damaging(0.736) TCGA-B0-5703-01 7 142881197 142881197 C - TAS2R39 Frame_Shift_Del p.L230Cfs*2 0.21 TCGA-B0-5703-01 7 156432294 156432294 G T C7orf13 3'UTR 0.22 TCGA-B0-5703-01 7 156432295 156432295 A T C7orf13 3'UTR 0.22 TCGA-B0-5703-01 7 6550536 6550536 T G GRID2IP Intron 0.13 TCGA-B0-5703-01 8 37688398 37688398 C T GPR124 Missense_Mutation p.L297F 0.21 tolerated(0.81) benign(0.258) TCGA-B0-5703-01 8 55540593 55540593 T G RP1 Missense_Mutation p.F1384C 0.26 tolerated(0.21) benign(0.004) TCGA-B0-5703-01 9 112005948 112005948 A G EPB41L4B Silent p.P453P 0.32 TCGA-B0-5703-01 9 75309453 75309471 GTTTAGGTGAAGAGGAAGA - TMC1 Splice_Site p.X22_splice 0.20 TCGA-B0-5703-01 9 79325303 79325303 G T PRUNE2 Silent p.L629L 0.08 TCGA-B0-5705-01 10 27434352 27434352 C T YME1L1 Intron 0.26 TCGA-B0-5705-01 11 123814182 123814182 G T OR6T1 Missense_Mutation p.R122S 0.20 deleterious(0) probably_damaging(0.973) TCGA-B0-5705-01 11 1275577 1275577 G T MUC5B Missense_Mutation p.G5158V 0.25 unknown(0) TCGA-B0-5705-01 11 9165820 9165820 G A DENND5A Missense_Mutation p.P1043L 0.14 deleterious(0) probably_damaging(0.934) TCGA-B0-5705-01 12 106633704 106633704 T C CKAP4 Missense_Mutation p.R303G 0.37 deleterious(0.01) benign(0.311) TCGA-B0-5705-01 12 20893281 20893281 C T SLCO1C1 Missense_Mutation p.P571L 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-B0-5705-01 12 21471822 21471822 G T SLCO1A2 Silent p.S32S 0.29 TCGA-B0-5705-01 12 49167327 49167327 T - ADCY6 Frame_Shift_Del p.Y849Ffs*49 0.26 TCGA-B0-5705-01 12 50189406 50189406 T G NCKAP5L Missense_Mutation p.D746A 0.25 tolerated(0.06) benign(0.423) TCGA-B0-5705-01 12 54107576 54107576 G C CALCOCO1 Missense_Mutation p.P567R 0.23 deleterious(0.04) benign(0.028) TCGA-B0-5705-01 12 6804739 6804739 C T PIANP Silent p.L228L 0.36 TCGA-B0-5705-01 13 21751241 21751241 C G MRP63 Missense_Mutation p.H62Q 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-B0-5705-01 13 60566604 60566604 T C DIAPH3 Intron 0.37 TCGA-B0-5705-01 14 24617487 24617487 A G RNF31 Silent p.R120R 0.31 TCGA-B0-5705-01 15 42743699 42743699 A G ZNF106 Silent p.N234N 0.25 TCGA-B0-5705-01 15 43661240 43661240 T A ZSCAN29 Missense_Mutation p.Q135L 0.28 tolerated(0.44) probably_damaging(0.985) TCGA-B0-5705-01 15 50867287 50867287 A G TRPM7 Missense_Mutation p.I1594T 0.33 tolerated(0.51) benign(0.023) TCGA-B0-5705-01 16 3065984 3065984 C T CLDN6 Silent p.L13L 0.34 TCGA-B0-5705-01 16 31424171 31424171 T G ITGAD Missense_Mutation p.S574A 0.25 tolerated(0.14) benign(0.051) TCGA-B0-5705-01 16 4606857 4606857 C A C16orf96 Missense_Mutation p.H123N 0.20 tolerated(0.73) benign(0.093) TCGA-B0-5705-01 16 49670777 49670777 C T ZNF423 Silent p.E762E 0.27 TCGA-B0-5705-01 16 53340243 53340243 T C CHD9 Silent p.N2238N 0.31 TCGA-B0-5705-01 16 67304703 67304703 G T SLC9A5 Nonsense_Mutation p.E761* 0.26 TCGA-B0-5705-01 16 67304704 67304704 A G SLC9A5 Missense_Mutation p.E761G 0.25 tolerated(0.25) benign(0.051) TCGA-B0-5705-01 16 77325284 77325284 C T ADAMTS18 Missense_Mutation p.R1094Q 0.24 deleterious(0.02) possibly_damaging(0.905) TCGA-B0-5705-01 17 16021256 16021256 A G NCOR1 Silent p.F667F 0.29 TCGA-B0-5705-01 17 37371369 37371369 A G STAC2 Splice_Site p.X233_splice 0.06 TCGA-B0-5705-01 17 40485988 40485988 A T STAT3 Missense_Mutation p.Y293N 0.31 deleterious(0) probably_damaging(0.996) TCGA-B0-5705-01 18 34833813 34833813 C T CELF4 Silent p.V474V 0.35 TCGA-B0-5705-01 19 12256227 12256228 TG - ZNF625 Frame_Shift_Del p.Q335Mfs*3 0.18 TCGA-B0-5705-01 19 2853429 2853429 C A ZNF555 Missense_Mutation p.Q456K 0.19 tolerated(0.26) benign(0.167) TCGA-B0-5705-01 19 37310789 37310789 G C ZNF790 Missense_Mutation p.Q153E 0.28 tolerated(0.05) benign(0.018) TCGA-B0-5705-01 19 41895707 41895707 C A EXOSC5 Missense_Mutation p.G163V 0.33 deleterious(0.01) probably_damaging(0.973) TCGA-B0-5705-01 19 49468840 49468840 C A FTL Missense_Mutation p.Q26K 0.36 tolerated(0.13) benign(0.023) TCGA-B0-5705-01 19 49558850 49558850 G A CGB7 5'UTR 0.36 TCGA-B0-5705-01 19 50001200 50001200 A G RPS11 Missense_Mutation p.R84G 0.29 deleterious(0.02) benign(0.344) TCGA-B0-5705-01 19 57642738 57642738 C A USP29 Silent p.R899R 0.20 TCGA-B0-5705-01 19 57642739 57642739 G T USP29 Missense_Mutation p.R899L 0.19 deleterious(0.01) benign(0.204) TCGA-B0-5705-01 19 57642746 57642746 T C USP29 Silent p.P901P 0.24 TCGA-B0-5705-01 19 59010218 59010218 C G SLC27A5 Missense_Mutation p.E610D 0.35 tolerated(0.1) benign(0.008) TCGA-B0-5705-01 1 114267480 114267480 C G PHTF1 Missense_Mutation p.R175P 0.26 tolerated(0.15) possibly_damaging(0.578) TCGA-B0-5705-01 1 156243168 156243168 T A SMG5 Silent p.S206S 0.30 TCGA-B0-5705-01 1 19446815 19446815 T C UBR4 Missense_Mutation p.Q3390R 0.36 possibly_damaging(0.693) TCGA-B0-5705-01 1 197446956 197446956 C T CRB1 Nonsense_Mutation p.R1390* 0.29 TCGA-B0-5705-01 1 22216601 22216604 ATCC CACCG HSPG2 Frame_Shift_Ins p.D149Gfs*63 0.36 TCGA-B0-5705-01 1 2435907 2435907 G A PLCH2 3'UTR 0.39 TCGA-B0-5705-01 1 29185683 29185683 G A OPRD1 Missense_Mutation p.A149T 0.34 deleterious(0) probably_damaging(1) TCGA-B0-5705-01 1 38353034 38353034 T G INPP5B Missense_Mutation p.K335Q 0.27 deleterious(0.01) possibly_damaging(0.509) TCGA-B0-5705-01 1 44878049 44878049 C A RNF220 Missense_Mutation p.H94N 0.24 tolerated(0.09) probably_damaging(0.98) TCGA-B0-5705-01 1 47649487 47649487 C T PDZK1IP1 3'UTR 0.21 TCGA-B0-5705-01 1 888619 888619 G T NOC2L Missense_Mutation p.A313D 0.37 deleterious(0) probably_damaging(0.984) TCGA-B0-5705-01 1 89582840 89582840 C T GBP2 Missense_Mutation p.V235I 0.31 tolerated(0.51) benign(0.039) TCGA-B0-5705-01 20 30784297 30784297 C T PLAGL2 Silent p.L483L 0.35 TCGA-B0-5705-01 20 52835595 52835595 G T PFDN4 Missense_Mutation p.R104I 0.33 deleterious(0.02) benign(0.378) TCGA-B0-5705-01 21 15599585 15599585 C T RBM11 Nonsense_Mutation p.R273* 0.32 TCGA-B0-5705-01 21 18931362 18931363 TG - CXADR Frame_Shift_Del p.C162* 0.22 TCGA-B0-5705-01 21 31973474 31973474 G T KRTAP22-1 Missense_Mutation p.G12V 0.29 unknown(0) TCGA-B0-5705-01 21 45053272 45053272 C A HSF2BP Nonsense_Mutation p.E108* 0.29 TCGA-B0-5705-01 22 30415808 30415816 CCCTCTCTT - MTMR3 In_Frame_Del p.D720_L723delinsE 0.25 TCGA-B0-5705-01 22 51018844 51018844 T C CHKB Missense_Mutation p.K227E 0.27 tolerated(0.67) benign(0.004) TCGA-B0-5705-01 2 128878020 128878020 G A UGGT1 Nonsense_Mutation p.W321* 0.31 TCGA-B0-5705-01 2 179634827 179634827 C T TTN Silent p.V2867V 0.28 TCGA-B0-5705-01 2 219886632 219886632 G C CCDC108 Silent p.A1000A 0.30 TCGA-B0-5705-01 2 283163 283163 C A FAM150B Missense_Mutation p.C134F 0.29 deleterious(0) benign(0.342) TCGA-B0-5705-01 2 70441538 70441538 C G TIA1 Missense_Mutation p.G326A 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-B0-5705-01 2 97267383 97267383 T C KANSL3 Silent p.S871S 0.11 TCGA-B0-5705-01 3 10191570 10191570 T C VHL Missense_Mutation p.L188P 0.37 deleterious(0) probably_damaging(1) TCGA-B0-5705-01 3 121137382 121137382 C T STXBP5L Missense_Mutation p.A1166V 0.28 deleterious(0.01) benign(0.271) TCGA-B0-5705-01 3 179527284 179527284 G T PEX5L Silent p.R443R 0.04 TCGA-B0-5705-01 3 52651383 52651383 A - PBRM1 Frame_Shift_Del p.I571Mfs*16 0.32 TCGA-B0-5705-01 4 40356027 40356027 C T CHRNA9 Silent p.I310I 0.28 TCGA-B0-5705-01 4 81967318 81967318 C T BMP3 Missense_Mutation p.A248V 0.29 deleterious(0) probably_damaging(0.945) TCGA-B0-5705-01 4 8218768 8218768 G - SH3TC1 Frame_Shift_Del p.R238Sfs*38 0.29 TCGA-B0-5705-01 5 10988302 10988303 TG - CTNND2 Frame_Shift_Del p.T1088Rfs*15 0.24 TCGA-B0-5705-01 5 156753229 156753229 T C CYFIP2 Missense_Mutation p.L652P 0.21 deleterious(0) probably_damaging(0.995) TCGA-B0-5705-01 5 176471492 176471492 G A ZNF346 Missense_Mutation p.A159T 0.22 tolerated(0.06) possibly_damaging(0.499) TCGA-B0-5705-01 5 176733243 176733243 T C MXD3 3'Flank 0.44 TCGA-B0-5705-01 5 178555036 178555036 G A ADAMTS2 Silent p.N847N 0.41 TCGA-B0-5705-01 5 55256363 55256363 G T IL6ST Silent p.T280T 0.42 TCGA-B0-5705-01 6 108985392 108985392 A G FOXO3 Silent p.Q452Q 0.35 TCGA-B0-5705-01 6 142623349 142623349 G A GPR126 5'UTR 0.30 TCGA-B0-5705-01 6 154412361 154412361 C A OPRM1 Silent p.A399A 0.30 TCGA-B0-5705-01 6 158569914 158569914 A G SERAC1 Missense_Mutation p.L113P 0.27 deleterious(0) possibly_damaging(0.746) TCGA-B0-5705-01 6 33235040 33235040 G C VPS52 Silent p.R350R 0.05 TCGA-B0-5705-01 6 43308012 43308012 T A ZNF318 Missense_Mutation p.N1242Y 0.28 possibly_damaging(0.691) TCGA-B0-5705-01 7 105098210 105098210 T - PUS7 3'UTR 0.24 TCGA-B0-5705-01 7 117876197 117876197 C T ANKRD7 Nonsense_Mutation p.Q191* 0.26 TCGA-B0-5705-01 7 127222351 127222351 T C GCC1 Missense_Mutation p.H682R 0.29 tolerated(0.33) benign(0.001) TCGA-B0-5705-01 8 113529433 113529433 C T CSMD3 Missense_Mutation p.R1529H 0.32 deleterious(0.04) probably_damaging(0.993) TCGA-B0-5705-01 8 71039142 71039142 T G NCOA2 Silent p.P1274P 0.03 TCGA-B0-5705-01 8 95777480 95777480 G T DPY19L4 Missense_Mutation p.A314S 0.23 tolerated(0.19) benign(0.249) TCGA-B0-5705-01 8 95777481 95777481 C A DPY19L4 Missense_Mutation p.A314D 0.23 deleterious(0.01) probably_damaging(0.933) TCGA-B0-5705-01 9 131193563 131193563 A T CERCAM Missense_Mutation p.H395L 0.33 deleterious(0) probably_damaging(0.984) TCGA-B0-5705-01 9 33464888 33464888 T G NOL6 Missense_Mutation p.N923T 0.25 tolerated(0.34) benign(0.035) TCGA-B0-5705-01 9 74674164 74674187 GAATAAGATAACACCTAAGAGGCG - C9orf57 In_Frame_Del p.R43_F50del 0.12 TCGA-B0-5705-01 X 106885678 106885678 G A PRPS1 Missense_Mutation p.R163K 0.28 tolerated(0.86) benign(0) TCGA-B0-5705-01 X 129147106 129147106 G T BCORL1 Missense_Mutation p.D120Y 0.34 unknown(0) TCGA-B0-5705-01 X 134428150 134428150 G A ZNF75D 5'UTR 0.22 TCGA-B0-5705-01 X 151128394 151128395 - T GABRE Frame_Shift_Ins p.I234Nfs*3 0.32 TCGA-B0-5705-01 X 153524197 153524197 C T TKTL1 5'UTR 0.19 TCGA-B0-5706-01 10 135106637 135106637 C T TUBGCP2 Silent p.L338L 0.13 TCGA-B0-5706-01 10 34626340 34626340 T G PARD3 Missense_Mutation p.D811A 0.22 deleterious(0.01) possibly_damaging(0.622) TCGA-B0-5706-01 10 87966375 87966375 G A GRID1 Missense_Mutation p.A89V 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-B0-5706-01 10 89692903 89692906 ACGA - PTEN Frame_Shift_Del p.R130Lfs*3 0.25 TCGA-B0-5706-01 11 132527098 132527098 G A OPCML Missense_Mutation p.P95L 0.20 tolerated(0.12) benign(0.04) TCGA-B0-5706-01 11 34670585 34670585 G C EHF Silent p.L143L 0.17 TCGA-B0-5706-01 11 65391403 65391403 G A PCNXL3 Missense_Mutation p.V839M 0.09 deleterious(0) probably_damaging(0.998) TCGA-B0-5706-01 12 105536914 105536914 A G KIAA1033 Missense_Mutation p.S635G 0.20 tolerated(0.4) benign(0.002) TCGA-B0-5706-01 12 12315207 12315207 C - LRP6 Frame_Shift_Del p.K733Nfs*15 0.17 TCGA-B0-5706-01 12 42503369 42503369 G A GXYLT1 Missense_Mutation p.P204L 0.21 deleterious(0) probably_damaging(0.997) TCGA-B0-5706-01 12 51449626 51449626 T G LETMD1 Missense_Mutation p.F174C 0.20 deleterious(0) probably_damaging(0.995) TCGA-B0-5706-01 12 78516003 78516003 G A NAV3 Missense_Mutation p.V1345M 0.15 tolerated(0.08) possibly_damaging(0.9) TCGA-B0-5706-01 13 109859148 109859148 C A MYO16 Missense_Mutation p.N1847K 0.17 tolerated_low_confidence(0.08) benign(0.036) TCGA-B0-5706-01 14 95081158 95081158 A G SERPINA3 Missense_Mutation p.N127S 0.26 tolerated(0.62) benign(0.009) TCGA-B0-5706-01 15 34640772 34640772 T A NUTM1 Missense_Mutation p.S207T 0.25 tolerated(0.32) probably_damaging(0.947) TCGA-B0-5706-01 15 44920966 44920966 C T SPG11 Silent p.K656K 0.04 TCGA-B0-5706-01 15 89864148 89864148 C G POLG Missense_Mutation p.E944Q 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-B0-5706-01 16 2293316 2293316 T G ECI1 Intron 0.18 TCGA-B0-5706-01 16 3860701 3860701 A G CREBBP Missense_Mutation p.V293A 0.24 possibly_damaging(0.766) TCGA-B0-5706-01 17 37681093 37681093 C T CDK12 Nonsense_Mutation p.Q1088* 0.20 TCGA-B0-5706-01 17 39659631 39659631 G C KRT13 Missense_Mutation p.L215V 0.16 deleterious(0) probably_damaging(0.955) TCGA-B0-5706-01 17 42141197 42141197 G T LSM12 Missense_Mutation p.P77H 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-B0-5706-01 17 79941541 79941541 C T ASPSCR1 Silent p.N90N 0.26 TCGA-B0-5706-01 18 39629582 39629582 G C PIK3C3 Intron 0.16 TCGA-B0-5706-01 18 43700027 43700027 G A HAUS1 Splice_Site p.X159_splice 0.25 TCGA-B0-5706-01 18 9254423 9254423 A - ANKRD12 Frame_Shift_Del p.E388Kfs*74 0.15 TCGA-B0-5706-01 19 12841590 12841590 A G C19orf43 3'UTR 0.27 TCGA-B0-5706-01 19 2477618 2477618 A T GADD45B 3'UTR 0.24 TCGA-B0-5706-01 19 42860310 42860310 G T MEGF8 Missense_Mutation p.V1423F 0.18 deleterious(0) benign(0.444) TCGA-B0-5706-01 19 51219979 51219979 G A SHANK1 Silent p.D66D 0.12 TCGA-B0-5706-01 19 54377173 54377173 C T MYADM Silent p.H130H 0.20 TCGA-B0-5706-01 1 152282336 152282336 T A FLG Missense_Mutation p.S1676C 0.21 possibly_damaging(0.902) TCGA-B0-5706-01 1 156628842 156628842 G A BCAN Silent p.E884E 0.12 TCGA-B0-5706-01 1 156628843 156628843 G C BCAN Missense_Mutation p.D885H 0.12 tolerated_low_confidence(0.06) benign(0.312) TCGA-B0-5706-01 1 16256538 16256538 C T SPEN Missense_Mutation p.S1268F 0.23 probably_damaging(0.996) TCGA-B0-5706-01 1 18808838 18808838 T C KLHDC7A Missense_Mutation p.Y455H 0.19 deleterious(0) probably_damaging(0.998) TCGA-B0-5706-01 1 27684801 27684801 G A MAP3K6 Missense_Mutation p.S929F 0.20 tolerated(0.32) benign(0.099) TCGA-B0-5706-01 1 33160860 33160860 C G SYNC Missense_Mutation p.R280T 0.23 deleterious(0.03) possibly_damaging(0.677) TCGA-B0-5706-01 1 53250580 53250580 T - ZYG11B Frame_Shift_Del p.M375Rfs*16 0.21 TCGA-B0-5706-01 1 65831861 65831861 T C DNAJC6 Silent p.T175T 0.26 TCGA-B0-5706-01 1 77510087 77510087 C T ST6GALNAC5 Missense_Mutation p.R154C 0.40 probably_damaging(0.965) TCGA-B0-5706-01 1 84945169 84945169 C A RPF1 Silent p.R69R 0.17 TCGA-B0-5706-01 21 33688961 33688961 G A URB1 Silent p.F2150F 0.15 TCGA-B0-5706-01 22 50657570 50657570 T C TUBGCP6 Missense_Mutation p.E1518G 0.10 deleterious(0.04) probably_damaging(0.966) TCGA-B0-5706-01 2 219267407 219267407 C T CTDSP1 Intron 0.05 TCGA-B0-5706-01 3 187897064 187897064 G T AC022498.1 Silent p.A31A 0.47 TCGA-B0-5706-01 3 38390050 38390050 G T XYLB Missense_Mutation p.V23F 0.25 deleterious(0) probably_damaging(0.947) TCGA-B0-5706-01 3 93624946 93624946 C A PROS1 Nonsense_Mutation p.G130* 0.23 TCGA-B0-5706-01 4 128905554 128905554 C T C4orf29 Silent p.S51S 0.21 TCGA-B0-5706-01 4 155219151 155219151 A T DCHS2 Silent p.P1650P 0.22 TCGA-B0-5706-01 4 66467834 66467834 C G EPHA5 Silent p.G145G 0.19 TCGA-B0-5706-01 4 69972925 69972925 T C UGT2B7 Silent p.D345D 0.21 TCGA-B0-5706-01 5 126776499 126776499 G A MEGF10 Missense_Mutation p.D768N 0.20 deleterious(0.02) benign(0.258) TCGA-B0-5706-01 5 150843145 150843145 G T SLC36A1 Missense_Mutation p.G59C 0.24 tolerated(0.18) benign(0.167) TCGA-B0-5706-01 5 178369697 178369697 A G ZNF454 5'UTR 0.27 TCGA-B0-5706-01 5 34823798 34823798 T G RAI14 Missense_Mutation p.S620R 0.17 tolerated(0.1) benign(0.252) TCGA-B0-5706-01 5 66459285 66459285 C T MAST4 Silent p.H1426H 0.29 TCGA-B0-5706-01 6 10911079 10911079 G T SYCP2L Missense_Mutation p.A299S 0.22 tolerated(0.22) probably_damaging(0.935) TCGA-B0-5706-01 6 130761752 130761752 G C TMEM200A Missense_Mutation p.G62A 0.14 deleterious(0) probably_damaging(1) TCGA-B0-5706-01 6 142741085 142741085 A T GPR126 Missense_Mutation p.S1055C 0.22 deleterious(0) probably_damaging(0.978) TCGA-B0-5706-01 6 26413447 26413447 G A BTN3A1 Missense_Mutation p.E357K 0.18 deleterious(0.03) benign(0.208) TCGA-B0-5706-01 6 34008002 34008007 CAGAAT - GRM4 In_Frame_Del p.D485_S486del 0.14 TCGA-B0-5706-01 6 90573431 90573432 TG - CASP8AP2 RNA 0.17 TCGA-B0-5706-01 7 150731895 150731895 C T ABCB8 Silent p.S248S 0.19 TCGA-B0-5706-01 7 23000857 23000858 CA - FAM126A Frame_Shift_Del p.L276Sfs*4 0.16 TCGA-B0-5706-01 7 96113212 96113212 C A C7orf76 Missense_Mutation p.G116C 0.15 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-B0-5706-01 8 75937789 75937789 G C CRISPLD1 Missense_Mutation p.C418S 0.22 deleterious(0.02) probably_damaging(1) TCGA-B0-5706-01 9 100843297 100843297 T C NANS Missense_Mutation p.L268P 0.23 tolerated(0.3) benign(0.319) TCGA-B0-5706-01 9 125674096 125674096 G T ZBTB6 Missense_Mutation p.L86M 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-B0-5706-01 9 139305134 139305134 T C PMPCA Missense_Mutation p.V5A 0.22 tolerated_low_confidence(0.14) unknown(0) TCGA-B0-5706-01 9 139401207 139401207 C T NOTCH1 Missense_Mutation p.V1288I 0.17 tolerated(0.17) benign(0.014) TCGA-B0-5706-01 9 74971943 74971943 G A ZFAND5 Nonsense_Mutation p.Q133* 0.19 TCGA-B0-5706-01 X 153215018 153215018 C T HCFC1 Missense_Mutation p.M2018I 0.37 tolerated_low_confidence(0.4) possibly_damaging(0.48) TCGA-B0-5707-01 11 118430578 118430578 T C IFT46 Intron 0.31 TCGA-B0-5707-01 11 118899051 118899051 C G SLC37A4 Missense_Mutation p.W78C 0.30 deleterious(0.03) probably_damaging(0.973) TCGA-B0-5707-01 11 130058115 130058115 T C ST14 Missense_Mutation p.I63T 0.32 tolerated(0.2) benign(0.002) TCGA-B0-5707-01 11 73105299 73105299 A G RELT Missense_Mutation p.E242G 0.31 deleterious(0.02) benign(0.025) TCGA-B0-5707-01 12 54422514 54422514 A G HOXC6 Missense_Mutation p.Y70C 0.31 tolerated(0.38) probably_damaging(0.997) TCGA-B0-5707-01 13 33635592 33635592 T C KL Silent p.D792D 0.35 TCGA-B0-5707-01 15 65449219 65449219 T C CLPX Missense_Mutation p.H370R 0.27 deleterious(0.01) probably_damaging(1) TCGA-B0-5707-01 15 65957694 65957694 C T DENND4A Nonsense_Mutation p.W1782* 0.34 TCGA-B0-5707-01 15 71403498 71403498 T G CT62 Silent p.R135R 0.31 TCGA-B0-5707-01 15 99926442 99926442 A G LRRC28 3'UTR 0.32 TCGA-B0-5707-01 16 23702118 23702118 G A ERN2 3'UTR 0.20 TCGA-B0-5707-01 17 63052574 63052574 C G GNA13 Missense_Mutation p.K46N 0.22 deleterious(0.03) possibly_damaging(0.76) TCGA-B0-5707-01 18 34846493 34846493 A G CELF4 Intron 0.32 TCGA-B0-5707-01 18 56246350 56246350 A G ALPK2 Missense_Mutation p.L553P 0.39 tolerated(0.06) benign(0.079) TCGA-B0-5707-01 18 61305037 61305038 - AA SERPINB4 Frame_Shift_Ins p.C364Sfs*11 0.26 TCGA-B0-5707-01 19 12060408 12060408 T C ZNF700 Silent p.F523F 0.37 TCGA-B0-5707-01 19 34832722 34832722 A G KIAA0355 Missense_Mutation p.H628R 0.33 tolerated_low_confidence(0.55) benign(0.001) TCGA-B0-5707-01 19 55713578 55713578 C T PTPRH Silent p.E333E 0.41 TCGA-B0-5707-01 1 214830403 214830403 T C CENPF Silent p.H2871H 0.28 TCGA-B0-5707-01 1 237796991 237796991 A G RYR2 Silent p.E2223E 0.34 TCGA-B0-5707-01 1 32782361 32782361 G C HDAC1 Missense_Mutation p.E86D 0.29 tolerated(0.51) benign(0.001) TCGA-B0-5707-01 1 3548219 3548219 T C WRAP73 Missense_Mutation p.N351D 0.10 deleterious(0.02) benign(0.013) TCGA-B0-5707-01 1 62228715 62228715 G A INADL Missense_Mutation p.R18H 0.33 deleterious(0.03) possibly_damaging(0.67) TCGA-B0-5707-01 22 24437602 24437602 G A CABIN1 Missense_Mutation p.D76N 0.26 tolerated(0.12) probably_damaging(0.939) TCGA-B0-5707-01 22 30885908 30885908 G T SEC14L4 3'UTR 0.37 TCGA-B0-5707-01 22 30885909 30885909 G T SEC14L4 3'UTR 0.37 TCGA-B0-5707-01 22 38084989 38084989 C G NOL12 Missense_Mutation p.T124S 0.33 tolerated(0.9) benign(0.003) TCGA-B0-5707-01 2 118583851 118583851 A G DDX18 Missense_Mutation p.I510V 0.21 deleterious(0.01) probably_damaging(0.953) TCGA-B0-5707-01 2 202687539 202687539 C T CDK15 Silent p.L152L 0.35 TCGA-B0-5707-01 3 137717737 137717737 G T CLDN18 Missense_Mutation p.L9F 0.64 tolerated(0.1) benign(0.077) TCGA-B0-5707-01 3 167000259 167000259 G C ZBBX Missense_Mutation p.T674R 0.24 deleterious(0) probably_damaging(0.923) TCGA-B0-5707-01 3 173322301 173322301 A G NLGN1 5'UTR 0.05 TCGA-B0-5707-01 4 151604748 151604748 T C LRBA Missense_Mutation p.N1959S 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-B0-5707-01 5 102326008 102326008 G A PAM Missense_Mutation p.G506R 0.31 tolerated(0.18) probably_damaging(1) TCGA-B0-5707-01 5 54579287 54579287 T C DHX29 Missense_Mutation p.Q570R 0.31 tolerated(0.08) benign(0.004) TCGA-B0-5707-01 6 136500189 136500189 G A PDE7B Silent p.R286R 0.38 TCGA-B0-5707-01 6 56394387 56394387 C A DST Missense_Mutation p.Q3195H 0.30 possibly_damaging(0.45) TCGA-B0-5707-01 6 56394388 56394388 T A DST Missense_Mutation p.Q3195L 0.29 probably_damaging(0.966) TCGA-B0-5707-01 6 70916883 70916883 G T COL19A1 Missense_Mutation p.G1112C 0.36 deleterious(0) probably_damaging(1) TCGA-B0-5707-01 6 7583844 7583844 G T DSP Missense_Mutation p.D2117Y 0.28 probably_damaging(0.987) TCGA-B0-5707-01 7 116422132 116422132 T G MET Missense_Mutation p.L1223V 0.43 deleterious(0) probably_damaging(0.988) TCGA-B0-5707-01 7 128519646 128519646 A T KCP RNA 0.47 TCGA-B0-5707-01 7 5396761 5396761 C A TNRC18 Silent p.G1660G 0.52 TCGA-B0-5707-01 8 144124475 144124475 C G C8orf31 Silent p.T19T 0.38 TCGA-B0-5707-01 8 146067912 146067912 T C ZNF7 Missense_Mutation p.C474R 0.30 deleterious(0) probably_damaging(1) TCGA-B0-5707-01 9 140137360 140137360 T C TUBB4B Silent p.S230S 0.19 TCGA-B0-5707-01 X 129150165 129150165 G A BCORL1 Silent p.V1139V 0.25 TCGA-B0-5709-01 10 104118423 104118423 G T GBF1 Silent p.G316G 0.18 TCGA-B0-5709-01 10 133961488 133961488 C G JAKMIP3 Silent p.L594L 0.11 TCGA-B0-5709-01 11 121384922 121384922 A G SORL1 Missense_Mutation p.N368S 0.06 tolerated(0.18) benign(0.012) TCGA-B0-5709-01 11 125479362 125479362 C A STT3A Nonsense_Mutation p.S332* 0.18 TCGA-B0-5709-01 11 47599123 47599123 T C KBTBD4 Silent p.Q159Q 0.13 TCGA-B0-5709-01 11 60183100 60183100 A C MS4A14 Missense_Mutation p.Q253P 0.10 deleterious(0.01) benign(0.031) TCGA-B0-5709-01 12 1025464 1025464 C A RAD52 Intron 0.31 TCGA-B0-5709-01 12 121176678 121176678 G A ACADS Missense_Mutation p.R330H 0.20 deleterious(0.03) probably_damaging(0.984) TCGA-B0-5709-01 12 23998950 23998950 T A SOX5 Nonsense_Mutation p.K150* 0.13 TCGA-B0-5709-01 12 48737208 48737208 C T ZNF641 Missense_Mutation p.E289K 0.06 tolerated(0.08) probably_damaging(0.995) TCGA-B0-5709-01 12 52910988 52910988 C T KRT5 Missense_Mutation p.R374Q 0.08 tolerated(0.18) benign(0.362) TCGA-B0-5709-01 12 6554632 6554632 C A CD27 Missense_Mutation p.A60D 0.13 deleterious(0.03) possibly_damaging(0.832) TCGA-B0-5709-01 13 23907922 23907922 G C SACS Missense_Mutation p.L3365V 0.19 benign(0) TCGA-B0-5709-01 13 77629761 77629761 A G MYCBP2 Missense_Mutation p.F4489L 0.14 probably_damaging(0.937) TCGA-B0-5709-01 14 69992827 69992827 T C PLEKHD1 Missense_Mutation p.L304P 0.21 tolerated(0.2) possibly_damaging(0.732) TCGA-B0-5709-01 15 38591742 38591742 C G SPRED1 Missense_Mutation p.D67E 0.10 deleterious(0) probably_damaging(0.986) TCGA-B0-5709-01 15 51778458 51778458 G T DMXL2 Nonsense_Mutation p.S1765* 0.16 TCGA-B0-5709-01 15 51778460 51778460 A G DMXL2 Silent p.T1764T 0.15 TCGA-B0-5709-01 15 57489997 57489997 A G TCF12 Missense_Mutation p.K185E 0.15 deleterious(0.01) benign(0.028) TCGA-B0-5709-01 15 57489998 57489998 A G TCF12 Missense_Mutation p.K185R 0.16 deleterious(0.03) possibly_damaging(0.492) TCGA-B0-5709-01 15 68480214 68480214 T G PIAS1 3'UTR 0.17 TCGA-B0-5709-01 15 68582835 68582835 A T FEM1B Missense_Mutation p.N380I 0.14 deleterious(0.02) possibly_damaging(0.758) TCGA-B0-5709-01 16 20824600 20824600 G A AC004381.6 Missense_Mutation p.G76D 0.16 deleterious(0) probably_damaging(0.995) TCGA-B0-5709-01 16 31388553 31388553 C T ITGAX Missense_Mutation p.P919L 0.21 deleterious(0.02) probably_damaging(1) TCGA-B0-5709-01 17 11648186 11648186 C T DNAH9 Missense_Mutation p.P2062S 0.12 possibly_damaging(0.795) TCGA-B0-5709-01 17 45656769 45656769 A - NPEPPS Frame_Shift_Del p.K145Rfs*2 0.12 TCGA-B0-5709-01 17 46805408 46805408 C A HOXB13 Missense_Mutation p.C183F 0.18 tolerated(0.08) possibly_damaging(0.716) TCGA-B0-5709-01 17 64873504 64873505 - TG CACNG5 Frame_Shift_Ins p.G20Vfs*22 0.28 TCGA-B0-5709-01 17 79257250 79257250 C A SLC38A10 Missense_Mutation p.D106Y 0.09 deleterious(0) probably_damaging(1) TCGA-B0-5709-01 18 3135721 3135721 G A MYOM1 Missense_Mutation p.A678V 0.25 tolerated(0.9) benign(0.02) TCGA-B0-5709-01 19 35991482 35991482 C T DMKN Missense_Mutation p.G414S 0.08 tolerated(0.05) unknown(0) TCGA-B0-5709-01 19 39759207 39759207 G T IFNL2 5'UTR 0.12 TCGA-B0-5709-01 19 47228597 47228597 C G STRN4 Silent p.R495R 0.13 TCGA-B0-5709-01 19 53910951 53910951 A T ZNF765 Missense_Mutation p.D48V 0.11 deleterious(0.03) probably_damaging(0.934) TCGA-B0-5709-01 19 58453407 58453407 G C ZNF256 Missense_Mutation p.H257D 0.07 deleterious(0) probably_damaging(0.999) TCGA-B0-5709-01 1 104114048 104114048 A G AMY2B Intron 0.14 TCGA-B0-5709-01 1 154527220 154527220 C A UBE2Q1 Missense_Mutation p.E193D 0.12 tolerated(0.46) benign(0.003) TCGA-B0-5709-01 1 156909401 156909401 C A ARHGEF11 Missense_Mutation p.R1345S 0.15 tolerated_low_confidence(0.12) benign(0.038) TCGA-B0-5709-01 1 167365627 167365627 G T POU2F1 Missense_Mutation p.K364N 0.23 deleterious(0) unknown(0) TCGA-B0-5709-01 1 201041938 201041938 C T CACNA1S Silent p.E724E 0.17 TCGA-B0-5709-01 1 201779861 201779861 T C NAV1 Missense_Mutation p.F1591S 0.09 deleterious(0) probably_damaging(0.989) TCGA-B0-5709-01 1 27101658 27101658 A G ARID1A Missense_Mutation p.E1647G 0.20 probably_damaging(0.968) TCGA-B0-5709-01 1 53427254 53427254 C T SCP2 Missense_Mutation p.A159V 0.03 deleterious(0.04) benign(0.009) TCGA-B0-5709-01 1 60325915 60325915 G C HOOK1 Missense_Mutation p.G483R 0.13 deleterious(0.03) probably_damaging(0.938) TCGA-B0-5709-01 20 19977395 19977395 G A RIN2 Missense_Mutation p.R807Q 0.14 deleterious(0.03) benign(0.027) TCGA-B0-5709-01 20 37650496 37650496 G T DHX35 Missense_Mutation p.C504F 0.10 deleterious(0) probably_damaging(1) TCGA-B0-5709-01 21 33697561 33697561 G A URB1 Missense_Mutation p.A1700V 0.09 deleterious(0) probably_damaging(0.957) TCGA-B0-5709-01 21 35144369 35144369 G C ITSN1 Silent p.T349T 0.16 TCGA-B0-5709-01 2 103414319 103414319 C A TMEM182 Intron 0.18 TCGA-B0-5709-01 2 166731270 166731270 G T TTC21B Missense_Mutation p.P1316T 0.18 deleterious(0) probably_damaging(0.998) TCGA-B0-5709-01 2 179441843 179441843 C G TTN Missense_Mutation p.K23073N 0.06 TCGA-B0-5709-01 2 190324065 190324065 G A WDR75 Silent p.R231R 0.13 TCGA-B0-5709-01 2 234235795 234235795 C T SAG Missense_Mutation p.A155V 0.17 tolerated(0.06) possibly_damaging(0.47) TCGA-B0-5709-01 2 70057234 70057234 G A GMCL1 Silent p.E70E 0.10 TCGA-B0-5709-01 2 75907426 75907426 G T GCFC2 Missense_Mutation p.L569I 0.15 tolerated(0.95) benign(0.003) TCGA-B0-5709-01 3 10188268 10188268 G - VHL Frame_Shift_Del p.P138Hfs*21 0.14 TCGA-B0-5709-01 3 12545142 12545142 C T TSEN2 Silent p.L230L 0.23 TCGA-B0-5709-01 3 149040099 149040118 TGATGAGGCAGATGATCACT - TM4SF18 Frame_Shift_Del p.V173Sfs*39 0.09 TCGA-B0-5709-01 3 155493591 155493591 C A C3orf33 Missense_Mutation p.R31I 0.15 deleterious(0.01) possibly_damaging(0.622) TCGA-B0-5709-01 3 195511908 195511908 G A MUC4 Silent p.D2181D 0.11 TCGA-B0-5709-01 3 49662433 49662433 G A BSN Missense_Mutation p.E84K 0.38 unknown(0) TCGA-B0-5709-01 3 52427482 52427482 A G DNAH1 Missense_Mutation p.N3536S 0.07 benign(0.155) TCGA-B0-5709-01 3 52439161 52439161 G - BAP1 Frame_Shift_Del p.L361* 0.24 TCGA-B0-5709-01 3 9807787 9807787 C G OGG1 Missense_Mutation p.H415D 0.20 deleterious_low_confidence(0) benign(0.227) TCGA-B0-5709-01 4 184203759 184203759 G T WWC2 Intron 0.14 TCGA-B0-5709-01 4 78666018 78666018 C A CNOT6L Missense_Mutation p.V191F 0.03 deleterious(0) probably_damaging(0.999) TCGA-B0-5709-01 5 111496807 111496807 A G EPB41L4A 3'Flank 0.18 TCGA-B0-5709-01 5 14693052 14693052 C T FAM105B Silent p.V318V 0.14 TCGA-B0-5709-01 5 60827477 60827477 T A ZSWIM6 Missense_Mutation p.S724T 0.18 tolerated(0.14) benign(0.036) TCGA-B0-5709-01 5 73163922 73163922 T C ARHGEF28 Intron 0.12 TCGA-B0-5709-01 5 90281200 90281200 C A GPR98 Missense_Mutation p.H6005N 0.16 possibly_damaging(0.728) TCGA-B0-5709-01 6 147588238 147588238 T C STXBP5 Missense_Mutation p.S217P 0.13 tolerated(0.06) benign(0.071) TCGA-B0-5709-01 6 160509177 160509177 G T IGF2R Missense_Mutation p.K2106N 0.13 tolerated(0.49) benign(0.01) TCGA-B0-5709-01 6 28329175 28329175 A G ZKSCAN3 Silent p.Q159Q 0.11 TCGA-B0-5709-01 6 29054173 29054173 A G OR2B3 Silent p.L285L 0.15 TCGA-B0-5709-01 6 70878567 70878567 C T COL19A1 Silent p.G854G 0.15 TCGA-B0-5709-01 7 107334908 107334908 C T SLC26A4 Silent p.L442L 0.08 TCGA-B0-5709-01 7 74470047 74470047 G A WBSCR16 Missense_Mutation p.R398C 0.06 tolerated(0.08) benign(0.009) TCGA-B0-5709-01 7 82997339 82997339 T A SEMA3E Nonsense_Mutation p.R631* 0.15 TCGA-B0-5709-01 7 94540664 94540664 C T PPP1R9A Silent p.D413D 0.15 TCGA-B0-5709-01 7 95216797 95216797 C - PDK4 Frame_Shift_Del p.R305Pfs*14 0.11 TCGA-B0-5709-01 8 103664082 103664082 C A KLF10 Missense_Mutation p.A160S 0.19 deleterious(0.01) possibly_damaging(0.863) TCGA-B0-5709-01 8 118552346 118552346 C A MED30 3'UTR 0.10 TCGA-B0-5709-01 8 18729236 18729236 A - PSD3 Frame_Shift_Del p.S380Pfs*102 0.14 TCGA-B0-5709-01 8 75227397 75227397 T C JPH1 Missense_Mutation p.T280A 0.09 tolerated(0.08) benign(0.005) TCGA-B0-5709-01 9 127177673 127177673 A T PSMB7 Missense_Mutation p.V11D 0.11 tolerated(0.57) benign(0.025) TCGA-B0-5709-01 9 71842779 71842780 - A TJP2 Frame_Shift_Ins p.R469Kfs*23 0.15 TCGA-B0-5709-01 X 104961379 104961379 C G IL1RAPL2 Silent p.P264P 0.13 TCGA-B0-5709-01 X 107938641 107938641 G A COL4A5 Missense_Mutation p.A1656T 0.16 possibly_damaging(0.833) TCGA-B0-5709-01 X 123197875 123197875 C T STAG2 Missense_Mutation p.R667W 0.15 deleterious(0) possibly_damaging(0.764) TCGA-B0-5709-01 X 132351937 132351937 C T TFDP3 Silent p.K117K 0.10 TCGA-B0-5709-01 X 140785800 140785800 G A SPANXD Missense_Mutation p.P39L 0.05 tolerated(1) probably_damaging(0.999) TCGA-B0-5709-01 X 150156447 150156447 C G HMGB3 3'UTR 0.25 TCGA-B0-5709-01 X 154010064 154010064 C A MPP1 Silent p.P320P 0.14 TCGA-B0-5709-01 X 15591566 15591566 C A ACE2 Nonsense_Mutation p.E489* 0.17 TCGA-B0-5709-01 X 41202084 41202084 G C DDX3X Missense_Mutation p.E180Q 0.15 tolerated(0.3) benign(0.016) TCGA-B0-5709-01 X 85906058 85906058 G C DACH2 Missense_Mutation p.M220I 0.14 tolerated(0.23) benign(0.354) TCGA-B0-5710-01 10 26313006 26313006 T G MYO3A Missense_Mutation p.F263V 0.29 deleterious(0) probably_damaging(0.973) TCGA-B0-5710-01 10 72462194 72462194 G A ADAMTS14 Missense_Mutation p.A217T 0.06 tolerated(0.48) benign(0.005) TCGA-B0-5710-01 10 81697577 81697589 GCCAAGCACTGCC - SFTPD 3'UTR 0.24 TCGA-B0-5710-01 10 90591656 90591656 C A ANKRD22 Missense_Mutation p.R50L 0.32 tolerated(0.53) benign(0.025) TCGA-B0-5710-01 11 5528857 5528857 G A UBQLN3 Silent p.D644D 0.25 TCGA-B0-5710-01 11 61511889 61511889 C T DAGLA Silent p.I1019I 0.28 TCGA-B0-5710-01 11 61543864 61543864 A G MYRF Missense_Mutation p.N487D 0.12 deleterious(0) probably_damaging(0.945) TCGA-B0-5710-01 11 62933648 62933648 A G SLC22A25 Missense_Mutation p.F385L 0.06 tolerated(0.07) benign(0.261) TCGA-B0-5710-01 12 124383326 124383326 C A DNAH10 Missense_Mutation p.A3084D 0.21 benign(0.03) TCGA-B0-5710-01 12 125398050 125398052 TGA - UBC In_Frame_Del p.I89del 0.20 TCGA-B0-5710-01 12 21008017 21008017 T - LST3 Frame_Shift_Del p.M48* 0.26 TCGA-B0-5710-01 12 6619242 6619242 C A NCAPD2 Missense_Mutation p.H69N 0.28 tolerated(0.07) benign(0.275) TCGA-B0-5710-01 13 45841372 45841372 A C GTF2F2 Missense_Mutation p.E164A 0.20 deleterious(0.03) benign(0.042) TCGA-B0-5710-01 14 101351021 101351021 C T RTL1 Silent p.A35A 0.50 TCGA-B0-5710-01 14 20850092 20850092 G A TEP1 Silent p.C1468C 0.06 TCGA-B0-5710-01 14 91975891 91975891 C T SMEK1 Missense_Mutation p.R34Q 0.62 tolerated(0.16) benign(0.275) TCGA-B0-5710-01 15 43653099 43653099 G A ZSCAN29 3'UTR 0.21 TCGA-B0-5710-01 15 43653101 43653101 C T ZSCAN29 3'UTR 0.19 TCGA-B0-5710-01 15 91304206 91304206 A C BLM Missense_Mutation p.K535Q 0.26 tolerated(0.07) benign(0.168) TCGA-B0-5710-01 16 70594436 70594436 G A SF3B3 Missense_Mutation p.R692Q 0.34 deleterious(0) probably_damaging(0.99) TCGA-B0-5710-01 17 29687577 29687577 G T NF1 Nonsense_Mutation p.G2745* 0.26 TCGA-B0-5710-01 17 34958701 34958701 G - MRM1 Frame_Shift_Del p.D155Ifs*33 0.23 TCGA-B0-5710-01 17 42426617 42426617 G T GRN Missense_Mutation p.A29S 0.27 tolerated(0.07) possibly_damaging(0.589) TCGA-B0-5710-01 17 47103846 47103846 G C IGF2BP1 Missense_Mutation p.A102P 0.06 deleterious(0) probably_damaging(0.984) TCGA-B0-5710-01 17 62576936 62576936 T C SMURF2 Missense_Mutation p.H248R 0.26 tolerated(0.12) probably_damaging(0.939) TCGA-B0-5710-01 18 6264037 6264037 A G L3MBTL4 Missense_Mutation p.V43A 0.04 tolerated(0.93) benign(0.001) TCGA-B0-5710-01 19 36362618 36362618 G A APLP1 Silent p.G214G 0.33 TCGA-B0-5710-01 19 7703632 7703632 C T STXBP2 Missense_Mutation p.R20W 0.23 tolerated(0.08) benign(0.007) TCGA-B0-5710-01 1 154112289 154112289 G A NUP210L Missense_Mutation p.P236S 0.26 tolerated(0.64) benign(0.008) TCGA-B0-5710-01 1 26897964 26897964 A T RPS6KA1 Missense_Mutation p.S548C 0.17 deleterious(0) probably_damaging(0.987) TCGA-B0-5710-01 1 54370442 54370442 A G DIO1 Silent p.A147A 0.21 TCGA-B0-5710-01 1 76255648 76255648 G A RABGGTB Silent p.L107L 0.28 TCGA-B0-5710-01 22 50960439 50960439 G A NCAPH2 Missense_Mutation p.R378Q 0.20 deleterious(0.02) possibly_damaging(0.845) TCGA-B0-5710-01 2 108627273 108627273 G A SLC5A7 Missense_Mutation p.D567N 0.26 tolerated_low_confidence(0.14) benign(0.001) TCGA-B0-5710-01 2 11911638 11911638 C A LPIN1 Missense_Mutation p.S192R 0.18 tolerated(0.1) benign(0.3) TCGA-B0-5710-01 2 179603926 179603926 C A TTN Missense_Mutation p.E4678D 0.06 TCGA-B0-5710-01 2 179605552 179605552 G A TTN Silent p.G4136G 0.23 TCGA-B0-5710-01 2 207009710 207009712 TAC - NDUFS1 In_Frame_Del p.S273del 0.17 TCGA-B0-5710-01 2 24435521 24435521 T - ITSN2 Frame_Shift_Del p.S1363Vfs*16 0.22 TCGA-B0-5710-01 2 32523381 32523382 - T YIPF4 Splice_Site p.X161_splice 0.15 TCGA-B0-5710-01 3 111343188 111343188 T A CD96 Missense_Mutation p.S436T 0.24 deleterious(0.03) possibly_damaging(0.609) TCGA-B0-5710-01 3 195066024 195066024 C A ACAP2 Missense_Mutation p.R103I 0.36 deleterious(0) probably_damaging(0.963) TCGA-B0-5710-01 3 3214484 3214484 A G CRBN Missense_Mutation p.L168P 0.04 deleterious(0.01) possibly_damaging(0.701) TCGA-B0-5710-01 3 52643654 52643654 C - PBRM1 Frame_Shift_Del p.D748Mfs*27 0.26 TCGA-B0-5710-01 5 176728945 176728945 A G RAB24 Silent p.A176A 0.19 TCGA-B0-5710-01 6 122768141 122768141 G C SERINC1 Missense_Mutation p.T335S 0.22 tolerated(1) benign(0.044) TCGA-B0-5710-01 6 150023180 150023180 C T LATS1 Missense_Mutation p.R28Q 0.26 tolerated_low_confidence(0.35) benign(0.003) TCGA-B0-5710-01 7 72892210 72892210 T C BAZ1B Silent p.E527E 0.06 TCGA-B0-5710-01 7 73245666 73245666 C T CLDN4 Silent p.T45T 0.27 TCGA-B0-5710-01 8 41804117 41804117 A G KAT6A Missense_Mutation p.I663T 0.35 probably_damaging(1) TCGA-B0-5710-01 9 79461509 79461509 A G PRUNE2 Missense_Mutation p.S144P 0.29 deleterious(0) possibly_damaging(0.815) TCGA-B0-5710-01 X 73962035 73962035 G T KIAA2022 Missense_Mutation p.T786N 0.49 tolerated(0.09) benign(0.005) TCGA-B0-5711-01 11 46567203 46567203 G A AMBRA1 Missense_Mutation p.R168W 0.14 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-B0-5711-01 11 6806283 6806283 C A OR2AG1 Missense_Mutation p.N5K 0.35 deleterious(0) probably_damaging(1) TCGA-B0-5711-01 13 21557681 21557681 C A LATS2 Nonsense_Mutation p.E722* 0.31 TCGA-B0-5711-01 14 36841025 36841025 G A DPPA3P2 RNA 0.46 TCGA-B0-5711-01 14 76118207 76118207 A T C14orf1 Missense_Mutation p.F84I 0.36 deleterious(0) probably_damaging(1) TCGA-B0-5711-01 15 77471484 77471485 TA C PEAK1 Frame_Shift_Del p.F928Lfs*121 0.26 TCGA-B0-5711-01 16 3293876 3293876 G A MEFV Silent p.G592G 0.17 TCGA-B0-5711-01 18 13737037 13737037 G T RNMT Missense_Mutation p.K194N 0.15 tolerated(0.13) benign(0.062) TCGA-B0-5711-01 18 29788192 29788192 A T MEP1B Missense_Mutation p.R293W 0.38 deleterious(0) possibly_damaging(0.762) TCGA-B0-5711-01 18 47438527 47438527 A C MYO5B Missense_Mutation p.F703V 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-B0-5711-01 19 39216363 39216363 G A ACTN4 Splice_Site p.X671_splice 0.44 TCGA-B0-5711-01 19 39597629 39597629 C T PAPL Missense_Mutation p.P386S 0.38 tolerated(0.17) benign(0.06) TCGA-B0-5711-01 19 40199946 40199946 G A LGALS14 Missense_Mutation p.S167N 0.37 tolerated(0.17) benign(0.004) TCGA-B0-5711-01 19 42910438 42910438 T A LIPE Missense_Mutation p.D747V 0.39 deleterious(0) probably_damaging(0.988) TCGA-B0-5711-01 19 9960334 9960334 A G PIN1 3'UTR 0.16 TCGA-B0-5711-01 1 182794926 182794926 A - NPL Frame_Shift_Del p.Q250Rfs*10 0.22 TCGA-B0-5711-01 1 27180348 27180348 C T ZDHHC18 3'UTR 0.29 TCGA-B0-5711-01 1 46212019 46212019 A T IPP Missense_Mutation p.L22H 0.28 tolerated(0.36) benign(0.376) TCGA-B0-5711-01 21 33067196 33067196 G A SCAF4 Missense_Mutation p.P389L 0.29 possibly_damaging(0.632) TCGA-B0-5711-01 21 47663535 47663535 G T MCM3AP Missense_Mutation p.L1714I 0.31 deleterious(0) probably_damaging(0.991) TCGA-B0-5711-01 2 189962055 189962055 C T COL5A2 Missense_Mutation p.G135E 0.16 probably_damaging(0.999) TCGA-B0-5711-01 2 215880269 215880269 T C ABCA12 Missense_Mutation p.Y634C 0.38 deleterious(0) probably_damaging(0.99) TCGA-B0-5711-01 2 54081819 54081819 G C GPR75 Missense_Mutation p.N25K 0.11 tolerated_low_confidence(0.1) probably_damaging(0.996) TCGA-B0-5711-01 2 89265957 89265957 G C IGKV1-6 Missense_Mutation p.Q59E 0.26 deleterious(0) possibly_damaging(0.894) TCGA-B0-5711-01 3 10191527 10191527 A - VHL Frame_Shift_Del p.N174Ifs*28 0.31 TCGA-B0-5711-01 3 39136315 39136315 C G WDR48 3'UTR 0.12 TCGA-B0-5711-01 3 52643898 52643898 A T PBRM1 Nonsense_Mutation p.Y666* 0.36 TCGA-B0-5711-01 4 89912229 89912229 A - FAM13A Frame_Shift_Del p.L167Pfs*9 0.15 TCGA-B0-5711-01 5 156589921 156589921 C T FAM71B Missense_Mutation p.S452N 0.03 tolerated(0.13) benign(0.113) TCGA-B0-5711-01 5 5462477 5462477 G T KIAA0947 Silent p.V1010V 0.29 TCGA-B0-5711-01 6 158495714 158495714 G T SYNJ2 Missense_Mutation p.D746Y 0.23 deleterious(0) probably_damaging(0.995) TCGA-B0-5711-01 6 29407843 29407843 C T OR10C1 Silent p.S17S 0.26 TCGA-B0-5711-01 6 53135507 53135507 T C ELOVL5 Missense_Mutation p.I241V 0.23 tolerated(0.06) benign(0.03) TCGA-B0-5711-01 6 62604655 62604655 G T KHDRBS2 Missense_Mutation p.A232E 0.29 tolerated(0.35) benign(0.029) TCGA-B0-5711-01 8 13251072 13251072 G A DLC1 Missense_Mutation p.P435L 0.05 deleterious(0) possibly_damaging(0.802) TCGA-B0-5711-01 9 104187311 104187312 - A ALDOB Frame_Shift_Ins p.L271Ffs*7 0.27 TCGA-B0-5711-01 9 19096686 19096686 G A HAUS6 Silent p.T70T 0.07 TCGA-B0-5711-01 9 72892386 72892386 C T SMC5 Nonsense_Mutation p.Q181* 0.22 TCGA-B0-5712-01 10 105006454 105006454 C G RPEL1 3'UTR 0.38 TCGA-B0-5712-01 10 105215351 105215351 C A CALHM1 Nonsense_Mutation p.E237* 0.36 TCGA-B0-5712-01 10 17165680 17165680 G A CUBN Silent p.D132D 0.25 TCGA-B0-5712-01 10 28149666 28149666 C G ARMC4 Missense_Mutation p.R970P 0.31 deleterious(0.02) probably_damaging(0.923) TCGA-B0-5712-01 10 63851371 63851371 A G ARID5B Missense_Mutation p.I717V 0.32 tolerated(0.59) possibly_damaging(0.651) TCGA-B0-5712-01 10 72511387 72511387 A G ADAMTS14 Missense_Mutation p.K864E 0.34 deleterious(0.01) probably_damaging(1) TCGA-B0-5712-01 10 81272785 81272785 A G EIF5AL1 Missense_Mutation p.Y127C 0.40 deleterious(0) possibly_damaging(0.789) TCGA-B0-5712-01 10 99213413 99213413 C T ZDHHC16 Missense_Mutation p.A228V 0.34 deleterious(0.04) benign(0.444) TCGA-B0-5712-01 11 122930898 122930898 T C HSPA8 Missense_Mutation p.I164V 0.39 deleterious_low_confidence(0.04) benign(0.001) TCGA-B0-5712-01 11 16774369 16774369 T A C11orf58 Silent p.S82S 0.34 TCGA-B0-5712-01 11 20403771 20403771 T C HTATIP2 Silent p.S197S 0.33 TCGA-B0-5712-01 11 61109346 61109346 C A DAK Missense_Mutation p.T206N 0.29 tolerated(0.09) benign(0.363) TCGA-B0-5712-01 11 614335 614335 G T IRF7 Missense_Mutation p.P186H 0.45 tolerated(0.06) possibly_damaging(0.78) TCGA-B0-5712-01 11 61549236 61549236 C T MYRF Nonsense_Mutation p.R986* 0.36 TCGA-B0-5712-01 11 63177323 63177323 A G SLC22A9 Missense_Mutation p.T551A 0.20 deleterious(0.02) possibly_damaging(0.619) TCGA-B0-5712-01 11 65380540 65380540 G A MAP3K11 Missense_Mutation p.H230Y 0.30 deleterious(0) benign(0.391) TCGA-B0-5712-01 11 76909563 76909563 G A MYO7A Missense_Mutation p.V1489I 0.30 tolerated(0.2) benign(0.397) TCGA-B0-5712-01 11 77672030 77672030 G - INTS4 Frame_Shift_Del p.P209Hfs*8 0.27 TCGA-B0-5712-01 11 870149 870149 C G CHID1 Missense_Mutation p.R377T 0.19 tolerated(0.14) benign(0.007) TCGA-B0-5712-01 11 9228258 9228258 C T DENND5A Missense_Mutation p.V85I 0.30 tolerated(0.22) benign(0.053) TCGA-B0-5712-01 12 124069310 124069310 A G TMED2 Missense_Mutation p.M43V 0.35 tolerated(0.19) benign(0.01) TCGA-B0-5712-01 12 124218515 124218515 G C ATP6V0A2 Missense_Mutation p.G231R 0.28 deleterious(0) probably_damaging(1) TCGA-B0-5712-01 12 40757280 40757280 A G LRRK2 Missense_Mutation p.N2369D 0.33 tolerated(0.14) benign(0.003) TCGA-B0-5712-01 12 41967638 41967638 G C PDZRN4 Missense_Mutation p.K1019N 0.23 deleterious(0) possibly_damaging(0.907) TCGA-B0-5712-01 12 49666782 49666782 T C TUBA1C Silent p.A374A 0.35 TCGA-B0-5712-01 12 51467805 51467805 A T CSRNP2 Missense_Mutation p.V71E 0.33 deleterious(0) probably_damaging(0.996) TCGA-B0-5712-01 12 53452893 53452893 C - TENC1 Frame_Shift_Del p.R501Gfs*29 0.31 TCGA-B0-5712-01 12 53621180 53621180 G C RARG Silent p.G50G 0.36 TCGA-B0-5712-01 12 93192829 93192829 T C EEA1 Missense_Mutation p.M936V 0.17 tolerated(1) benign(0) TCGA-B0-5712-01 13 113181276 113181276 G A TUBGCP3 Missense_Mutation p.S512F 0.40 deleterious(0.03) benign(0.016) TCGA-B0-5712-01 14 60069841 60069841 C A RTN1 Missense_Mutation p.A744S 0.38 deleterious(0) probably_damaging(0.996) TCGA-B0-5712-01 14 65544727 65544727 C - MAX Frame_Shift_Del p.A67Pfs*103 0.27 TCGA-B0-5712-01 14 70991488 70991488 T G ADAM20 Missense_Mutation p.N46T 0.41 tolerated(0.11) benign(0.013) TCGA-B0-5712-01 14 75230946 75230947 - C YLPM1 Frame_Shift_Ins p.G255Wfs*3 0.42 TCGA-B0-5712-01 15 22472946 22472946 C A IGHV4OR15-8 Missense_Mutation p.D109Y 0.10 deleterious(0) probably_damaging(1) TCGA-B0-5712-01 15 41823330 41823330 C T RPAP1 Silent p.E278E 0.35 TCGA-B0-5712-01 15 67664907 67664907 T C IQCH Silent p.I404I 0.03 TCGA-B0-5712-01 15 72338967 72338967 G A MYO9A 5'UTR 0.33 TCGA-B0-5712-01 15 94942208 94942208 A - MCTP2 Frame_Shift_Del p.N603Ifs*5 0.26 TCGA-B0-5712-01 16 10997754 10997754 T A CIITA Splice_Site p.X313_splice 0.31 TCGA-B0-5712-01 16 30455759 30455759 G T SEPHS2 Silent p.A430A 0.29 TCGA-B0-5712-01 16 56473652 56473652 C G NUDT21 Missense_Mutation p.G130R 0.37 deleterious(0) probably_damaging(0.999) TCGA-B0-5712-01 16 89702720 89702720 C T DPEP1 Missense_Mutation p.R96W 0.18 deleterious(0) probably_damaging(1) TCGA-B0-5712-01 17 1782610 1782610 G A RPA1 Missense_Mutation p.M287I 0.27 tolerated(0.69) benign(0) TCGA-B0-5712-01 17 1782612 1782612 C T RPA1 Missense_Mutation p.P288L 0.28 tolerated(0.18) benign(0.111) TCGA-B0-5712-01 17 27000506 27000506 A C SUPT6H Missense_Mutation p.K29N 0.29 tolerated_low_confidence(0.17) unknown(0) TCGA-B0-5712-01 17 28022532 28022533 - G SSH2 Frame_Shift_Ins p.Q74Pfs*40 0.27 TCGA-B0-5712-01 17 44091681 44091681 C T MAPT Missense_Mutation p.H665Y 0.39 deleterious(0) probably_damaging(0.996) TCGA-B0-5712-01 17 45747173 45747173 C T KPNB1 Silent p.L452L 0.40 TCGA-B0-5712-01 17 4916956 4916956 C T KIF1C Silent p.H500H 0.40 TCGA-B0-5712-01 17 56809962 56809963 AG - RAD51C Intron 0.28 TCGA-B0-5712-01 17 7228990 7228990 G T NEURL4 Missense_Mutation p.L446I 0.26 deleterious(0.01) benign(0.267) TCGA-B0-5712-01 17 7721011 7721011 G A DNAH2 Missense_Mutation p.V3385I 0.10 possibly_damaging(0.591) TCGA-B0-5712-01 18 72180800 72180800 T A CNDP2 Nonsense_Mutation p.L250* 0.33 TCGA-B0-5712-01 18 72247364 72247364 A G CNDP1 Splice_Site p.X390_splice 0.26 TCGA-B0-5712-01 19 2794798 2794798 C T THOP1 Missense_Mutation p.S89F 0.34 deleterious(0.04) probably_damaging(1) TCGA-B0-5712-01 19 47424034 47424034 T C ARHGAP35 Missense_Mutation p.I701T 0.47 deleterious(0) benign(0.1) TCGA-B0-5712-01 19 9076119 9076119 A C MUC16 Missense_Mutation p.L3776W 0.29 unknown(0) TCGA-B0-5712-01 1 100613725 100613725 C T TRMT13 Nonsense_Mutation p.Q365* 0.21 TCGA-B0-5712-01 1 11174411 11174411 C T MTOR Missense_Mutation p.V2422I 0.38 tolerated(0.49) probably_damaging(0.992) TCGA-B0-5712-01 1 147092835 147092835 C T BCL9 Silent p.S958S 0.15 TCGA-B0-5712-01 1 151108514 151108514 T A SEMA6C Missense_Mutation p.H411L 0.33 tolerated(0.1) benign(0.402) TCGA-B0-5712-01 1 153653153 153653153 G T NPR1 Missense_Mutation p.V300F 0.45 tolerated(0.07) benign(0.148) TCGA-B0-5712-01 1 155290484 155290484 G C RUSC1 5'Flank 0.25 TCGA-B0-5712-01 1 161722158 161722158 A - DUSP12 Frame_Shift_Del p.E193Dfs*21 0.26 TCGA-B0-5712-01 1 192128415 192128415 G A RGS18 Missense_Mutation p.R62H 0.25 tolerated(1) benign(0) TCGA-B0-5712-01 1 210415007 210415007 A C SERTAD4 Silent p.I132I 0.37 TCGA-B0-5712-01 1 249151460 249151460 C T ZNF692 Missense_Mutation p.E155K 0.39 tolerated(0.12) benign(0.014) TCGA-B0-5712-01 20 17600277 17600277 C T RRBP1 Splice_Site p.X792_splice 0.19 TCGA-B0-5712-01 20 31383331 31383331 C A DNMT3B Missense_Mutation p.Q415K 0.21 tolerated(0.16) benign(0.015) TCGA-B0-5712-01 20 36642156 36642156 G T TTI1 Silent p.L21L 0.36 TCGA-B0-5712-01 20 61981066 61981066 C T CHRNA4 Missense_Mutation p.R566Q 0.33 tolerated(0.45) benign(0.068) TCGA-B0-5712-01 2 125555791 125555791 C G CNTNAP5 Silent p.S1036S 0.40 TCGA-B0-5712-01 2 130832301 130832301 T G POTEF Missense_Mutation p.K915T 0.33 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-B0-5712-01 2 179467028 179467028 G T TTN Silent p.I18367I 0.14 TCGA-B0-5712-01 2 202430518 202430518 G A ALS2CR11 Missense_Mutation p.A304V 0.38 tolerated(0.08) benign(0.059) TCGA-B0-5712-01 2 238287851 238287851 A C COL6A3 Missense_Mutation p.F642C 0.29 probably_damaging(1) TCGA-B0-5712-01 2 239353298 239353298 G A ASB1 Silent p.S270S 0.32 TCGA-B0-5712-01 2 241706374 241706374 C A KIF1A Nonsense_Mutation p.E548* 0.44 TCGA-B0-5712-01 2 42924943 42924943 A T MTA3 Missense_Mutation p.S332C 0.38 deleterious(0.05) probably_damaging(0.967) TCGA-B0-5712-01 2 43010461 43010461 C T HAAO Missense_Mutation p.G115R 0.12 deleterious(0.03) possibly_damaging(0.65) TCGA-B0-5712-01 3 133307009 133307009 T C CDV3 3'UTR 0.62 TCGA-B0-5712-01 3 190127895 190127895 G A CLDN16 3'UTR 0.73 TCGA-B0-5712-01 3 195794940 195794941 - ATT TFRC Nonsense_Mutation p.K287_F288ins* 0.65 TCGA-B0-5712-01 3 52651547 52651548 TC - PBRM1 Frame_Shift_Del p.N517Hfs*15 0.40 TCGA-B0-5712-01 3 64084725 64084725 T C PRICKLE2 3'UTR 0.60 TCGA-B0-5712-01 4 25125529 25125529 G T SEPSECS 3'UTR 0.31 TCGA-B0-5712-01 4 74719055 74719055 A C PF4V1 5'UTR 0.24 TCGA-B0-5712-01 5 138707769 138707769 A - SLC23A1 Frame_Shift_Del p.S579Qfs*27 0.35 TCGA-B0-5712-01 5 140896574 140896574 G T DIAPH1 Silent p.A1221A 0.36 TCGA-B0-5712-01 5 150071443 150071443 C A RBM22 Missense_Mutation p.G378V 0.43 tolerated(0.39) benign(0.199) TCGA-B0-5712-01 5 175811208 175811208 T C NOP16 Missense_Mutation p.Q157R 0.52 deleterious_low_confidence(0) benign(0.069) TCGA-B0-5712-01 5 179291015 179291015 T - TBC1D9B Frame_Shift_Del p.E1063Rfs*146 0.34 TCGA-B0-5712-01 5 32101043 32101043 T C PDZD2 Intron 0.21 TCGA-B0-5712-01 5 40692598 40692598 T G PTGER4 3'UTR 0.17 TCGA-B0-5712-01 5 41186209 41186209 T G C6 Missense_Mutation p.Y230S 0.42 tolerated(0.05) benign(0.17) TCGA-B0-5712-01 5 56184111 56184111 T G MAP3K1 Missense_Mutation p.I1439S 0.47 deleterious(0) possibly_damaging(0.678) TCGA-B0-5712-01 5 80381640 80381640 C - RASGRF2 Frame_Shift_Del p.T394Nfs*26 0.25 TCGA-B0-5712-01 5 94207041 94207041 T - MCTP1 Frame_Shift_Del p.V707Lfs*18 0.22 TCGA-B0-5712-01 6 137322979 137322979 G - IL20RA Frame_Shift_Del p.L460Wfs*114 0.30 TCGA-B0-5712-01 6 152557402 152557402 A C SYNE1 Missense_Mutation p.L6746V 0.35 possibly_damaging(0.809) TCGA-B0-5712-01 6 29141716 29141716 C A OR2J2 Missense_Mutation p.L102I 0.10 deleterious(0) probably_damaging(0.976) TCGA-B0-5712-01 6 43316104 43316104 G A ZNF318 Silent p.S1010S 0.30 TCGA-B0-5712-01 6 56473841 56473841 C G DST Intron 0.28 TCGA-B0-5712-01 6 70071056 70071056 C A BAI3 Silent p.V1297V 0.19 TCGA-B0-5712-01 7 100352939 100352939 A - ZAN Frame_Shift_Del p.E1072Gfs*125 0.27 TCGA-B0-5712-01 7 1009028 1009028 C T COX19 Missense_Mutation p.E87K 0.30 tolerated(0.26) benign(0.004) TCGA-B0-5712-01 7 101265479 101265479 G T MYL10 Silent p.G117G 0.35 TCGA-B0-5712-01 7 107207504 107207504 A T DUS4L 5'UTR 0.28 TCGA-B0-5712-01 7 139611072 139611072 G A TBXAS1 Missense_Mutation p.M96I 0.38 tolerated(0.1) benign(0.297) TCGA-B0-5712-01 7 158705779 158705779 T A WDR60 Missense_Mutation p.V565E 0.29 deleterious(0) possibly_damaging(0.804) TCGA-B0-5712-01 7 91722412 91722412 A G AKAP9 Silent p.E3120E 0.33 TCGA-B0-5712-01 7 94029506 94029506 A T COL1A2 Splice_Site p.X45_splice 0.31 TCGA-B0-5712-01 8 125072967 125072967 C G FER1L6 Intron 0.28 TCGA-B0-5712-01 8 57025710 57025710 G A MOS Missense_Mutation p.P278S 0.07 deleterious(0) probably_damaging(1) TCGA-B0-5712-01 9 135535153 135535153 C G DDX31 Missense_Mutation p.S261T 0.29 tolerated(0.62) benign(0.035) TCGA-B0-5712-01 9 137007499 137007499 T G WDR5 Missense_Mutation p.F133L 0.28 deleterious(0.01) possibly_damaging(0.682) TCGA-B0-5712-01 X 109468262 109468262 C T AMMECR1 Intron 0.26 TCGA-B0-5712-01 X 117043342 117043342 T C KLHL13 Missense_Mutation p.K433E 0.44 tolerated(0.07) possibly_damaging(0.804) TCGA-B0-5712-01 X 122748006 122748007 - TGGACAGTGG THOC2 Frame_Shift_Ins p.K1449Tfs*6 0.10 TCGA-B0-5712-01 X 123200270 123200280 AAAGCAGCTCT - STAG2 Frame_Shift_Del p.E750Dfs*31 0.21 TCGA-B0-5712-01 X 123517773 123517773 G T TENM1 Missense_Mutation p.S2336R 0.37 deleterious(0.01) benign(0.07) TCGA-B0-5712-01 X 139866077 139866077 C T CDR1 Missense_Mutation p.R152K 0.34 tolerated(0.33) benign(0.14) TCGA-B0-5712-01 X 17086536 17086537 - A REPS2 Frame_Shift_Ins p.D409Rfs*4 0.13 TCGA-B0-5712-01 X 21519646 21519646 A C CNKSR2 Silent p.A250A 0.26 TCGA-B0-5712-01 X 30738149 30738149 G A GK Silent p.Q385Q 0.05 TCGA-B0-5712-01 X 49089797 49089797 C T CACNA1F 5'UTR 0.24 TCGA-B0-5712-01 X 53563622 53563622 T C HUWE1 Missense_Mutation p.I4048M 0.15 unknown(0) TCGA-B0-5712-01 X 68060246 68060246 A T EFNB1 Nonsense_Mutation p.K264* 0.27 TCGA-B0-5712-01 X 71427585 71427585 T C ERCC6L Silent p.R344R 0.21 TCGA-B0-5713-01 10 105922142 105922142 A C WDR96 Missense_Mutation p.I1089S 0.29 deleterious(0) benign(0.104) TCGA-B0-5713-01 10 124183777 124183781 AAGGT - PLEKHA1 Splice_Site p.X249_splice 0.15 TCGA-B0-5713-01 10 74619047 74619047 T G MCU Missense_Mutation p.F111L 0.28 tolerated(0.15) benign(0.233) TCGA-B0-5713-01 11 114314631 114314631 T C REXO2 Silent p.D95D 0.28 TCGA-B0-5713-01 11 43340203 43340203 A G API5 Missense_Mutation p.Y28C 0.07 deleterious(0) probably_damaging(0.999) TCGA-B0-5713-01 11 46666953 46666953 C A ATG13 Missense_Mutation p.P45Q 0.26 deleterious(0.02) probably_damaging(0.991) TCGA-B0-5713-01 11 621602 621602 T C CDHR5 Missense_Mutation p.K156R 0.25 tolerated(0.09) benign(0.099) TCGA-B0-5713-01 11 69631129 69631129 G A FGF3 Missense_Mutation p.R95W 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-B0-5713-01 12 104056757 104056757 C A STAB2 Missense_Mutation p.T668K 0.42 tolerated(0.26) benign(0.086) TCGA-B0-5713-01 12 104341195 104341195 A C HSP90B1 Missense_Mutation p.E790A 0.25 tolerated(0.17) unknown(0) TCGA-B0-5713-01 12 11339532 11339532 T G TAS2R42 Missense_Mutation p.E4D 0.33 tolerated(0.15) benign(0.284) TCGA-B0-5713-01 12 120635210 120635210 G - RPLP0 Frame_Shift_Del p.S236* 0.18 TCGA-B0-5713-01 12 131276349 131276349 A T STX2 3'UTR 0.38 TCGA-B0-5713-01 12 2027490 2027490 G - CACNA2D4 Frame_Shift_Del p.S51Rfs*9 0.35 TCGA-B0-5713-01 12 25149249 25149249 C G C12orf77 Missense_Mutation p.D10H 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.815) TCGA-B0-5713-01 12 53670456 53670456 C T ESPL1 Silent p.L585L 0.07 TCGA-B0-5713-01 12 53685569 53685569 C T ESPL1 Silent p.L1872L 0.39 TCGA-B0-5713-01 12 95546724 95546724 C A FGD6 Nonsense_Mutation p.E878* 0.21 TCGA-B0-5713-01 13 100207857 100207857 T A TM9SF2 Missense_Mutation p.S570T 0.25 deleterious(0.01) probably_damaging(0.947) TCGA-B0-5713-01 13 101733910 101733910 C T NALCN Missense_Mutation p.V1285I 0.05 tolerated(0.12) benign(0.012) TCGA-B0-5713-01 13 92346002 92346002 T C GPC5 Missense_Mutation p.I296T 0.31 deleterious(0) probably_damaging(0.928) TCGA-B0-5713-01 14 23239464 23239464 C G OXA1L Missense_Mutation p.P276A 0.31 tolerated(0.52) benign(0.054) TCGA-B0-5713-01 14 24633841 24633841 C G IRF9 Missense_Mutation p.T223S 0.20 tolerated(0.53) probably_damaging(0.999) TCGA-B0-5713-01 14 24687305 24687305 G C NEDD8 Intron 0.23 TCGA-B0-5713-01 14 62462755 62462755 G A SYT16 Silent p.A6A 0.34 TCGA-B0-5713-01 14 64699828 64699828 T G ESR2 3'UTR 0.30 TCGA-B0-5713-01 14 72055449 72055449 A T SIPA1L1 Missense_Mutation p.K287I 0.29 deleterious(0) probably_damaging(0.994) TCGA-B0-5713-01 14 74205375 74205375 A T ELMSAN1 Missense_Mutation p.L446Q 0.27 tolerated(0.13) benign(0.352) TCGA-B0-5713-01 14 74350885 74350885 T A PTGR2 3'UTR 0.10 TCGA-B0-5713-01 14 94511094 94511094 G A OTUB2 Missense_Mutation p.E156K 0.22 deleterious(0.02) benign(0.224) TCGA-B0-5713-01 14 94964436 94964436 T A SERPINA12 Missense_Mutation p.Q100L 0.23 deleterious(0.04) benign(0.259) TCGA-B0-5713-01 14 99641322 99641322 C T BCL11B Silent p.K617K 0.54 TCGA-B0-5713-01 15 65273294 65273294 G T SPG21 Missense_Mutation p.P45T 0.20 deleterious(0) probably_damaging(0.972) TCGA-B0-5713-01 15 69238350 69238350 A - SPESP1 Frame_Shift_Del p.R160Efs*25 0.20 TCGA-B0-5713-01 15 73616205 73616205 C A HCN4 Missense_Mutation p.Q743H 0.24 deleterious(0) unknown(0) TCGA-B0-5713-01 15 76075348 76075348 G T RN7SL319P 5'Flank 0.28 TCGA-B0-5713-01 16 19475156 19475156 A G TMC5 Missense_Mutation p.Q432R 0.37 tolerated(0.19) probably_damaging(0.954) TCGA-B0-5713-01 16 30505581 30505581 C T ITGAL Missense_Mutation p.A421V 0.21 tolerated(0.31) benign(0.082) TCGA-B0-5713-01 16 4408461 4408461 C T CORO7 Silent p.T788T 0.21 TCGA-B0-5713-01 16 476674 476674 G T RAB11FIP3 Missense_Mutation p.R223L 0.21 tolerated(0.05) probably_damaging(0.98) TCGA-B0-5713-01 16 67694268 67694269 - G ACD Frame_Shift_Ins p.R39Sfs*81 0.35 TCGA-B0-5713-01 16 68598499 68598499 T C ZFP90 Silent p.H603H 0.25 TCGA-B0-5713-01 16 83949048 83949048 A G MLYCD Missense_Mutation p.Q479R 0.09 deleterious(0.03) benign(0.179) TCGA-B0-5713-01 17 171101 171102 - CT RPH3AL Frame_Shift_Ins p.A62Gfs*23 0.28 TCGA-B0-5713-01 17 42953390 42953390 C A EFTUD2 Missense_Mutation p.D261Y 0.28 deleterious(0) probably_damaging(1) TCGA-B0-5713-01 17 43332848 43332848 G T SPATA32 Missense_Mutation p.P234Q 0.30 tolerated(0.26) probably_damaging(0.988) TCGA-B0-5713-01 17 62512942 62512942 G C CEP95 Missense_Mutation p.G157R 0.17 tolerated(0.46) benign(0.203) TCGA-B0-5713-01 17 76535832 76535832 T C DNAH17 Missense_Mutation p.N888S 0.11 benign(0.2) TCGA-B0-5713-01 17 78196524 78196524 T G SLC26A11 Missense_Mutation p.L102R 0.23 deleterious(0) probably_damaging(0.976) TCGA-B0-5713-01 18 29511372 29511372 T A TRAPPC8 Missense_Mutation p.D91V 0.27 deleterious(0) possibly_damaging(0.588) TCGA-B0-5713-01 18 55399034 55399034 A G ATP8B1 Silent p.S2S 0.27 TCGA-B0-5713-01 19 10206762 10206762 G C ANGPTL6 Missense_Mutation p.L160V 0.24 deleterious(0) probably_damaging(0.996) TCGA-B0-5713-01 19 13263983 13263983 T A IER2 5'UTR 0.38 TCGA-B0-5713-01 19 1625673 1625673 C T TCF3 Missense_Mutation p.S134N 0.40 tolerated(0.1) benign(0.018) TCGA-B0-5713-01 19 3831667 3831667 C T ZFR2 Missense_Mutation p.A197T 0.21 tolerated(1) benign(0.005) TCGA-B0-5713-01 19 44681535 44681535 A G ZNF226 Missense_Mutation p.Y707C 0.04 tolerated(0.05) benign(0.022) TCGA-B0-5713-01 19 51462529 51462529 C T KLK6 Missense_Mutation p.G209D 0.07 deleterious(0) probably_damaging(1) TCGA-B0-5713-01 19 53958187 53958187 A - ZNF761 RNA 0.23 TCGA-B0-5713-01 19 7614966 7614966 C T PNPLA6 Silent p.T603T 0.24 TCGA-B0-5713-01 1 109969033 109969033 C G PSMA5 5'Flank 0.32 TCGA-B0-5713-01 1 155747557 155747557 C A GON4L Missense_Mutation p.E649D 0.29 deleterious(0.04) probably_damaging(0.979) TCGA-B0-5713-01 1 197886867 197886867 C G LHX9 5'UTR 0.37 TCGA-B0-5713-01 1 203024644 203024644 A - PPFIA4 Frame_Shift_Del p.N133Tfs*2 0.24 TCGA-B0-5713-01 1 203316461 203316461 G T FMOD Missense_Mutation p.T313N 0.22 tolerated(0.22) probably_damaging(0.928) TCGA-B0-5713-01 1 2333758 2333758 A G RER1 Missense_Mutation p.I160V 0.26 tolerated(0.09) benign(0.158) TCGA-B0-5713-01 1 27105569 27105570 TC - ARID1A Frame_Shift_Del p.F1728Wfs*7 0.23 TCGA-B0-5713-01 1 76262748 76262748 T C MSH4 Silent p.P26P 0.24 TCGA-B0-5713-01 1 99767414 99767414 T C LPPR4 Silent p.Y309Y 0.07 TCGA-B0-5713-01 20 2442418 2442418 C T SNRPB Missense_Mutation p.R236H 0.30 tolerated_low_confidence(0.36) unknown(0) TCGA-B0-5713-01 20 4680528 4680528 A G PRNP Missense_Mutation p.E221G 0.30 tolerated(0.07) possibly_damaging(0.819) TCGA-B0-5713-01 20 52561451 52561451 G A BCAS1 3'UTR 0.29 TCGA-B0-5713-01 22 24125737 24125737 G A AP000349.1 Missense_Mutation p.P137S 0.07 unknown(0) TCGA-B0-5713-01 22 41513594 41513594 C A EP300 Missense_Mutation p.N166K 0.08 unknown(0) TCGA-B0-5713-01 2 131116984 131116984 C T PTPN18 Silent p.S98S 0.19 TCGA-B0-5713-01 2 152512437 152512437 G A NEB Missense_Mutation p.A2199V 0.04 benign(0.146) TCGA-B0-5713-01 2 17699551 17699551 G T RAD51AP2 Silent p.V44V 0.28 TCGA-B0-5713-01 2 216965265 216965265 A T TMEM169 Nonstop_Mutation p.*298Yext*18 0.32 TCGA-B0-5713-01 2 27656879 27656879 T C NRBP1 Silent p.D119D 0.26 TCGA-B0-5713-01 2 32481863 32481863 C T NLRC4 5'UTR 0.18 TCGA-B0-5713-01 3 10191469 10191469 A G VHL Splice_Site p.X155_splice 0.52 TCGA-B0-5713-01 3 120369637 120369637 T C HGD Missense_Mutation p.T140A 0.22 tolerated(0.86) benign(0) TCGA-B0-5713-01 3 123044195 123044195 G T ADCY5 Missense_Mutation p.Q688K 0.22 tolerated(1) benign(0.01) TCGA-B0-5713-01 3 133306950 133306950 C T CDV3 3'UTR 0.18 TCGA-B0-5713-01 3 133329915 133329915 C A TOPBP1 Missense_Mutation p.R1369I 0.08 deleterious(0) benign(0.004) TCGA-B0-5713-01 3 171377081 171377081 A T PLD1 Missense_Mutation p.F784Y 0.26 deleterious(0.01) possibly_damaging(0.858) TCGA-B0-5713-01 3 186460113 186460114 TT - KNG1 Frame_Shift_Del p.S644Lfs*3 0.20 TCGA-B0-5713-01 3 187447399 187447399 A T BCL6 Missense_Mutation p.I265N 0.29 tolerated(0.56) benign(0.013) TCGA-B0-5713-01 3 51990645 51990645 T A GPR62 Missense_Mutation p.L326H 0.47 deleterious(0) possibly_damaging(0.575) TCGA-B0-5713-01 3 52678783 52678784 - T PBRM1 Frame_Shift_Ins p.I279Nfs*8 0.37 TCGA-B0-5713-01 3 67058722 67058722 G C KBTBD8 Missense_Mutation p.E573D 0.18 tolerated(0.57) possibly_damaging(0.497) TCGA-B0-5713-01 3 88202613 88202614 TT A C3orf38 Frame_Shift_Del p.F123Ifs*5 0.15 TCGA-B0-5713-01 4 166986847 166986847 G C TLL1 Missense_Mutation p.D674H 0.27 deleterious(0) probably_damaging(0.999) TCGA-B0-5713-01 4 187549319 187549319 G C FAT1 Missense_Mutation p.S1600W 0.37 probably_damaging(0.993) TCGA-B0-5713-01 4 83838698 83838698 G A THAP9 Missense_Mutation p.V445M 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-B0-5713-01 4 87023072 87023072 A G MAPK10 Missense_Mutation p.L180P 0.28 deleterious(0) probably_damaging(1) TCGA-B0-5713-01 5 101597654 101597654 A G SLCO4C1 Missense_Mutation p.L328S 0.43 deleterious(0) possibly_damaging(0.877) TCGA-B0-5713-01 5 149771631 149771632 - C TCOF1 Frame_Shift_Ins p.K1138Qfs*4 0.19 TCGA-B0-5713-01 5 158601127 158601128 - GGACATT RNF145 Frame_Shift_Ins p.L251Nfs*39 0.17 TCGA-B0-5713-01 5 170336745 170336745 G T RANBP17 Silent p.V190V 0.23 TCGA-B0-5713-01 5 176728925 176728925 C T RAB24 Splice_Site p.X183_splice 0.30 TCGA-B0-5713-01 5 179050064 179050064 G A HNRNPH1 Missense_Mutation p.A24V 0.34 tolerated(0.61) benign(0.015) TCGA-B0-5713-01 5 32088026 32088026 C - PDZD2 Frame_Shift_Del p.A1493Pfs*12 0.17 TCGA-B0-5713-01 6 114178975 114178975 G C MARCKS Missense_Mutation p.R18S 0.21 deleterious(0.01) benign(0.018) TCGA-B0-5713-01 6 20490696 20490697 - T E2F3 3'UTR 0.27 TCGA-B0-5713-01 6 43017376 43017376 C T CUL7 Missense_Mutation p.E616K 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-B0-5713-01 6 43276136 43276136 T C CRIP3 Missense_Mutation p.S19G 0.30 tolerated(0.06) benign(0.304) TCGA-B0-5713-01 6 5109597 5109597 A C LYRM4 3'UTR 0.32 TCGA-B0-5713-01 6 52268836 52268836 T A PAQR8 Nonsense_Mutation p.C275* 0.35 TCGA-B0-5713-01 6 54735119 54735119 G C FAM83B Missense_Mutation p.K25N 0.32 deleterious(0) probably_damaging(0.999) TCGA-B0-5713-01 6 90039627 90039627 G T UBE2J1 Missense_Mutation p.P243H 0.28 deleterious(0) benign(0.001) TCGA-B0-5713-01 7 148769510 148769510 A T ZNF786 Silent p.P118P 0.32 TCGA-B0-5713-01 7 2473500 2473500 A - CHST12 Frame_Shift_Del p.N410Tfs*19 0.16 TCGA-B0-5713-01 7 552066 552066 G C PDGFA Missense_Mutation p.L63V 0.07 tolerated(0.09) benign(0.042) TCGA-B0-5713-01 7 55249116 55249116 A G EGFR Missense_Mutation p.H805R 0.28 deleterious(0) probably_damaging(0.911) TCGA-B0-5713-01 7 73535222 73535222 A C LIMK1 Missense_Mutation p.I542L 0.07 tolerated(0.06) possibly_damaging(0.671) TCGA-B0-5713-01 7 96747042 96747049 GGGCGGCA CC ACN9 In_Frame_Del p.G3_H5delinsP 0.20 TCGA-B0-5713-01 8 105503616 105503616 G A LRP12 Missense_Mutation p.S622L 0.26 tolerated(0.1) probably_damaging(0.996) TCGA-B0-5713-01 8 144645177 144645177 T G GSDMD 3'UTR 0.36 TCGA-B0-5713-01 8 52370154 52370154 T C PXDNL Missense_Mutation p.R296G 0.38 tolerated(0.16) possibly_damaging(0.497) TCGA-B0-5713-01 8 59506790 59506790 C G NSMAF Splice_Site p.X682_splice 0.38 TCGA-B0-5713-01 8 67970384 67970384 A G COPS5 Silent p.L147L 0.51 TCGA-B0-5713-01 8 86022019 86022019 G T LRRCC1 Missense_Mutation p.L98F 0.50 deleterious(0.02) benign(0.078) TCGA-B0-5713-01 8 9588524 9588524 A C TNKS Missense_Mutation p.D709A 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-B0-5713-01 9 113170849 113170849 A T SVEP1 Missense_Mutation p.V2344D 0.25 possibly_damaging(0.908) TCGA-B0-5713-01 9 113496565 113496565 C A MUSK Missense_Mutation p.H221Q 0.05 tolerated(0.56) benign(0.004) TCGA-B0-5713-01 9 130579364 130579364 C - ENG Intron 0.23 TCGA-B0-5713-01 9 33470170 33470170 A G NOL6 Missense_Mutation p.L133P 0.25 deleterious(0) probably_damaging(0.935) TCGA-B0-5713-01 9 35684288 35684288 C T TPM2 Missense_Mutation p.E243K 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-B0-5713-01 X 138827926 138827926 C T ATP11C Silent p.G976G 0.26 TCGA-B0-5713-01 X 152132417 152132417 A T ZNF185 Missense_Mutation p.T579S 0.32 tolerated(0.19) benign(0.202) TCGA-B0-5713-01 X 20028912 20028912 C T MAP7D2 3'UTR 0.04 TCGA-B0-5713-01 X 27840420 27840420 G A MAGEB10 Missense_Mutation p.G333S 0.17 tolerated(1) unknown(0) TCGA-B0-5713-01 X 48979947 48979947 A T GPKOW Silent p.S42S 0.32 TCGA-B0-5713-01 X 76939124 76939124 C G ATRX Missense_Mutation p.V542L 0.10 benign(0.005) TCGA-B0-5812-01 10 104142165 104142165 C T GBF1 3'UTR 0.18 TCGA-B0-5812-01 10 134147149 134147158 GGCATCATCT TGCA LRRC27 In_Frame_Del p.G41_F44delinsCI 0.11 TCGA-B0-5812-01 10 18250701 18250701 G A SLC39A12 Silent p.R151R 0.12 TCGA-B0-5812-01 11 118925901 118925901 T A HYOU1 Missense_Mutation p.S139C 0.19 deleterious(0.02) possibly_damaging(0.755) TCGA-B0-5812-01 11 47306055 47306055 G A MADD Missense_Mutation p.R699H 0.13 tolerated_low_confidence(0.14) benign(0.008) TCGA-B0-5812-01 11 83243801 83243801 A T DLG2 Missense_Mutation p.L715M 0.05 tolerated(0.05) probably_damaging(0.997) TCGA-B0-5812-01 11 88330476 88330476 T G GRM5 Missense_Mutation p.D480A 0.18 tolerated(0.11) benign(0.004) TCGA-B0-5812-01 12 105282811 105282811 C G SLC41A2 Missense_Mutation p.G294R 0.21 deleterious(0.04) possibly_damaging(0.712) TCGA-B0-5812-01 12 121132708 121132708 G A MLEC Missense_Mutation p.D166N 0.21 deleterious(0.02) probably_damaging(0.975) TCGA-B0-5812-01 12 124379213 124379213 G T DNAH10 Missense_Mutation p.D2957Y 0.07 probably_damaging(1) TCGA-B0-5812-01 13 111932908 111932908 G T ARHGEF7 Missense_Mutation p.V558L 0.13 deleterious(0) benign(0.02) TCGA-B0-5812-01 13 48517474 48517474 T C SUCLA2 3'UTR 0.25 TCGA-B0-5812-01 13 78472463 78472463 A C EDNRB Missense_Mutation p.L491V 0.21 deleterious(0.02) probably_damaging(0.945) TCGA-B0-5812-01 14 100375765 100375765 C A EML1 Nonsense_Mutation p.Y415* 0.15 TCGA-B0-5812-01 15 40758186 40758186 A C BAHD1 Missense_Mutation p.K734Q 0.25 tolerated(0.05) probably_damaging(0.974) TCGA-B0-5812-01 15 43533161 43533161 C A TGM5 Missense_Mutation p.R297L 0.16 deleterious(0) probably_damaging(0.986) TCGA-B0-5812-01 17 37369246 37369246 A C STAC2 Splice_Site p.X377_splice 0.21 TCGA-B0-5812-01 17 73096901 73096901 A T SLC16A5 Silent p.P381P 0.17 TCGA-B0-5812-01 19 11138623 11138623 G T SMARCA4 Missense_Mutation p.D1127Y 0.07 probably_damaging(0.982) TCGA-B0-5812-01 19 47422608 47422608 G A ARHGAP35 Missense_Mutation p.V226M 0.08 deleterious(0) probably_damaging(0.971) TCGA-B0-5812-01 19 53208387 53208387 G A ZNF611 Missense_Mutation p.R641C 0.03 deleterious(0.02) probably_damaging(0.93) TCGA-B0-5812-01 19 53383839 53383839 G - ZNF320 3'UTR 0.17 TCGA-B0-5812-01 1 10163061 10163061 A C UBE4B Missense_Mutation p.K164T 0.18 deleterious(0) unknown(0) TCGA-B0-5812-01 1 206649530 206649530 G A IKBKE Missense_Mutation p.G122D 0.08 deleterious(0) probably_damaging(0.99) TCGA-B0-5812-01 1 229643913 229643913 C G NUP133 Silent p.T28T 0.44 TCGA-B0-5812-01 1 82456349 82456349 T C LPHN2 Silent p.A1244A 0.05 TCGA-B0-5812-01 20 3146916 3146916 T A LZTS3 Missense_Mutation p.N184Y 0.22 deleterious(0.04) benign(0.272) TCGA-B0-5812-01 21 22664427 22664427 G C NCAM2 Missense_Mutation p.R162P 0.15 deleterious(0) probably_damaging(0.986) TCGA-B0-5812-01 21 28296852 28296852 G T ADAMTS5 Missense_Mutation p.F771L 0.21 deleterious(0.01) benign(0.164) TCGA-B0-5812-01 22 31010337 31010337 G A TCN2 Silent p.G143G 0.07 TCGA-B0-5812-01 22 31018990 31018990 T A TCN2 Nonsense_Mutation p.L381* 0.22 TCGA-B0-5812-01 2 133539879 133539879 G T NCKAP5 Missense_Mutation p.P1502H 0.29 deleterious(0.02) probably_damaging(0.929) TCGA-B0-5812-01 2 141812722 141812722 A T LRP1B Silent p.T505T 0.10 TCGA-B0-5812-01 2 175614898 175614898 C T CHRNA1 Splice_Site p.X285_splice 0.26 TCGA-B0-5812-01 2 28635380 28635380 C A FOSL2 3'UTR 0.18 TCGA-B0-5812-01 2 98804531 98804531 A G VWA3B Missense_Mutation p.K469E 0.27 tolerated(0.13) benign(0.186) TCGA-B0-5812-01 3 10188290 10188290 C T VHL Nonsense_Mutation p.Q145* 0.25 TCGA-B0-5812-01 3 173998403 173998403 T G NLGN1 Silent p.V594V 0.16 TCGA-B0-5812-01 3 182897463 182897463 C T MCF2L2 Silent p.Q1041Q 0.10 TCGA-B0-5812-01 3 52712569 52712578 CTTATAGTCT - PBRM1 Frame_Shift_Del p.D59Mfs*33 0.23 TCGA-B0-5812-01 3 75472015 75472015 T G FAM86DP RNA 0.32 TCGA-B0-5812-01 4 54265975 54265975 T C FIP1L1 Missense_Mutation p.S262P 0.21 tolerated(0.23) benign(0.002) TCGA-B0-5812-01 5 112170717 112170717 G A APC Missense_Mutation p.D605N 0.15 benign(0.196) TCGA-B0-5812-01 5 122722335 122722335 G C CEP120 Missense_Mutation p.A486G 0.15 deleterious(0.03) possibly_damaging(0.474) TCGA-B0-5812-01 5 122722336 122722336 C A CEP120 Missense_Mutation p.A486S 0.15 tolerated(0.27) benign(0.175) TCGA-B0-5812-01 5 37120329 37120329 G C C5orf42 Missense_Mutation p.P3046R 0.20 deleterious(0.02) benign(0.386) TCGA-B0-5812-01 5 70952601 70952601 G C MCCC2 Missense_Mutation p.D536H 0.02 deleterious_low_confidence(0.01) benign(0.35) TCGA-B0-5812-01 6 3227737 3227737 T C TUBB2B Missense_Mutation p.N14S 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.736) TCGA-B0-5812-01 6 40400076 40400076 G C LRFN2 Missense_Mutation p.D259E 0.19 tolerated(1) benign(0.006) TCGA-B0-5812-01 6 51656133 51656133 T C PKHD1 Missense_Mutation p.K2781E 0.24 tolerated(0.23) benign(0.068) TCGA-B0-5812-01 7 107605113 107605113 G A LAMB1 Nonsense_Mutation p.Q528* 0.17 TCGA-B0-5812-01 7 149486279 149486279 G A SSPO RNA 0.12 TCGA-B0-5812-01 7 77708312 77708312 G A MAGI2 Nonsense_Mutation p.R1220* 0.05 TCGA-B0-5812-01 8 104709441 104709441 G C RIMS2 Missense_Mutation p.D102H 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-B0-5812-01 8 16021600 16021600 G T MSR1 Missense_Mutation p.T264N 0.18 deleterious(0) probably_damaging(0.955) TCGA-B0-5812-01 8 623548 623548 G A ERICH1 Silent p.D268D 0.18 TCGA-B0-5812-01 9 104190767 104190770 TTTG - ALDOB Frame_Shift_Del p.N120Kfs*32 0.25 TCGA-B0-5812-01 9 133942552 133942552 C T LAMC3 Silent p.Y851Y 0.17 TCGA-B0-5812-01 9 139959180 139959180 A G SAPCD2 Silent p.I372I 0.40 TCGA-B2-3923-01 10 102586765 102586765 G T PAX2 Splice_Site p.X364_splice 0.08 TCGA-B2-3923-01 10 30749709 30749709 G T MAP3K8 Missense_Mutation p.A450S 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B2-3923-01 11 103153779 103153779 G C DYNC2H1 Missense_Mutation p.D3626H 0.07 benign(0.088) TCGA-B2-3923-01 11 6292569 6292569 C T CCKBR Silent p.Y380Y 0.23 TCGA-B2-3923-01 12 62708660 62708662 TGT - USP15 In_Frame_Del p.V148del 0.40 TCGA-B2-3923-01 13 48528324 48528324 G A SUCLA2 Missense_Mutation p.T353I 0.03 deleterious(0) probably_damaging(0.988) TCGA-B2-3923-01 14 77935516 77935516 G T AHSA1 Missense_Mutation p.R314L 0.23 tolerated(0.1) benign(0.076) TCGA-B2-3923-01 15 81637115 81637115 C T TMC3 Missense_Mutation p.V504I 0.08 deleterious(0.04) possibly_damaging(0.85) TCGA-B2-3923-01 16 81391531 81391531 C A GAN Nonsense_Mutation p.S323* 0.27 TCGA-B2-3923-01 17 45908870 45908870 G A MRPL10 5'Flank 0.25 TCGA-B2-3923-01 18 30092371 30092371 C T WBP11P1 RNA 0.35 TCGA-B2-3923-01 19 41709472 41709472 C T CYP2S1 Missense_Mutation p.A365V 0.14 deleterious(0.01) benign(0.188) TCGA-B2-3923-01 19 49669420 49669420 C A TRPM4 Missense_Mutation p.T72N 0.33 deleterious(0.01) possibly_damaging(0.76) TCGA-B2-3923-01 1 120438863 120438863 G A ADAM30 Missense_Mutation p.H33Y 0.65 tolerated(0.41) possibly_damaging(0.451) TCGA-B2-3923-01 1 228333524 228333524 G T GUK1 Intron 0.38 TCGA-B2-3923-01 20 43803637 43803637 C T PI3 Missense_Mutation p.T25M 0.06 tolerated(0.14) benign(0) TCGA-B2-3923-01 20 6060186 6060186 G A FERMT1 Missense_Mutation p.S586L 0.04 deleterious(0) benign(0.184) TCGA-B2-3923-01 21 37653832 37653832 T C DOPEY2 Missense_Mutation p.M2028T 0.37 deleterious(0) probably_damaging(0.997) TCGA-B2-3923-01 2 164466403 164466403 G A FIGN Nonsense_Mutation p.R647* 0.19 TCGA-B2-3923-01 3 14731559 14731559 C T C3orf20 Silent p.Y227Y 0.21 TCGA-B2-3923-01 3 25761622 25761622 C A NGLY1 Missense_Mutation p.G558W 0.11 deleterious(0) possibly_damaging(0.791) TCGA-B2-3923-01 3 44286220 44286220 G A TOPAZ1 Missense_Mutation p.G741E 0.04 tolerated(0.75) benign(0.02) TCGA-B2-3923-01 4 144457701 144457701 A G SMARCA5 Silent p.K455K 0.06 TCGA-B2-3923-01 5 108698654 108698654 A C PJA2 Missense_Mutation p.S513R 0.17 deleterious(0) probably_damaging(0.987) TCGA-B2-3923-01 5 138730787 138730787 G A PROB1 5'UTR 0.07 TCGA-B2-3923-01 7 123516948 123516948 C T HYAL4 Silent p.P395P 0.36 TCGA-B2-3923-01 7 130357610 130357610 G A TSGA13 Missense_Mutation p.S165L 0.42 tolerated(1) possibly_damaging(0.519) TCGA-B2-3923-01 8 9413576 9413576 A G TNKS Missense_Mutation p.T43A 0.06 tolerated_low_confidence(0.05) unknown(0) TCGA-B2-3923-01 9 112899854 112899854 T C PALM2-AKAP2 Missense_Mutation p.V677A 0.11 deleterious(0.02) benign(0.065) TCGA-B2-3923-01 9 19520958 19520960 CGG - SLC24A2 In_Frame_Del p.R557del 0.11 TCGA-B2-3923-01 9 97063149 97063149 C T ZNF169 Missense_Mutation p.R437W 0.05 tolerated(0.06) probably_damaging(0.979) TCGA-B2-3923-01 X 106397335 106397335 A C NUP62CL Missense_Mutation p.N112K 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-B2-3923-01 X 125299313 125299313 C T DCAF12L2 Missense_Mutation p.A199T 0.46 tolerated(0.21) benign(0.081) TCGA-B2-3923-01 X 30671493 30671493 T G GK 5'UTR 0.40 TCGA-B2-4098-01 10 101151315 101151315 G C CNNM1 3'UTR 0.21 TCGA-B2-4098-01 10 99211881 99211881 C T ZDHHC16 Missense_Mutation p.S93F 0.16 tolerated(0.08) possibly_damaging(0.533) TCGA-B2-4098-01 11 2154815 2154815 G A IGF2 Silent p.L136L 0.19 TCGA-B2-4098-01 11 22215007 22215007 C T ANO5 5'UTR 0.31 TCGA-B2-4098-01 11 33108666 33108666 C T CSTF3 Missense_Mutation p.A555T 0.21 tolerated(0.44) benign(0.005) TCGA-B2-4098-01 11 46401080 46401080 G A DGKZ Missense_Mutation p.V1067M 0.21 deleterious(0) probably_damaging(1) TCGA-B2-4098-01 11 62744178 62744178 A G SLC22A6 3'UTR 0.18 TCGA-B2-4098-01 11 62760889 62760889 G C SLC22A8 Intron 0.25 TCGA-B2-4098-01 11 65715544 65715544 C T TSGA10IP RNA 0.25 TCGA-B2-4098-01 12 102811512 102811512 C G IGF1 3'UTR 0.19 TCGA-B2-4098-01 12 120241113 120241113 A - CIT Frame_Shift_Del p.S398Hfs*7 0.19 TCGA-B2-4098-01 12 50190216 50190216 A C NCKAP5L Missense_Mutation p.L476R 0.31 deleterious(0) probably_damaging(1) TCGA-B2-4098-01 13 20978266 20978266 A G CRYL1 3'UTR 0.15 TCGA-B2-4098-01 13 27745784 27745784 G A USP12 5'UTR 0.19 TCGA-B2-4098-01 13 35770236 35770236 T - NBEA Frame_Shift_Del p.P1722Lfs*5 0.17 TCGA-B2-4098-01 14 68086727 68086727 C G ARG2 Silent p.L11L 0.25 TCGA-B2-4098-01 15 101109927 101109927 G T LINS Missense_Mutation p.P597H 0.21 tolerated(0.07) possibly_damaging(0.846) TCGA-B2-4098-01 15 42117430 42117430 A G MAPKBP1 Silent p.S1447S 0.14 TCGA-B2-4098-01 15 45428753 45428753 A G DUOX1 Missense_Mutation p.I318V 0.23 tolerated(0.2) benign(0.074) TCGA-B2-4098-01 15 55912369 55912369 T A PRTG Silent p.T1098T 0.20 TCGA-B2-4098-01 15 72642868 72642868 A C HEXA Missense_Mutation p.W266G 0.22 deleterious(0) probably_damaging(0.998) TCGA-B2-4098-01 15 85186743 85186743 A - WDR73 Frame_Shift_Del p.L366Cfs*37 0.20 TCGA-B2-4098-01 16 30198495 30198495 G A CORO1A Missense_Mutation p.R196H 0.10 deleterious(0) possibly_damaging(0.809) TCGA-B2-4098-01 16 30507854 30507854 C A ITGAL Missense_Mutation p.A600D 0.18 deleterious(0) possibly_damaging(0.676) TCGA-B2-4098-01 17 39316569 39316569 G T KRTAP4-4 Nonsense_Mutation p.Y125* 0.38 TCGA-B2-4098-01 17 56589825 56589825 C T MTMR4 Missense_Mutation p.G46S 0.16 deleterious(0) probably_damaging(1) TCGA-B2-4098-01 17 72209750 72209750 C T TTYH2 Silent p.Y8Y 0.15 TCGA-B2-4098-01 17 76451801 76451801 G A DNAH17 Silent p.Y3351Y 0.07 TCGA-B2-4098-01 17 8020117 8020117 G A ALOXE3 Missense_Mutation p.T242I 0.16 deleterious(0.04) benign(0.2) TCGA-B2-4098-01 18 6873513 6873513 T G ARHGAP28 Missense_Mutation p.F195V 0.24 deleterious(0.01) possibly_damaging(0.792) TCGA-B2-4098-01 19 45391485 45391486 - C PVRL2 Frame_Shift_Ins p.V490Rfs*8 0.23 TCGA-B2-4098-01 19 45996518 45996518 G A RTN2 Silent p.T311T 0.35 TCGA-B2-4098-01 1 109202538 109202538 A C HENMT1 5'UTR 0.27 TCGA-B2-4098-01 1 155640162 155640162 A T YY1AP1 Missense_Mutation p.L364Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-B2-4098-01 1 185094228 185094228 A - TRMT1L Frame_Shift_Del p.F536Sfs*24 0.18 TCGA-B2-4098-01 1 205592865 205592865 T C ELK4 Missense_Mutation p.K49R 0.23 deleterious(0) probably_damaging(0.999) TCGA-B2-4098-01 1 236647463 236647463 T - EDARADD 3'Flank 0.15 TCGA-B2-4098-01 1 248059095 248059095 G T OR2W3 Silent p.L69L 0.21 TCGA-B2-4098-01 20 10621809 10621809 G A JAG1 Silent p.I1000I 0.04 TCGA-B2-4098-01 22 25007058 25007058 A T GGT1 Nonsense_Mutation p.K4* 0.19 TCGA-B2-4098-01 22 32555121 32555121 G A C22orf42 Missense_Mutation p.H28Y 0.20 tolerated_low_confidence(0.85) benign(0.291) TCGA-B2-4098-01 22 39387382 39387382 C T APOBEC3B Missense_Mutation p.R257C 0.13 tolerated(1) benign(0) TCGA-B2-4098-01 22 42992339 42992339 G T POLDIP3 Silent p.S222S 0.18 TCGA-B2-4098-01 2 178098799 178098799 T G NFE2L2 Missense_Mutation p.E82D 0.19 deleterious(0) probably_damaging(0.999) TCGA-B2-4098-01 2 179484778 179484778 C T TTN Missense_Mutation p.D15456N 0.16 TCGA-B2-4098-01 2 191064624 191064624 C G C2orf88 Missense_Mutation p.P13R 0.21 deleterious(0) probably_damaging(0.966) TCGA-B2-4098-01 2 232263303 232263303 G C B3GNT7 Missense_Mutation p.K291N 0.11 deleterious(0.02) possibly_damaging(0.794) TCGA-B2-4098-01 2 239102922 239102922 C T ILKAP Missense_Mutation p.D58N 0.17 tolerated(0.29) benign(0.001) TCGA-B2-4098-01 2 26806745 26806745 A G CIB4 Missense_Mutation p.I117T 0.11 deleterious(0) probably_damaging(0.978) TCGA-B2-4098-01 2 65299148 65299148 T G CEP68 Silent p.T306T 0.13 TCGA-B2-4098-01 3 102157367 102157367 T C ZPLD1 Silent p.I28I 0.24 TCGA-B2-4098-01 3 124457035 124457035 G A UMPS Missense_Mutation p.E311K 0.15 deleterious(0) probably_damaging(0.999) TCGA-B2-4098-01 3 128350832 128350832 T A RPN1 Nonsense_Mutation p.R268* 0.18 TCGA-B2-4098-01 3 170110164 170110164 A C SKIL Missense_Mutation p.K672Q 0.21 tolerated(0.48) benign(0.292) TCGA-B2-4098-01 3 196388312 196388312 G A NRROS Missense_Mutation p.G600R 0.17 tolerated(0.59) benign(0.003) TCGA-B2-4098-01 3 33038793 33038793 G A GLB1 Missense_Mutation p.P593L 0.16 deleterious(0) probably_damaging(1) TCGA-B2-4098-01 4 158142838 158142838 C T GRIA2 Silent p.G36G 0.15 TCGA-B2-4098-01 4 186545056 186545067 CATGTCCCGGGG - SORBS2 In_Frame_Del p.P602_M605del 0.11 TCGA-B2-4098-01 4 83788377 83788377 A G SEC31A Silent p.D325D 0.05 TCGA-B2-4098-01 4 95199614 95199614 A G SMARCAD1 Missense_Mutation p.I708M 0.21 deleterious(0) probably_damaging(0.993) TCGA-B2-4098-01 5 115177762 115177762 A C AP3S1 Missense_Mutation p.N10H 0.18 deleterious(0.01) possibly_damaging(0.495) TCGA-B2-4098-01 5 149499609 149499609 G A PDGFRB Silent p.S888S 0.14 TCGA-B2-4098-01 5 154394675 154394675 G T KIF4B Missense_Mutation p.R419M 0.20 deleterious(0) possibly_damaging(0.806) TCGA-B2-4098-01 6 10529526 10529526 C T GCNT2 Silent p.L128L 0.30 TCGA-B2-4098-01 6 42931107 42931107 G A GNMT Silent p.V212V 0.24 TCGA-B2-4098-01 6 43491607 43491607 C T XPO5 Silent p.%3D 0.12 TCGA-B2-4098-01 7 100031142 100031142 T A MEPCE Missense_Mutation p.Y679N 0.16 deleterious(0.02) probably_damaging(0.959) TCGA-B2-4098-01 7 135098321 135098322 - TT CNOT4 Frame_Shift_Ins p.N202Rfs*47 0.19 TCGA-B2-4098-01 7 88962701 88962702 - A ZNF804B Frame_Shift_Ins p.A137Sfs*18 0.21 TCGA-B2-4098-01 8 110598354 110598354 G A SYBU Silent p.G155G 0.16 TCGA-B2-4098-01 8 56986629 56986629 G A RPS20 Silent p.S31S 0.16 TCGA-B2-4098-01 9 138713195 138713195 C T CAMSAP1 Silent p.P1104P 0.23 TCGA-B2-4098-01 9 84532917 84532917 C T SPATA31D5P RNA 0.15 TCGA-B2-4098-01 9 98774905 98774905 A T ERCC6L2 Missense_Mutation p.K330I 0.26 deleterious(0.02) possibly_damaging(0.885) TCGA-B2-4098-01 X 44949174 44949174 A - KDM6A Frame_Shift_Del p.A1246Pfs*19 0.25 TCGA-B2-4099-01 10 103542318 103542319 - A NPM3 Frame_Shift_Ins p.V81Cfs*10 0.33 TCGA-B2-4099-01 10 105752775 105752775 A - SLK Frame_Shift_Del p.V134* 0.24 TCGA-B2-4099-01 10 119805451 119805451 C T RAB11FIP2 Missense_Mutation p.G75E 0.36 tolerated(0.11) benign(0.137) TCGA-B2-4099-01 10 61414026 61414026 A T SLC16A9 Missense_Mutation p.L253H 0.34 tolerated(0.56) benign(0.02) TCGA-B2-4099-01 11 12376331 12376331 G T MICALCL Missense_Mutation p.M610I 0.34 tolerated(0.29) benign(0.055) TCGA-B2-4099-01 11 6024124 6024124 G A OR56A4 Silent p.P85P 0.10 TCGA-B2-4099-01 11 6585252 6585252 C T DNHD1 Silent p.C3394C 0.32 TCGA-B2-4099-01 12 104107496 104107496 G A STAB2 Missense_Mutation p.R1496Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-B2-4099-01 13 52857470 52857470 A G RP11-248G5.8 RNA 0.24 TCGA-B2-4099-01 14 64683102 64683102 C G SYNE2 Silent p.P6513P 0.25 TCGA-B2-4099-01 14 70839819 70839819 A T SYNJ2BP Missense_Mutation p.H109Q 0.27 tolerated(0.29) benign(0.078) TCGA-B2-4099-01 14 88983531 88983531 C T PTPN21 Silent p.K85K 0.30 TCGA-B2-4099-01 15 63569905 63569905 A G APH1B Missense_Mutation p.E28G 0.12 deleterious(0.01) possibly_damaging(0.595) TCGA-B2-4099-01 16 13329151 13329151 G A SHISA9 Missense_Mutation p.G387D 0.39 tolerated(0.87) benign(0.322) TCGA-B2-4099-01 16 27689189 27689189 G T KIAA0556 Missense_Mutation p.R227I 0.35 tolerated(0.34) benign(0.359) TCGA-B2-4099-01 16 67214015 67214015 C T KIAA0895L Missense_Mutation p.E167K 0.30 deleterious(0.03) benign(0.077) TCGA-B2-4099-01 16 67235520 67235520 G A ELMO3 Missense_Mutation p.R351Q 0.32 tolerated(0.2) benign(0.033) TCGA-B2-4099-01 16 70954535 70954535 T C HYDIN Missense_Mutation p.K2582E 0.08 benign(0.018) TCGA-B2-4099-01 17 10299727 10299727 G A MYH8 Nonsense_Mutation p.Q1525* 0.32 TCGA-B2-4099-01 17 1703754 1703754 A - SMYD4 Frame_Shift_Del p.C312Afs*41 0.34 TCGA-B2-4099-01 17 58137396 58137396 G C HEATR6 Missense_Mutation p.S493C 0.25 deleterious(0.02) benign(0.037) TCGA-B2-4099-01 17 72345372 72345372 G T KIF19 Missense_Mutation p.S366I 0.27 deleterious(0) benign(0.364) TCGA-B2-4099-01 18 8825236 8825236 C T SOGA2 Missense_Mutation p.P1243L 0.40 deleterious(0.01) benign(0.096) TCGA-B2-4099-01 19 12637738 12637739 - AA ZNF564 Frame_Shift_Ins p.C395Ffs*47 0.20 TCGA-B2-4099-01 19 33077874 33077874 G T PDCD5 Intron 0.27 TCGA-B2-4099-01 19 37854193 37854193 G A HKR1 Missense_Mutation p.C499Y 0.32 deleterious(0.02) probably_damaging(1) TCGA-B2-4099-01 19 44740521 44740521 T C ZNF227 Silent p.G646G 0.14 TCGA-B2-4099-01 19 48258011 48258011 G A GLTSCR2 Missense_Mutation p.D306N 0.28 deleterious(0.04) benign(0.259) TCGA-B2-4099-01 19 50060397 50060397 C G NOSIP Missense_Mutation p.S123T 0.31 tolerated(0.21) benign(0.17) TCGA-B2-4099-01 19 51585845 51585845 T G KLK14 Missense_Mutation p.Q25H 0.16 tolerated(0.22) benign(0.005) TCGA-B2-4099-01 19 54682431 54682431 C A MBOAT7 Intron 0.55 TCGA-B2-4099-01 19 54742661 54742661 A T LILRA6 3'UTR 0.25 TCGA-B2-4099-01 19 6183057 6183057 A C ACSBG2 Missense_Mutation p.N366H 0.31 tolerated(0.12) possibly_damaging(0.747) TCGA-B2-4099-01 19 6467892 6467892 C T DENND1C Missense_Mutation p.E677K 0.05 deleterious_low_confidence(0.01) benign(0.058) TCGA-B2-4099-01 1 150939585 150939585 T C CERS2 Missense_Mutation p.M236V 0.38 deleterious(0) benign(0.332) TCGA-B2-4099-01 1 20657460 20657460 A G VWA5B1 Missense_Mutation p.E519G 0.10 deleterious(0) probably_damaging(0.916) TCGA-B2-4099-01 1 22417987 22417987 A T CDC42 Missense_Mutation p.S185C 0.21 deleterious(0.01) benign(0.216) TCGA-B2-4099-01 1 23222907 23222907 A G EPHB2 Silent p.R568R 0.08 TCGA-B2-4099-01 1 237895427 237895427 C A RYR2 Silent p.R3673R 0.35 TCGA-B2-4099-01 1 244218338 244218338 G T ZBTB18 Missense_Mutation p.C421F 0.33 deleterious(0) probably_damaging(0.952) TCGA-B2-4099-01 1 246810555 246810555 T - CNST Frame_Shift_Del p.S352Rfs*2 0.29 TCGA-B2-4099-01 1 44128741 44128741 T C KDM4A Silent p.F202F 0.26 TCGA-B2-4099-01 1 46156752 46156752 C T TMEM69 Silent p.F4F 0.31 TCGA-B2-4099-01 1 70502282 70502282 G C LRRC7 Missense_Mutation p.V717L 0.03 tolerated_low_confidence(0.14) benign(0.139) TCGA-B2-4099-01 1 89890132 89890132 G A GBP1P1 Intron 0.38 TCGA-B2-4099-01 20 13280044 13280044 T C ISM1 Missense_Mutation p.C445R 0.09 deleterious(0) probably_damaging(1) TCGA-B2-4099-01 20 30064350 30064350 C G REM1 Missense_Mutation p.S34R 0.38 tolerated(0.59) benign(0.025) TCGA-B2-4099-01 20 422492 422492 T C TBC1D20 Intron 0.35 TCGA-B2-4099-01 22 18300511 18300511 G A MICAL3 Missense_Mutation p.P1639L 0.31 benign(0.001) TCGA-B2-4099-01 22 32587083 32587083 G C RFPL2 Silent p.T271T 0.20 TCGA-B2-4099-01 2 1926721 1926721 C T MYT1L Missense_Mutation p.V274I 0.36 tolerated_low_confidence(0.05) benign(0.364) TCGA-B2-4099-01 2 196723250 196723250 G T DNAH7 Missense_Mutation p.A2672D 0.12 deleterious(0) probably_damaging(0.999) TCGA-B2-4099-01 2 201994484 201994484 T C CFLAR 5'UTR 0.33 TCGA-B2-4099-01 2 96803405 96803405 G A ASTL Silent p.C30C 0.12 TCGA-B2-4099-01 3 10191649 10191650 AA - VHL Missense_Mutation 0.41 TCGA-B2-4099-01 3 27451006 27451006 C T SLC4A7 Silent p.L585L 0.14 TCGA-B2-4099-01 3 50324620 50324620 A T LSMEM2 Missense_Mutation p.Q161L 0.48 deleterious(0.02) benign(0.218) TCGA-B2-4099-01 3 52620529 52620550 ACAGAGGCCACGCGAACCACAG - PBRM1 Frame_Shift_Del p.P1068Hfs*59 0.56 TCGA-B2-4099-01 4 120981284 120981284 C T MAD2L1 Missense_Mutation p.V203I 0.32 tolerated_low_confidence(0.51) benign(0.003) TCGA-B2-4099-01 4 148545115 148545115 G C TMEM184C Missense_Mutation p.R85T 0.22 deleterious(0) probably_damaging(0.99) TCGA-B2-4099-01 4 175898846 175898846 C T ADAM29 Nonsense_Mutation p.R724* 0.31 TCGA-B2-4099-01 4 71648807 71648807 G T RUFY3 Splice_Site p.X299_splice 0.34 TCGA-B2-4099-01 4 87696460 87696460 C T PTPN13 Missense_Mutation p.P1887L 0.32 tolerated(0.07) probably_damaging(1) TCGA-B2-4099-01 5 131008580 131008580 T G FNIP1 Missense_Mutation p.L519F 0.17 deleterious(0) possibly_damaging(0.9) TCGA-B2-4099-01 5 135379760 135379760 G A TGFBI Missense_Mutation p.E83K 0.23 deleterious(0) probably_damaging(0.979) TCGA-B2-4099-01 5 140532190 140532190 C A PCDHB6 Silent p.T784T 0.20 TCGA-B2-4099-01 5 149403938 149403938 T C HMGXB3 Silent p.N385N 0.47 TCGA-B2-4099-01 5 176665505 176665505 C G NSD1 Missense_Mutation p.P1397A 0.41 tolerated_low_confidence(0.25) benign(0.009) TCGA-B2-4099-01 5 19520813 19520813 C A CDH18 Missense_Mutation p.A489S 0.35 tolerated(0.13) benign(0.004) TCGA-B2-4099-01 5 31551468 31551468 A T C5orf22 Silent p.I376I 0.06 TCGA-B2-4099-01 6 116977892 116977892 C T ZUFSP Missense_Mutation p.E306K 0.32 deleterious(0) possibly_damaging(0.899) TCGA-B2-4099-01 6 79944257 79944257 A C HMGN3 Intron 0.32 TCGA-B2-4099-01 7 148485659 148485659 G A CUL1 Missense_Mutation p.G497E 0.30 deleterious(0) probably_damaging(0.999) TCGA-B2-4099-01 7 27211532 27211533 AG - HOXA10 Frame_Shift_Del p.F407* 0.31 TCGA-B2-4099-01 7 73280191 73280191 T C WBSCR28 Silent p.T262T 0.10 TCGA-B2-4099-01 8 23115933 23115933 C T CHMP7 Missense_Mutation p.R311W 0.10 deleterious(0) probably_damaging(0.983) TCGA-B2-4099-01 8 75926309 75926309 G T CRISPLD1 Missense_Mutation p.V200F 0.06 deleterious(0) benign(0.026) TCGA-B2-4099-01 X 125685459 125685459 C T DCAF12L1 Missense_Mutation p.R378Q 0.73 deleterious(0) probably_damaging(0.999) TCGA-B2-4099-01 X 17746842 17746842 C T NHS Silent p.F1411F 0.52 TCGA-B2-4099-01 X 31196785 31196785 C A DMD Splice_Site p.X3408_splice 0.59 TCGA-B2-4099-01 X 48762340 48762340 C T SLC35A2 Silent p.G282G 0.35 TCGA-B2-4099-01 X 65252420 65252420 G A VSIG4 Missense_Mutation p.T195I 0.08 tolerated(0.13) benign(0.147) TCGA-B2-4101-01 10 118101645 118101645 T G CCDC172 Missense_Mutation p.L127R 0.05 deleterious(0.02) benign(0.052) TCGA-B2-4101-01 10 123810032 123810032 C T TACC2 Missense_Mutation p.T38M 0.18 benign(0.335) TCGA-B2-4101-01 10 63999439 63999439 G T RTKN2 Silent p.I152I 0.19 TCGA-B2-4101-01 10 63999440 63999440 A T RTKN2 Missense_Mutation p.I152N 0.19 deleterious(0) possibly_damaging(0.839) TCGA-B2-4101-01 10 70706192 70706192 T C DDX50 Missense_Mutation p.S674P 0.26 tolerated(0.17) benign(0.011) TCGA-B2-4101-01 10 71835428 71835428 G C H2AFY2 Missense_Mutation p.S5T 0.19 tolerated(0.07) unknown(0) TCGA-B2-4101-01 11 117785150 117785150 G A TMPRSS13 Silent p.D212D 0.04 TCGA-B2-4101-01 11 32954712 32954712 A - QSER1 Frame_Shift_Del p.S508Hfs*30 0.17 TCGA-B2-4101-01 11 47828640 47828640 A T NUP160 Missense_Mutation p.L810I 0.10 tolerated(0.51) benign(0.002) TCGA-B2-4101-01 11 57367686 57367686 T C SERPING1 Missense_Mutation p.L129P 0.29 tolerated(0.26) benign(0.001) TCGA-B2-4101-01 12 49415510 49415510 A G KMT2D 3'UTR 0.08 TCGA-B2-4101-01 12 56487323 56487323 G A ERBB3 Missense_Mutation p.R490H 0.11 tolerated(0.12) benign(0.062) TCGA-B2-4101-01 14 69256307 69256307 G - ZFP36L1 Frame_Shift_Del p.L321Wfs*22 0.09 TCGA-B2-4101-01 14 74083716 74083716 C T ACOT6 5'UTR 0.19 TCGA-B2-4101-01 14 99640783 99640783 G A BCL11B Missense_Mutation p.T797M 0.33 deleterious(0) benign(0.335) TCGA-B2-4101-01 15 68628034 68628034 C A ITGA11 Splice_Site p.X475_splice 0.20 TCGA-B2-4101-01 16 55844874 55844874 C A CES1 Missense_Mutation p.A379S 0.08 tolerated(0.06) benign(0.259) TCGA-B2-4101-01 17 10258026 10258026 C T MYH13 Missense_Mutation p.D326N 0.17 tolerated(0.22) benign(0.004) TCGA-B2-4101-01 17 3920721 3920721 T G ZZEF1 Missense_Mutation p.M2649L 0.09 tolerated(0.28) benign(0.299) TCGA-B2-4101-01 17 41154776 41154776 A G RPL27 Missense_Mutation p.E113G 0.20 tolerated(0.08) benign(0.005) TCGA-B2-4101-01 17 41610308 41610308 C T ETV4 Splice_Site p.X182_splice 0.21 TCGA-B2-4101-01 17 5085789 5085790 - CC ZNF594 Frame_Shift_Ins p.V588Gfs*2 0.21 TCGA-B2-4101-01 17 57292295 57292295 C G SMG8 Missense_Mutation p.P970A 0.20 deleterious(0) probably_damaging(1) TCGA-B2-4101-01 18 60497298 60497298 G A PHLPP1 Missense_Mutation p.R536Q 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-B2-4101-01 19 19626874 19626874 G T NDUFA13 5'UTR 0.31 TCGA-B2-4101-01 19 40742002 40742002 C G AKT2 Missense_Mutation p.D324H 0.24 deleterious(0.02) probably_damaging(1) TCGA-B2-4101-01 19 7677733 7677733 G T CAMSAP3 Missense_Mutation p.R812L 0.21 deleterious(0) probably_damaging(0.999) TCGA-B2-4101-01 1 155256981 155256981 A C HCN3 Silent p.R499R 0.22 TCGA-B2-4101-01 1 15888681 15888681 A C DNAJC16 Missense_Mutation p.K400T 0.04 tolerated(0.44) benign(0.004) TCGA-B2-4101-01 1 186646956 186646956 T G PTGS2 Missense_Mutation p.K155T 0.08 tolerated(0.07) benign(0.163) TCGA-B2-4101-01 1 25256117 25256117 C A RUNX3 Silent p.S95S 0.24 TCGA-B2-4101-01 1 85725279 85725279 G A C1orf52 Missense_Mutation p.A13V 0.20 deleterious(0) probably_damaging(0.991) TCGA-B2-4101-01 20 18492907 18492908 TC - SEC23B Frame_Shift_Del p.F87Lfs*16 0.19 TCGA-B2-4101-01 20 33328813 33328813 C A NCOA6 Silent p.T1749T 0.25 TCGA-B2-4101-01 21 30715189 30715189 C T BACH1 3'UTR 0.16 TCGA-B2-4101-01 2 131128788 131128788 A G PTPN18 Missense_Mutation p.Y314C 0.11 tolerated(0.07) benign(0.024) TCGA-B2-4101-01 2 138414712 138414712 G T THSD7B Missense_Mutation p.D1456Y 0.13 deleterious(0) unknown(0) TCGA-B2-4101-01 2 170163814 170163814 T C LRP2 Missense_Mutation p.D135G 0.25 probably_damaging(1) TCGA-B2-4101-01 2 26707486 26707493 TGATGGAA - OTOF Frame_Shift_Del p.F352Qfs*7 0.22 TCGA-B2-4101-01 3 10188196 10188196 A T VHL Splice_Site p.X114_splice 0.25 TCGA-B2-4101-01 3 119135033 119135033 G C ARHGAP31 Missense_Mutation p.E1419D 0.06 deleterious(0) probably_damaging(0.996) TCGA-B2-4101-01 3 193854202 193854202 G A HES1 Silent p.S11S 0.23 TCGA-B2-4101-01 3 196053866 196053866 C T TM4SF19 Nonsense_Mutation p.W80* 0.11 TCGA-B2-4101-01 3 47129722 47129722 C A SETD2 Nonsense_Mutation p.E1720* 0.15 TCGA-B2-4101-01 3 52692279 52692280 AC - PBRM1 Frame_Shift_Del p.V194Cfs*11 0.23 TCGA-B2-4101-01 3 53153991 53153991 G A RFT1 Missense_Mutation p.T202I 0.29 tolerated(0.64) benign(0.002) TCGA-B2-4101-01 4 71346715 71346715 C T MUC7 Missense_Mutation p.P85L 0.19 tolerated(0.29) probably_damaging(0.958) TCGA-B2-4101-01 4 75971507 75971507 G T PARM1 3'UTR 0.24 TCGA-B2-4101-01 5 118970217 118970217 C A FAM170A Missense_Mutation p.H258Q 0.16 deleterious(0.02) probably_damaging(0.935) TCGA-B2-4101-01 5 140236864 140236864 G T PCDHA10 Missense_Mutation p.A411S 0.16 tolerated_low_confidence(0.17) benign(0.239) TCGA-B2-4101-01 5 146793183 146793183 A T DPYSL3 Missense_Mutation p.D286E 0.07 deleterious(0) benign(0.173) TCGA-B2-4101-01 6 118475727 118475727 T C SLC35F1 Missense_Mutation p.F98S 0.04 deleterious(0) possibly_damaging(0.833) TCGA-B2-4101-01 6 31088189 31088189 G A CDSN Missense_Mutation p.S3L 0.37 tolerated_low_confidence(0.25) unknown(0) TCGA-B2-4101-01 6 41196691 41196691 G - TREML4 Frame_Shift_Del p.N102Mfs*49 0.18 TCGA-B2-4101-01 7 143140757 143140757 C G TAS2R60 Nonsense_Mutation p.S71* 0.20 TCGA-B2-4101-01 7 34889021 34889021 C T NPSR1 Intron 0.16 TCGA-B2-4101-01 7 48311657 48311657 C T ABCA13 Silent p.N798N 0.06 TCGA-B2-4101-01 8 11058309 11058309 G A XKR6 Silent p.S180S 0.40 TCGA-B2-4101-01 8 146076470 146076470 A T COMMD5 Missense_Mutation p.L85Q 0.21 deleterious(0) probably_damaging(0.926) TCGA-B2-4101-01 9 43626560 43626560 C A SPATA31A6 Silent p.S709S 0.50 TCGA-B2-4101-01 9 73426085 73426085 C - TRPM3 Intron 0.29 TCGA-B2-4101-01 X 152085828 152085828 G C ZNF185 Splice_Site p.X88_splice 0.32 TCGA-B2-4101-01 X 32834668 32834668 A G DMD Silent p.R149R 0.17 TCGA-B2-4101-01 X 57935826 57935828 GGT - ZXDA In_Frame_Del p.T343del 0.32 TCGA-B2-4102-01 10 105759624 105759624 G T SLK Splice_Site p.X261_splice 0.08 TCGA-B2-4102-01 10 24909709 24909709 G T ARHGAP21 Missense_Mutation p.S372Y 0.21 deleterious(0.01) benign(0.049) TCGA-B2-4102-01 10 3202466 3202466 T G PITRM1 Missense_Mutation p.E283A 0.19 tolerated(0.08) possibly_damaging(0.665) TCGA-B2-4102-01 10 99079955 99079955 T C FRAT1 Missense_Mutation p.S249P 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.543) TCGA-B2-4102-01 11 123810936 123810936 C A OR4D5 Missense_Mutation p.L205M 0.23 tolerated(0.28) possibly_damaging(0.9) TCGA-B2-4102-01 11 65633318 65633318 G C MUS81 Missense_Mutation p.K514N 0.26 tolerated(0.06) benign(0.146) TCGA-B2-4102-01 12 106704914 106704914 T A TCP11L2 Missense_Mutation p.S21T 0.19 tolerated(0.09) benign(0.116) TCGA-B2-4102-01 12 11138813 11138813 G T TAS2R50 Nonsense_Mutation p.S216* 0.11 TCGA-B2-4102-01 12 120660442 120660442 G A PXN Missense_Mutation p.P202L 0.21 deleterious(0) benign(0.426) TCGA-B2-4102-01 12 4835701 4835701 A G GALNT8 Missense_Mutation p.E72G 0.26 deleterious(0.01) benign(0.264) TCGA-B2-4102-01 12 52845500 52845500 G T KRT6B Silent p.G121G 0.13 TCGA-B2-4102-01 12 70990019 70990019 T - PTPRB Frame_Shift_Del p.V357Sfs*68 0.24 TCGA-B2-4102-01 12 97158965 97158965 T C C12orf55 Silent p.D2750D 0.10 TCGA-B2-4102-01 13 51855004 51855004 T C FAM124A Missense_Mutation p.L454P 0.20 deleterious(0.03) probably_damaging(0.994) TCGA-B2-4102-01 13 76430713 76430713 G A LMO7 Missense_Mutation p.C1345Y 0.27 deleterious_low_confidence(0) benign(0.446) TCGA-B2-4102-01 14 22963868 22963868 G A TRAJ44 Silent p.%3D 0.33 TCGA-B2-4102-01 14 59821977 59821977 T G DAAM1 Silent p.G827G 0.33 TCGA-B2-4102-01 15 27126102 27126102 C A GABRA5 Missense_Mutation p.P66T 0.13 deleterious(0) probably_damaging(1) TCGA-B2-4102-01 15 40917500 40917500 G A CASC5 Missense_Mutation p.D1706N 0.19 tolerated(0.09) benign(0.103) TCGA-B2-4102-01 15 42003537 42003537 T C MGA Missense_Mutation p.L1025P 0.09 deleterious(0) probably_damaging(0.999) TCGA-B2-4102-01 15 64496767 64496767 C T CSNK1G1 Missense_Mutation p.R291Q 0.19 tolerated(0.1) possibly_damaging(0.754) TCGA-B2-4102-01 16 2546483 2546483 G C RP11-20I23.1 Missense_Mutation p.G112R 0.22 tolerated(0.49) benign(0.189) TCGA-B2-4102-01 16 2815958 2815958 T C SRRM2 Missense_Mutation p.V1810A 0.14 unknown(0) TCGA-B2-4102-01 16 31202822 31202822 T A FUS 3'UTR 0.22 TCGA-B2-4102-01 16 325303 325303 T C RGS11 Missense_Mutation p.K64R 0.09 tolerated(0.81) possibly_damaging(0.744) TCGA-B2-4102-01 16 58633316 58633316 C T CNOT1 5'UTR 0.18 TCGA-B2-4102-01 17 26940650 26940650 A G RP11-192H23.4 Silent p.G44G 0.24 TCGA-B2-4102-01 17 42392858 42392858 G T RUNDC3A Missense_Mutation p.Q278H 0.19 deleterious(0.04) possibly_damaging(0.838) TCGA-B2-4102-01 17 43226683 43226683 G A HEXIM1 Silent p.E42E 0.22 TCGA-B2-4102-01 17 46135808 46135808 T G NFE2L1 Missense_Mutation p.F375C 0.20 deleterious(0.01) benign(0.066) TCGA-B2-4102-01 17 46135809 46135809 C T NFE2L1 Silent p.F375F 0.20 TCGA-B2-4102-01 17 4836362 4836362 C A GP1BA Missense_Mutation p.L155M 0.28 deleterious(0) probably_damaging(0.996) TCGA-B2-4102-01 17 61607841 61607841 G A KCNH6 Missense_Mutation p.E205K 0.18 tolerated(0.09) probably_damaging(0.987) TCGA-B2-4102-01 18 21214030 21214030 G A ANKRD29 Silent p.I138I 0.17 TCGA-B2-4102-01 19 10738597 10738597 C G SLC44A2 Silent p.A54A 0.23 TCGA-B2-4102-01 19 19313204 19313204 G A NR2C2AP Missense_Mutation p.S80L 0.18 tolerated(0.1) benign(0.232) TCGA-B2-4102-01 19 21910465 21910465 G T ZNF100 Missense_Mutation p.L217I 0.14 tolerated(0.09) possibly_damaging(0.744) TCGA-B2-4102-01 1 111216456 111216456 T C KCNA3 Missense_Mutation p.N326D 0.32 tolerated(0.26) benign(0.214) TCGA-B2-4102-01 1 11159937 11159937 A G EXOSC10 5'UTR 0.15 TCGA-B2-4102-01 1 151492916 151492916 G A CGN Missense_Mutation p.R334K 0.28 tolerated(0.88) benign(0.004) TCGA-B2-4102-01 1 159284210 159284210 G C OR10J3 Silent p.P80P 0.17 TCGA-B2-4102-01 1 183100479 183100479 C G LAMC1 Missense_Mutation p.L1178V 0.17 tolerated(0.12) benign(0.009) TCGA-B2-4102-01 1 204948688 204948688 G A NFASC Splice_Site p.X726_splice 0.08 TCGA-B2-4102-01 1 31656721 31656721 G A NKAIN1 Silent p.C138C 0.19 TCGA-B2-4102-01 1 31656722 31656722 C T NKAIN1 Missense_Mutation p.C138Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-B2-4102-01 1 63284999 63284999 A G ATG4C Missense_Mutation p.I240V 0.21 deleterious(0.01) possibly_damaging(0.669) TCGA-B2-4102-01 20 61511885 61511885 G A DIDO1 Missense_Mutation p.P1808L 0.27 probably_damaging(0.999) TCGA-B2-4102-01 21 10862818 10862818 G C IGHV1OR21-1 Missense_Mutation p.K38N 0.09 deleterious(0.02) possibly_damaging(0.468) TCGA-B2-4102-01 22 38340445 38340445 G A C22orf23 Silent p.I187I 0.20 TCGA-B2-4102-01 22 50941946 50941946 C A LMF2 Silent p.L666L 0.28 TCGA-B2-4102-01 2 163046232 163046232 C T FAP Missense_Mutation p.E495K 0.22 tolerated(0.29) benign(0.173) TCGA-B2-4102-01 2 170387991 170387991 C A FASTKD1 Missense_Mutation p.C733F 0.19 tolerated(0.08) benign(0.072) TCGA-B2-4102-01 2 182542478 182542478 G A NEUROD1 3'UTR 0.38 TCGA-B2-4102-01 2 201507439 201507439 G A AOX1 Missense_Mutation p.R921H 0.19 deleterious(0.02) probably_damaging(1) TCGA-B2-4102-01 2 50280533 50280533 G A NRXN1 Missense_Mutation p.T1375I 0.17 tolerated(0.25) benign(0.02) TCGA-B2-4102-01 2 8871011 8871011 G C KIDINS220 Missense_Mutation p.P1719A 0.21 tolerated_low_confidence(0.33) benign(0) TCGA-B2-4102-01 3 113023882 113023894 CCTGGTGGAGCTT - WDR52 Splice_Site p.X1622_splice 0.16 TCGA-B2-4102-01 3 113152496 113152496 C G WDR52 Missense_Mutation p.D6H 0.10 deleterious_low_confidence(0) possibly_damaging(0.53) TCGA-B2-4102-01 3 129284742 129284742 G A PLXND1 Missense_Mutation p.A1437V 0.23 deleterious(0.04) benign(0.258) TCGA-B2-4102-01 3 33576805 33576805 T C CLASP2 Missense_Mutation p.Y1244C 0.09 deleterious(0.01) possibly_damaging(0.827) TCGA-B2-4102-01 3 38153788 38153788 T G DLEC1 Missense_Mutation p.L1201R 0.27 tolerated(0.06) possibly_damaging(0.614) TCGA-B2-4102-01 3 4345099 4345099 G A SETMAR Silent p.A15A 0.30 TCGA-B2-4102-01 3 48474338 48474354 TTCTGCGCCTCCAGGAG - CCDC51 Frame_Shift_Del p.L234Gfs*15 0.21 TCGA-B2-4102-01 4 178363586 178363586 A G AGA 5'UTR 0.08 TCGA-B2-4102-01 4 186366520 186366520 T C CCDC110 3'UTR 0.11 TCGA-B2-4102-01 4 24878249 24878249 G C CCDC149 Missense_Mutation p.T45S 0.21 tolerated(0.19) benign(0.068) TCGA-B2-4102-01 4 72629131 72629131 C T GC Missense_Mutation p.R251K 0.23 tolerated(0.74) benign(0.032) TCGA-B2-4102-01 4 73414406 73414406 T C ADAMTS3 Missense_Mutation p.N98S 0.11 deleterious(0.01) probably_damaging(0.951) TCGA-B2-4102-01 5 127497359 127497359 G A SLC12A2 Missense_Mutation p.R828Q 0.20 tolerated(0.2) possibly_damaging(0.477) TCGA-B2-4102-01 5 140188387 140188387 G A PCDHA4 Missense_Mutation p.D539N 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.67) TCGA-B2-4102-01 5 149323840 149323840 C T PDE6A Missense_Mutation p.V133I 0.14 tolerated(0.08) probably_damaging(0.982) TCGA-B2-4102-01 5 158511686 158511686 T C EBF1 Missense_Mutation p.E158G 0.09 deleterious(0) probably_damaging(0.966) TCGA-B2-4102-01 6 117663563 117663563 C T ROS1 Missense_Mutation p.V1557I 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-B2-4102-01 6 24278380 24278380 G C DCDC2 Silent p.P273P 0.24 TCGA-B2-4102-01 6 25420357 25420357 C T LRRC16A Nonsense_Mutation p.R52* 0.10 TCGA-B2-4102-01 6 71236096 71236096 A G FAM135A Silent p.T1103T 0.10 TCGA-B2-4102-01 8 144803967 144803967 G T MAPK15 Missense_Mutation p.A459S 0.16 tolerated(0.26) benign(0.083) TCGA-B2-4102-01 8 17794868 17794868 A G PCM1 Missense_Mutation p.N108D 0.38 deleterious(0) probably_damaging(0.999) TCGA-B2-4102-01 8 30703870 30703870 T G TEX15 Silent p.I888I 0.19 TCGA-B2-4102-01 9 109688830 109688830 C A ZNF462 Silent p.P879P 0.20 TCGA-B2-4102-01 9 111956503 111956503 G - EPB41L4B Frame_Shift_Del p.K741Rfs*18 0.26 TCGA-B2-4102-01 9 131233658 131233658 G A ODF2 Silent p.E164E 0.25 TCGA-B2-4102-01 9 131479036 131479036 G A PKN3 Missense_Mutation p.E607K 0.25 deleterious(0.03) probably_damaging(0.939) TCGA-B2-4102-01 9 137321027 137321027 C A RXRA Silent p.T328T 0.09 TCGA-B2-4102-01 9 27284779 27284779 A G EQTN Missense_Mutation p.I276T 0.24 tolerated(0.47) benign(0.004) TCGA-B2-4102-01 X 118222485 118222485 T C KIAA1210 Missense_Mutation p.N903S 0.10 tolerated(0.98) benign(0.001) TCGA-B2-4102-01 X 65428080 65428080 C T HEPH Missense_Mutation p.A906V 0.29 tolerated(0.42) possibly_damaging(0.802) TCGA-B2-5633-01 10 120790300 120790300 G A NANOS1 3'UTR 0.25 TCGA-B2-5633-01 10 134902394 134902394 T A GPR123 5'UTR 0.28 TCGA-B2-5633-01 10 65132766 65132766 C G JMJD1C Intron 0.27 TCGA-B2-5633-01 11 18738324 18738324 G A IGSF22 Silent p.F399F 0.33 TCGA-B2-5633-01 11 5152922 5152922 T C OR52A5 Nonstop_Mutation p.*317Wext*? 0.22 TCGA-B2-5633-01 11 60709588 60709588 A C SLC15A3 Silent p.L342L 0.16 TCGA-B2-5633-01 11 74717078 74717078 A T NEU3 Silent p.P309P 0.19 TCGA-B2-5633-01 12 133454165 133454165 C T CHFR Missense_Mutation p.G70D 0.19 deleterious(0) probably_damaging(1) TCGA-B2-5633-01 12 14923794 14923794 C T HIST4H4 Silent p.E75E 0.20 TCGA-B2-5633-01 13 99083480 99083480 G T FARP1 Nonsense_Mutation p.E697* 0.24 TCGA-B2-5633-01 14 20665558 20665558 C T OR11G2 Missense_Mutation p.H22Y 0.05 tolerated_low_confidence(0.53) benign(0) TCGA-B2-5633-01 16 11114144 11114144 C T CLEC16A Silent p.S466S 0.04 TCGA-B2-5633-01 16 69725994 69725994 T A NFAT5 Missense_Mutation p.S756T 0.28 benign(0.064) TCGA-B2-5633-01 16 69725995 69725995 C A NFAT5 Nonsense_Mutation p.S756* 0.28 TCGA-B2-5633-01 16 81208139 81208139 G T PKD1L2 3'UTR 0.33 TCGA-B2-5633-01 16 87741984 87741984 G A KLHDC4 Silent p.S512S 0.06 TCGA-B2-5633-01 17 37687377 37687378 - AAA CDK12 In_Frame_Ins p.S1427_N1428insK 0.19 TCGA-B2-5633-01 17 3839589 3839589 C G ATP2A3 Missense_Mutation p.W832C 0.23 deleterious(0) probably_damaging(1) TCGA-B2-5633-01 17 80040436 80040436 A T FASN Silent p.L1962L 0.27 TCGA-B2-5633-01 18 21417039 21417039 G A LAMA3 Missense_Mutation p.A1027T 0.41 benign(0.056) TCGA-B2-5633-01 19 39205178 39205178 G A ACTN4 Missense_Mutation p.D297N 0.06 deleterious(0.01) probably_damaging(0.915) TCGA-B2-5633-01 19 49852034 49852034 G A TEAD2 Missense_Mutation p.R225W 0.26 deleterious(0.03) benign(0.221) TCGA-B2-5633-01 1 10364568 10364568 T C KIF1B Intron 0.23 TCGA-B2-5633-01 1 110740166 110740166 G T SLC6A17 Missense_Mutation p.S587I 0.25 deleterious(0) probably_damaging(0.958) TCGA-B2-5633-01 1 11333752 11333752 C A UBIAD1 Missense_Mutation p.P55H 0.24 deleterious(0) probably_damaging(0.999) TCGA-B2-5633-01 1 144931293 144931293 T A PDE4DIP Intron 0.08 TCGA-B2-5633-01 1 155722156 155722156 A G GON4L Missense_Mutation p.V2022A 0.19 tolerated_low_confidence(0.55) benign(0.294) TCGA-B2-5633-01 1 171956945 171956945 G A DNM3 Missense_Mutation p.V129M 0.29 deleterious(0.01) possibly_damaging(0.898) TCGA-B2-5633-01 1 220316404 220316404 C T IARS2 Silent p.I893I 0.22 TCGA-B2-5633-01 1 51887534 51887534 G C EPS15 Intron 0.31 TCGA-B2-5633-01 1 67486082 67486082 A C SLC35D1 Silent p.A282A 0.12 TCGA-B2-5633-01 20 34021789 34021789 C T GDF5 Missense_Mutation p.S475N 0.25 deleterious(0) probably_damaging(0.999) TCGA-B2-5633-01 20 34320047 34320047 T C RBM39 Missense_Mutation p.S38G 0.25 tolerated(0.08) benign(0.153) TCGA-B2-5633-01 20 39744972 39744972 G A TOP1 Missense_Mutation p.V588I 0.30 deleterious(0) probably_damaging(1) TCGA-B2-5633-01 20 4776560 4776560 C T RASSF2 Missense_Mutation p.R63H 0.27 deleterious(0.05) benign(0.028) TCGA-B2-5633-01 21 16338620 16338621 - T NRIP1 Frame_Shift_Ins p.Q632Tfs*30 0.19 TCGA-B2-5633-01 22 41742095 41742095 G A ZC3H7B Silent p.R516R 0.25 TCGA-B2-5633-01 22 43287181 43287181 C G PACSIN2 Missense_Mutation p.Q75H 0.22 deleterious(0) probably_damaging(1) TCGA-B2-5633-01 2 103067362 103067362 G - IL18RAP Frame_Shift_Del p.S422Mfs*7 0.20 TCGA-B2-5633-01 2 163291870 163291870 G A KCNH7 Missense_Mutation p.R598C 0.03 tolerated(0.17) benign(0.037) TCGA-B2-5633-01 2 218713396 218713396 C G TNS1 Missense_Mutation p.G490A 0.37 tolerated(0.56) benign(0.005) TCGA-B2-5633-01 2 219134687 219134687 A G AAMP Splice_Site p.X41_splice 0.23 TCGA-B2-5633-01 2 234401905 234401905 G A USP40 Intron 0.27 TCGA-B2-5633-01 2 241922242 241922242 C G AC104809.2 RNA 0.27 TCGA-B2-5633-01 2 85876130 85876130 T C USP39 3'UTR 0.28 TCGA-B2-5633-01 3 115394971 115394971 A G GAP43 Missense_Mutation p.R84G 0.35 deleterious(0) probably_damaging(0.991) TCGA-B2-5633-01 3 122287741 122287741 G T DTX3L Nonsense_Mutation p.E269* 0.04 TCGA-B2-5633-01 3 128200126 128200126 G T GATA2 Silent p.I393I 0.06 TCGA-B2-5633-01 3 154018911 154018911 A T DHX36 Missense_Mutation p.V408D 0.29 tolerated(0.21) benign(0.004) TCGA-B2-5633-01 3 193039503 193039503 C A ATP13A5 Nonsense_Mutation p.E628* 0.30 TCGA-B2-5633-01 3 52472210 52472210 C T SEMA3G Missense_Mutation p.M505I 0.32 deleterious(0.03) benign(0.017) TCGA-B2-5633-01 4 183064452 183064452 T A AC108142.1 RNA 0.24 TCGA-B2-5633-01 4 38776455 38776455 C T TLR10 Missense_Mutation p.D253N 0.20 tolerated(0.13) benign(0.025) TCGA-B2-5633-01 4 85758222 85758222 T C WDFY3 Missense_Mutation p.T146A 0.28 tolerated(0.5) benign(0.002) TCGA-B2-5633-01 5 151784061 151784061 G A NMUR2 Missense_Mutation p.T205M 0.19 tolerated(0.18) probably_damaging(0.965) TCGA-B2-5633-01 5 153372626 153372626 G C FAM114A2 Silent p.L476L 0.24 TCGA-B2-5633-01 5 154183854 154183854 A T LARP1 Missense_Mutation p.T768S 0.20 tolerated(0.22) probably_damaging(0.997) TCGA-B2-5633-01 5 169028336 169028336 T A SPDL1 Missense_Mutation p.D459E 0.23 tolerated(0.06) possibly_damaging(0.661) TCGA-B2-5633-01 6 107956607 107956607 G C SOBP Silent p.G853G 0.18 TCGA-B2-5633-01 6 117609777 117609777 C G ROS1 Missense_Mutation p.E2308Q 0.28 tolerated_low_confidence(0.19) benign(0.01) TCGA-B2-5633-01 6 126667412 126667412 G C CENPW Missense_Mutation p.C63S 0.20 tolerated(0.27) benign(0.01) TCGA-B2-5633-01 6 132021904 132021904 A G OR2A4 Missense_Mutation p.I213T 0.15 deleterious(0.04) benign(0.135) TCGA-B2-5633-01 6 146264471 146264471 C A SHPRH Silent p.L682L 0.03 TCGA-B2-5633-01 6 168377298 168377298 G C RP3-470B24.5 RNA 0.06 TCGA-B2-5633-01 7 101460891 101460891 C G CUX1 Intron 0.40 TCGA-B2-5633-01 7 102108803 102108803 T A LRWD1 Missense_Mutation p.F300I 0.20 deleterious(0) probably_damaging(0.997) TCGA-B2-5633-01 7 151873651 151873651 G A KMT2C Missense_Mutation p.R2963C 0.23 benign(0.39) TCGA-B2-5633-01 7 45120732 45120734 ACC - NACAD In_Frame_Del p.V1463del 0.18 TCGA-B2-5633-01 7 6523719 6523719 G T FLJ20306 Silent p.A28A 0.06 TCGA-B2-5633-01 X 120182149 120182149 G T GLUD2 Missense_Mutation p.R204M 0.07 deleterious(0) probably_damaging(0.985) TCGA-B2-5633-01 X 50556989 50556989 G A SHROOM4 Silent p.Y10Y 0.53 TCGA-B2-5633-01 X 96328034 96328034 G T DIAPH2 Missense_Mutation p.Q715H 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-B2-5633-01 Y 15417383 15417383 G T UTY Missense_Mutation p.A1057E 0.07 deleterious(0.04) possibly_damaging(0.607) TCGA-B2-5635-01 10 105236264 105236264 G A CALHM3 Silent p.P110P 0.27 TCGA-B2-5635-01 10 134743171 134743171 G A TTC40 Intron 0.20 TCGA-B2-5635-01 10 21158725 21158725 C G NEBL Missense_Mutation p.E176Q 0.25 deleterious(0.04) benign(0.147) TCGA-B2-5635-01 10 60573818 60573818 A G BICC1 Intron 0.25 TCGA-B2-5635-01 10 76790353 76790353 C G KAT6B Missense_Mutation p.S1924C 0.20 possibly_damaging(0.778) TCGA-B2-5635-01 11 110124794 110124794 C T RDX Missense_Mutation p.R279Q 0.24 tolerated(0.06) possibly_damaging(0.488) TCGA-B2-5635-01 11 118917418 118917418 G A HYOU1 Silent p.L898L 0.28 TCGA-B2-5635-01 11 134236992 134236992 C - GLB1L2 Intron 0.40 TCGA-B2-5635-01 11 74413875 74413875 C T CHRDL2 Missense_Mutation p.D362N 0.12 tolerated(0.07) possibly_damaging(0.76) TCGA-B2-5635-01 11 94592715 94592715 A G AMOTL1 Missense_Mutation p.N657S 0.29 tolerated(0.79) benign(0.003) TCGA-B2-5635-01 12 103981134 103981134 A T STAB2 5'UTR 0.27 TCGA-B2-5635-01 14 105406957 105406974 GCATCTTCAGAAGGGGCT - AHNAK2 In_Frame_Del p.E4938_A4944delinsD 0.18 TCGA-B2-5635-01 14 60212848 60212848 T C RTN1 Missense_Mutation p.D198G 0.42 deleterious(0) probably_damaging(0.922) TCGA-B2-5635-01 15 42437860 42437861 - A PLA2G4F Frame_Shift_Ins p.A565Cfs*6 0.23 TCGA-B2-5635-01 15 45409941 45409941 C - DUOXA1 Frame_Shift_Del p.L410Sfs*73 0.23 TCGA-B2-5635-01 15 83805287 83805287 A G TM6SF1 Missense_Mutation p.R326G 0.24 deleterious(0) probably_damaging(0.968) TCGA-B2-5635-01 15 99192876 99192876 G A IGF1R Silent p.A22A 0.23 TCGA-B2-5635-01 16 14989981 14989981 A C NOMO1 3'UTR 0.17 TCGA-B2-5635-01 16 1652468 1652468 T A IFT140 Missense_Mutation p.Q91L 0.22 tolerated(0.13) benign(0.019) TCGA-B2-5635-01 16 67859889 67859889 A T TSNAXIP1 Missense_Mutation p.S298C 0.10 deleterious(0.01) possibly_damaging(0.605) TCGA-B2-5635-01 16 67859890 67859890 G A TSNAXIP1 Missense_Mutation p.S298N 0.12 tolerated(0.14) benign(0.004) TCGA-B2-5635-01 16 88945789 88945789 G A CBFA2T3 Silent p.H517H 0.24 TCGA-B2-5635-01 17 49279412 49279412 A T MBTD1 Missense_Mutation p.F364I 0.25 tolerated(0.39) benign(0) TCGA-B2-5635-01 17 60072679 60072679 A G MED13 Missense_Mutation p.V672A 0.22 deleterious(0.03) benign(0.031) TCGA-B2-5635-01 17 72537855 72537855 C G CD300C Missense_Mutation p.R183P 0.17 deleterious(0) benign(0.006) TCGA-B2-5635-01 18 19076555 19076555 G T GREB1L Missense_Mutation p.G1096V 0.25 deleterious(0.05) benign(0.197) TCGA-B2-5635-01 18 28935225 28935225 C T DSG1 Silent p.H1022H 0.20 TCGA-B2-5635-01 18 51796019 51796019 G T POLI Missense_Mutation p.A35S 0.20 tolerated(0.34) benign(0.002) TCGA-B2-5635-01 19 12125862 12125862 A G ZNF433 Missense_Mutation p.M607T 0.25 tolerated(0.39) benign(0.199) TCGA-B2-5635-01 19 22952718 22952718 C A ZNF99 Intron 0.19 TCGA-B2-5635-01 19 9066178 9066178 G C MUC16 Missense_Mutation p.L7090V 0.17 unknown(0) TCGA-B2-5635-01 1 118168519 118168519 C T FAM46C 3'UTR 0.21 TCGA-B2-5635-01 1 12785985 12785985 A G AADACL3 3'Flank 0.35 TCGA-B2-5635-01 1 160267213 160267220 TCCTTTCT - COPA Frame_Shift_Del p.R735Hfs*13 0.20 TCGA-B2-5635-01 1 161196254 161196254 G T TOMM40L 5'UTR 0.29 TCGA-B2-5635-01 1 179198419 179198419 C T ABL2 Silent p.A38A 0.20 TCGA-B2-5635-01 1 19246190 19246190 A G IFFO2 Silent p.F268F 0.44 TCGA-B2-5635-01 1 207685001 207685001 T A CR1 Splice_Site p.X163_splice 0.20 TCGA-B2-5635-01 1 228548119 228548119 T - OBSCN Intron 0.20 TCGA-B2-5635-01 1 231003963 231003963 C T C1orf198 Missense_Mutation p.G99E 0.18 tolerated(0.54) possibly_damaging(0.866) TCGA-B2-5635-01 1 36553610 36553610 G T TEKT2 Silent p.R372R 0.18 TCGA-B2-5635-01 1 52498994 52498994 G A KTI12 Missense_Mutation p.A147V 0.27 tolerated(0.54) benign(0.008) TCGA-B2-5635-01 1 6214898 6214898 A C CHD5 Silent p.G189G 0.26 TCGA-B2-5635-01 1 67412098 67412098 A T MIER1 Intron 0.30 TCGA-B2-5635-01 1 68171068 68171068 T C GNG12 3'UTR 0.23 TCGA-B2-5635-01 1 78099072 78099072 G A ZZZ3 5'UTR 0.15 TCGA-B2-5635-01 1 89447509 89447509 A C RBMXL1 3'UTR 0.42 TCGA-B2-5635-01 21 35467806 35467806 G C SLC5A3 Silent p.R103R 0.15 TCGA-B2-5635-01 22 30642773 30642773 T A LIF 5'UTR 0.21 TCGA-B2-5635-01 22 38822881 38822881 G C KCNJ4 Missense_Mutation p.F419L 0.25 tolerated_low_confidence(0.35) benign(0.001) TCGA-B2-5635-01 22 49145683 49145683 C T FAM19A5 3'UTR 0.38 TCGA-B2-5635-01 2 10924426 10924426 G A PDIA6 Silent p.L427L 0.32 TCGA-B2-5635-01 2 120831675 120831675 G - EPB41L5 Splice_Site p.X110_splice 0.16 TCGA-B2-5635-01 2 15564514 15564514 C A NBAS Missense_Mutation p.M834I 0.23 deleterious(0.02) benign(0.001) TCGA-B2-5635-01 2 159526361 159526361 C A PKP4 Missense_Mutation p.A953E 0.25 deleterious(0) possibly_damaging(0.905) TCGA-B2-5635-01 2 1652347 1652347 C T PXDN Missense_Mutation p.A1069T 0.17 deleterious(0) probably_damaging(0.999) TCGA-B2-5635-01 2 169989163 169989165 TTA CT LRP2 Frame_Shift_Del p.N4549Kfs*8 0.23 TCGA-B2-5635-01 3 10188287 10188287 G - VHL Frame_Shift_Del p.G144Dfs*15 0.34 TCGA-B2-5635-01 3 113379615 113379615 T C KIAA2018 Missense_Mutation p.H305R 0.24 benign(0) TCGA-B2-5635-01 3 133374159 133374159 T C TOPBP1 Silent p.T239T 0.25 TCGA-B2-5635-01 3 150264590 150264590 A G EIF2A Translation_Start_Site p.M1? 0.13 deleterious(0) benign(0.063) TCGA-B2-5635-01 3 182759471 182759471 G C MCCC1 Missense_Mutation p.A384G 0.52 deleterious(0) probably_damaging(0.952) TCGA-B2-5635-01 3 183888380 183888380 G C DVL3 Missense_Mutation p.G663A 0.48 tolerated(0.45) probably_damaging(0.939) TCGA-B2-5635-01 3 62423832 62423832 C G CADPS Missense_Mutation p.D1242H 0.39 deleterious(0) possibly_damaging(0.861) TCGA-B2-5635-01 3 9792671 9792671 G C OGG1 Silent p.A60A 0.51 TCGA-B2-5635-01 4 140216900 140216900 C T NDUFC1 Missense_Mutation p.R18K 0.23 tolerated(0.61) unknown(0) TCGA-B2-5635-01 4 20543097 20543097 T C SLIT2 Silent p.F666F 0.27 TCGA-B2-5635-01 4 8418179 8418179 A G ACOX3 Missense_Mutation p.Y24H 0.17 deleterious(0) probably_damaging(0.98) TCGA-B2-5635-01 5 112175197 112175203 GCAAATA - APC Frame_Shift_Del p.I1304Kfs*2 0.19 TCGA-B2-5635-01 5 133482273 133482273 A G TCF7 3'UTR 0.41 TCGA-B2-5635-01 5 13719054 13719054 A C DNAH5 Missense_Mutation p.S4146A 0.36 benign(0.299) TCGA-B2-5635-01 5 146070789 146070789 G T PPP2R2B Missense_Mutation p.L120M 0.13 deleterious(0) probably_damaging(0.996) TCGA-B2-5635-01 5 175717637 175717637 G A SIMC1 Intron 0.17 TCGA-B2-5635-01 5 176830951 176830951 T C F12 Missense_Mutation p.I387V 0.42 deleterious(0.02) possibly_damaging(0.575) TCGA-B2-5635-01 5 914680 914680 A G TRIP13 Missense_Mutation p.N374S 0.09 tolerated(0.43) benign(0) TCGA-B2-5635-01 6 10621587 10621587 T C GCNT2 Missense_Mutation p.V310A 0.24 tolerated(0.95) benign(0.023) TCGA-B2-5635-01 6 31516179 31516179 C T ATP6V1G2 5'Flank 0.27 TCGA-B2-5635-01 6 56917523 56917523 T A KIAA1586 Missense_Mutation p.L76M 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.667) TCGA-B2-5635-01 6 83872600 83872600 G C DOPEY1 Missense_Mutation p.V2352L 0.21 deleterious(0.01) benign(0.06) TCGA-B2-5635-01 7 134261166 134261166 A G AKR1B15 Missense_Mutation p.K270R 0.26 tolerated(0.08) benign(0.041) TCGA-B2-5635-01 7 42006240 42006240 C A GLI3 Splice_Site p.X811_splice 0.26 TCGA-B2-5635-01 8 27634237 27634237 A - ESCO2 Frame_Shift_Del p.K139Nfs*6 0.24 TCGA-B2-5635-01 8 38775478 38775479 TG - PLEKHA2 Frame_Shift_Del p.C11Wfs*9 0.17 TCGA-B2-5635-01 9 2729474 2729474 A G KCNV2 Missense_Mutation p.D462G 0.17 deleterious(0) probably_damaging(0.99) TCGA-B2-5635-01 9 90258354 90258354 A G DAPK1 Missense_Mutation p.M328V 0.18 tolerated(0.65) benign(0.017) TCGA-B2-5635-01 X 12734314 12734314 C T FRMPD4 Missense_Mutation p.T579M 0.15 tolerated(0.09) benign(0.336) TCGA-B2-5635-01 X 135579762 135579762 G A HTATSF1 Intron 0.09 TCGA-B2-5635-01 X 53349671 53349671 G A IQSEC2 Silent p.A217A 0.33 TCGA-B2-5636-01 10 102738512 102738512 T C MRPL43 3'Flank 0.14 TCGA-B2-5636-01 10 121556973 121556973 G A INPP5F Missense_Mutation p.G290E 0.29 deleterious(0) probably_damaging(0.914) TCGA-B2-5636-01 10 70139179 70139179 A T RUFY2 Splice_Site p.X437_splice 0.29 TCGA-B2-5636-01 12 123920755 123920755 G A RILPL2 Silent p.V71V 0.38 TCGA-B2-5636-01 12 52865908 52865908 C T KRT6C Missense_Mutation p.G233S 0.43 tolerated(0.17) benign(0.206) TCGA-B2-5636-01 12 7469736 7469736 C T ACSM4 Silent p.F208F 0.32 TCGA-B2-5636-01 14 20444585 20444585 C T OR4K15 Missense_Mutation p.T303M 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-B2-5636-01 14 24529906 24529906 G A LRRC16B Missense_Mutation p.V711M 0.35 deleterious(0.01) possibly_damaging(0.655) TCGA-B2-5636-01 15 68491925 68491925 G A CALML4 Silent p.S86S 0.20 TCGA-B2-5636-01 16 4625364 4625364 G T C16orf96 Missense_Mutation p.A295S 0.33 tolerated(0.24) benign(0.294) TCGA-B2-5636-01 17 31087579 31087579 A G MYO1D Missense_Mutation p.Y368H 0.34 tolerated(0.47) benign(0.021) TCGA-B2-5636-01 19 41268943 41268943 G A SNRPA Silent p.Q188Q 0.26 TCGA-B2-5636-01 20 51872049 51872049 C G TSHZ2 Missense_Mutation p.N684K 0.18 deleterious(0.01) benign(0.021) TCGA-B2-5636-01 22 37870694 37870694 T G MFNG Silent p.T223T 0.23 TCGA-B2-5636-01 2 179410748 179410748 C G TTN Missense_Mutation p.E31739Q 0.28 TCGA-B2-5636-01 3 11885546 11885546 C A TAMM41 Missense_Mutation p.G92V 0.28 deleterious(0) probably_damaging(0.998) TCGA-B2-5636-01 3 186572418 186572418 G A ADIPOQ Silent p.E220E 0.07 TCGA-B2-5636-01 4 155525301 155525301 C A FGG 3'Flank 0.33 TCGA-B2-5636-01 4 89427003 89427003 A G HERC5 Missense_Mutation p.I1017V 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-B2-5636-01 7 151483594 151483594 C T PRKAG2 Missense_Mutation p.G50R 0.05 tolerated_low_confidence(0.07) probably_damaging(0.931) TCGA-B2-5636-01 8 146156384 146156384 C T ZNF16 Missense_Mutation p.G597R 0.32 deleterious(0) probably_damaging(0.967) TCGA-B2-5636-01 8 53569964 53569964 G T RB1CC1 Missense_Mutation p.H809N 0.25 tolerated_low_confidence(0.06) benign(0.069) TCGA-B2-5636-01 8 54628448 54628448 G A ATP6V1H 3'UTR 0.28 TCGA-B2-5639-01 10 103348194 103348194 T A DPCD Intron 0.23 TCGA-B2-5639-01 10 21435345 21435345 C G C10orf113 Missense_Mutation p.E31D 0.32 tolerated_low_confidence(0.06) possibly_damaging(0.801) TCGA-B2-5639-01 10 88696577 88696577 C G MMRN2 Missense_Mutation p.E925Q 0.34 deleterious(0.01) probably_damaging(1) TCGA-B2-5639-01 11 107966269 107966269 A G CUL5 Missense_Mutation p.N586D 0.31 deleterious(0.02) probably_damaging(0.956) TCGA-B2-5639-01 11 119243849 119243849 A T USP2 Silent p.P114P 0.33 TCGA-B2-5639-01 11 124489499 124489499 T C PANX3 Silent p.L283L 0.35 TCGA-B2-5639-01 11 14278214 14278214 C T SPON1 RNA 0.19 TCGA-B2-5639-01 11 18332428 18332428 C G HPS5 Missense_Mutation p.E113Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-B2-5639-01 11 3680821 3680821 C T ART1 Silent p.S24S 0.28 TCGA-B2-5639-01 11 47600449 47600449 T C KBTBD4 Intron 0.19 TCGA-B2-5639-01 11 62491896 62491898 CTC - HNRNPUL2 In_Frame_Del p.G180del 0.34 TCGA-B2-5639-01 11 6648688 6648688 G T DCHS1 Nonsense_Mutation p.S1861* 0.28 TCGA-B2-5639-01 11 89531609 89531609 A G TRIM49 Missense_Mutation p.S350P 0.19 deleterious(0.01) benign(0.291) TCGA-B2-5639-01 12 132334533 132334533 G T MMP17 Missense_Mutation p.G464V 0.32 deleterious(0) probably_damaging(0.994) TCGA-B2-5639-01 12 50190962 50190962 G A NCKAP5L Silent p.G227G 0.58 TCGA-B2-5639-01 14 103986163 103986163 A G CKB 3'UTR 0.13 TCGA-B2-5639-01 14 19563232 19563232 T C POTEG Intron 0.34 TCGA-B2-5639-01 14 90752829 90752829 C T NRDE2 Missense_Mutation p.G1056S 0.07 tolerated(0.4) benign(0.03) TCGA-B2-5639-01 15 40396529 40396529 T G BMF Missense_Mutation p.Y102S 0.44 deleterious(0.01) benign(0.408) TCGA-B2-5639-01 15 90903678 90903678 G C ZNF774 Missense_Mutation p.K205N 0.22 deleterious(0.03) benign(0.033) TCGA-B2-5639-01 16 24581717 24581717 G A RBBP6 Missense_Mutation p.E1236K 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-B2-5639-01 16 25258419 25258419 G T ZKSCAN2 Silent p.A366A 0.23 TCGA-B2-5639-01 16 28507288 28507288 A C APOBR Missense_Mutation p.E309A 0.15 deleterious(0.03) possibly_damaging(0.486) TCGA-B2-5639-01 16 4557741 4557741 T C HMOX2 Missense_Mutation p.Y78H 0.38 deleterious(0) probably_damaging(1) TCGA-B2-5639-01 16 67760358 67760358 A C RANBP10 Missense_Mutation p.F612L 0.32 deleterious(0.01) benign(0.079) TCGA-B2-5639-01 16 70380855 70380855 A T DDX19A 5'UTR 0.36 TCGA-B2-5639-01 17 29653260 29653260 T C NF1 Missense_Mutation p.V1753A 0.10 tolerated(0.09) probably_damaging(0.984) TCGA-B2-5639-01 17 33932838 33932838 G A AP2B1 Missense_Mutation p.M86I 0.28 deleterious(0.01) benign(0.118) TCGA-B2-5639-01 17 60072716 60072716 G A MED13 Nonsense_Mutation p.Q660* 0.32 TCGA-B2-5639-01 17 60072717 60072717 C A MED13 Silent p.V659V 0.32 TCGA-B2-5639-01 18 24441212 24441212 T C AQP4 Missense_Mutation p.I165M 0.33 deleterious(0.01) benign(0.194) TCGA-B2-5639-01 19 11505066 11505066 G A RGL3 3'UTR 0.34 TCGA-B2-5639-01 19 11944935 11944935 T - ZNF440 3'UTR 0.30 TCGA-B2-5639-01 19 11979460 11979460 A G ZNF439 3'UTR 0.35 TCGA-B2-5639-01 19 14846937 14846937 T A EMR2 3'UTR 0.24 TCGA-B2-5639-01 19 22817268 22817268 C A ZNF492 5'UTR 0.21 TCGA-B2-5639-01 19 58016054 58016054 T G ZNF773 Silent p.A21A 0.12 TCGA-B2-5639-01 1 154988079 154988079 A G ZBTB7B Missense_Mutation p.M349V 0.38 tolerated(0.06) benign(0.39) TCGA-B2-5639-01 1 160769740 160769740 G A LY9 Missense_Mutation p.D108N 0.27 tolerated(1) benign(0.001) TCGA-B2-5639-01 1 175334280 175334280 A T TNR Missense_Mutation p.M818K 0.32 tolerated(0.96) benign(0.001) TCGA-B2-5639-01 1 185108704 185108704 C A TRMT1L Missense_Mutation p.D373Y 0.30 deleterious(0) probably_damaging(1) TCGA-B2-5639-01 1 212619272 212619272 T A NENF Missense_Mutation p.L148H 0.30 deleterious(0) probably_damaging(0.965) TCGA-B2-5639-01 21 31869186 31869186 T A KRTAP19-4 Missense_Mutation p.L81F 0.30 deleterious_low_confidence(0) unknown(0) TCGA-B2-5639-01 21 38309266 38309266 T - HLCS Frame_Shift_Del p.K160Rfs*98 0.19 TCGA-B2-5639-01 22 30980402 30980402 C T PES1 Missense_Mutation p.V194I 0.22 tolerated(0.76) probably_damaging(0.935) TCGA-B2-5639-01 2 113875554 113875554 T C IL1RN 5'UTR 0.41 TCGA-B2-5639-01 2 136467724 136467724 A - R3HDM1 Frame_Shift_Del p.K852Nfs*16 0.23 TCGA-B2-5639-01 2 183627468 183627468 C G DNAJC10 Missense_Mutation p.C735W 0.27 deleterious(0) probably_damaging(1) TCGA-B2-5639-01 2 196599881 196599881 T C SLC39A10 3'UTR 0.34 TCGA-B2-5639-01 2 222433490 222433490 G A EPHA4 Missense_Mutation p.S36F 0.34 tolerated(0.15) probably_damaging(0.951) TCGA-B2-5639-01 2 239102961 239102961 G A ILKAP Missense_Mutation p.P45S 0.31 tolerated(0.8) benign(0.003) TCGA-B2-5639-01 2 43971125 43971125 C - PLEKHH2 Frame_Shift_Del p.K1185Rfs*29 0.23 TCGA-B2-5639-01 3 10191470 10191470 G T VHL Splice_Site p.X155_splice 0.39 TCGA-B2-5639-01 3 160474300 160474300 G A PPM1L Silent p.Q68Q 0.26 TCGA-B2-5639-01 3 194150497 194150497 G A ATP13A3 Silent p.G928G 0.34 TCGA-B2-5639-01 3 47165261 47165261 C - SETD2 Frame_Shift_Del p.D289Mfs*12 0.31 TCGA-B2-5639-01 3 52643798 52643808 TAGTCAGATAG - PBRM1 Frame_Shift_Del p.Y697* 0.27 TCGA-B2-5639-01 4 123161367 123161367 C G KIAA1109 Missense_Mutation p.F1510L 0.28 benign(0.005) TCGA-B2-5639-01 4 38119631 38119657 CCCTTGTGGCTGTCTTCCTGCAGATCC - TBC1D1 Splice_Site p.X935_splice 0.33 TCGA-B2-5639-01 4 786298 786298 C T CPLX1 Missense_Mutation p.A44T 0.28 tolerated(0.06) benign(0.061) TCGA-B2-5639-01 5 172517989 172517989 A G CREBRF Silent p.A269A 0.23 TCGA-B2-5639-01 6 161508772 161508772 C T MAP3K4 Missense_Mutation p.A870V 0.32 tolerated(0.3) benign(0.003) TCGA-B2-5639-01 6 25581637 25581637 G A LRRC16A Silent p.R992R 0.16 TCGA-B2-5639-01 6 42222602 42222602 A T TRERF1 Missense_Mutation p.N881K 0.30 deleterious(0.02) benign(0.403) TCGA-B2-5639-01 7 143965472 143965472 T G CTAGE8 Missense_Mutation p.D291A 0.19 tolerated(0.17) benign(0.193) TCGA-B2-5639-01 7 5545141 5545141 C T FBXL18 Missense_Mutation p.D47N 0.35 deleterious(0) probably_damaging(0.999) TCGA-B2-5639-01 7 78119096 78119096 C T MAGI2 Missense_Mutation p.E343K 0.22 deleterious(0) probably_damaging(0.993) TCGA-B2-5639-01 8 100108618 100108618 A T VPS13B Nonsense_Mutation p.R124* 0.29 TCGA-B2-5639-01 8 9577998 9577998 T A TNKS Missense_Mutation p.L622I 0.30 tolerated(0.24) possibly_damaging(0.874) TCGA-B2-5639-01 9 125289180 125289180 G T OR1N1 Silent p.S131S 0.27 TCGA-B2-5639-01 9 137023249 137023249 A C WDR5 3'UTR 0.21 TCGA-B2-5639-01 9 72082806 72082806 A G APBA1 Missense_Mutation p.L472P 0.33 deleterious(0.01) possibly_damaging(0.863) TCGA-B2-5639-01 9 86571202 86571202 C T C9orf64 Missense_Mutation p.D72N 0.34 deleterious(0.04) probably_damaging(0.957) TCGA-B2-5639-01 X 71427852 71427852 G A ERCC6L Silent p.L255L 0.52 TCGA-B2-5641-01 10 105750469 105750469 A G SLK Missense_Mutation p.K63E 0.20 deleterious(0) probably_damaging(0.912) TCGA-B2-5641-01 10 27420850 27420850 C G YME1L1 Missense_Mutation p.G323R 0.11 deleterious(0.01) benign(0.285) TCGA-B2-5641-01 10 37422855 37422855 T G ANKRD30A Missense_Mutation p.M154R 0.13 deleterious(0) benign(0.1) TCGA-B2-5641-01 10 91092356 91092356 C T IFIT3 Intron 0.24 TCGA-B2-5641-01 11 118774132 118774132 C A BCL9L Missense_Mutation p.A188S 0.30 benign(0.014) TCGA-B2-5641-01 11 35282252 35282252 T C SLC1A2 3'UTR 0.34 TCGA-B2-5641-01 11 43283988 43283988 T C HNRNPKP3 RNA 0.12 TCGA-B2-5641-01 11 6232259 6232259 A G C11orf42 Missense_Mutation p.D330G 0.09 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-B2-5641-01 11 6816240 6816240 G A OR6A2 Missense_Mutation p.P234S 0.27 tolerated(0.05) benign(0.088) TCGA-B2-5641-01 11 82985713 82985713 C G CCDC90B Missense_Mutation p.S132T 0.05 deleterious(0.01) probably_damaging(0.988) TCGA-B2-5641-01 12 102158580 102158580 T - GNPTAB Frame_Shift_Del p.D706Tfs*4 0.17 TCGA-B2-5641-01 12 121205204 121205205 - T SPPL3 Nonsense_Mutation p.Y322* 0.13 TCGA-B2-5641-01 12 32134405 32134405 T C KIAA1551 Silent p.N172N 0.24 TCGA-B2-5641-01 12 55523606 55523606 A G OR9K2 Silent p.Q18Q 0.09 TCGA-B2-5641-01 12 56216895 56216895 T C DNAJC14 Silent p.A531A 0.21 TCGA-B2-5641-01 13 32900684 32900684 G C BRCA2 Missense_Mutation p.D189H 0.20 deleterious(0) probably_damaging(1) TCGA-B2-5641-01 13 42461433 42461433 A G VWA8 Missense_Mutation p.I239T 0.16 deleterious(0) probably_damaging(0.997) TCGA-B2-5641-01 14 22932049 22932049 G C TRDC Missense_Mutation p.E43Q 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-B2-5641-01 14 58954685 58954685 T G KIAA0586 Missense_Mutation p.F1182V 0.08 tolerated(1) benign(0.004) TCGA-B2-5641-01 14 75329252 75329252 A C PROX2 Intron 0.13 TCGA-B2-5641-01 14 78184763 78184764 - T SNW1 Frame_Shift_Ins p.N453Kfs*9 0.10 TCGA-B2-5641-01 15 23006147 23006147 T A NIPA2 3'UTR 0.16 TCGA-B2-5641-01 15 52645836 52645836 A C MYO5A Missense_Mutation p.I1196S 0.21 tolerated(0.81) benign(0.004) TCGA-B2-5641-01 15 56735643 56735643 A C MNS1 Nonsense_Mutation p.Y332* 0.20 TCGA-B2-5641-01 15 59515376 59515376 C G MYO1E Silent p.V264V 0.05 TCGA-B2-5641-01 15 79585881 79585881 C A ANKRD34C Silent p.G85G 0.15 TCGA-B2-5641-01 16 15155580 15155580 C A RRN3 3'UTR 0.22 TCGA-B2-5641-01 16 31193930 31193930 G A FUS Silent p.T45T 0.15 TCGA-B2-5641-01 16 31193931 31193931 G C FUS Missense_Mutation p.D46H 0.15 deleterious(0.01) unknown(0) TCGA-B2-5641-01 16 57785950 57785950 C T KATNB1 Silent p.A205A 0.26 TCGA-B2-5641-01 16 57790860 57790860 G A KATNB1 3'UTR 0.31 TCGA-B2-5641-01 16 8987742 8987742 A G USP7 3'UTR 0.19 TCGA-B2-5641-01 17 17810845 17810845 T A TOM1L2 Missense_Mutation p.E18V 0.20 deleterious(0) probably_damaging(0.98) TCGA-B2-5641-01 17 19237311 19237311 A G EPN2 Missense_Mutation p.N557S 0.14 tolerated(0.49) possibly_damaging(0.695) TCGA-B2-5641-01 17 4389784 4389784 C T SPNS3 Silent p.C452C 0.22 TCGA-B2-5641-01 17 46654168 46654168 G C HOXB4 Silent p.P224P 0.16 TCGA-B2-5641-01 17 60140520 60140520 C T MED13 Missense_Mutation p.R70Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-B2-5641-01 18 67871410 67871413 AGCC T RTTN In_Frame_Del p.A103del 0.32 TCGA-B2-5641-01 18 71930704 71930704 A G CYB5A Silent p.G46G 0.28 TCGA-B2-5641-01 19 15223181 15223181 C A SYDE1 Missense_Mutation p.H535N 0.24 deleterious(0) probably_damaging(0.952) TCGA-B2-5641-01 19 21300510 21300510 A G ZNF714 Missense_Mutation p.K347R 0.22 deleterious(0.02) probably_damaging(0.964) TCGA-B2-5641-01 19 45004270 45004270 G A ZNF180 Missense_Mutation p.T8M 0.24 deleterious_low_confidence(0.05) benign(0.019) TCGA-B2-5641-01 19 49641602 49641602 C T PPFIA3 Missense_Mutation p.A665V 0.24 deleterious(0.02) probably_damaging(0.958) TCGA-B2-5641-01 19 5784427 5784427 G T PRR22 Missense_Mutation p.P52T 0.19 tolerated(0.06) benign(0.294) TCGA-B2-5641-01 1 201029869 201029869 C T CACNA1S Missense_Mutation p.V1111M 0.19 deleterious(0.01) possibly_damaging(0.832) TCGA-B2-5641-01 1 20141297 20141297 G A RNF186 Missense_Mutation p.R100C 0.31 deleterious(0.02) benign(0.129) TCGA-B2-5641-01 1 21226401 21226401 T C EIF4G3 Silent p.V546V 0.20 TCGA-B2-5641-01 1 57415368 57415368 G A C8B Missense_Mutation p.R242C 0.24 deleterious(0.02) possibly_damaging(0.663) TCGA-B2-5641-01 1 95286513 95286513 A G SLC44A3 Silent p.A12A 0.19 TCGA-B2-5641-01 20 15967710 15967710 G C MACROD2 Splice_Site p.X354_splice 0.17 TCGA-B2-5641-01 20 36641291 36641291 G T TTI1 Missense_Mutation p.L310M 0.26 tolerated(0.19) possibly_damaging(0.462) TCGA-B2-5641-01 20 36978015 36978015 C T LBP Silent p.T63T 0.21 TCGA-B2-5641-01 21 32638797 32638797 G C TIAM1 Missense_Mutation p.S164R 0.06 deleterious_low_confidence(0.02) benign(0.19) TCGA-B2-5641-01 22 24898325 24898325 G A UPB1 Intron 0.22 TCGA-B2-5641-01 2 128066323 128066323 C A MAP3K2 Missense_Mutation p.R491L 0.20 tolerated(0.07) possibly_damaging(0.823) TCGA-B2-5641-01 2 150443746 150443747 GT - MMADHC 5'UTR 0.18 TCGA-B2-5641-01 2 167328884 167328884 G A SCN7A Missense_Mutation p.S172L 0.23 tolerated(0.07) possibly_damaging(0.685) TCGA-B2-5641-01 2 179439168 179439168 A C TTN Nonsense_Mutation p.Y23897* 0.19 TCGA-B2-5641-01 2 232577853 232577853 T C PTMA 3'UTR 0.05 TCGA-B2-5641-01 2 238233406 238233406 G A COL6A3 3'UTR 0.21 TCGA-B2-5641-01 2 46808416 46808416 A T RHOQ 3'UTR 0.12 TCGA-B2-5641-01 2 65541212 65541212 C T SPRED2 Missense_Mutation p.G227E 0.30 deleterious(0.02) probably_damaging(1) TCGA-B2-5641-01 2 96646420 96646421 - AA ANKRD36C Frame_Shift_Ins p.Y236Ffs*14 0.15 TCGA-B2-5641-01 3 46497300 46497300 T C LTF Missense_Mutation p.E162G 0.09 tolerated(0.14) benign(0.04) TCGA-B2-5641-01 3 53757596 53757596 A C CACNA1D Missense_Mutation p.E621A 0.05 deleterious(0) probably_damaging(0.996) TCGA-B2-5641-01 4 123150305 123150305 T C KIAA1109 Silent p.T984T 0.17 TCGA-B2-5641-01 4 123150307 123150307 C A KIAA1109 Nonsense_Mutation p.S985* 0.17 TCGA-B2-5641-01 4 128694815 128694815 G T SLC25A31 3'UTR 0.24 TCGA-B2-5641-01 4 159789573 159789573 G C FNIP2 Silent p.P595P 0.14 TCGA-B2-5641-01 4 186244946 186244946 G A SNX25 Missense_Mutation p.D417N 0.19 deleterious(0.01) benign(0.018) TCGA-B2-5641-01 4 37839173 37839173 A G PGM2 Missense_Mutation p.T127A 0.21 tolerated(0.23) benign(0.001) TCGA-B2-5641-01 4 649741 649741 C G PDE6B Silent p.A335A 0.16 TCGA-B2-5641-01 4 68358686 68358686 G C CENPC Missense_Mutation p.P774A 0.20 deleterious(0.02) possibly_damaging(0.777) TCGA-B2-5641-01 5 1065466 1065466 G A SLC12A7 Missense_Mutation p.T790M 0.20 deleterious(0) probably_damaging(0.953) TCGA-B2-5641-01 5 127647000 127647000 A - FBN2 Frame_Shift_Del p.I1689Tfs*47 0.24 TCGA-B2-5641-01 5 128957927 128957927 G A ADAMTS19 Silent p.P546P 0.03 TCGA-B2-5641-01 5 137519224 137519224 A G KIF20A Missense_Mutation p.N365D 0.21 deleterious(0) probably_damaging(1) TCGA-B2-5641-01 5 137682652 137682653 TG - FAM53C 3'UTR 0.11 TCGA-B2-5641-01 5 140389517 140389517 C G PCDHAC1 Missense_Mutation p.Q963E 0.06 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-B2-5641-01 5 162900387 162900387 G A HMMR Missense_Mutation p.C243Y 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-B2-5641-01 5 180432814 180432814 C T BTNL3 Missense_Mutation p.A448V 0.18 tolerated(0.29) benign(0) TCGA-B2-5641-01 5 55086409 55086409 G A DDX4 Missense_Mutation p.C393Y 0.16 tolerated(0.05) probably_damaging(0.945) TCGA-B2-5641-01 6 33287883 33287883 T A DAXX Missense_Mutation p.E457V 0.19 deleterious(0.01) benign(0.385) TCGA-B2-5641-01 6 41168693 41168693 T A TREML2 Silent p.S18S 0.10 TCGA-B2-5641-01 7 105111238 105111238 G A PUS7 Missense_Mutation p.T432I 0.20 tolerated(0.15) benign(0.063) TCGA-B2-5641-01 7 122114547 122114547 C - CADPS2 Frame_Shift_Del p.G629Vfs*31 0.21 TCGA-B2-5641-01 7 157160099 157160100 - GA DNAJB6 Frame_Shift_Ins p.F91Afs*78 0.17 TCGA-B2-5641-01 7 72717575 72717575 A T NSUN5 Intron 0.21 TCGA-B2-5641-01 7 90042424 90042424 C G CLDN12 Missense_Mutation p.T145S 0.22 tolerated(0.06) benign(0.014) TCGA-B2-5641-01 8 18662289 18662289 G A PSD3 Missense_Mutation p.A585V 0.22 deleterious(0.01) probably_damaging(1) TCGA-B2-5641-01 8 24242084 24242084 T C ADAMDEC1 Missense_Mutation p.W23R 0.21 tolerated(0.09) benign(0.226) TCGA-B2-5641-01 8 56436104 56436104 G T XKR4 Missense_Mutation p.C424F 0.22 deleterious(0) probably_damaging(0.996) TCGA-B2-5641-01 9 103114761 103114761 C A TEX10 Intron 0.34 TCGA-B2-5641-01 9 107594016 107594023 AGCCCAGA - ABCA1 Frame_Shift_Del p.F532Wfs*13 0.10 TCGA-B2-5641-01 9 27202840 27202840 C G TEK Missense_Mutation p.N644K 0.11 tolerated(0.3) benign(0.167) TCGA-B2-5641-01 X 130410026 130410026 C T IGSF1 Silent p.E940E 0.31 TCGA-B2-5641-01 X 53247129 53247135 CCACCTT - KDM5C Frame_Shift_Del p.E122Vfs*14 0.38 TCGA-B2-5641-01 X 53247143 53247143 C G KDM5C Silent p.V119V 0.28 TCGA-B2-5641-01 X 54044120 54044120 G T PHF8 Missense_Mutation p.T179N 0.42 tolerated(0.13) possibly_damaging(0.447) TCGA-B2-A4SR-01 10 99619338 99619338 C T GOLGA7B Missense_Mutation p.R46W 0.04 deleterious(0) probably_damaging(0.973) TCGA-B2-A4SR-01 11 118209936 118209936 G A CD3D Nonsense_Mutation p.R153* 0.10 TCGA-B2-A4SR-01 11 314955 314955 G A IFITM1 Missense_Mutation p.G74R 0.25 tolerated(0.09) probably_damaging(0.989) TCGA-B2-A4SR-01 11 60268655 60268655 T C MS4A12 Silent p.S138S 0.05 TCGA-B2-A4SR-01 12 102155098 102155098 G A GNPTAB Missense_Mutation p.S981L 0.31 deleterious(0) probably_damaging(0.995) TCGA-B2-A4SR-01 12 53068992 53068992 G A KRT1 Silent p.S640S 0.06 TCGA-B2-A4SR-01 12 57389920 57389921 - A GPR182 Frame_Shift_Ins p.M310Nfs*32 0.18 TCGA-B2-A4SR-01 12 57602511 57602511 A T LRP1 Missense_Mutation p.D4019V 0.26 probably_damaging(1) TCGA-B2-A4SR-01 13 39438574 39438574 T G FREM2 Missense_Mutation p.I2605R 0.28 deleterious(0.01) benign(0.143) TCGA-B2-A4SR-01 14 104488663 104488663 A T TDRD9 Missense_Mutation p.T868S 0.30 tolerated(0.65) benign(0.003) TCGA-B2-A4SR-01 14 20711004 20711004 C A OR11H4 Silent p.I18I 0.24 TCGA-B2-A4SR-01 14 35331315 35331315 A T BAZ1A Missense_Mutation p.F109L 0.05 deleterious(0) benign(0.418) TCGA-B2-A4SR-01 16 20975781 20975781 A - DNAH3 Frame_Shift_Del p.L3142Cfs*14 0.11 TCGA-B2-A4SR-01 16 81194413 81194413 G C PKD1L2 RNA 0.28 TCGA-B2-A4SR-01 17 32959776 32959776 C A TMEM132E Silent p.S422S 0.28 TCGA-B2-A4SR-01 17 73910374 73910374 C T FBF1 Silent p.Q925Q 0.31 TCGA-B2-A4SR-01 17 74943958 74943958 C A MGAT5B Missense_Mutation p.P666Q 0.29 deleterious(0.04) possibly_damaging(0.573) TCGA-B2-A4SR-01 18 120833 120833 T - ROCK1P1 RNA 0.15 TCGA-B2-A4SR-01 18 56587595 56587595 T G ZNF532 Silent p.V692V 0.04 TCGA-B2-A4SR-01 19 15770309 15770309 T C CYP4F3 3'UTR 0.40 TCGA-B2-A4SR-01 19 16212200 16212200 G A TPM4 3'UTR 0.08 TCGA-B2-A4SR-01 19 19416726 19416726 C A SUGP1 Missense_Mutation p.R157L 0.05 deleterious(0) possibly_damaging(0.825) TCGA-B2-A4SR-01 19 19453622 19453624 AGA - MAU2 In_Frame_Del p.K308del 0.28 TCGA-B2-A4SR-01 19 39421191 39421191 C - SARS2 Frame_Shift_Del p.F63Sfs*34 0.21 TCGA-B2-A4SR-01 19 4859922 4859922 C T PLIN3 Missense_Mutation p.D61N 0.27 tolerated(0.19) possibly_damaging(0.875) TCGA-B2-A4SR-01 19 7742012 7742012 A G C19orf59 Silent p.Q15Q 0.27 TCGA-B2-A4SR-01 1 107599847 107599847 C G PRMT6 Silent p.V170V 0.27 TCGA-B2-A4SR-01 1 145296511 145296511 C T NBPF10 Nonsense_Mutation p.Q145* 0.14 TCGA-B2-A4SR-01 1 183201415 183201415 G T LAMC2 Missense_Mutation p.G651C 0.20 deleterious(0.01) possibly_damaging(0.738) TCGA-B2-A4SR-01 1 64014785 64014785 G A DLEU2L 5'UTR 0.40 TCGA-B2-A4SR-01 20 31672725 31672725 T A BPIFB4 Silent p.P235P 0.07 TCGA-B2-A4SR-01 22 16449608 16449608 C A OR11H1 Missense_Mutation p.C66F 0.12 deleterious(0.02) benign(0.004) TCGA-B2-A4SR-01 2 105473335 105473335 A G POU3F3 Missense_Mutation p.N456S 0.05 deleterious(0) probably_damaging(0.993) TCGA-B2-A4SR-01 2 166731151 166731151 A C TTC21B 3'UTR 0.30 TCGA-B2-A4SR-01 2 167760284 167760284 G A XIRP2 Missense_Mutation p.E98K 0.27 possibly_damaging(0.84) TCGA-B2-A4SR-01 2 207513434 207513434 G A DYTN 3'Flank 0.05 TCGA-B2-A4SR-01 2 32656027 32656027 A G BIRC6 Silent p.S1039S 0.24 TCGA-B2-A4SR-01 2 33749081 33749081 A G RASGRP3 Missense_Mutation p.R218G 0.24 deleterious(0) probably_damaging(0.998) TCGA-B2-A4SR-01 2 46808182 46808182 G A RHOQ Missense_Mutation p.R193K 0.03 tolerated(0.64) benign(0.001) TCGA-B2-A4SR-01 2 55195268 55195268 C G EML6 Missense_Mutation p.L1868V 0.05 tolerated(0.08) benign(0.176) TCGA-B2-A4SR-01 2 85552108 85552108 A T TGOLN2 Missense_Mutation p.V413D 0.26 deleterious(0) possibly_damaging(0.904) TCGA-B2-A4SR-01 3 122414463 122414463 T - PARP14 Frame_Shift_Del p.P265Lfs*7 0.23 TCGA-B2-A4SR-01 3 130346200 130346200 G A COL6A6 Missense_Mutation p.R1660H 0.26 tolerated(0.06) benign(0.001) TCGA-B2-A4SR-01 3 142144341 142144341 T - XRN1 Frame_Shift_Del p.Y149Ffs*3 0.22 TCGA-B2-A4SR-01 3 39156132 39156132 G T TTC21A Missense_Mutation p.Q205H 0.08 deleterious(0.02) possibly_damaging(0.677) TCGA-B2-A4SR-01 3 49282154 49282154 G A CCDC36 Missense_Mutation p.V174M 0.33 tolerated(0.07) benign(0.269) TCGA-B2-A4SR-01 3 52773613 52773613 A G NEK4 Silent p.L711L 0.08 TCGA-B2-A4SR-01 4 57883769 57883769 T A POLR2B Missense_Mutation p.M733K 0.29 deleterious(0) probably_damaging(0.93) TCGA-B2-A4SR-01 5 66438288 66438288 A G MAST4 Missense_Mutation p.E886G 0.31 possibly_damaging(0.76) TCGA-B2-A4SR-01 5 76754929 76754929 G A WDR41 Silent p.T123T 0.24 TCGA-B2-A4SR-01 5 93120189 93120189 G C FAM172A Missense_Mutation p.A308G 0.27 tolerated(0.41) benign(0.021) TCGA-B2-A4SR-01 6 105577263 105577263 C A BVES Missense_Mutation p.K114N 0.20 tolerated(0.11) benign(0.025) TCGA-B2-A4SR-01 6 129573406 129573406 A G LAMA2 Missense_Mutation p.I688V 0.33 tolerated(0.14) benign(0.008) TCGA-B2-A4SR-01 6 138638505 138638505 C T KIAA1244 Missense_Mutation p.T1488M 0.04 tolerated(0.1) possibly_damaging(0.79) TCGA-B2-A4SR-01 6 24706359 24706359 A G C6orf62 3'UTR 0.27 TCGA-B2-A4SR-01 6 29142055 29142055 A C OR2J2 Missense_Mutation p.I215L 0.05 deleterious(0.01) possibly_damaging(0.857) TCGA-B2-A4SR-01 7 24905697 24905697 T C OSBPL3 Missense_Mutation p.S181G 0.15 tolerated(0.42) benign(0.001) TCGA-B2-A4SR-01 7 99708930 99708930 A T TAF6 Silent p.I342I 0.05 TCGA-B2-A4SR-01 8 110460620 110460620 G T PKHD1L1 Missense_Mutation p.G2009W 0.22 deleterious(0) probably_damaging(0.999) TCGA-B2-A4SR-01 8 82598155 82598156 - A IMPA1 5'UTR 0.27 TCGA-B2-A4SR-01 9 104187249 104187249 A G ALDOB Missense_Mutation p.L292P 0.31 tolerated(0.1) benign(0.243) TCGA-B2-A4SR-01 9 136216813 136216813 G T RPL7A Missense_Mutation p.K107N 0.32 deleterious(0.01) benign(0.415) TCGA-B2-A4SR-01 9 17789417 17789417 C T SH3GL2 Missense_Mutation p.R165C 0.04 deleterious(0) probably_damaging(0.984) TCGA-B2-A4SR-01 9 38396859 38396873 GGCTACATCCAGCTT - ALDH1B1 In_Frame_Del p.Y373_G377del 0.21 TCGA-B2-A4SR-01 9 97082496 97082496 G A NUTM2F Silent p.V454V 0.28 TCGA-B2-A4SR-01 X 153706353 153706353 A C LAGE3 Missense_Mutation p.I121S 0.65 tolerated(0.05) possibly_damaging(0.718) TCGA-B4-5377-01 10 13213138 13213138 C T MCM10 Missense_Mutation p.A75V 0.34 deleterious(0.01) possibly_damaging(0.616) TCGA-B4-5377-01 10 73565625 73565625 C - CDH23 Frame_Shift_Del p.N405Kfs*9 0.16 TCGA-B4-5377-01 10 79814397 79814397 C T RPS24 Nonsense_Mutation p.Q167* 0.10 TCGA-B4-5377-01 10 96290995 96290995 T C TBC1D12 Silent p.D679D 0.32 TCGA-B4-5377-01 11 62433322 62433322 T C METTL12 5'UTR 0.40 TCGA-B4-5377-01 11 62601147 62601147 C A WDR74 Splice_Site p.X308_splice 0.34 TCGA-B4-5377-01 11 65648930 65648930 G T CTSW Missense_Mutation p.R75S 0.41 deleterious(0.01) possibly_damaging(0.515) TCGA-B4-5377-01 12 111351119 111351119 G T MYL2 Missense_Mutation p.P95H 0.34 deleterious(0) probably_damaging(0.958) TCGA-B4-5377-01 12 22676365 22676365 C T C2CD5 Missense_Mutation p.M265I 0.33 tolerated(0.64) benign(0.001) TCGA-B4-5377-01 12 51092926 51092926 T G DIP2B Missense_Mutation p.S756A 0.35 tolerated(0.35) benign(0.062) TCGA-B4-5377-01 12 56915754 56915754 C A RBMS2 5'UTR 0.42 TCGA-B4-5377-01 12 66704341 66704341 G A HELB Missense_Mutation p.G545S 0.04 tolerated(1) benign(0.204) TCGA-B4-5377-01 12 80839468 80839468 C T PTPRQ Missense_Mutation p.L121F 0.32 tolerated(0.31) benign(0.389) TCGA-B4-5377-01 13 25075850 25075850 T C PARP4 Silent p.R85R 0.30 TCGA-B4-5377-01 16 17211800 17211800 G A XYLT1 Missense_Mutation p.R754C 0.42 deleterious(0) probably_damaging(1) TCGA-B4-5377-01 16 21098199 21098199 G C DNAH3 Missense_Mutation p.P950A 0.33 deleterious(0) probably_damaging(0.911) TCGA-B4-5377-01 16 70834754 70834754 G A VAC14 Missense_Mutation p.A17V 0.07 deleterious(0.01) probably_damaging(0.942) TCGA-B4-5377-01 16 74694997 74694997 C T RFWD3 Silent p.L117L 0.04 TCGA-B4-5377-01 16 89603452 89603452 C T SPG7 Intron 0.12 TCGA-B4-5377-01 17 28598331 28598331 T C BLMH Silent p.S368S 0.27 TCGA-B4-5377-01 17 33348596 33348596 G A RFFL Silent p.L129L 0.41 TCGA-B4-5377-01 19 11106894 11106894 A C SMARCA4 Missense_Mutation p.E533D 0.27 probably_damaging(0.989) TCGA-B4-5377-01 19 18901411 18901411 G A COMP Silent p.I59I 0.30 TCGA-B4-5377-01 19 39521925 39521925 C T FBXO27 Missense_Mutation p.D134N 0.28 tolerated(0.8) benign(0.03) TCGA-B4-5377-01 19 43576014 43576014 G A PSG2 Missense_Mutation p.P268S 0.05 deleterious(0.04) benign(0.385) TCGA-B4-5377-01 19 52090780 52090780 G A ZNF175 Missense_Mutation p.G399D 0.25 deleterious(0.03) possibly_damaging(0.686) TCGA-B4-5377-01 1 15909873 15909873 A G AGMAT Missense_Mutation p.I97T 0.28 deleterious(0) probably_damaging(0.999) TCGA-B4-5377-01 1 179609030 179609030 T - TDRD5 Frame_Shift_Del p.Q527Sfs*8 0.15 TCGA-B4-5377-01 1 222695889 222695889 G C HHIPL2 3'UTR 0.42 TCGA-B4-5377-01 1 231556742 231556742 A G EGLN1 Splice_Site p.X297_splice 0.06 TCGA-B4-5377-01 1 89318823 89318823 C - GTF2B 3'UTR 0.42 TCGA-B4-5377-01 20 34240342 34240342 T - RBM12 3'UTR 0.36 TCGA-B4-5377-01 21 47533975 47533975 C A COL6A2 Nonsense_Mutation p.Y263* 0.51 TCGA-B4-5377-01 2 179422115 179422115 T C TTN Missense_Mutation p.I29292V 0.05 TCGA-B4-5377-01 2 201725966 201725966 G A CLK1 Missense_Mutation p.H171Y 0.22 tolerated(0.27) benign(0.003) TCGA-B4-5377-01 2 230411681 230411681 G T DNER Nonsense_Mutation p.C325* 0.36 TCGA-B4-5377-01 3 130743620 130743620 G T ASTE1 Missense_Mutation p.S177R 0.30 tolerated(0.35) possibly_damaging(0.588) TCGA-B4-5377-01 3 151134124 151134124 C - MED12L Frame_Shift_Del p.Q2074Sfs*63 0.38 TCGA-B4-5377-01 3 155198763 155198763 T C PLCH1 Silent p.R1692R 0.09 TCGA-B4-5377-01 3 156272868 156272868 T C SSR3 Missense_Mutation p.K4R 0.21 tolerated(0.17) benign(0.003) TCGA-B4-5377-01 3 160025463 160025463 C A IFT80 Missense_Mutation p.C355F 0.07 deleterious(0) probably_damaging(0.999) TCGA-B4-5377-01 3 167045872 167045872 A G ZBBX Silent p.R240R 0.33 TCGA-B4-5377-01 3 186459935 186459935 G A KNG1 Missense_Mutation p.D584N 0.05 tolerated(0.05) benign(0.277) TCGA-B4-5377-01 3 189612121 189612144 ACAGTCAGTGTGGGCTCCAGTGAG - TP63 In_Frame_Del p.V626_T633del 0.50 TCGA-B4-5377-01 3 190106143 190106143 G T CLDN16 Missense_Mutation p.A79S 0.31 deleterious(0.04) benign(0.35) TCGA-B4-5377-01 3 52692333 52692333 T A PBRM1 Splice_Site p.X177_splice 0.27 TCGA-B4-5377-01 3 77651362 77651362 T C ROBO2 Silent p.D968D 0.08 TCGA-B4-5377-01 4 128725181 128725181 A G HSPA4L Silent p.Q308Q 0.32 TCGA-B4-5377-01 4 177082093 177082093 A G WDR17 Missense_Mutation p.H921R 0.04 tolerated(0.64) benign(0.271) TCGA-B4-5377-01 4 85611655 85611679 TTACCTGTTTGAGGGTGACGGTCTT - WDFY3 Splice_Site p.X3115_splice 0.17 TCGA-B4-5377-01 4 89198308 89198308 G A PPM1K Silent p.R176R 0.03 TCGA-B4-5377-01 5 108717359 108717359 C A PJA2 Missense_Mutation p.G26V 0.26 deleterious(0) probably_damaging(0.996) TCGA-B4-5377-01 5 161580106 161580106 C T GABRG2 Missense_Mutation p.T427I 0.34 tolerated(0.2) benign(0.098) TCGA-B4-5377-01 5 176863239 176863239 A C GRK6 Missense_Mutation p.Y408S 0.25 deleterious(0) possibly_damaging(0.467) TCGA-B4-5377-01 5 80600728 80600728 A G ZCCHC9 Missense_Mutation p.N51S 0.32 tolerated(0.28) benign(0.003) TCGA-B4-5377-01 6 16254862 16254862 C T GMPR Missense_Mutation p.P121S 0.03 tolerated(0.11) benign(0.163) TCGA-B4-5377-01 6 4128014 4128014 T C ECI2 Missense_Mutation p.I185V 0.05 tolerated(1) benign(0) TCGA-B4-5377-01 7 84642124 84642124 A T SEMA3D Missense_Mutation p.I581N 0.31 tolerated(0.36) benign(0.148) TCGA-B4-5377-01 7 86827282 86827282 A G TMEM243 Missense_Mutation p.L70S 0.37 deleterious(0) probably_damaging(0.961) TCGA-B4-5377-01 7 97822897 97822897 C T LMTK2 Silent p.P1040P 0.07 TCGA-B4-5377-01 8 10396087 10396087 C A PRSS55 Silent p.T281T 0.36 TCGA-B4-5377-01 8 104513249 104513249 T C RIMS2 Silent p.D45D 0.31 TCGA-B4-5377-01 8 139638478 139638482 TTCTT - COL22A1 Frame_Shift_Del p.K1223Rfs*86 0.36 TCGA-B4-5377-01 8 145275539 145275539 C T MROH1 Missense_Mutation p.S393F 0.40 deleterious(0) possibly_damaging(0.781) TCGA-B4-5377-01 8 17814231 17814231 G T PCM1 Nonsense_Mutation p.E531* 0.45 TCGA-B4-5377-01 8 17814232 17814232 A T PCM1 Missense_Mutation p.E531V 0.45 deleterious(0) possibly_damaging(0.903) TCGA-B4-5377-01 8 39114812 39114812 G A ADAM32 Silent p.R704R 0.04 TCGA-B4-5377-01 8 70981667 70981667 A G PRDM14 Silent p.C143C 0.28 TCGA-B4-5377-01 8 73480273 73480273 T A KCNB2 Missense_Mutation p.F102I 0.27 deleterious(0) probably_damaging(0.99) TCGA-B4-5377-01 9 117803275 117803275 G T TNC Silent p.I1779I 0.36 TCGA-B4-5377-01 9 96291967 96291967 T A FAM120A Intron 0.33 TCGA-B4-5377-01 X 12827407 12827407 G A PRPS2 Missense_Mutation p.A124T 0.36 tolerated(0.12) benign(0.19) TCGA-B4-5377-01 X 53426610 53426610 C T SMC1A Silent p.L821L 0.02 TCGA-B4-5377-01 X 66943799 66943799 T C AR 3'UTR 0.08 TCGA-B4-5832-01 10 17865198 17865198 G A MRC1L1 Missense_Mutation p.E63K 0.23 benign(0.207) TCGA-B4-5832-01 10 27537016 27537016 G T RP11-85G18.6 Intron 0.15 TCGA-B4-5832-01 10 8115874 8115874 C T GATA3 Missense_Mutation p.S408L 0.17 tolerated(0.37) benign(0.386) TCGA-B4-5832-01 11 108150300 108150300 G A ATM Missense_Mutation p.A1123T 0.12 deleterious(0.03) benign(0.028) TCGA-B4-5832-01 11 1097728 1097728 C G MUC2 Missense_Mutation p.P2274R 0.12 unknown(0) TCGA-B4-5832-01 11 3704554 3704554 C A NUP98 Missense_Mutation p.W1598C 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-B4-5832-01 11 47819982 47819982 C T NUP160 Missense_Mutation p.E977K 0.12 tolerated(0.08) probably_damaging(0.985) TCGA-B4-5832-01 12 111336801 111336811 AGACCTTGGAT - CCDC63 Frame_Shift_Del p.K405Tfs*16 0.21 TCGA-B4-5832-01 12 118598053 118598053 G - TAOK3 Frame_Shift_Del p.H750Qfs*5 0.16 TCGA-B4-5832-01 12 48375765 48375765 G T COL2A1 Intron 0.34 TCGA-B4-5832-01 12 48547183 48547183 G A ASB8 Missense_Mutation p.P33S 0.06 tolerated(0.32) probably_damaging(0.96) TCGA-B4-5832-01 12 64889519 64889519 A C TBK1 Missense_Mutation p.I562L 0.21 deleterious(0) probably_damaging(0.977) TCGA-B4-5832-01 12 88390202 88390202 C G C12orf50 Missense_Mutation p.A144P 0.05 tolerated(0.4) benign(0.005) TCGA-B4-5832-01 13 29002018 29002018 A G FLT1 Missense_Mutation p.Y383H 0.15 tolerated(0.17) probably_damaging(0.949) TCGA-B4-5832-01 14 102661411 102661411 T G WDR20 Missense_Mutation p.L129R 0.10 deleterious(0) benign(0.405) TCGA-B4-5832-01 14 104145868 104145868 G T KLC1 Missense_Mutation p.V546L 0.22 deleterious_low_confidence(0.05) benign(0.021) TCGA-B4-5832-01 14 77734858 77734858 C A NGB Missense_Mutation p.S91I 0.10 deleterious(0) probably_damaging(0.964) TCGA-B4-5832-01 15 90220708 90220708 T C PLIN1 Missense_Mutation p.K5E 0.04 deleterious(0) possibly_damaging(0.556) TCGA-B4-5832-01 16 57509512 57509512 G A DOK4 Silent p.V65V 0.17 TCGA-B4-5832-01 16 58030711 58030711 T G ZNF319 Missense_Mutation p.K487Q 0.22 tolerated(0.15) probably_damaging(0.996) TCGA-B4-5832-01 17 2228489 2228489 T A SRR 3'UTR 0.22 TCGA-B4-5832-01 17 2228490 2228490 C A SRR 3'UTR 0.22 TCGA-B4-5832-01 17 29645293 29645293 T A EVI2A 3'UTR 0.23 TCGA-B4-5832-01 17 33344616 33344616 G A RFFL Missense_Mutation p.H201Y 0.20 tolerated(0.38) benign(0.001) TCGA-B4-5832-01 17 41611247 41611247 G A ETV4 Silent p.G121G 0.13 TCGA-B4-5832-01 17 61767721 61767721 A C MAP3K3 Missense_Mutation p.E418D 0.06 deleterious(0.04) possibly_damaging(0.528) TCGA-B4-5832-01 19 2424138 2424138 C T TMPRSS9 Missense_Mutation p.A833V 0.33 deleterious(0) probably_damaging(0.978) TCGA-B4-5832-01 19 3728677 3728677 G A TJP3 Missense_Mutation p.V51M 0.17 deleterious(0) probably_damaging(0.995) TCGA-B4-5832-01 19 37677424 37677424 A - ZNF585B Frame_Shift_Del p.S339Pfs*31 0.18 TCGA-B4-5832-01 19 51274133 51274133 A G GPR32 Silent p.S92S 0.20 TCGA-B4-5832-01 19 5997191 5997191 G A RFX2 Silent p.S631S 0.24 TCGA-B4-5832-01 1 11188164 11188164 G C MTOR Missense_Mutation p.T1977R 0.25 deleterious(0) probably_damaging(0.991) TCGA-B4-5832-01 1 143912408 143912408 T C FAM72D 5'UTR 0.15 TCGA-B4-5832-01 1 149859298 149859298 C G HIST2H2AB Missense_Mutation p.E57Q 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-B4-5832-01 1 153318667 153318667 C T PGLYRP4 Missense_Mutation p.G17D 0.04 tolerated_low_confidence(0.1) benign(0.016) TCGA-B4-5832-01 1 161018367 161018367 C - ARHGAP30 Frame_Shift_Del p.G815Efs*42 0.15 TCGA-B4-5832-01 1 162381707 162381707 C T SH2D1B Missense_Mutation p.E34K 0.10 deleterious(0) probably_damaging(1) TCGA-B4-5832-01 1 211093085 211093085 C T KCNH1 Silent p.S453S 0.18 TCGA-B4-5832-01 1 214557324 214557324 C A PTPN14 Missense_Mutation p.S625I 0.16 deleterious(0) probably_damaging(0.997) TCGA-B4-5832-01 1 215799123 215799123 T G USH2A Nonstop_Mutation p.*5203Yext*8 0.11 TCGA-B4-5832-01 1 247593009 247593009 T C NLRP3 Missense_Mutation p.V760A 0.15 tolerated(0.11) benign(0.046) TCGA-B4-5832-01 1 248436253 248436253 G C OR2T33 Nonsense_Mutation p.Y288* 0.15 TCGA-B4-5832-01 1 27706478 27706478 C T CD164L2 3'UTR 0.28 TCGA-B4-5832-01 1 55119457 55119457 T A MROH7 Silent p.S286S 0.23 TCGA-B4-5832-01 20 35579886 35579886 A - SAMHD1 Frame_Shift_Del p.L54Pfs*12 0.22 TCGA-B4-5832-01 20 50329572 50329572 C T ATP9A Silent p.E123E 0.23 TCGA-B4-5832-01 20 60987771 60987771 C T RBBP8NL Silent p.T595T 0.08 TCGA-B4-5832-01 2 100019482 100019482 C T REV1 Missense_Mutation p.R1085K 0.05 tolerated(1) benign(0) TCGA-B4-5832-01 2 138771555 138771555 C G HNMT Missense_Mutation p.T245S 0.12 deleterious(0.01) possibly_damaging(0.617) TCGA-B4-5832-01 2 202438995 202438995 G T ALS2CR11 Silent p.V230V 0.15 TCGA-B4-5832-01 2 212615417 212615417 T C ERBB4 Missense_Mutation p.H190R 0.26 tolerated(0.17) benign(0.067) TCGA-B4-5832-01 2 55561665 55561665 T G CCDC88A Missense_Mutation p.E764D 0.13 deleterious(0.02) probably_damaging(0.978) TCGA-B4-5832-01 3 10183787 10183787 C A VHL Missense_Mutation p.P86T 0.29 deleterious(0) probably_damaging(0.999) TCGA-B4-5832-01 3 151171562 151171562 C T IGSF10 Missense_Mutation p.V109I 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-B4-5832-01 3 187386909 187386909 G T SST Silent p.R99R 0.09 TCGA-B4-5832-01 3 49699740 49699740 A G BSN Missense_Mutation p.M3488V 0.34 unknown(0) TCGA-B4-5832-01 3 52637711 52637712 - A PBRM1 Frame_Shift_Ins p.Q869Sfs*6 0.18 TCGA-B4-5832-01 3 52713603 52713603 G A PBRM1 Missense_Mutation p.P42L 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-B4-5832-01 4 1729915 1729915 A G TACC3 Silent p.G262G 0.23 TCGA-B4-5832-01 4 177632795 177632795 T G VEGFC Missense_Mutation p.I188L 0.14 tolerated(0.2) probably_damaging(0.998) TCGA-B4-5832-01 4 41687773 41687774 - GAT LIMCH1 In_Frame_Ins p.D955dup 0.15 TCGA-B4-5832-01 4 46314597 46314597 C A GABRA2 Missense_Mutation p.G131V 0.08 deleterious(0) probably_damaging(0.998) TCGA-B4-5832-01 4 77274325 77274325 T C CCDC158 Missense_Mutation p.E799G 0.18 deleterious(0.03) probably_damaging(0.986) TCGA-B4-5832-01 5 138994168 138994168 C A UBE2D2 Intron 0.09 TCGA-B4-5832-01 5 33937155 33937155 T C RXFP3 Missense_Mutation p.Y104H 0.12 tolerated(0.05) possibly_damaging(0.665) TCGA-B4-5832-01 5 49707089 49707089 G T EMB Missense_Mutation p.Q109K 0.17 tolerated(0.24) benign(0.021) TCGA-B4-5832-01 6 131958572 131958572 C T ENPP3 Silent p.N16N 0.08 TCGA-B4-5832-01 6 46826442 46826442 G A GPR116 Silent p.T1066T 0.10 TCGA-B4-5832-01 6 4935754 4935754 T C CDYL Missense_Mutation p.S233P 0.13 tolerated(0.08) benign(0.043) TCGA-B4-5832-01 6 49604371 49604371 G C RHAG Missense_Mutation p.P52R 0.16 deleterious(0) possibly_damaging(0.86) TCGA-B4-5832-01 6 55381307 55381307 G T HMGCLL1 Missense_Mutation p.A161D 0.10 deleterious(0) probably_damaging(0.939) TCGA-B4-5832-01 6 57013119 57013119 C T ZNF451 Silent p.L746L 0.06 TCGA-B4-5832-01 7 100875889 100875889 C T CLDN15 Missense_Mutation p.A193T 0.40 tolerated(0.52) benign(0.001) TCGA-B4-5832-01 7 117254766 117254766 T G CFTR Missense_Mutation p.L1156W 0.24 deleterious(0.02) probably_damaging(0.95) TCGA-B4-5832-01 7 138967976 138967976 G A UBN2 Silent p.A775A 0.15 TCGA-B4-5832-01 7 141536260 141536260 C T PRSS37 Missense_Mutation p.V215I 0.07 tolerated(0.63) benign(0.228) TCGA-B4-5832-01 7 149497464 149497464 C T SSPO RNA 0.26 TCGA-B4-5832-01 7 28848987 28848987 G C CREB5 Missense_Mutation p.E404Q 0.18 deleterious(0.04) unknown(0) TCGA-B4-5832-01 7 73526304 73526310 CTCCCAC - LIMK1 Frame_Shift_Del p.N462Kfs*57 0.17 TCGA-B4-5832-01 7 80091851 80091851 G C GNAT3 Silent p.A229A 0.27 TCGA-B4-5832-01 7 8790743 8790743 T C NXPH1 Missense_Mutation p.S54P 0.09 tolerated(0.15) probably_damaging(0.994) TCGA-B4-5832-01 7 94051239 94051239 G A COL1A2 Missense_Mutation p.G793E 0.22 unknown(0) TCGA-B4-5832-01 8 113697846 113697846 G T CSMD3 Missense_Mutation p.S757R 0.10 deleterious(0) probably_damaging(0.991) TCGA-B4-5832-01 8 143960507 143960507 G A CYP11B1 Silent p.S112S 0.38 TCGA-B4-5832-01 8 3216673 3216673 C A CSMD1 Splice_Site p.X1102_splice 0.06 TCGA-B4-5832-01 9 125239867 125239875 GAAACTGTC - OR1J1 In_Frame_Del p.D111_F113del 0.28 TCGA-B4-5832-01 9 125289274 125289274 T C OR1N1 Missense_Mutation p.Y100C 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-B4-5832-01 9 38615607 38615607 A C ANKRD18A Missense_Mutation p.I160S 0.19 deleterious(0) possibly_damaging(0.581) TCGA-B4-5832-01 X 135080342 135080342 A C SLC9A6 Silent p.R201R 0.46 TCGA-B4-5832-01 X 144904214 144904214 C T SLITRK2 Missense_Mutation p.L91F 0.05 deleterious(0) probably_damaging(1) TCGA-B4-5832-01 X 70147194 70147194 G A SLC7A3 Silent p.D408D 0.30 TCGA-B4-5832-01 X 90691444 90691444 C G PABPC5 Missense_Mutation p.R290G 0.38 deleterious(0.01) benign(0.212) TCGA-B4-5834-01 10 61832058 61832058 T G ANK3 Missense_Mutation p.T2861P 0.21 benign(0) TCGA-B4-5834-01 11 124266451 124266451 G A OR8B3 Missense_Mutation p.S266F 0.07 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-B4-5834-01 11 128709679 128709679 A C KCNJ1 Missense_Mutation p.F173V 0.28 deleterious(0) probably_damaging(0.995) TCGA-B4-5834-01 12 124094530 124094530 G A DDX55 Missense_Mutation p.G199D 0.20 deleterious(0) probably_damaging(0.999) TCGA-B4-5834-01 14 65210037 65210037 G A PLEKHG3 Silent p.S1036S 0.09 TCGA-B4-5834-01 14 93650300 93650301 - G MOAP1 Frame_Shift_Ins p.D97* 0.22 TCGA-B4-5834-01 14 95910939 95910939 A G SYNE3 Silent p.F553F 0.17 TCGA-B4-5834-01 15 40682113 40682113 G T KNSTRN Missense_Mutation p.S223I 0.15 deleterious(0) probably_damaging(0.923) TCGA-B4-5834-01 16 12145807 12145807 G T SNX29 Missense_Mutation p.K284N 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.685) TCGA-B4-5834-01 17 10321989 10321989 C A MYH8 Missense_Mutation p.D162Y 0.30 deleterious(0) probably_damaging(0.931) TCGA-B4-5834-01 17 53026926 53026926 A G TOM1L1 Silent p.Q410Q 0.16 TCGA-B4-5834-01 17 60484489 60484492 GCAG - EFCAB3 Frame_Shift_Del p.M313Ifs*3 0.17 TCGA-B4-5834-01 18 77477556 77477556 C G CTDP1 Missense_Mutation p.A697G 0.28 tolerated(0.06) possibly_damaging(0.572) TCGA-B4-5834-01 19 10870429 10870429 C G DNM2 Silent p.R59R 0.03 TCGA-B4-5834-01 19 12188222 12188222 T C ZNF844 3'UTR 0.20 TCGA-B4-5834-01 19 12881984 12881984 C T HOOK2 Silent p.E250E 0.36 TCGA-B4-5834-01 19 14088854 14088854 G C RFX1 Missense_Mutation p.S293R 0.18 deleterious(0.01) possibly_damaging(0.717) TCGA-B4-5834-01 19 19121013 19121013 G A SUGP2 Silent p.Y663Y 0.13 TCGA-B4-5834-01 19 47278897 47278897 A T SLC1A5 Missense_Mutation p.I499K 0.19 tolerated(0.55) benign(0.104) TCGA-B4-5834-01 1 113460112 113460112 C T SLC16A1 Missense_Mutation p.A306T 0.06 deleterious(0) probably_damaging(0.939) TCGA-B4-5834-01 1 116937892 116937892 A T ATP1A1 Silent p.R607R 0.24 TCGA-B4-5834-01 1 162740113 162740113 G A DDR2 Missense_Mutation p.D439N 0.10 tolerated(0.08) possibly_damaging(0.786) TCGA-B4-5834-01 1 205767924 205767924 G A SLC41A1 Silent p.V239V 0.27 TCGA-B4-5834-01 1 243328761 243328761 A G CEP170 Missense_Mutation p.V834A 0.54 deleterious(0) probably_damaging(0.997) TCGA-B4-5834-01 1 26288479 26288479 C A PAFAH2 3'UTR 0.29 TCGA-B4-5834-01 1 33252023 33252023 T C YARS Silent p.K282K 0.27 TCGA-B4-5834-01 1 44685108 44685108 C A DMAP1 Missense_Mutation p.P313T 0.40 tolerated(0.06) possibly_damaging(0.734) TCGA-B4-5834-01 1 6527466 6527466 G A PLEKHG5 3'Flank 0.08 TCGA-B4-5834-01 21 35122607 35122607 T C ITSN1 Missense_Mutation p.L169P 0.27 deleterious(0.02) unknown(0) TCGA-B4-5834-01 22 17071901 17071901 G T CCT8L2 Missense_Mutation p.L514I 0.03 deleterious(0.02) probably_damaging(1) TCGA-B4-5834-01 2 170062051 170062051 G A LRP2 Silent p.V2551V 0.05 TCGA-B4-5834-01 2 176835534 176835534 T C KIAA1715 Splice_Site p.X106_splice 0.19 TCGA-B4-5834-01 3 151166433 151166433 T A IGSF10 Missense_Mutation p.S446C 0.28 deleterious(0) possibly_damaging(0.844) TCGA-B4-5834-01 3 46563140 46563140 C T LRRC2 Missense_Mutation p.S313N 0.33 tolerated(0.52) benign(0.015) TCGA-B4-5834-01 4 76882456 76882456 T C SDAD1 Missense_Mutation p.N396S 0.26 deleterious(0.02) possibly_damaging(0.555) TCGA-B4-5834-01 6 144844257 144844257 A T UTRN Nonsense_Mutation p.R1947* 0.23 TCGA-B4-5834-01 6 33170811 33170811 C T SLC39A7 Silent p.V355V 0.24 TCGA-B4-5834-01 7 31682489 31682489 T C CCDC129 Missense_Mutation p.M528T 0.19 tolerated(0.42) benign(0.02) TCGA-B4-5834-01 7 50742130 50742130 T C GRB10 Intron 0.20 TCGA-B4-5834-01 7 6042153 6042153 T A PMS2 Silent p.T156T 0.30 TCGA-B4-5834-01 9 117355 117355 A G FOXD4 Silent p.P255P 0.38 TCGA-B4-5834-01 9 130860831 130860831 C A SLC25A25 Intron 0.28 TCGA-B4-5834-01 9 140110192 140110192 G A NDOR1 Missense_Mutation p.G457E 0.05 deleterious(0) probably_damaging(1) TCGA-B4-5835-01 10 102709854 102709854 C T FAM178A Missense_Mutation p.L1048F 0.19 deleterious(0) probably_damaging(0.935) TCGA-B4-5835-01 10 123987406 123987406 T C TACC2 Silent p.H2593H 0.25 TCGA-B4-5835-01 10 25313297 25313297 C T THNSL1 Missense_Mutation p.T382I 0.17 deleterious(0) probably_damaging(1) TCGA-B4-5835-01 10 27355434 27355434 T - ANKRD26 Frame_Shift_Del p.E417Dfs*21 0.27 TCGA-B4-5835-01 10 54042044 54042044 G - PRKG1 Frame_Shift_Del p.G560Efs*3 0.21 TCGA-B4-5835-01 10 92679010 92679010 G A ANKRD1 Silent p.L75L 0.26 TCGA-B4-5835-01 10 97423820 97423820 T A TCTN3 3'UTR 0.26 TCGA-B4-5835-01 10 99130679 99130679 C - RRP12 Splice_Site p.X834_splice 0.26 TCGA-B4-5835-01 11 102575298 102575298 G A MMP27 Missense_Mutation p.P104L 0.23 deleterious(0) probably_damaging(1) TCGA-B4-5835-01 11 118771969 118771969 A T BCL9L Missense_Mutation p.V828E 0.26 benign(0.012) TCGA-B4-5835-01 11 17464293 17464293 G A ABCC8 Missense_Mutation p.A535V 0.28 deleterious(0.04) benign(0.063) TCGA-B4-5835-01 11 2606480 2606480 G T KCNQ1 Missense_Mutation p.Q357H 0.15 deleterious(0) possibly_damaging(0.688) TCGA-B4-5835-01 11 7064624 7064624 A C NLRP14 Missense_Mutation p.D456A 0.17 deleterious(0.03) benign(0.382) TCGA-B4-5835-01 11 74563054 74563054 G T XRRA1 Missense_Mutation p.P407H 0.07 deleterious(0) probably_damaging(1) TCGA-B4-5835-01 12 40715952 40715952 C G LRRK2 Missense_Mutation p.F1762L 0.19 tolerated(0.06) benign(0.009) TCGA-B4-5835-01 12 57648881 57648881 A G R3HDM2 Missense_Mutation p.L869P 0.18 deleterious(0) probably_damaging(0.999) TCGA-B4-5835-01 12 6094833 6094833 T C VWF Splice_Site p.X2267_splice 0.23 TCGA-B4-5835-01 12 71078029 71078029 C A PTPRR Nonsense_Mutation p.E459* 0.23 TCGA-B4-5835-01 13 44456457 44456457 G T LACC1 Silent p.A233A 0.07 TCGA-B4-5835-01 13 86369824 86369824 C A SLITRK6 Nonsense_Mutation p.E274* 0.38 TCGA-B4-5835-01 14 22315163 22315163 A - TRAV8-2 Frame_Shift_Del p.G35Efs*6 0.22 TCGA-B4-5835-01 15 22473127 22473127 G T IGHV4OR15-8 Silent p.I48I 0.10 TCGA-B4-5835-01 15 52161504 52161504 C A TMOD3 Missense_Mutation p.L73M 0.18 deleterious(0) probably_damaging(0.987) TCGA-B4-5835-01 15 63961829 63961829 G T HERC1 Missense_Mutation p.S2705Y 0.10 possibly_damaging(0.723) TCGA-B4-5835-01 15 66249960 66249960 C A MEGF11 Missense_Mutation p.Q404H 0.38 deleterious(0.01) possibly_damaging(0.489) TCGA-B4-5835-01 16 20334206 20334206 C T GP2 Missense_Mutation p.D214N 0.17 tolerated(0.39) benign(0.003) TCGA-B4-5835-01 16 20999308 20999308 A G DNAH3 Silent p.I2227I 0.14 TCGA-B4-5835-01 16 67478511 67478511 C T ATP6V0D1 Missense_Mutation p.S134N 0.23 tolerated(0.31) benign(0.03) TCGA-B4-5835-01 16 815130 815130 G A MSLN Silent p.L177L 0.62 TCGA-B4-5835-01 17 41002100 41002100 A G AOC2 Missense_Mutation p.D669G 0.58 deleterious(0) probably_damaging(1) TCGA-B4-5835-01 17 66878093 66878093 C A ABCA8 Missense_Mutation p.R1246L 0.12 deleterious(0.03) benign(0.188) TCGA-B4-5835-01 17 79875967 79875967 G A SIRT7 Missense_Mutation p.A14V 0.59 tolerated(0.09) benign(0.005) TCGA-B4-5835-01 19 10431728 10431728 G - RAVER1 Frame_Shift_Del p.P507Lfs*17 0.33 TCGA-B4-5835-01 19 33149883 33149883 G T ANKRD27 Missense_Mutation p.F13L 0.06 deleterious(0) benign(0.153) TCGA-B4-5835-01 19 43439634 43439634 C A PSG7 Nonsense_Mutation p.G118* 0.22 TCGA-B4-5835-01 19 58596705 58596705 C T ZSCAN18 Missense_Mutation p.E350K 0.17 deleterious(0.03) benign(0.175) TCGA-B4-5835-01 19 6853974 6853974 T G VAV1 Nonsense_Mutation p.Y783* 0.26 TCGA-B4-5835-01 19 831827 831827 C T AZU1 Nonsense_Mutation p.R236* 0.08 TCGA-B4-5835-01 19 9296949 9296949 G A OR7D2 Missense_Mutation p.M164I 0.19 deleterious_low_confidence(0.03) benign(0.009) TCGA-B4-5835-01 1 10364544 10364544 T A KIF1B Intron 0.42 TCGA-B4-5835-01 1 117307204 117307204 A - CD2 Frame_Shift_Del p.K239Nfs*18 0.19 TCGA-B4-5835-01 1 146397414 146397414 C A NBPF12 Missense_Mutation p.F77L 0.15 benign(0.302) TCGA-B4-5835-01 1 150208177 150208177 C A ANP32E 5'UTR 0.33 TCGA-B4-5835-01 1 155026908 155026908 G T ADAM15 Missense_Mutation p.A180S 0.24 tolerated(0.22) benign(0.028) TCGA-B4-5835-01 1 21584023 21584023 C A ECE1 Nonsense_Mutation p.E275* 0.08 TCGA-B4-5835-01 1 247614975 247614975 G T OR2B11 Missense_Mutation p.Q104K 0.24 deleterious(0) benign(0.182) TCGA-B4-5835-01 1 2530166 2530166 C A MMEL1 Missense_Mutation p.D369Y 0.27 tolerated(0.07) probably_damaging(0.951) TCGA-B4-5835-01 1 27745564 27745564 T C WASF2 Silent p.G52G 0.40 TCGA-B4-5835-01 1 28477382 28477382 C A PTAFR Nonsense_Mutation p.E51* 0.09 TCGA-B4-5835-01 1 52956411 52956411 G A ZCCHC11 Nonsense_Mutation p.R461* 0.21 TCGA-B4-5835-01 20 24523931 24523931 G A SYNDIG1 Silent p.R66R 0.29 TCGA-B4-5835-01 20 31292271 31292271 A C COMMD7 Missense_Mutation p.L150V 0.30 tolerated(0.08) benign(0.192) TCGA-B4-5835-01 21 30343590 30343590 T C LTN1 Intron 0.24 TCGA-B4-5835-01 22 46792575 46792575 G A CELSR1 Missense_Mutation p.R1924C 0.26 deleterious(0) possibly_damaging(0.836) TCGA-B4-5835-01 2 179433734 179433734 C A TTN Missense_Mutation p.D25709Y 0.16 TCGA-B4-5835-01 2 179447818 179447818 T A TTN Silent p.L21904L 0.14 TCGA-B4-5835-01 2 186673486 186673486 G A FSIP2 Missense_Mutation p.V6574I 0.05 benign(0.002) TCGA-B4-5835-01 2 220162639 220162639 C A PTPRN Missense_Mutation p.G619W 0.29 deleterious(0) probably_damaging(0.994) TCGA-B4-5835-01 2 27317365 27317365 G A KHK Missense_Mutation p.R77H 0.18 tolerated(0.09) benign(0.002) TCGA-B4-5835-01 3 10980053 10980053 A T SLC6A11 Missense_Mutation p.I622F 0.28 tolerated_low_confidence(0.24) possibly_damaging(0.503) TCGA-B4-5835-01 3 132401619 132401619 T - NPHP3 Frame_Shift_Del p.K1247Rfs*18 0.17 TCGA-B4-5835-01 3 137886050 137886050 A - DBR1 Frame_Shift_Del p.F196Sfs*10 0.14 TCGA-B4-5835-01 3 142177883 142177883 C T ATR Missense_Mutation p.G2474R 0.31 deleterious(0) probably_damaging(1) TCGA-B4-5835-01 3 47163797 47163797 C A SETD2 Nonsense_Mutation p.E777* 0.10 TCGA-B4-5835-01 3 47164447 47164447 G T SETD2 Nonsense_Mutation p.S560* 0.27 TCGA-B4-5835-01 4 155533709 155533709 A T FGG Nonsense_Mutation p.L18* 0.25 TCGA-B4-5835-01 5 141248675 141248675 C T PCDH1 Missense_Mutation p.R121H 0.22 tolerated(0.12) probably_damaging(0.909) TCGA-B4-5835-01 5 72801044 72801047 CCAA - BTF3 Frame_Shift_Del p.S201* 0.31 TCGA-B4-5835-01 6 152784523 152784523 C A SYNE1 Missense_Mutation p.G688W 0.40 probably_damaging(0.99) TCGA-B4-5835-01 6 158483043 158483043 G T SYNJ2 Missense_Mutation p.C325F 0.06 tolerated(0.21) benign(0.008) TCGA-B4-5835-01 7 100859716 100859716 C A PLOD3 Missense_Mutation p.D105Y 0.19 deleterious(0) possibly_damaging(0.832) TCGA-B4-5835-01 7 134642982 134642982 C A CALD1 Missense_Mutation p.Q668K 0.04 tolerated_low_confidence(0.15) benign(0.228) TCGA-B4-5835-01 7 139164916 139164916 T A KLRG2 Missense_Mutation p.I279F 0.38 deleterious(0.04) possibly_damaging(0.449) TCGA-B4-5835-01 7 57188556 57188556 T G ZNF479 Missense_Mutation p.K189T 0.19 deleterious(0.01) possibly_damaging(0.493) TCGA-B4-5835-01 7 86536993 86536993 C G KIAA1324L Missense_Mutation p.V851L 0.05 tolerated(0.96) benign(0.008) TCGA-B4-5835-01 8 144991469 144991469 G A PLEC Nonsense_Mutation p.Q4311* 0.27 TCGA-B4-5835-01 8 144991470 144991470 C T PLEC Silent p.E4310E 0.27 TCGA-B4-5835-01 9 79985485 79985485 C T VPS13A Silent p.G2966G 0.18 TCGA-B4-5835-01 X 100104890 100104890 A T NOX1 Missense_Mutation p.S389R 0.14 deleterious(0.01) probably_damaging(1) TCGA-B4-5835-01 X 12938993 12938993 G T TLR8 Nonsense_Mutation p.E612* 0.07 TCGA-B4-5835-01 X 139865791 139865791 C G CDR1 Missense_Mutation p.W247C 0.22 deleterious(0.01) possibly_damaging(0.878) TCGA-B4-5835-01 X 153070051 153070051 C T PDZD4 Missense_Mutation p.R356H 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-B4-5835-01 X 17771587 17771587 C A SCML1 3'UTR 0.18 TCGA-B4-5835-01 X 18822154 18822154 G T PPEF1 Nonsense_Mutation p.E404* 0.16 TCGA-B4-5835-01 X 35993323 35993323 C A CXorf22 Missense_Mutation p.H772N 0.18 tolerated(0.12) possibly_damaging(0.624) TCGA-B4-5835-01 X 63410669 63410669 T A AMER1 Missense_Mutation p.D833V 0.52 tolerated(0.08) benign(0.172) TCGA-B4-5835-01 X 91133613 91133613 G A PCDH11X Missense_Mutation p.A792T 0.22 tolerated(1) benign(0.002) TCGA-B4-5836-01 10 135123289 135123289 G A ZNF511 Silent p.A79A 0.32 TCGA-B4-5836-01 10 15120706 15120706 T A ACBD7 Silent p.A59A 0.06 TCGA-B4-5836-01 10 20465934 20465936 GAA - PLXDC2 In_Frame_Del p.R299del 0.20 TCGA-B4-5836-01 10 88230780 88230780 A G WAPAL Missense_Mutation p.F704S 0.18 deleterious(0) probably_damaging(0.997) TCGA-B4-5836-01 10 96099569 96099569 A C NOC3L Missense_Mutation p.L630R 0.22 deleterious(0) probably_damaging(0.999) TCGA-B4-5836-01 11 122775925 122775925 T C C11orf63 Intron 0.04 TCGA-B4-5836-01 11 14991621 14991621 C T CALCA Silent p.R29R 0.12 TCGA-B4-5836-01 11 1501649 1501649 C T MOB2 Silent p.T113T 0.14 TCGA-B4-5836-01 11 46726525 46726525 A T ZNF408 Missense_Mutation p.K425N 0.12 deleterious(0.01) possibly_damaging(0.66) TCGA-B4-5836-01 11 76171050 76171050 A G C11orf30 Silent p.A164A 0.20 TCGA-B4-5836-01 11 96116619 96116619 A C CCDC82 Missense_Mutation p.C269G 0.20 tolerated(0.05) benign(0.036) TCGA-B4-5836-01 12 114836387 114836387 T G TBX5 Silent p.P167P 0.21 TCGA-B4-5836-01 12 4430429 4430429 T C C12orf5 5'UTR 0.04 TCGA-B4-5836-01 12 52100421 52100421 G C SCN8A Missense_Mutation p.E519D 0.25 tolerated(0.28) benign(0.05) TCGA-B4-5836-01 12 55421030 55421030 G C NEUROD4 Silent p.G269G 0.19 TCGA-B4-5836-01 12 64202742 64202742 C A TMEM5 Missense_Mutation p.T401N 0.17 tolerated(0.57) benign(0.001) TCGA-B4-5836-01 12 81671129 81671129 T C PPFIA2 Missense_Mutation p.R1093G 0.27 deleterious(0) benign(0.151) TCGA-B4-5836-01 13 28750672 28750672 A T PAN3 Missense_Mutation p.S199C 0.06 deleterious_low_confidence(0.03) benign(0.013) TCGA-B4-5836-01 13 38266346 38266346 C A TRPC4 Missense_Mutation p.V342F 0.14 tolerated(0.25) benign(0.017) TCGA-B4-5836-01 14 20585784 20585784 C A OR4K17 Missense_Mutation p.N73K 0.04 deleterious(0) probably_damaging(1) TCGA-B4-5836-01 14 23886884 23886884 G A MYH7 Missense_Mutation p.A1394V 0.17 tolerated(0.11) possibly_damaging(0.804) TCGA-B4-5836-01 15 42169539 42169539 G C SPTBN5 Missense_Mutation p.D1162E 0.20 benign(0.002) TCGA-B4-5836-01 15 90126125 90126125 T A TICRR Nonsense_Mutation p.L288* 0.27 TCGA-B4-5836-01 16 700677 700677 A G WDR90 Missense_Mutation p.N176S 0.14 tolerated(0.14) probably_damaging(0.996) TCGA-B4-5836-01 17 12642618 12642618 C T MYOCD Silent p.T230T 0.16 TCGA-B4-5836-01 17 1577101 1577101 T A PRPF8 Missense_Mutation p.N1129Y 0.21 deleterious(0.01) probably_damaging(0.933) TCGA-B4-5836-01 17 34174079 34174079 G T TAF15 3'UTR 0.18 TCGA-B4-5836-01 17 39535273 39535273 G A KRT34 Silent p.D386D 0.16 TCGA-B4-5836-01 17 42148528 42148528 G A G6PC3 Silent p.E65E 0.17 TCGA-B4-5836-01 17 49353345 49353345 T A UTP18 Missense_Mutation p.L277Q 0.12 deleterious(0) probably_damaging(0.979) TCGA-B4-5836-01 17 74716493 74716493 G A JMJD6 Silent p.S343S 0.28 TCGA-B4-5836-01 17 8732128 8732128 C T PIK3R6 Missense_Mutation p.G357S 0.08 tolerated(0.91) benign(0.009) TCGA-B4-5836-01 18 2544671 2544671 T A METTL4 Nonsense_Mutation p.K388* 0.28 TCGA-B4-5836-01 18 2931293 2931293 G A LPIN2 Missense_Mutation p.L473F 0.08 deleterious(0) probably_damaging(0.946) TCGA-B4-5836-01 18 32822516 32822516 G T ZNF397 Missense_Mutation p.D28Y 0.12 deleterious(0) possibly_damaging(0.526) TCGA-B4-5836-01 19 19758234 19758234 G A ATP13A1 Missense_Mutation p.S966F 0.22 deleterious(0) probably_damaging(0.966) TCGA-B4-5836-01 19 33471132 33471132 T A RHPN2 Missense_Mutation p.M611L 0.15 tolerated(0.76) benign(0.005) TCGA-B4-5836-01 19 33471138 33471138 C G RHPN2 Missense_Mutation p.V609L 0.14 tolerated(0.73) benign(0.024) TCGA-B4-5836-01 19 41888745 41888745 C T TMEM91 Silent p.H93H 0.21 TCGA-B4-5836-01 19 44377272 44377272 C T ZNF404 Missense_Mutation p.C365Y 0.28 tolerated(0.51) benign(0.003) TCGA-B4-5836-01 19 46268862 46268862 A G SIX5 Missense_Mutation p.L706P 0.27 deleterious(0) probably_damaging(0.997) TCGA-B4-5836-01 1 11217289 11217289 A G MTOR Silent p.Y1463Y 0.15 TCGA-B4-5836-01 1 11708693 11708693 T C FBXO2 3'UTR 0.25 TCGA-B4-5836-01 1 12336924 12336926 GAT - VPS13D In_Frame_Del p.M1094del 0.24 TCGA-B4-5836-01 1 152277450 152277450 G T FLG Silent p.S3304S 0.21 TCGA-B4-5836-01 1 185112523 185112523 T - TRMT1L Frame_Shift_Del p.K275Nfs*6 0.17 TCGA-B4-5836-01 1 207222971 207222971 A G YOD1 Silent p.P147P 0.20 TCGA-B4-5836-01 1 234742916 234742916 T A IRF2BP2 Silent p.G577G 0.28 TCGA-B4-5836-01 1 248343458 248343458 C A OR2M2 Silent p.T57T 0.20 TCGA-B4-5836-01 1 33116038 33116038 G T ZBTB8OS Nonsense_Mutation p.Y43* 0.16 TCGA-B4-5836-01 1 3789056 3789056 C A DFFB Missense_Mutation p.S234R 0.24 tolerated(0.32) benign(0.017) TCGA-B4-5836-01 1 45479706 45479706 C T UROD Silent p.V200V 0.20 TCGA-B4-5836-01 20 42935219 42935219 A - FITM2 3'UTR 0.23 TCGA-B4-5836-01 20 45618709 45618709 G C EYA2 Silent p.L20L 0.19 TCGA-B4-5836-01 22 26873048 26873048 A T HPS4 Missense_Mutation p.C63S 0.20 deleterious(0) probably_damaging(1) TCGA-B4-5836-01 22 35812725 35812725 A G MCM5 Missense_Mutation p.N503S 0.27 deleterious(0) possibly_damaging(0.835) TCGA-B4-5836-01 22 40417856 40417856 A - FAM83F Frame_Shift_Del p.K448Rfs*23 0.14 TCGA-B4-5836-01 2 172300079 172300079 A C DCAF17 Missense_Mutation p.K93Q 0.21 deleterious(0.02) possibly_damaging(0.566) TCGA-B4-5836-01 2 25463523 25463523 C G DNMT3A Missense_Mutation p.R720P 0.20 deleterious(0) probably_damaging(0.997) TCGA-B4-5836-01 2 25972716 25972716 G C ASXL2 Missense_Mutation p.S570C 0.16 deleterious(0.04) possibly_damaging(0.77) TCGA-B4-5836-01 2 73303217 73303217 A T RAB11FIP5 Missense_Mutation p.S554R 0.15 deleterious(0.01) probably_damaging(0.955) TCGA-B4-5836-01 2 97024792 97024792 G A NCAPH Missense_Mutation p.M406I 0.36 tolerated(0.35) benign(0.001) TCGA-B4-5836-01 3 10183734 10183734 C A VHL Nonsense_Mutation p.S68* 0.36 TCGA-B4-5836-01 3 121647902 121647903 - T SLC15A2 Frame_Shift_Ins p.L473Ffs*6 0.21 TCGA-B4-5836-01 3 170846555 170846555 C - TNIK Frame_Shift_Del p.S574Mfs*23 0.15 TCGA-B4-5836-01 3 52613209 52613209 C A PBRM1 Nonsense_Mutation p.E1107* 0.33 TCGA-B4-5836-01 3 58381438 58381438 G - PXK Frame_Shift_Del p.G259Afs*7 0.20 TCGA-B4-5836-01 4 177050013 177050013 T C WDR17 Splice_Site p.X329_splice 0.24 TCGA-B4-5836-01 4 183714515 183714515 C T TENM3 Silent p.D2230D 0.07 TCGA-B4-5836-01 4 23816122 23816122 T A PPARGC1A Silent p.S328S 0.23 TCGA-B4-5836-01 4 2826453 2826453 G A SH3BP2 Missense_Mutation p.R175H 0.11 deleterious(0) possibly_damaging(0.863) TCGA-B4-5836-01 4 367638 367638 A G ZNF141 Missense_Mutation p.K471R 0.20 tolerated(1) benign(0.001) TCGA-B4-5836-01 5 139003010 139003010 C T UBE2D2 Missense_Mutation p.P121L 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.625) TCGA-B4-5836-01 5 145836770 145836770 A G TCERG1 Missense_Mutation p.M104V 0.21 tolerated(0.56) benign(0.019) TCGA-B4-5836-01 5 148687091 148687091 G A AFAP1L1 Missense_Mutation p.C221Y 0.26 deleterious(0) possibly_damaging(0.892) TCGA-B4-5836-01 5 148687092 148687092 C T AFAP1L1 Silent p.C221C 0.27 TCGA-B4-5836-01 5 171766891 171766891 C - SH3PXD2B Frame_Shift_Del p.W406Cfs*39 0.15 TCGA-B4-5836-01 6 35838125 35838125 T C SRPK1 Silent p.E308E 0.22 TCGA-B4-5836-01 6 38142689 38142689 C T BTBD9 3'UTR 0.19 TCGA-B4-5836-01 6 52699031 52699031 G C GSTA5 Missense_Mutation p.L108V 0.18 tolerated(0.81) benign(0.001) TCGA-B4-5836-01 7 117176679 117176679 C T CFTR Missense_Mutation p.A274V 0.10 tolerated(0.7) benign(0.172) TCGA-B4-5836-01 7 150555947 150555947 A G AOC1 Missense_Mutation p.Q556R 0.25 tolerated(0.98) benign(0.002) TCGA-B4-5836-01 7 47814709 47814709 G A PKD1L1 3'UTR 0.17 TCGA-B4-5836-01 7 97874215 97874215 A G TECPR1 Silent p.G130G 0.22 TCGA-B4-5836-01 8 104444929 104444929 A G DCAF13 Missense_Mutation p.M401V 0.18 deleterious(0.01) possibly_damaging(0.535) TCGA-B4-5836-01 9 128099797 128099797 T - GAPVD1 Frame_Shift_Del p.I962Mfs*172 0.19 TCGA-B4-5836-01 9 128246809 128246810 CT - MAPKAP1 Frame_Shift_Del p.V374Tfs*5 0.13 TCGA-B4-5836-01 9 136212036 136212036 G C MED22 Silent p.A65A 0.14 TCGA-B4-5836-01 9 17466109 17466109 A - CNTLN Frame_Shift_Del p.K1223Rfs*8 0.16 TCGA-B4-5836-01 9 86530206 86530206 T C KIF27 Intron 0.28 TCGA-B4-5836-01 9 95279802 95279802 C G ECM2 Intron 0.40 TCGA-B4-5836-01 X 101911485 101911487 GAA - GPRASP1 In_Frame_Del p.E884del 0.21 TCGA-B4-5836-01 X 134978476 134978476 A C SAGE1 Silent p.T25T 0.22 TCGA-B4-5836-01 X 37026817 37026817 C T FAM47C Missense_Mutation p.P112S 0.15 tolerated(0.12) possibly_damaging(0.631) TCGA-B4-5836-01 X 70345894 70345894 G A MED12 Missense_Mutation p.D811N 0.04 benign(0.026) TCGA-B4-5836-01 X 71813085 71813085 G C PHKA1 Missense_Mutation p.P1038A 0.21 tolerated(0.39) benign(0) TCGA-B4-5836-01 X 73745646 73745646 T C SLC16A2 Missense_Mutation p.I363T 0.06 tolerated(0.05) possibly_damaging(0.834) TCGA-B4-5838-01 10 105990520 105990520 T C WDR96 Missense_Mutation p.I49M 0.28 deleterious(0.01) possibly_damaging(0.8) TCGA-B4-5838-01 10 128974642 128974642 G T FAM196A Silent p.T6T 0.19 TCGA-B4-5838-01 11 117789550 117789550 C T TMPRSS13 Missense_Mutation p.A9T 0.07 tolerated_low_confidence(0.21) benign(0) TCGA-B4-5838-01 11 123597460 123597460 C T ZNF202 Missense_Mutation p.D398N 0.34 tolerated(0.5) benign(0.002) TCGA-B4-5838-01 11 128680431 128680431 G A FLI1 Missense_Mutation p.E303K 0.42 deleterious(0) probably_damaging(0.997) TCGA-B4-5838-01 11 22770733 22770733 G A GAS2 Missense_Mutation p.A181T 0.11 tolerated(0.6) benign(0.001) TCGA-B4-5838-01 11 26692479 26692479 G A SLC5A12 3'UTR 0.30 TCGA-B4-5838-01 11 36511852 36511852 C T TRAF6 Missense_Mutation p.E369K 0.19 tolerated(0.77) probably_damaging(0.994) TCGA-B4-5838-01 11 47463274 47463274 G T RAPSN Silent p.P267P 0.09 TCGA-B4-5838-01 11 62291579 62291579 C G AHNAK Missense_Mutation p.G3437A 0.21 benign(0.364) TCGA-B4-5838-01 11 73071410 73071410 G C ARHGEF17 Missense_Mutation p.D1418H 0.14 deleterious(0.01) possibly_damaging(0.898) TCGA-B4-5838-01 12 110511326 110511326 C T C12orf76 5'UTR 0.38 TCGA-B4-5838-01 12 56101360 56101360 A G ITGA7 Missense_Mutation p.L36P 0.22 deleterious(0) probably_damaging(1) TCGA-B4-5838-01 12 57409500 57409500 C A TAC3 Nonsense_Mutation p.E28* 0.26 TCGA-B4-5838-01 12 7510009 7510009 G A CD163L1 Silent p.A1451A 0.27 TCGA-B4-5838-01 13 27828378 27828378 A T RPL21 Missense_Mutation p.Y30F 0.12 tolerated(0.09) possibly_damaging(0.85) TCGA-B4-5838-01 13 29001360 29001360 C T FLT1 Missense_Mutation p.G458S 0.32 deleterious(0) probably_damaging(1) TCGA-B4-5838-01 14 20711760 20711760 A T OR11H4 Silent p.V270V 0.20 TCGA-B4-5838-01 14 74179538 74179538 C T PNMA1 Missense_Mutation p.E269K 0.31 deleterious(0) probably_damaging(0.992) TCGA-B4-5838-01 15 30026551 30026551 T C TJP1 Silent p.E481E 0.06 TCGA-B4-5838-01 15 83658795 83658795 G A FAM103A1 Silent p.Q111Q 0.08 TCGA-B4-5838-01 16 30198794 30198794 G A CORO1A Missense_Mutation p.S243N 0.15 tolerated(0.31) benign(0.205) TCGA-B4-5838-01 16 5040783 5040783 G A SEC14L5 Missense_Mutation p.E121K 0.33 tolerated(0.26) possibly_damaging(0.515) TCGA-B4-5838-01 16 70934923 70934923 T A HYDIN Missense_Mutation p.K3011M 0.22 probably_damaging(0.966) TCGA-B4-5838-01 16 70934968 70934968 C T HYDIN Missense_Mutation p.G2996D 0.23 benign(0.047) TCGA-B4-5838-01 16 840647 840647 C T CHTF18 Missense_Mutation p.T292M 0.13 tolerated(0.24) benign(0.052) TCGA-B4-5838-01 17 74278089 74278089 G A QRICH2 Silent p.I1207I 0.12 TCGA-B4-5838-01 17 74392603 74392603 G A UBE2O Silent p.D805D 0.03 TCGA-B4-5838-01 18 13826628 13826628 C T MC5R Silent p.S288S 0.27 TCGA-B4-5838-01 18 21470025 21470025 A G LAMA3 Missense_Mutation p.Q1785R 0.24 benign(0.02) TCGA-B4-5838-01 19 12429410 12429410 A C ZNF563 Nonstop_Mutation p.*477Gext*2 0.43 TCGA-B4-5838-01 19 14698466 14698467 - TT CLEC17A Frame_Shift_Ins p.S55Ffs*66 0.18 TCGA-B4-5838-01 19 3180057 3180057 C A S1PR4 3'UTR 0.13 TCGA-B4-5838-01 19 50118194 50118194 A - PRR12 Frame_Shift_Del p.N1652Mfs*8 0.22 TCGA-B4-5838-01 19 5455579 5455579 A G ZNRF4 Missense_Mutation p.H26R 0.20 tolerated_low_confidence(0.76) benign(0.014) TCGA-B4-5838-01 1 113661909 113661909 A T LRIG2 Missense_Mutation p.Y912F 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-B4-5838-01 1 151288321 151288321 C T PI4KB Missense_Mutation p.A225T 0.32 deleterious(0.02) probably_damaging(0.966) TCGA-B4-5838-01 1 155004243 155004243 C T DCST2 Silent p.R182R 0.12 TCGA-B4-5838-01 1 156521627 156521627 A G IQGAP3 Missense_Mutation p.L535P 0.29 deleterious(0) probably_damaging(0.984) TCGA-B4-5838-01 1 247875312 247875312 A G OR6F1 Missense_Mutation p.L249P 0.34 tolerated(0.05) probably_damaging(0.936) TCGA-B4-5838-01 20 31996301 31996301 A G SNTA1 3'UTR 0.36 TCGA-B4-5838-01 20 3728984 3728984 C A HSPA12B Missense_Mutation p.P266T 0.26 tolerated(0.42) benign(0.001) TCGA-B4-5838-01 20 56195380 56195380 G C ZBP1 5'UTR 0.44 TCGA-B4-5838-01 21 15858202 15858202 C G SAMSN1 3'UTR 0.36 TCGA-B4-5838-01 21 34012084 34012084 A - SYNJ1 Frame_Shift_Del p.P1238Lfs*21 0.23 TCGA-B4-5838-01 21 34136826 34136826 G T PAXBP1 Missense_Mutation p.P161H 0.39 tolerated(0.25) benign(0.19) TCGA-B4-5838-01 22 43972202 43972202 T G EFCAB6 Missense_Mutation p.Q1132P 0.30 deleterious(0) possibly_damaging(0.772) TCGA-B4-5838-01 22 46806460 46806460 T G CELSR1 Splice_Site p.X1590_splice 0.30 TCGA-B4-5838-01 2 128398541 128398547 TCACACT - LIMS2 Frame_Shift_Del p.K250Rfs*36 0.30 TCGA-B4-5838-01 2 136511791 136511791 A C UBXN4 Missense_Mutation p.I93L 0.28 tolerated(0.06) benign(0.057) TCGA-B4-5838-01 2 219825193 219825193 C T CDK5R2 Silent p.D217D 0.28 TCGA-B4-5838-01 2 231193481 231193481 C G SP140L Missense_Mutation p.N14K 0.25 tolerated_low_confidence(0.24) possibly_damaging(0.742) TCGA-B4-5838-01 2 90229367 90229367 G A IGKV1D-42 Missense_Mutation p.G63R 0.06 deleterious(0.01) probably_damaging(1) TCGA-B4-5838-01 2 96852379 96852379 T C STARD7 3'UTR 0.32 TCGA-B4-5838-01 2 96852390 96852390 T G STARD7 3'UTR 0.33 TCGA-B4-5838-01 2 99294822 99294822 G C MGAT4A Missense_Mutation p.F69L 0.26 tolerated(0.6) benign(0.007) TCGA-B4-5838-01 3 119155755 119155755 A C TMEM39A Missense_Mutation p.M332R 0.33 deleterious(0) probably_damaging(0.955) TCGA-B4-5838-01 3 192126075 192126075 G A FGF12 5'UTR 0.44 TCGA-B4-5838-01 3 53262142 53262142 G T TKT Missense_Mutation p.D509E 0.44 deleterious(0) probably_damaging(0.996) TCGA-B4-5838-01 4 140811971 140811971 G A MAML3 Missense_Mutation p.P207S 0.05 benign(0.265) TCGA-B4-5838-01 4 177241183 177241183 G A SPCS3 5'UTR 0.13 TCGA-B4-5838-01 4 68928956 68928956 C T TMPRSS11F Intron 0.34 TCGA-B4-5838-01 5 127484471 127484471 C T SLC12A2 Missense_Mutation p.P636L 0.17 deleterious(0) probably_damaging(1) TCGA-B4-5838-01 5 127653849 127653849 C A FBN2 Missense_Mutation p.G1570V 0.21 deleterious(0) probably_damaging(1) TCGA-B4-5838-01 5 140811159 140811159 G T PCDHGA12 Missense_Mutation p.R278M 0.27 tolerated_low_confidence(0.18) benign(0.006) TCGA-B4-5838-01 5 162910059 162910059 A G HMMR Silent p.L522L 0.19 TCGA-B4-5838-01 5 167922351 167922351 C G RARS Missense_Mutation p.A204G 0.25 deleterious(0) probably_damaging(1) TCGA-B4-5838-01 5 172197291 172197296 GAAAAC AAAAG DUSP1 Frame_Shift_Del p.S129Wfs*21 0.15 TCGA-B4-5838-01 5 173383171 173383171 C T CPEB4 3'UTR 0.17 TCGA-B4-5838-01 5 176684057 176684057 C A NSD1 Missense_Mutation p.P1624Q 0.26 deleterious(0) possibly_damaging(0.54) TCGA-B4-5838-01 5 34757654 34757654 G C RAI14 Missense_Mutation p.G43R 0.25 deleterious(0) probably_damaging(0.964) TCGA-B4-5838-01 5 44388667 44388667 G T FGF10 Missense_Mutation p.L40I 0.31 tolerated(0.37) benign(0.004) TCGA-B4-5838-01 6 119252784 119252784 A - MCM9 Frame_Shift_Del p.D35Efs*11 0.10 TCGA-B4-5838-01 6 17706532 17706532 G C NUP153 Nonsense_Mutation p.Y29* 0.37 TCGA-B4-5838-01 6 31938839 31938839 C T DXO Missense_Mutation p.G148S 0.26 deleterious(0.01) probably_damaging(1) TCGA-B4-5838-01 7 100485480 100485480 A G SRRT Missense_Mutation p.I776V 0.20 tolerated(0.3) benign(0) TCGA-B4-5838-01 7 101754986 101754986 A C CUX1 Missense_Mutation p.Q191P 0.18 deleterious(0) unknown(0) TCGA-B4-5838-01 7 127964664 127964664 C T RBM28 Silent p.T429T 0.27 TCGA-B4-5838-01 7 30951547 30951552 AGCTCT - AQP1 In_Frame_Del p.K8_F10delinsI 0.25 TCGA-B4-5838-01 7 44191996 44191996 C G GCK Silent p.L80L 0.20 TCGA-B4-5838-01 8 145730220 145730220 A G GPT Missense_Mutation p.R107G 0.25 deleterious(0) possibly_damaging(0.895) TCGA-B4-5838-01 8 17067900 17067900 A G ZDHHC2 Silent p.L287L 0.15 TCGA-B4-5838-01 8 21844736 21844736 T G XPO7 Missense_Mutation p.F554L 0.34 tolerated(0.91) benign(0.005) TCGA-B4-5838-01 8 3224564 3224564 G A CSMD1 Silent p.I1035I 0.25 TCGA-B4-5838-01 9 100367110 100367110 A T TSTD2 Missense_Mutation p.I384N 0.24 deleterious(0) probably_damaging(1) TCGA-B4-5838-01 9 100380108 100380108 G A TSTD2 Silent p.D178D 0.08 TCGA-B4-5838-01 9 130287400 130287400 C T FAM129B Missense_Mutation p.A120T 0.06 tolerated(0.18) probably_damaging(0.953) TCGA-B4-5838-01 9 134385344 134385344 C G POMT1 Silent p.V220V 0.35 TCGA-B4-5838-01 9 43625455 43625455 T C SPATA31A6 Missense_Mutation p.K1078E 0.14 tolerated(0.25) benign(0.001) TCGA-B4-5838-01 X 110996020 110996020 A G ALG13 Missense_Mutation p.T979A 0.50 tolerated(0.15) benign(0.098) TCGA-B4-5838-01 X 138644198 138644198 A C F9 Missense_Mutation p.N452H 0.49 tolerated(0.14) possibly_damaging(0.896) TCGA-B4-5838-01 X 153223256 153223256 C G HCFC1 Missense_Mutation p.G704R 0.57 deleterious(0) probably_damaging(0.996) TCGA-B4-5838-01 X 295006 295006 A G PPP2R3B 3'UTR 0.35 TCGA-B4-5843-01 10 44112775 44112775 T G ZNF485 Missense_Mutation p.H428Q 0.24 deleterious(0) probably_damaging(0.989) TCGA-B4-5843-01 11 17794252 17794252 G T KCNC1 Intron 0.42 TCGA-B4-5843-01 11 62744751 62744751 G T SLC22A6 Nonsense_Mutation p.Y490* 0.31 TCGA-B4-5843-01 11 71724426 71724426 C T NUMA1 Missense_Mutation p.A1375T 0.36 benign(0.019) TCGA-B4-5843-01 11 86125851 86125851 A T CCDC81 Missense_Mutation p.K471I 0.41 deleterious(0) possibly_damaging(0.908) TCGA-B4-5843-01 11 99932125 99932125 A T CNTN5 Missense_Mutation p.T388S 0.37 tolerated(0.06) benign(0.025) TCGA-B4-5843-01 12 49722758 49722758 C - TROAP Frame_Shift_Del p.L315Cfs*26 0.29 TCGA-B4-5843-01 12 91497860 91497860 T G LUM 3'UTR 0.32 TCGA-B4-5843-01 12 99019997 99019997 G A IKBIP Missense_Mutation p.S282F 0.18 deleterious(0) probably_damaging(1) TCGA-B4-5843-01 13 100617841 100617841 T C ZIC5 Silent p.P594P 0.41 TCGA-B4-5843-01 14 24793333 24793333 C T ADCY4 Missense_Mutation p.G661R 0.58 tolerated(0.17) probably_damaging(0.937) TCGA-B4-5843-01 14 78221407 78221407 G T SNW1 Missense_Mutation p.A24E 0.60 tolerated(0.76) benign(0.002) TCGA-B4-5843-01 15 74922183 74922183 G A CLK3 Missense_Mutation p.E626K 0.56 deleterious(0.02) benign(0.034) TCGA-B4-5843-01 15 79089102 79089102 C G ADAMTS7 Missense_Mutation p.E217Q 0.36 deleterious(0.01) possibly_damaging(0.809) TCGA-B4-5843-01 16 332800 332800 G T ARHGDIG Missense_Mutation p.D222Y 0.25 deleterious(0) probably_damaging(0.973) TCGA-B4-5843-01 17 16075196 16075196 A T NCOR1 Missense_Mutation p.F119Y 0.35 benign(0.006) TCGA-B4-5843-01 17 26966605 26966605 C G KIAA0100 Missense_Mutation p.K357N 0.35 tolerated(0.15) benign(0.056) TCGA-B4-5843-01 18 77806138 77806138 G A RBFA Missense_Mutation p.G339R 0.08 tolerated_low_confidence(0.51) benign(0) TCGA-B4-5843-01 18 9887808 9887808 C T TXNDC2 Silent p.F444F 0.28 TCGA-B4-5843-01 19 16636145 16636145 C T CHERP Missense_Mutation p.R550H 0.40 tolerated_low_confidence(0.07) benign(0.064) TCGA-B4-5843-01 19 3600521 3600521 C T TBXA2R Missense_Mutation p.G38S 0.35 deleterious(0) probably_damaging(1) TCGA-B4-5843-01 19 39214837 39214837 C T ACTN4 Missense_Mutation p.P578L 0.31 deleterious(0.02) benign(0.184) TCGA-B4-5843-01 19 40225079 40225079 G A CLC Silent p.D49D 0.39 TCGA-B4-5843-01 19 50335647 50335647 T C MED25 Missense_Mutation p.L486P 0.17 deleterious(0) probably_damaging(1) TCGA-B4-5843-01 1 155291790 155291790 G A RUSC1 Missense_Mutation p.E76K 0.70 deleterious_low_confidence(0.05) possibly_damaging(0.725) TCGA-B4-5843-01 1 158369112 158369112 C A OR10T2 Missense_Mutation p.V49F 0.26 deleterious(0) possibly_damaging(0.769) TCGA-B4-5843-01 1 159827673 159827673 C G VSIG8 Missense_Mutation p.G172R 0.12 deleterious(0) probably_damaging(0.999) TCGA-B4-5843-01 1 169364364 169364364 G - CCDC181 Frame_Shift_Del p.A483Vfs*? 0.23 TCGA-B4-5843-01 1 169857876 169857876 A G SCYL3 Missense_Mutation p.F36L 0.19 tolerated(0.69) benign(0.002) TCGA-B4-5843-01 1 236399554 236399554 T C ERO1LB Intron 0.31 TCGA-B4-5843-01 1 27755405 27755405 G T WASF2 5'UTR 0.31 TCGA-B4-5843-01 1 32207698 32207698 C - BAI2 Frame_Shift_Del p.G458Vfs*62 0.30 TCGA-B4-5843-01 1 32279573 32279573 G A SPOCD1 Silent p.S454S 0.31 TCGA-B4-5843-01 1 92193363 92193363 A G TGFBR3 Silent p.S246S 0.13 TCGA-B4-5843-01 1 92789348 92789348 C T RPAP2 Missense_Mutation p.P291S 0.34 tolerated(0.16) probably_damaging(1) TCGA-B4-5843-01 20 33867388 33867388 G A EIF6 Missense_Mutation p.R237W 0.05 deleterious(0.02) possibly_damaging(0.884) TCGA-B4-5843-01 22 50904460 50904460 A G SBF1 Missense_Mutation p.I314T 0.25 deleterious(0) benign(0.189) TCGA-B4-5843-01 2 129026221 129026221 C AG HS6ST1 Frame_Shift_Ins p.V251Lfs*71 0.37 TCGA-B4-5843-01 2 17698606 17698606 A G RAD51AP2 Silent p.N359N 0.04 TCGA-B4-5843-01 2 183593374 183593374 T A DNAJC10 Missense_Mutation p.L164I 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-B4-5843-01 3 10183860 10183860 A C VHL Missense_Mutation p.H110P 0.42 tolerated(0.09) possibly_damaging(0.9) TCGA-B4-5843-01 3 136062680 136062683 AAAA - STAG1 Frame_Shift_Del p.F1146Yfs*11 0.32 TCGA-B4-5843-01 4 13602337 13602337 C T BOD1L1 Missense_Mutation p.G2063R 0.27 benign(0.086) TCGA-B4-5843-01 4 39606801 39606801 C A SMIM14 Splice_Site 0.26 TCGA-B4-5843-01 4 70148312 70148312 C T UGT2B28 Missense_Mutation p.H268Y 0.37 tolerated(0.06) benign(0.014) TCGA-B4-5843-01 4 82010844 82010844 T C PRKG2 3'UTR 0.05 TCGA-B4-5843-01 5 118569034 118569034 G T DMXL1 Splice_Site p.X2759_splice 0.31 TCGA-B4-5843-01 5 43506009 43506009 G A C5orf34 Missense_Mutation p.A258V 0.05 deleterious(0) probably_damaging(0.976) TCGA-B4-5843-01 6 55739678 55739678 A - BMP5 5'UTR 0.27 TCGA-B4-5843-01 7 127978320 127978320 G T RBM28 Missense_Mutation p.N175K 0.23 deleterious(0) possibly_damaging(0.727) TCGA-B4-5843-01 7 73466123 73466132 TGTTCCTGGC G ELN In_Frame_Del p.V285_G287del 0.12 TCGA-B4-5843-01 7 91631292 91631292 T A AKAP9 Missense_Mutation p.N687K 0.29 benign(0.272) TCGA-B4-5843-01 7 97823182 97823182 C G LMTK2 Silent p.P1135P 0.17 TCGA-B4-5843-01 9 103348134 103348134 G C MURC Missense_Mutation p.D166H 0.30 tolerated(0.11) possibly_damaging(0.667) TCGA-B4-5843-01 9 117803269 117803269 G A TNC Silent p.A1781A 0.43 TCGA-B4-5843-01 9 136409649 136409649 G C ADAMTSL2 Missense_Mutation p.R247T 0.27 deleterious(0) probably_damaging(0.996) TCGA-B4-5843-01 9 86587818 86587818 C T HNRNPK Missense_Mutation p.G196R 0.37 deleterious(0.04) benign(0.163) TCGA-B4-5844-01 10 70450720 70450720 A G TET1 Missense_Mutation p.T1854A 0.24 tolerated(0.39) benign(0.026) TCGA-B4-5844-01 10 76861653 76861653 A C DUSP13 Intron 0.14 TCGA-B4-5844-01 11 124543579 124543579 C T SIAE Missense_Mutation p.G9E 0.28 tolerated(0.08) possibly_damaging(0.804) TCGA-B4-5844-01 11 33107506 33107506 C - CSTF3 Frame_Shift_Del p.V609Cfs*11 0.17 TCGA-B4-5844-01 11 61977950 61977950 G T SCGB2A1 Nonsense_Mutation p.E41* 0.24 TCGA-B4-5844-01 11 63585351 63585351 A G C11orf84 Missense_Mutation p.K68E 0.36 tolerated(0.37) benign(0.042) TCGA-B4-5844-01 11 73120706 73120706 C A FAM168A Nonsense_Mutation p.G141* 0.28 TCGA-B4-5844-01 12 102159997 102159997 A C GNPTAB Missense_Mutation p.F495C 0.31 deleterious(0.01) probably_damaging(0.91) TCGA-B4-5844-01 12 109939265 109939265 G A UBE3B Missense_Mutation p.S403N 0.26 tolerated(0.24) benign(0.001) TCGA-B4-5844-01 12 112509842 112509842 G A NAA25 Missense_Mutation p.S298F 0.30 deleterious(0) possibly_damaging(0.646) TCGA-B4-5844-01 14 105413493 105413493 C T AHNAK2 Silent p.A2765A 0.28 TCGA-B4-5844-01 14 20483333 20483333 G T OR4K14 Missense_Mutation p.S7Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-B4-5844-01 15 101983760 101983760 C A PCSK6 Splice_Site p.X133_splice 0.04 TCGA-B4-5844-01 15 42113793 42113793 C A MAPKBP1 Silent p.P916P 0.06 TCGA-B4-5844-01 15 43572078 43572078 G A TGM7 Missense_Mutation p.P475S 0.21 tolerated(0.21) benign(0.01) TCGA-B4-5844-01 15 69689888 69689888 C T PAQR5 Silent p.L198L 0.22 TCGA-B4-5844-01 15 71124409 71124409 C A LARP6 Missense_Mutation p.R486S 0.21 deleterious_low_confidence(0) possibly_damaging(0.73) TCGA-B4-5844-01 15 79187218 79187218 T G MORF4L1 Missense_Mutation p.L326V 0.21 deleterious(0.03) probably_damaging(0.968) TCGA-B4-5844-01 16 24802866 24802866 C A TNRC6A Missense_Mutation p.T968K 0.23 deleterious(0.01) benign(0.169) TCGA-B4-5844-01 16 67236284 67236284 T C ELMO3 Intron 0.14 TCGA-B4-5844-01 16 71212850 71212850 A G HYDIN Missense_Mutation p.I121T 0.31 benign(0.001) TCGA-B4-5844-01 17 11809061 11809061 C T DNAH9 Missense_Mutation p.P3895L 0.33 possibly_damaging(0.849) TCGA-B4-5844-01 17 41063346 41063346 C - G6PC Frame_Shift_Del p.F327Sfs*6 0.24 TCGA-B4-5844-01 17 41341765 41341766 AT - NBR1 Frame_Shift_Del p.I215Cfs*17 0.25 TCGA-B4-5844-01 17 43898756 43898756 T G CRHR1 Missense_Mutation p.W93G 0.05 deleterious(0) probably_damaging(0.999) TCGA-B4-5844-01 17 46865173 46865173 C T TTLL6 Missense_Mutation p.R530Q 0.42 deleterious(0.01) possibly_damaging(0.807) TCGA-B4-5844-01 17 54535324 54535325 - AA ANKFN1 Frame_Shift_Ins p.T518Kfs*31 0.26 TCGA-B4-5844-01 17 72469738 72469738 A C CD300A Missense_Mutation p.Q35P 0.26 deleterious(0) probably_damaging(0.995) TCGA-B4-5844-01 19 16032977 16032977 C A CYP4F11 Splice_Site p.X329_splice 0.32 TCGA-B4-5844-01 19 16032978 16032978 T A CYP4F11 Splice_Site p.X329_splice 0.31 TCGA-B4-5844-01 19 16212200 16212200 G T TPM4 3'UTR 0.42 TCGA-B4-5844-01 19 16528867 16528867 G A EPS15L1 Silent p.F333F 0.25 TCGA-B4-5844-01 19 1809703 1809703 C T ATP8B3 Missense_Mutation p.R114H 0.21 deleterious(0.01) possibly_damaging(0.816) TCGA-B4-5844-01 19 30936076 30936076 G T ZNF536 Missense_Mutation p.G536V 0.21 deleterious(0.05) possibly_damaging(0.798) TCGA-B4-5844-01 19 42221598 42221598 A C CEACAM5 Missense_Mutation p.I395L 0.24 tolerated(0.08) unknown(0) TCGA-B4-5844-01 19 50657913 50657913 C G IZUMO2 Missense_Mutation p.L189F 0.25 tolerated(0.88) possibly_damaging(0.765) TCGA-B4-5844-01 1 11188164 11188164 G C MTOR Missense_Mutation p.T1977R 0.23 deleterious(0) probably_damaging(0.991) TCGA-B4-5844-01 1 149877444 149877444 G A SV2A Missense_Mutation p.P678L 0.27 deleterious(0) probably_damaging(1) TCGA-B4-5844-01 1 196928238 196928238 G A CFHR2 3'UTR 0.35 TCGA-B4-5844-01 1 205631256 205631256 T C SLC45A3 Splice_Site p.X320_splice 0.12 TCGA-B4-5844-01 1 51755792 51755792 C A TTC39A Splice_Site p.X464_splice 0.20 TCGA-B4-5844-01 1 52912272 52912272 G - ZCCHC11 Frame_Shift_Del p.T1168Kfs*4 0.14 TCGA-B4-5844-01 1 67512945 67512945 T A SLC35D1 Intron 0.38 TCGA-B4-5844-01 1 86146557 86146557 G C ZNHIT6 Silent p.L350L 0.27 TCGA-B4-5844-01 1 98348868 98348868 C G DPYD Missense_Mutation p.K34N 0.24 deleterious(0.03) possibly_damaging(0.632) TCGA-B4-5844-01 20 5903084 5903084 C T CHGB Silent p.S98S 0.33 TCGA-B4-5844-01 21 40582046 40582046 T C BRWD1 Missense_Mutation p.M1358V 0.05 deleterious(0.01) probably_damaging(0.955) TCGA-B4-5844-01 22 39711444 39711444 A T RPL3 Silent p.P206P 0.23 TCGA-B4-5844-01 22 50552903 50552903 C T MOV10L1 Silent p.D326D 0.21 TCGA-B4-5844-01 22 50728367 50728370 TGTG - PLXNB2 Frame_Shift_Del p.T215Sfs*175 0.20 TCGA-B4-5844-01 2 169993944 169993944 G C LRP2 Nonsense_Mutation p.Y4526* 0.22 TCGA-B4-5844-01 2 37450342 37450342 C T CEBPZ Missense_Mutation p.G618S 0.05 tolerated(0.11) possibly_damaging(0.7) TCGA-B4-5844-01 3 128694691 128694691 T A KIAA1257 Missense_Mutation p.I318F 0.08 deleterious(0.04) possibly_damaging(0.867) TCGA-B4-5844-01 3 154147212 154147212 T C GPR149 Missense_Mutation p.T65A 0.05 deleterious(0) probably_damaging(0.989) TCGA-B4-5844-01 3 167414854 167414854 T - PDCD10 Frame_Shift_Del p.S71Afs*18 0.22 TCGA-B4-5844-01 3 195698244 195698246 CAA - SDHAP1 RNA 0.10 TCGA-B4-5844-01 3 52692214 52692214 C - PBRM1 Splice_Site p.X215_splice 0.25 TCGA-B4-5844-01 4 106603970 106603970 A C INTS12 Missense_Mutation p.S437A 0.26 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-B4-5844-01 4 110452560 110452560 C A SEC24B Missense_Mutation p.T1091K 0.24 deleterious(0.02) possibly_damaging(0.865) TCGA-B4-5844-01 4 111539370 111539370 T C PITX2 Missense_Mutation p.K296E 0.31 deleterious(0) probably_damaging(0.979) TCGA-B4-5844-01 4 119273399 119273399 G C PRSS12 Missense_Mutation p.D159E 0.21 tolerated(0.08) probably_damaging(0.963) TCGA-B4-5844-01 4 123270439 123270439 G A KIAA1109 Silent p.G4469G 0.26 TCGA-B4-5844-01 4 25664146 25664146 A G SLC34A2 Silent p.G8G 0.23 TCGA-B4-5844-01 5 127594975 127594975 C T FBN2 3'UTR 0.23 TCGA-B4-5844-01 5 140720917 140720917 G A PCDHGA2 Silent p.A793A 0.05 TCGA-B4-5844-01 5 178310052 178310052 A C ZNF354B Missense_Mutation p.N200T 0.27 tolerated(0.45) benign(0.002) TCGA-B4-5844-01 5 54567895 54567919 TTTGGGAAATTTAAACTTACTTATT - DHX29 Splice_Site p.X954_splice 0.35 TCGA-B4-5844-01 6 149773757 149773757 G T ZC3H12D Missense_Mutation p.P261H 0.44 deleterious(0) probably_damaging(1) TCGA-B4-5844-01 6 49754598 49754598 G A PGK2 Silent p.G101G 0.08 TCGA-B4-5844-01 6 50683027 50683027 C G TFAP2D Missense_Mutation p.H80D 0.24 tolerated(0.1) benign(0.005) TCGA-B4-5844-01 7 100175156 100175156 G A LRCH4 Missense_Mutation p.P381L 0.21 tolerated(0.14) benign(0.004) TCGA-B4-5844-01 7 138268636 138268636 G C TRIM24 Missense_Mutation p.L945F 0.26 tolerated(0.07) probably_damaging(0.987) TCGA-B4-5844-01 8 144102375 144102375 G T LY6E Missense_Mutation p.V7L 0.19 tolerated(0.07) benign(0.006) TCGA-B4-5844-01 8 21839275 21839275 T C XPO7 Missense_Mutation p.C331R 0.26 deleterious(0) possibly_damaging(0.896) TCGA-B4-5844-01 8 28210125 28210126 CA - ZNF395 Frame_Shift_Del p.V295Gfs*18 0.17 TCGA-B4-5844-01 9 104357086 104357086 C T PPP3R2 Missense_Mutation p.V43M 0.06 tolerated(0.18) benign(0.027) TCGA-B4-5844-01 9 125423916 125423919 GAGA - OR1L1 5'Flank 0.23 TCGA-B4-5844-01 9 26997769 26997769 T G LRRC19 Silent p.L184L 0.21 TCGA-B4-5844-01 9 39109190 39109190 A T CNTNAP3 Missense_Mutation p.Y778N 0.21 deleterious(0) possibly_damaging(0.835) TCGA-B4-5844-01 9 39176052 39176052 C A CNTNAP3 Missense_Mutation p.R322L 0.23 tolerated(0.35) benign(0) TCGA-B4-5844-01 9 6256277 6256277 T C IL33 3'UTR 0.29 TCGA-B4-5844-01 X 109694660 109694660 T A RGAG1 Missense_Mutation p.I272K 0.03 deleterious(0) probably_damaging(1) TCGA-B4-5844-01 X 119387371 119387371 T C ZBTB33 Missense_Mutation p.V34A 0.30 deleterious(0) probably_damaging(0.999) TCGA-B4-5844-01 X 142967630 142967630 C T UBE2NL Missense_Mutation p.A143V 0.27 deleterious(0.03) benign(0.19) TCGA-B4-5844-01 X 69774533 69774533 T G TEX11 Missense_Mutation p.H768P 0.20 tolerated(0.1) benign(0.274) TCGA-B4-5844-01 X 76919038 76919038 T - ATRX Frame_Shift_Del p.N1318Ifs*28 0.20 TCGA-B4-5844-01 X 91134175 91134175 C T PCDH11X Missense_Mutation p.S979F 0.31 deleterious(0) probably_damaging(1) TCGA-B8-4143-01 10 102056953 102056953 C A PKD2L1 Missense_Mutation p.E323D 0.27 deleterious(0) probably_damaging(0.999) TCGA-B8-4143-01 10 112540834 112540834 C T RBM20 Missense_Mutation p.A156V 0.20 tolerated(0.11) benign(0.345) TCGA-B8-4143-01 10 124458882 124458882 T C C10orf120 Missense_Mutation p.K75E 0.08 deleterious(0) possibly_damaging(0.84) TCGA-B8-4143-01 10 16975260 16975260 T A CUBN Missense_Mutation p.T1984S 0.20 tolerated(0.06) possibly_damaging(0.646) TCGA-B8-4143-01 10 90534901 90534901 A C LIPN Missense_Mutation p.N315T 0.16 deleterious(0) possibly_damaging(0.83) TCGA-B8-4143-01 11 110150412 110150412 C A RDX Silent p.P2P 0.19 TCGA-B8-4143-01 11 113934420 113934420 C T ZBTB16 Missense_Mutation p.T133M 0.30 deleterious(0.02) benign(0.334) TCGA-B8-4143-01 11 55406555 55406555 A G OR4P4 Missense_Mutation p.H241R 0.12 deleterious(0) probably_damaging(1) TCGA-B8-4143-01 11 60164088 60164088 G A MS4A14 Missense_Mutation p.V13I 0.34 tolerated(0.17) benign(0.09) TCGA-B8-4143-01 11 64029901 64029901 G A PLCB3 Silent p.A687A 0.26 TCGA-B8-4143-01 11 64897312 64897312 T C SYVN1 Missense_Mutation p.H495R 0.22 tolerated(0.43) unknown(0) TCGA-B8-4143-01 12 13906356 13906356 G A GRIN2B Missense_Mutation p.T302I 0.07 tolerated(0.11) benign(0.298) TCGA-B8-4143-01 12 26553126 26553126 C T ITPR2 Missense_Mutation p.V2489M 0.33 deleterious(0.01) possibly_damaging(0.663) TCGA-B8-4143-01 12 27066946 27066946 G C ASUN Missense_Mutation p.P512R 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-B8-4143-01 12 49444338 49444338 C T KMT2D Silent p.P1011P 0.21 TCGA-B8-4143-01 12 53686061 53686061 G T ESPL1 Splice_Site p.X1933_splice 0.31 TCGA-B8-4143-01 13 26413708 26413708 G A ATP8A2 Missense_Mutation p.A968T 0.38 deleterious(0) probably_damaging(0.942) TCGA-B8-4143-01 13 36046544 36046544 G T NBEA Silent p.V2152V 0.38 TCGA-B8-4143-01 13 49084795 49084795 T A RCBTB2 Missense_Mutation p.Y299F 0.35 tolerated(0.66) possibly_damaging(0.457) TCGA-B8-4143-01 14 37777677 37777677 G A MIPOL1 Missense_Mutation p.E261K 0.54 deleterious(0) probably_damaging(0.999) TCGA-B8-4143-01 15 34355731 34355731 G A CHRM5 Nonsense_Mutation p.W271* 0.44 TCGA-B8-4143-01 15 41689026 41689026 G C NDUFAF1 Missense_Mutation p.P78A 0.45 tolerated(0.44) benign(0.016) TCGA-B8-4143-01 16 14328057 14328057 G A MKL2 Missense_Mutation p.D250N 0.34 deleterious(0.01) possibly_damaging(0.772) TCGA-B8-4143-01 16 1550655 1550655 C T TELO2 Silent p.V412V 0.40 TCGA-B8-4143-01 16 70986456 70986456 C A HYDIN Missense_Mutation p.M2133I 0.23 benign(0.003) TCGA-B8-4143-01 17 16722824 16722824 G A AC022596.6 RNA 0.56 TCGA-B8-4143-01 17 26694980 26694980 T A CTB-96E2.2 Silent p.A18A 0.23 TCGA-B8-4143-01 17 37899552 37899552 C T GRB7 Missense_Mutation p.P218S 0.35 deleterious(0.01) benign(0.313) TCGA-B8-4143-01 17 70120330 70120330 C A SOX9 Missense_Mutation p.D444E 0.44 tolerated(0.11) benign(0.009) TCGA-B8-4143-01 17 73654527 73654527 A C RECQL5 Missense_Mutation p.W334G 0.23 deleterious(0) probably_damaging(0.999) TCGA-B8-4143-01 17 79857246 79857246 G A ANAPC11 Missense_Mutation p.G80R 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.511) TCGA-B8-4143-01 19 19218851 19218852 AG - SLC25A42 Frame_Shift_Del p.E217Vfs*130 0.20 TCGA-B8-4143-01 19 46915055 46915055 T C CCDC8 Missense_Mutation p.E338G 0.13 benign(0.006) TCGA-B8-4143-01 19 54803946 54803946 C T LILRA3 Missense_Mutation p.A23T 0.69 tolerated(0.07) benign(0.072) TCGA-B8-4143-01 1 109289328 109289328 G A STXBP3 5'UTR 0.29 TCGA-B8-4143-01 1 110151406 110151406 T C GNAT2 Missense_Mutation p.D103G 0.37 deleterious(0.01) benign(0.081) TCGA-B8-4143-01 1 110199939 110199939 C T GSTM4 Intron 0.14 TCGA-B8-4143-01 1 115221022 115221022 T A AMPD1 Nonsense_Mutation p.K375* 0.26 TCGA-B8-4143-01 1 149858563 149858563 C T HIST2H2AC Silent p.A13A 0.14 TCGA-B8-4143-01 1 149859428 149859428 A G HIST2H2AB Silent p.A13A 0.18 TCGA-B8-4143-01 1 161123726 161123726 G T UFC1 5'UTR 0.36 TCGA-B8-4143-01 1 248004821 248004821 G A OR11L1 Silent p.I126I 0.18 TCGA-B8-4143-01 1 41007325 41007325 G A ZNF684 Missense_Mutation p.E61K 0.28 tolerated(0.06) benign(0.046) TCGA-B8-4143-01 1 93602579 93602579 T C MTF2 Missense_Mutation p.S593P 0.08 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-B8-4143-01 20 34312531 34312531 T C RBM39 Silent p.Q216Q 0.32 TCGA-B8-4143-01 20 3765589 3765589 A G CENPB Silent p.S514S 0.32 TCGA-B8-4143-01 21 31768458 31768458 C T KRTAP13-1 Silent p.Y18Y 0.34 TCGA-B8-4143-01 21 38390280 38390280 T C RIPPLY3 Missense_Mutation p.S116P 0.19 deleterious(0.02) benign(0.09) TCGA-B8-4143-01 22 37578293 37578293 A G C1QTNF6 Missense_Mutation p.Y258H 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-B8-4143-01 2 160240140 160240140 C A BAZ2B Missense_Mutation p.W1246C 0.25 benign(0.068) TCGA-B8-4143-01 2 162696378 162696378 A G SLC4A10 Silent p.T119T 0.26 TCGA-B8-4143-01 2 163204196 163204196 A G GCA Missense_Mutation p.T46A 0.21 tolerated(0.63) benign(0.001) TCGA-B8-4143-01 2 1652062 1652062 C T PXDN Missense_Mutation p.D1164N 0.35 deleterious(0) probably_damaging(1) TCGA-B8-4143-01 2 179404327 179404327 T G TTN Missense_Mutation p.D32822A 0.27 TCGA-B8-4143-01 2 197946412 197946412 C T ANKRD44 Missense_Mutation p.E474K 0.11 deleterious(0.04) benign(0.02) TCGA-B8-4143-01 2 233431788 233431788 G A EIF4E2 Missense_Mutation p.E177K 0.33 deleterious(0) probably_damaging(0.96) TCGA-B8-4143-01 2 238280964 238280964 C T COL6A3 Silent p.R1232R 0.39 TCGA-B8-4143-01 2 242815348 242815348 G C CXXC11 Missense_Mutation p.W547C 0.35 tolerated(0.16) benign(0.038) TCGA-B8-4143-01 2 71825715 71825715 T C DYSF Missense_Mutation p.F1199S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-B8-4143-01 3 101080668 101080668 T C SENP7 Missense_Mutation p.E505G 0.09 tolerated(0.12) probably_damaging(0.928) TCGA-B8-4143-01 3 136183813 136183813 A G STAG1 Missense_Mutation p.L408P 0.08 deleterious(0) probably_damaging(0.996) TCGA-B8-4143-01 3 44847461 44847461 C T KIF15 Missense_Mutation p.H652Y 0.44 deleterious(0) probably_damaging(0.993) TCGA-B8-4143-01 3 50396355 50396355 A G TMEM115 Missense_Mutation p.V47A 0.14 deleterious(0) probably_damaging(0.991) TCGA-B8-4143-01 3 52437163 52437163 G C BAP1 Nonsense_Mutation p.Y627* 0.57 TCGA-B8-4143-01 4 186577860 186577860 G T SORBS2 Intron 0.24 TCGA-B8-4143-01 4 56284067 56284067 T - TMEM165 Frame_Shift_Del p.F237Lfs*7 0.14 TCGA-B8-4143-01 4 70460937 70460937 C T UGT2A1 Missense_Mutation p.A509T 0.36 tolerated(0.08) benign(0.038) TCGA-B8-4143-01 4 83280713 83280713 C T HNRNPD Missense_Mutation p.V124I 0.17 tolerated(0.3) benign(0.262) TCGA-B8-4143-01 5 172362193 172362193 A G ERGIC1 Silent p.E215E 0.08 TCGA-B8-4143-01 6 25285102 25285102 G T LRRC16A Nonsense_Mutation p.E35* 0.15 TCGA-B8-4143-01 6 27100432 27100432 C T HIST1H2BJ Missense_Mutation p.S33N 0.61 deleterious_low_confidence(0.05) unknown(0) TCGA-B8-4143-01 6 47649747 47649747 C - GPR111 Frame_Shift_Del p.H485Mfs*12 0.34 TCGA-B8-4143-01 6 49667553 49667553 T C CRISP2 Missense_Mutation p.T79A 0.21 deleterious(0.05) benign(0.114) TCGA-B8-4143-01 6 51747999 51747999 C A PKHD1 Silent p.L2414L 0.16 TCGA-B8-4143-01 7 128845209 128845209 G A SMO Missense_Mutation p.A235T 0.48 deleterious(0.01) possibly_damaging(0.658) TCGA-B8-4143-01 7 129064971 129064971 C A AHCYL2 Missense_Mutation p.P566H 0.17 deleterious(0) probably_damaging(1) TCGA-B8-4143-01 7 35029520 35029520 C T DPY19L1 Silent p.L193L 0.27 TCGA-B8-4143-01 7 45005737 45005737 T A MYO1G Missense_Mutation p.T698S 0.19 tolerated(0.05) benign(0.174) TCGA-B8-4143-01 7 76826154 76826154 C T FGL2 Silent p.L254L 0.14 TCGA-B8-4143-01 8 139825225 139825225 C A COL22A1 Missense_Mutation p.R428I 0.12 unknown(0) TCGA-B8-4143-01 9 100326390 100326390 G A TMOD1 Silent p.T186T 0.69 TCGA-B8-4143-01 9 131077879 131077879 G A TRUB2 Silent p.L115L 0.53 TCGA-B8-4143-01 9 91977095 91977095 T A SECISBP2 3'Flank 0.67 TCGA-B8-4143-01 X 117032810 117032810 G T KLHL13 3'UTR 0.10 TCGA-B8-4143-01 X 118217056 118217056 G C KIAA1210 Missense_Mutation p.P1626A 0.26 tolerated(0.28) benign(0.003) TCGA-B8-4143-01 X 138619166 138619166 C A F9 Intron 0.19 TCGA-B8-4143-01 X 154563725 154563725 C A CLIC2 Silent p.L4L 0.39 TCGA-B8-4143-01 X 27766775 27766775 C T DCAF8L2 Missense_Mutation p.T588M 0.28 deleterious(0.04) possibly_damaging(0.603) TCGA-B8-4143-01 X 53586385 53586385 G T HUWE1 Silent p.I2615I 0.19 TCGA-B8-4146-01 10 120877121 120877121 C A FAM45A Silent p.G141G 0.32 TCGA-B8-4146-01 10 121336683 121336683 A G TIAL1 Missense_Mutation p.I274T 0.05 deleterious(0) probably_damaging(1) TCGA-B8-4146-01 10 78872137 78872137 C A KCNMA1 Silent p.G316G 0.13 TCGA-B8-4146-01 11 56954876 56954876 G A LRRC55 Silent p.V316V 0.28 TCGA-B8-4146-01 11 63141417 63141418 TG - SLC22A9 Frame_Shift_Del p.C239Pfs*52 0.28 TCGA-B8-4146-01 11 96092231 96092231 C T CCDC82 Missense_Mutation p.V498I 0.29 tolerated(0.31) benign(0.112) TCGA-B8-4146-01 12 29640641 29640641 G C OVCH1 Missense_Mutation p.Q293E 0.67 deleterious(0.01) possibly_damaging(0.826) TCGA-B8-4146-01 12 48543458 48543458 T C ASB8 Silent p.T186T 0.40 TCGA-B8-4146-01 12 54403350 54403350 C - HOXC8 Frame_Shift_Del p.R96Dfs*34 0.28 TCGA-B8-4146-01 14 21875113 21875113 G C CHD8 Missense_Mutation p.L937V 0.35 deleterious(0) probably_damaging(0.994) TCGA-B8-4146-01 14 50360965 50360965 T A ARF6 Missense_Mutation p.S171T 0.59 tolerated_low_confidence(0.18) benign(0) TCGA-B8-4146-01 15 43026449 43026449 G C CDAN1 Missense_Mutation p.A411G 0.36 tolerated(0.24) probably_damaging(0.987) TCGA-B8-4146-01 15 58834808 58834808 G A LIPC Missense_Mutation p.G178S 0.35 deleterious(0) probably_damaging(0.993) TCGA-B8-4146-01 15 78393416 78393416 A G SH2D7 Missense_Mutation p.Y274C 0.35 tolerated(1) benign(0) TCGA-B8-4146-01 15 83215272 83215272 C A CPEB1 Splice_Site p.X499_splice 0.34 TCGA-B8-4146-01 15 99465636 99465636 G T IGF1R Missense_Mutation p.V821F 0.06 deleterious(0.01) benign(0.202) TCGA-B8-4146-01 16 28898565 28898565 C A ATP2A1 Silent p.V200V 0.39 TCGA-B8-4146-01 17 17723754 17723754 C T SREBF1 Missense_Mutation p.G88D 0.29 tolerated(0.57) benign(0.007) TCGA-B8-4146-01 17 48918256 48918256 G A WFIKKN2 Missense_Mutation p.G536D 0.06 deleterious(0) probably_damaging(1) TCGA-B8-4146-01 17 60028244 60028244 G C MED13 Missense_Mutation p.P2078R 0.34 deleterious(0) benign(0.38) TCGA-B8-4146-01 17 74018281 74018281 G A EVPL Nonsense_Mutation p.R212* 0.33 TCGA-B8-4146-01 19 14910636 14910636 T A OR7C1 Missense_Mutation p.T105S 0.33 tolerated_low_confidence(0.05) benign(0.044) TCGA-B8-4146-01 19 17405546 17405546 G T ABHD8 Silent p.I290I 0.29 TCGA-B8-4146-01 1 201079330 201079330 T G CACNA1S Missense_Mutation p.M74L 0.24 tolerated(0.14) benign(0.286) TCGA-B8-4146-01 1 212792385 212792385 C G ATF3 Intron 0.32 TCGA-B8-4146-01 1 247265092 247265092 T C ZNF669 Silent p.G130G 0.26 TCGA-B8-4146-01 1 247265093 247265093 C A ZNF669 Missense_Mutation p.G130V 0.26 deleterious(0) probably_damaging(0.929) TCGA-B8-4146-01 21 9907346 9907346 G A TEKT4P2 RNA 0.17 TCGA-B8-4146-01 22 50279076 50279076 G C ZBED4 Missense_Mutation p.G589A 0.34 deleterious(0) probably_damaging(1) TCGA-B8-4146-01 2 152709962 152709962 T C CACNB4 Silent p.P372P 0.32 TCGA-B8-4146-01 2 224866369 224866369 G A SERPINE2 Silent p.Y95Y 0.08 TCGA-B8-4146-01 2 238999918 238999918 A T SCLY Intron 0.30 TCGA-B8-4146-01 2 32476580 32476580 T A NLRC4 Missense_Mutation p.Y118F 0.34 tolerated(0.43) benign(0.003) TCGA-B8-4146-01 3 113115391 113115391 G A WDR52 Missense_Mutation p.R585C 0.05 deleterious(0.02) probably_damaging(0.952) TCGA-B8-4146-01 3 113325904 113325904 G C SIDT1 Missense_Mutation p.G474A 0.42 deleterious(0) probably_damaging(0.96) TCGA-B8-4146-01 3 169815138 169815151 CTGTGCTCTGAATT - PHC3 Frame_Shift_Del p.E952Gfs*3 0.35 TCGA-B8-4146-01 3 179526182 179526182 G A PEX5L Missense_Mutation p.H466Y 0.37 tolerated(0.1) benign(0.405) TCGA-B8-4146-01 3 49158615 49158615 C T LAMB2 3'UTR 0.55 TCGA-B8-4146-01 4 10447375 10447375 T C ZNF518B Missense_Mutation p.E193G 0.15 deleterious(0) probably_damaging(0.999) TCGA-B8-4146-01 4 437566 437566 A - ZNF721 Frame_Shift_Del p.F230Lfs*7 0.20 TCGA-B8-4146-01 4 6843902 6843902 G A KIAA0232 Missense_Mutation p.V114I 0.39 deleterious(0.03) possibly_damaging(0.885) TCGA-B8-4146-01 5 137910976 137910976 C A HSPA9 Missense_Mutation p.R11L 0.34 tolerated_low_confidence(0.06) unknown(0) TCGA-B8-4146-01 5 149933065 149933065 C G NDST1 3'UTR 0.36 TCGA-B8-4146-01 6 56483775 56483775 G A DST Intron 0.27 TCGA-B8-4146-01 6 57372299 57372299 G A PRIM2 Silent p.R235R 0.13 TCGA-B8-4146-01 7 139257896 139257896 C - HIPK2 Frame_Shift_Del p.G1125Afs*22 0.19 TCGA-B8-4146-01 7 64168953 64168953 C T ZNF107 Silent p.F757F 0.38 TCGA-B8-4146-01 8 1728612 1728612 C T CLN8 Missense_Mutation p.P247L 0.30 deleterious(0) probably_damaging(1) TCGA-B8-4146-01 9 119413893 119413893 C G ASTN2 Missense_Mutation p.E945Q 0.38 tolerated(0.15) unknown(0) TCGA-B8-4146-01 X 106066596 106066596 C T TBC1D8B Missense_Mutation p.L243F 0.05 deleterious(0) possibly_damaging(0.594) TCGA-B8-4146-01 X 117032986 117032986 T - KLHL13 Frame_Shift_Del p.K621Rfs*48 0.13 TCGA-B8-4148-01 10 31799802 31799805 AAGT - ZEB1 Splice_Site p.X229_splice 0.31 TCGA-B8-4148-01 10 33199338 33199338 G A ITGB1 Silent p.D659D 0.07 TCGA-B8-4148-01 10 5951142 5951142 G A FBXO18 Missense_Mutation p.C353Y 0.24 tolerated(1) benign(0.005) TCGA-B8-4148-01 10 81838462 81838462 A C TMEM254 Missense_Mutation p.T3P 0.27 tolerated(0.16) benign(0.002) TCGA-B8-4148-01 10 95720827 95720827 C A PIPSL RNA 0.25 TCGA-B8-4148-01 11 118779364 118779364 C T BCL9L Silent p.R9R 0.17 TCGA-B8-4148-01 11 123753906 123753906 G A TMEM225 Missense_Mutation p.A206V 0.24 tolerated(1) benign(0) TCGA-B8-4148-01 11 5474970 5474970 C G OR51I2 Silent p.T84T 0.07 TCGA-B8-4148-01 11 65426222 65426222 C T RELA Missense_Mutation p.E211K 0.26 deleterious(0) probably_damaging(0.987) TCGA-B8-4148-01 12 123800154 123800154 A G SBNO1 Missense_Mutation p.S997P 0.29 deleterious(0) possibly_damaging(0.8) TCGA-B8-4148-01 12 58220853 58220853 C T CTDSP2 Missense_Mutation p.V94M 0.34 tolerated(0.08) benign(0.014) TCGA-B8-4148-01 14 24600851 24600851 G A RP11-468E2.6 Missense_Mutation p.V215M 0.11 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-B8-4148-01 15 88476307 88476307 C T NTRK3 Missense_Mutation p.D609N 0.20 deleterious(0) probably_damaging(0.979) TCGA-B8-4148-01 16 726989 726990 - AA RHBDL1 Nonsense_Mutation p.Y214* 0.15 TCGA-B8-4148-01 18 72516044 72516044 G A ZNF407 Intron 0.32 TCGA-B8-4148-01 19 10334693 10334693 G A S1PR2 Missense_Mutation p.R297W 0.26 deleterious(0) benign(0.002) TCGA-B8-4148-01 19 10335160 10335160 C T S1PR2 Missense_Mutation p.G141D 0.14 tolerated(1) benign(0.058) TCGA-B8-4148-01 19 33149837 33149841 CCACT - ANKRD27 Frame_Shift_Del p.K27Nfs*26 0.16 TCGA-B8-4148-01 19 37733520 37733520 G C ZNF383 Missense_Mutation p.A128P 0.27 deleterious(0) benign(0) TCGA-B8-4148-01 19 46318935 46318935 C T SYMPK Silent p.L1236L 0.27 TCGA-B8-4148-01 19 55221501 55221501 C G AC098784.2 3'Flank 0.28 TCGA-B8-4148-01 1 1104459 1104459 A G TTLL10 5'Flank 0.28 TCGA-B8-4148-01 1 114184768 114184768 G T MAGI3 Missense_Mutation p.K532N 0.22 tolerated(0.33) benign(0.358) TCGA-B8-4148-01 1 152280282 152280282 G C FLG Missense_Mutation p.H2360Q 0.39 possibly_damaging(0.537) TCGA-B8-4148-01 1 223994599 223994599 T C TP53BP2 Silent p.A141A 0.26 TCGA-B8-4148-01 1 248005200 248005200 G T OR11L1 5'UTR 0.20 TCGA-B8-4148-01 1 60073552 60073560 TGAAGGTGG - FGGY In_Frame_Del p.E328_G330del 0.13 TCGA-B8-4148-01 20 422395 422395 G A TBC1D20 Intron 0.29 TCGA-B8-4148-01 20 5098236 5098236 A C PCNA Missense_Mutation p.I154M 0.33 tolerated(0.23) benign(0.337) TCGA-B8-4148-01 2 15758358 15758358 G C DDX1 Missense_Mutation p.Q390H 0.22 deleterious(0.04) benign(0.111) TCGA-B8-4148-01 2 198362076 198362076 T G HSPD1 Missense_Mutation p.K72T 0.25 deleterious(0.02) benign(0.152) TCGA-B8-4148-01 2 71190307 71190307 G C ATP6V1B1 Missense_Mutation p.E309Q 0.22 deleterious(0) probably_damaging(0.939) TCGA-B8-4148-01 3 10191557 10191558 - T VHL Frame_Shift_Ins p.Y185Lfs*71 0.25 TCGA-B8-4148-01 3 48732030 48732030 T A IP6K2 Intron 0.30 TCGA-B8-4148-01 3 52651357 52651357 T C PBRM1 Missense_Mutation p.Y580C 0.34 deleterious(0) probably_damaging(0.99) TCGA-B8-4148-01 4 104080236 104080236 A C CENPE Missense_Mutation p.N844K 0.09 benign(0.006) TCGA-B8-4148-01 5 140480794 140480794 C T PCDHB3 Silent p.D187D 0.25 TCGA-B8-4148-01 5 82815685 82815685 G T VCAN Missense_Mutation p.L520F 0.24 tolerated(1) benign(0.002) TCGA-B8-4148-01 6 12292680 12292680 C T EDN1 Silent p.S57S 0.20 TCGA-B8-4148-01 6 43272019 43272019 A G SLC22A7 Intron 0.09 TCGA-B8-4148-01 7 1012903 1012903 T A COX19 Missense_Mutation p.K36N 0.21 tolerated(0.15) benign(0.017) TCGA-B8-4148-01 8 43147724 43147724 C T POTEA RNA 0.31 TCGA-B8-4148-01 9 136234216 136234216 G A SURF4 Missense_Mutation p.R52C 0.20 deleterious(0.04) benign(0.178) TCGA-B8-4148-01 X 154490260 154490260 G C RAB39B Missense_Mutation p.A157G 0.08 tolerated(1) benign(0.052) TCGA-B8-4148-01 X 44132000 44132000 T C EFHC2 Missense_Mutation p.Y105C 0.28 deleterious(0.01) possibly_damaging(0.67) TCGA-B8-4148-01 X 54577474 54577474 G C GNL3L Missense_Mutation p.G285A 0.27 deleterious(0) possibly_damaging(0.887) TCGA-B8-4148-01 X 70146739 70146740 - A SLC7A3 Frame_Shift_Ins p.C480Lfs*61 0.08 TCGA-B8-4151-01 10 15902340 15902340 G T FAM188A 5'UTR 0.41 TCGA-B8-4151-01 10 30986423 30986423 C T SVILP1 RNA 0.07 TCGA-B8-4151-01 11 100933375 100933375 C G PGR Missense_Mutation p.R672T 0.40 deleterious(0.03) possibly_damaging(0.882) TCGA-B8-4151-01 11 10624763 10624763 C G MRVI1 Silent p.R593R 0.13 TCGA-B8-4151-01 11 35492180 35492180 G A PAMR1 Silent p.D227D 0.05 TCGA-B8-4151-01 11 45928173 45928173 G A C11orf94 Missense_Mutation p.R82C 0.14 deleterious(0) probably_damaging(0.996) TCGA-B8-4151-01 11 65338194 65338194 C T SSSCA1 Missense_Mutation p.R47C 0.42 deleterious(0) probably_damaging(0.998) TCGA-B8-4151-01 11 66189604 66189604 G A NPAS4 Silent p.A63A 0.48 TCGA-B8-4151-01 12 10603588 10603588 G T KLRC1 Missense_Mutation p.D56E 0.16 tolerated(0.13) benign(0.035) TCGA-B8-4151-01 12 132211499 132211506 TCTGACAA - SFSWAP Frame_Shift_Del p.S283* 0.23 TCGA-B8-4151-01 12 4668106 4668106 T A RAD51AP1 Missense_Mutation p.L336M 0.40 deleterious(0) probably_damaging(1) TCGA-B8-4151-01 12 49427164 49427164 C T KMT2D Missense_Mutation p.G3775D 0.36 probably_damaging(0.994) TCGA-B8-4151-01 12 54063038 54063038 C A ATP5G2 Missense_Mutation p.D126Y 0.58 deleterious(0) probably_damaging(0.991) TCGA-B8-4151-01 12 57409489 57409489 A T TAC3 Silent p.V31V 0.37 TCGA-B8-4151-01 12 7842617 7842617 G T GDF3 Missense_Mutation p.H318N 0.37 tolerated(0.12) benign(0.014) TCGA-B8-4151-01 12 7842665 7842665 T C GDF3 Missense_Mutation p.T302A 0.40 tolerated(0.13) benign(0.046) TCGA-B8-4151-01 12 81688619 81688619 G A PPFIA2 Nonsense_Mutation p.R974* 0.06 TCGA-B8-4151-01 13 22275428 22275428 C T FGF9 Nonsense_Mutation p.R161* 0.06 TCGA-B8-4151-01 14 100165841 100165841 G C CYP46A1 Missense_Mutation p.K107N 0.06 tolerated(0.35) possibly_damaging(0.5) TCGA-B8-4151-01 14 65204095 65204095 T C PLEKHG3 Splice_Site p.X412_splice 0.44 TCGA-B8-4151-01 15 43821515 43821515 C A MAP1A Missense_Mutation p.P2615Q 0.40 probably_damaging(0.999) TCGA-B8-4151-01 16 12136831 12136831 G T SNX29 Missense_Mutation p.A109S 0.32 tolerated(0.77) benign(0.001) TCGA-B8-4151-01 16 51173118 51173118 A C SALL1 Missense_Mutation p.I1005M 0.35 tolerated(0.07) probably_damaging(0.984) TCGA-B8-4151-01 16 51173119 51173119 A T SALL1 Missense_Mutation p.I1005N 0.35 deleterious(0) probably_damaging(0.984) TCGA-B8-4151-01 16 67660544 67660544 C A CTCF Missense_Mutation p.L482I 0.48 deleterious(0.01) probably_damaging(0.994) TCGA-B8-4151-01 17 35297675 35297675 A C LHX1 Missense_Mutation p.N87H 0.48 tolerated(0.06) probably_damaging(0.989) TCGA-B8-4151-01 17 36963045 36963045 C T CWC25 Missense_Mutation p.R292K 0.40 tolerated(0.26) benign(0.006) TCGA-B8-4151-01 17 53853436 53853436 G C PCTP Missense_Mutation p.C207S 0.42 deleterious(0) possibly_damaging(0.81) TCGA-B8-4151-01 17 64213023 64213023 T G APOH Missense_Mutation p.T223P 0.23 tolerated(0.16) benign(0.061) TCGA-B8-4151-01 17 649272 649272 G C GEMIN4 Missense_Mutation p.L671V 0.33 deleterious(0.02) benign(0.117) TCGA-B8-4151-01 18 32621482 32621482 T C MAPRE2 5'UTR 0.08 TCGA-B8-4151-01 18 48345981 48345981 T C MRO Silent p.S37S 0.20 TCGA-B8-4151-01 19 39668357 39668357 G A PAK4 Missense_Mutation p.D510N 0.38 deleterious(0) possibly_damaging(0.62) TCGA-B8-4151-01 19 52568835 52568835 C T ZNF841 Missense_Mutation p.C767Y 0.32 deleterious(0.02) probably_damaging(1) TCGA-B8-4151-01 1 111743023 111743023 A T DENND2D Missense_Mutation p.L20H 0.42 tolerated_low_confidence(0.54) benign(0.002) TCGA-B8-4151-01 1 154962043 154962043 T G FLAD1 Silent p.S375S 0.36 TCGA-B8-4151-01 1 155300500 155300500 A G RUSC1 3'UTR 0.44 TCGA-B8-4151-01 1 159827560 159827560 C T VSIG8 Silent p.E209E 0.39 TCGA-B8-4151-01 1 182869151 182869151 G A SHCBP1L Silent p.N643N 0.34 TCGA-B8-4151-01 1 216166458 216166458 C A USH2A Missense_Mutation p.D2237Y 0.46 benign(0.287) TCGA-B8-4151-01 1 231374536 231374536 A G C1orf131 Intron 0.06 TCGA-B8-4151-01 1 248722525 248722525 C A OR2T29 Missense_Mutation p.V90F 0.21 deleterious(0.03) possibly_damaging(0.617) TCGA-B8-4151-01 1 33612870 33612870 G A TRIM62 Missense_Mutation p.P446S 0.32 tolerated(0.66) benign(0.212) TCGA-B8-4151-01 1 36226519 36226519 T C CLSPN Splice_Site p.X335_splice 0.07 TCGA-B8-4151-01 1 95357883 95357883 A C SLC44A3 Missense_Mutation p.N556T 0.36 deleterious(0) probably_damaging(1) TCGA-B8-4151-01 20 62370185 62370185 A G LIME1 Missense_Mutation p.T274A 0.38 tolerated_low_confidence(0.76) benign(0.388) TCGA-B8-4151-01 22 50657163 50657163 T C TUBGCP6 Missense_Mutation p.D1597G 0.38 deleterious(0) probably_damaging(1) TCGA-B8-4151-01 2 101885856 101885856 A C CNOT11 Missense_Mutation p.E505A 0.40 tolerated_low_confidence(0.18) benign(0.052) TCGA-B8-4151-01 2 148677842 148677842 G T ACVR2A Missense_Mutation p.A336S 0.40 deleterious(0) probably_damaging(0.934) TCGA-B8-4151-01 2 231090582 231090582 G A SP140 Missense_Mutation p.G8E 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-B8-4151-01 2 232323070 232323070 T C NCL Missense_Mutation p.N399S 0.38 probably_damaging(0.971) TCGA-B8-4151-01 3 195269862 195269862 G C PPP1R2 5'UTR 0.53 TCGA-B8-4151-01 3 197403751 197403751 C T KIAA0226 Intron 0.22 TCGA-B8-4151-01 3 52436345 52436345 G - BAP1 Frame_Shift_Del p.R717Gfs*19 0.59 TCGA-B8-4151-01 3 52712605 52712605 C - PBRM1 Frame_Shift_Del p.C50Afs*45 0.38 TCGA-B8-4151-01 4 141302257 141302257 A G SCOC Silent p.%3D 0.36 TCGA-B8-4151-01 4 160273849 160273849 C T RAPGEF2 Missense_Mutation p.A1132V 0.46 tolerated_low_confidence(0.61) benign(0.027) TCGA-B8-4151-01 4 187172722 187172722 T A KLKB1 Missense_Mutation p.V317D 0.38 tolerated(0.14) benign(0.015) TCGA-B8-4151-01 4 39905797 39905797 T C PDS5A Silent p.K416K 0.05 TCGA-B8-4151-01 5 137761132 137761132 C T KDM3B Silent p.L1424L 0.07 TCGA-B8-4151-01 5 179299981 179299981 T - TBC1D9B Frame_Shift_Del p.S776Afs*2 0.18 TCGA-B8-4151-01 6 24706388 24706388 G T C6orf62 Missense_Mutation p.L223I 0.36 tolerated(0.1) possibly_damaging(0.475) TCGA-B8-4151-01 7 101063346 101063346 T A COL26A1 Missense_Mutation p.C83S 0.38 deleterious(0) probably_damaging(1) TCGA-B8-4151-01 7 136700327 136700327 A G CHRM2 Missense_Mutation p.R239G 0.06 tolerated(0.35) benign(0.002) TCGA-B8-4151-01 7 6731954 6731954 A - ZNF12 Frame_Shift_Del p.Y207Ifs*42 0.34 TCGA-B8-4151-01 8 67047249 67047249 C A TRIM55 Silent p.P122P 0.37 TCGA-B8-4151-01 9 136279971 136279971 C T REXO4 Missense_Mutation p.R129K 0.42 tolerated(1) benign(0.001) TCGA-B8-4151-01 X 152956789 152956789 T A SLC6A8 Missense_Mutation p.F142Y 0.22 tolerated(0.21) probably_damaging(0.999) TCGA-B8-4151-01 X 76890185 76890185 A C ATRX Missense_Mutation p.F1570C 0.33 probably_damaging(1) TCGA-B8-4153-01 10 105166476 105166476 G A PDCD11 Missense_Mutation p.A267T 0.29 deleterious(0.02) benign(0.07) TCGA-B8-4153-01 10 69797906 69797908 TCT - HERC4 In_Frame_Del p.D136del 0.35 TCGA-B8-4153-01 10 76928376 76928376 C T SAMD8 Missense_Mutation p.S251F 0.31 deleterious(0) probably_damaging(0.945) TCGA-B8-4153-01 11 1258216 1258216 G A MUC5B Missense_Mutation p.R1040H 0.36 unknown(0) TCGA-B8-4153-01 11 126294453 126294453 C A KIRREL3 3'UTR 0.36 TCGA-B8-4153-01 11 47602672 47602672 A T NDUFS3 Intron 0.46 TCGA-B8-4153-01 12 11546588 11546588 G T PRB2 Missense_Mutation p.P142T 0.27 tolerated(0.9) unknown(0) TCGA-B8-4153-01 12 32369298 32369298 G T BICD1 Nonsense_Mutation p.E111* 0.36 TCGA-B8-4153-01 12 51751134 51751134 T C GALNT6 Missense_Mutation p.Q534R 0.37 deleterious(0) probably_damaging(0.998) TCGA-B8-4153-01 12 56213245 56213245 C T ORMDL2 Silent p.S98S 0.29 TCGA-B8-4153-01 12 6710859 6710859 T G CHD4 Missense_Mutation p.D171A 0.05 deleterious(0) probably_damaging(0.96) TCGA-B8-4153-01 12 70983898 70983898 A C PTPRB Missense_Mutation p.N632K 0.38 deleterious(0.05) benign(0.105) TCGA-B8-4153-01 12 89917616 89917616 C T GALNT4 Silent p.L237L 0.37 TCGA-B8-4153-01 12 95546763 95546763 C A FGD6 Missense_Mutation p.D865Y 0.31 deleterious(0.02) possibly_damaging(0.492) TCGA-B8-4153-01 13 46946147 46946147 G A KIAA0226L Missense_Mutation p.A155V 0.05 tolerated(0.19) benign(0.004) TCGA-B8-4153-01 13 84454272 84454272 G A SLITRK1 Silent p.N457N 0.05 TCGA-B8-4153-01 13 96438228 96438228 G A DNAJC3 Missense_Mutation p.E371K 0.30 tolerated(0.22) benign(0.185) TCGA-B8-4153-01 14 106054550 106054550 C T IGHA2 Silent p.G61G 0.27 TCGA-B8-4153-01 14 24975760 24975760 G C CMA1 Missense_Mutation p.T87R 0.30 deleterious(0) probably_damaging(0.995) TCGA-B8-4153-01 14 31122776 31122776 A T SCFD1 Silent p.A279A 0.36 TCGA-B8-4153-01 15 75654746 75654746 G A MAN2C1 Missense_Mutation p.R316C 0.26 deleterious(0.03) benign(0.02) TCGA-B8-4153-01 16 51171323 51171323 T C SALL1 Silent p.S1225S 0.42 TCGA-B8-4153-01 16 53320220 53320220 T G CHD9 Silent p.V1718V 0.36 TCGA-B8-4153-01 16 64981435 64981435 C T CDH11 3'UTR 0.18 TCGA-B8-4153-01 16 88958664 88958664 C T CBFA2T3 Silent p.V203V 0.27 TCGA-B8-4153-01 16 8996027 8996027 A G USP7 Silent p.D653D 0.06 TCGA-B8-4153-01 17 1560044 1560044 C A PRPF8 Missense_Mutation p.W1839C 0.07 deleterious(0.01) probably_damaging(1) TCGA-B8-4153-01 17 61762880 61762880 C T MAP3K3 Silent p.L245L 0.35 TCGA-B8-4153-01 18 58039328 58039328 G T MC4R Missense_Mutation p.S85R 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-B8-4153-01 18 67872495 67872495 C A RTTN Nonsense_Mutation p.E30* 0.33 TCGA-B8-4153-01 19 15511126 15511126 C - AKAP8L Frame_Shift_Del p.G343Afs*10 0.20 TCGA-B8-4153-01 19 21106092 21106092 T C ZNF85 5'Flank 0.35 TCGA-B8-4153-01 19 36574074 36574074 G A WDR62 Missense_Mutation p.G494E 0.38 deleterious(0) probably_damaging(1) TCGA-B8-4153-01 19 39967115 39967115 G A SUPT5H 3'UTR 0.42 TCGA-B8-4153-01 19 40698354 40698354 C A MAP3K10 Missense_Mutation p.A139E 0.34 deleterious(0.03) probably_damaging(0.989) TCGA-B8-4153-01 19 41594486 41594486 C G CYP2A13 Missense_Mutation p.P37R 0.32 deleterious(0) probably_damaging(1) TCGA-B8-4153-01 19 41763495 41763495 G A AXL Missense_Mutation p.G765E 0.26 deleterious(0) probably_damaging(0.998) TCGA-B8-4153-01 19 49963012 49963012 G A ALDH16A1 Missense_Mutation p.D136N 0.37 deleterious(0.01) possibly_damaging(0.861) TCGA-B8-4153-01 19 51848472 51848472 C T ETFB Missense_Mutation p.R345Q 0.26 deleterious_low_confidence(0.03) benign(0.018) TCGA-B8-4153-01 19 52272624 52272624 G A FPR2 Missense_Mutation p.R238H 0.06 tolerated(0.1) possibly_damaging(0.458) TCGA-B8-4153-01 19 54695606 54695607 - CTT TSEN34 In_Frame_Ins p.F94dup 0.32 TCGA-B8-4153-01 19 55297923 55297923 G T KIR2DL1 3'Flank 0.34 TCGA-B8-4153-01 19 57876543 57876543 T G TRAPPC2P1 Missense_Mutation p.F114L 0.33 tolerated(0.1) probably_damaging(0.988) TCGA-B8-4153-01 19 7833849 7833849 C T CLEC4M Missense_Mutation p.P392L 0.35 deleterious(0.03) benign(0.386) TCGA-B8-4153-01 19 8616987 8616987 T C MYO1F Missense_Mutation p.N189S 0.04 deleterious(0) probably_damaging(0.967) TCGA-B8-4153-01 19 9677482 9677482 G A ZNF121 Missense_Mutation p.L103F 0.05 tolerated(0.2) benign(0.039) TCGA-B8-4153-01 19 9677483 9677483 A T ZNF121 Missense_Mutation p.H102Q 0.05 tolerated(0.29) benign(0.095) TCGA-B8-4153-01 1 109369917 109369917 T A AKNAD1 Missense_Mutation p.N616Y 0.32 deleterious(0) benign(0.229) TCGA-B8-4153-01 1 120254648 120254648 G A PHGDH Translation_Start_Site p.M1? 0.34 deleterious(0.01) possibly_damaging(0.509) TCGA-B8-4153-01 1 149903193 149903193 G C MTMR11 Missense_Mutation p.P417A 0.33 tolerated(0.06) probably_damaging(1) TCGA-B8-4153-01 1 152749010 152749010 A C LCE1F Missense_Mutation p.S55R 0.06 tolerated_low_confidence(0.27) unknown(0) TCGA-B8-4153-01 1 153934708 153934708 G T SLC39A1 Silent p.A102A 0.32 TCGA-B8-4153-01 1 153963625 153963625 A C RPS27 Missense_Mutation p.E14A 0.21 tolerated(0.16) benign(0.03) TCGA-B8-4153-01 1 155207294 155207294 C T GBA Silent p.L279L 0.36 TCGA-B8-4153-01 1 165414253 165414253 C T RXRG 5'UTR 0.44 TCGA-B8-4153-01 1 183102612 183102612 G A LAMC1 Missense_Mutation p.R1259K 0.29 tolerated(0.25) benign(0.001) TCGA-B8-4153-01 1 220091955 220091955 T - SLC30A10 Intron 0.42 TCGA-B8-4153-01 1 27440565 27440565 T G SLC9A1 Missense_Mutation p.I189L 0.40 deleterious(0.03) benign(0.12) TCGA-B8-4153-01 1 39877427 39877427 C T KIAA0754 Missense_Mutation p.A361V 0.41 possibly_damaging(0.682) TCGA-B8-4153-01 1 76252797 76252797 A C RABGGTB Intron 0.47 TCGA-B8-4153-01 1 76252833 76252833 C T RABGGTB Intron 0.37 TCGA-B8-4153-01 20 35772198 35772198 C A MROH8 Missense_Mutation p.L446F 0.38 tolerated(0.11) benign(0.057) TCGA-B8-4153-01 20 54824503 54824503 C A MC3R Missense_Mutation p.L202I 0.40 tolerated(0.08) probably_damaging(0.983) TCGA-B8-4153-01 20 60904899 60904899 C G LAMA5 Silent p.L1351L 0.47 TCGA-B8-4153-01 21 28338273 28338273 A - ADAMTS5 Frame_Shift_Del p.F146Lfs*20 0.26 TCGA-B8-4153-01 22 30074218 30074218 G A NF2 Missense_Mutation p.D494N 0.30 tolerated(0.08) possibly_damaging(0.579) TCGA-B8-4153-01 2 112767558 112767559 - A MERTK Frame_Shift_Ins p.P667Afs*68 0.29 TCGA-B8-4153-01 2 166930140 166930140 C T SCN1A 5'Flank 0.09 TCGA-B8-4153-01 2 223386656 223386656 C G SGPP2 Missense_Mutation p.D183E 0.04 tolerated(0.21) benign(0.098) TCGA-B8-4153-01 3 10188248 10188262 AACCAAACTGAATTA TTTTTT VHL In_Frame_Del p.N131_L135delinsFF 0.11 TCGA-B8-4153-01 3 10188262 10188262 A T VHL Missense_Mutation p.L135F 0.30 deleterious(0.02) probably_damaging(0.973) TCGA-B8-4153-01 3 124951653 124951653 A - ZNF148 Frame_Shift_Del p.Q640Sfs*7 0.29 TCGA-B8-4153-01 3 152018067 152018067 C T MBNL1 Missense_Mutation p.R29W 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-B8-4153-01 3 161214803 161214803 A T OTOL1 Missense_Mutation p.T70S 0.04 tolerated(0.19) unknown(0) TCGA-B8-4153-01 4 106156445 106156445 T A TET2 Missense_Mutation p.V449E 0.46 deleterious(0.04) benign(0.303) TCGA-B8-4153-01 4 144940457 144940457 G T GYPB 5'UTR 0.36 TCGA-B8-4153-01 4 56884018 56884018 G T CEP135 Nonsense_Mutation p.E1003* 0.37 TCGA-B8-4153-01 6 157520041 157520041 G C ARID1B Silent p.P1370P 0.33 TCGA-B8-4153-01 6 160969596 160969596 A G LPA Missense_Mutation p.L1690P 0.30 deleterious(0) probably_damaging(1) TCGA-B8-4153-01 6 33240470 33240470 G A RPS18 Silent p.R23R 0.42 TCGA-B8-4153-01 6 34100944 34100944 G T GRM4 Silent p.S110S 0.34 TCGA-B8-4153-01 6 41002579 41002579 A T UNC5CL Missense_Mutation p.F79I 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-B8-4153-01 6 41126749 41126749 C - TREM2 Frame_Shift_Del p.A180Pfs*9 0.22 TCGA-B8-4153-01 6 43402469 43402469 G A ABCC10 Silent p.R497R 0.36 TCGA-B8-4153-01 6 43479853 43479853 C A YIPF3 3'UTR 0.39 TCGA-B8-4153-01 6 71266647 71266647 G A FAM135A Intron 0.44 TCGA-B8-4153-01 7 129906711 129906711 C A CPA2 5'UTR 0.40 TCGA-B8-4153-01 8 105361731 105361731 G C DCSTAMP Silent p.L317L 0.05 TCGA-B8-4153-01 8 131073178 131073178 C G ASAP1 Missense_Mutation p.A947P 0.25 tolerated(0.48) benign(0.002) TCGA-B8-4153-01 8 131073179 131073179 C G ASAP1 Silent p.L946L 0.25 TCGA-B8-4153-01 8 17137538 17137538 G T VPS37A Missense_Mutation p.V239L 0.35 tolerated(0.56) benign(0.003) TCGA-B8-4153-01 8 74888490 74888490 C T TMEM70 5'UTR 0.40 TCGA-B8-4153-01 9 100308464 100308464 T G TMOD1 Intron 0.38 TCGA-B8-4153-01 9 140904474 140904474 A T CACNA1B Missense_Mutation p.N702I 0.09 deleterious(0) possibly_damaging(0.486) TCGA-B8-4153-01 9 21837965 21837965 T C MTAP Missense_Mutation p.C136R 0.09 deleterious(0) probably_damaging(0.999) TCGA-B8-4153-01 9 75540461 75540461 A G ALDH1A1 Missense_Mutation p.V191A 0.30 deleterious(0) benign(0.281) TCGA-B8-4153-01 9 95179200 95179200 A T OMD Missense_Mutation p.L214Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-B8-4153-01 9 98220440 98220440 C T PTCH1 Missense_Mutation p.S1008N 0.36 tolerated(0.78) benign(0.071) TCGA-B8-4153-01 X 15768234 15768234 C G CA5B Missense_Mutation p.P30A 0.08 tolerated_low_confidence(0.08) benign(0.062) TCGA-B8-4154-01 10 12070760 12070760 T A UPF2 Missense_Mutation p.T377S 0.30 tolerated(0.38) benign(0.17) TCGA-B8-4154-01 10 45602513 45602513 T C RSU1P2 RNA 0.23 TCGA-B8-4154-01 10 90497391 90497391 G T LIPK Splice_Site p.X224_splice 0.24 TCGA-B8-4154-01 11 60264961 60264961 C T MS4A12 Missense_Mutation p.P57L 0.41 deleterious(0) probably_damaging(0.988) TCGA-B8-4154-01 11 61504731 61504731 C T DAGLA Silent p.F483F 0.29 TCGA-B8-4154-01 11 64645686 64645686 G A EHD1 Missense_Mutation p.P84L 0.29 deleterious(0.02) possibly_damaging(0.78) TCGA-B8-4154-01 11 65349886 65349886 G A EHBP1L1 Silent p.V581V 0.24 TCGA-B8-4154-01 14 64545255 64545255 G C SYNE2 Silent p.G3698G 0.32 TCGA-B8-4154-01 14 70925981 70925981 A T ADAM21 Missense_Mutation p.T589S 0.33 tolerated(0.13) benign(0.05) TCGA-B8-4154-01 14 77327095 77327095 G A C14orf166B Silent p.P388P 0.36 TCGA-B8-4154-01 15 48493508 48493508 C A CTXN2 Missense_Mutation p.T4N 0.32 deleterious_low_confidence(0.03) benign(0) TCGA-B8-4154-01 15 74472524 74472524 C A STRA6 Missense_Mutation p.R673L 0.10 tolerated(0.06) benign(0.083) TCGA-B8-4154-01 15 95013580 95013580 C - MCTP2 Frame_Shift_Del p.F795Sfs*8 0.48 TCGA-B8-4154-01 16 68026474 68026474 C T DPEP2 Missense_Mutation p.R110H 0.23 tolerated(0.33) benign(0.013) TCGA-B8-4154-01 17 10551954 10551954 C T MYH3 Missense_Mutation p.D219N 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-B8-4154-01 17 2076117 2076117 G T SMG6 Missense_Mutation p.F1064L 0.30 tolerated(0.83) benign(0.027) TCGA-B8-4154-01 17 61907491 61907491 A G PSMC5 Splice_Site p.X89_splice 0.30 TCGA-B8-4154-01 18 42530906 42530906 G A SETBP1 Missense_Mutation p.C534Y 0.44 tolerated(1) probably_damaging(0.997) TCGA-B8-4154-01 18 42530907 42530907 C A SETBP1 Nonsense_Mutation p.C534* 0.43 TCGA-B8-4154-01 19 11979300 11979300 G T ZNF439 Silent p.G472G 0.32 TCGA-B8-4154-01 19 48258011 48258011 G T GLTSCR2 Missense_Mutation p.D306Y 0.29 deleterious(0) probably_damaging(0.948) TCGA-B8-4154-01 19 53489892 53489892 G T ZNF702P RNA 0.28 TCGA-B8-4154-01 19 53914054 53914054 T - ZNF765 3'UTR 0.21 TCGA-B8-4154-01 19 55451609 55451610 AG T NLRP7 Frame_Shift_Del p.L193Rfs*34 0.41 TCGA-B8-4154-01 1 152060504 152060504 C T TCHHL1 Missense_Mutation p.G39D 0.37 tolerated(0.05) possibly_damaging(0.891) TCGA-B8-4154-01 1 161093708 161093708 C A DEDD Silent p.L118L 0.34 TCGA-B8-4154-01 1 161647424 161647424 G T FCGR2B 3'UTR 0.43 TCGA-B8-4154-01 1 197029544 197029544 T C F13B Missense_Mutation p.I253V 0.32 tolerated(0.05) possibly_damaging(0.699) TCGA-B8-4154-01 1 198492507 198492507 A T ATP6V1G3 3'UTR 0.32 TCGA-B8-4154-01 1 208061326 208061326 A C CD34 Intron 0.27 TCGA-B8-4154-01 1 208207921 208207921 A G PLXNA2 Missense_Mutation p.V1594A 0.35 tolerated(0.17) benign(0.141) TCGA-B8-4154-01 1 220318884 220318884 C A IARS2 Missense_Mutation p.Q929K 0.38 deleterious(0.04) benign(0.407) TCGA-B8-4154-01 1 33796958 33796958 C T PHC2 Missense_Mutation p.C665Y 0.35 deleterious(0) probably_damaging(0.984) TCGA-B8-4154-01 1 85488090 85488090 G C MCOLN3 Intron 0.29 TCGA-B8-4154-01 20 32441650 32441650 T A CHMP4B 3'UTR 0.24 TCGA-B8-4154-01 20 34515757 34515757 A T PHF20 Missense_Mutation p.N687I 0.29 deleterious(0) probably_damaging(1) TCGA-B8-4154-01 2 113343969 113343969 T A CHCHD5 Intron 0.43 TCGA-B8-4154-01 2 207008817 207008817 C A NDUFS1 Missense_Mutation p.E318D 0.32 tolerated(0.63) benign(0.002) TCGA-B8-4154-01 2 220497001 220497001 C T SLC4A3 Silent p.N353N 0.42 TCGA-B8-4154-01 2 39250004 39250004 T C SOS1 Missense_Mutation p.N522S 0.37 tolerated(0.81) benign(0.006) TCGA-B8-4154-01 2 86350863 86350863 C T PTCD3 Missense_Mutation p.H232Y 0.06 tolerated(0.51) benign(0.285) TCGA-B8-4154-01 3 10191563 10191563 G T VHL Nonsense_Mutation p.E186* 0.53 TCGA-B8-4154-01 3 124646753 124646753 G T MUC13 Missense_Mutation p.T46N 0.29 tolerated(0.31) benign(0) TCGA-B8-4154-01 3 124646754 124646754 T A MUC13 Missense_Mutation p.T46S 0.30 tolerated(0.41) benign(0.005) TCGA-B8-4154-01 3 140122627 140122627 G C CLSTN2 Missense_Mutation p.G130A 0.31 deleterious(0) possibly_damaging(0.701) TCGA-B8-4154-01 3 156009880 156009880 A - KCNAB1 Intron 0.29 TCGA-B8-4154-01 3 168849313 168849314 AG - MECOM Frame_Shift_Del p.F48Lfs*2 0.39 TCGA-B8-4154-01 3 52682418 52682418 A C PBRM1 Missense_Mutation p.I252R 0.49 deleterious(0) possibly_damaging(0.602) TCGA-B8-4154-01 3 58923375 58923375 A C C3orf67 Missense_Mutation p.I6S 0.30 deleterious(0) possibly_damaging(0.742) TCGA-B8-4154-01 4 139144404 139144404 G A SLC7A11 Missense_Mutation p.L199F 0.37 deleterious(0.01) probably_damaging(1) TCGA-B8-4154-01 4 46976378 46976378 T C GABRA4 Missense_Mutation p.S198G 0.31 deleterious(0.01) possibly_damaging(0.528) TCGA-B8-4154-01 4 6303445 6303445 G A WFS1 Silent p.T641T 0.56 TCGA-B8-4154-01 5 1232438 1232438 G T SLC6A18 Missense_Mutation p.V89L 0.36 deleterious(0) possibly_damaging(0.883) TCGA-B8-4154-01 5 139866633 139866633 G A ANKHD1 Missense_Mutation p.G745R 0.31 unknown(0) TCGA-B8-4154-01 5 35921149 35921149 G C CAPSL Missense_Mutation p.P25R 0.34 deleterious(0) probably_damaging(0.957) TCGA-B8-4154-01 5 40947837 40947837 C A C7 Missense_Mutation p.A291D 0.28 deleterious(0) probably_damaging(0.928) TCGA-B8-4154-01 5 42808420 42808420 A G SEPP1 Silent p.C12C 0.08 TCGA-B8-4154-01 5 59284433 59284433 C T PDE4D Missense_Mutation p.A52T 0.39 tolerated_low_confidence(0.44) benign(0.386) TCGA-B8-4154-01 5 80911317 80911317 C A SSBP2 Missense_Mutation p.S86I 0.34 deleterious(0) probably_damaging(0.93) TCGA-B8-4154-01 6 29231822 29231822 A G XXbac-BPG308J9.3 RNA 0.43 TCGA-B8-4154-01 7 101187300 101187300 C T COL26A1 Missense_Mutation p.P209L 0.10 tolerated(0.37) benign(0.211) TCGA-B8-4154-01 7 22534457 22534457 G T STEAP1B Missense_Mutation p.D6E 0.29 deleterious_low_confidence(0.01) benign(0.155) TCGA-B8-4154-01 7 99145313 99145313 G A FAM200A Missense_Mutation p.H240Y 0.37 deleterious(0) probably_damaging(0.987) TCGA-B8-4154-01 8 55049858 55049858 C G MRPL15 Silent p.L98L 0.33 TCGA-B8-4154-01 8 55542213 55542213 T C RP1 Missense_Mutation p.I1924T 0.06 tolerated(0.62) benign(0.005) TCGA-B8-4154-01 9 115038125 115038125 T A PTBP3 Missense_Mutation p.Q102L 0.33 deleterious(0) possibly_damaging(0.903) TCGA-B8-4154-01 9 33675588 33675588 C T PTENP1 RNA 0.29 TCGA-B8-4154-01 X 148690436 148690436 C A TMEM185A Missense_Mutation p.V101F 0.32 deleterious(0.01) possibly_damaging(0.851) TCGA-B8-4154-01 X 151896050 151896050 G T MAGEA12 3'Flank 0.40 TCGA-B8-4154-01 X 54019191 54019191 C A PHF8 Missense_Mutation p.A606S 0.37 tolerated(0.95) benign(0.001) TCGA-B8-4619-01 11 61917569 61917569 A G INCENP Missense_Mutation p.H811R 0.08 tolerated(0.54) benign(0.068) TCGA-B8-4619-01 11 64514806 64514806 A C PYGM Missense_Mutation p.D734E 0.35 tolerated(1) benign(0) TCGA-B8-4619-01 11 7022784 7022784 T G ZNF214 Missense_Mutation p.N44H 0.43 tolerated(0.18) benign(0.219) TCGA-B8-4619-01 12 113303233 113303233 G A RPH3A Missense_Mutation p.R82H 0.26 deleterious(0.04) probably_damaging(0.955) TCGA-B8-4619-01 12 129558772 129558772 G C TMEM132D Missense_Mutation p.S983W 0.32 tolerated(0.07) possibly_damaging(0.85) TCGA-B8-4619-01 12 13716064 13716064 C T GRIN2B Missense_Mutation p.G1370R 0.38 tolerated(0.14) benign(0.394) TCGA-B8-4619-01 13 33110533 33110533 T C N4BP2L2 Intron 0.32 TCGA-B8-4619-01 14 24658576 24658576 G A TM9SF1 3'UTR 0.12 TCGA-B8-4619-01 15 75647015 75647015 G A NEIL1 Missense_Mutation p.A320T 0.35 tolerated(0.28) benign(0.006) TCGA-B8-4619-01 17 28961222 28961222 C G LRRC37BP1 RNA 0.33 TCGA-B8-4619-01 17 79180662 79180662 G A AZI1 Missense_Mutation p.P133S 0.30 deleterious(0.01) possibly_damaging(0.69) TCGA-B8-4619-01 19 53384636 53384636 T C ZNF320 Missense_Mutation p.N248S 0.35 tolerated(0.07) benign(0.217) TCGA-B8-4619-01 19 758484 758484 C T MISP Missense_Mutation p.A513V 0.09 tolerated(1) benign(0.003) TCGA-B8-4619-01 1 227071425 227071425 A G PSEN2 Missense_Mutation p.E54G 0.11 tolerated(0.19) benign(0.001) TCGA-B8-4619-01 1 39824504 39824504 T C MACF1 Missense_Mutation p.S1965P 0.08 possibly_damaging(0.892) TCGA-B8-4619-01 20 17641122 17641122 C T RRBP1 Missense_Mutation p.V11I 0.37 tolerated(0.5) possibly_damaging(0.874) TCGA-B8-4619-01 2 234237129 234237129 C T SAG Missense_Mutation p.S173F 0.36 deleterious(0.01) benign(0.299) TCGA-B8-4619-01 2 23977134 23977134 A C ATAD2B Missense_Mutation p.V1417G 0.34 deleterious(0) probably_damaging(0.996) TCGA-B8-4619-01 3 41288375 41288375 G A ULK4 3'UTR 0.35 TCGA-B8-4619-01 5 71499625 71499625 G A MAP1B Missense_Mutation p.M2416I 0.34 possibly_damaging(0.812) TCGA-B8-4619-01 7 111424166 111424166 C A DOCK4 Intron 0.14 TCGA-B8-4619-01 7 121636616 121636616 A T PTPRZ1 Missense_Mutation p.D370V 0.27 deleterious(0) probably_damaging(1) TCGA-B8-4619-01 9 132890996 132890996 C T GPR107 Silent p.Y554Y 0.33 TCGA-B8-4619-01 9 99581991 99581991 A - ZNF782 Frame_Shift_Del p.L105Yfs*7 0.23 TCGA-B8-4620-01 10 12162938 12162938 G A DHTKD1 3'UTR 0.10 TCGA-B8-4620-01 10 73590880 73590880 T C PSAP Intron 0.18 TCGA-B8-4620-01 11 308415 308415 A C IFITM2 Missense_Mutation p.I75L 0.43 tolerated(0.18) benign(0.314) TCGA-B8-4620-01 11 57518777 57518777 G - BTBD18 Intron 0.33 TCGA-B8-4620-01 11 94533327 94533327 T C AMOTL1 Missense_Mutation p.V324A 0.09 tolerated(0.54) benign(0.022) TCGA-B8-4620-01 12 105582196 105582196 G A APPL2 Missense_Mutation p.R503W 0.51 deleterious(0) probably_damaging(0.993) TCGA-B8-4620-01 12 80890073 80890073 G A PTPRQ Missense_Mutation p.A675T 0.23 deleterious(0.03) possibly_damaging(0.475) TCGA-B8-4620-01 13 23914058 23914058 C G SACS Missense_Mutation p.K1319N 0.42 probably_damaging(0.996) TCGA-B8-4620-01 13 23914059 23914059 T G SACS Missense_Mutation p.K1319T 0.43 probably_damaging(0.996) TCGA-B8-4620-01 13 51826047 51826047 A T FAM124A Missense_Mutation p.N218Y 0.25 deleterious(0) probably_damaging(0.978) TCGA-B8-4620-01 14 105246482 105246482 C T AKT1 Missense_Mutation p.E40K 0.32 tolerated(0.16) possibly_damaging(0.845) TCGA-B8-4620-01 14 93305910 93305910 T G GOLGA5 3'UTR 0.47 TCGA-B8-4620-01 15 45007703 45007705 TCA CC B2M Frame_Shift_Del p.H51Lfs*10 0.30 TCGA-B8-4620-01 15 69329501 69329501 C T NOX5 Missense_Mutation p.S441F 0.12 tolerated(0.14) possibly_damaging(0.706) TCGA-B8-4620-01 16 1510843 1510843 C A CLCN7 Missense_Mutation p.G153V 0.42 tolerated(0.14) benign(0.076) TCGA-B8-4620-01 17 26667402 26667402 C T TNFAIP1 Silent p.T91T 0.23 TCGA-B8-4620-01 17 34901611 34901611 A G GGNBP2 Missense_Mutation p.E13G 0.46 deleterious(0.01) possibly_damaging(0.448) TCGA-B8-4620-01 17 41738797 41738797 G T MEOX1 Missense_Mutation p.P36T 0.18 tolerated(0.06) benign(0.055) TCGA-B8-4620-01 17 62892204 62892204 T A LRRC37A3 Missense_Mutation p.E391V 0.38 deleterious(0.05) benign(0.109) TCGA-B8-4620-01 19 11664531 11664531 G A ELOF1 3'UTR 0.52 TCGA-B8-4620-01 19 16687161 16687161 T C MED26 Missense_Mutation p.S494G 0.11 deleterious(0.01) possibly_damaging(0.872) TCGA-B8-4620-01 19 54756788 54756788 G A LILRB5 Missense_Mutation p.L474F 0.16 tolerated(0.06) benign(0.047) TCGA-B8-4620-01 19 55341674 55341674 T - KIR3DL1 Frame_Shift_Del p.L427Cfs*51 0.29 TCGA-B8-4620-01 19 9070657 9070657 C T MUC16 Missense_Mutation p.V5597M 0.47 unknown(0) TCGA-B8-4620-01 1 152279186 152279186 C T FLG Missense_Mutation p.G2726S 0.57 benign(0.143) TCGA-B8-4620-01 1 152323999 152323999 C G FLG2 Missense_Mutation p.G2088A 0.50 probably_damaging(0.997) TCGA-B8-4620-01 1 160093045 160093045 G A ATP1A2 Missense_Mutation p.G74R 0.08 deleterious(0) probably_damaging(1) TCGA-B8-4620-01 1 185089094 185089094 T G TRMT1L 3'UTR 0.45 TCGA-B8-4620-01 1 196927137 196927137 C A CFHR2 Missense_Mutation p.Q183K 0.21 tolerated(0.33) benign(0.001) TCGA-B8-4620-01 1 207495818 207495818 A C CD55 Missense_Mutation p.K64N 0.26 deleterious(0.01) benign(0.253) TCGA-B8-4620-01 1 38274767 38274767 T C C1orf122 3'UTR 0.43 TCGA-B8-4620-01 1 70877012 70877014 CTT - CTH 5'UTR 0.47 TCGA-B8-4620-01 1 98164907 98164907 C T DPYD Missense_Mutation p.S227N 0.48 deleterious(0) benign(0.227) TCGA-B8-4620-01 20 60888399 60888399 C G LAMA5 Missense_Mutation p.D2926H 0.67 benign(0.006) TCGA-B8-4620-01 21 32007632 32007632 T G KRTAP20-2 Missense_Mutation p.V17G 0.09 unknown(0) TCGA-B8-4620-01 22 24580140 24580140 A C SUSD2 Missense_Mutation p.E159A 0.42 tolerated(0.7) benign(0.004) TCGA-B8-4620-01 22 24984203 24984204 - GCA FAM211B In_Frame_Ins p.L133dup 0.50 TCGA-B8-4620-01 2 112536274 112536274 G - ANAPC1 Frame_Shift_Del p.P1788Lfs*10 0.20 TCGA-B8-4620-01 2 201997707 201997707 A T CFLAR Intron 0.36 TCGA-B8-4620-01 2 46611722 46611723 GT - EPAS1 Frame_Shift_Del p.V846Efs*55 0.32 TCGA-B8-4620-01 2 88056472 88056472 T C PLGLB2 3'UTR 0.18 TCGA-B8-4620-01 3 10191489 10191489 G C VHL Missense_Mutation p.R161P 0.66 deleterious(0.01) probably_damaging(0.994) TCGA-B8-4620-01 3 167540830 167540830 G A SERPINI1 Missense_Mutation p.E346K 0.15 deleterious(0) probably_damaging(1) TCGA-B8-4620-01 3 47125280 47125289 TCTTGGCTCC - SETD2 Frame_Shift_Del p.R1994Nfs*9 0.74 TCGA-B8-4620-01 3 52643396 52643396 A - PBRM1 Frame_Shift_Del p.Y834Tfs*21 0.48 TCGA-B8-4620-01 3 69987112 69987112 G A MITF Missense_Mutation p.G165D 0.71 tolerated(0.14) possibly_damaging(0.457) TCGA-B8-4620-01 5 137846859 137846862 GTGT - ETF1 Frame_Shift_Del p.D297Gfs*12 0.40 TCGA-B8-4620-01 5 149907784 149907784 A G NDST1 Missense_Mutation p.D311G 0.13 deleterious(0) possibly_damaging(0.582) TCGA-B8-4620-01 5 180651556 180651556 G C TRIM41 Missense_Mutation p.C186S 0.30 deleterious(0) probably_damaging(0.994) TCGA-B8-4620-01 5 70840940 70840940 G T BDP1 Missense_Mutation p.G2213V 0.07 tolerated(0.4) benign(0.018) TCGA-B8-4620-01 6 105298826 105298826 A G HACE1 Silent p.Y59Y 0.33 TCGA-B8-4620-01 6 134495196 134495196 T C SGK1 Missense_Mutation p.K154E 0.28 tolerated(0.32) benign(0.138) TCGA-B8-4620-01 6 150715251 150715251 G C IYD Missense_Mutation p.E183Q 0.29 deleterious(0.05) benign(0.288) TCGA-B8-4620-01 6 43418521 43418521 C A DLK2 Missense_Mutation p.G303V 0.47 deleterious(0.03) benign(0.202) TCGA-B8-4620-01 6 46658611 46658611 A C TDRD6 Missense_Mutation p.K916Q 0.26 tolerated(0.18) benign(0.028) TCGA-B8-4620-01 7 51096089 51096089 C G COBL Missense_Mutation p.V902L 0.31 tolerated(0.28) benign(0.031) TCGA-B8-4620-01 8 37974168 37974168 G T ASH2L Missense_Mutation p.D260Y 0.26 deleterious(0) probably_damaging(0.956) TCGA-B8-4620-01 8 54978369 54978369 C T LYPLA1 Missense_Mutation p.G36R 0.48 deleterious(0.02) probably_damaging(0.968) TCGA-B8-4620-01 8 74527933 74527933 G C STAU2 Missense_Mutation p.R219G 0.19 deleterious(0) benign(0.132) TCGA-B8-4620-01 8 74527934 74527934 C A STAU2 Missense_Mutation p.K218N 0.19 deleterious(0) possibly_damaging(0.876) TCGA-B8-4620-01 X 135441581 135441581 G A GPR112 Missense_Mutation p.V2371I 0.24 tolerated(0.1) benign(0.108) TCGA-B8-4620-01 X 138729056 138729056 C T MCF2 Missense_Mutation p.R11Q 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-B8-4620-01 X 14882777 14882777 C A FANCB Missense_Mutation p.A286S 0.39 tolerated(1) benign(0.058) TCGA-B8-4620-01 X 30849594 30849594 G A TAB3 Missense_Mutation p.H697Y 0.47 deleterious(0) probably_damaging(0.993) TCGA-B8-4620-01 X 71360504 71360504 A G NHSL2 Missense_Mutation p.I1036V 0.42 tolerated(0.26) benign(0.084) TCGA-B8-4620-01 X 92927545 92927545 T C NAP1L3 Silent p.K253K 0.23 TCGA-B8-4621-01 10 103898406 103898406 G A PPRC1 Missense_Mutation p.V125M 0.21 tolerated(0.21) probably_damaging(0.994) TCGA-B8-4621-01 10 1229304 1229304 G - ADARB2 Frame_Shift_Del p.S683Rfs*27 0.28 TCGA-B8-4621-01 10 89720799 89720802 TACT - PTEN Frame_Shift_Del p.T319* 0.24 TCGA-B8-4621-01 11 129805103 129805103 C G PRDM10 Missense_Mutation p.E350D 0.28 tolerated(0.1) probably_damaging(0.987) TCGA-B8-4621-01 11 130286146 130286146 C T ADAMTS8 Missense_Mutation p.M392I 0.26 deleterious(0) probably_damaging(0.934) TCGA-B8-4621-01 11 26581451 26581451 A G MUC15 3'UTR 0.31 TCGA-B8-4621-01 11 3380467 3380467 A G ZNF195 Missense_Mutation p.S591P 0.28 deleterious(0.01) probably_damaging(0.91) TCGA-B8-4621-01 11 34482847 34482847 A G CAT Missense_Mutation p.N369S 0.25 deleterious(0) probably_damaging(0.999) TCGA-B8-4621-01 11 43283909 43283909 G A HNRNPKP3 RNA 0.29 TCGA-B8-4621-01 11 45925694 45925694 G C MAPK8IP1 Missense_Mutation p.E550Q 0.36 tolerated(0.31) possibly_damaging(0.608) TCGA-B8-4621-01 11 57471904 57471904 C G MED19 3'UTR 0.13 TCGA-B8-4621-01 11 64812680 64812680 A G NAALADL1 3'UTR 0.30 TCGA-B8-4621-01 11 65767901 65767901 C G EIF1AD 5'UTR 0.33 TCGA-B8-4621-01 11 67135087 67135089 CCA - CLCF1 In_Frame_Del p.W9del 0.37 TCGA-B8-4621-01 11 71153339 71153358 CTCCTACGTAGCCGGGTAGA GGTAGG DHCR7 Frame_Shift_Del p.G124Hfs*98 0.18 TCGA-B8-4621-01 11 71153358 71153358 A G DHCR7 Silent p.F121F 0.21 TCGA-B8-4621-01 12 1042154 1042154 A - RAD52 Frame_Shift_Del p.L24Yfs*20 0.20 TCGA-B8-4621-01 12 104341410 104341410 G A HSP90B1 Splice_Site p.X795_splice 0.21 TCGA-B8-4621-01 12 110290311 110290311 G C GLTP 3'UTR 0.19 TCGA-B8-4621-01 12 12483330 12483330 T A MANSC1 Silent p.A309A 0.23 TCGA-B8-4621-01 12 21028191 21028191 G C SLCO1B3 Missense_Mutation p.K250N 0.19 tolerated(0.15) benign(0.02) TCGA-B8-4621-01 13 27680064 27680064 G T USP12 Nonsense_Mutation p.Y49* 0.31 TCGA-B8-4621-01 13 53313233 53313233 G A LECT1 Missense_Mutation p.S49L 0.31 tolerated(0.37) benign(0.062) TCGA-B8-4621-01 13 78130015 78130015 C G SCEL Missense_Mutation p.S2C 0.30 deleterious(0) probably_damaging(0.986) TCGA-B8-4621-01 13 84454858 84454858 G A SLITRK1 Missense_Mutation p.P262L 0.23 deleterious(0) possibly_damaging(0.594) TCGA-B8-4621-01 14 105843135 105843135 C T PACS2 Missense_Mutation p.H278Y 0.56 tolerated(0.08) benign(0.377) TCGA-B8-4621-01 14 106173793 106173793 C G IGHA1 Missense_Mutation p.K258N 0.26 deleterious(0.01) possibly_damaging(0.668) TCGA-B8-4621-01 14 24709106 24709106 A T TINF2 Missense_Mutation p.F418Y 0.29 tolerated_low_confidence(0.16) benign(0.252) TCGA-B8-4621-01 14 45687640 45687640 G A MIS18BP1 Missense_Mutation p.P896L 0.29 deleterious(0) probably_damaging(0.994) TCGA-B8-4621-01 14 74180283 74180283 A G PNMA1 Silent p.A20A 0.30 TCGA-B8-4621-01 15 43307885 43307885 C A UBR1 Splice_Site p.X1070_splice 0.28 TCGA-B8-4621-01 15 69672243 69672243 C G PAQR5 Missense_Mutation p.L25V 0.27 tolerated(0.14) benign(0.01) TCGA-B8-4621-01 15 71952920 71952920 G - THSD4 Frame_Shift_Del p.V403Cfs*52 0.25 TCGA-B8-4621-01 15 85488371 85488371 C A SLC28A1 Missense_Mutation p.F630L 0.25 tolerated(0.21) benign(0.006) TCGA-B8-4621-01 16 1682305 1682305 G C CRAMP1L Missense_Mutation p.Q211H 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-B8-4621-01 16 2220688 2220688 C G TRAF7 Missense_Mutation p.S102C 0.32 tolerated(0.07) possibly_damaging(0.862) TCGA-B8-4621-01 16 24942355 24942355 G C ARHGAP17 Silent p.P755P 0.44 TCGA-B8-4621-01 16 3639200 3639200 C T SLX4 Missense_Mutation p.G1480E 0.56 deleterious(0) probably_damaging(0.979) TCGA-B8-4621-01 16 3843626 3843626 G A CREBBP Missense_Mutation p.S326F 0.21 benign(0.085) TCGA-B8-4621-01 16 425200 425200 T A TMEM8A Missense_Mutation p.I458F 0.44 tolerated(0.7) benign(0.374) TCGA-B8-4621-01 16 67401361 67401361 G T LRRC36 Splice_Site p.X399_splice 0.06 TCGA-B8-4621-01 17 11786998 11786998 C A DNAH9 Missense_Mutation p.F3634L 0.44 possibly_damaging(0.53) TCGA-B8-4621-01 17 30669149 30669149 A G C17orf75 Missense_Mutation p.S4P 0.48 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-B8-4621-01 17 39637366 39637366 A T KRT35 5'UTR 0.26 TCGA-B8-4621-01 17 59886033 59886033 G A BRIP1 Missense_Mutation p.T238I 0.44 deleterious(0) benign(0.162) TCGA-B8-4621-01 17 65960482 65960482 G C BPTF Missense_Mutation p.D2806H 0.41 probably_damaging(1) TCGA-B8-4621-01 17 67298930 67298930 T G ABCA5 Missense_Mutation p.S350R 0.43 tolerated(0.13) benign(0.278) TCGA-B8-4621-01 17 73758818 73758818 T - GALK1 Frame_Shift_Del p.S254Afs*10 0.47 TCGA-B8-4621-01 18 2538952 2538952 G C METTL4 3'UTR 0.37 TCGA-B8-4621-01 18 43664128 43664129 - T ATP5A1 3'UTR 0.25 TCGA-B8-4621-01 19 38383368 38383368 T C WDR87 Missense_Mutation p.H953R 0.33 possibly_damaging(0.626) TCGA-B8-4621-01 19 53454729 53454729 T - ZNF816 Frame_Shift_Del p.D100Vfs*7 0.20 TCGA-B8-4621-01 19 54744308 54744308 C T LILRA6 Missense_Mutation p.R367H 0.22 tolerated(0.36) benign(0.104) TCGA-B8-4621-01 19 8387788 8387788 A G KANK3 Missense_Mutation p.S801P 0.09 tolerated(0.1) possibly_damaging(0.504) TCGA-B8-4621-01 1 11168294 11168294 C T MTOR Silent p.E2526E 0.27 TCGA-B8-4621-01 1 16377067 16377067 C AT CLCNKB Frame_Shift_Ins p.P342Hfs*109 0.50 TCGA-B8-4621-01 1 17322948 17322948 G T ATP13A2 Missense_Mutation p.H413Q 0.27 deleterious(0) probably_damaging(0.962) TCGA-B8-4621-01 1 203652386 203652387 GT - ATP2B4 Frame_Shift_Del p.E19Rfs*26 0.27 TCGA-B8-4621-01 1 26385106 26385106 A C TRIM63 Missense_Mutation p.S202R 0.33 tolerated(0.05) possibly_damaging(0.719) TCGA-B8-4621-01 1 55527082 55527082 C T PCSK9 Silent p.G572G 0.50 TCGA-B8-4621-01 20 33501198 33501198 A G ACSS2 Missense_Mutation p.I157V 0.21 tolerated(1) benign(0.005) TCGA-B8-4621-01 20 37396132 37396132 C A ACTR5 Missense_Mutation p.L487M 0.21 deleterious(0.03) probably_damaging(0.988) TCGA-B8-4621-01 20 37623522 37623523 - C DHX35 Frame_Shift_Ins p.K215Qfs*7 0.43 TCGA-B8-4621-01 20 62698282 62698282 G C TCEA2 Silent p.G50G 0.53 TCGA-B8-4621-01 21 34042650 34042650 T C SYNJ1 Missense_Mutation p.I626V 0.24 tolerated(0.33) probably_damaging(0.998) TCGA-B8-4621-01 21 47783470 47783470 G A PCNT Missense_Mutation p.E744K 0.26 possibly_damaging(0.636) TCGA-B8-4621-01 22 45740382 45740382 G C SMC1B 3'UTR 0.28 TCGA-B8-4621-01 2 138033500 138033500 C A THSD7B Missense_Mutation p.P802T 0.27 tolerated(1) possibly_damaging(0.803) TCGA-B8-4621-01 2 231973291 231973291 A G HTR2B Silent p.D462D 0.27 TCGA-B8-4621-01 2 31571778 31571778 G T XDH Missense_Mutation p.P1013H 0.32 tolerated(0.15) benign(0.008) TCGA-B8-4621-01 2 39008932 39008932 T G GEMIN6 Silent p.T134T 0.31 TCGA-B8-4621-01 2 39285889 39285889 G T SOS1 Silent p.A90A 0.32 TCGA-B8-4621-01 2 58350342 58350342 C - VRK2 Frame_Shift_Del p.S218Afs*8 0.24 TCGA-B8-4621-01 2 58358987 58358987 C T VRK2 Silent p.L241L 0.32 TCGA-B8-4621-01 3 10326626 10326626 A C GHRL 3'Flank 0.25 TCGA-B8-4621-01 3 140675511 140675511 C - SLC25A36 Frame_Shift_Del p.G63Dfs*6 0.44 TCGA-B8-4621-01 3 186761061 186761061 G A ST6GAL1 Silent p.A190A 0.23 TCGA-B8-4621-01 4 187549904 187549904 A T FAT1 Missense_Mutation p.V1446E 0.25 probably_damaging(0.995) TCGA-B8-4621-01 4 86237 86237 G A Z95704.2 RNA 0.39 TCGA-B8-4621-01 4 88293948 88293948 G A HSD17B11 Missense_Mutation p.P157L 0.28 deleterious(0) probably_damaging(0.999) TCGA-B8-4621-01 5 123982880 123982880 A G ZNF608 Missense_Mutation p.V1066A 0.21 tolerated(0.15) probably_damaging(0.991) TCGA-B8-4621-01 5 140559876 140559876 T C PCDHB8 Missense_Mutation p.V754A 0.28 deleterious_low_confidence(0.02) benign(0.354) TCGA-B8-4621-01 5 149562381 149562381 C A CDX1 Missense_Mutation p.R166S 0.30 deleterious(0) probably_damaging(0.998) TCGA-B8-4621-01 5 150444657 150444657 G A TNIP1 5'UTR 0.26 TCGA-B8-4621-01 5 65288621 65288621 T C ERBB2IP Silent p.T25T 0.33 TCGA-B8-4621-01 5 96253377 96253377 G T ERAP2 3'UTR 0.27 TCGA-B8-4621-01 6 124979381 124979381 G - NKAIN2 Frame_Shift_Del p.W108* 0.26 TCGA-B8-4621-01 6 136590615 136590615 G T BCLAF1 Missense_Mutation p.P727T 0.05 tolerated(0.39) possibly_damaging(0.803) TCGA-B8-4621-01 6 27420285 27420285 T A ZNF184 Missense_Mutation p.E351D 0.22 tolerated(0.39) possibly_damaging(0.857) TCGA-B8-4621-01 6 39162421 39162421 C G KCNK5 Silent p.G138G 0.28 TCGA-B8-4621-01 6 41658461 41658461 G A TFEB Silent p.G136G 0.22 TCGA-B8-4621-01 6 51917916 51917916 A G PKHD1 Missense_Mutation p.F700L 0.30 tolerated(0.27) benign(0.02) TCGA-B8-4621-01 7 108143077 108143077 T A PNPLA8 Missense_Mutation p.I406F 0.21 deleterious(0) possibly_damaging(0.822) TCGA-B8-4621-01 7 142458497 142458497 C A PRSS1 Silent p.G44G 0.33 TCGA-B8-4621-01 7 56147618 56147618 T G SUMF2 3'UTR 0.27 TCGA-B8-4621-01 7 87795203 87795203 C A ADAM22 Nonsense_Mutation p.C711* 0.24 TCGA-B8-4621-01 7 91503926 91503926 T G MTERF Missense_Mutation p.K61T 0.22 deleterious(0.05) benign(0.093) TCGA-B8-4621-01 7 99693479 99693479 T C MCM7 Missense_Mutation p.I505V 0.11 tolerated(0.09) benign(0.029) TCGA-B8-4621-01 9 101832245 101832245 A C COL15A1 3'UTR 0.42 TCGA-B8-4621-01 9 115925356 115925356 C G SLC31A2 3'UTR 0.27 TCGA-B8-4621-01 9 133333871 133333871 C A ASS1 Silent p.R86R 0.29 TCGA-B8-4621-01 9 138662896 138662896 G A KCNT1 Missense_Mutation p.E655K 0.39 tolerated(0.24) benign(0.018) TCGA-B8-4621-01 9 140139762 140139762 G T FAM166A Missense_Mutation p.H173Q 0.35 tolerated(0.33) benign(0.001) TCGA-B8-4621-01 9 15729739 15729739 G C CCDC171 Missense_Mutation p.K664N 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-B8-4621-01 9 32633474 32633474 A T TAF1L Missense_Mutation p.Y702N 0.28 deleterious(0) probably_damaging(0.998) TCGA-B8-4621-01 9 86592692 86592692 G T HNRNPK Missense_Mutation p.P23H 0.28 deleterious(0) probably_damaging(1) TCGA-B8-4621-01 9 96863956 96863956 G A PTPDC1 Missense_Mutation p.V706I 0.25 tolerated(0.39) benign(0.071) TCGA-B8-4621-01 X 151303310 151303310 G T MAGEA10 Missense_Mutation p.H261Q 0.49 tolerated(0.07) probably_damaging(0.984) TCGA-B8-4621-01 X 53579648 53579648 G T HUWE1 Missense_Mutation p.Q2901K 0.50 benign(0.042) TCGA-B8-5158-01 10 15154856 15154856 T C NMT2 Missense_Mutation p.N426S 0.11 deleterious(0.03) benign(0.05) TCGA-B8-5158-01 10 375466 375466 G C DIP2C Silent p.A1220A 0.10 TCGA-B8-5158-01 10 89717762 89717762 A T PTEN Nonsense_Mutation p.K263* 0.14 TCGA-B8-5158-01 11 118940211 118940211 C G VPS11 Missense_Mutation p.F131L 0.17 tolerated(0.75) benign(0.03) TCGA-B8-5158-01 11 372684 372684 T C B4GALNT4 Missense_Mutation p.M93T 0.14 tolerated(0.6) benign(0.011) TCGA-B8-5158-01 11 65268083 65268083 A G MALAT1 RNA 0.16 TCGA-B8-5158-01 12 58140428 58140428 G C TSPAN31 Silent p.L123L 0.11 TCGA-B8-5158-01 13 103474191 103474191 T C BIVM-ERCC5 Missense_Mutation p.L239P 0.20 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-B8-5158-01 13 103474193 103474193 A T BIVM-ERCC5 Missense_Mutation p.M240L 0.20 deleterious_low_confidence(0.04) benign(0.14) TCGA-B8-5158-01 13 26974672 26974672 C T CDK8 Missense_Mutation p.P339L 0.11 deleterious(0) probably_damaging(0.935) TCGA-B8-5158-01 14 44975274 44975274 G T FSCB Missense_Mutation p.A306D 0.20 tolerated(0.07) possibly_damaging(0.855) TCGA-B8-5158-01 15 73590937 73590937 T C NEO1 Silent p.L1384L 0.12 TCGA-B8-5158-01 15 80253472 80253472 C T BCL2A1 Missense_Mutation p.M155I 0.09 tolerated(0.38) benign(0.002) TCGA-B8-5158-01 17 10426861 10426861 C A MYH2 Missense_Mutation p.Q1808H 0.15 deleterious(0) probably_damaging(0.938) TCGA-B8-5158-01 17 1585301 1585301 T - PRPF8 Frame_Shift_Del p.R156Efs*28 0.17 TCGA-B8-5158-01 17 33464021 33464021 T G NLE1 Missense_Mutation p.D276A 0.08 tolerated(0.15) benign(0.15) TCGA-B8-5158-01 17 38244655 38244656 TC - THRA Frame_Shift_Del p.S296Rfs*5 0.12 TCGA-B8-5158-01 17 5290385 5290385 G A NUP88 Silent p.L654L 0.15 TCGA-B8-5158-01 17 56603081 56603081 C A SEPT4 Silent p.R186R 0.11 TCGA-B8-5158-01 17 73485346 73485346 G A KIAA0195 Splice_Site p.X255_splice 0.09 TCGA-B8-5158-01 18 47432966 47432966 A T MYO5B Missense_Mutation p.I746N 0.07 deleterious(0) probably_damaging(0.996) TCGA-B8-5158-01 18 72346178 72346178 A C ZNF407 Missense_Mutation p.E1068A 0.21 deleterious(0) probably_damaging(0.998) TCGA-B8-5158-01 19 11917136 11917136 T A ZNF491 Missense_Mutation p.V123E 0.15 tolerated(0.9) benign(0.005) TCGA-B8-5158-01 19 3179761 3179764 GCGG - S1PR4 Frame_Shift_Del p.G325Vfs*30 0.16 TCGA-B8-5158-01 1 151955649 151955649 C A S100A10 Missense_Mutation p.G95V 0.13 deleterious(0) possibly_damaging(0.516) TCGA-B8-5158-01 1 152283060 152283060 G T FLG Missense_Mutation p.S1434R 0.12 benign(0.307) TCGA-B8-5158-01 1 160261217 160261217 T C COPA Missense_Mutation p.N1119D 0.19 deleterious(0.05) possibly_damaging(0.68) TCGA-B8-5158-01 1 16257994 16257994 T C SPEN Silent p.P1753P 0.15 TCGA-B8-5158-01 1 16257995 16257995 G A SPEN Missense_Mutation p.D1754N 0.14 benign(0.004) TCGA-B8-5158-01 1 16262076 16262076 C G SPEN Missense_Mutation p.P3114R 0.18 probably_damaging(0.98) TCGA-B8-5158-01 1 176015396 176015396 A G RFWD2 Missense_Mutation p.Y448H 0.04 deleterious(0) probably_damaging(0.91) TCGA-B8-5158-01 1 177199237 177199237 G T BRINP2 Missense_Mutation p.M75I 0.13 tolerated(0.32) benign(0.002) TCGA-B8-5158-01 1 183204764 183204764 T G LAMC2 Nonsense_Mutation p.Y785* 0.14 TCGA-B8-5158-01 1 19465596 19465596 T C UBR4 Silent p.S2904S 0.04 TCGA-B8-5158-01 1 32842063 32842063 A T BSDC1 Missense_Mutation p.L336Q 0.16 tolerated(0.59) benign(0.005) TCGA-B8-5158-01 1 78325069 78325069 C A FAM73A Missense_Mutation p.Q396K 0.14 tolerated(0.06) possibly_damaging(0.654) TCGA-B8-5158-01 20 15967789 15967789 A C MACROD2 Missense_Mutation p.K380T 0.17 tolerated_low_confidence(0.15) benign(0.073) TCGA-B8-5158-01 20 42344673 42344673 G T MYBL2 Missense_Mutation p.Q683H 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-B8-5158-01 20 50776871 50776871 C - ZFP64 Frame_Shift_Del p.S185Tfs*6 0.19 TCGA-B8-5158-01 20 60921136 60921136 C T LAMA5 Splice_Site p.X473_splice 0.10 TCGA-B8-5158-01 22 41574794 41574794 A G EP300 Missense_Mutation p.E2360G 0.12 benign(0.145) TCGA-B8-5158-01 22 42273293 42273293 C T SREBF2 Missense_Mutation p.L483F 0.09 tolerated(0.06) probably_damaging(0.999) TCGA-B8-5158-01 22 45937233 45937233 G C FBLN1 Missense_Mutation p.E349D 0.20 tolerated(0.23) possibly_damaging(0.874) TCGA-B8-5158-01 22 50903272 50903272 T C SBF1 Silent p.E469E 0.07 TCGA-B8-5158-01 2 118854300 118854300 G A INSIG2 Silent p.T56T 0.06 TCGA-B8-5158-01 2 152300220 152300220 T G RIF1 Missense_Mutation p.N661K 0.14 tolerated(0.06) possibly_damaging(0.77) TCGA-B8-5158-01 2 219232614 219232614 T G C2orf62 Missense_Mutation p.L364W 0.18 deleterious(0.04) probably_damaging(0.995) TCGA-B8-5158-01 2 242179325 242179325 G A HDLBP Silent p.I794I 0.12 TCGA-B8-5158-01 2 37486752 37486752 G T PRKD3 Missense_Mutation p.L707I 0.10 deleterious(0) probably_damaging(0.988) TCGA-B8-5158-01 2 86732851 86732851 G T CHMP3 3'UTR 0.19 TCGA-B8-5158-01 3 120495384 120495384 C T GTF2E1 Silent p.V255V 0.17 TCGA-B8-5158-01 3 172607188 172607188 G T SPATA16 3'UTR 0.20 TCGA-B8-5158-01 3 52678806 52678806 C T PBRM1 Splice_Site p.X272_splice 0.11 TCGA-B8-5158-01 3 66502055 66502055 T C LRIG1 Missense_Mutation p.Y98C 0.11 deleterious(0.03) possibly_damaging(0.852) TCGA-B8-5158-01 4 164050358 164050358 A G NAF1 Silent p.P392P 0.17 TCGA-B8-5158-01 4 8009692 8009692 C A ABLIM2 Intron 0.13 TCGA-B8-5158-01 5 140594137 140594137 C T PCDHB13 Missense_Mutation p.P148S 0.13 tolerated_low_confidence(0.24) benign(0.003) TCGA-B8-5158-01 5 31468136 31468136 C T DROSHA Missense_Mutation p.R759H 0.06 deleterious(0) probably_damaging(0.978) TCGA-B8-5158-01 5 64907630 64907630 C G TRIM23 Missense_Mutation p.E149Q 0.18 tolerated(0.27) benign(0.193) TCGA-B8-5158-01 6 106975346 106975346 G A AIM1 Splice_Site p.X1118_splice 0.06 TCGA-B8-5158-01 6 27860781 27860781 C G HIST1H2AM Silent p.P49P 0.14 TCGA-B8-5158-01 6 29555969 29555969 T - OR2H2 Frame_Shift_Del p.L83Pfs*31 0.23 TCGA-B8-5158-01 6 30891256 30891256 C T VARS2 Missense_Mutation p.L844F 0.06 deleterious(0) probably_damaging(0.979) TCGA-B8-5158-01 6 7373597 7373597 C A CAGE1 Missense_Mutation p.L485F 0.09 deleterious(0.04) probably_damaging(0.986) TCGA-B8-5158-01 7 117199625 117199625 C A CFTR Silent p.G500G 0.12 TCGA-B8-5158-01 7 123517219 123517219 G C HYAL4 3'UTR 0.13 TCGA-B8-5158-01 7 148876816 148876816 T A ZNF398 Missense_Mutation p.S618T 0.10 tolerated_low_confidence(0.35) benign(0.002) TCGA-B8-5158-01 7 150784022 150784022 A C AGAP3 Missense_Mutation p.N65T 0.24 deleterious(0.04) possibly_damaging(0.755) TCGA-B8-5158-01 7 31682989 31682989 A G CCDC129 Missense_Mutation p.K695E 0.12 tolerated(0.35) benign(0.205) TCGA-B8-5158-01 7 44801378 44801378 C G ZMIZ2 Missense_Mutation p.S490R 0.12 tolerated(0.05) possibly_damaging(0.755) TCGA-B8-5158-01 7 5752486 5752486 G T RNF216 Silent p.L614L 0.12 TCGA-B8-5158-01 8 9623811 9623811 G A TNKS Missense_Mutation p.G1206R 0.07 deleterious(0) probably_damaging(0.999) TCGA-B8-5158-01 9 133911635 133911635 G C LAMC3 Missense_Mutation p.G298R 0.14 deleterious(0.02) probably_damaging(1) TCGA-B8-5158-01 9 140040311 140040311 C T GRIN1 Missense_Mutation p.A176V 0.18 tolerated(0.64) benign(0.023) TCGA-B8-5158-01 9 39085772 39085772 A C CNTNAP3 Missense_Mutation p.F1135V 0.13 deleterious(0) probably_damaging(0.938) TCGA-B8-5159-01 10 112341762 112341762 T C SMC3 Missense_Mutation p.L210P 0.31 deleterious(0) probably_damaging(0.998) TCGA-B8-5159-01 10 75553698 75553698 T G ZSWIM8 Missense_Mutation p.L841V 0.32 tolerated(0.07) probably_damaging(0.913) TCGA-B8-5159-01 11 12315780 12315780 T A MICALCL Missense_Mutation p.S268T 0.44 deleterious(0) probably_damaging(0.999) TCGA-B8-5159-01 11 18194921 18194921 G T MRGPRX4 Missense_Mutation p.V40F 0.32 tolerated(0.05) benign(0.072) TCGA-B8-5159-01 11 68522400 68522400 C T CPT1A 3'UTR 0.19 TCGA-B8-5159-01 11 71153366 71153366 G C DHCR7 Missense_Mutation p.H119D 0.28 deleterious_low_confidence(0.01) probably_damaging(0.925) TCGA-B8-5159-01 11 88911150 88911151 - A TYR Frame_Shift_Ins p.W11Vfs*12 0.43 TCGA-B8-5159-01 12 121712085 121712085 G C CAMKK2 Missense_Mutation p.P82R 0.39 deleterious_low_confidence(0.01) benign(0.258) TCGA-B8-5159-01 12 122962402 122962402 A G ZCCHC8 Missense_Mutation p.M444T 0.31 deleterious(0) probably_damaging(0.989) TCGA-B8-5159-01 12 126135244 126135244 C T TMEM132B Silent p.S548S 0.33 TCGA-B8-5159-01 12 27835400 27835400 T C PPFIBP1 Silent p.N715N 0.27 TCGA-B8-5159-01 12 57110097 57110097 G A NACA Intron 0.41 TCGA-B8-5159-01 12 97303613 97303613 G C NEDD1 Missense_Mutation p.D33H 0.29 tolerated(0.11) probably_damaging(0.957) TCGA-B8-5159-01 13 41525466 41525466 T A ELF1 Silent p.I120I 0.47 TCGA-B8-5159-01 14 24588354 24588354 G C DCAF11 Missense_Mutation p.R260S 0.33 tolerated(0.61) benign(0.004) TCGA-B8-5159-01 14 75230551 75230551 A - YLPM1 Frame_Shift_Del p.Q120Rfs*99 0.43 TCGA-B8-5159-01 15 27128585 27128585 C A GABRA5 Missense_Mutation p.S126R 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-B8-5159-01 15 53957926 53957926 A T WDR72 Missense_Mutation p.I602N 0.35 tolerated(0.4) benign(0.365) TCGA-B8-5159-01 15 85326473 85326477 TCCGG - ZNF592 Frame_Shift_Del p.P190Sfs*7 0.39 TCGA-B8-5159-01 16 15724209 15724210 - G KIAA0430 Frame_Shift_Ins p.R502Qfs*17 0.33 TCGA-B8-5159-01 16 58555184 58555184 G A CNOT1 Missense_Mutation p.P2319S 0.33 deleterious(0) probably_damaging(1) TCGA-B8-5159-01 16 66670397 66670397 A G CMTM4 Missense_Mutation p.C92R 0.36 deleterious(0) probably_damaging(0.999) TCGA-B8-5159-01 17 19284305 19284305 C G MAPK7 Silent p.L261L 0.49 TCGA-B8-5159-01 17 39643651 39643651 T A KRT36 Missense_Mutation p.R313S 0.42 deleterious(0) benign(0.341) TCGA-B8-5159-01 17 61973929 61973929 A T CSH1 5'UTR 0.32 TCGA-B8-5159-01 19 10799989 10799989 G C ILF3 3'UTR 0.29 TCGA-B8-5159-01 19 36340202 36340202 T C NPHS1 Missense_Mutation p.Q259R 0.32 tolerated(0.42) benign(0.042) TCGA-B8-5159-01 1 113244079 113244079 G T RHOC 3'UTR 0.45 TCGA-B8-5159-01 1 151820729 151820729 C G THEM5 Missense_Mutation p.E168D 0.29 tolerated(0.35) probably_damaging(0.985) TCGA-B8-5159-01 1 156568885 156568885 G C GPATCH4 Intron 0.22 TCGA-B8-5159-01 1 176738772 176738772 G C PAPPA2 Silent p.G1451G 0.31 TCGA-B8-5159-01 1 200377519 200377519 C T ZNF281 Missense_Mutation p.V439I 0.06 deleterious(0.04) probably_damaging(0.978) TCGA-B8-5159-01 1 36926350 36926350 G A MRPS15 Nonsense_Mutation p.Q110* 0.29 TCGA-B8-5159-01 1 53686011 53686011 G C C1orf123 Missense_Mutation p.I4M 0.26 deleterious(0) probably_damaging(0.959) TCGA-B8-5159-01 1 62330119 62330119 A G INADL Silent p.S883S 0.27 TCGA-B8-5159-01 1 70671195 70671195 T C LRRC40 Missense_Mutation p.Q10R 0.29 tolerated(0.59) benign(0) TCGA-B8-5159-01 20 33576045 33576054 TGCATCGACC - MYH7B Frame_Shift_Del p.C565Sfs*80 0.21 TCGA-B8-5159-01 21 45152325 45152325 T G PDXK Intron 0.26 TCGA-B8-5159-01 2 207174466 207174466 A T ZDBF2 Missense_Mutation p.E1738D 0.27 tolerated(0.1) benign(0.217) TCGA-B8-5159-01 2 43452470 43452470 A G ZFP36L2 Missense_Mutation p.L158P 0.15 deleterious(0) probably_damaging(0.995) TCGA-B8-5159-01 2 55562094 55562094 T G CCDC88A Missense_Mutation p.K621N 0.26 deleterious(0) probably_damaging(0.999) TCGA-B8-5159-01 2 71190718 71190718 C A ATP6V1B1 Silent p.I359I 0.22 TCGA-B8-5159-01 2 71658543 71658543 T C ZNF638 Missense_Mutation p.S1913P 0.24 tolerated(1) benign(0.001) TCGA-B8-5159-01 2 98375417 98375417 G T TMEM131 Missense_Mutation p.P1769Q 0.33 deleterious_low_confidence(0.05) benign(0.368) TCGA-B8-5159-01 3 10191536 10191536 A T VHL Nonsense_Mutation p.R177* 0.57 TCGA-B8-5159-01 3 178921334 178921334 T A PIK3CA Nonsense_Mutation p.Y272* 0.40 TCGA-B8-5159-01 3 32932071 32932071 G C TRIM71 Missense_Mutation p.V459L 0.51 tolerated(0.38) benign(0.005) TCGA-B8-5159-01 3 33481335 33481335 G T UBP1 Silent p.A2A 0.50 TCGA-B8-5159-01 4 159627355 159627355 G C ETFDH Missense_Mutation p.E434Q 0.32 tolerated(0.48) benign(0.121) TCGA-B8-5159-01 4 62812747 62812747 C T LPHN3 Silent p.V777V 0.32 TCGA-B8-5159-01 5 10988319 10988319 G T CTNND2 Missense_Mutation p.L1083I 0.20 tolerated(0.91) benign(0.074) TCGA-B8-5159-01 5 131705726 131705728 TCT - SLC22A5 In_Frame_Del p.F23del 0.41 TCGA-B8-5159-01 5 133914214 133914214 G C JADE2 Missense_Mutation p.G527A 0.47 tolerated(0.22) possibly_damaging(0.683) TCGA-B8-5159-01 5 134344575 134344575 A C CATSPER3 Missense_Mutation p.E240D 0.50 tolerated(0.42) benign(0.003) TCGA-B8-5159-01 5 68581285 68581285 G C CCDC125 Nonsense_Mutation p.S370* 0.25 TCGA-B8-5159-01 5 90086882 90086882 G C GPR98 Missense_Mutation p.E4746Q 0.26 probably_damaging(0.932) TCGA-B8-5159-01 6 112575349 112575349 C G LAMA4 Missense_Mutation p.A2P 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.682) TCGA-B8-5159-01 6 161537951 161537951 G T MAP3K4 3'UTR 0.42 TCGA-B8-5159-01 7 117003505 117003505 A T ASZ1 3'UTR 0.45 TCGA-B8-5159-01 7 130044447 130044447 T C CEP41 Missense_Mutation p.N127S 0.37 tolerated(0.11) benign(0.002) TCGA-B8-5159-01 8 135524782 135524782 T G ZFAT Missense_Mutation p.E1099D 0.31 tolerated(0.16) possibly_damaging(0.675) TCGA-B8-5159-01 8 1728748 1728748 G C CLN8 3'UTR 0.23 TCGA-B8-5159-01 8 55533660 55533660 A C RP1 Missense_Mutation p.D45A 0.29 deleterious(0) probably_damaging(1) TCGA-B8-5159-01 9 37441467 37441467 A C ZBTB5 Missense_Mutation p.V361G 0.30 tolerated_low_confidence(0.59) benign(0) TCGA-B8-5159-01 X 101615563 101615563 C A NXF2B Nonsense_Mutation p.E614* 0.34 TCGA-B8-5159-01 X 133511646 133511646 T C PHF6 5'UTR 0.54 TCGA-B8-5159-01 X 152128271 152128271 G C ZNF185 Missense_Mutation p.V511L 0.09 tolerated(0.07) benign(0.068) TCGA-B8-5159-01 X 66765719 66765719 C T AR Missense_Mutation p.S244L 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B8-5159-01 X 70320778 70320778 G A FOXO4 Missense_Mutation p.G233D 0.16 tolerated(0.34) benign(0.04) TCGA-B8-5162-01 10 118327269 118327269 A G PNLIP Missense_Mutation p.T453A 0.05 deleterious(0.05) benign(0.09) TCGA-B8-5162-01 10 127422205 127422205 A T EDRF1 Silent p.A426A 0.10 TCGA-B8-5162-01 10 46159260 46159260 T C ZFAND4 5'UTR 0.12 TCGA-B8-5162-01 10 61413932 61413932 C T SLC16A9 Silent p.K284K 0.14 TCGA-B8-5162-01 10 7786219 7786220 AC - ITIH2 Frame_Shift_Del p.T796Gfs*24 0.15 TCGA-B8-5162-01 10 99349705 99349705 A T C10orf62 Silent p.P17P 0.15 TCGA-B8-5162-01 11 32953290 32953290 C A QSER1 Silent p.G33G 0.17 TCGA-B8-5162-01 11 46772146 46772146 T C CKAP5 Missense_Mutation p.K1826E 0.06 deleterious(0.01) possibly_damaging(0.497) TCGA-B8-5162-01 11 65273446 65273446 G C MALAT1 RNA 0.17 TCGA-B8-5162-01 12 42745776 42745776 T A PPHLN1 Missense_Mutation p.S54R 0.14 tolerated(0.08) benign(0.025) TCGA-B8-5162-01 12 55945275 55945275 G T OR6C4 Missense_Mutation p.V89F 0.05 deleterious_low_confidence(0) benign(0.073) TCGA-B8-5162-01 12 85460535 85460535 A T LRRIQ1 Missense_Mutation p.I852F 0.17 deleterious(0) probably_damaging(0.987) TCGA-B8-5162-01 12 8693386 8693386 G A CLEC4E Missense_Mutation p.S3L 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.617) TCGA-B8-5162-01 14 23902427 23902427 C T MYH7 Missense_Mutation p.V71M 0.08 deleterious(0) possibly_damaging(0.631) TCGA-B8-5162-01 14 92915516 92915516 A G SLC24A4 Missense_Mutation p.Y279C 0.05 tolerated(0.18) benign(0) TCGA-B8-5162-01 14 93483124 93483124 T G ITPK1 Missense_Mutation p.E48A 0.15 tolerated(0.05) benign(0.302) TCGA-B8-5162-01 14 96010330 96010330 C T GLRX5 Silent p.L114L 0.21 TCGA-B8-5162-01 15 41988785 41988785 C T MGA Missense_Mutation p.S526L 0.11 deleterious(0.01) benign(0.091) TCGA-B8-5162-01 15 64967791 64967791 C A ZNF609 Missense_Mutation p.P913H 0.11 deleterious(0) possibly_damaging(0.58) TCGA-B8-5162-01 15 68582628 68582628 C A FEM1B Missense_Mutation p.P311H 0.03 deleterious(0.01) possibly_damaging(0.533) TCGA-B8-5162-01 16 31196376 31196376 G A FUS Missense_Mutation p.G214R 0.16 tolerated(0.42) unknown(0) TCGA-B8-5162-01 17 18675803 18675803 G A FBXW10 Silent p.T695T 0.19 TCGA-B8-5162-01 17 33935330 33935330 A T AP2B1 Missense_Mutation p.D150V 0.18 deleterious(0) benign(0.007) TCGA-B8-5162-01 17 42397438 42397438 C T SLC25A39 Missense_Mutation p.M337I 0.20 deleterious(0) probably_damaging(0.99) TCGA-B8-5162-01 17 54939989 54939989 C G DGKE Missense_Mutation p.S514C 0.10 deleterious(0) probably_damaging(0.999) TCGA-B8-5162-01 17 7246852 7246852 C T ACAP1 Missense_Mutation p.R167W 0.14 deleterious(0) possibly_damaging(0.715) TCGA-B8-5162-01 19 44680231 44680231 G A ZNF226 Silent p.Q272Q 0.13 TCGA-B8-5162-01 19 47823040 47823040 C G C5AR1 Missense_Mutation p.D2E 0.07 tolerated(0.17) benign(0.239) TCGA-B8-5162-01 1 103343539 103343540 - T COL11A1 3'UTR 0.15 TCGA-B8-5162-01 1 114680517 114680517 G C SYT6 Missense_Mutation p.S139C 0.20 deleterious(0.03) benign(0.246) TCGA-B8-5162-01 1 150445505 150445505 G T RPRD2 Missense_Mutation p.G1361C 0.19 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-B8-5162-01 1 183093844 183093844 T A LAMC1 Missense_Mutation p.L827Q 0.08 tolerated(0.63) benign(0.077) TCGA-B8-5162-01 1 19407942 19407942 A G UBR4 Missense_Mutation p.I5045T 0.04 benign(0.165) TCGA-B8-5162-01 1 206905036 206905036 C A MAPKAPK2 Missense_Mutation p.T315N 0.18 tolerated(0.05) benign(0.231) TCGA-B8-5162-01 1 62911028 62911028 G C USP1 Missense_Mutation p.G393R 0.16 tolerated(0.11) benign(0.005) TCGA-B8-5162-01 20 3102446 3102446 G T UBOX5 Nonsense_Mutation p.S280* 0.16 TCGA-B8-5162-01 20 34091340 34091340 G A CEP250 Missense_Mutation p.G1715S 0.15 benign(0.117) TCGA-B8-5162-01 21 33064127 33064132 TACCTT - SCAF4 Splice_Site p.X576_splice 0.16 TCGA-B8-5162-01 22 37407193 37407193 C T TST Missense_Mutation p.V257M 0.05 deleterious(0.03) possibly_damaging(0.514) TCGA-B8-5162-01 22 38119653 38119653 C G TRIOBP Missense_Mutation p.P364A 0.15 deleterious_low_confidence(0.01) benign(0.036) TCGA-B8-5162-01 22 39388598 39388598 G T APOBEC3B 3'UTR 0.21 TCGA-B8-5162-01 22 41613163 41613163 A G L3MBTL2 Missense_Mutation p.K186R 0.19 tolerated(0.4) benign(0.004) TCGA-B8-5162-01 2 112786169 112786169 G A MERTK Missense_Mutation p.A910T 0.16 tolerated(0.36) benign(0.008) TCGA-B8-5162-01 2 151326539 151326539 A C RND3 Missense_Mutation p.L233V 0.04 tolerated(0.28) benign(0.042) TCGA-B8-5162-01 2 169874569 169874569 C A ABCB11 Missense_Mutation p.D23Y 0.11 deleterious(0.04) benign(0.013) TCGA-B8-5162-01 2 183703339 183703339 T C FRZB Missense_Mutation p.I199V 0.18 deleterious(0) probably_damaging(0.994) TCGA-B8-5162-01 2 192141693 192141693 A G MYO1B Silent p.E24E 0.14 TCGA-B8-5162-01 2 242079401 242079401 G - PASK Frame_Shift_Del p.L167Sfs*6 0.26 TCGA-B8-5162-01 2 86265841 86265841 A C POLR1A Missense_Mutation p.L1339R 0.09 deleterious(0) probably_damaging(1) TCGA-B8-5162-01 3 10188254 10188255 AC T VHL Frame_Shift_Del p.T133Lfs*26 0.12 TCGA-B8-5162-01 3 98188528 98188528 G A OR5K1 Silent p.L36L 0.18 TCGA-B8-5162-01 4 114277003 114277003 A C ANK2 Missense_Mutation p.E2410A 0.14 probably_damaging(0.999) TCGA-B8-5162-01 4 115767136 115767136 G - NDST4 Frame_Shift_Del p.P653Lfs*64 0.21 TCGA-B8-5162-01 4 126411764 126411764 C A FAT4 Missense_Mutation p.T4596N 0.04 probably_damaging(0.994) TCGA-B8-5162-01 5 115335578 115335578 T G AQPEP Missense_Mutation p.F498L 0.15 deleterious(0) probably_damaging(0.973) TCGA-B8-5162-01 5 128448671 128448671 T A ISOC1 Missense_Mutation p.S292T 0.17 tolerated(0.52) benign(0.086) TCGA-B8-5162-01 5 140038746 140038746 T A IK Missense_Mutation p.D391E 0.36 tolerated(0.32) benign(0.007) TCGA-B8-5162-01 5 176395660 176395663 CCCT - UIMC1 Frame_Shift_Del p.R365Hfs*19 0.46 TCGA-B8-5162-01 5 37048673 37048673 T A NIPBL Nonsense_Mutation p.L2220* 0.16 TCGA-B8-5162-01 5 39376111 39376111 T C DAB2 Silent p.S745S 0.12 TCGA-B8-5162-01 5 43556087 43556087 G T PAIP1 Missense_Mutation p.L94M 0.18 tolerated(0.13) benign(0.359) TCGA-B8-5162-01 5 442720 442720 C T C5orf55 Missense_Mutation p.R73H 0.15 tolerated_low_confidence(0.22) possibly_damaging(0.715) TCGA-B8-5162-01 5 78347129 78347129 A G DMGDH Silent p.N242N 0.15 TCGA-B8-5162-01 5 98217770 98217770 C T CHD1 Missense_Mutation p.A926T 0.26 deleterious(0) probably_damaging(0.999) TCGA-B8-5162-01 6 130465915 130465915 T - SAMD3 Frame_Shift_Del p.N438Tfs*14 0.23 TCGA-B8-5162-01 6 144416697 144416697 T A SF3B5 5'UTR 0.17 TCGA-B8-5162-01 6 17608559 17608559 G T FAM8A1 Missense_Mutation p.G411W 0.15 deleterious(0) probably_damaging(0.998) TCGA-B8-5162-01 6 28297403 28297403 T C ZSCAN31 Missense_Mutation p.I20V 0.16 tolerated(0.53) benign(0) TCGA-B8-5162-01 6 6152120 6152120 T G F13A1 Missense_Mutation p.L657F 0.18 tolerated(0.29) probably_damaging(0.954) TCGA-B8-5162-01 6 83881749 83881749 C T PGM3 Silent p.L452L 0.13 TCGA-B8-5162-01 7 11675781 11675781 T C THSD7A Missense_Mutation p.K333R 0.03 tolerated(0.75) benign(0.002) TCGA-B8-5162-01 7 142658018 142658018 G A KEL Silent p.L133L 0.17 TCGA-B8-5162-01 7 150831516 150831516 G C AGAP3 Missense_Mutation p.E452D 0.15 deleterious(0.01) possibly_damaging(0.53) TCGA-B8-5162-01 7 45743056 45743056 G A ADCY1 Missense_Mutation p.A846T 0.24 deleterious(0) probably_damaging(0.999) TCGA-B8-5162-01 7 926213 926213 G C GET4 Missense_Mutation p.S81T 0.16 deleterious(0) probably_damaging(0.997) TCGA-B8-5162-01 7 92734736 92734736 A G SAMD9 Silent p.A225A 0.16 TCGA-B8-5162-01 7 92940514 92940527 AGATTACAGTCTAA - CCDC132 Frame_Shift_Del p.D596* 0.09 TCGA-B8-5162-01 8 101300465 101300465 C A RNF19A 5'UTR 0.19 TCGA-B8-5162-01 8 105361635 105361635 G A DCSTAMP Silent p.P285P 0.15 TCGA-B8-5162-01 8 16948087 16948087 T A MICU3 Silent p.T294T 0.03 TCGA-B8-5162-01 8 21824497 21824497 C A XPO7 Missense_Mutation p.L50I 0.12 tolerated(0.07) possibly_damaging(0.669) TCGA-B8-5162-01 8 22397011 22397011 G T PPP3CC Missense_Mutation p.A460S 0.14 tolerated(0.05) benign(0.006) TCGA-B8-5162-01 8 99440853 99440853 G A KCNS2 Missense_Mutation p.D216N 0.19 deleterious(0.04) benign(0.001) TCGA-B8-5162-01 9 27213540 27213540 A C TEK Missense_Mutation p.K979T 0.12 deleterious(0) probably_damaging(1) TCGA-B8-5162-01 9 33071759 33071759 C G SMU1 Missense_Mutation p.R123S 0.21 deleterious(0.04) benign(0.094) TCGA-B8-5162-01 9 72338295 72338295 G T PTAR1 Missense_Mutation p.F298L 0.15 tolerated(1) benign(0.009) TCGA-B8-5162-01 X 106957762 106957762 C G TSC22D3 Missense_Mutation p.G197A 0.34 tolerated_low_confidence(0.06) benign(0.036) TCGA-B8-5163-01 10 102732548 102732548 T C SEMA4G 5'Flank 0.15 TCGA-B8-5163-01 10 12142206 12142206 C A DHTKD1 Silent p.I567I 0.28 TCGA-B8-5163-01 10 61083812 61083812 G C FAM13C Missense_Mutation p.P127A 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.48) TCGA-B8-5163-01 11 134240284 134240284 C T GLB1L2 Silent p.Y402Y 0.16 TCGA-B8-5163-01 11 59622280 59622280 A G TCN1 Silent p.P322P 0.15 TCGA-B8-5163-01 11 64055547 64055547 T C GPR137 Missense_Mutation p.V273A 0.18 deleterious(0.02) benign(0.395) TCGA-B8-5163-01 11 67817973 67817978 GGCCAT - TCIRG1 In_Frame_Del p.A753_M754del 0.15 TCGA-B8-5163-01 11 68031203 68031203 G T C11orf24 Missense_Mutation p.F11L 0.14 tolerated(0.34) unknown(0) TCGA-B8-5163-01 11 92531125 92531125 C T FAT3 Missense_Mutation p.P1649L 0.20 probably_damaging(1) TCGA-B8-5163-01 12 100378000 100378000 C G ANKS1B Missense_Mutation p.E6Q 0.22 deleterious(0) benign(0.065) TCGA-B8-5163-01 12 108145591 108145591 T A PRDM4 Missense_Mutation p.N243Y 0.21 deleterious_low_confidence(0.01) benign(0.241) TCGA-B8-5163-01 12 108961053 108961053 C G ISCU Intron 0.10 TCGA-B8-5163-01 12 2566764 2566764 A T CACNA1C Nonsense_Mutation p.K217* 0.16 TCGA-B8-5163-01 12 51100435 51100436 - T DIP2B Frame_Shift_Ins p.Y842Lfs*2 0.10 TCGA-B8-5163-01 12 57493192 57493192 G T STAT6 Missense_Mutation p.F592L 0.25 deleterious(0) probably_damaging(0.998) TCGA-B8-5163-01 13 48619890 48619890 A G NUDT15 Silent p.K150K 0.19 TCGA-B8-5163-01 13 95114377 95114377 A C DCT Missense_Mutation p.N310K 0.18 deleterious(0.02) possibly_damaging(0.731) TCGA-B8-5163-01 14 105406791 105406793 AGA G AHNAK2 Frame_Shift_Del p.S4999Rfs*9 0.10 TCGA-B8-5163-01 14 36304068 36304068 G T BRMS1L Missense_Mutation p.C127F 0.14 deleterious(0.03) probably_damaging(0.992) TCGA-B8-5163-01 14 73685985 73685985 A G PSEN1 Silent p.Q464Q 0.18 TCGA-B8-5163-01 14 74086150 74086150 T C ACOT6 Silent p.T77T 0.12 TCGA-B8-5163-01 15 58925400 58925400 A G ADAM10 Missense_Mutation p.S391P 0.08 deleterious(0) probably_damaging(0.998) TCGA-B8-5163-01 15 59464119 59464119 T A MYO1E Missense_Mutation p.E819D 0.15 tolerated(0.35) benign(0.023) TCGA-B8-5163-01 16 67236114 67236114 C T ELMO3 Silent p.H449H 0.24 TCGA-B8-5163-01 16 67858656 67858658 GAG - TSNAXIP1 In_Frame_Del p.E165del 0.14 TCGA-B8-5163-01 17 18140216 18140216 A C LLGL1 Missense_Mutation p.Y525S 0.13 deleterious(0.05) possibly_damaging(0.772) TCGA-B8-5163-01 17 28887640 28887640 T C TBC1D29 Silent p.S28S 0.18 TCGA-B8-5163-01 17 29220506 29220506 T A ATAD5 Missense_Mutation p.N1545K 0.12 tolerated(1) benign(0) TCGA-B8-5163-01 17 37809762 37809762 C T STARD3 5'UTR 0.11 TCGA-B8-5163-01 17 37815807 37815807 G A STARD3 Splice_Site p.X265_splice 0.13 TCGA-B8-5163-01 17 38953169 38953169 G T KRT28 Missense_Mutation p.T326K 0.18 tolerated(0.07) benign(0.064) TCGA-B8-5163-01 17 39340703 39340703 G C KRTAP4-1 Missense_Mutation p.T135S 0.08 tolerated(0.53) unknown(0) TCGA-B8-5163-01 17 41370020 41370020 C T TMEM106A 3'UTR 0.40 TCGA-B8-5163-01 17 76475699 76475699 A T DNAH17 Missense_Mutation p.F2576I 0.10 possibly_damaging(0.762) TCGA-B8-5163-01 17 76803099 76803099 T A USP36 Missense_Mutation p.E676V 0.05 deleterious(0) probably_damaging(0.997) TCGA-B8-5163-01 17 8274814 8274814 T G KRBA2 Silent p.P13P 0.13 TCGA-B8-5163-01 18 77797401 77797401 G A RBFA Silent p.A91A 0.23 TCGA-B8-5163-01 19 11795989 11795989 C A ZNF833P RNA 0.05 TCGA-B8-5163-01 19 16279070 16279070 G T CIB3 Missense_Mutation p.A75D 0.08 deleterious(0) benign(0.362) TCGA-B8-5163-01 19 42219626 42219626 A T CEACAM5 Missense_Mutation p.N254I 0.12 deleterious(0.01) unknown(0) TCGA-B8-5163-01 19 46388204 46388204 C A IRF2BP1 Nonsense_Mutation p.E277* 0.16 TCGA-B8-5163-01 19 52468840 52468840 G T ZNF350 Missense_Mutation p.P289H 0.04 deleterious(0) probably_damaging(0.936) TCGA-B8-5163-01 19 58439174 58439174 A T ZNF418 Silent p.R125R 0.14 TCGA-B8-5163-01 19 9721752 9721761 TTGTCTTGCA - ZNF561 Frame_Shift_Del p.A193Pfs*45 0.12 TCGA-B8-5163-01 1 100336085 100336085 A T AGL Missense_Mutation p.K265I 0.15 deleterious(0.03) benign(0.197) TCGA-B8-5163-01 1 149920966 149920966 A G OTUD7B Silent p.D381D 0.11 TCGA-B8-5163-01 1 167974003 167974003 A G DCAF6 Silent p.A450A 0.17 TCGA-B8-5163-01 1 207300079 207300079 A C C4BPA Missense_Mutation p.D243A 0.16 tolerated(0.68) benign(0.137) TCGA-B8-5163-01 1 234582578 234582578 C T TARBP1 Missense_Mutation p.C702Y 0.18 deleterious(0.01) possibly_damaging(0.794) TCGA-B8-5163-01 1 38300878 38300878 G T MTF1 Missense_Mutation p.P288H 0.13 deleterious(0.01) probably_damaging(0.977) TCGA-B8-5163-01 1 86591208 86591208 G A COL24A1 Missense_Mutation p.P271S 0.09 tolerated(0.42) benign(0.003) TCGA-B8-5163-01 20 33337368 33337368 T A NCOA6 Missense_Mutation p.N877I 0.25 probably_damaging(0.997) TCGA-B8-5163-01 20 33337408 33337408 T A NCOA6 Missense_Mutation p.N864Y 0.24 possibly_damaging(0.486) TCGA-B8-5163-01 20 56136674 56136676 GAA - PCK1 In_Frame_Del p.K71del 0.38 TCGA-B8-5163-01 20 62174694 62174694 G T SRMS Missense_Mutation p.N206K 0.32 tolerated(0.3) benign(0.081) TCGA-B8-5163-01 22 26864514 26864514 T C HPS4 Intron 0.15 TCGA-B8-5163-01 22 36623378 36623378 A T APOL2 3'UTR 0.04 TCGA-B8-5163-01 2 103068649 103068649 C T IL18RAP 3'UTR 0.17 TCGA-B8-5163-01 2 120362275 120362275 C G PCDP1 Silent p.T273T 0.19 TCGA-B8-5163-01 2 210905056 210905056 T C KANSL1L Intron 0.25 TCGA-B8-5163-01 2 29420425 29420425 C G ALK Missense_Mutation p.K1352N 0.22 deleterious(0) probably_damaging(0.996) TCGA-B8-5163-01 2 32640925 32640925 A G BIRC6 Missense_Mutation p.I856V 0.18 benign(0.001) TCGA-B8-5163-01 2 3392356 3392356 G A TRAPPC12 Missense_Mutation p.R321Q 0.38 tolerated(0.08) benign(0.031) TCGA-B8-5163-01 2 48698316 48698316 G A PPP1R21 Missense_Mutation p.V330M 0.16 deleterious(0.01) probably_damaging(0.917) TCGA-B8-5163-01 2 84668507 84668507 G T SUCLG1 Missense_Mutation p.A132D 0.20 deleterious(0) probably_damaging(0.974) TCGA-B8-5163-01 3 10188218 10188218 G T VHL Missense_Mutation p.D121Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-B8-5163-01 3 128584261 128584261 A C RP11-723O4.9 5'Flank 0.22 TCGA-B8-5163-01 3 138413736 138413736 A G PIK3CB Missense_Mutation p.L595P 0.11 deleterious(0.01) probably_damaging(0.942) TCGA-B8-5163-01 3 28368357 28368357 T C AZI2 Silent p.L244L 0.22 TCGA-B8-5163-01 3 58899557 58899557 T A C3orf67 Missense_Mutation p.T18S 0.17 deleterious(0) probably_damaging(0.966) TCGA-B8-5163-01 4 188924839 188924839 A G ZFP42 Missense_Mutation p.K293R 0.18 deleterious(0.01) probably_damaging(0.985) TCGA-B8-5163-01 4 30725802 30725802 G C PCDH7 Missense_Mutation p.E920Q 0.11 tolerated(0.16) probably_damaging(0.967) TCGA-B8-5163-01 4 69519852 69519852 G T UGT2B15 Missense_Mutation p.H406N 0.13 deleterious(0.02) benign(0.043) TCGA-B8-5163-01 5 126754854 126754856 ATA TT MEGF10 Frame_Shift_Del p.I450Lfs*48 0.21 TCGA-B8-5163-01 5 127642858 127642858 G T FBN2 Missense_Mutation p.F1797L 0.14 tolerated(0.06) possibly_damaging(0.515) TCGA-B8-5163-01 5 14673798 14673798 A - FAM105B Frame_Shift_Del p.E67Dfs*14 0.25 TCGA-B8-5163-01 5 156670646 156670646 C A ITK Silent p.I358I 0.23 TCGA-B8-5163-01 5 42719044 42719044 A C GHR Missense_Mutation p.S479R 0.23 tolerated(0.12) possibly_damaging(0.878) TCGA-B8-5163-01 5 98204294 98204294 A C CHD1 Missense_Mutation p.S1385A 0.20 tolerated(0.44) benign(0) TCGA-B8-5163-01 6 28268767 28268767 A G PGBD1 Missense_Mutation p.K379R 0.28 tolerated(0.27) benign(0.012) TCGA-B8-5163-01 6 28294515 28294515 T G ZSCAN31 Silent p.R217R 0.36 TCGA-B8-5163-01 6 43153719 43153719 G A CUL9 Silent p.L259L 0.12 TCGA-B8-5163-01 7 148544374 148544374 T A EZH2 Missense_Mutation p.K6M 0.12 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-B8-5163-01 7 150775147 150775147 T - FASTK Frame_Shift_Del p.L287* 0.18 TCGA-B8-5163-01 8 145697356 145697356 C G KIFC2 Missense_Mutation p.S471C 0.21 deleterious(0) probably_damaging(0.998) TCGA-B8-5163-01 8 74742665 74742665 G T UBE2W Missense_Mutation p.P60T 0.15 tolerated(0.11) benign(0.227) TCGA-B8-5163-01 9 39100140 39100140 C A CNTNAP3 Silent p.T921T 0.06 TCGA-B8-5163-01 X 109764826 109764826 C G TDGF1P3 RNA 0.20 TCGA-B8-5163-01 X 2688594 2688594 A - XG Frame_Shift_Del p.R23Efs*133 0.22 TCGA-B8-5163-01 X 36083809 36083809 T C CHDC2 5'UTR 0.05 TCGA-B8-5163-01 X 37028075 37028075 T A FAM47C Missense_Mutation p.V531E 0.03 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-B8-5163-01 X 66764972 66764972 T C AR 5'UTR 0.14 TCGA-B8-5163-01 X 69595153 69595153 G C KIF4A Missense_Mutation p.K626N 0.16 deleterious(0) possibly_damaging(0.883) TCGA-B8-5164-01 10 127426983 127426983 A T EDRF1 Silent p.L650L 0.15 TCGA-B8-5164-01 10 129536797 129536797 C T FOXI2 Silent p.Y175Y 0.18 TCGA-B8-5164-01 10 46282517 46282517 C A FAM21C Missense_Mutation p.P949H 0.12 deleterious(0) probably_damaging(1) TCGA-B8-5164-01 10 46961906 46961906 G T SYT15 3'Flank 0.19 TCGA-B8-5164-01 10 6520965 6520965 A C PRKCQ Missense_Mutation p.F448V 0.17 deleterious(0) probably_damaging(0.998) TCGA-B8-5164-01 10 96350261 96350261 A C HELLS Missense_Mutation p.E527A 0.21 tolerated(0.35) benign(0.013) TCGA-B8-5164-01 11 46880421 46880421 G A LRP4 3'UTR 0.30 TCGA-B8-5164-01 11 46880422 46880422 G A LRP4 3'UTR 0.30 TCGA-B8-5164-01 11 869878 869878 A T CHID1 Missense_Mutation p.Y413N 0.14 deleterious(0) probably_damaging(0.999) TCGA-B8-5164-01 12 124811991 124811991 C A NCOR2 Missense_Mutation p.A2383S 0.04 possibly_damaging(0.688) TCGA-B8-5164-01 12 30867961 30867961 G C CAPRIN2 Missense_Mutation p.S811C 0.05 deleterious(0.01) possibly_damaging(0.896) TCGA-B8-5164-01 12 32490515 32490515 T G BICD1 Missense_Mutation p.L779V 0.04 deleterious(0) probably_damaging(0.999) TCGA-B8-5164-01 12 49259538 49259538 G C RND1 Missense_Mutation p.R5G 0.13 deleterious(0.01) probably_damaging(0.982) TCGA-B8-5164-01 12 50571732 50571732 C T LIMA1 Nonsense_Mutation p.W466* 0.20 TCGA-B8-5164-01 12 58004440 58004440 G T ARHGEF25 Nonsense_Mutation p.E63* 0.11 TCGA-B8-5164-01 12 6204658 6204658 A T VWF Missense_Mutation p.S209T 0.20 tolerated(1) benign(0.01) TCGA-B8-5164-01 13 29238707 29238707 G T POMP Splice_Site p.X54_splice 0.12 TCGA-B8-5164-01 13 96238362 96238362 T C DZIP1 Silent p.K749K 0.12 TCGA-B8-5164-01 14 65417538 65417538 A T RAB15 Intron 0.29 TCGA-B8-5164-01 15 34647722 34647722 G T NUTM1 Nonsense_Mutation p.E477* 0.16 TCGA-B8-5164-01 15 42185135 42185135 A - SPTBN5 Frame_Shift_Del p.F114Sfs*84 0.12 TCGA-B8-5164-01 15 50596276 50596297 CTGTGGTGGAATAATGACCATA - GABPB1 Frame_Shift_Del p.Y48Rfs*8 0.13 TCGA-B8-5164-01 15 64218210 64218210 C A DAPK2 Nonsense_Mutation p.E248* 0.19 TCGA-B8-5164-01 15 75042368 75042368 G A CYP1A2 Missense_Mutation p.A97T 0.26 deleterious(0) probably_damaging(0.976) TCGA-B8-5164-01 15 93545455 93545457 GAG A CHD2 Frame_Shift_Del p.E1396Kfs*12 0.17 TCGA-B8-5164-01 16 15711240 15711240 G C KIAA0430 Missense_Mutation p.S958C 0.19 deleterious(0) probably_damaging(0.999) TCGA-B8-5164-01 16 30990969 30990969 C A SETD1A Missense_Mutation p.R1288S 0.15 unknown(0) TCGA-B8-5164-01 16 31435255 31435255 T G ITGAD Missense_Mutation p.N1045K 0.12 tolerated(0.08) benign(0.044) TCGA-B8-5164-01 16 4780097 4780097 C A ANKS3 Missense_Mutation p.L18F 0.19 deleterious(0) probably_damaging(0.999) TCGA-B8-5164-01 16 58314590 58314590 G A PRSS54 Silent p.N242N 0.18 TCGA-B8-5164-01 17 19186485 19186485 C T EPN2 Missense_Mutation p.S18L 0.21 deleterious(0) probably_damaging(0.994) TCGA-B8-5164-01 17 3851044 3851044 G T ATP2A3 Silent p.R246R 0.21 TCGA-B8-5164-01 17 73502889 73502889 G A CASKIN2 Silent p.G159G 0.06 TCGA-B8-5164-01 17 7661862 7661862 A T DNAH2 Missense_Mutation p.I701F 0.25 probably_damaging(0.987) TCGA-B8-5164-01 17 78013722 78013722 G C CCDC40 Missense_Mutation p.V69L 0.21 tolerated_low_confidence(0.33) benign(0.016) TCGA-B8-5164-01 17 79875994 79875994 C T SIRT7 Missense_Mutation p.G5D 0.15 tolerated(0.36) benign(0.084) TCGA-B8-5164-01 18 33694147 33694147 C T SLC39A6 Missense_Mutation p.E586K 0.19 deleterious(0.03) probably_damaging(0.98) TCGA-B8-5164-01 18 6870684 6870684 A C ARHGAP28 Missense_Mutation p.N144H 0.21 tolerated(0.21) benign(0.008) TCGA-B8-5164-01 19 15784434 15784434 C T CYP4F12 Missense_Mutation p.A32V 0.19 tolerated(0.13) benign(0.033) TCGA-B8-5164-01 19 36046455 36046459 TCAGC - ATP4A Frame_Shift_Del p.L681Gfs*50 0.15 TCGA-B8-5164-01 19 40873738 40873738 G A PLD3 Nonsense_Mutation p.W127* 0.40 TCGA-B8-5164-01 19 45562555 45562555 C A CLASRP Missense_Mutation p.Q215K 0.14 tolerated(0.39) benign(0.018) TCGA-B8-5164-01 19 51453328 51453328 T G KLK5 Missense_Mutation p.N40H 0.21 deleterious(0.05) possibly_damaging(0.902) TCGA-B8-5164-01 19 5244419 5244419 C A PTPRS Missense_Mutation p.G355C 0.12 deleterious(0) probably_damaging(1) TCGA-B8-5164-01 19 54822582 54822582 C - LILRA5 Intron 0.28 TCGA-B8-5164-01 19 56104632 56104632 C T FIZ1 Silent p.V225V 0.25 TCGA-B8-5164-01 19 56370366 56370366 A G NLRP4 Missense_Mutation p.K536R 0.18 tolerated(0.14) benign(0.132) TCGA-B8-5164-01 1 109795801 109795801 G A CELSR2 Missense_Mutation p.V1034I 0.22 tolerated(0.16) benign(0.078) TCGA-B8-5164-01 1 120437279 120437279 T G ADAM30 Missense_Mutation p.N561H 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-B8-5164-01 1 206320203 206320203 A - CTSE Frame_Shift_Del p.T116Rfs*43 0.20 TCGA-B8-5164-01 1 36932909 36932909 C T CSF3R Silent p.R654R 0.16 TCGA-B8-5164-01 1 40703457 40703458 AT - RLF Frame_Shift_Del p.D1028Afs*6 0.22 TCGA-B8-5164-01 1 52703253 52703253 G C ZFYVE9 Missense_Mutation p.S55T 0.19 deleterious_low_confidence(0.01) benign(0.097) TCGA-B8-5164-01 1 92470112 92470112 G T BRDT Nonsense_Mutation p.E844* 0.19 TCGA-B8-5164-01 20 23432483 23432484 - T CST11 Frame_Shift_Ins p.N101Kfs*26 0.26 TCGA-B8-5164-01 20 37630475 37630475 T A DHX35 Missense_Mutation p.Y249N 0.20 deleterious(0) benign(0.369) TCGA-B8-5164-01 20 37630476 37630476 A T DHX35 Missense_Mutation p.Y249F 0.21 tolerated(0.11) benign(0.02) TCGA-B8-5164-01 20 47887899 47887899 T G ZNFX1 Missense_Mutation p.E150D 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-B8-5164-01 20 60902342 60902342 C G LAMA5 Missense_Mutation p.E1687Q 0.25 benign(0.043) TCGA-B8-5164-01 21 41455857 41455857 G T DSCAM Missense_Mutation p.D1403E 0.07 deleterious(0) probably_damaging(0.983) TCGA-B8-5164-01 21 43711704 43711704 A C ABCG1 Missense_Mutation p.M543L 0.22 tolerated(1) benign(0.001) TCGA-B8-5164-01 22 20921042 20921042 T C MED15 Silent p.L327L 0.19 TCGA-B8-5164-01 22 37640153 37640153 C T RAC2 Splice_Site p.X12_splice 0.10 TCGA-B8-5164-01 2 217001838 217001838 A C XRCC5 Missense_Mutation p.I381L 0.17 deleterious(0.01) benign(0.415) TCGA-B8-5164-01 2 240960806 240960806 C A NDUFA10 Missense_Mutation p.G90W 0.18 deleterious(0) probably_damaging(0.913) TCGA-B8-5164-01 2 26698885 26698885 C A OTOF Missense_Mutation p.R963L 0.12 deleterious(0) probably_damaging(1) TCGA-B8-5164-01 2 27315220 27315220 A G KHK Missense_Mutation p.Q38R 0.07 deleterious(0.05) probably_damaging(0.915) TCGA-B8-5164-01 2 27598997 27598997 C G SNX17 Missense_Mutation p.Q377E 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-B8-5164-01 2 38893235 38893235 G C GALM 5'UTR 0.38 TCGA-B8-5164-01 2 48809434 48809434 G A STON1-GTF2A1L Silent p.Q554Q 0.17 TCGA-B8-5164-01 2 64112775 64112807 TACTCAGGGGAAAATACAGAAGCTTGGTACCCT ACCCA UGP2 Frame_Shift_Del p.Y210Tfs*22 0.10 TCGA-B8-5164-01 2 68384457 68384457 G C WDR92 Missense_Mutation p.A40G 0.26 deleterious(0.05) benign(0.118) TCGA-B8-5164-01 2 9645471 9645471 T C ADAM17 Silent p.Q456Q 0.04 TCGA-B8-5164-01 3 123451941 123451941 T G MYLK Missense_Mutation p.I440L 0.24 tolerated(0.76) benign(0.069) TCGA-B8-5164-01 3 142098968 142098968 T A XRN1 Missense_Mutation p.I891F 0.20 tolerated(0.08) possibly_damaging(0.65) TCGA-B8-5164-01 3 14964675 14964675 G C FGD5 Silent p.L1310L 0.15 TCGA-B8-5164-01 3 53853056 53853056 C A CHDH Silent p.G425G 0.17 TCGA-B8-5164-01 3 57994561 57994561 G C FLNB Missense_Mutation p.E90D 0.25 deleterious(0) benign(0.092) TCGA-B8-5164-01 4 31144197 31144197 C T PCDH7 Missense_Mutation p.P1165L 0.19 deleterious(0) possibly_damaging(0.832) TCGA-B8-5164-01 4 9784959 9784959 C A DRD5 Missense_Mutation p.R436S 0.17 tolerated(0.12) benign(0.177) TCGA-B8-5164-01 5 141243175 141243175 C G PCDH1 Missense_Mutation p.K907N 0.23 tolerated(0.12) benign(0.061) TCGA-B8-5164-01 5 148207202 148207202 A - ADRB2 Frame_Shift_Del p.A271Pfs*5 0.20 TCGA-B8-5164-01 5 148685933 148685946 TGCAACCAGGGTGA CGCCACCACGGGGG AFAP1L1 Missense_Mutation p.RVN170TGD 0.10 TCGA-B8-5164-01 5 173316872 173316874 AAT - CPEB4 In_Frame_Del p.N48del 0.32 TCGA-B8-5164-01 5 31538433 31538433 C G C5orf22 Missense_Mutation p.N148K 0.15 deleterious(0) probably_damaging(0.936) TCGA-B8-5164-01 5 61643911 61643911 C A KIF2A Missense_Mutation p.L66I 0.18 tolerated(0.06) benign(0.248) TCGA-B8-5164-01 5 73193844 73193844 G A ARHGEF28 Missense_Mutation p.C1300Y 0.29 tolerated(0.14) benign(0.007) TCGA-B8-5164-01 6 139583897 139583899 TGA - TXLNB In_Frame_Del p.Q234del 0.23 TCGA-B8-5164-01 6 157256695 157256696 - C ARID1B Frame_Shift_Ins p.S676Ifs*11 0.21 TCGA-B8-5164-01 6 20781422 20781422 G C CDKAL1 Silent p.R188R 0.16 TCGA-B8-5164-01 7 103033397 103033397 T G SLC26A5 Missense_Mutation p.N363T 0.18 deleterious(0) benign(0.174) TCGA-B8-5164-01 7 128413772 128413772 G T OPN1SW Silent p.T286T 0.12 TCGA-B8-5164-01 7 21904264 21904264 A C DNAH11 Missense_Mutation p.S3836R 0.15 possibly_damaging(0.894) TCGA-B8-5164-01 7 72413614 72413614 C G POM121 Missense_Mutation p.P763A 0.10 deleterious(0.05) possibly_damaging(0.904) TCGA-B8-5164-01 7 87175282 87175282 G C ABCB1 Missense_Mutation p.A595G 0.20 deleterious(0) possibly_damaging(0.905) TCGA-B8-5164-01 8 144940563 144940563 C T EPPK1 Missense_Mutation p.V2287M 0.14 probably_damaging(0.999) TCGA-B8-5164-01 8 53554925 53554925 G A RB1CC1 Silent p.S1441S 0.25 TCGA-B8-5164-01 8 59514096 59514096 T C NSMAF Splice_Site p.X407_splice 0.20 TCGA-B8-5164-01 9 104192184 104192184 G A ALDOB Silent p.F59F 0.19 TCGA-B8-5164-01 9 130167742 130167742 A G SLC2A8 Silent p.S398S 0.17 TCGA-B8-5164-01 9 27949564 27949564 C T LINGO2 Missense_Mutation p.R369Q 0.26 deleterious(0) benign(0.312) TCGA-B8-5164-01 9 32480246 32480246 A T DDX58 Missense_Mutation p.I582N 0.19 tolerated(0.13) benign(0.012) TCGA-B8-5164-01 9 418160 418160 G - DOCK8 Frame_Shift_Del p.N1266Ifs*5 0.26 TCGA-B8-5164-01 X 47518230 47518230 G A UXT Nonsense_Mutation p.R45* 0.16 TCGA-B8-5164-01 X 68382325 68382325 C G PJA1 Missense_Mutation p.E253Q 0.37 deleterious(0.03) probably_damaging(1) TCGA-B8-5165-01 11 108040715 108040715 C G NPAT Silent p.G947G 0.13 TCGA-B8-5165-01 11 118897701 118897701 T C SLC37A4 Missense_Mutation p.T244A 0.21 tolerated(0.21) benign(0.018) TCGA-B8-5165-01 12 46623010 46623010 T C SLC38A1 Silent p.L80L 0.24 TCGA-B8-5165-01 12 52774232 52774232 C G KRT84 Missense_Mutation p.E447Q 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-B8-5165-01 12 56495609 56495609 C T ERBB3 Nonsense_Mutation p.R1267* 0.16 TCGA-B8-5165-01 17 30348328 30348328 C T LRRC37B Missense_Mutation p.L55F 0.15 tolerated(0.05) benign(0.375) TCGA-B8-5165-01 17 35872566 35872566 T C DUSP14 Silent p.P64P 0.27 TCGA-B8-5165-01 1 202287589 202287589 T G LGR6 Missense_Mutation p.Y720D 0.16 tolerated(0.08) possibly_damaging(0.836) TCGA-B8-5165-01 1 231488560 231488560 G A SPRTN Missense_Mutation p.G308D 0.06 tolerated(0.13) benign(0.016) TCGA-B8-5165-01 1 40701710 40701710 C T RLF Missense_Mutation p.P446S 0.05 deleterious(0.05) benign(0.379) TCGA-B8-5165-01 20 62597744 62597745 - G ZNF512B Frame_Shift_Ins p.K262Qfs*82 0.19 TCGA-B8-5165-01 22 24313682 24313682 G C DDT 3'UTR 0.25 TCGA-B8-5165-01 3 10188321 10188321 G T VHL Splice_Site p.X155_splice 0.15 TCGA-B8-5165-01 3 155199797 155199797 G A PLCH1 Missense_Mutation p.P1348S 0.06 deleterious_low_confidence(0.02) benign(0.014) TCGA-B8-5165-01 3 49314185 49314185 A G C3orf62 Missense_Mutation p.C41R 0.24 deleterious(0) possibly_damaging(0.804) TCGA-B8-5165-01 4 153895933 153895933 G A FHDC1 Missense_Mutation p.R497Q 0.06 deleterious(0.02) probably_damaging(1) TCGA-B8-5165-01 5 133948437 133948437 T A SAR1B Missense_Mutation p.E63V 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-B8-5165-01 5 140751808 140751808 T A PCDHGB3 Missense_Mutation p.L616Q 0.27 deleterious(0) probably_damaging(0.995) TCGA-B8-5165-01 5 156641308 156641308 C T ITK Silent p.A144A 0.07 TCGA-B8-5165-01 5 176825284 176825284 C A SLC34A1 Silent p.L639L 0.27 TCGA-B8-5165-01 5 19483487 19483487 G C CDH18 Missense_Mutation p.A602G 0.17 tolerated(0.1) benign(0.001) TCGA-B8-5165-01 6 3113551 3113551 T A RIPK1 Nonsense_Mutation p.L665* 0.24 TCGA-B8-5165-01 8 109094887 109094887 G C RSPO2 5'UTR 0.11 TCGA-B8-5165-01 8 110131518 110131518 A C TRHR Missense_Mutation p.K344T 0.15 tolerated(0.17) benign(0.108) TCGA-B8-5165-01 9 131678652 131678652 C T LRRC8A 3'UTR 0.25 TCGA-B8-5165-01 X 135080323 135080323 T C SLC9A6 Silent p.Y194Y 0.34 TCGA-B8-5165-01 X 147743723 147743723 T A AFF2 Missense_Mutation p.W159R 0.04 deleterious(0) probably_damaging(0.996) TCGA-B8-5545-01 10 16919092 16919092 A G CUBN Silent p.R2970R 0.12 TCGA-B8-5545-01 10 61835269 61835269 C T ANK3 Silent p.Q1790Q 0.18 TCGA-B8-5545-01 11 27390552 27390552 G A LGR4 Missense_Mutation p.S573F 0.24 deleterious(0.03) benign(0.015) TCGA-B8-5545-01 11 4510414 4510414 A G OR52K1 Missense_Mutation p.N95S 0.07 tolerated(1) benign(0.001) TCGA-B8-5545-01 13 86370304 86370304 G A SLITRK6 Silent p.L114L 0.23 TCGA-B8-5545-01 14 75230960 75230960 T G YLPM1 Missense_Mutation p.N256K 0.23 unknown(0) TCGA-B8-5545-01 15 25331751 25331751 G T SNORD116-19 RNA 0.18 TCGA-B8-5545-01 15 43712740 43712741 AG - TP53BP1 Frame_Shift_Del p.L1482Rfs*8 0.22 TCGA-B8-5545-01 16 58325018 58325018 G A PRSS54 Silent p.S36S 0.05 TCGA-B8-5545-01 17 17929649 17929649 C T ATPAF2 Missense_Mutation p.D136N 0.19 tolerated(0.09) benign(0.285) TCGA-B8-5545-01 18 42531246 42531246 A G SETBP1 Silent p.K647K 0.19 TCGA-B8-5545-01 18 74728852 74728852 A G MBP Missense_Mutation p.I171T 0.20 deleterious_low_confidence(0) possibly_damaging(0.547) TCGA-B8-5545-01 1 100550761 100550761 C G SASS6 3'UTR 0.37 TCGA-B8-5545-01 20 61303317 61303317 A T SLCO4A1 3'UTR 0.19 TCGA-B8-5545-01 22 22724315 22724315 G C IGLV7-46 Missense_Mutation p.D71H 0.09 TCGA-B8-5545-01 2 39519948 39519948 C A MAP4K3 Nonsense_Mutation p.E413* 0.14 TCGA-B8-5545-01 3 12422837 12422837 G A PPARG Silent p.E109E 0.16 TCGA-B8-5545-01 3 9034602 9034602 C T SRGAP3 Missense_Mutation p.G849E 0.19 tolerated_low_confidence(0.97) benign(0.422) TCGA-B8-5545-01 4 42037333 42037333 T G SLC30A9 Missense_Mutation p.F218V 0.04 tolerated(0.49) benign(0.082) TCGA-B8-5545-01 4 47850290 47850290 C T NFXL1 Missense_Mutation p.E876K 0.18 deleterious(0.03) benign(0.407) TCGA-B8-5545-01 4 6349697 6349697 C T PPP2R2C Silent p.T222T 0.19 TCGA-B8-5545-01 4 79832708 79832708 A G BMP2K Missense_Mutation p.S1003G 0.19 tolerated_low_confidence(0.37) unknown(0) TCGA-B8-5545-01 5 24492951 24492951 T G CDH10 Silent p.P533P 0.03 TCGA-B8-5545-01 6 90577024 90577035 AAGACTCCAGAG - CASP8AP2 RNA 0.21 TCGA-B8-5545-01 7 117513495 117513495 C T CTTNBP2 5'UTR 0.24 TCGA-B8-5545-01 7 42116424 42116424 G A GLI3 Missense_Mutation p.P134S 0.20 deleterious(0) possibly_damaging(0.886) TCGA-B8-5545-01 8 25343306 25343306 C T CDCA2 Missense_Mutation p.A466V 0.05 deleterious(0.02) probably_damaging(0.921) TCGA-B8-5545-01 8 74858967 74858967 G T TCEB1 Nonsense_Mutation p.Y79* 0.32 TCGA-B8-5545-01 8 74858968 74858968 T A TCEB1 Missense_Mutation p.Y79F 0.32 deleterious(0.04) benign(0.211) TCGA-B8-5545-01 9 71627879 71627879 C T PRKACG 3'UTR 0.19 TCGA-B8-5545-01 9 95012199 95012199 T A IARS Missense_Mutation p.I853F 0.17 tolerated(0.17) probably_damaging(0.988) TCGA-B8-5545-01 9 95012201 95012201 A G IARS Missense_Mutation p.V852A 0.17 deleterious(0.03) possibly_damaging(0.597) TCGA-B8-5545-01 X 54475272 54475272 C T FGD1 Silent p.Q801Q 0.09 TCGA-B8-5546-01 11 18729752 18729752 A G IGSF22 Splice_Site p.X1029_splice 0.44 TCGA-B8-5546-01 12 133374959 133374959 C G GOLGA3 Missense_Mutation p.K635N 0.09 deleterious(0) probably_damaging(1) TCGA-B8-5546-01 14 100123343 100123343 C G HHIPL1 Missense_Mutation p.I303M 0.06 deleterious(0) probably_damaging(0.983) TCGA-B8-5546-01 17 37762561 37762561 C T NEUROD2 Missense_Mutation p.G98S 0.43 tolerated(0.07) benign(0.009) TCGA-B8-5546-01 1 1663713 1663713 C T SLC35E2 3'UTR 0.18 TCGA-B8-5546-01 20 33128464 33128464 T A DYNLRB1 3'UTR 0.04 TCGA-B8-5546-01 2 105915065 105915065 C T TGFBRAP1 Silent p.A262A 0.43 TCGA-B8-5546-01 2 120012306 120012306 G A STEAP3 Missense_Mutation p.R366Q 0.35 tolerated(0.11) probably_damaging(0.999) TCGA-B8-5546-01 2 242009494 242009494 T C SNED1 Missense_Mutation p.L1156P 0.14 deleterious(0) probably_damaging(1) TCGA-B8-5546-01 3 112647851 112647851 G A CD200R1 Missense_Mutation p.A194V 0.17 deleterious(0) benign(0.355) TCGA-B8-5546-01 3 142561763 142561763 C T PCOLCE2 Intron 0.45 TCGA-B8-5546-01 3 49723329 49723329 C T MST1 Missense_Mutation p.C405Y 0.20 deleterious(0) probably_damaging(1) TCGA-B8-5546-01 5 140391226 140391226 A C PCDHAC1 3'UTR 0.35 TCGA-B8-5546-01 5 96103643 96103643 T C CAST Silent p.A695A 0.39 TCGA-B8-5546-01 5 96103644 96103644 C T CAST Missense_Mutation p.L696F 0.39 deleterious(0.02) probably_damaging(0.989) TCGA-B8-5546-01 6 27833125 27833125 T C HIST1H2AL 5'UTR 0.09 TCGA-B8-5546-01 6 38942198 38942198 T G DNAH8 Missense_Mutation p.L4026V 0.41 probably_damaging(1) TCGA-B8-5546-01 7 82582250 82582250 T G PCLO Missense_Mutation p.E2673D 0.27 unknown(0) TCGA-B8-5546-01 8 121282409 121282409 C A COL14A1 Missense_Mutation p.T1070N 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-B8-5549-01 10 61833421 61833421 A G ANK3 Silent p.Y2406Y 0.20 TCGA-B8-5549-01 11 993328 993328 C T AP2A2 Silent p.G499G 0.10 TCGA-B8-5549-01 12 133324430 133324432 GGT - ANKLE2 In_Frame_Del p.T406del 0.18 TCGA-B8-5549-01 12 41302164 41302164 T C CNTN1 5'UTR 0.39 TCGA-B8-5549-01 12 6573497 6573497 G A VAMP1 3'UTR 0.04 TCGA-B8-5549-01 12 96360253 96360253 A G AMDHD1 Missense_Mutation p.K387R 0.36 tolerated(0.13) possibly_damaging(0.866) TCGA-B8-5549-01 13 23915483 23915483 T G SACS Silent p.V844V 0.16 TCGA-B8-5549-01 13 27333242 27333242 C T GPR12 Silent p.S241S 0.18 TCGA-B8-5549-01 14 24518003 24518003 A G LRRC16B 5'Flank 0.27 TCGA-B8-5549-01 14 39784922 39784930 GGTAAGTTT - CTAGE5 Splice_Site p.X469_splice 0.11 TCGA-B8-5549-01 14 69989009 69989009 C T PLEKHD1 Missense_Mutation p.R189C 0.15 deleterious(0) possibly_damaging(0.877) TCGA-B8-5549-01 14 89093186 89093186 C T EML5 Missense_Mutation p.G1579D 0.30 deleterious(0) probably_damaging(0.999) TCGA-B8-5549-01 15 34546785 34546785 A G SLC12A6 Silent p.Y294Y 0.19 TCGA-B8-5549-01 15 42529710 42529710 C - TMEM87A Frame_Shift_Del p.G263Vfs*32 0.14 TCGA-B8-5549-01 15 60641324 60641324 T G ANXA2 Silent p.R322R 0.42 TCGA-B8-5549-01 16 25162930 25162930 C G LCMT1 Missense_Mutation p.Q154E 0.31 tolerated(0.87) benign(0.004) TCGA-B8-5549-01 16 31501699 31501699 G C SLC5A2 Missense_Mutation p.G621A 0.43 tolerated(0.16) benign(0.031) TCGA-B8-5549-01 16 5112427 5112427 T C C16orf89 Silent p.R119R 0.08 TCGA-B8-5549-01 16 68012431 68012438 GTAGGAGG - DPEP3 Frame_Shift_Del p.A194Vfs*2 0.24 TCGA-B8-5549-01 17 41122331 41122331 G T PTGES3L Missense_Mutation p.P141H 0.26 deleterious(0.02) probably_damaging(0.927) TCGA-B8-5549-01 17 4837666 4837666 A C GP1BA Silent p.T589T 0.26 TCGA-B8-5549-01 17 61607502 61607502 G T KCNH6 Missense_Mutation p.G120W 0.33 deleterious(0) probably_damaging(0.996) TCGA-B8-5549-01 17 7464289 7464289 T G TNFSF12-TNFSF13 3'UTR 0.31 TCGA-B8-5549-01 19 53959771 53959771 C T ZNF761 RNA 0.14 TCGA-B8-5549-01 1 155385552 155385552 G A ASH1L Silent p.D1997D 0.41 TCGA-B8-5549-01 1 158670428 158670428 A C OR6K2 Missense_Mutation p.N5K 0.15 deleterious(0.01) benign(0.275) TCGA-B8-5549-01 1 177901916 177901916 T C SEC16B Missense_Mutation p.H950R 0.21 tolerated(0.49) benign(0) TCGA-B8-5549-01 1 220835299 220835299 G T MARK1 Missense_Mutation p.A727S 0.23 tolerated(0.21) benign(0.024) TCGA-B8-5549-01 1 27106271 27106271 G A ARID1A Missense_Mutation p.S1961N 0.24 benign(0.164) TCGA-B8-5549-01 1 39801310 39801310 C A MACF1 Intron 0.15 TCGA-B8-5549-01 1 43055004 43055004 T C CCDC30 Silent p.Y411Y 0.42 TCGA-B8-5549-01 1 43111913 43111913 C A CCDC30 Missense_Mutation p.S666R 0.45 tolerated(0.54) benign(0.037) TCGA-B8-5549-01 1 62673128 62673128 T G L1TD1 Missense_Mutation p.F276L 0.20 tolerated(1) unknown(0) TCGA-B8-5549-01 1 86907161 86907161 A G CLCA2 Missense_Mutation p.S475G 0.03 tolerated(1) benign(0.022) TCGA-B8-5549-01 20 17605265 17605265 C G RRBP1 Missense_Mutation p.E602Q 0.25 tolerated(0.07) possibly_damaging(0.742) TCGA-B8-5549-01 22 40231918 40231918 A T ENTHD1 Missense_Mutation p.V213D 0.33 deleterious(0.01) benign(0.032) TCGA-B8-5549-01 22 44892947 44892947 T C LDOC1L Missense_Mutation p.N164D 0.15 tolerated(0.35) benign(0.001) TCGA-B8-5549-01 2 103067330 103067330 C T IL18RAP Silent p.F411F 0.34 TCGA-B8-5549-01 2 113333412 113333412 G T POLR1B 3'UTR 0.50 TCGA-B8-5549-01 2 153192177 153192177 T C FMNL2 Silent p.P20P 0.44 TCGA-B8-5549-01 2 166909391 166909391 C A SCN1A Missense_Mutation p.R222L 0.28 deleterious(0) probably_damaging(0.999) TCGA-B8-5549-01 2 38903134 38903134 G T GALM Missense_Mutation p.D91Y 0.29 deleterious(0) probably_damaging(0.912) TCGA-B8-5549-01 2 46228548 46228548 A - PRKCE Frame_Shift_Del p.M278* 0.28 TCGA-B8-5549-01 2 61522139 61522139 G A USP34 Missense_Mutation p.S1469L 0.37 tolerated(0.06) possibly_damaging(0.644) TCGA-B8-5549-01 3 10191491 10191491 T C VHL Missense_Mutation p.C162R 0.49 deleterious(0) probably_damaging(0.999) TCGA-B8-5549-01 3 121659238 121659238 C G SLC15A2 Missense_Mutation p.S639C 0.16 deleterious(0.01) benign(0.353) TCGA-B8-5549-01 3 168802651 168802651 C T MECOM 3'UTR 0.08 TCGA-B8-5549-01 3 185195185 185195185 G A MAP3K13 Splice_Site p.X834_splice 0.35 TCGA-B8-5549-01 3 44541259 44541259 C T ZNF852 Missense_Mutation p.S337N 0.48 deleterious(0.05) possibly_damaging(0.816) TCGA-B8-5549-01 4 141600356 141600356 C T TBC1D9 Silent p.A197A 0.48 TCGA-B8-5549-01 4 160189294 160189294 T C RAPGEF2 5'UTR 0.21 TCGA-B8-5549-01 4 7663263 7663263 C T SORCS2 Silent p.V308V 0.20 TCGA-B8-5549-01 5 137520633 137520633 C T KIF20A Silent p.C607C 0.37 TCGA-B8-5549-01 5 150276178 150276179 - A ZNF300 Frame_Shift_Ins p.S224Ffs*6 0.27 TCGA-B8-5549-01 5 19838883 19838883 A T CDH18 Silent p.P71P 0.35 TCGA-B8-5549-01 5 36985915 36985915 G - NIPBL Frame_Shift_Del p.E879Kfs*50 0.28 TCGA-B8-5549-01 6 132859640 132859640 T A TAAR9 Missense_Mutation p.I71N 0.29 deleterious(0.03) possibly_damaging(0.776) TCGA-B8-5549-01 6 28251758 28251758 C T PGBD1 Silent p.H56H 0.13 TCGA-B8-5549-01 6 28543685 28543685 T A SCAND3 Missense_Mutation p.E266V 0.33 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-B8-5549-01 7 100411570 100411570 C T EPHB4 Silent p.V554V 0.24 TCGA-B8-5549-01 7 141365016 141365016 C A KIAA1147 Missense_Mutation p.S308I 0.38 tolerated(0.32) benign(0.173) TCGA-B8-5549-01 7 150768602 150768602 C T SLC4A2 Nonsense_Mutation p.R701* 0.17 TCGA-B8-5549-01 7 26411530 26411530 T - SNX10 Frame_Shift_Del p.S135Lfs*17 0.26 TCGA-B8-5549-01 7 6661158 6661158 C T ZNF853 Missense_Mutation p.T179M 0.42 deleterious_low_confidence(0) unknown(0) TCGA-B8-5549-01 8 77776702 77776702 G A ZFHX4 Silent p.K3584K 0.21 TCGA-B8-5549-01 9 104162271 104162271 T C ZNF189 Missense_Mutation p.Y47H 0.25 tolerated(0.07) probably_damaging(0.992) TCGA-B8-5549-01 9 108483903 108483903 G C TMEM38B Missense_Mutation p.E119Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-B8-5549-01 9 125437494 125437494 C T OR1L3 Missense_Mutation p.A29V 0.25 tolerated(0.58) benign(0.001) TCGA-B8-5549-01 9 127650593 127650593 T G GOLGA1 Missense_Mutation p.D615A 0.21 deleterious(0.01) possibly_damaging(0.493) TCGA-B8-5549-01 9 13206010 13206011 - TT MPDZ Frame_Shift_Ins p.M460Kfs*2 0.21 TCGA-B8-5549-01 9 88938408 88938408 C G ZCCHC6 Missense_Mutation p.E753Q 0.29 tolerated_low_confidence(0.17) benign(0.008) TCGA-B8-5549-01 9 99126831 99126831 A G SLC35D2 Missense_Mutation p.M65T 0.22 deleterious(0) probably_damaging(0.989) TCGA-B8-5549-01 X 102508844 102508844 G A TCEAL8 Missense_Mutation p.R22C 0.65 tolerated(0.27) benign(0.007) TCGA-B8-5549-01 X 7268202 7268202 A G STS Missense_Mutation p.N551S 0.14 tolerated(0.51) benign(0) TCGA-B8-5549-01 X 80370335 80370335 T A HMGN5 Missense_Mutation p.K221I 0.67 deleterious_low_confidence(0) unknown(0) TCGA-B8-5550-01 10 21804074 21804074 G A SKIDA1 Missense_Mutation p.S893F 0.23 deleterious(0.01) unknown(0) TCGA-B8-5550-01 10 75393823 75393823 C T MYOZ1 Missense_Mutation p.G168E 0.19 tolerated(0.15) benign(0.077) TCGA-B8-5550-01 10 91162803 91162803 A T IFIT1 Silent p.A257A 0.16 TCGA-B8-5550-01 11 123513374 123513374 G A SCN3B Silent p.Y75Y 0.20 TCGA-B8-5550-01 11 124792312 124792312 G A HEPACAM Missense_Mutation p.P307L 0.16 deleterious(0) probably_damaging(0.948) TCGA-B8-5550-01 11 18159153 18159153 C T MRGPRX3 Missense_Mutation p.P135L 0.22 deleterious(0) probably_damaging(0.942) TCGA-B8-5550-01 11 34378303 34378303 C G ABTB2 Missense_Mutation p.E276D 0.22 tolerated(0.64) probably_damaging(0.978) TCGA-B8-5550-01 11 4673775 4673775 G A OR51E1 Missense_Mutation p.G7S 0.19 tolerated(1) benign(0.004) TCGA-B8-5550-01 11 55860880 55860880 T G OR8I2 Missense_Mutation p.F33V 0.12 tolerated(0.44) benign(0.097) TCGA-B8-5550-01 11 61113379 61113379 A G DAK Silent p.P512P 0.16 TCGA-B8-5550-01 11 77921086 77921086 C T USP35 Nonsense_Mutation p.Q729* 0.12 TCGA-B8-5550-01 12 105582070 105582070 C G APPL2 Missense_Mutation p.V545L 0.21 deleterious(0.01) benign(0.419) TCGA-B8-5550-01 12 12483181 12483181 C T MANSC1 Missense_Mutation p.G359D 0.26 tolerated(0.33) benign(0.001) TCGA-B8-5550-01 12 129180622 129180622 C A TMEM132C Silent p.R635R 0.14 TCGA-B8-5550-01 12 48174657 48174657 G C SLC48A1 3'UTR 0.24 TCGA-B8-5550-01 12 57137871 57137871 C T PRIM1 Missense_Mutation p.E206K 0.20 deleterious(0.02) benign(0.026) TCGA-B8-5550-01 12 7189386 7189386 C T C1R Missense_Mutation p.G381D 0.25 tolerated(0.09) probably_damaging(0.996) TCGA-B8-5550-01 12 75669991 75669991 T G CAPS2 3'UTR 0.22 TCGA-B8-5550-01 12 75716783 75716783 G A CAPS2 Missense_Mutation p.P107S 0.13 tolerated(0.17) benign(0.011) TCGA-B8-5550-01 12 8075533 8075533 A C SLC2A3 Missense_Mutation p.W386G 0.13 deleterious(0) probably_damaging(1) TCGA-B8-5550-01 12 9317897 9317897 G A PZP Silent p.A775A 0.24 TCGA-B8-5550-01 13 77595752 77595752 C G FBXL3 Missense_Mutation p.E82Q 0.15 deleterious(0.01) probably_damaging(0.94) TCGA-B8-5550-01 14 75052556 75052556 C - LTBP2 Splice_Site p.X277_splice 0.21 TCGA-B8-5550-01 14 75052560 75052560 G A LTBP2 Missense_Mutation p.A276V 0.21 tolerated(0.17) benign(0.001) TCGA-B8-5550-01 14 91155923 91155923 T G TTC7B Missense_Mutation p.Y304S 0.16 tolerated(0.23) benign(0.07) TCGA-B8-5550-01 15 20657684 20657684 T A HERC2P3 RNA 0.06 TCGA-B8-5550-01 15 43011011 43011022 GAAAAATGGTTC - STARD9 In_Frame_Del p.R4635_R4639delinsS 0.17 TCGA-B8-5550-01 15 44087392 44087392 C A SERINC4 Nonsense_Mutation p.E455* 0.18 TCGA-B8-5550-01 15 68118347 68118347 C A SKOR1 Missense_Mutation p.Q247K 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.611) TCGA-B8-5550-01 15 75761235 75761235 G C PTPN9 Missense_Mutation p.Q553E 0.16 deleterious(0) probably_damaging(0.997) TCGA-B8-5550-01 16 29816441 29816441 G C KIF22 Missense_Mutation p.E632D 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-B8-5550-01 16 66621879 66621879 C A CMTM2 Missense_Mutation p.H202N 0.25 deleterious(0.04) benign(0.004) TCGA-B8-5550-01 16 681423 681423 A T WFIKKN1 Missense_Mutation p.Q57L 0.43 deleterious(0.03) benign(0.445) TCGA-B8-5550-01 16 74506300 74506300 T - GLG1 Frame_Shift_Del p.I688* 0.16 TCGA-B8-5550-01 16 812721 812721 G T MSLN Missense_Mutation p.G14V 0.23 tolerated(0.08) benign(0.388) TCGA-B8-5550-01 16 84227840 84227840 T C ADAD2 Intron 0.25 TCGA-B8-5550-01 17 36104840 36104840 G T HNF1B Silent p.L12L 0.23 TCGA-B8-5550-01 17 36495345 36495345 T G GPR179 Silent p.P286P 0.19 TCGA-B8-5550-01 17 45518197 45518197 T G EFCAB13 3'UTR 0.29 TCGA-B8-5550-01 17 63010742 63010742 A T GNA13 Missense_Mutation p.L256H 0.21 deleterious(0) probably_damaging(0.97) TCGA-B8-5550-01 17 6733567 6733568 - CTCT TEKT1 Frame_Shift_Ins p.L44Efs*5 0.19 TCGA-B8-5550-01 17 7402389 7402389 T G POLR2A Missense_Mutation p.V456G 0.05 probably_damaging(0.934) TCGA-B8-5550-01 17 74308958 74308958 A G PRPSAP1 Missense_Mutation p.V331A 0.14 deleterious(0.01) benign(0.013) TCGA-B8-5550-01 18 29867671 29867671 A T GAREM Missense_Mutation p.F297I 0.22 deleterious(0) probably_damaging(0.934) TCGA-B8-5550-01 19 10080071 10080072 - GT COL5A3 Frame_Shift_Ins p.P1369Hfs*25 0.22 TCGA-B8-5550-01 19 14589313 14589313 T A GIPC1 Missense_Mutation p.E306V 0.14 deleterious(0.02) benign(0.107) TCGA-B8-5550-01 19 15289963 15289963 G T NOTCH3 Nonsense_Mutation p.Y1197* 0.34 TCGA-B8-5550-01 19 1825905 1825905 G A REXO1 Missense_Mutation p.S650L 0.04 tolerated(0.32) benign(0.001) TCGA-B8-5550-01 19 18273081 18273081 C T PIK3R2 Missense_Mutation p.S324F 0.13 deleterious(0.03) benign(0.04) TCGA-B8-5550-01 19 36125272 36125272 G A RBM42 Missense_Mutation p.A378T 0.10 tolerated(0.26) unknown(0) TCGA-B8-5550-01 19 40876046 40876046 A T PLD3 Nonsense_Mutation p.K194* 0.28 TCGA-B8-5550-01 19 42396144 42396144 G C ARHGEF1 Missense_Mutation p.A107P 0.21 deleterious(0.01) benign(0.339) TCGA-B8-5550-01 19 46313860 46313860 C G RSPH6A Splice_Site p.X296_splice 0.18 TCGA-B8-5550-01 19 55865854 55865854 C - COX6B2 Frame_Shift_Del p.K13Nfs*114 0.18 TCGA-B8-5550-01 19 58967911 58967911 A C ZNF324B Missense_Mutation p.K534Q 0.24 tolerated(0.13) benign(0.002) TCGA-B8-5550-01 19 7805725 7805725 A T CD209 3'UTR 0.19 TCGA-B8-5550-01 1 110300154 110300154 C T EPS8L3 Silent p.K307K 0.21 TCGA-B8-5550-01 1 118166327 118166327 G T FAM46C Silent p.P279P 0.20 TCGA-B8-5550-01 1 118558649 118558649 T A SPAG17 Missense_Mutation p.E1409V 0.22 deleterious(0.01) possibly_damaging(0.743) TCGA-B8-5550-01 1 120491750 120491750 C A NOTCH2 Splice_Site p.X827_splice 0.20 TCGA-B8-5550-01 1 150470153 150470157 CAGAG - TARS2 Frame_Shift_Del p.Q390* 0.28 TCGA-B8-5550-01 1 151079598 151079598 C G GABPB2 Silent p.T274T 0.17 TCGA-B8-5550-01 1 152278699 152278699 C T FLG Missense_Mutation p.G2888E 0.12 possibly_damaging(0.771) TCGA-B8-5550-01 1 197396890 197396890 A T CRB1 Missense_Mutation p.Q812L 0.16 tolerated(0.06) benign(0.134) TCGA-B8-5550-01 1 20082231 20082231 G A TMCO4 Silent p.L137L 0.26 TCGA-B8-5550-01 1 224621471 224621471 T C WDR26 Missense_Mutation p.S113G 0.15 tolerated(0.39) benign(0.159) TCGA-B8-5550-01 1 225586358 225586358 T A LBR 3'Flank 0.19 TCGA-B8-5550-01 1 241661088 241661088 A T FH 3'UTR 0.20 TCGA-B8-5550-01 1 247835536 247835536 C - OR13G1 Frame_Shift_Del p.V270Wfs*2 0.16 TCGA-B8-5550-01 1 249212354 249212354 A C PGBD2 Missense_Mutation p.Y524S 0.19 deleterious(0) probably_damaging(0.991) TCGA-B8-5550-01 1 31836934 31836934 A C ZCCHC17 Missense_Mutation p.D207A 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-B8-5550-01 1 32086611 32086611 C - HCRTR1 Frame_Shift_Del p.M183Wfs*10 0.22 TCGA-B8-5550-01 1 86430689 86430689 T C COL24A1 Intron 0.16 TCGA-B8-5550-01 1 90486390 90486390 T C ZNF326 Missense_Mutation p.V405A 0.16 tolerated(0.82) benign(0.09) TCGA-B8-5550-01 1 92445158 92445158 G A BRDT Silent p.P377P 0.21 TCGA-B8-5550-01 20 20243667 20243667 A T C20orf26 Missense_Mutation p.Q799L 0.14 tolerated(0.27) benign(0.033) TCGA-B8-5550-01 20 30676371 30676371 G A HCK Missense_Mutation p.G339E 0.20 deleterious(0) probably_damaging(0.992) TCGA-B8-5550-01 22 18185226 18185226 T C BCL2L13 Intron 0.12 TCGA-B8-5550-01 22 41525980 41525989 AATGCTGGTG - EP300 Frame_Shift_Del p.N419Ifs*9 0.13 TCGA-B8-5550-01 22 50728432 50728434 CCT - PLXNB2 In_Frame_Del p.R194del 0.12 TCGA-B8-5550-01 2 113146066 113146066 A T RGPD8 Missense_Mutation p.S1486T 0.27 tolerated(0.22) benign(0.119) TCGA-B8-5550-01 2 113146067 113146067 C A RGPD8 Missense_Mutation p.E1485D 0.27 tolerated(0.24) benign(0.201) TCGA-B8-5550-01 2 113316975 113316975 C T POLR1B Missense_Mutation p.A479V 0.18 deleterious(0) benign(0.14) TCGA-B8-5550-01 2 179595296 179595296 T C TTN Silent p.T5988T 0.13 TCGA-B8-5550-01 2 20647544 20647544 C A RHOB Missense_Mutation p.F106L 0.11 deleterious(0.03) benign(0.363) TCGA-B8-5550-01 2 209136347 209136347 C A PIKFYVE Missense_Mutation p.P35H 0.16 deleterious(0) probably_damaging(0.999) TCGA-B8-5550-01 2 241725926 241725926 C A KIF1A Missense_Mutation p.S145I 0.17 deleterious(0) probably_damaging(1) TCGA-B8-5550-01 2 29543616 29543616 C T ALK Splice_Site p.X516_splice 0.34 TCGA-B8-5550-01 2 64779745 64779769 AGTTGGTTCTCCCAAAGAAGAAAGT - AFTPH Frame_Shift_Del p.V380Efs*23 0.25 TCGA-B8-5550-01 2 69409628 69409628 C T ANTXR1 Missense_Mutation p.R397C 0.17 deleterious(0) probably_damaging(1) TCGA-B8-5550-01 2 99136447 99136447 C T INPP4A 5'UTR 0.32 TCGA-B8-5550-01 3 5022085 5022085 A G BHLHE40 Missense_Mutation p.K84E 0.18 deleterious(0.01) benign(0.349) TCGA-B8-5550-01 3 52438502 52438503 - C BAP1 Frame_Shift_Ins p.E406Gfs*3 0.22 TCGA-B8-5550-01 3 93733337 93733337 C T STX19 Silent p.E259E 0.19 TCGA-B8-5550-01 4 111543508 111543508 A C PITX2 Missense_Mutation p.S37A 0.21 tolerated_low_confidence(0.06) benign(0.014) TCGA-B8-5550-01 4 119202944 119202944 C T PRSS12 3'UTR 0.17 TCGA-B8-5550-01 4 138452585 138452585 C T PCDH18 Missense_Mutation p.D220N 0.20 deleterious(0) probably_damaging(1) TCGA-B8-5550-01 4 140188044 140188044 C A MGARP Missense_Mutation p.E144D 0.24 tolerated(0.37) benign(0.016) TCGA-B8-5550-01 4 145916455 145916455 G A ANAPC10 3'UTR 0.25 TCGA-B8-5550-01 4 187539377 187539377 T G FAT1 Missense_Mutation p.E2788A 0.20 possibly_damaging(0.515) TCGA-B8-5550-01 4 57216203 57216203 C A AASDH Missense_Mutation p.D572Y 0.14 deleterious(0.01) benign(0.078) TCGA-B8-5550-01 4 88902880 88902880 A G SPP1 Missense_Mutation p.D157G 0.20 tolerated(0.12) probably_damaging(0.959) TCGA-B8-5550-01 5 115348099 115348099 T A AQPEP Missense_Mutation p.I759K 0.29 deleterious(0) possibly_damaging(0.798) TCGA-B8-5550-01 5 130506681 130506681 G T LYRM7 5'UTR 0.11 TCGA-B8-5550-01 5 13717541 13717541 C A DNAH5 Missense_Mutation p.Q4196H 0.42 possibly_damaging(0.522) TCGA-B8-5550-01 5 140502934 140502934 C A PCDHB4 Missense_Mutation p.Q452K 0.13 deleterious_low_confidence(0.01) benign(0.349) TCGA-B8-5550-01 5 142500712 142500712 G C ARHGAP26 Missense_Mutation p.K566N 0.30 deleterious(0) benign(0.442) TCGA-B8-5550-01 5 147505289 147505289 G A SPINK5 Missense_Mutation p.E945K 0.29 tolerated(0.09) benign(0.011) TCGA-B8-5550-01 5 14751223 14751226 CTTG - ANKH Frame_Shift_Del p.Y213* 0.13 TCGA-B8-5550-01 5 149431890 149431890 G C HMGXB3 3'UTR 0.37 TCGA-B8-5550-01 5 151049279 151049279 C - SPARC Frame_Shift_Del p.E133Rfs*28 0.21 TCGA-B8-5550-01 5 156750963 156750963 T C CYFIP2 Missense_Mutation p.I543T 0.13 tolerated(0.1) benign(0.103) TCGA-B8-5550-01 5 173317715 173317715 C - CPEB4 Frame_Shift_Del p.L328* 0.19 TCGA-B8-5550-01 5 23524514 23524514 A G PRDM9 Missense_Mutation p.Y341C 0.07 deleterious(0) possibly_damaging(0.612) TCGA-B8-5550-01 5 32270932 32270932 T C MTMR12 Silent p.E160E 0.14 TCGA-B8-5550-01 5 34880314 34880314 T C TTC23L Silent p.S326S 0.18 TCGA-B8-5550-01 6 116757866 116757866 C T DSE Silent p.N745N 0.11 TCGA-B8-5550-01 6 117718129 117718129 G T ROS1 Missense_Mutation p.T243K 0.11 deleterious(0.01) probably_damaging(0.975) TCGA-B8-5550-01 6 26598312 26598312 T C ABT1 Missense_Mutation p.F138L 0.13 deleterious(0.01) probably_damaging(0.93) TCGA-B8-5550-01 6 31431910 31431910 G A HCP5 RNA 0.21 TCGA-B8-5550-01 6 38881667 38881667 T A DNAH8 Missense_Mutation p.L3084H 0.18 probably_damaging(1) TCGA-B8-5550-01 6 4892580 4892580 G C CDYL Missense_Mutation p.A220P 0.22 tolerated(0.09) possibly_damaging(0.813) TCGA-B8-5550-01 6 4892581 4892581 C A CDYL Missense_Mutation p.A220D 0.22 tolerated(0.21) benign(0.077) TCGA-B8-5550-01 6 52054066 52054066 C A IL17A Silent p.T148T 0.24 TCGA-B8-5550-01 6 64430400 64430400 A T EYS 3'UTR 0.22 TCGA-B8-5550-01 7 100405125 100405125 G C EPHB4 Silent p.A732A 0.38 TCGA-B8-5550-01 7 123143012 123143012 A G IQUB Missense_Mutation p.C285R 0.11 deleterious(0.02) possibly_damaging(0.786) TCGA-B8-5550-01 7 16131136 16131136 A G ISPD 3'UTR 0.29 TCGA-B8-5550-01 7 40488943 40488943 G C SUGCT Missense_Mutation p.A299P 0.15 tolerated(0.23) possibly_damaging(0.499) TCGA-B8-5550-01 7 91630212 91630212 G T AKAP9 Missense_Mutation p.K327N 0.21 possibly_damaging(0.799) TCGA-B8-5550-01 7 91724470 91724470 G T AKAP9 Missense_Mutation p.D3238Y 0.14 probably_damaging(0.922) TCGA-B8-5550-01 7 93551485 93551485 G C GNG11 Missense_Mutation p.K12N 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-B8-5550-01 8 124799957 124799957 G C FAM91A1 Missense_Mutation p.E415D 0.17 deleterious(0) possibly_damaging(0.868) TCGA-B8-5550-01 8 18666349 18666349 G A PSD3 Intron 0.23 TCGA-B8-5550-01 8 28976473 28976473 G - KIF13B Frame_Shift_Del p.P1191Qfs*10 0.18 TCGA-B8-5550-01 8 61471447 61471447 A T RAB2A Missense_Mutation p.D28V 0.19 deleterious(0) probably_damaging(0.987) TCGA-B8-5550-01 9 117130825 117130825 T A AKNA Silent p.G489G 0.21 TCGA-B8-5550-01 9 127214928 127214928 T A GPR144 Silent p.V88V 0.29 TCGA-B8-5550-01 9 131678590 131678590 C T LRRC8A Silent p.F791F 0.21 TCGA-B8-5550-01 9 21334022 21334022 C T KLHL9 Missense_Mutation p.M279I 0.17 deleterious(0.01) benign(0.15) TCGA-B8-5550-01 9 37441237 37441237 A G ZBTB5 Missense_Mutation p.C438R 0.15 tolerated_low_confidence(0.14) benign(0.062) TCGA-B8-5550-01 9 75545843 75545843 T C ALDH1A1 Silent p.L88L 0.14 TCGA-B8-5550-01 X 39931683 39931683 G T BCOR Nonsense_Mutation p.Y972* 0.29 TCGA-B8-5550-01 X 41428920 41428920 C T CASK Splice_Site p.X528_splice 0.09 TCGA-B8-5550-01 X 44703341 44703341 C A DUSP21 5'UTR 0.38 TCGA-B8-5551-01 10 43088522 43088522 G A ZNF33B Nonsense_Mutation p.Q626* 0.11 TCGA-B8-5551-01 10 43596135 43596135 T C RET Missense_Mutation p.L101P 0.09 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-B8-5551-01 10 96534859 96534859 G A CYP2C19 Silent p.L71L 0.11 TCGA-B8-5551-01 11 113694390 113694391 TT - USP28 Frame_Shift_Del p.N407* 0.18 TCGA-B8-5551-01 11 120957574 120957574 C A TBCEL Silent p.V348V 0.06 TCGA-B8-5551-01 12 123340840 123340840 G C HIP1R Silent p.L450L 0.14 TCGA-B8-5551-01 12 123340841 123340841 A T HIP1R Nonsense_Mutation p.K451* 0.14 TCGA-B8-5551-01 12 18891595 18891595 C T CAPZA3 Silent p.D131D 0.15 TCGA-B8-5551-01 12 4398012 4398012 T C CCND2 Silent p.F192F 0.15 TCGA-B8-5551-01 12 54393943 54393943 A G HOXC9 5'UTR 0.07 TCGA-B8-5551-01 12 56662982 56662982 G - COQ10A Frame_Shift_Del p.V141Sfs*30 0.17 TCGA-B8-5551-01 12 68646407 68646407 C A IL22 Silent p.L91L 0.13 TCGA-B8-5551-01 12 96397644 96397644 C T LTA4H Missense_Mutation p.A529T 0.13 tolerated(0.38) benign(0.001) TCGA-B8-5551-01 13 48954209 48954209 T G RB1 Missense_Mutation p.I470M 0.07 tolerated(0.07) possibly_damaging(0.528) TCGA-B8-5551-01 14 75323583 75323583 G C PROX2 Missense_Mutation p.P283R 0.05 deleterious(0.04) benign(0.241) TCGA-B8-5551-01 14 96752043 96752043 G A ATG2B 3'UTR 0.27 TCGA-B8-5551-01 15 34129125 34129125 C G RYR3 Missense_Mutation p.L3863V 0.04 probably_damaging(0.961) TCGA-B8-5551-01 15 52476846 52476846 C T GNB5 Missense_Mutation p.V10I 0.07 tolerated_low_confidence(0.07) benign(0.03) TCGA-B8-5551-01 15 56959007 56959007 G A ZNF280D Missense_Mutation p.P575S 0.15 tolerated(0.19) benign(0.004) TCGA-B8-5551-01 15 74565206 74565206 C G CCDC33 Missense_Mutation p.R245G 0.10 deleterious(0.01) possibly_damaging(0.858) TCGA-B8-5551-01 15 99465458 99465469 CACCTACAACAT - IGF1R In_Frame_Del p.Y763_T766del 0.13 TCGA-B8-5551-01 16 16256866 16256866 G A ABCC6 Nonsense_Mutation p.R1164* 0.10 TCGA-B8-5551-01 16 84101412 84101412 C T MBTPS1 Silent p.V696V 0.09 TCGA-B8-5551-01 17 1650770 1650770 A G SERPINF2 Missense_Mutation p.T227A 0.12 tolerated(0.18) benign(0.011) TCGA-B8-5551-01 17 26969021 26969021 T C KIAA0100 Missense_Mutation p.T218A 0.19 tolerated(0.74) benign(0.001) TCGA-B8-5551-01 17 27409435 27409435 G T MYO18A Missense_Mutation p.D1973E 0.16 deleterious(0.02) benign(0.162) TCGA-B8-5551-01 17 30551875 30551875 T A RHOT1 3'UTR 0.12 TCGA-B8-5551-01 17 30551882 30551882 A C RHOT1 3'UTR 0.13 TCGA-B8-5551-01 17 33513509 33513509 A G UNC45B Silent p.E909E 0.09 TCGA-B8-5551-01 17 39296619 39296619 A T KRTAP4-6 Missense_Mutation p.C41S 0.67 tolerated(0.17) unknown(0) TCGA-B8-5551-01 17 42476348 42476348 A G GPATCH8 Missense_Mutation p.S1033P 0.16 deleterious(0.01) benign(0.184) TCGA-B8-5551-01 17 72436825 72436826 - CCT GPRC5C In_Frame_Ins p.T349_K350insS 0.08 TCGA-B8-5551-01 18 15323316 15323316 G C RNU6-721P 5'Flank 0.11 TCGA-B8-5551-01 18 19231495 19231495 A T ABHD3 3'UTR 0.15 TCGA-B8-5551-01 18 19231521 19231521 T A ABHD3 3'UTR 0.18 TCGA-B8-5551-01 18 19231546 19231546 T A ABHD3 3'UTR 0.19 TCGA-B8-5551-01 18 60227848 60227848 G A ZCCHC2 Silent p.K507K 0.07 TCGA-B8-5551-01 18 6983124 6983124 G T LAMA1 Missense_Mutation p.H1924N 0.14 tolerated(0.32) benign(0.002) TCGA-B8-5551-01 19 15918103 15918103 C G OR10H1 Missense_Mutation p.V249L 0.16 deleterious(0) probably_damaging(0.999) TCGA-B8-5551-01 19 37314189 37314189 G T ZNF790 Missense_Mutation p.P76Q 0.13 deleterious(0.03) benign(0.424) TCGA-B8-5551-01 19 51767287 51767287 G T SIGLECL1 5'UTR 0.06 TCGA-B8-5551-01 19 51870775 51870775 G C CLDND2 Missense_Mutation p.N122K 0.18 tolerated(0.58) probably_damaging(0.913) TCGA-B8-5551-01 19 55899365 55899365 C G RPL28 Missense_Mutation p.S91R 0.14 tolerated(0.18) benign(0.304) TCGA-B8-5551-01 1 114423724 114423724 C G BCL2L15 3'UTR 0.04 TCGA-B8-5551-01 1 152733814 152733814 G T KPRP 3'UTR 0.13 TCGA-B8-5551-01 1 154966078 154966078 G A LENEP 5'UTR 0.24 TCGA-B8-5551-01 1 1597429 1597429 G A SLC35E2B Missense_Mutation p.S337F 0.11 tolerated(0.15) possibly_damaging(0.798) TCGA-B8-5551-01 20 9318701 9318701 G T PLCB4 Missense_Mutation p.G71V 0.14 deleterious(0) possibly_damaging(0.869) TCGA-B8-5551-01 20 9495509 9495509 C T LAMP5 Nonsense_Mutation p.Q4* 0.18 TCGA-B8-5551-01 21 44521530 44521530 G C U2AF1 Intron 0.03 TCGA-B8-5551-01 2 155295127 155295127 A G GALNT13 Silent p.K473K 0.03 TCGA-B8-5551-01 2 159537313 159537313 T - PKP4 3'UTR 0.40 TCGA-B8-5551-01 2 62728554 62728554 G T TMEM17 Silent p.L129L 0.20 TCGA-B8-5551-01 3 10188254 10188254 A C VHL Missense_Mutation p.T133P 0.17 tolerated(0.06) possibly_damaging(0.554) TCGA-B8-5551-01 3 123675113 123675113 G A CCDC14 Intron 0.10 TCGA-B8-5551-01 3 124906161 124906161 C T SLC12A8 Missense_Mutation p.G104S 0.08 deleterious(0) probably_damaging(1) TCGA-B8-5551-01 3 155215167 155215167 T G PLCH1 Missense_Mutation p.E600D 0.14 tolerated(0.64) benign(0.02) TCGA-B8-5551-01 3 183859715 183859715 G A EIF2B5 Missense_Mutation p.D387N 0.10 tolerated(0.3) benign(0.005) TCGA-B8-5551-01 3 24018838 24018838 A - NR1D2 Frame_Shift_Del p.K557Sfs*8 0.14 TCGA-B8-5551-01 3 42734320 42734320 C T HHATL Missense_Mutation p.V480I 0.21 tolerated(0.48) benign(0.016) TCGA-B8-5551-01 3 52443729 52443729 C T BAP1 Splice_Site p.X23_splice 0.18 TCGA-B8-5551-01 4 126242662 126242662 A T FAT4 Missense_Mutation p.E1699V 0.11 probably_damaging(0.98) TCGA-B8-5551-01 4 680061 680061 C T MFSD7 Missense_Mutation p.G109R 0.18 deleterious(0) probably_damaging(1) TCGA-B8-5551-01 5 140432180 140432180 C T PCDHB1 Silent p.D375D 0.17 TCGA-B8-5551-01 5 149619293 149619293 T G CAMK2A Missense_Mutation p.K331Q 0.13 tolerated_low_confidence(0.52) benign(0.025) TCGA-B8-5551-01 5 167945006 167945006 G - RARS Frame_Shift_Del p.A605Qfs*24 0.14 TCGA-B8-5551-01 5 176734208 176734226 AAGTTATGAAAGAGGCTTT - MXD3 3'UTR 0.10 TCGA-B8-5551-01 5 42711376 42711376 G T GHR Missense_Mutation p.R229L 0.13 deleterious(0) benign(0.129) TCGA-B8-5551-01 5 75597267 75597268 - A SV2C Frame_Shift_Ins p.S634Ifs*22 0.13 TCGA-B8-5551-01 6 139488339 139488339 A G HECA Missense_Mutation p.N397S 0.09 tolerated(0.35) probably_damaging(0.987) TCGA-B8-5551-01 6 2949225 2949225 T G SERPINB6 Missense_Mutation p.I218L 0.06 tolerated(0.08) benign(0.248) TCGA-B8-5551-01 7 5348898 5348898 G A TNRC18 Silent p.A2830A 0.16 TCGA-B8-5551-01 7 72416676 72416677 GA - POM121 Intron 0.16 TCGA-B8-5551-01 7 878492 878496 ATTTG - SUN1 Frame_Shift_Del p.D47Sfs*7 0.09 TCGA-B8-5551-01 8 33451243 33451243 C T DUSP26 Missense_Mutation p.E82K 0.09 tolerated(0.66) possibly_damaging(0.832) TCGA-B8-5551-01 8 77768349 77768349 T C ZFHX4 Silent p.L3064L 0.08 TCGA-B8-5551-01 8 82614775 82614775 C A ZFAND1 3'UTR 0.16 TCGA-B8-5551-01 X 110987973 110987973 C A ALG13 Missense_Mutation p.P925T 0.24 tolerated(0.41) possibly_damaging(0.637) TCGA-B8-5551-01 X 118724876 118724876 T A NKRF Missense_Mutation p.Q186L 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-B8-5551-01 X 153129373 153129373 C A L1CAM Missense_Mutation p.C1141F 0.14 deleterious(0) probably_damaging(1) TCGA-B8-5551-01 X 153297817 153297817 G A MECP2 Missense_Mutation p.A85V 0.08 deleterious(0.02) benign(0.121) TCGA-B8-5551-01 X 53114483 53114483 G T TSPYL2 Missense_Mutation p.K406N 0.03 deleterious(0) probably_damaging(0.931) TCGA-B8-5552-01 10 121567483 121567483 C T INPP5F Missense_Mutation p.P494S 0.17 deleterious(0.01) probably_damaging(1) TCGA-B8-5552-01 10 329235 329235 G T DIP2C Missense_Mutation p.T1424N 0.15 deleterious(0) probably_damaging(0.997) TCGA-B8-5552-01 11 111591208 111591208 T A SIK2 Missense_Mutation p.I501N 0.15 deleterious(0.03) benign(0.109) TCGA-B8-5552-01 11 33308096 33308096 A C HIPK3 Missense_Mutation p.N46H 0.17 tolerated(0.72) possibly_damaging(0.907) TCGA-B8-5552-01 11 3846652 3846652 G A PGAP2 Silent p.L304L 0.24 TCGA-B8-5552-01 12 51685607 51685607 G T BIN2 Missense_Mutation p.P428H 0.12 tolerated_low_confidence(0.56) benign(0.003) TCGA-B8-5552-01 14 102548486 102548486 T C HSP90AA1 Missense_Mutation p.H806R 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-B8-5552-01 14 75583974 75583974 T C NEK9 Missense_Mutation p.N229S 0.16 tolerated(0.07) benign(0.284) TCGA-B8-5552-01 15 78917593 78917593 C T CHRNB4 Missense_Mutation p.R460Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-B8-5552-01 15 78921969 78921969 G T CHRNB4 Missense_Mutation p.F226L 0.18 tolerated(0.23) probably_damaging(0.998) TCGA-B8-5552-01 16 109479 109479 A G RHBDF1 Missense_Mutation p.S611P 0.19 deleterious(0) probably_damaging(0.998) TCGA-B8-5552-01 16 79632954 79632954 G T MAF Missense_Mutation p.S282R 0.22 deleterious(0) probably_damaging(0.986) TCGA-B8-5552-01 18 74778271 74778271 T A MBP Missense_Mutation p.E41V 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.555) TCGA-B8-5552-01 19 51994812 51994812 T A SIGLEC12 3'UTR 0.06 TCGA-B8-5552-01 1 155225979 155225979 A G SCAMP3 3'UTR 0.20 TCGA-B8-5552-01 20 30438442 30438442 T C DUSP15 Missense_Mutation p.Q155R 0.15 tolerated_low_confidence(0.18) benign(0.043) TCGA-B8-5552-01 20 48130813 48130813 C T PTGIS Silent p.S325S 0.18 TCGA-B8-5552-01 2 179614716 179614716 A G TTN Intron 0.14 TCGA-B8-5552-01 2 30756119 30756119 T A LCLAT1 Nonsense_Mutation p.Y139* 0.14 TCGA-B8-5552-01 2 37315582 37315582 C T GPATCH11 Nonsense_Mutation p.Q16* 0.21 TCGA-B8-5552-01 3 139077639 139077639 T G COPB2 Missense_Mutation p.N834H 0.21 tolerated(0.07) benign(0.005) TCGA-B8-5552-01 3 14214467 14214467 C A XPC Missense_Mutation p.A67S 0.18 tolerated_low_confidence(0.16) benign(0.15) TCGA-B8-5552-01 3 16475443 16475443 G A RFTN1 Missense_Mutation p.H83Y 0.19 deleterious(0.02) probably_damaging(0.988) TCGA-B8-5552-01 4 184601356 184601356 A T TRAPPC11 Missense_Mutation p.Y350F 0.20 tolerated(0.15) benign(0.418) TCGA-B8-5552-01 5 176562399 176562399 G A NSD1 Missense_Mutation p.D99N 0.24 deleterious_low_confidence(0.02) benign(0.227) TCGA-B8-5552-01 5 33576384 33576384 G A ADAMTS12 Silent p.L1249L 0.14 TCGA-B8-5552-01 6 135787354 135787354 C T AHI1 Missense_Mutation p.S116N 0.05 tolerated(0.52) benign(0.007) TCGA-B8-5552-01 6 31779631 31779631 G A HSPA1L Missense_Mutation p.T40I 0.19 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-B8-5552-01 7 107542792 107542792 A G DLD Missense_Mutation p.E74G 0.20 tolerated(1) benign(0.003) TCGA-B8-5552-01 X 106117008 106117008 G T TBC1D8B Missense_Mutation p.G1059V 0.20 tolerated(0.22) benign(0.001) TCGA-B8-5552-01 X 73960856 73960856 C A KIAA2022 Missense_Mutation p.S1179I 0.20 tolerated(0.06) benign(0.021) TCGA-B8-5553-01 10 42833531 42833531 C T RP11-313J2.1 RNA 0.20 TCGA-B8-5553-01 10 60556181 60556181 G T BICC1 Missense_Mutation p.G421W 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-B8-5553-01 10 91348527 91348530 TCTA - PANK1 Frame_Shift_Del p.I539Tfs*17 0.18 TCGA-B8-5553-01 11 1268382 1268382 C A MUC5B Silent p.T3424T 0.20 TCGA-B8-5553-01 11 15267755 15267755 T C INSC 3'UTR 0.18 TCGA-B8-5553-01 11 16811356 16811356 C - PLEKHA7 Frame_Shift_Del p.G1041Vfs*31 0.15 TCGA-B8-5553-01 11 47599226 47599226 T G KBTBD4 Missense_Mutation p.K125T 0.16 tolerated(0.15) benign(0.099) TCGA-B8-5553-01 11 62751877 62751877 C T SLC22A6 Missense_Mutation p.A96T 0.16 tolerated(0.77) benign(0.005) TCGA-B8-5553-01 11 62782189 62782189 T C SLC22A8 Missense_Mutation p.N81S 0.18 tolerated(0.12) possibly_damaging(0.687) TCGA-B8-5553-01 11 64520614 64520614 C A PYGM Missense_Mutation p.K483N 0.27 deleterious(0) probably_damaging(1) TCGA-B8-5553-01 11 73388734 73388734 T C RAB6A 3'UTR 0.08 TCGA-B8-5553-01 11 73686108 73686108 C A UCP2 Nonsense_Mutation p.E292* 0.18 TCGA-B8-5553-01 11 9228286 9228286 A G DENND5A Silent p.S75S 0.21 TCGA-B8-5553-01 12 124104644 124104645 AG - DDX55 Frame_Shift_Del p.K587Nfs*12 0.18 TCGA-B8-5553-01 12 22796723 22796723 A C ETNK1 Missense_Mutation p.K150N 0.06 deleterious(0) probably_damaging(0.999) TCGA-B8-5553-01 12 31850698 31850698 C G AMN1 Missense_Mutation p.Q170H 0.18 tolerated(0.58) possibly_damaging(0.894) TCGA-B8-5553-01 12 6923543 6923543 C T CD4 Intron 0.25 TCGA-B8-5553-01 13 51854762 51854762 T G FAM124A Silent p.P373P 0.24 TCGA-B8-5553-01 13 98666445 98666445 G A IPO5 Missense_Mutation p.E786K 0.24 deleterious(0.03) possibly_damaging(0.702) TCGA-B8-5553-01 14 20389123 20389123 T C OR4K5 Missense_Mutation p.Y120H 0.21 deleterious(0) probably_damaging(0.968) TCGA-B8-5553-01 14 44976355 44976355 T C FSCB 5'UTR 0.09 TCGA-B8-5553-01 15 50596162 50596162 C A GABPB1 Splice_Site p.X92_splice 0.22 TCGA-B8-5553-01 15 52505431 52505431 T C MYO5C Silent p.Q1365Q 0.11 TCGA-B8-5553-01 15 63930676 63930676 C G HERC1 Missense_Mutation p.Q4009H 0.19 probably_damaging(0.998) TCGA-B8-5553-01 15 83224832 83224832 A G CPEB1 Missense_Mutation p.L216P 0.15 deleterious_low_confidence(0.03) probably_damaging(0.988) TCGA-B8-5553-01 15 89392971 89392971 C T ACAN Intron 0.24 TCGA-B8-5553-01 16 23647615 23647615 G T PALB2 Silent p.I84I 0.19 TCGA-B8-5553-01 16 31202116 31202116 C - FUS Frame_Shift_Del p.P450Lfs*79 0.14 TCGA-B8-5553-01 16 4637040 4637040 A G C16orf96 Missense_Mutation p.T785A 0.23 tolerated(0.48) benign(0.388) TCGA-B8-5553-01 17 41154694 41154694 T A RPL27 Missense_Mutation p.S86T 0.16 tolerated(0.75) benign(0.025) TCGA-B8-5553-01 17 4442239 4442239 T G MYBBP1A Missense_Mutation p.K1332T 0.06 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-B8-5553-01 17 76991241 76991241 C A CANT1 Nonsense_Mutation p.E232* 0.21 TCGA-B8-5553-01 18 44424802 44424803 TC - PIAS2 Splice_Site p.X288_splice 0.22 TCGA-B8-5553-01 19 18273796 18273796 C A PIK3R2 Missense_Mutation p.L377M 0.23 deleterious(0) probably_damaging(0.997) TCGA-B8-5553-01 19 21544638 21544639 - G ZNF738 Frame_Shift_Ins p.E26Gfs*6 0.20 TCGA-B8-5553-01 19 35632104 35632104 G T FXYD1 Missense_Mutation p.V55L 0.25 tolerated(0.07) benign(0.42) TCGA-B8-5553-01 19 50840697 50840697 A T NAPSB RNA 0.07 TCGA-B8-5553-01 19 5133906 5133906 T A KDM4B Missense_Mutation p.F640Y 0.10 benign(0.014) TCGA-B8-5553-01 19 53611977 53611977 T A ZNF415 Nonsense_Mutation p.K441* 0.26 TCGA-B8-5553-01 1 112042593 112042593 G A ADORA3 Intron 0.15 TCGA-B8-5553-01 1 152287813 152287813 T A FLG Missense_Mutation p.E40D 0.19 benign(0.139) TCGA-B8-5553-01 1 154574162 154574162 G T ADAR Missense_Mutation p.A319D 0.24 deleterious(0) probably_damaging(0.993) TCGA-B8-5553-01 1 160314341 160314341 T C NCSTN Intron 0.22 TCGA-B8-5553-01 1 166826919 166826919 G A TADA1 Missense_Mutation p.A298V 0.21 deleterious(0.01) possibly_damaging(0.78) TCGA-B8-5553-01 1 32138105 32138105 T A COL16A1 Splice_Site p.X1007_splice 0.24 TCGA-B8-5553-01 1 33960735 33960736 TA - ZSCAN20 Frame_Shift_Del p.Y931* 0.20 TCGA-B8-5553-01 20 33567237 33567237 G T MYH7B Nonsense_Mutation p.E88* 0.13 TCGA-B8-5553-01 20 36642221 36642221 T A TTI1 5'UTR 0.17 TCGA-B8-5553-01 21 45994138 45994138 T G KRTAP10-4 Missense_Mutation p.I168S 0.19 tolerated(0.4) unknown(0) TCGA-B8-5553-01 22 29752552 29752552 G T AP1B1 Missense_Mutation p.S193R 0.05 tolerated(0.14) benign(0.003) TCGA-B8-5553-01 2 109297164 109297165 - A LIMS1 Frame_Shift_Ins p.N330Kfs*2 0.12 TCGA-B8-5553-01 2 212293135 212293135 T A ERBB4 Missense_Mutation p.Y906F 0.06 deleterious(0.03) benign(0.046) TCGA-B8-5553-01 2 212293136 212293136 A T ERBB4 Missense_Mutation p.Y906N 0.06 deleterious(0) possibly_damaging(0.88) TCGA-B8-5553-01 2 37126774 37126774 G A STRN Silent p.S229S 0.20 TCGA-B8-5553-01 2 669417 669417 A G TMEM18 3'UTR 0.21 TCGA-B8-5553-01 3 173997037 173997037 T C NLGN1 Missense_Mutation p.S416P 0.04 deleterious(0.01) probably_damaging(0.967) TCGA-B8-5553-01 3 182616538 182616538 C G ATP11B Missense_Mutation p.P1099R 0.16 deleterious(0) benign(0.274) TCGA-B8-5553-01 3 182662737 182662740 ATGT - DCUN1D1 3'UTR 0.09 TCGA-B8-5553-01 3 195507852 195507852 G A MUC4 Silent p.H3533H 0.16 TCGA-B8-5553-01 3 33539923 33539923 T C CLASP2 3'UTR 0.23 TCGA-B8-5553-01 4 177084327 177084327 G A WDR17 Missense_Mutation p.R982H 0.22 deleterious(0) probably_damaging(0.997) TCGA-B8-5553-01 4 38698823 38698823 A G KLF3 Missense_Mutation p.D326G 0.20 deleterious(0) possibly_damaging(0.898) TCGA-B8-5553-01 5 82789433 82789433 T G VCAN Missense_Mutation p.C172G 0.17 deleterious(0) probably_damaging(0.999) TCGA-B8-5553-01 6 116968656 116968656 A G ZUFSP Silent p.C478C 0.04 TCGA-B8-5553-01 6 143832557 143832557 T C FUCA2 Missense_Mutation p.E72G 0.10 deleterious(0) probably_damaging(0.994) TCGA-B8-5553-01 6 161139413 161139413 C G PLG Missense_Mutation p.S292C 0.23 deleterious(0) probably_damaging(0.951) TCGA-B8-5553-01 6 161514010 161514010 G T MAP3K4 Missense_Mutation p.R1090S 0.21 deleterious(0) probably_damaging(0.998) TCGA-B8-5553-01 6 165746570 165746570 C T PDE10A Missense_Mutation p.A772T 0.05 tolerated_low_confidence(0.27) benign(0) TCGA-B8-5553-01 7 138269684 138269684 G C TRIM24 Missense_Mutation p.Q1047H 0.10 tolerated(0.05) benign(0.006) TCGA-B8-5553-01 7 141352681 141352681 A G AGK Missense_Mutation p.D409G 0.20 tolerated(0.07) benign(0.354) TCGA-B8-5553-01 8 57080005 57080005 C T PLAG1 Missense_Mutation p.M100I 0.12 deleterious(0.04) possibly_damaging(0.708) TCGA-B8-5553-01 8 74903724 74903724 C G LY96 Missense_Mutation p.T16S 0.22 tolerated(0.06) possibly_damaging(0.664) TCGA-B8-5553-01 9 108128708 108128708 C T SLC44A1 Nonsense_Mutation p.Q498* 0.20 TCGA-B8-5553-01 9 116854251 116854251 T C KIF12 Missense_Mutation p.R478G 0.27 deleterious_low_confidence(0) benign(0.411) TCGA-B8-5553-01 9 74315738 74315738 T C TMEM2 Missense_Mutation p.N1066S 0.35 tolerated(0.08) benign(0.01) TCGA-B8-5553-01 X 153689812 153689812 A G PLXNA3 Missense_Mutation p.Q323R 0.14 deleterious(0.03) probably_damaging(0.995) TCGA-B8-5553-01 X 17745494 17745494 G C NHS Missense_Mutation p.D1069H 0.19 deleterious(0) probably_damaging(0.999) TCGA-B8-5553-01 X 79941024 79941024 C T BRWD3 Silent p.E1339E 0.23 TCGA-B8-A54D-01 10 104163675 104163675 G T PSD Missense_Mutation p.A923D 0.04 tolerated(0.05) possibly_damaging(0.88) TCGA-B8-A54D-01 10 11971877 11971877 T G UPF2 Missense_Mutation p.K1266Q 0.33 tolerated_low_confidence(0.23) probably_damaging(0.95) TCGA-B8-A54D-01 10 24835070 24835070 A G KIAA1217 Silent p.Q1883Q 0.34 TCGA-B8-A54D-01 10 75185774 75185774 G A MSS51 Silent p.Y288Y 0.19 TCGA-B8-A54D-01 11 2005603 2005603 G C MRPL23-AS1 RNA 0.15 TCGA-B8-A54D-01 11 2005658 2005658 A G MRPL23-AS1 RNA 0.21 TCGA-B8-A54D-01 11 46785045 46785045 C T CKAP5 Missense_Mutation p.A1225T 0.11 tolerated(0.31) benign(0.028) TCGA-B8-A54D-01 11 59837751 59837752 AA - MS4A3 3'UTR 0.20 TCGA-B8-A54D-01 12 105593154 105593154 C G APPL2 Missense_Mutation p.R293T 0.25 deleterious(0) probably_damaging(0.998) TCGA-B8-A54D-01 12 25054786 25054786 C T BCAT1 Missense_Mutation p.G26R 0.26 tolerated(0.19) benign(0.019) TCGA-B8-A54D-01 12 58141022 58141022 G A TSPAN31 Missense_Mutation p.M194I 0.31 tolerated(0.37) benign(0.119) TCGA-B8-A54D-01 12 7559271 7559271 G A CD163L1 Missense_Mutation p.P315L 0.24 tolerated(0.21) probably_damaging(0.975) TCGA-B8-A54D-01 13 20797493 20797493 C T GJB6 Missense_Mutation p.V43M 0.03 deleterious(0) probably_damaging(1) TCGA-B8-A54D-01 13 98637736 98637736 A C IPO5 Missense_Mutation p.Y96S 0.29 tolerated(0.17) possibly_damaging(0.617) TCGA-B8-A54D-01 14 103969260 103969260 C G MARK3 Missense_Mutation p.A653G 0.31 tolerated(0.23) benign(0.001) TCGA-B8-A54D-01 14 50249807 50249807 A T KLHDC2 3'UTR 0.38 TCGA-B8-A54D-01 15 25223654 25223654 G T SNRPN 3'UTR 0.20 TCGA-B8-A54D-01 15 34134178 34134178 C T RYR3 Missense_Mutation p.P4384L 0.36 benign(0.146) TCGA-B8-A54D-01 15 39880809 39880809 C T THBS1 Silent p.L518L 0.21 TCGA-B8-A54D-01 15 40913631 40913631 T G CASC5 Missense_Mutation p.I416S 0.25 tolerated(0.27) benign(0.242) TCGA-B8-A54D-01 15 43299287 43299287 T C UBR1 Silent p.E1135E 0.06 TCGA-B8-A54D-01 15 43620643 43620643 A G LCMT2 Missense_Mutation p.L682S 0.17 deleterious(0) probably_damaging(0.972) TCGA-B8-A54D-01 15 52356312 52356312 C G MAPK6 Nonsense_Mutation p.Y427* 0.28 TCGA-B8-A54D-01 16 20975792 20975792 G A DNAH3 Silent p.I3138I 0.07 TCGA-B8-A54D-01 16 30510483 30510483 A G ITGAL Missense_Mutation p.S641G 0.03 tolerated(0.21) benign(0.014) TCGA-B8-A54D-01 17 18111746 18111746 C A ALKBH5 3'UTR 0.32 TCGA-B8-A54D-01 17 39018816 39018816 C - KRT12 Splice_Site p.X463_splice 0.18 TCGA-B8-A54D-01 17 39637358 39637358 C A KRT35 5'UTR 0.25 TCGA-B8-A54D-01 17 79219509 79219509 C T SLC38A10 Silent p.G1069G 0.30 TCGA-B8-A54D-01 17 80071510 80071510 G A CCDC57 Missense_Mutation p.L257F 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-B8-A54D-01 18 18625289 18625289 G A ROCK1 Missense_Mutation p.A185V 0.36 deleterious(0) possibly_damaging(0.765) TCGA-B8-A54D-01 18 28588335 28588335 C A DSC3 Missense_Mutation p.A474S 0.30 tolerated(0.26) benign(0.08) TCGA-B8-A54D-01 19 22940639 22940639 G T ZNF99 Missense_Mutation p.A691D 0.10 tolerated(0.45) benign(0.02) TCGA-B8-A54D-01 19 39034203 39034203 C A RYR1 Nonsense_Mutation p.S3937* 0.25 TCGA-B8-A54D-01 19 39219949 39219950 - C ACTN4 Frame_Shift_Ins p.D874Rfs*17 0.32 TCGA-B8-A54D-01 19 46206226 46206226 C T QPCTL Silent p.T356T 0.27 TCGA-B8-A54D-01 19 5693656 5693656 G C LONP1 Silent p.R815R 0.28 TCGA-B8-A54D-01 19 57642551 57642552 AA - USP29 Frame_Shift_Del p.N837Ffs*10 0.22 TCGA-B8-A54D-01 1 151131972 151131972 A C TNFAIP8L2 3'UTR 0.16 TCGA-B8-A54D-01 1 159283857 159283857 A G OR10J3 Missense_Mutation p.I198T 0.29 deleterious(0.01) possibly_damaging(0.457) TCGA-B8-A54D-01 1 200972869 200972869 C A KIF21B Missense_Mutation p.D353Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-B8-A54D-01 1 66058511 66058511 C T LEPR Silent p.F222F 0.26 TCGA-B8-A54D-01 20 37536684 37536684 C T PPP1R16B Nonsense_Mutation p.R348* 0.28 TCGA-B8-A54D-01 20 57565004 57565004 G A NELFCD Missense_Mutation p.R268H 0.27 deleterious(0.02) benign(0.046) TCGA-B8-A54D-01 20 62642763 62642763 T G PRPF6 Missense_Mutation p.N477K 0.30 tolerated(0.11) benign(0.089) TCGA-B8-A54D-01 21 40823924 40823924 G T SH3BGR Missense_Mutation p.D31Y 0.29 deleterious_low_confidence(0.01) benign(0.019) TCGA-B8-A54D-01 22 23995369 23995369 G A KB-1572G7.2 RNA 0.27 TCGA-B8-A54D-01 22 50659442 50659442 T - TUBGCP6 Frame_Shift_Del p.R1116Gfs*208 0.24 TCGA-B8-A54D-01 2 102781668 102781668 G T IL1R1 Missense_Mutation p.Q130H 0.25 deleterious(0) probably_damaging(0.995) TCGA-B8-A54D-01 2 109489958 109489958 C T CCDC138 Missense_Mutation p.T582I 0.36 deleterious(0.01) possibly_damaging(0.702) TCGA-B8-A54D-01 2 111435667 111435667 C A BUB1 5'UTR 0.29 TCGA-B8-A54D-01 2 128253724 128253724 A C IWS1 Missense_Mutation p.H522Q 0.40 tolerated(0.2) benign(0.094) TCGA-B8-A54D-01 2 164468082 164468082 A G FIGN Missense_Mutation p.V87A 0.26 tolerated(0.58) benign(0.003) TCGA-B8-A54D-01 2 169985330 169985330 T C LRP2 Missense_Mutation p.E4604G 0.30 benign(0.023) TCGA-B8-A54D-01 2 187626986 187626986 G A FAM171B Silent p.E639E 0.25 TCGA-B8-A54D-01 2 210640757 210640757 C T UNC80 Nonsense_Mutation p.R96* 0.19 TCGA-B8-A54D-01 2 27552294 27552294 A T GTF3C2 Missense_Mutation p.L610Q 0.29 deleterious(0.01) benign(0.099) TCGA-B8-A54D-01 2 54081201 54081201 C G GPR75 Missense_Mutation p.K231N 0.04 deleterious(0.03) benign(0.01) TCGA-B8-A54D-01 3 130125017 130125017 G A COL6A5 Missense_Mutation p.E1475K 0.28 tolerated(0.07) benign(0.059) TCGA-B8-A54D-01 3 137956157 137956157 A C ARMC8 Missense_Mutation p.M192L 0.60 tolerated(0.79) benign(0.016) TCGA-B8-A54D-01 3 156395468 156395468 G A TIPARP 5'UTR 0.73 TCGA-B8-A54D-01 3 183547249 183547249 G A PARL 3'UTR 0.38 TCGA-B8-A54D-01 4 129864168 129864168 T C SCLT1 Missense_Mutation p.K539E 0.33 deleterious(0.01) benign(0.133) TCGA-B8-A54D-01 4 177632651 177632651 A C VEGFC Splice_Site p.X235_splice 0.08 TCGA-B8-A54D-01 4 36230374 36230374 G C ARAP2 Missense_Mutation p.F245L 0.30 tolerated_low_confidence(0.13) benign(0.006) TCGA-B8-A54D-01 5 129070699 129070699 A T ADAMTS19 Silent p.G1123G 0.29 TCGA-B8-A54D-01 5 140580747 140580747 C T PCDHB11 Missense_Mutation p.A467V 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.708) TCGA-B8-A54D-01 5 142264938 142264941 AAAA T ARHGAP26 Nonsense_Mutation p.K154_K155delins* 0.23 TCGA-B8-A54D-01 5 173317385 173317385 G A CPEB4 Missense_Mutation p.G217S 0.36 tolerated_low_confidence(0.49) benign(0.434) TCGA-B8-A54D-01 5 177422878 177422878 G A PROP1 Silent p.S19S 0.35 TCGA-B8-A54D-01 5 179192657 179192657 C A MAML1 Missense_Mutation p.L216M 0.30 tolerated(0.22) benign(0.064) TCGA-B8-A54D-01 5 180432526 180432526 G T BTNL3 Missense_Mutation p.G352V 0.04 tolerated(0.11) benign(0.173) TCGA-B8-A54D-01 5 2747699 2747699 C G IRX2 Silent p.G465G 0.28 TCGA-B8-A54D-01 6 149777859 149777859 G T ZC3H12D Missense_Mutation p.P208H 0.32 deleterious(0) probably_damaging(0.995) TCGA-B8-A54D-01 6 150343177 150343177 C A RAET1L Missense_Mutation p.E96D 0.03 tolerated(1) benign(0.001) TCGA-B8-A54D-01 6 152532709 152532709 C G SYNE1 Missense_Mutation p.E7503D 0.12 benign(0.081) TCGA-B8-A54D-01 6 30652606 30652606 C T PPP1R18 Missense_Mutation p.C397Y 0.21 tolerated_low_confidence(0.22) benign(0.002) TCGA-B8-A54D-01 6 33990548 33990548 C T GRM4 3'UTR 0.32 TCGA-B8-A54D-01 6 90566883 90566883 C - CASP8AP2 RNA 0.31 TCGA-B8-A54D-01 7 138764650 138764650 C A ZC3HAV1 Missense_Mutation p.S346I 0.26 tolerated(0.1) benign(0.004) TCGA-B8-A54D-01 7 157333272 157333272 A C PTPRN2 3'UTR 0.15 TCGA-B8-A54D-01 8 40012019 40012019 C A C8orf4 3'UTR 0.23 TCGA-B8-A54D-01 9 134305624 134305626 AGT - PRRC2B In_Frame_Del p.V32del 0.35 TCGA-B8-A54D-01 9 32631052 32631052 C A TAF1L Missense_Mutation p.R1509L 0.39 deleterious(0.01) possibly_damaging(0.899) TCGA-B8-A54E-01 10 15326057 15326057 C T FAM171A1 Missense_Mutation p.V49I 0.16 tolerated(0.23) benign(0.006) TCGA-B8-A54E-01 11 106681164 106681164 G A GUCY1A2 Missense_Mutation p.S416L 0.17 deleterious(0.02) probably_damaging(0.966) TCGA-B8-A54E-01 11 111179133 111179133 G T COLCA2 Nonsense_Mutation p.E146* 0.09 TCGA-B8-A54E-01 11 36631762 36631762 C T C11orf74 Silent p.L37L 0.11 TCGA-B8-A54E-01 11 49176034 49176034 T C FOLH1 Missense_Mutation p.K545R 0.05 tolerated(0.28) benign(0.001) TCGA-B8-A54E-01 11 85396794 85396794 A G CCDC89 Missense_Mutation p.M127T 0.19 tolerated(0.11) benign(0.048) TCGA-B8-A54E-01 12 123311028 123311028 T C CCDC62 3'UTR 0.10 TCGA-B8-A54E-01 12 15742422 15742422 C T PTPRO Silent p.A1148A 0.24 TCGA-B8-A54E-01 12 53709180 53709180 C A AAAS Missense_Mutation p.W113L 0.30 tolerated(0.65) benign(0.017) TCGA-B8-A54E-01 13 39262502 39262502 G T FREM2 Missense_Mutation p.D341Y 0.20 deleterious(0) possibly_damaging(0.856) TCGA-B8-A54E-01 14 102551708 102551708 T C HSP90AA1 Missense_Mutation p.Y319C 0.22 deleterious_low_confidence(0.05) possibly_damaging(0.858) TCGA-B8-A54E-01 14 31790775 31790775 A G HEATR5A Missense_Mutation p.I1300T 0.13 deleterious(0) possibly_damaging(0.899) TCGA-B8-A54E-01 14 71511884 71511884 G T PCNX Missense_Mutation p.G1301V 0.12 deleterious(0.02) possibly_damaging(0.847) TCGA-B8-A54E-01 15 37110085 37110085 T G CSNK1A1P1 RNA 0.13 TCGA-B8-A54E-01 15 44865878 44865878 C T SPG11 Silent p.L2024L 0.15 TCGA-B8-A54E-01 15 63125758 63125758 T - TLN2 Frame_Shift_Del p.I2353Mfs*42 0.12 TCGA-B8-A54E-01 15 64423922 64423922 T C SNX1 Missense_Mutation p.L351P 0.24 tolerated(0.06) possibly_damaging(0.83) TCGA-B8-A54E-01 16 1723940 1723940 G C CRAMP1L Missense_Mutation p.R1235P 0.40 deleterious(0) probably_damaging(1) TCGA-B8-A54E-01 16 21968784 21968784 A G UQCRC2 Missense_Mutation p.Y55C 0.05 deleterious(0.02) benign(0.037) TCGA-B8-A54E-01 16 32890574 32890574 G A SLC6A10P RNA 0.09 TCGA-B8-A54E-01 16 53319512 53319512 A G CHD9 Missense_Mutation p.I1658V 0.16 benign(0.101) TCGA-B8-A54E-01 16 89294577 89294577 C G ZNF778 Silent p.T599T 0.16 TCGA-B8-A54E-01 17 27076592 27076592 C A TRAF4 Missense_Mutation p.S470R 0.21 deleterious_low_confidence(0) benign(0.216) TCGA-B8-A54E-01 17 33460387 33460387 C T NLE1 Missense_Mutation p.A449T 0.20 tolerated(0.61) benign(0.009) TCGA-B8-A54E-01 17 37922280 37922280 C A IKZF3 Silent p.P431P 0.19 TCGA-B8-A54E-01 17 47486415 47486415 C T PHB Missense_Mutation p.D167N 0.20 deleterious(0.01) benign(0.376) TCGA-B8-A54E-01 17 62498588 62498588 C G DDX5 Missense_Mutation p.D355H 0.12 deleterious(0) possibly_damaging(0.86) TCGA-B8-A54E-01 17 78210873 78210873 G A SLC26A11 Missense_Mutation p.G295R 0.20 tolerated(0.16) benign(0.008) TCGA-B8-A54E-01 17 9674823 9674823 A - DHRS7C Frame_Shift_Del p.N307Kfs*? 0.15 TCGA-B8-A54E-01 18 5290993 5290993 T C ZBTB14 Missense_Mutation p.K405R 0.24 tolerated(0.44) probably_damaging(0.932) TCGA-B8-A54E-01 19 13910579 13910579 A G ZSWIM4 Missense_Mutation p.I67V 0.17 tolerated(0.11) benign(0.048) TCGA-B8-A54E-01 19 36339597 36339597 A T NPHS1 Missense_Mutation p.L371Q 0.16 tolerated(0.41) benign(0.01) TCGA-B8-A54E-01 19 9087398 9087398 C A MUC16 Missense_Mutation p.D1473Y 0.05 unknown(0) TCGA-B8-A54E-01 1 111216166 111216166 G A KCNA3 Silent p.D422D 0.23 TCGA-B8-A54E-01 1 17735562 17735562 G A RCC2 3'UTR 0.20 TCGA-B8-A54E-01 1 24662998 24662998 C T GRHL3 Missense_Mutation p.T98M 0.19 tolerated(0.14) benign(0.009) TCGA-B8-A54E-01 1 46080746 46080746 G A NASP Silent p.L576L 0.20 TCGA-B8-A54E-01 20 2539278 2539278 G A TMC2 Missense_Mutation p.E87K 0.12 tolerated_low_confidence(0.56) benign(0.002) TCGA-B8-A54E-01 2 86444208 86444213 CGAGAT - REEP1 3'UTR 0.13 TCGA-B8-A54E-01 3 121217345 121217345 C T POLQ Missense_Mutation p.R711Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-B8-A54E-01 3 33110387 33110387 A - GLB1 Frame_Shift_Del p.L108Ffs*13 0.17 TCGA-B8-A54E-01 3 38648186 38648186 C T SCN5A Missense_Mutation p.D372N 0.15 deleterious(0) probably_damaging(0.998) TCGA-B8-A54E-01 3 57447287 57447287 C T DNAH12 Missense_Mutation p.D866N 0.17 deleterious(0.01) possibly_damaging(0.822) TCGA-B8-A54E-01 4 119239640 119239640 C T PRSS12 Missense_Mutation p.R348H 0.14 tolerated(0.18) benign(0.015) TCGA-B8-A54E-01 4 7043025 7043025 C A CCDC96 Missense_Mutation p.R547S 0.18 deleterious(0.02) benign(0.058) TCGA-B8-A54E-01 5 126791266 126791266 T A MEGF10 Missense_Mutation p.S1067T 0.16 tolerated(1) possibly_damaging(0.493) TCGA-B8-A54E-01 7 132192900 132192900 T C PLXNA4 Missense_Mutation p.I185V 0.17 tolerated(0.98) benign(0.011) TCGA-B8-A54E-01 7 155095596 155095596 G A INSIG1 Intron 0.14 TCGA-B8-A54E-01 7 157370803 157370803 G A PTPRN2 Silent p.I842I 0.16 TCGA-B8-A54E-01 7 56169490 56169490 A C CHCHD2 3'UTR 0.23 TCGA-B8-A54E-01 7 86493708 86493708 G C GRM3 3'UTR 0.06 TCGA-B8-A54E-01 8 141828438 141828438 A C PTK2 Missense_Mutation p.S269A 0.21 tolerated(0.29) benign(0.02) TCGA-B8-A54E-01 8 143625590 143625590 C A BAI1 Missense_Mutation p.Q1523K 0.22 tolerated(0.37) benign(0.104) TCGA-B8-A54E-01 9 123675921 123675921 C T TRAF1 Silent p.L130L 0.22 TCGA-B8-A54E-01 9 138415133 138415133 G A LCN1 Missense_Mutation p.G93R 0.15 deleterious(0.03) possibly_damaging(0.834) TCGA-B8-A54E-01 9 86917224 86917224 T C SLC28A3 Missense_Mutation p.I139V 0.18 tolerated(0.34) benign(0.255) TCGA-B8-A54E-01 X 15364364 15364364 G T FIGF Missense_Mutation p.P319H 0.16 deleterious(0) probably_damaging(0.982) TCGA-B8-A54E-01 X 70346952 70346952 A T MED12 Missense_Mutation p.N940I 0.19 possibly_damaging(0.837) TCGA-B8-A54E-01 X 91642915 91642915 A C PCDH11X Missense_Mutation p.N1109T 0.02 deleterious(0) probably_damaging(0.999) TCGA-B8-A54F-01 10 32106745 32106745 T G ARHGAP12 Missense_Mutation p.K568Q 0.34 deleterious(0.02) benign(0.042) TCGA-B8-A54F-01 11 26743123 26743123 G A SLC5A12 Nonsense_Mutation p.Q47* 0.38 TCGA-B8-A54F-01 11 47308085 47308085 G T MADD Missense_Mutation p.V885L 0.23 tolerated_low_confidence(0.09) possibly_damaging(0.469) TCGA-B8-A54F-01 11 59610001 59610001 C T GIF Silent p.L142L 0.29 TCGA-B8-A54F-01 11 63327655 63327655 C A HRASLS2 Missense_Mutation p.R7I 0.27 deleterious(0) possibly_damaging(0.492) TCGA-B8-A54F-01 11 71944166 71944166 T G INPPL1 Missense_Mutation p.S667A 0.22 deleterious(0.03) benign(0.291) TCGA-B8-A54F-01 12 104460048 104460048 A - HCFC2 Frame_Shift_Del p.M90Wfs*24 0.28 TCGA-B8-A54F-01 12 105534681 105534681 G T KIAA1033 Missense_Mutation p.R522I 0.37 deleterious(0) probably_damaging(0.988) TCGA-B8-A54F-01 12 42862485 42862485 A C PRICKLE1 Missense_Mutation p.I177M 0.23 deleterious(0.01) possibly_damaging(0.507) TCGA-B8-A54F-01 12 64828356 64828356 C T XPOT Missense_Mutation p.A841V 0.25 deleterious(0.01) benign(0.156) TCGA-B8-A54F-01 14 45687522 45687522 G A MIS18BP1 Silent p.V935V 0.30 TCGA-B8-A54F-01 15 43585768 43585768 G A TGM7 Silent p.H24H 0.31 TCGA-B8-A54F-01 15 78780092 78780092 A G IREB2 Missense_Mutation p.Y576C 0.30 deleterious(0) probably_damaging(0.957) TCGA-B8-A54F-01 17 2908678 2908678 C T RAP1GAP2 Missense_Mutation p.R406W 0.10 deleterious(0) probably_damaging(0.998) TCGA-B8-A54F-01 17 5383886 5383886 A T DERL2 Missense_Mutation p.V115E 0.34 tolerated(0.06) benign(0.158) TCGA-B8-A54F-01 17 67079035 67079035 G A ABCA6 Missense_Mutation p.P1532L 0.08 deleterious(0.01) probably_damaging(0.965) TCGA-B8-A54F-01 19 19330090 19330090 A G NCAN Missense_Mutation p.E147G 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-B8-A54F-01 19 47544291 47544291 G A NPAS1 Silent p.G375G 0.20 TCGA-B8-A54F-01 19 49000732 49000732 G - LMTK3 Frame_Shift_Del p.K1228Sfs*117 0.16 TCGA-B8-A54F-01 19 53770040 53770040 G T VN1R4 Nonsense_Mutation p.Y293* 0.25 TCGA-B8-A54F-01 1 160063632 160063634 CTA - IGSF8 In_Frame_Del p.V257del 0.32 TCGA-B8-A54F-01 1 165697201 165697201 T A TMCO1 3'UTR 0.32 TCGA-B8-A54F-01 1 215963464 215963464 T G USH2A Silent p.G3373G 0.31 TCGA-B8-A54F-01 1 237813287 237813287 C T RYR2 Silent p.H2541H 0.27 TCGA-B8-A54F-01 1 95360467 95360476 ATTGTGAGAT - SLC44A3 Frame_Shift_Del p.I651R 0.09 TCGA-B8-A54F-01 21 42842585 42842585 G A TMPRSS2 Silent p.T424T 0.07 TCGA-B8-A54F-01 22 26423733 26423733 A T MYO18B Intron 0.42 TCGA-B8-A54F-01 22 39126646 39126646 A G GTPBP1 Silent p.R649R 0.17 TCGA-B8-A54F-01 2 32264545 32264545 A T DPY30 5'UTR 0.29 TCGA-B8-A54F-01 2 43931135 43931135 G T PLEKHH2 Missense_Mutation p.A556S 0.10 deleterious(0.04) benign(0.259) TCGA-B8-A54F-01 3 169485430 169485430 G T ACTRT3 Missense_Mutation p.F303L 0.28 deleterious(0.04) probably_damaging(0.982) TCGA-B8-A54F-01 3 53752717 53752717 G A CACNA1D Nonsense_Mutation p.W496* 0.32 TCGA-B8-A54F-01 4 119203061 119203061 T A PRSS12 3'UTR 0.27 TCGA-B8-A54F-01 5 140812344 140812344 C T PCDHGA12 Missense_Mutation p.A673V 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.716) TCGA-B8-A54F-01 5 160067537 160067537 G A ATP10B Missense_Mutation p.R311W 0.34 deleterious(0) probably_damaging(0.997) TCGA-B8-A54F-01 5 173317568 173317568 C G CPEB4 Missense_Mutation p.L278V 0.09 tolerated_low_confidence(0.5) benign(0.194) TCGA-B8-A54F-01 5 61876239 61876239 C G LRRC70 Missense_Mutation p.A325G 0.39 tolerated(0.12) benign(0.007) TCGA-B8-A54F-01 8 37963256 37963256 G C ASH2L Missense_Mutation p.G63A 0.37 tolerated_low_confidence(0.26) benign(0.014) TCGA-B8-A54F-01 8 96166985 96166985 T C PLEKHF2 Missense_Mutation p.M238T 0.29 tolerated(0.62) unknown(0) TCGA-B8-A54F-01 9 130206337 130206337 G A ZNF79 Missense_Mutation p.E120K 0.27 tolerated(0.7) benign(0.005) TCGA-B8-A54F-01 9 35106394 35106394 C T FAM214B Missense_Mutation p.R358Q 0.05 tolerated(0.12) benign(0.01) TCGA-B8-A54F-01 X 134948069 134948069 G T CT45A5 Missense_Mutation p.Q86K 0.30 deleterious(0.03) benign(0.022) TCGA-B8-A54F-01 X 135067943 135067943 C A SLC9A6 Silent p.R94R 0.06 TCGA-B8-A54F-01 X 154317627 154317627 G A BRCC3 Splice_Site p.X164_splice 0.30 TCGA-B8-A54G-01 10 81374725 81374725 C T SFTPA1 3'Flank 0.06 TCGA-B8-A54G-01 11 102567447 102567447 G T MMP27 Missense_Mutation p.P247T 0.20 tolerated(0.67) probably_damaging(0.991) TCGA-B8-A54G-01 11 118530147 118530147 A G TREH Missense_Mutation p.L455P 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-B8-A54G-01 11 129744471 129744471 C T NFRKB Silent p.R686R 0.29 TCGA-B8-A54G-01 11 63320347 63320347 C T HRASLS2 3'UTR 0.20 TCGA-B8-A54G-01 11 66189707 66189708 TC - NPAS4 Frame_Shift_Del p.S98* 0.16 TCGA-B8-A54G-01 11 74989734 74989734 G A ARRB1 Silent p.G179G 0.26 TCGA-B8-A54G-01 11 89896478 89896478 A T NAALAD2 Missense_Mutation p.D359V 0.23 deleterious(0) probably_damaging(0.996) TCGA-B8-A54G-01 11 94801951 94801951 G A SRSF8 3'UTR 0.21 TCGA-B8-A54G-01 12 66800083 66800083 C T GRIP1 Missense_Mutation p.R603H 0.27 deleterious(0.02) benign(0.272) TCGA-B8-A54G-01 14 106963182 106963182 C T IGHV1-45 Missense_Mutation p.G34R 0.09 deleterious(0) probably_damaging(0.928) TCGA-B8-A54G-01 14 24649081 24649081 G A REC8 Silent p.R508R 0.08 TCGA-B8-A54G-01 15 22369360 22369360 G A OR4M2 Missense_Mutation p.R262H 0.07 deleterious(0.05) benign(0.025) TCGA-B8-A54G-01 15 40475923 40475923 A G BUB1B Missense_Mutation p.Q197R 0.22 deleterious(0.04) possibly_damaging(0.7) TCGA-B8-A54G-01 15 79063948 79063948 G T ADAMTS7 Silent p.T785T 0.11 TCGA-B8-A54G-01 15 91418960 91418960 C G FURIN 5'UTR 0.25 TCGA-B8-A54G-01 15 91434273 91434273 A G FES Missense_Mutation p.Y461C 0.26 deleterious(0) probably_damaging(1) TCGA-B8-A54G-01 16 2762633 2762633 G A PRSS27 Silent p.G287G 0.29 TCGA-B8-A54G-01 16 71508977 71508977 G A ZNF19 3'UTR 0.24 TCGA-B8-A54G-01 16 74493639 74493639 G T GLG1 Missense_Mutation p.Q1029K 0.05 tolerated(0.47) benign(0.061) TCGA-B8-A54G-01 17 18874691 18874691 C T FAM83G Missense_Mutation p.R818Q 0.28 tolerated_low_confidence(0.29) benign(0.01) TCGA-B8-A54G-01 17 72428154 72428154 G A GPRC5C 5'UTR 0.25 TCGA-B8-A54G-01 17 72428155 72428155 C A GPRC5C 5'UTR 0.25 TCGA-B8-A54G-01 17 8656449 8656449 C T SPDYE4 3'UTR 0.05 TCGA-B8-A54G-01 19 12992281 12992281 A G DNASE2 5'UTR 0.27 TCGA-B8-A54G-01 19 1785539 1785539 C T ATP8B3 Missense_Mutation p.A1108T 0.32 tolerated(0.29) benign(0.004) TCGA-B8-A54G-01 19 3651893 3651893 A T PIP5K1C Missense_Mutation p.L353H 0.30 deleterious(0) probably_damaging(1) TCGA-B8-A54G-01 19 44891787 44891787 G A ZNF285 Missense_Mutation p.P207L 0.25 tolerated(0.18) benign(0.002) TCGA-B8-A54G-01 19 7811388 7811388 G T CD209 Missense_Mutation p.Q46K 0.07 tolerated(0.08) benign(0.379) TCGA-B8-A54G-01 19 804177 804177 C A PTBP1 Missense_Mutation p.T86N 0.32 deleterious(0) possibly_damaging(0.905) TCGA-B8-A54G-01 1 109394666 109394666 G T AKNAD1 Missense_Mutation p.S207R 0.27 deleterious(0.01) probably_damaging(0.937) TCGA-B8-A54G-01 1 149908139 149908139 T G MTMR11 Intron 0.21 TCGA-B8-A54G-01 1 156144733 156144733 T C SEMA4A Splice_Site p.X478_splice 0.19 TCGA-B8-A54G-01 1 224566567 224566567 G A CNIH4 3'UTR 0.20 TCGA-B8-A54G-01 1 231299713 231299713 C A TRIM67 Missense_Mutation p.A333D 0.22 tolerated(0.15) possibly_damaging(0.543) TCGA-B8-A54G-01 1 237948022 237948022 C T RYR2 Missense_Mutation p.P4337L 0.06 probably_damaging(1) TCGA-B8-A54G-01 20 41385123 41385123 A T PTPRT Missense_Mutation p.Y280N 0.26 deleterious(0) probably_damaging(0.984) TCGA-B8-A54G-01 20 44521497 44521497 A G CTSA Missense_Mutation p.Q211R 0.24 tolerated(0.11) benign(0.001) TCGA-B8-A54G-01 21 45821742 45821742 C T TRPM2 Missense_Mutation p.L834F 0.17 tolerated(1) benign(0.006) TCGA-B8-A54G-01 22 31363805 31363805 T C MORC2 5'UTR 0.20 TCGA-B8-A54G-01 2 208811194 208811194 A T PLEKHM3 Missense_Mutation p.V530E 0.25 deleterious(0) probably_damaging(1) TCGA-B8-A54G-01 2 242396278 242396278 A T FARP2 Missense_Mutation p.S510C 0.30 deleterious(0) possibly_damaging(0.886) TCGA-B8-A54G-01 2 27481621 27481621 C T SLC30A3 Missense_Mutation p.G93S 0.14 deleterious(0.01) probably_damaging(0.947) TCGA-B8-A54G-01 2 74140748 74140748 G C ACTG2 Missense_Mutation p.E196D 0.24 deleterious_low_confidence(0.03) benign(0.009) TCGA-B8-A54G-01 2 89399632 89399633 - TG IGKV1-16 Frame_Shift_Ins p.I24Tfs*4 0.18 TCGA-B8-A54G-01 2 90139576 90139576 A G IGKV1D-16 Missense_Mutation p.Y116C 0.17 tolerated(0.08) benign(0.438) TCGA-B8-A54G-01 3 49138149 49138149 C G QARS Intron 0.11 TCGA-B8-A54G-01 3 52436624 52436624 G A BAP1 Nonsense_Mutation p.Q684* 0.31 TCGA-B8-A54G-01 3 52598063 52598063 T A PBRM1 Intron 0.17 TCGA-B8-A54G-01 4 158065086 158065086 C T GLRB Silent p.D293D 0.08 TCGA-B8-A54G-01 5 140348050 140348050 G A PCDHAC2 Missense_Mutation p.V567I 0.19 tolerated(0.81) benign(0.02) TCGA-B8-A54G-01 5 60188095 60188095 A C ERCC8 Intron 0.23 TCGA-B8-A54G-01 5 90055310 90055310 G A GPR98 Missense_Mutation p.A4009T 0.20 benign(0.018) TCGA-B8-A54G-01 7 112535757 112535757 T G C7orf60 Missense_Mutation p.K114Q 0.32 deleterious(0.03) possibly_damaging(0.67) TCGA-B8-A54G-01 7 44737055 44737055 A G OGDH Missense_Mutation p.Y713C 0.23 deleterious(0) probably_damaging(1) TCGA-B8-A54G-01 7 6080728 6080728 A T EIF2AK1 Missense_Mutation p.V305E 0.15 deleterious(0.02) benign(0.439) TCGA-B8-A54G-01 8 94800159 94800159 C T TMEM67 Silent p.A500A 0.16 TCGA-B8-A54G-01 9 136522231 136522231 C G DBH Silent p.S534S 0.25 TCGA-B8-A54G-01 X 106185874 106185874 T G MORC4 Silent p.A749A 0.06 TCGA-B8-A54G-01 X 118925592 118925592 G T RPL39 5'UTR 0.15 TCGA-B8-A54G-01 X 153063254 153063259 CAGCCT - SSR4 In_Frame_Del p.S113_L114del 0.27 TCGA-B8-A54G-01 X 48763752 48763752 G A SLC35A2 Missense_Mutation p.L115F 0.42 deleterious(0.01) possibly_damaging(0.566) TCGA-B8-A54G-01 X 53461281 53461281 C T HSD17B10 Silent p.A4A 0.50 TCGA-B8-A54H-01 10 119044017 119044017 A T PDZD8 Missense_Mutation p.C743S 0.21 deleterious(0) probably_damaging(0.997) TCGA-B8-A54H-01 10 126097524 126097527 TAAG - OAT Frame_Shift_Del p.L70Gfs*3 0.15 TCGA-B8-A54H-01 10 55571355 55571355 C G PCDH15 Missense_Mutation p.L1466F 0.06 tolerated_low_confidence(0.23) benign(0.032) TCGA-B8-A54H-01 10 68940164 68940164 T C CTNNA3 Missense_Mutation p.T320A 0.20 deleterious(0) possibly_damaging(0.523) TCGA-B8-A54H-01 10 80961448 80961448 A G ZMIZ1 Missense_Mutation p.Q20R 0.33 possibly_damaging(0.885) TCGA-B8-A54H-01 11 111780889 111780889 C T CRYAB Intron 0.36 TCGA-B8-A54H-01 11 117115242 117115242 C T RNF214 Missense_Mutation p.L254F 0.26 tolerated(0.12) benign(0.081) TCGA-B8-A54H-01 11 118967725 118967725 G C DPAGT1 Missense_Mutation p.L404V 0.21 tolerated(0.09) benign(0.028) TCGA-B8-A54H-01 11 1619161 1619161 C - KRTAP5-2 Frame_Shift_Del p.G107Afs*85 0.12 TCGA-B8-A54H-01 11 33079487 33079487 C A TCP11L1 Missense_Mutation p.P147H 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-B8-A54H-01 11 4936279 4936279 C T OR51G2 Missense_Mutation p.M205I 0.05 deleterious(0.02) benign(0.142) TCGA-B8-A54H-01 11 56344881 56344881 G A OR5M10 Missense_Mutation p.A106V 0.30 tolerated(0.05) benign(0.371) TCGA-B8-A54H-01 11 65387859 65387859 C - PCNXL3 Frame_Shift_Del p.P687Lfs*2 0.19 TCGA-B8-A54H-01 11 71712707 71712707 T C IL18BP Intron 0.25 TCGA-B8-A54H-01 12 107486579 107486579 C T CRY1 Intron 0.33 TCGA-B8-A54H-01 12 110565210 110565210 A G IFT81 Missense_Mutation p.M9V 0.22 tolerated(1) benign(0) TCGA-B8-A54H-01 12 123829864 123829864 T - SBNO1 Frame_Shift_Del p.N164Mfs*3 0.17 TCGA-B8-A54H-01 12 21014016 21014016 G T SLCO1B3 Missense_Mutation p.C142F 0.23 deleterious(0) probably_damaging(1) TCGA-B8-A54H-01 12 26592199 26592199 T C ITPR2 Missense_Mutation p.I2168M 0.26 deleterious(0.03) possibly_damaging(0.824) TCGA-B8-A54H-01 12 4771777 4771780 GATA - NDUFA9 Frame_Shift_Del p.R212Sfs*31 0.10 TCGA-B8-A54H-01 12 48543193 48543193 G A ASB8 Missense_Mutation p.P275S 0.10 tolerated(0.14) probably_damaging(0.992) TCGA-B8-A54H-01 12 52867328 52867328 C T KRT6C Missense_Mutation p.G65E 0.26 deleterious(0) unknown(0) TCGA-B8-A54H-01 12 55846425 55846425 T C OR6C2 Missense_Mutation p.V143A 0.21 deleterious_low_confidence(0) benign(0.26) TCGA-B8-A54H-01 12 56566219 56566219 A C SMARCC2 Missense_Mutation p.L609R 0.34 deleterious(0) probably_damaging(0.928) TCGA-B8-A54H-01 12 56571878 56571878 C G SMARCC2 Splice_Site p.X437_splice 0.21 TCGA-B8-A54H-01 12 65612349 65612349 A C LEMD3 Missense_Mutation p.S549R 0.26 tolerated(0.21) benign(0.008) TCGA-B8-A54H-01 13 111932916 111932916 C T ARHGEF7 Silent p.C560C 0.26 TCGA-B8-A54H-01 13 42882598 42882598 A - AKAP11 Frame_Shift_Del p.I1710* 0.23 TCGA-B8-A54H-01 13 43918723 43918723 C A ENOX1 Missense_Mutation p.E329D 0.37 tolerated(0.1) benign(0.211) TCGA-B8-A54H-01 13 45148985 45148985 A G TSC22D1 Missense_Mutation p.V409A 0.05 deleterious(0) probably_damaging(0.986) TCGA-B8-A54H-01 14 19553809 19553809 G A POTEG Silent p.P131P 0.08 TCGA-B8-A54H-01 14 21679630 21679631 - T HNRNPC Frame_Shift_Ins p.D258Rfs*2 0.21 TCGA-B8-A54H-01 14 25102275 25102275 G A GZMB Intron 0.34 TCGA-B8-A54H-01 14 77722921 77722921 C G TMEM63C Missense_Mutation p.S758C 0.26 deleterious(0.03) possibly_damaging(0.572) TCGA-B8-A54H-01 15 49030486 49030486 T G CEP152 Missense_Mutation p.Q1698P 0.05 deleterious(0) probably_damaging(0.961) TCGA-B8-A54H-01 15 79045584 79045584 C T RP11-160C18.4 RNA 0.25 TCGA-B8-A54H-01 16 2051059 2051059 G A ZNF598 Missense_Mutation p.P383S 0.12 benign(0.004) TCGA-B8-A54H-01 16 30205992 30205992 G C SULT1A3 5'Flank 0.14 TCGA-B8-A54H-01 16 55543252 55543252 G T LPCAT2 Silent p.A53A 0.27 TCGA-B8-A54H-01 16 847716 847717 GT - CHTF18 Frame_Shift_Del p.V920Gfs*59 0.26 TCGA-B8-A54H-01 17 13504342 13504342 G A HS3ST3A1 Silent p.S35S 0.23 TCGA-B8-A54H-01 17 40176008 40176008 C T NKIRAS2 3'UTR 0.38 TCGA-B8-A54H-01 17 4881834 4881834 A G CAMTA2 Missense_Mutation p.L600P 0.23 deleterious(0) probably_damaging(0.999) TCGA-B8-A54H-01 17 53471854 53471854 T G MMD Missense_Mutation p.L186F 0.26 tolerated(0.23) benign(0.014) TCGA-B8-A54H-01 17 6684058 6684058 C T FBXO39 Missense_Mutation p.R291W 0.18 deleterious(0) probably_damaging(0.992) TCGA-B8-A54H-01 17 71027755 71027755 A T SLC39A11 Silent p.A82A 0.24 TCGA-B8-A54H-01 17 79993805 79993805 C G DCXR 3'UTR 0.27 TCGA-B8-A54H-01 17 80828233 80828240 GCCCTTTG CCCCCT TBCD Frame_Shift_Del p.K484Nfs*17 0.16 TCGA-B8-A54H-01 19 11143983 11143983 C G SMARCA4 Missense_Mutation p.D1188E 0.13 probably_damaging(0.999) TCGA-B8-A54H-01 19 40723245 40723245 G A TTC9B Silent p.Y153Y 0.06 TCGA-B8-A54H-01 19 53086218 53086218 A T ZNF701 Missense_Mutation p.E368D 0.23 tolerated(0.06) benign(0.147) TCGA-B8-A54H-01 19 55693070 55693070 G T PTPRH 3'UTR 0.08 TCGA-B8-A54H-01 1 157666938 157666938 C G FCRL3 Missense_Mutation p.R279P 0.33 tolerated(0.24) possibly_damaging(0.665) TCGA-B8-A54H-01 1 18809980 18809980 A G KLHDC7A 3'UTR 0.25 TCGA-B8-A54H-01 1 206905725 206905725 T A MAPKAPK2 Intron 0.15 TCGA-B8-A54H-01 1 213414133 213414133 T A RPS6KC1 Silent p.L438L 0.34 TCGA-B8-A54H-01 1 29520666 29520666 T C MECR Silent p.T330T 0.40 TCGA-B8-A54H-01 1 3753917 3753917 G C CEP104 Missense_Mutation p.S353C 0.17 deleterious(0.03) benign(0.02) TCGA-B8-A54H-01 1 41950309 41950309 G A EDN2 5'UTR 0.26 TCGA-B8-A54H-01 1 6648903 6648903 A C ZBTB48 Missense_Mutation p.Q590P 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-B8-A54H-01 20 36775220 36775220 G T TGM2 Missense_Mutation p.S253Y 0.17 tolerated(1) benign(0.004) TCGA-B8-A54H-01 20 43629937 43629937 C G STK4 Missense_Mutation p.Q364E 0.24 tolerated(0.77) benign(0.005) TCGA-B8-A54H-01 20 44641090 44641090 C A MMP9 Missense_Mutation p.A400E 0.24 deleterious(0) probably_damaging(0.976) TCGA-B8-A54H-01 22 19279219 19279219 C T CLTCL1 5'UTR 0.44 TCGA-B8-A54H-01 22 31302231 31302231 G T OSBP2 Missense_Mutation p.D886Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-B8-A54H-01 22 44332970 44332970 C T PNPLA3 Missense_Mutation p.S266L 0.24 tolerated(0.18) benign(0.025) TCGA-B8-A54H-01 2 113343809 113343809 C T CHCHD5 Missense_Mutation p.A59V 0.25 deleterious(0.01) possibly_damaging(0.87) TCGA-B8-A54H-01 2 136673822 136673822 G A DARS Silent p.V360V 0.10 TCGA-B8-A54H-01 2 179595913 179595913 C T TTN Missense_Mutation p.E5827K 0.05 TCGA-B8-A54H-01 2 182358140 182358140 C A ITGA4 Missense_Mutation p.F414L 0.12 tolerated(0.06) possibly_damaging(0.606) TCGA-B8-A54H-01 2 196661336 196661336 G T DNAH7 Silent p.A3493A 0.17 TCGA-B8-A54H-01 2 202547630 202547630 T G MPP4 Missense_Mutation p.Y195S 0.25 deleterious(0.02) benign(0.082) TCGA-B8-A54H-01 2 212589868 212589868 T A ERBB4 Missense_Mutation p.Y225F 0.23 tolerated(0.56) benign(0.007) TCGA-B8-A54H-01 2 32399148 32399148 T C SLC30A6 Missense_Mutation p.L36P 0.31 deleterious(0.02) possibly_damaging(0.771) TCGA-B8-A54H-01 3 10191540 10191540 T C VHL Missense_Mutation p.L178P 0.35 deleterious(0) probably_damaging(1) TCGA-B8-A54H-01 3 129009527 129009527 T G HMCES Silent p.P111P 0.26 TCGA-B8-A54H-01 4 106156032 106156033 AA - TET2 Frame_Shift_Del p.N312Yfs*18 0.14 TCGA-B8-A54H-01 5 141358382 141358382 C A RNF14 Missense_Mutation p.A274D 0.21 deleterious(0) probably_damaging(0.99) TCGA-B8-A54H-01 5 19747068 19747068 G C CDH18 Missense_Mutation p.P169R 0.05 deleterious(0) probably_damaging(1) TCGA-B8-A54H-01 5 38933023 38933023 C A OSMR Missense_Mutation p.A806D 0.28 deleterious(0.01) possibly_damaging(0.793) TCGA-B8-A54H-01 6 133097515 133097515 G A SLC18B1 Silent p.S283S 0.48 TCGA-B8-A54H-01 6 165848834 165848834 T - PDE10A Frame_Shift_Del p.K143Rfs*31 0.17 TCGA-B8-A54H-01 6 37611615 37611615 A C MDGA1 Missense_Mutation p.F836V 0.22 deleterious(0) probably_damaging(0.992) TCGA-B8-A54H-01 6 4133790 4133790 T C ECI2 Missense_Mutation p.Y69C 0.30 deleterious(0) probably_damaging(0.983) TCGA-B8-A54H-01 6 43307506 43307506 A T ZNF318 Missense_Mutation p.F1410L 0.22 probably_damaging(0.999) TCGA-B8-A54H-01 6 65612004 65612004 A T EYS Splice_Site p.X949_splice 0.22 TCGA-B8-A54H-01 6 74073549 74073549 G A KHDC3L Missense_Mutation p.R207H 0.13 tolerated(0.24) benign(0.05) TCGA-B8-A54H-01 7 107664552 107664552 C T LAMB4 Missense_Mutation p.D1740N 0.35 tolerated(0.13) benign(0.008) TCGA-B8-A54H-01 7 107696359 107696359 C T LAMB4 Missense_Mutation p.C1158Y 0.34 deleterious(0) probably_damaging(0.993) TCGA-B8-A54H-01 7 126086156 126086156 T - GRM8 Intron 0.17 TCGA-B8-A54H-01 7 149522197 149522197 C T SSPO RNA 0.09 TCGA-B8-A54H-01 8 18257524 18257524 A T NAT2 Missense_Mutation p.E4V 0.23 deleterious(0.03) benign(0.038) TCGA-B8-A54H-01 8 29990285 29990285 T G MBOAT4 Missense_Mutation p.K161T 0.24 tolerated(0.54) benign(0.012) TCGA-B8-A54H-01 8 64099607 64099607 A T YTHDF3 Missense_Mutation p.Q345H 0.07 tolerated(0.3) benign(0.387) TCGA-B8-A54H-01 8 68092158 68092159 - T CSPP1 Frame_Shift_Ins p.G1069Wfs*5 0.18 TCGA-B8-A54H-01 9 125048196 125048196 C T MRRF Intron 0.17 TCGA-B8-A54H-01 9 125512746 125512746 T A OR1L6 Missense_Mutation p.V207D 0.37 deleterious(0) probably_damaging(1) TCGA-B8-A54H-01 9 140099499 140099499 A C TMEM203 Missense_Mutation p.I123S 0.09 deleterious(0) possibly_damaging(0.649) TCGA-B8-A54H-01 9 34398325 34398325 G A FAM219A 3'UTR 0.24 TCGA-B8-A54H-01 X 108641857 108641857 A C GUCY2F Missense_Mutation p.D732E 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-B8-A54H-01 X 109764669 109764669 G T TDGF1P3 RNA 0.24 TCGA-B8-A54H-01 X 123556396 123556396 C T TENM1 Silent p.E1399E 0.30 TCGA-B8-A54H-01 X 21393009 21393009 C T CNKSR2 5'UTR 0.06 TCGA-B8-A54H-01 X 40547773 40547773 G T MED14 Missense_Mutation p.L664M 0.26 tolerated(0.31) benign(0.005) TCGA-B8-A54H-01 X 49646761 49646761 G A USP27X 3'UTR 0.28 TCGA-B8-A54H-01 X 53310738 53310738 C - IQSEC2 Intron 0.17 TCGA-B8-A54I-01 10 12206477 12206477 C T SEC61A2 3'UTR 0.08 TCGA-B8-A54I-01 10 13330408 13330408 T C PHYH Silent p.P210P 0.12 TCGA-B8-A54I-01 10 46914628 46914628 T A RP11-38L15.8 RNA 0.20 TCGA-B8-A54I-01 10 97923507 97923507 T C ZNF518A RNA 0.05 TCGA-B8-A54I-01 11 123886941 123886941 C A OR10G4 Silent p.I220I 0.06 TCGA-B8-A54I-01 11 18738484 18738484 A T IGSF22 Missense_Mutation p.V346E 0.15 deleterious(0) probably_damaging(0.919) TCGA-B8-A54I-01 11 22297668 22297668 G A ANO5 Missense_Mutation p.D815N 0.28 tolerated(0.13) benign(0.006) TCGA-B8-A54I-01 11 61048460 61048460 C T VWCE Silent p.V345V 0.21 TCGA-B8-A54I-01 11 66457707 66457707 A T SPTBN2 Silent p.A1871A 0.14 TCGA-B8-A54I-01 11 71809351 71809351 A G LAMTOR1 Missense_Mutation p.F126S 0.11 tolerated(0.3) benign(0.007) TCGA-B8-A54I-01 12 113754762 113754762 T C SLC8B1 Missense_Mutation p.N283D 0.12 tolerated(0.25) benign(0.015) TCGA-B8-A54I-01 12 118463571 118463571 G - RFC5 Frame_Shift_Del p.G201Efs*2 0.23 TCGA-B8-A54I-01 12 123706315 123706315 C G MPHOSPH9 Missense_Mutation p.S7T 0.14 tolerated_low_confidence(0.67) benign(0.002) TCGA-B8-A54I-01 12 31256872 31256872 G C DDX11 Missense_Mutation p.V940L 0.17 deleterious_low_confidence(0) benign(0.097) TCGA-B8-A54I-01 12 6085317 6085317 G C VWF Missense_Mutation p.A2466G 0.14 deleterious(0) benign(0.02) TCGA-B8-A54I-01 14 38680040 38680040 T A SSTR1 3'UTR 0.17 TCGA-B8-A54I-01 14 93990358 93990358 C T UNC79 Silent p.C134C 0.06 TCGA-B8-A54I-01 14 94545454 94545454 A T DDX24 Missense_Mutation p.F212Y 0.11 deleterious(0.04) probably_damaging(0.993) TCGA-B8-A54I-01 15 50785094 50785094 C A USP8 Missense_Mutation p.Q811K 0.11 tolerated(0.52) benign(0.046) TCGA-B8-A54I-01 15 58889560 58889560 A C ADAM10 3'UTR 0.17 TCGA-B8-A54I-01 17 11895942 11895942 A C ZNF18 Missense_Mutation p.W69G 0.22 deleterious(0) probably_damaging(1) TCGA-B8-A54I-01 17 17788031 17788031 T - TOM1L2 Frame_Shift_Del p.I140Yfs*5 0.15 TCGA-B8-A54I-01 17 26680759 26680762 AGTA - POLDIP2 Frame_Shift_Del p.Y132Ifs*4 0.17 TCGA-B8-A54I-01 17 79514205 79514205 G A C17orf70 Nonsense_Mutation p.Q635* 0.16 TCGA-B8-A54I-01 17 79514206 79514206 C T C17orf70 Silent p.E634E 0.16 TCGA-B8-A54I-01 18 67687881 67687881 C G RTTN Missense_Mutation p.L2041F 0.20 deleterious(0.01) possibly_damaging(0.885) TCGA-B8-A54I-01 19 11283688 11283688 C T KANK2 Missense_Mutation p.R735Q 0.27 tolerated(0.14) probably_damaging(0.996) TCGA-B8-A54I-01 19 11941170 11941170 A G ZNF440 Missense_Mutation p.R26G 0.17 deleterious(0) benign(0.318) TCGA-B8-A54I-01 19 12984871 12984871 C T MAST1 Silent p.G1300G 0.18 TCGA-B8-A54I-01 19 15571883 15571883 G A RASAL3 Silent p.V198V 0.18 TCGA-B8-A54I-01 19 16612183 16612183 A T C19orf44 Missense_Mutation p.R194W 0.16 deleterious(0) probably_damaging(0.936) TCGA-B8-A54I-01 19 19407851 19407851 G A SUGP1 Missense_Mutation p.P397L 0.13 deleterious(0) probably_damaging(0.94) TCGA-B8-A54I-01 19 54844923 54844923 G C LILRA4 Missense_Mutation p.P474A 0.23 tolerated(0.22) benign(0.112) TCGA-B8-A54I-01 1 111773365 111773365 A T CHI3L2 Silent p.G24G 0.10 TCGA-B8-A54I-01 1 155649204 155649204 G A YY1AP1 Silent p.L179L 0.07 TCGA-B8-A54I-01 1 156552154 156552154 G A TTC24 Missense_Mutation p.G280R 0.14 deleterious(0) probably_damaging(1) TCGA-B8-A54I-01 1 201926499 201926499 T G TIMM17A Missense_Mutation p.N39K 0.16 deleterious(0) probably_damaging(0.997) TCGA-B8-A54I-01 1 225607136 225607136 G T LBR Missense_Mutation p.Q157K 0.13 tolerated(0.63) benign(0.035) TCGA-B8-A54I-01 1 24128901 24128901 G C HMGCL 3'UTR 0.15 TCGA-B8-A54I-01 20 17608188 17608188 C A RRBP1 Silent p.L530L 0.30 TCGA-B8-A54I-01 20 17608189 17608189 A T RRBP1 Missense_Mutation p.L530Q 0.30 deleterious(0) possibly_damaging(0.883) TCGA-B8-A54I-01 20 2464662 2464662 G C ZNF343 Missense_Mutation p.H315Q 0.13 deleterious(0.01) possibly_damaging(0.868) TCGA-B8-A54I-01 20 61981699 61981699 A T CHRNA4 Missense_Mutation p.L355Q 0.24 deleterious(0) probably_damaging(1) TCGA-B8-A54I-01 22 19707403 19707404 - T SEPT5 Frame_Shift_Ins p.S77Qfs*3 0.12 TCGA-B8-A54I-01 22 35719103 35719103 T - TOM1 Frame_Shift_Del p.V100Gfs*35 0.18 TCGA-B8-A54I-01 22 36054826 36054826 A G APOL6 Missense_Mutation p.K72R 0.13 tolerated(0.34) benign(0.267) TCGA-B8-A54I-01 22 40807477 40807477 G A MKL1 Missense_Mutation p.L905F 0.12 deleterious(0.01) probably_damaging(0.979) TCGA-B8-A54I-01 2 111875290 111875290 T C ACOXL Missense_Mutation p.I547T 0.17 deleterious(0.04) benign(0.043) TCGA-B8-A54I-01 2 149806447 149806447 C T KIF5C Missense_Mutation p.A270V 0.22 tolerated(0.09) benign(0.171) TCGA-B8-A54I-01 2 157436261 157436261 G T GPD2 Missense_Mutation p.L673F 0.11 tolerated(0.28) benign(0.078) TCGA-B8-A54I-01 2 170145562 170145562 T A LRP2 Missense_Mutation p.N339I 0.24 possibly_damaging(0.713) TCGA-B8-A54I-01 2 192255021 192255021 T C MYO1B Silent p.C595C 0.04 TCGA-B8-A54I-01 2 198175359 198175359 A G ANKRD44 5'UTR 0.16 TCGA-B8-A54I-01 2 209292976 209292976 G A PTH2R Silent p.L42L 0.05 TCGA-B8-A54I-01 2 37215836 37215836 C T HEATR5B Missense_Mutation p.G1955E 0.27 deleterious(0.01) possibly_damaging(0.908) TCGA-B8-A54I-01 2 69002289 69002289 C T ARHGAP25 Intron 0.10 TCGA-B8-A54I-01 3 112644015 112644015 T - CD200R1 Frame_Shift_Del p.K265Nfs*14 0.12 TCGA-B8-A54I-01 3 121981170 121981170 G A CASR Missense_Mutation p.A430T 0.22 deleterious(0) probably_damaging(1) TCGA-B8-A54I-01 3 126708484 126708484 A T PLXNA1 Nonsense_Mutation p.K350* 0.30 TCGA-B8-A54I-01 3 135864086 135864086 C T PPP2R3A 3'UTR 0.04 TCGA-B8-A54I-01 3 169539818 169539818 T C LRRIQ4 Silent p.L37L 0.04 TCGA-B8-A54I-01 3 195702695 195702695 G A SDHAP1 RNA 0.09 TCGA-B8-A54I-01 3 196669325 196669325 A G NCBP2 Missense_Mutation p.L17P 0.05 tolerated(0.1) possibly_damaging(0.872) TCGA-B8-A54I-01 3 44541043 44541043 T G ZNF852 Missense_Mutation p.K409T 0.16 deleterious(0) probably_damaging(0.99) TCGA-B8-A54I-01 3 45436165 45436165 A T LARS2 Missense_Mutation p.I74F 0.15 tolerated(0.1) benign(0.328) TCGA-B8-A54I-01 3 48451948 48451948 G A PLXNB1 Silent p.A1812A 0.08 TCGA-B8-A54I-01 4 22389746 22389746 C A GPR125 Missense_Mutation p.R1183L 0.14 deleterious(0) probably_damaging(0.977) TCGA-B8-A54I-01 5 126774210 126774210 T A MEGF10 Missense_Mutation p.D728E 0.22 deleterious(0.01) possibly_damaging(0.64) TCGA-B8-A54I-01 5 1318404 1318404 C G CLPTM1L 3'UTR 0.20 TCGA-B8-A54I-01 5 1318414 1318414 C G CLPTM1L 3'UTR 0.18 TCGA-B8-A54I-01 5 1318437 1318437 C G CLPTM1L 3'UTR 0.15 TCGA-B8-A54I-01 5 140228026 140228026 T G PCDHA9 5'UTR 0.11 TCGA-B8-A54I-01 5 140750584 140750584 A G PCDHGB3 Missense_Mutation p.H208R 0.13 deleterious(0) probably_damaging(0.99) TCGA-B8-A54I-01 5 36207304 36207304 G A NADK2 Silent p.L308L 0.18 TCGA-B8-A54I-01 5 63665705 63665705 T G RNF180 3'UTR 0.35 TCGA-B8-A54I-01 6 106649909 106649909 C A ATG5 Missense_Mutation p.G210V 0.08 deleterious(0) probably_damaging(0.996) TCGA-B8-A54I-01 6 106649910 106649910 C G ATG5 Missense_Mutation p.G210R 0.08 deleterious(0) probably_damaging(0.986) TCGA-B8-A54I-01 7 128492900 128492900 A G FLNC Missense_Mutation p.K2008R 0.20 tolerated(0.5) probably_damaging(0.99) TCGA-B8-A54I-01 7 129913015 129913015 A C CPA2 Missense_Mutation p.K162Q 0.31 deleterious(0.02) probably_damaging(1) TCGA-B8-A54I-01 7 155493529 155493529 A T RBM33 Missense_Mutation p.E210D 0.20 tolerated(1) benign(0.043) TCGA-B8-A54I-01 8 107371813 107371813 G T OXR1 5'UTR 0.08 TCGA-B8-A54I-01 8 118819466 118819466 T C EXT1 Missense_Mutation p.I625V 0.15 deleterious(0.04) benign(0.078) TCGA-B8-A54I-01 8 42163895 42163895 A G IKBKB Missense_Mutation p.K171R 0.06 deleterious(0.02) possibly_damaging(0.893) TCGA-B8-A54I-01 8 70744720 70744720 A G SLCO5A1 Silent p.C63C 0.31 TCGA-B8-A54I-01 9 127572346 127572346 C T OLFML2A Silent p.D538D 0.44 TCGA-B8-A54I-01 9 33271175 33271175 A C CHMP5 Missense_Mutation p.K114T 0.22 deleterious(0.02) probably_damaging(0.976) TCGA-B8-A54I-01 9 77257399 77257399 A G RORB Missense_Mutation p.Q102R 0.08 tolerated(0.19) benign(0.031) TCGA-B8-A54I-01 X 135488081 135488081 C T GPR112 Missense_Mutation p.P2962L 0.30 deleterious(0) probably_damaging(0.975) TCGA-B8-A54J-01 11 58170290 58170290 A G OR5B3 Missense_Mutation p.I198T 0.20 deleterious_low_confidence(0) benign(0.115) TCGA-B8-A54J-01 11 64564616 64564616 G T MAP4K2 Missense_Mutation p.P442H 0.25 deleterious(0.03) benign(0.159) TCGA-B8-A54J-01 12 10218182 10218182 C T CLEC9A Missense_Mutation p.T226M 0.21 tolerated(0.14) benign(0.058) TCGA-B8-A54J-01 12 121248665 121248665 A T SPPL3 Missense_Mutation p.S16R 0.17 deleterious(0) possibly_damaging(0.594) TCGA-B8-A54J-01 12 121248666 121248666 C T SPPL3 Missense_Mutation p.S16N 0.17 deleterious(0) possibly_damaging(0.574) TCGA-B8-A54J-01 12 52306885 52306885 G C ACVRL1 Missense_Mutation p.D22H 0.31 tolerated(0.08) benign(0.173) TCGA-B8-A54J-01 12 80933698 80933698 C - PTPRQ Frame_Shift_Del p.I1040Lfs*17 0.20 TCGA-B8-A54J-01 12 88505512 88505512 C T CEP290 Missense_Mutation p.A726T 0.18 benign(0.199) TCGA-B8-A54J-01 13 110814580 110814580 A G COL4A1 Silent p.L1487L 0.36 TCGA-B8-A54J-01 14 36960405 36960405 C T SFTA3 Splice_Site p.X45_splice 0.06 TCGA-B8-A54J-01 14 53010243 53010243 C A TXNDC16 Silent p.G11G 0.22 TCGA-B8-A54J-01 14 62200934 62200934 A T HIF1A Missense_Mutation p.Q344L 0.19 deleterious(0) probably_damaging(0.976) TCGA-B8-A54J-01 14 68220471 68220471 C G ZFYVE26 Missense_Mutation p.G2381R 0.11 deleterious(0) probably_damaging(0.996) TCGA-B8-A54J-01 15 37109938 37109938 G T CSNK1A1P1 RNA 0.14 TCGA-B8-A54J-01 15 68473620 68473620 T C PIAS1 Missense_Mutation p.Y518H 0.26 tolerated(0.05) probably_damaging(0.994) TCGA-B8-A54J-01 15 84685214 84685214 C A ADAMTSL3 Silent p.T1412T 0.17 TCGA-B8-A54J-01 16 30381006 30381006 C T TBC1D10B Missense_Mutation p.A167T 0.27 deleterious_low_confidence(0) benign(0.102) TCGA-B8-A54J-01 16 89292007 89292007 T G ZNF778 Missense_Mutation p.S97A 0.21 tolerated(0.19) benign(0) TCGA-B8-A54J-01 17 15641659 15641659 A G TBC1D26 Silent p.L115L 0.28 TCGA-B8-A54J-01 17 1628736 1628736 G A WDR81 Silent p.P161P 0.13 TCGA-B8-A54J-01 17 2186046 2186046 G C SMG6 Silent p.R852R 0.10 TCGA-B8-A54J-01 17 37099916 37099916 A G FBXO47 Silent p.I289I 0.29 TCGA-B8-A54J-01 17 4881819 4881819 A G CAMTA2 Missense_Mutation p.V605A 0.23 deleterious(0) probably_damaging(0.989) TCGA-B8-A54J-01 17 58007518 58007518 T C RPS6KB1 Silent p.F190F 0.18 TCGA-B8-A54J-01 17 60749482 60749482 G A MRC2 Missense_Mutation p.S477N 0.24 deleterious(0.03) benign(0.014) TCGA-B8-A54J-01 17 73493252 73493252 T A KIAA0195 Missense_Mutation p.L1127Q 0.31 deleterious(0) probably_damaging(0.974) TCGA-B8-A54J-01 17 79875511 79875511 T A SIRT7 Missense_Mutation p.T106S 0.27 deleterious(0.04) possibly_damaging(0.601) TCGA-B8-A54J-01 19 18255467 18255467 G T MAST3 Missense_Mutation p.A897S 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-B8-A54J-01 19 35449647 35449647 C T ZNF792 Missense_Mutation p.C371Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-B8-A54J-01 19 35530058 35530058 G T SCN1B 3'Flank 0.21 TCGA-B8-A54J-01 19 41726545 41726545 G A AXL Silent p.T30T 0.24 TCGA-B8-A54J-01 19 49658149 49658149 C T HRC Missense_Mutation p.E116K 0.22 tolerated(0.06) benign(0.001) TCGA-B8-A54J-01 19 50463908 50463908 C A SIGLEC11 Missense_Mutation p.A121S 0.07 deleterious(0) probably_damaging(0.964) TCGA-B8-A54J-01 19 50519366 50519366 G T VRK3 Missense_Mutation p.F18L 0.23 deleterious(0) probably_damaging(0.999) TCGA-B8-A54J-01 19 55350925 55350925 C T KIR2DS4 Missense_Mutation p.T138M 0.12 tolerated_low_confidence(0.1) possibly_damaging(0.854) TCGA-B8-A54J-01 1 1453137 1453137 G A ATAD3A Silent p.E190E 0.09 TCGA-B8-A54J-01 1 171484872 171484872 G A PRRC2C Splice_Site p.X132_splice 0.19 TCGA-B8-A54J-01 1 179095586 179095586 C A ABL2 Missense_Mutation p.G205W 0.12 deleterious(0) probably_damaging(1) TCGA-B8-A54J-01 1 212238355 212238355 G T DTL Missense_Mutation p.G208V 0.20 deleterious(0.01) benign(0.318) TCGA-B8-A54J-01 1 27614297 27614297 A G WDTC1 Missense_Mutation p.T142A 0.20 tolerated(0.11) possibly_damaging(0.69) TCGA-B8-A54J-01 1 39888090 39888090 G A MACF1 Silent p.Q3225Q 0.26 TCGA-B8-A54J-01 1 39888091 39888091 C T MACF1 Nonsense_Mutation p.Q3226* 0.26 TCGA-B8-A54J-01 1 44436316 44436316 G A DPH2 Missense_Mutation p.A66T 0.24 deleterious(0.05) possibly_damaging(0.673) TCGA-B8-A54J-01 20 3005135 3005135 A C PTPRA Silent p.I494I 0.06 TCGA-B8-A54J-01 20 42969911 42969911 C T R3HDML Silent p.L113L 0.10 TCGA-B8-A54J-01 20 48522205 48522205 T C SPATA2 Missense_Mutation p.N505S 0.10 tolerated(0.28) benign(0.004) TCGA-B8-A54J-01 20 61490780 61490780 G C TCFL5 Silent p.S310S 0.32 TCGA-B8-A54J-01 22 20800804 20800804 C T KLHL22 Missense_Mutation p.A489T 0.23 deleterious(0.04) probably_damaging(0.948) TCGA-B8-A54J-01 22 30886051 30886051 G C SEC14L4 3'UTR 0.14 TCGA-B8-A54J-01 22 46684424 46684424 C G TTC38 Missense_Mutation p.L341V 0.26 tolerated(0.09) benign(0.087) TCGA-B8-A54J-01 22 46759038 46759038 G T CELSR1 3'UTR 0.23 TCGA-B8-A54J-01 2 17836534 17836534 G A VSNL1 Missense_Mutation p.R150Q 0.17 deleterious(0.02) probably_damaging(0.958) TCGA-B8-A54J-01 2 17836535 17836535 A G VSNL1 Silent p.R150R 0.17 TCGA-B8-A54J-01 2 208842260 208842260 T A PLEKHM3 Nonsense_Mutation p.R221* 0.14 TCGA-B8-A54J-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.16 TCGA-B8-A54J-01 2 64685607 64685607 C A LGALSL 3'UTR 0.21 TCGA-B8-A54J-01 2 64685609 64685609 G C LGALSL 3'UTR 0.20 TCGA-B8-A54J-01 3 121605197 121605197 T A EAF2 Missense_Mutation p.L249M 0.19 deleterious(0) probably_damaging(0.997) TCGA-B8-A54J-01 3 126722281 126722281 C G PLXNA1 Missense_Mutation p.H496D 0.15 tolerated(0.09) benign(0.013) TCGA-B8-A54J-01 3 128631473 128631473 T A ACAD9 3'UTR 0.24 TCGA-B8-A54J-01 3 186383812 186383812 T C HRG 5'UTR 0.09 TCGA-B8-A54J-01 3 52712611 52712622 AATCTACACATT - PBRM1 Splice_Site p.X47_splice 0.26 TCGA-B8-A54J-01 5 112178190 112178190 C G APC Missense_Mutation p.S2300C 0.19 probably_damaging(1) TCGA-B8-A54J-01 5 137497533 137497533 T G BRD8 Missense_Mutation p.Q734P 0.22 deleterious(0) probably_damaging(0.995) TCGA-B8-A54J-01 5 159835053 159835053 T G SLU7 Missense_Mutation p.N281T 0.14 tolerated(0.05) probably_damaging(0.997) TCGA-B8-A54J-01 5 176794791 176794791 C T RGS14 Missense_Mutation p.P235L 0.44 tolerated(0.25) benign(0.002) TCGA-B8-A54J-01 5 177573235 177573235 C A RMND5B Missense_Mutation p.A272D 0.44 deleterious(0) probably_damaging(0.985) TCGA-B8-A54J-01 5 179042560 179042562 GAT AA HNRNPH1 Frame_Shift_Del p.Q445Hfs*2 0.26 TCGA-B8-A54J-01 5 65350424 65350424 C G ERBB2IP Missense_Mutation p.S1093C 0.08 tolerated(0.14) benign(0.345) TCGA-B8-A54J-01 6 112408481 112408481 G A TUBE1 Silent p.C18C 0.20 TCGA-B8-A54J-01 6 117718163 117718163 G C ROS1 Missense_Mutation p.L232V 0.22 deleterious(0) probably_damaging(0.999) TCGA-B8-A54J-01 6 90573604 90573604 G A CASP8AP2 RNA 0.28 TCGA-B8-A54J-01 7 116502627 116502627 C T CAPZA2 5'UTR 0.18 TCGA-B8-A54J-01 7 131163414 131163414 T A MKLN1 Silent p.S688S 0.32 TCGA-B8-A54J-01 7 138554431 138554431 C T KIAA1549 Missense_Mutation p.G1543E 0.14 deleterious(0) probably_damaging(1) TCGA-B8-A54J-01 7 143509908 143509908 A C RP11-61L23.2 RNA 0.14 TCGA-B8-A54J-01 7 73602100 73602100 C T EIF4H Silent p.V73V 0.19 TCGA-B8-A54J-01 7 83591033 83591033 A G SEMA3A Missense_Mutation p.I657T 0.18 tolerated(1) benign(0.031) TCGA-B8-A54J-01 8 18079775 18079775 T A NAT1 Missense_Mutation p.H135Q 0.20 tolerated(0.47) benign(0.011) TCGA-B8-A54J-01 8 54628556 54628556 C T ATP6V1H Missense_Mutation p.E474K 0.08 tolerated(0.09) benign(0.026) TCGA-B8-A54J-01 9 135798844 135798844 G A TSC1 Silent p.V133V 0.26 TCGA-B8-A54J-01 9 14776157 14776157 T G FREM1 Missense_Mutation p.E1496A 0.20 tolerated(0.09) benign(0.15) TCGA-B8-A54J-01 X 107821311 107821311 A C COL4A5 Missense_Mutation p.N217H 0.52 unknown(0) TCGA-B8-A54J-01 X 1409368 1409368 A G CSF2RA Silent p.Q204Q 0.23 TCGA-B8-A54J-01 X 70521672 70521672 C - ITGB1BP2 Frame_Shift_Del p.R6Vfs*43 0.36 TCGA-B8-A54J-01 Y 2733153 2733153 G T RPS4Y1 Missense_Mutation p.G186V 0.41 deleterious(0.01) probably_damaging(0.989) TCGA-B8-A54K-01 10 99197012 99197012 C G EXOSC1 Missense_Mutation p.Q139H 0.41 tolerated(0.68) benign(0.002) TCGA-B8-A54K-01 12 104133194 104133194 A G STAB2 Missense_Mutation p.E1901G 0.05 tolerated(0.22) benign(0) TCGA-B8-A54K-01 12 51640351 51640351 G C DAZAP2 3'Flank 0.38 TCGA-B8-A54K-01 12 6560010 6560010 A C CD27 Intron 0.51 TCGA-B8-A54K-01 12 9262913 9262913 A T A2M Silent p.I167I 0.29 TCGA-B8-A54K-01 13 114113681 114113681 G A DCUN1D2 Silent p.L216L 0.40 TCGA-B8-A54K-01 13 53216601 53216601 G A HNRNPA1L2 5'UTR 0.08 TCGA-B8-A54K-01 15 27572168 27572168 C A GABRG3 Nonsense_Mutation p.Y161* 0.25 TCGA-B8-A54K-01 15 77907659 77907659 G A LINGO1 Missense_Mutation p.T197M 0.06 deleterious(0) probably_damaging(0.997) TCGA-B8-A54K-01 16 1307063 1307063 G T TPSD1 Missense_Mutation p.V174L 0.07 tolerated(0.29) benign(0.033) TCGA-B8-A54K-01 16 89986884 89986884 G T MC1R 3'UTR 0.34 TCGA-B8-A54K-01 17 42239279 42239279 C T C17orf53 Silent p.F641F 0.45 TCGA-B8-A54K-01 17 56809957 56809957 T A RAD51C Intron 0.08 TCGA-B8-A54K-01 17 8167562 8167562 C G PFAS Silent p.V608V 0.37 TCGA-B8-A54K-01 18 3277822 3277822 G T MYL12B Missense_Mutation p.D136Y 0.42 deleterious(0) possibly_damaging(0.453) TCGA-B8-A54K-01 18 3879253 3879253 C T DLGAP1 Silent p.P272P 0.38 TCGA-B8-A54K-01 1 11862937 11862937 C T MTHFR Splice_Site p.X79_splice 0.44 TCGA-B8-A54K-01 20 3765943 3765943 G T CENPB Silent p.T396T 0.50 TCGA-B8-A54K-01 20 56185255 56185255 C T ZBP1 Missense_Mutation p.G348D 0.38 tolerated(0.29) benign(0) TCGA-B8-A54K-01 21 39775438 39775438 G T ERG Nonsense_Mutation p.Y201* 0.45 TCGA-B8-A54K-01 22 24237634 24237634 T G AP000350.4 Silent p.P57P 0.20 TCGA-B8-A54K-01 2 110053595 110053595 T A SH3RF3 Silent p.I607I 0.40 TCGA-B8-A54K-01 2 203168300 203168300 T - NOP58 3'UTR 0.28 TCGA-B8-A54K-01 2 45879061 45879061 C T PRKCE 5'UTR 0.27 TCGA-B8-A54K-01 3 126270932 126270932 G A C3orf22 Silent p.P41P 0.05 TCGA-B8-A54K-01 3 48450849 48450849 T - PLXNB1 Frame_Shift_Del p.N1992Tfs*76 0.27 TCGA-B8-A54K-01 4 169341455 169341455 C T DDX60L Missense_Mutation p.G824D 0.43 deleterious(0) probably_damaging(1) TCGA-B8-A54K-01 5 53752073 53752073 C A HSPB3 3'UTR 0.44 TCGA-B8-A54K-01 6 32030054 32030054 G A TNXB Missense_Mutation p.P2350S 0.09 benign(0.124) TCGA-B8-A54K-01 6 90497656 90497656 G A MDN1 Silent p.L417L 0.12 TCGA-B8-A54K-01 7 122759170 122759170 T C SLC13A1 Missense_Mutation p.T493A 0.07 deleterious(0) possibly_damaging(0.816) TCGA-B8-A54K-01 8 145663865 145663865 G T TONSL Missense_Mutation p.L548I 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-B8-A54K-01 8 17419533 17419533 C G SLC7A2 Missense_Mutation p.L569V 0.33 tolerated(0.75) benign(0.198) TCGA-B8-A54K-01 X 20185788 20185788 T A RPS6KA3 Missense_Mutation p.R507S 0.82 tolerated(0.09) possibly_damaging(0.648) TCGA-B8-A54K-01 X 49597136 49597136 G A PAGE4 Missense_Mutation p.V59I 0.80 tolerated(0.05) benign(0.258) TCGA-B8-A7U6-01 10 124050658 124050658 T A BTBD16 Missense_Mutation p.L180Q 0.12 deleterious(0.01) probably_damaging(0.979) TCGA-B8-A7U6-01 10 70333411 70333411 C A TET1 Missense_Mutation p.P439Q 0.13 tolerated(0.18) benign(0.011) TCGA-B8-A7U6-01 10 88705161 88705161 G T MMRN2 Nonsense_Mutation p.C122* 0.10 TCGA-B8-A7U6-01 11 121495936 121495936 A G SORL1 Missense_Mutation p.N2105S 0.09 tolerated(0.62) benign(0.001) TCGA-B8-A7U6-01 11 12315414 12315414 C T MICALCL Silent p.L146L 0.24 TCGA-B8-A7U6-01 11 12315416 12315416 A T MICALCL Silent p.L146L 0.24 TCGA-B8-A7U6-01 11 34905030 34905030 T C APIP Silent p.V161V 0.09 TCGA-B8-A7U6-01 11 44151661 44151661 A G EXT2 Silent p.Q415Q 0.27 TCGA-B8-A7U6-01 11 59857832 59857832 G C MS4A2 Missense_Mutation p.M70I 0.10 tolerated(0.14) benign(0.001) TCGA-B8-A7U6-01 11 67351232 67351232 G A GSTP1 5'UTR 0.27 TCGA-B8-A7U6-01 12 100502261 100502261 T C UHRF1BP1L Missense_Mutation p.K37R 0.26 deleterious(0.01) benign(0.098) TCGA-B8-A7U6-01 12 102796208 102796208 A G IGF1 3'UTR 0.05 TCGA-B8-A7U6-01 12 109893948 109893948 T C KCTD10 Missense_Mutation p.Y233C 0.12 deleterious(0) probably_damaging(0.989) TCGA-B8-A7U6-01 12 123472780 123472780 C T PITPNM2 Splice_Site p.X999_splice 0.09 TCGA-B8-A7U6-01 12 133234473 133234473 T G POLE Missense_Mutation p.Q1120P 0.08 tolerated(0.22) benign(0.433) TCGA-B8-A7U6-01 12 48866644 48866644 T G ANP32D Missense_Mutation p.L66R 0.06 deleterious(0) probably_damaging(0.999) TCGA-B8-A7U6-01 12 54333291 54333291 C G HOXC13 Missense_Mutation p.P201A 0.20 tolerated(0.35) benign(0.15) TCGA-B8-A7U6-01 12 72014086 72014086 T G ZFC3H1 Missense_Mutation p.K1585T 0.20 tolerated(0.3) benign(0.03) TCGA-B8-A7U6-01 13 100617942 100617942 A G ZIC5 Missense_Mutation p.S561P 0.06 deleterious(0) probably_damaging(0.998) TCGA-B8-A7U6-01 13 102029277 102029277 T - NALCN Frame_Shift_Del p.N169Ifs*3 0.15 TCGA-B8-A7U6-01 13 53608592 53608592 C T OLFM4 Missense_Mutation p.T105I 0.07 tolerated(0.46) benign(0.013) TCGA-B8-A7U6-01 14 50069123 50069123 T A LRR1 Missense_Mutation p.F73L 0.18 deleterious(0.01) possibly_damaging(0.847) TCGA-B8-A7U6-01 14 81251251 81251251 G C CEP128 Missense_Mutation p.I733M 0.05 tolerated(0.05) probably_damaging(0.984) TCGA-B8-A7U6-01 15 43712884 43712887 AGTT - TP53BP1 Frame_Shift_Del p.N1433Cfs*49 0.17 TCGA-B8-A7U6-01 15 44581275 44581275 C A CASC4 Silent p.L16L 0.20 TCGA-B8-A7U6-01 15 74468260 74468260 C T ISLR Missense_Mutation p.T354I 0.10 tolerated(0.26) benign(0.002) TCGA-B8-A7U6-01 16 2030506 2030506 C T NOXO1 Missense_Mutation p.G93D 0.18 tolerated(0.11) probably_damaging(1) TCGA-B8-A7U6-01 16 70893984 70893984 T G HYDIN Missense_Mutation p.E4039A 0.21 possibly_damaging(0.801) TCGA-B8-A7U6-01 17 26712171 26712171 T A SARM1 Missense_Mutation p.Y469N 0.21 deleterious(0) probably_damaging(1) TCGA-B8-A7U6-01 17 40468890 40468890 G A STAT3 Missense_Mutation p.P725L 0.09 deleterious(0) benign(0.171) TCGA-B8-A7U6-01 17 7138868 7138868 G A PHF23 3'UTR 0.44 TCGA-B8-A7U6-01 17 80399716 80399716 A T HEXDC Silent p.G431G 0.28 TCGA-B8-A7U6-01 18 21485523 21485523 C - LAMA3 Frame_Shift_Del p.L2219* 0.14 TCGA-B8-A7U6-01 18 56247606 56247606 T G ALPK2 Missense_Mutation p.E134D 0.19 tolerated(0.11) benign(0.078) TCGA-B8-A7U6-01 19 17001270 17001270 C T F2RL3 Silent p.N332N 0.25 TCGA-B8-A7U6-01 19 19747836 19747836 G T GMIP Missense_Mutation p.S376Y 0.14 deleterious(0.01) possibly_damaging(0.517) TCGA-B8-A7U6-01 19 21131914 21131914 A C ZNF85 Missense_Mutation p.R198S 0.21 tolerated(0.42) possibly_damaging(0.752) TCGA-B8-A7U6-01 19 45412560 45412560 C T APOE 3'UTR 0.15 TCGA-B8-A7U6-01 19 47423850 47423850 A T ARHGAP35 Missense_Mutation p.I640L 0.22 deleterious(0.04) probably_damaging(0.984) TCGA-B8-A7U6-01 19 56701308 56701308 C T ZSCAN5B Missense_Mutation p.R459H 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-B8-A7U6-01 19 5941673 5941673 T C RANBP3 Missense_Mutation p.E122G 0.05 deleterious(0.03) benign(0.049) TCGA-B8-A7U6-01 1 176104187 176104187 A G RFWD2 Silent p.D309D 0.03 TCGA-B8-A7U6-01 1 3697742 3697742 C G LRRC47 Silent p.R554R 0.26 TCGA-B8-A7U6-01 1 52961108 52961108 A T ZCCHC11 Missense_Mutation p.F419L 0.03 deleterious(0.02) probably_damaging(0.92) TCGA-B8-A7U6-01 1 54610385 54610385 C T CDCP2 Missense_Mutation p.V61M 0.07 deleterious(0.02) probably_damaging(1) TCGA-B8-A7U6-01 20 18037350 18037350 T C OVOL2 Missense_Mutation p.D91G 0.13 tolerated(0.4) benign(0) TCGA-B8-A7U6-01 22 36623752 36623752 C T APOL2 Missense_Mutation p.A238T 0.06 deleterious(0.04) benign(0.192) TCGA-B8-A7U6-01 22 41751770 41751770 G C ZC3H7B Missense_Mutation p.K726N 0.21 deleterious(0) possibly_damaging(0.844) TCGA-B8-A7U6-01 2 100203626 100203626 T C AFF3 Missense_Mutation p.N886D 0.23 deleterious(0.03) benign(0.062) TCGA-B8-A7U6-01 2 130737527 130737540 CCTCCAGCCGGGCT - RAB6C 5'UTR 0.11 TCGA-B8-A7U6-01 2 136701044 136701044 G A DARS Silent p.N109N 0.15 TCGA-B8-A7U6-01 2 179571293 179571293 G A TTN Nonsense_Mutation p.R9770* 0.21 TCGA-B8-A7U6-01 2 179582483 179582483 A G TTN Missense_Mutation p.L8373P 0.32 TCGA-B8-A7U6-01 2 179604679 179604679 G A TTN Silent p.V4427V 0.19 TCGA-B8-A7U6-01 2 71043471 71043471 C A CLEC4F Missense_Mutation p.A348S 0.23 tolerated(0.09) benign(0.346) TCGA-B8-A7U6-01 2 95541391 95541391 A G TEKT4 Missense_Mutation p.K332R 0.04 tolerated(0.57) benign(0.03) TCGA-B8-A7U6-01 2 96542201 96542201 T A ANKRD36C Missense_Mutation p.N203Y 0.16 tolerated(0.06) benign(0.001) TCGA-B8-A7U6-01 3 130290105 130290105 G C COL6A6 Missense_Mutation p.D949H 0.05 deleterious(0.03) possibly_damaging(0.54) TCGA-B8-A7U6-01 3 156877906 156877906 G T CCNL1 5'UTR 0.11 TCGA-B8-A7U6-01 3 57651856 57651856 G C DENND6A Nonsense_Mutation p.Y142* 0.37 TCGA-B8-A7U6-01 4 151504574 151504574 T - MAB21L2 Frame_Shift_Del p.F132Sfs*20 0.15 TCGA-B8-A7U6-01 4 31144473 31144473 C T PCDH7 3'Flank 0.19 TCGA-B8-A7U6-01 4 3430173 3430173 A T RGS12 Intron 0.04 TCGA-B8-A7U6-01 4 48027125 48027130 TTGGTG - NIPAL1 In_Frame_Del p.W30_C31del 0.20 TCGA-B8-A7U6-01 4 72205002 72205002 C G SLC4A4 Intron 0.21 TCGA-B8-A7U6-01 4 94006225 94006225 G C GRID2 Missense_Mutation p.L108F 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-B8-A7U6-01 5 132151591 132151591 T - SOWAHA 3'UTR 0.15 TCGA-B8-A7U6-01 5 134077150 134077150 A G CAMLG Missense_Mutation p.I190M 0.22 deleterious(0) possibly_damaging(0.894) TCGA-B8-A7U6-01 5 134910264 134910264 G A CXCL14 Silent p.R106R 0.24 TCGA-B8-A7U6-01 5 140751787 140751787 T C PCDHGB3 Missense_Mutation p.V609A 0.08 deleterious(0) possibly_damaging(0.459) TCGA-B8-A7U6-01 5 2748687 2748687 C T IRX2 Missense_Mutation p.G379S 0.05 tolerated(0.66) probably_damaging(0.998) TCGA-B8-A7U6-01 6 101166054 101166054 G C ASCC3 Missense_Mutation p.T659R 0.23 tolerated(1) benign(0) TCGA-B8-A7U6-01 6 155139716 155139716 A T SCAF8 Missense_Mutation p.K542M 0.18 deleterious(0) probably_damaging(0.994) TCGA-B8-A7U6-01 6 161771035 161771035 C T PARK2 3'UTR 0.18 TCGA-B8-A7U6-01 6 27420720 27420720 T C ZNF184 Silent p.K206K 0.22 TCGA-B8-A7U6-01 6 50011394 50011394 G T DEFB112 Missense_Mutation p.T79K 0.25 tolerated(0.12) possibly_damaging(0.728) TCGA-B8-A7U6-01 7 1022885 1022885 G A CYP2W1 Missense_Mutation p.G13E 0.08 tolerated(1) unknown(0) TCGA-B8-A7U6-01 7 139415898 139415898 C T HIPK2 Silent p.L312L 0.25 TCGA-B8-A7U6-01 8 102217866 102217866 G A ZNF706 5'Flank 0.53 TCGA-B8-A7U6-01 8 116631984 116631984 G A TRPS1 Missense_Mutation p.P114L 0.27 deleterious_low_confidence(0.03) benign(0.007) TCGA-B8-A7U6-01 8 2807786 2807786 C A CSMD1 Missense_Mutation p.K3427N 0.08 benign(0.034) TCGA-B8-A7U6-01 8 48766677 48766677 G C PRKDC Missense_Mutation p.P2286R 0.21 probably_damaging(0.943) TCGA-B8-A7U6-01 8 88885912 88885912 G A DCAF4L2 Silent p.G96G 0.08 TCGA-B8-A7U6-01 9 107602723 107602723 G - ABCA1 Frame_Shift_Del p.T298Pfs*20 0.10 TCGA-B8-A7U6-01 9 140470538 140470538 T C DPH7 Silent p.E123E 0.14 TCGA-B8-A7U6-01 9 77377172 77377172 C G TRPM6 Missense_Mutation p.W1472S 0.05 tolerated_low_confidence(0.18) benign(0.027) TCGA-B8-A7U6-01 X 106871752 106871752 C T PRPS1 5'UTR 0.07 TCGA-B8-A7U6-01 X 27840654 27840654 T C MAGEB10 3'UTR 0.03 TCGA-B8-A7U6-01 X 37312934 37312934 C A PRRG1 3'UTR 0.24 TCGA-B8-A7U6-01 X 53224140 53224140 C A KDM5C Silent p.A1137A 0.28 TCGA-B8-A7U6-01 X 70328450 70328450 G A IL2RG Missense_Mutation p.R285W 0.24 deleterious(0.02) benign(0.308) TCGA-B8-A7U6-01 X 99942164 99942164 A C SYTL4 Missense_Mutation p.F362V 0.04 tolerated(0.07) probably_damaging(0.998) TCGA-B8-A8YJ-01 10 73047412 73047412 G A UNC5B Missense_Mutation p.R264Q 0.07 deleterious(0) possibly_damaging(0.801) TCGA-B8-A8YJ-01 10 76789397 76789397 C A KAT6B Silent p.S1605S 0.07 TCGA-B8-A8YJ-01 11 117342689 117342689 C T DSCAML1 Missense_Mutation p.V1010M 0.06 deleterious(0.05) probably_damaging(0.921) TCGA-B8-A8YJ-01 12 133331341 133331341 C T ANKLE2 Missense_Mutation p.R187K 0.05 tolerated(1) benign(0.003) TCGA-B8-A8YJ-01 12 66747339 66747339 G T GRIP1 Missense_Mutation p.T954N 0.04 tolerated(0.05) possibly_damaging(0.662) TCGA-B8-A8YJ-01 14 51223815 51223815 G A NIN Silent p.Y1311Y 0.06 TCGA-B8-A8YJ-01 14 78227432 78227432 T A C14orf178 Missense_Mutation p.I16N 0.08 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-B8-A8YJ-01 14 78227433 78227433 C T C14orf178 Silent p.I16I 0.08 TCGA-B8-A8YJ-01 16 511463 511463 C A RAB11FIP3 Missense_Mutation p.D258E 0.07 tolerated(0.14) possibly_damaging(0.716) TCGA-B8-A8YJ-01 17 55183528 55183528 A G AKAP1 Missense_Mutation p.S235G 0.07 tolerated(0.34) benign(0.001) TCGA-B8-A8YJ-01 17 76570976 76570976 G A DNAH17 Missense_Mutation p.T55M 0.07 possibly_damaging(0.555) TCGA-B8-A8YJ-01 17 80044985 80044985 G A FASN Missense_Mutation p.T1123M 0.05 tolerated(0.28) benign(0.001) TCGA-B8-A8YJ-01 18 44260009 44260009 C T ST8SIA5 Missense_Mutation p.C376Y 0.07 probably_damaging(0.993) TCGA-B8-A8YJ-01 19 14034391 14034391 C G CC2D1A Missense_Mutation p.Q599E 0.04 deleterious(0) benign(0.017) TCGA-B8-A8YJ-01 19 19767545 19767545 C A ATP13A1 Missense_Mutation p.C336F 0.06 deleterious(0) probably_damaging(0.999) TCGA-B8-A8YJ-01 19 38959719 38959719 C A RYR1 Silent p.G1165G 0.07 TCGA-B8-A8YJ-01 19 43922035 43922035 A T TEX101 Missense_Mutation p.T151S 0.06 tolerated(0.91) benign(0.025) TCGA-B8-A8YJ-01 19 44030442 44030442 G C ETHE1 Missense_Mutation p.P96A 0.05 tolerated(0.05) benign(0.018) TCGA-B8-A8YJ-01 1 111730259 111730259 G A DENND2D Nonsense_Mutation p.Q462* 0.05 TCGA-B8-A8YJ-01 1 149916850 149916850 C T OTUD7B Missense_Mutation p.E480K 0.04 tolerated(1) benign(0.036) TCGA-B8-A8YJ-01 1 201046057 201046057 G A CACNA1S Silent p.S606S 0.07 TCGA-B8-A8YJ-01 1 25735263 25735263 G A RHCE Silent p.F82F 0.04 TCGA-B8-A8YJ-01 1 50610859 50610859 C A ELAVL4 Missense_Mutation p.D97E 0.05 tolerated(0.08) benign(0.416) TCGA-B8-A8YJ-01 1 53573986 53573986 G A SLC1A7 Intron 0.38 TCGA-B8-A8YJ-01 1 93163452 93163452 C A EVI5 Missense_Mutation p.G288C 0.08 deleterious(0) probably_damaging(0.995) TCGA-B8-A8YJ-01 20 36676759 36676759 T A RPRD1B Missense_Mutation p.D97E 0.04 tolerated(0.23) benign(0.116) TCGA-B8-A8YJ-01 20 44521889 44521889 T G CTSA Missense_Mutation p.Y229D 0.09 deleterious(0.01) benign(0.365) TCGA-B8-A8YJ-01 21 10907039 10907039 G T TPTE Missense_Mutation p.L508I 0.05 deleterious(0) possibly_damaging(0.812) TCGA-B8-A8YJ-01 21 31692092 31692092 C T KRTAP26-1 Missense_Mutation p.V88M 0.05 deleterious(0) benign(0.282) TCGA-B8-A8YJ-01 2 135745518 135745518 C T MAP3K19 Nonsense_Mutation p.W308* 0.05 TCGA-B8-A8YJ-01 2 201437889 201437889 T G SGOL2 Missense_Mutation p.D940E 0.11 deleterious(0.01) possibly_damaging(0.574) TCGA-B8-A8YJ-01 2 212543819 212543819 C G ERBB4 Missense_Mutation p.S527T 0.03 tolerated(0.7) benign(0.005) TCGA-B8-A8YJ-01 2 74643410 74643410 A T C2orf81 Intron 0.19 TCGA-B8-A8YJ-01 3 40557612 40557612 A G ZNF620 Missense_Mutation p.N176S 0.05 tolerated(1) benign(0.004) TCGA-B8-A8YJ-01 3 47163616 47163616 T C SETD2 Missense_Mutation p.D837G 0.07 tolerated_low_confidence(0.1) benign(0.242) TCGA-B8-A8YJ-01 3 62423856 62423856 C T CADPS Missense_Mutation p.V1234M 0.05 deleterious(0.02) benign(0.43) TCGA-B8-A8YJ-01 5 177633754 177633754 A C HNRNPAB Silent p.R134R 0.10 TCGA-B8-A8YJ-01 6 111694452 111694452 C T REV3L Silent p.Q1702Q 0.05 TCGA-B8-A8YJ-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.05 TCGA-B8-A8YJ-01 7 123104936 123104936 T C IQUB Missense_Mutation p.H570R 0.06 deleterious(0.04) benign(0.15) TCGA-B8-A8YJ-01 8 67342508 67342508 A C RRS1 3'UTR 0.05 TCGA-B8-A8YJ-01 9 84603903 84603903 A G SPATA31D1 Missense_Mutation p.N57S 0.06 tolerated(0.79) benign(0.001) TCGA-B8-A8YJ-01 X 102613131 102613131 C T WBP5 3'UTR 0.03 TCGA-B8-A8YJ-01 X 118717161 118717161 A C UBE2A Missense_Mutation p.K134N 0.08 deleterious(0.02) possibly_damaging(0.553) TCGA-B8-A8YJ-01 X 127186068 127186068 C T ACTRT1 Missense_Mutation p.G40R 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-B8-A8YJ-01 X 17157043 17157043 G T REPS2 Missense_Mutation p.V625L 0.03 deleterious(0) probably_damaging(0.997) TCGA-B8-A8YJ-01 X 3238073 3238073 C T MXRA5 Missense_Mutation p.V1885I 0.04 tolerated(1) benign(0.006) TCGA-B8-A8YJ-01 X 75004905 75004905 C T MAGEE2 5'UTR 0.02 TCGA-B8-A8YJ-01 X 80370414 80370414 C T HMGN5 Missense_Mutation p.D195N 0.07 tolerated(0.67) unknown(0) TCGA-BP-4161-01 10 115962900 115962900 A T TDRD1 Nonsense_Mutation p.R256* 0.25 TCGA-BP-4161-01 10 116880014 116880014 C A ATRNL1 Missense_Mutation p.T120N 0.38 deleterious(0) probably_damaging(0.999) TCGA-BP-4161-01 10 55568846 55568846 G A PCDH15 Missense_Mutation p.A589V 0.26 deleterious_low_confidence(0) unknown(0) TCGA-BP-4161-01 10 61831858 61831858 T - ANK3 Frame_Shift_Del p.V2928Sfs*8 0.22 TCGA-BP-4161-01 10 89725042 89725042 A G PTEN Splice_Site p.X343_splice 0.05 TCGA-BP-4161-01 11 5617916 5617916 G C TRIM6 5'UTR 0.29 TCGA-BP-4161-01 11 8704319 8704319 G A RPL27A 5'UTR 0.39 TCGA-BP-4161-01 12 116549250 116549250 G T MED13L Silent p.I126I 0.17 TCGA-BP-4161-01 12 18762521 18762521 G A PIK3C2G Silent p.E1339E 0.26 TCGA-BP-4161-01 12 21032479 21032479 G T SLCO1B3 Silent p.S415S 0.31 TCGA-BP-4161-01 12 48369167 48369167 C A COL2A1 Missense_Mutation p.E1273D 0.34 unknown(0) TCGA-BP-4161-01 12 49690246 49690246 A G PRPH Missense_Mutation p.E213G 0.28 deleterious(0.01) benign(0.143) TCGA-BP-4161-01 12 50037386 50037386 C T FMNL3 3'UTR 0.23 TCGA-BP-4161-01 12 51690950 51690950 T A BIN2 Splice_Site p.X201_splice 0.38 TCGA-BP-4161-01 12 8083142 8083142 G T SLC2A3 Missense_Mutation p.P203T 0.35 deleterious(0.01) possibly_damaging(0.904) TCGA-BP-4161-01 13 41515228 41515228 G A ELF1 Missense_Mutation p.A362V 0.30 tolerated(0.51) benign(0.002) TCGA-BP-4161-01 16 29096088 29096088 T C RRN3P2 Intron 0.10 TCGA-BP-4161-01 17 36499492 36499492 C T GPR179 Missense_Mutation p.A61T 0.43 tolerated(0.1) benign(0.032) TCGA-BP-4161-01 17 4442824 4442824 T A MYBBP1A Silent p.P1291P 0.26 TCGA-BP-4161-01 17 7415174 7415174 G T POLR2A Silent p.L1382L 0.24 TCGA-BP-4161-01 18 44069072 44069072 T G LOXHD1 Missense_Mutation p.D860A 0.29 deleterious(0.02) probably_damaging(0.965) TCGA-BP-4161-01 19 15559003 15559003 C T WIZ Missense_Mutation p.G39E 0.17 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-BP-4161-01 19 15565475 15565475 G A RASAL3 Missense_Mutation p.R651C 0.42 tolerated(0.18) benign(0.002) TCGA-BP-4161-01 19 37975441 37975441 T C ZNF570 Missense_Mutation p.V306A 0.08 tolerated(0.19) probably_damaging(0.994) TCGA-BP-4161-01 19 43969649 43969649 G A LYPD3 Silent p.R25R 0.35 TCGA-BP-4161-01 19 44469419 44469419 C T ZNF221 Silent p.F81F 0.31 TCGA-BP-4161-01 19 464235 464235 G A ODF3L2 Missense_Mutation p.A160V 0.09 deleterious(0) probably_damaging(0.993) TCGA-BP-4161-01 19 49379159 49379159 G A PPP1R15A Missense_Mutation p.A652T 0.27 tolerated(0.41) unknown(0) TCGA-BP-4161-01 19 8201371 8201371 T G FBN3 Missense_Mutation p.T416P 0.25 tolerated(0.4) benign(0.33) TCGA-BP-4161-01 19 8998753 8998753 G T MUC16 Silent p.T13610T 0.34 TCGA-BP-4161-01 1 11982556 11982556 G A KIAA2013 Intron 0.38 TCGA-BP-4161-01 1 144931265 144931265 G A PDE4DIP Intron 0.14 TCGA-BP-4161-01 1 151259628 151259628 A T ZNF687 Missense_Mutation p.E287D 0.23 tolerated(0.07) benign(0.036) TCGA-BP-4161-01 1 159683413 159683413 A G CRP Missense_Mutation p.Y193H 0.06 tolerated(0.13) benign(0.147) TCGA-BP-4161-01 1 160607007 160607007 C T SLAMF1 Missense_Mutation p.R130H 0.19 tolerated(0.92) benign(0.002) TCGA-BP-4161-01 1 216052254 216052254 C T USH2A Missense_Mutation p.G2804R 0.16 probably_damaging(0.992) TCGA-BP-4161-01 1 247752125 247752125 G A OR2G2 Missense_Mutation p.G155E 0.20 deleterious(0) probably_damaging(0.998) TCGA-BP-4161-01 1 26138019 26138019 T C SEPN1 Missense_Mutation p.I362T 0.29 deleterious(0) benign(0.164) TCGA-BP-4161-01 1 93987691 93987691 C T FNBP1L Missense_Mutation p.R65W 0.45 deleterious(0) probably_damaging(0.962) TCGA-BP-4161-01 20 20243669 20243669 C T C20orf26 Missense_Mutation p.R800W 0.26 deleterious(0.01) possibly_damaging(0.857) TCGA-BP-4161-01 21 44527581 44527581 G T U2AF1 Silent p.I8I 0.17 TCGA-BP-4161-01 22 24829496 24829496 A - ADORA2A Frame_Shift_Del p.N42Tfs*75 0.36 TCGA-BP-4161-01 22 26114290 26114290 G T ADRBK2 Missense_Mutation p.R578L 0.23 deleterious(0.04) benign(0.047) TCGA-BP-4161-01 22 41794473 41794473 G A TEF 3'UTR 0.27 TCGA-BP-4161-01 2 132508382 132508382 C T C2orf27A 5'UTR 0.22 TCGA-BP-4161-01 2 160194250 160194250 C A BAZ2B Nonsense_Mutation p.E1830* 0.14 TCGA-BP-4161-01 2 169995117 169995117 A C LRP2 Silent p.P4496P 0.23 TCGA-BP-4161-01 2 179457765 179457765 C A TTN Missense_Mutation p.C19694F 0.18 TCGA-BP-4161-01 2 27439991 27439991 G A ATRAID 3'UTR 0.30 TCGA-BP-4161-01 2 38829719 38829719 T C HNRNPLL Missense_Mutation p.E12G 0.10 tolerated_low_confidence(0.18) benign(0) TCGA-BP-4161-01 2 46605874 46605874 G A EPAS1 Missense_Mutation p.D508N 0.30 deleterious(0.02) probably_damaging(0.987) TCGA-BP-4161-01 2 97883055 97883055 G - ANKRD36 Frame_Shift_Del p.V1267Ffs*4 0.21 TCGA-BP-4161-01 3 101476746 101476746 T C CEP97 Silent p.D432D 0.29 TCGA-BP-4161-01 3 47079180 47079181 - G SETD2 Frame_Shift_Ins p.T2443Nfs*3 0.31 TCGA-BP-4161-01 3 52582081 52582081 A - PBRM1 Frame_Shift_Del p.*1583N 0.25 TCGA-BP-4161-01 3 52702514 52702514 C T PBRM1 Silent p.K128K 0.27 TCGA-BP-4161-01 4 106601237 106601237 G C ARHGEF38 3'UTR 0.37 TCGA-BP-4161-01 4 125631530 125631530 C G ANKRD50 Missense_Mutation p.S46T 0.25 tolerated_low_confidence(0.62) benign(0) TCGA-BP-4161-01 4 169433483 169433483 G C PALLD Missense_Mutation p.K276N 0.43 deleterious(0) probably_damaging(0.998) TCGA-BP-4161-01 4 71346891 71346891 A T MUC7 Missense_Mutation p.N144Y 0.32 deleterious(0) probably_damaging(0.979) TCGA-BP-4161-01 4 76897076 76897076 C T SDAD1 Splice_Site p.X159_splice 0.30 TCGA-BP-4161-01 4 77969321 77969321 T - CCNI 3'UTR 0.20 TCGA-BP-4161-01 5 140797646 140797646 C T PCDHGB7 Missense_Mutation p.H74Y 0.36 tolerated(1) possibly_damaging(0.663) TCGA-BP-4161-01 5 140869478 140869478 G T PCDHGC5 Missense_Mutation p.G224V 0.36 deleterious(0) probably_damaging(1) TCGA-BP-4161-01 5 149505045 149505045 G A PDGFRB Silent p.D590D 0.27 TCGA-BP-4161-01 5 149505046 149505046 T G PDGFRB Missense_Mutation p.D590A 0.26 deleterious(0) probably_damaging(0.924) TCGA-BP-4161-01 5 179668101 179668101 C T MAPK9 Missense_Mutation p.R309Q 0.35 deleterious(0) probably_damaging(1) TCGA-BP-4161-01 6 17624932 17624932 G A NUP153 Missense_Mutation p.S1345L 0.34 tolerated(0.07) benign(0.184) TCGA-BP-4161-01 6 17783914 17783914 C T KIF13A Missense_Mutation p.M1169I 0.25 deleterious(0.02) benign(0.04) TCGA-BP-4161-01 6 30917885 30917885 C G DPCR1 Silent p.A548A 0.32 TCGA-BP-4161-01 6 42626515 42626515 G T UBR2 Missense_Mutation p.Q1065H 0.26 deleterious(0) possibly_damaging(0.827) TCGA-BP-4161-01 6 42858203 42858203 C T C6orf226 3'UTR 0.19 TCGA-BP-4161-01 6 73001656 73001656 C G RIMS1 Missense_Mutation p.P1253A 0.30 tolerated(0.09) benign(0.196) TCGA-BP-4161-01 7 100238672 100238672 G A TFR2 Silent p.L71L 0.32 TCGA-BP-4161-01 7 100349547 100349547 A G ZAN Missense_Mutation p.I607V 0.04 benign(0.031) TCGA-BP-4161-01 7 2255571 2255571 C T MAD1L1 Silent p.G291G 0.37 TCGA-BP-4161-01 7 40134281 40134281 C - CDK13 Frame_Shift_Del p.A1414Vfs*129 0.25 TCGA-BP-4161-01 7 82582155 82582155 A G PCLO Missense_Mutation p.L2705P 0.36 unknown(0) TCGA-BP-4161-01 8 41456755 41456755 C T AGPAT6 Missense_Mutation p.P33S 0.03 deleterious(0.03) probably_damaging(0.992) TCGA-BP-4161-01 8 86044062 86044062 G T LRRCC1 Missense_Mutation p.A612S 0.08 tolerated(0.11) benign(0.057) TCGA-BP-4161-01 8 99101674 99101674 A - C8orf47 Frame_Shift_Del p.G145Efs*8 0.43 TCGA-BP-4161-01 9 128284008 128284008 G T MAPKAP1 Intron 0.30 TCGA-BP-4161-01 9 17309093 17309093 A G CNTLN Missense_Mutation p.K395R 0.11 tolerated(0.18) probably_damaging(0.998) TCGA-BP-4161-01 9 2039524 2039524 G A SMARCA2 Missense_Mutation p.M138I 0.32 benign(0.001) TCGA-BP-4161-01 9 35310690 35310690 G T UNC13B Nonsense_Mutation p.E330* 0.28 TCGA-BP-4161-01 9 38571981 38571981 C G ANKRD18A 3'UTR 0.20 TCGA-BP-4161-01 X 101098158 101098158 G A NXF5 5'UTR 0.06 TCGA-BP-4161-01 X 40573155 40573155 T C MED14 Missense_Mutation p.K176R 0.64 tolerated(0.72) benign(0.055) TCGA-BP-4162-01 10 115489084 115489084 A T CASP7 Missense_Mutation p.R266W 0.24 deleterious(0) probably_damaging(1) TCGA-BP-4162-01 10 26377305 26377305 G T MYO3A Silent p.L511L 0.30 TCGA-BP-4162-01 11 56185258 56185258 A G OR5R1 Missense_Mutation p.Y151H 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-BP-4162-01 11 9225842 9225842 G A DENND5A Missense_Mutation p.A105V 0.27 deleterious(0.03) benign(0.139) TCGA-BP-4162-01 12 112650409 112650409 G T HECTD4 Missense_Mutation p.P2358H 0.30 probably_damaging(0.992) TCGA-BP-4162-01 12 120582805 120582805 A T GCN1L1 Missense_Mutation p.F1693I 0.43 probably_damaging(0.996) TCGA-BP-4162-01 12 2022187 2022187 A G CACNA2D4 Splice_Site p.X142_splice 0.18 TCGA-BP-4162-01 12 25347862 25347862 G C CASC1 Intron 0.21 TCGA-BP-4162-01 12 56436231 56436231 G A RPS26 Missense_Mutation p.G9D 0.24 deleterious(0.05) probably_damaging(0.982) TCGA-BP-4162-01 14 90754790 90754793 CACT - NRDE2 Frame_Shift_Del p.S976Ffs*15 0.40 TCGA-BP-4162-01 14 93652729 93652729 C T RP11-371E8.4 Silent p.L37L 0.26 TCGA-BP-4162-01 15 68582267 68582267 T C FEM1B Silent p.L191L 0.21 TCGA-BP-4162-01 17 27438794 27438794 T C MYO18A Missense_Mutation p.T896A 0.23 tolerated(0.34) benign(0.008) TCGA-BP-4162-01 17 28386632 28386632 G T EFCAB5 Missense_Mutation p.D884Y 0.23 deleterious(0) probably_damaging(0.986) TCGA-BP-4162-01 17 34257122 34257122 C G RDM1 Missense_Mutation p.K78N 0.24 deleterious(0.03) possibly_damaging(0.694) TCGA-BP-4162-01 19 16472527 16472527 A T EPS15L1 Intron 0.25 TCGA-BP-4162-01 19 38380084 38380084 G A WDR87 Silent p.G1370G 0.24 TCGA-BP-4162-01 19 43358131 43358131 C T PSG10P RNA 0.19 TCGA-BP-4162-01 19 52469415 52469415 C G ZNF350 Silent p.V97V 0.20 TCGA-BP-4162-01 19 52918713 52918715 ACC - ZNF528 In_Frame_Del p.N203_Q204delinsK 0.25 TCGA-BP-4162-01 19 57646742 57646742 A T ZIM3 Missense_Mutation p.D321E 0.22 tolerated(0.81) benign(0.011) TCGA-BP-4162-01 19 58601748 58601748 A C ZSCAN18 Missense_Mutation p.W19G 0.18 deleterious_low_confidence(0) benign(0.03) TCGA-BP-4162-01 1 112247019 112247019 G - RAP1A Frame_Shift_Del p.G127Afs*8 0.21 TCGA-BP-4162-01 1 155014062 155014062 G C DCST1 Missense_Mutation p.E241Q 0.22 deleterious(0.02) possibly_damaging(0.772) TCGA-BP-4162-01 1 207222973 207222977 GCAAA - YOD1 Frame_Shift_Del p.L146Cfs*17 0.22 TCGA-BP-4162-01 1 237791209 237791209 G A RYR2 Missense_Mutation p.R2090Q 0.24 probably_damaging(0.999) TCGA-BP-4162-01 1 248458511 248458511 C A OR2T12 Missense_Mutation p.V124F 0.16 deleterious(0) possibly_damaging(0.891) TCGA-BP-4162-01 1 249106452 249106452 C T SH3BP5L Missense_Mutation p.G277R 0.17 tolerated(0.29) unknown(0) TCGA-BP-4162-01 1 45120522 45120522 G A TMEM53 Silent p.V181V 0.09 TCGA-BP-4162-01 1 981443 981443 C G AGRN Missense_Mutation p.T927S 0.22 tolerated(0.28) benign(0.292) TCGA-BP-4162-01 20 1184139 1184139 C T C20orf202 5'UTR 0.27 TCGA-BP-4162-01 20 30898421 30898421 G T KIF3B Missense_Mutation p.A281S 0.23 tolerated(0.06) possibly_damaging(0.841) TCGA-BP-4162-01 2 173354250 173354250 C A ITGA6 Missense_Mutation p.T848K 0.17 tolerated(0.1) benign(0.007) TCGA-BP-4162-01 3 121417605 121417605 T C GOLGB1 Missense_Mutation p.R589G 0.26 benign(0.005) TCGA-BP-4162-01 3 13612493 13612493 G C FBLN2 Missense_Mutation p.G213A 0.43 tolerated(1) benign(0.003) TCGA-BP-4162-01 3 193049056 193049056 G A ATP13A5 Silent p.T439T 0.04 TCGA-BP-4162-01 3 44683830 44683830 G A ZNF197 Missense_Mutation p.C403Y 0.08 tolerated(0.06) probably_damaging(0.998) TCGA-BP-4162-01 3 46622816 46622816 A C TDGF1 3'UTR 0.39 TCGA-BP-4162-01 3 49373006 49373006 A C USP4 Missense_Mutation p.F42C 0.37 deleterious(0) probably_damaging(0.999) TCGA-BP-4162-01 5 132070046 132070063 CCCCTCATCTCATCCACA G KIF3A Frame_Shift_Del p.V39Nfs*6 0.26 TCGA-BP-4162-01 5 140080064 140080064 G T ZMAT2 Splice_Site p.X6_splice 0.02 TCGA-BP-4162-01 5 159545855 159545855 C T PWWP2A Missense_Mutation p.G181R 0.12 tolerated(0.28) possibly_damaging(0.613) TCGA-BP-4162-01 5 21751935 21751935 C A CDH12 Missense_Mutation p.D766Y 0.18 deleterious(0) probably_damaging(0.982) TCGA-BP-4162-01 6 25830753 25830753 T C SLC17A1 Silent p.K11K 0.19 TCGA-BP-4162-01 7 100841643 100841643 A G MOGAT3 Missense_Mutation p.L166P 0.09 deleterious(0.03) probably_damaging(0.953) TCGA-BP-4162-01 7 101923413 101923413 G T SH2B2 5'Flank 0.40 TCGA-BP-4162-01 7 102952754 102952754 T A PMPCB 3'UTR 0.12 TCGA-BP-4162-01 7 150710265 150710265 C T ATG9B 3'UTR 0.10 TCGA-BP-4162-01 7 151092874 151092874 G A WDR86 Silent p.V238V 0.12 TCGA-BP-4162-01 7 25218907 25218907 C T C7orf31 Silent p.R7R 0.06 TCGA-BP-4162-01 7 97937353 97937353 G A BAIAP2L1 Intron 0.22 TCGA-BP-4162-01 7 99145777 99145777 A T FAM200A Missense_Mutation p.I85N 0.16 deleterious(0) probably_damaging(0.994) TCGA-BP-4162-01 8 80831121 80831121 T C MRPS28 3'UTR 0.22 TCGA-BP-4162-01 X 100524198 100524198 G A TAF7L Missense_Mutation p.R458C 0.23 tolerated(0.2) benign(0.001) TCGA-BP-4162-01 X 153171715 153171715 G A AVPR2 Missense_Mutation p.R252Q 0.29 tolerated(0.64) benign(0.023) TCGA-BP-4162-01 X 49142437 49142437 T C PPP1R3F Missense_Mutation p.S429P 0.08 tolerated_low_confidence(0.23) benign(0.002) TCGA-BP-4162-01 X 54839919 54839919 A G MAGED2 Splice_Site p.X403_splice 0.22 TCGA-BP-4162-01 X 73524500 73524500 C T ZCCHC13 Silent p.C133C 0.12 TCGA-BP-4163-01 11 129754640 129754640 C T NFRKB Missense_Mutation p.D273N 0.08 deleterious(0.05) unknown(0) TCGA-BP-4163-01 11 3115035 3115035 G C OSBPL5 Missense_Mutation p.Q584E 0.10 tolerated(0.14) benign(0.1) TCGA-BP-4163-01 11 6023936 6023936 C G OR56A4 Missense_Mutation p.S148T 0.22 tolerated(0.06) benign(0.06) TCGA-BP-4163-01 11 65144051 65144051 C T SLC25A45 Missense_Mutation p.D232N 0.21 deleterious(0.01) possibly_damaging(0.561) TCGA-BP-4163-01 11 78147613 78147613 T C NARS2 3'UTR 0.26 TCGA-BP-4163-01 11 92577387 92577387 G T FAT3 Silent p.L3618L 0.27 TCGA-BP-4163-01 12 53448982 53448982 T G TENC1 Missense_Mutation p.S189A 0.45 deleterious(0.01) benign(0.015) TCGA-BP-4163-01 13 77700671 77700674 TAGA - MYCBP2 Frame_Shift_Del p.S2517Kfs*11 0.16 TCGA-BP-4163-01 14 58737146 58737146 G A PSMA3 Missense_Mutation p.V201I 0.32 tolerated(0.09) benign(0.015) TCGA-BP-4163-01 14 71571970 71571970 A T PCNX Silent p.G2038G 0.27 TCGA-BP-4163-01 15 101601457 101601457 G A LRRK1 Silent p.Q1587Q 0.33 TCGA-BP-4163-01 15 40707145 40707145 A T IVD Missense_Mutation p.D284V 0.25 deleterious(0) probably_damaging(0.969) TCGA-BP-4163-01 15 41065992 41065992 A T DNAJC17 Missense_Mutation p.L242Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-BP-4163-01 15 43818938 43818938 A G MAP1A Missense_Mutation p.K1756R 0.20 probably_damaging(0.997) TCGA-BP-4163-01 15 63555808 63555808 C T RAB8B Missense_Mutation p.S205L 0.26 tolerated_low_confidence(0.2) benign(0) TCGA-BP-4163-01 16 15501819 15501819 A G MPV17L Silent p.Q147Q 0.34 TCGA-BP-4163-01 16 50120249 50120249 T G HEATR3 Silent p.L499L 0.18 TCGA-BP-4163-01 16 72992626 72992626 C T ZFHX3 Silent p.E473E 0.20 TCGA-BP-4163-01 17 2966855 2966855 C T OR1D5 Missense_Mutation p.G16E 0.12 deleterious(0) probably_damaging(1) TCGA-BP-4163-01 17 38508302 38508302 C A RARA Missense_Mutation p.Q204K 0.18 tolerated(0.09) benign(0.001) TCGA-BP-4163-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.22 deleterious(0.01) possibly_damaging(0.655) TCGA-BP-4163-01 17 40721610 40721610 A G MLX Silent p.L208L 0.23 TCGA-BP-4163-01 17 41062994 41062995 - A G6PC Nonsense_Mutation p.Y209* 0.24 TCGA-BP-4163-01 17 61829787 61829787 G A CCDC47 Missense_Mutation p.P366S 0.29 tolerated(0.13) probably_damaging(0.988) TCGA-BP-4163-01 17 73258639 73258639 G C MRPS7 Missense_Mutation p.E49Q 0.20 tolerated(0.12) benign(0.153) TCGA-BP-4163-01 17 76496393 76496393 G A DNAH17-AS1 Missense_Mutation p.V109I 0.28 unknown(0) TCGA-BP-4163-01 18 11852138 11852138 G T CHMP1B 3'UTR 0.33 TCGA-BP-4163-01 19 18286140 18286140 G C IFI30 Missense_Mutation p.R112T 0.27 tolerated(0.22) benign(0.037) TCGA-BP-4163-01 19 49096055 49096055 C G SULT2B1 Silent p.T209T 0.13 TCGA-BP-4163-01 19 58101848 58101848 A C ZIK1 Missense_Mutation p.K223N 0.23 tolerated(0.16) benign(0.002) TCGA-BP-4163-01 1 115123970 115123970 T G BCAS2 Missense_Mutation p.T46P 0.25 tolerated(0.1) possibly_damaging(0.465) TCGA-BP-4163-01 1 120928587 120928587 T - FCGR1B Intron 0.13 TCGA-BP-4163-01 1 151732588 151732588 A T MRPL9 Missense_Mutation p.Y248N 0.27 deleterious(0.02) possibly_damaging(0.889) TCGA-BP-4163-01 1 197060067 197060067 C G ASPM Missense_Mutation p.R3183S 0.24 tolerated(0.15) possibly_damaging(0.515) TCGA-BP-4163-01 1 20810079 20810079 T C CAMK2N1 3'UTR 0.20 TCGA-BP-4163-01 1 44154664 44154664 G C KDM4A Missense_Mutation p.Q645H 0.25 deleterious(0) probably_damaging(0.948) TCGA-BP-4163-01 20 57567073 57567076 TAGG - NELFCD Splice_Site p.X428_splice 0.24 TCGA-BP-4163-01 22 32108234 32108234 C T PRR14L Missense_Mutation p.R1864Q 0.26 deleterious(0.04) possibly_damaging(0.744) TCGA-BP-4163-01 2 160623882 160623882 G A MARCH7 3'UTR 0.23 TCGA-BP-4163-01 2 20153652 20153652 T C WDR35 Missense_Mutation p.K459R 0.22 tolerated(0.07) benign(0.009) TCGA-BP-4163-01 2 2328885 2328885 T C MYT1L Intron 0.14 TCGA-BP-4163-01 3 10005822 10005822 T C EMC3 Silent p.E239E 0.24 TCGA-BP-4163-01 3 133362056 133362056 A T TOPBP1 Missense_Mutation p.L670H 0.38 tolerated(0.69) benign(0.021) TCGA-BP-4163-01 3 161221212 161221212 C A OTOL1 Missense_Mutation p.P306T 0.16 tolerated(0.11) possibly_damaging(0.87) TCGA-BP-4163-01 3 193120483 193120483 A G ATP13A4 Silent p.S1183S 0.09 TCGA-BP-4163-01 3 51708346 51708346 T A TEX264 Missense_Mutation p.L9Q 0.32 deleterious(0) unknown(0) TCGA-BP-4163-01 3 52439876 52439876 G T BAP1 Nonsense_Mutation p.S279* 0.36 TCGA-BP-4163-01 4 104061981 104061981 G A CENPE Missense_Mutation p.T1915I 0.20 benign(0.002) TCGA-BP-4163-01 4 76440718 76440721 AGTT - THAP6 Frame_Shift_Del p.L20Kfs*3 0.24 TCGA-BP-4163-01 5 137228267 137228267 T G PKD2L2 Missense_Mutation p.F78V 0.22 deleterious(0.01) possibly_damaging(0.831) TCGA-BP-4163-01 5 178459395 178459395 A G ZNF879 Missense_Mutation p.Y149C 0.46 tolerated(0.19) benign(0) TCGA-BP-4163-01 5 37022178 37022178 C G NIPBL Missense_Mutation p.A1785G 0.26 deleterious(0) benign(0.233) TCGA-BP-4163-01 5 37226660 37226660 C G C5orf42 Missense_Mutation p.Q679H 0.26 tolerated(0.1) benign(0.052) TCGA-BP-4163-01 6 159184435 159184435 C A SYTL3 Silent p.G539G 0.25 TCGA-BP-4163-01 7 100065183 100065183 G T TSC22D4 Missense_Mutation p.Q324K 0.26 deleterious(0.02) benign(0.027) TCGA-BP-4163-01 7 107717486 107717486 A T LAMB4 Missense_Mutation p.I676N 0.27 deleterious(0) possibly_damaging(0.851) TCGA-BP-4163-01 7 89790291 89790291 T C STEAP1 Missense_Mutation p.F86S 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-BP-4163-01 8 145154959 145154959 G C SHARPIN Missense_Mutation p.N130K 0.22 tolerated(0.54) benign(0) TCGA-BP-4163-01 X 114864223 114864223 A G PLS3 Silent p.P148P 0.32 TCGA-BP-4163-01 X 153214763 153214763 T C HCFC1 3'UTR 0.11 TCGA-BP-4164-01 10 127461203 127461203 C T MMP21 Missense_Mutation p.D272N 0.78 tolerated(0.14) benign(0.152) TCGA-BP-4164-01 10 95066678 95066678 T C MYOF 3'UTR 0.72 TCGA-BP-4164-01 11 103908556 103908556 C T DDI1 Missense_Mutation p.R336W 0.14 deleterious(0) probably_damaging(0.991) TCGA-BP-4164-01 11 123810587 123810587 C T OR4D5 Silent p.G88G 0.13 TCGA-BP-4164-01 11 4608985 4608985 C T OR52I2 Missense_Mutation p.P315S 0.43 deleterious(0.01) benign(0.317) TCGA-BP-4164-01 12 102161789 102161789 C T GNPTAB Intron 0.39 TCGA-BP-4164-01 12 62148719 62148719 C A FAM19A2 Missense_Mutation p.V65F 0.15 deleterious(0) probably_damaging(1) TCGA-BP-4164-01 13 38162097 38162097 G A POSTN Silent p.N156N 0.47 TCGA-BP-4164-01 14 23826852 23826852 C T EFS Silent p.G423G 0.19 TCGA-BP-4164-01 14 24884470 24884470 C T NYNRIN Missense_Mutation p.T1172M 0.56 deleterious(0.05) benign(0.341) TCGA-BP-4164-01 14 61915969 61915970 AG - PRKCH Frame_Shift_Del p.K234Nfs*43 0.10 TCGA-BP-4164-01 14 80669284 80669284 A G DIO2 Silent p.D226D 0.22 TCGA-BP-4164-01 15 42150817 42150817 G C SPTBN5 Missense_Mutation p.Q2737E 0.58 benign(0.02) TCGA-BP-4164-01 16 9012898 9012898 T G USP7 Missense_Mutation p.Q237P 0.39 deleterious(0.01) probably_damaging(0.966) TCGA-BP-4164-01 17 10419922 10419922 G A MYH1 Missense_Mutation p.A13V 0.39 deleterious(0) probably_damaging(0.997) TCGA-BP-4164-01 17 39775697 39775697 C G KRT17 3'UTR 0.42 TCGA-BP-4164-01 17 41582097 41582097 G T DHX8 Silent p.G544G 0.39 TCGA-BP-4164-01 17 72920812 72920812 C G OTOP2 Missense_Mutation p.R29G 0.58 tolerated(0.05) probably_damaging(0.999) TCGA-BP-4164-01 19 19313097 19313097 C A NR2C2AP Intron 0.31 TCGA-BP-4164-01 19 3179874 3179874 C T S1PR4 Missense_Mutation p.R362C 0.50 deleterious(0) probably_damaging(0.98) TCGA-BP-4164-01 19 7267576 7267576 G A INSR Silent p.V144V 0.05 TCGA-BP-4164-01 1 112524688 112524688 G A KCND3 Missense_Mutation p.R221C 0.15 deleterious(0) benign(0.032) TCGA-BP-4164-01 1 207200938 207200938 G C C1orf116 Silent p.P2P 0.53 TCGA-BP-4164-01 1 223983623 223983623 G A TP53BP2 Missense_Mutation p.P873L 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-BP-4164-01 1 225288466 225288466 A G DNAH14 Silent p.K327K 0.47 TCGA-BP-4164-01 1 32051533 32051533 C A TINAGL1 Intron 0.38 TCGA-BP-4164-01 1 33292267 33292267 T G S100PBP Missense_Mutation p.N189K 0.13 tolerated(0.06) benign(0.117) TCGA-BP-4164-01 1 53387308 53387308 G T ECHDC2 Missense_Mutation p.P13H 0.48 tolerated(0.07) benign(0.004) TCGA-BP-4164-01 1 90049487 90049487 T C LRRC8B Silent p.L426L 0.45 TCGA-BP-4164-01 20 29847316 29847316 A G DEFB115 Missense_Mutation p.K50E 0.41 deleterious(0.03) possibly_damaging(0.908) TCGA-BP-4164-01 20 60963416 60963420 TCAAA G RPS21 Frame_Shift_Del p.S80Gfs*17 0.28 TCGA-BP-4164-01 21 47969770 47969770 G A DIP2A Missense_Mutation p.S870N 0.38 deleterious(0) probably_damaging(0.932) TCGA-BP-4164-01 22 38109337 38109337 C T TRIOBP Silent p.S125S 0.51 TCGA-BP-4164-01 2 155115568 155115568 G T GALNT13 Missense_Mutation p.D298Y 0.11 deleterious(0) probably_damaging(0.985) TCGA-BP-4164-01 2 204591400 204591400 G A CD28 Missense_Mutation p.D33N 0.14 tolerated(1) benign(0.002) TCGA-BP-4164-01 2 226378271 226378271 C T NYAP2 Missense_Mutation p.R136W 0.50 deleterious(0) probably_damaging(0.994) TCGA-BP-4164-01 2 84652703 84652703 A C SUCLG1 Missense_Mutation p.S284A 0.43 tolerated(0.38) benign(0.181) TCGA-BP-4164-01 3 10191532 10191532 C A VHL Nonsense_Mutation p.Y175* 0.75 TCGA-BP-4164-01 3 46477692 46477692 C T LTF Silent p.R709R 0.74 TCGA-BP-4164-01 3 51246204 51246204 G C DOCK3 Splice_Site p.X346_splice 0.72 TCGA-BP-4164-01 3 52584626 52584626 G A PBRM1 Nonsense_Mutation p.Q1463* 0.67 TCGA-BP-4164-01 4 122728760 122728760 T A EXOSC9 Missense_Mutation p.F196L 0.25 deleterious(0.04) possibly_damaging(0.836) TCGA-BP-4164-01 4 71495256 71495256 T G ENAM Silent p.P13P 0.23 TCGA-BP-4164-01 5 96111993 96111993 A - ERAP1 Intron 0.31 TCGA-BP-4164-01 6 56401585 56401585 T C DST Missense_Mutation p.N2965D 0.28 probably_damaging(0.999) TCGA-BP-4164-01 7 106888896 106888896 C T COG5 Missense_Mutation p.V631M 0.36 tolerated(0.12) possibly_damaging(0.729) TCGA-BP-4164-01 7 151860719 151860719 G A KMT2C Nonsense_Mutation p.Q3315* 0.38 TCGA-BP-4164-01 7 70255256 70255256 C T AUTS2 Silent p.P1018P 0.09 TCGA-BP-4164-01 7 81598283 81598283 C T CACNA2D1 Missense_Mutation p.G772E 0.36 tolerated(0.84) benign(0.005) TCGA-BP-4164-01 8 110432841 110432841 G A PKHD1L1 Missense_Mutation p.M873I 0.36 tolerated(0.89) benign(0) TCGA-BP-4164-01 8 121823811 121823811 G C SNTB1 Silent p.V91V 0.40 TCGA-BP-4164-01 9 113018762 113018762 G A TXN 5'UTR 0.25 TCGA-BP-4164-01 X 106093257 106093257 G A TBC1D8B Missense_Mutation p.A614T 0.41 deleterious(0) probably_damaging(0.996) TCGA-BP-4164-01 X 153649068 153649068 G T TAZ Missense_Mutation p.K257N 0.41 tolerated(0.06) benign(0.043) TCGA-BP-4164-01 X 46887437 46887437 C T JADE3 Missense_Mutation p.R207W 0.08 deleterious(0) probably_damaging(0.993) TCGA-BP-4164-01 X 89177557 89177557 C A TGIF2LX Missense_Mutation p.P158H 0.44 tolerated(0.11) probably_damaging(0.99) TCGA-BP-4167-01 10 3190208 3190208 C A PITRM1 Missense_Mutation p.M681I 0.07 deleterious(0) probably_damaging(0.992) TCGA-BP-4167-01 11 130775869 130775869 C G SNX19 Missense_Mutation p.D808H 0.07 tolerated(0.17) benign(0.009) TCGA-BP-4167-01 11 26465333 26465333 A G ANO3 Missense_Mutation p.N88S 0.09 tolerated_low_confidence(0.68) benign(0.007) TCGA-BP-4167-01 11 36614945 36614945 G A RAG2 Silent p.V258V 0.09 TCGA-BP-4167-01 11 56409234 56409234 A G OR5AP2 Missense_Mutation p.F228L 0.09 tolerated(1) benign(0.001) TCGA-BP-4167-01 11 62606659 62606659 C T WDR74 Missense_Mutation p.D74N 0.21 tolerated(0.19) benign(0.001) TCGA-BP-4167-01 12 102053492 102053492 C T MYBPC1 Missense_Mutation p.P579S 0.08 tolerated(0.33) benign(0.158) TCGA-BP-4167-01 12 122999662 122999662 A C RSRC2 Missense_Mutation p.L239V 0.06 deleterious(0.04) unknown(0) TCGA-BP-4167-01 12 14976216 14976216 A G C12orf60 Missense_Mutation p.K116R 0.07 tolerated(0.3) benign(0.006) TCGA-BP-4167-01 12 15091412 15091412 G T ERP27 Missense_Mutation p.L11I 0.24 tolerated(0.17) benign(0.05) TCGA-BP-4167-01 12 88589406 88589406 C T TMTC3 Missense_Mutation p.R909C 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BP-4167-01 12 96346551 96346551 G C AMDHD1 Missense_Mutation p.G65A 0.06 tolerated(0.69) benign(0.001) TCGA-BP-4167-01 13 114018172 114018172 T C GRTP1 Missense_Mutation p.E29G 0.09 deleterious(0.04) possibly_damaging(0.883) TCGA-BP-4167-01 14 105617708 105617708 C T JAG2 Silent p.P393P 0.21 TCGA-BP-4167-01 14 24568786 24568786 C A PCK2 Missense_Mutation p.P291H 0.07 deleterious(0) probably_damaging(0.999) TCGA-BP-4167-01 14 64746834 64746834 C T ESR2 Missense_Mutation p.A134T 0.09 tolerated(0.55) benign(0.001) TCGA-BP-4167-01 14 67389564 67389564 A G GPHN Missense_Mutation p.E213G 0.10 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-BP-4167-01 15 63901323 63901323 G A HERC1 Missense_Mutation p.S4848L 0.06 probably_damaging(0.99) TCGA-BP-4167-01 15 64972409 64972409 T C ZNF609 Silent p.S1265S 0.15 TCGA-BP-4167-01 16 24231171 24231171 C T PRKCB 3'UTR 0.16 TCGA-BP-4167-01 16 3274074 3274074 A T ZNF200 Missense_Mutation p.F336I 0.22 deleterious(0.01) benign(0.235) TCGA-BP-4167-01 16 49672052 49672052 A T ZNF423 Silent p.G337G 0.17 TCGA-BP-4167-01 16 67685104 67685104 G T RLTPR Missense_Mutation p.L733F 0.08 deleterious(0) benign(0.358) TCGA-BP-4167-01 17 15207259 15207259 G C TEKT3 Missense_Mutation p.F489L 0.12 deleterious(0.03) benign(0.06) TCGA-BP-4167-01 17 32953272 32953272 C A TMEM132E Nonsense_Mutation p.S65* 0.23 TCGA-BP-4167-01 17 3324243 3324243 G T OR3A3 Missense_Mutation p.A128S 0.10 deleterious(0.02) possibly_damaging(0.668) TCGA-BP-4167-01 17 38926611 38926611 C T KRT26 Missense_Mutation p.G192D 0.04 deleterious(0) possibly_damaging(0.524) TCGA-BP-4167-01 17 42925468 42925468 A G HIGD1B 5'UTR 0.15 TCGA-BP-4167-01 17 46799733 46799733 C T PRAC1 Missense_Mutation p.D8N 0.04 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-BP-4167-01 17 73999460 73999460 A G CDK3 Missense_Mutation p.E258G 0.09 tolerated(0.22) benign(0.003) TCGA-BP-4167-01 17 74732441 74732441 T C SRSF2 Silent p.R156R 0.10 TCGA-BP-4167-01 18 77488985 77488985 T A CTDP1 Silent p.S832S 0.08 TCGA-BP-4167-01 19 17373404 17373404 G A USHBP1 Missense_Mutation p.S200F 0.28 deleterious(0.01) benign(0.059) TCGA-BP-4167-01 19 19976780 19976780 A G ZNF253 5'UTR 0.12 TCGA-BP-4167-01 19 22574754 22574754 T G ZNF98 Missense_Mutation p.H428P 0.16 deleterious(0) probably_damaging(0.994) TCGA-BP-4167-01 19 3905489 3905489 C T ATCAY Missense_Mutation p.A65V 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-BP-4167-01 19 42793535 42793535 A T CIC Missense_Mutation p.E446V 0.13 probably_damaging(0.996) TCGA-BP-4167-01 19 43679580 43679580 A G PSG5 Missense_Mutation p.Y251H 0.15 deleterious(0.01) probably_damaging(1) TCGA-BP-4167-01 19 44116657 44116657 A C SRRM5 Silent p.G128G 0.19 TCGA-BP-4167-01 19 9072939 9072939 C T MUC16 Missense_Mutation p.G4836E 0.08 unknown(0) TCGA-BP-4167-01 1 103444415 103444415 C A COL11A1 Splice_Site p.X903_splice 0.08 TCGA-BP-4167-01 1 103540207 103540207 A - COL11A1 Frame_Shift_Del p.F206Lfs*19 0.10 TCGA-BP-4167-01 1 120436806 120436806 G - ADAM30 Frame_Shift_Del p.K719Nfs*107 0.10 TCGA-BP-4167-01 1 158655094 158655094 T G SPTA1 Missense_Mutation p.E23A 0.14 deleterious(0.03) benign(0.03) TCGA-BP-4167-01 1 16456059 16456059 T C EPHA2 Missense_Mutation p.S899G 0.13 tolerated(0.07) possibly_damaging(0.813) TCGA-BP-4167-01 1 171510546 171510546 G A PRRC2C Missense_Mutation p.R1312Q 0.14 unknown(0) TCGA-BP-4167-01 1 245850309 245850309 A T KIF26B Missense_Mutation p.I1342F 0.08 tolerated(0.36) unknown(0) TCGA-BP-4167-01 20 34285610 34285610 C T NFS1 Missense_Mutation p.R107H 0.10 deleterious(0.03) possibly_damaging(0.895) TCGA-BP-4167-01 20 54945046 54945046 A G AURKA 3'UTR 0.20 TCGA-BP-4167-01 21 15755498 15755498 C A HSPA13 5'UTR 0.09 TCGA-BP-4167-01 22 41973272 41973272 G T CSDC2 3'Flank 0.17 TCGA-BP-4167-01 22 46712158 46712158 C A GTSE1 Silent p.G427G 0.19 TCGA-BP-4167-01 22 46807533 46807533 A G CELSR1 Missense_Mutation p.C1579R 0.15 deleterious(0) probably_damaging(1) TCGA-BP-4167-01 2 141055473 141055473 C A LRP1B Missense_Mutation p.D4291Y 0.07 benign(0.026) TCGA-BP-4167-01 2 179473535 179473535 G T TTN Silent p.I17401I 0.07 TCGA-BP-4167-01 2 179604819 179604819 C T TTN Missense_Mutation p.E4381K 0.10 TCGA-BP-4167-01 2 179634658 179634658 T C TTN Missense_Mutation p.I2884V 0.06 TCGA-BP-4167-01 2 242099797 242099797 A G PPP1R7 Missense_Mutation p.K162R 0.06 tolerated(0.5) benign(0.012) TCGA-BP-4167-01 3 125286405 125286405 A C OSBPL11 Nonsense_Mutation p.L234* 0.13 TCGA-BP-4167-01 3 137813771 137813771 G T DZIP1L Missense_Mutation p.A214D 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-BP-4167-01 3 40574134 40574134 T A ZNF621 Nonsense_Mutation p.Y291* 0.10 TCGA-BP-4167-01 4 40045118 40045118 C T RP11-333E13.4 RNA 0.10 TCGA-BP-4167-01 4 71019995 71019995 C G C4orf40 5'UTR 0.12 TCGA-BP-4167-01 5 102612173 102612173 G C C5orf30 Missense_Mutation p.V185L 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.678) TCGA-BP-4167-01 5 126778707 126778707 T A MEGF10 Missense_Mutation p.Y794N 0.07 deleterious(0) probably_damaging(1) TCGA-BP-4167-01 5 126778709 126778709 T G MEGF10 Nonsense_Mutation p.Y794* 0.07 TCGA-BP-4167-01 5 139876772 139876772 T C ANKHD1 Silent p.H971H 0.10 TCGA-BP-4167-01 5 147261132 147261132 T C SCGB3A2 Missense_Mutation p.V60A 0.04 deleterious(0.04) benign(0.212) TCGA-BP-4167-01 6 123105017 123105017 C G FABP7 3'UTR 0.06 TCGA-BP-4167-01 6 149855820 149855820 T C PPIL4 Silent p.Q185Q 0.07 TCGA-BP-4167-01 6 152443659 152443659 T A SYNE1 Missense_Mutation p.E8769V 0.11 possibly_damaging(0.85) TCGA-BP-4167-01 6 31127384 31127384 C T TCF19 Silent p.P46P 0.16 TCGA-BP-4167-01 6 41034895 41034895 C A OARD1 3'UTR 0.19 TCGA-BP-4167-01 6 76022977 76022977 A T FILIP1 Silent p.P857P 0.12 TCGA-BP-4167-01 6 89790527 89790527 A T PNRC1 5'UTR 0.14 TCGA-BP-4167-01 7 100088627 100088627 G A NYAP1 Missense_Mutation p.R726H 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-BP-4167-01 7 117025841 117025841 A G ASZ1 Missense_Mutation p.Y155H 0.11 deleterious(0.03) possibly_damaging(0.688) TCGA-BP-4167-01 7 14378224 14378224 G A DGKB Nonsense_Mutation p.R681* 0.14 TCGA-BP-4167-01 7 48550784 48550784 G A ABCA13 Silent p.L4543L 0.04 TCGA-BP-4167-01 8 41791800 41791800 T C KAT6A Missense_Mutation p.D1313G 0.11 unknown(0) TCGA-BP-4167-01 9 128064585 128064585 T C GAPVD1 Missense_Mutation p.L170P 0.07 deleterious(0) probably_damaging(0.999) TCGA-BP-4167-01 X 100532702 100532702 C A TAF7L Nonsense_Mutation p.E281* 0.26 TCGA-BP-4167-01 X 136112680 136112680 C T GPR101 Missense_Mutation p.S385N 0.26 tolerated(0.26) benign(0.004) TCGA-BP-4167-01 X 140953292 140953292 C T MAGEC3 Silent p.A53A 0.12 TCGA-BP-4177-01 10 51974612 51974612 G C ASAH2 Missense_Mutation p.A344G 0.35 tolerated(0.17) benign(0.116) TCGA-BP-4177-01 14 92126293 92126293 A C CATSPERB Missense_Mutation p.F440L 0.27 deleterious(0) probably_damaging(0.994) TCGA-BP-4177-01 15 75091169 75091169 C A CSK Missense_Mutation p.D44E 0.12 tolerated(0.08) probably_damaging(0.977) TCGA-BP-4177-01 16 11829975 11829975 C A TXNDC11 Silent p.R123R 0.25 TCGA-BP-4177-01 16 21698935 21698935 C T OTOA Missense_Mutation p.P201S 0.30 deleterious(0) probably_damaging(1) TCGA-BP-4177-01 19 47234130 47234130 C T STRN4 Silent p.R246R 0.07 TCGA-BP-4177-01 19 48807247 48807247 C T CCDC114 Silent p.Q235Q 0.32 TCGA-BP-4177-01 1 27878461 27878461 C T AHDC1 Missense_Mutation p.A56T 0.28 tolerated_low_confidence(1) benign(0) TCGA-BP-4177-01 1 53373542 53373542 A G ECHDC2 Missense_Mutation p.I121T 0.06 deleterious(0) benign(0.386) TCGA-BP-4177-01 20 47991026 47991026 G A KCNB1 Silent p.D357D 0.07 TCGA-BP-4177-01 2 179458701 179458701 T G TTN Missense_Mutation p.Q19473H 0.27 TCGA-BP-4177-01 2 203242043 203242043 T A BMPR2 5'UTR 0.23 TCGA-BP-4177-01 2 37227889 37227889 C T HEATR5B Silent p.K1795K 0.30 TCGA-BP-4177-01 4 104512715 104512715 G A TACR3 Silent p.Y338Y 0.29 TCGA-BP-4177-01 4 44631452 44631452 A G YIPF7 Missense_Mutation p.F156L 0.20 deleterious(0) probably_damaging(0.996) TCGA-BP-4177-01 4 84502830 84502830 A G AGPAT9 Silent p.V108V 0.31 TCGA-BP-4177-01 5 19473301 19473301 A T CDH18 3'UTR 0.23 TCGA-BP-4177-01 5 68840911 68840911 C G OCLN Silent p.G406G 0.13 TCGA-BP-4177-01 6 116573926 116573926 A T TSPYL4 3'UTR 0.22 TCGA-BP-4177-01 7 89976030 89976030 A G GTPBP10 5'UTR 0.15 TCGA-BP-4177-01 8 41801275 41801275 C A KAT6A Missense_Mutation p.R740L 0.28 possibly_damaging(0.595) TCGA-BP-4760-01 11 46924371 46924371 G T LRP4 Missense_Mutation p.D54E 0.25 tolerated(0.36) benign(0.348) TCGA-BP-4760-01 11 47200712 47200712 C T PACSIN3 Missense_Mutation p.E300K 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-BP-4760-01 12 6334633 6334633 A G CD9 Silent p.R36R 0.05 TCGA-BP-4760-01 12 995245 995245 G T WNK1 Missense_Mutation p.A1759S 0.24 deleterious(0.04) benign(0.028) TCGA-BP-4760-01 14 106691745 106691745 G A IGHV3-21 Silent p.N93N 0.21 TCGA-BP-4760-01 16 139794 139794 G A NPRL3 Missense_Mutation p.P423L 0.32 tolerated(0.44) benign(0) TCGA-BP-4760-01 19 47424644 47424644 G A ARHGAP35 Silent p.Q904Q 0.28 TCGA-BP-4760-01 19 57327002 57327002 A G PEG3 Silent p.R936R 0.22 TCGA-BP-4760-01 1 111059964 111059964 T G KCNA10 Missense_Mutation p.R482S 0.03 tolerated_low_confidence(0.48) benign(0.007) TCGA-BP-4760-01 2 219892412 219892412 C A CCDC108 Missense_Mutation p.C724F 0.08 deleterious(0.04) benign(0.325) TCGA-BP-4760-01 3 100432611 100432611 A - TFG Frame_Shift_Del p.N28Mfs*9 0.25 TCGA-BP-4760-01 3 141934478 141934478 C T GK5 Nonsense_Mutation p.W68* 0.05 TCGA-BP-4760-01 5 102894748 102894748 G A NUDT12 Missense_Mutation p.L210F 0.08 tolerated(0.79) benign(0.003) TCGA-BP-4760-01 5 150838431 150838431 G A SLC36A1 Silent p.S26S 0.36 TCGA-BP-4760-01 6 3324228 3324228 G A SLC22A23 Silent p.L308L 0.24 TCGA-BP-4760-01 6 7570788 7570788 A G DSP Missense_Mutation p.I565V 0.32 possibly_damaging(0.478) TCGA-BP-4760-01 7 107399418 107399418 A T CBLL1 Missense_Mutation p.Y424F 0.09 deleterious(0.05) probably_damaging(0.98) TCGA-BP-4760-01 7 44161720 44161720 C A POLD2 5'UTR 0.19 TCGA-BP-4760-01 9 120475351 120475351 G C TLR4 Silent p.L315L 0.26 TCGA-BP-4760-01 X 101913005 101913005 C T GPRASP1 Silent p.D1388D 0.09 TCGA-BP-4770-01 10 49386082 49386082 A T FRMPD2 Intron 0.04 TCGA-BP-4770-01 10 5800947 5800947 A T FAM208B Missense_Mutation p.E2328D 0.11 deleterious(0.04) possibly_damaging(0.606) TCGA-BP-4770-01 11 123909632 123909632 A T OR10G7 Missense_Mutation p.F26Y 0.77 deleterious(0) possibly_damaging(0.493) TCGA-BP-4770-01 11 18725908 18725908 A G TMEM86A 3'UTR 0.06 TCGA-BP-4770-01 11 51412339 51412339 A T OR4A5 Silent p.P19P 0.11 TCGA-BP-4770-01 11 551241 551241 G C LRRC56 Silent p.L245L 0.23 TCGA-BP-4770-01 11 56057618 56057618 T C OR8H1 Silent p.R307R 0.11 TCGA-BP-4770-01 11 57982325 57982325 C A OR1S1 Missense_Mutation p.Q37K 0.22 deleterious(0.02) possibly_damaging(0.611) TCGA-BP-4770-01 11 64822097 64822097 C A NAALADL1 Silent p.L239L 0.69 TCGA-BP-4770-01 11 6806389 6806389 A G OR2AG1 Missense_Mutation p.S41G 0.30 tolerated(1) benign(0.077) TCGA-BP-4770-01 12 13761600 13761600 G T GRIN2B Missense_Mutation p.N649K 0.41 deleterious(0) possibly_damaging(0.589) TCGA-BP-4770-01 12 33579206 33579206 C A SYT10 Missense_Mutation p.A126S 0.03 tolerated(0.44) benign(0.026) TCGA-BP-4770-01 12 93835705 93835705 T C UBE2N 5'UTR 0.09 TCGA-BP-4770-01 13 30062042 30062042 A T MTUS2 Missense_Mutation p.E1145D 0.60 tolerated(0.05) possibly_damaging(0.849) TCGA-BP-4770-01 13 49030485 49030485 G A RB1 Missense_Mutation p.V654M 0.53 deleterious(0.02) probably_damaging(1) TCGA-BP-4770-01 14 21793025 21793025 G T RPGRIP1 Missense_Mutation p.G671W 0.09 deleterious(0) probably_damaging(1) TCGA-BP-4770-01 14 22521194 22521194 G T TRAV21 Missense_Mutation p.S72I 0.06 tolerated(0.18) benign(0.143) TCGA-BP-4770-01 14 58563699 58563699 T C C14orf37 Missense_Mutation p.E611G 0.28 tolerated(0.13) benign(0.012) TCGA-BP-4770-01 14 72976891 72976891 G T RGS6 Missense_Mutation p.R332I 0.39 deleterious(0) benign(0.382) TCGA-BP-4770-01 14 94069647 94069647 A G UNC79 Missense_Mutation p.R1036G 0.05 deleterious(0) probably_damaging(0.995) TCGA-BP-4770-01 14 95080851 95080851 C A SERPINA3 Missense_Mutation p.P25T 0.70 deleterious(0.02) possibly_damaging(0.703) TCGA-BP-4770-01 15 60770238 60770238 A C NARG2 5'UTR 0.67 TCGA-BP-4770-01 15 75134629 75134629 C G ULK3 Missense_Mutation p.D79H 0.76 deleterious(0) probably_damaging(0.999) TCGA-BP-4770-01 15 85659326 85659326 A T PDE8A Missense_Mutation p.E504V 0.74 deleterious(0.01) benign(0.31) TCGA-BP-4770-01 16 10788637 10788637 T C TEKT5 Missense_Mutation p.I32V 0.34 tolerated(0.66) benign(0.001) TCGA-BP-4770-01 16 55539451 55539451 C T MMP2 3'UTR 0.10 TCGA-BP-4770-01 17 40945664 40945664 C T WNK4 Missense_Mutation p.R738W 0.78 deleterious(0) unknown(0) TCGA-BP-4770-01 17 7324820 7324820 C T SPEM1 Missense_Mutation p.R276W 0.14 deleterious(0) possibly_damaging(0.738) TCGA-BP-4770-01 17 73830529 73830529 C T UNC13D Silent p.E725E 0.70 TCGA-BP-4770-01 17 7577498 7577498 C A TP53 Splice_Site p.X261_splice 0.72 TCGA-BP-4770-01 18 44098173 44098173 C T LOXHD1 Missense_Mutation p.G662D 0.15 deleterious(0) probably_damaging(0.986) TCGA-BP-4770-01 18 61255920 61255920 G A SERPINB13 Missense_Mutation p.V7I 0.44 deleterious(0) benign(0.004) TCGA-BP-4770-01 19 14213667 14213667 G A PRKACA Silent p.V99V 0.06 TCGA-BP-4770-01 19 15989682 15989682 G A CYP4F2 Missense_Mutation p.R488C 0.55 deleterious(0.02) benign(0.431) TCGA-BP-4770-01 19 22940439 22940439 C G ZNF99 Missense_Mutation p.E758Q 0.38 deleterious(0.02) benign(0.363) TCGA-BP-4770-01 19 39735134 39735134 C T IFNL3 Missense_Mutation p.E61K 0.66 deleterious(0.01) probably_damaging(0.985) TCGA-BP-4770-01 19 49972161 49972161 T A ALDH16A1 Missense_Mutation p.V722E 0.66 deleterious(0) probably_damaging(0.976) TCGA-BP-4770-01 19 9047434 9047434 A G MUC16 Silent p.D11399D 0.62 TCGA-BP-4770-01 19 9074345 9074345 T C MUC16 Silent p.T4367T 0.66 TCGA-BP-4770-01 1 112304651 112304651 C T DDX20 Intron 0.67 TCGA-BP-4770-01 1 114137127 114137127 G C MAGI3 Missense_Mutation p.W321C 0.03 deleterious(0) probably_damaging(1) TCGA-BP-4770-01 1 153065957 153065957 A C SPRR2E 3'UTR 0.03 TCGA-BP-4770-01 1 175323627 175323627 A T TNR Silent p.I1094I 0.77 TCGA-BP-4770-01 1 203472837 203472837 C T OPTC Missense_Mutation p.R330C 0.09 deleterious(0.04) benign(0.022) TCGA-BP-4770-01 1 248525734 248525734 T C OR2T4 Silent p.Y284Y 0.18 TCGA-BP-4770-01 1 248756244 248756244 A C OR2T10 Missense_Mutation p.F276V 0.08 tolerated(0.47) benign(0.001) TCGA-BP-4770-01 20 47605057 47605057 T A ARFGEF2 Nonsense_Mutation p.Y797* 0.47 TCGA-BP-4770-01 2 122488643 122488643 G A NIFK Silent p.L130L 0.29 TCGA-BP-4770-01 2 217285020 217285020 A T SMARCAL1 Splice_Site p.X288_splice 0.68 TCGA-BP-4770-01 2 45620107 45620107 G T SRBD1 Missense_Mutation p.P892H 0.27 deleterious(0) probably_damaging(1) TCGA-BP-4770-01 2 45667 45667 C T FAM110C Missense_Mutation p.G240E 0.71 tolerated(0.77) benign(0.305) TCGA-BP-4770-01 2 71738941 71738941 C G DYSF Missense_Mutation p.S117W 0.31 deleterious(0) probably_damaging(0.967) TCGA-BP-4770-01 3 133558406 133558406 C G RAB6B Missense_Mutation p.R115S 0.08 deleterious(0.01) possibly_damaging(0.685) TCGA-BP-4770-01 3 51455599 51455599 A C VPRBP Silent p.L734L 0.29 TCGA-BP-4770-01 3 98251797 98251797 G T GPR15 Missense_Mutation p.S307I 0.81 tolerated(0.1) benign(0.429) TCGA-BP-4770-01 4 121957408 121957408 T C NDNF 3'UTR 0.56 TCGA-BP-4770-01 4 367075 367075 C T ZNF141 Silent p.I283I 0.07 TCGA-BP-4770-01 5 140236094 140236094 A G PCDHA10 Missense_Mutation p.E154G 0.30 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-BP-4770-01 5 140798186 140798186 G C PCDHGB7 Missense_Mutation p.D254H 0.51 deleterious(0) possibly_damaging(0.906) TCGA-BP-4770-01 5 66478939 66478939 G T CD180 Missense_Mutation p.P578T 0.54 deleterious(0.02) probably_damaging(0.971) TCGA-BP-4770-01 6 152809562 152809562 A G SYNE1 Missense_Mutation p.M339T 0.49 benign(0.007) TCGA-BP-4770-01 6 65655781 65655781 A C EYS Missense_Mutation p.D762E 0.15 deleterious(0.01) benign(0.013) TCGA-BP-4770-01 7 100463346 100463346 A C SLC12A9 Missense_Mutation p.M622L 0.65 deleterious(0) possibly_damaging(0.829) TCGA-BP-4770-01 7 103179687 103179687 C G RELN Missense_Mutation p.G2340R 0.07 deleterious(0) probably_damaging(1) TCGA-BP-4770-01 7 151970836 151970836 G A KMT2C Silent p.H322H 0.03 TCGA-BP-4770-01 7 23207478 23207478 G A KLHL7 Missense_Mutation p.E401K 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-BP-4770-01 7 74191683 74191683 A G NCF1 Missense_Mutation p.Y48C 0.75 deleterious(0) probably_damaging(0.995) TCGA-BP-4770-01 7 98574329 98574329 T G TRRAP Missense_Mutation p.L2721R 0.29 benign(0.147) TCGA-BP-4770-01 8 144992443 144992443 G T PLEC Missense_Mutation p.P3986Q 0.75 probably_damaging(1) TCGA-BP-4770-01 8 38001871 38001871 G T STAR Missense_Mutation p.L260M 0.63 deleterious(0) possibly_damaging(0.471) TCGA-BP-4770-01 9 1056689 1056689 C G DMRT2 Missense_Mutation p.Q368E 0.31 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-BP-4770-01 9 123745015 123745015 G A C5 Missense_Mutation p.S1103F 0.19 deleterious(0) probably_damaging(0.958) TCGA-BP-4770-01 9 14748599 14748599 G T FREM1 Missense_Mutation p.H1866N 0.27 tolerated(0.13) benign(0.002) TCGA-BP-4770-01 X 48751506 48751506 T C TIMM17B Missense_Mutation p.S115G 0.25 deleterious(0.03) possibly_damaging(0.615) TCGA-BP-4782-01 10 90438403 90438403 G A LIPF Missense_Mutation p.D398N 0.19 deleterious(0) benign(0.086) TCGA-BP-4782-01 11 64972256 64972260 TTATG - CAPN1 Frame_Shift_Del p.L423Pfs*39 0.36 TCGA-BP-4782-01 11 703112 703112 G C TMEM80 Missense_Mutation p.V157L 0.17 tolerated(0.35) benign(0.132) TCGA-BP-4782-01 11 77727894 77727894 G T KCTD14 Nonsense_Mutation p.C171* 0.18 TCGA-BP-4782-01 12 111290715 111290715 C T CCDC63 5'UTR 0.08 TCGA-BP-4782-01 12 26839514 26839514 T C ITPR2 Missense_Mutation p.I350V 0.14 tolerated(0.25) benign(0.1) TCGA-BP-4782-01 12 39730918 39730918 T G KIF21A Missense_Mutation p.K800Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-BP-4782-01 12 53207401 53207401 A G KRT4 Missense_Mutation p.F148L 0.04 deleterious(0) probably_damaging(0.994) TCGA-BP-4782-01 12 56750313 56750313 G A STAT2 Nonsense_Mutation p.Q15* 0.36 TCGA-BP-4782-01 12 58158259 58158259 C T CYP27B1 Silent p.E346E 0.17 TCGA-BP-4782-01 13 32313748 32313748 C T RXFP2 5'UTR 0.04 TCGA-BP-4782-01 13 32841377 32841377 C A FRY Missense_Mutation p.Q2673K 0.24 tolerated(0.27) probably_damaging(0.996) TCGA-BP-4782-01 13 36049398 36049398 T A MAB21L1 Missense_Mutation p.E293V 0.19 deleterious(0.02) possibly_damaging(0.772) TCGA-BP-4782-01 13 52293353 52293353 G C WDFY2 Silent p.T118T 0.16 TCGA-BP-4782-01 14 23891451 23891451 C A MYH7 Silent p.L1061L 0.17 TCGA-BP-4782-01 15 42375975 42375975 G A PLA2G4D Silent p.A158A 0.07 TCGA-BP-4782-01 15 56393665 56393665 T - RFX7 Frame_Shift_Del p.S235Afs*10 0.14 TCGA-BP-4782-01 16 1827748 1827748 C G SPSB3 Missense_Mutation p.G241R 0.30 deleterious(0) probably_damaging(0.99) TCGA-BP-4782-01 16 31213519 31213523 CAGAG AT PYCARD Nonsense_Mutation p.S93_G94delins* 0.28 TCGA-BP-4782-01 16 4953994 4953994 C A PPL Silent p.V70V 0.15 TCGA-BP-4782-01 16 61761044 61761044 G A CDH8 Missense_Mutation p.A497V 0.08 deleterious(0.02) probably_damaging(0.994) TCGA-BP-4782-01 16 67262757 67262757 T A TMEM208 Silent p.S119S 0.15 TCGA-BP-4782-01 17 11648206 11648206 G T DNAH9 Missense_Mutation p.Q2068H 0.14 benign(0.087) TCGA-BP-4782-01 17 42266747 42266747 G A TMUB2 Silent p.E131E 0.16 TCGA-BP-4782-01 17 43517526 43517526 T C PLEKHM1 Intron 0.23 TCGA-BP-4782-01 17 48703477 48703477 T A CACNA1G Missense_Mutation p.Y2167N 0.12 tolerated_low_confidence(0.57) benign(0.017) TCGA-BP-4782-01 17 4937468 4937468 C T SLC52A1 Missense_Mutation p.A106T 0.24 tolerated(0.05) benign(0.078) TCGA-BP-4782-01 17 51902361 51902361 A - KIF2B Frame_Shift_Del p.K657Rfs*3 0.19 TCGA-BP-4782-01 17 73814863 73814863 C T UNK Silent p.F504F 0.08 TCGA-BP-4782-01 17 73816152 73816152 C - UNK Frame_Shift_Del p.N600Kfs*15 0.21 TCGA-BP-4782-01 17 74276934 74276934 C T QRICH2 Missense_Mutation p.R1289Q 0.20 tolerated(0.19) benign(0.077) TCGA-BP-4782-01 18 57103088 57103088 C T CCBE1 3'UTR 0.25 TCGA-BP-4782-01 19 1461048 1461048 A G APC2 Missense_Mutation p.I512V 0.18 benign(0.223) TCGA-BP-4782-01 19 16229096 16229096 G - RAB8A Frame_Shift_Del 0.17 TCGA-BP-4782-01 19 17010350 17010350 T G CPAMD8 Missense_Mutation p.D1642A 0.21 tolerated(0.08) possibly_damaging(0.476) TCGA-BP-4782-01 19 48845836 48845836 G T TMEM143 Missense_Mutation p.S309Y 0.08 tolerated(0.05) possibly_damaging(0.879) TCGA-BP-4782-01 19 50322487 50322487 C G MED25 Missense_Mutation p.S80C 0.16 deleterious(0.02) benign(0.425) TCGA-BP-4782-01 19 57931180 57931180 C G AC003002.6 Missense_Mutation p.P119R 0.15 deleterious(0.02) benign(0.152) TCGA-BP-4782-01 1 104297213 104297213 G T AMY1C Missense_Mutation p.G324V 0.06 deleterious(0.02) probably_damaging(1) TCGA-BP-4782-01 1 169100845 169100845 C G ATP1B1 3'UTR 0.10 TCGA-BP-4782-01 1 175360502 175360502 C G TNR Missense_Mutation p.G477R 0.24 deleterious(0) probably_damaging(1) TCGA-BP-4782-01 1 203316788 203316788 G A FMOD Missense_Mutation p.A204V 0.23 tolerated(1) possibly_damaging(0.577) TCGA-BP-4782-01 1 203453269 203453269 C A PRELP Missense_Mutation p.N319K 0.21 deleterious(0.02) possibly_damaging(0.811) TCGA-BP-4782-01 1 203468978 203468978 G C OPTC Missense_Mutation p.R244T 0.10 deleterious(0.02) benign(0.044) TCGA-BP-4782-01 1 22336337 22336337 A G CELA3A Missense_Mutation p.D261G 0.14 tolerated(0.07) benign(0.033) TCGA-BP-4782-01 1 229770885 229770885 G - URB2 Frame_Shift_Del p.A176Pfs*7 0.15 TCGA-BP-4782-01 1 235907322 235907322 T C LYST Missense_Mutation p.K2703R 0.06 tolerated(0.26) benign(0.028) TCGA-BP-4782-01 1 46743873 46743873 G A RAD54L Silent p.Q721Q 0.37 TCGA-BP-4782-01 1 75622627 75622627 A G LHX8 Missense_Mutation p.N287S 0.05 tolerated(0.21) possibly_damaging(0.45) TCGA-BP-4782-01 20 23066499 23066499 G A CD93 Silent p.L111L 0.27 TCGA-BP-4782-01 20 33703229 33703229 C T EDEM2 3'UTR 0.21 TCGA-BP-4782-01 20 34292611 34292611 A G RBM39 Silent p.L491L 0.19 TCGA-BP-4782-01 21 40834425 40834425 A G SH3BGR Missense_Mutation p.K120R 0.26 tolerated(0.08) benign(0.291) TCGA-BP-4782-01 21 43164104 43164104 T A RIPK4 Missense_Mutation p.D378V 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-BP-4782-01 22 22890580 22890580 A G PRAME Missense_Mutation p.V480A 0.30 deleterious(0) possibly_damaging(0.672) TCGA-BP-4782-01 22 37196902 37196902 A G PVALB 3'UTR 0.16 TCGA-BP-4782-01 22 39441014 39441014 T A APOBEC3F Silent p.P80P 0.25 TCGA-BP-4782-01 2 170531175 170531175 G - CCDC173 Frame_Shift_Del p.N192Tfs*28 0.22 TCGA-BP-4782-01 2 179406098 179406098 T A TTN Missense_Mutation p.E32569V 0.14 TCGA-BP-4782-01 2 179410271 179410271 G - TTN Frame_Shift_Del p.R31856Vfs*13 0.24 TCGA-BP-4782-01 2 198949407 198949407 T G PLCL1 Missense_Mutation p.F389C 0.18 deleterious(0) probably_damaging(0.994) TCGA-BP-4782-01 2 226447525 226447525 C A NYAP2 Missense_Mutation p.S464R 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-BP-4782-01 2 226447526 226447526 C G NYAP2 Missense_Mutation p.L465V 0.13 tolerated(0.14) benign(0.248) TCGA-BP-4782-01 2 232321358 232321358 T C NCL Silent p.S563S 0.17 TCGA-BP-4782-01 2 233246044 233246044 G T ALPP Missense_Mutation p.G426C 0.09 deleterious(0.01) probably_damaging(0.922) TCGA-BP-4782-01 2 233274125 233274125 G T ALPPL2 Missense_Mutation p.G423C 0.12 deleterious(0.01) benign(0.215) TCGA-BP-4782-01 2 70475611 70475611 A C TIA1 5'UTR 0.17 TCGA-BP-4782-01 2 70475612 70475612 C T TIA1 5'UTR 0.15 TCGA-BP-4782-01 3 10083177 10083177 A C FANCD2 Intron 0.17 TCGA-BP-4782-01 3 171323102 171323102 G T PLD1 Missense_Mutation p.T996K 0.18 tolerated(0.05) probably_damaging(0.978) TCGA-BP-4782-01 3 186504360 186504360 A C EIF4A2 Missense_Mutation p.I233L 0.23 deleterious(0.05) benign(0.096) TCGA-BP-4782-01 3 20153227 20153227 A G KAT2B Missense_Mutation p.K331E 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-BP-4782-01 3 52393986 52393986 G C DNAH1 Missense_Mutation p.V1488L 0.25 benign(0.003) TCGA-BP-4782-01 3 98251550 98251550 C A GPR15 Missense_Mutation p.H225N 0.22 deleterious(0) possibly_damaging(0.82) TCGA-BP-4782-01 4 38690220 38690220 T G KLF3 Missense_Mutation p.N24K 0.20 tolerated(0.14) benign(0.018) TCGA-BP-4782-01 4 44705267 44705267 C G GNPDA2 Intron 0.26 TCGA-BP-4782-01 5 137524758 137524758 G C CDC23 Missense_Mutation p.P568R 0.20 tolerated(0.06) benign(0.045) TCGA-BP-4782-01 5 138269640 138269640 G A CTNNA1 Missense_Mutation p.M861I 0.15 deleterious(0) probably_damaging(0.964) TCGA-BP-4782-01 6 11778959 11778959 G C ADTRP Missense_Mutation p.L12V 0.24 tolerated(0.16) benign(0.169) TCGA-BP-4782-01 6 16328126 16328126 T C ATXN1 Missense_Mutation p.Y139C 0.15 deleterious(0) probably_damaging(0.979) TCGA-BP-4782-01 6 38891824 38891824 T G DNAH8 Missense_Mutation p.N3399K 0.19 possibly_damaging(0.58) TCGA-BP-4782-01 6 72960946 72960946 T A RIMS1 Nonsense_Mutation p.L858* 0.13 TCGA-BP-4782-01 7 127670011 127670011 T C LRRC4 Missense_Mutation p.N228S 0.29 deleterious(0) probably_damaging(0.999) TCGA-BP-4782-01 7 23737866 23737866 C A FAM221A Missense_Mutation p.F231L 0.22 deleterious(0.05) probably_damaging(0.987) TCGA-BP-4782-01 7 43503283 43503283 T C HECW1 Silent p.I892I 0.26 TCGA-BP-4782-01 7 56022693 56022693 C T MRPS17 Missense_Mutation p.P72L 0.23 tolerated(0.05) benign(0.219) TCGA-BP-4782-01 7 6226736 6226736 T G CYTH3 Missense_Mutation p.Q65P 0.24 tolerated(0.2) possibly_damaging(0.464) TCGA-BP-4782-01 7 66248812 66248812 G C KCTD7 Missense_Mutation p.G166A 0.23 tolerated(0.71) benign(0) TCGA-BP-4782-01 7 7680049 7680049 T C RPA3 Translation_Start_Site p.M1? 0.22 deleterious(0.04) benign(0.015) TCGA-BP-4782-01 7 97834847 97834847 G T LMTK2 3'UTR 0.16 TCGA-BP-4782-01 8 10465398 10465398 C G RP1L1 Missense_Mutation p.E2070D 0.25 unknown(0) TCGA-BP-4782-01 8 141310714 141310714 C T TRAPPC9 Splice_Site p.X639_splice 0.19 TCGA-BP-4782-01 8 74204500 74204500 T A RPL7 Missense_Mutation p.K88N 0.18 deleterious(0.02) benign(0.09) TCGA-BP-4782-01 9 131021536 131021536 C T GOLGA2 Silent p.L642L 0.08 TCGA-BP-4782-01 9 134351306 134351306 G C PRRC2B Missense_Mutation p.D1264H 0.20 deleterious(0.02) possibly_damaging(0.836) TCGA-BP-4782-01 9 35075002 35075002 G A FANCG Missense_Mutation p.R520C 0.10 deleterious(0) probably_damaging(1) TCGA-BP-4782-01 9 35075004 35075004 C G FANCG Missense_Mutation p.S519T 0.09 tolerated(0.13) probably_damaging(0.997) TCGA-BP-4782-01 9 35738346 35738346 C T GBA2 Missense_Mutation p.A694T 0.24 deleterious(0) probably_damaging(0.946) TCGA-BP-4782-01 X 110951455 110951455 T - ALG13 Frame_Shift_Del p.L195Pfs*23 0.20 TCGA-BP-4782-01 X 111003299 111003299 T C ALG13 3'UTR 0.21 TCGA-BP-4782-01 X 119077352 119077352 G T NKAP Missense_Mutation p.R73S 0.23 tolerated(0.36) possibly_damaging(0.823) TCGA-BP-4782-01 X 119694026 119694026 G T CUL4B Missense_Mutation p.N174K 0.20 deleterious(0.03) benign(0.032) TCGA-BP-4782-01 X 18622979 18622979 G C CDKL5 Missense_Mutation p.L645F 0.17 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-BP-4782-01 X 71359245 71359245 A C NHSL2 Missense_Mutation p.D616A 0.26 deleterious(0) benign(0.138) TCGA-BP-4782-01 X 79698411 79698411 A T FAM46D Missense_Mutation p.I125F 0.08 deleterious(0.02) benign(0.013) TCGA-BP-4795-01 11 104034545 104034545 G T PDGFD Missense_Mutation p.N37K 0.18 tolerated(0.1) benign(0.006) TCGA-BP-4795-01 13 107164902 107164902 C T EFNB2 Silent p.Q127Q 0.25 TCGA-BP-4795-01 14 24590630 24590630 G A DCAF11 Missense_Mutation p.G435R 0.18 tolerated(0.09) benign(0.259) TCGA-BP-4795-01 14 33015692 33015692 A T AKAP6 Silent p.P611P 0.16 TCGA-BP-4795-01 14 39819379 39819379 T A CTAGE5 Missense_Mutation p.S781T 0.19 deleterious(0.01) benign(0.096) TCGA-BP-4795-01 14 57675240 57675240 C A EXOC5 3'UTR 0.06 TCGA-BP-4795-01 14 89153576 89153576 C T EML5 Silent p.L946L 0.19 TCGA-BP-4795-01 15 25232121 25232121 C G SNORD108 RNA 0.13 TCGA-BP-4795-01 15 71276512 71276512 A C LRRC49 Missense_Mutation p.N367T 0.14 tolerated(0.45) benign(0.004) TCGA-BP-4795-01 15 74426565 74426565 G A ISLR2 Silent p.A490A 0.31 TCGA-BP-4795-01 15 90631628 90631628 G A IDH2 Missense_Mutation p.A214V 0.10 deleterious_low_confidence(0) benign(0.135) TCGA-BP-4795-01 16 67203204 67203204 G A HSF4 Missense_Mutation p.R426Q 0.08 tolerated(0.18) benign(0.087) TCGA-BP-4795-01 17 40690727 40690727 C T NAGLU Missense_Mutation p.P240S 0.20 deleterious(0.01) probably_damaging(0.938) TCGA-BP-4795-01 18 34846536 34846536 G T CELF4 Silent p.P375P 0.19 TCGA-BP-4795-01 18 59895745 59895745 A G KIAA1468 Silent p.P454P 0.21 TCGA-BP-4795-01 19 2438508 2438508 C T LMNB2 Silent p.E141E 0.33 TCGA-BP-4795-01 19 55716831 55716831 C T PTPRH Missense_Mutation p.G161D 0.21 unknown(0) TCGA-BP-4795-01 1 112269769 112269769 C T FAM212B Missense_Mutation p.E239K 0.06 deleterious(0.04) benign(0.206) TCGA-BP-4795-01 1 154842012 154842012 G A KCNN3 Silent p.S143S 0.13 TCGA-BP-4795-01 1 9804590 9804590 T C CLSTN1 Missense_Mutation p.N366S 0.20 deleterious(0.03) possibly_damaging(0.588) TCGA-BP-4795-01 2 163256910 163256910 A G KCNH7 Silent p.C732C 0.19 TCGA-BP-4795-01 2 48897082 48897082 T C STON1-GTF2A1L Silent p.S1104S 0.17 TCGA-BP-4795-01 2 95539321 95539321 A G TEKT4 Silent p.A185A 0.17 TCGA-BP-4795-01 3 27446453 27446453 C T SLC4A7 Missense_Mutation p.S639N 0.23 deleterious(0) possibly_damaging(0.799) TCGA-BP-4795-01 3 9956185 9956185 A G IL17RE Intron 0.18 TCGA-BP-4795-01 6 105548963 105548963 A T BVES 3'UTR 0.17 TCGA-BP-4795-01 7 126544081 126544081 T A GRM8 Missense_Mutation p.Q321H 0.19 tolerated(0.54) possibly_damaging(0.897) TCGA-BP-4795-01 7 135390994 135390994 G A SLC13A4 Silent p.N140N 0.18 TCGA-BP-4795-01 7 28848894 28848894 G A CREB5 Missense_Mutation p.D373N 0.27 deleterious(0) unknown(0) TCGA-BP-4795-01 7 31617737 31617737 T C CCDC129 Missense_Mutation p.F313L 0.24 tolerated(0.44) benign(0.012) TCGA-BP-4795-01 8 33371089 33371089 G A TTI2 5'UTR 0.20 TCGA-BP-4801-01 10 92617162 92617162 C G HTR7 Silent p.T89T 0.19 TCGA-BP-4801-01 11 1017568 1017568 T C MUC6 Missense_Mutation p.T1745A 0.02 unknown(0) TCGA-BP-4801-01 11 108139152 108139155 TAGC - ATM Frame_Shift_Del p.A886Kfs*12 0.17 TCGA-BP-4801-01 11 111951425 111951425 T G C11orf57 Intron 0.27 TCGA-BP-4801-01 11 117332278 117332278 C G DSCAML1 Silent p.L1160L 0.17 TCGA-BP-4801-01 11 64676580 64676580 C G ATG2A Missense_Mutation p.W749C 0.09 tolerated(0.12) probably_damaging(0.94) TCGA-BP-4801-01 11 68747868 68747868 C G MRGPRD Silent p.L196L 0.19 TCGA-BP-4801-01 12 104476286 104476286 T - HCFC2 Frame_Shift_Del p.F260Lfs*30 0.20 TCGA-BP-4801-01 12 110783864 110783864 G C ATP2A2 Missense_Mutation p.G934R 0.22 tolerated(0.14) probably_damaging(0.961) TCGA-BP-4801-01 12 3659255 3659255 G A PRMT8 Missense_Mutation p.G139R 0.14 deleterious(0) possibly_damaging(0.883) TCGA-BP-4801-01 12 71029653 71029653 G T PTPRB Silent p.I83I 0.20 TCGA-BP-4801-01 13 32906553 32906553 C A BRCA2 Missense_Mutation p.S313Y 0.19 deleterious(0.02) probably_damaging(0.946) TCGA-BP-4801-01 13 95092164 95092165 TG - DCT Frame_Shift_Del p.T549Rfs*11 0.21 TCGA-BP-4801-01 13 99947650 99947652 AAT - GPR183 In_Frame_Del p.I250del 0.21 TCGA-BP-4801-01 14 77844922 77844922 C T SAMD15 Silent p.I387I 0.19 TCGA-BP-4801-01 15 45470431 45470431 C A SHF Missense_Mutation p.G126V 0.24 tolerated(0.21) benign(0.021) TCGA-BP-4801-01 15 91430480 91430480 A G FES Missense_Mutation p.H183R 0.24 deleterious(0) probably_damaging(0.999) TCGA-BP-4801-01 16 19883415 19883415 C T GPRC5B Missense_Mutation p.M251I 0.25 tolerated(1) benign(0.003) TCGA-BP-4801-01 16 2126066 2126070 CAGGT AAGA TSC2 Splice_Site p.X880_splice 0.18 TCGA-BP-4801-01 16 27460474 27460474 G T IL21R Missense_Mutation p.G496V 0.19 deleterious(0) probably_damaging(0.973) TCGA-BP-4801-01 17 18178133 18178133 A - TOP3A Frame_Shift_Del p.C997Vfs*11 0.27 TCGA-BP-4801-01 17 20239187 20239187 A T RN7SL17P 5'Flank 0.14 TCGA-BP-4801-01 17 2238674 2238674 C A TSR1 Missense_Mutation p.V146L 0.18 tolerated(0.52) benign(0.007) TCGA-BP-4801-01 17 42249679 42249679 G A ASB16 Silent p.L189L 0.18 TCGA-BP-4801-01 17 45891939 45891939 G C OSBPL7 Silent p.T433T 0.12 TCGA-BP-4801-01 17 5392574 5392574 A C MIS12 Missense_Mutation p.E131A 0.23 deleterious(0) probably_damaging(0.999) TCGA-BP-4801-01 17 80622419 80622419 C A RAB40B Missense_Mutation p.K52N 0.13 deleterious(0) possibly_damaging(0.845) TCGA-BP-4801-01 18 48335764 48335764 G T MRO Intron 0.21 TCGA-BP-4801-01 18 57013225 57013225 T C LMAN1 Missense_Mutation p.E294G 0.27 deleterious(0.03) possibly_damaging(0.77) TCGA-BP-4801-01 19 13566012 13566013 AT - CACNA1A Frame_Shift_Del p.M103Dfs*20 0.27 TCGA-BP-4801-01 19 19014155 19014155 G A COPE Silent p.L219L 0.22 TCGA-BP-4801-01 19 36728127 36728127 A T ZNF146 Missense_Mutation p.H262L 0.04 deleterious(0) probably_damaging(0.997) TCGA-BP-4801-01 19 43415010 43415010 G A PSG6 Missense_Mutation p.S143L 0.19 tolerated(0.91) benign(0) TCGA-BP-4801-01 1 190067930 190067930 G A BRINP3 Nonsense_Mutation p.R507* 0.17 TCGA-BP-4801-01 1 192150572 192150572 C G RGS18 Missense_Mutation p.T145S 0.14 tolerated(0.78) benign(0) TCGA-BP-4801-01 1 47725984 47725984 A C STIL Missense_Mutation p.N1019K 0.19 tolerated(0.1) benign(0.093) TCGA-BP-4801-01 1 54433413 54433413 T A LRRC42 Missense_Mutation p.L363H 0.20 deleterious(0) probably_damaging(1) TCGA-BP-4801-01 20 33703674 33703674 A C EDEM2 Silent p.T433T 0.10 TCGA-BP-4801-01 20 36869596 36869596 C A KIAA1755 Nonsense_Mutation p.E313* 0.27 TCGA-BP-4801-01 21 35890360 35890360 T C RCAN1 3'UTR 0.06 TCGA-BP-4801-01 22 17672628 17672628 A C CECR1 Missense_Mutation p.F276V 0.18 deleterious(0) probably_damaging(0.996) TCGA-BP-4801-01 22 29686417 29686417 C A EWSR1 Intron 0.19 TCGA-BP-4801-01 22 50191673 50191673 C G BRD1 Missense_Mutation p.E626D 0.23 tolerated(0.64) benign(0.008) TCGA-BP-4801-01 2 120720267 120720267 G T PTPN4 Nonsense_Mutation p.E786* 0.22 TCGA-BP-4801-01 2 128262532 128262532 T A IWS1 Missense_Mutation p.E316V 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BP-4801-01 2 128262533 128262533 C A IWS1 Nonsense_Mutation p.E316* 0.21 TCGA-BP-4801-01 2 171686107 171686107 C T GAD1 Missense_Mutation p.R90C 0.05 deleterious(0.01) possibly_damaging(0.518) TCGA-BP-4801-01 2 179604751 179604751 C G TTN Missense_Mutation p.L4403F 0.08 TCGA-BP-4801-01 2 220115231 220115231 A C TUBA4A Missense_Mutation p.L397R 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BP-4801-01 2 233709100 233709100 A - GIGYF2 Frame_Shift_Del p.I1062Lfs*9 0.11 TCGA-BP-4801-01 2 239233980 239233980 T C TRAF3IP1 Missense_Mutation p.Y53H 0.24 deleterious(0) probably_damaging(0.924) TCGA-BP-4801-01 3 186256604 186256604 A T CRYGS Missense_Mutation p.Y140N 0.37 deleterious(0) possibly_damaging(0.891) TCGA-BP-4801-01 3 52696148 52696148 C A PBRM1 Splice_Site p.X176_splice 0.31 TCGA-BP-4801-01 4 148861022 148861022 G C ARHGAP10 Missense_Mutation p.K425N 0.21 deleterious(0) possibly_damaging(0.506) TCGA-BP-4801-01 4 47880552 47880552 C A NFXL1 Missense_Mutation p.G690V 0.24 tolerated(0.17) benign(0.001) TCGA-BP-4801-01 4 68547886 68547886 G A UBA6 Silent p.A60A 0.25 TCGA-BP-4801-01 5 139917834 139917836 GGA - ANKHD1 In_Frame_Del p.D2465del 0.17 TCGA-BP-4801-01 5 179745930 179745930 A G GFPT2 Missense_Mutation p.V274A 0.06 deleterious(0.01) possibly_damaging(0.696) TCGA-BP-4801-01 5 6372588 6372588 G A MED10 3'UTR 0.19 TCGA-BP-4801-01 6 160174528 160174528 G A WTAP Missense_Mutation p.M163I 0.20 deleterious(0.02) benign(0.187) TCGA-BP-4801-01 6 27115055 27115055 G A HIST1H2AH Missense_Mutation p.V50M 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BP-4801-01 6 32974563 32974563 C A HLA-DOA 3'UTR 0.10 TCGA-BP-4801-01 6 33411625 33411625 A G SYNGAP1 Missense_Mutation p.Y1099C 0.19 tolerated(0.16) probably_damaging(0.956) TCGA-BP-4801-01 6 56500387 56500387 C A DST Missense_Mutation p.M525I 0.14 possibly_damaging(0.885) TCGA-BP-4801-01 6 97063550 97063550 G A FHL5 Missense_Mutation p.G253R 0.19 tolerated(0.2) benign(0.017) TCGA-BP-4801-01 7 38429478 38429478 G A AMPH Missense_Mutation p.A636V 0.20 tolerated(0.13) probably_damaging(0.995) TCGA-BP-4801-01 8 139165076 139165076 C A FAM135B Missense_Mutation p.A548S 0.22 tolerated(0.08) benign(0.024) TCGA-BP-4801-01 8 71069452 71069452 T - NCOA2 Frame_Shift_Del p.N383Ifs*4 0.25 TCGA-BP-4801-01 9 117139683 117139683 T A AKNA Missense_Mutation p.E135V 0.22 deleterious(0) possibly_damaging(0.649) TCGA-BP-4801-01 9 136313849 136313849 G C ADAMTS13 Missense_Mutation p.R954P 0.26 tolerated(0.08) possibly_damaging(0.818) TCGA-BP-4801-01 9 304680 304680 G A DOCK8 Silent p.L168L 0.24 TCGA-BP-4801-01 9 78601100 78601100 A C PCSK5 Missense_Mutation p.D117A 0.19 tolerated(0.15) benign(0.114) TCGA-BP-4801-01 X 153762612 153762612 C A G6PD Missense_Mutation p.Q225H 0.46 deleterious(0.01) probably_damaging(1) TCGA-BP-4960-01 10 89550085 89550085 G T ATAD1 Missense_Mutation p.L122I 0.10 deleterious(0) probably_damaging(0.998) TCGA-BP-4960-01 10 91528517 91528517 A C KIF20B Missense_Mutation p.K1665T 0.27 deleterious(0.01) possibly_damaging(0.798) TCGA-BP-4960-01 11 113857420 113857420 C T HTR3A Missense_Mutation p.P302S 0.13 deleterious(0) probably_damaging(1) TCGA-BP-4960-01 11 281411 281411 C T NLRP6 Silent p.I559I 0.41 TCGA-BP-4960-01 11 57068043 57068043 C A TNKS1BP1 Missense_Mutation p.A1721S 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-BP-4960-01 11 57563067 57563067 T G CTNND1 Missense_Mutation p.Y96D 0.36 tolerated(0.17) possibly_damaging(0.67) TCGA-BP-4960-01 11 64428577 64428577 G C NRXN2 Missense_Mutation p.F611L 0.14 deleterious(0) benign(0.028) TCGA-BP-4960-01 12 46321525 46321525 C G SCAF11 Silent p.G653G 0.06 TCGA-BP-4960-01 13 26104186 26104186 C G ATP8A2 Missense_Mutation p.Q91E 0.21 deleterious(0) probably_damaging(0.998) TCGA-BP-4960-01 14 24901665 24901665 T A KHNYN Missense_Mutation p.W400R 0.26 tolerated(0.47) possibly_damaging(0.678) TCGA-BP-4960-01 14 69349271 69349271 C G ACTN1 Silent p.T619T 0.28 TCGA-BP-4960-01 14 93709191 93709191 G C BTBD7 Missense_Mutation p.P943A 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BP-4960-01 15 63125718 63125718 C A TLN2 Missense_Mutation p.L2340M 0.09 tolerated(0.1) possibly_damaging(0.688) TCGA-BP-4960-01 15 66797733 66797733 A C ZWILCH Intron 0.42 TCGA-BP-4960-01 15 68596122 68596122 C T ITGA11 Silent p.L1161L 0.11 TCGA-BP-4960-01 16 14234406 14234406 T G MKL2 5'UTR 0.28 TCGA-BP-4960-01 16 67264329 67264329 A G FHOD1 Missense_Mutation p.L980P 0.13 deleterious(0.02) possibly_damaging(0.627) TCGA-BP-4960-01 17 26086097 26086097 T C NOS2 Missense_Mutation p.Y1055C 0.33 deleterious(0) probably_damaging(0.994) TCGA-BP-4960-01 17 5086351 5086351 C T ZNF594 Missense_Mutation p.E401K 0.23 deleterious(0.03) benign(0.053) TCGA-BP-4960-01 17 65730487 65730487 T A NOL11 Missense_Mutation p.S288T 0.22 tolerated(0.61) possibly_damaging(0.543) TCGA-BP-4960-01 17 73888859 73888859 G A TRIM65 Missense_Mutation p.R163C 0.33 deleterious(0) benign(0.326) TCGA-BP-4960-01 17 9808162 9808162 G A RCVRN Silent p.D112D 0.20 TCGA-BP-4960-01 19 1051287 1051287 C G ABCA7 Missense_Mutation p.L940V 0.34 deleterious(0) probably_damaging(0.968) TCGA-BP-4960-01 19 15586606 15586606 G A PGLYRP2 Missense_Mutation p.P292L 0.11 deleterious(0) probably_damaging(1) TCGA-BP-4960-01 19 18254635 18254635 G T MAST3 Missense_Mutation p.G772V 0.20 tolerated(0.1) benign(0.009) TCGA-BP-4960-01 19 2477619 2477619 A G GADD45B 3'UTR 0.24 TCGA-BP-4960-01 19 42132122 42132123 CC - CEACAM4 Frame_Shift_Del p.A93Rfs*39 0.26 TCGA-BP-4960-01 19 4954476 4954476 G T UHRF1 RNA 0.24 TCGA-BP-4960-01 19 54395811 54395811 G A PRKCG Nonsense_Mutation p.W245* 0.28 TCGA-BP-4960-01 19 55645564 55645564 G C TNNT1 Missense_Mutation p.S207C 0.25 deleterious_low_confidence(0.04) benign(0.108) TCGA-BP-4960-01 19 8322833 8322835 TCT - CERS4 In_Frame_Del p.F273del 0.31 TCGA-BP-4960-01 1 113255367 113255367 A G PPM1J Missense_Mutation p.M243T 0.26 deleterious(0.01) possibly_damaging(0.624) TCGA-BP-4960-01 1 113657274 113657274 C G LRIG2 Missense_Mutation p.S769C 0.22 deleterious(0) probably_damaging(0.984) TCGA-BP-4960-01 1 158670021 158670021 G T OR6K2 Missense_Mutation p.T141N 0.24 tolerated(0.34) benign(0.148) TCGA-BP-4960-01 1 168260459 168260459 C T TBX19 Missense_Mutation p.L89F 0.27 tolerated(1) benign(0.015) TCGA-BP-4960-01 1 171560943 171560943 C A PRRC2C Missense_Mutation p.P2804Q 0.24 probably_damaging(0.994) TCGA-BP-4960-01 1 175365838 175365838 G A TNR Missense_Mutation p.P361L 0.31 deleterious(0) probably_damaging(1) TCGA-BP-4960-01 1 229641823 229641823 G T NUP133 Missense_Mutation p.P89T 0.20 deleterious(0) probably_damaging(0.995) TCGA-BP-4960-01 1 26136292 26136293 CT - SEPN1 Frame_Shift_Del p.F332Rfs*? 0.32 TCGA-BP-4960-01 1 54405733 54405733 A T HSPB11 Missense_Mutation p.L8Q 0.19 deleterious(0) possibly_damaging(0.776) TCGA-BP-4960-01 1 74575231 74575231 C T LRRIQ3 Silent p.V238V 0.23 TCGA-BP-4960-01 1 82408996 82408996 T C LPHN2 Silent p.Y247Y 0.22 TCGA-BP-4960-01 20 49367004 49367004 T C PARD6B Silent p.D366D 0.36 TCGA-BP-4960-01 21 19642252 19642252 T A TMPRSS15 3'UTR 0.23 TCGA-BP-4960-01 22 20130731 20130731 C A ZDHHC8 Missense_Mutation p.S526R 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-BP-4960-01 2 10712145 10712145 A G NOL10 3'UTR 0.28 TCGA-BP-4960-01 2 53956692 53956697 TGTCCA - ASB3 In_Frame_Del p.N157_Q159delinsK 0.19 TCGA-BP-4960-01 2 73717436 73717437 - A ALMS1 Frame_Shift_Ins p.V2784Sfs*8 0.17 TCGA-BP-4960-01 2 9048798 9048798 A C MBOAT2 Silent p.T116T 0.25 TCGA-BP-4960-01 3 10191480 10191480 T C VHL Missense_Mutation p.L158P 0.45 deleterious(0) probably_damaging(0.997) TCGA-BP-4960-01 3 130748629 130748629 C G NEK11 Missense_Mutation p.A26G 0.09 deleterious(0) possibly_damaging(0.839) TCGA-BP-4960-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.36 tolerated(0.44) benign(0.085) TCGA-BP-4960-01 3 52649377 52649377 T - PBRM1 Frame_Shift_Del p.K638Nfs*4 0.34 TCGA-BP-4960-01 3 64589693 64589693 C T ADAMTS9 Missense_Mutation p.D1218N 0.23 deleterious(0.04) benign(0.03) TCGA-BP-4960-01 4 129121753 129121753 C A LARP1B Missense_Mutation p.H748N 0.06 tolerated(0.51) benign(0.225) TCGA-BP-4960-01 4 37845989 37845989 G A PGM2 Missense_Mutation p.V242M 0.15 tolerated(0.13) benign(0.067) TCGA-BP-4960-01 4 83770070 83770070 G T SEC31A Missense_Mutation p.H797N 0.12 deleterious(0.04) benign(0.01) TCGA-BP-4960-01 5 140230065 140230065 C T PCDHA9 Missense_Mutation p.T662M 0.30 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-BP-4960-01 5 16475301 16475302 - A FAM134B Frame_Shift_Ins p.S348Ffs*14 0.12 TCGA-BP-4960-01 5 173372085 173372085 A G CPEB4 Silent p.R466R 0.25 TCGA-BP-4960-01 5 41794778 41794778 C G OXCT1 Splice_Site p.X391_splice 0.14 TCGA-BP-4960-01 5 50685624 50685624 C T ISL1 Missense_Mutation p.A208V 0.08 deleterious(0) probably_damaging(0.938) TCGA-BP-4960-01 5 54456928 54456928 T G GPX8 Missense_Mutation p.L104W 0.33 deleterious(0) probably_damaging(1) TCGA-BP-4960-01 5 89941846 89941846 T G GPR98 Missense_Mutation p.V987G 0.18 benign(0.081) TCGA-BP-4960-01 6 112471821 112471821 C T LAMA4 Missense_Mutation p.E689K 0.11 tolerated(0.79) benign(0.114) TCGA-BP-4960-01 6 161139402 161139402 T A PLG Silent p.A288A 0.31 TCGA-BP-4960-01 6 22569865 22569865 G T HDGFL1 Missense_Mutation p.G21C 0.27 deleterious(0) probably_damaging(1) TCGA-BP-4960-01 6 31759510 31759510 G A VARS Missense_Mutation p.P326L 0.05 tolerated(0.07) benign(0.034) TCGA-BP-4960-01 6 86258079 86258079 A T SNX14 Silent p.L269L 0.11 TCGA-BP-4960-01 7 134928142 134928142 C T STRA8 Silent p.S133S 0.41 TCGA-BP-4960-01 7 94059617 94059617 G A COL1A2 Missense_Mutation p.R1338H 0.10 unknown(0) TCGA-BP-4960-01 8 23711931 23711931 C T STC1 Missense_Mutation p.A36T 0.06 tolerated(0.55) benign(0.062) TCGA-BP-4960-01 8 28214212 28214212 A G ZNF395 Silent p.P186P 0.42 TCGA-BP-4960-01 8 48874107 48874107 T A MCM4 Silent p.S34S 0.41 TCGA-BP-4960-01 8 67357547 67357547 A - ADHFE1 Frame_Shift_Del p.N150Ifs*12 0.33 TCGA-BP-4960-01 9 35450233 35450233 A T ATP8B5P RNA 0.31 TCGA-BP-4960-01 9 4576614 4576614 C G SLC1A1 Missense_Mutation p.N348K 0.29 tolerated(0.11) possibly_damaging(0.697) TCGA-BP-4960-01 9 73477850 73477850 C A TRPM3 Nonsense_Mutation p.G146* 0.20 TCGA-BP-4960-01 9 79118325 79118325 A G GCNT1 Missense_Mutation p.D343G 0.22 deleterious(0) probably_damaging(1) TCGA-BP-4960-01 X 132437029 132437029 A C GPC4 Missense_Mutation p.Y513D 0.61 tolerated(0.15) benign(0.029) TCGA-BP-4961-01 10 118464696 118464696 A G HSPA12A Missense_Mutation p.F74L 0.18 deleterious(0.04) probably_damaging(0.919) TCGA-BP-4961-01 10 120353582 120353582 G T PRLHR 3'UTR 0.23 TCGA-BP-4961-01 10 91476196 91476196 T C KIF20B Missense_Mutation p.L315P 0.20 deleterious(0) probably_damaging(0.999) TCGA-BP-4961-01 10 99120376 99120376 C A RRP12 Splice_Site p.X1190_splice 0.25 TCGA-BP-4961-01 11 3150289 3150289 C T OSBPL5 Silent p.R30R 0.25 TCGA-BP-4961-01 11 45832463 45832463 C A SLC35C1 Missense_Mutation p.D224E 0.06 tolerated(0.19) benign(0.082) TCGA-BP-4961-01 11 63668343 63668343 G A MARK2 Missense_Mutation p.R327Q 0.28 deleterious(0.03) benign(0.095) TCGA-BP-4961-01 11 65637667 65637667 C T EFEMP2 Missense_Mutation p.V178M 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-BP-4961-01 11 82877718 82877718 T C PCF11 Silent p.S593S 0.22 TCGA-BP-4961-01 13 32527560 32527560 C T EEF1DP3 RNA 0.34 TCGA-BP-4961-01 15 35274804 35274804 A T ZNF770 Missense_Mutation p.S278T 0.17 tolerated(0.16) benign(0.008) TCGA-BP-4961-01 15 72300251 72300251 G C MYO9A Missense_Mutation p.I432M 0.18 deleterious(0) probably_damaging(0.965) TCGA-BP-4961-01 15 89395179 89395179 T A ACAN Silent p.T727T 0.21 TCGA-BP-4961-01 15 90340889 90340889 A G ANPEP Missense_Mutation p.Y692H 0.21 deleterious(0) benign(0.405) TCGA-BP-4961-01 16 22162103 22162103 G A VWA3A Missense_Mutation p.V1073I 0.20 tolerated(0.44) benign(0.401) TCGA-BP-4961-01 17 17119744 17119744 A - FLCN Frame_Shift_Del p.F417Sfs*51 0.24 TCGA-BP-4961-01 17 43923077 43923077 C - SPPL2C Frame_Shift_Del p.L269Cfs*66 0.19 TCGA-BP-4961-01 17 7806304 7806304 C T CHD3 Silent p.G1199G 0.09 TCGA-BP-4961-01 18 13826006 13826006 C T MC5R Missense_Mutation p.A81V 0.25 deleterious(0.01) possibly_damaging(0.902) TCGA-BP-4961-01 18 32395872 32395873 - A DTNA Frame_Shift_Ins p.V204Sfs*39 0.29 TCGA-BP-4961-01 18 47808972 47808972 G A CXXC1 Silent p.A658A 0.32 TCGA-BP-4961-01 18 61154215 61154215 G A SERPINB5 Missense_Mutation p.G69R 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-BP-4961-01 19 39964875 39964875 T C SUPT5H Missense_Mutation p.Y885H 0.19 tolerated(0.08) possibly_damaging(0.642) TCGA-BP-4961-01 19 44352238 44352238 C T ZNF283 Silent p.T495T 0.04 TCGA-BP-4961-01 19 7075062 7075062 C T ZNF557 5'UTR 0.26 TCGA-BP-4961-01 1 112524490 112524490 C T KCND3 Missense_Mutation p.V287I 0.16 tolerated(0.07) benign(0.312) TCGA-BP-4961-01 1 120307117 120307117 C A HMGCS2 Silent p.V79V 0.23 TCGA-BP-4961-01 1 197169423 197169423 T C ZBTB41 Missense_Mutation p.R61G 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.631) TCGA-BP-4961-01 1 28835180 28835180 T C SNORA73B RNA 0.04 TCGA-BP-4961-01 1 32127959 32127959 C A COL16A1 Silent p.G1219G 0.11 TCGA-BP-4961-01 1 62349973 62349973 G C INADL Missense_Mutation p.R1008S 0.03 tolerated(0.38) benign(0.01) TCGA-BP-4961-01 1 75037720 75037720 C T C1orf173 Missense_Mutation p.G1225E 0.19 tolerated(0.23) benign(0.083) TCGA-BP-4961-01 1 94343391 94343391 G T DNTTIP2 Missense_Mutation p.H34N 0.22 deleterious(0.05) benign(0.015) TCGA-BP-4961-01 20 30028442 30028442 T A DEFB123 5'UTR 0.06 TCGA-BP-4961-01 22 50752245 50752245 T G DENND6B Missense_Mutation p.K401Q 0.28 deleterious(0.02) possibly_damaging(0.796) TCGA-BP-4961-01 2 120690059 120690060 - A PTPN4 Frame_Shift_Ins p.I378Nfs*3 0.22 TCGA-BP-4961-01 2 128757921 128757921 G A SAP130 Missense_Mutation p.A352V 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BP-4961-01 3 13921263 13921263 G T WNT7A Silent p.G17G 0.08 TCGA-BP-4961-01 3 155655512 155655512 G T GMPS 3'UTR 0.14 TCGA-BP-4961-01 3 47957988 47957988 C T MAP4 Silent p.E443E 0.32 TCGA-BP-4961-01 4 119631494 119631494 C A METTL14 3'UTR 0.39 TCGA-BP-4961-01 4 94751143 94751143 G A ATOH1 3'UTR 0.18 TCGA-BP-4961-01 5 127466804 127466804 G T SLC12A2 Missense_Mutation p.G365V 0.16 deleterious(0) probably_damaging(1) TCGA-BP-4961-01 5 132585226 132585226 A G FSTL4 Missense_Mutation p.V257A 0.16 tolerated(0.12) possibly_damaging(0.734) TCGA-BP-4961-01 5 140710369 140710369 G T PCDHGA1 Missense_Mutation p.D40Y 0.06 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BP-4961-01 5 86682708 86682712 AGATG - RASA1 Frame_Shift_Del p.D972Tfs*6 0.12 TCGA-BP-4961-01 7 130295934 130295934 A G COPG2 Silent p.L209L 0.21 TCGA-BP-4961-01 7 151851228 151851228 G T KMT2C Nonsense_Mutation p.S4048* 0.15 TCGA-BP-4961-01 7 78131009 78131010 - C MAGI2 Frame_Shift_Ins p.K284Efs*6 0.25 TCGA-BP-4961-01 7 89866345 89866345 C T STEAP2 3'UTR 0.07 TCGA-BP-4961-01 7 92730525 92730525 G C SAMD9 3'UTR 0.13 TCGA-BP-4961-01 8 145138388 145138388 G C GPAA1 Missense_Mutation p.E117D 0.19 tolerated(0.26) benign(0.406) TCGA-BP-4961-01 9 119802150 119802150 A G ASTN2 Silent p.C406C 0.20 TCGA-BP-4961-01 9 5570162 5570162 C T PDCD1LG2 3'UTR 0.38 TCGA-BP-4962-01 11 114569272 114569272 G A NXPE2 Missense_Mutation p.R213K 0.12 tolerated(0.51) benign(0.047) TCGA-BP-4962-01 11 114569274 114569274 A G NXPE2 Missense_Mutation p.I214V 0.12 tolerated(1) benign(0.005) TCGA-BP-4962-01 11 117052642 117052642 C A SIDT2 Missense_Mutation p.T142N 0.10 deleterious(0.03) benign(0.157) TCGA-BP-4962-01 11 212621 212621 C A RIC8A Missense_Mutation p.P364T 0.07 deleterious(0.04) probably_damaging(0.978) TCGA-BP-4962-01 11 64108611 64108611 C T CCDC88B Missense_Mutation p.P117S 0.14 deleterious(0.02) possibly_damaging(0.492) TCGA-BP-4962-01 12 131438960 131438960 C A GPR133 5'UTR 0.16 TCGA-BP-4962-01 12 23818384 23818384 C T SOX5 Missense_Mutation p.G309R 0.20 deleterious(0.01) probably_damaging(0.953) TCGA-BP-4962-01 12 7647754 7647754 G C CD163 Missense_Mutation p.S448C 0.03 tolerated(0.05) probably_damaging(0.994) TCGA-BP-4962-01 13 50204841 50204841 C T ARL11 Silent p.Y86Y 0.24 TCGA-BP-4962-01 15 41961876 41961876 G - MGA Frame_Shift_Del p.L263* 0.22 TCGA-BP-4962-01 15 89386810 89386810 G A ACAN Missense_Mutation p.V328I 0.24 deleterious(0) unknown(0) TCGA-BP-4962-01 16 51172715 51172716 - A SALL1 Frame_Shift_Ins p.G1140Wfs*35 0.16 TCGA-BP-4962-01 16 67338321 67338321 C T KCTD19 Intron 0.23 TCGA-BP-4962-01 17 2606746 2606746 A T CLUH Missense_Mutation p.V76E 0.18 deleterious(0) possibly_damaging(0.866) TCGA-BP-4962-01 17 78199688 78199688 A G SLC26A11 Missense_Mutation p.H189R 0.16 tolerated(0.08) benign(0.005) TCGA-BP-4962-01 18 55221616 55221616 G T FECH Missense_Mutation p.S324Y 0.08 deleterious(0) possibly_damaging(0.727) TCGA-BP-4962-01 18 6955495 6955495 C T LAMA1 Intron 0.14 TCGA-BP-4962-01 18 8253332 8253332 G A PTPRM Missense_Mutation p.A892T 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-BP-4962-01 19 11618611 11618611 G T ECSIT Missense_Mutation p.P284H 0.14 deleterious(0) probably_damaging(0.997) TCGA-BP-4962-01 19 22154535 22154548 TAAGGTTTGAGGAC - ZNF208 Frame_Shift_Del p.W1096Cfs*4 0.15 TCGA-BP-4962-01 19 45923622 45923622 C T ERCC1 Missense_Mutation p.D129N 0.13 deleterious(0.02) benign(0.357) TCGA-BP-4962-01 1 152800036 152800036 C T LCE1A Missense_Mutation p.P30S 0.06 tolerated_low_confidence(0.89) unknown(0) TCGA-BP-4962-01 1 172113722 172113722 G A DNM3 Intron 0.05 TCGA-BP-4962-01 1 181059036 181059036 C G IER5 3'UTR 0.17 TCGA-BP-4962-01 1 36026446 36026446 G C NCDN Missense_Mutation p.A232P 0.23 deleterious(0.02) possibly_damaging(0.501) TCGA-BP-4962-01 1 8390936 8390936 C T SLC45A1 Silent p.D461D 0.16 TCGA-BP-4962-01 21 31023608 31023608 A T GRIK1 Missense_Mutation p.L262I 0.20 tolerated(0.26) benign(0.39) TCGA-BP-4962-01 21 34011316 34011316 G A SYNJ1 Nonsense_Mutation p.Q1312* 0.14 TCGA-BP-4962-01 2 122273322 122273322 A G CLASP1 Missense_Mutation p.I188T 0.26 tolerated(0.11) benign(0.41) TCGA-BP-4962-01 2 160035470 160035470 C G TANC1 Missense_Mutation p.T769R 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BP-4962-01 2 179452123 179452123 T C TTN Missense_Mutation p.D21272G 0.32 TCGA-BP-4962-01 2 240968847 240968847 A G OR6B2 3'UTR 0.17 TCGA-BP-4962-01 2 44547760 44547760 A G SLC3A1 Missense_Mutation p.I680M 0.05 deleterious(0.04) benign(0.213) TCGA-BP-4962-01 3 10188259 10188260 - T VHL Frame_Shift_Ins p.L135Ffs*9 0.27 TCGA-BP-4962-01 3 119535982 119535982 C T NR1I2 Missense_Mutation p.R449W 0.06 deleterious(0) probably_damaging(0.987) TCGA-BP-4962-01 3 178748683 178748683 A - ZMAT3 Frame_Shift_Del p.P126Qfs*15 0.08 TCGA-BP-4962-01 3 184103856 184103856 T G CHRD Missense_Mutation p.L614R 0.17 deleterious(0) probably_damaging(1) TCGA-BP-4962-01 3 52443892 52443892 C T BAP1 Translation_Start_Site p.M1? 0.21 tolerated(0.15) benign(0.012) TCGA-BP-4962-01 4 23891669 23891669 C T PPARGC1A 5'UTR 0.28 TCGA-BP-4962-01 4 331721 331721 G T ZNF141 5'UTR 0.05 TCGA-BP-4962-01 5 134907481 134907481 G T CXCL14 3'UTR 0.20 TCGA-BP-4962-01 5 147481422 147481422 C A SPINK5 Missense_Mutation p.P461T 0.12 deleterious(0.01) possibly_damaging(0.897) TCGA-BP-4962-01 5 147481423 147481423 C A SPINK5 Missense_Mutation p.P461Q 0.11 deleterious(0) possibly_damaging(0.596) TCGA-BP-4962-01 5 156899742 156899742 C T NIPAL4 Missense_Mutation p.S392L 0.25 deleterious(0.02) benign(0.426) TCGA-BP-4962-01 5 35771808 35771808 A C SPEF2 Missense_Mutation p.K1300T 0.34 tolerated(0.32) probably_damaging(0.995) TCGA-BP-4962-01 5 6611190 6611190 C T NSUN2 Silent p.T368T 0.04 TCGA-BP-4962-01 5 74643063 74643063 C G HMGCR Missense_Mutation p.A162G 0.03 tolerated(0.11) probably_damaging(0.955) TCGA-BP-4962-01 7 48411895 48411895 G A ABCA13 Missense_Mutation p.S3645N 0.20 probably_damaging(1) TCGA-BP-4962-01 7 83590955 83590955 C T SEMA3A Missense_Mutation p.G683E 0.24 tolerated(0.99) benign(0.403) TCGA-BP-4962-01 8 131896814 131896814 T C ADCY8 Missense_Mutation p.H702R 0.05 tolerated(0.51) benign(0.146) TCGA-BP-4962-01 9 136505100 136505100 G A DBH Missense_Mutation p.D158N 0.16 deleterious(0) probably_damaging(1) TCGA-BP-4962-01 9 2056787 2056787 A T SMARCA2 Missense_Mutation p.E430V 0.14 benign(0.403) TCGA-BP-4962-01 X 70511743 70511743 T G NONO Missense_Mutation p.M90R 0.13 deleterious(0) possibly_damaging(0.603) TCGA-BP-4962-01 X 73040547 73040547 A G XIST RNA 0.28 TCGA-BP-4963-01 10 129682022 129682023 - TGCG CLRN3 Frame_Shift_Ins p.I116Tfs*57 0.38 TCGA-BP-4963-01 10 22896899 22896899 C T PIP4K2A Missense_Mutation p.R99H 0.37 deleterious(0.03) possibly_damaging(0.867) TCGA-BP-4963-01 11 124134972 124134973 - T OR8G5 Frame_Shift_Ins p.G85Wfs*21 0.23 TCGA-BP-4963-01 11 60265040 60265040 C A MS4A12 Missense_Mutation p.N83K 0.22 tolerated(0.27) benign(0.001) TCGA-BP-4963-01 11 60658695 60658695 G A PRPF19 Silent p.H486H 0.20 TCGA-BP-4963-01 12 10772767 10772767 G C STYK1 Silent p.L415L 0.38 TCGA-BP-4963-01 12 117448166 117448166 G A FBXW8 Silent p.L426L 0.09 TCGA-BP-4963-01 12 117448167 117448167 A C FBXW8 Missense_Mutation p.K427Q 0.08 tolerated(0.3) benign(0.159) TCGA-BP-4963-01 12 34178892 34178892 G A ALG10 Missense_Mutation p.G155E 0.19 deleterious(0) probably_damaging(1) TCGA-BP-4963-01 12 7301668 7301668 C A CLSTN3 Missense_Mutation p.H650N 0.17 tolerated(0.15) benign(0.005) TCGA-BP-4963-01 13 32911477 32911477 A T BRCA2 Silent p.G995G 0.23 TCGA-BP-4963-01 13 52539139 52539139 G T ATP7B Missense_Mutation p.H580N 0.17 tolerated(0.2) probably_damaging(1) TCGA-BP-4963-01 13 53422672 53422672 C T PCDH8 5'UTR 0.46 TCGA-BP-4963-01 14 106090903 106090903 C T IGHG4 Silent p.Q298Q 0.18 TCGA-BP-4963-01 14 21238699 21238699 C T EDDM3B Silent p.D130D 0.17 TCGA-BP-4963-01 14 73746101 73746101 A G NUMB Silent p.L376L 0.19 TCGA-BP-4963-01 14 88477438 88477438 T G GPR65 Missense_Mutation p.S83A 0.21 tolerated(0.1) benign(0.153) TCGA-BP-4963-01 15 101597210 101597210 A T LRRK1 Silent p.R1494R 0.24 TCGA-BP-4963-01 15 45454451 45454451 A T DUOX1 Missense_Mutation p.Q1375L 0.29 deleterious(0.01) probably_damaging(0.973) TCGA-BP-4963-01 15 48779393 48779393 G A FBN1 Silent p.I1156I 0.23 TCGA-BP-4963-01 15 54626051 54626051 G A UNC13C Missense_Mutation p.M1527I 0.33 deleterious_low_confidence(0.03) benign(0.028) TCGA-BP-4963-01 15 72579580 72579580 T A CELF6 Intron 0.23 TCGA-BP-4963-01 16 633428 633428 G T PIGQ Missense_Mutation p.G693C 0.22 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-BP-4963-01 17 1840903 1840903 G T RTN4RL1 Silent p.P71P 0.18 TCGA-BP-4963-01 17 19186717 19186717 G A EPN2 Silent p.Q95Q 0.25 TCGA-BP-4963-01 17 26449740 26449740 T C NLK Silent p.C190C 0.27 TCGA-BP-4963-01 17 31438954 31438961 CAGGTACT - ASIC2 Frame_Shift_Del p.E278Afs*12 0.28 TCGA-BP-4963-01 17 39643672 39643672 C A KRT36 Missense_Mutation p.Q306H 0.14 deleterious(0) probably_damaging(0.998) TCGA-BP-4963-01 17 42477630 42477630 G A GPATCH8 Silent p.G605G 0.33 TCGA-BP-4963-01 17 44144984 44144984 C - KANSL1 Frame_Shift_Del p.G528Vfs*50 0.14 TCGA-BP-4963-01 17 61841511 61841511 G C CCDC47 Missense_Mutation p.L138V 0.30 tolerated(0.08) benign(0.054) TCGA-BP-4963-01 17 76046332 76046332 G A TNRC6C Missense_Mutation p.E397K 0.31 tolerated(0.06) possibly_damaging(0.492) TCGA-BP-4963-01 17 79954308 79954308 G T ASPSCR1 Missense_Mutation p.K173N 0.16 deleterious(0) unknown(0) TCGA-BP-4963-01 18 13681730 13681730 T C FAM210A Missense_Mutation p.Q116R 0.21 deleterious(0.02) probably_damaging(0.96) TCGA-BP-4963-01 19 11129632 11129632 G A SMARCA4 Splice_Site p.X813_splice 0.30 TCGA-BP-4963-01 19 14740973 14740973 T A EMR3 Missense_Mutation p.T564S 0.20 tolerated(0.24) probably_damaging(0.941) TCGA-BP-4963-01 19 2115366 2115366 C T AP3D1 Missense_Mutation p.R734Q 0.19 tolerated(0.32) benign(0.024) TCGA-BP-4963-01 19 2737131 2737131 T - SLC39A3 Frame_Shift_Del p.K42Rfs*26 0.26 TCGA-BP-4963-01 19 39026031 39026031 A G RYR1 Missense_Mutation p.S3839G 0.28 benign(0) TCGA-BP-4963-01 1 113212821 113212821 A G CAPZA1 3'UTR 0.36 TCGA-BP-4963-01 1 145365354 145365354 T G NBPF10 Missense_Mutation p.S3327A 0.17 probably_damaging(0.93) TCGA-BP-4963-01 1 145415671 145415674 TTCT C HFE2 In_Frame_Del p.F164del 0.15 TCGA-BP-4963-01 1 150432593 150432593 C T RPRD2 Missense_Mutation p.T404I 0.36 deleterious_low_confidence(0.02) benign(0.03) TCGA-BP-4963-01 1 153932643 153932643 C T SLC39A1 Silent p.R302R 0.33 TCGA-BP-4963-01 1 156169881 156169881 C A SLC25A44 Silent p.T81T 0.27 TCGA-BP-4963-01 1 160718025 160718025 G A SLAMF7 Missense_Mutation p.V33I 0.23 tolerated(0.47) benign(0.01) TCGA-BP-4963-01 1 167734877 167734877 A C MPZL1 Missense_Mutation p.N50T 0.31 deleterious(0.01) probably_damaging(1) TCGA-BP-4963-01 1 171178243 171178243 G C FMO2 3'UTR 0.22 TCGA-BP-4963-01 1 185267160 185267160 A G IVNS1ABP 3'UTR 0.26 TCGA-BP-4963-01 1 196709894 196709894 A G CFH Silent p.E976E 0.04 TCGA-BP-4963-01 1 248343390 248343390 T A OR2M2 Missense_Mutation p.F35I 0.02 deleterious(0) possibly_damaging(0.693) TCGA-BP-4963-01 1 2541226 2541226 C T MMEL1 Missense_Mutation p.D113N 0.28 tolerated(0.23) benign(0.012) TCGA-BP-4963-01 1 26623424 26623424 C G UBXN11 Missense_Mutation p.V140L 0.28 deleterious(0.02) possibly_damaging(0.468) TCGA-BP-4963-01 1 37941073 37941073 G A ZC3H12A 5'UTR 0.26 TCGA-BP-4963-01 1 66067338 66067338 C T LEPR Missense_Mutation p.H420Y 0.26 deleterious(0.04) probably_damaging(0.992) TCGA-BP-4963-01 1 78601512 78601512 A G GIPC2 3'UTR 0.23 TCGA-BP-4963-01 1 909251 909251 C A PLEKHN1 Silent p.P491P 0.09 TCGA-BP-4963-01 21 34956957 34956957 C T DONSON Missense_Mutation p.A242T 0.23 tolerated(0.43) benign(0.007) TCGA-BP-4963-01 21 38084845 38084845 T A SIM2 Missense_Mutation p.F91I 0.19 deleterious(0) probably_damaging(0.987) TCGA-BP-4963-01 21 45859019 45859019 T A TRPM2 Missense_Mutation p.S1413T 0.19 tolerated(0.52) benign(0.001) TCGA-BP-4963-01 22 35782774 35782781 GAAGAGCT - HMOX1 Frame_Shift_Del p.E81Afs*57 0.11 TCGA-BP-4963-01 2 121747767 121747767 C T GLI2 Missense_Mutation p.S1426L 0.21 tolerated(0.67) benign(0.038) TCGA-BP-4963-01 2 198571443 198571443 G A MARS2 Silent p.P438P 0.30 TCGA-BP-4963-01 2 217280065 217280065 G C SMARCAL1 Missense_Mutation p.S213T 0.27 tolerated(0.51) benign(0.003) TCGA-BP-4963-01 2 225368421 225368421 G C CUL3 Missense_Mutation p.T442R 0.24 tolerated(0.35) benign(0.288) TCGA-BP-4963-01 2 227886850 227886850 C T COL4A4 Missense_Mutation p.R1377Q 0.04 unknown(0) TCGA-BP-4963-01 2 27245101 27245101 G A MAPRE3 Silent p.V5V 0.23 TCGA-BP-4963-01 2 3727474 3727474 T C ALLC Missense_Mutation p.V63A 0.21 deleterious(0) possibly_damaging(0.472) TCGA-BP-4963-01 2 37368712 37368712 C - EIF2AK2 Frame_Shift_Del p.V125Cfs*48 0.18 TCGA-BP-4963-01 2 55825590 55825590 T A SMEK2 Missense_Mutation p.I295F 0.29 deleterious(0.02) benign(0.171) TCGA-BP-4963-01 2 61566797 61566797 A G USP34 Silent p.H840H 0.28 TCGA-BP-4963-01 3 10191508 10191509 GA T VHL Frame_Shift_Del p.S168Afs*2 0.34 TCGA-BP-4963-01 3 112299395 112299396 - A SLC35A5 Frame_Shift_Ins p.R145Afs*25 0.24 TCGA-BP-4963-01 3 126160625 126160625 G A ZXDC Nonsense_Mutation p.Q793* 0.29 TCGA-BP-4963-01 3 134967305 134967305 A T EPHB1 Missense_Mutation p.I882F 0.26 deleterious(0) possibly_damaging(0.676) TCGA-BP-4963-01 3 189604291 189604291 G A TP63 Silent p.Q486Q 0.32 TCGA-BP-4963-01 3 47125643 47125653 AGTTTCTTGGG - SETD2 Frame_Shift_Del p.P1873Nfs*10 0.39 TCGA-BP-4963-01 3 47125664 47125664 T A SETD2 Missense_Mutation p.D1869V 0.35 deleterious(0) possibly_damaging(0.776) TCGA-BP-4963-01 4 100009871 100009871 C G ADH5 5'UTR 0.13 TCGA-BP-4963-01 4 56755100 56755100 T - EXOC1 Splice_Site p.X459_splice 0.18 TCGA-BP-4963-01 4 88986968 88986968 T G PKD2 Missense_Mutation p.D765E 0.03 deleterious(0.02) benign(0.261) TCGA-BP-4963-01 5 134126242 134126242 G A DDX46 Silent p.Q542Q 0.17 TCGA-BP-4963-01 5 135416288 135416288 G C VTRNA2-1 5'Flank 0.26 TCGA-BP-4963-01 5 141337417 141337417 G T PCDH12 5'UTR 0.16 TCGA-BP-4963-01 5 156769986 156769986 T C FNDC9 Missense_Mutation p.N187D 0.03 tolerated(0.57) benign(0.001) TCGA-BP-4963-01 5 179147560 179147561 - G CANX Frame_Shift_Ins 0.17 TCGA-BP-4963-01 5 79616823 79616823 G A SPZ1 Silent p.E263E 0.23 TCGA-BP-4963-01 5 82491622 82491623 - A XRCC4 Frame_Shift_Ins p.N118Kfs*4 0.17 TCGA-BP-4963-01 6 155154022 155154022 G T SCAF8 Missense_Mutation p.E1103D 0.36 tolerated_low_confidence(0.83) possibly_damaging(0.84) TCGA-BP-4963-01 6 20144501 20144501 G A MBOAT1 Silent p.I123I 0.23 TCGA-BP-4963-01 6 71571408 71571408 G C B3GAT2 Missense_Mutation p.N310K 0.38 tolerated(0.09) benign(0.132) TCGA-BP-4963-01 7 102982243 102982243 T C DNAJC2 Missense_Mutation p.M75V 0.40 tolerated(0.21) benign(0) TCGA-BP-4963-01 7 131895713 131895713 G T PLXNA4 Missense_Mutation p.Q763K 0.11 deleterious(0.03) possibly_damaging(0.661) TCGA-BP-4963-01 7 146829512 146829512 G A CNTNAP2 Missense_Mutation p.G420D 0.30 deleterious(0.02) benign(0.33) TCGA-BP-4963-01 7 44179950 44179950 G C MYL7 Missense_Mutation p.F90L 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-BP-4963-01 7 780466 780466 C T HEATR2 Missense_Mutation p.A264V 0.17 deleterious(0) benign(0.284) TCGA-BP-4963-01 7 82583794 82583794 G A PCLO Missense_Mutation p.H2159Y 0.20 unknown(0) TCGA-BP-4963-01 8 144671911 144671911 T A EEF1D Missense_Mutation p.D114V 0.21 deleterious(0) possibly_damaging(0.873) TCGA-BP-4963-01 8 144671912 144671912 C T EEF1D Missense_Mutation p.D114N 0.16 tolerated(0.06) benign(0.178) TCGA-BP-4963-01 8 146107815 146107816 - T ZNF250 Frame_Shift_Ins p.C257Vfs*2 0.26 TCGA-BP-4963-01 8 28575522 28575522 A C EXTL3 Missense_Mutation p.E649A 0.23 deleterious(0.02) probably_damaging(0.946) TCGA-BP-4963-01 8 38135924 38135924 T G WHSC1L1 Missense_Mutation p.E1256A 0.23 deleterious(0) probably_damaging(1) TCGA-BP-4963-01 8 61769234 61769234 T C CHD7 Silent p.F2465F 0.22 TCGA-BP-4963-01 8 8185726 8185726 C T SGK223 Missense_Mutation p.D856N 0.23 benign(0.165) TCGA-BP-4963-01 8 8748228 8748228 G T MFHAS1 Silent p.R781R 0.35 TCGA-BP-4963-01 9 340260 340260 C A DOCK8 Missense_Mutation p.P540T 0.23 deleterious(0.01) possibly_damaging(0.821) TCGA-BP-4963-01 9 340261 340261 C A DOCK8 Missense_Mutation p.P540Q 0.24 deleterious(0) probably_damaging(0.972) TCGA-BP-4963-01 X 102004677 102004677 G T BHLHB9 Missense_Mutation p.A252S 0.52 tolerated(0.36) benign(0.043) TCGA-BP-4963-01 X 114880823 114880823 G C PLS3 Silent p.L493L 0.44 TCGA-BP-4963-01 X 49775291 49775291 A C CLCN5 Intron 0.64 TCGA-BP-4963-01 X 54114286 54114286 A G FAM120C Missense_Mutation p.C847R 0.05 deleterious(0) possibly_damaging(0.9) TCGA-BP-4964-01 10 13702514 13702514 G A FRMD4A Missense_Mutation p.S567F 0.37 deleterious(0) possibly_damaging(0.467) TCGA-BP-4964-01 10 29751270 29751271 AG - SVIL Frame_Shift_Del p.L2113Dfs*17 0.09 TCGA-BP-4964-01 10 7605315 7605315 C T ITIH5 Missense_Mutation p.E854K 0.09 tolerated(0.27) benign(0.008) TCGA-BP-4964-01 10 88259648 88259659 TTAATTTTGTAA - WAPAL In_Frame_Del p.N447_I450del 0.15 TCGA-BP-4964-01 11 108236074 108236074 A G ATM Missense_Mutation p.K3004E 0.12 deleterious(0) possibly_damaging(0.517) TCGA-BP-4964-01 11 12518075 12518075 G T PARVA Silent p.L197L 0.36 TCGA-BP-4964-01 11 22646152 22646152 A G FANCF 3'UTR 0.18 TCGA-BP-4964-01 11 61897891 61897891 A T INCENP Missense_Mutation p.T298S 0.26 tolerated(0.74) benign(0.184) TCGA-BP-4964-01 11 61897892 61897892 C T INCENP Missense_Mutation p.T298M 0.26 tolerated(0.11) benign(0.194) TCGA-BP-4964-01 11 77066800 77066800 T C PAK1 Missense_Mutation p.T229A 0.05 tolerated(0.81) benign(0.062) TCGA-BP-4964-01 11 86159278 86159278 T C ME3 Missense_Mutation p.H384R 0.10 tolerated(0.38) benign(0.005) TCGA-BP-4964-01 11 88780709 88780709 T G GRM5 Missense_Mutation p.E111A 0.14 tolerated(0.11) probably_damaging(0.999) TCGA-BP-4964-01 11 94554897 94554897 C G AMOTL1 Silent p.A441A 0.21 TCGA-BP-4964-01 12 102315190 102315190 G A DRAM1 3'UTR 0.14 TCGA-BP-4964-01 12 117710301 117710301 G C NOS1 Silent p.L576L 0.33 TCGA-BP-4964-01 12 1748873 1748873 C T WNT5B Missense_Mutation p.H118Y 0.50 tolerated(1) benign(0) TCGA-BP-4964-01 12 49443747 49443747 G A KMT2D Silent p.I1208I 0.22 TCGA-BP-4964-01 12 57588284 57588284 C A LRP1 Missense_Mutation p.P2689Q 0.05 possibly_damaging(0.729) TCGA-BP-4964-01 12 58204236 58204236 C T AVIL Silent p.L219L 0.08 TCGA-BP-4964-01 12 6602132 6602132 G C MRPL51 Missense_Mutation p.P29R 0.17 tolerated(0.13) benign(0.033) TCGA-BP-4964-01 12 6602137 6602137 A C MRPL51 Silent p.G27G 0.18 TCGA-BP-4964-01 12 67686419 67686419 G A CAND1 Missense_Mutation p.S77N 0.06 tolerated(1) benign(0.001) TCGA-BP-4964-01 14 24675911 24675911 G T TSSK4 Missense_Mutation p.S141I 0.33 deleterious(0.03) probably_damaging(0.945) TCGA-BP-4964-01 14 58724704 58724705 - T PSMA3 Frame_Shift_Ins p.G133Wfs*13 0.28 TCGA-BP-4964-01 14 68038960 68038960 C A PLEKHH1 Nonsense_Mutation p.S565* 0.27 TCGA-BP-4964-01 14 94088745 94088745 C T UNC79 Silent p.D1545D 0.19 TCGA-BP-4964-01 15 36984363 36984363 G T C15orf41 Missense_Mutation p.D155Y 0.20 deleterious(0) possibly_damaging(0.851) TCGA-BP-4964-01 15 42019503 42019503 T - MGA Frame_Shift_Del p.L1186Cfs*13 0.09 TCGA-BP-4964-01 15 65957783 65957783 C T DENND4A Missense_Mutation p.M1752I 0.24 tolerated(0.16) benign(0.003) TCGA-BP-4964-01 16 50402667 50402667 T C BRD7 Missense_Mutation p.K7E 0.22 deleterious(0.04) probably_damaging(0.979) TCGA-BP-4964-01 16 76481968 76481968 T C CNTNAP4 Missense_Mutation p.S175P 0.25 tolerated(0.37) benign(0.005) TCGA-BP-4964-01 17 20150580 20150580 T A SPECC1 Missense_Mutation p.L849Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-BP-4964-01 17 30213014 30213014 C G UTP6 Missense_Mutation p.V230L 0.25 tolerated(0.07) benign(0.003) TCGA-BP-4964-01 17 3921211 3921211 C T ZZEF1 Silent p.R2520R 0.10 TCGA-BP-4964-01 17 4005690 4005690 A G ZZEF1 Silent p.T531T 0.30 TCGA-BP-4964-01 17 44771881 44771881 C G NSF Missense_Mutation p.I409M 0.32 deleterious(0) probably_damaging(0.972) TCGA-BP-4964-01 17 77987209 77987209 C T TBC1D16 Silent p.V46V 0.24 TCGA-BP-4964-01 19 11144146 11144146 C T SMARCA4 Missense_Mutation p.R1243W 0.10 possibly_damaging(0.893) TCGA-BP-4964-01 19 12155240 12155240 A T ZNF878 Missense_Mutation p.F326I 0.27 tolerated(0.1) benign(0.388) TCGA-BP-4964-01 19 42582777 42582777 G C ZNF574 Missense_Mutation p.E7Q 0.15 tolerated(0.21) possibly_damaging(0.727) TCGA-BP-4964-01 19 9066807 9066807 A T MUC16 Missense_Mutation p.M6880K 0.28 unknown(0) TCGA-BP-4964-01 1 113661929 113661929 T C LRIG2 Missense_Mutation p.C919R 0.06 deleterious(0.02) possibly_damaging(0.786) TCGA-BP-4964-01 1 1268364 1268364 A G TAS1R3 Missense_Mutation p.S447G 0.31 tolerated(0.09) benign(0.009) TCGA-BP-4964-01 1 161039395 161039395 C T ARHGAP30 Missense_Mutation p.G7E 0.15 tolerated(0.07) possibly_damaging(0.772) TCGA-BP-4964-01 1 178852665 178852665 G T RALGPS2 Missense_Mutation p.V301L 0.09 tolerated(0.16) benign(0.001) TCGA-BP-4964-01 1 186645102 186645102 G T PTGS2 Nonsense_Mutation p.Y395* 0.09 TCGA-BP-4964-01 1 19480421 19480421 G T UBR4 Silent p.G2157G 0.09 TCGA-BP-4964-01 1 20224088 20224088 G T OTUD3 Missense_Mutation p.G180V 0.37 deleterious(0) probably_damaging(0.973) TCGA-BP-4964-01 1 27121228 27121228 T - PIGV Frame_Shift_Del p.F235Lfs*3 0.20 TCGA-BP-4964-01 1 36230877 36230877 A C CLSPN Missense_Mutation p.D25E 0.25 tolerated(0.19) benign(0.04) TCGA-BP-4964-01 1 39494463 39494463 G T NDUFS5 Missense_Mutation p.G23C 0.28 deleterious(0.01) benign(0.042) TCGA-BP-4964-01 1 45476654 45476654 G C HECTD3 Silent p.A92A 0.41 TCGA-BP-4964-01 1 55317854 55317854 G C DHCR24 3'UTR 0.39 TCGA-BP-4964-01 1 65296679 65296679 C G RAVER2 3'UTR 0.33 TCGA-BP-4964-01 1 76343914 76343914 C A MSH4 Missense_Mutation p.T484N 0.07 tolerated(0.17) benign(0.042) TCGA-BP-4964-01 1 90475839 90475839 T G ZNF326 Missense_Mutation p.S270A 0.30 tolerated(0.31) possibly_damaging(0.746) TCGA-BP-4964-01 20 32344965 32344965 G C ZNF341 Missense_Mutation p.Q251H 0.06 tolerated(0.06) possibly_damaging(0.812) TCGA-BP-4964-01 20 43837138 43837138 T C SEMG1 Silent p.G400G 0.11 TCGA-BP-4964-01 21 46000020 46000020 A G KRTAP10-5 Missense_Mutation p.S146P 0.34 tolerated(0.09) unknown(0) TCGA-BP-4964-01 21 47841950 47841950 G C PCNT Missense_Mutation p.G2364A 0.24 probably_damaging(0.91) TCGA-BP-4964-01 22 30805428 30805428 T A SEC14L2 Missense_Mutation p.F178Y 0.33 tolerated(0.16) possibly_damaging(0.676) TCGA-BP-4964-01 22 39909685 39909685 G A MIEF1 Missense_Mutation p.R250H 0.07 deleterious(0) probably_damaging(0.999) TCGA-BP-4964-01 2 166848925 166848925 A - SCN1A Frame_Shift_Del p.A1622Pfs*3 0.26 TCGA-BP-4964-01 2 175742574 175742574 C A CHN1 Missense_Mutation p.E181D 0.08 tolerated(0.53) benign(0.002) TCGA-BP-4964-01 2 179572409 179572409 C G TTN Missense_Mutation p.E9629Q 0.07 TCGA-BP-4964-01 2 202003449 202003449 T G CFLAR Intron 0.50 TCGA-BP-4964-01 2 207820279 207820279 T A CPO Nonsense_Mutation p.Y86* 0.09 TCGA-BP-4964-01 2 225339013 225339013 T C CUL3 Silent p.E752E 0.07 TCGA-BP-4964-01 2 238277415 238277415 C T COL6A3 Missense_Mutation p.R1564H 0.09 benign(0.023) TCGA-BP-4964-01 2 3727534 3727534 C T ALLC Missense_Mutation p.T83M 0.05 tolerated(0.08) benign(0.254) TCGA-BP-4964-01 2 74907017 74907017 G T SEMA4F Missense_Mutation p.G665V 0.09 tolerated(0.24) benign(0.049) TCGA-BP-4964-01 3 10183763 10183763 A G VHL Missense_Mutation p.N78D 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-BP-4964-01 3 135913893 135913893 G A MSL2 Silent p.D21D 0.26 TCGA-BP-4964-01 3 169496987 169496987 C T MYNN Missense_Mutation p.S233L 0.13 tolerated(0.46) benign(0.007) TCGA-BP-4964-01 3 170078221 170078221 G A SKIL Silent p.T34T 0.16 TCGA-BP-4964-01 3 191087771 191087771 C T CCDC50 Missense_Mutation p.P132S 0.27 tolerated(0.05) probably_damaging(0.983) TCGA-BP-4964-01 3 197707203 197707203 C T LMLN Missense_Mutation p.R186W 0.20 tolerated(0.05) benign(0.063) TCGA-BP-4964-01 3 35770849 35770849 C T ARPP21 Missense_Mutation p.P393L 0.07 tolerated(0.24) benign(0.001) TCGA-BP-4964-01 3 40433646 40433646 G C ENTPD3 Intron 0.45 TCGA-BP-4964-01 3 52597348 52597348 T - PBRM1 Intron 0.16 TCGA-BP-4964-01 3 52651293 52651293 A C PBRM1 Missense_Mutation p.N601K 0.26 deleterious(0) probably_damaging(0.958) TCGA-BP-4964-01 4 1389122 1389122 C T CRIPAK Nonsense_Mutation p.R275* 0.13 TCGA-BP-4964-01 4 39780131 39780131 C A UBE2K 3'UTR 0.38 TCGA-BP-4964-01 4 436954 436954 T G ZNF721 Missense_Mutation p.E434D 0.32 tolerated(0.53) benign(0.003) TCGA-BP-4964-01 4 78792972 78792972 A T MRPL1 Missense_Mutation p.I36F 0.08 tolerated(0.07) benign(0.424) TCGA-BP-4964-01 5 128351731 128351731 G T SLC27A6 Missense_Mutation p.G375W 0.12 deleterious(0) probably_damaging(1) TCGA-BP-4964-01 5 133536031 133536031 T A PPP2CA Missense_Mutation p.M245L 0.06 deleterious(0.05) benign(0.247) TCGA-BP-4964-01 5 36257042 36257042 C T RANBP3L Splice_Site p.X326_splice 0.27 TCGA-BP-4964-01 5 76128711 76128711 C T F2RL1 Silent p.N93N 0.13 TCGA-BP-4964-01 5 85578601 85578601 C A NBPF22P RNA 0.36 TCGA-BP-4964-01 6 158618278 158618278 A C GTF2H5 3'UTR 0.16 TCGA-BP-4964-01 6 24569057 24569057 G T KIAA0319 Missense_Mutation p.Q698K 0.29 deleterious(0.02) benign(0.276) TCGA-BP-4964-01 6 24650952 24650952 C T TDP2 3'UTR 0.42 TCGA-BP-4964-01 6 26638479 26638479 A G ZNF322 Silent p.C101C 0.29 TCGA-BP-4964-01 7 100085830 100085830 G A NYAP1 Silent p.Q162Q 0.30 TCGA-BP-4964-01 7 132193205 132193205 G A PLXNA4 Missense_Mutation p.T83M 0.09 deleterious(0) possibly_damaging(0.76) TCGA-BP-4964-01 7 134849219 134849219 G A TMEM140 Missense_Mutation p.R9H 0.11 tolerated(0.14) possibly_damaging(0.553) TCGA-BP-4964-01 7 138487680 138487680 C T TMEM213 Missense_Mutation p.R64C 0.21 deleterious(0.02) possibly_damaging(0.835) TCGA-BP-4964-01 7 48015247 48015247 C T HUS1 Missense_Mutation p.S168N 0.30 tolerated(0.4) benign(0.007) TCGA-BP-4964-01 7 91974300 91974310 TTGTATGTGCA - ANKIB1 Frame_Shift_Del p.I335Mfs*6 0.27 TCGA-BP-4964-01 8 125989480 125989480 G A ZNF572 Missense_Mutation p.G324R 0.27 tolerated(0.1) probably_damaging(1) TCGA-BP-4964-01 8 141549418 141549418 C T AGO2 Splice_Site p.X723_splice 0.30 TCGA-BP-4964-01 8 141566069 141566069 T C AGO2 Missense_Mutation p.I399V 0.11 tolerated(0.06) benign(0.003) TCGA-BP-4964-01 8 23167334 23167334 T G LOXL2 Missense_Mutation p.E576A 0.11 deleterious(0) probably_damaging(0.995) TCGA-BP-4964-01 8 27362496 27362496 A T EPHX2 Missense_Mutation p.N124Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-BP-4964-01 8 27931901 27931901 G A NUGGC Silent p.G9G 0.07 TCGA-BP-4964-01 9 113168633 113168633 C - SVEP1 Frame_Shift_Del p.E3083Kfs*3 0.32 TCGA-BP-4964-01 9 130207059 130207059 C T ZNF79 Silent p.P360P 0.26 TCGA-BP-4964-01 9 130207060 130207060 T C ZNF79 Missense_Mutation p.Y361H 0.26 deleterious(0.04) possibly_damaging(0.465) TCGA-BP-4964-01 9 17298453 17298453 C A CNTLN Intron 0.31 TCGA-BP-4964-01 9 96214409 96214409 G T FAM120A Missense_Mutation p.W71L 0.36 deleterious(0) benign(0.391) TCGA-BP-4964-01 X 102755009 102755009 A G RAB40A Missense_Mutation p.S226P 0.05 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-BP-4964-01 X 105450813 105450813 G T MUM1L1 Missense_Mutation p.S463I 0.10 tolerated(0.13) possibly_damaging(0.661) TCGA-BP-4964-01 X 140984220 140984220 C A MAGEC3 Intron 0.09 TCGA-BP-4964-01 X 27998267 27998267 G A DCAF8L1 Silent p.C395C 0.09 TCGA-BP-4964-01 X 73063111 73063111 A G XIST RNA 0.29 TCGA-BP-4965-01 10 46111703 46111703 T C ZFAND4 3'UTR 0.22 TCGA-BP-4965-01 10 89712006 89712006 C T PTEN Silent p.G208G 0.23 TCGA-BP-4965-01 10 91405005 91405005 C A PANK1 Missense_Mutation p.G19W 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-BP-4965-01 11 2189843 2189843 C T TH Missense_Mutation p.R153Q 0.24 tolerated(0.18) benign(0.005) TCGA-BP-4965-01 11 2433463 2433463 G T TRPM5 Missense_Mutation p.D792E 0.23 tolerated(0.33) probably_damaging(0.945) TCGA-BP-4965-01 12 110734534 110734534 A T ATP2A2 Missense_Mutation p.E152V 0.20 deleterious(0.01) probably_damaging(0.95) TCGA-BP-4965-01 12 121570799 121570799 A G P2RX7 Missense_Mutation p.D9G 0.27 tolerated(0.21) benign(0.008) TCGA-BP-4965-01 12 123054258 123054258 A C KNTC1 Missense_Mutation p.M583L 0.22 deleterious(0.04) possibly_damaging(0.558) TCGA-BP-4965-01 14 64716381 64716381 C T ESR2 Missense_Mutation p.V370I 0.04 deleterious(0.02) benign(0.084) TCGA-BP-4965-01 15 41624695 41624695 C A OIP5 Missense_Mutation p.G22V 0.26 tolerated_low_confidence(0.07) benign(0.043) TCGA-BP-4965-01 15 44876035 44876035 A G SPG11 Missense_Mutation p.I1948T 0.24 tolerated(0.73) benign(0) TCGA-BP-4965-01 15 52402170 52402170 C - BCL2L10 Frame_Shift_Del p.D164Mfs*29 0.22 TCGA-BP-4965-01 15 65491129 65491129 C A CILP Missense_Mutation p.A499S 0.09 tolerated(0.06) benign(0.009) TCGA-BP-4965-01 15 66645153 66645153 C T TIPIN Missense_Mutation p.E45K 0.25 tolerated(0.07) benign(0.027) TCGA-BP-4965-01 15 89391157 89391157 C T ACAN Silent p.S540S 0.25 TCGA-BP-4965-01 16 24202477 24202477 C G PRKCB Missense_Mutation p.H597D 0.13 deleterious(0) possibly_damaging(0.853) TCGA-BP-4965-01 16 30750345 30750345 C G SRCAP Missense_Mutation p.T2995S 0.21 unknown(0) TCGA-BP-4965-01 16 55855371 55855371 C A CES1 Missense_Mutation p.W201L 0.10 deleterious(0) probably_damaging(1) TCGA-BP-4965-01 16 56704457 56704457 A G MT1H Missense_Mutation p.K23R 0.22 tolerated(0.08) unknown(0) TCGA-BP-4965-01 16 67219061 67219061 C T EXOC3L1 Missense_Mutation p.R576H 0.23 tolerated(0.16) benign(0.103) TCGA-BP-4965-01 16 70866802 70866802 A G HYDIN Silent p.P4616P 0.12 TCGA-BP-4965-01 16 74725180 74725180 G A MLKL Silent p.S239S 0.26 TCGA-BP-4965-01 16 88599110 88599110 G A ZFPM1 Silent p.T345T 0.33 TCGA-BP-4965-01 17 11778481 11778481 C A DNAH9 Silent p.V3486V 0.16 TCGA-BP-4965-01 17 19452976 19452976 A T SLC47A1 Missense_Mutation p.I162F 0.23 deleterious(0) probably_damaging(0.948) TCGA-BP-4965-01 17 5015128 5015128 C T ZNF232 5'UTR 0.06 TCGA-BP-4965-01 17 78350219 78350219 G A RNF213 Missense_Mutation p.S4435N 0.24 benign(0.108) TCGA-BP-4965-01 18 30847243 30847243 C A CCDC178 Missense_Mutation p.V399F 0.21 tolerated(0.72) benign(0.013) TCGA-BP-4965-01 19 15083538 15083538 G C SLC1A6 Missense_Mutation p.T62R 0.07 deleterious(0) probably_damaging(0.998) TCGA-BP-4965-01 19 39916031 39916031 A T PLEKHG2 3'UTR 0.24 TCGA-BP-4965-01 19 51532649 51532649 A G KLK12 Missense_Mutation p.V219A 0.25 deleterious(0.01) possibly_damaging(0.742) TCGA-BP-4965-01 19 9062202 9062202 G C MUC16 Missense_Mutation p.T8415S 0.22 unknown(0) TCGA-BP-4965-01 1 103474038 103474039 - T COL11A1 Frame_Shift_Ins p.S555Kfs*3 0.20 TCGA-BP-4965-01 1 174973869 174973869 A T CACYBP Missense_Mutation p.Q45H 0.27 tolerated(0.05) benign(0.082) TCGA-BP-4965-01 1 43782949 43782949 G C TIE1 Missense_Mutation p.S830T 0.24 tolerated(1) benign(0.063) TCGA-BP-4965-01 1 91784679 91784679 A C HFM1 Missense_Mutation p.L923R 0.22 deleterious(0) probably_damaging(0.999) TCGA-BP-4965-01 22 23029638 23029638 C A IGLV3-25 Missense_Mutation p.F80L 0.24 deleterious(0.01) probably_damaging(0.927) TCGA-BP-4965-01 2 168115152 168115156 ATCAT - XIRP2 3'UTR 0.21 TCGA-BP-4965-01 2 179658188 179658188 T C TTN Silent p.S493S 0.26 TCGA-BP-4965-01 2 225360644 225360645 - TA CUL3 Frame_Shift_Ins p.T583* 0.23 TCGA-BP-4965-01 2 241439472 241439472 C T ANKMY1 Silent p.R814R 0.22 TCGA-BP-4965-01 2 68400546 68400546 T C PNO1 Silent p.L230L 0.24 TCGA-BP-4965-01 2 73868451 73868451 A G NAT8 Missense_Mutation p.L102P 0.25 deleterious(0) probably_damaging(0.971) TCGA-BP-4965-01 2 74185981 74185981 C T DGUOK 3'UTR 0.09 TCGA-BP-4965-01 2 74594532 74594532 G A DCTN1 Missense_Mutation p.H734Y 0.28 tolerated(0.07) probably_damaging(0.999) TCGA-BP-4965-01 3 10188245 10188245 G T VHL Missense_Mutation p.V130F 0.27 deleterious(0) probably_damaging(0.991) TCGA-BP-4965-01 3 139090593 139090593 C T COPB2 Missense_Mutation p.E393K 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-BP-4965-01 3 142177892 142177892 G T ATR Missense_Mutation p.L2471M 0.22 deleterious(0) probably_damaging(1) TCGA-BP-4965-01 3 14712434 14712449 GTCAGATCTCCGGGCT - CCDC174 Frame_Shift_Del p.S380Rfs*75 0.22 TCGA-BP-4965-01 3 38038588 38038588 C T VILL Silent p.S157S 0.31 TCGA-BP-4965-01 3 51265449 51265449 C T DOCK3 Missense_Mutation p.A526V 0.34 deleterious(0.01) possibly_damaging(0.893) TCGA-BP-4965-01 3 53215262 53215262 C T PRKCD Nonsense_Mutation p.Q119* 0.29 TCGA-BP-4965-01 4 89383504 89383504 G A HERC5 Missense_Mutation p.E229K 0.29 tolerated(0.91) benign(0.015) TCGA-BP-4965-01 4 982680 982680 C T SLC26A1 Missense_Mutation p.A683T 0.16 deleterious(0) probably_damaging(1) TCGA-BP-4965-01 5 115423221 115423221 T A COMMD10 Missense_Mutation p.N23K 0.21 deleterious(0.03) possibly_damaging(0.831) TCGA-BP-4965-01 5 32098517 32098517 G A PDZD2 Missense_Mutation p.M2665I 0.18 tolerated(1) benign(0.018) TCGA-BP-4965-01 6 12164458 12164458 G A HIVEP1 Missense_Mutation p.A2641T 0.06 tolerated(0.25) benign(0.009) TCGA-BP-4965-01 6 26273395 26273395 C T HIST1H2BI Silent p.N64N 0.03 TCGA-BP-4965-01 6 30680150 30680150 T C MDC1 Silent p.T523T 0.23 TCGA-BP-4965-01 6 43018715 43018715 A G CUL7 Silent p.P492P 0.25 TCGA-BP-4965-01 6 43156328 43156328 G T CUL9 Silent p.V685V 0.25 TCGA-BP-4965-01 7 100696355 100696355 G - MUC17 Frame_Shift_Del p.V4399Sfs*3 0.22 TCGA-BP-4965-01 7 108155244 108155244 C A PNPLA8 Missense_Mutation p.R231L 0.13 tolerated(0.13) benign(0) TCGA-BP-4965-01 7 65557847 65557847 T A ASL Missense_Mutation p.V448D 0.18 deleterious(0) probably_damaging(0.93) TCGA-BP-4965-01 8 48762023 48762023 C A PRKDC Missense_Mutation p.L2348F 0.22 probably_damaging(0.949) TCGA-BP-4965-01 8 48762043 48762043 C T PRKDC Missense_Mutation p.E2342K 0.26 benign(0.363) TCGA-BP-4965-01 9 113549999 113549999 T A MUSK Missense_Mutation p.F603Y 0.23 tolerated(0.09) benign(0.01) TCGA-BP-4965-01 9 125746779 125746779 A G RABGAP1 Missense_Mutation p.S56G 0.24 tolerated(0.2) benign(0.107) TCGA-BP-4965-01 X 155227310 155227310 C A IL9R 5'UTR 0.19 TCGA-BP-4965-01 X 77369583 77369583 T A PGK1 Missense_Mutation p.S115T 0.51 tolerated(0.23) benign(0.011) TCGA-BP-4967-01 10 103557823 103557823 T C MGEA5 Missense_Mutation p.N633S 0.41 deleterious(0) probably_damaging(0.996) TCGA-BP-4967-01 10 71103744 71103744 T C HK1 Silent p.S79S 0.40 TCGA-BP-4967-01 12 14613557 14613557 G C ATF7IP Missense_Mutation p.A763P 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-BP-4967-01 12 44917251 44917251 C T NELL2 Silent p.G657G 0.51 TCGA-BP-4967-01 12 49425039 49425039 C T KMT2D Silent p.L4483L 0.36 TCGA-BP-4967-01 12 53207945 53207945 G T KRT4 5'UTR 0.42 TCGA-BP-4967-01 12 9305862 9305862 G T PZP Silent p.V1284V 0.08 TCGA-BP-4967-01 13 100622569 100622569 T C ZIC5 Missense_Mutation p.E454G 0.35 deleterious(0) possibly_damaging(0.746) TCGA-BP-4967-01 13 72204836 72204836 G A DACH1 Silent p.A328A 0.39 TCGA-BP-4967-01 14 100166423 100166423 T C CYP46A1 Missense_Mutation p.L143P 0.55 tolerated(1) benign(0) TCGA-BP-4967-01 14 21526326 21526326 G T RNASE8 Missense_Mutation p.S92I 0.68 deleterious(0.01) benign(0.329) TCGA-BP-4967-01 14 64855180 64855180 T A MTHFD1 Missense_Mutation p.I12N 0.70 deleterious(0) benign(0.049) TCGA-BP-4967-01 14 74753229 74753229 G A ABCD4 Missense_Mutation p.H586Y 0.05 deleterious(0) probably_damaging(0.956) TCGA-BP-4967-01 14 77600035 77600035 C G ZDHHC22 Missense_Mutation p.Q261H 0.74 tolerated_low_confidence(0.06) benign(0) TCGA-BP-4967-01 14 94752497 94752497 A G SERPINA10 Missense_Mutation p.F364S 0.07 tolerated(0.58) benign(0) TCGA-BP-4967-01 15 50763851 50763851 A G USP8 Silent p.E236E 0.33 TCGA-BP-4967-01 15 59470597 59470597 C G MYO1E Missense_Mutation p.E682Q 0.41 deleterious(0) probably_damaging(0.966) TCGA-BP-4967-01 16 1747810 1747810 C A HN1L Intron 0.20 TCGA-BP-4967-01 16 1828480 1828480 G A SPSB3 Missense_Mutation p.S87L 0.59 tolerated_low_confidence(0.09) benign(0.01) TCGA-BP-4967-01 16 50745117 50745117 C T NOD2 Missense_Mutation p.A432V 0.21 deleterious(0.02) possibly_damaging(0.686) TCGA-BP-4967-01 16 54319294 54319294 T C IRX3 Missense_Mutation p.T167A 0.22 deleterious(0) probably_damaging(0.997) TCGA-BP-4967-01 16 67979424 67979424 C A SLC12A4 Silent p.L962L 0.23 TCGA-BP-4967-01 17 20130773 20130773 C T SPECC1 Silent p.A637A 0.25 TCGA-BP-4967-01 17 27308944 27308944 A C SEZ6 Missense_Mutation p.F57V 0.29 deleterious_low_confidence(0.05) probably_damaging(0.997) TCGA-BP-4967-01 17 40359718 40359718 A G STAT5B Silent p.P645P 0.31 TCGA-BP-4967-01 17 4577915 4577915 G - PELP1 Frame_Shift_Del p.P491Lfs*7 0.24 TCGA-BP-4967-01 17 8048306 8048306 T A PER1 Missense_Mutation p.I742F 0.36 tolerated(0.11) benign(0.036) TCGA-BP-4967-01 18 13114196 13114196 A C CEP192 Missense_Mutation p.H2412P 0.37 tolerated(0.21) benign(0) TCGA-BP-4967-01 18 24496340 24496340 G T CHST9 Silent p.T405T 0.28 TCGA-BP-4967-01 18 67531478 67531478 A G CD226 3'UTR 0.36 TCGA-BP-4967-01 19 1993133 1993133 C T BTBD2 Silent p.V190V 0.46 TCGA-BP-4967-01 19 39361507 39361507 C T RINL Missense_Mutation p.E243K 0.26 tolerated(0.25) benign(0.008) TCGA-BP-4967-01 19 43358110 43358110 T G PSG10P RNA 0.26 TCGA-BP-4967-01 19 47177890 47177899 CTGCTGCAAA - PRKD2 Frame_Shift_Del p.F840Sfs*61 0.33 TCGA-BP-4967-01 19 57646763 57646763 C T ZIM3 Silent p.K314K 0.22 TCGA-BP-4967-01 1 104297431 104297431 G A AMY1C Missense_Mutation p.G366R 0.09 deleterious(0.05) probably_damaging(0.999) TCGA-BP-4967-01 1 145534208 145534208 G A ITGA10 Silent p.A571A 0.39 TCGA-BP-4967-01 1 165386398 165386398 T C RXRG Missense_Mutation p.R168G 0.42 deleterious(0) probably_damaging(0.995) TCGA-BP-4967-01 1 174245014 174245014 C T RABGAP1L Missense_Mutation p.T366I 0.42 tolerated(0.06) benign(0.348) TCGA-BP-4967-01 1 198687421 198687421 A - PTPRC Frame_Shift_Del p.Y550Sfs*30 0.35 TCGA-BP-4967-01 1 203188874 203188874 T A CHIT1 Missense_Mutation p.D278V 0.45 deleterious(0.03) probably_damaging(0.965) TCGA-BP-4967-01 1 215408257 215408257 G A KCNK2 Silent p.E350E 0.31 TCGA-BP-4967-01 1 27874262 27874262 G A AHDC1 Silent p.H1455H 0.39 TCGA-BP-4967-01 1 32646917 32646917 A C TXLNA Missense_Mutation p.I82L 0.34 deleterious(0) probably_damaging(0.977) TCGA-BP-4967-01 1 36499790 36499790 T G AGO3 Missense_Mutation p.V536G 0.38 deleterious(0) probably_damaging(0.986) TCGA-BP-4967-01 1 42880262 42880262 G C RIMKLA Missense_Mutation p.D265H 0.32 deleterious(0.02) probably_damaging(0.951) TCGA-BP-4967-01 1 93299160 93299160 C A RPL5 Nonsense_Mutation p.Y44* 0.27 TCGA-BP-4967-01 20 1162182 1162183 - G TMEM74B Frame_Shift_Ins p.P28Sfs*43 0.35 TCGA-BP-4967-01 20 33137723 33137723 C A MAP1LC3A 5'UTR 0.50 TCGA-BP-4967-01 22 29196020 29196020 C G XBP1 Intron 0.70 TCGA-BP-4967-01 2 152362014 152362014 T - NEB Frame_Shift_Del p.E7907Gfs*23 0.51 TCGA-BP-4967-01 2 39222302 39222302 C T SOS1 Missense_Mutation p.S1103N 0.74 tolerated(0.28) possibly_damaging(0.491) TCGA-BP-4967-01 2 85828149 85828149 G T TMEM150A Silent p.L65L 0.66 TCGA-BP-4967-01 3 10188263 10188263 T G VHL Missense_Mutation p.F136V 0.75 deleterious(0) probably_damaging(0.988) TCGA-BP-4967-01 3 102153916 102153916 A G ZPLD1 5'UTR 0.04 TCGA-BP-4967-01 3 126260942 126260942 G A CHST13 Missense_Mutation p.A183T 0.11 deleterious(0) probably_damaging(0.971) TCGA-BP-4967-01 3 170244556 170244556 T C SLC7A14 Missense_Mutation p.D57G 0.70 deleterious(0) probably_damaging(1) TCGA-BP-4967-01 4 156281456 156281457 - T MAP9 Frame_Shift_Ins p.S305Kfs*6 0.46 TCGA-BP-4967-01 4 184175071 184175071 A - WWC2 Frame_Shift_Del p.E372Dfs*3 0.44 TCGA-BP-4967-01 5 133996855 133996855 A C SEC24A Missense_Mutation p.Q48H 0.48 deleterious_low_confidence(0.01) benign(0.406) TCGA-BP-4967-01 5 145562154 145562154 C G LARS 5'UTR 0.21 TCGA-BP-4967-01 5 156810297 156810297 T G CYFIP2 Missense_Mutation p.M1020R 0.14 tolerated(0.14) benign(0.035) TCGA-BP-4967-01 5 43543190 43543190 A T PAIP1 Missense_Mutation p.M217K 0.52 deleterious(0.04) possibly_damaging(0.546) TCGA-BP-4967-01 5 52221264 52221264 A T ITGA1 Missense_Mutation p.N854Y 0.28 deleterious(0) probably_damaging(1) TCGA-BP-4967-01 6 17850652 17850652 G C KIF13A Missense_Mutation p.R207G 0.42 deleterious(0) probably_damaging(1) TCGA-BP-4967-01 6 31939426 31939426 T C DXO Silent p.G9G 0.26 TCGA-BP-4967-01 6 34506194 34506194 G A SPDEF Missense_Mutation p.R289W 0.32 deleterious(0) probably_damaging(0.998) TCGA-BP-4967-01 6 36882108 36882108 C A C6orf89 Missense_Mutation p.P158H 0.31 tolerated(0.18) benign(0.045) TCGA-BP-4967-01 6 39304293 39304293 A G KIF6 3'UTR 0.32 TCGA-BP-4967-01 6 71185175 71185175 A G FAM135A Missense_Mutation p.I74V 0.21 deleterious(0.01) possibly_damaging(0.566) TCGA-BP-4967-01 6 72086713 72086719 GTGTAGG A MIR30C2 RNA 0.13 TCGA-BP-4967-01 6 90399594 90399595 - G MDN1 Frame_Shift_Ins p.L3673Pfs*5 0.29 TCGA-BP-4967-01 7 117232369 117232369 G T CFTR Missense_Mutation p.K716N 0.37 tolerated(0.13) benign(0.05) TCGA-BP-4967-01 7 5632985 5632985 C T FSCN1 Missense_Mutation p.P140S 0.38 deleterious(0) probably_damaging(0.997) TCGA-BP-4967-01 8 106813474 106813474 C T ZFPM2 Silent p.S388S 0.60 TCGA-BP-4967-01 8 113277723 113277723 C T CSMD3 Missense_Mutation p.G3202D 0.64 deleterious(0) probably_damaging(0.992) TCGA-BP-4967-01 8 59404310 59404310 A C CYP7A1 Silent p.L413L 0.54 TCGA-BP-4967-01 9 130478287 130478287 G A PTRH1 5'UTR 0.07 TCGA-BP-4967-01 9 90534160 90534161 - TCTTGTCTCCCAGCGTCA SPATA31C1 Intron 0.11 TCGA-BP-4967-01 9 96870182 96870183 - A PTPDC1 Frame_Shift_Ins p.R795Kfs*9 0.42 TCGA-BP-4967-01 X 101912814 101912815 - T GPRASP1 Frame_Shift_Ins p.F1326Lfs*2 0.53 TCGA-BP-4967-01 X 13797994 13797994 G T GPM6B Missense_Mutation p.P214T 0.03 tolerated(0.12) benign(0.102) TCGA-BP-4967-01 X 142717055 142717058 TACT - SLITRK4 Frame_Shift_Del p.I624* 0.83 TCGA-BP-4967-01 X 21667030 21667030 G T CNKSR2 Missense_Mutation p.G925V 0.79 deleterious(0) possibly_damaging(0.703) TCGA-BP-4967-01 X 49179737 49179737 A T GAGE12J Missense_Mutation p.E22V 0.41 deleterious(0) probably_damaging(0.987) TCGA-BP-4967-01 X 75649863 75649863 G T MAGEE1 Nonsense_Mutation p.E514* 0.76 TCGA-BP-4967-01 X 78618083 78618083 G A ITM2A Silent p.L183L 0.87 TCGA-BP-4968-01 10 45959707 45959707 T A MARCH8 Silent p.P74P 0.17 TCGA-BP-4968-01 10 72493772 72493772 G A ADAMTS14 Missense_Mutation p.S450N 0.32 tolerated(0.62) benign(0.009) TCGA-BP-4968-01 11 14852297 14852297 C A PDE3B Missense_Mutation p.Q621K 0.31 tolerated(0.6) benign(0.003) TCGA-BP-4968-01 11 62744739 62744739 A G SLC22A6 Silent p.P494P 0.29 TCGA-BP-4968-01 11 70052630 70052630 T C FADD 3'UTR 0.10 TCGA-BP-4968-01 11 73130927 73130927 G A FAM168A Missense_Mutation p.A90V 0.25 tolerated_low_confidence(0.15) benign(0.018) TCGA-BP-4968-01 12 120741603 120741603 G T SIRT4 Missense_Mutation p.G80V 0.26 deleterious(0) probably_damaging(0.999) TCGA-BP-4968-01 12 53673565 53673565 G T ESPL1 Missense_Mutation p.R805I 0.24 tolerated(0.18) benign(0.025) TCGA-BP-4968-01 12 56437240 56437240 G A RPS26 Missense_Mutation p.R92H 0.04 tolerated(0.08) benign(0.087) TCGA-BP-4968-01 12 7807218 7807218 G A APOBEC1 Silent p.T9T 0.31 TCGA-BP-4968-01 12 97051866 97051866 G T C12orf55 Missense_Mutation p.Q1769H 0.24 tolerated(0.1) benign(0.101) TCGA-BP-4968-01 14 20940624 20940624 C T PNP Missense_Mutation p.P57S 0.26 deleterious(0.02) probably_damaging(0.942) TCGA-BP-4968-01 14 23522709 23522709 T C CDH24 Missense_Mutation p.I408V 0.18 tolerated(1) probably_damaging(0.994) TCGA-BP-4968-01 14 37132609 37132609 C T PAX9 Missense_Mutation p.A171V 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-BP-4968-01 15 56395867 56395867 T A RFX7 Missense_Mutation p.S135C 0.35 deleterious(0) probably_damaging(0.999) TCGA-BP-4968-01 15 77763256 77763256 A G HMG20A Missense_Mutation p.Y152C 0.30 deleterious(0) probably_damaging(0.991) TCGA-BP-4968-01 17 10432798 10432798 G A MYH2 Missense_Mutation p.L1040F 0.23 deleterious(0) probably_damaging(1) TCGA-BP-4968-01 17 11845736 11845736 T A DNAH9 Nonsense_Mutation p.C4259* 0.12 TCGA-BP-4968-01 17 34190556 34190556 G A C17orf66 Missense_Mutation p.T192I 0.23 tolerated(0.06) benign(0.232) TCGA-BP-4968-01 17 34493471 34493471 G A TBC1D3B Silent p.P518P 0.20 TCGA-BP-4968-01 17 40061042 40061042 G T ACLY Silent p.G335G 0.18 TCGA-BP-4968-01 17 40330118 40330118 A G KCNH4 Silent p.N195N 0.23 TCGA-BP-4968-01 17 67302951 67302951 A T ABCA5 Missense_Mutation p.F235I 0.28 deleterious(0) possibly_damaging(0.9) TCGA-BP-4968-01 17 78343583 78343584 - A RNF213 Frame_Shift_Ins p.S4116Ifs*7 0.24 TCGA-BP-4968-01 19 22362673 22362673 G T ZNF676 3'UTR 0.16 TCGA-BP-4968-01 19 50266419 50266419 G A TSKS Missense_Mutation p.S29F 0.17 deleterious(0.04) possibly_damaging(0.653) TCGA-BP-4968-01 19 52856954 52856954 A G ZNF610 Missense_Mutation p.D28G 0.04 deleterious(0) probably_damaging(0.994) TCGA-BP-4968-01 19 7688070 7688070 C G XAB2 Missense_Mutation p.G409R 0.24 deleterious(0.01) possibly_damaging(0.797) TCGA-BP-4968-01 1 12336481 12336481 C T VPS13D Missense_Mutation p.R946C 0.16 possibly_damaging(0.858) TCGA-BP-4968-01 1 214171381 214171381 C T PROX1 Silent p.S501S 0.14 TCGA-BP-4968-01 1 22920118 22920118 C G EPHA8 Silent p.A514A 0.28 TCGA-BP-4968-01 1 231076263 231076263 C A TTC13 Missense_Mutation p.D238Y 0.32 tolerated(0.05) benign(0.325) TCGA-BP-4968-01 1 6532596 6532596 C G PLEKHG5 Silent p.V436V 0.42 TCGA-BP-4968-01 20 44641977 44641977 C - MMP9 Frame_Shift_Del p.T474Lfs*36 0.25 TCGA-BP-4968-01 21 34099147 34099147 G A SYNJ1 Silent p.L59L 0.33 TCGA-BP-4968-01 22 26693016 26693016 G A SEZ6L Missense_Mutation p.G378S 0.29 tolerated(0.41) benign(0.131) TCGA-BP-4968-01 2 43452170 43452170 A G ZFP36L2 Missense_Mutation p.L258P 0.31 deleterious(0.04) possibly_damaging(0.902) TCGA-BP-4968-01 2 74709054 74709054 T G CCDC142 Missense_Mutation p.Q304P 0.35 deleterious(0) possibly_damaging(0.773) TCGA-BP-4968-01 3 10183734 10183734 C A VHL Nonsense_Mutation p.S68* 0.54 TCGA-BP-4968-01 3 122345722 122345722 C T PARP15 Missense_Mutation p.A427V 0.07 deleterious(0) possibly_damaging(0.877) TCGA-BP-4968-01 4 121828700 121828700 C T PRDM5 Missense_Mutation p.G36R 0.31 deleterious(0) probably_damaging(1) TCGA-BP-4968-01 4 139983076 139983076 C T ELF2 Nonsense_Mutation p.W238* 0.28 TCGA-BP-4968-01 4 175896895 175896895 G A ADAM29 Silent p.L73L 0.23 TCGA-BP-4968-01 5 115323525 115323525 C T AQPEP Missense_Mutation p.R332W 0.21 deleterious(0) probably_damaging(0.999) TCGA-BP-4968-01 5 21752149 21752149 T A CDH12 Missense_Mutation p.K694N 0.27 tolerated(0.5) possibly_damaging(0.883) TCGA-BP-4968-01 5 37186442 37186442 A C C5orf42 Missense_Mutation p.L1379V 0.31 deleterious(0.01) benign(0.422) TCGA-BP-4968-01 6 26124127 26124127 A G HIST1H2BC Silent p.P2P 0.29 TCGA-BP-4968-01 6 55216193 55216193 A G GFRAL Missense_Mutation p.I171M 0.03 deleterious(0.04) possibly_damaging(0.685) TCGA-BP-4968-01 7 103777250 103777250 C G ORC5 Missense_Mutation p.D414H 0.10 deleterious(0) probably_damaging(0.973) TCGA-BP-4968-01 7 107834765 107834766 - TA NRCAM Frame_Shift_Ins p.T524Ifs*9 0.26 TCGA-BP-4968-01 7 127013721 127013721 C G ZNF800 Missense_Mutation p.E557Q 0.26 deleterious(0) probably_damaging(0.935) TCGA-BP-4968-01 8 20077883 20077883 A T ATP6V1B2 Missense_Mutation p.E502D 0.40 deleterious(0.02) benign(0.182) TCGA-BP-4968-01 9 139906470 139906470 C T ABCA2 Silent p.L1787L 0.26 TCGA-BP-4968-01 9 91972394 91972394 G A SECISBP2 Missense_Mutation p.A728T 0.32 deleterious(0) probably_damaging(0.992) TCGA-BP-4970-01 10 53458229 53458229 C T CSTF2T Missense_Mutation p.G361S 0.15 deleterious(0.04) probably_damaging(0.994) TCGA-BP-4970-01 11 5687233 5687233 T C TRIM5 Silent p.K282K 0.26 TCGA-BP-4970-01 11 65822560 65822560 C A SF3B2 Missense_Mutation p.P91H 0.22 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-BP-4970-01 12 49396983 49396983 T G PRKAG1 Missense_Mutation p.K287Q 0.19 tolerated(0.06) possibly_damaging(0.657) TCGA-BP-4970-01 12 53516966 53516966 T - SOAT2 Frame_Shift_Del p.V448Sfs*3 0.16 TCGA-BP-4970-01 13 31526903 31526903 G T TEX26 Missense_Mutation p.D85Y 0.17 deleterious(0) probably_damaging(0.957) TCGA-BP-4970-01 13 96589247 96589247 T - UGGT2 Frame_Shift_Del p.E637Nfs*2 0.20 TCGA-BP-4970-01 14 44975908 44975908 C T FSCB Missense_Mutation p.E95K 0.19 tolerated(0.09) possibly_damaging(0.58) TCGA-BP-4970-01 16 84215586 84215586 G A TAF1C Missense_Mutation p.P267L 0.23 deleterious(0.03) probably_damaging(0.994) TCGA-BP-4970-01 17 34182253 34182253 T C C17orf66 Silent p.Q509Q 0.25 TCGA-BP-4970-01 17 45894652 45894652 G A OSBPL7 Silent p.I224I 0.15 TCGA-BP-4970-01 17 48539834 48539834 T C ACSF2 Missense_Mutation p.L227P 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-BP-4970-01 17 56283522 56283522 C T MKS1 Missense_Mutation p.R533H 0.14 tolerated(0.11) benign(0.001) TCGA-BP-4970-01 19 36003526 36003526 T G DMKN Missense_Mutation p.N198T 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-BP-4970-01 19 52519644 52519644 C T ZNF614 Missense_Mutation p.E403K 0.06 deleterious(0.03) probably_damaging(0.996) TCGA-BP-4970-01 19 59060112 59060112 G A TRIM28 Missense_Mutation p.M443I 0.13 tolerated_low_confidence(0.05) benign(0.018) TCGA-BP-4970-01 1 151380970 151380970 G T POGZ Missense_Mutation p.P717T 0.11 tolerated(0.26) benign(0.069) TCGA-BP-4970-01 1 22902833 22902833 C T EPHA8 Missense_Mutation p.R95W 0.06 deleterious(0) probably_damaging(0.989) TCGA-BP-4970-01 20 33225754 33225754 C T PIGU Silent p.Q118Q 0.14 TCGA-BP-4970-01 20 44477168 44477168 G T ACOT8 Missense_Mutation p.Q137K 0.23 deleterious(0.04) benign(0.063) TCGA-BP-4970-01 20 44669098 44669098 C T SLC12A5 Silent p.Y256Y 0.20 TCGA-BP-4970-01 2 18757590 18757590 A G NT5C1B Missense_Mutation p.Y457H 0.26 tolerated(0.13) probably_damaging(0.968) TCGA-BP-4970-01 3 10188321 10188321 G T VHL Splice_Site p.X155_splice 0.15 TCGA-BP-4970-01 3 141161609 141161609 T C ZBTB38 Missense_Mutation p.F127L 0.19 tolerated(0.45) benign(0.419) TCGA-BP-4970-01 3 194081603 194081603 C A LRRC15 Missense_Mutation p.S63I 0.07 tolerated(0.16) benign(0.259) TCGA-BP-4970-01 4 16020105 16020105 G A PROM1 Silent p.H281H 0.14 TCGA-BP-4970-01 4 74021792 74021792 C - ANKRD17 Frame_Shift_Del p.E266Kfs*8 0.10 TCGA-BP-4970-01 4 84216583 84216583 G - HPSE Frame_Shift_Del p.L516Sfs*18 0.11 TCGA-BP-4970-01 5 140176057 140176057 C T PCDHA2 Missense_Mutation p.A503V 0.13 deleterious_low_confidence(0.03) benign(0.237) TCGA-BP-4970-01 6 33173664 33173664 A G HSD17B8 Missense_Mutation p.K209R 0.13 tolerated(0.37) benign(0.012) TCGA-BP-4970-01 6 70733567 70733567 G T COL19A1 Nonsense_Mutation p.E359* 0.22 TCGA-BP-4970-01 7 133059626 133059626 C A EXOC4 Missense_Mutation p.A351D 0.22 tolerated(0.21) possibly_damaging(0.798) TCGA-BP-4970-01 7 156967613 156967613 A G UBE3C Missense_Mutation p.I115V 0.20 tolerated(0.4) benign(0.001) TCGA-BP-4970-01 8 22370886 22370886 T G PPP3CC Missense_Mutation p.N237K 0.35 tolerated(0.09) benign(0.01) TCGA-BP-4970-01 8 98703207 98703207 C G MTDH Missense_Mutation p.T280S 0.19 tolerated(0.3) benign(0.311) TCGA-BP-4971-01 11 26563538 26563538 G T ANO3 Missense_Mutation p.Q359H 0.26 tolerated(0.08) probably_damaging(0.927) TCGA-BP-4971-01 11 66255471 66255471 T A DPP3 Silent p.L220L 0.11 TCGA-BP-4971-01 11 77378304 77378304 C T RSF1 Silent p.R1328R 0.16 TCGA-BP-4971-01 11 85416035 85416035 A C SYTL2 Missense_Mutation p.L1052V 0.18 deleterious(0.01) probably_damaging(0.966) TCGA-BP-4971-01 11 89135577 89135577 A T NOX4 Missense_Mutation p.F255I 0.22 tolerated(0.22) benign(0.004) TCGA-BP-4971-01 12 104186991 104186991 C A NT5DC3 Missense_Mutation p.V324L 0.19 deleterious(0.05) possibly_damaging(0.734) TCGA-BP-4971-01 12 112580008 112580008 A G TRAFD1 Silent p.Q253Q 0.11 TCGA-BP-4971-01 12 52981581 52981581 G - KRT72 Frame_Shift_Del p.L382* 0.21 TCGA-BP-4971-01 12 9321469 9321469 A G PZP Silent p.Y701Y 0.19 TCGA-BP-4971-01 14 20444219 20444219 C T OR4K15 Missense_Mutation p.T181I 0.26 tolerated(0.58) benign(0.013) TCGA-BP-4971-01 15 65255989 65255989 C A SPG21 Missense_Mutation p.S300I 0.15 tolerated_low_confidence(0.1) benign(0.015) TCGA-BP-4971-01 16 15833980 15833980 C T MYH11 Silent p.T982T 0.04 TCGA-BP-4971-01 16 84516270 84516270 C T TLDC1 Silent p.V335V 0.13 TCGA-BP-4971-01 17 30666861 30666861 C A C17orf75 Silent p.G106G 0.16 TCGA-BP-4971-01 18 72346684 72346684 G A ZNF407 Missense_Mutation p.A1237T 0.17 tolerated(0.59) benign(0.001) TCGA-BP-4971-01 18 76753526 76753526 G A SALL3 Nonsense_Mutation p.W512* 0.14 TCGA-BP-4971-01 19 31768041 31768041 C T TSHZ3 Silent p.T886T 0.15 TCGA-BP-4971-01 19 47181735 47181735 G A PRKD2 Silent p.N752N 0.20 TCGA-BP-4971-01 19 53087030 53087030 T C ZNF701 3'UTR 0.12 TCGA-BP-4971-01 19 58723904 58723904 C T ZNF274 Missense_Mutation p.R452C 0.12 tolerated(0.2) benign(0.001) TCGA-BP-4971-01 19 990274 990274 T A WDR18 Silent p.S169S 0.17 TCGA-BP-4971-01 1 13936955 13936955 C T PDPN Missense_Mutation p.A168V 0.17 tolerated(0.2) benign(0.011) TCGA-BP-4971-01 1 175046949 175046949 G A TNN Missense_Mutation p.C132Y 0.20 deleterious(0) probably_damaging(0.96) TCGA-BP-4971-01 1 200817766 200817766 G A CAMSAP2 Missense_Mutation p.M623I 0.15 tolerated(0.19) benign(0.132) TCGA-BP-4971-01 1 200817767 200817767 G T CAMSAP2 Missense_Mutation p.D624Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-BP-4971-01 1 29481370 29481370 C A SRSF4 Missense_Mutation p.R139L 0.07 deleterious(0) probably_damaging(0.922) TCGA-BP-4971-01 20 25656758 25656758 C T ZNF337 Missense_Mutation p.G389E 0.22 deleterious(0.05) probably_damaging(0.931) TCGA-BP-4971-01 20 34843594 34843594 G T AAR2 Missense_Mutation p.W361L 0.16 deleterious(0) probably_damaging(0.951) TCGA-BP-4971-01 20 5924213 5924213 C T TRMT6 Missense_Mutation p.R220Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-BP-4971-01 22 41677122 41677122 C A RANGAP1 5'UTR 0.09 TCGA-BP-4971-01 22 51160606 51160606 G T SHANK3 Missense_Mutation p.A1465S 0.17 possibly_damaging(0.875) TCGA-BP-4971-01 2 233677188 233677188 T C GIGYF2 Silent p.A719A 0.19 TCGA-BP-4971-01 2 237076138 237076138 G A GBX2 Silent p.G159G 0.27 TCGA-BP-4971-01 3 10183783 10183784 - CTGCC VHL Frame_Shift_Ins p.V87Cfs*74 0.17 TCGA-BP-4971-01 3 12949880 12949880 G T IQSEC1 Silent p.L922L 0.08 TCGA-BP-4971-01 3 170584196 170584196 A G RPL22L1 Silent p.D114D 0.28 TCGA-BP-4971-01 3 20153265 20153265 C T KAT2B Silent p.L343L 0.27 TCGA-BP-4971-01 3 67054477 67054477 G T KBTBD8 Missense_Mutation p.M362I 0.25 tolerated(0.53) benign(0.103) TCGA-BP-4971-01 4 20620767 20620767 A G SLIT2 3'UTR 0.31 TCGA-BP-4971-01 4 74283260 74283260 T - ALB Frame_Shift_Del p.Y435Tfs*14 0.15 TCGA-BP-4971-01 4 79369243 79369243 T C FRAS1 Missense_Mutation p.L2016P 0.29 benign(0.048) TCGA-BP-4971-01 5 1282650 1282650 C G TERT Missense_Mutation p.E555Q 0.11 tolerated(0.23) benign(0.317) TCGA-BP-4971-01 5 140201665 140201665 G A PCDHA5 Missense_Mutation p.S102N 0.15 deleterious_low_confidence(0.02) benign(0.054) TCGA-BP-4971-01 5 14711323 14711323 T A ANKH Nonsense_Mutation p.R488* 0.20 TCGA-BP-4971-01 5 74981284 74981284 C A POC5 Missense_Mutation p.K385N 0.17 tolerated(0.06) benign(0) TCGA-BP-4971-01 6 30954884 30954884 G C MUC21 Missense_Mutation p.G311A 0.18 tolerated(0.24) unknown(0) TCGA-BP-4971-01 7 102960089 102960089 T A DNAJC2 Silent p.T403T 0.14 TCGA-BP-4971-01 7 142655413 142655413 G A KEL Missense_Mutation p.P168L 0.15 deleterious(0.02) probably_damaging(0.967) TCGA-BP-4971-01 7 154172047 154172047 A C DPP6 Missense_Mutation p.K128Q 0.10 tolerated(0.11) benign(0.249) TCGA-BP-4971-01 7 38857441 38857441 C A VPS41 Missense_Mutation p.K142N 0.13 deleterious(0) probably_damaging(0.953) TCGA-BP-4971-01 7 97800978 97800978 C - LMTK2 Frame_Shift_Del p.L262Cfs*5 0.34 TCGA-BP-4971-01 7 98601971 98601971 G C TRRAP Missense_Mutation p.A3476P 0.12 probably_damaging(0.999) TCGA-BP-4971-01 9 96002217 96002217 G T WNK2 Missense_Mutation p.D501Y 0.25 unknown(0) TCGA-BP-4971-01 X 1748789 1748789 C T ASMT Silent p.T173T 0.17 TCGA-BP-4971-01 X 23410647 23410647 G C PTCHD1 Splice_Site p.X338_splice 0.37 TCGA-BP-4971-01 X 3228209 3228209 G T MXRA5 Missense_Mutation p.L2679M 0.29 tolerated(0.06) probably_damaging(0.987) TCGA-BP-4972-01 10 132965070 132965070 T A TCERG1L Missense_Mutation p.K312I 0.21 tolerated(0.08) benign(0.008) TCGA-BP-4972-01 10 61830323 61830323 A G ANK3 Missense_Mutation p.M3439T 0.29 benign(0.001) TCGA-BP-4972-01 10 99116876 99116876 T C RRP12 Missense_Mutation p.N1290S 0.20 tolerated(0.81) benign(0.002) TCGA-BP-4972-01 11 16838611 16838611 G A PLEKHA7 Silent p.H534H 0.40 TCGA-BP-4972-01 12 3031528 3031528 T - TULP3 Frame_Shift_Del p.A119Lfs*19 0.32 TCGA-BP-4972-01 12 70965011 70965011 C T PTPRB Silent p.V1055V 0.24 TCGA-BP-4972-01 13 27246116 27246116 G T WASF3 Missense_Mutation p.R177M 0.16 deleterious(0) probably_damaging(0.984) TCGA-BP-4972-01 13 86370342 86370342 G A SLITRK6 Missense_Mutation p.A101V 0.30 tolerated(0.21) benign(0.004) TCGA-BP-4972-01 14 91636352 91636352 G T C14orf159 Missense_Mutation p.G88V 0.28 tolerated(0.12) benign(0.079) TCGA-BP-4972-01 15 101528945 101528945 G A LRRK1 Silent p.P180P 0.34 TCGA-BP-4972-01 15 43552389 43552389 G A TGM5 Silent p.S99S 0.30 TCGA-BP-4972-01 16 31734072 31734072 G T ZNF720 Silent p.L43L 0.07 TCGA-BP-4972-01 16 841179 841179 C A CHTF18 Missense_Mutation p.L305I 0.17 deleterious(0) probably_damaging(0.997) TCGA-BP-4972-01 17 21319191 21319191 C A KCNJ12 Silent p.A179A 0.08 TCGA-BP-4972-01 17 37341384 37341384 C T CACNB1 Silent p.S216S 0.26 TCGA-BP-4972-01 17 79667601 79667601 T C HGS Missense_Mutation p.Y663H 0.41 deleterious(0.03) probably_damaging(0.979) TCGA-BP-4972-01 19 11687390 11687390 G A ACP5 Missense_Mutation p.P135S 0.17 tolerated(0.21) benign(0.009) TCGA-BP-4972-01 19 21300833 21300835 GAA - ZNF714 In_Frame_Del p.E456del 0.15 TCGA-BP-4972-01 1 11190694 11190694 G A MTOR Silent p.A1835A 0.08 TCGA-BP-4972-01 1 155104091 155104091 A G EFNA1 Silent p.G123G 0.20 TCGA-BP-4972-01 1 193150003 193150003 T G B3GALT2 Missense_Mutation p.K230N 0.29 deleterious(0) probably_damaging(1) TCGA-BP-4972-01 1 204971841 204971841 T C NFASC Missense_Mutation p.I1085T 0.34 tolerated(0.15) unknown(0) TCGA-BP-4972-01 1 33234371 33234371 G A KIAA1522 Missense_Mutation p.R194H 0.06 tolerated(0.08) unknown(0) TCGA-BP-4972-01 1 33841143 33841143 C A PHC2 5'UTR 0.32 TCGA-BP-4972-01 1 5934998 5934998 C G NPHP4 Missense_Mutation p.V994L 0.33 deleterious(0.03) benign(0.062) TCGA-BP-4972-01 1 9118229 9118229 A T SLC2A5 Silent p.A38A 0.38 TCGA-BP-4972-01 20 17640771 17640771 G A RRBP1 Missense_Mutation p.P128S 0.06 tolerated(0.24) possibly_damaging(0.803) TCGA-BP-4972-01 20 44236581 44236581 G A WFDC9 3'UTR 0.46 TCGA-BP-4972-01 21 45050261 45050261 G A HSF2BP Silent p.V172V 0.05 TCGA-BP-4972-01 22 45601765 45601765 A C KIAA0930 Missense_Mutation p.V87G 0.37 tolerated(0.14) possibly_damaging(0.474) TCGA-BP-4972-01 2 155555495 155555495 G T KCNJ3 Missense_Mutation p.D70Y 0.28 deleterious(0) possibly_damaging(0.853) TCGA-BP-4972-01 2 219609933 219609934 - T TTLL4 Frame_Shift_Ins p.G590Wfs*5 0.32 TCGA-BP-4972-01 2 48026389 48026389 C A MSH6 Missense_Mutation p.L423I 0.31 tolerated(0.43) probably_damaging(0.997) TCGA-BP-4972-01 3 52360871 52360871 C - DNAH1 Frame_Shift_Del p.H235Mfs*11 0.26 TCGA-BP-4972-01 3 64579996 64579996 C T ADAMTS9 Missense_Mutation p.E1432K 0.46 tolerated(0.29) benign(0.41) TCGA-BP-4972-01 4 108816601 108816601 A - SGMS2 5'UTR 0.13 TCGA-BP-4972-01 4 175443219 175443219 C A HPGD Splice_Site p.X32_splice 0.40 TCGA-BP-4972-01 4 96127874 96127874 G T UNC5C Missense_Mutation p.R603S 0.34 tolerated(0.18) possibly_damaging(0.623) TCGA-BP-4972-01 5 1272327 1272327 C A TERT Silent p.P785P 0.19 TCGA-BP-4972-01 5 140209867 140209867 G A PCDHA6 Missense_Mutation p.A731T 0.34 tolerated_low_confidence(0.14) benign(0.028) TCGA-BP-4972-01 5 40959677 40959677 C T C7 Missense_Mutation p.T539M 0.10 tolerated(0.09) probably_damaging(0.932) TCGA-BP-4972-01 6 13470345 13470345 T C AL583828.1 Silent p.V56V 0.30 TCGA-BP-4972-01 6 34499375 34499375 A C PACSIN1 Splice_Site p.X346_splice 0.35 TCGA-BP-4972-01 6 43395697 43395697 T G ABCC10 Intron 0.18 TCGA-BP-4972-01 6 72974723 72974723 A G RIMS1 Silent p.L1054L 0.41 TCGA-BP-4972-01 7 135261060 135261060 T C NUP205 Missense_Mutation p.L129S 0.36 deleterious(0) probably_damaging(0.999) TCGA-BP-4972-01 7 794385 794385 C T HEATR2 Missense_Mutation p.T395M 0.06 deleterious(0) probably_damaging(0.98) TCGA-BP-4972-01 8 11995803 11995803 C T USP17L2 Missense_Mutation p.G156D 0.30 tolerated(0.61) benign(0.032) TCGA-BP-4972-01 8 33449489 33449489 G T DUSP26 3'UTR 0.34 TCGA-BP-4972-01 9 130486668 130486668 G T TTC16 Intron 0.16 TCGA-BP-4972-01 9 130938657 130938657 G A CIZ1 Missense_Mutation p.P639L 0.27 deleterious(0.03) possibly_damaging(0.519) TCGA-BP-4972-01 9 132397747 132397747 G A NTMT1 3'UTR 0.29 TCGA-BP-4972-01 X 101910199 101910199 G T GPRASP1 Missense_Mutation p.S453I 0.26 tolerated(0.24) benign(0.022) TCGA-BP-4972-01 X 107224290 107224290 C A TEX13B 3'UTR 0.03 TCGA-BP-4972-01 X 107868987 107868987 T G COL4A5 Silent p.P1023P 0.13 TCGA-BP-4972-01 X 114398272 114398272 G T LRCH2 Missense_Mutation p.A477D 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-BP-4972-01 X 129265759 129265759 G A AIFM1 Silent p.P488P 0.25 TCGA-BP-4973-01 10 118321017 118321017 T A PNLIP Missense_Mutation p.N401K 0.28 tolerated(1) benign(0.011) TCGA-BP-4973-01 11 48166268 48166268 G T PTPRJ Missense_Mutation p.D873Y 0.27 deleterious(0) probably_damaging(0.994) TCGA-BP-4973-01 11 50003287 50003287 G C OR4C12 Missense_Mutation p.P251A 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BP-4973-01 11 62489317 62489317 G T HNRNPUL2 Missense_Mutation p.A486D 0.29 deleterious(0) possibly_damaging(0.629) TCGA-BP-4973-01 11 6621304 6621304 G A RRP8 3'UTR 0.23 TCGA-BP-4973-01 13 36220480 36220480 C T NBEA Missense_Mutation p.H2568Y 0.24 deleterious(0) benign(0.424) TCGA-BP-4973-01 15 22928433 22928434 AG - CYFIP1 Frame_Shift_Del p.R104Sfs*14 0.24 TCGA-BP-4973-01 15 48053615 48053615 G T SEMA6D Missense_Mutation p.C145F 0.30 deleterious(0) probably_damaging(1) TCGA-BP-4973-01 16 27715251 27715251 G T KIAA0556 Missense_Mutation p.V441F 0.30 deleterious(0.04) benign(0.235) TCGA-BP-4973-01 16 81077767 81077774 TAAATCAA - ATMIN Frame_Shift_Del p.L555* 0.30 TCGA-BP-4973-01 19 10610395 10610395 A G KEAP1 Silent p.P105P 0.25 TCGA-BP-4973-01 19 44570596 44570596 G A ZNF223 Silent p.K205K 0.42 TCGA-BP-4973-01 19 52216712 52216712 G A HAS1 Missense_Mutation p.R569W 0.38 deleterious(0) unknown(0) TCGA-BP-4973-01 1 154042867 154042867 A C NUP210L Missense_Mutation p.N812K 0.36 deleterious(0) possibly_damaging(0.69) TCGA-BP-4973-01 1 229773797 229773797 C T URB2 Missense_Mutation p.T1146M 0.27 tolerated(0.25) benign(0.001) TCGA-BP-4973-01 1 36564618 36564618 C A COL8A2 Missense_Mutation p.G222W 0.46 deleterious(0.01) unknown(0) TCGA-BP-4973-01 1 94649704 94649707 TACC - ARHGAP29 Splice_Site p.X749_splice 0.38 TCGA-BP-4973-01 20 62038670 62038670 C T KCNQ2 Missense_Mutation p.G649D 0.06 tolerated(0.08) probably_damaging(1) TCGA-BP-4973-01 22 50717397 50717397 G A PLXNB2 Missense_Mutation p.P1478L 0.41 deleterious(0.02) probably_damaging(0.987) TCGA-BP-4973-01 22 50885210 50885210 A G SBF1 3'UTR 0.22 TCGA-BP-4973-01 2 97493923 97493923 C T CNNM3 Missense_Mutation p.P593S 0.08 tolerated(0.07) probably_damaging(0.971) TCGA-BP-4973-01 3 132418875 132418875 G T NPHP3 Missense_Mutation p.L592M 0.35 deleterious(0.02) probably_damaging(0.949) TCGA-BP-4973-01 3 41275110 41275110 A G CTNNB1 Missense_Mutation p.N426D 0.45 deleterious(0) probably_damaging(0.998) TCGA-BP-4973-01 3 5025495 5025495 G A BHLHE40 3'UTR 0.40 TCGA-BP-4973-01 3 52643770 52643770 A G PBRM1 Missense_Mutation p.I709T 0.52 deleterious(0) possibly_damaging(0.493) TCGA-BP-4973-01 4 26426100 26426100 C T RBPJ Silent p.L224L 0.34 TCGA-BP-4973-01 5 140625223 140625223 C T PCDHB15 Missense_Mutation p.A26V 0.23 tolerated_low_confidence(0.23) benign(0.006) TCGA-BP-4973-01 5 160061395 160061395 G A ATP10B Silent p.T449T 0.08 TCGA-BP-4973-01 5 168098202 168098202 C G SLIT3 Splice_Site p.X1376_splice 0.50 TCGA-BP-4973-01 5 169477270 169477270 T A DOCK2 Missense_Mutation p.F1361Y 0.24 deleterious(0) probably_damaging(1) TCGA-BP-4973-01 5 89979836 89979836 G C GPR98 Missense_Mutation p.R2033T 0.25 probably_damaging(0.966) TCGA-BP-4973-01 6 11185683 11185684 - G NEDD9 Frame_Shift_Ins p.R740Afs*80 0.34 TCGA-BP-4973-01 6 138413249 138413263 CAGAAGAAGAAGGCA - PERP In_Frame_Del p.A167_C171del 0.24 TCGA-BP-4973-01 6 44219502 44219503 - C HSP90AB1 Frame_Shift_Ins p.R449Pfs*5 0.25 TCGA-BP-4973-01 6 54173613 54173614 AG - TINAG Frame_Shift_Del p.E90Kfs*3 0.25 TCGA-BP-4973-01 7 128484237 128484237 A G FLNC Missense_Mutation p.K1037E 0.28 tolerated(0.97) possibly_damaging(0.648) TCGA-BP-4973-01 9 117825304 117825304 G A TNC Missense_Mutation p.R1309C 0.29 deleterious(0.04) benign(0.011) TCGA-BP-4974-01 10 124753235 124753235 A G IKZF5 3'UTR 0.16 TCGA-BP-4974-01 11 45948370 45948372 CCA - GYLTL1B In_Frame_Del p.P427del 0.13 TCGA-BP-4974-01 11 47862007 47862007 G C NUP160 Missense_Mutation p.R150G 0.07 tolerated(0.06) benign(0.002) TCGA-BP-4974-01 11 62484638 62484639 - T HNRNPUL2 Frame_Shift_Ins p.C602Mfs*6 0.17 TCGA-BP-4974-01 12 105538541 105538542 CT - KIAA1033 Frame_Shift_Del p.T742Sfs*5 0.11 TCGA-BP-4974-01 12 69756582 69756582 T G YEATS4 Silent p.V22V 0.20 TCGA-BP-4974-01 12 7032057 7032057 G A ENO2 3'UTR 0.11 TCGA-BP-4974-01 12 8211158 8211158 T A C3AR1 3'UTR 0.26 TCGA-BP-4974-01 12 99194855 99194855 C T ANKS1B Missense_Mutation p.A1039T 0.17 deleterious(0.02) benign(0.403) TCGA-BP-4974-01 14 42356908 42356908 C A LRFN5 Silent p.S360S 0.06 TCGA-BP-4974-01 15 33873752 33873752 T C RYR3 Missense_Mutation p.V494A 0.18 benign(0.077) TCGA-BP-4974-01 15 43020179 43020179 C G CDAN1 Missense_Mutation p.C974S 0.06 deleterious(0.01) probably_damaging(0.962) TCGA-BP-4974-01 17 37565879 37565879 G A MED1 Silent p.F865F 0.19 TCGA-BP-4974-01 17 5372140 5372140 G A DHX33 Missense_Mutation p.R14W 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.893) TCGA-BP-4974-01 17 56083160 56083160 A G SRSF1 Splice_Site p.X184_splice 0.05 TCGA-BP-4974-01 17 56428833 56428833 A - SUPT4H1 Frame_Shift_Del p.C36Vfs*7 0.13 TCGA-BP-4974-01 18 23969879 23969879 G A TAF4B Missense_Mutation p.R831K 0.03 deleterious(0.01) possibly_damaging(0.899) TCGA-BP-4974-01 18 50450208 50450208 G A DCC Missense_Mutation p.E277K 0.07 tolerated(0.48) benign(0.013) TCGA-BP-4974-01 19 53385021 53385021 T C ZNF320 Missense_Mutation p.T120A 0.14 tolerated(0.06) benign(0.017) TCGA-BP-4974-01 19 53385022 53385022 C A ZNF320 Missense_Mutation p.L119F 0.14 tolerated(0.12) probably_damaging(0.998) TCGA-BP-4974-01 19 55298028 55298028 A - KIR2DL1 3'Flank 0.18 TCGA-BP-4974-01 1 171753287 171753287 C T METTL13 Silent p.A187A 0.19 TCGA-BP-4974-01 1 171756896 171756896 G A METTL13 Missense_Mutation p.G379R 0.10 deleterious(0.01) possibly_damaging(0.823) TCGA-BP-4974-01 1 210970969 210970969 G A KCNH1 Missense_Mutation p.T599M 0.07 tolerated(0.27) possibly_damaging(0.578) TCGA-BP-4974-01 1 220835248 220835248 A G MARK1 Missense_Mutation p.S710G 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-BP-4974-01 1 236766491 236766491 C T HEATR1 Missense_Mutation p.A110T 0.13 deleterious(0) probably_damaging(1) TCGA-BP-4974-01 1 28060630 28060630 C T FAM76A Missense_Mutation p.P131L 0.18 deleterious(0.03) benign(0.024) TCGA-BP-4974-01 20 32379127 32379127 G A ZNF341 Missense_Mutation p.G783D 0.06 tolerated_low_confidence(0.23) benign(0.144) TCGA-BP-4974-01 22 29834853 29834853 C - RFPL1 Frame_Shift_Del p.L26Wfs*22 0.15 TCGA-BP-4974-01 2 219254723 219254723 C A SLC11A1 Missense_Mutation p.A309D 0.15 deleterious(0.03) probably_damaging(0.984) TCGA-BP-4974-01 2 224463620 224463620 A T SCG2 Silent p.S127S 0.06 TCGA-BP-4974-01 2 79255044 79255044 C A REG3G Missense_Mutation p.L149M 0.19 deleterious(0) probably_damaging(0.995) TCGA-BP-4974-01 3 195016613 195016613 T G ACAP2 Missense_Mutation p.K499T 0.12 deleterious(0) possibly_damaging(0.803) TCGA-BP-4974-01 3 9982650 9982650 G A CRELD1 Missense_Mutation p.G193S 0.12 tolerated(0.76) benign(0.023) TCGA-BP-4974-01 4 141484270 141484270 A T UCP1 Missense_Mutation p.L208I 0.14 tolerated(0.1) probably_damaging(0.996) TCGA-BP-4974-01 4 88106697 88106697 A G KLHL8 Silent p.C157C 0.11 TCGA-BP-4974-01 5 156769839 156769839 C T FNDC9 3'UTR 0.17 TCGA-BP-4974-01 5 174943657 174943658 - TT SFXN1 Frame_Shift_Ins p.L257Ffs*2 0.14 TCGA-BP-4974-01 5 176778599 176778599 A G LMAN2 Missense_Mutation p.L17P 0.13 tolerated_low_confidence(0.28) unknown(0) TCGA-BP-4974-01 6 109484145 109484145 G T CEP57L1 Missense_Mutation p.R452I 0.09 deleterious(0) probably_damaging(0.91) TCGA-BP-4974-01 6 136972151 136972151 A C MAP3K5 Missense_Mutation p.S587A 0.21 deleterious(0.03) possibly_damaging(0.811) TCGA-BP-4974-01 6 161174086 161174086 A G PLG Missense_Mutation p.N809S 0.11 tolerated(0.28) benign(0.001) TCGA-BP-4974-01 6 89891701 89891701 G T GABRR1 Missense_Mutation p.P291H 0.15 deleterious(0) probably_damaging(1) TCGA-BP-4974-01 8 110412378 110412378 T A PKHD1L1 Missense_Mutation p.N362K 0.14 deleterious(0.01) possibly_damaging(0.486) TCGA-BP-4974-01 8 48767813 48767813 C T PRKDC Missense_Mutation p.C2243Y 0.28 probably_damaging(0.986) TCGA-BP-4974-01 9 6330059 6330060 AA G TPD52L3 3'UTR 0.21 TCGA-BP-4974-01 X 24735484 24735484 G A POLA1 Missense_Mutation p.E256K 0.19 tolerated(0.13) benign(0.272) TCGA-BP-4975-01 11 103908554 103908554 T C DDI1 Missense_Mutation p.L335P 0.30 deleterious(0) probably_damaging(0.999) TCGA-BP-4975-01 11 104877972 104877972 C T CASP5 Missense_Mutation p.D104N 0.03 tolerated(1) benign(0.028) TCGA-BP-4975-01 11 123995002 123995002 G A VWA5A Missense_Mutation p.R408K 0.22 tolerated(1) benign(0.004) TCGA-BP-4975-01 11 46782199 46782199 G A CKAP5 Missense_Mutation p.R1453C 0.19 deleterious(0) benign(0) TCGA-BP-4975-01 11 57118271 57118271 C T P2RX3 Silent p.C247C 0.21 TCGA-BP-4975-01 12 109826584 109826584 G A MYO1H Missense_Mutation p.A21T 0.03 tolerated(0.14) possibly_damaging(0.563) TCGA-BP-4975-01 12 14927791 14927791 A T H2AFJ Missense_Mutation p.K129N 0.33 deleterious_low_confidence(0) benign(0.015) TCGA-BP-4975-01 13 46935677 46935677 C G KIAA0226L Missense_Mutation p.E340Q 0.22 deleterious(0.02) possibly_damaging(0.601) TCGA-BP-4975-01 15 101933619 101933619 C - PCSK6 Frame_Shift_Del p.G335Afs*99 0.28 TCGA-BP-4975-01 16 1866933 1866933 G A HAGH Silent p.P236P 0.27 TCGA-BP-4975-01 16 67318759 67318759 G A PLEKHG4 Silent p.L612L 0.11 TCGA-BP-4975-01 1 111860638 111860638 C T CHIA Silent p.Y212Y 0.25 TCGA-BP-4975-01 1 160011200 160011200 G A KCNJ10 Missense_Mutation p.R375C 0.08 deleterious(0) benign(0.04) TCGA-BP-4975-01 1 39781186 39781194 ACACCCAGG - MACF1 In_Frame_Del p.H1096_E1099delinsQ 0.21 TCGA-BP-4975-01 1 43885949 43885949 C T SZT2 Missense_Mutation p.R406W 0.17 deleterious(0) probably_damaging(0.989) TCGA-BP-4975-01 2 162849740 162849740 T G DPP4 3'UTR 0.05 TCGA-BP-4975-01 2 238249678 238249678 A C COL6A3 Silent p.A2627A 0.26 TCGA-BP-4975-01 3 52621433 52621434 CT - PBRM1 Frame_Shift_Del p.S995* 0.30 TCGA-BP-4975-01 5 90025457 90025457 A C GPR98 Splice_Site p.X3476_splice 0.30 TCGA-BP-4975-01 6 155776182 155776182 G A NOX3 Nonsense_Mutation p.R44* 0.29 TCGA-BP-4975-01 6 17828563 17828563 G C KIF13A Missense_Mutation p.I480M 0.23 deleterious(0) probably_damaging(0.999) TCGA-BP-4975-01 6 31932019 31932019 T C SKIV2L Missense_Mutation p.M624T 0.29 deleterious(0) probably_damaging(0.913) TCGA-BP-4975-01 7 2577862 2577862 A G BRAT1 Silent p.P769P 0.09 TCGA-BP-4975-01 9 131256884 131256884 A G ODF2 Silent p.Q616Q 0.23 TCGA-BP-4976-01 10 124399770 124399770 T C DMBT1 Missense_Mutation p.I2257T 0.03 deleterious(0) possibly_damaging(0.762) TCGA-BP-4976-01 10 127824195 127824195 T A ADAM12 Missense_Mutation p.Y128F 0.23 tolerated(0.35) benign(0.022) TCGA-BP-4976-01 10 13386847 13386848 - G SEPHS1 Frame_Shift_Ins p.Q35Pfs*20 0.27 TCGA-BP-4976-01 10 46272804 46272804 G A FAM21C Silent p.V742V 0.24 TCGA-BP-4976-01 10 5436080 5436080 G C TUBAL3 Silent p.A247A 0.07 TCGA-BP-4976-01 10 5967396 5967404 ATTTTGTGA - FBXO18 In_Frame_Del p.D939_K942delinsE 0.38 TCGA-BP-4976-01 10 75520026 75520026 C T SEC24C Silent p.P244P 0.28 TCGA-BP-4976-01 10 7759749 7759749 G C ITIH2 Missense_Mutation p.E210Q 0.34 tolerated(0.29) benign(0.02) TCGA-BP-4976-01 11 119045325 119045325 C T NLRX1 Missense_Mutation p.S338L 0.30 tolerated(0.13) benign(0.003) TCGA-BP-4976-01 11 57571149 57571149 G A CTNND1 Missense_Mutation p.A493T 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-BP-4976-01 11 60714170 60714170 G T SLC15A3 Missense_Mutation p.L228M 0.34 tolerated(0.07) possibly_damaging(0.78) TCGA-BP-4976-01 11 6233063 6233063 G T FAM160A2 Silent p.L878L 0.32 TCGA-BP-4976-01 11 62997084 62997084 C T SLC22A25 Missense_Mutation p.G14E 0.05 deleterious(0) probably_damaging(0.994) TCGA-BP-4976-01 11 64883959 64883959 G - ZNHIT2 Frame_Shift_Del p.V390Cfs*? 0.35 TCGA-BP-4976-01 11 67219269 67219269 C A GPR152 Silent p.V309V 0.35 TCGA-BP-4976-01 11 70201888 70201888 G A PPFIA1 Missense_Mutation p.G820E 0.30 tolerated(0.26) benign(0.043) TCGA-BP-4976-01 11 77314713 77314713 T C AQP11 Silent p.S244S 0.37 TCGA-BP-4976-01 12 107371722 107371722 T C MTERFD3 Silent p.Q257Q 0.28 TCGA-BP-4976-01 12 109186220 109186220 C T SSH1 Missense_Mutation p.G579S 0.38 tolerated_low_confidence(0.06) benign(0.05) TCGA-BP-4976-01 12 110815266 110815266 A T ANAPC7 Nonsense_Mutation p.L464* 0.35 TCGA-BP-4976-01 12 112186993 112186993 C T ACAD10 Silent p.V918V 0.33 TCGA-BP-4976-01 12 46318555 46318555 G T SCAF11 Missense_Mutation p.Q1288K 0.23 deleterious(0) possibly_damaging(0.67) TCGA-BP-4976-01 12 46318557 46318557 T C SCAF11 Missense_Mutation p.Q1287R 0.23 deleterious(0) probably_damaging(0.993) TCGA-BP-4976-01 12 52864378 52864378 C G KRT6C Missense_Mutation p.D372H 0.21 deleterious(0) probably_damaging(0.996) TCGA-BP-4976-01 12 52979562 52979562 C A KRT72 3'UTR 0.50 TCGA-BP-4976-01 12 57112266 57112266 A G NACA Intron 0.21 TCGA-BP-4976-01 12 57626066 57626066 T - SHMT2 Frame_Shift_Del p.Y195* 0.34 TCGA-BP-4976-01 12 66731858 66731858 G A HELB Silent p.K1080K 0.37 TCGA-BP-4976-01 12 6690827 6690827 C T CHD4 Missense_Mutation p.V1557I 0.38 tolerated(0.24) benign(0.005) TCGA-BP-4976-01 12 92818886 92818886 T G CLLU1 3'UTR 0.36 TCGA-BP-4976-01 13 50495711 50495711 A G SPRYD7 Silent p.I132I 0.41 TCGA-BP-4976-01 14 105418187 105418187 A C AHNAK2 Missense_Mutation p.S1201A 0.11 possibly_damaging(0.817) TCGA-BP-4976-01 14 24911963 24911964 - A SDR39U1 Frame_Shift_Ins p.V5Cfs*39 0.20 TCGA-BP-4976-01 14 55004493 55004493 C T CGRRF1 Silent p.C208C 0.23 TCGA-BP-4976-01 14 74489763 74489763 A T CCDC176 Missense_Mutation p.L67F 0.40 deleterious(0.04) possibly_damaging(0.519) TCGA-BP-4976-01 16 15501886 15501886 A T MPV17L Missense_Mutation p.S170C 0.40 deleterious(0.04) benign(0.078) TCGA-BP-4976-01 16 21666709 21666709 T A METTL9 Missense_Mutation p.Y305N 0.27 deleterious(0) possibly_damaging(0.607) TCGA-BP-4976-01 16 48595915 48595918 TGTT - N4BP1 Frame_Shift_Del p.T213Sfs*10 0.35 TCGA-BP-4976-01 17 26940338 26940338 G C SGK494 Missense_Mutation p.S117C 0.29 deleterious(0) probably_damaging(1) TCGA-BP-4976-01 17 42882647 42882647 T A GJC1 Missense_Mutation p.Q180L 0.31 deleterious(0) possibly_damaging(0.901) TCGA-BP-4976-01 17 57262419 57262419 G C PRR11 Missense_Mutation p.G45R 0.33 tolerated(0.23) benign(0.007) TCGA-BP-4976-01 17 8018347 8018347 A C ALOXE3 Missense_Mutation p.C287G 0.36 tolerated(0.36) benign(0) TCGA-BP-4976-01 18 14542952 14542952 C A POTEC Missense_Mutation p.C65F 0.03 deleterious_low_confidence(0) benign(0.308) TCGA-BP-4976-01 18 31324962 31324962 A C ASXL3 Missense_Mutation p.E1717A 0.26 benign(0.113) TCGA-BP-4976-01 18 46474803 46474803 A G SMAD7 Silent p.S206S 0.22 TCGA-BP-4976-01 18 7032162 7032162 C T LAMA1 Missense_Mutation p.G726D 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-BP-4976-01 19 1453570 1453570 C T APC2 Missense_Mutation p.R125W 0.33 probably_damaging(0.984) TCGA-BP-4976-01 19 17972160 17972160 C A RPL18A Missense_Mutation p.P26H 0.55 deleterious(0) probably_damaging(0.948) TCGA-BP-4976-01 19 3533330 3533330 C A FZR1 Silent p.V427V 0.31 TCGA-BP-4976-01 19 42490382 42490382 C A ATP1A3 Splice_Site p.X133_splice 0.39 TCGA-BP-4976-01 19 43999463 43999463 C T PHLDB3 Missense_Mutation p.C327Y 0.33 tolerated(1) benign(0.019) TCGA-BP-4976-01 19 51628430 51628430 A C SIGLEC9 Missense_Mutation p.N67H 0.35 tolerated(0.1) benign(0.033) TCGA-BP-4976-01 19 55512270 55512270 C T NLRP2 3'UTR 0.32 TCGA-BP-4976-01 19 6760899 6760899 C - SH2D3A Frame_Shift_Del p.A57Pfs*40 0.34 TCGA-BP-4976-01 19 7546945 7546945 G T PEX11G Silent p.A134A 0.25 TCGA-BP-4976-01 1 108700179 108700179 C T SLC25A24 Missense_Mutation p.G192R 0.26 deleterious(0) probably_damaging(0.998) TCGA-BP-4976-01 1 110020593 110020593 G C SYPL2 Missense_Mutation p.G204R 0.29 deleterious(0.03) probably_damaging(1) TCGA-BP-4976-01 1 179090792 179090792 C T ABL2 Missense_Mutation p.G300R 0.38 deleterious(0) probably_damaging(1) TCGA-BP-4976-01 1 19488213 19488213 C T UBR4 Missense_Mutation p.C1682Y 0.41 probably_damaging(1) TCGA-BP-4976-01 1 205632093 205632093 C T SLC45A3 Missense_Mutation p.V276M 0.35 deleterious(0.04) benign(0.219) TCGA-BP-4976-01 1 22828055 22828055 A G ZBTB40 Missense_Mutation p.E301G 0.31 tolerated(0.08) benign(0) TCGA-BP-4976-01 1 229738593 229738593 C A TAF5L Silent p.L107L 0.42 TCGA-BP-4976-01 1 235944201 235944201 A - LYST Frame_Shift_Del p.F1726Lfs*2 0.26 TCGA-BP-4976-01 20 21314413 21314413 G C XRN2 Missense_Mutation p.W335C 0.28 deleterious(0) probably_damaging(1) TCGA-BP-4976-01 20 2464152 2464152 C G ZNF343 Missense_Mutation p.R485S 0.41 deleterious(0.02) possibly_damaging(0.634) TCGA-BP-4976-01 20 30919118 30919120 AGT G KIF3B Frame_Shift_Del p.K747R 0.28 TCGA-BP-4976-01 20 36024602 36024602 C A SRC Silent p.A197A 0.39 TCGA-BP-4976-01 20 62729653 62729653 C T OPRL1 Missense_Mutation p.P205L 0.41 deleterious(0.02) probably_damaging(0.988) TCGA-BP-4976-01 20 9495430 9495430 G A LAMP5 5'UTR 0.38 TCGA-BP-4976-01 22 26743810 26743810 G A SEZ6L Missense_Mutation p.V780M 0.28 deleterious(0.03) probably_damaging(1) TCGA-BP-4976-01 22 32188047 32188047 T C DEPDC5 Missense_Mutation p.V218A 0.29 deleterious(0) possibly_damaging(0.481) TCGA-BP-4976-01 22 37420797 37420797 G T MPST Missense_Mutation p.V201L 0.27 tolerated(0.07) benign(0.074) TCGA-BP-4976-01 2 114002144 114002144 C T PAX8 Silent p.V83V 0.04 TCGA-BP-4976-01 2 141032077 141032077 C A LRP1B Missense_Mutation p.G4353V 0.30 probably_damaging(0.953) TCGA-BP-4976-01 2 170863656 170863656 A G UBR3 Missense_Mutation p.I1396V 0.23 tolerated(0.93) benign(0) TCGA-BP-4976-01 2 179437362 179437362 T A TTN Silent p.L24499L 0.32 TCGA-BP-4976-01 2 18113665 18113665 G A KCNS3 Missense_Mutation p.D464N 0.16 tolerated(0.72) benign(0.001) TCGA-BP-4976-01 2 218954028 218954028 A C RUFY4 Missense_Mutation p.E539A 0.27 deleterious(0.04) benign(0) TCGA-BP-4976-01 2 225721605 225721605 G C DOCK10 Missense_Mutation p.L594V 0.56 tolerated(0.09) possibly_damaging(0.529) TCGA-BP-4976-01 2 48687267 48687267 G T PPP1R21 Nonsense_Mutation p.E192* 0.28 TCGA-BP-4976-01 2 89278126 89278126 T C IGKV3-7 Missense_Mutation p.Y70C 0.40 deleterious(0.01) possibly_damaging(0.462) TCGA-BP-4976-01 3 10188300 10188308 TTGCCAATA G VHL Frame_Shift_Del p.F148Cfs*23 0.42 TCGA-BP-4976-01 3 42568970 42568970 C T VIPR1 Missense_Mutation p.A162V 0.72 tolerated(0.88) benign(0.044) TCGA-BP-4976-01 3 9785380 9785380 C G BRPF1 Silent p.G810G 0.82 TCGA-BP-4976-01 4 107252948 107252948 G A AIMP1 Missense_Mutation p.A195T 0.39 deleterious(0.02) possibly_damaging(0.458) TCGA-BP-4976-01 4 57876947 57876947 T G POLR2B Missense_Mutation p.L528V 0.31 deleterious(0) probably_damaging(0.999) TCGA-BP-4976-01 4 59391 59391 C T ZNF595 Silent p.A24A 0.06 TCGA-BP-4976-01 5 134907401 134907401 A G CXCL14 3'UTR 0.22 TCGA-BP-4976-01 5 135385220 135385220 C G TGFBI Missense_Mutation p.I288M 0.40 deleterious(0.04) probably_damaging(0.996) TCGA-BP-4976-01 5 169494675 169494675 C T DOCK2 Silent p.F1543F 0.50 TCGA-BP-4976-01 5 32403288 32403288 G A ZFR Missense_Mutation p.T480I 0.18 tolerated(0.16) unknown(0) TCGA-BP-4976-01 5 35065723 35065723 G A PRLR Missense_Mutation p.A446V 0.48 tolerated(0.34) benign(0.01) TCGA-BP-4976-01 6 138734184 138734184 A - HEBP2 Frame_Shift_Del p.N198Mfs*26 0.28 TCGA-BP-4976-01 6 159659602 159659602 G A FNDC1 Missense_Mutation p.R1362H 0.25 deleterious(0) unknown(0) TCGA-BP-4976-01 6 160461597 160461597 G T IGF2R Missense_Mutation p.D441Y 0.40 deleterious(0.02) probably_damaging(0.981) TCGA-BP-4976-01 6 24205282 24205283 - C DCDC2 Frame_Shift_Ins p.A324Gfs*8 0.29 TCGA-BP-4976-01 6 31504362 31504363 - AG DDX39B Frame_Shift_Ins p.A178* 0.20 TCGA-BP-4976-01 6 35987387 35987387 T A SLC26A8 Missense_Mutation p.E33V 0.39 deleterious(0.03) possibly_damaging(0.52) TCGA-BP-4976-01 6 36742765 36742765 C A CPNE5 Missense_Mutation p.R237I 0.42 tolerated(0.05) probably_damaging(0.999) TCGA-BP-4976-01 6 4032532 4032532 G T PRPF4B Missense_Mutation p.D261Y 0.34 tolerated_low_confidence(0.11) probably_damaging(0.956) TCGA-BP-4976-01 6 43237449 43237449 C T TTBK1 Intron 0.43 TCGA-BP-4976-01 6 49425564 49425564 T - MUT Frame_Shift_Del p.N198Ifs*3 0.26 TCGA-BP-4976-01 6 86256928 86256928 A - SNX14 Frame_Shift_Del p.L337* 0.26 TCGA-BP-4976-01 7 128049515 128049515 T C IMPDH1 Missense_Mutation p.H57R 0.27 tolerated_low_confidence(0.25) benign(0) TCGA-BP-4976-01 7 139754561 139754561 T - PARP12 Frame_Shift_Del p.R255Efs*73 0.21 TCGA-BP-4976-01 7 151962234 151962234 A C KMT2C Missense_Mutation p.F358C 0.04 probably_damaging(0.95) TCGA-BP-4976-01 7 2577853 2577853 C G BRAT1 Silent p.V772V 0.54 TCGA-BP-4976-01 7 37955990 37955990 C A SFRP4 Silent p.T50T 0.36 TCGA-BP-4976-01 7 92732506 92732506 T G SAMD9 Missense_Mutation p.K969Q 0.34 tolerated(0.47) benign(0.004) TCGA-BP-4976-01 8 118552190 118552190 A - MED30 Frame_Shift_Del p.N171Mfs*6 0.29 TCGA-BP-4976-01 8 12044016 12044016 T A FAM86B1 Missense_Mutation p.Q162L 0.10 tolerated(0.07) benign(0.048) TCGA-BP-4976-01 8 12950255 12950255 C G DLC1 Missense_Mutation p.Q1202H 0.27 deleterious(0) probably_damaging(0.984) TCGA-BP-4976-01 8 144733697 144733697 G T ZNF623 3'UTR 0.38 TCGA-BP-4976-01 8 146156465 146156465 G T ZNF16 Missense_Mutation p.L570M 0.42 deleterious(0) possibly_damaging(0.593) TCGA-BP-4976-01 8 38775521 38775521 T A PLEKHA2 Missense_Mutation p.F25Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-BP-4976-01 8 68658368 68658368 G A CPA6 5'UTR 0.48 TCGA-BP-4976-01 8 87464827 87464827 A G WWP1 Silent p.E771E 0.34 TCGA-BP-4976-01 9 5073717 5073717 G T JAK2 Missense_Mutation p.S599I 0.33 deleterious(0) possibly_damaging(0.903) TCGA-BP-4976-01 X 83128529 83128529 T C CYLC1 Silent p.N271N 0.48 TCGA-BP-4977-01 10 123503288 123503288 C T ATE1 Silent p.Q488Q 0.19 TCGA-BP-4977-01 10 17151661 17151661 A T CUBN Missense_Mutation p.D363E 0.36 tolerated(1) benign(0.006) TCGA-BP-4977-01 10 63520664 63520664 C T C10orf107 Missense_Mutation p.T152I 0.22 deleterious(0.05) benign(0.112) TCGA-BP-4977-01 11 1491652 1491652 A T MOB2 Missense_Mutation p.L186Q 0.47 deleterious(0) probably_damaging(0.992) TCGA-BP-4977-01 11 86048459 86048459 G A C11orf73 Missense_Mutation p.V103I 0.40 tolerated(0.47) benign(0.002) TCGA-BP-4977-01 12 3939160 3939160 A T PARP11 Missense_Mutation p.L15I 0.27 tolerated_low_confidence(0.4) benign(0.004) TCGA-BP-4977-01 12 62887719 62887719 T A MON2 Missense_Mutation p.V67D 0.27 deleterious(0) probably_damaging(0.964) TCGA-BP-4977-01 12 93100735 93100735 T G C12orf74 Missense_Mutation p.S110A 0.33 tolerated(0.7) benign(0.007) TCGA-BP-4977-01 13 44458052 44458052 C A LACC1 Missense_Mutation p.A296E 0.40 deleterious(0) probably_damaging(0.939) TCGA-BP-4977-01 13 52511675 52511675 C T ATP7B Missense_Mutation p.M1280I 0.24 tolerated(0.06) benign(0) TCGA-BP-4977-01 15 39877708 39877708 T C THBS1 Missense_Mutation p.I355T 0.57 tolerated(0.32) benign(0.09) TCGA-BP-4977-01 16 4165079 4165079 T C ADCY9 Missense_Mutation p.Y122C 0.33 deleterious(0) probably_damaging(0.987) TCGA-BP-4977-01 16 68862136 68862136 C T CDH1 Silent p.L742L 0.28 TCGA-BP-4977-01 17 27999019 27999019 T G SSH2 Missense_Mutation p.N221T 0.49 deleterious(0.02) possibly_damaging(0.752) TCGA-BP-4977-01 17 3195183 3195183 G A OR3A1 Missense_Mutation p.R232C 0.26 deleterious(0.04) benign(0.103) TCGA-BP-4977-01 18 66367641 66367641 C A TMX3 Splice_Site p.X131_splice 0.26 TCGA-BP-4977-01 19 35651641 35651641 C A FXYD5 Missense_Mutation p.Q77K 0.26 tolerated(0.27) benign(0.001) TCGA-BP-4977-01 19 49131593 49131593 T C SPHK2 Intron 0.12 TCGA-BP-4977-01 1 152127163 152127163 G A RPTN 3'UTR 0.20 TCGA-BP-4977-01 1 15819331 15819331 G A CASP9 3'UTR 0.23 TCGA-BP-4977-01 1 184764085 184764086 - A FAM129A 3'UTR 0.29 TCGA-BP-4977-01 1 19167003 19167003 G A TAS1R2 Missense_Mutation p.A537V 0.20 deleterious(0.03) benign(0.006) TCGA-BP-4977-01 1 197159944 197159944 G T ZBTB41 Missense_Mutation p.A449E 0.35 tolerated(0.19) benign(0.104) TCGA-BP-4977-01 1 230891141 230891141 A G CAPN9 Missense_Mutation p.Q91R 0.23 deleterious(0) probably_damaging(0.999) TCGA-BP-4977-01 1 24288224 24288224 T A PNRC2 Missense_Mutation p.Y93N 0.36 deleterious(0) probably_damaging(1) TCGA-BP-4977-01 21 40558945 40558945 A G BRWD1 3'UTR 0.22 TCGA-BP-4977-01 22 21380552 21380552 C G P2RX6 Missense_Mutation p.F354L 0.38 tolerated(1) benign(0.002) TCGA-BP-4977-01 2 109382975 109382975 G C RANBP2 Missense_Mutation p.G1994R 0.38 tolerated(0.17) benign(0.052) TCGA-BP-4977-01 2 158115425 158115425 T - GALNT5 Frame_Shift_Del p.P279Lfs*10 0.35 TCGA-BP-4977-01 2 175436858 175436881 GTTTCCAGGGAAAGGGGGAGGAGT - WIPF1 In_Frame_Del p.T218_N225del 0.25 TCGA-BP-4977-01 2 189906379 189906379 T C COL5A2 Missense_Mutation p.N1189S 0.20 unknown(0) TCGA-BP-4977-01 2 224866441 224866441 C T SERPINE2 Silent p.A71A 0.30 TCGA-BP-4977-01 2 32693017 32693017 T G BIRC6 Missense_Mutation p.I1873S 0.24 probably_damaging(0.986) TCGA-BP-4977-01 3 10191611 10191612 AC - VHL Frame_Shift_Del p.Q203Gfs*52 0.36 TCGA-BP-4977-01 3 129152917 129152917 A G MBD4 Missense_Mutation p.Y422H 0.20 deleterious(0.01) probably_damaging(0.959) TCGA-BP-4977-01 4 56277929 56277929 T C TMEM165 Missense_Mutation p.I119T 0.36 deleterious(0.04) probably_damaging(0.951) TCGA-BP-4977-01 5 127714472 127714472 G A FBN2 Missense_Mutation p.A572V 0.31 tolerated(0.06) benign(0.411) TCGA-BP-4977-01 5 131671519 131671519 T A SLC22A4 Missense_Mutation p.F424I 0.42 tolerated(0.41) benign(0) TCGA-BP-4977-01 6 105526661 105526661 G A LIN28B 3'UTR 0.42 TCGA-BP-4977-01 6 108227661 108227661 G A SEC63 Missense_Mutation p.L318F 0.16 deleterious(0) probably_damaging(0.983) TCGA-BP-4977-01 6 31545342 31545342 C T TNF 3'UTR 0.27 TCGA-BP-4977-01 7 134221461 134221461 C G AKR1B10 Missense_Mutation p.S163R 0.40 deleterious(0) benign(0.257) TCGA-BP-4977-01 7 156450264 156450264 C T RNF32 Silent p.H149H 0.29 TCGA-BP-4977-01 7 31683360 31683360 C A CCDC129 Silent p.I818I 0.47 TCGA-BP-4977-01 7 51261213 51261213 T A COBL Missense_Mutation p.I107F 0.31 deleterious(0.01) probably_damaging(0.98) TCGA-BP-4977-01 9 117840239 117840239 T A TNC Missense_Mutation p.K886I 0.35 tolerated(0.11) benign(0.361) TCGA-BP-4977-01 9 124975917 124975917 G A LHX6 Missense_Mutation p.A341V 0.39 deleterious(0.02) possibly_damaging(0.774) TCGA-BP-4977-01 9 99581317 99581317 T C ZNF782 Missense_Mutation p.R330G 0.43 tolerated(0.07) benign(0) TCGA-BP-4977-01 X 69825332 69825332 C A TEX11 Silent p.L677L 0.67 TCGA-BP-4981-01 10 50738880 50738880 A C ERCC6-PGBD3 Missense_Mutation p.C143W 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BP-4981-01 10 75860838 75860838 C G VCL Missense_Mutation p.R669G 0.26 tolerated(0.08) probably_damaging(0.999) TCGA-BP-4981-01 11 47652589 47652589 A G MTCH2 Missense_Mutation p.C160R 0.36 deleterious(0.05) benign(0.431) TCGA-BP-4981-01 11 6415569 6415569 A T SMPD1 Missense_Mutation p.E543V 0.37 deleterious(0.02) possibly_damaging(0.835) TCGA-BP-4981-01 12 11060895 11060895 A T TAS2R13 3'UTR 0.30 TCGA-BP-4981-01 12 133198270 133198270 G T P2RX2 Missense_Mutation p.K402N 0.29 deleterious(0.01) probably_damaging(0.948) TCGA-BP-4981-01 12 32949147 32949147 G A PKP2 Silent p.A795A 0.48 TCGA-BP-4981-01 12 442728 442728 A G KDM5A Silent p.F526F 0.39 TCGA-BP-4981-01 12 53682952 53682952 T C ESPL1 Missense_Mutation p.L1596P 0.31 deleterious(0) probably_damaging(0.968) TCGA-BP-4981-01 12 56554166 56554166 T C MYL6 Intron 0.43 TCGA-BP-4981-01 12 57346629 57346629 C T RDH16 Missense_Mutation p.E240K 0.32 tolerated(0.1) benign(0.021) TCGA-BP-4981-01 12 95475264 95475264 T C FGD6 3'UTR 0.45 TCGA-BP-4981-01 13 113803333 113803333 C G F10 Missense_Mutation p.I323M 0.03 deleterious(0.02) probably_damaging(0.966) TCGA-BP-4981-01 13 113854792 113854792 A G PCID2 Silent p.C25C 0.28 TCGA-BP-4981-01 14 102551690 102551690 A G HSP90AA1 Missense_Mutation p.I325T 0.59 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BP-4981-01 14 105410662 105410662 C T AHNAK2 Missense_Mutation p.G3709D 0.52 probably_damaging(0.996) TCGA-BP-4981-01 14 61789073 61789073 C T PRKCH Missense_Mutation p.A85V 0.08 tolerated(0.58) possibly_damaging(0.653) TCGA-BP-4981-01 15 21071316 21071316 G A POTEB2 Missense_Mutation p.R99C 0.11 deleterious(0.03) benign(0.013) TCGA-BP-4981-01 16 15872668 15872668 C T MYH11 Silent p.T260T 0.24 TCGA-BP-4981-01 16 21611123 21611123 G C METTL9 Silent p.T23T 0.75 TCGA-BP-4981-01 16 64984852 64984852 G A CDH11 Missense_Mutation p.P571L 0.19 deleterious(0) probably_damaging(0.997) TCGA-BP-4981-01 16 816775 816775 C G MSLN Silent p.P454P 0.24 TCGA-BP-4981-01 17 41158865 41158865 A G IFI35 5'UTR 0.30 TCGA-BP-4981-01 17 41158866 41158866 C A IFI35 5'UTR 0.30 TCGA-BP-4981-01 17 53345085 53345085 T C HLF Intron 0.39 TCGA-BP-4981-01 17 57915760 57915760 T C VMP1 Splice_Site p.X359_splice 0.39 TCGA-BP-4981-01 18 9211598 9211598 T C ANKRD12 Silent p.H156H 0.31 TCGA-BP-4981-01 19 14749072 14749072 G T EMR3 Missense_Mutation p.H443Q 0.34 tolerated(0.06) possibly_damaging(0.711) TCGA-BP-4981-01 19 2214517 2214517 G A DOT1L Silent p.S615S 0.37 TCGA-BP-4981-01 19 375870 375870 C T THEG Missense_Mutation p.S34N 0.36 tolerated_low_confidence(0.45) benign(0.003) TCGA-BP-4981-01 19 40971626 40971626 G A BLVRB 5'UTR 0.28 TCGA-BP-4981-01 19 49340499 49340499 T C PLEKHA4 3'UTR 0.06 TCGA-BP-4981-01 19 50461806 50461806 G A SIGLEC11 Missense_Mutation p.P462L 0.23 deleterious(0) probably_damaging(0.996) TCGA-BP-4981-01 19 6828883 6828883 T C VAV1 Missense_Mutation p.S413P 0.33 deleterious(0) possibly_damaging(0.901) TCGA-BP-4981-01 19 8996442 8996442 G A MUC16 Silent p.H13710H 0.06 TCGA-BP-4981-01 1 116574219 116574219 G A SLC22A15 Intron 0.08 TCGA-BP-4981-01 1 152285874 152285874 G T FLG Missense_Mutation p.H496Q 0.33 possibly_damaging(0.684) TCGA-BP-4981-01 1 159558513 159558513 G A APCS 3'UTR 0.33 TCGA-BP-4981-01 1 183072650 183072650 G A LAMC1 Silent p.Q202Q 0.04 TCGA-BP-4981-01 1 186017962 186017962 A C HMCN1 Missense_Mutation p.N2190H 0.36 probably_damaging(0.999) TCGA-BP-4981-01 1 200586908 200586908 T A KIF14 Missense_Mutation p.Q315L 0.39 tolerated(0.09) benign(0.081) TCGA-BP-4981-01 1 47028508 47028508 G C MKNK1 Missense_Mutation p.S259C 0.25 deleterious(0) probably_damaging(0.997) TCGA-BP-4981-01 1 47401233 47401233 C T CYP4A11 Silent p.K199K 0.34 TCGA-BP-4981-01 20 34487450 34487450 A T PHF20 Nonsense_Mutation p.K481* 0.35 TCGA-BP-4981-01 20 54824097 54824097 C T MC3R Silent p.N66N 0.37 TCGA-BP-4981-01 20 5903114 5903114 G A CHGB Silent p.G108G 0.43 TCGA-BP-4981-01 2 109103098 109103098 T A GCC2 Silent p.A1308A 0.31 TCGA-BP-4981-01 2 240969330 240969330 C T OR6B2 Missense_Mutation p.V173I 0.18 tolerated(0.5) benign(0.025) TCGA-BP-4981-01 2 25967152 25967152 G C ASXL2 Nonsense_Mutation p.S685* 0.32 TCGA-BP-4981-01 2 85820299 85820299 A T VAMP5 3'UTR 0.28 TCGA-BP-4981-01 3 125032327 125032327 G T ZNF148 Missense_Mutation p.P53H 0.35 deleterious(0) possibly_damaging(0.595) TCGA-BP-4981-01 3 139074556 139074556 A G MRPS22 Missense_Mutation p.Y304C 0.31 deleterious(0) probably_damaging(0.997) TCGA-BP-4981-01 3 146311927 146311927 A C PLSCR5 Missense_Mutation p.M78R 0.42 deleterious(0.02) benign(0.292) TCGA-BP-4981-01 3 160254590 160254590 T G KPNA4 Missense_Mutation p.L36F 0.07 deleterious(0.01) possibly_damaging(0.529) TCGA-BP-4981-01 3 188426268 188426268 G A LPP Intron 0.26 TCGA-BP-4981-01 3 30769765 30769765 T C GADL1 Missense_Mutation p.D512G 0.09 deleterious(0.04) benign(0.048) TCGA-BP-4981-01 3 52662911 52662911 T - PBRM1 Frame_Shift_Del p.Q481Rfs*19 0.34 TCGA-BP-4981-01 4 128605608 128605608 A T INTU Missense_Mutation p.Q409L 0.24 deleterious(0) benign(0.096) TCGA-BP-4981-01 4 13602085 13602085 T C BOD1L1 Missense_Mutation p.S2147G 0.37 probably_damaging(0.997) TCGA-BP-4981-01 4 2664872 2664873 - A FAM193A Frame_Shift_Ins p.A356Sfs*2 0.33 TCGA-BP-4981-01 4 71555786 71555786 A C UTP3 Missense_Mutation p.E464D 0.30 deleterious(0) probably_damaging(1) TCGA-BP-4981-01 4 83350567 83350567 T C HNRNPDL Missense_Mutation p.S93G 0.34 tolerated_low_confidence(0.19) benign(0) TCGA-BP-4981-01 5 140255597 140255597 T G PCDHA12 Silent p.L180L 0.60 TCGA-BP-4981-01 5 175772242 175772242 C T SIMC1 Missense_Mutation p.P390S 0.50 deleterious(0.01) possibly_damaging(0.889) TCGA-BP-4981-01 6 31379000 31379000 G T MICA Missense_Mutation p.Q159H 0.29 deleterious(0.03) benign(0.012) TCGA-BP-4981-01 6 54212217 54212217 T C TINAG Silent p.N267N 0.37 TCGA-BP-4981-01 7 35733856 35733856 A C HERPUD2 Missense_Mutation p.F29V 0.03 tolerated(0.4) benign(0.189) TCGA-BP-4981-01 7 47384579 47384579 T C TNS3 Missense_Mutation p.S837G 0.35 tolerated(1) benign(0.001) TCGA-BP-4981-01 7 48313955 48313955 C T ABCA13 Silent p.N1564N 0.35 TCGA-BP-4981-01 8 125464604 125464604 C T TRMT12 3'UTR 0.35 TCGA-BP-4981-01 8 62588827 62588827 A G ASPH Intron 0.17 TCGA-BP-4981-01 9 134405914 134405914 T G UCK1 Missense_Mutation p.K81T 0.32 tolerated(0.07) benign(0.08) TCGA-BP-4981-01 9 134612882 134612882 C T RAPGEF1 5'UTR 0.29 TCGA-BP-4981-01 9 136260828 136260828 A C C9orf96 Missense_Mutation p.E268D 0.27 tolerated(0.91) benign(0.009) TCGA-BP-4981-01 X 107909822 107909822 C T COL4A5 Missense_Mutation p.P1184L 0.35 unknown(0) TCGA-BP-4981-01 X 16142010 16142010 G A GRPR 5'UTR 0.62 TCGA-BP-4981-01 X 48549645 48549645 A G WAS 3'UTR 0.15 TCGA-BP-4981-01 X 91133909 91133909 A G PCDH11X Silent p.E890E 0.04 TCGA-BP-4982-01 10 100481428 100481428 G A HPSE2 Silent p.I314I 0.25 TCGA-BP-4982-01 10 46968685 46968685 T G SYT15 Missense_Mutation p.Q84P 0.08 tolerated(0.05) possibly_damaging(0.52) TCGA-BP-4982-01 10 70967647 70967647 C A SUPV3L1 Silent p.L625L 0.24 TCGA-BP-4982-01 11 119004822 119004822 C T HINFP Missense_Mutation p.R390W 0.05 deleterious(0) probably_damaging(0.964) TCGA-BP-4982-01 12 82752142 82752143 CT - CCDC59 Frame_Shift_Del p.R5Afs*11 0.19 TCGA-BP-4982-01 14 23549183 23549183 T A ACIN1 Missense_Mutation p.Y512F 0.20 benign(0.099) TCGA-BP-4982-01 15 51696755 51696755 C A GLDN Missense_Mutation p.T487N 0.18 tolerated(0.18) possibly_damaging(0.838) TCGA-BP-4982-01 16 15761201 15761201 G A NDE1 Missense_Mutation p.A48T 0.27 deleterious(0.04) possibly_damaging(0.664) TCGA-BP-4982-01 16 15761202 15761202 C G NDE1 Missense_Mutation p.A48G 0.27 deleterious(0.01) possibly_damaging(0.868) TCGA-BP-4982-01 17 45916363 45916363 C T SCRN2 Missense_Mutation p.R189H 0.04 deleterious(0.02) possibly_damaging(0.466) TCGA-BP-4982-01 17 48818534 48818534 T G LUC7L3 Missense_Mutation p.L93R 0.18 tolerated(0.05) unknown(0) TCGA-BP-4982-01 17 5268432 5268432 C A RABEP1 Missense_Mutation p.L562M 0.22 tolerated(0.15) benign(0.004) TCGA-BP-4982-01 17 72584940 72584940 G A CD300LD Missense_Mutation p.S30L 0.03 tolerated(0.78) benign(0.004) TCGA-BP-4982-01 18 42531862 42531862 C A SETBP1 Missense_Mutation p.L853M 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-BP-4982-01 18 55020256 55020256 G T ST8SIA3 Missense_Mutation p.R60L 0.14 benign(0.111) TCGA-BP-4982-01 19 44352476 44352476 G T ZNF283 Nonsense_Mutation p.E575* 0.24 TCGA-BP-4982-01 19 49468842 49468842 G A FTL Silent p.Q26Q 0.16 TCGA-BP-4982-01 19 51645712 51645712 C A SIGLEC7 Missense_Mutation p.T29K 0.08 tolerated(0.37) benign(0.002) TCGA-BP-4982-01 19 830861 830861 G A AZU1 Missense_Mutation p.V172M 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-BP-4982-01 1 109482394 109482394 A T CLCC1 Missense_Mutation p.V302D 0.15 deleterious(0) probably_damaging(0.94) TCGA-BP-4982-01 1 110655193 110655193 T A UBL4B Missense_Mutation p.C13S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-BP-4982-01 1 114439000 114439000 C A AP4B1 Missense_Mutation p.V464L 0.15 tolerated(0.28) benign(0.026) TCGA-BP-4982-01 1 223568377 223568377 C T C1orf65 Silent p.H520H 0.18 TCGA-BP-4982-01 1 226564845 226564845 G C PARP1 Silent p.P635P 0.21 TCGA-BP-4982-01 1 76205772 76205772 A G ACADM Missense_Mutation p.I196M 0.19 deleterious(0) probably_damaging(1) TCGA-BP-4982-01 1 970662 970662 C A AGRN Missense_Mutation p.P157T 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-BP-4982-01 20 1144992 1144992 C T PSMF1 Silent p.P212P 0.20 TCGA-BP-4982-01 20 36946865 36946865 C A BPI Missense_Mutation p.F221L 0.22 tolerated(1) benign(0) TCGA-BP-4982-01 21 45978577 45978577 C A KRTAP10-3 Missense_Mutation p.V8F 0.16 deleterious(0) unknown(0) TCGA-BP-4982-01 2 152236144 152236144 T G TNFAIP6 3'UTR 0.45 TCGA-BP-4982-01 2 202003145 202003145 T C CFLAR Intron 0.13 TCGA-BP-4982-01 2 209025590 209025590 G A CRYGA Missense_Mutation p.H155Y 0.04 tolerated(1) benign(0.017) TCGA-BP-4982-01 2 28752200 28752200 C A PLB1 Silent p.I114I 0.14 TCGA-BP-4982-01 3 100059917 100059917 G T NIT2 Missense_Mutation p.G83V 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-BP-4982-01 3 100059918 100059918 C T NIT2 Silent p.G83G 0.20 TCGA-BP-4982-01 3 10183794 10183794 G A VHL Nonsense_Mutation p.W88* 0.21 TCGA-BP-4982-01 3 112732116 112732116 T C C3orf17 Intron 0.21 TCGA-BP-4982-01 3 14188848 14188848 T G XPC Missense_Mutation p.K849T 0.44 tolerated(0.12) possibly_damaging(0.562) TCGA-BP-4982-01 3 47455554 47455554 T A SCAP Silent p.S1210S 0.36 TCGA-BP-4982-01 3 49059885 49059885 A G NDUFAF3 Missense_Mutation p.S62G 0.40 tolerated(0.36) benign(0.101) TCGA-BP-4982-01 3 52702612 52702612 T A PBRM1 Nonsense_Mutation p.K96* 0.36 TCGA-BP-4982-01 4 184931210 184931210 C T STOX2 Missense_Mutation p.P407S 0.06 deleterious(0) probably_damaging(0.999) TCGA-BP-4982-01 5 54618206 54618206 T C SKIV2L2 Silent p.N62N 0.29 TCGA-BP-4982-01 6 109294817 109294817 A T ARMC2 3'UTR 0.26 TCGA-BP-4982-01 6 29556320 29556320 C T OR2H2 Missense_Mutation p.A200V 0.22 tolerated(0.4) benign(0.403) TCGA-BP-4982-01 6 35086135 35086135 G T TCP11 Missense_Mutation p.Q488K 0.23 tolerated(0.25) possibly_damaging(0.6) TCGA-BP-4982-01 7 129592346 129592346 T A UBE2H Missense_Mutation p.K17M 0.16 deleterious(0) benign(0.299) TCGA-BP-4982-01 8 38173525 38173525 T C WHSC1L1 Missense_Mutation p.K631E 0.19 deleterious(0) probably_damaging(0.998) TCGA-BP-4982-01 9 35810979 35810979 G A SPAG8 Missense_Mutation p.R314W 0.22 deleterious(0) probably_damaging(0.963) TCGA-BP-4982-01 9 90497800 90497800 G T SPATA31E1 5'UTR 0.14 TCGA-BP-4983-01 10 101372327 101372327 G T SLC25A28 Missense_Mutation p.H184N 0.07 deleterious(0.01) probably_damaging(1) TCGA-BP-4983-01 10 27529390 27529390 G A ACBD5 Silent p.S13S 0.14 TCGA-BP-4983-01 10 44112888 44112888 T C ZNF485 3'UTR 0.14 TCGA-BP-4983-01 10 44140022 44140022 T C ZNF32 Missense_Mutation p.T100A 0.06 deleterious(0) probably_damaging(0.926) TCGA-BP-4983-01 10 63958099 63958099 T C RTKN2 Silent p.L466L 0.14 TCGA-BP-4983-01 11 5686705 5686705 G A TRIM5 Intron 0.17 TCGA-BP-4983-01 11 5776181 5776181 A G OR52N4 Missense_Mutation p.T71A 0.05 tolerated(0.09) benign(0.263) TCGA-BP-4983-01 11 65318874 65318874 G A LTBP3 Silent p.P540P 0.22 TCGA-BP-4983-01 11 74555233 74555233 A G XRRA1 Missense_Mutation p.Y667H 0.26 deleterious(0) possibly_damaging(0.883) TCGA-BP-4983-01 12 132491323 132491323 C T EP400 Missense_Mutation p.L1069F 0.18 unknown(0) TCGA-BP-4983-01 12 2800179 2800179 G A CACNA1C Silent p.A2125A 0.14 TCGA-BP-4983-01 12 53228032 53228032 C T KRT79 Missense_Mutation p.V5I 0.07 tolerated(0.26) benign(0.001) TCGA-BP-4983-01 12 57600464 57600464 G A LRP1 Silent p.A3933A 0.13 TCGA-BP-4983-01 12 6859423 6859423 C T MLF2 Missense_Mutation p.V107I 0.09 tolerated(0.09) probably_damaging(0.928) TCGA-BP-4983-01 12 81110806 81110806 C T MYF5 5'UTR 0.10 TCGA-BP-4983-01 12 85450294 85450294 A C LRRIQ1 Missense_Mutation p.I575L 0.22 tolerated(0.08) benign(0.17) TCGA-BP-4983-01 14 36096963 36096963 G A RALGAPA1 Nonsense_Mutation p.Q1558* 0.15 TCGA-BP-4983-01 14 51259502 51259502 A C NIN Silent p.P121P 0.23 TCGA-BP-4983-01 14 96789061 96789061 T C ATG2B Missense_Mutation p.K851R 0.24 tolerated(0.26) probably_damaging(0.931) TCGA-BP-4983-01 15 25334027 25334027 C G SNORD116-20 RNA 0.07 TCGA-BP-4983-01 15 28501377 28501377 C T HERC2 Silent p.T868T 0.13 TCGA-BP-4983-01 15 33988670 33988670 T C RYR3 Silent p.L2038L 0.17 TCGA-BP-4983-01 15 40594520 40594520 T A PLCB2 Nonsense_Mutation p.K135* 0.20 TCGA-BP-4983-01 15 62209539 62209539 C A VPS13C Splice_Site p.X2685_splice 0.08 TCGA-BP-4983-01 15 65954291 65954291 A C DENND4A Missense_Mutation p.D1873E 0.09 tolerated(0.18) benign(0.003) TCGA-BP-4983-01 15 89382103 89382103 G A ACAN Missense_Mutation p.V94M 0.13 deleterious(0) unknown(0) TCGA-BP-4983-01 16 1291647 1291647 T C TPSAB1 Missense_Mutation p.F149S 0.25 deleterious(0) probably_damaging(0.999) TCGA-BP-4983-01 16 2225568 2225568 G A TRAF7 Missense_Mutation p.R524Q 0.09 deleterious(0) probably_damaging(1) TCGA-BP-4983-01 16 83520205 83520205 A T CDH13 Missense_Mutation p.D349V 0.05 deleterious(0) probably_damaging(0.999) TCGA-BP-4983-01 17 13399941 13399941 G A HS3ST3A1 Missense_Mutation p.T265I 0.14 deleterious(0) benign(0.244) TCGA-BP-4983-01 17 34190111 34190111 A G C17orf66 Missense_Mutation p.V215A 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-BP-4983-01 17 3984690 3984690 C T ZZEF1 Missense_Mutation p.V937I 0.08 tolerated(0.09) benign(0) TCGA-BP-4983-01 17 48545894 48545894 G A CHAD Missense_Mutation p.A94V 0.18 deleterious(0) probably_damaging(0.999) TCGA-BP-4983-01 17 60743545 60743545 C T MRC2 Missense_Mutation p.T204M 0.15 tolerated(0.15) benign(0.149) TCGA-BP-4983-01 17 62009607 62009607 C T CD79B Silent p.A5A 0.16 TCGA-BP-4983-01 17 79220707 79220707 G A SLC38A10 Silent p.D740D 0.11 TCGA-BP-4983-01 18 33750159 33750159 G T ELP2 Missense_Mutation p.R802L 0.17 deleterious(0.01) possibly_damaging(0.805) TCGA-BP-4983-01 18 52895520 52895520 G A TCF4 Missense_Mutation p.P753L 0.06 tolerated(0.19) probably_damaging(0.944) TCGA-BP-4983-01 18 59195205 59195205 G A CDH20 Silent p.L341L 0.08 TCGA-BP-4983-01 19 41092770 41092770 G T SHKBP1 Missense_Mutation p.G419V 0.07 deleterious(0) probably_damaging(0.98) TCGA-BP-4983-01 19 41515984 41515984 C T CYP2B6 Missense_Mutation p.T303I 0.18 tolerated(0.08) probably_damaging(0.988) TCGA-BP-4983-01 19 48284546 48284546 G A SEPW1 Splice_Site p.X62_splice 0.07 TCGA-BP-4983-01 1 155252388 155252388 T C HCN3 Silent p.A155A 0.27 TCGA-BP-4983-01 1 159170640 159170640 C T CADM3 Silent p.D409D 0.12 TCGA-BP-4983-01 1 16256120 16256120 G A SPEN Missense_Mutation p.V1129I 0.30 benign(0.001) TCGA-BP-4983-01 1 170964596 170964596 C T MROH9 Missense_Mutation p.P421S 0.21 deleterious(0) probably_damaging(0.99) TCGA-BP-4983-01 1 181549889 181549889 G T CACNA1E Missense_Mutation p.G310W 0.10 deleterious(0) probably_damaging(0.991) TCGA-BP-4983-01 1 197087083 197087083 A G ASPM Silent p.L1301L 0.17 TCGA-BP-4983-01 1 204170926 204170926 G A GOLT1A Missense_Mutation p.T44M 0.09 deleterious(0.01) possibly_damaging(0.677) TCGA-BP-4983-01 1 23191446 23191446 C T EPHB2 Silent p.R348R 0.13 TCGA-BP-4983-01 1 248525256 248525256 C A OR2T4 Nonsense_Mutation p.S125* 0.08 TCGA-BP-4983-01 1 38300861 38300861 T C MTF1 Missense_Mutation p.N294D 0.03 tolerated(1) benign(0.007) TCGA-BP-4983-01 1 72163794 72163794 C T NEGR1 Silent p.L188L 0.07 TCGA-BP-4983-01 1 97236294 97236294 G C PTBP2 Missense_Mutation p.A107P 0.09 deleterious(0) probably_damaging(0.999) TCGA-BP-4983-01 20 31023504 31023504 G T ASXL1 Nonsense_Mutation p.E997* 0.24 TCGA-BP-4983-01 20 39987126 39987126 C T LPIN3 Silent p.F785F 0.13 TCGA-BP-4983-01 20 45927547 45927547 G T ZMYND8 Missense_Mutation p.P127T 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-BP-4983-01 21 34117899 34117899 A C PAXBP1 Missense_Mutation p.L685R 0.10 deleterious(0) probably_damaging(0.995) TCGA-BP-4983-01 22 30886259 30886259 G A SEC14L4 Intron 0.11 TCGA-BP-4983-01 22 31091334 31091334 G A OSBP2 Silent p.A146A 0.07 TCGA-BP-4983-01 22 50660936 50660936 G A TUBGCP6 Nonsense_Mutation p.R786* 0.11 TCGA-BP-4983-01 2 242380935 242380935 C A FARP2 Missense_Mutation p.Q459K 0.14 tolerated(0.52) benign(0.002) TCGA-BP-4983-01 2 29295510 29295510 T G C2orf71 Missense_Mutation p.M540L 0.08 tolerated(0.05) possibly_damaging(0.517) TCGA-BP-4983-01 2 70315104 70315104 G T PCBP1 Missense_Mutation p.D77Y 0.09 tolerated(1) benign(0.07) TCGA-BP-4983-01 3 183035915 183035915 T C MCF2L2 Missense_Mutation p.S232G 0.09 tolerated(0.28) benign(0.001) TCGA-BP-4983-01 3 183669339 183669339 G A ABCC5 Missense_Mutation p.S945F 0.16 deleterious(0.04) benign(0.303) TCGA-BP-4983-01 3 33905544 33905544 C T PDCD6IP Missense_Mutation p.P728S 0.09 tolerated(0.26) benign(0.083) TCGA-BP-4983-01 3 47098412 47098413 - AT SETD2 Frame_Shift_Ins p.P2288Ifs*22 0.20 TCGA-BP-4983-01 3 50290461 50290461 C T GNAI2 Silent p.D103D 0.09 TCGA-BP-4983-01 3 68466568 68466568 A G FAM19A1 Missense_Mutation p.D86G 0.12 deleterious(0) probably_damaging(0.996) TCGA-BP-4983-01 4 102751231 102751232 AC T BANK1 Frame_Shift_Del p.T113Ffs*6 0.15 TCGA-BP-4983-01 4 147560212 147560212 C A POU4F2 5'UTR 0.33 TCGA-BP-4983-01 4 147830304 147830304 C T TTC29 Missense_Mutation p.D92N 0.09 tolerated(1) benign(0.002) TCGA-BP-4983-01 4 151727452 151727452 T - LRBA Frame_Shift_Del p.H1830Lfs*7 0.15 TCGA-BP-4983-01 4 164435307 164435307 A C TMA16 Missense_Mutation p.E79A 0.04 deleterious(0.02) possibly_damaging(0.835) TCGA-BP-4983-01 4 39851255 39851255 A G PDS5A Missense_Mutation p.L1035P 0.18 deleterious(0) probably_damaging(0.996) TCGA-BP-4983-01 4 68749693 68749693 C T TMPRSS11D 5'UTR 0.10 TCGA-BP-4983-01 4 69795667 69795667 C A UGT2A3 Missense_Mutation p.W483L 0.06 deleterious(0.01) possibly_damaging(0.58) TCGA-BP-4983-01 4 69962460 69962460 T G UGT2B7 Missense_Mutation p.I74M 0.10 deleterious(0.02) benign(0.188) TCGA-BP-4983-01 5 133493645 133493645 T C SKP1 Intron 0.23 TCGA-BP-4983-01 5 175523878 175523878 C A FAM153B Nonsense_Mutation p.S62* 0.13 TCGA-BP-4983-01 6 100062550 100062550 A G PRDM13 Missense_Mutation p.K680R 0.11 tolerated_low_confidence(0.09) probably_damaging(0.917) TCGA-BP-4983-01 6 30887607 30887607 C T VARS2 Nonsense_Mutation p.Q413* 0.06 TCGA-BP-4983-01 6 49419319 49419319 T C MUT Missense_Mutation p.T398A 0.13 deleterious_low_confidence(0) possibly_damaging(0.734) TCGA-BP-4983-01 7 100211116 100211116 G A MOSPD3 Missense_Mutation p.A100T 0.24 tolerated(0.17) possibly_damaging(0.87) TCGA-BP-4983-01 7 100681776 100681776 C A MUC17 Missense_Mutation p.T2360K 0.18 unknown(0) TCGA-BP-4983-01 7 121652033 121652033 C - PTPRZ1 Frame_Shift_Del p.P979Qfs*35 0.10 TCGA-BP-4983-01 7 127341301 127341301 T C SND1 Silent p.H171H 0.12 TCGA-BP-4983-01 7 150171404 150171404 G A GIMAP8 Silent p.L329L 0.04 TCGA-BP-4983-01 7 155537939 155537939 T G RBM33 Silent p.L874L 0.19 TCGA-BP-4983-01 7 18625053 18625053 C A HDAC9 Missense_Mutation p.Q58K 0.26 deleterious(0) benign(0.157) TCGA-BP-4983-01 7 38530710 38530710 T A AMPH Missense_Mutation p.K112N 0.27 deleterious(0) probably_damaging(0.976) TCGA-BP-4983-01 7 4011189 4011189 G T SDK1 Silent p.R602R 0.08 TCGA-BP-4983-01 7 48314761 48314761 G A ABCA13 Missense_Mutation p.R1833Q 0.15 benign(0) TCGA-BP-4983-01 7 86811528 86811528 C G DMTF1 Intron 0.17 TCGA-BP-4983-01 8 48701554 48701555 - T PRKDC Frame_Shift_Ins p.N3604Kfs*3 0.10 TCGA-BP-4983-01 9 111966009 111966009 C T EPB41L4B Missense_Mutation p.G627D 0.05 tolerated_low_confidence(0.49) benign(0.024) TCGA-BP-4983-01 9 116859632 116859632 G C KIF12 Missense_Mutation p.R61G 0.16 tolerated(0.24) possibly_damaging(0.871) TCGA-BP-4983-01 9 125760994 125760994 G A RABGAP1 Nonsense_Mutation p.W441* 0.09 TCGA-BP-4983-01 9 127620168 127620168 C A RPL35 3'UTR 0.08 TCGA-BP-4983-01 X 144337530 144337530 T C SPANXN1 3'UTR 0.05 TCGA-BP-4983-01 X 153130647 153130647 G A L1CAM Missense_Mutation p.A923V 0.09 tolerated(0.45) benign(0.013) TCGA-BP-4983-01 X 78426732 78426732 C A GPR174 Silent p.I76I 0.13 TCGA-BP-4983-01 X 83128044 83128044 C T CYLC1 Missense_Mutation p.L110F 0.12 tolerated(0.67) probably_damaging(0.986) TCGA-BP-4985-01 10 116444218 116444218 A T ABLIM1 5'UTR 0.19 TCGA-BP-4985-01 10 129202630 129202630 C T DOCK1 Silent p.I1332I 0.18 TCGA-BP-4985-01 10 69881502 69881502 G C MYPN Missense_Mutation p.D103H 0.16 deleterious(0.01) possibly_damaging(0.681) TCGA-BP-4985-01 10 70451380 70451382 AAG - TET1 In_Frame_Del p.K2074del 0.20 TCGA-BP-4985-01 10 81904026 81904026 G C PLAC9 Silent p.L70L 0.19 TCGA-BP-4985-01 10 95148802 95148802 C A MYOF Missense_Mutation p.E522D 0.16 tolerated(0.56) benign(0.007) TCGA-BP-4985-01 11 111625729 111625729 C T PPP2R1B Silent p.R311R 0.05 TCGA-BP-4985-01 11 111754535 111754535 T C C11orf1 Silent p.P128P 0.22 TCGA-BP-4985-01 11 118531943 118531943 G A TREH Silent p.N261N 0.37 TCGA-BP-4985-01 11 31284477 31284477 A C DCDC1 3'UTR 0.35 TCGA-BP-4985-01 11 45246528 45246528 G A PRDM11 3'UTR 0.23 TCGA-BP-4985-01 11 62300776 62300776 C A AHNAK Missense_Mutation p.K371N 0.09 probably_damaging(0.917) TCGA-BP-4985-01 11 65270615 65270615 T - MALAT1 RNA 0.16 TCGA-BP-4985-01 11 65386188 65386188 G A PCNXL3 Missense_Mutation p.C452Y 0.42 tolerated(0.06) possibly_damaging(0.85) TCGA-BP-4985-01 11 9048918 9048918 C A SCUBE2 Silent p.R841R 0.21 TCGA-BP-4985-01 12 38710783 38710783 G T ALG10B Missense_Mutation p.A30S 0.43 tolerated(0.44) benign(0.156) TCGA-BP-4985-01 12 7295471 7295472 - T CLSTN3 Frame_Shift_Ins p.L517Ffs*40 0.25 TCGA-BP-4985-01 12 80752068 80752068 T A OTOGL Missense_Mutation p.D2011E 0.09 tolerated(1) benign(0.007) TCGA-BP-4985-01 12 83290181 83290181 C G TMTC2 Missense_Mutation p.F413L 0.08 deleterious(0) probably_damaging(0.973) TCGA-BP-4985-01 12 8995734 8995734 A G A2ML1 Missense_Mutation p.K418R 0.08 tolerated(1) benign(0.001) TCGA-BP-4985-01 13 110437883 110437883 C G IRS2 Missense_Mutation p.G173A 0.55 tolerated(0.44) benign(0.018) TCGA-BP-4985-01 14 24808452 24808452 C T RIPK3 Silent p.E80E 0.44 TCGA-BP-4985-01 15 35196564 35196564 C T AQR Silent p.R658R 0.12 TCGA-BP-4985-01 15 40662245 40662245 A C DISP2 Missense_Mutation p.D1311A 0.36 deleterious_low_confidence(0.01) benign(0.138) TCGA-BP-4985-01 15 77241529 77241529 T G RCN2 Missense_Mutation p.L307R 0.32 deleterious(0) probably_damaging(0.999) TCGA-BP-4985-01 15 90785079 90785079 G T GDPGP1 Silent p.L313L 0.20 TCGA-BP-4985-01 16 27788272 27788272 C G KIAA0556 Missense_Mutation p.F1491L 0.04 deleterious(0) probably_damaging(0.998) TCGA-BP-4985-01 16 9943692 9943692 C T GRIN2A Missense_Mutation p.V417I 0.21 deleterious(0.02) probably_damaging(0.984) TCGA-BP-4985-01 17 11593618 11593618 G C DNAH9 Missense_Mutation p.E1493D 0.21 benign(0.029) TCGA-BP-4985-01 17 17078669 17078669 C A MPRIP Silent p.G884G 0.25 TCGA-BP-4985-01 17 20107798 20107798 C A SPECC1 Missense_Mutation p.H146N 0.14 tolerated(0.12) benign(0.005) TCGA-BP-4985-01 17 27233901 27233901 T A PHF12 Missense_Mutation p.I885F 0.25 deleterious(0.03) benign(0.302) TCGA-BP-4985-01 17 42636502 42636502 C T FZD2 Silent p.Y482Y 0.13 TCGA-BP-4985-01 17 56058037 56058037 G T VEZF1 Silent p.I301I 0.24 TCGA-BP-4985-01 17 61621018 61621018 T G KCNH6 Missense_Mutation p.S744A 0.07 tolerated(0.35) benign(0.002) TCGA-BP-4985-01 17 73565078 73565078 C T LLGL2 Missense_Mutation p.R448W 0.19 deleterious(0) probably_damaging(0.993) TCGA-BP-4985-01 17 74326133 74326133 G C PRPSAP1 Missense_Mutation p.A209G 0.03 tolerated(1) benign(0.005) TCGA-BP-4985-01 17 7681680 7681680 A G DNAH2 Missense_Mutation p.T1812A 0.09 probably_damaging(0.999) TCGA-BP-4985-01 18 32409025 32409025 G T DTNA Intron 0.17 TCGA-BP-4985-01 19 10476537 10476537 T C TYK2 Missense_Mutation p.I223V 0.44 deleterious(0) benign(0.424) TCGA-BP-4985-01 19 36605736 36605736 T A POLR2I Missense_Mutation p.E8V 0.38 tolerated(0.21) benign(0.051) TCGA-BP-4985-01 19 49601705 49601705 A G SNRNP70 Missense_Mutation p.N96S 0.05 tolerated(0.1) benign(0.104) TCGA-BP-4985-01 19 50358129 50358129 T C PTOV1 Missense_Mutation p.I145T 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-BP-4985-01 19 53668435 53668435 G T ZNF665 Silent p.G436G 0.29 TCGA-BP-4985-01 19 9067640 9067640 A G MUC16 Silent p.S6602S 0.38 TCGA-BP-4985-01 1 102302569 102302569 G C OLFM3 Missense_Mutation p.P28A 0.13 deleterious_low_confidence(0.01) benign(0.386) TCGA-BP-4985-01 1 110553967 110553967 A C AHCYL1 Missense_Mutation p.I122L 0.13 tolerated(0.17) benign(0.066) TCGA-BP-4985-01 1 165712544 165712544 C T TMCO1 Missense_Mutation p.D161N 0.16 tolerated(0.08) benign(0.059) TCGA-BP-4985-01 1 179833916 179833916 C A IFRG15 Nonstop_Mutation p.*132Yext*? 0.11 TCGA-BP-4985-01 1 183617328 183617328 C A APOBEC4 Missense_Mutation p.V197F 0.39 deleterious(0) benign(0.12) TCGA-BP-4985-01 1 185259906 185259906 T C SWT1 Missense_Mutation p.C892R 0.40 deleterious_low_confidence(0.05) benign(0.01) TCGA-BP-4985-01 1 248084574 248084574 C A OR2T8 Silent p.T85T 0.41 TCGA-BP-4985-01 1 42629119 42629119 G A GUCA2A Missense_Mutation p.P80S 0.13 tolerated(0.3) probably_damaging(0.936) TCGA-BP-4985-01 1 55166858 55166858 C T MROH7 Silent p.L1050L 0.27 TCGA-BP-4985-01 1 79101166 79101174 AGATATCAG - IFI44L In_Frame_Del p.R290_Q292del 0.14 TCGA-BP-4985-01 20 3211240 3211240 A G SLC4A11 Missense_Mutation p.W489R 0.09 deleterious(0.01) probably_damaging(0.981) TCGA-BP-4985-01 21 15599655 15599655 C A RBM11 3'UTR 0.21 TCGA-BP-4985-01 21 37603371 37603371 C T DOPEY2 Silent p.F763F 0.10 TCGA-BP-4985-01 21 43413025 43413025 C T ZBTB21 Missense_Mutation p.A394T 0.09 tolerated(0.18) benign(0.003) TCGA-BP-4985-01 22 51042064 51042064 A C MAPK8IP2 Missense_Mutation p.N153H 0.33 deleterious(0) probably_damaging(0.982) TCGA-BP-4985-01 2 109379898 109379898 A G RANBP2 Missense_Mutation p.Q968R 0.22 deleterious(0.01) benign(0.007) TCGA-BP-4985-01 2 152318926 152318926 G T RIF1 Missense_Mutation p.M1103I 0.12 tolerated(0.09) benign(0.005) TCGA-BP-4985-01 2 152318927 152318927 G A RIF1 Missense_Mutation p.E1104K 0.12 deleterious(0.05) benign(0.027) TCGA-BP-4985-01 2 219447763 219447763 A G RQCD1 Missense_Mutation p.N92D 0.03 deleterious(0.05) benign(0.36) TCGA-BP-4985-01 2 228228665 228228665 A T TM4SF20 Silent p.T155T 0.30 TCGA-BP-4985-01 2 237300665 237300665 T G IQCA1 Missense_Mutation p.D456A 0.12 deleterious(0) benign(0.213) TCGA-BP-4985-01 2 38797055 38797055 T C HNRNPLL Missense_Mutation p.K364E 0.32 deleterious(0) probably_damaging(0.97) TCGA-BP-4985-01 2 39250293 39250293 G T SOS1 Missense_Mutation p.Q426K 0.21 tolerated(0.07) possibly_damaging(0.504) TCGA-BP-4985-01 2 55795339 55795339 A - SMEK2 Frame_Shift_Del p.F642Lfs*2 0.16 TCGA-BP-4985-01 2 70529085 70529085 A T FAM136A Missense_Mutation p.L20Q 0.47 deleterious(0) probably_damaging(0.936) TCGA-BP-4985-01 2 80874879 80874879 C A CTNNA2 Missense_Mutation p.P867H 0.28 deleterious(0) probably_damaging(1) TCGA-BP-4985-01 3 10191515 10191550 GTCAAGCCTGAGAATTACAGGAGACTGGACATCGTC A VHL Frame_Shift_Del p.V170Kfs*74 0.43 TCGA-BP-4985-01 3 122433220 122433220 T C PARP14 Missense_Mutation p.L1315S 0.47 deleterious(0) probably_damaging(0.993) TCGA-BP-4985-01 3 190366339 190366339 G A IL1RAP Intron 0.43 TCGA-BP-4985-01 3 194177901 194177901 C T ATP13A3 Missense_Mutation p.G161E 0.10 tolerated(0.17) possibly_damaging(0.807) TCGA-BP-4985-01 3 33648252 33648252 T C CLASP2 Splice_Site p.X510_splice 0.10 TCGA-BP-4985-01 3 47912403 47912403 A T MAP4 Missense_Mutation p.L920H 0.35 tolerated(0.07) probably_damaging(0.95) TCGA-BP-4985-01 3 52436628 52436641 CAGCATGGAGATAA - BAP1 Frame_Shift_Del p.F678Cfs*34 0.32 TCGA-BP-4985-01 3 52623110 52623110 C A PBRM1 Nonsense_Mutation p.E981* 0.38 TCGA-BP-4985-01 4 109669293 109669293 C G ETNPPL Missense_Mutation p.C317S 0.13 tolerated(0.07) benign(0.118) TCGA-BP-4985-01 4 170663225 170663225 C T C4orf27 Silent p.T177T 0.26 TCGA-BP-4985-01 4 3208562 3208562 G T HTT Missense_Mutation p.C1976F 0.14 probably_damaging(0.995) TCGA-BP-4985-01 4 46060386 46060386 C T GABRG1 Missense_Mutation p.G255E 0.19 deleterious(0) possibly_damaging(0.756) TCGA-BP-4985-01 4 69962480 69962483 TAAC - UGT2B7 Frame_Shift_Del p.T82Kfs*40 0.17 TCGA-BP-4985-01 5 115177263 115177263 A T ATG12 5'UTR 0.27 TCGA-BP-4985-01 5 140228605 140228605 T C PCDHA9 Silent p.N175N 0.19 TCGA-BP-4985-01 5 140579545 140579545 G C PCDHB11 Silent p.V66V 0.34 TCGA-BP-4985-01 5 145524053 145524053 C T LARS Missense_Mutation p.C546Y 0.24 tolerated(0.06) benign(0.043) TCGA-BP-4985-01 5 156536031 156536031 T G HAVCR2 5'UTR 0.32 TCGA-BP-4985-01 5 37165738 37165738 T C C5orf42 Missense_Mutation p.K2479R 0.12 tolerated(0.12) benign(0.005) TCGA-BP-4985-01 5 82554530 82554530 T C XRCC4 Intron 0.30 TCGA-BP-4985-01 6 149691195 149691195 C G TAB2 Missense_Mutation p.P21R 0.64 deleterious(0) probably_damaging(0.956) TCGA-BP-4985-01 6 32047063 32047063 G A RNA5SP206 5'Flank 0.07 TCGA-BP-4985-01 6 44255550 44255550 C T TCTE1 Missense_Mutation p.V5I 0.11 tolerated_low_confidence(0.55) benign(0) TCGA-BP-4985-01 6 80635976 80635976 T A ELOVL4 Missense_Mutation p.M75L 0.11 tolerated(1) benign(0.001) TCGA-BP-4985-01 6 82925803 82925803 G A IBTK Missense_Mutation p.P531S 0.49 deleterious(0) probably_damaging(0.986) TCGA-BP-4985-01 7 123142671 123142671 G A IQUB Missense_Mutation p.H335Y 0.13 deleterious(0.01) possibly_damaging(0.797) TCGA-BP-4985-01 7 123346339 123346339 C G WASL Missense_Mutation p.R143T 0.13 deleterious(0) unknown(0) TCGA-BP-4985-01 7 137597645 137597645 C T CREB3L2 Intron 0.21 TCGA-BP-4985-01 7 138764442 138764442 G A ZC3HAV1 Silent p.G415G 0.26 TCGA-BP-4985-01 7 141672669 141672669 C T TAS2R38 Missense_Mutation p.R274H 0.26 tolerated(1) benign(0) TCGA-BP-4985-01 7 48312183 48312183 G A ABCA13 Missense_Mutation p.E974K 0.07 benign(0) TCGA-BP-4985-01 7 84694820 84694820 G C SEMA3D Missense_Mutation p.T213S 0.23 tolerated(0.92) benign(0.168) TCGA-BP-4985-01 8 100533198 100533198 A C VPS13B Missense_Mutation p.N1594H 0.42 deleterious(0) probably_damaging(0.979) TCGA-BP-4985-01 8 116599767 116599767 G C TRPS1 Missense_Mutation p.L721V 0.07 deleterious_low_confidence(0) benign(0.291) TCGA-BP-4985-01 8 144995815 144995815 G A PLEC Missense_Mutation p.T2862M 0.10 probably_damaging(0.999) TCGA-BP-4985-01 8 39775606 39775606 G A IDO1 Splice_Site p.X62_splice 0.52 TCGA-BP-4985-01 8 87242198 87242198 C T SLC7A13 Silent p.L103L 0.41 TCGA-BP-4985-01 8 94767208 94767208 G A TMEM67 Silent p.V22V 0.03 TCGA-BP-4985-01 9 139701099 139701099 T C CCDC183 Missense_Mutation p.M418T 0.40 tolerated(0.39) benign(0.002) TCGA-BP-4985-01 X 123197044 123197044 C T STAG2 Nonsense_Mutation p.R604* 0.67 TCGA-BP-4985-01 X 47101652 47101652 A - USP11 Frame_Shift_Del p.R494Gfs*47 0.19 TCGA-BP-4986-01 10 101961883 101961883 A - CHUK Frame_Shift_Del p.W511Gfs*46 0.19 TCGA-BP-4986-01 10 127705804 127705804 A T ADAM12 3'UTR 0.19 TCGA-BP-4986-01 10 6054846 6054846 T G IL2RA Silent p.R270R 0.24 TCGA-BP-4986-01 11 379656 379656 C T B4GALNT4 Missense_Mutation p.R815C 0.30 tolerated(0.08) unknown(0) TCGA-BP-4986-01 13 39451280 39451280 T C FREM2 Silent p.F2857F 0.20 TCGA-BP-4986-01 14 62212466 62212466 C - HIF1A Frame_Shift_Del p.R778Vfs*2 0.09 TCGA-BP-4986-01 15 42035185 42035185 C G MGA Missense_Mutation p.P1676R 0.21 deleterious(0) possibly_damaging(0.779) TCGA-BP-4986-01 15 59506883 59506883 A G MYO1E Missense_Mutation p.Y382H 0.24 tolerated(0.25) possibly_damaging(0.827) TCGA-BP-4986-01 15 90815002 90815005 CTTC - NGRN Frame_Shift_Del p.F287Cfs*35 0.29 TCGA-BP-4986-01 15 90815014 90815014 A G NGRN Silent p.R290R 0.23 TCGA-BP-4986-01 17 21319528 21319528 G A KCNJ12 Missense_Mutation p.D292N 0.16 tolerated(0.1) benign(0.02) TCGA-BP-4986-01 17 77926601 77926601 C G TBC1D16 Missense_Mutation p.D266H 0.26 tolerated(0.06) probably_damaging(0.921) TCGA-BP-4986-01 19 16536069 16536069 G A EPS15L1 Missense_Mutation p.P206L 0.36 tolerated(0.07) benign(0.008) TCGA-BP-4986-01 19 38985048 38985048 G A RYR1 Missense_Mutation p.V2111M 0.17 benign(0.094) TCGA-BP-4986-01 19 39008218 39008218 C A RYR1 Missense_Mutation p.P3302Q 0.44 benign(0.003) TCGA-BP-4986-01 19 44660625 44660625 G C ZNF234 Missense_Mutation p.E152D 0.08 tolerated(0.12) benign(0.002) TCGA-BP-4986-01 19 50549932 50549932 G C ZNF473 Missense_Mutation p.E744D 0.21 tolerated(0.26) possibly_damaging(0.523) TCGA-BP-4986-01 19 50905747 50905747 G A POLD1 Nonsense_Mutation p.W265* 0.38 TCGA-BP-4986-01 1 1459280 1459280 G A ATAD3A Missense_Mutation p.R390H 0.27 tolerated(0.18) benign(0.006) TCGA-BP-4986-01 1 172411549 172411549 A T PIGC Missense_Mutation p.W72R 0.22 deleterious(0) possibly_damaging(0.789) TCGA-BP-4986-01 1 183532672 183532672 T A NCF2 Nonsense_Mutation p.K359* 0.24 TCGA-BP-4986-01 1 18807868 18807868 G A KLHDC7A Silent p.S131S 0.46 TCGA-BP-4986-01 1 224377767 224377767 G A DEGS1 Missense_Mutation p.V191M 0.22 tolerated(0.06) benign(0.149) TCGA-BP-4986-01 1 248756885 248756885 A C OR2T10 Missense_Mutation p.F62C 0.26 deleterious(0.01) benign(0.234) TCGA-BP-4986-01 1 249142611 249142612 - C ZNF672 Frame_Shift_Ins p.K381Qfs*59 0.14 TCGA-BP-4986-01 20 44567623 44567623 C A PCIF1 5'UTR 0.06 TCGA-BP-4986-01 22 30032866 30032867 GT - NF2 Splice_Site p.X80_splice 0.33 TCGA-BP-4986-01 2 179664360 179664360 C T TTN Silent p.R256R 0.32 TCGA-BP-4986-01 2 220290785 220290785 C T DES 3'UTR 0.26 TCGA-BP-4986-01 2 27457500 27457500 G A CAD Missense_Mutation p.E1245K 0.34 tolerated(0.86) possibly_damaging(0.507) TCGA-BP-4986-01 2 45879259 45879259 T A PRKCE Missense_Mutation p.L7H 0.28 tolerated(0.5) possibly_damaging(0.512) TCGA-BP-4986-01 2 64160992 64160992 T C VPS54 Missense_Mutation p.I518M 0.27 deleterious(0) benign(0.413) TCGA-BP-4986-01 3 10188262 10188262 A TT VHL Frame_Shift_Ins p.L135Ffs*9 0.22 TCGA-BP-4986-01 3 113667569 113667569 C T ZDHHC23 Intron 0.35 TCGA-BP-4986-01 4 187208887 187208887 C T F11 Silent p.N542N 0.31 TCGA-BP-4986-01 4 20255582 20255582 C G SLIT2 Missense_Mutation p.S48R 0.06 tolerated(0.36) benign(0.051) TCGA-BP-4986-01 4 62362891 62362891 T C LPHN3 5'UTR 0.18 TCGA-BP-4986-01 4 66213782 66213782 G C EPHA5 Missense_Mutation p.T883S 0.24 tolerated(1) benign(0.003) TCGA-BP-4986-01 4 71510239 71510239 C A ENAM Silent p.G1032G 0.29 TCGA-BP-4986-01 5 140230078 140230078 G A PCDHA9 Silent p.L666L 0.45 TCGA-BP-4986-01 5 140682821 140682821 T G SLC25A2 Missense_Mutation p.K204N 0.16 deleterious(0.02) benign(0.259) TCGA-BP-4986-01 5 43555964 43555964 A T PAIP1 Missense_Mutation p.F135I 0.20 deleterious(0) probably_damaging(1) TCGA-BP-4986-01 6 117113395 117113395 A G GPRC6A Silent p.D897D 0.07 TCGA-BP-4986-01 6 28227271 28227271 C T NKAPL Missense_Mutation p.S41F 0.19 tolerated(0.17) unknown(0) TCGA-BP-4986-01 6 32943251 32943251 A G BRD2 Missense_Mutation p.M142V 0.17 tolerated(0.06) benign(0.168) TCGA-BP-4986-01 6 36930968 36930968 G A PI16 Missense_Mutation p.V284I 0.07 tolerated(0.09) benign(0.016) TCGA-BP-4986-01 6 84894950 84894950 T C KIAA1009 Missense_Mutation p.K540E 0.12 tolerated(0.13) benign(0.011) TCGA-BP-4986-01 7 108155092 108155092 A C PNPLA8 Missense_Mutation p.S282A 0.28 tolerated(0.06) possibly_damaging(0.463) TCGA-BP-4986-01 7 6838811 6838811 T C CCZ1B 3'UTR 0.24 TCGA-BP-4986-01 8 145007369 145007369 G A PLEC Missense_Mutation p.R609C 0.39 unknown(0) TCGA-BP-4986-01 X 228267 228267 G A GTPBP6 Missense_Mutation p.T86M 0.09 deleterious(0.01) possibly_damaging(0.818) TCGA-BP-4986-01 X 23704501 23704501 C T PRDX4 3'UTR 0.55 TCGA-BP-4986-01 X 80377126 80377145 AAATGAGTTTTCAATGAACT - HMGN5 5'UTR 0.58 TCGA-BP-4987-01 11 71939276 71939278 AGA - INPPL1 In_Frame_Del p.E76del 0.35 TCGA-BP-4987-01 12 107254049 107254053 ATAGT - RIC8B Frame_Shift_Del p.D437Afs*27 0.24 TCGA-BP-4987-01 12 132633361 132633361 G T NOC4L Silent p.L274L 0.11 TCGA-BP-4987-01 13 52539025 52539025 T C ATP7B Missense_Mutation p.I618V 0.09 tolerated(0.08) benign(0.125) TCGA-BP-4987-01 14 106322164 106322164 G A IGHM Missense_Mutation p.R54W 0.26 deleterious(0.03) benign(0.001) TCGA-BP-4987-01 14 21771589 21771589 C T RPGRIP1 Silent p.S229S 0.36 TCGA-BP-4987-01 14 64447732 64447732 G A SYNE2 Silent p.Q559Q 0.30 TCGA-BP-4987-01 16 231174 231174 G A HBQ1 3'UTR 0.05 TCGA-BP-4987-01 16 30976668 30976668 G A SETD1A Silent p.G535G 0.04 TCGA-BP-4987-01 17 45377874 45377874 G C ITGB3 Silent p.R648R 0.26 TCGA-BP-4987-01 17 75484940 75484940 G A SEPT9 Missense_Mutation p.G419D 0.10 deleterious(0) probably_damaging(1) TCGA-BP-4987-01 19 38985140 38985140 G A RYR1 Silent p.A2141A 0.19 TCGA-BP-4987-01 19 4325497 4325497 G T STAP2 Missense_Mutation p.S292Y 0.35 deleterious(0) possibly_damaging(0.904) TCGA-BP-4987-01 19 52195904 52195904 G A SPACA6P-AS RNA 0.08 TCGA-BP-4987-01 1 155240724 155240729 CCGGCT - CLK2 In_Frame_Del p.S14_R15del 0.32 TCGA-BP-4987-01 1 235658028 235658028 T A B3GALNT2 Missense_Mutation p.M75L 0.03 tolerated(1) benign(0) TCGA-BP-4987-01 1 62943523 62943523 G A DOCK7 Intron 0.03 TCGA-BP-4987-01 1 65310524 65310524 G - JAK1 Frame_Shift_Del p.L722Wfs*49 0.22 TCGA-BP-4987-01 1 89847441 89847441 G A GBP6 Missense_Mutation p.D354N 0.23 tolerated(0.06) benign(0.063) TCGA-BP-4987-01 20 30037860 30037860 T A DEFB123 Nonsense_Mutation p.Y29* 0.12 TCGA-BP-4987-01 20 34021690 34021690 A C GDF5 3'UTR 0.24 TCGA-BP-4987-01 22 21104191 21104191 A G PI4KA Splice_Site p.X1081_splice 0.24 TCGA-BP-4987-01 2 32323916 32323916 A G SPAST Missense_Mutation p.N213S 0.12 tolerated(0.62) benign(0.001) TCGA-BP-4987-01 2 99163131 99163131 G A INPP4A Silent p.L379L 0.06 TCGA-BP-4987-01 3 121415221 121415221 T C GOLGB1 Silent p.Q1383Q 0.29 TCGA-BP-4987-01 3 52712580 52712580 G A PBRM1 Nonsense_Mutation p.R58* 0.43 TCGA-BP-4987-01 4 23833232 23833232 G T PPARGC1A Missense_Mutation p.S126Y 0.13 deleterious(0.01) possibly_damaging(0.825) TCGA-BP-4987-01 4 94376877 94376877 C T GRID2 Missense_Mutation p.T537M 0.18 deleterious(0) probably_damaging(1) TCGA-BP-4987-01 5 140181824 140181824 C T PCDHA3 Missense_Mutation p.P348S 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BP-4987-01 5 146077636 146077636 G A PPP2R2B Silent p.F83F 0.30 TCGA-BP-4987-01 6 33288164 33288164 G A DAXX Missense_Mutation p.S415F 0.04 deleterious(0.01) probably_damaging(0.919) TCGA-BP-4987-01 7 47897277 47897277 G C PKD1L1 Missense_Mutation p.Q1506E 0.22 tolerated(0.11) benign(0.053) TCGA-BP-4987-01 8 113243821 113243821 C A CSMD3 Missense_Mutation p.G3594V 0.24 deleterious(0) possibly_damaging(0.492) TCGA-BP-4987-01 8 42591917 42591917 G A CHRNB3 3'UTR 0.29 TCGA-BP-4987-01 9 21409486 21409486 T A IFNA8 Missense_Mutation p.L104H 0.30 deleterious(0.02) possibly_damaging(0.557) TCGA-BP-4987-01 X 50376678 50376678 T A SHROOM4 Missense_Mutation p.T799S 0.13 tolerated(0.62) benign(0.156) TCGA-BP-4987-01 X 70342188 70342188 A G MED12 Missense_Mutation p.T414A 0.27 possibly_damaging(0.489) TCGA-BP-4987-01 X 96724700 96724700 T G DIAPH2 Intron 0.05 TCGA-BP-4988-01 10 105758918 105758918 G A SLK Missense_Mutation p.R210K 0.06 tolerated(0.2) probably_damaging(0.992) TCGA-BP-4988-01 10 118661447 118661447 G C KIAA1598 Missense_Mutation p.T501S 0.08 tolerated(0.09) probably_damaging(0.987) TCGA-BP-4988-01 10 60588657 60588657 C A BICC1 3'UTR 0.22 TCGA-BP-4988-01 11 108141874 108141874 G A ATM Splice_Site p.X974_splice 0.09 TCGA-BP-4988-01 11 111724387 111724387 G T ALG9 Silent p.A87A 0.07 TCGA-BP-4988-01 11 5624933 5624933 T G TRIM6 Missense_Mutation p.F159V 0.09 tolerated(0.13) benign(0.035) TCGA-BP-4988-01 12 120586152 120586152 T C GCN1L1 Splice_Site p.X1516_splice 0.15 TCGA-BP-4988-01 12 13093773 13093773 G C GPRC5D Missense_Mutation p.P325R 0.05 deleterious(0) benign(0.143) TCGA-BP-4988-01 12 56865561 56865561 C A GLS2 Missense_Mutation p.D550Y 0.08 deleterious(0) probably_damaging(0.997) TCGA-BP-4988-01 12 63042320 63042320 G A PPM1H Silent p.D498D 0.07 TCGA-BP-4988-01 13 79212988 79212988 T G RNF219 Missense_Mutation p.K173N 0.11 deleterious(0) probably_damaging(0.991) TCGA-BP-4988-01 14 103805214 103805214 T A EIF5 Missense_Mutation p.L243H 0.05 deleterious(0) possibly_damaging(0.885) TCGA-BP-4988-01 14 105417156 105417156 C A AHNAK2 Missense_Mutation p.Q1544H 0.04 probably_damaging(0.973) TCGA-BP-4988-01 14 23533399 23533399 G C ACIN1 Missense_Mutation p.S895C 0.16 probably_damaging(0.954) TCGA-BP-4988-01 14 61920051 61920051 G A PRKCH Missense_Mutation p.G314R 0.05 tolerated(0.08) possibly_damaging(0.9) TCGA-BP-4988-01 15 72039333 72039333 C T THSD4 Silent p.C731C 0.21 TCGA-BP-4988-01 16 21261470 21261470 G A ANKS4B Missense_Mutation p.G195R 0.20 tolerated(0.06) probably_damaging(1) TCGA-BP-4988-01 16 27790014 27790014 G T KIAA0556 3'UTR 0.06 TCGA-BP-4988-01 16 81157278 81157278 C G PKD1L2 RNA 0.05 TCGA-BP-4988-01 17 26975892 26975892 C T SDF2 3'UTR 0.17 TCGA-BP-4988-01 17 48433278 48433278 G A XYLT2 Missense_Mutation p.V409M 0.23 deleterious(0.01) possibly_damaging(0.867) TCGA-BP-4988-01 17 73729634 73729634 G A ITGB4 Silent p.E506E 0.10 TCGA-BP-4988-01 17 75209464 75209464 C T SEC14L1 Silent p.C644C 0.08 TCGA-BP-4988-01 18 77477938 77477938 A T CTDP1 Missense_Mutation p.K780M 0.11 deleterious(0) probably_damaging(1) TCGA-BP-4988-01 18 77477956 77477956 C T CTDP1 Missense_Mutation p.A786V 0.10 tolerated_low_confidence(0.24) benign(0.02) TCGA-BP-4988-01 19 12298092 12298092 G A ZNF136 Missense_Mutation p.R300K 0.08 tolerated(0.09) possibly_damaging(0.517) TCGA-BP-4988-01 19 12383395 12383395 G A ZNF44 Missense_Mutation p.P607S 0.15 deleterious(0.02) benign(0.012) TCGA-BP-4988-01 1 178753614 178753614 C A RALGPS2 Missense_Mutation p.A40D 0.08 deleterious(0) benign(0.334) TCGA-BP-4988-01 1 224418928 224418929 - TT NVL Frame_Shift_Ins p.D843Rfs*38 0.10 TCGA-BP-4988-01 1 246923346 246923346 A T SCCPDH Missense_Mutation p.R301W 0.14 deleterious(0.02) benign(0.035) TCGA-BP-4988-01 1 47498916 47498916 A C CYP4X1 Missense_Mutation p.K123T 0.17 tolerated(0.2) possibly_damaging(0.606) TCGA-BP-4988-01 1 61921045 61921045 T C NFIA 3'UTR 0.07 TCGA-BP-4988-01 20 24944491 24944491 G C APMAP Missense_Mutation p.F403L 0.06 deleterious(0.03) possibly_damaging(0.564) TCGA-BP-4988-01 2 136566891 136566891 G T LCT Missense_Mutation p.A1009E 0.12 tolerated(0.39) benign(0.17) TCGA-BP-4988-01 2 170060531 170060531 C A LRP2 Nonsense_Mutation p.E2656* 0.14 TCGA-BP-4988-01 2 20097726 20097729 AATC - TTC32 Frame_Shift_Del p.D73Ffs*12 0.08 TCGA-BP-4988-01 2 3193089 3193089 A T TSSC1 3'UTR 0.19 TCGA-BP-4988-01 2 61571006 61571006 T C USP34 Missense_Mutation p.H815R 0.08 deleterious(0.01) benign(0.134) TCGA-BP-4988-01 3 10191480 10191480 T C VHL Missense_Mutation p.L158P 0.12 deleterious(0) probably_damaging(0.997) TCGA-BP-4988-01 3 10191481 10191481 G C VHL Silent p.L158L 0.14 TCGA-BP-4988-01 3 1363473 1363473 A G CNTN6 Missense_Mutation p.N301D 0.11 deleterious(0) probably_damaging(0.998) TCGA-BP-4988-01 3 184102984 184102984 G T CHRD Silent p.T592T 0.12 TCGA-BP-4988-01 3 193188727 193188727 C A ATP13A4 Missense_Mutation p.L288F 0.09 deleterious(0.01) probably_damaging(0.973) TCGA-BP-4988-01 3 52643348 52643348 G A PBRM1 Nonsense_Mutation p.R850* 0.13 TCGA-BP-4988-01 3 9986117 9986117 A G CRELD1 3'UTR 0.10 TCGA-BP-4988-01 4 128841922 128841922 G - MFSD8 Frame_Shift_Del p.Q474Kfs*18 0.09 TCGA-BP-4988-01 4 134071487 134071487 A C PCDH10 Missense_Mutation p.L64F 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-BP-4988-01 4 13605133 13605133 C T BOD1L1 Missense_Mutation p.V1131M 0.08 benign(0.413) TCGA-BP-4988-01 4 164393928 164393928 G A TKTL2 Missense_Mutation p.A320V 0.05 deleterious(0) probably_damaging(0.962) TCGA-BP-4988-01 4 47033947 47033947 A C GABRB1 Missense_Mutation p.N33H 0.07 tolerated(0.12) benign(0.052) TCGA-BP-4988-01 5 100147701 100147701 T - ST8SIA4 Frame_Shift_Del p.A311Rfs*10 0.14 TCGA-BP-4988-01 5 122911473 122911473 A G CSNK1G3 Silent p.V163V 0.09 TCGA-BP-4988-01 5 139422002 139422002 C T NRG2 Missense_Mutation p.G218D 0.17 deleterious(0.04) benign(0.164) TCGA-BP-4988-01 5 171661293 171661293 T C UBTD2 Missense_Mutation p.D47G 0.06 deleterious(0.04) benign(0.058) TCGA-BP-4988-01 5 176637818 176637818 A C NSD1 Silent p.I806I 0.20 TCGA-BP-4988-01 6 16326679 16326679 G C ATXN1 Missense_Mutation p.S621R 0.06 deleterious(0.04) possibly_damaging(0.851) TCGA-BP-4988-01 6 69349081 69349081 T C BAI3 Missense_Mutation p.C172R 0.06 deleterious(0) probably_damaging(0.974) TCGA-BP-4988-01 6 96053648 96053648 C G MANEA Nonsense_Mutation p.Y252* 0.06 TCGA-BP-4988-01 7 97920501 97920502 CT - BRI3 Frame_Shift_Del p.C108Wfs*34 0.09 TCGA-BP-4988-01 8 141415691 141415691 A G TRAPPC9 Silent p.I429I 0.20 TCGA-BP-4988-01 8 48309113 48309113 T C SPIDR Silent p.L235L 0.11 TCGA-BP-4988-01 8 88885732 88885732 G A DCAF4L2 Silent p.A156A 0.12 TCGA-BP-4988-01 9 116345959 116345959 C T RGS3 Missense_Mutation p.P756L 0.04 tolerated_low_confidence(0.06) benign(0.048) TCGA-BP-4988-01 9 134077067 134077067 G C NUP214 Missense_Mutation p.G1852A 0.07 probably_damaging(0.959) TCGA-BP-4988-01 9 84607804 84607804 A T SPATA31D1 Missense_Mutation p.T807S 0.11 tolerated(1) benign(0.004) TCGA-BP-4988-01 X 70472956 70472956 A G ZMYM3 Silent p.P50P 0.20 TCGA-BP-4989-01 10 24834980 24834980 C A KIAA1217 Silent p.L1853L 0.26 TCGA-BP-4989-01 10 31138528 31138528 A G ZNF438 Missense_Mutation p.M269T 0.26 tolerated(0.12) benign(0.001) TCGA-BP-4989-01 10 75673067 75673067 C T PLAU Nonsense_Mutation p.R130* 0.26 TCGA-BP-4989-01 11 4661302 4661302 G T OR51D1 Missense_Mutation p.M94I 0.21 tolerated(0.51) benign(0.002) TCGA-BP-4989-01 11 73638349 73638349 A T PAAF1 Missense_Mutation p.Q374L 0.16 tolerated(0.65) benign(0.107) TCGA-BP-4989-01 11 77812070 77812070 C A ALG8 Missense_Mutation p.W507C 0.18 deleterious(0) probably_damaging(0.992) TCGA-BP-4989-01 12 19410396 19410396 T C PLEKHA5 Silent p.N154N 0.20 TCGA-BP-4989-01 12 48921863 48921863 G A OR8S1 Missense_Mutation p.A353T 0.27 benign(0.003) TCGA-BP-4989-01 12 52756641 52756641 G T KRT85 Nonsense_Mutation p.C358* 0.22 TCGA-BP-4989-01 12 53069018 53069018 C T KRT1 Missense_Mutation p.V632M 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-BP-4989-01 12 56487573 56487573 A G ERBB3 Silent p.P502P 0.16 TCGA-BP-4989-01 12 6688041 6688041 T G CHD4 Missense_Mutation p.D1651A 0.17 tolerated(0.13) benign(0.005) TCGA-BP-4989-01 13 30091722 30091722 T C SLC7A1 Missense_Mutation p.T500A 0.10 tolerated(1) benign(0.001) TCGA-BP-4989-01 13 67205519 67205519 G A PCDH9 Missense_Mutation p.L1055F 0.16 deleterious(0.01) benign(0.446) TCGA-BP-4989-01 14 104129226 104129226 C T KLC1 Silent p.D253D 0.32 TCGA-BP-4989-01 14 24608257 24608257 G C EMC9 Missense_Mutation p.Q197E 0.11 tolerated(0.91) benign(0.004) TCGA-BP-4989-01 15 25334928 25334928 C - SNORD116-23 5'Flank 0.29 TCGA-BP-4989-01 15 75650634 75650634 C G MAN2C1 Missense_Mutation p.V836L 0.20 tolerated(0.08) benign(0.381) TCGA-BP-4989-01 15 81589274 81589274 G A IL16 Silent p.A636A 0.15 TCGA-BP-4989-01 16 16244592 16244592 G T ABCC6 Missense_Mutation p.L1416I 0.16 deleterious(0) probably_damaging(0.979) TCGA-BP-4989-01 16 32077410 32077410 G T IGHV3OR16-9 Nonsense_Mutation p.G9* 0.19 TCGA-BP-4989-01 16 396290 396290 C T AXIN1 Missense_Mutation p.E246K 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-BP-4989-01 16 396291 396291 C T AXIN1 Silent p.E245E 0.09 TCGA-BP-4989-01 16 5050877 5050877 G A SEC14L5 Missense_Mutation p.G361R 0.44 deleterious(0) benign(0.053) TCGA-BP-4989-01 16 77776033 77776033 T G NUDT7 3'UTR 0.50 TCGA-BP-4989-01 17 46608210 46608210 G T HOXB1 Silent p.P19P 0.24 TCGA-BP-4989-01 17 51900736 51900736 A C KIF2B Missense_Mutation p.K114N 0.25 tolerated(0.62) benign(0.055) TCGA-BP-4989-01 17 72249930 72249930 C T TTYH2 Silent p.Y494Y 0.13 TCGA-BP-4989-01 19 10799269 10799269 C T ILF3 Silent p.G826G 0.18 TCGA-BP-4989-01 19 37004832 37004832 T C ZNF260 3'UTR 0.23 TCGA-BP-4989-01 19 44251655 44251655 C T SMG9 Missense_Mutation p.R176H 0.07 tolerated(0.06) benign(0.143) TCGA-BP-4989-01 19 47856562 47856562 C T DHX34 Missense_Mutation p.A92V 0.17 tolerated(0.21) benign(0.021) TCGA-BP-4989-01 19 57065721 57065721 C A ZFP28 Missense_Mutation p.H523N 0.24 deleterious(0) probably_damaging(0.999) TCGA-BP-4989-01 1 9790454 9790454 T G CLSTN1 3'UTR 0.57 TCGA-BP-4989-01 20 14307334 14307334 G C FLRT3 Silent p.L273L 0.27 TCGA-BP-4989-01 20 33026405 33026405 A G ITCH Silent p.S257S 0.05 TCGA-BP-4989-01 21 30693729 30693729 A G BACH1 Missense_Mutation p.Q43R 0.20 tolerated(0.3) benign(0.004) TCGA-BP-4989-01 21 31744251 31744251 G A KRTAP13-2 Missense_Mutation p.T94M 0.20 tolerated(0.06) benign(0.223) TCGA-BP-4989-01 21 40590148 40590148 A G BRWD1 Missense_Mutation p.Y1197H 0.22 deleterious(0) probably_damaging(0.999) TCGA-BP-4989-01 21 47542030 47542030 C T COL6A2 Silent p.P510P 0.20 TCGA-BP-4989-01 22 21991352 21991352 G T CCDC116 Missense_Mutation p.G612V 0.20 deleterious_low_confidence(0.04) unknown(0) TCGA-BP-4989-01 2 168101917 168101917 A T XIRP2 Nonsense_Mutation p.K1339* 0.13 TCGA-BP-4989-01 2 171243748 171243748 A G MYO3B Missense_Mutation p.T503A 0.17 tolerated(0.25) benign(0.008) TCGA-BP-4989-01 2 179484439 179484439 T C TTN Silent p.R15535R 0.20 TCGA-BP-4989-01 2 179504809 179504809 G A TTN Silent p.L13584L 0.21 TCGA-BP-4989-01 2 216262451 216262451 T C FN1 Missense_Mutation p.R1157G 0.32 tolerated(0.33) benign(0.112) TCGA-BP-4989-01 3 10188202 10188202 C - VHL Frame_Shift_Del p.L116Ffs*43 0.24 TCGA-BP-4989-01 3 122134164 122134164 T C WDR5B Missense_Mutation p.Y71C 0.25 tolerated(0.17) benign(0.006) TCGA-BP-4989-01 3 153994678 153994678 T C DHX36 Missense_Mutation p.Y900C 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-BP-4989-01 3 185882703 185882703 C T DGKG Missense_Mutation p.A734T 0.18 tolerated(0.09) benign(0.014) TCGA-BP-4989-01 3 26751684 26751684 C A LRRC3B Missense_Mutation p.T174K 0.35 deleterious(0) benign(0.268) TCGA-BP-4989-01 3 48461035 48461035 A G PLXNB1 Missense_Mutation p.L887P 0.25 tolerated(0.11) probably_damaging(0.972) TCGA-BP-4989-01 3 52610639 52610640 CT - PBRM1 Frame_Shift_Del p.E1178Afs*2 0.17 TCGA-BP-4989-01 3 74350836 74350836 C T CNTN3 Missense_Mutation p.R636Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-BP-4989-01 3 78706388 78706388 T C ROBO1 Missense_Mutation p.H825R 0.35 deleterious(0.01) probably_damaging(0.979) TCGA-BP-4989-01 3 78706390 78706390 G T ROBO1 Nonsense_Mutation p.Y824* 0.35 TCGA-BP-4989-01 4 110402835 110402835 G A SEC24B Missense_Mutation p.V355M 0.20 tolerated_low_confidence(1) benign(0.002) TCGA-BP-4989-01 4 134072133 134072133 G A PCDH10 Missense_Mutation p.G280S 0.31 deleterious(0) probably_damaging(1) TCGA-BP-4989-01 4 183714119 183714119 C G TENM3 Silent p.L2098L 0.38 TCGA-BP-4989-01 4 2674032 2674032 T C FAM193A Missense_Mutation p.V464A 0.45 deleterious(0.01) possibly_damaging(0.761) TCGA-BP-4989-01 4 8584304 8584304 G A GPR78 Missense_Mutation p.A239T 0.13 deleterious(0) probably_damaging(0.998) TCGA-BP-4989-01 5 110409085 110409086 CT - TSLP Intron 0.47 TCGA-BP-4989-01 5 140182765 140182765 C A PCDHA3 Silent p.A661A 0.22 TCGA-BP-4989-01 5 140216218 140216218 C A PCDHA7 Missense_Mutation p.F750L 0.31 deleterious_low_confidence(0.05) benign(0.003) TCGA-BP-4989-01 5 153432673 153432673 C T MFAP3 Silent p.L163L 0.35 TCGA-BP-4989-01 5 168114104 168114104 C T SLIT3 Missense_Mutation p.G1065D 0.18 deleterious(0) probably_damaging(1) TCGA-BP-4989-01 5 169535223 169535223 C G FOXI1 Missense_Mutation p.Q249E 0.08 tolerated(1) benign(0.156) TCGA-BP-4989-01 5 180056415 180056415 T G FLT4 Missense_Mutation p.K277Q 0.31 tolerated(0.26) benign(0.016) TCGA-BP-4989-01 5 2755174 2755174 C T C5orf38 3'UTR 0.31 TCGA-BP-4989-01 5 83356228 83356228 G A EDIL3 Missense_Mutation p.T343M 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-BP-4989-01 6 131931276 131931276 G T MED23 Silent p.L329L 0.10 TCGA-BP-4989-01 6 150004564 150004564 C T LATS1 Missense_Mutation p.G554E 0.22 tolerated(0.08) probably_damaging(1) TCGA-BP-4989-01 6 17898399 17898399 C T KIF13A Silent p.K53K 0.18 TCGA-BP-4989-01 6 71186969 71186969 T G FAM135A Missense_Mutation p.F159C 0.17 deleterious(0) probably_damaging(0.999) TCGA-BP-4989-01 6 89888680 89888680 C G GABRR1 Missense_Mutation p.G417R 0.16 tolerated(0.19) probably_damaging(0.988) TCGA-BP-4989-01 6 99365256 99365256 A C FBXL4 Silent p.P284P 0.17 TCGA-BP-4989-01 7 104719411 104719411 G A KMT2E Splice_Site p.X416_splice 0.18 TCGA-BP-4989-01 7 143929685 143929685 G T OR2A42 Silent p.L84L 0.13 TCGA-BP-4989-01 7 157178362 157178362 A - DNAJB6 Intron 0.32 TCGA-BP-4989-01 9 116299108 116299108 C G RGS3 Missense_Mutation p.H649Q 0.21 deleterious(0.01) possibly_damaging(0.759) TCGA-BP-4989-01 9 71628614 71628614 C T PRKACG Missense_Mutation p.R132H 0.25 tolerated(1) benign(0) TCGA-BP-4989-01 9 78925759 78925759 G A PCSK5 Silent p.K1265K 0.50 TCGA-BP-4989-01 X 106186437 106186437 T A MORC4 Splice_Site p.X562_splice 0.16 TCGA-BP-4989-01 X 118140161 118140161 A G LONRF3 Missense_Mutation p.N498S 0.41 tolerated(0.08) probably_damaging(0.999) TCGA-BP-4989-01 X 131212433 131212433 T G FRMD7 Missense_Mutation p.I538L 0.49 tolerated(0.83) benign(0.003) TCGA-BP-4991-01 10 35495906 35495906 G A CREM Missense_Mutation p.G228R 0.34 tolerated(0.05) probably_damaging(0.981) TCGA-BP-4991-01 10 49420020 49420020 C G FRMPD2 Missense_Mutation p.D530H 0.28 deleterious(0) probably_damaging(0.988) TCGA-BP-4991-01 10 49420021 49420021 C T FRMPD2 Silent p.E529E 0.28 TCGA-BP-4991-01 11 117352764 117352764 C A DSCAML1 Missense_Mutation p.G885W 0.24 deleterious(0) probably_damaging(0.994) TCGA-BP-4991-01 11 18301346 18301346 C A HPS5 3'UTR 0.31 TCGA-BP-4991-01 11 4674482 4674482 T G OR51E1 Silent p.T242T 0.30 TCGA-BP-4991-01 11 58391797 58391797 C G CNTF Silent p.P135P 0.07 TCGA-BP-4991-01 12 4479729 4479729 C T FGF23 Missense_Mutation p.R179Q 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-BP-4991-01 12 94642074 94642074 A C PLXNC1 Missense_Mutation p.Q888H 0.32 tolerated(0.14) benign(0.289) TCGA-BP-4991-01 12 98995243 98995244 - C SLC25A3 Frame_Shift_Ins p.R344Sfs*33 0.19 TCGA-BP-4991-01 13 47470003 47470003 T A HTR2A Silent p.S13S 0.08 TCGA-BP-4991-01 14 23608686 23608686 A G SLC7A8 Missense_Mutation p.Y287H 0.27 deleterious(0) probably_damaging(1) TCGA-BP-4991-01 14 94844895 94844895 G T SERPINA1 Missense_Mutation p.S383Y 0.27 tolerated(0.09) benign(0.175) TCGA-BP-4991-01 14 96757148 96757148 C A ATG2B Intron 0.24 TCGA-BP-4991-01 15 29346935 29346935 C T APBA2 Missense_Mutation p.S283L 0.31 deleterious_low_confidence(0) benign(0.152) TCGA-BP-4991-01 15 83805262 83805262 T A TM6SF1 Silent p.L317L 0.29 TCGA-BP-4991-01 15 89449935 89449935 G A MFGE8 Silent p.Y154Y 0.27 TCGA-BP-4991-01 16 21151927 21151927 A C DNAH3 Missense_Mutation p.L209R 0.19 tolerated(0.28) benign(0.001) TCGA-BP-4991-01 16 67980916 67980916 T G SLC12A4 Missense_Mutation p.K724T 0.20 deleterious(0) probably_damaging(1) TCGA-BP-4991-01 16 722787 722787 G A RHOT2 Missense_Mutation p.D497N 0.10 tolerated(0.77) benign(0.015) TCGA-BP-4991-01 17 28405489 28405489 G A EFCAB5 Silent p.P998P 0.26 TCGA-BP-4991-01 17 34171725 34171725 C T TAF15 Silent p.D474D 0.26 TCGA-BP-4991-01 17 39635602 39635602 C T KRT35 Silent p.E236E 0.28 TCGA-BP-4991-01 17 46805884 46805884 C T HOXB13 Silent p.G24G 0.24 TCGA-BP-4991-01 17 48940796 48940797 TA - TOB1 Frame_Shift_Del p.N194Kfs*4 0.25 TCGA-BP-4991-01 17 54985850 54985850 T G TRIM25 Missense_Mutation p.R224S 0.25 deleterious(0.05) benign(0.434) TCGA-BP-4991-01 17 56350261 56350261 A G MPO Missense_Mutation p.L547P 0.23 deleterious(0) possibly_damaging(0.741) TCGA-BP-4991-01 17 62474074 62474074 A T POLG2 Missense_Mutation p.L442M 0.20 tolerated(0.06) probably_damaging(1) TCGA-BP-4991-01 17 80046746 80046746 G A FASN Silent p.L771L 0.34 TCGA-BP-4991-01 19 10071471 10071471 G T COL5A3 Nonsense_Mutation p.Y1649* 0.28 TCGA-BP-4991-01 19 11618640 11618640 G A ECSIT Silent p.A274A 0.24 TCGA-BP-4991-01 19 36003602 36003602 C A DMKN Missense_Mutation p.V173F 0.06 deleterious(0.03) possibly_damaging(0.607) TCGA-BP-4991-01 1 147230622 147230622 C T GJA5 Missense_Mutation p.R242Q 0.30 tolerated(0.6) benign(0.004) TCGA-BP-4991-01 1 157767975 157767975 G T FCRL1 Missense_Mutation p.Q364K 0.29 tolerated(0.07) benign(0.055) TCGA-BP-4991-01 1 205129247 205129247 A - DSTYK Frame_Shift_Del p.Y700* 0.23 TCGA-BP-4991-01 1 224599175 224599175 G T WDR26 Missense_Mutation p.A371E 0.22 deleterious(0) probably_damaging(0.998) TCGA-BP-4991-01 1 33087387 33087387 T C ZBTB8OS 3'UTR 0.16 TCGA-BP-4991-01 1 33402518 33402518 G - RNF19B Frame_Shift_Del p.S697Rfs*15 0.29 TCGA-BP-4991-01 1 6592628 6592628 G T NOL9 Missense_Mutation p.A477D 0.27 tolerated(0.17) benign(0.006) TCGA-BP-4991-01 20 33999835 33999835 C T UQCC1 5'UTR 0.05 TCGA-BP-4991-01 22 25010806 25010806 G A GGT1 Silent p.G76G 0.30 TCGA-BP-4991-01 2 107049575 107049575 C T RGPD3 Missense_Mutation p.S791N 0.14 tolerated(0.12) benign(0.001) TCGA-BP-4991-01 2 121742131 121742131 G T GLI2 Missense_Mutation p.G590C 0.25 deleterious(0) probably_damaging(0.994) TCGA-BP-4991-01 2 85628905 85628905 T A CAPG Intron 0.27 TCGA-BP-4991-01 3 10188215 10188226 AGAGATGCAGGG - VHL In_Frame_Del p.R120_G123del 0.34 TCGA-BP-4991-01 3 148552315 148552315 C T CPB1 Nonsense_Mutation p.Q60* 0.06 TCGA-BP-4991-01 4 139100476 139100476 G T SLC7A11 Missense_Mutation p.P447T 0.24 tolerated(0.48) probably_damaging(0.988) TCGA-BP-4991-01 4 15511767 15511767 G A CC2D2A Silent p.G148G 0.26 TCGA-BP-4991-01 5 129070698 129070698 G T ADAMTS19 Missense_Mutation p.G1123V 0.29 deleterious(0) probably_damaging(1) TCGA-BP-4991-01 5 156074477 156074477 C T SGCD Missense_Mutation p.A169V 0.16 tolerated(0.07) benign(0.068) TCGA-BP-4991-01 6 31627292 31627292 A G C6orf47 Silent p.L145L 0.25 TCGA-BP-4991-01 7 123594289 123594289 C T SPAM1 Missense_Mutation p.P222L 0.24 deleterious(0) probably_damaging(1) TCGA-BP-4991-01 7 37136321 37136321 C G ELMO1 Missense_Mutation p.E401D 0.05 deleterious(0) probably_damaging(0.997) TCGA-BP-4991-01 7 98547298 98547298 G T TRRAP Missense_Mutation p.V1650L 0.26 benign(0.042) TCGA-BP-4991-01 7 99129934 99129935 - T ZKSCAN5 3'UTR 0.16 TCGA-BP-4991-01 8 87683239 87683244 TCTTTG - CNGB3 In_Frame_Del p.Q141_R142del 0.22 TCGA-BP-4991-01 8 99718731 99718731 T G STK3 Missense_Mutation p.E244D 0.04 tolerated(0.09) benign(0.245) TCGA-BP-4991-01 9 123476115 123476115 G A MEGF9 Silent p.T174T 0.27 TCGA-BP-4991-01 9 133491783 133491783 G A FUBP3 Missense_Mutation p.R149Q 0.07 tolerated(0.09) possibly_damaging(0.759) TCGA-BP-4991-01 X 108636245 108636245 C A GUCY2F Missense_Mutation p.D822Y 0.13 deleterious(0) probably_damaging(1) TCGA-BP-4991-01 X 53612105 53612105 C A HUWE1 Missense_Mutation p.R1623L 0.47 probably_damaging(0.909) TCGA-BP-4991-01 X 64959702 64959702 C T MSN Nonsense_Mutation p.Q561* 0.13 TCGA-BP-4992-01 10 134523924 134523924 G A INPP5A Missense_Mutation p.G204E 0.11 tolerated(0.27) probably_damaging(0.993) TCGA-BP-4992-01 10 28906668 28906668 C A WAC Missense_Mutation p.S610Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-BP-4992-01 11 12316358 12316358 T C MICALCL Silent p.P460P 0.12 TCGA-BP-4992-01 12 105538583 105538583 A C KIAA1033 Missense_Mutation p.N756T 0.25 tolerated(0.12) benign(0.029) TCGA-BP-4992-01 12 92539248 92539249 - G BTG1 Frame_Shift_Ins p.I22Hfs*32 0.21 TCGA-BP-4992-01 13 115007656 115007656 C A CDC16 Missense_Mutation p.L148M 0.13 tolerated(0.11) possibly_damaging(0.837) TCGA-BP-4992-01 15 77406695 77406695 G A PEAK1 Missense_Mutation p.P1682S 0.13 tolerated(0.8) benign(0.001) TCGA-BP-4992-01 15 83935682 83935682 C T BNC1 Missense_Mutation p.R114Q 0.15 deleterious(0) probably_damaging(0.954) TCGA-BP-4992-01 16 3100517 3100517 G A MMP25 Missense_Mutation p.D211N 0.28 deleterious(0.02) possibly_damaging(0.548) TCGA-BP-4992-01 16 46633827 46633827 C T SHCBP1 Missense_Mutation p.D421N 0.06 tolerated(0.06) probably_damaging(0.999) TCGA-BP-4992-01 16 46694354 46694354 T G VPS35 3'UTR 0.11 TCGA-BP-4992-01 16 50733767 50733767 C T NOD2 Missense_Mutation p.H148Y 0.27 tolerated(0.07) possibly_damaging(0.864) TCGA-BP-4992-01 17 2596082 2596082 G A CLUH Nonsense_Mutation p.Q1063* 0.31 TCGA-BP-4992-01 17 61555382 61555382 G A ACE Missense_Mutation p.D114N 0.23 tolerated(0.33) benign(0) TCGA-BP-4992-01 18 44013301 44013301 G A RNF165 Silent p.P70P 0.19 TCGA-BP-4992-01 18 72346181 72346181 A C ZNF407 Missense_Mutation p.K1069T 0.35 deleterious(0) probably_damaging(0.998) TCGA-BP-4992-01 19 11143976 11143976 C G SMARCA4 Missense_Mutation p.A1186G 0.33 probably_damaging(0.931) TCGA-BP-4992-01 19 18104303 18104303 C T KCNN1 Missense_Mutation p.R438W 0.12 deleterious(0) probably_damaging(0.998) TCGA-BP-4992-01 19 36258775 36258775 C A C19orf55 Missense_Mutation p.P343H 0.27 tolerated(0.11) probably_damaging(0.912) TCGA-BP-4992-01 19 50364761 50364761 C G PNKP Missense_Mutation p.E465Q 0.17 tolerated(0.08) benign(0.057) TCGA-BP-4992-01 19 50550275 50550275 C G ZNF473 Missense_Mutation p.R859G 0.12 deleterious(0.02) benign(0.25) TCGA-BP-4992-01 19 54182305 54182305 C T MIR515-1 RNA 0.13 TCGA-BP-4992-01 19 8606866 8606866 C T MYO1F Missense_Mutation p.D512N 0.14 tolerated(0.3) benign(0.004) TCGA-BP-4992-01 1 193029177 193029177 C T TROVE2 5'UTR 0.22 TCGA-BP-4992-01 1 24419478 24419478 G A MYOM3 Missense_Mutation p.P350L 0.19 tolerated(0.37) benign(0.005) TCGA-BP-4992-01 20 45239178 45239178 T C SLC13A3 Missense_Mutation p.M150V 0.14 deleterious(0) possibly_damaging(0.823) TCGA-BP-4992-01 22 45960802 45960802 G A FBLN1 Intron 0.18 TCGA-BP-4992-01 22 50728922 50728922 T C PLXNB2 Missense_Mutation p.E31G 0.07 tolerated(0.25) benign(0.034) TCGA-BP-4992-01 2 10051037 10051037 C T TAF1B Silent p.F376F 0.27 TCGA-BP-4992-01 2 10931989 10931989 C G PDIA6 Missense_Mutation p.K172N 0.28 deleterious(0.04) benign(0.047) TCGA-BP-4992-01 2 110053415 110053415 G T SH3RF3 Silent p.G547G 0.22 TCGA-BP-4992-01 2 201682967 201682967 C G BZW1 Missense_Mutation p.Q256E 0.16 deleterious(0.04) benign(0.071) TCGA-BP-4992-01 2 241631411 241631411 C A AQP12A Silent p.A27A 0.20 TCGA-BP-4992-01 2 96993809 96993809 C T ITPRIPL1 Silent p.F488F 0.28 TCGA-BP-4992-01 2 97867936 97867936 C T ANKRD36 Intron 0.08 TCGA-BP-4992-01 3 57913124 57913124 C A SLMAP 3'UTR 0.11 TCGA-BP-4992-01 3 69230103 69230103 G A FRMD4B Missense_Mutation p.A933V 0.05 tolerated(0.33) benign(0.1) TCGA-BP-4992-01 4 13604991 13604991 G C BOD1L1 Missense_Mutation p.A1178G 0.29 benign(0.025) TCGA-BP-4992-01 4 13604992 13604992 C T BOD1L1 Missense_Mutation p.A1178T 0.29 benign(0.043) TCGA-BP-4992-01 4 146770670 146770677 TTCCTCTT - ZNF827 Frame_Shift_Del p.K673Tfs*5 0.17 TCGA-BP-4992-01 5 140257019 140257019 C T PCDHA12 Silent p.H654H 0.25 TCGA-BP-4992-01 5 16475310 16475310 C A FAM134B Missense_Mutation p.R345I 0.22 deleterious(0.02) possibly_damaging(0.866) TCGA-BP-4992-01 5 179382657 179382657 A G RNF130 Silent p.F419F 0.23 TCGA-BP-4992-01 7 138417644 138417644 T C ATP6V0A4 Missense_Mutation p.N629S 0.10 tolerated(0.3) benign(0.113) TCGA-BP-4992-01 7 141540818 141540818 G A PRSS37 Missense_Mutation p.A11V 0.14 tolerated(0.36) benign(0.014) TCGA-BP-4992-01 7 151188050 151188050 A T RHEB Missense_Mutation p.Y35N 0.19 deleterious(0) probably_damaging(0.993) TCGA-BP-4992-01 7 42949681 42949681 C T C7orf25 Silent p.E331E 0.25 TCGA-BP-4992-01 9 107558674 107558674 A C ABCA1 Missense_Mutation p.I1718S 0.21 deleterious(0) possibly_damaging(0.87) TCGA-BP-4992-01 9 115973865 115973865 A C FKBP15 Missense_Mutation p.L21V 0.30 deleterious(0) probably_damaging(0.996) TCGA-BP-4992-01 9 21818193 21818193 C G MTAP Missense_Mutation p.F113L 0.18 deleterious(0.01) probably_damaging(0.961) TCGA-BP-4992-01 X 49598473 49598473 A C PAGE4 3'UTR 0.67 TCGA-BP-4993-01 10 12595350 12595350 G T CAMK1D Silent p.L73L 0.10 TCGA-BP-4993-01 11 89075257 89075257 A C NOX4 Missense_Mutation p.I441R 0.17 deleterious(0) possibly_damaging(0.857) TCGA-BP-4993-01 11 93797666 93797666 C A HEPHL1 Missense_Mutation p.N266K 0.15 deleterious(0) probably_damaging(1) TCGA-BP-4993-01 11 94229849 94229850 - G ANKRD49 5'UTR 0.22 TCGA-BP-4993-01 12 10586422 10586422 T - KLRC2 Frame_Shift_Del p.S151Vfs*5 0.21 TCGA-BP-4993-01 12 112673071 112673071 C A HECTD4 Splice_Site p.X1763_splice 0.35 TCGA-BP-4993-01 12 12815272 12815272 G A GPR19 Silent p.S37S 0.36 TCGA-BP-4993-01 12 56668847 56668847 T A CS Missense_Mutation p.Y286F 0.31 tolerated(0.3) possibly_damaging(0.663) TCGA-BP-4993-01 12 6923323 6923323 A T CD4 Missense_Mutation p.N77I 0.09 tolerated(0.06) benign(0.014) TCGA-BP-4993-01 14 106311904 106311904 C T IGHD Silent p.T36T 0.25 TCGA-BP-4993-01 14 24785098 24785098 G C LTB4R Missense_Mutation p.G81R 0.04 tolerated(0.52) benign(0.094) TCGA-BP-4993-01 14 74036025 74036025 C G ACOT2 Silent p.V27V 0.31 TCGA-BP-4993-01 14 77880341 77880341 C T NOXRED1 Silent p.L95L 0.39 TCGA-BP-4993-01 15 41813028 41813028 C T RPAP1 Missense_Mutation p.G1119E 0.38 tolerated(0.19) benign(0.025) TCGA-BP-4993-01 15 45412823 45412823 C A DUOXA1 Missense_Mutation p.R174L 0.19 deleterious(0.01) possibly_damaging(0.778) TCGA-BP-4993-01 15 45412824 45412824 G A DUOXA1 Missense_Mutation p.R174C 0.20 deleterious(0.02) benign(0.223) TCGA-BP-4993-01 16 2233883 2233883 G A CASKIN1 Silent p.N492N 0.12 TCGA-BP-4993-01 16 24942263 24942263 G T ARHGAP17 Missense_Mutation p.T786N 0.28 tolerated_low_confidence(0.06) benign(0.001) TCGA-BP-4993-01 16 53308192 53308192 G A CHD9 Missense_Mutation p.V1649I 0.08 possibly_damaging(0.73) TCGA-BP-4993-01 16 67005096 67005096 C G CES3 Missense_Mutation p.P389A 0.06 tolerated(0.12) benign(0.026) TCGA-BP-4993-01 16 67877045 67877045 T C THAP11 Silent p.F196F 0.10 TCGA-BP-4993-01 17 33585670 33585670 G A SLFN5 Intron 0.28 TCGA-BP-4993-01 17 48148238 48148238 G T ITGA3 Missense_Mutation p.W232L 0.19 deleterious(0.03) possibly_damaging(0.881) TCGA-BP-4993-01 17 60802312 60802312 C A MARCH10 Silent p.V697V 0.27 TCGA-BP-4993-01 17 62496043 62496043 A G DDX5 Nonstop_Mutation p.*615Qext*24 0.10 TCGA-BP-4993-01 17 7147938 7147938 G T CTDNEP1 Silent p.I202I 0.10 TCGA-BP-4993-01 17 74383680 74383680 G A SPHK1 3'UTR 0.10 TCGA-BP-4993-01 17 7508978 7508978 T C FXR2 Silent p.E71E 0.26 TCGA-BP-4993-01 18 21059323 21059323 G A RIOK3 Missense_Mutation p.E463K 0.08 tolerated(0.06) benign(0.069) TCGA-BP-4993-01 18 56587466 56587466 T C ZNF532 Silent p.C649C 0.10 TCGA-BP-4993-01 19 36435683 36435683 C A LRFN3 Nonsense_Mutation p.S550* 0.12 TCGA-BP-4993-01 19 44833609 44833609 A G ZNF112 Missense_Mutation p.I240T 0.24 tolerated(0.61) benign(0) TCGA-BP-4993-01 19 55048123 55048123 G A KIR3DX1 Silent p.V230V 0.06 TCGA-BP-4993-01 19 55450880 55450880 T C NLRP7 Missense_Mutation p.E436G 0.08 tolerated(0.3) benign(0.016) TCGA-BP-4993-01 19 9076252 9076252 A T MUC16 Missense_Mutation p.S3732T 0.25 unknown(0) TCGA-BP-4993-01 1 100964716 100964716 A T CDC14A Silent p.P551P 0.09 TCGA-BP-4993-01 1 11918438 11918438 G A NPPB Missense_Mutation p.T74I 0.26 tolerated(0.05) possibly_damaging(0.615) TCGA-BP-4993-01 1 150310685 150310685 C G PRPF3 Missense_Mutation p.T362R 0.20 deleterious(0) probably_damaging(0.971) TCGA-BP-4993-01 1 159277759 159277759 T G FCER1A 3'UTR 0.36 TCGA-BP-4993-01 1 1749311 1749311 C A GNB1 Missense_Mutation p.A21S 0.24 tolerated(0.5) benign(0.027) TCGA-BP-4993-01 1 23418890 23418890 G A LUZP1 Missense_Mutation p.S622L 0.18 tolerated_low_confidence(0.56) benign(0) TCGA-BP-4993-01 1 29189406 29189406 C T OPRD1 Missense_Mutation p.R244C 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-BP-4993-01 1 36290935 36290935 C - AGO4 Frame_Shift_Del p.P110Qfs*19 0.15 TCGA-BP-4993-01 1 47333687 47333687 G T CYP4Z2P RNA 0.18 TCGA-BP-4993-01 1 72748110 72748110 C T NEGR1 Missense_Mutation p.S23N 0.15 tolerated(0.06) benign(0.24) TCGA-BP-4993-01 1 85546974 85546974 G A WDR63 Missense_Mutation p.C54Y 0.21 deleterious(0) probably_damaging(0.954) TCGA-BP-4993-01 20 29891069 29891069 G A DEFB116 Silent p.Y85Y 0.24 TCGA-BP-4993-01 20 3899360 3899360 A C PANK2 Missense_Mutation p.N527H 0.10 tolerated(0.4) possibly_damaging(0.679) TCGA-BP-4993-01 20 4164251 4164251 G A SMOX Missense_Mutation p.V494M 0.18 tolerated(0.06) possibly_damaging(0.73) TCGA-BP-4993-01 20 9520140 9520140 A T PAK7 Missense_Mutation p.V710D 0.32 deleterious(0) possibly_damaging(0.734) TCGA-BP-4993-01 21 47692476 47692476 T A MCM3AP Nonsense_Mutation p.R822* 0.36 TCGA-BP-4993-01 22 28192794 28192794 C T MN1 Silent p.A1246A 0.36 TCGA-BP-4993-01 22 39925423 39925423 G T RPS19BP1 3'UTR 0.17 TCGA-BP-4993-01 2 101656644 101656644 C A TBC1D8 Missense_Mutation p.R344I 0.04 deleterious(0.01) possibly_damaging(0.459) TCGA-BP-4993-01 2 109365421 109365421 A C RANBP2 Missense_Mutation p.K370T 0.30 tolerated(0.09) benign(0.004) TCGA-BP-4993-01 2 241808356 241808356 T C AGXT Missense_Mutation p.L25P 0.26 deleterious(0) probably_damaging(1) TCGA-BP-4993-01 2 74328262 74328263 - A TET3 Frame_Shift_Ins p.N1315Kfs*21 0.28 TCGA-BP-4993-01 2 89339977 89339977 G A IGKV1-12 Missense_Mutation p.S32F 0.05 tolerated(0.11) benign(0.127) TCGA-BP-4993-01 3 10191573 10191573 A - VHL Frame_Shift_Del p.D190Tfs*12 0.41 TCGA-BP-4993-01 3 123005537 123005537 T C ADCY5 Missense_Mutation p.I1218V 0.19 deleterious(0.03) possibly_damaging(0.838) TCGA-BP-4993-01 3 164906543 164906543 C T SLITRK3 Silent p.R692R 0.05 TCGA-BP-4993-01 3 43474215 43474215 G A ANO10 Missense_Mutation p.A601V 0.08 tolerated(1) benign(0.001) TCGA-BP-4993-01 3 52643348 52643348 G A PBRM1 Nonsense_Mutation p.R850* 0.10 TCGA-BP-4993-01 4 134071517 134071517 C A PCDH10 Nonsense_Mutation p.Y74* 0.25 TCGA-BP-4993-01 4 140641167 140641167 A - MAML3 Frame_Shift_Del p.G910Efs*3 0.41 TCGA-BP-4993-01 4 170618812 170618815 ATTC - CLCN3 Frame_Shift_Del p.Y497* 0.24 TCGA-BP-4993-01 5 70930789 70930789 C G MCCC2 Missense_Mutation p.H275D 0.27 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BP-4993-01 6 110036326 110036326 G T FIG4 Missense_Mutation p.V38F 0.07 deleterious(0) probably_damaging(0.98) TCGA-BP-4993-01 6 154412549 154412549 G A OPRM1 Missense_Mutation p.R462H 0.15 deleterious(0) benign(0.399) TCGA-BP-4993-01 6 86324828 86324828 A G SYNCRIP Silent p.A506A 0.32 TCGA-BP-4993-01 7 92731889 92731889 C T SAMD9 Silent p.E1174E 0.08 TCGA-BP-4993-01 8 143832568 143832568 C G LYPD2 Missense_Mutation p.V27L 0.19 deleterious(0) benign(0.101) TCGA-BP-4993-01 8 144654816 144654816 T C MROH6 Silent p.A23A 0.33 TCGA-BP-4993-01 8 87588236 87588236 T A CNGB3 Missense_Mutation p.K742N 0.08 tolerated(0.06) possibly_damaging(0.649) TCGA-BP-4993-01 9 106877025 106877025 T C SMC2 Missense_Mutation p.L529P 0.10 deleterious(0) probably_damaging(1) TCGA-BP-4993-01 9 108377609 108377609 A - FKTN Frame_Shift_Del p.K278Rfs*6 0.21 TCGA-BP-4993-01 9 130705357 130705357 G - FAM102A 3'UTR 0.37 TCGA-BP-4993-01 9 14737487 14737487 C A FREM1 Missense_Mutation p.K2149N 0.05 deleterious(0.04) benign(0.073) TCGA-BP-4993-01 9 88207597 88207597 C T AGTPBP1 Missense_Mutation p.V776I 0.20 tolerated(0.59) benign(0.001) TCGA-BP-4993-01 9 93624627 93624627 G A SYK Splice_Site p.X239_splice 0.12 TCGA-BP-4993-01 X 135314179 135314179 C T MAP7D3 Missense_Mutation p.V313I 0.16 tolerated(0.38) benign(0.007) TCGA-BP-4993-01 X 140993825 140993825 G C MAGEC1 Missense_Mutation p.S212T 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-BP-4994-01 10 105780244 105780244 A G SLK Splice_Site p.X1108_splice 0.18 TCGA-BP-4994-01 11 1491713 1491713 C A MOB2 Nonsense_Mutation p.E166* 0.06 TCGA-BP-4994-01 11 1858203 1858203 C A SYT8 Silent p.V283V 0.16 TCGA-BP-4994-01 12 18858244 18858244 A T PLCZ1 Silent p.S240S 0.06 TCGA-BP-4994-01 12 43771210 43771210 G T ADAMTS20 Missense_Mutation p.S1651R 0.06 tolerated(0.36) benign(0.019) TCGA-BP-4994-01 12 51488868 51488868 G T TFCP2 3'UTR 0.22 TCGA-BP-4994-01 12 57995053 57995053 C T PIP4K2C Silent p.F369F 0.06 TCGA-BP-4994-01 12 58000236 58000236 C T DTX3 5'UTR 0.13 TCGA-BP-4994-01 14 51237587 51237587 C A NIN Silent p.R414R 0.16 TCGA-BP-4994-01 16 25268247 25268247 C A ZKSCAN2 Nonsense_Mutation p.E68* 0.06 TCGA-BP-4994-01 16 2627461 2627461 G A PDPK1 Missense_Mutation p.V249I 0.08 deleterious(0.05) possibly_damaging(0.63) TCGA-BP-4994-01 17 80772758 80772758 G A TBCD Silent p.A422A 0.28 TCGA-BP-4994-01 18 51820612 51820612 A G POLI Silent p.Q666Q 0.34 TCGA-BP-4994-01 18 72999255 72999255 G A TSHZ1 Silent p.P586P 0.05 TCGA-BP-4994-01 19 18084972 18084972 G A KCNN1 Missense_Mutation p.R92H 0.10 deleterious(0) probably_damaging(0.988) TCGA-BP-4994-01 19 52786650 52786650 C G ZNF766 Missense_Mutation p.I86M 0.33 tolerated(0.1) benign(0.025) TCGA-BP-4994-01 19 54783387 54783387 C A LILRB2 Missense_Mutation p.K157N 0.14 deleterious(0.02) possibly_damaging(0.519) TCGA-BP-4994-01 19 55816167 55816167 G T BRSK1 Silent p.P532P 0.22 TCGA-BP-4994-01 1 116939279 116939281 CAT - ATP1A1 In_Frame_Del p.I634del 0.22 TCGA-BP-4994-01 1 151735551 151735551 C T MRPL9 Silent p.R75R 0.25 TCGA-BP-4994-01 1 161695855 161695855 T C FCRLB Silent p.A184A 0.09 TCGA-BP-4994-01 20 40080534 40080535 TT - CHD6 Frame_Shift_Del p.K1152Efs*63 0.18 TCGA-BP-4994-01 2 38297920 38297920 A G CYP1B1 Missense_Mutation p.M526T 0.05 tolerated(0.1) benign(0.106) TCGA-BP-4994-01 3 49924839 49924839 C G MST1R Silent p.S1368S 0.05 TCGA-BP-4994-01 4 71634338 71634338 A T RUFY3 Missense_Mutation p.D219V 0.06 deleterious(0) probably_damaging(0.914) TCGA-BP-4994-01 5 140236489 140236489 C G PCDHA10 Missense_Mutation p.P286A 0.10 tolerated_low_confidence(0.15) benign(0.013) TCGA-BP-4994-01 5 140362135 140362135 C A PCDHAC1 Silent p.S856S 0.11 TCGA-BP-4994-01 6 83845475 83845475 A - DOPEY1 Frame_Shift_Del p.H1003Lfs*42 0.22 TCGA-BP-4994-01 7 151478385 151478385 G A PRKAG2 Missense_Mutation p.P107S 0.15 tolerated_low_confidence(0.07) possibly_damaging(0.859) TCGA-BP-4994-01 7 2977611 2977611 C G CARD11 Missense_Mutation p.C358S 0.04 deleterious(0) probably_damaging(0.999) TCGA-BP-4994-01 7 44054312 44054312 T C SPDYE1 3'Flank 0.11 TCGA-BP-4994-01 8 119209838 119209838 T C SAMD12 3'UTR 0.24 TCGA-BP-4994-01 9 140809200 140809200 C A CACNA1B Silent p.I239I 0.21 TCGA-BP-4995-01 10 31134199 31134199 C T ZNF438 Silent p.L726L 0.41 TCGA-BP-4995-01 10 61815520 61815520 A T ANK3 Missense_Mutation p.C4321S 0.29 benign(0.001) TCGA-BP-4995-01 10 79553777 79553777 C G DLG5 Missense_Mutation p.R1882T 0.29 deleterious(0.02) benign(0.213) TCGA-BP-4995-01 11 198281 198281 C T ODF3 Silent p.F131F 0.09 TCGA-BP-4995-01 11 22646844 22646844 C T FANCF Silent p.L171L 0.23 TCGA-BP-4995-01 11 46407571 46407571 C A CHRM4 Silent p.T179T 0.12 TCGA-BP-4995-01 11 62366080 62366080 C G MTA2 Silent p.G74G 0.26 TCGA-BP-4995-01 11 92087535 92087535 G A FAT3 Missense_Mutation p.A753T 0.34 benign(0.297) TCGA-BP-4995-01 12 111785861 111785861 C A CUX2 Missense_Mutation p.P1398H 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-BP-4995-01 12 95694240 95694240 C T VEZT Missense_Mutation p.P711S 0.26 tolerated(0.62) benign(0.001) TCGA-BP-4995-01 13 42440166 42440166 C T VWA8 Missense_Mutation p.A407T 0.29 tolerated(0.18) benign(0.066) TCGA-BP-4995-01 14 105418040 105418040 G A AHNAK2 Nonsense_Mutation p.Q1250* 0.29 TCGA-BP-4995-01 14 70634851 70634851 G A SLC8A3 Missense_Mutation p.R97C 0.33 deleterious(0) probably_damaging(0.996) TCGA-BP-4995-01 15 42363002 42363002 G A PLA2G4D Silent p.I652I 0.18 TCGA-BP-4995-01 15 43821933 43821933 T A MAP1A Silent p.A2707A 0.30 TCGA-BP-4995-01 16 16108476 16108476 C T ABCC1 Silent p.A160A 0.21 TCGA-BP-4995-01 16 4519369 4519369 C T NMRAL1 Silent p.E46E 0.43 TCGA-BP-4995-01 16 87969932 87969932 T A CA5A Missense_Mutation p.Q42L 0.04 tolerated(0.06) benign(0.065) TCGA-BP-4995-01 16 88893182 88893182 G A GALNS Missense_Mutation p.T356M 0.20 tolerated(0.07) possibly_damaging(0.451) TCGA-BP-4995-01 17 79866485 79866485 G A PCYT2 Silent p.G122G 0.06 TCGA-BP-4995-01 18 22804557 22804557 C T ZNF521 Missense_Mutation p.V1109I 0.27 tolerated(0.52) benign(0.002) TCGA-BP-4995-01 18 54814886 54814886 G - BOD1L2 Frame_Shift_Del p.G115Efs*14 0.17 TCGA-BP-4995-01 18 59221899 59221899 G A CDH20 Missense_Mutation p.A793T 0.58 tolerated(0.57) benign(0.005) TCGA-BP-4995-01 19 50185319 50185319 C T PRMT1 Silent p.I115I 0.49 TCGA-BP-4995-01 1 154522941 154522941 C T UBE2Q1 Nonsense_Mutation p.W414* 0.26 TCGA-BP-4995-01 1 160769615 160769615 C G LY9 Missense_Mutation p.P66R 0.36 deleterious(0) probably_damaging(0.959) TCGA-BP-4995-01 1 19446776 19446776 G A UBR4 Missense_Mutation p.A3403V 0.04 possibly_damaging(0.901) TCGA-BP-4995-01 1 201009799 201009799 A T CACNA1S Missense_Mutation p.L1726Q 0.28 tolerated_low_confidence(0.11) benign(0.001) TCGA-BP-4995-01 1 227227835 227227835 C A CDC42BPA Nonsense_Mutation p.E1031* 0.20 TCGA-BP-4995-01 1 236924371 236924371 C A ACTN2 Silent p.T808T 0.28 TCGA-BP-4995-01 1 53741419 53741419 C T LRP8 Missense_Mutation p.G297D 0.36 tolerated(0.62) probably_damaging(0.974) TCGA-BP-4995-01 1 78958841 78958841 C G PTGFR Missense_Mutation p.T138R 0.23 deleterious(0) possibly_damaging(0.858) TCGA-BP-4995-01 21 19737495 19737495 T C TMPRSS15 Silent p.K245K 0.04 TCGA-BP-4995-01 2 128927889 128927889 G T UGGT1 Silent p.G983G 0.29 TCGA-BP-4995-01 2 179454614 179454614 T A TTN Missense_Mutation p.Q20613L 0.33 TCGA-BP-4995-01 2 209169642 209169642 C A PIKFYVE Missense_Mutation p.S514Y 0.33 tolerated(0.16) probably_damaging(0.972) TCGA-BP-4995-01 2 7023597 7023597 C T RSAD2 Missense_Mutation p.R148W 0.22 deleterious(0.01) possibly_damaging(0.67) TCGA-BP-4995-01 3 10183734 10183734 C A VHL Nonsense_Mutation p.S68* 0.50 TCGA-BP-4995-01 3 11076220 11076220 G A SLC6A1 Missense_Mutation p.V511M 0.07 tolerated(0.06) possibly_damaging(0.805) TCGA-BP-4995-01 3 130289957 130289957 C T COL6A6 Silent p.F899F 0.22 TCGA-BP-4995-01 3 172365895 172365895 T A NCEH1 Missense_Mutation p.I82F 0.29 tolerated(0.51) benign(0.413) TCGA-BP-4995-01 3 25832713 25832713 G C OXSM Missense_Mutation p.G68R 0.40 tolerated(0.54) benign(0.002) TCGA-BP-4995-01 3 52620685 52620685 G C PBRM1 Missense_Mutation p.P1023R 0.38 deleterious(0) possibly_damaging(0.904) TCGA-BP-4995-01 4 114277953 114277953 C T ANK2 Nonsense_Mutation p.Q2727* 0.28 TCGA-BP-4995-01 4 155253991 155253991 C T DCHS2 Silent p.S624S 0.33 TCGA-BP-4995-01 4 48147523 48147523 C A TEC Missense_Mutation p.R385S 0.36 tolerated(0.07) probably_damaging(0.989) TCGA-BP-4995-01 5 140553991 140553991 G A PCDHB7 Silent p.Q525Q 0.29 TCGA-BP-4995-01 5 176860405 176860405 T A GRK6 Missense_Mutation p.F197L 0.23 deleterious(0) probably_damaging(0.997) TCGA-BP-4995-01 6 7231266 7231266 T A RREB1 Silent p.S978S 0.41 TCGA-BP-4995-01 7 123593857 123593857 G A SPAM1 Missense_Mutation p.S78N 0.30 tolerated(0.07) possibly_damaging(0.597) TCGA-BP-4995-01 7 99313483 99313483 C A CYP3A7 Nonsense_Mutation p.G190* 0.26 TCGA-BP-4995-01 8 17412117 17412117 G A SLC7A2 Silent p.A408A 0.29 TCGA-BP-4995-01 8 23118090 23118090 A C CHMP7 Missense_Mutation p.E447A 0.34 deleterious(0.01) probably_damaging(0.956) TCGA-BP-4995-01 8 442623 442623 G A TDRP Missense_Mutation p.P112S 0.30 deleterious(0) probably_damaging(0.988) TCGA-BP-4995-01 9 113212507 113212507 T C SVEP1 Missense_Mutation p.Q1312R 0.46 benign(0.001) TCGA-BP-4995-01 X 135405173 135405173 A G GPR112 Missense_Mutation p.R103G 0.07 deleterious(0.02) benign(0) TCGA-BP-4998-01 11 430378 430378 G T ANO9 Missense_Mutation p.L189M 0.09 deleterious(0) probably_damaging(0.995) TCGA-BP-4998-01 11 59361486 59361486 T G OSBP Missense_Mutation p.E518D 0.24 deleterious(0) probably_damaging(0.983) TCGA-BP-4998-01 11 68704210 68704210 C A IGHMBP2 Missense_Mutation p.D754E 0.06 tolerated(0.5) benign(0.173) TCGA-BP-4998-01 12 120636946 120636946 A C RPLP0 Missense_Mutation p.I98S 0.16 deleterious(0.02) probably_damaging(0.971) TCGA-BP-4998-01 12 25264775 25264775 A T CASC1 Silent p.A570A 0.21 TCGA-BP-4998-01 13 25466970 25466970 A T CENPJ Missense_Mutation p.D1009E 0.16 tolerated(0.19) benign(0.046) TCGA-BP-4998-01 14 61789073 61789073 C T PRKCH Missense_Mutation p.A85V 0.07 tolerated(0.58) possibly_damaging(0.653) TCGA-BP-4998-01 14 69349260 69349260 G A ACTN1 Missense_Mutation p.A623V 0.05 tolerated(0.17) benign(0) TCGA-BP-4998-01 15 34544539 34544539 C T SLC12A6 Missense_Mutation p.V389I 0.17 tolerated(0.42) benign(0.002) TCGA-BP-4998-01 15 49170496 49170496 C A EID1 Silent p.S41S 0.09 TCGA-BP-4998-01 16 2817282 2817282 A T SRRM2 Silent p.P2251P 0.23 TCGA-BP-4998-01 17 41197795 41197795 G A BRCA1 Missense_Mutation p.P1852L 0.14 deleterious(0.01) possibly_damaging(0.481) TCGA-BP-4998-01 19 18466813 18466813 A G PGPEP1 Missense_Mutation p.S66G 0.22 tolerated(0.05) benign(0.008) TCGA-BP-4998-01 19 6681963 6681963 A G C3 Missense_Mutation p.Y1447H 0.24 deleterious(0) probably_damaging(0.994) TCGA-BP-4998-01 1 15771156 15771156 C T CTRC Silent p.H183H 0.17 TCGA-BP-4998-01 1 171510783 171510787 CAAGA - PRRC2C Frame_Shift_Del p.P1391Qfs*3 0.25 TCGA-BP-4998-01 1 234743247 234743247 C A IRF2BP2 Missense_Mutation p.R467I 0.23 deleterious(0) probably_damaging(0.944) TCGA-BP-4998-01 20 30064360 30064360 T G REM1 Missense_Mutation p.S38A 0.21 tolerated(0.86) benign(0) TCGA-BP-4998-01 21 47542435 47542435 G A COL6A2 Missense_Mutation p.R533H 0.14 tolerated(0.13) benign(0.358) TCGA-BP-4998-01 2 110919218 110919218 C T NPHP1 Missense_Mutation p.A362T 0.21 deleterious(0) probably_damaging(0.999) TCGA-BP-4998-01 2 162730485 162730485 A C SLC4A10 Missense_Mutation p.E306D 0.17 tolerated(0.72) benign(0.002) TCGA-BP-4998-01 2 179598118 179598118 A T TTN Nonsense_Mutation p.L5301* 0.09 TCGA-BP-4998-01 2 219746998 219746998 C T WNT10A Missense_Mutation p.R77C 0.15 deleterious(0) probably_damaging(0.998) TCGA-BP-4998-01 2 27598749 27598749 C T SNX17 Missense_Mutation p.R339W 0.20 deleterious(0.01) benign(0.145) TCGA-BP-4998-01 2 37586819 37586819 A G QPCT Missense_Mutation p.N122D 0.05 deleterious(0) probably_damaging(0.949) TCGA-BP-4998-01 3 10188315 10188315 T C VHL Missense_Mutation p.L153P 0.24 deleterious(0) probably_damaging(0.998) TCGA-BP-4998-01 3 186459690 186459690 G A KNG1 Missense_Mutation p.G502D 0.16 tolerated(0.1) benign(0.142) TCGA-BP-4998-01 3 47043759 47043759 G A NBEAL2 Missense_Mutation p.R1711H 0.13 deleterious(0.01) probably_damaging(0.919) TCGA-BP-4998-01 3 52236547 52236547 T C ALAS1 Missense_Mutation p.V75A 0.21 tolerated(0.63) benign(0.001) TCGA-BP-4998-01 4 47427845 47427845 A G GABRB1 Missense_Mutation p.E412G 0.04 tolerated(0.35) benign(0.005) TCGA-BP-4998-01 6 100061916 100061916 C A PRDM13 Missense_Mutation p.L469M 0.06 deleterious(0) possibly_damaging(0.776) TCGA-BP-4998-01 6 150174138 150174138 C A LRP11 Splice_Site p.X257_splice 0.16 TCGA-BP-4998-01 6 24714642 24714642 C T C6orf62 Missense_Mutation p.M111I 0.10 tolerated(0.23) benign(0.001) TCGA-BP-4998-01 6 4125471 4125471 G T C6orf201 Intron 0.26 TCGA-BP-4998-01 6 46657418 46657418 G T TDRD6 Missense_Mutation p.R518M 0.26 deleterious(0) probably_damaging(0.95) TCGA-BP-4998-01 6 64416765 64416765 A G PHF3 Missense_Mutation p.E1237G 0.20 deleterious(0) probably_damaging(1) TCGA-BP-4998-01 6 7230362 7230362 A T RREB1 Missense_Mutation p.D677V 0.25 deleterious(0) probably_damaging(0.991) TCGA-BP-4998-01 7 113559039 113559039 C A PPP1R3A Nonsense_Mutation p.E5* 0.15 TCGA-BP-4998-01 7 139724549 139724549 G C PARP12 Silent p.A639A 0.32 TCGA-BP-4998-01 7 95614210 95614210 C T DYNC1I1 Missense_Mutation p.R239W 0.04 deleterious(0) probably_damaging(0.998) TCGA-BP-4998-01 8 63492147 63492147 C G NKAIN3 Missense_Mutation p.A35G 0.20 deleterious(0.02) probably_damaging(1) TCGA-BP-4998-01 9 127118949 127118949 A C PSMB7 Intron 0.13 TCGA-BP-4998-01 9 133760875 133760875 C T ABL1 Silent p.F1085F 0.25 TCGA-BP-4998-01 X 54048718 54048718 T C PHF8 Silent p.R125R 0.45 TCGA-BP-4999-01 10 15210661 15210661 C A NMT2 5'UTR 0.24 TCGA-BP-4999-01 10 94454334 94454334 C G HHEX Missense_Mutation p.L208V 0.25 tolerated(0.31) benign(0.026) TCGA-BP-4999-01 11 10825853 10825853 G C EIF4G2 Missense_Mutation p.P155R 0.19 tolerated(0.15) benign(0.212) TCGA-BP-4999-01 11 119290972 119290972 C G THY1 Silent p.L54L 0.20 TCGA-BP-4999-01 11 66322058 66322058 C T CTD-3074O7.2 3'Flank 0.21 TCGA-BP-4999-01 11 71948448 71948448 C G INPPL1 Missense_Mutation p.P1054A 0.24 tolerated(0.71) possibly_damaging(0.539) TCGA-BP-4999-01 12 72164429 72164431 AAT - RAB21 In_Frame_Del p.N93del 0.15 TCGA-BP-4999-01 13 33222938 33222938 A C PDS5B Missense_Mutation p.D10A 0.17 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-BP-4999-01 13 33316758 33316758 G A PDS5B Nonsense_Mutation p.W835* 0.25 TCGA-BP-4999-01 14 102276171 102276171 C T PPP2R5C Intron 0.25 TCGA-BP-4999-01 14 106667827 106667827 C A IGHV3-20 Silent p.G35G 0.15 TCGA-BP-4999-01 14 22038804 22038804 C A OR10G3 Missense_Mutation p.R24S 0.22 tolerated(0.06) benign(0.184) TCGA-BP-4999-01 14 68151872 68151872 T A RDH11 Missense_Mutation p.E238D 0.17 tolerated(0.27) benign(0.006) TCGA-BP-4999-01 15 41105065 41105065 G T ZFYVE19 Missense_Mutation p.R332L 0.25 deleterious(0) probably_damaging(0.98) TCGA-BP-4999-01 15 56390306 56390306 A G RFX7 Silent p.V360V 0.30 TCGA-BP-4999-01 16 11873154 11873154 A G ZC3H7A Silent p.D58D 0.22 TCGA-BP-4999-01 16 30977377 30977377 C G SETD1A Silent p.A725A 0.17 TCGA-BP-4999-01 16 70012183 70012183 T G RP11-419C5.2 Intron 0.22 TCGA-BP-4999-01 17 33269618 33269618 T A CCT6B Missense_Mutation p.E257V 0.17 deleterious(0.01) possibly_damaging(0.75) TCGA-BP-4999-01 17 38859430 38859430 G C KRT24 Missense_Mutation p.I172M 0.22 deleterious(0) probably_damaging(1) TCGA-BP-4999-01 17 64216834 64216834 G T APOH Missense_Mutation p.P148T 0.28 deleterious(0.01) probably_damaging(1) TCGA-BP-4999-01 19 18724826 18724826 G C TMEM59L Missense_Mutation p.A106P 0.15 deleterious(0.04) probably_damaging(1) TCGA-BP-4999-01 19 38190552 38190552 A T ZNF607 Missense_Mutation p.H160Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-BP-4999-01 19 9070296 9070296 T G MUC16 Missense_Mutation p.N5717T 0.14 unknown(0) TCGA-BP-4999-01 1 144931029 144931029 G A PDE4DIP Intron 0.10 TCGA-BP-4999-01 1 154192889 154192889 C - C1orf43 5'UTR 0.20 TCGA-BP-4999-01 1 160523749 160523749 C T CD84 Silent p.T192T 0.24 TCGA-BP-4999-01 1 17747210 17747210 C G RCC2 Missense_Mutation p.G287R 0.16 deleterious(0) probably_damaging(1) TCGA-BP-4999-01 1 186324584 186324584 T C TPR Missense_Mutation p.Q710R 0.20 benign(0.069) TCGA-BP-4999-01 1 222721137 222721137 C G HHIPL2 Missense_Mutation p.D84H 0.18 tolerated(0.08) probably_damaging(0.933) TCGA-BP-4999-01 1 36552420 36552420 A G TEKT2 Missense_Mutation p.K202E 0.27 deleterious(0) probably_damaging(0.985) TCGA-BP-4999-01 1 78167136 78167136 T - USP33 Frame_Shift_Del p.E841Rfs*22 0.19 TCGA-BP-4999-01 1 85117618 85117618 G T SSX2IP Silent p.T484T 0.23 TCGA-BP-4999-01 20 25249816 25249816 G T PYGB Missense_Mutation p.G133W 0.25 deleterious(0) probably_damaging(1) TCGA-BP-4999-01 22 36693020 36693020 C T MYH9 Silent p.E1047E 0.32 TCGA-BP-4999-01 2 219140333 219140333 G A TMBIM1 Silent p.Y267Y 0.12 TCGA-BP-4999-01 2 220073738 220073738 G A ZFAND2B Silent p.L232L 0.29 TCGA-BP-4999-01 2 25467027 25467027 T - DNMT3A Frame_Shift_Del p.E616Dfs*35 0.14 TCGA-BP-4999-01 2 73717074 73717074 A G ALMS1 Missense_Mutation p.K2662R 0.19 benign(0.047) TCGA-BP-4999-01 3 10183763 10183763 A G VHL Missense_Mutation p.N78D 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-BP-4999-01 4 40829224 40829224 G A APBB2 Missense_Mutation p.R553W 0.21 deleterious(0) possibly_damaging(0.891) TCGA-BP-4999-01 4 47939840 47939840 A C CNGA1 Missense_Mutation p.L293R 0.17 deleterious(0.01) probably_damaging(0.915) TCGA-BP-4999-01 5 1330417 1330417 G A CLPTM1L Missense_Mutation p.A353V 0.09 tolerated(0.14) benign(0.053) TCGA-BP-4999-01 5 141019628 141019628 G A RELL2 Silent p.G215G 0.14 TCGA-BP-4999-01 5 6600260 6600260 G C NSUN2 Missense_Mutation p.R695G 0.13 tolerated(0.12) probably_damaging(0.997) TCGA-BP-4999-01 6 33036464 33036464 C T HLA-DPA1 Missense_Mutation p.R249H 0.18 tolerated(0.21) benign(0.002) TCGA-BP-4999-01 6 33663430 33663430 C A SBP1 Missense_Mutation p.W15C 0.24 unknown(0) TCGA-BP-4999-01 6 36339277 36339277 G A ETV7 Missense_Mutation p.P165L 0.24 tolerated(0.5) benign(0) TCGA-BP-4999-01 6 76591436 76591436 G A MYO6 Missense_Mutation p.D773N 0.17 deleterious(0) unknown(0) TCGA-BP-4999-01 7 1474748 1474748 A G MICALL2 Missense_Mutation p.I876T 0.15 deleterious(0.04) benign(0.023) TCGA-BP-4999-01 7 158557475 158557475 C - ESYT2 Frame_Shift_Del p.V380Sfs*38 0.17 TCGA-BP-4999-01 7 23307604 23307604 G A GPNMB Missense_Mutation p.G418E 0.19 deleterious(0.02) probably_damaging(1) TCGA-BP-4999-01 8 55539690 55539695 TACCAG - RP1 In_Frame_Del p.L1083_V1085delinsF 0.22 TCGA-BP-4999-01 9 109694675 109694675 G A ZNF462 Intron 0.16 TCGA-BP-4999-01 9 133543580 133543580 C A PRDM12 Silent p.I150I 0.14 TCGA-BP-4999-01 9 139272004 139272004 G A SNAPC4 Silent p.C1425C 0.07 TCGA-BP-4999-01 9 40772750 40772750 C T ZNF658 Missense_Mutation p.C842Y 0.28 tolerated(0.14) benign(0.043) TCGA-BP-4999-01 X 151092616 151092616 G T MAGEA4 Missense_Mutation p.K160N 0.39 tolerated(0.07) possibly_damaging(0.502) TCGA-BP-5000-01 10 12009405 12009405 G T UPF2 Missense_Mutation p.R668S 0.15 deleterious(0) probably_damaging(0.993) TCGA-BP-5000-01 10 38240973 38240973 C T ZNF25 3'UTR 0.06 TCGA-BP-5000-01 10 70333253 70333253 T A TET1 Silent p.G386G 0.03 TCGA-BP-5000-01 10 75551975 75551975 C A ZSWIM8 Missense_Mutation p.Q560K 0.08 tolerated_low_confidence(0.56) benign(0.089) TCGA-BP-5000-01 11 62288165 62288165 T G AHNAK Missense_Mutation p.K4575T 0.20 probably_damaging(0.966) TCGA-BP-5000-01 11 64360346 64360346 C A SLC22A12 Silent p.A166A 0.19 TCGA-BP-5000-01 11 73825591 73825591 T C C2CD3 Missense_Mutation p.Q523R 0.18 tolerated(0.54) benign(0.02) TCGA-BP-5000-01 12 124069276 124069276 G A TMED2 Silent p.E31E 0.27 TCGA-BP-5000-01 12 52379004 52379005 AA - ACVR1B Frame_Shift_Del p.K378Vfs*24 0.24 TCGA-BP-5000-01 12 72091215 72091227 CTGGCCTGCTCTG - TMEM19 Frame_Shift_Del p.A181Efs*12 0.30 TCGA-BP-5000-01 13 100511253 100511253 C A CLYBL Missense_Mutation p.P130T 0.24 deleterious(0) probably_damaging(1) TCGA-BP-5000-01 13 80094986 80094986 G A NDFIP2 Silent p.E121E 0.23 TCGA-BP-5000-01 14 24801009 24801009 G C ADCY4 Silent p.T218T 0.31 TCGA-BP-5000-01 15 66791809 66791809 G A RPL4 Missense_Mutation p.P407L 0.20 tolerated_low_confidence(0.14) unknown(0) TCGA-BP-5000-01 15 86940775 86940775 C T AGBL1 Silent p.G805G 0.18 TCGA-BP-5000-01 16 30939867 30939867 C T FBXL19 Missense_Mutation p.P256L 0.32 tolerated(0.39) benign(0.001) TCGA-BP-5000-01 16 31141808 31141808 C T KAT8 Silent p.V346V 0.13 TCGA-BP-5000-01 17 71204408 71204408 G A FAM104A 3'UTR 0.29 TCGA-BP-5000-01 19 22271484 22271484 C T ZNF257 Missense_Mutation p.T311I 0.14 deleterious(0.02) probably_damaging(0.973) TCGA-BP-5000-01 19 52918813 52918813 T C ZNF528 Silent p.T236T 0.20 TCGA-BP-5000-01 1 118581935 118581935 T G SPAG17 Missense_Mutation p.E1100A 0.22 tolerated(0.21) benign(0.115) TCGA-BP-5000-01 1 155028946 155028946 G A ADAM15 Missense_Mutation p.M333I 0.20 deleterious(0.01) possibly_damaging(0.457) TCGA-BP-5000-01 1 155291906 155291906 C A RUSC1 Silent p.P114P 0.19 TCGA-BP-5000-01 1 201970845 201970846 AC T RNPEP Frame_Shift_Del p.Y459Ffs*25 0.16 TCGA-BP-5000-01 1 225599096 225599096 T A LBR Silent p.R377R 0.20 TCGA-BP-5000-01 1 244849896 244849896 C A DESI2 Intron 0.22 TCGA-BP-5000-01 1 41222990 41222991 TC GTGTG NFYC Intron 0.23 TCGA-BP-5000-01 1 54605450 54605450 C T CDCP2 Missense_Mutation p.G365S 0.20 deleterious(0) probably_damaging(1) TCGA-BP-5000-01 1 878408 878408 C A SAMD11 Missense_Mutation p.P512T 0.20 deleterious(0.01) probably_damaging(0.982) TCGA-BP-5000-01 1 878409 878409 C T SAMD11 Missense_Mutation p.P512L 0.21 deleterious(0) probably_damaging(0.988) TCGA-BP-5000-01 20 39990048 39990048 T G EMILIN3 Silent p.R721R 0.14 TCGA-BP-5000-01 21 47531392 47531392 T C COL6A2 Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-BP-5000-01 2 152548582 152548582 T C NEB Silent p.Q699Q 0.23 TCGA-BP-5000-01 2 179643760 179643760 C T TTN Missense_Mutation p.R1350H 0.22 TCGA-BP-5000-01 2 234602164 234602164 A G UGT1A6 Missense_Mutation p.R172G 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-BP-5000-01 2 238820196 238820196 C T RAMP1 Missense_Mutation p.T73I 0.19 deleterious(0) probably_damaging(0.972) TCGA-BP-5000-01 3 46753884 46753884 C A PRSS50 Missense_Mutation p.S337I 0.09 deleterious(0.03) possibly_damaging(0.902) TCGA-BP-5000-01 3 49734822 49734822 T C RNF123 Missense_Mutation p.S92P 0.27 tolerated(0.1) benign(0.372) TCGA-BP-5000-01 4 3208255 3208255 G T HTT Silent p.T1917T 0.19 TCGA-BP-5000-01 4 57204599 57204599 C T AASDH Missense_Mutation p.C1089Y 0.07 deleterious(0) probably_damaging(0.971) TCGA-BP-5000-01 4 74606347 74606347 C G IL8 5'UTR 0.20 TCGA-BP-5000-01 5 140553992 140553992 G T PCDHB7 Missense_Mutation p.A526S 0.22 tolerated_low_confidence(0.06) benign(0.043) TCGA-BP-5000-01 5 180622113 180622113 C T TRIM7 3'UTR 0.16 TCGA-BP-5000-01 5 61779841 61779841 C T IPO11 Silent p.S382S 0.14 TCGA-BP-5000-01 6 33382506 33382507 - T PHF1 Frame_Shift_Ins p.S318Ffs*6 0.16 TCGA-BP-5000-01 6 33690404 33690404 A G IP6K3 3'UTR 0.40 TCGA-BP-5000-01 6 57498975 57498975 T C PRIM2 3'UTR 0.20 TCGA-BP-5000-01 7 150027696 150027696 G A ZBED6CL Missense_Mutation p.R68H 0.19 tolerated(0.19) benign(0.039) TCGA-BP-5000-01 7 21789334 21789334 G C DNAH11 Missense_Mutation p.K2911N 0.26 probably_damaging(0.984) TCGA-BP-5000-01 8 125500921 125500921 T C TATDN1 Missense_Mutation p.M270V 0.16 tolerated(1) benign(0.004) TCGA-BP-5000-01 8 1728474 1728474 T G CLN8 Missense_Mutation p.F201C 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-BP-5000-01 8 69351861 69351861 G A C8orf34 Nonsense_Mutation p.W152* 0.16 TCGA-BP-5000-01 X 129146951 129146951 G C BCORL1 Missense_Mutation p.G68A 0.52 unknown(0) TCGA-BP-5000-01 X 53227751 53227751 G A KDM5C Nonsense_Mutation p.Q813* 0.44 TCGA-BP-5001-01 10 116045700 116045700 C A VWA2 Missense_Mutation p.L334M 0.12 deleterious(0.02) benign(0.357) TCGA-BP-5001-01 10 28878756 28878756 A - WAC Frame_Shift_Del p.K159Nfs*33 0.29 TCGA-BP-5001-01 10 70695795 70695795 A G DDX50 Missense_Mutation p.T519A 0.28 tolerated(1) benign(0.002) TCGA-BP-5001-01 11 76261122 76261122 G A C11orf30 Missense_Mutation p.D1301N 0.36 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-BP-5001-01 12 101017385 101017385 G A GAS2L3 Missense_Mutation p.D268N 0.30 deleterious(0) probably_damaging(0.998) TCGA-BP-5001-01 12 120622633 120622633 C T GCN1L1 Missense_Mutation p.R60Q 0.27 possibly_damaging(0.859) TCGA-BP-5001-01 12 21454187 21454187 T A SLCO1A2 Silent p.G202G 0.21 TCGA-BP-5001-01 12 53853119 53853119 G A PCBP2 Missense_Mutation p.V103M 0.34 deleterious(0.02) possibly_damaging(0.837) TCGA-BP-5001-01 12 6701634 6701634 A T CHD4 Missense_Mutation p.L958H 0.31 deleterious(0) probably_damaging(0.98) TCGA-BP-5001-01 14 74203755 74203764 GACTGATGGC A ELMSAN1 In_Frame_Del p.K562_V565delinsN 0.26 TCGA-BP-5001-01 14 86088842 86088842 C T FLRT2 Silent p.I328I 0.26 TCGA-BP-5001-01 16 67190505 67190505 T C TRADD Missense_Mutation p.E20G 0.29 tolerated(0.06) possibly_damaging(0.479) TCGA-BP-5001-01 17 48543170 48543170 C T CHAD Missense_Mutation p.R279H 0.24 deleterious(0.05) possibly_damaging(0.781) TCGA-BP-5001-01 19 39915872 39915872 A G PLEKHG2 Missense_Mutation p.T1367A 0.15 tolerated_low_confidence(0.21) benign(0.001) TCGA-BP-5001-01 19 5231368 5231368 C A PTPRS Missense_Mutation p.G703V 0.07 deleterious(0) probably_damaging(0.943) TCGA-BP-5001-01 1 109192997 109192997 C T HENMT1 Missense_Mutation p.A198T 0.04 deleterious(0.03) possibly_damaging(0.823) TCGA-BP-5001-01 1 11227530 11227530 A G MTOR Missense_Mutation p.L1433S 0.26 deleterious(0) benign(0.141) TCGA-BP-5001-01 1 157494128 157494128 C T FCRL5 Missense_Mutation p.C727Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-BP-5001-01 1 158582607 158582607 C A SPTA1 Missense_Mutation p.Q2378H 0.30 deleterious(0.02) probably_damaging(0.963) TCGA-BP-5001-01 1 20976948 20976948 G A PINK1 Missense_Mutation p.A504T 0.07 deleterious(0) probably_damaging(1) TCGA-BP-5001-01 1 21133885 21133885 C T EIF4G3 Missense_Mutation p.G1568D 0.26 deleterious(0) probably_damaging(1) TCGA-BP-5001-01 1 2234822 2234822 G A SKI Silent p.P398P 0.35 TCGA-BP-5001-01 1 243581287 243581287 T C SDCCAG8 Silent p.L588L 0.21 TCGA-BP-5001-01 20 61574871 61574871 C T GID8 Missense_Mutation p.R114C 0.26 deleterious(0) probably_damaging(0.999) TCGA-BP-5001-01 2 102956734 102956734 T G IL1RL1 Splice_Site p.X149_splice 0.25 TCGA-BP-5001-01 2 163279898 163279898 T G KCNH7 Missense_Mutation p.E701A 0.23 deleterious(0.02) possibly_damaging(0.882) TCGA-BP-5001-01 2 200193631 200193631 T A SATB2 Silent p.G392G 0.22 TCGA-BP-5001-01 2 234178666 234178666 G T ATG16L1 Silent p.L220L 0.28 TCGA-BP-5001-01 2 241555893 241555893 G A GPR35 5'UTR 0.20 TCGA-BP-5001-01 2 43973091 43973091 A T PLEKHH2 Silent p.T1214T 0.37 TCGA-BP-5001-01 3 169502437 169502437 G T MYNN Missense_Mutation p.C504F 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-BP-5001-01 3 52842629 52842629 G A ITIH3 Missense_Mutation p.V869I 0.30 tolerated(0.57) benign(0.032) TCGA-BP-5001-01 3 75480060 75480060 C A RP11-803B1.8 5'Flank 0.09 TCGA-BP-5001-01 4 156723600 156723600 G A GUCY1B3 Missense_Mutation p.V428M 0.30 deleterious(0) probably_damaging(0.993) TCGA-BP-5001-01 4 2833702 2833702 A G SH3BP2 Missense_Mutation p.E525G 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.817) TCGA-BP-5001-01 5 140718869 140718869 G T PCDHGA2 Nonsense_Mutation p.E111* 0.19 TCGA-BP-5001-01 5 140731420 140731420 G T PCDHGB1 Missense_Mutation p.R531S 0.06 tolerated(0.17) benign(0.081) TCGA-BP-5001-01 6 112513053 112513053 C G LAMA4 Splice_Site p.X168_splice 0.39 TCGA-BP-5001-01 7 117831972 117831972 C G NAA38 Silent p.V69V 0.06 TCGA-BP-5001-01 7 21639512 21639512 C T DNAH11 Silent p.H925H 0.09 TCGA-BP-5001-01 8 126075842 126075842 T C KIAA0196 Missense_Mutation p.K444E 0.26 tolerated(0.31) benign(0.111) TCGA-BP-5001-01 8 17401026 17401026 G A SLC7A2 Missense_Mutation p.A100T 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-BP-5001-01 9 98209386 98209386 C G PTCH1 Silent p.P1384P 0.30 TCGA-BP-5001-01 X 119004755 119004755 G A RNF113A Silent p.V274V 0.21 TCGA-BP-5004-01 10 13523079 13523079 A G BEND7 Missense_Mutation p.S243P 0.23 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-BP-5004-01 10 32863446 32863446 A T C10ORF68 Intron 0.34 TCGA-BP-5004-01 11 1955173 1955173 G A TNNT3 Missense_Mutation p.A101T 0.23 tolerated(0.09) possibly_damaging(0.646) TCGA-BP-5004-01 11 61608124 61608124 A C FADS2 Missense_Mutation p.Y182S 0.25 deleterious(0.03) benign(0.012) TCGA-BP-5004-01 11 70172880 70172888 AAATCTGAA - PPFIA1 In_Frame_Del p.K296_E298del 0.29 TCGA-BP-5004-01 11 71548458 71548458 C G DEFB108B Missense_Mutation p.F24L 0.31 tolerated(0.51) benign(0) TCGA-BP-5004-01 11 75852292 75852292 A T UVRAG Silent p.S645S 0.19 TCGA-BP-5004-01 11 92085830 92085830 C T FAT3 Silent p.D184D 0.05 TCGA-BP-5004-01 12 121154504 121154504 C G UNC119B Missense_Mutation p.F144L 0.23 deleterious(0.04) benign(0.225) TCGA-BP-5004-01 12 51127944 51127944 T C DIP2B Silent p.T1336T 0.30 TCGA-BP-5004-01 12 57985037 57985037 G C PIP4K2C 5'Flank 0.31 TCGA-BP-5004-01 12 7053852 7053852 A C C12orf57 Intron 0.33 TCGA-BP-5004-01 13 114469231 114469231 G T TMEM255B Splice_Site p.X63_splice 0.39 TCGA-BP-5004-01 14 21359893 21359893 G - RNASE3 Frame_Shift_Del p.M19Wfs*27 0.18 TCGA-BP-5004-01 14 21526113 21526113 C A RNASE8 Missense_Mutation p.A21E 0.05 deleterious(0.04) possibly_damaging(0.721) TCGA-BP-5004-01 14 73759584 73759584 T C NUMB Splice_Site p.X104_splice 0.41 TCGA-BP-5004-01 15 43724668 43724668 C - TP53BP1 Frame_Shift_Del p.E1135Kfs*14 0.19 TCGA-BP-5004-01 15 63030474 63030474 A T TLN2 Missense_Mutation p.D1210V 0.36 deleterious(0.05) benign(0.41) TCGA-BP-5004-01 16 1990864 1990864 C G MSRB1 Missense_Mutation p.L78F 0.31 deleterious(0) probably_damaging(0.99) TCGA-BP-5004-01 16 30078964 30078964 C - ALDOA Frame_Shift_Del p.G157Vfs*7 0.18 TCGA-BP-5004-01 16 744652 744652 G A FBXL16 Missense_Mutation p.R425C 0.15 deleterious(0.01) possibly_damaging(0.794) TCGA-BP-5004-01 17 1586888 1586888 T G PRPF8 Missense_Mutation p.I70L 0.24 tolerated(0.08) benign(0.019) TCGA-BP-5004-01 17 34185482 34185482 G T C17orf66 Silent p.V329V 0.38 TCGA-BP-5004-01 17 37785438 37785438 C G PPP1R1B Missense_Mutation p.P33A 0.20 deleterious(0) probably_damaging(0.999) TCGA-BP-5004-01 17 48470252 48470252 A T LRRC59 Missense_Mutation p.F58I 0.24 deleterious(0) probably_damaging(1) TCGA-BP-5004-01 17 9613418 9613418 C T USP43 Silent p.S719S 0.10 TCGA-BP-5004-01 18 2567241 2567241 G A METTL4 5'UTR 0.21 TCGA-BP-5004-01 18 61310791 61310791 G C SERPINB4 Silent p.A7A 0.22 TCGA-BP-5004-01 19 22836216 22836216 C A ZNF492 Nonsense_Mutation p.Y5* 0.15 TCGA-BP-5004-01 19 54746128 54746128 G C LILRA6 Missense_Mutation p.S43R 0.12 tolerated(0.22) benign(0.083) TCGA-BP-5004-01 19 9062883 9062883 G A MUC16 Missense_Mutation p.T8188I 0.27 unknown(0) TCGA-BP-5004-01 1 155171891 155171892 - TGG THBS3 Intron 0.31 TCGA-BP-5004-01 1 155829566 155829566 C - SYT11 Frame_Shift_Del p.N6Ifs*27 0.22 TCGA-BP-5004-01 20 62122020 62122020 C T EEF1A2 Missense_Mutation p.A281T 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.51) TCGA-BP-5004-01 21 37783835 37783835 A G CHAF1B Missense_Mutation p.T332A 0.24 deleterious(0) possibly_damaging(0.782) TCGA-BP-5004-01 2 120125447 120125448 - CCCC DBI Intron 0.25 TCGA-BP-5004-01 2 149793902 149793902 G T KIF5C Missense_Mutation p.K132N 0.43 deleterious(0) probably_damaging(0.995) TCGA-BP-5004-01 2 178482340 178482340 C T TTC30A Missense_Mutation p.A364T 0.22 deleterious(0) probably_damaging(0.979) TCGA-BP-5004-01 2 218713105 218713105 C A TNS1 Missense_Mutation p.G587V 0.16 deleterious(0.01) benign(0.236) TCGA-BP-5004-01 2 32117195 32117195 T G MEMO1 Missense_Mutation p.D149A 0.21 tolerated(0.12) benign(0.103) TCGA-BP-5004-01 2 37319307 37319307 G C GPATCH11 Splice_Site p.X146_splice 0.19 TCGA-BP-5004-01 3 129023468 129023468 C T HMCES Nonsense_Mutation p.Q289* 0.26 TCGA-BP-5004-01 3 193159265 193159267 AGG - ATP13A4 In_Frame_Del p.S809_L810delinsR 0.22 TCGA-BP-5004-01 3 50231595 50231595 A G GNAT1 Missense_Mutation p.I217V 0.53 tolerated(0.13) benign(0.195) TCGA-BP-5004-01 3 52940142 52940142 A - SFMBT1 Frame_Shift_Del p.I816Nfs*3 0.27 TCGA-BP-5004-01 3 97851579 97851579 T C OR5H1 Missense_Mutation p.V13A 0.03 deleterious(0.03) benign(0.033) TCGA-BP-5004-01 4 140216207 140216209 AAG - NDUFC1 In_Frame_Del p.F53del 0.32 TCGA-BP-5004-01 5 140236546 140236546 G A PCDHA10 Missense_Mutation p.D305N 0.46 deleterious_low_confidence(0.02) benign(0.022) TCGA-BP-5004-01 5 179264300 179264300 A C SQSTM1 3'UTR 0.26 TCGA-BP-5004-01 5 54585151 54585151 G A DHX29 Missense_Mutation p.A338V 0.30 tolerated(0.29) benign(0.013) TCGA-BP-5004-01 6 168363200 168363200 C T MLLT4 Missense_Mutation p.R1632C 0.22 deleterious_low_confidence(0) unknown(0) TCGA-BP-5004-01 6 31324032 31324032 C G HLA-B Silent p.A177A 0.30 TCGA-BP-5004-01 6 56492917 56492927 GTAGTACTTCA - DST Frame_Shift_Del p.L966Qfs*9 0.20 TCGA-BP-5004-01 6 76570739 76570739 G C MYO6 Splice_Site p.X492_splice 0.21 TCGA-BP-5004-01 7 122342196 122342196 G C RNF148 Silent p.A203A 0.27 TCGA-BP-5004-01 7 42006052 42006052 G T GLI3 Missense_Mutation p.S873R 0.36 deleterious(0) probably_damaging(0.998) TCGA-BP-5004-01 7 6190120 6190120 C T USP42 Silent p.G728G 0.21 TCGA-BP-5004-01 7 76916144 76916144 C T CCDC146 Silent p.D726D 0.33 TCGA-BP-5004-01 9 130502552 130502552 G - SH2D3C Frame_Shift_Del p.L729Sfs*10 0.24 TCGA-BP-5004-01 9 137623935 137623935 G A COL5A1 Missense_Mutation p.E451K 0.22 probably_damaging(0.941) TCGA-BP-5004-01 X 72434219 72434219 G A NAP1L2 Missense_Mutation p.A37V 0.06 tolerated_low_confidence(0.22) benign(0.002) TCGA-BP-5006-01 10 20465933 20465933 C G PLXDC2 Missense_Mutation p.R297G 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-BP-5006-01 10 51994305 51994305 T C ASAH2 Missense_Mutation p.D232G 0.22 tolerated(0.08) benign(0.392) TCGA-BP-5006-01 10 71868913 71868913 G A H2AFY2 Silent p.A301A 0.26 TCGA-BP-5006-01 11 17190234 17190234 T C PIK3C2A Missense_Mutation p.H352R 0.03 tolerated_low_confidence(0.12) benign(0) TCGA-BP-5006-01 12 53662902 53662902 A G ESPL1 Missense_Mutation p.Q59R 0.23 tolerated(0.06) possibly_damaging(0.889) TCGA-BP-5006-01 12 7869602 7869602 G A DPPA3 Missense_Mutation p.V137M 0.21 deleterious(0.03) benign(0.291) TCGA-BP-5006-01 12 80650146 80650146 A C OTOGL Silent p.I530I 0.19 TCGA-BP-5006-01 13 101720364 101720364 G A NALCN Missense_Mutation p.S1451F 0.25 deleterious(0) probably_damaging(1) TCGA-BP-5006-01 13 31712675 31712675 C T HSPH1 Missense_Mutation p.E747K 0.08 deleterious(0) possibly_damaging(0.524) TCGA-BP-5006-01 13 49776041 49776041 A T FNDC3A Missense_Mutation p.E1031D 0.19 deleterious(0.04) benign(0.044) TCGA-BP-5006-01 14 45644583 45644583 G C FANCM Missense_Mutation p.D876H 0.07 deleterious(0.04) benign(0.016) TCGA-BP-5006-01 14 52508821 52508821 A T NID2 Splice_Site p.X609_splice 0.06 TCGA-BP-5006-01 16 23359975 23359975 G A SCNN1B Missense_Mutation p.G19S 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-BP-5006-01 17 36484635 36484664 GTCCATTCCTCTCTTGTTCTTTCATTTACC - GPR179 In_Frame_Del p.V1597_T1606del 0.10 TCGA-BP-5006-01 17 67310664 67310664 C T ABCA5 Intron 0.24 TCGA-BP-5006-01 17 80039936 80039936 T G FASN Missense_Mutation p.N2038H 0.20 deleterious(0) probably_damaging(0.979) TCGA-BP-5006-01 18 2547514 2547514 G C METTL4 Nonsense_Mutation p.S305* 0.22 TCGA-BP-5006-01 18 745701 745706 CACATA - YES1 Splice_Site p.X242_splice 0.17 TCGA-BP-5006-01 19 17760372 17760372 G A UNC13A Silent p.I488I 0.20 TCGA-BP-5006-01 19 39360226 39360226 C G RINL Missense_Mutation p.E487D 0.26 tolerated(0.25) probably_damaging(0.992) TCGA-BP-5006-01 19 44112165 44112165 G T ZNF428 Missense_Mutation p.D57E 0.31 tolerated_low_confidence(0.09) possibly_damaging(0.489) TCGA-BP-5006-01 19 53343757 53343758 TG - ZNF468 3'UTR 0.11 TCGA-BP-5006-01 1 145290497 145290497 C T NBPF10 5'Flank 0.03 TCGA-BP-5006-01 20 31657707 31657707 G A BPIFB3 Missense_Mutation p.R388H 0.20 tolerated(0.18) benign(0.383) TCGA-BP-5006-01 2 179185056 179185056 A G OSBPL6 Intron 0.28 TCGA-BP-5006-01 2 200790244 200790244 A - C2orf69 Frame_Shift_Del p.G266Vfs*5 0.17 TCGA-BP-5006-01 2 27851883 27851883 C A GPN1 5'UTR 0.25 TCGA-BP-5006-01 2 88425757 88425757 G C FABP1 Missense_Mutation p.Q60E 0.24 tolerated(0.31) benign(0.001) TCGA-BP-5006-01 3 10183788 10183788 C T VHL Missense_Mutation p.P86L 0.40 tolerated(0.07) probably_damaging(1) TCGA-BP-5006-01 3 127785928 127785928 C T SEC61A1 Silent p.V303V 0.15 TCGA-BP-5006-01 3 139279902 139279902 T - NMNAT3 Frame_Shift_Del p.S200Vfs*84 0.22 TCGA-BP-5006-01 3 150931635 150931635 A G P2RY14 Missense_Mutation p.I157T 0.23 deleterious(0.02) benign(0.032) TCGA-BP-5006-01 3 47161671 47161671 C G SETD2 Splice_Site p.X1485_splice 0.23 TCGA-BP-5006-01 4 148861016 148861016 T A ARHGAP10 Missense_Mutation p.S423R 0.25 deleterious(0) probably_damaging(0.996) TCGA-BP-5006-01 4 158257620 158257620 C G GRIA2 Missense_Mutation p.S522C 0.24 deleterious(0) probably_damaging(1) TCGA-BP-5006-01 5 153796478 153796478 G A GALNT10 Silent p.Q586Q 0.26 TCGA-BP-5006-01 5 35876615 35876615 C T IL7R 3'UTR 0.06 TCGA-BP-5006-01 5 55203210 55203210 T C IL31RA Missense_Mutation p.Y426H 0.26 deleterious(0) probably_damaging(0.999) TCGA-BP-5006-01 6 107009363 107009363 T C AIM1 Silent p.C1634C 0.20 TCGA-BP-5006-01 6 10898272 10898272 G A SYCP2L Missense_Mutation p.G122E 0.21 tolerated(0.52) benign(0.045) TCGA-BP-5006-01 6 32812250 32812250 T A PSMB8 5'Flank 0.30 TCGA-BP-5006-01 6 43592645 43592645 A T GTPBP2 Missense_Mutation p.V287D 0.18 deleterious(0) probably_damaging(0.987) TCGA-BP-5006-01 7 123332871 123332871 G A WASL Missense_Mutation p.P293S 0.22 tolerated(0.5) unknown(0) TCGA-BP-5006-01 7 129761893 129761893 G A KLHDC10 Splice_Site p.X211_splice 0.20 TCGA-BP-5006-01 7 66703498 66703498 G T TYW1 Missense_Mutation p.K727N 0.22 deleterious(0) possibly_damaging(0.891) TCGA-BP-5006-01 8 61768568 61768568 G A CHD7 Missense_Mutation p.C2324Y 0.19 probably_damaging(0.982) TCGA-BP-5006-01 8 8747924 8747924 A G MFHAS1 Missense_Mutation p.I882T 0.28 deleterious(0) benign(0.076) TCGA-BP-5006-01 9 123292386 123292386 C G CDK5RAP2 Missense_Mutation p.S232T 0.23 deleterious(0.02) benign(0.153) TCGA-BP-5006-01 X 119005873 119005873 A C NDUFA1 5'UTR 0.45 TCGA-BP-5006-01 X 135441605 135441605 A - GPR112 Frame_Shift_Del p.K2380Nfs*2 0.32 TCGA-BP-5006-01 X 153594983 153594983 T G FLNA Missense_Mutation p.K338Q 0.49 deleterious(0.01) benign(0.442) TCGA-BP-5006-01 X 57020792 57020794 GAG - SPIN3 In_Frame_Del p.P196del 0.46 TCGA-BP-5007-01 10 115885644 115885644 C A C10orf118 Splice_Site p.X871_splice 0.26 TCGA-BP-5007-01 10 70140991 70140991 G A RUFY2 Nonsense_Mutation p.Q404* 0.21 TCGA-BP-5007-01 10 91099779 91099779 T - IFIT3 Frame_Shift_Del p.F457Sfs*33 0.30 TCGA-BP-5007-01 11 60265014 60265014 C G MS4A12 Missense_Mutation p.P75A 0.30 tolerated(0.16) benign(0.11) TCGA-BP-5007-01 11 61495757 61495757 G A DAGLA Missense_Mutation p.E257K 0.35 tolerated(0.09) benign(0.023) TCGA-BP-5007-01 11 6648210 6648210 G A DCHS1 Silent p.I2020I 0.07 TCGA-BP-5007-01 11 7722880 7722880 G A OVCH2 Silent p.D234D 0.09 TCGA-BP-5007-01 12 54403161 54403161 C A HOXC8 Missense_Mutation p.S31R 0.29 deleterious(0.03) benign(0.266) TCGA-BP-5007-01 12 6776846 6776846 T A ZNF384 3'UTR 0.36 TCGA-BP-5007-01 12 95645766 95645766 A T VEZT Missense_Mutation p.E29D 0.31 deleterious(0.01) probably_damaging(0.971) TCGA-BP-5007-01 12 9875113 9875113 C A CLECL1 3'UTR 0.09 TCGA-BP-5007-01 13 92345764 92345764 A T GPC5 Missense_Mutation p.R217W 0.31 deleterious(0) probably_damaging(0.983) TCGA-BP-5007-01 14 45537687 45537687 C T FAM179B Silent p.L1551L 0.36 TCGA-BP-5007-01 15 53908347 53908347 G C WDR72 Missense_Mutation p.L686V 0.19 tolerated(0.63) probably_damaging(0.947) TCGA-BP-5007-01 15 63955350 63955350 T C HERC1 Missense_Mutation p.I2912V 0.04 benign(0) TCGA-BP-5007-01 16 1639724 1639724 C T IFT140 Missense_Mutation p.S231N 0.33 tolerated(0.15) benign(0.005) TCGA-BP-5007-01 16 30380671 30380671 C T TBC1D10B Silent p.G278G 0.27 TCGA-BP-5007-01 16 56701946 56701946 A G MT1G 5'UTR 0.39 TCGA-BP-5007-01 17 72340956 72340956 C A KIF19 Silent p.A213A 0.36 TCGA-BP-5007-01 18 57026429 57026429 C T LMAN1 Silent p.L16L 0.38 TCGA-BP-5007-01 19 1234610 1234610 T C C19orf26 Missense_Mutation p.H196R 0.64 tolerated(0.7) benign(0.034) TCGA-BP-5007-01 19 21909595 21909595 G T ZNF100 Missense_Mutation p.H507N 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-BP-5007-01 19 2223398 2223398 G A DOT1L Missense_Mutation p.R1170Q 0.29 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-BP-5007-01 19 47226196 47226196 G A STRN4 Missense_Mutation p.P600S 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-BP-5007-01 1 11217230 11217230 C A MTOR Missense_Mutation p.C1483F 0.03 deleterious(0) probably_damaging(0.991) TCGA-BP-5007-01 1 154184747 154184747 C T C1orf43 Intron 0.03 TCGA-BP-5007-01 1 16372093 16372093 C T CLCNKB Silent p.G47G 0.07 TCGA-BP-5007-01 1 18688657 18688657 T C IGSF21 Missense_Mutation p.F158S 0.38 deleterious(0.01) possibly_damaging(0.653) TCGA-BP-5007-01 1 27216524 27216524 T C GPN2 Missense_Mutation p.K22E 0.38 deleterious(0) probably_damaging(1) TCGA-BP-5007-01 1 46871335 46871335 A T FAAH Silent p.S218S 0.05 TCGA-BP-5007-01 1 59125681 59125681 T A MYSM1 Missense_Mutation p.E825D 0.35 tolerated_low_confidence(0.08) benign(0.004) TCGA-BP-5007-01 20 49366663 49366664 AA - PARD6B Frame_Shift_Del p.N253* 0.30 TCGA-BP-5007-01 21 33066569 33066569 C T SCAF4 Missense_Mutation p.V424I 0.25 benign(0.064) TCGA-BP-5007-01 2 27880496 27880497 AG - SUPT7L Frame_Shift_Del p.C154Sfs*18 0.42 TCGA-BP-5007-01 5 82948369 82948369 G T HAPLN1 Silent p.V125V 0.26 TCGA-BP-5007-01 6 25770630 25770630 C G SLC17A4 Missense_Mutation p.Q184E 0.31 deleterious(0.03) benign(0.076) TCGA-BP-5007-01 7 134254201 134254201 A C AKR1B15 Missense_Mutation p.K119Q 0.32 tolerated(0.4) benign(0.003) TCGA-BP-5007-01 8 144732593 144732593 G A ZNF623 Missense_Mutation p.C184Y 0.05 deleterious(0) probably_damaging(0.985) TCGA-BP-5007-01 9 131851258 131851258 A C DOLPP1 Missense_Mutation p.Q230P 0.15 tolerated(0.1) probably_damaging(0.916) TCGA-BP-5008-01 10 100015482 100015482 C G LOXL4 Missense_Mutation p.W481C 0.20 deleterious(0) probably_damaging(0.998) TCGA-BP-5008-01 10 73111405 73111405 C G SLC29A3 Missense_Mutation p.T157S 0.19 tolerated(0.05) probably_damaging(0.987) TCGA-BP-5008-01 10 76789332 76789332 A T KAT6B Missense_Mutation p.I1584F 0.05 benign(0.221) TCGA-BP-5008-01 10 93695500 93695500 A T BTAF1 Missense_Mutation p.K34M 0.20 deleterious(0) probably_damaging(0.928) TCGA-BP-5008-01 12 107937769 107937769 G A BTBD11 Missense_Mutation p.G448D 0.07 deleterious(0.01) possibly_damaging(0.504) TCGA-BP-5008-01 12 21353532 21353532 G A SLCO1B1 Missense_Mutation p.G354D 0.18 deleterious(0) probably_damaging(0.995) TCGA-BP-5008-01 12 53700821 53700821 G A C12orf10 Missense_Mutation p.C340Y 0.20 deleterious(0) possibly_damaging(0.737) TCGA-BP-5008-01 12 53700822 53700822 C A C12orf10 Nonsense_Mutation p.C340* 0.21 TCGA-BP-5008-01 12 56669791 56669791 G A CS Silent p.L259L 0.21 TCGA-BP-5008-01 12 7362325 7362333 ACCAGAGTG T PEX5 Frame_Shift_Del p.N551Ifs*23 0.21 TCGA-BP-5008-01 13 60584726 60584726 A T DIAPH3 Missense_Mutation p.N283K 0.20 tolerated(0.08) benign(0.035) TCGA-BP-5008-01 14 36133906 36133906 A G RALGAPA1 Missense_Mutation p.L1251P 0.25 deleterious(0) probably_damaging(0.999) TCGA-BP-5008-01 14 50805672 50805677 TCAGGG - CDKL1 In_Frame_Del p.D243_P244del 0.13 TCGA-BP-5008-01 15 40866065 40866065 C G RPUSD2 Missense_Mutation p.L415V 0.05 deleterious(0.02) possibly_damaging(0.831) TCGA-BP-5008-01 15 72192081 72192081 C G MYO9A Missense_Mutation p.R1139S 0.04 tolerated(0.08) possibly_damaging(0.628) TCGA-BP-5008-01 16 10769818 10769825 TCGCCAGC - TEKT5 Frame_Shift_Del p.L360Dfs*111 0.21 TCGA-BP-5008-01 16 1866929 1866929 T C HAGH Missense_Mutation p.N238D 0.16 deleterious(0) probably_damaging(0.981) TCGA-BP-5008-01 16 20796410 20796410 G T ACSM3 Missense_Mutation p.G375V 0.12 tolerated(0.37) probably_damaging(0.983) TCGA-BP-5008-01 19 12036011 12036011 T A ZNF763 5'UTR 0.17 TCGA-BP-5008-01 19 1881411 1881411 G T ABHD17A Missense_Mutation p.P52H 0.20 deleterious_low_confidence(0) possibly_damaging(0.605) TCGA-BP-5008-01 19 36304176 36304176 G T PRODH2 Missense_Mutation p.P3H 0.24 possibly_damaging(0.893) TCGA-BP-5008-01 1 144930951 144930951 G T PDE4DIP Intron 0.10 TCGA-BP-5008-01 1 230979640 230979640 A T C1orf198 Missense_Mutation p.S129R 0.16 deleterious(0) probably_damaging(0.999) TCGA-BP-5008-01 1 26663759 26663759 G A AIM1L Silent p.L378L 0.24 TCGA-BP-5008-01 1 40537261 40537261 C A CAP1 3'UTR 0.32 TCGA-BP-5008-01 1 95710200 95710200 G T RWDD3 Missense_Mutation p.M173I 0.06 tolerated(0.06) possibly_damaging(0.77) TCGA-BP-5008-01 20 37632409 37632409 T A DHX35 Silent p.V290V 0.19 TCGA-BP-5008-01 22 16287319 16287319 G T POTEH Silent p.V189V 0.12 TCGA-BP-5008-01 22 18021869 18021869 C T CECR2 Silent p.L658L 0.12 TCGA-BP-5008-01 22 46930036 46930036 T - CELSR1 Frame_Shift_Del p.N1011Tfs*72 0.22 TCGA-BP-5008-01 2 11361380 11361380 T C ROCK2 Silent p.K401K 0.22 TCGA-BP-5008-01 2 120129819 120129819 A T DBI Splice_Site p.X125_splice 0.18 TCGA-BP-5008-01 2 196837108 196837108 A C DNAH7 Missense_Mutation p.L639R 0.19 deleterious(0) probably_damaging(0.997) TCGA-BP-5008-01 2 43924441 43924441 A C PLEKHH2 Missense_Mutation p.M212L 0.16 tolerated(0.45) benign(0) TCGA-BP-5008-01 2 68692023 68692026 AGCT - FBXO48 Frame_Shift_Del p.A85Cfs*6 0.11 TCGA-BP-5008-01 3 183389006 183389006 A T KLHL24 Missense_Mutation p.D470V 0.06 deleterious(0) probably_damaging(0.974) TCGA-BP-5008-01 4 126389800 126389800 G C FAT4 Missense_Mutation p.L4011F 0.21 benign(0.001) TCGA-BP-5008-01 4 126389801 126389801 C A FAT4 Missense_Mutation p.L4012I 0.21 benign(0.011) TCGA-BP-5008-01 4 74459276 74459276 A C RASSF6 Missense_Mutation p.L92R 0.15 deleterious(0.04) benign(0.327) TCGA-BP-5008-01 5 147781573 147781573 A G FBXO38 Silent p.L97L 0.17 TCGA-BP-5008-01 5 178579193 178579193 T G ADAMTS2 Missense_Mutation p.K527Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-BP-5008-01 6 151153138 151153138 T C PLEKHG1 Missense_Mutation p.L964P 0.21 tolerated(0.27) benign(0) TCGA-BP-5008-01 6 28542935 28542935 T A SCAND3 Missense_Mutation p.Q516L 0.08 deleterious_low_confidence(0) benign(0.107) TCGA-BP-5008-01 7 149544912 149544912 C A ZNF862 Silent p.A110A 0.12 TCGA-BP-5008-01 7 43400541 43400541 A T HECW1 Missense_Mutation p.T173S 0.15 deleterious(0) benign(0.297) TCGA-BP-5008-01 8 13259102 13259102 C T DLC1 Silent p.A350A 0.04 TCGA-BP-5008-01 8 99054939 99054939 T C RPL30 Missense_Mutation p.N78D 0.24 deleterious(0.01) benign(0.386) TCGA-BP-5008-01 9 107564349 107564349 G T ABCA1 Missense_Mutation p.L1562I 0.20 deleterious(0.03) benign(0.155) TCGA-BP-5008-01 9 12693912 12693912 C T TYRP1 Intron 0.09 TCGA-BP-5008-01 9 21304871 21304871 C G IFNA5 Missense_Mutation p.V129L 0.18 tolerated(0.33) benign(0.003) TCGA-BP-5008-01 9 79955356 79955357 AC - VPS13A Frame_Shift_Del p.T2306* 0.16 TCGA-BP-5008-01 9 84531485 84531485 A T SPATA31D5P RNA 0.28 TCGA-BP-5008-01 X 49840554 49840554 A G CLCN5 Missense_Mutation p.N174D 0.11 tolerated(0.19) benign(0.117) TCGA-BP-5008-01 X 56291625 56291625 G T KLF8 Missense_Mutation p.V32F 0.12 deleterious_low_confidence(0) possibly_damaging(0.626) TCGA-BP-5009-01 10 12111000 12111000 G A DHTKD1 5'UTR 0.21 TCGA-BP-5009-01 11 102482517 102482517 T G MMP20 Missense_Mutation p.E164D 0.23 tolerated(0.11) benign(0.099) TCGA-BP-5009-01 11 108186836 108186836 T - ATM Frame_Shift_Del p.Q2066Rfs*16 0.26 TCGA-BP-5009-01 11 22397548 22397548 C G SLC17A6 Missense_Mutation p.L399V 0.19 deleterious(0.01) benign(0.248) TCGA-BP-5009-01 11 4388624 4388624 A G OR52B4 Missense_Mutation p.I301T 0.14 deleterious(0) probably_damaging(0.947) TCGA-BP-5009-01 11 56258042 56258042 G A OR5M8 Nonsense_Mutation p.Q269* 0.14 TCGA-BP-5009-01 11 56258050 56258050 G C OR5M8 Missense_Mutation p.S266C 0.16 deleterious(0) benign(0.309) TCGA-BP-5009-01 11 63714450 63714450 G A NAA40 Missense_Mutation p.V44M 0.03 tolerated(0.05) benign(0.36) TCGA-BP-5009-01 11 68029933 68029933 G A C11orf24 Missense_Mutation p.T177I 0.16 tolerated(0.1) unknown(0) TCGA-BP-5009-01 11 75113456 75113456 C T RPS3 Missense_Mutation p.R122C 0.22 tolerated(0.08) benign(0.111) TCGA-BP-5009-01 11 92533045 92533045 A G FAT3 Missense_Mutation p.Q2289R 0.25 benign(0.044) TCGA-BP-5009-01 11 94308185 94308185 G C PIWIL4 Missense_Mutation p.G63R 0.28 deleterious(0.02) benign(0.398) TCGA-BP-5009-01 12 131357432 131357432 C T RAN Missense_Mutation p.H30Y 0.08 deleterious(0.01) possibly_damaging(0.878) TCGA-BP-5009-01 12 21918783 21918783 G T KCNJ8 Silent p.R383R 0.16 TCGA-BP-5009-01 12 9248234 9248234 G C A2M Missense_Mutation p.D638E 0.05 tolerated(0.24) benign(0.005) TCGA-BP-5009-01 13 52952408 52952408 G A THSD1 Missense_Mutation p.A566V 0.28 deleterious(0) possibly_damaging(0.626) TCGA-BP-5009-01 15 75092775 75092775 G A CSK Missense_Mutation p.G162E 0.15 deleterious(0) probably_damaging(0.999) TCGA-BP-5009-01 15 78917389 78917389 G T CHRNB4 3'UTR 0.21 TCGA-BP-5009-01 15 78917390 78917390 G A CHRNB4 3'UTR 0.21 TCGA-BP-5009-01 16 31160816 31160816 A G PRSS36 Missense_Mutation p.L26P 0.08 deleterious(0.04) benign(0.004) TCGA-BP-5009-01 17 1633775 1633775 T C WDR81 Missense_Mutation p.Y1257H 0.24 deleterious(0) probably_damaging(1) TCGA-BP-5009-01 17 17380342 17380342 C T MED9 5'UTR 0.19 TCGA-BP-5009-01 17 39927930 39927930 G A JUP Silent p.T59T 0.10 TCGA-BP-5009-01 17 42338113 42338113 C T SLC4A1 Missense_Mutation p.R80H 0.17 tolerated(0.2) benign(0.053) TCGA-BP-5009-01 17 46928942 46928944 GAT - CALCOCO2 In_Frame_Del p.M243del 0.33 TCGA-BP-5009-01 17 7680805 7680805 C A DNAH2 Missense_Mutation p.N1700K 0.24 benign(0.371) TCGA-BP-5009-01 19 12637642 12637643 - CA ZNF564 Frame_Shift_Ins p.G427Vfs*15 0.21 TCGA-BP-5009-01 19 46136177 46136177 T C EML2 Missense_Mutation p.H352R 0.26 deleterious(0.04) benign(0.06) TCGA-BP-5009-01 19 49253332 49253332 C T FUT1 3'UTR 0.38 TCGA-BP-5009-01 19 57327329 57327329 T C PEG3 Silent p.G827G 0.08 TCGA-BP-5009-01 1 111731357 111731357 C G DENND2D Missense_Mutation p.D356H 0.03 tolerated(0.2) benign(0.017) TCGA-BP-5009-01 1 201030579 201030579 A T CACNA1S Missense_Mutation p.I1024K 0.28 deleterious(0) probably_damaging(0.991) TCGA-BP-5009-01 1 201687817 201687817 C A NAV1 Missense_Mutation p.S387Y 0.27 deleterious(0.01) possibly_damaging(0.9) TCGA-BP-5009-01 1 209799337 209799337 C T LAMB3 Silent p.P544P 0.27 TCGA-BP-5009-01 1 227216801 227216801 A G CDC42BPA Missense_Mutation p.L1295P 0.29 deleterious(0) probably_damaging(0.959) TCGA-BP-5009-01 1 243859016 243859016 C T AKT3 Missense_Mutation p.E17K 0.19 deleterious(0) probably_damaging(0.999) TCGA-BP-5009-01 1 26370857 26370857 C G SLC30A2 Missense_Mutation p.S117T 0.32 deleterious(0) probably_damaging(0.997) TCGA-BP-5009-01 20 43922450 43922450 G A MATN4 Missense_Mutation p.A568V 0.07 benign(0.019) TCGA-BP-5009-01 2 1499872 1499872 G A TPO Missense_Mutation p.M706I 0.33 tolerated(0.42) benign(0) TCGA-BP-5009-01 2 20403634 20403634 C T SDC1 Silent p.E189E 0.15 TCGA-BP-5009-01 2 216245654 216245654 C G FN1 Missense_Mutation p.D1772H 0.14 tolerated(0.1) possibly_damaging(0.873) TCGA-BP-5009-01 2 219142394 219142395 - T TMBIM1 Splice_Site p.X172_splice 0.24 TCGA-BP-5009-01 2 31165110 31165110 C - GALNT14 Frame_Shift_Del p.K302Nfs*27 0.27 TCGA-BP-5009-01 3 10183763 10183763 A T VHL Missense_Mutation p.N78Y 0.50 deleterious(0.02) probably_damaging(1) TCGA-BP-5009-01 3 48682540 48682540 G A CELSR3 Missense_Mutation p.P2634S 0.10 deleterious(0.05) benign(0.403) TCGA-BP-5009-01 3 93643109 93643109 C A PROS1 Splice_Site p.X79_splice 0.10 TCGA-BP-5009-01 4 114277376 114277376 C - ANK2 Frame_Shift_Del p.L2536Ffs*22 0.25 TCGA-BP-5009-01 4 178352921 178352921 A T AGA Missense_Mutation p.F328I 0.15 tolerated(0.05) possibly_damaging(0.79) TCGA-BP-5009-01 4 20550708 20550708 A C SLIT2 Missense_Mutation p.I816L 0.21 tolerated(0.12) benign(0.415) TCGA-BP-5009-01 4 2906737 2906737 A G ADD1 Missense_Mutation p.T470A 0.27 tolerated(0.1) possibly_damaging(0.607) TCGA-BP-5009-01 4 87692395 87692395 G C PTPN13 Missense_Mutation p.E1630D 0.35 tolerated(0.31) benign(0.011) TCGA-BP-5009-01 5 1294723 1294723 G A TERT Missense_Mutation p.A93V 0.23 tolerated(0.12) benign(0.095) TCGA-BP-5009-01 5 137230170 137230170 T G PKD2L2 Silent p.R132R 0.15 TCGA-BP-5009-01 6 143094139 143094139 T A HIVEP2 Silent p.P579P 0.21 TCGA-BP-5009-01 6 30692126 30692126 C A TUBB Silent p.T429T 0.27 TCGA-BP-5009-01 7 107545426 107545431 GACAAG - DLD In_Frame_Del p.D121_K122del 0.16 TCGA-BP-5009-01 7 112097100 112097100 C T IFRD1 Intron 0.14 TCGA-BP-5009-01 7 142180667 142180667 C G TRBV6-5 Silent p.L64L 0.02 TCGA-BP-5009-01 7 158472689 158472689 A C NCAPG2 Missense_Mutation p.M370R 0.37 deleterious(0) possibly_damaging(0.893) TCGA-BP-5009-01 7 21657267 21657267 G A DNAH11 Missense_Mutation p.V1381I 0.37 benign(0.003) TCGA-BP-5009-01 7 99950639 99950639 T C PILRB 5'UTR 0.26 TCGA-BP-5009-01 X 85213896 85213896 A C CHM Missense_Mutation p.I263M 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-BP-5009-01 Y 15361721 15361721 A G UTY 3'UTR 0.42 TCGA-BP-5010-01 10 14816481 14816481 C T FAM107B Missense_Mutation p.G61D 0.25 deleterious_low_confidence(0) benign(0.008) TCGA-BP-5010-01 10 45498976 45498976 C - ZNF22 Frame_Shift_Del p.Y55Ifs*128 0.11 TCGA-BP-5010-01 10 89711969 89711970 - C PTEN Frame_Shift_Ins p.K197Qfs*5 0.21 TCGA-BP-5010-01 11 33083247 33083248 - C TCP11L1 Frame_Shift_Ins p.H317Pfs*53 0.27 TCGA-BP-5010-01 11 56468235 56468235 C T OR9G1 Silent p.A124A 0.10 TCGA-BP-5010-01 11 66291217 66291217 A C BBS1 Missense_Mutation p.Q325P 0.28 tolerated(0.36) benign(0) TCGA-BP-5010-01 11 71809264 71809264 G T LAMTOR1 Intron 0.25 TCGA-BP-5010-01 12 103306603 103306603 A T PAH Missense_Mutation p.V45D 0.11 deleterious(0.01) possibly_damaging(0.477) TCGA-BP-5010-01 12 130184668 130184668 G T TMEM132D Missense_Mutation p.P219T 0.16 tolerated(0.52) benign(0.139) TCGA-BP-5010-01 14 31404443 31404443 A T STRN3 Missense_Mutation p.F305Y 0.19 deleterious(0.01) probably_damaging(0.952) TCGA-BP-5010-01 14 63453891 63453891 C T KCNH5 Missense_Mutation p.A150T 0.06 deleterious(0.01) possibly_damaging(0.631) TCGA-BP-5010-01 14 76349240 76349240 T - TTLL5 Frame_Shift_Del p.S1246Pfs*10 0.20 TCGA-BP-5010-01 14 96129988 96129988 T C TCL6 RNA 0.22 TCGA-BP-5010-01 15 102261432 102261432 T A TARSL2 Nonsense_Mutation p.K155* 0.17 TCGA-BP-5010-01 15 35196663 35196663 A T AQR Missense_Mutation p.F625L 0.19 tolerated(0.28) benign(0.007) TCGA-BP-5010-01 15 44877930 44877930 A T SPG11 Silent p.S1675S 0.17 TCGA-BP-5010-01 15 75942230 75942230 G A SNX33 Missense_Mutation p.V263I 0.21 deleterious(0) probably_damaging(0.993) TCGA-BP-5010-01 16 1257814 1257814 C T CACNA1H Silent p.V1036V 0.27 TCGA-BP-5010-01 16 20380853 20380853 G T PDILT Silent p.L359L 0.18 TCGA-BP-5010-01 16 23203706 23203706 A G SCNN1G Missense_Mutation p.T218A 0.15 tolerated(0.12) benign(0.036) TCGA-BP-5010-01 16 3727664 3727664 G C TRAP1 Intron 0.15 TCGA-BP-5010-01 16 70058574 70058574 C G PDXDC2P Splice_Site 0.28 TCGA-BP-5010-01 16 89657544 89657544 G A CPNE7 Missense_Mutation p.G468D 0.23 deleterious(0) probably_damaging(0.999) TCGA-BP-5010-01 17 39767653 39767653 T - KRT16 Frame_Shift_Del p.M239Cfs*6 0.12 TCGA-BP-5010-01 17 41926061 41926061 G A CD300LG Missense_Mutation p.R60H 0.26 tolerated(0.06) possibly_damaging(0.479) TCGA-BP-5010-01 18 226879 226882 TCAC - THOC1 Frame_Shift_Del p.S313Tfs*32 0.21 TCGA-BP-5010-01 18 63430077 63430077 A T CDH7 5'UTR 0.15 TCGA-BP-5010-01 19 31768802 31768802 C A TSHZ3 Missense_Mutation p.G633W 0.16 deleterious(0.01) possibly_damaging(0.907) TCGA-BP-5010-01 19 49517740 49517740 G A RUVBL2 Splice_Site p.X334_splice 0.17 TCGA-BP-5010-01 19 53612726 53612726 T C ZNF415 Missense_Mutation p.N191S 0.18 tolerated(0.07) benign(0.058) TCGA-BP-5010-01 19 8528506 8528506 T A HNRNPM Missense_Mutation p.M125K 0.23 deleterious(0) benign(0.03) TCGA-BP-5010-01 1 115144173 115144173 A C DENND2C Missense_Mutation p.Y591D 0.18 deleterious(0) probably_damaging(0.976) TCGA-BP-5010-01 1 144912241 144912241 C A PDE4DIP Missense_Mutation p.Q678H 0.12 deleterious(0.04) benign(0.059) TCGA-BP-5010-01 1 151740624 151740624 T G OAZ3 Missense_Mutation p.S87A 0.17 tolerated(0.46) benign(0.079) TCGA-BP-5010-01 1 156446973 156446973 C T MEF2D Missense_Mutation p.R229Q 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-BP-5010-01 1 179033138 179033138 G - FAM20B Frame_Shift_Del p.E218Rfs*43 0.20 TCGA-BP-5010-01 1 204006475 204006475 A C LINC00303 RNA 0.11 TCGA-BP-5010-01 1 21221941 21221941 G A EIF4G3 Silent p.L635L 0.11 TCGA-BP-5010-01 1 232651061 232651061 C A SIPA1L2 Nonsense_Mutation p.E9* 0.08 TCGA-BP-5010-01 1 33956856 33956856 C A ZSCAN20 Missense_Mutation p.T333N 0.11 deleterious(0) probably_damaging(0.979) TCGA-BP-5010-01 1 9801267 9801267 C T CLSTN1 Silent p.P468P 0.16 TCGA-BP-5010-01 20 18794452 18794452 A G SCP2D1 5'UTR 0.16 TCGA-BP-5010-01 20 50406800 50406800 A G SALL4 Missense_Mutation p.F741S 0.16 deleterious(0.01) benign(0.015) TCGA-BP-5010-01 21 30255320 30255320 G T N6AMT1 Missense_Mutation p.Q70K 0.20 benign(0.006) TCGA-BP-5010-01 21 33074125 33074131 AGCAGCA - SCAF4 Frame_Shift_Del p.F186Lfs*36 0.25 TCGA-BP-5010-01 21 41450747 41450747 C A DSCAM Missense_Mutation p.R1526S 0.12 deleterious(0.01) benign(0.392) TCGA-BP-5010-01 22 26422488 26422488 A G MYO18B Missense_Mutation p.H2183R 0.16 tolerated(1) benign(0) TCGA-BP-5010-01 22 45607978 45607978 C G KIAA0930 Missense_Mutation p.K30N 0.13 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-BP-5010-01 2 172604426 172604426 G C DYNC1I2 3'UTR 0.15 TCGA-BP-5010-01 2 191797463 191797463 T A GLS Intron 0.18 TCGA-BP-5010-01 2 24338472 24338472 A T PFN4 Missense_Mutation p.L124Q 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-BP-5010-01 2 61706022 61706022 T C XPO1 Missense_Mutation p.H1050R 0.25 tolerated(1) benign(0) TCGA-BP-5010-01 3 112357355 112357356 - T CCDC80 Frame_Shift_Ins p.N466Kfs*38 0.32 TCGA-BP-5010-01 3 32750281 32750281 T A CNOT10 Silent p.G193G 0.22 TCGA-BP-5010-01 3 38798548 38798548 G T SCN10A Silent p.R351R 0.26 TCGA-BP-5010-01 3 47129619 47129637 CAGGTAAGTTTCTGCTCCA G SETD2 In_Frame_Del p.L1748_C1754delinsS 0.17 TCGA-BP-5010-01 3 52273016 52273016 C T TWF2 Missense_Mutation p.G6D 0.15 deleterious(0) probably_damaging(0.999) TCGA-BP-5010-01 4 162306769 162306769 T A FSTL5 3'UTR 0.33 TCGA-BP-5010-01 4 169294885 169294885 T C DDX60L Missense_Mutation p.I1570V 0.03 tolerated(0.81) benign(0.002) TCGA-BP-5010-01 4 38698861 38698861 A G KLF3 Missense_Mutation p.R339G 0.25 deleterious(0.01) possibly_damaging(0.601) TCGA-BP-5010-01 4 55955623 55955623 C A KDR Missense_Mutation p.G1108W 0.14 deleterious(0) probably_damaging(1) TCGA-BP-5010-01 5 140580451 140580453 TAG - PCDHB11 In_Frame_Del p.S369del 0.23 TCGA-BP-5010-01 5 66481767 66481767 A C CD180 Missense_Mutation p.F57V 0.18 tolerated(0.85) benign(0) TCGA-BP-5010-01 5 68682089 68682090 TT - RAD17 Frame_Shift_Del p.F272Sfs*14 0.17 TCGA-BP-5010-01 5 74986334 74986356 TTTCTTCAGTAAAGTTCTCTGGT - POC5 Frame_Shift_Del p.Y276Cfs*26 0.23 TCGA-BP-5010-01 5 80511696 80511696 C A RASGRF2 Missense_Mutation p.T1119K 0.18 deleterious(0.01) possibly_damaging(0.717) TCGA-BP-5010-01 6 109774523 109774523 C G MICAL1 Missense_Mutation p.G172R 0.23 deleterious(0) probably_damaging(1) TCGA-BP-5010-01 6 117241586 117241586 C T RFX6 Silent p.S432S 0.22 TCGA-BP-5010-01 6 13621067 13621067 C G AL441883.1 Missense_Mutation p.A19P 0.26 unknown(0) TCGA-BP-5010-01 6 160328147 160328147 C A MAS1 Missense_Mutation p.L54I 0.20 tolerated(0.64) benign(0.383) TCGA-BP-5010-01 6 43252048 43252048 C A TTBK1 Missense_Mutation p.S1190R 0.29 benign(0.002) TCGA-BP-5010-01 6 46563727 46563727 A T CYP39A1 Silent p.I354I 0.21 TCGA-BP-5010-01 6 48035980 48035980 C A PTCHD4 Missense_Mutation p.V138L 0.16 tolerated(0.19) possibly_damaging(0.799) TCGA-BP-5010-01 6 53520057 53520057 T A KLHL31 Missense_Mutation p.K5M 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BP-5010-01 6 53520093 53520093 G A KLHL31 5'UTR 0.16 TCGA-BP-5010-01 6 7373333 7373333 C T CAGE1 Silent p.E573E 0.13 TCGA-BP-5010-01 6 75947673 75947673 C T COX7A2 Silent p.V107V 0.21 TCGA-BP-5010-01 7 102517966 102517966 T - FBXL13 Frame_Shift_Del p.N528Tfs*8 0.21 TCGA-BP-5010-01 7 135298932 135298932 C T NUP205 Missense_Mutation p.S1074F 0.19 deleterious(0.02) possibly_damaging(0.722) TCGA-BP-5010-01 7 48634311 48634311 G A ABCA13 Silent p.E4882E 0.18 TCGA-BP-5010-01 7 86394381 86394381 T A GRM3 5'UTR 0.15 TCGA-BP-5010-01 8 25327412 25327412 A G CDCA2 Missense_Mutation p.I246V 0.21 deleterious(0.01) benign(0.001) TCGA-BP-5010-01 8 52746175 52746175 C T PCMTD1 Missense_Mutation p.R162Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-BP-5010-01 9 103002449 103002449 C T INVS Silent p.T241T 0.21 TCGA-BP-5010-01 9 35736114 35736114 C T CREB3 Silent p.S227S 0.27 TCGA-BP-5010-01 X 123179198 123179198 G A STAG2 Missense_Mutation p.R216Q 0.35 deleterious(0) probably_damaging(0.983) TCGA-BP-5010-01 X 24197791 24197791 G A ZFX Missense_Mutation p.D184N 0.34 tolerated(0.36) probably_damaging(0.997) TCGA-BP-5168-01 10 100221509 100221509 T G HPSE2 Intron 0.14 TCGA-BP-5168-01 10 103827518 103827518 G T HPS6 Missense_Mutation p.D763Y 0.25 deleterious(0) possibly_damaging(0.858) TCGA-BP-5168-01 10 1066837 1066837 C G IDI2 Missense_Mutation p.G79A 0.32 tolerated(0.11) possibly_damaging(0.643) TCGA-BP-5168-01 10 71166878 71166878 G A TACR2 Silent p.T300T 0.29 TCGA-BP-5168-01 10 94297189 94297189 T A IDE Missense_Mutation p.I73F 0.27 deleterious(0.02) benign(0.078) TCGA-BP-5168-01 10 99213291 99213291 G T ZDHHC16 Missense_Mutation p.W187C 0.24 deleterious(0) probably_damaging(0.976) TCGA-BP-5168-01 10 99213292 99213292 C A ZDHHC16 Missense_Mutation p.L188I 0.24 tolerated(0.14) possibly_damaging(0.836) TCGA-BP-5168-01 11 1017614 1017614 G A MUC6 Silent p.T1729T 0.13 TCGA-BP-5168-01 11 118352713 118352713 G A KMT2A Silent p.P1306P 0.38 TCGA-BP-5168-01 11 4976107 4976107 A C OR51A2 Missense_Mutation p.N279K 0.44 tolerated(0.25) benign(0.371) TCGA-BP-5168-01 11 5274476 5274476 C A HBG2 3'UTR 0.30 TCGA-BP-5168-01 11 62557433 62557433 A G TMEM179B Missense_Mutation p.T192A 0.28 tolerated(0.42) benign(0.002) TCGA-BP-5168-01 11 710481 710481 G C EPS8L2 Missense_Mutation p.V54L 0.17 deleterious(0) probably_damaging(0.956) TCGA-BP-5168-01 11 76751055 76751055 C T B3GNT6 Missense_Mutation p.L154F 0.32 deleterious(0.01) probably_damaging(0.939) TCGA-BP-5168-01 12 10132016 10132016 T C CLEC12A Missense_Mutation p.L101P 0.30 deleterious(0) probably_damaging(0.992) TCGA-BP-5168-01 12 10132045 10132045 A T CLEC12A Missense_Mutation p.N111Y 0.29 deleterious(0.01) possibly_damaging(0.747) TCGA-BP-5168-01 12 102067221 102067221 A T MYBPC1 Missense_Mutation p.E870V 0.30 tolerated(0.41) possibly_damaging(0.574) TCGA-BP-5168-01 12 112167663 112167663 G T ACAD10 Nonsense_Mutation p.E464* 0.29 TCGA-BP-5168-01 12 113285641 113285641 G A RPH3A Missense_Mutation p.R75Q 0.28 deleterious(0) benign(0.396) TCGA-BP-5168-01 12 122826194 122826194 T G CLIP1 Silent p.L519L 0.25 TCGA-BP-5168-01 12 124798830 124798830 C T FAM101A Missense_Mutation p.T56I 0.36 deleterious(0.05) probably_damaging(0.999) TCGA-BP-5168-01 12 14650805 14650805 A - ATF7IP Frame_Shift_Del p.E1204Dfs*60 0.19 TCGA-BP-5168-01 12 31944927 31944927 G A H3F3C Silent p.T58T 0.33 TCGA-BP-5168-01 12 32908819 32908819 G A YARS2 5'UTR 0.25 TCGA-BP-5168-01 12 46322466 46322466 T A SCAF11 Missense_Mutation p.I340L 0.28 tolerated(0.3) benign(0.005) TCGA-BP-5168-01 12 49496928 49496928 A G LMBR1L Missense_Mutation p.Y193H 0.29 tolerated(0.13) probably_damaging(0.999) TCGA-BP-5168-01 12 56396036 56396036 A G SUOX Missense_Mutation p.R11G 0.24 tolerated_low_confidence(0.57) benign(0) TCGA-BP-5168-01 12 7086391 7086391 A T LPCAT3 Missense_Mutation p.F461I 0.31 tolerated(0.66) benign(0.004) TCGA-BP-5168-01 12 72956769 72956769 T A TRHDE Missense_Mutation p.F619Y 0.27 deleterious(0) benign(0.306) TCGA-BP-5168-01 13 110835582 110835582 G A COL4A1 Missense_Mutation p.P647S 0.22 benign(0.001) TCGA-BP-5168-01 13 113242269 113242269 G A TUBGCP3 Missense_Mutation p.P9L 0.25 deleterious(0.01) possibly_damaging(0.586) TCGA-BP-5168-01 13 23909182 23909182 G T SACS Missense_Mutation p.Q2945K 0.33 probably_damaging(0.949) TCGA-BP-5168-01 14 105843253 105843253 C G PACS2 Missense_Mutation p.P317R 0.27 deleterious(0) probably_damaging(0.999) TCGA-BP-5168-01 14 21944786 21944786 C T TOX4 5'Flank 0.24 TCGA-BP-5168-01 14 24459472 24459472 C T DHRS4L2 Silent p.D70D 0.32 TCGA-BP-5168-01 14 24740082 24740084 CAG - RABGGTA In_Frame_Del p.L25del 0.42 TCGA-BP-5168-01 14 52534720 52534720 G C NID2 Silent p.P130P 0.26 TCGA-BP-5168-01 15 43482264 43482264 A C CCNDBP1 Silent p.R115R 0.23 TCGA-BP-5168-01 15 52521378 52521378 A T MYO5C Silent p.T1053T 0.27 TCGA-BP-5168-01 15 63419762 63419762 C A LACTB Silent p.R276R 0.34 TCGA-BP-5168-01 16 16149977 16149977 G A ABCC1 Missense_Mutation p.R501Q 0.27 deleterious(0) probably_damaging(0.993) TCGA-BP-5168-01 16 27500985 27500986 - T GTF3C1 Frame_Shift_Ins p.Q1078Afs*25 0.25 TCGA-BP-5168-01 16 67912713 67912713 T C EDC4 Missense_Mutation p.Y420H 0.32 deleterious(0) probably_damaging(0.914) TCGA-BP-5168-01 17 1634217 1634217 A T WDR81 Missense_Mutation p.Y1315F 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-BP-5168-01 17 28599644 28599655 AGCCTAGAAACA - BLMH Splice_Site p.X321_splice 0.44 TCGA-BP-5168-01 17 30310087 30310088 - A SUZ12 Frame_Shift_Ins p.R331Kfs*9 0.25 TCGA-BP-5168-01 17 38285875 38285875 T A MSL1 Missense_Mutation p.V194E 0.33 deleterious(0) probably_damaging(0.973) TCGA-BP-5168-01 17 47656509 47656509 C - NXPH3 Frame_Shift_Del p.H203Tfs*121 0.31 TCGA-BP-5168-01 17 56499634 56499634 T C HSF5 3'UTR 0.26 TCGA-BP-5168-01 17 7835215 7835215 C T TRAPPC1 5'UTR 0.23 TCGA-BP-5168-01 17 80708644 80708644 T G FN3K 3'UTR 0.32 TCGA-BP-5168-01 19 13192531 13192531 C T NFIX Silent p.P372P 0.31 TCGA-BP-5168-01 19 17838751 17838751 C A MAP1S Missense_Mutation p.A853E 0.09 tolerated(0.75) benign(0.018) TCGA-BP-5168-01 19 22847963 22847963 A T ZNF492 Missense_Mutation p.I498F 0.28 deleterious(0.01) possibly_damaging(0.84) TCGA-BP-5168-01 19 49133100 49133100 G A SPHK2 3'UTR 0.27 TCGA-BP-5168-01 19 50512604 50512604 G C VRK3 Missense_Mutation p.P60A 0.31 tolerated(0.09) benign(0.254) TCGA-BP-5168-01 19 53740381 53740381 G C ZNF677 Missense_Mutation p.H533Q 0.27 deleterious(0) probably_damaging(0.966) TCGA-BP-5168-01 19 6754947 6754947 G A SH2D3A Silent p.P292P 0.07 TCGA-BP-5168-01 19 9270970 9270970 G T ZNF317 Missense_Mutation p.D217Y 0.05 deleterious(0) possibly_damaging(0.577) TCGA-BP-5168-01 19 9724746 9724746 G A ZNF561 Missense_Mutation p.S92L 0.26 tolerated(0.11) benign(0.212) TCGA-BP-5168-01 1 100613814 100613814 T - TRMT13 Frame_Shift_Del p.N394Kfs*34 0.22 TCGA-BP-5168-01 1 151138591 151138591 G A SCNM1 5'UTR 0.31 TCGA-BP-5168-01 1 174977836 174977836 A - CACYBP Frame_Shift_Del p.E177Rfs*15 0.22 TCGA-BP-5168-01 1 186151399 186151399 A T HMCN1 Missense_Mutation p.H5465L 0.25 benign(0) TCGA-BP-5168-01 1 203155750 203155750 A G CHI3L1 Translation_Start_Site p.M1? 0.26 deleterious(0) probably_damaging(0.94) TCGA-BP-5168-01 1 214830539 214830539 A T CENPF Missense_Mutation p.T2917S 0.03 benign(0.017) TCGA-BP-5168-01 1 222750908 222750908 C G TAF1A Missense_Mutation p.E161D 0.29 deleterious(0.01) probably_damaging(0.94) TCGA-BP-5168-01 1 228559759 228559759 T C OBSCN Silent p.L8051L 0.20 TCGA-BP-5168-01 1 24106410 24106410 C G PITHD1 Nonsense_Mutation p.S100* 0.25 TCGA-BP-5168-01 1 32842305 32842307 CTC T BSDC1 Frame_Shift_Del p.E255Sfs*13 0.23 TCGA-BP-5168-01 1 90048980 90048980 A G LRRC8B Silent p.V257V 0.32 TCGA-BP-5168-01 1 94017857 94017858 - TA FNBP1L Intron 0.19 TCGA-BP-5168-01 20 21494259 21494259 C G NKX2-2 Missense_Mutation p.D17H 0.28 deleterious(0) probably_damaging(0.999) TCGA-BP-5168-01 20 2775211 2775211 C T CPXM1 Silent p.V645V 0.25 TCGA-BP-5168-01 20 34219486 34219486 A G CPNE1 Silent p.D219D 0.38 TCGA-BP-5168-01 20 35832332 35832332 C G RPN2 Missense_Mutation p.A175G 0.06 tolerated(0.34) probably_damaging(0.999) TCGA-BP-5168-01 20 60962388 60962388 C A RPS21 5'UTR 0.33 TCGA-BP-5168-01 20 656174 656174 G A SCRT2 Silent p.T24T 0.43 TCGA-BP-5168-01 20 9510488 9510488 C A LAMP5 3'UTR 0.26 TCGA-BP-5168-01 21 34925507 34925507 G C SON Missense_Mutation p.E1324Q 0.28 benign(0.403) TCGA-BP-5168-01 21 37418054 37418054 A T SETD4 Missense_Mutation p.F184L 0.29 tolerated(0.28) benign(0.101) TCGA-BP-5168-01 22 20861886 20861886 G T MED15 5'Flank 0.42 TCGA-BP-5168-01 22 24121517 24121517 C - MMP11 Frame_Shift_Del p.P85Hfs*5 0.31 TCGA-BP-5168-01 2 10269379 10269379 C T RRM2 Missense_Mutation p.P406S 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BP-5168-01 2 150432970 150432991 ACATGTCTGTATTGCACACTCT - MMADHC Frame_Shift_Del p.E147Qfs*15 0.12 TCGA-BP-5168-01 2 207639092 207639092 C A FASTKD2 Silent p.L466L 0.29 TCGA-BP-5168-01 2 230910577 230910577 A - SLC16A14 Frame_Shift_Del p.F422Sfs*3 0.26 TCGA-BP-5168-01 2 232653302 232653325 TCAAGTAATCTCCTGGAGCAGTTT - COPS7B In_Frame_Del p.S8_F15del 0.26 TCGA-BP-5168-01 2 239353054 239353054 C T ASB1 Missense_Mutation p.T189I 0.37 deleterious(0.01) probably_damaging(0.927) TCGA-BP-5168-01 2 24535240 24535240 A G ITSN2 Silent p.L65L 0.29 TCGA-BP-5168-01 2 27320383 27320383 T C KHK Missense_Mutation p.S144P 0.24 tolerated(0.21) benign(0.001) TCGA-BP-5168-01 2 44065039 44065039 G C ABCG5 Missense_Mutation p.Q67E 0.28 tolerated(0.1) benign(0.111) TCGA-BP-5168-01 2 68546472 68546472 C A CNRIP1 Missense_Mutation p.G21C 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-BP-5168-01 2 97024901 97024901 G C NCAPH Missense_Mutation p.D443H 0.28 deleterious(0.01) probably_damaging(0.93) TCGA-BP-5168-01 3 110837735 110837735 T A PVRL3 Silent p.T245T 0.32 TCGA-BP-5168-01 3 113627861 113627861 A - GRAMD1C Frame_Shift_Del p.T283Lfs*6 0.22 TCGA-BP-5168-01 3 113858392 113858392 T A DRD3 Silent p.R226R 0.33 TCGA-BP-5168-01 3 155571512 155571512 G A SLC33A1 Missense_Mutation p.A92V 0.03 deleterious(0.04) benign(0.298) TCGA-BP-5168-01 3 169555371 169555371 A G LRRIQ4 Silent p.K545K 0.30 TCGA-BP-5168-01 3 182662880 182662880 T G DCUN1D1 3'UTR 0.27 TCGA-BP-5168-01 3 52623265 52623267 TCA CG PBRM1 Frame_Shift_Del p.K930Rfs*78 0.23 TCGA-BP-5168-01 3 85851226 85851226 A G CADM2 Missense_Mutation p.N33D 0.34 tolerated(1) benign(0.002) TCGA-BP-5168-01 4 106861265 106861265 G T NPNT Missense_Mutation p.C210F 0.07 deleterious(0) probably_damaging(1) TCGA-BP-5168-01 4 170913100 170913100 G T MFAP3L Missense_Mutation p.A220D 0.27 deleterious(0) probably_damaging(0.999) TCGA-BP-5168-01 4 39206807 39206807 T A WDR19 Missense_Mutation p.F213I 0.38 tolerated(0.16) benign(0) TCGA-BP-5168-01 4 68692994 68692994 C T TMPRSS11D Missense_Mutation p.A313T 0.27 deleterious(0) benign(0.225) TCGA-BP-5168-01 4 87679432 87679432 G A PTPN13 Nonsense_Mutation p.W1081* 0.21 TCGA-BP-5168-01 5 140596070 140596070 A G PCDHB13 Missense_Mutation p.N792S 0.17 tolerated_low_confidence(1) benign(0) TCGA-BP-5168-01 5 154191178 154191185 GTCTTGAA - LARP1 Frame_Shift_Del p.E945Pfs*8 0.41 TCGA-BP-5168-01 5 179193308 179193308 A T MAML1 Missense_Mutation p.T433S 0.16 tolerated(0.62) benign(0.003) TCGA-BP-5168-01 5 39202847 39202847 T C FYB Silent p.E82E 0.46 TCGA-BP-5168-01 5 41195891 41195891 T A C6 Intron 0.24 TCGA-BP-5168-01 5 54701366 54701366 T A SKIV2L2 Silent p.T865T 0.19 TCGA-BP-5168-01 5 94860289 94860289 C G TTC37 Missense_Mutation p.Q444H 0.17 tolerated(0.08) probably_damaging(0.943) TCGA-BP-5168-01 6 127901450 127901450 G A C6orf58 Silent p.A143A 0.24 TCGA-BP-5168-01 6 133065439 133065439 C T VNN2 Silent p.%3D 0.27 TCGA-BP-5168-01 6 152757208 152757208 G A SYNE1 Missense_Mutation p.A1393V 0.25 benign(0.156) TCGA-BP-5168-01 6 30569885 30569885 G A PPP1R10 Silent p.P847P 0.31 TCGA-BP-5168-01 6 7727745 7727745 G T BMP6 Missense_Mutation p.S186I 0.38 tolerated(0.14) possibly_damaging(0.541) TCGA-BP-5168-01 7 108205177 108205177 G T THAP5 Missense_Mutation p.H216N 0.29 tolerated(1) benign(0.01) TCGA-BP-5168-01 7 116538867 116538867 A G CAPZA2 Missense_Mutation p.K66R 0.25 tolerated(0.14) benign(0.016) TCGA-BP-5168-01 7 157985188 157985188 C T PTPRN2 Splice_Site p.X127_splice 0.22 TCGA-BP-5168-01 7 24738852 24738852 T C DFNA5 Silent p.V428V 0.25 TCGA-BP-5168-01 7 5104366 5104366 A G RBAK Missense_Mutation p.K427E 0.22 deleterious(0) probably_damaging(0.997) TCGA-BP-5168-01 7 90041973 90041973 T A CLDN12 5'UTR 0.24 TCGA-BP-5168-01 7 92132412 92132414 AAC - PEX1 In_Frame_Del p.V723del 0.36 TCGA-BP-5168-01 8 113421242 113421242 T C CSMD3 Silent p.V1805V 0.29 TCGA-BP-5168-01 8 120101991 120101991 G A COLEC10 Splice_Site p.X74_splice 0.19 TCGA-BP-5168-01 8 128753228 128753228 T G MYC 3'UTR 0.32 TCGA-BP-5168-01 8 142445230 142445230 G C PTP4A3 3'Flank 0.20 TCGA-BP-5168-01 8 144411529 144411529 G A TOP1MT Silent p.D117D 0.23 TCGA-BP-5168-01 8 144874929 144874929 G A SCRIB Missense_Mutation p.R1376C 0.19 probably_damaging(0.999) TCGA-BP-5168-01 8 27509086 27509086 G T SCARA3 Silent p.R56R 0.05 TCGA-BP-5168-01 8 3141831 3141831 C - CSMD1 Frame_Shift_Del p.D1330Tfs*16 0.24 TCGA-BP-5168-01 8 41800349 41800382 CGTTTTCTCCTTCCTCAGCCTCCTCTTCTTCCTC - KAT6A Frame_Shift_Del p.E789Kfs*10 0.20 TCGA-BP-5168-01 8 42036456 42036456 G C PLAT Missense_Mutation p.R497G 0.26 deleterious(0) probably_damaging(0.997) TCGA-BP-5168-01 8 71050557 71050557 T C NCOA2 Silent p.E1013E 0.35 TCGA-BP-5168-01 8 92083453 92083453 A C OTUD6B Missense_Mutation p.K87T 0.23 deleterious(0.04) benign(0.009) TCGA-BP-5168-01 8 94821184 94821184 G A TMEM67 Silent p.R852R 0.21 TCGA-BP-5168-01 9 114518734 114518734 C A C9orf84 Nonsense_Mutation p.E181* 0.31 TCGA-BP-5168-01 9 116171064 116171064 C T POLE3 3'UTR 0.33 TCGA-BP-5168-01 9 125391234 125391234 G A OR1B1 Missense_Mutation p.S194F 0.24 deleterious(0) probably_damaging(0.985) TCGA-BP-5168-01 9 130575544 130575544 C G FPGS Missense_Mutation p.N475K 0.34 tolerated(0.82) benign(0.007) TCGA-BP-5168-01 9 133914405 133914405 G A LAMC3 Silent p.R377R 0.29 TCGA-BP-5168-01 9 136290722 136290722 C T ADAMTS13 Missense_Mutation p.T135I 0.24 deleterious(0) probably_damaging(0.932) TCGA-BP-5168-01 9 32425989 32425989 G C ACO1 Missense_Mutation p.G448R 0.27 deleterious(0) probably_damaging(1) TCGA-BP-5168-01 X 11204520 11204520 A T ARHGAP6 Missense_Mutation p.L370H 0.61 deleterious(0) probably_damaging(0.999) TCGA-BP-5168-01 X 1422842 1422842 G C CSF2RA Missense_Mutation p.V359L 0.36 tolerated(0.35) benign(0.018) TCGA-BP-5168-01 X 41088595 41088595 C A USP9X Missense_Mutation p.A2384E 0.65 deleterious(0) probably_damaging(0.966) TCGA-BP-5169-01 10 12257826 12257826 G T CDC123 Missense_Mutation p.A109S 0.07 tolerated(0.63) benign(0.092) TCGA-BP-5169-01 10 96081712 96081714 GAG - PLCE1 In_Frame_Del p.E2135del 0.14 TCGA-BP-5169-01 11 125786947 125786947 C T DDX25 Missense_Mutation p.A280V 0.11 deleterious(0.02) possibly_damaging(0.655) TCGA-BP-5169-01 11 55703464 55703464 A C OR5I1 Missense_Mutation p.M138R 0.20 deleterious(0) probably_damaging(0.974) TCGA-BP-5169-01 11 58034733 58034733 C T OR10W1 Missense_Mutation p.V200M 0.15 tolerated(0.05) benign(0.301) TCGA-BP-5169-01 11 65273309 65273309 A G MALAT1 RNA 0.16 TCGA-BP-5169-01 11 70218604 70218604 T C PPFIA1 Silent p.I1021I 0.10 TCGA-BP-5169-01 11 85396828 85396828 C T CCDC89 Missense_Mutation p.G116S 0.12 tolerated(0.75) benign(0.002) TCGA-BP-5169-01 12 122492742 122492742 G C BCL7A Silent p.S157S 0.16 TCGA-BP-5169-01 12 40702937 40702937 C A LRRK2 Missense_Mutation p.H1407N 0.11 tolerated(0.08) probably_damaging(0.999) TCGA-BP-5169-01 12 6055316 6055316 C G ANO2 Splice_Site p.X4_splice 0.08 TCGA-BP-5169-01 12 6219564 6219564 C T VWF Missense_Mutation p.E170K 0.15 tolerated(0.08) probably_damaging(0.977) TCGA-BP-5169-01 12 96683053 96683053 G A CDK17 Missense_Mutation p.A337V 0.14 deleterious(0) probably_damaging(0.995) TCGA-BP-5169-01 13 39587067 39587067 G - PROSER1 Frame_Shift_Del p.S775Lfs*174 0.16 TCGA-BP-5169-01 13 41768535 41768535 C G KBTBD7 5'UTR 0.20 TCGA-BP-5169-01 15 49611861 49611861 T C GALK2 Missense_Mutation p.L343P 0.13 tolerated(0.05) probably_damaging(0.937) TCGA-BP-5169-01 16 16244586 16244586 G - ABCC6 Frame_Shift_Del p.R1418Gfs*46 0.14 TCGA-BP-5169-01 16 2140477 2140477 G T PKD1 Missense_Mutation p.L4085M 0.17 benign(0.363) TCGA-BP-5169-01 16 23079995 23079995 G T USP31 Missense_Mutation p.P1144H 0.10 deleterious_low_confidence(0.01) benign(0.332) TCGA-BP-5169-01 16 48173117 48173117 G A ABCC12 Missense_Mutation p.A263V 0.16 deleterious(0.05) probably_damaging(0.951) TCGA-BP-5169-01 16 55907817 55907817 G A CES5A Missense_Mutation p.S98F 0.21 deleterious(0) possibly_damaging(0.532) TCGA-BP-5169-01 16 75269312 75269312 C A BCAR1 Missense_Mutation p.E541D 0.31 tolerated(0.2) probably_damaging(0.993) TCGA-BP-5169-01 16 7568337 7568337 C A RBFOX1 Missense_Mutation p.H92Q 0.17 deleterious(0.03) possibly_damaging(0.773) TCGA-BP-5169-01 17 11757612 11757612 C A DNAH9 Missense_Mutation p.S3267Y 0.15 probably_damaging(0.967) TCGA-BP-5169-01 17 71344797 71344797 G A SDK2 Missense_Mutation p.L2036F 0.13 tolerated(0.06) possibly_damaging(0.888) TCGA-BP-5169-01 17 7291994 7291994 G T TNK1 Missense_Mutation p.D588Y 0.14 deleterious(0.01) probably_damaging(0.947) TCGA-BP-5169-01 17 74392798 74392798 G A UBE2O Silent p.S740S 0.14 TCGA-BP-5169-01 18 56202373 56202373 T C ALPK2 Silent p.K1682K 0.17 TCGA-BP-5169-01 18 61654513 61654513 A G SERPINB8 3'UTR 0.19 TCGA-BP-5169-01 19 38799931 38799931 T A YIF1B Missense_Mutation p.Y112F 0.13 tolerated(0.32) possibly_damaging(0.866) TCGA-BP-5169-01 19 47424189 47424189 C T ARHGAP35 Nonsense_Mutation p.Q753* 0.18 TCGA-BP-5169-01 19 9067792 9067792 T C MUC16 Missense_Mutation p.T6552A 0.13 unknown(0) TCGA-BP-5169-01 1 10363881 10363881 G T KIF1B Intron 0.16 TCGA-BP-5169-01 1 11855302 11855302 C A MTHFR Missense_Mutation p.R295L 0.14 deleterious(0.03) probably_damaging(0.922) TCGA-BP-5169-01 1 152084099 152084099 A G TCHH Silent p.L532L 0.05 TCGA-BP-5169-01 1 157485438 157485438 A - FCRL5 3'UTR 0.16 TCGA-BP-5169-01 1 161009657 161009657 T C USF1 3'UTR 0.12 TCGA-BP-5169-01 1 169697008 169697008 G A SELE Missense_Mutation p.P447L 0.15 deleterious(0.01) benign(0.315) TCGA-BP-5169-01 1 179041285 179041285 G - FAM20B 3'UTR 0.24 TCGA-BP-5169-01 1 22168731 22168731 C T HSPG2 Splice_Site p.X3018_splice 0.14 TCGA-BP-5169-01 1 247463763 247463763 C A ZNF496 3'UTR 0.20 TCGA-BP-5169-01 1 35857906 35857906 G C ZMYM4 Missense_Mutation p.S894T 0.13 tolerated(0.12) benign(0.044) TCGA-BP-5169-01 20 30365398 30365398 A C TPX2 Missense_Mutation p.E280A 0.08 deleterious(0.02) benign(0.109) TCGA-BP-5169-01 20 35177531 35177531 G A MYL9 Missense_Mutation p.R133H 0.08 deleterious(0.03) benign(0.08) TCGA-BP-5169-01 20 61341142 61341142 G A NTSR1 Missense_Mutation p.A195T 0.16 tolerated(0.08) benign(0.038) TCGA-BP-5169-01 21 39580489 39580489 G A DSCR10 RNA 0.18 TCGA-BP-5169-01 22 17589955 17589955 G A IL17RA Missense_Mutation p.G616S 0.60 tolerated(0.1) possibly_damaging(0.891) TCGA-BP-5169-01 22 45601731 45601731 C A KIAA0930 Silent p.L98L 0.18 TCGA-BP-5169-01 2 103120167 103120167 G A SLC9A4 Splice_Site p.X327_splice 0.13 TCGA-BP-5169-01 2 128252517 128252517 A C IWS1 Missense_Mutation p.L577W 0.14 deleterious(0) probably_damaging(0.987) TCGA-BP-5169-01 2 220033819 220033819 G A SLC23A3 Missense_Mutation p.L150F 0.16 tolerated(0.26) benign(0.033) TCGA-BP-5169-01 2 223066808 223066808 C A PAX3 Silent p.V425V 0.14 TCGA-BP-5169-01 2 234749963 234749963 G A HJURP Missense_Mutation p.P488L 0.12 tolerated(0.14) benign(0.431) TCGA-BP-5169-01 2 32689778 32689778 G T BIRC6 Missense_Mutation p.A1715S 0.21 benign(0.068) TCGA-BP-5169-01 3 10188200 10188200 C T VHL Missense_Mutation p.H115Y 0.20 deleterious(0) possibly_damaging(0.643) TCGA-BP-5169-01 3 132323956 132323956 C G ACAD11 Missense_Mutation p.C503S 0.09 deleterious(0.03) benign(0.247) TCGA-BP-5169-01 3 47125380 47125380 C A SETD2 Nonsense_Mutation p.E1964* 0.16 TCGA-BP-5169-01 3 49160288 49160288 G A LAMB2 Silent p.L1474L 0.09 TCGA-BP-5169-01 3 52595787 52595787 A C PBRM1 Nonsense_Mutation p.Y1376* 0.21 TCGA-BP-5169-01 5 157232998 157232998 G T CLINT1 Missense_Mutation p.T273N 0.17 tolerated(0.08) possibly_damaging(0.548) TCGA-BP-5169-01 6 106960877 106960877 G T AIM1 Missense_Mutation p.G221C 0.17 deleterious(0) probably_damaging(1) TCGA-BP-5169-01 7 100160277 100160277 C T AGFG2 Silent p.G353G 0.11 TCGA-BP-5169-01 7 148979329 148979329 C T ZNF783 Silent p.H512H 0.23 TCGA-BP-5169-01 7 150771996 150771996 G T SLC4A2 Intron 0.31 TCGA-BP-5169-01 7 65705680 65705680 G T TPST1 Missense_Mutation p.D90Y 0.15 deleterious(0) probably_damaging(1) TCGA-BP-5169-01 7 73112286 73112286 T - WBSCR22 3'UTR 0.13 TCGA-BP-5169-01 7 99668973 99668973 G C ZNF3 Silent p.T378T 0.10 TCGA-BP-5169-01 8 125989952 125989952 C G ZNF572 Missense_Mutation p.A481G 0.24 deleterious(0) possibly_damaging(0.534) TCGA-BP-5169-01 8 96070061 96070061 A - NDUFAF6 Frame_Shift_Del p.I301Ffs*40 0.14 TCGA-BP-5169-01 X 133941717 133941717 C A FAM122C Missense_Mutation p.A30D 0.28 tolerated(0.05) benign(0.137) TCGA-BP-5169-01 X 51488138 51488138 T A GSPT2 Silent p.V472V 0.38 TCGA-BP-5169-01 X 53228213 53228213 C A KDM5C Missense_Mutation p.C730F 0.29 deleterious(0) possibly_damaging(0.853) TCGA-BP-5170-01 10 102749574 102749574 C T C10orf2 Missense_Mutation p.H473Y 0.22 tolerated(0.07) benign(0.001) TCGA-BP-5170-01 11 117265695 117265695 C T CEP164 Silent p.A940A 0.28 TCGA-BP-5170-01 11 118372561 118372568 TGCCTTCT A KMT2A Frame_Shift_Del p.L2165* 0.13 TCGA-BP-5170-01 11 63357820 63357820 C T PLA2G16 Missense_Mutation p.A47T 0.17 tolerated(0.08) benign(0.011) TCGA-BP-5170-01 12 318976 318976 G C SLC6A12 Silent p.V59V 0.19 TCGA-BP-5170-01 13 25008976 25008976 G T PARP4 Missense_Mutation p.P1435T 0.18 deleterious(0.04) benign(0.084) TCGA-BP-5170-01 14 78217740 78217740 A G SNW1 Silent p.N84N 0.26 TCGA-BP-5170-01 16 2012906 2012906 A T RPS2 Missense_Mutation p.F127Y 0.26 deleterious(0.03) possibly_damaging(0.592) TCGA-BP-5170-01 16 22563729 22563729 G C RP11-368J21.3 RNA 0.19 TCGA-BP-5170-01 16 82182151 82182151 A G MPHOSPH6 3'UTR 0.27 TCGA-BP-5170-01 17 41931245 41931245 G T CD300LG Missense_Mutation p.L184F 0.26 tolerated(1) benign(0) TCGA-BP-5170-01 17 41931246 41931246 C A CD300LG Missense_Mutation p.P185T 0.25 tolerated(1) benign(0) TCGA-BP-5170-01 17 4995604 4995604 A C ZFP3 Missense_Mutation p.I269L 0.21 tolerated(0.16) possibly_damaging(0.749) TCGA-BP-5170-01 17 57292221 57292225 CCCTT - SMG8 Frame_Shift_Del p.L946Tfs*2 0.25 TCGA-BP-5170-01 17 7147450 7147450 G T CTDNEP1 3'UTR 0.13 TCGA-BP-5170-01 18 6983136 6983136 C A LAMA1 Missense_Mutation p.A1920S 0.19 deleterious(0.01) possibly_damaging(0.78) TCGA-BP-5170-01 19 38853135 38853135 C A CATSPERG Missense_Mutation p.F759L 0.20 deleterious(0.01) benign(0.294) TCGA-BP-5170-01 19 43441318 43441318 C T PSG7 5'UTR 0.12 TCGA-BP-5170-01 19 53209367 53209367 C A ZNF611 Missense_Mutation p.R314L 0.25 tolerated(0.06) benign(0.087) TCGA-BP-5170-01 1 156697247 156697247 C T ISG20L2 Silent p.T66T 0.24 TCGA-BP-5170-01 1 167887490 167887490 A T MPC2 3'UTR 0.28 TCGA-BP-5170-01 1 205589605 205589605 T C ELK4 Missense_Mutation p.K190R 0.05 tolerated(0.49) benign(0.044) TCGA-BP-5170-01 1 36230187 36230187 T A CLSPN Missense_Mutation p.N88Y 0.23 deleterious(0.02) possibly_damaging(0.648) TCGA-BP-5170-01 1 46646810 46646810 A G TSPAN1 Missense_Mutation p.M11V 0.15 deleterious(0) possibly_damaging(0.895) TCGA-BP-5170-01 1 55566554 55566554 C T USP24 Missense_Mutation p.M1743I 0.31 deleterious(0.04) possibly_damaging(0.525) TCGA-BP-5170-01 1 67845752 67845761 CTGACAGCTG - IL12RB2 Frame_Shift_Del p.T602Vfs*50 0.34 TCGA-BP-5170-01 1 70493872 70493872 C T LRRC7 Nonsense_Mutation p.R567* 0.04 TCGA-BP-5170-01 1 94953300 94953300 T C ABCD3 Silent p.L340L 0.23 TCGA-BP-5170-01 2 109384150 109384150 A G RANBP2 Silent p.R2385R 0.26 TCGA-BP-5170-01 2 179185050 179185050 C T OSBPL6 Intron 0.27 TCGA-BP-5170-01 2 21225774 21225774 C T APOB Missense_Mutation p.G4174S 0.24 benign(0.001) TCGA-BP-5170-01 2 224463043 224463043 C A SCG2 Missense_Mutation p.A320S 0.22 tolerated(0.62) benign(0.409) TCGA-BP-5170-01 3 10188190 10188196 CCCGATA - VHL Splice_Site p.X114_splice 0.28 TCGA-BP-5170-01 3 130454821 130454821 T C PIK3R4 Silent p.T253T 0.28 TCGA-BP-5170-01 3 169548374 169548374 A G LRRIQ4 Missense_Mutation p.H430R 0.04 deleterious(0.02) possibly_damaging(0.875) TCGA-BP-5170-01 3 52668655 52668655 G A PBRM1 Nonsense_Mutation p.Q422* 0.23 TCGA-BP-5170-01 3 53844188 53844188 C A CACNA1D Missense_Mutation p.L2039M 0.16 tolerated_low_confidence(0.12) benign(0.048) TCGA-BP-5170-01 4 183836682 183836682 C T DCTD Missense_Mutation p.E25K 0.24 deleterious(0.04) benign(0.022) TCGA-BP-5170-01 4 26741524 26741524 T C TBC1D19 Silent p.L386L 0.26 TCGA-BP-5170-01 5 120021872 120021872 G T PRR16 Missense_Mutation p.R105M 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BP-5170-01 5 149792311 149792311 A T CD74 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) benign(0.002) TCGA-BP-5170-01 5 158603687 158603687 A G RNF145 Silent p.L222L 0.20 TCGA-BP-5170-01 5 176332369 176332369 A G UIMC1 Silent p.L692L 0.16 TCGA-BP-5170-01 6 132643865 132643865 T C MOXD1 Missense_Mutation p.N420D 0.22 tolerated(0.12) probably_damaging(0.997) TCGA-BP-5170-01 6 7231393 7231393 T A RREB1 Missense_Mutation p.S1021T 0.20 tolerated(0.2) possibly_damaging(0.543) TCGA-BP-5170-01 7 114282567 114282567 C T FOXP2 Missense_Mutation p.T318I 0.40 deleterious(0) unknown(0) TCGA-BP-5170-01 7 142637748 142637748 C A C7orf34 3'UTR 0.07 TCGA-BP-5170-01 7 23809352 23809352 A - STK31 Frame_Shift_Del p.E565Sfs*4 0.19 TCGA-BP-5170-01 7 65223026 65223026 C G SNORA22 3'Flank 0.10 TCGA-BP-5170-01 7 92252376 92252376 A G CDK6 Silent p.D224D 0.14 TCGA-BP-5170-01 8 104438314 104438314 A G DCAF13 Missense_Mutation p.K289E 0.20 tolerated(0.11) benign(0.034) TCGA-BP-5170-01 8 38899622 38899622 T A ADAM9 Missense_Mutation p.C430S 0.22 deleterious(0) probably_damaging(1) TCGA-BP-5170-01 9 102822388 102822388 T - ERP44 Frame_Shift_Del p.I42Ffs*2 0.30 TCGA-BP-5170-01 X 30578381 30578381 T C CXorf21 Missense_Mutation p.K31R 0.46 tolerated(0.4) benign(0.003) TCGA-BP-5173-01 10 102719193 102719193 C A FAM178A Missense_Mutation p.D1142E 0.11 deleterious(0) benign(0.392) TCGA-BP-5173-01 10 131761928 131761928 G A EBF3 Silent p.G35G 0.33 TCGA-BP-5173-01 10 445051 445051 T A DIP2C Nonsense_Mutation p.K420* 0.15 TCGA-BP-5173-01 10 50947858 50947858 C T OGDHL Missense_Mutation p.S723N 0.20 tolerated(0.66) benign(0.009) TCGA-BP-5173-01 10 98715214 98715214 A G LCOR Silent p.V279V 0.21 TCGA-BP-5173-01 11 108206572 108206572 G C ATM Missense_Mutation p.G2718R 0.47 deleterious(0) probably_damaging(0.997) TCGA-BP-5173-01 11 111959648 111959648 T A SDHD Missense_Mutation p.L76H 0.41 deleterious(0) probably_damaging(0.995) TCGA-BP-5173-01 11 123894277 123894277 G A OR10G9 Silent p.L186L 0.17 TCGA-BP-5173-01 11 123988558 123988558 A G VWA5A Silent p.V74V 0.27 TCGA-BP-5173-01 11 66472251 66472251 C T SPTBN2 Silent p.R832R 0.20 TCGA-BP-5173-01 11 85374911 85374911 A C CREBZF Missense_Mutation p.S337A 0.19 deleterious(0.01) probably_damaging(0.952) TCGA-BP-5173-01 12 109967774 109967774 T A UBE3B Missense_Mutation p.F903I 0.29 deleterious(0) probably_damaging(0.99) TCGA-BP-5173-01 12 75737689 75737689 T G GLIPR1L1 Missense_Mutation p.C131G 0.26 deleterious(0) probably_damaging(0.999) TCGA-BP-5173-01 12 86373140 86373140 C T MGAT4C Missense_Mutation p.C455Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-BP-5173-01 14 20502565 20502565 A G OR4K13 Missense_Mutation p.M118T 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-BP-5173-01 15 100943022 100943022 C G CERS3 Missense_Mutation p.E350Q 0.33 tolerated(0.1) benign(0.255) TCGA-BP-5173-01 15 44060741 44060741 G A PDIA3 Silent p.L361L 0.33 TCGA-BP-5173-01 15 45706846 45706846 T C SPATA5L1 Silent p.Y504Y 0.45 TCGA-BP-5173-01 15 56032778 56032778 G A PRTG Missense_Mutation p.P67S 0.17 deleterious(0.04) possibly_damaging(0.888) TCGA-BP-5173-01 15 69561171 69561171 C G GLCE Missense_Mutation p.S481C 0.15 deleterious(0) probably_damaging(0.963) TCGA-BP-5173-01 16 71570904 71570904 C A CHST4 Silent p.V108V 0.12 TCGA-BP-5173-01 16 79633710 79633710 A G MAF Silent p.F30F 0.35 TCGA-BP-5173-01 16 84270517 84270517 C T KCNG4 Missense_Mutation p.R192H 0.11 tolerated(0.12) benign(0.001) TCGA-BP-5173-01 17 2996190 2996190 A G OR1D2 Missense_Mutation p.M34T 0.12 deleterious(0.01) probably_damaging(0.937) TCGA-BP-5173-01 17 36997521 36997521 G A C17orf98 Missense_Mutation p.P41L 0.29 deleterious(0) probably_damaging(0.999) TCGA-BP-5173-01 17 42232723 42232723 T A C17orf53 Missense_Mutation p.Y573N 0.24 deleterious(0.03) benign(0.178) TCGA-BP-5173-01 17 47388778 47388778 G T ZNF652 Missense_Mutation p.S402Y 0.29 deleterious(0.01) possibly_damaging(0.905) TCGA-BP-5173-01 17 56395795 56395795 C T BZRAP1 Missense_Mutation p.G573D 0.19 deleterious(0.02) possibly_damaging(0.757) TCGA-BP-5173-01 17 56395796 56395796 C T BZRAP1 Missense_Mutation p.G573S 0.20 tolerated(0.09) benign(0.153) TCGA-BP-5173-01 17 71197742 71197742 T C COG1 Silent p.I592I 0.33 TCGA-BP-5173-01 18 214641 214641 A C THOC1 Missense_Mutation p.N653K 0.39 tolerated_low_confidence(0.21) benign(0.037) TCGA-BP-5173-01 18 47463681 47463681 G A MYO5B Silent p.S613S 0.10 TCGA-BP-5173-01 18 61154236 61154236 G A SERPINB5 Missense_Mutation p.D76N 0.37 deleterious(0.04) probably_damaging(0.916) TCGA-BP-5173-01 19 17487791 17487791 G T PLVAP Missense_Mutation p.L103M 0.25 tolerated(0.06) possibly_damaging(0.544) TCGA-BP-5173-01 19 18376414 18376414 G C KIAA1683 Missense_Mutation p.H646D 0.15 tolerated(0.06) benign(0.012) TCGA-BP-5173-01 19 32968514 32968514 A G DPY19L3 Missense_Mutation p.N595S 0.11 tolerated(0.67) probably_damaging(1) TCGA-BP-5173-01 19 53958116 53958116 T A ZNF761 RNA 0.38 TCGA-BP-5173-01 19 5749189 5749191 ATC - CATSPERD In_Frame_Del p.I328del 0.17 TCGA-BP-5173-01 19 9578114 9578114 A C ZNF560 Silent p.L503L 0.39 TCGA-BP-5173-01 1 114483183 114483183 C A HIPK1 Missense_Mutation p.H60N 0.52 tolerated(0.32) benign(0.01) TCGA-BP-5173-01 1 151665946 151665946 A G SNX27 Missense_Mutation p.K522R 0.31 deleterious(0.03) probably_damaging(0.991) TCGA-BP-5173-01 1 157811476 157811476 A G CD5L Missense_Mutation p.S6P 0.32 tolerated(0.27) benign(0.271) TCGA-BP-5173-01 1 162749936 162749936 C T DDR2 Missense_Mutation p.S823F 0.11 deleterious(0.02) possibly_damaging(0.464) TCGA-BP-5173-01 1 169811586 169811586 T A C1orf112 Missense_Mutation p.V585E 0.32 deleterious(0) possibly_damaging(0.498) TCGA-BP-5173-01 1 186147782 186147782 A T HMCN1 Missense_Mutation p.H5393L 0.17 possibly_damaging(0.84) TCGA-BP-5173-01 1 193149452 193149452 C - B3GALT2 Frame_Shift_Del p.G414Afs*30 0.23 TCGA-BP-5173-01 1 203743901 203743901 A G LAX1 3'UTR 0.36 TCGA-BP-5173-01 1 221912420 221912420 C T DUSP10 Missense_Mutation p.D223N 0.37 tolerated(0.12) benign(0.022) TCGA-BP-5173-01 1 234565028 234565028 T A TARBP1 Missense_Mutation p.M972L 0.21 tolerated(1) benign(0.001) TCGA-BP-5173-01 1 84864297 84864297 T C DNASE2B Missense_Mutation p.L17P 0.46 deleterious(0) possibly_damaging(0.879) TCGA-BP-5173-01 22 35783139 35783139 G T HMOX1 Missense_Mutation p.E202D 0.24 deleterious(0) probably_damaging(0.997) TCGA-BP-5173-01 22 45938163 45938163 G A FBLN1 Missense_Mutation p.D399N 0.35 deleterious(0) possibly_damaging(0.821) TCGA-BP-5173-01 2 132905754 132905754 T C ANKRD30BL 3'UTR 0.22 TCGA-BP-5173-01 2 132905757 132905757 C A ANKRD30BL 3'UTR 0.19 TCGA-BP-5173-01 2 170506866 170506866 T G CCDC173 Missense_Mutation p.K375N 0.12 deleterious(0.03) benign(0.202) TCGA-BP-5173-01 2 179485254 179485254 G T TTN Missense_Mutation p.L15332M 0.14 TCGA-BP-5173-01 2 185801482 185801482 T G ZNF804A Missense_Mutation p.I453M 0.52 deleterious(0) benign(0.426) TCGA-BP-5173-01 2 192550402 192550402 A C NABP1 Missense_Mutation p.I175L 0.12 tolerated(0.77) benign(0.006) TCGA-BP-5173-01 2 20101521 20101521 G A TTC32 Missense_Mutation p.S32F 0.25 deleterious(0) probably_damaging(0.992) TCGA-BP-5173-01 2 204002984 204002984 A T NBEAL1 Silent p.I1526I 0.18 TCGA-BP-5173-01 2 228886626 228886626 G T SPHKAP Missense_Mutation p.N166K 0.10 tolerated(0.06) probably_damaging(0.97) TCGA-BP-5173-01 2 230650536 230650536 C A TRIP12 Silent p.A1602A 0.51 TCGA-BP-5173-01 2 72406461 72406461 C G EXOC6B 3'UTR 0.19 TCGA-BP-5173-01 4 119947951 119947951 G C SYNPO2 Missense_Mutation p.A143P 0.20 tolerated(0.22) benign(0.012) TCGA-BP-5173-01 4 119947953 119947953 T A SYNPO2 Silent p.A143A 0.23 TCGA-BP-5173-01 4 120182905 120182905 T C USP53 Silent p.N286N 0.21 TCGA-BP-5173-01 4 148555356 148555356 T G TMEM184C Missense_Mutation p.F363C 0.32 deleterious(0.03) possibly_damaging(0.88) TCGA-BP-5173-01 4 174219381 174219381 C A GALNT7 Missense_Mutation p.L361I 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-BP-5173-01 4 47527622 47527622 A T ATP10D Missense_Mutation p.S247C 0.17 deleterious(0) possibly_damaging(0.886) TCGA-BP-5173-01 4 76956490 76956490 G T CXCL11 Missense_Mutation p.P23T 0.33 tolerated(0.11) benign(0.066) TCGA-BP-5173-01 4 99064290 99064290 C A STPG2 Silent p.R4R 0.17 TCGA-BP-5173-01 5 127782277 127782277 G A FBN2 Silent p.I283I 0.32 TCGA-BP-5173-01 5 129520380 129520380 G T CHSY3 Silent p.R515R 0.12 TCGA-BP-5173-01 5 137503709 137503709 A T BRD8 Missense_Mutation p.L234Q 0.26 tolerated(0.1) probably_damaging(0.969) TCGA-BP-5173-01 5 140559268 140559268 G T PCDHB8 Silent p.L551L 0.20 TCGA-BP-5173-01 5 89971958 89971958 T A GPR98 Missense_Mutation p.I1792N 0.46 probably_damaging(0.986) TCGA-BP-5173-01 5 90678672 90678673 - T ARRDC3 Frame_Shift_Ins p.E80Rfs*6 0.09 TCGA-BP-5173-01 6 100368762 100368762 A T MCHR2 3'UTR 0.13 TCGA-BP-5173-01 6 143095055 143095066 TCTGAATGTATT - HIVEP2 In_Frame_Del p.E270_S273del 0.09 TCGA-BP-5173-01 6 161152841 161152841 A G PLG Silent p.P501P 0.30 TCGA-BP-5173-01 6 43571729 43571729 C A POLH Missense_Mutation p.H289N 0.40 deleterious(0.03) possibly_damaging(0.563) TCGA-BP-5173-01 6 90604514 90604514 G A GJA10 Silent p.R109R 0.21 TCGA-BP-5173-01 7 100680818 100680818 G A MUC17 Missense_Mutation p.E2041K 0.13 unknown(0) TCGA-BP-5173-01 7 122757654 122757654 G A SLC13A1 Silent p.A507A 0.50 TCGA-BP-5173-01 7 139415959 139415959 T C HIPK2 Missense_Mutation p.K292R 0.14 deleterious(0) probably_damaging(0.951) TCGA-BP-5173-01 7 146829477 146829477 T C CNTNAP2 Silent p.G408G 0.39 TCGA-BP-5173-01 7 14758285 14758285 G T DGKB Silent p.I116I 0.09 TCGA-BP-5173-01 7 14758286 14758286 A T DGKB Missense_Mutation p.I116N 0.09 tolerated(0.5) benign(0.042) TCGA-BP-5173-01 7 51094361 51094361 G A COBL Missense_Mutation p.T1129M 0.25 deleterious(0.02) benign(0.102) TCGA-BP-5173-01 8 101153010 101153010 C T FBXO43 Missense_Mutation p.G491D 0.06 deleterious(0) probably_damaging(1) TCGA-BP-5173-01 9 113196780 113196780 G C SVEP1 Missense_Mutation p.P1632R 0.29 possibly_damaging(0.795) TCGA-BP-5173-01 9 136522203 136522203 A G DBH Missense_Mutation p.E525G 0.14 tolerated(0.14) benign(0.005) TCGA-BP-5173-01 9 69113733 69113733 G T RP11-87H9.3 5'Flank 0.23 TCGA-BP-5173-01 9 90321652 90321652 C T DAPK1 Silent p.V1222V 0.14 TCGA-BP-5173-01 X 154157680 154157680 A T F8 Missense_Mutation p.L1462H 0.45 tolerated(0.14) possibly_damaging(0.765) TCGA-BP-5173-01 X 23803813 23803813 G A SAT1 Missense_Mutation p.R119K 0.42 tolerated(1) benign(0) TCGA-BP-5173-01 X 23803814 23803814 G A SAT1 Silent p.R119R 0.41 TCGA-BP-5173-01 X 48674583 48674583 T C HDAC6 Missense_Mutation p.I510T 0.39 deleterious(0.01) probably_damaging(1) TCGA-BP-5173-01 X 70756094 70756094 G T OGT Missense_Mutation p.G35V 0.58 deleterious(0.02) possibly_damaging(0.895) TCGA-BP-5174-01 10 15879243 15879243 A G FAM188A Missense_Mutation p.F179S 0.23 deleterious(0.01) benign(0.044) TCGA-BP-5174-01 11 12243299 12243299 G A MICAL2 Missense_Mutation p.A439T 0.27 deleterious(0) probably_damaging(0.998) TCGA-BP-5174-01 11 33566837 33566837 C T KIAA1549L Missense_Mutation p.P803S 0.25 deleterious(0.01) possibly_damaging(0.521) TCGA-BP-5174-01 12 96640767 96640767 C A ELK3 Missense_Mutation p.S86Y 0.18 deleterious(0) probably_damaging(0.993) TCGA-BP-5174-01 14 23894488 23894488 C A MYH7 Intron 0.31 TCGA-BP-5174-01 14 23894489 23894489 A T MYH7 Splice_Site p.X808_splice 0.33 TCGA-BP-5174-01 16 20489924 20489925 - C ACSM2A Frame_Shift_Ins p.G405Rfs*48 0.26 TCGA-BP-5174-01 16 31202907 31202907 A G FUS 3'UTR 0.15 TCGA-BP-5174-01 16 50344758 50344758 T - ADCY7 Frame_Shift_Del p.L774Rfs*22 0.15 TCGA-BP-5174-01 16 81208318 81208318 C T PKD1L2 Missense_Mutation p.V185M 0.25 deleterious_low_confidence(0.01) benign(0.011) TCGA-BP-5174-01 17 40723622 40723622 C T MLX 3'UTR 0.27 TCGA-BP-5174-01 17 42397274 42397274 C A SLC25A39 3'UTR 0.21 TCGA-BP-5174-01 19 14991515 14991521 TAAGAGC - OR7A17 Frame_Shift_Del p.C216Sfs*4 0.22 TCGA-BP-5174-01 19 55086976 55086976 C T LILRA2 Silent p.S303S 0.23 TCGA-BP-5174-01 1 100571393 100571393 G T SASS6 Missense_Mutation p.P492H 0.33 tolerated(0.23) benign(0.005) TCGA-BP-5174-01 1 152287246 152287246 G T FLG Intron 0.19 TCGA-BP-5174-01 1 17303611 17303611 G C MFAP2 Missense_Mutation p.D40E 0.26 tolerated_low_confidence(0.29) benign(0.035) TCGA-BP-5174-01 1 231829671 231829671 T A DISC1 Missense_Mutation p.F56Y 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-BP-5174-01 1 24666207 24666207 C G GRHL3 Silent p.A334A 0.18 TCGA-BP-5174-01 1 77627328 77627328 G T PIGK Missense_Mutation p.P218H 0.27 deleterious(0) probably_damaging(1) TCGA-BP-5174-01 20 37214721 37214721 C A ADIG Missense_Mutation p.S58R 0.17 tolerated(0.06) benign(0.323) TCGA-BP-5174-01 20 54941313 54941314 - T FAM210B Frame_Shift_Ins p.K186* 0.26 TCGA-BP-5174-01 21 41385099 41385099 G A DSCAM Silent p.A1967A 0.19 TCGA-BP-5174-01 2 148693265 148693265 A T ORC4 Silent p.A375A 0.19 TCGA-BP-5174-01 2 183601013 183601013 C T DNAJC10 Missense_Mutation p.T296I 0.16 tolerated(0.09) benign(0.004) TCGA-BP-5174-01 2 234638593 234638599 TCTTCAT - UGT1A3 Frame_Shift_Del p.F275Gfs*90 0.19 TCGA-BP-5174-01 2 95537442 95537442 C A TEKT4 Missense_Mutation p.L40M 0.20 tolerated(0.07) possibly_damaging(0.809) TCGA-BP-5174-01 3 10188204 10188220 TTTGGCTCTTCAGAGAT A VHL Frame_Shift_Del p.L116Qfs*38 0.28 TCGA-BP-5174-01 3 108572551 108572551 C A TRAT1 Missense_Mutation p.H130N 0.33 tolerated(1) benign(0.002) TCGA-BP-5174-01 3 154022915 154022915 T A DHX36 Silent p.T312T 0.28 TCGA-BP-5174-01 4 104512654 104512654 G T TACR3 Missense_Mutation p.L359M 0.21 tolerated(0.11) probably_damaging(0.981) TCGA-BP-5174-01 4 126328192 126328192 C T FAT4 Missense_Mutation p.S1822F 0.27 probably_damaging(0.996) TCGA-BP-5174-01 4 8217896 8217896 G T SH3TC1 Missense_Mutation p.L180F 0.34 tolerated(0.53) benign(0.004) TCGA-BP-5174-01 4 98902354 98902354 C T STPG2 Missense_Mutation p.S243N 0.29 tolerated(0.07) benign(0.016) TCGA-BP-5174-01 5 139947164 139947164 G T SLC35A4 Missense_Mutation p.R137L 0.34 deleterious(0.02) possibly_damaging(0.634) TCGA-BP-5174-01 6 110763477 110763477 C T SLC22A16 Missense_Mutation p.G385S 0.27 deleterious(0.02) probably_damaging(0.964) TCGA-BP-5174-01 6 43613007 43613007 T C RSPH9 Missense_Mutation p.Y58H 0.29 tolerated(0.2) probably_damaging(0.934) TCGA-BP-5174-01 6 86258029 86258029 A G SNX14 Missense_Mutation p.L286P 0.20 deleterious(0) probably_damaging(0.974) TCGA-BP-5174-01 7 112412960 112412960 A - TMEM168 Frame_Shift_Del p.F474Lfs*8 0.22 TCGA-BP-5174-01 7 127979814 127979814 G A RBM28 Silent p.V50V 0.30 TCGA-BP-5174-01 7 134261744 134261744 T G AKR1B15 Missense_Mutation p.N285K 0.29 deleterious(0.04) benign(0.153) TCGA-BP-5174-01 7 157475557 157475557 C G PTPRN2 Missense_Mutation p.V621L 0.27 tolerated(0.56) benign(0.004) TCGA-BP-5174-01 7 47869026 47869026 T G PKD1L1 Missense_Mutation p.E2244D 0.26 tolerated(0.09) benign(0.147) TCGA-BP-5174-01 8 105456595 105456595 A G DPYS Missense_Mutation p.V225A 0.27 tolerated(0.05) possibly_damaging(0.529) TCGA-BP-5174-01 9 72131197 72131197 G A APBA1 Silent p.R310R 0.31 TCGA-BP-5174-01 9 72897437 72897437 A C SMC5 Missense_Mutation p.T307P 0.24 tolerated(0.22) benign(0.027) TCGA-BP-5175-01 10 135012532 135012532 G A KNDC1 Silent p.P840P 0.29 TCGA-BP-5175-01 10 46968694 46968694 G A SYT15 Missense_Mutation p.P81L 0.14 deleterious(0.01) possibly_damaging(0.839) TCGA-BP-5175-01 11 1078457 1078457 G A MUC2 Missense_Mutation p.R222H 0.35 probably_damaging(1) TCGA-BP-5175-01 11 32417899 32417899 T A WT1 Missense_Mutation p.T385S 0.33 tolerated_low_confidence(0.41) benign(0.053) TCGA-BP-5175-01 11 45925587 45925587 C A MAPK8IP1 Missense_Mutation p.P514H 0.17 deleterious(0) probably_damaging(1) TCGA-BP-5175-01 11 57099909 57099909 T G SSRP1 Missense_Mutation p.I274L 0.33 deleterious(0.01) possibly_damaging(0.68) TCGA-BP-5175-01 11 60561455 60561455 G A MS4A10 Missense_Mutation p.C124Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-BP-5175-01 11 62782211 62782211 G - SLC22A8 Frame_Shift_Del p.L74Sfs*36 0.20 TCGA-BP-5175-01 11 65402821 65402821 C T PCNXL3 Missense_Mutation p.P1696S 0.35 deleterious(0.01) probably_damaging(0.934) TCGA-BP-5175-01 12 55725604 55725604 G T OR6C3 Silent p.L40L 0.10 TCGA-BP-5175-01 12 8325234 8325234 G T ZNF705A Splice_Site p.X4_splice 0.04 TCGA-BP-5175-01 14 21623848 21623848 G A OR5AU1 Missense_Mutation p.L113F 0.24 tolerated(1) benign(0.002) TCGA-BP-5175-01 14 23894068 23894068 T C MYH7 Silent p.L863L 0.10 TCGA-BP-5175-01 14 52782081 52782081 C T PTGER2 Missense_Mutation p.T272I 0.22 tolerated(0.55) benign(0.401) TCGA-BP-5175-01 15 59417125 59417125 T C CCNB2 3'UTR 0.24 TCGA-BP-5175-01 16 11217730 11217730 C G CLEC16A Silent p.R800R 0.17 TCGA-BP-5175-01 16 50583388 50583388 C T NKD1 Silent p.I38I 0.20 TCGA-BP-5175-01 17 35946642 35946642 C T SYNRG Missense_Mutation p.G86R 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BP-5175-01 17 48148756 48148756 T C ITGA3 Missense_Mutation p.M278T 0.08 tolerated(0.59) benign(0.001) TCGA-BP-5175-01 17 64880873 64880873 A G CACNG5 Intron 0.27 TCGA-BP-5175-01 19 53656986 53656986 C G ZNF347 Missense_Mutation p.Q5H 0.18 deleterious(0) possibly_damaging(0.452) TCGA-BP-5175-01 1 11217299 11217299 A G MTOR Missense_Mutation p.L1460P 0.30 deleterious(0) probably_damaging(0.936) TCGA-BP-5175-01 1 156565621 156565621 G T GPATCH4 Missense_Mutation p.T171K 0.17 tolerated(0.17) possibly_damaging(0.904) TCGA-BP-5175-01 1 161093979 161093979 T A DEDD Missense_Mutation p.I92F 0.09 deleterious(0.01) possibly_damaging(0.906) TCGA-BP-5175-01 1 19455528 19455528 G A UBR4 Nonsense_Mutation p.Q2983* 0.27 TCGA-BP-5175-01 1 86453338 86453338 C A COL24A1 Splice_Site p.X771_splice 0.19 TCGA-BP-5175-01 20 25011448 25011448 G A ACSS1 Missense_Mutation p.T193I 0.30 deleterious(0) possibly_damaging(0.756) TCGA-BP-5175-01 20 33575921 33575921 C A MYH7B Silent p.I523I 0.32 TCGA-BP-5175-01 20 57876745 57876745 C T EDN3 Silent p.C111C 0.26 TCGA-BP-5175-01 22 50187702 50187702 C A BRD1 Missense_Mutation p.G780V 0.27 tolerated(0.14) benign(0.082) TCGA-BP-5175-01 22 50724518 50724518 G T PLXNB2 Silent p.S629S 0.14 TCGA-BP-5175-01 2 105959481 105959481 G A C2orf49 Missense_Mutation p.S148N 0.28 tolerated(0.82) benign(0.004) TCGA-BP-5175-01 2 128407597 128407597 G A GPR17 Missense_Mutation p.R4Q 0.10 tolerated_low_confidence(0.27) benign(0) TCGA-BP-5175-01 2 185802977 185802977 T C ZNF804A Missense_Mutation p.F952L 0.10 tolerated(0.37) possibly_damaging(0.899) TCGA-BP-5175-01 2 225370726 225370727 GA - CUL3 Frame_Shift_Del p.P385* 0.26 TCGA-BP-5175-01 2 8953448 8953448 A C KIDINS220 Silent p.L108L 0.25 TCGA-BP-5175-01 3 10183752 10183752 T A VHL Missense_Mutation p.V74D 0.43 deleterious(0) probably_damaging(0.994) TCGA-BP-5175-01 3 121340772 121340772 G T FBXO40 Missense_Mutation p.V166L 0.34 tolerated(0.7) benign(0) TCGA-BP-5175-01 3 124438413 124438413 C T RP11-71H17.7 5'Flank 0.25 TCGA-BP-5175-01 3 38287677 38287677 C G OXSR1 Missense_Mutation p.L408V 0.09 tolerated(0.4) benign(0.001) TCGA-BP-5175-01 4 115858556 115858556 C T NDST4 Missense_Mutation p.G442D 0.14 tolerated(0.35) benign(0.001) TCGA-BP-5175-01 4 68514833 68514833 C T UBA6 Missense_Mutation p.E401K 0.35 deleterious(0) probably_damaging(1) TCGA-BP-5175-01 4 8584302 8584302 G A GPR78 Missense_Mutation p.R238H 0.10 deleterious(0) probably_damaging(0.955) TCGA-BP-5175-01 5 149240511 149240511 C A PDE6A Nonsense_Mutation p.G844* 0.34 TCGA-BP-5175-01 5 180670812 180670812 G C GNB2L1 5'UTR 0.33 TCGA-BP-5175-01 5 21783501 21783501 C T CDH12 Silent p.A453A 0.26 TCGA-BP-5175-01 5 32088233 32088233 C T PDZD2 Missense_Mutation p.S1560F 0.06 deleterious(0) probably_damaging(0.999) TCGA-BP-5175-01 5 32088238 32088238 C T PDZD2 Missense_Mutation p.P1562S 0.07 tolerated(0.11) benign(0.382) TCGA-BP-5175-01 5 32090571 32090571 C T PDZD2 Silent p.I2339I 0.07 TCGA-BP-5175-01 5 41159278 41159278 C G C6 Missense_Mutation p.E588Q 0.04 tolerated(0.18) benign(0.088) TCGA-BP-5175-01 5 72419335 72419335 G C TMEM171 Missense_Mutation p.Q45H 0.07 deleterious(0) probably_damaging(0.999) TCGA-BP-5175-01 5 864640 864640 G T BRD9 Silent p.T579T 0.23 TCGA-BP-5175-01 6 32065169 32065169 C T TNXB Missense_Mutation p.C154Y 0.12 probably_damaging(0.983) TCGA-BP-5175-01 6 43642986 43642986 A T MRPS18A Silent p.P133P 0.14 TCGA-BP-5175-01 6 90338835 90338835 C - ANKRD6 Frame_Shift_Del p.L498Wfs*5 0.30 TCGA-BP-5175-01 8 92982925 92982925 G A RUNX1T1 Silent p.D511D 0.19 TCGA-BP-5176-01 10 101163595 101163595 G A GOT1 Nonsense_Mutation p.Q227* 0.25 TCGA-BP-5176-01 10 16979763 16979763 A C CUBN Missense_Mutation p.I1918M 0.19 deleterious(0.01) probably_damaging(0.91) TCGA-BP-5176-01 10 18874976 18874977 - T NSUN6 Frame_Shift_Ins p.I275Nfs*19 0.34 TCGA-BP-5176-01 10 61829377 61829377 T C ANK3 Silent p.G3754G 0.25 TCGA-BP-5176-01 11 111930750 111930750 C G DLAT Silent p.T546T 0.21 TCGA-BP-5176-01 11 124413531 124413531 G A OR8B12 Missense_Mutation p.S7F 0.24 deleterious_low_confidence(0.03) benign(0.027) TCGA-BP-5176-01 11 134029917 134029917 T C NCAPD3 Missense_Mutation p.K1246R 0.25 tolerated(0.14) benign(0.011) TCGA-BP-5176-01 11 2185540 2185540 G - TH Frame_Shift_Del p.Q504Rfs*21 0.17 TCGA-BP-5176-01 11 30352900 30352900 G A ARL14EP Silent p.Q135Q 0.22 TCGA-BP-5176-01 11 5618060 5618060 T G TRIM6 5'UTR 0.20 TCGA-BP-5176-01 11 66191067 66191067 T G NPAS4 Missense_Mutation p.I276S 0.30 tolerated(0.41) benign(0.02) TCGA-BP-5176-01 11 73681196 73681196 C T DNAJB13 3'UTR 0.10 TCGA-BP-5176-01 11 74546695 74546695 A T RNF169 Silent p.L349L 0.26 TCGA-BP-5176-01 12 117665305 117665305 T G NOS1 Missense_Mutation p.S1217R 0.25 deleterious(0) probably_damaging(0.999) TCGA-BP-5176-01 12 121013684 121013684 T C RNF10 Missense_Mutation p.S764P 0.33 deleterious(0) probably_damaging(0.993) TCGA-BP-5176-01 12 22812052 22812052 T A ETNK1 Missense_Mutation p.I263N 0.20 deleterious(0) probably_damaging(0.938) TCGA-BP-5176-01 12 47629733 47629733 C A PCED1B Missense_Mutation p.S296Y 0.38 tolerated(0.21) benign(0.016) TCGA-BP-5176-01 12 57589705 57589705 C A LRP1 Missense_Mutation p.R2874S 0.30 benign(0.006) TCGA-BP-5176-01 12 93793101 93793101 T C NUDT4 Silent p.N164N 0.10 TCGA-BP-5176-01 13 42891796 42891796 A T AKAP11 Missense_Mutation p.H1846L 0.29 tolerated(0.08) possibly_damaging(0.543) TCGA-BP-5176-01 14 103416228 103416229 GT - CDC42BPB Frame_Shift_Del p.T1108Gfs*15 0.22 TCGA-BP-5176-01 14 104208276 104208276 G A PPP1R13B Missense_Mutation p.A558V 0.29 deleterious(0) possibly_damaging(0.782) TCGA-BP-5176-01 14 23393369 23393369 T A PRMT5 Missense_Mutation p.E408V 0.26 tolerated(0.53) benign(0.145) TCGA-BP-5176-01 14 33292170 33292170 G C AKAP6 Silent p.S1717S 0.25 TCGA-BP-5176-01 14 36096435 36096436 - T RALGAPA1 Frame_Shift_Ins p.E1734Rfs*4 0.22 TCGA-BP-5176-01 14 50790719 50790719 G A ATP5S Missense_Mutation p.D140N 0.27 tolerated(0.43) benign(0.003) TCGA-BP-5176-01 14 57271023 57271023 C A OTX2 Silent p.T52T 0.16 TCGA-BP-5176-01 14 95557550 95557550 C A DICER1 Silent p.R1839R 0.28 TCGA-BP-5176-01 15 35085454 35085454 C T ACTC1 Missense_Mutation p.R149H 0.29 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-BP-5176-01 15 41364204 41364204 G T INO80 Missense_Mutation p.A483E 0.29 tolerated(0.74) possibly_damaging(0.677) TCGA-BP-5176-01 15 43699486 43699486 G T TP53BP1 3'UTR 0.24 TCGA-BP-5176-01 15 59205785 59205786 TA - SLTM Frame_Shift_Del p.L142Sfs*11 0.23 TCGA-BP-5176-01 15 63944712 63944712 T G HERC1 Missense_Mutation p.K3440T 0.10 probably_damaging(0.999) TCGA-BP-5176-01 16 10861923 10861923 C A TVP23A 3'UTR 0.23 TCGA-BP-5176-01 16 14965476 14965476 A G NOMO1 Splice_Site p.X632_splice 0.16 TCGA-BP-5176-01 16 20451770 20451770 C T ACSM5 3'UTR 0.47 TCGA-BP-5176-01 16 20651789 20651789 C T ACSM1 Silent p.S370S 0.34 TCGA-BP-5176-01 16 20998759 20998759 T - DNAH3 Frame_Shift_Del p.K2298Nfs*18 0.29 TCGA-BP-5176-01 16 28944420 28944420 C T CD19 Nonsense_Mutation p.Q182* 0.15 TCGA-BP-5176-01 16 49557609 49557609 C A ZNF423 Missense_Mutation p.V1251L 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.474) TCGA-BP-5176-01 16 56974151 56974151 T C HERPUD1 Missense_Mutation p.M300T 0.34 deleterious(0) probably_damaging(0.954) TCGA-BP-5176-01 16 9010986 9010986 C T USP7 Missense_Mutation p.D250N 0.24 deleterious(0) probably_damaging(0.998) TCGA-BP-5176-01 17 19582221 19582221 T C SLC47A2 Splice_Site p.X530_splice 0.78 TCGA-BP-5176-01 17 27896080 27896080 G A TP53I13 Silent p.E39E 0.25 TCGA-BP-5176-01 17 29684022 29684022 A G NF1 Missense_Mutation p.K2595E 0.26 deleterious_low_confidence(0.03) probably_damaging(0.952) TCGA-BP-5176-01 17 48356271 48356271 T A TMEM92 Missense_Mutation p.C94S 0.23 tolerated(0.18) benign(0.085) TCGA-BP-5176-01 17 56082624 56082624 G A SRSF1 3'UTR 0.32 TCGA-BP-5176-01 17 73258412 73258412 C T MRPS7 Intron 0.20 TCGA-BP-5176-01 17 8076788 8076788 C A TMEM107 3'Flank 0.31 TCGA-BP-5176-01 18 45395769 45395769 C A SMAD2 Missense_Mutation p.G122V 0.24 deleterious(0.02) possibly_damaging(0.633) TCGA-BP-5176-01 18 56204268 56204268 A G ALPK2 Missense_Mutation p.F1051L 0.35 tolerated(1) benign(0.001) TCGA-BP-5176-01 18 67992983 67992983 C T SOCS6 Missense_Mutation p.S360L 0.25 tolerated(0.13) benign(0.164) TCGA-BP-5176-01 18 72109246 72109246 A - FAM69C Frame_Shift_Del p.S328Qfs*15 0.25 TCGA-BP-5176-01 18 72346444 72346444 A C ZNF407 Missense_Mutation p.N1157H 0.25 tolerated(0.06) benign(0.011) TCGA-BP-5176-01 19 14627690 14627690 A C DNAJB1 Missense_Mutation p.I127S 0.30 tolerated(0.3) benign(0.104) TCGA-BP-5176-01 19 15224541 15224561 GGGCGGGACTTCCTGCCCTGT - SYDE1 In_Frame_Del p.P664_L670del 0.20 TCGA-BP-5176-01 19 3813874 3813874 T - ZFR2 Frame_Shift_Del p.Q729Rfs*10 0.27 TCGA-BP-5176-01 19 43258643 43258643 G C PSG8 Missense_Mutation p.A362G 0.03 deleterious(0.01) possibly_damaging(0.793) TCGA-BP-5176-01 19 52196178 52196178 C T SPACA6P-AS RNA 0.25 TCGA-BP-5176-01 1 11217303 11217303 C G MTOR Missense_Mutation p.A1459P 0.22 deleterious(0) probably_damaging(0.996) TCGA-BP-5176-01 1 120458462 120458463 - TATA NOTCH2 Frame_Shift_Ins p.T2295Yfs*19 0.30 TCGA-BP-5176-01 1 13743046 13743046 C A PRAMEF20 Missense_Mutation p.Q79K 0.29 tolerated(0.2) benign(0.009) TCGA-BP-5176-01 1 14108935 14108935 T - PRDM2 Frame_Shift_Del p.S1549Hfs*15 0.24 TCGA-BP-5176-01 1 154456584 154456584 C G SHE 3'UTR 0.24 TCGA-BP-5176-01 1 201013477 201013477 C G CACNA1S Silent p.A1592A 0.20 TCGA-BP-5176-01 1 228033920 228033920 C A PRSS38 3'UTR 0.18 TCGA-BP-5176-01 1 232650976 232650976 T A SIPA1L2 Missense_Mutation p.K37I 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-BP-5176-01 1 233296143 233296143 C A PCNXL2 Missense_Mutation p.A1135S 0.18 tolerated(0.36) benign(0.002) TCGA-BP-5176-01 1 24434560 24434560 T C MYOM3 Silent p.E55E 0.29 TCGA-BP-5176-01 1 74663859 74663859 T C LRRIQ3 5'UTR 0.29 TCGA-BP-5176-01 1 7886603 7886603 C A PER3 Nonsense_Mutation p.S666* 0.20 TCGA-BP-5176-01 20 44684805 44684805 A T SLC12A5 Missense_Mutation p.D958V 0.21 deleterious(0.04) possibly_damaging(0.822) TCGA-BP-5176-01 20 5154171 5154171 G T CDS2 Missense_Mutation p.E20D 0.26 tolerated(0.45) benign(0.011) TCGA-BP-5176-01 20 57485057 57485057 C T GNAS Silent p.L940L 0.21 TCGA-BP-5176-01 20 58514505 58514505 G A PPP1R3D Missense_Mutation p.P161L 0.22 deleterious(0.03) benign(0.008) TCGA-BP-5176-01 21 27141472 27141472 C A GABPA Missense_Mutation p.H432N 0.31 tolerated_low_confidence(0.14) benign(0.156) TCGA-BP-5176-01 21 34721421 34721421 A T IFNAR1 Silent p.G271G 0.25 TCGA-BP-5176-01 22 24451598 24451598 C T CABIN1 Silent p.L357L 0.19 TCGA-BP-5176-01 22 26388405 26388405 C T MYO18B Missense_Mutation p.A2078V 0.07 tolerated(0.13) possibly_damaging(0.596) TCGA-BP-5176-01 22 31927108 31927108 A - SFI1 Frame_Shift_Del p.A112Pfs*45 0.23 TCGA-BP-5176-01 2 158958486 158958486 T G UPP2 Intron 0.25 TCGA-BP-5176-01 2 160268963 160268963 G T BAZ2B Missense_Mutation p.Q854K 0.25 benign(0.177) TCGA-BP-5176-01 2 179613182 179613182 T - TTN Intron 0.29 TCGA-BP-5176-01 2 187615886 187615886 T C FAM171B Silent p.P250P 0.31 TCGA-BP-5176-01 2 20527068 20527068 T C PUM2 Intron 0.30 TCGA-BP-5176-01 2 220075171 220075171 A C ABCB6 Missense_Mutation p.N761K 0.33 deleterious(0) benign(0.06) TCGA-BP-5176-01 2 231407658 231407658 T G SP100 Missense_Mutation p.I885M 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.506) TCGA-BP-5176-01 2 27550049 27550049 G - GTF3C2 Frame_Shift_Del p.H838Ifs*98 0.30 TCGA-BP-5176-01 2 63283120 63283120 G A OTX1 Missense_Mutation p.G245D 0.31 deleterious(0) unknown(0) TCGA-BP-5176-01 2 86831681 86831681 T A RNF103 Missense_Mutation p.N448I 0.20 deleterious(0.02) possibly_damaging(0.547) TCGA-BP-5176-01 3 10191571 10191571 G T VHL Silent p.L188L 0.24 TCGA-BP-5176-01 3 10191572 10191572 G T VHL Nonsense_Mutation p.E189* 0.24 TCGA-BP-5176-01 3 124952230 124952230 A G ZNF148 Missense_Mutation p.V447A 0.04 tolerated(0.07) benign(0.294) TCGA-BP-5176-01 3 128813982 128813982 G A RAB43 Missense_Mutation p.R79W 0.20 deleterious(0) benign(0.177) TCGA-BP-5176-01 3 133306843 133306843 T C CDV3 Missense_Mutation p.Y244H 0.30 tolerated(0.05) benign(0.11) TCGA-BP-5176-01 3 150916820 150916820 G A GPR171 Silent p.H118H 0.27 TCGA-BP-5176-01 3 156249255 156249255 A T KCNAB1 Missense_Mutation p.E380V 0.21 deleterious(0.02) benign(0.065) TCGA-BP-5176-01 3 197410178 197410178 C T KIAA0226 Silent p.K660K 0.15 TCGA-BP-5176-01 3 48725685 48725685 G T IP6K2 3'UTR 0.36 TCGA-BP-5176-01 3 51971260 51971260 G T RRP9 Silent p.T155T 0.36 TCGA-BP-5176-01 3 52678764 52678771 AGCCTTTT - PBRM1 Frame_Shift_Del p.K283Rfs*3 0.20 TCGA-BP-5176-01 4 142651079 142651079 T G IL15 Missense_Mutation p.I107S 0.31 deleterious(0.03) benign(0.332) TCGA-BP-5176-01 4 38924467 38924472 TCTTTG CA FAM114A1 Frame_Shift_Del p.I341Tfs*6 0.15 TCGA-BP-5176-01 4 77082897 77082897 G A SCARB2 Missense_Mutation p.A469V 0.26 tolerated(0.26) benign(0.011) TCGA-BP-5176-01 4 82380577 82380577 C T RASGEF1B Missense_Mutation p.G29E 0.35 tolerated(0.13) benign(0.001) TCGA-BP-5176-01 5 101631681 101631681 G A SLCO4C1 Nonsense_Mutation p.Q96* 0.25 TCGA-BP-5176-01 5 136328254 136328254 G A SPOCK1 Missense_Mutation p.R209W 0.28 deleterious(0) probably_damaging(1) TCGA-BP-5176-01 5 13692053 13692053 T C DNAH5 3'UTR 0.29 TCGA-BP-5176-01 5 140773214 140773214 A G PCDHGA8 Silent p.A278A 0.27 TCGA-BP-5176-01 5 150901058 150901058 A T FAT2 Missense_Mutation p.L3699Q 0.29 benign(0.334) TCGA-BP-5176-01 5 154254886 154254899 TGTGGGCGGCTCTA - CNOT8 Frame_Shift_Del p.C256Wfs*12 0.24 TCGA-BP-5176-01 5 178506605 178506605 G A ZNF354C Missense_Mutation p.R391K 0.29 tolerated(1) probably_damaging(0.997) TCGA-BP-5176-01 5 180483000 180483000 G T BTNL9 Missense_Mutation p.A314S 0.17 tolerated(0.47) benign(0.006) TCGA-BP-5176-01 5 180483001 180483001 C G BTNL9 Missense_Mutation p.A314G 0.17 deleterious(0.01) benign(0.113) TCGA-BP-5176-01 5 50120778 50120778 C G PARP8 Missense_Mutation p.Q633E 0.04 tolerated(1) benign(0.071) TCGA-BP-5176-01 5 64314094 64314096 AAG - CWC27 In_Frame_Del p.R458del 0.16 TCGA-BP-5176-01 6 144768773 144768773 A T UTRN Silent p.T586T 0.23 TCGA-BP-5176-01 6 158541585 158541585 T C SERAC1 Silent p.E346E 0.33 TCGA-BP-5176-01 6 35471404 35471404 G A TULP1 Missense_Mutation p.R419W 0.26 deleterious(0) probably_damaging(0.999) TCGA-BP-5176-01 6 47650019 47650019 C T GPR111 Missense_Mutation p.A575V 0.25 deleterious(0) probably_damaging(1) TCGA-BP-5176-01 6 89855893 89855893 A C PM20D2 Missense_Mutation p.E10D 0.30 deleterious_low_confidence(0.02) benign(0) TCGA-BP-5176-01 7 116164929 116164929 A T CAV1 5'UTR 0.25 TCGA-BP-5176-01 7 119914961 119914961 T C KCND2 Missense_Mutation p.F92S 0.26 deleterious(0) probably_damaging(1) TCGA-BP-5176-01 7 149559035 149559035 T C ZNF862 Missense_Mutation p.I929T 0.23 tolerated(0.15) benign(0.007) TCGA-BP-5176-01 7 150558103 150558103 C G AOC1 Missense_Mutation p.P688A 0.29 tolerated(0.45) possibly_damaging(0.71) TCGA-BP-5176-01 7 72985071 72985071 C A TBL2 Silent p.R370R 0.22 TCGA-BP-5176-01 7 81346622 81346622 T G HGF Missense_Mutation p.D444A 0.23 deleterious(0) probably_damaging(1) TCGA-BP-5176-01 8 2020501 2020501 G A MYOM2 Silent p.R290R 0.16 TCGA-BP-5176-01 8 25744310 25744310 G C EBF2 Missense_Mutation p.Q324E 0.16 deleterious(0.03) possibly_damaging(0.683) TCGA-BP-5176-01 8 28209195 28209195 G T ZNF395 Silent p.T350T 0.04 TCGA-BP-5176-01 8 37556057 37556057 C A ZNF703 Missense_Mutation p.H546Q 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-BP-5176-01 8 39624434 39624434 A C ADAM2 Missense_Mutation p.N480K 0.30 tolerated(0.14) benign(0.085) TCGA-BP-5176-01 8 59488529 59488529 G A SDCBP Missense_Mutation p.R104H 0.05 tolerated(0.07) benign(0.008) TCGA-BP-5176-01 8 67790811 67790811 T A MCMDC2 Missense_Mutation p.F162I 0.29 deleterious(0.01) probably_damaging(0.974) TCGA-BP-5176-01 8 74894661 74894661 C A TMEM70 3'UTR 0.21 TCGA-BP-5176-01 8 77896064 77896064 T A PEX2 Missense_Mutation p.E117D 0.27 tolerated(0.16) benign(0.159) TCGA-BP-5176-01 8 87738806 87738806 T C CNGB3 Silent p.T97T 0.03 TCGA-BP-5176-01 9 104238257 104238257 T A TMEM246 Missense_Mutation p.K373M 0.27 tolerated(0.06) probably_damaging(0.998) TCGA-BP-5176-01 9 117085485 117085485 C T ORM1 Silent p.A24A 0.11 TCGA-BP-5176-01 9 139360547 139360547 G T SEC16A Nonsense_Mutation p.Y1390* 0.19 TCGA-BP-5176-01 9 21166125 21166125 C A IFNA21 Missense_Mutation p.A163S 0.24 deleterious(0.03) possibly_damaging(0.585) TCGA-BP-5176-01 9 35396577 35396577 G C UNC13B Missense_Mutation p.G1056R 0.24 deleterious(0.02) benign(0.147) TCGA-BP-5176-01 9 35563218 35563218 T G FAM166B Silent p.L77L 0.22 TCGA-BP-5176-01 9 35563221 35563221 A G FAM166B Silent p.S76S 0.22 TCGA-BP-5176-01 9 98279210 98279215 AACTCG - RP11-435O5.4 3'Flank 0.36 TCGA-BP-5176-01 X 106109183 106109183 C G TBC1D8B Nonsense_Mutation p.S861* 0.20 TCGA-BP-5176-01 X 124097394 124097394 G - TENM1 Frame_Shift_Del p.S70Lfs*32 0.30 TCGA-BP-5176-01 X 23929902 23929902 A G CXorf58 Missense_Mutation p.I49V 0.03 deleterious(0.03) probably_damaging(0.935) TCGA-BP-5176-01 X 31792262 31792262 C G DMD Missense_Mutation p.E2453Q 0.21 possibly_damaging(0.607) TCGA-BP-5176-01 X 54957820 54957820 C T TRO 3'UTR 0.32 TCGA-BP-5176-01 X 5821496 5821496 C T NLGN4X Missense_Mutation p.G408D 0.30 tolerated(0.05) probably_damaging(0.999) TCGA-BP-5177-01 10 43315792 43315792 T - BMS1 Frame_Shift_Del p.F897Lfs*30 0.17 TCGA-BP-5177-01 11 62475843 62475843 G T GNG3 Nonsense_Mutation p.E26* 0.25 TCGA-BP-5177-01 11 64338518 64338518 T C SLC22A11 3'UTR 0.26 TCGA-BP-5177-01 11 726936 726936 G C EPS8L2 Missense_Mutation p.M701I 0.10 deleterious(0.02) benign(0.005) TCGA-BP-5177-01 12 57619419 57619419 G A NXPH4 Silent p.K272K 0.14 TCGA-BP-5177-01 12 64377783 64377783 C T SRGAP1 Nonsense_Mutation p.R42* 0.18 TCGA-BP-5177-01 13 114107552 114107552 C G ADPRHL1 Missense_Mutation p.E67D 0.14 deleterious(0.04) possibly_damaging(0.497) TCGA-BP-5177-01 14 102901086 102901086 C T TECPR2 Silent p.L644L 0.16 TCGA-BP-5177-01 14 70459140 70459140 G A SMOC1 Missense_Mutation p.G178E 0.27 deleterious(0.03) probably_damaging(1) TCGA-BP-5177-01 14 93686659 93686659 A - UBR7 Frame_Shift_Del p.N343Tfs*15 0.23 TCGA-BP-5177-01 15 25456944 25456944 G A SNORD115-23 RNA 0.19 TCGA-BP-5177-01 15 42108803 42108803 C A MAPKBP1 Missense_Mutation p.H520N 0.26 deleterious(0) probably_damaging(1) TCGA-BP-5177-01 15 42446347 42446347 G A PLA2G4F Silent p.D131D 0.08 TCGA-BP-5177-01 16 2546654 2546654 A G RP11-20I23.1 Missense_Mutation p.I169V 0.21 tolerated(0.32) benign(0.03) TCGA-BP-5177-01 17 48941286 48941286 T C TOB1 Silent p.E31E 0.25 TCGA-BP-5177-01 17 66881449 66881449 A G ABCA8 Missense_Mutation p.V1106A 0.21 tolerated(0.14) benign(0.005) TCGA-BP-5177-01 17 6920727 6920727 A C C17orf49 3'Flank 0.13 TCGA-BP-5177-01 17 7462515 7462516 AG - TNFSF13 Frame_Shift_Del p.E54Afs*70 0.20 TCGA-BP-5177-01 18 20716478 20716478 C T CABLES1 Missense_Mutation p.A251V 0.27 deleterious_low_confidence(0.02) benign(0.006) TCGA-BP-5177-01 18 33272259 33272259 C A GALNT1 Missense_Mutation p.P425Q 0.26 deleterious(0) probably_damaging(0.964) TCGA-BP-5177-01 19 19329874 19329874 G T NCAN Missense_Mutation p.R75L 0.24 deleterious(0) probably_damaging(0.999) TCGA-BP-5177-01 19 19625999 19625999 C T TSSK6 Missense_Mutation p.E80K 0.27 deleterious(0.03) probably_damaging(0.947) TCGA-BP-5177-01 19 3600380 3600380 C T TBXA2R Missense_Mutation p.V85M 0.08 deleterious(0) probably_damaging(0.988) TCGA-BP-5177-01 19 50926877 50926877 G A SPIB Missense_Mutation p.A119T 0.27 tolerated(0.21) benign(0.121) TCGA-BP-5177-01 19 52825621 52825621 G A ZNF480 Missense_Mutation p.C373Y 0.24 deleterious(0) probably_damaging(1) TCGA-BP-5177-01 19 53058948 53058952 GAAGA - ZNF808 3'UTR 0.18 TCGA-BP-5177-01 19 57865095 57865095 T - ZNF304 Frame_Shift_Del p.C13Vfs*2 0.26 TCGA-BP-5177-01 19 7999040 7999040 C T TIMM44 Silent p.S159S 0.27 TCGA-BP-5177-01 1 11579432 11579432 G A PTCHD2 Missense_Mutation p.R637Q 0.23 tolerated(0.16) benign(0.16) TCGA-BP-5177-01 1 145508564 145508564 A C RBM8A Missense_Mutation p.I99L 0.26 deleterious(0.03) probably_damaging(0.971) TCGA-BP-5177-01 1 154705482 154705482 G A KCNN3 Silent p.I529I 0.17 TCGA-BP-5177-01 1 176055007 176055007 T C RFWD2 Missense_Mutation p.Y349C 0.19 tolerated(0.15) benign(0.04) TCGA-BP-5177-01 1 201751584 201751584 C T NAV1 Silent p.S648S 0.23 TCGA-BP-5177-01 1 70766485 70766485 C A ANKRD13C Missense_Mutation p.D295Y 0.26 deleterious(0) probably_damaging(0.979) TCGA-BP-5177-01 1 86913358 86913358 T C CLCA2 Silent p.N627N 0.32 TCGA-BP-5177-01 20 37653938 37653939 - ACTGTA DHX35 In_Frame_Ins p.T580_V581dup 0.13 TCGA-BP-5177-01 22 46319160 46319160 C T WNT7B Missense_Mutation p.C209Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-BP-5177-01 2 133540492 133540492 G A NCKAP5 Missense_Mutation p.R1298C 0.08 deleterious(0) probably_damaging(1) TCGA-BP-5177-01 2 177016412 177016412 C G HOXD4 Missense_Mutation p.F17L 0.15 deleterious(0) possibly_damaging(0.615) TCGA-BP-5177-01 2 220034713 220034713 T C SLC23A3 5'UTR 0.57 TCGA-BP-5177-01 3 10188246 10188246 T A VHL Missense_Mutation p.V130D 0.34 deleterious(0) probably_damaging(0.986) TCGA-BP-5177-01 3 151176495 151176495 C A IGSF10 Translation_Start_Site p.M1? 0.06 deleterious(0) probably_damaging(0.986) TCGA-BP-5177-01 3 23960059 23960059 G T RPL15 Missense_Mutation p.V101F 0.06 deleterious(0.03) possibly_damaging(0.76) TCGA-BP-5177-01 3 58131651 58131652 GC - FLNB Frame_Shift_Del p.S1841Tfs*49 0.17 TCGA-BP-5177-01 4 146058470 146058470 T C OTUD4 3'UTR 0.19 TCGA-BP-5177-01 4 74919821 74919821 G T PPBPP2 RNA 0.21 TCGA-BP-5177-01 5 145969341 145969341 T G PPP2R2B 3'UTR 0.21 TCGA-BP-5177-01 5 148980668 148980668 C T ARHGEF37 Intron 0.41 TCGA-BP-5177-01 6 106968602 106968602 G A AIM1 Silent p.P765P 0.24 TCGA-BP-5177-01 6 138601236 138601237 TT C KIAA1244 Frame_Shift_Del p.L799Pfs*21 0.19 TCGA-BP-5177-01 6 31928014 31928014 C T SKIV2L Missense_Mutation p.T85M 0.16 tolerated(0.31) benign(0.005) TCGA-BP-5177-01 7 120590838 120590838 C T ING3 5'UTR 0.24 TCGA-BP-5177-01 7 21639591 21639591 C T DNAH11 Missense_Mutation p.P952S 0.49 benign(0.02) TCGA-BP-5177-01 7 66103415 66103416 AA G KCTD7 Frame_Shift_Del p.K164Efs*109 0.23 TCGA-BP-5177-01 9 95077535 95077535 C T NOL8 Missense_Mutation p.D458N 0.18 tolerated(0.27) benign(0.006) TCGA-BP-5177-01 X 70516466 70516466 G T NONO Missense_Mutation p.E234D 0.13 tolerated(1) benign(0.02) TCGA-BP-5177-01 X 73063375 73063375 G C XIST RNA 0.05 TCGA-BP-5177-01 X 75397644 75397644 A G PBDC1 Silent p.K201K 0.14 TCGA-BP-5178-01 10 126670374 126670374 A G ZRANB1 Silent p.A508A 0.18 TCGA-BP-5178-01 11 113934513 113934532 AGGAGAGTGGGTATGCCAGT - ZBTB16 Frame_Shift_Del p.E164Gfs*70 0.30 TCGA-BP-5178-01 11 128680490 128680490 C T FLI1 Silent p.G322G 0.24 TCGA-BP-5178-01 11 18600293 18600293 G T UEVLD Missense_Mutation p.F35L 0.28 tolerated(0.34) probably_damaging(0.997) TCGA-BP-5178-01 11 58949232 58949232 C T DTX4 Missense_Mutation p.R78C 0.04 deleterious(0.03) possibly_damaging(0.797) TCGA-BP-5178-01 11 59834429 59834429 G T MS4A3 Missense_Mutation p.Q119H 0.13 deleterious(0) possibly_damaging(0.784) TCGA-BP-5178-01 11 77412660 77412660 T G RSF1 Missense_Mutation p.E538D 0.17 tolerated_low_confidence(0.11) benign(0.007) TCGA-BP-5178-01 12 27529304 27529304 A - ARNTL2 Frame_Shift_Del p.M105* 0.36 TCGA-BP-5178-01 12 43777521 43777521 G A ADAMTS20 Missense_Mutation p.S1546L 0.45 deleterious(0.03) benign(0.104) TCGA-BP-5178-01 12 55250594 55250594 T A MUCL1 Silent p.T47T 0.39 TCGA-BP-5178-01 12 57005554 57005554 C G BAZ2A Intron 0.44 TCGA-BP-5178-01 13 103520522 103520522 G A BIVM-ERCC5 Missense_Mutation p.G1291R 0.14 deleterious(0) possibly_damaging(0.876) TCGA-BP-5178-01 14 20847178 20847178 G A TEP1 Silent p.D1738D 0.11 TCGA-BP-5178-01 14 57070637 57070637 A G TMEM260 Missense_Mutation p.N150S 0.13 deleterious(0) possibly_damaging(0.891) TCGA-BP-5178-01 15 100594117 100594117 T C ADAMTS17 Silent p.L760L 0.28 TCGA-BP-5178-01 15 73843391 73843391 C T C15orf60 Missense_Mutation p.P149L 0.23 tolerated(0.06) possibly_damaging(0.664) TCGA-BP-5178-01 15 75581825 75581825 G A GOLGA6D Splice_Site p.X217_splice 0.14 TCGA-BP-5178-01 16 15126793 15126793 G T PDXDC1 Silent p.L549L 0.26 TCGA-BP-5178-01 16 18544391 18544391 G A NOMO2 Missense_Mutation p.T444I 0.07 tolerated(0.09) benign(0.073) TCGA-BP-5178-01 16 47733322 47733322 G T PHKB 3'UTR 0.15 TCGA-BP-5178-01 16 67290936 67290936 C T SLC9A5 Silent p.L419L 0.29 TCGA-BP-5178-01 16 77228407 77228409 CCT - MON1B In_Frame_Del p.L218del 0.34 TCGA-BP-5178-01 17 21826096 21826096 G T FAM27L Intron 0.31 TCGA-BP-5178-01 17 30692370 30692370 G A ZNF207 Missense_Mutation p.R231H 0.16 tolerated(0.19) benign(0.238) TCGA-BP-5178-01 17 53014035 53014035 T C TOM1L1 Silent p.L294L 0.39 TCGA-BP-5178-01 17 56277703 56277703 G A EPX Missense_Mutation p.G552E 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-BP-5178-01 17 79166553 79166553 C T AZI1 Silent p.L804L 0.16 TCGA-BP-5178-01 17 80915092 80915092 T G B3GNTL1 Missense_Mutation p.I299L 0.15 deleterious(0.02) benign(0.082) TCGA-BP-5178-01 19 1827759 1827759 C A REXO1 Missense_Mutation p.Q343H 0.27 deleterious(0.04) probably_damaging(0.995) TCGA-BP-5178-01 19 31769985 31769985 A T TSHZ3 Missense_Mutation p.H238Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-BP-5178-01 19 31769986 31769986 T A TSHZ3 Missense_Mutation p.H238L 0.24 deleterious(0) probably_damaging(0.999) TCGA-BP-5178-01 19 39914662 39914671 CCTCCAGGTG - PLEKHG2 Frame_Shift_Del p.L964Rfs*79 0.29 TCGA-BP-5178-01 19 40903260 40903260 C T PRX Silent p.V333V 0.36 TCGA-BP-5178-01 19 46174612 46174612 G A GIPR Missense_Mutation p.R81H 0.29 deleterious(0.04) possibly_damaging(0.647) TCGA-BP-5178-01 19 51462556 51462556 G A KLK6 Missense_Mutation p.P200L 0.16 deleterious(0) probably_damaging(1) TCGA-BP-5178-01 19 54515324 54515324 G A CACNG6 Missense_Mutation p.G222S 0.26 tolerated(0.33) possibly_damaging(0.676) TCGA-BP-5178-01 1 150049228 150049228 C T VPS45 Silent p.L165L 0.08 TCGA-BP-5178-01 1 160302290 160302290 G C COPA Missense_Mutation p.D148E 0.10 deleterious(0) possibly_damaging(0.891) TCGA-BP-5178-01 1 24408447 24408447 C A MYOM3 Intron 0.11 TCGA-BP-5178-01 1 245848753 245848753 G A KIF26B Missense_Mutation p.R823H 0.10 tolerated(0.12) unknown(0) TCGA-BP-5178-01 1 32042883 32042883 G A TINAGL1 Missense_Mutation p.G45D 0.22 deleterious(0) probably_damaging(1) TCGA-BP-5178-01 1 32504213 32504213 A T KHDRBS1 Missense_Mutation p.S390C 0.18 deleterious(0.04) probably_damaging(0.923) TCGA-BP-5178-01 20 8698474 8698474 G T PLCB1 Nonsense_Mutation p.E498* 0.33 TCGA-BP-5178-01 21 47970565 47970565 G A DIP2A Missense_Mutation p.R916H 0.14 tolerated(0.17) probably_damaging(0.98) TCGA-BP-5178-01 22 46793698 46793698 C T CELSR1 Missense_Mutation p.M1858I 0.30 tolerated(0.33) benign(0.023) TCGA-BP-5178-01 22 50893063 50893063 G A SBF1 Missense_Mutation p.P1641S 0.23 tolerated(1) benign(0.068) TCGA-BP-5178-01 2 131487497 131487497 G T GPR148 Missense_Mutation p.R258L 0.26 tolerated(0.05) possibly_damaging(0.665) TCGA-BP-5178-01 2 142238027 142238027 G T LRP1B Missense_Mutation p.S94Y 0.31 possibly_damaging(0.86) TCGA-BP-5178-01 2 178098956 178098956 A T NFE2L2 Missense_Mutation p.L30H 0.30 deleterious(0) probably_damaging(1) TCGA-BP-5178-01 2 211473212 211473212 C A CPS1 Missense_Mutation p.P780T 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-BP-5178-01 2 224463615 224463615 G A SCG2 Missense_Mutation p.P129L 0.13 tolerated(0.14) benign(0.009) TCGA-BP-5178-01 3 101060582 101060582 C A SENP7 Silent p.L716L 0.18 TCGA-BP-5178-01 3 10191558 10191558 T C VHL Missense_Mutation p.L184P 0.38 deleterious(0) probably_damaging(1) TCGA-BP-5178-01 3 47142967 47142967 A G SETD2 Missense_Mutation p.Y1666H 0.39 deleterious(0) probably_damaging(0.946) TCGA-BP-5178-01 3 79639075 79639075 T - ROBO1 5'UTR 0.44 TCGA-BP-5178-01 4 76882361 76882361 T C SDAD1 Intron 0.17 TCGA-BP-5178-01 5 113831942 113831942 T G KCNN2 3'UTR 0.25 TCGA-BP-5178-01 5 115803361 115803361 C G SEMA6A Silent p.L604L 0.14 TCGA-BP-5178-01 5 138749940 138749940 G A DNAJC18 Missense_Mutation p.A325V 0.13 deleterious(0) probably_damaging(0.986) TCGA-BP-5178-01 5 140482637 140482637 A G PCDHB3 3'UTR 0.17 TCGA-BP-5178-01 5 140712520 140712520 G T PCDHGA1 Missense_Mutation p.V757F 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.707) TCGA-BP-5178-01 6 102503298 102503298 A G GRIK2 Missense_Mutation p.N802S 0.20 tolerated(0.52) benign(0.001) TCGA-BP-5178-01 6 31912529 31912529 C T CFB Missense_Mutation p.S490F 0.20 deleterious(0.02) benign(0.275) TCGA-BP-5178-01 6 34802014 34802014 A C UHRF1BP1 Missense_Mutation p.K120T 0.07 deleterious(0) probably_damaging(1) TCGA-BP-5178-01 6 36767798 36767798 C T CPNE5 Missense_Mutation p.R78H 0.07 deleterious(0.05) benign(0.196) TCGA-BP-5178-01 6 37626191 37626191 C T MDGA1 Missense_Mutation p.R71Q 0.06 deleterious(0) possibly_damaging(0.752) TCGA-BP-5178-01 6 8417152 8417152 A T SLC35B3 Nonsense_Mutation p.L317* 0.12 TCGA-BP-5178-01 7 100490365 100490367 GTT - ACHE In_Frame_Del p.N381del 0.26 TCGA-BP-5178-01 7 128852025 128852025 T G SMO Missense_Mutation p.S699R 0.22 deleterious_low_confidence(0) possibly_damaging(0.618) TCGA-BP-5178-01 8 106813670 106813670 C A ZFPM2 Missense_Mutation p.P454T 0.11 tolerated(0.17) benign(0.076) TCGA-BP-5178-01 8 110476839 110476839 A T PKHD1L1 Missense_Mutation p.D2593V 0.42 deleterious(0) probably_damaging(0.991) TCGA-BP-5178-01 X 15790716 15790716 C T CA5B Silent p.D146D 0.58 TCGA-BP-5178-01 X 70341181 70341181 G T MED12 Missense_Mutation p.G247V 0.26 probably_damaging(1) TCGA-BP-5178-01 X 70516749 70516749 T G NONO Nonsense_Mutation p.Y265* 0.52 TCGA-BP-5180-01 10 104404879 104404879 T C TRIM8 Missense_Mutation p.Y169H 0.35 tolerated(0.06) possibly_damaging(0.558) TCGA-BP-5180-01 10 134910562 134910562 C T GPR123 Missense_Mutation p.L30F 0.59 deleterious(0.01) possibly_damaging(0.547) TCGA-BP-5180-01 10 24498121 24498121 C T KIAA1217 5'UTR 0.27 TCGA-BP-5180-01 10 51582253 51582253 G A NCOA4 Missense_Mutation p.C200Y 0.37 tolerated(1) benign(0) TCGA-BP-5180-01 11 10580541 10580541 G A LYVE1 3'UTR 0.47 TCGA-BP-5180-01 11 608267 608267 C A PHRF1 Silent p.P936P 0.35 TCGA-BP-5180-01 12 100433380 100433380 C T UHRF1BP1L Silent p.R1423R 0.31 TCGA-BP-5180-01 12 11035696 11035696 C T PRH1 Splice_Site p.X22_splice 0.34 TCGA-BP-5180-01 12 2711091 2711091 G T CACNA1C Silent p.L995L 0.41 TCGA-BP-5180-01 12 46123828 46123828 T A ARID2 Missense_Mutation p.S32T 0.42 tolerated(0.64) probably_damaging(0.987) TCGA-BP-5180-01 13 101720338 101720338 G C NALCN Missense_Mutation p.Q1460E 0.35 deleterious(0.01) benign(0.379) TCGA-BP-5180-01 13 42461418 42461428 GGCAAGCCCAA - VWA8 Frame_Shift_Del p.L241Sfs*32 0.36 TCGA-BP-5180-01 13 99578131 99578131 T C DOCK9 Missense_Mutation p.K126E 0.15 deleterious(0.01) possibly_damaging(0.492) TCGA-BP-5180-01 14 24655987 24655987 T G IPO4 Missense_Mutation p.N256T 0.34 tolerated(0.07) benign(0.027) TCGA-BP-5180-01 15 79356851 79356851 G T RASGRF1 Missense_Mutation p.N98K 0.33 tolerated(0.29) benign(0.038) TCGA-BP-5180-01 15 90431758 90431758 T C AP3S2 Missense_Mutation p.I90V 0.34 deleterious(0.01) possibly_damaging(0.491) TCGA-BP-5180-01 17 21146678 21146678 T A C17orf103 Missense_Mutation p.K96M 0.37 deleterious(0) probably_damaging(0.997) TCGA-BP-5180-01 17 46628008 46628008 C T HOXB3 Silent p.E328E 0.37 TCGA-BP-5180-01 17 66511419 66511419 T C PRKAR1A Intron 0.44 TCGA-BP-5180-01 19 17439020 17439020 G C ANO8 Missense_Mutation p.S726W 0.26 deleterious(0) unknown(0) TCGA-BP-5180-01 19 2933730 2933730 T A ZNF77 Missense_Mutation p.E465D 0.18 deleterious(0.01) possibly_damaging(0.848) TCGA-BP-5180-01 19 2987728 2987728 G A TLE6 Missense_Mutation p.E189K 0.25 tolerated(0.14) probably_damaging(0.953) TCGA-BP-5180-01 19 51135742 51135742 G T SYT3 Missense_Mutation p.P159T 0.30 tolerated(0.12) possibly_damaging(0.477) TCGA-BP-5180-01 1 24766690 24766690 T A NIPAL3 Missense_Mutation p.I41N 0.32 deleterious(0) probably_damaging(1) TCGA-BP-5180-01 1 46184982 46184982 G C IPP Missense_Mutation p.T360S 0.32 tolerated(0.1) benign(0.278) TCGA-BP-5180-01 1 46184983 46184983 T A IPP Missense_Mutation p.T360S 0.32 tolerated(0.1) benign(0.278) TCGA-BP-5180-01 20 32699916 32699916 T A EIF2S2 Translation_Start_Site p.M1? 0.33 tolerated(0.05) benign(0) TCGA-BP-5180-01 20 32699917 32699917 G T EIF2S2 5'UTR 0.31 TCGA-BP-5180-01 20 62129166 62129166 G A EEF1A2 5'UTR 0.34 TCGA-BP-5180-01 21 15561671 15561671 G A LIPI Missense_Mutation p.P60L 0.39 tolerated(0.06) probably_damaging(0.933) TCGA-BP-5180-01 21 36081739 36081739 G C CLIC6 Missense_Mutation p.S601T 0.37 tolerated(0.06) possibly_damaging(0.661) TCGA-BP-5180-01 22 31266569 31266569 A G OSBP2 Missense_Mutation p.E336G 0.37 deleterious(0.01) probably_damaging(0.971) TCGA-BP-5180-01 2 166870294 166870294 G T SCN1A Missense_Mutation p.T1222N 0.38 deleterious(0.03) possibly_damaging(0.824) TCGA-BP-5180-01 2 202050621 202050621 T - CASP10 Frame_Shift_Del p.L42Sfs*3 0.33 TCGA-BP-5180-01 2 208866412 208866412 G A PLEKHM3 5'UTR 0.34 TCGA-BP-5180-01 2 225710302 225710302 A C DOCK10 Missense_Mutation p.Y765D 0.10 deleterious(0) possibly_damaging(0.685) TCGA-BP-5180-01 2 24261024 24261024 G C C2orf44 Silent p.T447T 0.33 TCGA-BP-5180-01 3 10183747 10183747 C A VHL Silent p.S72S 0.65 TCGA-BP-5180-01 3 10183748 10183748 C T VHL Nonsense_Mutation p.Q73* 0.67 TCGA-BP-5180-01 3 128292059 128292059 C T C3orf27 3'UTR 0.44 TCGA-BP-5180-01 3 52637711 52637711 G A PBRM1 Nonsense_Mutation p.Q869* 0.47 TCGA-BP-5180-01 3 77666705 77666705 C G ROBO2 Missense_Mutation p.T1128S 0.60 tolerated(0.27) benign(0.292) TCGA-BP-5180-01 5 140255906 140255906 G A PCDHA12 Missense_Mutation p.M283I 0.36 tolerated_low_confidence(0.07) benign(0.002) TCGA-BP-5180-01 5 34935891 34935892 CG - DNAJC21 Frame_Shift_Del p.R90Lfs*13 0.26 TCGA-BP-5180-01 5 61677018 61677018 C T KIF2A Missense_Mutation p.S696L 0.40 tolerated(0.14) benign(0.379) TCGA-BP-5180-01 6 146875689 146875689 T - RAB32 Frame_Shift_Del p.K210Sfs*2 0.43 TCGA-BP-5180-01 6 31704181 31704181 G C CLIC1 Intron 0.44 TCGA-BP-5180-01 8 48794597 48794597 T C PRKDC Missense_Mutation p.H1612R 0.35 benign(0.012) TCGA-BP-5180-01 8 70533276 70533276 C T SULF1 Nonsense_Mutation p.Q462* 0.29 TCGA-BP-5181-01 10 23003251 23003251 G A PIP4K2A Missense_Mutation p.A2V 0.08 deleterious_low_confidence(0.01) benign(0.038) TCGA-BP-5181-01 10 70045112 70045112 T G PBLD Missense_Mutation p.E249D 0.30 tolerated(0.43) benign(0.012) TCGA-BP-5181-01 10 70742529 70742529 A T DDX21 Missense_Mutation p.K771N 0.31 deleterious_low_confidence(0.03) benign(0.075) TCGA-BP-5181-01 11 100169931 100169931 G A CNTN5 Missense_Mutation p.G808D 0.29 deleterious(0) probably_damaging(1) TCGA-BP-5181-01 11 1159013 1159013 C T MUC5AC Silent p.V397V 0.31 TCGA-BP-5181-01 11 12248593 12248593 G T MICAL2 Missense_Mutation p.G637V 0.25 tolerated(0.07) benign(0.429) TCGA-BP-5181-01 11 35198275 35198275 T A CD44 Missense_Mutation p.F74Y 0.23 deleterious(0) probably_damaging(0.987) TCGA-BP-5181-01 11 59856154 59856154 T C MS4A2 5'UTR 0.24 TCGA-BP-5181-01 11 65622733 65622733 G T CFL1 3'UTR 0.30 TCGA-BP-5181-01 11 77553573 77553573 T C AAMDC Missense_Mutation p.W11R 0.39 deleterious(0) possibly_damaging(0.8) TCGA-BP-5181-01 11 85733457 85733457 T C PICALM Silent p.A135A 0.33 TCGA-BP-5181-01 12 102117531 102117531 T - CHPT1 Frame_Shift_Del p.Q325Kfs*13 0.37 TCGA-BP-5181-01 12 121175723 121175723 A G ACADS Missense_Mutation p.I186V 0.19 deleterious(0.04) benign(0.396) TCGA-BP-5181-01 12 49397588 49397588 T C PRKAG1 Missense_Mutation p.I228V 0.34 tolerated(0.24) benign(0.042) TCGA-BP-5181-01 12 49495053 49495053 G T LMBR1L Silent p.V354V 0.25 TCGA-BP-5181-01 12 51077010 51077010 A G DIP2B Missense_Mutation p.I432M 0.35 deleterious(0) probably_damaging(0.971) TCGA-BP-5181-01 12 57032063 57032063 G T ATP5B 3'UTR 0.36 TCGA-BP-5181-01 12 71139699 71139699 G T PTPRR Silent p.V302V 0.32 TCGA-BP-5181-01 13 33635704 33635704 G A KL Missense_Mutation p.V830M 0.31 deleterious(0) benign(0.442) TCGA-BP-5181-01 13 33635705 33635705 T A KL Missense_Mutation p.V830E 0.31 deleterious(0) probably_damaging(0.95) TCGA-BP-5181-01 14 94044309 94044309 A C UNC79 Missense_Mutation p.N601T 0.31 tolerated(0.05) benign(0.425) TCGA-BP-5181-01 15 34825135 34825135 G A GOLGA8B Missense_Mutation p.A66V 0.22 tolerated(0.33) benign(0.014) TCGA-BP-5181-01 16 2111908 2111908 G A TSC2 Missense_Mutation p.D386N 0.33 tolerated(0.05) benign(0.057) TCGA-BP-5181-01 16 31104693 31104693 T G VKORC1 Missense_Mutation p.I75L 0.30 tolerated(0.23) benign(0.071) TCGA-BP-5181-01 16 49407969 49407969 G A C16orf78 Missense_Mutation p.R40Q 0.33 deleterious(0) probably_damaging(0.992) TCGA-BP-5181-01 16 5081819 5081819 C A NAGPA Silent p.V203V 0.36 TCGA-BP-5181-01 16 57559847 57559847 C G CCDC102A Missense_Mutation p.D260H 0.22 deleterious(0) probably_damaging(0.992) TCGA-BP-5181-01 17 18916793 18916793 C T SLC5A10 Silent p.I367I 0.25 TCGA-BP-5181-01 17 21087063 21087063 G T DHRS7B Missense_Mutation p.V156L 0.31 tolerated(0.66) benign(0.006) TCGA-BP-5181-01 17 41008704 41008704 G A AOC3 3'UTR 0.50 TCGA-BP-5181-01 17 43003485 43003485 G C KIF18B Missense_Mutation p.A841G 0.28 deleterious_low_confidence(0.04) benign(0.26) TCGA-BP-5181-01 17 6690673 6690673 G A FBXO39 Missense_Mutation p.E419K 0.32 tolerated(0.1) benign(0.05) TCGA-BP-5181-01 19 16240402 16240402 G C RAB8A Missense_Mutation p.M173I 0.29 tolerated(0.14) benign(0.001) TCGA-BP-5181-01 19 16240404 16240404 A T RAB8A Missense_Mutation p.D174V 0.30 tolerated(0.09) benign(0.052) TCGA-BP-5181-01 19 38633283 38633283 C A SIPA1L3 Missense_Mutation p.Q1156K 0.30 tolerated(0.68) benign(0.277) TCGA-BP-5181-01 19 4538076 4538079 AGGT - LRG1 Frame_Shift_Del p.N306Rfs*29 0.34 TCGA-BP-5181-01 19 50453230 50453230 C T SIGLEC11 Silent p.K698K 0.29 TCGA-BP-5181-01 19 6216490 6216490 G C MLLT1 Silent p.S411S 0.21 TCGA-BP-5181-01 1 151105972 151105972 G C SEMA6C Missense_Mutation p.P626R 0.82 tolerated(0.5) possibly_damaging(0.904) TCGA-BP-5181-01 1 21936673 21936673 G A RAP1GAP Silent p.F377F 0.36 TCGA-BP-5181-01 1 21936688 21936688 C T RAP1GAP Missense_Mutation p.M372I 0.40 deleterious(0.01) benign(0.384) TCGA-BP-5181-01 1 236195855 236195856 - T NID1 Nonsense_Mutation p.Y461* 0.27 TCGA-BP-5181-01 1 245021386 245021386 G C HNRNPU Missense_Mutation p.T474S 0.32 tolerated(0.09) unknown(0) TCGA-BP-5181-01 1 26584685 26584685 G A CEP85 Silent p.L363L 0.28 TCGA-BP-5181-01 1 36060430 36060430 G T TFAP2E 3'UTR 0.50 TCGA-BP-5181-01 1 53925249 53925249 C T DMRTB1 Silent p.Y41Y 0.27 TCGA-BP-5181-01 21 43281766 43281766 A G PRDM15 Missense_Mutation p.V266A 0.35 deleterious_low_confidence(0.02) benign(0) TCGA-BP-5181-01 21 47776974 47776974 A T PCNT Missense_Mutation p.E674D 0.34 possibly_damaging(0.636) TCGA-BP-5181-01 22 42294664 42294664 A G SREBF2 Missense_Mutation p.I873V 0.34 tolerated(1) benign(0.001) TCGA-BP-5181-01 22 42605832 42605832 G T TCF20 Missense_Mutation p.S1827Y 0.35 benign(0.118) TCGA-BP-5181-01 2 107052648 107052649 - A RGPD3 Frame_Shift_Ins p.R564Kfs*28 0.26 TCGA-BP-5181-01 2 153591609 153591609 C T ARL6IP6 Missense_Mutation p.P186S 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-BP-5181-01 2 167085470 167085470 C T SCN9A Missense_Mutation p.A1302T 0.31 deleterious(0.02) probably_damaging(1) TCGA-BP-5181-01 2 25470606 25470606 A T DNMT3A Missense_Mutation p.F290I 0.43 deleterious(0) benign(0.431) TCGA-BP-5181-01 3 101378747 101378747 A T ZBTB11 Silent p.S642S 0.33 TCGA-BP-5181-01 3 132432049 132432049 T A NPHP3 Missense_Mutation p.N347Y 0.38 tolerated(0.19) benign(0.165) TCGA-BP-5181-01 3 52712614 52712614 C A PBRM1 Splice_Site p.X47_splice 0.53 TCGA-BP-5181-01 3 62498425 62498425 C A CADPS Splice_Site p.X867_splice 0.32 TCGA-BP-5181-01 4 39827052 39827052 A G PDS5A 3'UTR 0.29 TCGA-BP-5181-01 5 151166239 151166239 T C G3BP1 Missense_Mutation p.Y20H 0.31 deleterious(0) probably_damaging(1) TCGA-BP-5181-01 5 3601149 3601149 G A IRX1 Missense_Mutation p.A480T 0.32 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-BP-5181-01 5 39394448 39394448 A G DAB2 5'UTR 0.35 TCGA-BP-5181-01 6 30594918 30594918 G A ATAT1 5'UTR 0.50 TCGA-BP-5181-01 6 31138063 31138063 G C POU5F1 Missense_Mutation p.P112R 0.25 tolerated(0.12) benign(0.32) TCGA-BP-5181-01 7 72436594 72436594 C T TRIM74 Missense_Mutation p.G32D 0.22 deleterious(0) probably_damaging(1) TCGA-BP-5181-01 7 75028312 75028312 G A TRIM73 Missense_Mutation p.G32D 0.27 deleterious(0) probably_damaging(1) TCGA-BP-5181-01 7 76950057 76950057 A C GSAP Missense_Mutation p.L692V 0.34 deleterious(0.02) benign(0.133) TCGA-BP-5181-01 8 123965269 123965269 G A ZHX2 Missense_Mutation p.A507T 0.33 tolerated(0.2) possibly_damaging(0.886) TCGA-BP-5181-01 8 125603469 125603469 G T MTSS1 Silent p.T72T 0.26 TCGA-BP-5181-01 8 12879153 12879153 A G KIAA1456 Missense_Mutation p.E322G 0.38 tolerated(0.24) benign(0.001) TCGA-BP-5181-01 8 41790405 41790405 G T KAT6A Missense_Mutation p.T1778N 0.32 unknown(0) TCGA-BP-5181-01 9 42368569 42368569 G T ANKRD20A2 Missense_Mutation p.C52F 0.12 deleterious(0.02) possibly_damaging(0.639) TCGA-BP-5181-01 9 86292725 86292725 G T UBQLN1 Missense_Mutation p.T341N 0.36 tolerated(0.49) benign(0.086) TCGA-BP-5181-01 9 86900351 86900351 T G SLC28A3 Missense_Mutation p.E519A 0.34 deleterious(0) probably_damaging(0.933) TCGA-BP-5182-01 10 102249094 102249094 T A SEC31B Missense_Mutation p.E1029V 0.22 deleterious(0.03) possibly_damaging(0.623) TCGA-BP-5182-01 10 105133273 105133273 T G TAF5 Missense_Mutation p.F240V 0.23 deleterious(0.02) benign(0.362) TCGA-BP-5182-01 10 298337 298337 C A ZMYND11 Missense_Mutation p.S579Y 0.22 deleterious(0) probably_damaging(0.997) TCGA-BP-5182-01 10 72498659 72498659 G C ADAMTS14 Missense_Mutation p.G557A 0.12 tolerated(0.19) possibly_damaging(0.624) TCGA-BP-5182-01 10 98182331 98182331 G T TLL2 Silent p.T264T 0.31 TCGA-BP-5182-01 11 108383516 108383516 G T EXPH5 Missense_Mutation p.F906L 0.18 tolerated(0.14) benign(0.139) TCGA-BP-5182-01 11 118375278 118375278 G T KMT2A Nonsense_Mutation p.E2891* 0.20 TCGA-BP-5182-01 11 125324081 125324081 T G FEZ1 Missense_Mutation p.N322T 0.19 tolerated(0.19) benign(0.095) TCGA-BP-5182-01 11 3039892 3039892 T G CARS Missense_Mutation p.K495Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-BP-5182-01 11 47193064 47193064 C A ARFGAP2 Missense_Mutation p.R285L 0.21 tolerated(0.11) benign(0.134) TCGA-BP-5182-01 11 62752225 62752225 C T SLC22A6 5'UTR 0.20 TCGA-BP-5182-01 11 66278152 66278152 G A BBS1 Missense_Mutation p.D8N 0.19 tolerated_low_confidence(0.07) unknown(0) TCGA-BP-5182-01 12 57139904 57139904 C T PRIM1 Nonsense_Mutation p.W168* 0.14 TCGA-BP-5182-01 12 58114744 58114744 C T OS9 3'UTR 0.20 TCGA-BP-5182-01 12 70970258 70970258 A - PTPRB Frame_Shift_Del p.S916Pfs*13 0.40 TCGA-BP-5182-01 13 45969907 45969907 A G SLC25A30 3'UTR 0.15 TCGA-BP-5182-01 14 106236319 106236319 A T IGHG3 Silent p.P162P 0.17 TCGA-BP-5182-01 14 106668020 106668020 A T IGHV3-20 Missense_Mutation p.L5Q 0.19 deleterious_low_confidence(0) benign(0.301) TCGA-BP-5182-01 14 23511526 23511526 G A PSMB11 Missense_Mutation p.R31Q 0.20 tolerated(0.49) benign(0.008) TCGA-BP-5182-01 14 31071304 31071304 A T G2E3 Missense_Mutation p.Q326L 0.04 tolerated(0.1) benign(0.024) TCGA-BP-5182-01 14 65482387 65482387 C G FNTB Missense_Mutation p.H109Q 0.14 tolerated(0.12) possibly_damaging(0.752) TCGA-BP-5182-01 15 42512318 42512318 T A TMEM87A Silent p.P473P 0.15 TCGA-BP-5182-01 15 44094073 44094073 T - HYPK 3'UTR 0.28 TCGA-BP-5182-01 15 52702579 52702579 C G MYO5A Missense_Mutation p.G236A 0.06 deleterious(0) possibly_damaging(0.688) TCGA-BP-5182-01 16 28617179 28617179 A T SULT1A1 Missense_Mutation p.M284K 0.10 deleterious(0) probably_damaging(1) TCGA-BP-5182-01 16 30735820 30735820 G C SRCAP Missense_Mutation p.G1692A 0.22 possibly_damaging(0.857) TCGA-BP-5182-01 16 31228342 31228342 G C PYDC1 Missense_Mutation p.T3R 0.29 tolerated(0.57) benign(0) TCGA-BP-5182-01 16 69149149 69149149 T C HAS3 Silent p.L548L 0.15 TCGA-BP-5182-01 16 775560 775560 C T CCDC78 Silent p.R96R 0.19 TCGA-BP-5182-01 16 84691436 84691436 G - KLHL36 Frame_Shift_Del p.V342Cfs*42 0.31 TCGA-BP-5182-01 16 90076458 90076458 T C DBNDD1 5'UTR 0.19 TCGA-BP-5182-01 17 36486397 36486397 G T GPR179 Missense_Mutation p.H1019N 0.20 tolerated(0.81) benign(0.001) TCGA-BP-5182-01 17 39846142 39846142 A T EIF1 Missense_Mutation p.Q48H 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-BP-5182-01 17 5322749 5322749 T A NUP88 Missense_Mutation p.E74D 0.17 tolerated(0.53) benign(0.005) TCGA-BP-5182-01 17 5347555 5347556 AA - DHX33 Frame_Shift_Del p.F698* 0.17 TCGA-BP-5182-01 17 650480 650481 - TG GEMIN4 Frame_Shift_Ins p.K268Tfs*6 0.19 TCGA-BP-5182-01 19 14627721 14627722 - A DNAJB1 Frame_Shift_Ins p.G117Wfs*12 0.21 TCGA-BP-5182-01 19 1467881 1467881 C G APC2 Missense_Mutation p.H1527Q 0.24 benign(0.003) TCGA-BP-5182-01 19 14952548 14952548 C T OR7A10 Missense_Mutation p.A48T 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.457) TCGA-BP-5182-01 19 17945490 17945490 G T JAK3 Missense_Mutation p.P747H 0.11 deleterious(0) probably_damaging(0.988) TCGA-BP-5182-01 19 49671869 49671880 CCTGGACTACAA - TRPM4 In_Frame_Del p.L225_N228del 0.26 TCGA-BP-5182-01 1 10166557 10166557 G A UBE4B Missense_Mutation p.R371K 0.27 tolerated_low_confidence(0.26) benign(0.067) TCGA-BP-5182-01 1 111734927 111734927 C T DENND2D Silent p.Q269Q 0.26 TCGA-BP-5182-01 1 154965555 154965555 A G FLAD1 3'UTR 0.12 TCGA-BP-5182-01 1 16199600 16199600 C T SPEN Nonsense_Mutation p.R125* 0.15 TCGA-BP-5182-01 1 200562851 200562851 C T KIF14 Missense_Mutation p.E866K 0.19 deleterious(0.01) probably_damaging(0.948) TCGA-BP-5182-01 1 200959172 200959172 C T KIF21B Splice_Site p.X1011_splice 0.22 TCGA-BP-5182-01 1 211545849 211545849 G A TRAF5 Silent p.K493K 0.17 TCGA-BP-5182-01 1 22032286 22032286 G A USP48 Missense_Mutation p.A773V 0.21 tolerated(0.8) benign(0.001) TCGA-BP-5182-01 1 26231194 26231194 G T STMN1 5'UTR 0.20 TCGA-BP-5182-01 1 32678141 32678141 C G DCDC2B Missense_Mutation p.T193S 0.20 tolerated(1) benign(0.002) TCGA-BP-5182-01 1 7831384 7831384 C A VAMP3 5'UTR 0.16 TCGA-BP-5182-01 1 9416147 9416147 T C SPSB1 Missense_Mutation p.F66S 0.18 tolerated(0.13) possibly_damaging(0.832) TCGA-BP-5182-01 20 57251366 57251366 G T STX16 3'UTR 0.18 TCGA-BP-5182-01 21 46101867 46101867 C T KRTAP12-1 Missense_Mutation p.V58M 0.07 tolerated(0.06) possibly_damaging(0.867) TCGA-BP-5182-01 21 46642103 46642103 C A ADARB1 Silent p.L739L 0.16 TCGA-BP-5182-01 22 19184099 19184099 C A CLTCL1 Missense_Mutation p.M1314I 0.25 deleterious(0.03) benign(0.426) TCGA-BP-5182-01 22 31674310 31674310 C A LIMK2 3'Flank 0.19 TCGA-BP-5182-01 22 38201647 38201647 C T H1F0 Silent p.I32I 0.19 TCGA-BP-5182-01 22 38690502 38690502 C T CSNK1E Silent p.R308R 0.16 TCGA-BP-5182-01 2 152551064 152551064 G T NEB Missense_Mutation p.A585D 0.21 probably_damaging(0.999) TCGA-BP-5182-01 2 211441087 211441087 C G CPS1 Missense_Mutation p.T91S 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-BP-5182-01 2 223795455 223795455 G A ACSL3 Missense_Mutation p.D553N 0.18 deleterious(0.04) probably_damaging(1) TCGA-BP-5182-01 2 69045086 69045086 C A ARHGAP25 Silent p.L321L 0.13 TCGA-BP-5182-01 2 69046267 69046267 T - ARHGAP25 Frame_Shift_Del p.I339Tfs*4 0.21 TCGA-BP-5182-01 2 86325787 86325787 G A POLR1A Silent p.L127L 0.20 TCGA-BP-5182-01 3 10188240 10188240 T A VHL Missense_Mutation p.L128H 0.26 deleterious(0) probably_damaging(1) TCGA-BP-5182-01 3 112724334 112724334 C A C3orf17 3'UTR 0.15 TCGA-BP-5182-01 3 114058081 114058081 A G ZBTB20 Missense_Mutation p.I666T 0.22 tolerated(0.05) benign(0.26) TCGA-BP-5182-01 3 128753037 128753037 G T EFCC1 Missense_Mutation p.M438I 0.16 tolerated(0.13) benign(0.022) TCGA-BP-5182-01 3 36872739 36872739 C A TRANK1 Missense_Mutation p.G2735C 0.25 tolerated_low_confidence(0.14) benign(0.013) TCGA-BP-5182-01 3 43389698 43389698 C T SNRK Silent p.L649L 0.29 TCGA-BP-5182-01 3 49212294 49212294 G A KLHDC8B Missense_Mutation p.E221K 0.25 deleterious(0.02) benign(0.438) TCGA-BP-5182-01 3 52443892 52443892 C T BAP1 Translation_Start_Site p.M1? 0.32 tolerated(0.15) benign(0.012) TCGA-BP-5182-01 4 109681436 109681436 G T ETNPPL Nonsense_Mutation p.S28* 0.19 TCGA-BP-5182-01 4 164087855 164087855 C A NAF1 Missense_Mutation p.A9S 0.11 tolerated_low_confidence(0.07) probably_damaging(0.982) TCGA-BP-5182-01 4 185138820 185138820 T C ENPP6 Silent p.K51K 0.14 TCGA-BP-5182-01 4 38799865 38799865 G T TLR1 Missense_Mutation p.F196L 0.20 tolerated(0.56) possibly_damaging(0.606) TCGA-BP-5182-01 4 88055842 88055842 T G AFF1 Missense_Mutation p.N1177K 0.05 deleterious(0) unknown(0) TCGA-BP-5182-01 5 134153324 134153324 G T DDX46 Nonsense_Mutation p.E917* 0.30 TCGA-BP-5182-01 5 138724269 138724269 C T MZB1 Nonsense_Mutation p.W61* 0.25 TCGA-BP-5182-01 5 140166338 140166338 G T PCDHA1 Nonsense_Mutation p.E155* 0.06 TCGA-BP-5182-01 6 31930533 31930533 G A SKIV2L Silent p.E418E 0.19 TCGA-BP-5182-01 6 42600357 42600357 G A UBR2 Missense_Mutation p.R450K 0.04 tolerated(0.31) benign(0.001) TCGA-BP-5182-01 6 56471874 56471874 G T DST Intron 0.22 TCGA-BP-5182-01 7 127670481 127670481 C T LRRC4 Silent p.Q71Q 0.17 TCGA-BP-5182-01 7 128483008 128483008 G - FLNC Frame_Shift_Del 0.26 TCGA-BP-5182-01 7 71177153 71177153 G A WBSCR17 3'UTR 0.17 TCGA-BP-5182-01 9 117783425 117783425 G A TNC 3'UTR 0.13 TCGA-BP-5183-01 10 116038497 116038497 C - VWA2 Frame_Shift_Del p.C242Vfs*43 0.36 TCGA-BP-5183-01 10 27294432 27294432 T A ANKRD26 3'UTR 0.28 TCGA-BP-5183-01 10 50833615 50833615 C T CHAT Silent p.P283P 0.29 TCGA-BP-5183-01 11 59837725 59837725 T C MS4A3 3'UTR 0.41 TCGA-BP-5183-01 12 54676248 54676248 T G HNRNPA1 Silent p.A187A 0.05 TCGA-BP-5183-01 13 52709999 52709999 C T NEK3 Missense_Mutation p.G375D 0.27 tolerated(0.06) possibly_damaging(0.721) TCGA-BP-5183-01 13 96086287 96086287 T - CLDN10 Frame_Shift_Del p.I67Tfs*4 0.25 TCGA-BP-5183-01 14 107013080 107013080 C T IGHV3-49 Missense_Mutation p.S72N 0.50 tolerated_low_confidence(0.8) benign(0.003) TCGA-BP-5183-01 15 70961379 70961380 - TA UACA Frame_Shift_Ins p.L549Tfs*2 0.29 TCGA-BP-5183-01 16 20331781 20331781 G A GP2 Nonsense_Mutation p.Q224* 0.36 TCGA-BP-5183-01 16 3777576 3777576 G A CREBBP 3'UTR 0.48 TCGA-BP-5183-01 17 7416113 7416113 G A POLR2A Missense_Mutation p.A1543T 0.28 benign(0.015) TCGA-BP-5183-01 17 7416181 7416181 G A POLR2A Nonsense_Mutation p.W1565* 0.31 TCGA-BP-5183-01 17 74392558 74392558 G T UBE2O Silent p.I820I 0.29 TCGA-BP-5183-01 17 8273274 8273274 T A KRBA2 Missense_Mutation p.K219N 0.33 tolerated(0.08) probably_damaging(0.953) TCGA-BP-5183-01 17 9153958 9153958 C T STX8 Missense_Mutation p.M216I 0.31 tolerated(0.12) benign(0.107) TCGA-BP-5183-01 18 66348333 66348333 G A TMX3 Missense_Mutation p.P307L 0.33 deleterious(0) probably_damaging(0.999) TCGA-BP-5183-01 19 10602352 10602352 A G KEAP1 Missense_Mutation p.M409T 0.38 deleterious(0) possibly_damaging(0.57) TCGA-BP-5183-01 19 22270900 22270900 C A ZNF257 Silent p.G116G 0.27 TCGA-BP-5183-01 19 37428114 37428114 G A ZNF568 Missense_Mutation p.E110K 0.27 tolerated(0.12) benign(0.007) TCGA-BP-5183-01 19 3813939 3813939 C G ZFR2 Missense_Mutation p.E707D 0.29 deleterious(0.03) possibly_damaging(0.484) TCGA-BP-5183-01 19 3813948 3813948 G T ZFR2 Silent p.T704T 0.29 TCGA-BP-5183-01 19 43376181 43376181 G A PSG1 Silent p.P149P 0.36 TCGA-BP-5183-01 19 49797187 49797187 C T SLC6A16 Silent p.L505L 0.30 TCGA-BP-5183-01 19 9525150 9525150 T - ZNF266 Frame_Shift_Del p.T151Qfs*25 0.27 TCGA-BP-5183-01 1 162324977 162324977 G T NOS1AP Missense_Mutation p.G199V 0.32 tolerated(0.35) benign(0.009) TCGA-BP-5183-01 1 186302399 186302399 T C TPR Silent p.T1770T 0.31 TCGA-BP-5183-01 1 213349818 213349818 C G RPS6KC1 Missense_Mutation p.L343V 0.33 tolerated(0.14) probably_damaging(0.983) TCGA-BP-5183-01 1 228285075 228285075 A C ARF1 Missense_Mutation p.I61L 0.28 deleterious_low_confidence(0.04) benign(0.264) TCGA-BP-5183-01 1 25549846 25549846 T A SYF2 Missense_Mutation p.N215Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-BP-5183-01 1 26514973 26514973 G A CNKSR1 Silent p.E523E 0.33 TCGA-BP-5183-01 1 70611331 70611331 G C LRRC40 3'UTR 0.40 TCGA-BP-5183-01 1 76254935 76254935 G C RABGGTB Missense_Mutation p.R68T 0.27 deleterious(0.04) benign(0.016) TCGA-BP-5183-01 20 46268421 46268421 C G NCOA3 Missense_Mutation p.N936K 0.31 tolerated(0.24) benign(0.028) TCGA-BP-5183-01 21 35254745 35254745 A - ITSN1 Frame_Shift_Del p.M1515Cfs*8 0.34 TCGA-BP-5183-01 21 38385914 38385914 G C RIPPLY3 Missense_Mutation p.V79L 0.27 deleterious(0.05) benign(0.014) TCGA-BP-5183-01 22 17690279 17690279 G A CECR1 Nonsense_Mutation p.Q97* 0.36 TCGA-BP-5183-01 22 42383654 42383654 G T SEPT3 Nonsense_Mutation p.E148* 0.32 TCGA-BP-5183-01 2 176972132 176972132 C T HOXD11 Missense_Mutation p.P17S 0.17 deleterious(0) probably_damaging(0.972) TCGA-BP-5183-01 2 204281636 204281636 G T ABI2 Missense_Mutation p.D362Y 0.24 deleterious(0) benign(0.336) TCGA-BP-5183-01 2 231682474 231682474 C T CAB39 Silent p.L233L 0.28 TCGA-BP-5183-01 2 235949909 235949910 CA - SH3BP4 Frame_Shift_Del p.Q166Dfs*17 0.29 TCGA-BP-5183-01 2 237489349 237489349 T A ACKR3 Missense_Mutation p.C81S 0.30 deleterious(0.01) benign(0.186) TCGA-BP-5183-01 2 61709537 61709537 A G XPO1 Missense_Mutation p.S984P 0.22 deleterious(0.02) benign(0.049) TCGA-BP-5183-01 3 10188248 10188248 A - VHL Frame_Shift_Del p.N131Tfs*28 0.36 TCGA-BP-5183-01 3 195245886 195245886 T A PPP1R2 Missense_Mutation p.D167V 0.04 tolerated(0.08) probably_damaging(0.933) TCGA-BP-5183-01 3 37821430 37821442 ACTGTAACTTTAG - ITGA9 Frame_Shift_Del p.H902Lfs*11 0.45 TCGA-BP-5183-01 3 52651382 52651383 - A PBRM1 Frame_Shift_Ins p.E572* 0.35 TCGA-BP-5183-01 5 130841087 130841087 T G RAPGEF6 Silent p.G357G 0.21 TCGA-BP-5183-01 5 180651908 180651909 - AAC TRIM41 Intron 0.58 TCGA-BP-5183-01 6 42232448 42232448 G A TRERF1 Silent p.L543L 0.34 TCGA-BP-5183-01 7 44104731 44104735 TAGTA - PGAM2 Frame_Shift_Del p.Y132Qfs*4 0.32 TCGA-BP-5183-01 8 113650949 113650949 C A CSMD3 Nonsense_Mutation p.E1168* 0.23 TCGA-BP-5183-01 8 113841930 113841930 C A CSMD3 Missense_Mutation p.R615M 0.05 deleterious(0) possibly_damaging(0.696) TCGA-BP-5183-01 8 11710155 11710155 C A CTSB Missense_Mutation p.C59F 0.28 tolerated(0.07) benign(0.265) TCGA-BP-5183-01 8 124204063 124204063 T C FAM83A Silent p.D167D 0.20 TCGA-BP-5183-01 8 25167945 25167945 C G DOCK5 Silent p.L405L 0.30 TCGA-BP-5183-01 8 6302771 6302771 T G MCPH1 Missense_Mutation p.C510G 0.33 tolerated(0.43) benign(0.001) TCGA-BP-5183-01 9 14748627 14748627 A - FREM1 Frame_Shift_Del p.P1857Lfs*47 0.40 TCGA-BP-5184-01 11 105842733 105842733 G A GRIA4 Missense_Mutation p.G796E 0.31 deleterious(0.02) probably_damaging(0.983) TCGA-BP-5184-01 11 111749783 111749783 T C FDXACB1 Missense_Mutation p.D25G 0.19 tolerated(0.42) benign(0.032) TCGA-BP-5184-01 11 134062791 134062791 C T NCAPD3 Missense_Mutation p.C613Y 0.31 tolerated(0.08) benign(0.002) TCGA-BP-5184-01 11 5247899 5247899 C A HBB Missense_Mutation p.G75C 0.27 deleterious(0) possibly_damaging(0.755) TCGA-BP-5184-01 11 64875906 64875906 C A VPS51 Silent p.A321A 0.31 TCGA-BP-5184-01 11 82877723 82877723 A G PCF11 Missense_Mutation p.K595R 0.25 tolerated(0.17) probably_damaging(0.937) TCGA-BP-5184-01 12 110226511 110226511 G A TRPV4 Silent p.S634S 0.23 TCGA-BP-5184-01 12 110226512 110226512 G C TRPV4 Missense_Mutation p.S634C 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-BP-5184-01 12 6981334 6981335 AG - SPSB2 Intron 0.26 TCGA-BP-5184-01 13 46584527 46584527 A G ZC3H13 Silent p.D234D 0.08 TCGA-BP-5184-01 14 30066775 30066775 C A PRKD1 Missense_Mutation p.D786Y 0.29 deleterious(0) probably_damaging(0.971) TCGA-BP-5184-01 15 40627240 40627240 A G C15orf52 3'UTR 0.22 TCGA-BP-5184-01 15 85326331 85326331 G T ZNF592 Missense_Mutation p.S142I 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-BP-5184-01 16 58032227 58032227 G A ZNF319 5'UTR 0.25 TCGA-BP-5184-01 17 60837249 60837249 C A MARCH10 Missense_Mutation p.S110I 0.07 deleterious(0) benign(0.278) TCGA-BP-5184-01 17 77082460 77082460 G T ENGASE 3'UTR 0.26 TCGA-BP-5184-01 18 56205081 56205081 C T ALPK2 Missense_Mutation p.E780K 0.26 deleterious(0.04) possibly_damaging(0.56) TCGA-BP-5184-01 19 44273604 44273604 C T KCNN4 Missense_Mutation p.A347T 0.20 deleterious(0) benign(0.373) TCGA-BP-5184-01 19 9968474 9968475 - AT OLFM2 Frame_Shift_Ins p.V93Mfs*31 0.21 TCGA-BP-5184-01 1 150482765 150482769 TAACC - ECM1 Intron 0.33 TCGA-BP-5184-01 1 154904889 154904889 A T PMVK Missense_Mutation p.L33H 0.10 deleterious(0) probably_damaging(0.993) TCGA-BP-5184-01 1 43829743 43829743 C T ELOVL1 Silent p.Q228Q 0.23 TCGA-BP-5184-01 1 65117974 65117974 T C CACHD1 Silent p.T456T 0.20 TCGA-BP-5184-01 20 31946924 31946924 G A CDK5RAP1 Silent p.T563T 0.14 TCGA-BP-5184-01 20 62571243 62571243 T - UCKL1 3'UTR 0.18 TCGA-BP-5184-01 2 163253263 163253263 T G KCNH7 Missense_Mutation p.H867P 0.28 deleterious(0) benign(0.071) TCGA-BP-5184-01 2 175614765 175614767 AAC - CHRNA1 In_Frame_Del p.F329del 0.28 TCGA-BP-5184-01 3 10188284 10188287 GACG - VHL Frame_Shift_Del p.G144Sfs*14 0.35 TCGA-BP-5184-01 3 52613123 52613123 A - PBRM1 Frame_Shift_Del p.G1136Afs*57 0.29 TCGA-BP-5184-01 4 83839957 83839957 T A THAP9 Missense_Mutation p.D864E 0.27 tolerated(1) benign(0) TCGA-BP-5184-01 4 89425491 89425491 C T HERC5 Silent p.I897I 0.08 TCGA-BP-5184-01 5 139232130 139232130 G A NRG2 Silent p.N477N 0.26 TCGA-BP-5184-01 6 112671861 112671861 T A RFPL4B 3'UTR 0.50 TCGA-BP-5184-01 6 145103091 145103091 T A UTRN Missense_Mutation p.I2889N 0.27 deleterious(0) benign(0.311) TCGA-BP-5184-01 6 167721380 167721380 T C UNC93A Missense_Mutation p.W364R 0.23 deleterious(0) probably_damaging(0.966) TCGA-BP-5184-01 7 87183102 87183102 T C ABCB1 Missense_Mutation p.E325G 0.28 tolerated(0.08) benign(0.007) TCGA-BP-5184-01 8 110567065 110567065 G A EBAG9 Silent p.L90L 0.10 TCGA-BP-5184-01 8 143412303 143412303 G A TSNARE1 Silent p.S284S 0.21 TCGA-BP-5184-01 8 68007701 68007701 A T CSPP1 Missense_Mutation p.Q228H 0.26 deleterious(0.02) benign(0.031) TCGA-BP-5184-01 X 118370278 118370278 C T PGRMC1 5'UTR 0.48 TCGA-BP-5184-01 X 137715047 137715047 G A FGF13 Silent p.N244N 0.53 TCGA-BP-5185-01 10 104111114 104111114 C G GBF1 Missense_Mutation p.L133V 0.21 deleterious(0) probably_damaging(0.979) TCGA-BP-5185-01 10 28270411 28270411 T G ARMC4 Missense_Mutation p.E307A 0.52 deleterious(0.05) benign(0.41) TCGA-BP-5185-01 10 70733381 70733381 C G DDX21 Missense_Mutation p.H543Q 0.04 tolerated(0.46) benign(0.007) TCGA-BP-5185-01 11 110451607 110451607 G T ARHGAP20 Missense_Mutation p.T688K 0.30 tolerated(0.1) benign(0.398) TCGA-BP-5185-01 11 118849549 118849549 C T FOXR1 Missense_Mutation p.P40L 0.35 tolerated(0.13) benign(0.06) TCGA-BP-5185-01 11 118849551 118849551 A T FOXR1 Missense_Mutation p.N41Y 0.35 tolerated(0.17) benign(0.01) TCGA-BP-5185-01 11 17531374 17531374 C T USH1C Silent p.G514G 0.35 TCGA-BP-5185-01 11 47833875 47833875 T - NUP160 Frame_Shift_Del p.M687Wfs*11 0.28 TCGA-BP-5185-01 11 5020376 5020376 C T OR51L1 Missense_Mutation p.S55F 0.07 deleterious(0) benign(0.44) TCGA-BP-5185-01 11 5443672 5443672 C G OR51Q1 Missense_Mutation p.P81R 0.41 deleterious(0.01) probably_damaging(1) TCGA-BP-5185-01 11 6519865 6519865 G C DNHD1 Missense_Mutation p.L140F 0.39 probably_damaging(0.974) TCGA-BP-5185-01 11 76893001 76893001 T G MYO7A Missense_Mutation p.L970R 0.37 deleterious(0) probably_damaging(0.977) TCGA-BP-5185-01 12 100042363 100042363 G T FAM71C Missense_Mutation p.Q137H 0.40 deleterious(0) probably_damaging(0.943) TCGA-BP-5185-01 12 10584769 10584769 C G KLRC2 Missense_Mutation p.G174R 0.32 tolerated(0.06) possibly_damaging(0.897) TCGA-BP-5185-01 12 113618759 113618759 C T DDX54 Silent p.K93K 0.30 TCGA-BP-5185-01 12 52432532 52432532 A C NR4A1 Intron 0.33 TCGA-BP-5185-01 12 58207208 58207208 T C AVIL Splice_Site p.X48_splice 0.38 TCGA-BP-5185-01 12 6440021 6440021 G A TNFRSF1A Missense_Mutation p.S208L 0.38 deleterious(0.04) benign(0.118) TCGA-BP-5185-01 13 26923220 26923220 G A CDK8 Silent p.E72E 0.46 TCGA-BP-5185-01 13 41704758 41704758 G A KBTBD6 Silent p.L630L 0.08 TCGA-BP-5185-01 13 53035798 53035798 A T CKAP2 Silent p.T280T 0.51 TCGA-BP-5185-01 13 97484944 97484944 A G HS6ST3 Missense_Mutation p.Y303C 0.06 deleterious(0.01) probably_damaging(0.975) TCGA-BP-5185-01 14 59834206 59834206 C A DAAM1 Missense_Mutation p.F972L 0.19 deleterious(0.02) probably_damaging(0.987) TCGA-BP-5185-01 15 29400578 29400578 G A APBA2 Missense_Mutation p.V675M 0.41 deleterious(0) probably_damaging(0.955) TCGA-BP-5185-01 15 40266120 40266120 C G EIF2AK4 Intron 0.31 TCGA-BP-5185-01 15 41762545 41762545 A G RTF1 Missense_Mutation p.K327R 0.34 tolerated(0.23) benign(0.058) TCGA-BP-5185-01 15 65959941 65959942 TC - DENND4A Frame_Shift_Del p.E1695Kfs*2 0.26 TCGA-BP-5185-01 15 99511854 99511854 A T PGPEP1L Silent p.P148P 0.48 TCGA-BP-5185-01 16 3713671 3713671 G C TRAP1 Intron 0.33 TCGA-BP-5185-01 16 51170989 51170989 A G SALL1 3'UTR 0.34 TCGA-BP-5185-01 16 58594198 58594198 T G CNOT1 Missense_Mutation p.K683T 0.51 deleterious(0.01) benign(0.147) TCGA-BP-5185-01 16 88744902 88744902 G A SNAI3 Missense_Mutation p.S278F 0.23 deleterious(0) possibly_damaging(0.486) TCGA-BP-5185-01 17 10436864 10436864 C T MYH2 Missense_Mutation p.D756N 0.06 deleterious(0.03) benign(0.13) TCGA-BP-5185-01 17 26920003 26920003 A G SPAG5 Missense_Mutation p.S87P 0.35 tolerated_low_confidence(0.05) possibly_damaging(0.898) TCGA-BP-5185-01 17 39279933 39279933 A T KRTAP4-12 Missense_Mutation p.S148T 0.43 tolerated(0.15) unknown(0) TCGA-BP-5185-01 17 60038959 60038959 C G MED13 Missense_Mutation p.R1749T 0.40 deleterious(0) benign(0.038) TCGA-BP-5185-01 17 70119068 70119068 T C SOX9 Missense_Mutation p.S214P 0.42 tolerated(0.24) possibly_damaging(0.543) TCGA-BP-5185-01 17 73814848 73814848 A C UNK Silent p.A499A 0.32 TCGA-BP-5185-01 17 74077512 74077512 A G EXOC7 3'Flank 0.32 TCGA-BP-5185-01 18 44555134 44555134 G C TCEB3C Nonsense_Mutation p.Y360* 0.04 TCGA-BP-5185-01 18 59949659 59949659 C G KIAA1468 Missense_Mutation p.P1079A 0.42 tolerated(0.09) probably_damaging(1) TCGA-BP-5185-01 18 9256041 9256042 AA - ANKRD12 Frame_Shift_Del p.K926Rfs*10 0.32 TCGA-BP-5185-01 19 54313706 54313706 C A NLRP12 Missense_Mutation p.V403F 0.35 deleterious(0) probably_damaging(0.94) TCGA-BP-5185-01 19 54313711 54313711 C T NLRP12 Missense_Mutation p.C401Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-BP-5185-01 19 8175825 8175825 G A FBN3 Missense_Mutation p.L1413F 0.39 tolerated(0.06) benign(0.02) TCGA-BP-5185-01 1 110031529 110031529 G C ATXN7L2 Missense_Mutation p.V282L 0.20 tolerated(0.61) probably_damaging(0.999) TCGA-BP-5185-01 1 145039629 145039629 G A PDE4DIP 5'UTR 0.08 TCGA-BP-5185-01 1 151259347 151259347 C G ZNF687 Missense_Mutation p.P194A 0.28 tolerated(0.52) benign(0.002) TCGA-BP-5185-01 1 152286259 152286260 TG - FLG Frame_Shift_Del p.Q368Dfs*6 0.44 TCGA-BP-5185-01 1 154229659 154229659 A C UBAP2L Missense_Mutation p.S760R 0.22 deleterious(0) unknown(0) TCGA-BP-5185-01 1 175375877 175375877 G A TNR 5'UTR 0.22 TCGA-BP-5185-01 1 203148901 203148901 G C CHI3L1 Missense_Mutation p.S333R 0.47 deleterious(0) probably_damaging(0.999) TCGA-BP-5185-01 1 22920016 22920016 G C EPHA8 Splice_Site p.X481_splice 0.30 TCGA-BP-5185-01 1 28661113 28661113 T A MED18 Missense_Mutation p.Y87N 0.49 deleterious(0) probably_damaging(0.997) TCGA-BP-5185-01 1 33415334 33415334 A G RNF19B Missense_Mutation p.L226P 0.14 deleterious(0) probably_damaging(0.977) TCGA-BP-5185-01 1 64059088 64059088 G C PGM1 5'UTR 0.17 TCGA-BP-5185-01 22 24463082 24463082 G C CABIN1 Missense_Mutation p.E728Q 0.28 tolerated(0.23) possibly_damaging(0.905) TCGA-BP-5185-01 22 30952062 30952062 C - GAL3ST1 Frame_Shift_Del p.S51Pfs*12 0.40 TCGA-BP-5185-01 22 31850208 31850208 G A EIF4ENIF1 Silent p.D478D 0.35 TCGA-BP-5185-01 2 141643767 141643767 G A LRP1B Missense_Mutation p.L1302F 0.33 possibly_damaging(0.587) TCGA-BP-5185-01 2 159499100 159499101 - GCAAGT PKP4 In_Frame_Ins p.K601_S602insCK 0.32 TCGA-BP-5185-01 2 16085629 16085629 G A MYCN Missense_Mutation p.E269K 0.39 deleterious(0.01) probably_damaging(0.973) TCGA-BP-5185-01 2 179428026 179428026 T C TTN Silent p.E27611E 0.38 TCGA-BP-5185-01 2 179441832 179441832 A T TTN Missense_Mutation p.L23077H 0.39 TCGA-BP-5185-01 2 179616303 179616303 T G TTN Intron 0.13 TCGA-BP-5185-01 2 185801058 185801058 G C ZNF804A Missense_Mutation p.C312S 0.15 tolerated(0.65) possibly_damaging(0.628) TCGA-BP-5185-01 2 234431973 234431973 C T USP40 Missense_Mutation p.A693T 0.40 tolerated(0.11) benign(0.027) TCGA-BP-5185-01 2 236706509 236706509 G A AGAP1 Silent p.V260V 0.37 TCGA-BP-5185-01 2 44428909 44428909 C A PPM1B Missense_Mutation p.R191S 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-BP-5185-01 3 10188207 10188207 G A VHL Nonsense_Mutation p.W117* 0.59 TCGA-BP-5185-01 3 132419270 132419270 A G NPHP3 Missense_Mutation p.S551P 0.64 tolerated(0.14) benign(0.035) TCGA-BP-5185-01 3 141162598 141162598 G A ZBTB38 Silent p.G456G 0.05 TCGA-BP-5185-01 3 142184019 142184019 A T ATR Missense_Mutation p.F2321I 0.59 tolerated(0.42) benign(0.007) TCGA-BP-5185-01 3 183029534 183029534 C T MCF2L2 Silent p.Q260Q 0.05 TCGA-BP-5185-01 3 52584552 52584552 A - PBRM1 Frame_Shift_Del p.F1487Lfs*2 0.55 TCGA-BP-5185-01 3 52854657 52854657 G - ITIH4 Frame_Shift_Del p.M609Wfs*50 0.44 TCGA-BP-5185-01 4 153831304 153831304 T - ARFIP1 Frame_Shift_Del p.K353Nfs*7 0.18 TCGA-BP-5185-01 4 164050071 164050071 G T NAF1 Missense_Mutation p.S488Y 0.53 deleterious_low_confidence(0) possibly_damaging(0.687) TCGA-BP-5185-01 4 83719576 83719576 G A SCD5 Missense_Mutation p.R39C 0.53 deleterious(0.01) benign(0.183) TCGA-BP-5185-01 5 114878826 114878826 G A FEM1C Missense_Mutation p.A122V 0.40 deleterious(0) probably_damaging(1) TCGA-BP-5185-01 5 115298600 115298600 C G AQPEP Missense_Mutation p.L96V 0.48 tolerated(0.35) benign(0.143) TCGA-BP-5185-01 5 140346845 140346845 C A PCDHAC2 Missense_Mutation p.A165E 0.35 deleterious(0) possibly_damaging(0.737) TCGA-BP-5185-01 5 140798869 140798869 C G PCDHGB7 Missense_Mutation p.F481L 0.36 tolerated(1) benign(0.002) TCGA-BP-5185-01 5 140870296 140870296 C T PCDHGC5 Nonsense_Mutation p.Q497* 0.38 TCGA-BP-5185-01 5 179193074 179193074 C G MAML1 Missense_Mutation p.R355G 0.41 tolerated(0.53) benign(0) TCGA-BP-5185-01 6 12164030 12164030 T C HIVEP1 Missense_Mutation p.I2498T 0.15 deleterious(0) probably_damaging(0.938) TCGA-BP-5185-01 6 150164137 150164137 C T LRP11 Missense_Mutation p.A299T 0.15 tolerated(0.61) benign(0.002) TCGA-BP-5185-01 6 150164138 150164138 G A LRP11 Silent p.R298R 0.15 TCGA-BP-5185-01 6 151939400 151939400 A G CCDC170 3'UTR 0.62 TCGA-BP-5185-01 6 29691207 29691207 A G HLA-F 5'UTR 0.28 TCGA-BP-5185-01 6 35393878 35393878 G C PPARD 3'UTR 0.11 TCGA-BP-5185-01 6 4892566 4892566 G A CDYL Missense_Mutation p.G215D 0.44 tolerated(0.44) benign(0.011) TCGA-BP-5185-01 7 128407619 128407619 G T CALU Missense_Mutation p.K259N 0.43 tolerated(0.21) possibly_damaging(0.65) TCGA-BP-5185-01 7 129938646 129938646 A T CPA4 Silent p.L43L 0.29 TCGA-BP-5185-01 7 138794026 138794026 C T ZC3HAV1 Missense_Mutation p.G18R 0.37 deleterious(0.04) benign(0.004) TCGA-BP-5185-01 7 5632742 5632742 G C FSCN1 Missense_Mutation p.A59P 0.25 deleterious(0.03) probably_damaging(0.942) TCGA-BP-5185-01 7 81714199 81714200 - AT CACNA2D1 Frame_Shift_Ins p.E182Mfs*9 0.11 TCGA-BP-5185-01 7 82544733 82544733 T C PCLO Missense_Mutation p.K4190R 0.45 unknown(0) TCGA-BP-5185-01 8 43218201 43218201 C T AC022616.1 3'Flank 0.44 TCGA-BP-5185-01 9 129595818 129595818 G - ZBTB43 Frame_Shift_Del p.A344Qfs*11 0.34 TCGA-BP-5185-01 9 139118696 139118696 G A QSOX2 Missense_Mutation p.A118V 0.41 deleterious(0.03) possibly_damaging(0.734) TCGA-BP-5185-01 9 32488009 32488009 C T DDX58 Silent p.P382P 0.48 TCGA-BP-5185-01 9 5185530 5185530 C T INSL6 Missense_Mutation p.D25N 0.24 tolerated(0.14) possibly_damaging(0.821) TCGA-BP-5186-01 10 15151770 15151770 A T NMT2 Missense_Mutation p.F469L 0.22 deleterious(0) probably_damaging(0.996) TCGA-BP-5186-01 11 12316166 12316166 T G MICALCL Silent p.L396L 0.07 TCGA-BP-5186-01 11 130066577 130066577 T A ST14 Missense_Mutation p.S446T 0.28 deleterious(0.01) possibly_damaging(0.589) TCGA-BP-5186-01 11 2323364 2323364 G C TSPAN32 5'UTR 0.33 TCGA-BP-5186-01 11 65266303 65266305 TTC - MALAT1 RNA 0.28 TCGA-BP-5186-01 11 94731985 94731985 T A KDM4D Silent p.A483A 0.17 TCGA-BP-5186-01 12 117013678 117013678 C T MAP1LC3B2 5'UTR 0.18 TCGA-BP-5186-01 12 130648146 130648146 G A FZD10 Missense_Mutation p.S220N 0.26 deleterious(0.02) possibly_damaging(0.583) TCGA-BP-5186-01 13 114009706 114009706 T C GRTP1 Missense_Mutation p.N91S 0.06 tolerated(0.2) benign(0.262) TCGA-BP-5186-01 13 37678647 37678647 A G CSNK1A1L Silent p.C249C 0.10 TCGA-BP-5186-01 14 59113389 59113389 C A DACT1 Missense_Mutation p.A683D 0.31 tolerated(0.09) probably_damaging(0.999) TCGA-BP-5186-01 14 61113202 61113203 - T SIX1 Frame_Shift_Ins p.E219Gfs*87 0.09 TCGA-BP-5186-01 17 35545400 35545400 G T ACACA Missense_Mutation p.S1531R 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-BP-5186-01 19 10663721 10663721 C A ATG4D Missense_Mutation p.S468Y 0.25 deleterious(0) possibly_damaging(0.723) TCGA-BP-5186-01 19 40420153 40420153 G C FCGBP Silent p.V947V 0.18 TCGA-BP-5186-01 19 45465320 45465320 G A CLPTM1 Missense_Mutation p.G58D 0.25 tolerated(0.06) benign(0.302) TCGA-BP-5186-01 19 47285647 47285647 T C SLC1A5 Missense_Mutation p.I273V 0.19 tolerated(0.08) benign(0.21) TCGA-BP-5186-01 19 54496107 54496107 C A CACNG6 5'UTR 0.22 TCGA-BP-5186-01 1 186278973 186278973 T A PRG4 Nonsense_Mutation p.L1157* 0.11 TCGA-BP-5186-01 1 201017771 201017771 T A CACNA1S Silent p.T1460T 0.19 TCGA-BP-5186-01 1 201021711 201021711 G A CACNA1S Silent p.F1309F 0.05 TCGA-BP-5186-01 1 38343913 38343913 T C INPP5B Missense_Mutation p.M542V 0.31 deleterious(0.02) probably_damaging(0.915) TCGA-BP-5186-01 20 17417465 17417465 C A PCSK2 Missense_Mutation p.N274K 0.04 deleterious(0) benign(0.281) TCGA-BP-5186-01 20 19955468 19955468 G T RIN2 Missense_Mutation p.G316W 0.13 deleterious(0) probably_damaging(0.999) TCGA-BP-5186-01 20 2968600 2968601 AT - PTPRA Intron 0.09 TCGA-BP-5186-01 20 41306778 41306778 G A PTPRT Missense_Mutation p.P294L 0.05 deleterious(0) probably_damaging(1) TCGA-BP-5186-01 20 45853096 45853096 T C ZMYND8 Missense_Mutation p.K998E 0.25 deleterious(0) probably_damaging(0.998) TCGA-BP-5186-01 22 30824783 30824783 G T MTFP1 3'UTR 0.27 TCGA-BP-5186-01 22 45574718 45574718 T G NUP50 Missense_Mutation p.S314A 0.24 tolerated(0.29) benign(0.003) TCGA-BP-5186-01 2 232952314 232952314 C T DIS3L2 Missense_Mutation p.P162S 0.05 tolerated(0.08) benign(0.1) TCGA-BP-5186-01 2 43934682 43934682 G A PLEKHH2 Missense_Mutation p.R655Q 0.32 deleterious(0) probably_damaging(0.934) TCGA-BP-5186-01 3 10188320 10188324 GGTAC - VHL Splice_Site p.X155_splice 0.21 TCGA-BP-5186-01 3 52610643 52610643 G T PBRM1 Missense_Mutation p.T1177K 0.37 deleterious(0) possibly_damaging(0.607) TCGA-BP-5186-01 3 64619448 64619448 G T ADAMTS9 Missense_Mutation p.A655D 0.24 deleterious(0) benign(0.285) TCGA-BP-5186-01 4 88394938 88394938 G C SPARCL1 Missense_Mutation p.L662V 0.20 deleterious(0) probably_damaging(0.974) TCGA-BP-5186-01 4 94693413 94693413 A T GRID2 Missense_Mutation p.T930S 0.27 tolerated_low_confidence(0.55) benign(0.175) TCGA-BP-5186-01 5 72849308 72849308 C A ANKRA2 Missense_Mutation p.S270I 0.09 tolerated(0.19) benign(0.154) TCGA-BP-5186-01 6 33156155 33156155 T - COL11A2 Frame_Shift_Del p.D197Vfs*99 0.27 TCGA-BP-5186-01 7 149486417 149486417 C G SSPO RNA 0.09 TCGA-BP-5186-01 7 87083894 87083895 - GCAGG ABCB4 Frame_Shift_Ins p.S101Pfs*5 0.12 TCGA-BP-5186-01 8 22167480 22167480 G A PIWIL2 Missense_Mutation p.G565R 0.23 deleterious(0) probably_damaging(0.996) TCGA-BP-5186-01 9 111659236 111659236 G A IKBKAP Nonsense_Mutation p.Q862* 0.21 TCGA-BP-5186-01 9 115818875 115818875 G T ZFP37 Missense_Mutation p.L32M 0.26 tolerated(0.21) benign(0.121) TCGA-BP-5186-01 X 153716013 153716013 C G SLC10A3 Missense_Mutation p.V423L 0.26 deleterious(0.04) benign(0.1) TCGA-BP-5186-01 X 55513238 55513238 T A USP51 Nonstop_Mutation p.*712Lext*7 0.20 TCGA-BP-5187-01 10 25887644 25887644 C G GPR158 Missense_Mutation p.S1030C 0.23 tolerated(0.05) probably_damaging(0.971) TCGA-BP-5187-01 10 68139003 68139003 C G CTNNA3 Missense_Mutation p.V547L 0.12 deleterious(0) unknown(0) TCGA-BP-5187-01 10 97816869 97816869 C T CCNJ Missense_Mutation p.P202L 0.24 deleterious(0) possibly_damaging(0.898) TCGA-BP-5187-01 11 20486044 20486044 A C PRMT3 Missense_Mutation p.E433D 0.14 benign(0.001) TCGA-BP-5187-01 11 20486049 20486049 C T PRMT3 Missense_Mutation p.S435L 0.15 benign(0.08) TCGA-BP-5187-01 11 57573353 57573353 G A CTNND1 Splice_Site p.X575_splice 0.15 TCGA-BP-5187-01 11 95825502 95825502 C T MAML2 Missense_Mutation p.D565N 0.22 probably_damaging(0.941) TCGA-BP-5187-01 12 105537004 105537004 A G KIAA1033 Missense_Mutation p.M665V 0.10 tolerated(0.5) benign(0.231) TCGA-BP-5187-01 12 13716451 13716451 G A GRIN2B Missense_Mutation p.R1241W 0.04 deleterious(0) probably_damaging(1) TCGA-BP-5187-01 12 43862444 43862444 T G ADAMTS20 Silent p.G394G 0.18 TCGA-BP-5187-01 12 70794112 70794112 C T KCNMB4 Nonsense_Mutation p.Q154* 0.02 TCGA-BP-5187-01 12 76741471 76741471 A G BBS10 Silent p.H98H 0.19 TCGA-BP-5187-01 13 33110645 33110645 G T N4BP2L2 Intron 0.15 TCGA-BP-5187-01 14 67779288 67779288 T C MPP5 Silent p.P362P 0.19 TCGA-BP-5187-01 14 91925215 91925215 T A SMEK1 Splice_Site p.X785_splice 0.23 TCGA-BP-5187-01 15 32916486 32916486 T G ARHGAP11A Missense_Mutation p.L137W 0.21 deleterious(0) probably_damaging(0.999) TCGA-BP-5187-01 15 39885311 39885311 T C THBS1 Missense_Mutation p.F960L 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-BP-5187-01 15 52065996 52065996 C A TMOD2 Missense_Mutation p.A124D 0.18 tolerated(0.13) benign(0.014) TCGA-BP-5187-01 15 52066002 52066002 C T TMOD2 Missense_Mutation p.A126V 0.19 deleterious(0.02) probably_damaging(0.933) TCGA-BP-5187-01 15 52356958 52356958 G A MAPK6 Missense_Mutation p.E643K 0.04 deleterious_low_confidence(0.01) benign(0.036) TCGA-BP-5187-01 16 4953981 4953981 C G PPL Missense_Mutation p.V75L 0.16 tolerated(1) benign(0.011) TCGA-BP-5187-01 17 27086257 27086258 - G FAM222B Frame_Shift_Ins p.N241Efs*27 0.25 TCGA-BP-5187-01 17 48191587 48191587 A G SAMD14 Silent p.S330S 0.12 TCGA-BP-5187-01 17 4849140 4849140 G T PFN1 3'UTR 0.16 TCGA-BP-5187-01 17 49057150 49057150 A C SPAG9 Missense_Mutation p.H1122Q 0.16 deleterious(0) possibly_damaging(0.898) TCGA-BP-5187-01 17 53040153 53040153 A G COX11 Missense_Mutation p.S258P 0.25 deleterious(0) probably_damaging(0.999) TCGA-BP-5187-01 17 78090863 78090863 A T GAA Missense_Mutation p.E762D 0.18 tolerated(0.2) benign(0.014) TCGA-BP-5187-01 18 12701062 12701062 T C CEP76 Silent p.E38E 0.23 TCGA-BP-5187-01 19 22271280 22271280 A G ZNF257 Missense_Mutation p.H243R 0.19 tolerated(0.29) benign(0.005) TCGA-BP-5187-01 19 45800968 45800968 T C MARK4 Missense_Mutation p.S545P 0.12 deleterious(0.05) benign(0.03) TCGA-BP-5187-01 19 51582708 51582708 A T KLK14 Missense_Mutation p.I171N 0.26 tolerated(0.43) benign(0.02) TCGA-BP-5187-01 19 55497591 55497591 G T NLRP2 Silent p.T758T 0.20 TCGA-BP-5187-01 19 55645276 55645276 C T TNNT1 Missense_Mutation p.R257H 0.04 deleterious(0) probably_damaging(0.985) TCGA-BP-5187-01 1 109477333 109477333 C T CLCC1 Missense_Mutation p.G539R 0.20 tolerated_low_confidence(0.19) benign(0.005) TCGA-BP-5187-01 1 147415599 147415599 T C GPR89B Missense_Mutation p.I85T 0.20 tolerated(0.71) benign(0.001) TCGA-BP-5187-01 1 153916542 153916542 A T DENND4B Silent p.V103V 0.15 TCGA-BP-5187-01 1 156498730 156498730 C T IQGAP3 Missense_Mutation p.D1517N 0.17 deleterious(0.02) benign(0.032) TCGA-BP-5187-01 1 171173043 171173043 C A FMO2 Missense_Mutation p.R223S 0.16 deleterious(0) probably_damaging(0.953) TCGA-BP-5187-01 1 21903878 21903878 C T ALPL Missense_Mutation p.H438Y 0.15 deleterious(0.01) benign(0.06) TCGA-BP-5187-01 1 55474113 55474113 T A BSND Missense_Mutation p.W259R 0.15 tolerated(1) benign(0.001) TCGA-BP-5187-01 20 2381082 2381082 C G TGM6 Missense_Mutation p.D327E 0.13 deleterious(0) probably_damaging(1) TCGA-BP-5187-01 20 57484440 57484441 - T GNAS Frame_Shift_Ins p.E852* 0.24 TCGA-BP-5187-01 20 60499490 60499490 C G CDH4 Missense_Mutation p.T576S 0.17 deleterious(0) benign(0.063) TCGA-BP-5187-01 22 17680487 17680488 - AAAT CECR1 Intron 0.34 TCGA-BP-5187-01 22 25251635 25251635 T A SGSM1 Silent p.V263V 0.14 TCGA-BP-5187-01 22 37603580 37603580 A G SSTR3 Missense_Mutation p.L88P 0.17 deleterious(0) probably_damaging(0.997) TCGA-BP-5187-01 2 162815017 162815017 A G SLC4A10 Silent p.L938L 0.12 TCGA-BP-5187-01 2 198508984 198508984 C T RFTN2 Silent p.S112S 0.20 TCGA-BP-5187-01 2 234237149 234237149 A G SAG Missense_Mutation p.K180E 0.20 deleterious(0) probably_damaging(0.998) TCGA-BP-5187-01 2 43571338 43571338 G C THADA Missense_Mutation p.H1422Q 0.08 tolerated(0.36) benign(0.02) TCGA-BP-5187-01 2 47221561 47221561 C A TTC7A Silent p.P303P 0.28 TCGA-BP-5187-01 2 84652566 84652566 A G SUCLG1 Silent p.P329P 0.19 TCGA-BP-5187-01 3 10183863 10183863 G A VHL Missense_Mutation p.S111N 0.17 tolerated(0.09) benign(0.016) TCGA-BP-5187-01 3 11348441 11348441 C A ATG7 Nonsense_Mutation p.C80* 0.29 TCGA-BP-5187-01 3 13659663 13659663 A T FBLN2 Missense_Mutation p.D606V 0.23 deleterious(0) probably_damaging(1) TCGA-BP-5187-01 3 52643768 52643768 G A PBRM1 Nonsense_Mutation p.R710* 0.27 TCGA-BP-5187-01 4 184629723 184629723 T C TRAPPC11 Missense_Mutation p.V1118A 0.11 deleterious(0) benign(0.441) TCGA-BP-5187-01 4 26487295 26487295 C T CCKAR Missense_Mutation p.R197H 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-BP-5187-01 4 38945294 38945294 A T FAM114A1 3'UTR 0.23 TCGA-BP-5187-01 4 88755860 88755860 C T MEPE 5'UTR 0.11 TCGA-BP-5187-01 5 122359616 122359616 T A PPIC Missense_Mutation p.K198M 0.29 deleterious(0.02) possibly_damaging(0.68) TCGA-BP-5187-01 5 138378410 138378410 T A SIL1 Splice_Site p.X118_splice 0.27 TCGA-BP-5187-01 5 159835383 159835383 T C SLU7 Missense_Mutation p.R258G 0.10 deleterious(0.04) possibly_damaging(0.614) TCGA-BP-5187-01 5 176295140 176295140 C A UNC5A Missense_Mutation p.T101N 0.29 deleterious(0.01) benign(0.001) TCGA-BP-5187-01 6 116752301 116752301 T A DSE Missense_Mutation p.F285L 0.22 tolerated(0.18) probably_damaging(0.987) TCGA-BP-5187-01 6 30457321 30457321 A G HLA-E Missense_Mutation p.T5A 0.12 tolerated_low_confidence(0.08) benign(0.217) TCGA-BP-5187-01 6 31675484 31675484 C T LY6G6F Missense_Mutation p.A101V 0.05 deleterious(0.03) probably_damaging(0.918) TCGA-BP-5187-01 7 100361679 100361679 C T ZAN Missense_Mutation p.S1376F 0.05 unknown(0) TCGA-BP-5187-01 7 128432343 128432343 C A CCDC136 5'UTR 0.44 TCGA-BP-5187-01 7 148877021 148877021 T C ZNF398 3'UTR 0.25 TCGA-BP-5187-01 7 75611556 75611556 A G POR Missense_Mutation p.E249G 0.39 deleterious(0.03) benign(0) TCGA-BP-5187-01 7 91739549 91739549 G T AKAP9 3'UTR 0.25 TCGA-BP-5187-01 7 99697218 99697218 C A MCM7 Missense_Mutation p.E90D 0.17 tolerated(0.55) benign(0.008) TCGA-BP-5187-01 9 103109629 103109629 T G TEX10 Silent p.G80G 0.20 TCGA-BP-5187-01 9 130495610 130495610 T C TOR2A Intron 0.16 TCGA-BP-5187-01 9 27948759 27948759 G A LINGO2 3'UTR 0.23 TCGA-BP-5187-01 9 32434667 32434667 C T ACO1 Silent p.N689N 0.20 TCGA-BP-5187-01 9 91616543 91616543 T C S1PR3 Missense_Mutation p.M143T 0.21 deleterious(0) probably_damaging(0.964) TCGA-BP-5187-01 9 95847078 95847078 A C SUSD3 3'UTR 0.54 TCGA-BP-5187-01 X 144905975 144905975 G A SLITRK2 Missense_Mutation p.D678N 0.40 tolerated(0.39) benign(0.349) TCGA-BP-5187-01 X 153209149 153209149 T C RENBP Missense_Mutation p.Y104C 0.35 tolerated(0.17) benign(0.049) TCGA-BP-5187-01 X 22010764 22010764 T - SMS Frame_Shift_Del p.L332Rfs*39 0.36 TCGA-BP-5187-01 X 48674573 48674573 A G HDAC6 Missense_Mutation p.I507V 0.33 tolerated(0.23) benign(0.162) TCGA-BP-5187-01 X 57162317 57162317 C T SPIN2A Silent p.V238V 0.48 TCGA-BP-5187-01 X 9862573 9862573 G A SHROOM2 Missense_Mutation p.A209T 0.06 deleterious(0) possibly_damaging(0.892) TCGA-BP-5189-01 10 103553717 103553717 C A MGEA5 Missense_Mutation p.D675Y 0.03 deleterious(0) possibly_damaging(0.867) TCGA-BP-5189-01 10 1042996 1042996 T G GTPBP4 Intron 0.28 TCGA-BP-5189-01 10 106209950 106209950 A T CCDC147 Missense_Mutation p.E833V 0.25 deleterious(0.03) possibly_damaging(0.876) TCGA-BP-5189-01 10 50532616 50532616 G A C10orf71 Missense_Mutation p.V676M 0.22 deleterious(0.02) benign(0.228) TCGA-BP-5189-01 10 72496510 72496510 G T ADAMTS14 Missense_Mutation p.K523N 0.09 deleterious(0) probably_damaging(0.999) TCGA-BP-5189-01 11 16838838 16838838 C T PLEKHA7 Missense_Mutation p.G459S 0.21 tolerated(0.6) benign(0.028) TCGA-BP-5189-01 11 16847952 16847952 T G PLEKHA7 Missense_Mutation p.E353A 0.18 tolerated(0.13) benign(0.065) TCGA-BP-5189-01 11 48346849 48346849 T A OR4C3 Nonsense_Mutation p.Y119* 0.09 TCGA-BP-5189-01 12 122957982 122957982 C T ZCCHC8 3'UTR 0.17 TCGA-BP-5189-01 12 132400471 132400471 G A ULK1 Missense_Mutation p.G549R 0.19 tolerated(0.07) probably_damaging(1) TCGA-BP-5189-01 14 36125081 36125081 C T RALGAPA1 Missense_Mutation p.E1304K 0.41 deleterious(0) probably_damaging(0.94) TCGA-BP-5189-01 14 50081325 50081325 G C LRR1 3'UTR 0.09 TCGA-BP-5189-01 14 58937442 58937442 G T KIAA0586 Splice_Site p.X904_splice 0.21 TCGA-BP-5189-01 14 72117112 72117112 G - SIPA1L1 Frame_Shift_Del p.E627Rfs*75 0.17 TCGA-BP-5189-01 14 75475794 75475794 T C EIF2B2 Missense_Mutation p.L320P 0.27 deleterious(0) probably_damaging(0.998) TCGA-BP-5189-01 15 33822793 33822793 G A RYR3 Missense_Mutation p.A94T 0.26 benign(0.098) TCGA-BP-5189-01 15 65551800 65551800 A C PARP16 Missense_Mutation p.V306G 0.25 deleterious(0) possibly_damaging(0.653) TCGA-BP-5189-01 15 74239564 74239564 G A LOXL1 Silent p.Q502Q 0.22 TCGA-BP-5189-01 15 75142952 75142952 A C SCAMP2 Missense_Mutation p.S179A 0.23 tolerated(0.26) benign(0.026) TCGA-BP-5189-01 16 67265179 67265179 A C FHOD1 Missense_Mutation p.L860R 0.12 deleterious(0) probably_damaging(1) TCGA-BP-5189-01 16 67579292 67579292 C G FAM65A Missense_Mutation p.F1035L 0.27 tolerated(1) benign(0.153) TCGA-BP-5189-01 16 83940609 83940609 G T MLYCD Silent p.L182L 0.20 TCGA-BP-5189-01 17 10351442 10351442 G A MYH4 Missense_Mutation p.A1553V 0.20 tolerated(0.09) benign(0.012) TCGA-BP-5189-01 17 75209495 75209495 G A SEC14L1 Missense_Mutation p.V655M 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-BP-5189-01 19 16263872 16263872 C G HSH2D 3'UTR 0.13 TCGA-BP-5189-01 19 20044531 20044531 C A ZNF93 Missense_Mutation p.P256H 0.18 deleterious(0.05) probably_damaging(0.946) TCGA-BP-5189-01 19 49469167 49469167 C T FTL Silent p.D81D 0.30 TCGA-BP-5189-01 19 55710122 55710122 C T PTPRH Missense_Mutation p.G527S 0.24 benign(0.038) TCGA-BP-5189-01 1 109888450 109888450 A G SORT1 Missense_Mutation p.F296L 0.28 deleterious(0.03) benign(0.006) TCGA-BP-5189-01 1 149920957 149920957 A G OTUD7B Silent p.Y384Y 0.24 TCGA-BP-5189-01 1 151143053 151143054 AA - TMOD4 Frame_Shift_Del p.F319Yfs*18 0.23 TCGA-BP-5189-01 1 160098797 160098797 C T ATP1A2 Missense_Mutation p.T415M 0.15 deleterious(0) probably_damaging(0.911) TCGA-BP-5189-01 1 212538406 212538406 G C TMEM206 3'UTR 0.26 TCGA-BP-5189-01 1 235969657 235969657 A - LYST Frame_Shift_Del p.S927Lfs*11 0.16 TCGA-BP-5189-01 1 44442331 44442331 G - ATP6V0B Frame_Shift_Del 0.27 TCGA-BP-5189-01 1 45101527 45101527 A G RNF220 Intron 0.22 TCGA-BP-5189-01 1 64643611 64643611 A G ROR1 Silent p.V629V 0.21 TCGA-BP-5189-01 2 191900934 191900934 C A STAT4 Missense_Mutation p.G509V 0.27 deleterious(0) probably_damaging(0.997) TCGA-BP-5189-01 2 201719363 201719363 G C CLK1 Missense_Mutation p.P441R 0.20 deleterious(0) probably_damaging(0.999) TCGA-BP-5189-01 2 3691463 3691463 G A COLEC11 Missense_Mutation p.A205T 0.07 tolerated(0.36) benign(0.016) TCGA-BP-5189-01 2 73868095 73868095 A G NAT8 Missense_Mutation p.S221P 0.16 deleterious(0.03) benign(0.228) TCGA-BP-5189-01 2 80530308 80530314 CGGTGAG - LRRTM1 Frame_Shift_Del p.L211Sfs*12 0.15 TCGA-BP-5189-01 2 87214115 87214115 C G RGPD1 Missense_Mutation p.Q1357E 0.07 tolerated(0.12) possibly_damaging(0.517) TCGA-BP-5189-01 3 112718328 112718328 A G GTPBP8 Silent p.G234G 0.03 TCGA-BP-5189-01 3 132390928 132390929 - TGAT UBA5 Frame_Shift_Ins p.E241Dfs*2 0.29 TCGA-BP-5189-01 3 48573722 48573722 G A PFKFB4 Silent p.G269G 0.03 TCGA-BP-5189-01 3 52595829 52595829 C - PBRM1 Frame_Shift_Del p.T1363Qfs*17 0.29 TCGA-BP-5189-01 4 22749618 22749618 A G GBA3 Missense_Mutation p.D329G 0.26 deleterious(0.01) probably_damaging(0.947) TCGA-BP-5189-01 4 66189869 66189869 A - EPHA5 Frame_Shift_Del p.M1026Rfs*6 0.28 TCGA-BP-5189-01 5 145980011 145980011 G A PPP2R2B Missense_Mutation p.P271L 0.08 tolerated(0.16) possibly_damaging(0.526) TCGA-BP-5189-01 5 158696067 158696067 C G UBLCP1 Silent p.L48L 0.16 TCGA-BP-5189-01 5 79854670 79854670 A T ANKRD34B Missense_Mutation p.L390H 0.24 tolerated(0.55) possibly_damaging(0.599) TCGA-BP-5189-01 6 107908313 107908313 T - SOBP Frame_Shift_Del p.Q204Sfs*28 0.10 TCGA-BP-5189-01 6 148853944 148853944 G C SASH1 Missense_Mutation p.V526L 0.23 deleterious(0.02) probably_damaging(0.93) TCGA-BP-5189-01 6 47847043 47847043 T C PTCHD4 Missense_Mutation p.S513G 0.07 tolerated(0.06) probably_damaging(0.966) TCGA-BP-5189-01 7 100189341 100189341 G A FBXO24 Missense_Mutation p.S163N 0.03 deleterious_low_confidence(0.05) benign(0.213) TCGA-BP-5189-01 7 148947875 148947875 A G ZNF212 Missense_Mutation p.N173S 0.25 deleterious(0.03) benign(0.147) TCGA-BP-5189-01 7 91736718 91736718 C T AKAP9 Missense_Mutation p.P3843L 0.19 benign(0.057) TCGA-BP-5189-01 8 11703216 11703216 G T CTSB Silent p.P292P 0.17 TCGA-BP-5189-01 8 120118232 120118232 T C COLEC10 Silent p.N212N 0.30 TCGA-BP-5189-01 8 143994277 143994277 C A CYP11B2 Missense_Mutation p.L382F 0.10 deleterious(0.01) possibly_damaging(0.892) TCGA-BP-5189-01 9 117848654 117848654 G A TNC Silent p.G452G 0.19 TCGA-BP-5189-01 X 142716848 142716848 G C SLITRK4 Missense_Mutation p.Q693E 0.04 tolerated(0.12) benign(0.015) TCGA-BP-5189-01 X 53225887 53225887 G - KDM5C Frame_Shift_Del p.H988Tfs*18 0.33 TCGA-BP-5190-01 10 430563 430563 A G DIP2C Missense_Mutation p.M560T 0.28 deleterious(0) possibly_damaging(0.743) TCGA-BP-5190-01 10 75533416 75533416 G C FUT11 Missense_Mutation p.D393H 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-BP-5190-01 10 90750746 90750746 C T ACTA2 5'UTR 0.25 TCGA-BP-5190-01 11 1017647 1017647 G T MUC6 Silent p.P1718P 0.12 TCGA-BP-5190-01 11 60785461 60785461 G A CD6 Missense_Mutation p.A605T 0.28 deleterious(0.01) probably_damaging(0.927) TCGA-BP-5190-01 12 118020150 118020150 G C KSR2 Missense_Mutation p.P396A 0.25 deleterious(0.01) possibly_damaging(0.826) TCGA-BP-5190-01 12 46245701 46245701 C A ARID2 Silent p.V1265V 0.29 TCGA-BP-5190-01 13 114549554 114549554 T G GAS6 Missense_Mutation p.N97H 0.31 tolerated(0.1) benign(0.002) TCGA-BP-5190-01 13 38154095 38154095 C A POSTN Missense_Mutation p.L521F 0.27 deleterious(0.03) possibly_damaging(0.695) TCGA-BP-5190-01 14 69445875 69445875 G C ACTN1 5'UTR 0.50 TCGA-BP-5190-01 15 22369272 22369272 G T OR4M2 Nonsense_Mutation p.E233* 0.20 TCGA-BP-5190-01 16 70064913 70064913 G C MIR1972-2 3'Flank 0.23 TCGA-BP-5190-01 17 12920219 12920219 G A ELAC2 Silent p.F109F 0.32 TCGA-BP-5190-01 17 38933946 38933946 A T KRT27 Missense_Mutation p.S337R 0.28 deleterious(0.04) benign(0.26) TCGA-BP-5190-01 17 4794820 4794820 G A MINK1 Missense_Mutation p.D604N 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-BP-5190-01 17 73316420 73316420 A C GRB2 3'UTR 0.30 TCGA-BP-5190-01 19 33902626 33902626 C A PEPD Missense_Mutation p.G257V 0.42 deleterious(0) probably_damaging(1) TCGA-BP-5190-01 19 36219945 36219945 C T KMT2B Missense_Mutation p.L1583F 0.24 probably_damaging(0.969) TCGA-BP-5190-01 19 36231433 36231433 C T IGFLR1 Missense_Mutation p.D64N 0.30 deleterious(0.03) benign(0.05) TCGA-BP-5190-01 19 51875076 51875086 CAGGCTCAGGG - NKG7 Frame_Shift_Del p.A148Gfs*12 0.28 TCGA-BP-5190-01 19 813136 813136 C T LPPR3 Missense_Mutation p.A559T 0.16 tolerated(0.25) benign(0.144) TCGA-BP-5190-01 19 9009312 9009312 G A MUC16 Missense_Mutation p.S13054F 0.24 probably_damaging(0.984) TCGA-BP-5190-01 19 9009313 9009313 A T MUC16 Missense_Mutation p.S13054T 0.24 benign(0.314) TCGA-BP-5190-01 1 12566928 12566928 T A VPS13D Silent p.I4272I 0.26 TCGA-BP-5190-01 1 150266811 150266811 G A MRPS21 Missense_Mutation p.A9T 0.31 probably_damaging(0.933) TCGA-BP-5190-01 1 201845133 201845133 G T IPO9 Missense_Mutation p.G1026V 0.29 tolerated(0.26) benign(0.002) TCGA-BP-5190-01 2 101622534 101622534 G C RPL31 Splice_Site p.X116_splice 0.21 TCGA-BP-5190-01 2 133541011 133541011 C A NCKAP5 Missense_Mutation p.A1125S 0.28 tolerated(0.57) benign(0) TCGA-BP-5190-01 2 175289230 175289230 G A SCRN3 Silent p.V315V 0.25 TCGA-BP-5190-01 2 202122823 202122823 T A CASP8 5'UTR 0.28 TCGA-BP-5190-01 2 211476961 211476961 G A CPS1 Missense_Mutation p.D844N 0.28 tolerated(0.08) benign(0.019) TCGA-BP-5190-01 2 27308027 27308032 GGAGTG - EMILIN1 Splice_Site p.X859_splice 0.27 TCGA-BP-5190-01 2 80136882 80136882 C T CTNNA2 Missense_Mutation p.R339W 0.36 deleterious(0) probably_damaging(0.984) TCGA-BP-5190-01 3 182871600 182871600 G A LAMP3 Missense_Mutation p.T210M 0.40 tolerated(0.12) benign(0.175) TCGA-BP-5190-01 3 187446848 187446848 T C BCL6 Missense_Mutation p.I449V 0.21 tolerated(0.16) benign(0.143) TCGA-BP-5190-01 3 52651299 52651299 G - PBRM1 Frame_Shift_Del p.Y600Ifs*42 0.34 TCGA-BP-5190-01 3 74474063 74474063 C A CNTN3 Missense_Mutation p.R129S 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-BP-5190-01 4 110650931 110650931 A G PLA2G12A Missense_Mutation p.L12P 0.42 tolerated(0.13) unknown(0) TCGA-BP-5190-01 4 122853762 122853762 G A TRPC3 Silent p.D217D 0.32 TCGA-BP-5190-01 4 40434807 40434807 C T RBM47 Missense_Mutation p.G468D 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-BP-5190-01 4 83719638 83719638 T G SCD5 Missense_Mutation p.E18A 0.20 tolerated(0.14) benign(0.023) TCGA-BP-5190-01 5 140174870 140174870 G A PCDHA2 Silent p.E107E 0.45 TCGA-BP-5190-01 5 157170976 157170976 G A LSM11 Missense_Mutation p.G73E 0.30 tolerated(0.05) benign(0.102) TCGA-BP-5190-01 6 168297599 168297599 C T MLLT4 Nonsense_Mutation p.Q422* 0.24 TCGA-BP-5190-01 6 31122472 31122472 C T CCHCR1 Missense_Mutation p.R201Q 0.40 tolerated(0.12) benign(0.392) TCGA-BP-5190-01 6 56373344 56373344 G C DST Missense_Mutation p.Q3785E 0.04 probably_damaging(0.995) TCGA-BP-5190-01 7 38803128 38803128 G C VPS41 Missense_Mutation p.P450R 0.29 deleterious(0) probably_damaging(0.989) TCGA-BP-5190-01 8 144672056 144672056 G A EEF1D Missense_Mutation p.P66S 0.14 tolerated(0.16) possibly_damaging(0.756) TCGA-BP-5190-01 8 6614716 6614716 C T AGPAT5 Missense_Mutation p.P301L 0.29 deleterious(0.03) benign(0.005) TCGA-BP-5190-01 9 14088271 14088271 G T NFIB 3'UTR 0.38 TCGA-BP-5190-01 9 89561010 89561010 G A GAS1 Missense_Mutation p.R229W 0.09 deleterious(0) probably_damaging(1) TCGA-BP-5190-01 X 153236256 153236256 C A HCFC1 Silent p.A12A 0.67 TCGA-BP-5190-01 X 53228204 53228204 T G KDM5C Missense_Mutation p.H733P 0.54 deleterious(0) probably_damaging(0.974) TCGA-BP-5190-01 X 75004670 75004670 C A MAGEE2 Missense_Mutation p.D73Y 0.52 deleterious(0.04) possibly_damaging(0.578) TCGA-BP-5191-01 10 123845033 123845033 G A TACC2 Silent p.Q1006Q 0.31 TCGA-BP-5191-01 10 54076514 54076514 G A DKK1 Missense_Mutation p.D250N 0.05 deleterious(0.02) possibly_damaging(0.511) TCGA-BP-5191-01 10 60994152 60994152 A C PHYHIPL Silent p.S65S 0.21 TCGA-BP-5191-01 10 94397051 94397051 G C KIF11 Missense_Mutation p.L662F 0.28 tolerated(0.71) benign(0.342) TCGA-BP-5191-01 10 99343409 99343409 G C ANKRD2 Missense_Mutation p.G337A 0.43 tolerated(0.74) benign(0.002) TCGA-BP-5191-01 11 281628 281628 G A NLRP6 Missense_Mutation p.A632T 0.14 tolerated(0.47) benign(0.054) TCGA-BP-5191-01 11 61897770 61897770 C A INCENP Silent p.L257L 0.32 TCGA-BP-5191-01 11 95581057 95581057 C G MTMR2 Missense_Mutation p.G334R 0.09 deleterious(0) probably_damaging(0.999) TCGA-BP-5191-01 12 102811474 102811474 C T IGF1 3'UTR 0.27 TCGA-BP-5191-01 12 110205829 110205829 C T FAM222A Missense_Mutation p.A32V 0.17 tolerated(0.19) benign(0.002) TCGA-BP-5191-01 12 56733621 56733621 G T IL23A Missense_Mutation p.Q136H 0.10 deleterious(0.01) possibly_damaging(0.834) TCGA-BP-5191-01 12 57550598 57550598 C - LRP1 Frame_Shift_Del p.P486Rfs*67 0.28 TCGA-BP-5191-01 14 45468576 45468576 G A FAM179B Silent p.G738G 0.11 TCGA-BP-5191-01 14 45571777 45571777 T C PRPF39 Silent p.S205S 0.15 TCGA-BP-5191-01 14 64430678 64430679 - A SYNE2 Frame_Shift_Ins p.D319Gfs*5 0.12 TCGA-BP-5191-01 14 65253682 65253682 C G SPTB Missense_Mutation p.E1001Q 0.09 tolerated(0.05) probably_damaging(0.99) TCGA-BP-5191-01 14 65253739 65253739 C G SPTB Missense_Mutation p.D982H 0.22 tolerated(0.06) possibly_damaging(0.776) TCGA-BP-5191-01 14 69256177 69256177 A G ZFP36L1 3'UTR 0.15 TCGA-BP-5191-01 14 89307274 89307274 T C TTC8 Splice_Site p.X110_splice 0.14 TCGA-BP-5191-01 14 91110479 91110479 A T TTC7B Missense_Mutation p.L555H 0.20 deleterious(0) probably_damaging(0.989) TCGA-BP-5191-01 15 25313022 25313022 T C SNORD116-7 RNA 0.28 TCGA-BP-5191-01 15 52476835 52476835 T G GNB5 Silent p.S13S 0.28 TCGA-BP-5191-01 16 23494281 23494281 C A GGA2 Silent p.R281R 0.11 TCGA-BP-5191-01 16 27375116 27375116 G T IL4R Missense_Mutation p.V815F 0.25 tolerated(0.08) benign(0.293) TCGA-BP-5191-01 16 28181115 28181115 T C XPO6 Missense_Mutation p.K174R 0.11 tolerated(0.79) benign(0.02) TCGA-BP-5191-01 16 47733444 47733444 A G PHKB 3'UTR 0.29 TCGA-BP-5191-01 16 74455087 74455087 C T CLEC18B Missense_Mutation p.V28M 0.14 tolerated(0.24) benign(0.012) TCGA-BP-5191-01 17 36352500 36352500 A - RP11-1407O15.2 Frame_Shift_Del p.D430Mfs*32 0.10 TCGA-BP-5191-01 17 45773464 45773464 G C TBKBP1 5'UTR 0.22 TCGA-BP-5191-01 17 73835999 73835999 A C UNC13D Missense_Mutation p.S326A 0.17 tolerated(0.19) benign(0.004) TCGA-BP-5191-01 19 19329806 19329806 G A NCAN Silent p.A52A 0.20 TCGA-BP-5191-01 19 2041090 2041090 G T MKNK2 Silent p.A353A 0.27 TCGA-BP-5191-01 19 36237651 36237651 T C PSENEN Missense_Mutation p.V70A 0.29 tolerated(0.3) benign(0.009) TCGA-BP-5191-01 19 4430546 4430546 G T CHAF1A Missense_Mutation p.D619Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-BP-5191-01 19 44571333 44571333 G C ZNF223 Missense_Mutation p.S451T 0.19 tolerated(1) benign(0.052) TCGA-BP-5191-01 19 4817858 4817858 G T TICAM1 Missense_Mutation p.L178I 0.12 tolerated(0.42) benign(0.071) TCGA-BP-5191-01 19 51503868 51503868 C T KLK8 Nonsense_Mutation p.W59* 0.16 TCGA-BP-5191-01 1 10502399 10502399 A G APITD1-CORT Intron 0.14 TCGA-BP-5191-01 1 11345987 11345987 C A UBIAD1 Missense_Mutation p.F272L 0.24 tolerated(0.13) benign(0.009) TCGA-BP-5191-01 1 155630682 155630682 T A YY1AP1 Missense_Mutation p.E478V 0.28 deleterious(0.01) possibly_damaging(0.804) TCGA-BP-5191-01 1 206634858 206634858 A - SRGAP2 3'UTR 0.16 TCGA-BP-5191-01 1 220213565 220213565 G A EPRS Silent p.S31S 0.14 TCGA-BP-5191-01 1 22850736 22850737 - T ZBTB40 Frame_Shift_Ins p.C1109Lfs*30 0.25 TCGA-BP-5191-01 1 235918806 235918806 A C LYST Missense_Mutation p.F2401V 0.13 tolerated(0.09) benign(0.391) TCGA-BP-5191-01 20 18123411 18123411 C T CSRP2BP Missense_Mutation p.T36M 0.07 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BP-5191-01 20 50408862 50408862 C T SALL4 Missense_Mutation p.E54K 0.13 tolerated(0.1) benign(0.036) TCGA-BP-5191-01 20 51870779 51870779 G - TSHZ2 Frame_Shift_Del p.A262Lfs*14 0.25 TCGA-BP-5191-01 21 15481370 15481370 T C LIPI Missense_Mutation p.K464E 0.29 tolerated(0.86) benign(0.081) TCGA-BP-5191-01 22 38119680 38119680 C A TRIOBP Missense_Mutation p.P373T 0.29 tolerated_low_confidence(0.43) benign(0.015) TCGA-BP-5191-01 2 131803571 131803571 C G ARHGEF4 Intron 0.05 TCGA-BP-5191-01 2 158971713 158971713 T C UPP2 Missense_Mutation p.I151T 0.12 deleterious(0.02) benign(0.047) TCGA-BP-5191-01 2 166170262 166170262 T G SCN2A Silent p.L389L 0.15 TCGA-BP-5191-01 2 197511118 197511118 C A CCDC150 Missense_Mutation p.N22K 0.14 deleterious(0.05) benign(0.436) TCGA-BP-5191-01 3 129324730 129324730 C A PLXND1 Missense_Mutation p.K251N 0.20 deleterious(0.04) benign(0.398) TCGA-BP-5191-01 3 33114174 33114174 T C GLB1 Missense_Mutation p.Y36C 0.42 deleterious(0) probably_damaging(0.957) TCGA-BP-5191-01 4 1206792 1206792 A C CTBP1 Missense_Mutation p.C350G 0.13 deleterious(0) probably_damaging(0.993) TCGA-BP-5191-01 4 144474413 144474413 A G SMARCA5 3'UTR 0.09 TCGA-BP-5191-01 4 954842 954842 G C DGKQ Missense_Mutation p.P908A 0.11 tolerated(0.06) possibly_damaging(0.881) TCGA-BP-5191-01 5 13753411 13753411 A T DNAH5 Silent p.P3601P 0.18 TCGA-BP-5191-01 5 38427321 38427321 G A EGFLAM Missense_Mutation p.R674H 0.17 deleterious(0) probably_damaging(1) TCGA-BP-5191-01 6 170162545 170162545 T A ERMARD Nonsense_Mutation p.L293* 0.13 TCGA-BP-5191-01 6 44222678 44222678 A G SLC35B2 Missense_Mutation p.I355T 0.22 deleterious(0) probably_damaging(0.997) TCGA-BP-5191-01 7 5085848 5085848 G C RBAK 5'UTR 0.21 TCGA-BP-5191-01 7 76912017 76912017 A T CCDC146 Missense_Mutation p.E688V 0.24 deleterious(0) probably_damaging(0.994) TCGA-BP-5191-01 7 82595361 82595361 A G PCLO Missense_Mutation p.L1248P 0.28 unknown(0) TCGA-BP-5191-01 7 91712684 91712684 G T AKAP9 Missense_Mutation p.K2787N 0.12 benign(0.222) TCGA-BP-5191-01 8 144945555 144945555 G A EPPK1 Missense_Mutation p.R623C 0.20 probably_damaging(0.953) TCGA-BP-5191-01 8 55541358 55541372 CAGATATTATCAAAC - RP1 In_Frame_Del p.D1640_P1644del 0.23 TCGA-BP-5191-01 8 91013753 91013753 G A DECR1 Silent p.L11L 0.09 TCGA-BP-5191-01 9 77442693 77442693 C T TRPM6 Splice_Site p.X281_splice 0.16 TCGA-BP-5191-01 9 99700276 99700276 T A NUTM2G Missense_Mutation p.L478H 0.17 deleterious(0.01) probably_damaging(0.926) TCGA-BP-5191-01 X 123197782 123197783 - A STAG2 Nonsense_Mutation p.Y636* 0.42 TCGA-BP-5191-01 X 24197441 24197458 TTATTGAGGACGTTGTTA - ZFX In_Frame_Del p.I68_I73del 0.41 TCGA-BP-5191-01 X 73071200 73071200 G T XIST RNA 0.21 TCGA-BP-5192-01 10 105815678 105815683 CCATGC - COL17A1 In_Frame_Del p.S515_D517delinsN 0.34 TCGA-BP-5192-01 10 114046095 114046095 G A TECTB Silent p.V143V 0.29 TCGA-BP-5192-01 10 125426346 125426346 G A GPR26 Silent p.A141A 0.37 TCGA-BP-5192-01 10 61830794 61830794 A G ANK3 Missense_Mutation p.I3282T 0.34 benign(0.001) TCGA-BP-5192-01 11 48152101 48152101 A G PTPRJ Missense_Mutation p.Q483R 0.41 tolerated(1) benign(0) TCGA-BP-5192-01 11 61070127 61070127 T C DDB1 Silent p.V1013V 0.34 TCGA-BP-5192-01 11 66612345 66612345 C T RCE1 Missense_Mutation p.R153C 0.06 tolerated(0.21) benign(0.003) TCGA-BP-5192-01 12 123344692 123344692 C A HIP1R Intron 0.54 TCGA-BP-5192-01 12 133201151 133201151 C T POLE 3'UTR 0.28 TCGA-BP-5192-01 12 50384068 50384068 A G RACGAP1 Missense_Mutation p.S628P 0.29 deleterious(0) possibly_damaging(0.776) TCGA-BP-5192-01 12 53453522 53453531 GCCTACAGCA - TENC1 Frame_Shift_Del p.T711Cfs*52 0.45 TCGA-BP-5192-01 14 104123884 104123884 T - KLC1 Frame_Shift_Del p.M89* 0.33 TCGA-BP-5192-01 14 88693788 88693788 C T KCNK10 Silent p.L204L 0.03 TCGA-BP-5192-01 15 40660395 40660395 G A DISP2 Silent p.L694L 0.62 TCGA-BP-5192-01 15 56993407 56993407 A G ZNF280D Missense_Mutation p.Y69H 0.26 tolerated(0.46) benign(0.034) TCGA-BP-5192-01 16 69744750 69744750 C T NQO1 3'UTR 0.29 TCGA-BP-5192-01 16 823128 823128 C T MSLNL Splice_Site p.X713_splice 0.08 TCGA-BP-5192-01 16 84211446 84211446 A G DNAAF1 Nonstop_Mutation p.*726Wext*? 0.38 TCGA-BP-5192-01 17 42249555 42249555 A G ASB16 Missense_Mutation p.H148R 0.31 deleterious(0.04) possibly_damaging(0.534) TCGA-BP-5192-01 17 57292183 57292194 ACCATGTCCGGT - SMG8 In_Frame_Del p.P933_V936del 0.34 TCGA-BP-5192-01 18 3089566 3089566 T C MYOM1 Silent p.E1346E 0.51 TCGA-BP-5192-01 19 1073241 1073241 A G HMHA1 Missense_Mutation p.N188S 0.21 deleterious(0.01) benign(0.233) TCGA-BP-5192-01 19 2418067 2418067 C T TMPRSS9 Silent p.L661L 0.36 TCGA-BP-5192-01 1 112319724 112319724 C T KCND3 Missense_Mutation p.A564T 0.36 tolerated_low_confidence(0.63) possibly_damaging(0.787) TCGA-BP-5192-01 1 204230552 204230552 A C PLEKHA6 Missense_Mutation p.Y136D 0.37 deleterious(0) probably_damaging(0.993) TCGA-BP-5192-01 1 205053016 205053016 C A TMEM81 Missense_Mutation p.V145L 0.29 tolerated(0.55) benign(0.002) TCGA-BP-5192-01 1 20998503 20998503 A G KIF17 Missense_Mutation p.S884P 0.39 deleterious(0.01) possibly_damaging(0.824) TCGA-BP-5192-01 1 20998504 20998504 C T KIF17 Silent p.E883E 0.38 TCGA-BP-5192-01 1 25256188 25256188 C G RUNX3 Missense_Mutation p.V72L 0.40 tolerated(0.08) benign(0.174) TCGA-BP-5192-01 1 28220534 28220534 T C RPA2 Silent p.V239V 0.04 TCGA-BP-5192-01 20 57429540 57429540 C G GNAS Missense_Mutation p.T407S 0.20 tolerated_low_confidence(0.4) unknown(0) TCGA-BP-5192-01 21 43816224 43816224 G A TMPRSS3 5'UTR 0.46 TCGA-BP-5192-01 2 136402959 136402959 C T R3HDM1 Silent p.F495F 0.32 TCGA-BP-5192-01 2 183960371 183960371 G A DUSP19 Silent p.Q213Q 0.33 TCGA-BP-5192-01 2 224462129 224462129 G C SCG2 3'UTR 0.33 TCGA-BP-5192-01 2 228883287 228883287 A G SPHKAP Silent p.A761A 0.37 TCGA-BP-5192-01 2 232373743 232373743 A G LINC00471 RNA 0.38 TCGA-BP-5192-01 2 25505226 25505226 G A DNMT3A Intron 0.40 TCGA-BP-5192-01 2 68882677 68882677 C A PROKR1 Missense_Mutation p.T384N 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.653) TCGA-BP-5192-01 3 10191508 10191511 GAGC - VHL Frame_Shift_Del p.S168* 0.49 TCGA-BP-5192-01 3 124487961 124487961 C G ITGB5 Splice_Site p.X639_splice 0.04 TCGA-BP-5192-01 3 186299170 186299170 A C DNAJB11 Missense_Mutation p.N156T 0.36 tolerated(0.34) benign(0.157) TCGA-BP-5192-01 3 46754550 46754550 C T PRSS50 Nonsense_Mutation p.W254* 0.19 TCGA-BP-5192-01 4 126411497 126411497 C T FAT4 Missense_Mutation p.A4507V 0.35 probably_damaging(0.99) TCGA-BP-5192-01 4 39308288 39308288 C A RFC1 Missense_Mutation p.G641V 0.36 deleterious(0) probably_damaging(0.967) TCGA-BP-5192-01 4 39308289 39308289 C A RFC1 Missense_Mutation p.G641C 0.35 deleterious(0) probably_damaging(0.997) TCGA-BP-5192-01 4 55979581 55979581 A - KDR Frame_Shift_Del p.L289* 0.30 TCGA-BP-5192-01 4 74005971 74005971 A T ANKRD17 Missense_Mutation p.L788M 0.33 benign(0.07) TCGA-BP-5192-01 5 137665253 137665253 A T CDC25C Missense_Mutation p.L93H 0.49 deleterious(0.04) benign(0.056) TCGA-BP-5192-01 5 139193067 139193067 C T PSD2 Missense_Mutation p.P182L 0.22 deleterious(0) probably_damaging(0.999) TCGA-BP-5192-01 5 140255065 140255065 T A PCDHA12 Missense_Mutation p.I3N 0.21 tolerated_low_confidence(0.06) benign(0.063) TCGA-BP-5192-01 5 149216300 149216300 G A PPARGC1B Missense_Mutation p.R761H 0.28 deleterious(0) probably_damaging(0.944) TCGA-BP-5192-01 5 170162829 170162829 T A KCNIP1 3'Flank 0.14 TCGA-BP-5192-01 5 170162830 170162830 C A KCNIP1 3'Flank 0.14 TCGA-BP-5192-01 6 13283726 13283726 G C TBC1D7 Intron 0.34 TCGA-BP-5192-01 6 32410977 32410978 CT - HLA-DRA Frame_Shift_Del p.T115Sfs*68 0.54 TCGA-BP-5192-01 6 44081767 44081767 G A MRPL14 Missense_Mutation p.A84V 0.34 deleterious(0) probably_damaging(0.924) TCGA-BP-5192-01 8 113347652 113347652 G T CSMD3 Silent p.T2357T 0.29 TCGA-BP-5192-01 8 145748563 145748563 C G LRRC24 Missense_Mutation p.A280P 0.36 tolerated(0.11) probably_damaging(0.917) TCGA-BP-5192-01 8 3566004 3566004 G A CSMD1 Missense_Mutation p.A314V 0.29 benign(0.107) TCGA-BP-5192-01 8 38139060 38139060 T - WHSC1L1 Frame_Shift_Del p.E1182Kfs*15 0.25 TCGA-BP-5192-01 8 73480522 73480522 A G KCNB2 Missense_Mutation p.K185E 0.28 deleterious(0) benign(0.18) TCGA-BP-5192-01 9 130413898 130413898 G T STXBP1 Silent p.V18V 0.42 TCGA-BP-5192-01 9 138713812 138713812 T G CAMSAP1 Missense_Mutation p.M899L 0.25 tolerated(0.09) benign(0.01) TCGA-BP-5192-01 9 35808676 35808678 TAC - NPR2 In_Frame_Del p.T962del 0.40 TCGA-BP-5192-01 9 95491475 95491475 T A BICD2 Missense_Mutation p.D95V 0.29 deleterious(0) probably_damaging(0.997) TCGA-BP-5192-01 X 107849993 107849993 C T COL4A5 Missense_Mutation p.P756S 0.74 unknown(0) TCGA-BP-5192-01 X 50341293 50341293 G A SHROOM4 Silent p.S1395S 0.65 TCGA-BP-5192-01 X 77096799 77096799 C G MAGT1 Missense_Mutation p.G314A 0.74 deleterious(0) possibly_damaging(0.857) TCGA-BP-5194-01 10 1058585 1058585 C T GTPBP4 Missense_Mutation p.P509S 0.05 tolerated(0.1) probably_damaging(0.973) TCGA-BP-5194-01 11 55135466 55135466 A G OR4A15 Missense_Mutation p.N36S 0.04 deleterious_low_confidence(0.01) benign(0.187) TCGA-BP-5194-01 11 65375920 65375920 C A MAP3K11 Splice_Site p.X247_splice 0.28 TCGA-BP-5194-01 11 9610146 9610146 C T WEE1 Silent p.Y646Y 0.33 TCGA-BP-5194-01 12 121004766 121004766 G C RNF10 Missense_Mutation p.S675T 0.23 deleterious(0.05) benign(0.26) TCGA-BP-5194-01 12 53045802 53045802 C T KRT2 Missense_Mutation p.C42Y 0.16 deleterious(0.05) unknown(0) TCGA-BP-5194-01 13 23904337 23904337 C G SACS Missense_Mutation p.V4560L 0.04 probably_damaging(0.979) TCGA-BP-5194-01 14 72925078 72925078 G A RGS6 Missense_Mutation p.R112H 0.26 deleterious(0) probably_damaging(1) TCGA-BP-5194-01 14 91755525 91755525 G A CCDC88C Silent p.A1455A 0.34 TCGA-BP-5194-01 15 45003781 45003781 C T B2M Missense_Mutation p.L13F 0.05 tolerated(0.19) benign(0.278) TCGA-BP-5194-01 15 45559673 45559673 C A SLC28A2 Silent p.I321I 0.35 TCGA-BP-5194-01 16 23481417 23481417 C - GGA2 Frame_Shift_Del p.G507Efs*13 0.25 TCGA-BP-5194-01 16 4247843 4247843 G A SRL Silent p.N111N 0.29 TCGA-BP-5194-01 16 46717480 46717480 C G VPS35 Missense_Mutation p.K14N 0.28 deleterious(0) possibly_damaging(0.87) TCGA-BP-5194-01 16 57503112 57503112 G A POLR2C Silent p.S98S 0.33 TCGA-BP-5194-01 17 11784599 11784599 A T DNAH9 Missense_Mutation p.N3559Y 0.23 probably_damaging(0.977) TCGA-BP-5194-01 17 32953491 32953491 C T TMEM132E Missense_Mutation p.S138L 0.38 deleterious(0) possibly_damaging(0.453) TCGA-BP-5194-01 17 46607033 46607033 C T HOXB1 Missense_Mutation p.R261H 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-BP-5194-01 17 5265015 5265015 A T RABEP1 Intron 0.16 TCGA-BP-5194-01 19 37129546 37129548 CAA - ZNF461 3'UTR 0.21 TCGA-BP-5194-01 19 49518395 49518395 C T RUVBL2 Silent p.C413C 0.14 TCGA-BP-5194-01 19 53762110 53762110 G A VN1R2 Missense_Mutation p.G161E 0.26 tolerated(0.1) possibly_damaging(0.808) TCGA-BP-5194-01 19 53762116 53762116 A T VN1R2 Missense_Mutation p.K163I 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-BP-5194-01 19 58319823 58319823 C T ZNF552 Missense_Mutation p.C270Y 0.06 deleterious(0.01) probably_damaging(1) TCGA-BP-5194-01 1 103483375 103483375 C A COL11A1 Splice_Site p.X471_splice 0.26 TCGA-BP-5194-01 1 214819699 214819699 G A CENPF Silent p.Q2262Q 0.27 TCGA-BP-5194-01 20 34322841 34322841 T C RBM39 Intron 0.39 TCGA-BP-5194-01 20 36982823 36982823 A G LBP Missense_Mutation p.M170V 0.33 tolerated(0.28) benign(0.002) TCGA-BP-5194-01 2 100199360 100199360 G T AFF3 Missense_Mutation p.S923Y 0.31 deleterious(0.05) probably_damaging(0.915) TCGA-BP-5194-01 2 159312934 159312934 A T CCDC148 Silent p.A6A 0.18 TCGA-BP-5194-01 2 37255866 37255866 G A HEATR5B Missense_Mutation p.H1187Y 0.25 tolerated(0.83) benign(0.099) TCGA-BP-5194-01 3 184801263 184801263 A C C3orf70 Missense_Mutation p.I95M 0.26 tolerated_low_confidence(0.22) probably_damaging(0.965) TCGA-BP-5194-01 3 52702549 52702555 GGAAGTC - PBRM1 Frame_Shift_Del p.D115Sfs*57 0.25 TCGA-BP-5194-01 5 38506069 38506069 A T LIFR Nonsense_Mutation p.L410* 0.03 TCGA-BP-5194-01 6 36198303 36198303 G T BRPF3 Missense_Mutation p.V1179L 0.29 deleterious(0) probably_damaging(0.991) TCGA-BP-5194-01 8 67590120 67590120 C A C8orf44 Silent p.V59V 0.11 TCGA-BP-5194-01 9 129931020 129931020 C A RALGPS1 Missense_Mutation p.L271I 0.06 deleterious(0) probably_damaging(0.989) TCGA-BP-5194-01 X 139040297 139040297 G A CXorf66 Silent p.I56I 0.63 TCGA-BP-5195-01 10 117024695 117024695 A G ATRNL1 Silent p.P571P 0.24 TCGA-BP-5195-01 10 118318744 118318744 G T PNLIP Missense_Mutation p.D337Y 0.15 deleterious(0.03) benign(0.256) TCGA-BP-5195-01 10 3209166 3209166 A C PITRM1 Nonsense_Mutation p.Y76* 0.20 TCGA-BP-5195-01 10 37418819 37418819 A G ANKRD30A Splice_Site p.X18_splice 0.21 TCGA-BP-5195-01 10 89692973 89692973 G T PTEN Missense_Mutation p.D153Y 0.21 deleterious(0) possibly_damaging(0.69) TCGA-BP-5195-01 11 105924485 105924486 TA - KBTBD3 Frame_Shift_Del p.T311Ifs*4 0.23 TCGA-BP-5195-01 11 122929405 122929405 A G HSPA8 Missense_Mutation p.L486P 0.21 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-BP-5195-01 11 1605898 1605898 C T KRTAP5-1 Silent p.K194K 0.24 TCGA-BP-5195-01 11 16133398 16133398 A G SOX6 Silent p.A283A 0.21 TCGA-BP-5195-01 11 46389268 46389268 G A DGKZ Missense_Mutation p.G302R 0.20 deleterious(0) probably_damaging(1) TCGA-BP-5195-01 11 55135733 55135733 G C OR4A15 Missense_Mutation p.C125S 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BP-5195-01 11 5906001 5906001 C T OR52E4 Missense_Mutation p.P160L 0.28 deleterious(0.01) benign(0.118) TCGA-BP-5195-01 11 61730303 61730306 ACCA - BEST1 Frame_Shift_Del p.N502Yfs*23 0.11 TCGA-BP-5195-01 11 92532099 92532099 G A FAT3 Missense_Mutation p.E1974K 0.24 benign(0.019) TCGA-BP-5195-01 12 123794374 123794377 TATT - SBNO1 Frame_Shift_Del p.N1108Efs*3 0.27 TCGA-BP-5195-01 12 22069954 22069954 T C ABCC9 Missense_Mutation p.N164D 0.18 tolerated(0.3) benign(0) TCGA-BP-5195-01 12 86199447 86199447 A C RASSF9 Missense_Mutation p.L114W 0.20 deleterious(0) probably_damaging(0.999) TCGA-BP-5195-01 13 20077377 20077377 G A TPTE2 5'UTR 0.11 TCGA-BP-5195-01 13 20601355 20601355 T G ZMYM2 Missense_Mutation p.I583S 0.12 tolerated(0.78) possibly_damaging(0.759) TCGA-BP-5195-01 13 25745612 25745612 C T AMER2 Missense_Mutation p.C49Y 0.23 deleterious(0) benign(0.086) TCGA-BP-5195-01 13 26152975 26152975 T C ATP8A2 Missense_Mutation p.L602P 0.23 deleterious(0) probably_damaging(0.985) TCGA-BP-5195-01 13 95838971 95838971 G A ABCC4 Missense_Mutation p.A510V 0.13 tolerated(0.48) benign(0.075) TCGA-BP-5195-01 14 24878974 24878974 A T NYNRIN Silent p.A658A 0.29 TCGA-BP-5195-01 14 94936172 94936172 T C SERPINA9 Silent p.A20A 0.28 TCGA-BP-5195-01 15 42632072 42632072 G A GANC Silent p.L683L 0.24 TCGA-BP-5195-01 15 43335474 43335475 - T UBR1 Frame_Shift_Ins p.S597Vfs*6 0.11 TCGA-BP-5195-01 16 15719413 15719413 C A KIAA0430 Missense_Mutation p.C590F 0.18 tolerated(0.78) benign(0.003) TCGA-BP-5195-01 16 2871075 2871075 G T PRSS21 Missense_Mutation p.A224S 0.16 deleterious(0) probably_damaging(0.999) TCGA-BP-5195-01 16 30495241 30495241 C G ITGAL Missense_Mutation p.N272K 0.20 deleterious(0.02) benign(0.057) TCGA-BP-5195-01 16 61851421 61851421 C A CDH8 Silent p.V413V 0.20 TCGA-BP-5195-01 17 28849291 28849291 C T GOSR1 Silent p.N216N 0.24 TCGA-BP-5195-01 17 40997546 40997546 T C AOC2 Silent p.S301S 0.21 TCGA-BP-5195-01 17 7350951 7350951 C A CHRNB1 Missense_Mutation p.H198N 0.05 tolerated(0.11) benign(0.012) TCGA-BP-5195-01 18 29775406 29775406 A G MEP1B Missense_Mutation p.R70G 0.25 deleterious(0) probably_damaging(0.991) TCGA-BP-5195-01 18 3119942 3119942 T A MYOM1 Missense_Mutation p.N1015Y 0.15 deleterious(0) probably_damaging(1) TCGA-BP-5195-01 18 60985489 60985489 G A BCL2 Silent p.L137L 0.20 TCGA-BP-5195-01 19 18778755 18778755 C G KLHL26 Missense_Mutation p.S183W 0.21 tolerated(0.17) probably_damaging(0.998) TCGA-BP-5195-01 19 43243171 43243171 A T PSG3 Silent p.V45V 0.19 TCGA-BP-5195-01 19 46317992 46317992 T G RSPH6A Missense_Mutation p.Q148P 0.23 tolerated_low_confidence(0.13) benign(0) TCGA-BP-5195-01 19 53116221 53116221 T A ZNF83 3'UTR 0.30 TCGA-BP-5195-01 19 7806690 7806690 T A CD209 3'UTR 0.11 TCGA-BP-5195-01 1 111861178 111861178 C A CHIA Missense_Mutation p.P265T 0.18 deleterious(0) probably_damaging(0.988) TCGA-BP-5195-01 1 11254587 11254587 C A ANGPTL7 Missense_Mutation p.R248S 0.29 deleterious(0) probably_damaging(0.97) TCGA-BP-5195-01 1 154437941 154437950 CAGCTTATCT - IL6R 3'UTR 0.30 TCGA-BP-5195-01 1 155313396 155313396 T C ASH1L Missense_Mutation p.K2707E 0.21 tolerated_low_confidence(0.09) probably_damaging(0.993) TCGA-BP-5195-01 1 247486484 247486484 T C ZNF496 Missense_Mutation p.Q208R 0.06 deleterious(0.01) benign(0.157) TCGA-BP-5195-01 1 26288568 26288568 T G PAFAH2 Missense_Mutation p.K364T 0.26 tolerated(0.08) benign(0.309) TCGA-BP-5195-01 1 27739130 27739130 A T WASF2 Missense_Mutation p.S254T 0.16 tolerated(0.49) unknown(0) TCGA-BP-5195-01 21 44589355 44589355 G A CRYAA Missense_Mutation p.R49H 0.05 tolerated(0.1) possibly_damaging(0.577) TCGA-BP-5195-01 21 45876771 45876771 G A LRRC3 Missense_Mutation p.G82R 0.17 tolerated(0.16) benign(0.099) TCGA-BP-5195-01 22 28192870 28192870 G A MN1 Missense_Mutation p.A1221V 0.27 probably_damaging(0.986) TCGA-BP-5195-01 22 50538014 50538014 T C MOV10L1 Missense_Mutation p.L142P 0.21 tolerated(0.1) benign(0.021) TCGA-BP-5195-01 2 127453643 127453643 T G GYPC Missense_Mutation p.S104R 0.19 deleterious(0) possibly_damaging(0.899) TCGA-BP-5195-01 2 163695012 163695012 C G KCNH7 Missense_Mutation p.G6A 0.14 deleterious(0) probably_damaging(0.999) TCGA-BP-5195-01 2 179979860 179979860 T C SESTD1 Missense_Mutation p.T591A 0.17 deleterious(0.02) benign(0.006) TCGA-BP-5195-01 2 20096774 20096774 T - TTC32 Frame_Shift_Del p.R144Efs*26 0.26 TCGA-BP-5195-01 2 211421408 211421408 T A CPS1 Intron 0.28 TCGA-BP-5195-01 2 24494732 24494732 C G ITSN2 Missense_Mutation p.Q720H 0.23 tolerated(0.36) unknown(0) TCGA-BP-5195-01 2 30454520 30454520 C G LBH 5'UTR 0.24 TCGA-BP-5195-01 2 33518334 33518334 C T LTBP1 Missense_Mutation p.H1074Y 0.05 tolerated(1) benign(0.222) TCGA-BP-5195-01 2 46378281 46378281 T C PRKCE Silent p.N611N 0.21 TCGA-BP-5195-01 2 47389525 47389525 C T CALM2 Missense_Mutation p.G62D 0.20 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-BP-5195-01 3 10183863 10183863 G A VHL Missense_Mutation p.S111N 0.40 tolerated(0.09) benign(0.016) TCGA-BP-5195-01 3 40498824 40498824 T C RPL14 5'Flank 0.29 TCGA-BP-5195-01 3 52696169 52696169 G A PBRM1 Nonsense_Mutation p.Q170* 0.30 TCGA-BP-5195-01 4 140394375 140394375 G A RAB33B 3'UTR 0.21 TCGA-BP-5195-01 4 36130283 36130283 C T ARAP2 Missense_Mutation p.R1171K 0.06 deleterious(0) probably_damaging(0.976) TCGA-BP-5195-01 4 71469169 71469169 A C AMBN Missense_Mutation p.N249H 0.09 deleterious(0.01) probably_damaging(0.974) TCGA-BP-5195-01 5 138118951 138118951 C G CTNNA1 Missense_Mutation p.S64C 0.19 deleterious(0.01) possibly_damaging(0.868) TCGA-BP-5195-01 5 56558502 56558502 A G GPBP1 Missense_Mutation p.S456G 0.26 deleterious(0) benign(0.105) TCGA-BP-5195-01 5 64946709 64946709 G C TRAPPC13 Missense_Mutation p.Q167H 0.19 deleterious(0.04) benign(0.414) TCGA-BP-5195-01 6 160908435 160908435 G A LPAL2 RNA 0.12 TCGA-BP-5195-01 6 34664294 34664294 G T C6orf106 Silent p.S29S 0.07 TCGA-BP-5195-01 6 56472115 56472115 G C DST Intron 0.22 TCGA-BP-5195-01 6 7594021 7594021 T A SNRNP48 Missense_Mutation p.L71M 0.26 tolerated(0.25) probably_damaging(0.998) TCGA-BP-5195-01 6 97052642 97052642 A T FHL5 Missense_Mutation p.D59V 0.27 deleterious(0) possibly_damaging(0.588) TCGA-BP-5195-01 7 112108122 112108122 C G IFRD1 Missense_Mutation p.D331E 0.05 deleterious(0.01) benign(0.281) TCGA-BP-5195-01 7 88963886 88963886 T G ZNF804B Missense_Mutation p.D530E 0.25 deleterious(0.04) benign(0.059) TCGA-BP-5195-01 7 91503200 91503200 A C MTERF Missense_Mutation p.L303R 0.20 deleterious(0) probably_damaging(0.97) TCGA-BP-5195-01 8 113349868 113349868 C A CSMD3 Nonsense_Mutation p.E2249* 0.19 TCGA-BP-5195-01 8 125568525 125568525 G A MTSS1 Missense_Mutation p.A451V 0.23 tolerated(0.37) benign(0.017) TCGA-BP-5195-01 8 30977877 30977877 G A WRN Missense_Mutation p.G856D 0.26 deleterious(0) probably_damaging(1) TCGA-BP-5195-01 9 135926204 135926204 A G GTF3C5 Missense_Mutation p.N203D 0.16 deleterious(0) probably_damaging(0.972) TCGA-BP-5195-01 9 139324071 139324071 G C INPP5E 3'UTR 0.28 TCGA-BP-5195-01 9 18706914 18706914 C A ADAMTSL1 Missense_Mutation p.P582T 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-BP-5195-01 X 53222742 53222749 GGGGGCCC - KDM5C Frame_Shift_Del p.R1396Lfs*17 0.22 TCGA-BP-5195-01 X 53245075 53245075 T A KDM5C Nonsense_Mutation p.K289* 0.39 TCGA-BP-5195-01 X 54324791 54324791 A - WNK3 Frame_Shift_Del p.F405Lfs*7 0.13 TCGA-BP-5196-01 10 115534737 115534737 C A PLEKHS1 Missense_Mutation p.T305K 0.11 tolerated(0.19) benign(0.142) TCGA-BP-5196-01 10 129913557 129913557 C G MKI67 Missense_Mutation p.R372T 0.12 tolerated(0.29) benign(0.201) TCGA-BP-5196-01 10 72617449 72617449 T C SGPL1 Splice_Site p.X162_splice 0.16 TCGA-BP-5196-01 10 99223688 99223688 A G MMS19 Silent p.P613P 0.36 TCGA-BP-5196-01 10 99400914 99400914 T G PI4K2A Missense_Mutation p.F139V 0.23 deleterious(0) benign(0.261) TCGA-BP-5196-01 11 113860606 113860606 C A HTR3A 3'UTR 0.20 TCGA-BP-5196-01 11 121000921 121000922 - T TECTA Splice_Site p.X981_splice 0.26 TCGA-BP-5196-01 11 134253723 134253723 C T B3GAT1 Missense_Mutation p.A158T 0.19 tolerated(0.54) benign(0.001) TCGA-BP-5196-01 11 55339950 55339950 C T OR4C16 Missense_Mutation p.T116M 0.28 tolerated(1) benign(0) TCGA-BP-5196-01 11 614301 614301 G A IRF7 Silent p.L197L 0.19 TCGA-BP-5196-01 11 85409119 85409119 T A SYTL2 Nonsense_Mutation p.K1124* 0.28 TCGA-BP-5196-01 12 100733089 100733089 G A SCYL2 3'UTR 0.18 TCGA-BP-5196-01 12 110628765 110628766 AC - IFT81 Frame_Shift_Del p.T461Pfs*13 0.20 TCGA-BP-5196-01 12 133295376 133295376 T G PGAM5 Intron 0.25 TCGA-BP-5196-01 12 40114940 40114940 C A C12orf40 Missense_Mutation p.L616I 0.31 tolerated(1) benign(0.003) TCGA-BP-5196-01 12 85438507 85438507 G A LRRIQ1 Missense_Mutation p.G86R 0.18 deleterious(0.05) benign(0.263) TCGA-BP-5196-01 12 89865497 89865498 - T POC1B Frame_Shift_Ins p.N190Kfs*6 0.28 TCGA-BP-5196-01 13 25744209 25744209 C T AMER2 Missense_Mutation p.V517I 0.15 tolerated(0.4) benign(0.08) TCGA-BP-5196-01 13 41706394 41706394 T C KBTBD6 Missense_Mutation p.N85S 0.11 tolerated(0.22) possibly_damaging(0.669) TCGA-BP-5196-01 13 53624774 53624774 A G OLFM4 Silent p.L467L 0.16 TCGA-BP-5196-01 14 92054360 92054360 C A CATSPERB Missense_Mutation p.A1007S 0.28 tolerated(0.45) benign(0.002) TCGA-BP-5196-01 15 38643269 38643274 AGAATA G SPRED1 Frame_Shift_Del p.R247Efs*17 0.22 TCGA-BP-5196-01 15 76994175 76994175 A G SCAPER Missense_Mutation p.V811A 0.22 deleterious(0.01) benign(0.02) TCGA-BP-5196-01 16 57509863 57509863 G C DOK4 Missense_Mutation p.R25G 0.22 deleterious(0.02) benign(0.32) TCGA-BP-5196-01 16 80638176 80638183 ACGTATAA - CDYL2 3'UTR 0.23 TCGA-BP-5196-01 17 11738174 11738174 G C DNAH9 Missense_Mutation p.A3156P 0.11 benign(0.301) TCGA-BP-5196-01 17 4458493 4458494 - A MYBBP1A Frame_Shift_Ins p.A43Cfs*4 0.19 TCGA-BP-5196-01 18 21056977 21056977 G A RIOK3 Missense_Mutation p.R394Q 0.09 tolerated(1) benign(0.001) TCGA-BP-5196-01 19 3907733 3907733 C T ATCAY Silent p.D120D 0.20 TCGA-BP-5196-01 19 44501334 44501334 A G ZNF155 Missense_Mutation p.N453S 0.14 tolerated(0.22) benign(0.047) TCGA-BP-5196-01 1 151496775 151496775 C T CGN Silent p.L448L 0.21 TCGA-BP-5196-01 1 155292322 155292330 ACACTGGTT - RUSC1 In_Frame_Del p.N253_W256delinsR 0.21 TCGA-BP-5196-01 1 17034423 17034423 C T ESPNP RNA 0.15 TCGA-BP-5196-01 1 200801906 200801912 AAGAATA - CAMSAP2 Frame_Shift_Del p.Q287Pfs*2 0.19 TCGA-BP-5196-01 1 202566077 202566077 C T SYT2 Silent p.V356V 0.30 TCGA-BP-5196-01 1 224345385 224345385 A - FBXO28 Frame_Shift_Del p.K350Rfs*6 0.29 TCGA-BP-5196-01 1 26664087 26664087 C A AIM1L Nonsense_Mutation p.E322* 0.19 TCGA-BP-5196-01 20 62642793 62642793 C T PRPF6 Silent p.I487I 0.25 TCGA-BP-5196-01 2 130832141 130832141 G A POTEF Silent p.G968G 0.26 TCGA-BP-5196-01 2 145157442 145157442 G A ZEB2 Missense_Mutation p.H438Y 0.26 tolerated(0.11) possibly_damaging(0.869) TCGA-BP-5196-01 2 192214900 192214900 G T MYO1B Missense_Mutation p.D171Y 0.19 deleterious(0) probably_damaging(0.954) TCGA-BP-5196-01 2 197594682 197594683 - T CCDC150 Frame_Shift_Ins p.L942Ffs*9 0.23 TCGA-BP-5196-01 2 201721535 201721535 C A CLK1 Splice_Site p.X352_splice 0.37 TCGA-BP-5196-01 2 235951396 235951396 G T SH3BP4 Missense_Mutation p.L661F 0.24 tolerated(0.1) probably_damaging(0.965) TCGA-BP-5196-01 2 27892203 27892203 T C SLC4A1AP Silent p.L432L 0.03 TCGA-BP-5196-01 2 84804488 84804488 C A DNAH6 Missense_Mutation p.L678I 0.04 tolerated(0.2) benign(0.028) TCGA-BP-5196-01 2 86361451 86361451 T A PTCD3 Missense_Mutation p.L527Q 0.20 deleterious(0) probably_damaging(0.986) TCGA-BP-5196-01 3 10188309 10188309 T C VHL Missense_Mutation p.I151T 0.36 deleterious(0) probably_damaging(0.996) TCGA-BP-5196-01 3 108572578 108572578 C A TRAT1 Missense_Mutation p.Q139K 0.28 tolerated(0.33) benign(0.034) TCGA-BP-5196-01 4 90169162 90169175 CAAGGATGCACCAT - GPRIN3 Frame_Shift_Del p.Y696* 0.12 TCGA-BP-5196-01 4 94316836 94316836 G C GRID2 Missense_Mutation p.V442L 0.29 deleterious(0.02) benign(0.005) TCGA-BP-5196-01 5 10227514 10227514 G A FAM173B 3'UTR 0.28 TCGA-BP-5196-01 5 127609608 127609608 A T FBN2 Nonsense_Mutation p.C2588* 0.24 TCGA-BP-5196-01 5 130897689 130897689 C T RAPGEF6 Silent p.E111E 0.20 TCGA-BP-5196-01 5 176813524 176813526 CAG - SLC34A1 In_Frame_Del p.S164del 0.30 TCGA-BP-5196-01 5 32052785 32052785 C T PDZD2 Silent p.L578L 0.29 TCGA-BP-5196-01 6 2784577 2784577 G A WRNIP1 Silent p.A554A 0.28 TCGA-BP-5196-01 6 75968691 75968691 G C TMEM30A Missense_Mutation p.P233A 0.19 deleterious(0) probably_damaging(1) TCGA-BP-5196-01 6 79708068 79708068 G A PHIP Silent p.I640I 0.26 TCGA-BP-5196-01 7 19737956 19737956 T G TWISTNB Missense_Mutation p.K334Q 0.24 deleterious_low_confidence(0.01) benign(0.051) TCGA-BP-5196-01 8 28206650 28206650 A G ZNF395 Silent p.S474S 0.30 TCGA-BP-5196-01 8 67342008 67342009 - A RRS1 Frame_Shift_Ins p.E216Gfs*71 0.25 TCGA-BP-5196-01 8 77776069 77776069 T C ZFHX4 Silent p.A3373A 0.38 TCGA-BP-5196-01 8 80678002 80678002 G A HEY1 Silent p.Y116Y 0.18 TCGA-BP-5196-01 X 103349894 103349894 G A SLC25A53 Missense_Mutation p.T16M 0.34 tolerated(0.06) benign(0.072) TCGA-BP-5196-01 X 54959758 54959759 - AGC PFKFB1 3'UTR 0.38 TCGA-BP-5198-01 10 134012456 134012456 C A DPYSL4 Silent p.I264I 0.11 TCGA-BP-5198-01 11 33565157 33565157 C A KIAA1549L Missense_Mutation p.T386K 0.32 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-BP-5198-01 11 77412360 77412360 A T RSF1 Nonsense_Mutation p.C638* 0.33 TCGA-BP-5198-01 11 92531032 92531032 C T FAT3 Missense_Mutation p.P1618L 0.09 probably_damaging(0.984) TCGA-BP-5198-01 12 133198066 133198067 - A P2RX2 Frame_Shift_Ins p.F336Vfs*9 0.17 TCGA-BP-5198-01 12 32976979 32976979 C G PKP2 Missense_Mutation p.K602N 0.20 deleterious(0) probably_damaging(1) TCGA-BP-5198-01 12 49315838 49315838 T A FKBP11 Nonsense_Mutation p.K179* 0.27 TCGA-BP-5198-01 12 59268041 59268041 A - LRIG3 Frame_Shift_Del p.Y971Tfs*24 0.29 TCGA-BP-5198-01 12 69764550 69764550 C G YEATS4 Missense_Mutation p.T133R 0.28 tolerated(0.58) benign(0.007) TCGA-BP-5198-01 12 94772632 94772632 C T CCDC41 Missense_Mutation p.E246K 0.14 deleterious(0) probably_damaging(0.997) TCGA-BP-5198-01 13 25284712 25284712 T A ATP12A Missense_Mutation p.F966I 0.26 tolerated(0.09) benign(0.013) TCGA-BP-5198-01 14 20216035 20216035 G T OR4Q3 Missense_Mutation p.W150L 0.15 deleterious(0) probably_damaging(0.999) TCGA-BP-5198-01 14 23535201 23535207 GATTTGG - ACIN1 Frame_Shift_Del p.P817Hfs*53 0.19 TCGA-BP-5198-01 14 71462626 71462626 T C PCNX Silent p.S871S 0.22 TCGA-BP-5198-01 14 92958092 92958092 C T SLC24A4 Nonsense_Mutation p.Q541* 0.13 TCGA-BP-5198-01 15 31851379 31851379 A - OTUD7A Frame_Shift_Del p.S115Pfs*42 0.25 TCGA-BP-5198-01 15 41819689 41819689 C - RPAP1 Frame_Shift_Del p.A515Qfs*40 0.20 TCGA-BP-5198-01 15 48782117 48782117 C A FBN1 Nonsense_Mutation p.E1005* 0.15 TCGA-BP-5198-01 15 63955309 63955310 - TT HERC1 Frame_Shift_Ins p.N2925Kfs*3 0.23 TCGA-BP-5198-01 15 85147434 85147434 A T ZSCAN2 Silent p.V92V 0.11 TCGA-BP-5198-01 16 27523128 27523128 T C GTF3C1 Silent p.T356T 0.29 TCGA-BP-5198-01 16 31927436 31927436 T G ZNF267 Missense_Mutation p.H622Q 0.26 deleterious(0) probably_damaging(0.937) TCGA-BP-5198-01 16 68109279 68109279 C A DUS2 Silent p.A318A 0.23 TCGA-BP-5198-01 16 89350692 89350692 G - ANKRD11 Frame_Shift_Del p.P753Rfs*6 0.21 TCGA-BP-5198-01 17 20911265 20911265 C T USP22 Missense_Mutation p.C383Y 0.24 deleterious(0) probably_damaging(1) TCGA-BP-5198-01 17 32954049 32954049 G A TMEM132E Missense_Mutation p.S234N 0.18 tolerated(0.18) benign(0.001) TCGA-BP-5198-01 17 33905215 33905215 G A PEX12 5'UTR 0.58 TCGA-BP-5198-01 17 38420931 38420931 C T WIPF2 Missense_Mutation p.T168M 0.15 deleterious(0.01) possibly_damaging(0.53) TCGA-BP-5198-01 17 42333125 42333125 G A SLC4A1 Silent p.L572L 0.15 TCGA-BP-5198-01 17 62479086 62479086 T C POLG2 Missense_Mutation p.I381V 0.18 tolerated(0.72) benign(0.018) TCGA-BP-5198-01 17 65718733 65718733 T G NOL11 Missense_Mutation p.L167V 0.21 tolerated(0.36) benign(0.01) TCGA-BP-5198-01 19 17003921 17003921 A C CPAMD8 Nonstop_Mutation p.*1933Eext*? 0.21 TCGA-BP-5198-01 19 17845254 17845254 C A MAP1S 3'UTR 0.28 TCGA-BP-5198-01 19 20975384 20975384 G C ZNF66 Missense_Mutation p.A24P 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-BP-5198-01 19 2229790 2229790 A C DOT1L Nonstop_Mutation p.*1538Sext*63 0.19 TCGA-BP-5198-01 19 4097299 4097301 AGT - MAP2K2 In_Frame_Del p.E320_L321delinsD 0.13 TCGA-BP-5198-01 19 45997672 45997672 T C RTN2 Missense_Mutation p.D189G 0.11 deleterious_low_confidence(0.03) benign(0.017) TCGA-BP-5198-01 19 50868793 50868793 T C NAPSA Intron 0.34 TCGA-BP-5198-01 19 52570738 52570738 C A ZNF841 Nonsense_Mutation p.E133* 0.21 TCGA-BP-5198-01 19 52618234 52618234 C T ZNF616 Missense_Mutation p.R728Q 0.23 tolerated(0.84) benign(0.018) TCGA-BP-5198-01 19 57325778 57325778 G C PEG3 Missense_Mutation p.S1344R 0.14 deleterious(0.02) possibly_damaging(0.67) TCGA-BP-5198-01 19 5957974 5957974 G C RANBP3 Silent p.A11A 0.06 TCGA-BP-5198-01 19 8376344 8376344 A - NDUFA7 3'UTR 0.31 TCGA-BP-5198-01 1 13668989 13668989 G A PRAMEF14 Silent p.P447P 0.44 TCGA-BP-5198-01 1 151847232 151847232 G A THEM4 3'UTR 0.18 TCGA-BP-5198-01 1 161495527 161495527 A T HSPA6 Missense_Mutation p.E360V 0.17 deleterious_low_confidence(0) possibly_damaging(0.633) TCGA-BP-5198-01 1 183195848 183195848 A C LAMC2 Missense_Mutation p.D361A 0.21 deleterious(0) probably_damaging(0.996) TCGA-BP-5198-01 1 241886621 241886621 G T WDR64 Missense_Mutation p.L349F 0.32 deleterious(0) probably_damaging(1) TCGA-BP-5198-01 1 24201824 24201824 T A CNR2 Missense_Mutation p.H95L 0.23 deleterious(0) probably_damaging(1) TCGA-BP-5198-01 1 39908131 39908131 C A MACF1 Silent p.A4273A 0.15 TCGA-BP-5198-01 20 47887879 47887879 G C ZNFX1 Missense_Mutation p.P157R 0.22 deleterious(0) possibly_damaging(0.611) TCGA-BP-5198-01 20 55101052 55101052 C T FAM209A Nonsense_Mutation p.R148* 0.16 TCGA-BP-5198-01 20 62703549 62703549 T C TCEA2 3'UTR 0.14 TCGA-BP-5198-01 22 21075676 21075676 C T PI4KA Missense_Mutation p.A1676T 0.22 tolerated(0.31) possibly_damaging(0.733) TCGA-BP-5198-01 22 37462221 37462221 C G TMPRSS6 Missense_Mutation p.G779R 0.31 deleterious(0) probably_damaging(1) TCGA-BP-5198-01 22 42456227 42456227 G A NAGA 3'UTR 0.32 TCGA-BP-5198-01 2 110926096 110926096 G T NPHP1 Missense_Mutation p.P186H 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-BP-5198-01 2 131704249 131704249 C T ARHGEF4 Intron 0.15 TCGA-BP-5198-01 2 143913197 143913197 C T ARHGAP15 Silent p.L46L 0.11 TCGA-BP-5198-01 2 168099752 168099752 C A XIRP2 Missense_Mutation p.T617N 0.38 probably_damaging(0.995) TCGA-BP-5198-01 2 179634604 179634604 C A TTN Nonsense_Mutation p.E2902* 0.11 TCGA-BP-5198-01 2 203407042 203407042 G T BMPR2 Missense_Mutation p.V429L 0.26 deleterious(0.01) possibly_damaging(0.67) TCGA-BP-5198-01 2 44145201 44145201 T A LRPPRC Missense_Mutation p.K1037N 0.34 tolerated(0.23) benign(0.003) TCGA-BP-5198-01 3 10191489 10191492 GATG - VHL Frame_Shift_Del p.R161Pfs*8 0.33 TCGA-BP-5198-01 3 110837556 110837556 A T PVRL3 Missense_Mutation p.N186Y 0.30 deleterious(0) probably_damaging(0.972) TCGA-BP-5198-01 3 145788846 145788846 C T PLOD2 Missense_Mutation p.V702M 0.25 tolerated(0.2) possibly_damaging(0.738) TCGA-BP-5198-01 3 47084168 47084175 TTATTTGT - SETD2 Frame_Shift_Del p.T2372Sfs*54 0.45 TCGA-BP-5198-01 3 52623121 52623122 AT - PBRM1 Frame_Shift_Del p.I977Rfs*4 0.42 TCGA-BP-5198-01 3 6903262 6903262 A C GRM7 Missense_Mutation p.S63R 0.20 tolerated(0.54) benign(0.001) TCGA-BP-5198-01 3 9724925 9724925 G A MTMR14 Missense_Mutation p.D321N 0.38 deleterious(0.03) probably_damaging(0.98) TCGA-BP-5198-01 4 86985418 86985418 C T MAPK10 Splice_Site p.X370_splice 0.03 TCGA-BP-5198-01 5 110434508 110434508 T G WDR36 Missense_Mutation p.I183S 0.13 tolerated(0.53) benign(0.039) TCGA-BP-5198-01 5 140256882 140256882 T C PCDHA12 Missense_Mutation p.Y609H 0.16 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-BP-5198-01 5 140954549 140954549 G T DIAPH1 Silent p.S542S 0.23 TCGA-BP-5198-01 5 156923994 156923994 A T ADAM19 Missense_Mutation p.M501K 0.12 deleterious(0.01) possibly_damaging(0.601) TCGA-BP-5198-01 5 16701663 16701663 G A MYO10 Silent p.F947F 0.35 TCGA-BP-5198-01 5 179225513 179225513 G A MGAT4B Silent p.D489D 0.25 TCGA-BP-5198-01 5 60170366 60170366 T C ERCC8 3'UTR 0.13 TCGA-BP-5198-01 6 167728871 167728871 C T UNC93A Silent p.N435N 0.02 TCGA-BP-5198-01 6 35423912 35423912 G A FANCE Missense_Mutation p.G213R 0.37 tolerated(0.19) benign(0.093) TCGA-BP-5198-01 6 74516670 74516670 A C CD109 Missense_Mutation p.K1022Q 0.08 deleterious(0.05) benign(0.156) TCGA-BP-5198-01 7 100607872 100607872 G A MUC3A Silent p.A673A 0.06 TCGA-BP-5198-01 7 141364002 141364002 T C KIAA1147 Missense_Mutation p.Y381C 0.19 tolerated(0.29) benign(0.004) TCGA-BP-5198-01 7 142481124 142481124 C T PRSS3P2 Intron 0.16 TCGA-BP-5198-01 7 27570888 27570888 G T HIBADH Missense_Mutation p.P259T 0.31 deleterious(0) probably_damaging(1) TCGA-BP-5198-01 7 72398925 72398925 G A POM121 Missense_Mutation p.R77H 0.29 deleterious(0.01) probably_damaging(0.972) TCGA-BP-5198-01 8 105507335 105507335 A T LRP12 Silent p.V561V 0.22 TCGA-BP-5198-01 8 11142463 11142463 C T MTMR9 Silent p.Y22Y 0.16 TCGA-BP-5198-01 8 113323219 113323219 G A CSMD3 Missense_Mutation p.P2625S 0.19 deleterious(0) probably_damaging(1) TCGA-BP-5198-01 8 120744220 120744221 - A TAF2 Frame_Shift_Ins p.T1182Yfs*37 0.25 TCGA-BP-5198-01 9 100899899 100899899 G C CORO2A Missense_Mutation p.N91K 0.19 tolerated(0.05) probably_damaging(0.954) TCGA-BP-5198-01 9 130687392 130687392 G C PIP5KL1 Missense_Mutation p.T304R 0.18 deleterious(0.04) possibly_damaging(0.613) TCGA-BP-5198-01 9 5463001 5463001 G A CD274 Missense_Mutation p.E188K 0.05 deleterious(0.03) benign(0.015) TCGA-BP-5198-01 9 79999563 79999563 T C VPS13A Intron 0.22 TCGA-BP-5199-01 10 104121490 104121490 C G GBF1 Missense_Mutation p.L502V 0.43 tolerated(0.08) benign(0.414) TCGA-BP-5199-01 10 112764372 112764372 A G SHOC2 Silent p.L327L 0.46 TCGA-BP-5199-01 10 31810616 31810616 G A ZEB1 Missense_Mutation p.D786N 0.35 tolerated(0.38) possibly_damaging(0.735) TCGA-BP-5199-01 10 5937075 5937075 G T FBXO18 Missense_Mutation p.G27W 0.33 deleterious_low_confidence(0) benign(0.085) TCGA-BP-5199-01 10 74326491 74326491 G T MICU1 Missense_Mutation p.H21N 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.581) TCGA-BP-5199-01 10 89720677 89720677 T G PTEN Missense_Mutation p.N276K 0.51 deleterious(0) probably_damaging(0.996) TCGA-BP-5199-01 10 89720741 89720741 C T PTEN Nonsense_Mutation p.Q298* 0.04 TCGA-BP-5199-01 11 111624250 111624251 TT - PPP2R1B Frame_Shift_Del p.I361Yfs*14 0.26 TCGA-BP-5199-01 11 126142904 126142904 G T FOXRED1 Missense_Mutation p.C116F 0.30 deleterious(0) benign(0.148) TCGA-BP-5199-01 11 126142905 126142905 T A FOXRED1 Nonsense_Mutation p.C116* 0.30 TCGA-BP-5199-01 11 58377371 58377371 A G ZFP91 Missense_Mutation p.R147G 0.30 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-BP-5199-01 11 64368297 64368297 G T SLC22A12 Missense_Mutation p.W495C 0.28 tolerated(0.18) possibly_damaging(0.524) TCGA-BP-5199-01 12 104126850 104126850 G A STAB2 Missense_Mutation p.D1784N 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-BP-5199-01 12 52312803 52312803 T C ACVRL1 Silent p.D427D 0.33 TCGA-BP-5199-01 12 52827998 52827998 G A KRT75 Missense_Mutation p.R31C 0.41 deleterious(0.04) benign(0.01) TCGA-BP-5199-01 12 56663289 56663289 T C COQ10A Missense_Mutation p.W174R 0.35 deleterious(0) probably_damaging(1) TCGA-BP-5199-01 12 993869 993869 C G WNK1 Missense_Mutation p.S1300C 0.26 deleterious(0) probably_damaging(0.996) TCGA-BP-5199-01 13 21742170 21742170 C T SKA3 Missense_Mutation p.E234K 0.32 deleterious(0.01) possibly_damaging(0.779) TCGA-BP-5199-01 13 27333002 27333002 C T GPR12 Silent p.P321P 0.16 TCGA-BP-5199-01 13 99948279 99948279 C G GPR183 Missense_Mutation p.V41L 0.06 tolerated(0.51) benign(0.009) TCGA-BP-5199-01 14 93299661 93299665 GATTA - GOLGA5 Frame_Shift_Del p.I639Yfs*5 0.26 TCGA-BP-5199-01 15 40268968 40268968 C A EIF2AK4 Silent p.P724P 0.24 TCGA-BP-5199-01 15 45962137 45962137 A G SQRDL Silent p.R139R 0.27 TCGA-BP-5199-01 15 58904077 58904077 A G ADAM10 Missense_Mutation p.L542P 0.26 tolerated(0.26) benign(0.432) TCGA-BP-5199-01 15 64967277 64967280 GAAA - ZNF609 Frame_Shift_Del p.E742Vfs*3 0.33 TCGA-BP-5199-01 15 85405941 85405941 T C ALPK3 Missense_Mutation p.L1604P 0.33 deleterious(0) probably_damaging(0.999) TCGA-BP-5199-01 16 2809634 2809634 G T SRRM2 Missense_Mutation p.A269S 0.38 unknown(0) TCGA-BP-5199-01 16 31213020 31213020 C G PYCARD Missense_Mutation p.K158N 0.33 deleterious(0) probably_damaging(0.949) TCGA-BP-5199-01 16 4920562 4920562 G T UBN1 Missense_Mutation p.G453C 0.35 tolerated(0.31) probably_damaging(0.962) TCGA-BP-5199-01 16 53878083 53878083 T G FTO Missense_Mutation p.S256R 0.30 tolerated(0.38) benign(0.024) TCGA-BP-5199-01 16 67318935 67318935 C T PLEKHG4 Missense_Mutation p.P671L 0.29 tolerated(0.08) benign(0.119) TCGA-BP-5199-01 16 67974104 67974117 GCCCACGCCGTAAA - LCAT Frame_Shift_Del p.L338Pfs*24 0.30 TCGA-BP-5199-01 16 89789584 89789584 G A ZNF276 Silent p.A183A 0.34 TCGA-BP-5199-01 17 10369589 10369589 C T MYH4 Splice_Site p.X116_splice 0.17 TCGA-BP-5199-01 17 1549792 1549792 A T RILP Missense_Mutation p.C384S 0.31 tolerated_low_confidence(0.12) probably_damaging(0.987) TCGA-BP-5199-01 17 39884564 39884564 C A HAP1 Missense_Mutation p.M363I 0.11 tolerated(0.22) benign(0.043) TCGA-BP-5199-01 17 42255170 42255170 G A ASB16 Intron 0.32 TCGA-BP-5199-01 17 53027421 53027421 A G TOM1L1 Missense_Mutation p.D435G 0.31 tolerated(0.18) benign(0.118) TCGA-BP-5199-01 17 61908394 61908394 A G PSMC5 Splice_Site p.X227_splice 0.28 TCGA-BP-5199-01 18 33706569 33706569 A C SLC39A6 Missense_Mutation p.H134Q 0.13 tolerated(0.06) benign(0.282) TCGA-BP-5199-01 19 11597661 11597661 C A ZNF653 Missense_Mutation p.A460S 0.21 deleterious(0.02) possibly_damaging(0.784) TCGA-BP-5199-01 19 18543023 18543023 A G SSBP4 Missense_Mutation p.M235V 0.34 deleterious(0.02) possibly_damaging(0.596) TCGA-BP-5199-01 19 40582092 40582092 T C ZNF780A Missense_Mutation p.E87G 0.34 tolerated(0.05) benign(0.214) TCGA-BP-5199-01 19 43348720 43348720 C T PSG10P RNA 0.28 TCGA-BP-5199-01 19 48198183 48198183 C A GLTSCR1 Missense_Mutation p.N974K 0.26 possibly_damaging(0.546) TCGA-BP-5199-01 19 51228703 51228703 C T CLEC11A Silent p.Y317Y 0.48 TCGA-BP-5199-01 19 53889703 53889703 T A ZNF525 3'Flank 0.29 TCGA-BP-5199-01 19 53889727 53889727 A G ZNF525 3'Flank 0.31 TCGA-BP-5199-01 1 11876723 11876723 G A CLCN6 Missense_Mutation p.V89I 0.29 tolerated(1) benign(0.065) TCGA-BP-5199-01 1 11876724 11876724 T C CLCN6 Missense_Mutation p.V89A 0.29 deleterious(0) possibly_damaging(0.725) TCGA-BP-5199-01 1 151263418 151263418 C A ZNF687 Silent p.S1149S 0.38 TCGA-BP-5199-01 1 173703125 173703125 A T KLHL20 Silent p.G99G 0.28 TCGA-BP-5199-01 1 186113746 186113746 G T HMCN1 Missense_Mutation p.G4726V 0.32 benign(0.001) TCGA-BP-5199-01 1 196876024 196876024 G C CFHR4 Missense_Mutation p.R157T 0.30 tolerated(0.65) probably_damaging(0.963) TCGA-BP-5199-01 1 197091068 197091068 T C ASPM Missense_Mutation p.K1283E 0.24 deleterious(0) benign(0.41) TCGA-BP-5199-01 1 197091070 197091070 A G ASPM Missense_Mutation p.L1282P 0.24 deleterious(0) probably_damaging(0.95) TCGA-BP-5199-01 1 201029896 201029896 T G CACNA1S Missense_Mutation p.I1102L 0.29 deleterious(0.02) possibly_damaging(0.696) TCGA-BP-5199-01 1 27106455 27106460 AGAACG CGAAC ARID1A Frame_Shift_Del p.K2025Sfs*5 0.23 TCGA-BP-5199-01 1 27690800 27690800 C A MAP3K6 Missense_Mutation p.G197V 0.30 tolerated(0.32) possibly_damaging(0.69) TCGA-BP-5199-01 1 78481811 78481811 G A DNAJB4 Silent p.L298L 0.33 TCGA-BP-5199-01 1 9324048 9324048 G T H6PD Missense_Mutation p.R499L 0.03 deleterious(0) probably_damaging(0.959) TCGA-BP-5199-01 20 22563680 22563680 C - FOXA2 Frame_Shift_Del p.G67Afs*3 0.30 TCGA-BP-5199-01 20 51871758 51871758 G T TSHZ2 Silent p.L587L 0.05 TCGA-BP-5199-01 22 43024287 43024287 C A CYB5R3 Missense_Mutation p.V145F 0.33 deleterious(0.04) probably_damaging(0.977) TCGA-BP-5199-01 2 11312070 11312070 G A PQLC3 Missense_Mutation p.S125N 0.34 deleterious(0) possibly_damaging(0.712) TCGA-BP-5199-01 2 135076310 135076310 G C MGAT5 Missense_Mutation p.E191D 0.40 deleterious(0.01) benign(0.189) TCGA-BP-5199-01 2 27601531 27601531 G A ZNF513 Missense_Mutation p.T201I 0.14 deleterious(0) possibly_damaging(0.803) TCGA-BP-5199-01 2 98914472 98914472 C A VWA3B Missense_Mutation p.A1087D 0.21 deleterious(0) probably_damaging(0.992) TCGA-BP-5199-01 4 113510905 113510905 A G C4orf21 Silent p.D1034D 0.33 TCGA-BP-5199-01 4 113540563 113540564 - A C4orf21 Frame_Shift_Ins p.Y212Lfs*11 0.27 TCGA-BP-5199-01 4 1941230 1941230 G C WHSC1 Intron 0.27 TCGA-BP-5199-01 5 140229361 140229361 G A PCDHA9 Silent p.A427A 0.37 TCGA-BP-5199-01 5 150905349 150905349 A G FAT2 Missense_Mutation p.W3496R 0.31 benign(0.008) TCGA-BP-5199-01 5 86627234 86627238 TTATC - RASA1 Frame_Shift_Del p.L205Kfs*4 0.30 TCGA-BP-5199-01 5 916051 916051 G C TRIP13 Missense_Mutation p.R389T 0.39 deleterious(0) probably_damaging(0.991) TCGA-BP-5199-01 6 10802230 10802230 A T MAK Silent p.V242V 0.13 TCGA-BP-5199-01 6 43305844 43305844 C T ZNF318 Silent p.K1964K 0.34 TCGA-BP-5199-01 7 139529248 139529248 T C TBXAS1 Missense_Mutation p.L21P 0.22 deleterious(0) probably_damaging(0.969) TCGA-BP-5199-01 7 150325294 150325294 T C GIMAP6 Missense_Mutation p.Q131R 0.28 deleterious(0) probably_damaging(0.99) TCGA-BP-5199-01 7 155596300 155596300 T C SHH Missense_Mutation p.D228G 0.23 tolerated(0.1) probably_damaging(0.996) TCGA-BP-5199-01 7 4014046 4014046 G A SDK1 Silent p.T621T 0.24 TCGA-BP-5199-01 7 70886059 70886059 G T WBSCR17 Missense_Mutation p.W310C 0.31 deleterious(0) probably_damaging(0.998) TCGA-BP-5199-01 7 99669413 99669413 C T ZNF3 Missense_Mutation p.E232K 0.30 deleterious(0.01) possibly_damaging(0.661) TCGA-BP-5199-01 8 97621837 97621837 A C SDC2 3'UTR 0.31 TCGA-BP-5199-01 8 99054891 99054891 G C RPL30 Missense_Mutation p.L94V 0.27 deleterious(0.03) benign(0.197) TCGA-BP-5199-01 9 113238449 113238449 T G SVEP1 Intron 0.36 TCGA-BP-5199-01 9 140126522 140126522 A T SLC34A3 Splice_Site p.X29_splice 0.23 TCGA-BP-5199-01 9 32634993 32634993 C G TAF1L Missense_Mutation p.L195F 0.04 tolerated_low_confidence(0.54) benign(0.002) TCGA-BP-5199-01 9 74305109 74305109 C T TMEM2 Silent p.V1250V 0.24 TCGA-BP-5199-01 X 102841696 102841696 A T TCEAL4 Missense_Mutation p.E31D 0.69 tolerated(0.28) benign(0.038) TCGA-BP-5199-01 X 107681171 107681171 C A COL4A6 Splice_Site p.X22_splice 0.55 TCGA-BP-5199-01 X 11781972 11781973 - ATCC MSL3 Frame_Shift_Ins p.Y277Sfs*3 0.68 TCGA-BP-5199-01 X 129354384 129354384 T - ZNF280C Frame_Shift_Del p.K489Rfs*8 0.19 TCGA-BP-5199-01 X 22002497 22002497 G T SMS Missense_Mutation p.D276Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-BP-5199-01 X 86890699 86890699 G A KLHL4 Missense_Mutation p.G617R 0.61 deleterious(0) possibly_damaging(0.543) TCGA-BP-5200-01 10 118305651 118305651 G C PNLIP Splice_Site p.X16_splice 0.31 TCGA-BP-5200-01 10 17750824 17750824 C T STAM Missense_Mutation p.A420V 0.16 tolerated(0.3) benign(0.007) TCGA-BP-5200-01 11 113133587 113133587 T C NCAM1 Intron 0.34 TCGA-BP-5200-01 11 66619326 66619326 G A PC Silent p.F639F 0.26 TCGA-BP-5200-01 11 96074938 96074938 C T MAML2 Missense_Mutation p.R41Q 0.09 possibly_damaging(0.857) TCGA-BP-5200-01 12 120649783 120649783 A T PXN 3'UTR 0.32 TCGA-BP-5200-01 12 124107227 124107227 G A EIF2B1 Missense_Mutation p.R237W 0.03 deleterious(0.02) probably_damaging(0.968) TCGA-BP-5200-01 13 20024477 20024477 T G TPTE2 Missense_Mutation p.R270S 0.27 deleterious(0.03) benign(0.444) TCGA-BP-5200-01 14 103395248 103395248 T C AMN Missense_Mutation p.F150S 0.27 deleterious(0) probably_damaging(0.999) TCGA-BP-5200-01 14 105414503 105414503 C G AHNAK2 Missense_Mutation p.D2429H 0.32 benign(0.032) TCGA-BP-5200-01 14 22133740 22133740 C T OR4E2 Silent p.L148L 0.34 TCGA-BP-5200-01 14 23468257 23468257 G A C14orf93 5'UTR 0.18 TCGA-BP-5200-01 14 23468258 23468258 C T C14orf93 5'UTR 0.18 TCGA-BP-5200-01 14 50100543 50100543 C T DNAAF2 Missense_Mutation p.R442K 0.42 tolerated(0.69) benign(0.002) TCGA-BP-5200-01 15 48054430 48054430 T G SEMA6D Missense_Mutation p.F191C 0.37 deleterious(0) probably_damaging(1) TCGA-BP-5200-01 16 89753117 89753117 G C CDK10 5'UTR 0.31 TCGA-BP-5200-01 17 11572453 11572453 C G DNAH9 Missense_Mutation p.P935R 0.27 probably_damaging(0.998) TCGA-BP-5200-01 17 18682177 18682177 C A FBXW10 Missense_Mutation p.P909T 0.12 deleterious(0) probably_damaging(1) TCGA-BP-5200-01 17 48212737 48212737 C G PPP1R9B Missense_Mutation p.E803Q 0.25 deleterious(0.01) benign(0.33) TCGA-BP-5200-01 17 4876239 4876239 G T CAMTA2 Missense_Mutation p.F799L 0.26 tolerated(0.06) probably_damaging(0.983) TCGA-BP-5200-01 17 56060482 56060482 C T VEZF1 Silent p.V102V 0.37 TCGA-BP-5200-01 17 67189255 67189255 C G ABCA10 Missense_Mutation p.L592F 0.08 deleterious(0.03) probably_damaging(0.985) TCGA-BP-5200-01 18 60242521 60242521 C A ZCCHC2 Missense_Mutation p.N1069K 0.07 deleterious(0.01) benign(0.175) TCGA-BP-5200-01 18 60242522 60242522 C A ZCCHC2 Missense_Mutation p.Q1070K 0.07 tolerated(0.07) probably_damaging(0.921) TCGA-BP-5200-01 19 40398046 40398046 A G FCGBP Silent p.C2307C 0.14 TCGA-BP-5200-01 19 42341277 42341277 G A LYPD4 Silent p.S227S 0.29 TCGA-BP-5200-01 1 156206204 156206204 C T PMF1 Missense_Mutation p.P145S 0.06 deleterious_low_confidence(0.05) probably_damaging(0.932) TCGA-BP-5200-01 1 214813680 214813680 A C CENPF Missense_Mutation p.T667P 0.21 probably_damaging(0.919) TCGA-BP-5200-01 1 247614532 247614532 G A OR2B11 Silent p.I251I 0.19 TCGA-BP-5200-01 1 3519075 3519075 T - MEGF6 Frame_Shift_Del p.K74Rfs*104 0.28 TCGA-BP-5200-01 1 65247119 65247121 TGC A RAVER2 Frame_Shift_Del p.A282Gfs*4 0.12 TCGA-BP-5200-01 1 84610143 84610143 C A PRKACB Missense_Mutation p.H33Q 0.19 tolerated(0.34) benign(0.001) TCGA-BP-5200-01 2 118578782 118578782 A G DDX18 Missense_Mutation p.N187S 0.31 tolerated(1) benign(0) TCGA-BP-5200-01 2 219457120 219457120 A C RQCD1 Missense_Mutation p.I212L 0.27 deleterious(0.01) possibly_damaging(0.844) TCGA-BP-5200-01 2 228564091 228564091 C A SLC19A3 Missense_Mutation p.G114W 0.27 deleterious(0) probably_damaging(1) TCGA-BP-5200-01 2 26435464 26435464 T C HADHA Missense_Mutation p.D317G 0.25 tolerated(0.26) benign(0.004) TCGA-BP-5200-01 2 39564108 39564108 C T MAP4K3 Missense_Mutation p.G123R 0.19 deleterious(0) probably_damaging(0.999) TCGA-BP-5200-01 2 68371743 68371743 G T WDR92 Missense_Mutation p.P130H 0.27 deleterious(0) probably_damaging(0.996) TCGA-BP-5200-01 3 52643743 52643743 T C PBRM1 Missense_Mutation p.Y718C 0.43 deleterious(0) probably_damaging(0.97) TCGA-BP-5200-01 4 159754698 159754698 G T FNIP2 Missense_Mutation p.E191D 0.12 tolerated(0.09) benign(0.315) TCGA-BP-5200-01 4 77932908 77932908 A G SEPT11 Missense_Mutation p.Y120C 0.14 deleterious(0) probably_damaging(0.992) TCGA-BP-5200-01 5 140024201 140024201 A G TMCO6 Missense_Mutation p.Y415C 0.09 deleterious(0.01) probably_damaging(1) TCGA-BP-5200-01 5 33683193 33683193 A T ADAMTS12 Missense_Mutation p.F282Y 0.17 deleterious(0.04) probably_damaging(1) TCGA-BP-5200-01 5 60241123 60241123 C - NDUFAF2 Frame_Shift_Del p.S14Cfs*6 0.12 TCGA-BP-5200-01 5 79769670 79769670 T A ZFYVE16 Missense_Mutation p.C1429S 0.48 deleterious(0) probably_damaging(0.928) TCGA-BP-5200-01 6 100390871 100390871 C A MCHR2 Missense_Mutation p.V181F 0.17 tolerated(0.05) benign(0.006) TCGA-BP-5200-01 6 33259932 33259932 A G RGL2 Missense_Mutation p.S761P 0.28 deleterious(0) probably_damaging(0.958) TCGA-BP-5200-01 6 56468870 56468870 G T DST Intron 0.19 TCGA-BP-5200-01 9 104187208 104187208 G A ALDOB Silent p.L306L 0.15 TCGA-BP-5200-01 9 131245102 131245102 T C ODF2 Missense_Mutation p.L308P 0.31 tolerated(0.27) benign(0.183) TCGA-BP-5200-01 X 101092585 101092585 T A NXF5 Missense_Mutation p.N321Y 0.61 tolerated(0.06) benign(0.071) TCGA-BP-5200-01 X 49173751 49173751 G A GAGE10 Silent p.V104V 0.64 TCGA-BP-5201-01 10 94239093 94239093 A G IDE Missense_Mutation p.Y609H 0.38 deleterious(0) probably_damaging(0.998) TCGA-BP-5201-01 11 118454666 118454666 C T ARCN1 Missense_Mutation p.A197V 0.47 tolerated(0.37) benign(0.002) TCGA-BP-5201-01 11 34938126 34938126 G T PDHX 5'UTR 0.50 TCGA-BP-5201-01 11 63998312 63998312 T C DNAJC4 5'UTR 0.29 TCGA-BP-5201-01 12 104476292 104476293 - T HCFC2 Frame_Shift_Ins p.G262Wfs*6 0.31 TCGA-BP-5201-01 12 14804348 14804348 G C GUCY2C Missense_Mutation p.S568C 0.05 deleterious(0) probably_damaging(1) TCGA-BP-5201-01 12 98927778 98927778 G T TMPO Missense_Mutation p.Q581H 0.23 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BP-5201-01 14 102493805 102493805 C A DYNC1H1 Missense_Mutation p.A2991E 0.06 possibly_damaging(0.694) TCGA-BP-5201-01 14 105407539 105407539 G A AHNAK2 Missense_Mutation p.S4750L 0.06 benign(0.142) TCGA-BP-5201-01 16 3139570 3139570 G A ZSCAN10 Missense_Mutation p.A567V 0.45 tolerated(0.32) benign(0.234) TCGA-BP-5201-01 16 88872184 88872184 T G CDT1 Missense_Mutation p.Y247D 0.32 deleterious(0) probably_damaging(1) TCGA-BP-5201-01 17 17700112 17700112 G A RAI1 Missense_Mutation p.G1284S 0.06 tolerated(0.57) benign(0.007) TCGA-BP-5201-01 17 27251182 27251182 C T PHF12 Missense_Mutation p.A154T 0.25 tolerated(0.11) possibly_damaging(0.604) TCGA-BP-5201-01 17 39553695 39553695 C T KRT31 Missense_Mutation p.G33R 0.30 tolerated(0.05) probably_damaging(0.987) TCGA-BP-5201-01 17 41169909 41169909 T A VAT1 Missense_Mutation p.T269S 0.32 tolerated(0.06) possibly_damaging(0.579) TCGA-BP-5201-01 17 57430716 57430716 C A YPEL2 5'UTR 0.37 TCGA-BP-5201-01 17 7480257 7480257 T A EIF4A1 Intron 0.29 TCGA-BP-5201-01 18 33734957 33734957 T G ELP2 Missense_Mutation p.S489A 0.49 tolerated(0.15) benign(0.009) TCGA-BP-5201-01 18 6980564 6980564 C T LAMA1 Missense_Mutation p.R1988K 0.14 tolerated(0.65) benign(0.002) TCGA-BP-5201-01 19 19637065 19637065 C T NDUFA13 Missense_Mutation p.R57C 0.27 deleterious(0) probably_damaging(0.996) TCGA-BP-5201-01 19 5699087 5699087 G C LONP1 Missense_Mutation p.R546G 0.22 deleterious(0) probably_damaging(0.995) TCGA-BP-5201-01 1 145438912 145438912 A G TXNIP Missense_Mutation p.E37G 0.31 tolerated(0.46) benign(0.019) TCGA-BP-5201-01 1 155732098 155732098 C A GON4L Silent p.R1598R 0.30 TCGA-BP-5201-01 1 248402861 248402861 G A OR2M4 Missense_Mutation p.V211I 0.04 tolerated(0.73) benign(0.168) TCGA-BP-5201-01 1 38323150 38323150 C A MTF1 Nonsense_Mutation p.E61* 0.38 TCGA-BP-5201-01 1 95310848 95310848 C A SLC44A3 Silent p.V300V 0.05 TCGA-BP-5201-01 20 3653456 3653456 G A ADAM33 Missense_Mutation p.A408V 0.32 tolerated(0.23) benign(0.012) TCGA-BP-5201-01 20 37150191 37150191 C T RALGAPB Missense_Mutation p.S490F 0.34 tolerated(0.57) benign(0.391) TCGA-BP-5201-01 21 35153771 35153771 C A ITSN1 Missense_Mutation p.Q535K 0.08 tolerated(0.11) probably_damaging(0.968) TCGA-BP-5201-01 2 166731299 166731299 A C TTC21B Missense_Mutation p.I1306R 0.03 deleterious(0) probably_damaging(0.999) TCGA-BP-5201-01 2 55489500 55489500 T C MTIF2 Missense_Mutation p.I95V 0.03 tolerated(0.28) benign(0.001) TCGA-BP-5201-01 2 73680768 73680768 A C ALMS1 Missense_Mutation p.M2371L 0.34 benign(0.049) TCGA-BP-5201-01 3 10188245 10188245 G C VHL Missense_Mutation p.V130L 0.54 deleterious(0.01) possibly_damaging(0.68) TCGA-BP-5201-01 3 112998188 112998188 A C BOC Missense_Mutation p.I636L 0.38 deleterious(0) possibly_damaging(0.666) TCGA-BP-5201-01 3 196022891 196022891 C T TCTEX1D2 Missense_Mutation p.D123N 0.29 deleterious(0) probably_damaging(0.992) TCGA-BP-5201-01 3 29476296 29476296 C A RBMS3 Missense_Mutation p.S46R 0.06 deleterious(0.05) benign(0.029) TCGA-BP-5201-01 3 52597340 52597340 G - PBRM1 Intron 0.29 TCGA-BP-5201-01 4 96035969 96035969 G T BMPR1B Missense_Mutation p.C111F 0.30 deleterious(0) benign(0.28) TCGA-BP-5201-01 5 78407701 78407701 C A BHMT 5'UTR 0.43 TCGA-BP-5201-01 5 96315099 96315099 A G LNPEP Missense_Mutation p.T93A 0.23 tolerated(0.68) benign(0.001) TCGA-BP-5201-01 6 13621069 13621069 A - AL441883.1 Frame_Shift_Del p.L18* 0.29 TCGA-BP-5201-01 6 4032531 4032531 T A PRPF4B Missense_Mutation p.D260E 0.03 tolerated_low_confidence(0.2) benign(0.026) TCGA-BP-5201-01 6 88046871 88046871 T C SMIM8 Missense_Mutation p.L41P 0.24 deleterious(0) probably_damaging(1) TCGA-BP-5201-01 7 127014099 127014100 - T ZNF800 Frame_Shift_Ins p.L431Ifs*9 0.28 TCGA-BP-5201-01 7 6006558 6006558 C T RSPH10B Missense_Mutation p.V64I 0.18 tolerated(0.2) benign(0.002) TCGA-BP-5201-01 7 92763473 92763473 T C SAMD9L Silent p.L604L 0.38 TCGA-BP-5201-01 8 101014479 101014479 T G RGS22 Missense_Mutation p.K914T 0.34 deleterious(0.03) possibly_damaging(0.71) TCGA-BP-5201-01 8 10396087 10396087 C G PRSS55 Silent p.T281T 0.18 TCGA-BP-5201-01 8 133850030 133850030 T C PHF20L1 Missense_Mutation p.I722T 0.32 tolerated(0.8) benign(0.003) TCGA-BP-5201-01 8 51415372 51415372 C T SNTG1 Missense_Mutation p.T133I 0.23 deleterious(0) probably_damaging(0.959) TCGA-BP-5201-01 8 57228684 57228684 C T SDR16C5 Missense_Mutation p.E75K 0.04 tolerated(0.07) benign(0.094) TCGA-BP-5201-01 9 140137408 140137408 C A TUBB4B Silent p.L246L 0.23 TCGA-BP-5201-01 9 33467191 33467191 C A NOL6 Nonsense_Mutation p.E599* 0.13 TCGA-BP-5201-01 X 44928976 44928976 G A KDM6A Silent p.Q692Q 0.74 TCGA-BP-5202-01 10 123353298 123353298 C T FGFR2 Missense_Mutation p.V12M 0.05 tolerated_low_confidence(0.11) benign(0.007) TCGA-BP-5202-01 11 61981221 61981221 G C SCGB2A1 Missense_Mutation p.W89C 0.05 tolerated(0.11) probably_damaging(0.926) TCGA-BP-5202-01 11 66359599 66359599 C A CCDC87 Missense_Mutation p.R296S 0.27 tolerated(0.76) benign(0.016) TCGA-BP-5202-01 12 51696509 51696509 G A BIN2 Silent p.S91S 0.33 TCGA-BP-5202-01 12 57908819 57908819 A G MARS Missense_Mutation p.I728V 0.30 tolerated(0.32) benign(0.045) TCGA-BP-5202-01 12 67698394 67698394 A G CAND1 Missense_Mutation p.I435V 0.31 tolerated(0.6) benign(0.021) TCGA-BP-5202-01 14 65208079 65208079 G A PLEKHG3 Missense_Mutation p.R559Q 0.32 deleterious(0.03) possibly_damaging(0.611) TCGA-BP-5202-01 15 51520122 51520122 C G CYP19A1 Missense_Mutation p.S102T 0.33 deleterious(0.02) benign(0.038) TCGA-BP-5202-01 15 99482525 99482525 C T IGF1R Silent p.F1131F 0.12 TCGA-BP-5202-01 16 4245640 4245640 C T SRL Missense_Mutation p.G175D 0.29 deleterious(0) probably_damaging(1) TCGA-BP-5202-01 16 89793740 89793740 G C ZNF276 Missense_Mutation p.D354H 0.29 deleterious(0.02) probably_damaging(0.979) TCGA-BP-5202-01 17 12893426 12893426 C T ARHGAP44 Missense_Mutation p.R799W 0.05 deleterious_low_confidence(0) benign(0.332) TCGA-BP-5202-01 17 1559690 1559690 T C PRPF8 Missense_Mutation p.Y1930C 0.03 deleterious(0.02) benign(0.113) TCGA-BP-5202-01 17 35600351 35600351 T C ACACA Missense_Mutation p.K956R 0.33 tolerated(1) benign(0.047) TCGA-BP-5202-01 17 7246741 7246741 G A ACAP1 Missense_Mutation p.G130R 0.22 tolerated(0.05) benign(0.02) TCGA-BP-5202-01 19 10668296 10668296 C G KRI1 Missense_Mutation p.D523H 0.29 deleterious(0.04) probably_damaging(0.973) TCGA-BP-5202-01 19 9069219 9069219 G A MUC16 Missense_Mutation p.P6076L 0.36 unknown(0) TCGA-BP-5202-01 1 11709907 11709907 A C FBXO2 Missense_Mutation p.I182M 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-BP-5202-01 1 152185823 152185823 C A HRNR Missense_Mutation p.R2761L 0.30 unknown(0) TCGA-BP-5202-01 1 161089670 161089683 GCCTATGTGTGAAA - NIT1 Frame_Shift_Del p.P174Qfs*10 0.37 TCGA-BP-5202-01 1 203276485 203276485 T A BTG2 Nonsense_Mutation p.C132* 0.32 TCGA-BP-5202-01 1 203465247 203465247 C T OPTC Silent p.G38G 0.28 TCGA-BP-5202-01 1 211486237 211486237 T A RCOR3 Silent p.T417T 0.37 TCGA-BP-5202-01 1 227618218 227618218 G T CTD-2090I13.1 RNA 0.21 TCGA-BP-5202-01 1 26517881 26517881 C T CATSPER4 Missense_Mutation p.A106V 0.35 deleterious(0.04) probably_damaging(0.948) TCGA-BP-5202-01 1 2938986 2938986 G A ACTRT2 Missense_Mutation p.D246N 0.25 deleterious(0.01) probably_damaging(0.927) TCGA-BP-5202-01 21 30415852 30415852 G T USP16 Missense_Mutation p.D430Y 0.23 deleterious(0.01) benign(0.028) TCGA-BP-5202-01 22 36900193 36900193 C T FOXRED2 Missense_Mutation p.R334Q 0.31 deleterious(0.04) possibly_damaging(0.552) TCGA-BP-5202-01 22 50685358 50685358 G A HDAC10 Missense_Mutation p.A487V 0.25 tolerated(0.91) benign(0.011) TCGA-BP-5202-01 2 99226157 99226157 A T UNC50 Intron 0.31 TCGA-BP-5202-01 3 130283940 130283940 G T COL6A6 Missense_Mutation p.S255I 0.09 tolerated(1) probably_damaging(0.999) TCGA-BP-5202-01 3 37032782 37032787 TCCCAA G EPM2AIP1 Frame_Shift_Del p.W595* 0.25 TCGA-BP-5202-01 3 52883890 52883890 C A TMEM110 Missense_Mutation p.M115I 0.07 deleterious(0.01) probably_damaging(0.977) TCGA-BP-5202-01 4 106848559 106848561 GTT - NPNT In_Frame_Del p.G80_Y81delinsD 0.32 TCGA-BP-5202-01 4 46043264 46043264 G T GABRG1 Missense_Mutation p.P380H 0.32 tolerated(0.05) benign(0.281) TCGA-BP-5202-01 4 79296891 79296891 A T FRAS1 Splice_Site p.X1051_splice 0.35 TCGA-BP-5202-01 4 8469669 8469669 A G TRMT44 Missense_Mutation p.Y508C 0.28 deleterious(0) possibly_damaging(0.638) TCGA-BP-5202-01 5 79616434 79616434 G A SPZ1 Missense_Mutation p.E134K 0.17 tolerated_low_confidence(0.23) benign(0.256) TCGA-BP-5202-01 5 79616440 79616440 G C SPZ1 Missense_Mutation p.E136Q 0.15 tolerated_low_confidence(0.09) benign(0.424) TCGA-BP-5202-01 6 125231888 125231888 T G RP11-510H23.1 RNA 0.30 TCGA-BP-5202-01 6 159146585 159146585 A G SYTL3 Silent p.K257K 0.04 TCGA-BP-5202-01 7 107564469 107564469 C G LAMB1 Missense_Mutation p.R1763T 0.32 tolerated(0.21) benign(0.039) TCGA-BP-5202-01 7 73097664 73097664 G A DNAJC30 Silent p.S30S 0.32 TCGA-BP-5202-01 8 10470413 10470413 C T RP1L1 Missense_Mutation p.G399R 0.09 benign(0.017) TCGA-BP-5202-01 8 68107615 68107615 A G CSPP1 Splice_Site p.X1152_splice 0.29 TCGA-BP-5202-01 9 107361334 107361334 C G OR13C5 Missense_Mutation p.D121H 0.26 deleterious(0) probably_damaging(0.999) TCGA-BP-5202-01 9 119976970 119976970 A G ASTN2 Missense_Mutation p.Y228H 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-BP-5202-01 X 100879926 100879926 G A ARMCX3 5'UTR 0.68 TCGA-BP-5202-01 X 53253992 53253992 G - KDM5C Frame_Shift_Del p.P27Lfs*46 0.56 TCGA-BP-5202-01 X 54954164 54954164 C T TRO Missense_Mutation p.R610C 0.06 tolerated(0.06) unknown(0) TCGA-CJ-4634-01 10 17151672 17151672 A G CUBN Missense_Mutation p.C360R 0.37 deleterious(0) probably_damaging(1) TCGA-CJ-4634-01 10 71692318 71692318 A T COL13A1 Silent p.G551G 0.28 TCGA-CJ-4634-01 10 71692319 71692319 G T COL13A1 Nonsense_Mutation p.E552* 0.28 TCGA-CJ-4634-01 11 45955418 45955418 A T PHF21A 3'UTR 0.47 TCGA-CJ-4634-01 11 60785278 60785278 C A CD6 Missense_Mutation p.H544N 0.35 tolerated(0.39) benign(0.184) TCGA-CJ-4634-01 11 62473058 62473058 C G BSCL2 Missense_Mutation p.G40A 0.25 deleterious_low_confidence(0.02) benign(0.008) TCGA-CJ-4634-01 12 108686307 108686307 C T CMKLR1 Missense_Mutation p.V145I 0.37 tolerated(0.1) probably_damaging(0.923) TCGA-CJ-4634-01 12 121176678 121176678 G A ACADS Missense_Mutation p.R330H 0.26 deleterious(0.03) probably_damaging(0.984) TCGA-CJ-4634-01 12 122481799 122481799 C - BCL7A Frame_Shift_Del p.N93Kfs*70 0.27 TCGA-CJ-4634-01 12 31256928 31256928 C G DDX11 Silent p.G958G 0.25 TCGA-CJ-4634-01 12 52760791 52760791 C G KRT85 Missense_Mutation p.R133S 0.28 deleterious(0) benign(0.089) TCGA-CJ-4634-01 12 53818668 53818668 T - AMHR2 Frame_Shift_Del p.Q138Rfs*71 0.33 TCGA-CJ-4634-01 12 9305470 9305471 - GTTT PZP Frame_Shift_Ins p.C1358Nfs*32 0.30 TCGA-CJ-4634-01 13 23907504 23907504 A - SACS Frame_Shift_Del p.L3504Yfs*22 0.11 TCGA-CJ-4634-01 13 36521538 36521538 C T DCLK1 Silent p.P260P 0.35 TCGA-CJ-4634-01 13 42740809 42740809 G A DGKH Missense_Mutation p.G373S 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-CJ-4634-01 13 48669206 48669206 C G MED4 Silent p.A3A 0.46 TCGA-CJ-4634-01 14 102510612 102510612 G A DYNC1H1 Missense_Mutation p.G4229D 0.45 probably_damaging(0.969) TCGA-CJ-4634-01 14 104441754 104441754 G C TDRD9 Missense_Mutation p.C292S 0.33 tolerated(0.18) benign(0.326) TCGA-CJ-4634-01 14 61190108 61190108 A T SIX4 Missense_Mutation p.C229S 0.29 deleterious(0) possibly_damaging(0.759) TCGA-CJ-4634-01 14 62200986 62200986 T A HIF1A Nonsense_Mutation p.C361* 0.30 TCGA-CJ-4634-01 14 69520975 69520975 C T DCAF5 Missense_Mutation p.G810S 0.39 tolerated_low_confidence(0.07) benign(0.019) TCGA-CJ-4634-01 15 34651395 34651395 G A LPCAT4 Missense_Mutation p.S503L 0.35 tolerated(0.12) benign(0.001) TCGA-CJ-4634-01 15 41188258 41188258 G C VPS18 Missense_Mutation p.G72R 0.33 deleterious(0.01) benign(0.118) TCGA-CJ-4634-01 16 24185869 24185869 G C PRKCB Silent p.L454L 0.08 TCGA-CJ-4634-01 16 67324887 67324887 G C KCTD19 Silent p.T856T 0.16 TCGA-CJ-4634-01 17 34943427 34943427 A C GGNBP2 Missense_Mutation p.I548L 0.41 tolerated_low_confidence(0.27) benign(0.01) TCGA-CJ-4634-01 17 43552739 43552739 T C PLEKHM1 Missense_Mutation p.K217R 0.36 tolerated(0.09) possibly_damaging(0.728) TCGA-CJ-4634-01 17 66924117 66924117 A G ABCA8 Silent p.L405L 0.37 TCGA-CJ-4634-01 17 8647475 8647475 C T CCDC42 Silent p.S37S 0.21 TCGA-CJ-4634-01 18 13612656 13612657 - G LDLRAD4 Intron 0.31 TCGA-CJ-4634-01 18 18571174 18571174 A G ROCK1 Silent p.H702H 0.04 TCGA-CJ-4634-01 18 22806642 22806642 A C ZNF521 Missense_Mutation p.L414V 0.36 tolerated(0.36) benign(0.01) TCGA-CJ-4634-01 18 56601783 56601783 C T ZNF532 Missense_Mutation p.S822L 0.08 tolerated(0.06) benign(0.239) TCGA-CJ-4634-01 18 6215828 6215828 G C L3MBTL4 Missense_Mutation p.P264R 0.30 deleterious(0.04) possibly_damaging(0.48) TCGA-CJ-4634-01 19 14743789 14743789 A G EMR3 Silent p.I529I 0.05 TCGA-CJ-4634-01 19 2252973 2252973 C A JSRP1 Missense_Mutation p.A156S 0.31 tolerated(0.07) possibly_damaging(0.866) TCGA-CJ-4634-01 19 23836056 23836056 C G ZNF675 Missense_Mutation p.G560A 0.03 deleterious(0.03) benign(0.016) TCGA-CJ-4634-01 19 3293438 3293438 C A CELF5 Silent p.P484P 0.17 TCGA-CJ-4634-01 19 37853658 37853658 A G HKR1 Missense_Mutation p.R321G 0.27 deleterious(0) benign(0.226) TCGA-CJ-4634-01 19 52327023 52327023 C T FPR3 Missense_Mutation p.P8S 0.31 tolerated(0.13) benign(0.08) TCGA-CJ-4634-01 19 58695360 58695360 T A ZNF274 Missense_Mutation p.S10T 0.40 tolerated(0.51) benign(0.022) TCGA-CJ-4634-01 1 112042773 112042773 G A ADORA3 Intron 0.31 TCGA-CJ-4634-01 1 152277657 152277657 A G FLG Silent p.A3235A 0.29 TCGA-CJ-4634-01 1 156105094 156105094 C G LMNA Silent p.L309L 0.32 TCGA-CJ-4634-01 1 157739752 157739752 C T FCRL2 Missense_Mutation p.V167M 0.09 tolerated(1) benign(0.027) TCGA-CJ-4634-01 1 218609363 218609363 C T TGFB2 Missense_Mutation p.S297F 0.30 deleterious(0.05) possibly_damaging(0.739) TCGA-CJ-4634-01 1 228528242 228528242 C T OBSCN Silent p.P6774P 0.43 TCGA-CJ-4634-01 1 47717395 47717395 A T STIL Missense_Mutation p.F1094I 0.34 tolerated(0.21) benign(0.098) TCGA-CJ-4634-01 20 2616597 2616597 G T TMC2 Missense_Mutation p.V778F 0.13 deleterious(0) possibly_damaging(0.824) TCGA-CJ-4634-01 20 3679976 3679976 G A SIGLEC1 Silent p.H553H 0.13 TCGA-CJ-4634-01 21 38390298 38390298 G A RIPPLY3 Missense_Mutation p.E122K 0.24 deleterious(0.02) possibly_damaging(0.81) TCGA-CJ-4634-01 21 45177966 45177966 A - PDXK 3'UTR 0.34 TCGA-CJ-4634-01 22 20718476 20718477 - A USP41 Frame_Shift_Ins p.L341Ffs*15 0.35 TCGA-CJ-4634-01 22 32506242 32506242 C T SLC5A1 3'UTR 0.34 TCGA-CJ-4634-01 2 141806678 141806678 C T LRP1B Missense_Mutation p.V556I 0.10 benign(0.097) TCGA-CJ-4634-01 2 190640204 190640204 A G ORMDL1 Intron 0.15 TCGA-CJ-4634-01 2 201761932 201761932 C A NIF3L1 Missense_Mutation p.T287N 0.32 deleterious(0.01) possibly_damaging(0.783) TCGA-CJ-4634-01 2 219423354 219423354 C A USP37 Missense_Mutation p.G8V 0.27 deleterious(0) probably_damaging(0.999) TCGA-CJ-4634-01 2 230670506 230670506 C A TRIP12 Missense_Mutation p.D789Y 0.05 deleterious(0) benign(0.372) TCGA-CJ-4634-01 2 29295855 29295855 G A C2orf71 Nonsense_Mutation p.R425* 0.32 TCGA-CJ-4634-01 2 55591117 55591117 G C CCDC88A Missense_Mutation p.T152R 0.04 deleterious(0) probably_damaging(0.915) TCGA-CJ-4634-01 2 65488448 65488448 C T ACTR2 Missense_Mutation p.P273L 0.28 deleterious(0) probably_damaging(1) TCGA-CJ-4634-01 2 68401898 68401898 T G PNO1 Missense_Mutation p.I241M 0.32 tolerated(0.16) benign(0.024) TCGA-CJ-4634-01 2 71896302 71896302 C A DYSF Silent p.L1869L 0.37 TCGA-CJ-4634-01 2 73868466 73868467 - T NAT8 Frame_Shift_Ins p.I97Nfs*8 0.26 TCGA-CJ-4634-01 3 10188296 10188297 - TTTT VHL Frame_Shift_Ins p.A149Ffs*26 0.40 TCGA-CJ-4634-01 3 153909099 153909099 G A ARHGEF26 Silent p.K554K 0.05 TCGA-CJ-4634-01 3 183490251 183490251 G C YEATS2 Silent p.V702V 0.32 TCGA-CJ-4634-01 3 48682639 48682639 C G CELSR3 Missense_Mutation p.V2601L 0.36 tolerated(1) benign(0.003) TCGA-CJ-4634-01 3 52651513 52651513 T A PBRM1 Missense_Mutation p.N528I 0.52 tolerated(0.3) probably_damaging(0.993) TCGA-CJ-4634-01 3 52858241 52858241 A T ITIH4 Missense_Mutation p.L379H 0.50 deleterious(0) probably_damaging(0.992) TCGA-CJ-4634-01 3 65415803 65415805 ACA - MAGI1 In_Frame_Del p.V520del 0.49 TCGA-CJ-4634-01 3 9486834 9486834 A C SETD5 Silent p.P430P 0.56 TCGA-CJ-4634-01 4 118005673 118005673 C A TRAM1L1 Missense_Mutation p.V293L 0.14 tolerated(0.11) benign(0.411) TCGA-CJ-4634-01 4 146824030 146824030 C T ZNF827 Silent p.L127L 0.27 TCGA-CJ-4634-01 4 1719303 1719303 G C TMEM129 Missense_Mutation p.F260L 0.45 deleterious(0) probably_damaging(0.995) TCGA-CJ-4634-01 4 36345346 36345346 G A DTHD1 Missense_Mutation p.R749H 0.48 tolerated(0.11) benign(0.022) TCGA-CJ-4634-01 4 78085544 78085544 C T CCNG2 Missense_Mutation p.R275C 0.34 deleterious(0.04) possibly_damaging(0.77) TCGA-CJ-4634-01 5 128321007 128321007 C T SLC27A6 Silent p.Y221Y 0.34 TCGA-CJ-4634-01 5 138713670 138713670 T G SLC23A1 Missense_Mutation p.N487H 0.26 tolerated(0.34) benign(0.005) TCGA-CJ-4634-01 5 140531176 140531176 C T PCDHB6 Silent p.V446V 0.39 TCGA-CJ-4634-01 5 146257812 146257812 G A PPP2R2B Intron 0.46 TCGA-CJ-4634-01 5 154395061 154395061 A - KIF4B Frame_Shift_Del p.N548Tfs*14 0.23 TCGA-CJ-4634-01 5 75886273 75886273 A G IQGAP2 Silent p.K227K 0.33 TCGA-CJ-4634-01 5 86695281 86695281 C A CCNH Nonsense_Mutation p.E268* 0.31 TCGA-CJ-4634-01 6 11104942 11104942 C T ERVFRD-1 Missense_Mutation p.S201N 0.34 tolerated(0.32) benign(0.255) TCGA-CJ-4634-01 6 160176079 160176079 C A WTAP Silent p.I209I 0.53 TCGA-CJ-4634-01 6 28269985 28269985 C T PGBD1 Missense_Mutation p.A785V 0.32 tolerated(0.08) benign(0.115) TCGA-CJ-4634-01 6 3081329 3081329 T C RIPK1 Silent p.V146V 0.30 TCGA-CJ-4634-01 6 43267765 43267765 C T SLC22A7 Missense_Mutation p.A263V 0.37 tolerated(0.14) possibly_damaging(0.7) TCGA-CJ-4634-01 6 53787556 53787556 A C LRRC1 Missense_Mutation p.N514H 0.37 tolerated(0.15) possibly_damaging(0.867) TCGA-CJ-4634-01 7 107600971 107600978 TTCTGCTG - LAMB1 Frame_Shift_Del p.N742Kfs*17 0.20 TCGA-CJ-4634-01 7 141357344 141357344 C G KIAA1147 3'UTR 0.28 TCGA-CJ-4634-01 7 148952668 148952668 A G ZNF212 3'UTR 0.39 TCGA-CJ-4634-01 7 150068781 150068781 G A REPIN1 Missense_Mutation p.E208K 0.31 tolerated(0.17) possibly_damaging(0.487) TCGA-CJ-4634-01 7 23547080 23547080 C T TRA2A Silent p.A200A 0.34 TCGA-CJ-4634-01 7 44561397 44561397 T G NPC1L1 Missense_Mutation p.D956A 0.37 deleterious(0) probably_damaging(0.996) TCGA-CJ-4634-01 7 99764823 99764823 G A GAL3ST4 5'UTR 0.20 TCGA-CJ-4634-01 8 30702516 30702516 C T TEX15 Missense_Mutation p.A1340T 0.33 tolerated(1) benign(0.002) TCGA-CJ-4634-01 8 56015738 56015738 C T XKR4 Silent p.G230G 0.14 TCGA-CJ-4634-01 9 101817583 101817583 G A COL15A1 Missense_Mutation p.E1041K 0.30 deleterious(0) benign(0.025) TCGA-CJ-4634-01 9 134072982 134072982 C G NUP214 Silent p.G1367G 0.36 TCGA-CJ-4634-01 9 138414015 138414016 CA - LCN1 Frame_Shift_Del p.T72Hfs*18 0.19 TCGA-CJ-4634-01 9 138713412 138713412 C T CAMSAP1 Missense_Mutation p.S1032N 0.23 tolerated(0.21) benign(0.253) TCGA-CJ-4634-01 9 73028059 73028059 C A KLF9 Missense_Mutation p.R74L 0.37 tolerated(0.38) benign(0.4) TCGA-CJ-4634-01 X 105132300 105132300 A C NRK Missense_Mutation p.D89A 0.33 deleterious(0) possibly_damaging(0.884) TCGA-CJ-4634-01 X 147088242 147088242 C T FMR1NB Nonsense_Mutation p.Q140* 0.33 TCGA-CJ-4636-01 10 54527937 54527937 C T MBL2 Missense_Mutation p.C236Y 0.17 deleterious(0.02) probably_damaging(0.989) TCGA-CJ-4636-01 10 55581871 55581871 T C PCDH15 Missense_Mutation p.K1874R 0.08 tolerated_low_confidence(0.35) unknown(0) TCGA-CJ-4636-01 11 123777914 123777914 A T OR8D4 Missense_Mutation p.Y259F 0.08 deleterious(0) probably_damaging(0.949) TCGA-CJ-4636-01 11 62190622 62190622 C A SCGB1A1 3'UTR 0.26 TCGA-CJ-4636-01 12 108941708 108941708 C - SART3 Frame_Shift_Del p.E167Sfs*11 0.20 TCGA-CJ-4636-01 12 123307924 123307924 C A CCDC62 Silent p.V671V 0.15 TCGA-CJ-4636-01 12 21679901 21679901 G T C12orf39 Splice_Site p.X29_splice 0.43 TCGA-CJ-4636-01 12 22069967 22069967 G T ABCC9 Silent p.G159G 0.05 TCGA-CJ-4636-01 12 54971106 54971106 G A PDE1B Silent p.L535L 0.35 TCGA-CJ-4636-01 12 70003903 70003903 C T LRRC10 Missense_Mutation p.R239K 0.19 tolerated(0.09) benign(0.024) TCGA-CJ-4636-01 12 95926780 95926780 C G USP44 Missense_Mutation p.G418A 0.04 deleterious(0.01) probably_damaging(0.939) TCGA-CJ-4636-01 13 25034117 25034117 T - PARP4 Frame_Shift_Del p.N764Tfs*6 0.28 TCGA-CJ-4636-01 14 21699200 21699200 G T HNRNPC Missense_Mutation p.N91K 0.24 tolerated(0.06) benign(0.15) TCGA-CJ-4636-01 14 21966492 21966492 C T METTL3 Silent p.L551L 0.14 TCGA-CJ-4636-01 14 21967449 21967449 C G METTL3 Splice_Site p.X506_splice 0.16 TCGA-CJ-4636-01 14 21967512 21967512 C T METTL3 Missense_Mutation p.G486S 0.13 deleterious(0) probably_damaging(0.999) TCGA-CJ-4636-01 14 21967647 21967647 C T METTL3 Missense_Mutation p.E481K 0.13 deleterious(0) probably_damaging(1) TCGA-CJ-4636-01 15 40564552 40564552 C T PAK6 Missense_Mutation p.P329L 0.39 deleterious(0) possibly_damaging(0.859) TCGA-CJ-4636-01 15 41769654 41769654 A T RTF1 Splice_Site p.X561_splice 0.07 TCGA-CJ-4636-01 15 79058016 79058016 C T ADAMTS7 Missense_Mutation p.A1413T 0.29 tolerated(0.06) probably_damaging(0.998) TCGA-CJ-4636-01 15 90172749 90172749 T C KIF7 Missense_Mutation p.E1125G 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-CJ-4636-01 16 2503516 2503516 C T CCNF Missense_Mutation p.P565S 0.28 tolerated(0.05) possibly_damaging(0.511) TCGA-CJ-4636-01 16 30724950 30724950 A T SRCAP Missense_Mutation p.K804M 0.04 unknown(0) TCGA-CJ-4636-01 16 4043480 4043480 G T ADCY9 Missense_Mutation p.P639H 0.47 deleterious(0.01) possibly_damaging(0.764) TCGA-CJ-4636-01 16 4043482 4043482 A T ADCY9 Silent p.A638A 0.48 TCGA-CJ-4636-01 16 66887326 66887326 G T CA7 Missense_Mutation p.R240S 0.18 tolerated(0.29) benign(0.165) TCGA-CJ-4636-01 16 71789925 71789925 T C AP1G1 Missense_Mutation p.E412G 0.22 deleterious(0.02) benign(0.209) TCGA-CJ-4636-01 16 88502933 88502933 G A ZNF469 Missense_Mutation p.E2991K 0.27 probably_damaging(0.965) TCGA-CJ-4636-01 17 26820678 26820678 G T SLC13A2 Missense_Mutation p.G372V 0.37 deleterious(0) probably_damaging(1) TCGA-CJ-4636-01 17 30310080 30310080 T - SUZ12 Frame_Shift_Del p.I327Kfs*80 0.30 TCGA-CJ-4636-01 17 40343099 40343099 A G GHDC Missense_Mutation p.L340S 0.09 deleterious(0) probably_damaging(1) TCGA-CJ-4636-01 17 71241410 71241410 T A C17orf80 Intron 0.06 TCGA-CJ-4636-01 17 76134202 76134202 T A TMC8 Missense_Mutation p.L489H 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-CJ-4636-01 17 78935234 78935234 A C RPTOR Missense_Mutation p.K1216Q 0.24 tolerated(0.24) possibly_damaging(0.563) TCGA-CJ-4636-01 17 9538843 9538843 C A WDR16 Missense_Mutation p.T481N 0.06 tolerated(0.32) benign(0.015) TCGA-CJ-4636-01 18 40853880 40853880 C T SYT4 Missense_Mutation p.V172I 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-CJ-4636-01 18 55992365 55992365 G A NEDD4L Silent p.R217R 0.08 TCGA-CJ-4636-01 19 38951182 38951182 G A RYR1 Missense_Mutation p.R843H 0.12 benign(0.056) TCGA-CJ-4636-01 19 51561893 51561893 G C KLK13 Missense_Mutation p.L183V 0.04 tolerated(0.44) possibly_damaging(0.86) TCGA-CJ-4636-01 19 57839069 57839069 C T ZNF543 Intron 0.24 TCGA-CJ-4636-01 1 111741341 111741341 C A DENND2D Missense_Mutation p.Q89H 0.38 tolerated(0.06) probably_damaging(0.987) TCGA-CJ-4636-01 1 111989749 111989749 A C WDR77 Missense_Mutation p.L154R 0.29 deleterious(0) probably_damaging(0.999) TCGA-CJ-4636-01 1 114633635 114633635 T C SYT6 3'UTR 0.12 TCGA-CJ-4636-01 1 155187761 155187761 C A MTX1 3'Flank 0.08 TCGA-CJ-4636-01 1 170003574 170003574 A - KIFAP3 Frame_Shift_Del p.I227Mfs*5 0.24 TCGA-CJ-4636-01 1 196927203 196927208 GGTAAG - CFHR2 Splice_Site p.X205_splice 0.17 TCGA-CJ-4636-01 1 207014376 207014376 C T IL19 Nonsense_Mutation p.Q169* 0.34 TCGA-CJ-4636-01 1 230910375 230910375 C A CAPN9 Missense_Mutation p.F317L 0.27 deleterious(0) probably_damaging(0.999) TCGA-CJ-4636-01 1 26513674 26513674 G A CNKSR1 Missense_Mutation p.G442S 0.29 deleterious(0.01) probably_damaging(0.938) TCGA-CJ-4636-01 1 38327856 38327856 A T INPP5B 3'UTR 0.27 TCGA-CJ-4636-01 1 75681492 75681492 A G SLC44A5 Missense_Mutation p.F559L 0.08 tolerated(0.28) benign(0.381) TCGA-CJ-4636-01 1 9101624 9101624 A G SLC2A5 Intron 0.08 TCGA-CJ-4636-01 20 10393658 10393658 T C MKKS Missense_Mutation p.K169E 0.29 tolerated(0.4) benign(0.008) TCGA-CJ-4636-01 2 175213496 175213496 G A CIR1 Missense_Mutation p.T361I 0.08 deleterious_low_confidence(0.05) benign(0.059) TCGA-CJ-4636-01 2 227871978 227871978 T C COL4A4 3'UTR 0.28 TCGA-CJ-4636-01 2 25754451 25754451 T A DTNB Nonsense_Mutation p.K298* 0.23 TCGA-CJ-4636-01 3 10191513 10191513 T C VHL Missense_Mutation p.L169P 0.43 deleterious(0) probably_damaging(0.994) TCGA-CJ-4636-01 3 186953403 186953403 T C MASP1 3'UTR 0.20 TCGA-CJ-4636-01 3 52443568 52443568 A G BAP1 Splice_Site p.X41_splice 0.35 TCGA-CJ-4636-01 4 140640547 140640547 T C MAML3 Missense_Mutation p.D1116G 0.38 probably_damaging(0.999) TCGA-CJ-4636-01 4 26432685 26432685 A C RBPJ 3'UTR 0.28 TCGA-CJ-4636-01 4 49019269 49019269 T C CWH43 Missense_Mutation p.L397P 0.20 deleterious(0.02) possibly_damaging(0.49) TCGA-CJ-4636-01 4 73013282 73013282 A T NPFFR2 Missense_Mutation p.N441I 0.35 deleterious(0) probably_damaging(0.996) TCGA-CJ-4636-01 5 178416292 178416292 G C GRM6 Nonsense_Mutation p.S376* 0.43 TCGA-CJ-4636-01 5 66462005 66462005 A T MAST4 Missense_Mutation p.H2333L 0.18 benign(0.008) TCGA-CJ-4636-01 5 70808132 70808132 A G BDP1 Missense_Mutation p.K1375R 0.18 deleterious(0.04) benign(0.439) TCGA-CJ-4636-01 6 10874533 10874533 G A GCM2 Nonsense_Mutation p.R406* 0.06 TCGA-CJ-4636-01 6 129371200 129371200 C T LAMA2 Nonsense_Mutation p.R84* 0.05 TCGA-CJ-4636-01 6 33657132 33657132 G A ITPR3 Missense_Mutation p.R2271H 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-CJ-4636-01 6 56035909 56035909 G A COL21A1 Nonsense_Mutation p.R220* 0.29 TCGA-CJ-4636-01 7 102665656 102665656 A G FBXL13 Silent p.L117L 0.11 TCGA-CJ-4636-01 7 157178323 157178323 C T DNAJB6 Intron 0.07 TCGA-CJ-4636-01 7 4899654 4899654 G A PAPOLB Silent p.H595H 0.20 TCGA-CJ-4636-01 8 106815071 106815071 A C ZFPM2 Missense_Mutation p.N921H 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.526) TCGA-CJ-4636-01 8 110497338 110497338 C A PKHD1L1 Silent p.I3214I 0.10 TCGA-CJ-4636-01 8 134478309 134478309 T C ST3GAL1 Missense_Mutation p.N111D 0.19 benign(0.034) TCGA-CJ-4636-01 9 95165563 95165563 A C OGN Missense_Mutation p.F43V 0.28 tolerated(0.21) benign(0.004) TCGA-CJ-4636-01 X 114468300 114468300 T C LRCH2 Missense_Mutation p.D102G 0.09 deleterious(0) benign(0.383) TCGA-CJ-4636-01 X 118219357 118219357 G T KIAA1210 Missense_Mutation p.P1613T 0.53 tolerated(0.06) benign(0.058) TCGA-CJ-4637-01 10 55700700 55700700 G A PCDH15 Missense_Mutation p.T1053I 0.12 deleterious(0) probably_damaging(0.995) TCGA-CJ-4637-01 10 75893904 75893904 T A AP3M1 Missense_Mutation p.D155V 0.07 deleterious(0.02) benign(0.04) TCGA-CJ-4637-01 10 87628903 87628903 T G GRID1 Missense_Mutation p.H272P 0.17 tolerated(0.29) benign(0.378) TCGA-CJ-4637-01 11 121457019 121457020 CT - SORL1 Frame_Shift_Del p.S1266Rfs*2 0.11 TCGA-CJ-4637-01 11 122756652 122756652 A C C11orf63 Missense_Mutation p.K32T 0.07 deleterious(0.01) possibly_damaging(0.795) TCGA-CJ-4637-01 11 64503123 64503123 G A RASGRP2 Missense_Mutation p.T396M 0.20 tolerated(0.22) possibly_damaging(0.818) TCGA-CJ-4637-01 12 49448520 49448520 C T KMT2D Missense_Mutation p.R64Q 0.09 unknown(0) TCGA-CJ-4637-01 12 57871324 57871324 G T ARHGAP9 Missense_Mutation p.P225H 0.09 deleterious(0.02) benign(0.014) TCGA-CJ-4637-01 12 6495606 6495606 G T LTBR Missense_Mutation p.M221I 0.12 tolerated(0.36) benign(0.003) TCGA-CJ-4637-01 14 20825951 20825951 T C PARP2 Missense_Mutation p.W583R 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CJ-4637-01 14 22772309 22772309 C T TRAV39 Silent p.L68L 0.09 TCGA-CJ-4637-01 14 52465264 52465264 A G C14orf166 Silent p.A113A 0.09 TCGA-CJ-4637-01 15 50535193 50535193 C A HDC Missense_Mutation p.C418F 0.13 tolerated(0.25) benign(0.067) TCGA-CJ-4637-01 16 12897657 12897657 C A CPPED1 5'UTR 0.14 TCGA-CJ-4637-01 16 66511499 66511499 G T BEAN1 Missense_Mutation p.R109M 0.16 deleterious(0) probably_damaging(0.994) TCGA-CJ-4637-01 17 36654725 36654725 A G ARHGAP23 Missense_Mutation p.T1130A 0.11 deleterious(0.01) possibly_damaging(0.798) TCGA-CJ-4637-01 17 40705762 40705762 G T HSD17B1 Intron 0.18 TCGA-CJ-4637-01 17 45452174 45452174 C G EFCAB13 Missense_Mutation p.S405C 0.10 deleterious(0.01) probably_damaging(0.984) TCGA-CJ-4637-01 17 4851656 4851656 T C PFN1 Missense_Mutation p.M12V 0.09 tolerated(0.09) benign(0.002) TCGA-CJ-4637-01 17 7384817 7384817 G C SLC35G6 5'UTR 0.15 TCGA-CJ-4637-01 18 48190803 48190803 A G MAPK4 Missense_Mutation p.T159A 0.10 tolerated(0.18) probably_damaging(0.982) TCGA-CJ-4637-01 18 67365783 67365783 A G DOK6 Missense_Mutation p.R185G 0.11 deleterious(0) probably_damaging(0.998) TCGA-CJ-4637-01 19 20045249 20045249 C T ZNF93 Silent p.S495S 0.09 TCGA-CJ-4637-01 19 36297677 36297677 T C PRODH2 Missense_Mutation p.N321S 0.12 deleterious(0.02) probably_damaging(0.993) TCGA-CJ-4637-01 19 4202045 4202045 C T ANKRD24 Silent p.A122A 0.07 TCGA-CJ-4637-01 19 5240273 5240273 G A PTPRS Silent p.P547P 0.10 TCGA-CJ-4637-01 19 54573304 54573304 T C TARM1 Missense_Mutation p.S257G 0.16 tolerated(0.09) benign(0.21) TCGA-CJ-4637-01 19 9069489 9069489 G T MUC16 Missense_Mutation p.A5986E 0.05 unknown(0) TCGA-CJ-4637-01 1 151138557 151138557 C T SCNM1 5'UTR 0.10 TCGA-CJ-4637-01 1 151681728 151681728 G A CELF3 Missense_Mutation p.T125I 0.11 deleterious(0) possibly_damaging(0.793) TCGA-CJ-4637-01 1 161123716 161123716 T - UFC1 5'UTR 0.28 TCGA-CJ-4637-01 1 171759689 171759689 G T METTL13 Silent p.L469L 0.06 TCGA-CJ-4637-01 1 32266115 32266115 A T SPOCD1 Missense_Mutation p.V510D 0.18 deleterious(0) possibly_damaging(0.601) TCGA-CJ-4637-01 1 36636629 36636629 C T MAP7D1 Missense_Mutation p.P35L 0.09 probably_damaging(0.991) TCGA-CJ-4637-01 1 44386570 44386570 T A ST3GAL3 Nonsense_Mutation p.Y405* 0.16 TCGA-CJ-4637-01 20 16030706 16030706 A - MACROD2 3'UTR 0.36 TCGA-CJ-4637-01 21 28306977 28306977 C T ADAMTS5 Silent p.L499L 0.05 TCGA-CJ-4637-01 22 44328951 44328952 - C PNPLA3 Frame_Shift_Ins p.D230Gfs*43 0.08 TCGA-CJ-4637-01 2 113532612 113532612 A C IL1A 3'UTR 0.09 TCGA-CJ-4637-01 2 148695897 148695897 C G ORC4 Missense_Mutation p.E342Q 0.13 tolerated(0.14) benign(0.209) TCGA-CJ-4637-01 2 202025662 202025662 A G CFLAR Missense_Mutation p.E434G 0.10 tolerated(0.2) benign(0.03) TCGA-CJ-4637-01 2 218999551 218999551 C T CXCR2 Silent p.D9D 0.07 TCGA-CJ-4637-01 2 228497787 228497787 G A C2orf83 Silent p.A5A 0.16 TCGA-CJ-4637-01 2 235404600 235404600 C T ARL4C 3'UTR 0.12 TCGA-CJ-4637-01 2 56145197 56145198 - A EFEMP1 Intron 0.14 TCGA-CJ-4637-01 3 10188204 10188204 T - VHL Frame_Shift_Del p.W117Gfs*42 0.23 TCGA-CJ-4637-01 3 113127995 113127995 T G WDR52 Missense_Mutation p.D283A 0.16 deleterious(0.03) benign(0.04) TCGA-CJ-4637-01 3 123049743 123049743 C T ADCY5 Missense_Mutation p.A547T 0.07 deleterious(0.04) possibly_damaging(0.898) TCGA-CJ-4637-01 3 183976136 183976136 T G ECE2 Intron 0.11 TCGA-CJ-4637-01 3 52442512 52442512 T C BAP1 Missense_Mutation p.N78S 0.14 tolerated(0.06) probably_damaging(0.975) TCGA-CJ-4637-01 4 108641361 108641361 G A PAPSS1 5'UTR 0.18 TCGA-CJ-4637-01 4 2214836 2214836 T A POLN Nonsense_Mutation p.K51* 0.04 TCGA-CJ-4637-01 5 178050273 178050273 A G CLK4 Missense_Mutation p.F49L 0.28 tolerated(0.72) benign(0.001) TCGA-CJ-4637-01 5 33561238 33561238 C T ADAMTS12 Missense_Mutation p.C1340Y 0.08 deleterious(0) probably_damaging(1) TCGA-CJ-4637-01 5 52145320 52145320 G T ITGA1 Splice_Site p.X61_splice 0.07 TCGA-CJ-4637-01 5 73931537 73931537 C G ENC1 Missense_Mutation p.K258N 0.17 tolerated(1) benign(0.004) TCGA-CJ-4637-01 6 170179296 170179296 T A ERMARD Silent p.P586P 0.10 TCGA-CJ-4637-01 6 70951673 70951673 A T COL9A1 Silent p.G664G 0.07 TCGA-CJ-4637-01 7 23750185 23750185 C A STK31 Intron 0.30 TCGA-CJ-4637-01 9 131857624 131857624 C T CRAT 3'UTR 0.15 TCGA-CJ-4637-01 9 13219576 13219576 A G MPDZ Silent p.T356T 0.09 TCGA-CJ-4637-01 9 140062329 140062329 G A GRIN1 3'UTR 0.09 TCGA-CJ-4637-01 9 35068351 35068351 C A VCP Missense_Mutation p.G9V 0.13 tolerated(0.11) benign(0.028) TCGA-CJ-4637-01 9 73027946 73027946 C A KLF9 Nonsense_Mutation p.E112* 0.16 TCGA-CJ-4637-01 9 79469063 79469063 T C PRUNE2 Missense_Mutation p.D33G 0.13 deleterious(0) probably_damaging(0.999) TCGA-CJ-4637-01 X 47498682 47498682 G A ELK1 Missense_Mutation p.P89L 0.09 deleterious(0) probably_damaging(0.999) TCGA-CJ-4638-01 10 75520019 75520019 G A SEC24C Missense_Mutation p.S242N 0.33 tolerated(0.3) benign(0.005) TCGA-CJ-4638-01 11 18750997 18750997 G T PTPN5 Intron 0.14 TCGA-CJ-4638-01 11 2434054 2434055 - G TRPM5 Frame_Shift_Ins p.Q762Pfs*50 0.16 TCGA-CJ-4638-01 11 47593082 47593082 C A PTPMT1 Silent p.I169I 0.36 TCGA-CJ-4638-01 11 50003858 50003858 G A OR4C12 Silent p.F60F 0.14 TCGA-CJ-4638-01 11 94170390 94170390 T C MRE11A Missense_Mutation p.T627A 0.07 tolerated_low_confidence(0.49) benign(0.001) TCGA-CJ-4638-01 12 11905414 11905414 A T ETV6 Missense_Mutation p.S22C 0.40 deleterious(0) possibly_damaging(0.671) TCGA-CJ-4638-01 12 2778099 2778099 C T CACNA1C Missense_Mutation p.R1590C 0.21 deleterious(0) probably_damaging(1) TCGA-CJ-4638-01 12 27933951 27933951 T C KLHL42 Missense_Mutation p.F230L 0.25 tolerated(1) benign(0.001) TCGA-CJ-4638-01 12 39980001 39980001 C G ABCD2 Missense_Mutation p.R582P 0.11 tolerated(0.26) benign(0.02) TCGA-CJ-4638-01 12 52771856 52771856 A G KRT84 Missense_Mutation p.F589L 0.08 tolerated_low_confidence(0.2) unknown(0) TCGA-CJ-4638-01 12 5672713 5672713 C T ANO2 Missense_Mutation p.V917I 0.22 tolerated(0.42) benign(0.036) TCGA-CJ-4638-01 13 33634984 33634984 G A KL Missense_Mutation p.V590I 0.30 tolerated(0.12) benign(0.08) TCGA-CJ-4638-01 14 23058134 23058134 G A DAD1 5'UTR 0.56 TCGA-CJ-4638-01 14 31613394 31613394 T G HECTD1 Missense_Mutation p.K901Q 0.62 tolerated(0.33) possibly_damaging(0.451) TCGA-CJ-4638-01 14 58949396 58949396 C T KIAA0586 Missense_Mutation p.S1090F 0.16 deleterious(0.01) possibly_damaging(0.904) TCGA-CJ-4638-01 14 75279329 75279329 A G YLPM1 Splice_Site p.X1783_splice 0.59 TCGA-CJ-4638-01 14 75515057 75515058 - T MLH3 Frame_Shift_Ins p.N434Kfs*4 0.09 TCGA-CJ-4638-01 14 93650048 93650050 TTC - MOAP1 In_Frame_Del p.E180del 0.46 TCGA-CJ-4638-01 15 42529668 42529668 T A TMEM87A Missense_Mutation p.Y277F 0.08 deleterious(0.03) probably_damaging(1) TCGA-CJ-4638-01 16 50664121 50664121 A G NKD1 Missense_Mutation p.I163V 0.29 deleterious(0) probably_damaging(0.99) TCGA-CJ-4638-01 16 58571103 58571106 TACT - CNOT1 Frame_Shift_Del p.V1812Cfs*8 0.32 TCGA-CJ-4638-01 17 33690266 33690266 C T SLFN11 Silent p.S187S 0.36 TCGA-CJ-4638-01 17 46620386 46620386 G T HOXB2 3'UTR 0.46 TCGA-CJ-4638-01 17 58786584 58786584 A T BCAS3 Silent p.T73T 0.37 TCGA-CJ-4638-01 17 74720100 74720100 G T JMJD6 Missense_Mutation p.H187N 0.30 deleterious(0) probably_damaging(1) TCGA-CJ-4638-01 17 8047092 8047092 T C PER1 Missense_Mutation p.Y855C 0.20 tolerated(0.18) benign(0.002) TCGA-CJ-4638-01 18 23714010 23714010 G A PSMA8 Silent p.A27A 0.12 TCGA-CJ-4638-01 18 29867878 29867878 G C GAREM Missense_Mutation p.Q228E 0.36 tolerated(0.07) probably_damaging(0.965) TCGA-CJ-4638-01 18 45374902 45374902 C G SMAD2 Missense_Mutation p.G314A 0.06 deleterious(0.01) probably_damaging(0.992) TCGA-CJ-4638-01 18 8825443 8825443 A G SOGA2 Missense_Mutation p.N1312S 0.11 tolerated(0.51) possibly_damaging(0.557) TCGA-CJ-4638-01 19 12186656 12186656 C A ZNF844 Missense_Mutation p.Q241K 0.38 tolerated(0.12) possibly_damaging(0.621) TCGA-CJ-4638-01 19 15904911 15904911 C G OR10H5 Missense_Mutation p.S18C 0.33 deleterious(0) probably_damaging(0.98) TCGA-CJ-4638-01 19 46506269 46506269 C A CCDC61 5'UTR 0.07 TCGA-CJ-4638-01 19 53209500 53209500 G A ZNF611 Missense_Mutation p.H270Y 0.37 tolerated(0.07) benign(0.004) TCGA-CJ-4638-01 19 55401272 55401272 C A FCAR 3'UTR 0.31 TCGA-CJ-4638-01 19 57330017 57330017 G T PEG3 Missense_Mutation p.H241Q 0.31 tolerated(1) benign(0) TCGA-CJ-4638-01 19 6467951 6467951 G C DENND1C Missense_Mutation p.S657C 0.33 tolerated_low_confidence(0.07) benign(0.299) TCGA-CJ-4638-01 1 180165532 180165532 T G QSOX1 Missense_Mutation p.F535C 0.18 deleterious(0) probably_damaging(0.989) TCGA-CJ-4638-01 1 181767850 181767850 T A CACNA1E Missense_Mutation p.H2274Q 0.36 tolerated(0.33) possibly_damaging(0.599) TCGA-CJ-4638-01 1 40704122 40704122 G A RLF Missense_Mutation p.E1250K 0.38 tolerated(0.33) benign(0.029) TCGA-CJ-4638-01 1 45796978 45796978 A G MUTYH Missense_Mutation p.L448P 0.37 tolerated(0.05) possibly_damaging(0.879) TCGA-CJ-4638-01 1 86957042 86957042 G A CLCA1 Silent p.Q484Q 0.36 TCGA-CJ-4638-01 20 21309253 21309253 A C XRN2 Missense_Mutation p.E124D 0.06 deleterious(0.05) probably_damaging(0.971) TCGA-CJ-4638-01 20 47309286 47309286 G C PREX1 Missense_Mutation p.I320M 0.25 tolerated(0.07) benign(0.21) TCGA-CJ-4638-01 20 47731337 47731337 A T STAU1 3'UTR 0.32 TCGA-CJ-4638-01 20 55803435 55803435 C A BMP7 Missense_Mutation p.R154L 0.40 deleterious(0) possibly_damaging(0.495) TCGA-CJ-4638-01 21 28337771 28337771 C A ADAMTS5 Missense_Mutation p.A314S 0.07 tolerated(0.2) benign(0.039) TCGA-CJ-4638-01 21 47692488 47692488 C T MCM3AP Missense_Mutation p.G818R 0.10 deleterious(0) probably_damaging(1) TCGA-CJ-4638-01 22 17978494 17978494 G T CECR2 Missense_Mutation p.G112V 0.25 deleterious(0) probably_damaging(0.943) TCGA-CJ-4638-01 22 21385373 21385373 G C SLC7A4 Silent p.S243S 0.35 TCGA-CJ-4638-01 22 30050715 30050715 G C NF2 Splice_Site p.X172_splice 0.07 TCGA-CJ-4638-01 22 31674430 31674430 C G LIMK2 3'Flank 0.09 TCGA-CJ-4638-01 2 103431419 103431419 C T TMEM182 Missense_Mutation p.H228Y 0.05 deleterious(0) benign(0) TCGA-CJ-4638-01 2 113976092 113976092 C T PAX8 3'UTR 0.13 TCGA-CJ-4638-01 2 162894910 162894910 A C DPP4 Missense_Mutation p.I172S 0.29 deleterious(0) probably_damaging(0.964) TCGA-CJ-4638-01 2 17876536 17876536 C A SMC6 Missense_Mutation p.C854F 0.03 tolerated(0.09) benign(0.33) TCGA-CJ-4638-01 2 179596909 179596909 T G TTN Missense_Mutation p.E5596A 0.06 TCGA-CJ-4638-01 2 21242762 21242762 C A APOB Missense_Mutation p.L944F 0.35 probably_damaging(0.999) TCGA-CJ-4638-01 2 75107668 75107668 C T HK2 Silent p.T514T 0.10 TCGA-CJ-4638-01 3 10188218 10188218 G T VHL Missense_Mutation p.D121Y 0.55 deleterious(0) probably_damaging(0.999) TCGA-CJ-4638-01 3 121825286 121825286 G C CD86 Missense_Mutation p.M214I 0.37 tolerated(0.2) benign(0.03) TCGA-CJ-4638-01 3 196539709 196539709 A G PAK2 Missense_Mutation p.N308D 0.04 deleterious(0.01) probably_damaging(0.984) TCGA-CJ-4638-01 3 52443574 52443574 G A BAP1 Nonsense_Mutation p.Q40* 0.53 TCGA-CJ-4638-01 3 9517686 9517686 T C SETD5 Missense_Mutation p.Y1414H 0.53 deleterious(0) possibly_damaging(0.497) TCGA-CJ-4638-01 4 114290829 114290829 A T ANK2 Silent p.I3826I 0.11 TCGA-CJ-4638-01 4 178283613 178283613 T A NEIL3 Silent p.I602I 0.42 TCGA-CJ-4638-01 4 186508841 186508841 C T SORBS2 Silent p.G1181G 0.09 TCGA-CJ-4638-01 4 24529461 24529461 C - DHX15 3'UTR 0.26 TCGA-CJ-4638-01 4 73956463 73956463 T A ANKRD17 Silent p.S2294S 0.38 TCGA-CJ-4638-01 5 140389673 140389673 C A PCDHAC1 3'UTR 0.04 TCGA-CJ-4638-01 5 149431465 149431465 T A HMGXB3 Missense_Mutation p.L1197M 0.18 deleterious(0) probably_damaging(0.999) TCGA-CJ-4638-01 5 158603844 158603844 A G RNF145 Silent p.C169C 0.09 TCGA-CJ-4638-01 5 178566983 178566983 G A ADAMTS2 Silent p.D561D 0.06 TCGA-CJ-4638-01 5 180475150 180475150 C T BTNL9 Silent p.I111I 0.11 TCGA-CJ-4638-01 5 89989763 89989763 T A GPR98 Missense_Mutation p.V2397E 0.18 possibly_damaging(0.804) TCGA-CJ-4638-01 5 9122825 9122825 G - SEMA5A Frame_Shift_Del p.P575Rfs*130 0.28 TCGA-CJ-4638-01 6 152647465 152647465 G A SYNE1 Missense_Mutation p.R5087W 0.11 benign(0.28) TCGA-CJ-4638-01 6 31745339 31745339 G A VARS 3'UTR 0.33 TCGA-CJ-4638-01 7 102579923 102579923 T G LRRC17 Silent p.L273L 0.05 TCGA-CJ-4638-01 7 103243784 103243793 GACACCACAC - RELN Frame_Shift_Del p.C1098Sfs*18 0.18 TCGA-CJ-4638-01 7 121766489 121766489 T A AASS Nonsense_Mutation p.K138* 0.35 TCGA-CJ-4638-01 7 142563846 142563846 G T EPHB6 Missense_Mutation p.G412C 0.23 tolerated(0.06) possibly_damaging(0.778) TCGA-CJ-4638-01 7 29963599 29963599 C A SCRN1 Missense_Mutation p.D427Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-CJ-4638-01 8 10782282 10782282 G A XKR6 Missense_Mutation p.R275C 0.33 deleterious(0) probably_damaging(0.994) TCGA-CJ-4638-01 8 121259910 121259910 C T COL14A1 Silent p.R846R 0.11 TCGA-CJ-4638-01 8 99028778 99028778 T C MATN2 Silent p.S528S 0.29 TCGA-CJ-4638-01 9 131371420 131371420 C T SPTAN1 Nonsense_Mutation p.Q1539* 0.12 TCGA-CJ-4638-01 9 138679959 138679959 T A KCNT1 Intron 0.10 TCGA-CJ-4638-01 9 2729659 2729659 G A KCNV2 Missense_Mutation p.A524T 0.55 tolerated(0.06) benign(0.285) TCGA-CJ-4638-01 9 35740973 35740973 C A GBA2 Missense_Mutation p.R292L 0.07 tolerated(0.1) benign(0.039) TCGA-CJ-4638-01 9 35753713 35753713 G A MSMP Silent p.R61R 0.39 TCGA-CJ-4638-01 9 6251225 6251225 C G IL33 Silent p.V101V 0.07 TCGA-CJ-4638-01 9 91961828 91961831 TGCA - SECISBP2 Frame_Shift_Del p.A490Qfs*8 0.11 TCGA-CJ-4638-01 X 107924995 107924995 C T COL4A5 Missense_Mutation p.P1365S 0.25 possibly_damaging(0.905) TCGA-CJ-4638-01 X 111698754 111698754 C T ZCCHC16 Silent p.L266L 0.41 TCGA-CJ-4638-01 X 119744919 119744919 G A MCTS1 Missense_Mutation p.M151I 0.06 deleterious(0.02) benign(0.188) TCGA-CJ-4638-01 X 55514571 55514571 C T USP51 Missense_Mutation p.E268K 0.32 tolerated(0.51) probably_damaging(0.973) TCGA-CJ-4639-01 10 102740600 102740600 C T SEMA4G Missense_Mutation p.P497S 0.28 tolerated(0.37) benign(0.003) TCGA-CJ-4639-01 10 17737083 17737085 TCA - STAM In_Frame_Del p.S191del 0.15 TCGA-CJ-4639-01 10 6257233 6257233 C T PFKFB3 Silent p.S84S 0.38 TCGA-CJ-4639-01 10 97366442 97366442 G C ALDH18A1 3'UTR 0.32 TCGA-CJ-4639-01 11 108106450 108106450 A T ATM Nonsense_Mutation p.K129* 0.11 TCGA-CJ-4639-01 11 108216609 108216609 C G ATM Missense_Mutation p.T2853R 0.14 deleterious(0) probably_damaging(0.997) TCGA-CJ-4639-01 11 117774795 117774795 C G TMPRSS13 Missense_Mutation p.R468P 0.25 deleterious(0.02) possibly_damaging(0.77) TCGA-CJ-4639-01 11 129830865 129830865 C G PRDM10 5'UTR 0.29 TCGA-CJ-4639-01 11 6499971 6499971 A T ARFIP2 Silent p.L178L 0.34 TCGA-CJ-4639-01 11 93432025 93432025 T A KIAA1731 Missense_Mutation p.F1316Y 0.24 tolerated(0.12) benign(0.003) TCGA-CJ-4639-01 12 110318107 110318107 C T GLTP Missense_Mutation p.E25K 0.07 tolerated(0.07) benign(0.056) TCGA-CJ-4639-01 12 132329961 132329961 C T MMP17 Missense_Mutation p.R391C 0.31 deleterious(0) probably_damaging(0.999) TCGA-CJ-4639-01 12 132611059 132611059 G C RP13-977J11.5 RNA 0.18 TCGA-CJ-4639-01 12 48272814 48272814 C G VDR Missense_Mutation p.G78A 0.29 deleterious(0) probably_damaging(0.999) TCGA-CJ-4639-01 15 42744055 42744055 T A ZNF106 Missense_Mutation p.S116C 0.25 deleterious(0.01) possibly_damaging(0.503) TCGA-CJ-4639-01 16 31049919 31049919 G A STX4 Missense_Mutation p.R218H 0.11 deleterious(0) possibly_damaging(0.791) TCGA-CJ-4639-01 16 4033433 4033433 C A ADCY9 Missense_Mutation p.K773N 0.27 tolerated(0.77) benign(0.001) TCGA-CJ-4639-01 16 53487478 53487478 A C RBL2 Missense_Mutation p.K294T 0.22 deleterious(0) probably_damaging(0.992) TCGA-CJ-4639-01 16 58749998 58749998 A C GOT2 Silent p.R313R 0.20 TCGA-CJ-4639-01 17 29196281 29196281 T C ATAD5 Missense_Mutation p.I1110T 0.24 tolerated(0.35) benign(0.002) TCGA-CJ-4639-01 17 44248335 44248335 C G KANSL1 Missense_Mutation p.R392T 0.13 deleterious(0.05) possibly_damaging(0.462) TCGA-CJ-4639-01 17 55184285 55184285 G A AKAP1 Missense_Mutation p.C487Y 0.34 tolerated(0.41) benign(0.013) TCGA-CJ-4639-01 17 62492539 62492539 T A POLG2 Missense_Mutation p.E183V 0.28 deleterious(0.03) benign(0.282) TCGA-CJ-4639-01 17 74076506 74076506 G A ZACN Splice_Site p.X182_splice 0.27 TCGA-CJ-4639-01 17 7797796 7797799 ATTA - CHD3 Frame_Shift_Del p.D439Afs*103 0.09 TCGA-CJ-4639-01 17 8702333 8702333 G A MFSD6L Missense_Mutation p.L36F 0.16 deleterious(0) probably_damaging(1) TCGA-CJ-4639-01 18 77170523 77170523 C T NFATC1 Missense_Mutation p.A70V 0.28 tolerated(0.17) benign(0.003) TCGA-CJ-4639-01 19 36362632 36362632 C A APLP1 Missense_Mutation p.S219Y 0.26 deleterious(0.03) possibly_damaging(0.784) TCGA-CJ-4639-01 19 42736808 42736808 C A GSK3A Missense_Mutation p.E375D 0.24 tolerated(0.17) benign(0.018) TCGA-CJ-4639-01 19 45854226 45854226 T G KLC3 Missense_Mutation p.M465R 0.23 tolerated(0.43) benign(0.025) TCGA-CJ-4639-01 19 56089233 56089233 G T ZNF579 3'UTR 0.62 TCGA-CJ-4639-01 19 56369989 56369989 C A NLRP4 Missense_Mutation p.D410E 0.16 deleterious(0.02) benign(0.105) TCGA-CJ-4639-01 19 58153552 58153552 G A ZNF211 3'UTR 0.21 TCGA-CJ-4639-01 19 9870574 9870574 C G ZNF846 Missense_Mutation p.D92H 0.03 deleterious(0) probably_damaging(0.968) TCGA-CJ-4639-01 1 11594487 11594487 G A PTCHD2 Missense_Mutation p.R1142H 0.32 tolerated(0.09) possibly_damaging(0.742) TCGA-CJ-4639-01 1 11594488 11594488 C T PTCHD2 Silent p.R1142R 0.33 TCGA-CJ-4639-01 1 160783681 160783681 A C LY9 Missense_Mutation p.H237P 0.07 tolerated(0.13) possibly_damaging(0.885) TCGA-CJ-4639-01 1 161967670 161967670 G T OLFML2B Silent p.T473T 0.05 TCGA-CJ-4639-01 1 167365546 167365546 G A POU2F1 Silent p.G337G 0.25 TCGA-CJ-4639-01 1 186282774 186282774 T C TPR 3'UTR 0.10 TCGA-CJ-4639-01 1 192780679 192780679 G T RGS2 Missense_Mutation p.D197Y 0.32 deleterious(0) possibly_damaging(0.684) TCGA-CJ-4639-01 1 19445444 19445444 T G UBR4 Missense_Mutation p.E3488A 0.22 possibly_damaging(0.899) TCGA-CJ-4639-01 1 205696856 205696856 G C NUCKS1 Missense_Mutation p.R49G 0.22 tolerated(0.52) benign(0.022) TCGA-CJ-4639-01 1 206331351 206331351 C T CTSE 3'UTR 0.12 TCGA-CJ-4639-01 1 20644082 20644082 C T VWA5B1 Missense_Mutation p.A208V 0.07 tolerated(0.14) possibly_damaging(0.631) TCGA-CJ-4639-01 1 216019306 216019306 G A USH2A Missense_Mutation p.S2972F 0.26 possibly_damaging(0.905) TCGA-CJ-4639-01 1 237819173 237819173 C T RYR2 Missense_Mutation p.A2673V 0.04 probably_damaging(0.982) TCGA-CJ-4639-01 1 3545158 3545158 A G TPRG1L Missense_Mutation p.I270M 0.31 deleterious(0.02) probably_damaging(0.923) TCGA-CJ-4639-01 20 60574076 60574077 - C TAF4 Frame_Shift_Ins p.D959Gfs*2 0.20 TCGA-CJ-4639-01 22 24226035 24226036 - C SLC2A11 Frame_Shift_Ins p.F362Lfs*46 0.24 TCGA-CJ-4639-01 2 141128833 141128833 C T LRP1B Missense_Mutation p.R3597H 0.09 benign(0) TCGA-CJ-4639-01 2 189856440 189856440 G - COL3A1 Frame_Shift_Del p.A316Lfs*94 0.23 TCGA-CJ-4639-01 2 196750888 196750888 G A DNAH7 Nonsense_Mutation p.R1839* 0.25 TCGA-CJ-4639-01 2 63401948 63401948 G C WDPCP Missense_Mutation p.D645E 0.28 deleterious(0.03) benign(0.025) TCGA-CJ-4639-01 3 127337930 127337930 G T MCM2 Nonsense_Mutation p.E692* 0.18 TCGA-CJ-4639-01 3 140401925 140401925 C T TRIM42 Silent p.H321H 0.29 TCGA-CJ-4639-01 3 161221335 161221335 G C OTOL1 Missense_Mutation p.A347P 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-CJ-4639-01 4 123265686 123265686 A - KIAA1109 Frame_Shift_Del p.M4236Wfs*5 0.22 TCGA-CJ-4639-01 4 145655993 145655993 G A HHIP Missense_Mutation p.G621R 0.31 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-CJ-4639-01 4 159138498 159138499 - A TMEM144 Frame_Shift_Ins p.T88Nfs*15 0.25 TCGA-CJ-4639-01 4 17579091 17579091 G A LAP3 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0.03) benign(0.02) TCGA-CJ-4639-01 4 87662970 87662970 G T PTPN13 Splice_Site p.X829_splice 0.25 TCGA-CJ-4639-01 5 136448175 136448175 C A SPOCK1 Silent p.V141V 0.11 TCGA-CJ-4639-01 5 53815390 53815390 C T SNX18 Silent p.I536I 0.25 TCGA-CJ-4639-01 5 68505612 68505612 G T CENPH Missense_Mutation p.V244F 0.31 deleterious(0.03) benign(0.081) TCGA-CJ-4639-01 5 71489932 71489932 A - MAP1B Frame_Shift_Del p.S251Rfs*5 0.17 TCGA-CJ-4639-01 6 24551659 24551659 T A KIAA0319 Intron 0.34 TCGA-CJ-4639-01 6 25913557 25913557 A C SLC17A2 Nonsense_Mutation p.L426* 0.25 TCGA-CJ-4639-01 6 26392525 26392525 A G BTN2A2 Intron 0.16 TCGA-CJ-4639-01 7 100696341 100696341 G A MUC17 Missense_Mutation p.G4393D 0.10 unknown(0) TCGA-CJ-4639-01 7 142498874 142498874 G T TRBC2 Nonsense_Mutation p.E51* 0.14 TCGA-CJ-4639-01 8 8748320 8748320 T C MFHAS1 Missense_Mutation p.H750R 0.28 tolerated_low_confidence(0.24) benign(0) TCGA-CJ-4639-01 8 94746348 94746348 C A RBM12B Missense_Mutation p.R764M 0.21 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-CJ-4639-01 X 117900881 117900882 - AA IL13RA1 Frame_Shift_Ins p.L319Sfs*17 0.18 TCGA-CJ-4639-01 X 127185839 127185839 C A ACTRT1 Missense_Mutation p.R116M 0.28 tolerated(0.05) probably_damaging(0.951) TCGA-CJ-4639-01 X 129290574 129290574 T G AIFM1 Missense_Mutation p.N37T 0.15 tolerated_low_confidence(0.72) benign(0) TCGA-CJ-4639-01 X 37586901 37586901 C A XK Missense_Mutation p.T174N 0.08 tolerated(0.06) benign(0.148) TCGA-CJ-4639-01 X 9677737 9677737 C A TBL1X Missense_Mutation p.T459N 0.17 deleterious(0.01) possibly_damaging(0.698) TCGA-CJ-4640-01 10 21074611 21074611 C T NEBL 3'UTR 0.23 TCGA-CJ-4640-01 10 75095189 75095189 T C TTC18 Missense_Mutation p.S296G 0.17 tolerated(0.15) possibly_damaging(0.641) TCGA-CJ-4640-01 10 99125881 99125881 T C RRP12 Silent p.E1167E 0.27 TCGA-CJ-4640-01 10 99664546 99664546 C T CRTAC1 Silent p.G292G 0.11 TCGA-CJ-4640-01 11 2992733 2992733 G A NAP1L4 Missense_Mutation p.P116L 0.11 deleterious(0.01) probably_damaging(0.942) TCGA-CJ-4640-01 11 33308209 33308209 T C HIPK3 Silent p.V83V 0.08 TCGA-CJ-4640-01 11 46894661 46894661 C G LRP4 Missense_Mutation p.D1525H 0.14 tolerated(0.09) benign(0.142) TCGA-CJ-4640-01 11 6566997 6566997 G C DNHD1 Missense_Mutation p.G1610R 0.28 probably_damaging(0.994) TCGA-CJ-4640-01 11 66192144 66192144 C T NPAS4 Missense_Mutation p.R595W 0.12 deleterious(0) probably_damaging(0.999) TCGA-CJ-4640-01 12 102151009 102151009 C T GNPTAB Missense_Mutation p.D1139N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CJ-4640-01 12 122967187 122967187 G A ZCCHC8 Missense_Mutation p.P243S 0.33 deleterious(0.02) benign(0.125) TCGA-CJ-4640-01 12 47472594 47472594 C - AMIGO2 Frame_Shift_Del p.N65Tfs*5 0.11 TCGA-CJ-4640-01 12 53467205 53467205 C A SPRYD3 Silent p.V186V 0.08 TCGA-CJ-4640-01 12 6672820 6672820 C A NOP2 Missense_Mutation p.E249D 0.24 tolerated(0.28) benign(0.003) TCGA-CJ-4640-01 13 42042974 42042974 A G RGCC Missense_Mutation p.S136G 0.25 tolerated(0.15) possibly_damaging(0.461) TCGA-CJ-4640-01 14 56757030 56757030 G T PELI2 Silent p.G184G 0.26 TCGA-CJ-4640-01 14 59834241 59834241 C T DAAM1 Missense_Mutation p.S984L 0.26 tolerated(0.27) benign(0.173) TCGA-CJ-4640-01 14 95566195 95566195 G T DICER1 Silent p.P1376P 0.04 TCGA-CJ-4640-01 15 75942381 75942381 G T SNX33 Missense_Mutation p.W313L 0.11 deleterious(0) probably_damaging(0.996) TCGA-CJ-4640-01 16 18804527 18804527 C A ARL6IP1 3'UTR 0.19 TCGA-CJ-4640-01 16 20355352 20355352 A G UMOD Missense_Mutation p.M442T 0.19 tolerated(0.14) benign(0.122) TCGA-CJ-4640-01 16 30776560 30776560 C T RNF40 Missense_Mutation p.T277I 0.20 tolerated(0.09) benign(0.194) TCGA-CJ-4640-01 17 18243556 18243556 G T SHMT1 Nonsense_Mutation p.Y205* 0.24 TCGA-CJ-4640-01 17 37357533 37357533 G C RPL19 Missense_Mutation p.D25H 0.28 deleterious(0) probably_damaging(0.991) TCGA-CJ-4640-01 17 54981679 54981679 G C TRIM25 Missense_Mutation p.I288M 0.11 tolerated(0.19) benign(0.196) TCGA-CJ-4640-01 17 73941664 73941664 T C ACOX1 3'UTR 0.16 TCGA-CJ-4640-01 18 28651750 28651750 G A DSC2 Missense_Mutation p.P649L 0.15 deleterious(0.01) possibly_damaging(0.883) TCGA-CJ-4640-01 18 28908167 28908167 G T DSG1 Missense_Mutation p.A78S 0.25 deleterious(0.05) benign(0.395) TCGA-CJ-4640-01 19 13051666 13051666 G T CALR Missense_Mutation p.D309Y 0.21 tolerated(0.41) probably_damaging(0.926) TCGA-CJ-4640-01 19 17954627 17954627 G T JAK3 Silent p.S89S 0.26 TCGA-CJ-4640-01 19 21299645 21299645 C A ZNF714 Missense_Mutation p.P59T 0.24 deleterious(0) benign(0.439) TCGA-CJ-4640-01 19 35829090 35829090 G A CD22 Silent p.T335T 0.06 TCGA-CJ-4640-01 19 38104130 38104130 T C ZNF540 Missense_Mutation p.L650P 0.29 deleterious(0) probably_damaging(0.99) TCGA-CJ-4640-01 19 39759493 39759493 G T IFNL2 Missense_Mutation p.A63S 0.31 deleterious(0.03) benign(0.385) TCGA-CJ-4640-01 19 41243640 41243640 C G ITPKC Missense_Mutation p.A605G 0.04 deleterious(0.04) benign(0.352) TCGA-CJ-4640-01 19 45207529 45207529 T C CEACAM16 Silent p.S208S 0.12 TCGA-CJ-4640-01 19 50862276 50862276 C T NAPSA Missense_Mutation p.V343I 0.17 tolerated(0.39) probably_damaging(0.999) TCGA-CJ-4640-01 19 51961425 51961425 G T SIGLEC8 Missense_Mutation p.P73T 0.22 tolerated(0.92) benign(0.019) TCGA-CJ-4640-01 19 56162693 56162693 G A CCDC106 Missense_Mutation p.D120N 0.25 tolerated(0.16) benign(0.157) TCGA-CJ-4640-01 19 58945135 58945135 A T ZNF132 Missense_Mutation p.I559N 0.15 tolerated(0.06) possibly_damaging(0.9) TCGA-CJ-4640-01 1 150939613 150939613 G T CERS2 Silent p.A226A 0.14 TCGA-CJ-4640-01 1 160062769 160062769 A G IGSF8 Silent p.L419L 0.12 TCGA-CJ-4640-01 1 174418158 174418158 C A GPR52 Silent p.T303T 0.14 TCGA-CJ-4640-01 1 235618936 235618936 G T B3GALNT2 Missense_Mutation p.D362E 0.16 deleterious(0) benign(0.41) TCGA-CJ-4640-01 1 235918888 235918889 - T LYST Frame_Shift_Ins p.N2373Kfs*36 0.21 TCGA-CJ-4640-01 1 27648817 27648817 C T TMEM222 Silent p.V43V 0.21 TCGA-CJ-4640-01 20 21143148 21143150 GGT - RP4-777D9.2 Intron 0.23 TCGA-CJ-4640-01 22 39811148 39811148 G T TAB1 Splice_Site p.X57_splice 0.22 TCGA-CJ-4640-01 22 40231926 40231926 G A ENTHD1 Silent p.C210C 0.13 TCGA-CJ-4640-01 2 116594279 116594279 C A DPP10 Silent p.G717G 0.33 TCGA-CJ-4640-01 2 132914927 132914927 A G ANKRD30BL Silent p.C96C 0.29 TCGA-CJ-4640-01 2 170027130 170027130 A G LRP2 Missense_Mutation p.C3771R 0.32 probably_damaging(1) TCGA-CJ-4640-01 2 196737119 196737119 G T DNAH7 Missense_Mutation p.A2163E 0.13 deleterious(0) possibly_damaging(0.899) TCGA-CJ-4640-01 2 196737120 196737120 C T DNAH7 Missense_Mutation p.A2163T 0.13 tolerated(0.08) benign(0.122) TCGA-CJ-4640-01 2 201768224 201768224 G T NIF3L1 Missense_Mutation p.M319I 0.16 deleterious(0) possibly_damaging(0.706) TCGA-CJ-4640-01 2 37321281 37321281 A G GPATCH11 Silent p.E195E 0.20 TCGA-CJ-4640-01 2 84945368 84945368 A G DNAH6 Missense_Mutation p.R3218G 0.20 deleterious(0) probably_damaging(0.993) TCGA-CJ-4640-01 3 105389115 105389115 C A CBLB Missense_Mutation p.R884I 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CJ-4640-01 3 47376212 47376212 A G KLHL18 Silent p.P267P 0.09 TCGA-CJ-4640-01 4 114286249 114286249 T A ANK2 Missense_Mutation p.L3648H 0.19 probably_damaging(1) TCGA-CJ-4640-01 4 3210609 3210609 G A HTT Missense_Mutation p.V2088M 0.06 benign(0.004) TCGA-CJ-4640-01 5 34830951 34830951 T C RAI14 3'Flank 0.15 TCGA-CJ-4640-01 5 61875600 61875600 T C LRRC70 Missense_Mutation p.F112S 0.12 deleterious(0.02) possibly_damaging(0.892) TCGA-CJ-4640-01 5 75896708 75896708 C G IQGAP2 Silent p.A381A 0.14 TCGA-CJ-4640-01 5 82833321 82833321 T C VCAN Missense_Mutation p.V1500A 0.08 tolerated(0.11) benign(0.045) TCGA-CJ-4640-01 6 155569248 155569248 C A TIAM2 Missense_Mutation p.P1256Q 0.12 deleterious(0) probably_damaging(1) TCGA-CJ-4640-01 6 40400231 40400231 G A LRFN2 Missense_Mutation p.R208W 0.22 deleterious(0) probably_damaging(0.999) TCGA-CJ-4640-01 7 100483954 100483954 G C SRRT Missense_Mutation p.Q515H 0.24 deleterious(0.03) probably_damaging(0.969) TCGA-CJ-4640-01 7 156752704 156752704 C - NOM1 Frame_Shift_Del p.L490* 0.12 TCGA-CJ-4640-01 7 4272931 4272931 G A SDK1 Missense_Mutation p.A1958T 0.09 tolerated(0.24) benign(0.163) TCGA-CJ-4640-01 8 125109529 125109529 G T FER1L6 Missense_Mutation p.W1571C 0.07 deleterious(0) probably_damaging(0.911) TCGA-CJ-4640-01 8 139603746 139603746 T C COL22A1 Splice_Site p.X1539_splice 0.08 TCGA-CJ-4640-01 8 22464177 22464177 G C CCAR2 Missense_Mutation p.G70R 0.04 deleterious(0) probably_damaging(1) TCGA-CJ-4640-01 8 24170950 24170950 C T ADAM28 Missense_Mutation p.P145S 0.27 tolerated(0.78) benign(0.016) TCGA-CJ-4640-01 8 74858870 74858870 A - TCEB1 Frame_Shift_Del p.C112Vfs*3 0.24 TCGA-CJ-4640-01 9 73424944 73424944 C A TRPM3 Intron 0.18 TCGA-CJ-4640-01 X 16627687 16627687 T C CTPS2 Silent p.Q556Q 0.08 TCGA-CJ-4640-01 X 45606466 45606466 G T MIR222 RNA 0.16 TCGA-CJ-4641-01 10 112269965 112269965 G T DUSP5 Missense_Mutation p.Q312H 0.09 deleterious(0.02) benign(0.115) TCGA-CJ-4641-01 10 112269966 112269966 T C DUSP5 Missense_Mutation p.Y313H 0.09 deleterious(0) possibly_damaging(0.76) TCGA-CJ-4641-01 10 114710470 114710470 C T TCF7L2 5'UTR 0.13 TCGA-CJ-4641-01 10 118359584 118359584 T C PNLIPRP1 Silent p.N280N 0.06 TCGA-CJ-4641-01 10 97366699 97366699 T G ALDH18A1 Silent p.G736G 0.16 TCGA-CJ-4641-01 11 111228240 111228240 G C POU2AF1 Missense_Mutation p.P129R 0.13 deleterious(0) probably_damaging(0.966) TCGA-CJ-4641-01 11 118531589 118531589 T C TREH Missense_Mutation p.D298G 0.12 tolerated(0.21) benign(0.003) TCGA-CJ-4641-01 11 47193866 47193866 A G ARFGAP2 Missense_Mutation p.I213T 0.15 deleterious(0) benign(0.211) TCGA-CJ-4641-01 11 59271273 59271274 CA - OR4D11 Frame_Shift_Del p.T76Nfs*4 0.16 TCGA-CJ-4641-01 11 60739195 60739195 A G CD6 5'UTR 0.11 TCGA-CJ-4641-01 11 65348529 65348529 A C EHBP1L1 Missense_Mutation p.D212A 0.13 deleterious(0.02) benign(0.059) TCGA-CJ-4641-01 12 11183307 11183307 G T TAS2R31 Missense_Mutation p.Q210K 0.17 tolerated(0.18) benign(0.1) TCGA-CJ-4641-01 12 123343703 123343703 C T HIP1R Silent p.L752L 0.25 TCGA-CJ-4641-01 12 132504739 132504739 T C EP400 Missense_Mutation p.F1475L 0.09 unknown(0) TCGA-CJ-4641-01 12 80887186 80887186 A G PTPRQ Missense_Mutation p.K494E 0.16 tolerated(0.97) benign(0.016) TCGA-CJ-4641-01 13 20717063 20717063 G A GJA3 Missense_Mutation p.P122L 0.15 tolerated(0.3) benign(0.001) TCGA-CJ-4641-01 13 25670501 25670501 G A PABPC3 Silent p.A55A 0.11 TCGA-CJ-4641-01 13 53603018 53603018 G T OLFM4 Missense_Mutation p.G16V 0.10 deleterious_low_confidence(0) unknown(0) TCGA-CJ-4641-01 14 105196283 105196283 G T ADSSL1 Missense_Mutation p.R18S 0.20 deleterious_low_confidence(0) unknown(0) TCGA-CJ-4641-01 14 24845237 24845237 C T NFATC4 Silent p.V725V 0.23 TCGA-CJ-4641-01 15 99478140 99478150 AAGGAGTTGCC - IGF1R Frame_Shift_Del p.V1017Cfs*5 0.11 TCGA-CJ-4641-01 16 22588020 22588020 G A RP11-368J21.3 RNA 0.10 TCGA-CJ-4641-01 16 71956438 71956438 A C IST1 Missense_Mutation p.K218T 0.15 tolerated(0.08) benign(0.412) TCGA-CJ-4641-01 17 63554465 63554465 C T AXIN2 Missense_Mutation p.A92T 0.15 tolerated(0.24) probably_damaging(0.997) TCGA-CJ-4641-01 17 72859045 72859045 T C FDXR Missense_Mutation p.D500G 0.11 tolerated(0.23) benign(0.015) TCGA-CJ-4641-01 17 80436689 80436689 C T NARF Silent p.Y178Y 0.23 TCGA-CJ-4641-01 18 47792751 47792751 G A CCDC11 Silent p.T8T 0.16 TCGA-CJ-4641-01 19 36236501 36236501 A T PSENEN 5'UTR 0.20 TCGA-CJ-4641-01 1 12066592 12066592 C T MFN2 Intron 0.10 TCGA-CJ-4641-01 1 152279668 152279668 G T FLG Missense_Mutation p.S2565Y 0.17 benign(0.219) TCGA-CJ-4641-01 1 158609798 158609798 C G SPTA1 Splice_Site p.X1580_splice 0.07 TCGA-CJ-4641-01 1 161091916 161091916 A - DEDD 3'UTR 0.10 TCGA-CJ-4641-01 1 17429548 17429548 C T PADI2 Missense_Mutation p.V95I 0.08 tolerated(0.92) possibly_damaging(0.547) TCGA-CJ-4641-01 1 175323569 175323569 C - TNR Frame_Shift_Del p.D1114Tfs*29 0.09 TCGA-CJ-4641-01 1 197704715 197704715 C A DENND1B Intron 0.16 TCGA-CJ-4641-01 1 207110826 207110826 C A PIGR Missense_Mutation p.C220F 0.14 deleterious(0) probably_damaging(0.999) TCGA-CJ-4641-01 1 207758216 207758216 G A CR1 Missense_Mutation p.R1842H 0.14 tolerated(0.2) possibly_damaging(0.814) TCGA-CJ-4641-01 1 36786097 36786097 T C SH3D21 Silent p.P611P 0.10 TCGA-CJ-4641-01 1 40713786 40713786 T A TMCO2 Missense_Mutation p.L41M 0.15 tolerated_low_confidence(0.09) benign(0.144) TCGA-CJ-4641-01 1 46497886 46497886 C T MAST2 Missense_Mutation p.S1075F 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CJ-4641-01 20 3277596 3277596 C A C20orf194 Missense_Mutation p.V644F 0.05 deleterious(0) probably_damaging(0.999) TCGA-CJ-4641-01 20 34207221 34207221 G T SPAG4 Missense_Mutation p.V300F 0.15 deleterious(0) probably_damaging(0.928) TCGA-CJ-4641-01 20 40068686 40068686 A - CHD6 Frame_Shift_Del p.S1321Lfs*29 0.13 TCGA-CJ-4641-01 20 402784 402784 G A RBCK1 Missense_Mutation p.G311S 0.11 tolerated(0.41) benign(0.098) TCGA-CJ-4641-01 21 37618915 37618915 G A DOPEY2 Missense_Mutation p.C1546Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-CJ-4641-01 2 145156661 145156661 T C ZEB2 Missense_Mutation p.Y698C 0.11 tolerated(0.16) possibly_damaging(0.533) TCGA-CJ-4641-01 2 196620981 196620981 T G DNAH7 Missense_Mutation p.E3821A 0.12 deleterious(0) probably_damaging(0.91) TCGA-CJ-4641-01 2 28752601 28752601 G A PLB1 Silent p.L141L 0.15 TCGA-CJ-4641-01 2 61749804 61749804 T A XPO1 Missense_Mutation p.Q81H 0.12 deleterious(0.01) possibly_damaging(0.739) TCGA-CJ-4641-01 3 10005828 10005828 G A EMC3 Silent p.V237V 0.19 TCGA-CJ-4641-01 3 100073648 100073648 A C NIT2 Missense_Mutation p.E239A 0.04 deleterious(0.01) probably_damaging(0.927) TCGA-CJ-4641-01 3 52441304 52441304 G A BAP1 Nonsense_Mutation p.Q156* 0.21 TCGA-CJ-4641-01 5 140221437 140221437 C T PCDHA8 Silent p.Y177Y 0.11 TCGA-CJ-4641-01 5 140764005 140764005 C T PCDHGA7 Silent p.V513V 0.16 TCGA-CJ-4641-01 5 141367489 141367489 T G RNF14 3'UTR 0.11 TCGA-CJ-4641-01 5 154200918 154200918 C T FAXDC2 Missense_Mutation p.M249I 0.32 tolerated(0.28) benign(0.002) TCGA-CJ-4641-01 5 33643505 33643505 C A ADAMTS12 Missense_Mutation p.G517V 0.05 deleterious(0) probably_damaging(0.998) TCGA-CJ-4641-01 6 108395535 108395535 C A OSTM1 Silent p.R107R 0.15 TCGA-CJ-4641-01 6 29323659 29323659 A G OR5V1 Missense_Mutation p.V105A 0.09 tolerated(0.1) benign(0.021) TCGA-CJ-4641-01 6 73904280 73904280 C A KCNQ5 Missense_Mutation p.P667T 0.09 tolerated(0.67) benign(0.011) TCGA-CJ-4641-01 6 73904281 73904281 C T KCNQ5 Missense_Mutation p.P667L 0.09 tolerated(0.74) benign(0.002) TCGA-CJ-4641-01 7 121753716 121753716 C A AASS Nonsense_Mutation p.E368* 0.04 TCGA-CJ-4641-01 7 134618353 134618353 A T CALD1 Missense_Mutation p.E278V 0.10 deleterious_low_confidence(0) unknown(0) TCGA-CJ-4641-01 7 26225394 26225394 G T NFE2L3 Missense_Mutation p.K692N 0.10 deleterious(0.01) benign(0.056) TCGA-CJ-4641-01 8 107773724 107773724 C T ABRA Silent p.E229E 0.11 TCGA-CJ-4641-01 8 144732657 144732657 G T ZNF623 Missense_Mutation p.K205N 0.16 deleterious(0.01) benign(0.229) TCGA-CJ-4641-01 8 144800451 144800451 T A MAPK15 Missense_Mutation p.Y89N 0.30 deleterious(0) possibly_damaging(0.853) TCGA-CJ-4641-01 8 42821725 42821725 C T HOOK3 Nonsense_Mutation p.Q297* 0.19 TCGA-CJ-4641-01 8 48889311 48889311 G T MCM4 Silent p.V855V 0.12 TCGA-CJ-4641-01 X 149638089 149638089 A C MAMLD1 Missense_Mutation p.K57Q 0.25 tolerated(0.14) probably_damaging(0.974) TCGA-CJ-4641-01 X 70824426 70824426 T C ACRC Silent p.N433N 0.13 TCGA-CJ-4643-01 10 12001192 12001192 A G UPF2 Missense_Mutation p.L783P 0.09 deleterious(0) probably_damaging(1) TCGA-CJ-4643-01 10 13217626 13217626 T C MCM10 Missense_Mutation p.S238P 0.09 tolerated(0.22) benign(0.005) TCGA-CJ-4643-01 10 32860807 32860807 A G CCDC7 Silent p.R480R 0.16 TCGA-CJ-4643-01 10 75276946 75276946 A G USP54 Missense_Mutation p.S1080P 0.10 deleterious_low_confidence(0) benign(0.265) TCGA-CJ-4643-01 10 98087345 98087345 G A DNTT Missense_Mutation p.G332E 0.13 deleterious(0) probably_damaging(1) TCGA-CJ-4643-01 11 113205696 113205696 A C TTC12 Missense_Mutation p.E171D 0.19 tolerated(0.08) benign(0.098) TCGA-CJ-4643-01 11 25100121 25100121 T G LUZP2 Missense_Mutation p.S320A 0.20 tolerated_low_confidence(0.16) benign(0.001) TCGA-CJ-4643-01 11 36518781 36518781 A G TRAF6 Silent p.D161D 0.14 TCGA-CJ-4643-01 11 56043489 56043489 T C OR5T1 Silent p.F125F 0.14 TCGA-CJ-4643-01 11 65830962 65830962 A G SF3B2 Missense_Mutation p.E726G 0.12 tolerated(0.07) benign(0.009) TCGA-CJ-4643-01 11 74862403 74862403 G A SLCO2B1 5'UTR 0.09 TCGA-CJ-4643-01 11 82985697 82985697 C T CCDC90B Silent p.L137L 0.33 TCGA-CJ-4643-01 12 113314465 113314465 C T RPH3A Missense_Mutation p.P322L 0.28 tolerated(0.11) benign(0.001) TCGA-CJ-4643-01 12 132837581 132837581 G C GALNT9 Silent p.A238A 0.21 TCGA-CJ-4643-01 12 40734157 40734157 A G LRRK2 Missense_Mutation p.T2004A 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CJ-4643-01 12 64812710 64812710 T C XPOT Missense_Mutation p.F109L 0.14 tolerated(0.4) benign(0.083) TCGA-CJ-4643-01 12 7531635 7531635 T C CD163L1 Missense_Mutation p.I770M 0.25 tolerated(0.1) benign(0.435) TCGA-CJ-4643-01 12 9307376 9307376 G A PZP Nonsense_Mutation p.Q1204* 0.14 TCGA-CJ-4643-01 13 114149939 114149939 G A TMCO3 Missense_Mutation p.V15I 0.23 tolerated_low_confidence(0.56) benign(0.002) TCGA-CJ-4643-01 13 28895719 28895719 T C FLT1 Missense_Mutation p.I1019V 0.10 deleterious(0) possibly_damaging(0.745) TCGA-CJ-4643-01 13 75936707 75936707 T A TBC1D4 Nonsense_Mutation p.K179* 0.26 TCGA-CJ-4643-01 14 102028031 102028031 T - DIO3 Frame_Shift_Del p.C66* 0.13 TCGA-CJ-4643-01 14 22133447 22133447 T C OR4E2 Missense_Mutation p.F51L 0.12 tolerated(0.65) benign(0.001) TCGA-CJ-4643-01 14 50576310 50576311 GA - VCPKMT 3'UTR 0.27 TCGA-CJ-4643-01 14 50576312 50576312 A T VCPKMT 3'UTR 0.24 TCGA-CJ-4643-01 14 65406155 65406155 G T GPX2 3'UTR 0.33 TCGA-CJ-4643-01 14 74759901 74759902 - G ABCD4 Frame_Shift_Ins p.L257Pfs*22 0.16 TCGA-CJ-4643-01 14 77491962 77491962 G A IRF2BPL Missense_Mutation p.T725M 0.28 deleterious(0) unknown(0) TCGA-CJ-4643-01 15 22928512 22928512 T C CYFIP1 Splice_Site p.X129_splice 0.24 TCGA-CJ-4643-01 15 31320532 31320532 T A TRPM1 Intron 0.30 TCGA-CJ-4643-01 15 42132809 42132809 G C PLA2G4B Missense_Mutation p.S288T 0.28 deleterious(0) benign(0.059) TCGA-CJ-4643-01 15 43319982 43319982 G A UBR1 Silent p.A808A 0.10 TCGA-CJ-4643-01 15 68595444 68595444 G C ITGA11 Missense_Mutation p.R1174G 0.10 deleterious(0.03) possibly_damaging(0.895) TCGA-CJ-4643-01 15 86273858 86273858 A G AKAP13 Missense_Mutation p.H2405R 0.12 tolerated(0.5) benign(0.386) TCGA-CJ-4643-01 16 21209162 21209162 A G ZP2 Missense_Mutation p.S674P 0.12 tolerated(0.32) benign(0) TCGA-CJ-4643-01 16 46766320 46766320 C G MYLK3 Missense_Mutation p.G421A 0.17 tolerated(0.3) benign(0.01) TCGA-CJ-4643-01 16 69971060 69971060 G A WWP2 Silent p.E719E 0.08 TCGA-CJ-4643-01 16 71602127 71602127 C T TAT Missense_Mutation p.E429K 0.10 deleterious(0.01) possibly_damaging(0.884) TCGA-CJ-4643-01 17 11795233 11795233 A T DNAH9 Missense_Mutation p.K3751M 0.24 probably_damaging(0.998) TCGA-CJ-4643-01 17 12847385 12847385 G T ARHGAP44 Splice_Site p.X245_splice 0.24 TCGA-CJ-4643-01 17 26875651 26875651 G A UNC119 Missense_Mutation p.S98L 0.28 deleterious(0) possibly_damaging(0.501) TCGA-CJ-4643-01 17 36482951 36482951 T G GPR179 Missense_Mutation p.E2167D 0.29 tolerated(0.14) benign(0.009) TCGA-CJ-4643-01 17 37873629 37873629 C T ERBB2 Silent p.A598A 0.23 TCGA-CJ-4643-01 17 41234582 41234582 G C BRCA1 Missense_Mutation p.T1399S 0.24 deleterious(0.01) possibly_damaging(0.689) TCGA-CJ-4643-01 17 45914323 45914323 C T LRRC46 Missense_Mutation p.P268L 0.29 deleterious(0.04) benign(0.022) TCGA-CJ-4643-01 17 60062437 60062437 T - MED13 Frame_Shift_Del p.K800Nfs*26 0.10 TCGA-CJ-4643-01 17 61958132 61958132 C G GH2 Missense_Mutation p.W152C 0.21 deleterious(0.01) possibly_damaging(0.762) TCGA-CJ-4643-01 18 12814279 12814279 T C PTPN2 Missense_Mutation p.T261A 0.09 deleterious(0) possibly_damaging(0.75) TCGA-CJ-4643-01 18 21119951 21119951 C T NPC1 Silent p.V873V 0.09 TCGA-CJ-4643-01 18 63430106 63430106 C G CDH7 Missense_Mutation p.H10D 0.17 tolerated(0.2) benign(0.242) TCGA-CJ-4643-01 19 21203558 21203558 T G ZNF430 5'UTR 0.21 TCGA-CJ-4643-01 19 38904046 38904046 A T RASGRP4 Nonsense_Mutation p.C433* 0.31 TCGA-CJ-4643-01 19 42408211 42408211 T G ARHGEF1 Missense_Mutation p.L663V 0.26 deleterious(0.01) probably_damaging(0.938) TCGA-CJ-4643-01 19 4817211 4817211 T A TICAM1 Missense_Mutation p.K393N 0.31 deleterious(0) possibly_damaging(0.776) TCGA-CJ-4643-01 19 5214437 5214437 G A PTPRS Nonsense_Mutation p.Q1517* 0.25 TCGA-CJ-4643-01 19 52857566 52857566 C T ZNF610 Silent p.L85L 0.23 TCGA-CJ-4643-01 19 54872809 54872809 C T LAIR1 Silent p.L26L 0.24 TCGA-CJ-4643-01 19 56515289 56515289 A G NLRP5 Silent p.E90E 0.08 TCGA-CJ-4643-01 1 110709686 110709686 C T SLC6A17 Silent p.G45G 0.18 TCGA-CJ-4643-01 1 120345527 120345527 A G REG4 Intron 0.11 TCGA-CJ-4643-01 1 1269597 1269598 - C TAS1R3 Frame_Shift_Ins p.F772Lfs*71 0.15 TCGA-CJ-4643-01 1 156622274 156622274 C G BCAN Missense_Mutation p.A511G 0.28 tolerated(0.24) benign(0.176) TCGA-CJ-4643-01 1 16254887 16254887 G A SPEN Missense_Mutation p.E718K 0.09 benign(0.242) TCGA-CJ-4643-01 1 167839520 167839520 A G ADCY10 Missense_Mutation p.Y531H 0.20 tolerated(0.21) benign(0.027) TCGA-CJ-4643-01 1 212792650 212792650 C A ATF3 Intron 0.10 TCGA-CJ-4643-01 1 213415458 213415458 A G RPS6KC1 Missense_Mutation p.K880R 0.20 tolerated(0.11) probably_damaging(0.917) TCGA-CJ-4643-01 1 225284866 225284866 C T DNAH14 Missense_Mutation p.T285I 0.09 deleterious(0.01) possibly_damaging(0.684) TCGA-CJ-4643-01 1 236911030 236911030 G T ACTN2 Missense_Mutation p.W490C 0.12 deleterious(0) probably_damaging(1) TCGA-CJ-4643-01 1 248343395 248343398 AGTG TTT OR2M2 Frame_Shift_Del p.L36Ffs*95 0.09 TCGA-CJ-4643-01 1 35853066 35853066 T C ZMYM4 Silent p.F708F 0.23 TCGA-CJ-4643-01 1 43200962 43200962 G A CLDN19 Intron 0.24 TCGA-CJ-4643-01 20 25829497 25829497 G C FAM182B 5'UTR 0.12 TCGA-CJ-4643-01 20 44506358 44506358 G A ZSWIM3 Silent p.A387A 0.24 TCGA-CJ-4643-01 2 105665674 105665674 G A MRPS9 Missense_Mutation p.V61I 0.31 tolerated(0.27) benign(0.008) TCGA-CJ-4643-01 2 110053348 110053348 G - SH3RF3 Splice_Site p.X526_splice 0.27 TCGA-CJ-4643-01 2 132285695 132285695 T G CCDC74A Missense_Mutation p.L51R 0.27 deleterious(0) probably_damaging(0.984) TCGA-CJ-4643-01 2 196599818 196599818 T C SLC39A10 3'UTR 0.11 TCGA-CJ-4643-01 2 198001328 198001328 A G ANKRD44 Silent p.A83A 0.10 TCGA-CJ-4643-01 2 202025510 202025510 G A CFLAR Silent p.V383V 0.10 TCGA-CJ-4643-01 2 204161707 204161707 T C CYP20A1 3'UTR 0.38 TCGA-CJ-4643-01 2 239186456 239186456 T C PER2 Missense_Mutation p.H41R 0.27 deleterious(0) benign(0.03) TCGA-CJ-4643-01 2 63283088 63283088 C A OTX1 Silent p.G234G 0.20 TCGA-CJ-4643-01 3 10188200 10188200 C A VHL Missense_Mutation p.H115N 0.32 deleterious(0) probably_damaging(0.993) TCGA-CJ-4643-01 3 127816145 127816145 G T RUVBL1 Silent p.I338I 0.26 TCGA-CJ-4643-01 3 145828177 145828177 T C PLOD2 Missense_Mutation p.N133D 0.19 tolerated(0.66) benign(0.005) TCGA-CJ-4643-01 3 155199834 155199834 A G PLCH1 Silent p.S1335S 0.15 TCGA-CJ-4643-01 3 183217550 183217550 G T KLHL6 Silent p.G325G 0.20 TCGA-CJ-4643-01 3 24188176 24188176 C A THRB Missense_Mutation p.M174I 0.27 deleterious(0) probably_damaging(0.967) TCGA-CJ-4643-01 3 48493157 48493157 T C ATRIP Missense_Mutation p.V135A 0.10 deleterious(0.02) benign(0.306) TCGA-CJ-4643-01 3 52702561 52702562 - CTG PBRM1 In_Frame_Ins p.L112_T113insQ 0.42 TCGA-CJ-4643-01 4 23891589 23891589 T C PPARGC1A 5'UTR 0.10 TCGA-CJ-4643-01 4 25416116 25416116 T - ANAPC4 Frame_Shift_Del p.P573Lfs*19 0.30 TCGA-CJ-4643-01 4 53786921 53786921 C A SCFD2 Missense_Mutation p.V560L 0.12 tolerated(0.18) possibly_damaging(0.869) TCGA-CJ-4643-01 4 56819305 56819305 A G CEP135 Silent p.K56K 0.09 TCGA-CJ-4643-01 6 24437505 24437505 T C GPLD1 Missense_Mutation p.K678R 0.08 tolerated(0.32) probably_damaging(0.952) TCGA-CJ-4643-01 6 32083400 32083400 C A ATF6B 3'UTR 0.18 TCGA-CJ-4643-01 6 36927128 36927128 G A PI16 Missense_Mutation p.G127S 0.21 deleterious(0) probably_damaging(0.974) TCGA-CJ-4643-01 7 100684091 100684092 - C MUC17 Frame_Shift_Ins p.S3133Qfs*9 0.30 TCGA-CJ-4643-01 7 102716238 102716238 G T ARMC10 Missense_Mutation p.G52W 0.25 deleterious(0) benign(0.206) TCGA-CJ-4643-01 7 119915314 119915314 G A KCND2 Missense_Mutation p.G210R 0.29 tolerated(0.27) possibly_damaging(0.869) TCGA-CJ-4643-01 7 142206990 142206990 C T TRBV10-2 5'UTR 0.23 TCGA-CJ-4643-01 7 37923952 37923952 C A NME8 Missense_Mutation p.Q348K 0.09 deleterious(0.04) possibly_damaging(0.902) TCGA-CJ-4643-01 7 38389092 38389097 GAGTTG TTTTTT TRGV5 Missense_Mutation p.NS72KK 0.12 TCGA-CJ-4643-01 7 66240274 66240274 C T KCTD7 Silent p.S80S 0.10 TCGA-CJ-4643-01 7 82579222 82579222 T C PCLO Missense_Mutation p.K3561R 0.10 unknown(0) TCGA-CJ-4643-01 7 99022964 99022964 C T ATP5J2-PTCD1 Silent p.G446G 0.25 TCGA-CJ-4643-01 9 114145539 114145539 A G KIAA0368 Missense_Mutation p.L1430P 0.09 deleterious(0) probably_damaging(0.999) TCGA-CJ-4643-01 9 135210042 135210042 T - SETX Frame_Shift_Del p.N264Mfs*32 0.37 TCGA-CJ-4643-01 9 27296984 27296984 T C EQTN Missense_Mutation p.I24V 0.30 tolerated(0.68) benign(0.001) TCGA-CJ-4643-01 9 35074039 35074039 A G FANCG 3'UTR 0.14 TCGA-CJ-4643-01 9 36191051 36191051 G A CLTA 5'UTR 0.24 TCGA-CJ-4643-01 9 73479383 73479383 A T TRPM3 Nonsense_Mutation p.C74* 0.16 TCGA-CJ-4643-01 9 79320592 79320592 T C PRUNE2 Missense_Mutation p.S2200G 0.11 tolerated(0.12) benign(0.047) TCGA-CJ-4643-01 9 84531514 84531514 C T SPATA31D5P RNA 0.09 TCGA-CJ-4643-01 X 107224252 107224252 T C TEX13B 3'UTR 0.19 TCGA-CJ-4643-01 X 150912325 150912325 G A CNGA2 Silent p.K450K 0.20 TCGA-CJ-4643-01 X 43590597 43590597 A G MAOA Missense_Mutation p.D252G 0.13 tolerated(0.15) benign(0.004) TCGA-CJ-4643-01 X 54319687 54319687 A T WNK3 Nonsense_Mutation p.Y589* 0.21 TCGA-CJ-4643-01 X 55513642 55513642 C A USP51 Missense_Mutation p.Q577H 0.25 deleterious(0) probably_damaging(0.986) TCGA-CJ-4643-01 X 76891415 76891415 G T ATRX Missense_Mutation p.Q1564K 0.14 probably_damaging(0.998) TCGA-CJ-4643-01 X 79281266 79281266 A G TBX22 Missense_Mutation p.D208G 0.10 deleterious(0) probably_damaging(0.958) TCGA-CJ-4643-01 X 79973239 79973239 C T BRWD3 Missense_Mutation p.M688I 0.12 tolerated(0.29) benign(0.002) TCGA-CJ-4643-01 X 94318171 94318171 C T MIR548M RNA 0.33 TCGA-CJ-4644-01 10 12111026 12111026 G T DHTKD1 5'UTR 0.11 TCGA-CJ-4644-01 10 27702370 27702370 G A PTCHD3 Silent p.Y270Y 0.12 TCGA-CJ-4644-01 10 68526075 68526075 C T CTNNA3 Missense_Mutation p.E410K 0.04 tolerated(0.11) possibly_damaging(0.57) TCGA-CJ-4644-01 11 125546316 125546316 C A ACRV1 Missense_Mutation p.R204L 0.03 deleterious(0) probably_damaging(0.969) TCGA-CJ-4644-01 11 15222420 15222420 G C INSC Silent p.R295R 0.28 TCGA-CJ-4644-01 11 64786159 64786159 G A ARL2 Missense_Mutation p.R98H 0.09 deleterious(0.02) benign(0.412) TCGA-CJ-4644-01 12 112717049 112717049 C G HECTD4 Missense_Mutation p.G413A 0.05 benign(0) TCGA-CJ-4644-01 12 21621622 21621622 G C PYROXD1 Missense_Mutation p.M479I 0.17 tolerated(0.46) benign(0.003) TCGA-CJ-4644-01 12 30790090 30790090 G T IPO8 Missense_Mutation p.L841M 0.10 deleterious(0.03) possibly_damaging(0.902) TCGA-CJ-4644-01 12 75436883 75436883 G T KCNC2 3'UTR 0.24 TCGA-CJ-4644-01 13 32776165 32776165 G T FRY Missense_Mutation p.M1278I 0.10 deleterious(0.01) benign(0.005) TCGA-CJ-4644-01 13 46054427 46054427 T C COG3 Splice_Site p.X183_splice 0.22 TCGA-CJ-4644-01 14 23635685 23635685 C A SLC7A8 Silent p.V72V 0.08 TCGA-CJ-4644-01 14 64408465 64408465 A - SYNE2 Frame_Shift_Del p.H65Lfs*7 0.26 TCGA-CJ-4644-01 14 96789012 96789012 T G ATG2B Missense_Mutation p.E867D 0.16 tolerated(0.14) benign(0.021) TCGA-CJ-4644-01 15 102358604 102358604 C T OR4F15 Missense_Mutation p.A72V 0.22 tolerated_low_confidence(0.52) benign(0.001) TCGA-CJ-4644-01 15 42028804 42028804 A - MGA Frame_Shift_Del p.G1449Vfs*31 0.11 TCGA-CJ-4644-01 15 42128715 42128715 C T JMJD7-PLA2G4B Missense_Mutation p.T223I 0.32 deleterious(0) benign(0.002) TCGA-CJ-4644-01 16 20808364 20808364 G A ACSM3 3'UTR 0.11 TCGA-CJ-4644-01 16 2849526 2849526 C T SNORA3 5'Flank 0.32 TCGA-CJ-4644-01 16 28913241 28913241 A T ATP2A1 Missense_Mutation p.M720L 0.26 deleterious(0) possibly_damaging(0.891) TCGA-CJ-4644-01 16 3100414 3100414 C T MMP25 Silent p.R176R 0.29 TCGA-CJ-4644-01 16 70548368 70548368 G C COG4 Missense_Mutation p.D138E 0.25 deleterious(0) probably_damaging(0.946) TCGA-CJ-4644-01 16 87885388 87885388 G A SLC7A5 Silent p.A202A 0.35 TCGA-CJ-4644-01 17 43323619 43323619 G T FMNL1 Nonsense_Mutation p.E1045* 0.17 TCGA-CJ-4644-01 18 56033230 56033230 G A NEDD4L Splice_Site p.X612_splice 0.08 TCGA-CJ-4644-01 19 14268697 14268697 C G LPHN1 Missense_Mutation p.E849D 0.17 tolerated(0.24) benign(0.012) TCGA-CJ-4644-01 19 22785425 22785425 G A AC011467.1 5'Flank 0.09 TCGA-CJ-4644-01 19 40363154 40363154 C A FCGBP Missense_Mutation p.M4972I 0.33 benign(0.086) TCGA-CJ-4644-01 19 54600414 54600414 T C OSCAR Silent p.G40G 0.09 TCGA-CJ-4644-01 19 56200263 56200263 C T EPN1 Missense_Mutation p.P280L 0.31 tolerated(0.25) unknown(0) TCGA-CJ-4644-01 19 9089241 9089241 A C MUC16 Missense_Mutation p.H858Q 0.21 unknown(0) TCGA-CJ-4644-01 1 11188078 11188078 C G MTOR Missense_Mutation p.V2006L 0.39 deleterious(0) probably_damaging(0.97) TCGA-CJ-4644-01 1 11188100 11188100 C G MTOR Missense_Mutation p.M1998I 0.07 tolerated(0.07) possibly_damaging(0.885) TCGA-CJ-4644-01 1 145115858 145115858 T C SEC22B RNA 0.07 TCGA-CJ-4644-01 1 147091273 147091273 G A BCL9 Missense_Mutation p.V438I 0.06 tolerated(0.2) benign(0.036) TCGA-CJ-4644-01 1 152330075 152330075 G A FLG2 Nonsense_Mutation p.R63* 0.09 TCGA-CJ-4644-01 1 178492550 178492550 A G TEX35 3'Flank 0.10 TCGA-CJ-4644-01 1 201036117 201036117 G A CACNA1S Missense_Mutation p.T852M 0.11 deleterious(0.01) probably_damaging(0.922) TCGA-CJ-4644-01 1 222705449 222705449 G T HHIPL2 Missense_Mutation p.L528I 0.19 tolerated(0.09) possibly_damaging(0.501) TCGA-CJ-4644-01 1 238045723 238045723 T A ZP4 Nonstop_Mutation p.*541Lext*? 0.31 TCGA-CJ-4644-01 1 24993365 24993365 C T SRRM1 Missense_Mutation p.P563L 0.36 unknown(0) TCGA-CJ-4644-01 1 44159696 44159696 C - KDM4A Frame_Shift_Del p.L803Wfs*16 0.26 TCGA-CJ-4644-01 1 47028412 47028412 A G MKNK1 Missense_Mutation p.L291P 0.10 deleterious(0) probably_damaging(0.99) TCGA-CJ-4644-01 1 53287358 53287358 T G ZYG11B 3'UTR 0.13 TCGA-CJ-4644-01 20 57428889 57428889 G A GNAS Missense_Mutation p.G190D 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-CJ-4644-01 21 10862643 10862643 C T IGHV1OR21-1 Silent p.L8L 0.13 TCGA-CJ-4644-01 22 22899279 22899279 G A PRAME 5'UTR 0.20 TCGA-CJ-4644-01 2 109293101 109293101 C T LIMS1 Missense_Mutation p.H291Y 0.10 deleterious(0.01) probably_damaging(0.982) TCGA-CJ-4644-01 2 149861937 149861937 C T KIF5C Missense_Mutation p.R802W 0.07 deleterious(0) probably_damaging(1) TCGA-CJ-4644-01 2 177033940 177033940 G C HOXD3 Missense_Mutation p.G33A 0.28 tolerated(0.29) possibly_damaging(0.868) TCGA-CJ-4644-01 2 177033941 177033941 C T HOXD3 Silent p.G33G 0.28 TCGA-CJ-4644-01 2 179437576 179437576 A G TTN Missense_Mutation p.I24428T 0.08 TCGA-CJ-4644-01 2 179449638 179449638 C T TTN Missense_Mutation p.C21577Y 0.45 TCGA-CJ-4644-01 2 20451396 20451396 T A PUM2 Missense_Mutation p.N1049Y 0.17 deleterious(0.03) possibly_damaging(0.6) TCGA-CJ-4644-01 2 20451397 20451397 C T PUM2 Silent p.K1048K 0.17 TCGA-CJ-4644-01 2 216960605 216960605 A G TMEM169 5'UTR 0.11 TCGA-CJ-4644-01 2 220428159 220428159 C A OBSL1 Silent p.L866L 0.26 TCGA-CJ-4644-01 2 238733023 238733023 C T RBM44 Nonsense_Mutation p.Q805* 0.36 TCGA-CJ-4644-01 2 71360677 71360677 G T MPHOSPH10 Missense_Mutation p.G247W 0.10 deleterious(0.01) probably_damaging(0.955) TCGA-CJ-4644-01 2 85809036 85809036 A G VAMP8 3'UTR 0.21 TCGA-CJ-4644-01 3 10191485 10191485 G T VHL Nonsense_Mutation p.E160* 0.38 TCGA-CJ-4644-01 3 128848936 128848936 G A ISY1 Silent p.L304L 0.28 TCGA-CJ-4644-01 3 131219363 131219363 A C MRPL3 Missense_Mutation p.S94A 0.07 tolerated(0.14) probably_damaging(0.951) TCGA-CJ-4644-01 3 154147408 154147408 C T GPR149 5'UTR 0.05 TCGA-CJ-4644-01 3 185212513 185212513 A G TMEM41A Silent p.L158L 0.28 TCGA-CJ-4644-01 3 27760303 27760303 T G EOMES Missense_Mutation p.N414H 0.44 tolerated(0.53) possibly_damaging(0.805) TCGA-CJ-4644-01 3 52702662 52702662 C T PBRM1 Splice_Site p.X79_splice 0.43 TCGA-CJ-4644-01 3 73432856 73432856 C A PDZRN3 Missense_Mutation p.R954L 0.17 deleterious(0) probably_damaging(0.999) TCGA-CJ-4644-01 4 156289916 156289916 C T MAP9 Missense_Mutation p.R177Q 0.03 tolerated(0.42) benign(0.025) TCGA-CJ-4644-01 5 140209499 140209499 C T PCDHA6 Missense_Mutation p.S608L 0.27 tolerated_low_confidence(0.05) benign(0.411) TCGA-CJ-4644-01 5 150158194 150158194 T C AC010441.1 Silent p.S21S 0.11 TCGA-CJ-4644-01 5 162944783 162944783 T C MAT2B Intron 0.11 TCGA-CJ-4644-01 5 78322244 78322244 A T DMGDH Intron 0.27 TCGA-CJ-4644-01 5 89989964 89989964 T C GPR98 Missense_Mutation p.F2464S 0.06 benign(0.044) TCGA-CJ-4644-01 6 35086049 35086049 A G TCP11 Silent p.V516V 0.21 TCGA-CJ-4644-01 6 53516418 53516418 G T KLHL31 Missense_Mutation p.S628Y 0.33 deleterious(0.03) unknown(0) TCGA-CJ-4644-01 6 8422813 8422813 C T SLC35B3 Missense_Mutation p.G155D 0.10 deleterious(0) probably_damaging(0.968) TCGA-CJ-4644-01 7 107329537 107329537 G A SLC26A4 Silent p.S347S 0.10 TCGA-CJ-4644-01 8 25364809 25364809 C T CDCA2 Missense_Mutation p.A876V 0.26 deleterious(0.01) benign(0.389) TCGA-CJ-4644-01 8 63902748 63902748 G T NKAIN3 Missense_Mutation p.C185F 0.25 deleterious_low_confidence(0.05) benign(0.005) TCGA-CJ-4644-01 9 79323220 79323220 T - PRUNE2 Frame_Shift_Del p.S1324Vfs*21 0.25 TCGA-CJ-4644-01 X 138844151 138844151 A G ATP11C Missense_Mutation p.I873T 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-CJ-4644-01 X 26212519 26212519 A C MAGEB6 Missense_Mutation p.I186L 0.05 tolerated(0.65) benign(0) TCGA-CJ-4644-01 X 86924534 86924534 G T KLHL4 3'UTR 0.26 TCGA-CJ-4869-01 10 115973103 115973103 A T TDRD1 Splice_Site p.X611_splice 0.14 TCGA-CJ-4869-01 10 17277297 17277297 C T VIM Missense_Mutation p.L380F 0.18 deleterious(0) probably_damaging(1) TCGA-CJ-4869-01 10 61874052 61874052 A G ANK3 Missense_Mutation p.L960P 0.15 probably_damaging(0.92) TCGA-CJ-4869-01 11 100909954 100909954 G A PGR Missense_Mutation p.R899W 0.18 deleterious(0) probably_damaging(0.992) TCGA-CJ-4869-01 11 108018219 108018219 T - ACAT1 3'UTR 0.13 TCGA-CJ-4869-01 11 1080916 1080916 C T MUC2 Missense_Mutation p.P434S 0.13 possibly_damaging(0.644) TCGA-CJ-4869-01 11 118769210 118769210 G A BCL9L Missense_Mutation p.H1472Y 0.12 possibly_damaging(0.878) TCGA-CJ-4869-01 11 17474797 17474797 G - ABCC8 Frame_Shift_Del p.Q349Kfs*10 0.17 TCGA-CJ-4869-01 11 55063124 55063124 G C TRIM51HP RNA 0.13 TCGA-CJ-4869-01 11 8948531 8948531 G T C11orf16 Missense_Mutation p.P172H 0.17 deleterious(0) probably_damaging(1) TCGA-CJ-4869-01 12 130648485 130648485 C T FZD10 Missense_Mutation p.T333I 0.12 deleterious(0) probably_damaging(0.999) TCGA-CJ-4869-01 12 132554124 132554124 A G EP400 Missense_Mutation p.T2987A 0.13 benign(0.355) TCGA-CJ-4869-01 12 25232608 25232608 T A LRMP Missense_Mutation p.L52Q 0.18 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-CJ-4869-01 12 2706417 2706417 G - CACNA1C Frame_Shift_Del p.V939Ffs*12 0.14 TCGA-CJ-4869-01 12 48063952 48063952 T G RPAP3 Silent p.T488T 0.16 TCGA-CJ-4869-01 12 49412339 49412339 G C PRKAG1 Intron 0.13 TCGA-CJ-4869-01 12 51089695 51089695 A C DIP2B Missense_Mutation p.R626S 0.22 deleterious(0.01) possibly_damaging(0.827) TCGA-CJ-4869-01 12 56078890 56078890 C T ITGA7 Silent p.G1126G 0.09 TCGA-CJ-4869-01 12 95888731 95888731 A T METAP2 Splice_Site p.X197_splice 0.25 TCGA-CJ-4869-01 13 109792688 109792688 C A MYO16 Missense_Mutation p.S1354R 0.20 deleterious(0.02) benign(0.152) TCGA-CJ-4869-01 13 22067422 22067422 T A MICU2 Missense_Mutation p.E424V 0.10 deleterious(0) probably_damaging(0.999) TCGA-CJ-4869-01 13 37401839 37401839 T G RFXAP Missense_Mutation p.N256K 0.17 tolerated_low_confidence(0.17) probably_damaging(0.969) TCGA-CJ-4869-01 14 94004418 94004418 G T UNC79 Silent p.R225R 0.23 TCGA-CJ-4869-01 15 28230225 28230225 G T OCA2 Missense_Mutation p.T450K 0.17 deleterious(0) probably_damaging(0.999) TCGA-CJ-4869-01 15 55652554 55652554 C T CCPG1 Missense_Mutation p.G473R 0.17 deleterious(0) probably_damaging(0.983) TCGA-CJ-4869-01 16 18908185 18908185 A T SMG1 Missense_Mutation p.N62K 0.19 tolerated_low_confidence(0.27) benign(0.038) TCGA-CJ-4869-01 16 21817523 21817523 T C RRN3P1 RNA 0.14 TCGA-CJ-4869-01 16 57508842 57508842 C T DOK4 Silent p.E154E 0.15 TCGA-CJ-4869-01 16 68009728 68009728 G T DPEP3 Nonsense_Mutation p.Y494* 0.12 TCGA-CJ-4869-01 16 70989419 70989419 A T HYDIN Missense_Mutation p.Y2059N 0.17 probably_damaging(0.986) TCGA-CJ-4869-01 16 89348224 89348224 C T ANKRD11 Missense_Mutation p.G1576S 0.15 probably_damaging(0.999) TCGA-CJ-4869-01 17 19284327 19284327 C A MAPK7 Missense_Mutation p.H269N 0.12 tolerated(0.05) unknown(0) TCGA-CJ-4869-01 17 38938401 38938401 C A KRT27 Missense_Mutation p.K115N 0.16 deleterious(0) probably_damaging(0.999) TCGA-CJ-4869-01 17 45822521 45822521 G A TBX21 Missense_Mutation p.R466Q 0.18 tolerated(0.34) benign(0.002) TCGA-CJ-4869-01 17 72368005 72368005 G A GPR142 Missense_Mutation p.G219R 0.24 deleterious(0.05) probably_damaging(0.993) TCGA-CJ-4869-01 18 61064278 61064278 G T VPS4B Missense_Mutation p.H361N 0.18 deleterious(0) probably_damaging(0.996) TCGA-CJ-4869-01 19 11537537 11537537 G C CCDC151 Missense_Mutation p.T227S 0.22 tolerated(0.08) possibly_damaging(0.557) TCGA-CJ-4869-01 19 39433223 39433225 ACA - FBXO17 3'UTR 0.33 TCGA-CJ-4869-01 19 9061452 9061452 G A MUC16 Missense_Mutation p.A8665V 0.10 unknown(0) TCGA-CJ-4869-01 1 109554274 109554274 C G WDR47 Missense_Mutation p.D139H 0.03 deleterious(0) benign(0.372) TCGA-CJ-4869-01 1 145788844 145788844 T G GPR89A Missense_Mutation p.I247L 0.13 tolerated(1) benign(0) TCGA-CJ-4869-01 1 153745853 153745853 T - INTS3 3'UTR 0.14 TCGA-CJ-4869-01 1 156836721 156836721 C G NTRK1 Missense_Mutation p.L127V 0.10 deleterious(0.01) benign(0.014) TCGA-CJ-4869-01 1 176811614 176811614 C G PAPPA2 3'UTR 0.19 TCGA-CJ-4869-01 1 213009452 213009453 - T C1orf227 Frame_Shift_Ins p.H14Tfs*17 0.18 TCGA-CJ-4869-01 1 214170392 214170392 A T PROX1 Missense_Mutation p.I172L 0.10 deleterious(0) probably_damaging(0.997) TCGA-CJ-4869-01 1 220284279 220284279 G T IARS2 Missense_Mutation p.K493N 0.09 tolerated(0.28) possibly_damaging(0.827) TCGA-CJ-4869-01 1 39321416 39321416 T C RRAGC Missense_Mutation p.D202G 0.14 deleterious(0) benign(0.02) TCGA-CJ-4869-01 1 45480162 45480162 A G UROD Missense_Mutation p.N230D 0.23 tolerated(0.57) benign(0.026) TCGA-CJ-4869-01 20 42979419 42979419 T G R3HDML Missense_Mutation p.F250C 0.14 deleterious(0) benign(0.264) TCGA-CJ-4869-01 2 122363357 122363357 C T CLASP1 Missense_Mutation p.D39N 0.19 deleterious(0.01) benign(0.434) TCGA-CJ-4869-01 2 179462404 179462404 T A TTN Missense_Mutation p.Q19135H 0.15 TCGA-CJ-4869-01 2 201434403 201434403 A G SGOL2 Missense_Mutation p.N164S 0.19 tolerated(0.09) benign(0.14) TCGA-CJ-4869-01 2 231150512 231150512 C T SP140 Missense_Mutation p.A537V 0.16 tolerated(1) benign(0.002) TCGA-CJ-4869-01 2 54880792 54880792 C T SPTBN1 Missense_Mutation p.A1875V 0.05 deleterious(0) possibly_damaging(0.883) TCGA-CJ-4869-01 3 101378845 101378846 CA - ZBTB11 Frame_Shift_Del p.A610Lfs*25 0.14 TCGA-CJ-4869-01 3 121415881 121415881 C T GOLGB1 Nonsense_Mutation p.W1163* 0.20 TCGA-CJ-4869-01 3 121415891 121415891 C T GOLGB1 Missense_Mutation p.S1160N 0.21 benign(0.053) TCGA-CJ-4869-01 3 183381405 183381407 TCT - KLHL24 In_Frame_Del p.L361del 0.20 TCGA-CJ-4869-01 3 52097074 52097074 G T LINC00696 3'Flank 0.21 TCGA-CJ-4869-01 3 52439196 52439196 T - BAP1 Frame_Shift_Del p.N349Tfs*13 0.36 TCGA-CJ-4869-01 3 9934835 9934835 T A JAGN1 Missense_Mutation p.L109H 0.20 deleterious(0) probably_damaging(0.995) TCGA-CJ-4869-01 4 105412438 105412439 - TT CXXC4 Frame_Shift_Ins p.N174Kfs*42 0.40 TCGA-CJ-4869-01 4 126242308 126242308 G T FAT4 Missense_Mutation p.S1581I 0.17 probably_damaging(0.992) TCGA-CJ-4869-01 4 151656456 151656456 A T LRBA Missense_Mutation p.L1903Q 0.15 deleterious(0) probably_damaging(1) TCGA-CJ-4869-01 4 20529950 20529961 AGGTATGAGTAA - SLIT2 Intron 0.14 TCGA-CJ-4869-01 5 1214127 1214129 CTT - SLC6A19 In_Frame_Del p.F279del 0.17 TCGA-CJ-4869-01 5 132439651 132439651 T C HSPA4 Missense_Mutation p.L751P 0.22 tolerated(0.09) possibly_damaging(0.616) TCGA-CJ-4869-01 5 16067810 16067810 C T MARCH11 Missense_Mutation p.A327T 0.14 tolerated(0.43) benign(0.023) TCGA-CJ-4869-01 5 60189022 60189022 A C ERCC8 Intron 0.15 TCGA-CJ-4869-01 5 70798507 70798507 G A BDP1 Silent p.K710K 0.22 TCGA-CJ-4869-01 5 864655 864655 C T BRD9 Silent p.E574E 0.13 TCGA-CJ-4869-01 6 111709251 111709251 T A REV3L Missense_Mutation p.K300N 0.19 tolerated(0.2) benign(0.001) TCGA-CJ-4869-01 6 117704636 117704636 G T ROS1 Missense_Mutation p.D780E 0.21 tolerated(0.24) possibly_damaging(0.695) TCGA-CJ-4869-01 6 4125460 4125460 C T C6orf201 Intron 0.14 TCGA-CJ-4869-01 7 129769357 129769357 G C KLHDC10 Missense_Mutation p.V354L 0.18 tolerated(0.39) benign(0.002) TCGA-CJ-4869-01 7 35678029 35678029 T G HERPUD2 Missense_Mutation p.Y183S 0.16 deleterious(0.01) possibly_damaging(0.714) TCGA-CJ-4869-01 7 49842426 49842426 C A VWC2 Silent p.I272I 0.18 TCGA-CJ-4869-01 7 92732890 92732890 G T SAMD9 Missense_Mutation p.P841T 0.14 deleterious(0) probably_damaging(0.999) TCGA-CJ-4869-01 8 121228653 121228653 C A COL14A1 Missense_Mutation p.T554N 0.17 tolerated(0.46) benign(0.349) TCGA-CJ-4869-01 8 37699044 37699044 T A GPR124 Missense_Mutation p.L1063H 0.26 deleterious(0) probably_damaging(0.984) TCGA-CJ-4869-01 8 70501331 70501331 C T SULF1 Missense_Mutation p.S230L 0.20 deleterious(0) benign(0.445) TCGA-CJ-4869-01 8 82606469 82606469 G C SLC10A5 Missense_Mutation p.L247V 0.20 tolerated(0.37) probably_damaging(0.998) TCGA-CJ-4869-01 9 101017592 101017592 G T TBC1D2 Missense_Mutation p.L78M 0.20 deleterious(0) probably_damaging(1) TCGA-CJ-4869-01 9 116356444 116356444 C T RGS3 Intron 0.19 TCGA-CJ-4869-01 9 117852928 117852928 T A TNC Missense_Mutation p.S124C 0.19 deleterious(0) possibly_damaging(0.566) TCGA-CJ-4869-01 9 136523593 136523593 C A DBH 3'UTR 0.10 TCGA-CJ-4869-01 9 96212845 96212845 A G FAM120AOS Silent p.A200A 0.21 TCGA-CJ-4869-01 X 124030083 124030083 T C TENM1 Silent p.E75E 0.35 TCGA-CJ-4869-01 X 133700599 133700599 T A PLAC1 Silent p.T38T 0.42 TCGA-CJ-4869-01 X 69871375 69871375 G A TEX11 Nonsense_Mutation p.R485* 0.25 TCGA-CJ-4882-01 10 122661797 122661797 G T WDR11 Nonsense_Mutation p.E906* 0.15 TCGA-CJ-4882-01 10 15161511 15161511 A T NMT2 Missense_Mutation p.V334D 0.09 tolerated(0.44) benign(0.006) TCGA-CJ-4882-01 10 17432566 17432566 T A ST8SIA6 Missense_Mutation p.Q85L 0.11 deleterious(0.01) benign(0.159) TCGA-CJ-4882-01 10 91065757 91065757 A C IFIT2 Missense_Mutation p.Q15P 0.17 deleterious(0) possibly_damaging(0.827) TCGA-CJ-4882-01 11 102668828 102668828 G A MMP1 5'UTR 0.17 TCGA-CJ-4882-01 11 121986299 121986299 T C BLID 3'UTR 0.15 TCGA-CJ-4882-01 11 46691049 46691049 A G ATG13 Missense_Mutation p.I514M 0.19 deleterious_low_confidence(0.01) benign(0.073) TCGA-CJ-4882-01 11 46880582 46880582 G A LRP4 Silent p.D1890D 0.09 TCGA-CJ-4882-01 11 5153240 5153240 C A OR52A5 Silent p.G211G 0.04 TCGA-CJ-4882-01 11 55111083 55111083 G T OR4A16 Missense_Mutation p.R136L 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.629) TCGA-CJ-4882-01 11 62751897 62751897 G T SLC22A6 Missense_Mutation p.P89H 0.08 tolerated(0.56) benign(0.043) TCGA-CJ-4882-01 11 63764641 63764641 C A OTUB1 Silent p.G181G 0.13 TCGA-CJ-4882-01 11 94759338 94759338 C A KDM4E Missense_Mutation p.P206H 0.10 deleterious(0) probably_damaging(0.999) TCGA-CJ-4882-01 12 11139225 11139225 C A TAS2R50 Nonsense_Mutation p.E79* 0.13 TCGA-CJ-4882-01 12 112720911 112720911 T C HECTD4 Intron 0.08 TCGA-CJ-4882-01 12 132497632 132497632 C T EP400 Nonsense_Mutation p.R1174* 0.11 TCGA-CJ-4882-01 12 27799072 27799072 C T PPFIBP1 Silent p.L116L 0.09 TCGA-CJ-4882-01 12 53433572 53433572 T C EIF4B Intron 0.27 TCGA-CJ-4882-01 12 56565464 56565464 T - SMARCC2 Frame_Shift_Del p.E698Rfs*6 0.15 TCGA-CJ-4882-01 13 95257668 95257668 A G GPR180 Missense_Mutation p.R57G 0.16 deleterious(0.01) benign(0.046) TCGA-CJ-4882-01 14 106091290 106091290 T A IGHG4 Nonsense_Mutation p.K202* 0.14 TCGA-CJ-4882-01 14 23378782 23378782 A G RBM23 Missense_Mutation p.V30A 0.10 tolerated_low_confidence(0.56) possibly_damaging(0.539) TCGA-CJ-4882-01 14 23855795 23855795 G A MYH6 Missense_Mutation p.A1563V 0.07 tolerated(0.72) benign(0.026) TCGA-CJ-4882-01 14 24808448 24808448 C T RIPK3 Missense_Mutation p.V82M 0.06 deleterious(0.03) possibly_damaging(0.627) TCGA-CJ-4882-01 14 50295452 50295452 C T NEMF Missense_Mutation p.E436K 0.07 tolerated(0.47) benign(0.133) TCGA-CJ-4882-01 15 34072416 34072416 C T RYR3 Missense_Mutation p.R3048C 0.12 possibly_damaging(0.901) TCGA-CJ-4882-01 15 57732654 57732654 A G CGNL1 Missense_Mutation p.N561S 0.15 tolerated(0.26) benign(0.348) TCGA-CJ-4882-01 16 22588031 22588031 C - RP11-368J21.3 RNA 0.10 TCGA-CJ-4882-01 17 10247205 10247205 G T MYH13 Silent p.P602P 0.11 TCGA-CJ-4882-01 17 37829071 37829071 C T PGAP3 Silent p.K316K 0.16 TCGA-CJ-4882-01 17 3988990 3988990 G C ZZEF1 Missense_Mutation p.R874G 0.16 deleterious(0) possibly_damaging(0.72) TCGA-CJ-4882-01 17 40947998 40947998 A T WNK4 Missense_Mutation p.E1126D 0.10 tolerated(0.32) probably_damaging(0.941) TCGA-CJ-4882-01 17 46136474 46136474 A G NFE2L1 Missense_Mutation p.K597R 0.07 tolerated(0.15) benign(0.012) TCGA-CJ-4882-01 17 47899078 47899078 G C KAT7 Missense_Mutation p.V438L 0.08 deleterious(0) probably_damaging(0.998) TCGA-CJ-4882-01 17 59853839 59853839 C A BRIP1 Missense_Mutation p.D674Y 0.11 deleterious(0) probably_damaging(1) TCGA-CJ-4882-01 17 61628100 61628100 C T DCAF7 Missense_Mutation p.A21V 0.11 deleterious(0.03) benign(0.007) TCGA-CJ-4882-01 17 76354730 76354730 C T SOCS3 Silent p.E149E 0.14 TCGA-CJ-4882-01 17 80477948 80477948 C A FOXK2 Missense_Mutation p.Q62K 0.10 tolerated(0.32) probably_damaging(0.997) TCGA-CJ-4882-01 18 28609475 28609475 T - DSC3 Frame_Shift_Del p.V159Lfs*15 0.18 TCGA-CJ-4882-01 18 67817222 67817223 - AC RTTN Frame_Shift_Ins p.I720Sfs*22 0.16 TCGA-CJ-4882-01 19 10574595 10574595 G A PDE4A Missense_Mutation p.G624S 0.07 deleterious(0.01) probably_damaging(0.952) TCGA-CJ-4882-01 19 13080675 13080675 G C DAND5 Missense_Mutation p.Q67H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CJ-4882-01 19 1482902 1482902 G A PCSK4 Silent p.F563F 0.14 TCGA-CJ-4882-01 19 18974988 18974988 T C UPF1 Missense_Mutation p.F929L 0.18 tolerated(0.17) benign(0.012) TCGA-CJ-4882-01 19 33882246 33882246 G A PEPD Silent p.G369G 0.11 TCGA-CJ-4882-01 19 35500996 35500996 A G GRAMD1A Missense_Mutation p.D109G 0.07 deleterious(0.03) probably_damaging(0.963) TCGA-CJ-4882-01 19 37309486 37309486 T - ZNF790 Frame_Shift_Del p.N587Ifs*66 0.11 TCGA-CJ-4882-01 19 39433181 39433181 G A FBXO17 3'UTR 0.13 TCGA-CJ-4882-01 19 45593483 45593483 G T GEMIN7 Missense_Mutation p.E37D 0.14 tolerated(0.52) benign(0.001) TCGA-CJ-4882-01 19 9213720 9213720 G C OR7G2 Missense_Mutation p.S88C 0.09 deleterious(0) probably_damaging(0.997) TCGA-CJ-4882-01 1 115489894 115489894 G T SYCP1 Nonsense_Mutation p.E759* 0.13 TCGA-CJ-4882-01 1 156646329 156646329 T A NES Missense_Mutation p.E243V 0.11 deleterious(0) probably_damaging(1) TCGA-CJ-4882-01 1 160209814 160209814 A G DCAF8 Silent p.D132D 0.19 TCGA-CJ-4882-01 1 206822277 206822277 C T DYRK3 Silent p.P578P 0.18 TCGA-CJ-4882-01 1 206972280 206972280 C G IL19 Missense_Mutation p.S14C 0.14 deleterious_low_confidence(0.01) benign(0.047) TCGA-CJ-4882-01 1 207108891 207108891 A G PIGR Missense_Mutation p.W440R 0.11 deleterious(0) probably_damaging(1) TCGA-CJ-4882-01 1 234454501 234454501 T A SLC35F3 Nonsense_Mutation p.L320* 0.12 TCGA-CJ-4882-01 1 248402458 248402458 C A OR2M4 Silent p.T76T 0.04 TCGA-CJ-4882-01 1 40434358 40434358 A G MFSD2A Silent p.K503K 0.08 TCGA-CJ-4882-01 1 46658993 46658993 T G POMGNT1 Missense_Mutation p.N365T 0.12 probably_damaging(0.986) TCGA-CJ-4882-01 1 67396021 67396021 G C MIER1 Intron 0.09 TCGA-CJ-4882-01 22 20307319 20307319 A G DGCR6L Silent p.S38S 0.12 TCGA-CJ-4882-01 22 26860453 26860453 T G HPS4 Missense_Mutation p.E381D 0.10 tolerated(0.52) benign(0.002) TCGA-CJ-4882-01 22 32756660 32756660 C A RFPL3 Silent p.S265S 0.08 TCGA-CJ-4882-01 22 39146323 39146323 A G SUN2 Missense_Mutation p.Y164H 0.10 tolerated(0.61) benign(0.037) TCGA-CJ-4882-01 2 120718482 120718482 G A PTPN4 Missense_Mutation p.G745S 0.16 tolerated(0.65) benign(0.01) TCGA-CJ-4882-01 2 172821890 172821890 T G HAT1 Missense_Mutation p.I114S 0.18 tolerated(0.42) benign(0.234) TCGA-CJ-4882-01 2 179424711 179424711 T A TTN Silent p.T28716T 0.08 TCGA-CJ-4882-01 2 179480458 179480458 C G TTN Missense_Mutation p.E16124Q 0.05 TCGA-CJ-4882-01 2 201485970 201485970 G A AOX1 Splice_Site p.X667_splice 0.06 TCGA-CJ-4882-01 2 21247881 21247881 G A APOB Missense_Mutation p.A787V 0.18 benign(0.002) TCGA-CJ-4882-01 2 228560780 228560780 C A SLC19A3 Missense_Mutation p.A333S 0.16 tolerated(0.24) benign(0.05) TCGA-CJ-4882-01 2 27429797 27429797 C A SLC5A6 Missense_Mutation p.R136L 0.13 deleterious(0) probably_damaging(0.994) TCGA-CJ-4882-01 3 137843364 137843364 T C A4GNT Silent p.L255L 0.15 TCGA-CJ-4882-01 3 150460186 150460186 G C SIAH2 Nonsense_Mutation p.Y239* 0.10 TCGA-CJ-4882-01 3 170884992 170884992 C - TNIK Frame_Shift_Del p.E281Nfs*3 0.10 TCGA-CJ-4882-01 3 32030516 32030516 G C ZNF860 5'UTR 0.09 TCGA-CJ-4882-01 3 47125260 47125260 C - SETD2 Frame_Shift_Del p.D2004Ifs*2 0.15 TCGA-CJ-4882-01 3 52443600 52443600 T G BAP1 Missense_Mutation p.E31A 0.15 deleterious(0) probably_damaging(0.957) TCGA-CJ-4882-01 4 10447285 10447285 T C ZNF518B Missense_Mutation p.K223R 0.10 tolerated(0.23) benign(0.012) TCGA-CJ-4882-01 4 108935617 108935617 A G HADH Missense_Mutation p.S98G 0.11 tolerated(0.45) benign(0.001) TCGA-CJ-4882-01 4 153573992 153573992 G A TMEM154 Missense_Mutation p.A51V 0.06 tolerated(0.21) benign(0.031) TCGA-CJ-4882-01 4 31144244 31144244 G T PCDH7 Missense_Mutation p.D1181Y 0.15 deleterious(0.01) possibly_damaging(0.742) TCGA-CJ-4882-01 5 139244754 139244754 G A NRG2 Intron 0.10 TCGA-CJ-4882-01 5 95091182 95091182 C T RHOBTB3 Silent p.D255D 0.04 TCGA-CJ-4882-01 6 10430189 10430189 G A LINC00518 RNA 0.11 TCGA-CJ-4882-01 6 154412531 154412532 AA - OPRM1 Frame_Shift_Del p.N457Lfs*9 0.20 TCGA-CJ-4882-01 6 161032714 161032714 T A LPA Missense_Mutation p.H828L 0.13 tolerated(0.34) possibly_damaging(0.905) TCGA-CJ-4882-01 6 40399478 40399478 A T LRFN2 Missense_Mutation p.S459T 0.05 tolerated(0.77) benign(0.08) TCGA-CJ-4882-01 6 56334937 56334937 T - DST Frame_Shift_Del p.I4866Sfs*5 0.16 TCGA-CJ-4882-01 6 89859085 89859085 C - PM20D2 Frame_Shift_Del p.P190Hfs*17 0.16 TCGA-CJ-4882-01 7 148802500 148802500 T G ZNF425 Missense_Mutation p.N155H 0.14 tolerated(0.58) benign(0) TCGA-CJ-4882-01 7 50070788 50070788 A T ZPBP Silent p.L202L 0.16 TCGA-CJ-4882-01 7 98457932 98457932 G A TMEM130 Nonsense_Mutation p.Q141* 0.10 TCGA-CJ-4882-01 8 106815671 106815671 T C ZFPM2 Missense_Mutation p.C1121R 0.15 deleterious(0) probably_damaging(0.999) TCGA-CJ-4882-01 8 27605739 27605739 T G CCDC25 Missense_Mutation p.T136P 0.12 deleterious(0) probably_damaging(0.935) TCGA-CJ-4882-01 9 137591804 137591804 G A COL5A1 Silent p.K109K 0.07 TCGA-CJ-4882-01 X 103080261 103080261 C T RAB9B Missense_Mutation p.E152K 0.05 deleterious(0) probably_damaging(1) TCGA-CJ-4882-01 X 111914248 111914248 T A LHFPL1 Missense_Mutation p.Q124L 0.33 deleterious(0) benign(0.371) TCGA-CJ-4882-01 X 55247032 55247032 G C PAGE5 5'UTR 0.29 TCGA-CJ-4899-01 10 5789077 5789077 A C FAM208B Silent p.S1231S 0.07 TCGA-CJ-4899-01 11 118263549 118263549 G C UBE4A Missense_Mutation p.V1012L 0.23 deleterious(0) probably_damaging(0.969) TCGA-CJ-4899-01 11 27147298 27147298 G T BBOX1 Missense_Mutation p.A312S 0.21 tolerated(0.69) benign(0.022) TCGA-CJ-4899-01 11 27147299 27147299 C A BBOX1 Missense_Mutation p.A312D 0.20 tolerated(0.45) possibly_damaging(0.506) TCGA-CJ-4899-01 11 65714961 65714961 C T TSGA10IP RNA 0.11 TCGA-CJ-4899-01 12 25232338 25232338 T G LRMP Nonsense_Mutation p.Y26* 0.03 TCGA-CJ-4899-01 12 53899955 53899955 G A TARBP2 3'UTR 0.15 TCGA-CJ-4899-01 14 53020188 53020188 G A GPR137C Missense_Mutation p.G108D 0.04 tolerated(0.63) unknown(0) TCGA-CJ-4899-01 14 74972836 74972836 C T LTBP2 Silent p.V1364V 0.14 TCGA-CJ-4899-01 15 50835798 50835798 T A USP50 Missense_Mutation p.K147N 0.16 tolerated(0.43) possibly_damaging(0.609) TCGA-CJ-4899-01 15 50891464 50891464 A C TRPM7 Missense_Mutation p.I1006M 0.14 tolerated(0.52) probably_damaging(0.954) TCGA-CJ-4899-01 16 30777596 30777596 G T RNF40 Missense_Mutation p.R369L 0.23 deleterious(0) benign(0.015) TCGA-CJ-4899-01 17 19470436 19470436 A G SLC47A1 Missense_Mutation p.S402G 0.17 deleterious(0) benign(0.41) TCGA-CJ-4899-01 17 26919284 26919284 T - SPAG5 Frame_Shift_Del p.D327Mfs*24 0.20 TCGA-CJ-4899-01 17 56232813 56232813 A G OR4D1 Missense_Mutation p.Q100R 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-CJ-4899-01 17 74721938 74721938 C T JMJD6 Splice_Site p.X44_splice 0.15 TCGA-CJ-4899-01 18 13056647 13056647 G A CEP192 Missense_Mutation p.G1353D 0.03 tolerated(0.05) possibly_damaging(0.881) TCGA-CJ-4899-01 18 19154328 19154329 - T ESCO1 Frame_Shift_Ins p.C160Vfs*2 0.21 TCGA-CJ-4899-01 18 25583110 25583110 C T CDH2 Missense_Mutation p.A291T 0.20 deleterious(0) probably_damaging(0.933) TCGA-CJ-4899-01 19 39880362 39880362 G C PAF1 Missense_Mutation p.H70Q 0.15 deleterious(0.01) possibly_damaging(0.767) TCGA-CJ-4899-01 19 50374936 50374936 G A AKT1S1 Silent p.P185P 0.17 TCGA-CJ-4899-01 1 12854406 12854406 G A PRAMEF1 Silent p.L210L 0.11 TCGA-CJ-4899-01 1 166816822 166816822 C G POGK Silent p.T117T 0.17 TCGA-CJ-4899-01 1 207643193 207643193 G A CR2 Missense_Mutation p.R324H 0.05 tolerated(0.42) benign(0.008) TCGA-CJ-4899-01 1 207648341 207648341 C T CR2 Silent p.S832S 0.03 TCGA-CJ-4899-01 1 228246774 228246774 G T WNT3A Missense_Mutation p.D223Y 0.14 deleterious(0.01) possibly_damaging(0.841) TCGA-CJ-4899-01 20 31690805 31690805 C A BPIFB4 Missense_Mutation p.N555K 0.17 tolerated(0.11) benign(0.022) TCGA-CJ-4899-01 20 40033900 40033900 C T CHD6 Missense_Mutation p.G2494E 0.18 deleterious(0) probably_damaging(1) TCGA-CJ-4899-01 20 43836172 43836172 G A SEMG1 Silent p.Q78Q 0.06 TCGA-CJ-4899-01 22 42071041 42071041 C T NHP2L1 Missense_Mutation p.V95I 0.25 tolerated(0.17) benign(0.092) TCGA-CJ-4899-01 2 112896287 112896287 C A FBLN7 Missense_Mutation p.P19T 0.07 tolerated(0.41) benign(0.05) TCGA-CJ-4899-01 2 189875056 189875056 G - COL3A1 Frame_Shift_Del p.V1326Ffs*61 0.16 TCGA-CJ-4899-01 2 207603138 207603138 C A MDH1B 3'UTR 0.15 TCGA-CJ-4899-01 2 219299387 219299387 G C VIL1 Missense_Mutation p.V547L 0.04 tolerated(1) benign(0.002) TCGA-CJ-4899-01 2 44065669 44065669 G A ABCG5 Intron 0.19 TCGA-CJ-4899-01 2 54176396 54176396 T A PSME4 Missense_Mutation p.K89N 0.20 deleterious(0) benign(0.21) TCGA-CJ-4899-01 2 85768975 85768975 T C MAT2A Silent p.T143T 0.18 TCGA-CJ-4899-01 3 48609479 48609479 C T COL7A1 Splice_Site p.X2342_splice 0.12 TCGA-CJ-4899-01 3 52540712 52540712 G A STAB1 Missense_Mutation p.R612H 0.18 deleterious(0) probably_damaging(0.996) TCGA-CJ-4899-01 5 118280326 118280326 A G DTWD2 Silent p.C79C 0.11 TCGA-CJ-4899-01 5 149743741 149743741 G T TCOF1 Missense_Mutation p.R77L 0.16 deleterious(0) benign(0.026) TCGA-CJ-4899-01 6 160465623 160465623 T G IGF2R Missense_Mutation p.S567A 0.27 tolerated(0.06) benign(0.033) TCGA-CJ-4899-01 7 138958746 138958746 T A UBN2 Silent p.S633S 0.18 TCGA-CJ-4899-01 7 150772425 150772425 G A SLC4A2 Missense_Mutation p.G1044D 0.05 deleterious(0) probably_damaging(1) TCGA-CJ-4899-01 7 23300285 23300285 T C GPNMB Missense_Mutation p.V304A 0.03 tolerated(0.18) benign(0.199) TCGA-CJ-4899-01 8 145666223 145666223 C G TONSL Missense_Mutation p.G348R 0.14 tolerated(0.06) possibly_damaging(0.653) TCGA-CJ-4899-01 8 2818703 2818703 G T CSMD1 Missense_Mutation p.T3221K 0.19 possibly_damaging(0.87) TCGA-CJ-4899-01 9 103947737 103947740 ACAG T LPPR1 5'UTR 0.26 TCGA-CJ-4899-01 X 115576198 115576198 G T SLC6A14 Nonsense_Mutation p.G257* 0.07 TCGA-CJ-4899-01 X 135485423 135485423 G A GPR112 Missense_Mutation p.A2866T 0.07 tolerated(0.09) benign(0.3) TCGA-CJ-4899-01 X 148577954 148577954 T - IDS Frame_Shift_Del p.M57Wfs*12 0.34 TCGA-CJ-4900-01 10 125516758 125516758 G A CPXM2 Missense_Mutation p.R630W 0.24 deleterious(0) probably_damaging(1) TCGA-CJ-4900-01 10 16562527 16562527 G A C1QL3 Missense_Mutation p.R180C 0.05 deleterious(0) probably_damaging(0.99) TCGA-CJ-4900-01 10 32320187 32320187 C G KIF5B Missense_Mutation p.R465S 0.15 tolerated(0.28) benign(0.016) TCGA-CJ-4900-01 10 73053294 73053294 T A UNC5B Missense_Mutation p.F635L 0.05 tolerated(0.58) benign(0.008) TCGA-CJ-4900-01 11 111784509 111784509 C G HSPB2 Missense_Mutation p.P147A 0.25 deleterious(0.01) possibly_damaging(0.828) TCGA-CJ-4900-01 11 124189591 124189591 A C OR8D2 Missense_Mutation p.F168C 0.19 deleterious(0) probably_damaging(0.999) TCGA-CJ-4900-01 11 129722478 129722478 G A TMEM45B Missense_Mutation p.R34Q 0.22 tolerated(0.46) benign(0.001) TCGA-CJ-4900-01 11 14063144 14063144 C A SPON1 RNA 0.22 TCGA-CJ-4900-01 11 77774953 77774953 C G THRSP Missense_Mutation p.P9R 0.17 tolerated(0.84) probably_damaging(0.987) TCGA-CJ-4900-01 12 2016629 2016629 G A CACNA2D4 Missense_Mutation p.T253I 0.28 deleterious(0) possibly_damaging(0.877) TCGA-CJ-4900-01 12 86373526 86373526 C T MGAT4C Silent p.K326K 0.23 TCGA-CJ-4900-01 12 95911974 95911974 G C USP44 Missense_Mutation p.P699A 0.03 tolerated_low_confidence(0.09) benign(0.002) TCGA-CJ-4900-01 13 29599533 29599533 A G MTUS2 Missense_Mutation p.D243G 0.08 deleterious(0.01) possibly_damaging(0.536) TCGA-CJ-4900-01 13 32813993 32813993 T C FRY Missense_Mutation p.L2221S 0.24 deleterious(0.04) probably_damaging(0.94) TCGA-CJ-4900-01 15 34396086 34396086 T C PGBD4 Missense_Mutation p.Y452H 0.04 deleterious(0) probably_damaging(0.999) TCGA-CJ-4900-01 16 4935161 4935161 G A PPL Silent p.N1165N 0.14 TCGA-CJ-4900-01 16 67190518 67190518 A G TRADD Missense_Mutation p.Y16H 0.21 deleterious(0.05) probably_damaging(0.996) TCGA-CJ-4900-01 17 10369732 10369732 G C MYH4 Missense_Mutation p.T69S 0.12 tolerated(0.14) benign(0.219) TCGA-CJ-4900-01 17 43531340 43531340 C G PLEKHM1 Missense_Mutation p.K626N 0.06 deleterious(0) probably_damaging(0.999) TCGA-CJ-4900-01 17 48632612 48632612 G A SPATA20 Missense_Mutation p.R726H 0.07 tolerated(0.12) possibly_damaging(0.663) TCGA-CJ-4900-01 17 5266228 5266228 C T RABEP1 Missense_Mutation p.L529F 0.17 deleterious(0.03) possibly_damaging(0.851) TCGA-CJ-4900-01 19 11319498 11319498 G A DOCK6 Missense_Mutation p.S1651L 0.06 deleterious(0) possibly_damaging(0.902) TCGA-CJ-4900-01 19 12813709 12813709 G A TNPO2 Nonsense_Mutation p.Q745* 0.21 TCGA-CJ-4900-01 19 13941546 13941546 C T ZSWIM4 Silent p.R884R 0.24 TCGA-CJ-4900-01 19 1787180 1787180 C A ATP8B3 Silent p.L1025L 0.22 TCGA-CJ-4900-01 19 42879720 42879720 T C MEGF8 Missense_Mutation p.L2377P 0.14 deleterious(0.04) possibly_damaging(0.877) TCGA-CJ-4900-01 19 44418057 44418057 G A ZNF45 Nonsense_Mutation p.Q511* 0.06 TCGA-CJ-4900-01 1 114440589 114440589 G C AP4B1 Intron 0.13 TCGA-CJ-4900-01 1 120342348 120342348 C G REG4 Missense_Mutation p.K101N 0.25 deleterious(0) probably_damaging(0.986) TCGA-CJ-4900-01 1 160394984 160394984 C T VANGL2 Missense_Mutation p.T461I 0.16 tolerated(0.08) probably_damaging(0.947) TCGA-CJ-4900-01 1 177250282 177250282 C G BRINP2 Missense_Mutation p.S657C 0.18 tolerated(0.05) possibly_damaging(0.533) TCGA-CJ-4900-01 1 197169167 197169167 G T ZBTB41 Nonsense_Mutation p.S146* 0.23 TCGA-CJ-4900-01 1 67561005 67561005 C T C1orf141 Silent p.L172L 0.21 TCGA-CJ-4900-01 20 62128979 62128979 C T EEF1A2 Silent p.A46A 0.20 TCGA-CJ-4900-01 21 46271474 46271474 G A PTTG1IP 3'UTR 0.22 TCGA-CJ-4900-01 22 30517740 30517740 A C HORMAD2 Missense_Mutation p.N177T 0.25 deleterious(0) benign(0.282) TCGA-CJ-4900-01 22 43831006 43831006 G A MPPED1 Missense_Mutation p.V93I 0.04 deleterious(0) possibly_damaging(0.874) TCGA-CJ-4900-01 2 211019187 211019187 T C KANSL1L Silent p.L40L 0.20 TCGA-CJ-4900-01 3 10191480 10191480 T A VHL Missense_Mutation p.L158Q 0.25 deleterious(0) probably_damaging(0.993) TCGA-CJ-4900-01 4 47561040 47561040 A G ATP10D Silent p.A845A 0.20 TCGA-CJ-4900-01 5 134113264 134113264 A T DDX46 Missense_Mutation p.D205V 0.20 deleterious(0) possibly_damaging(0.785) TCGA-CJ-4900-01 6 33630395 33630395 A G ITPR3 Missense_Mutation p.T268A 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-CJ-4900-01 6 42858194 42858194 G C C6orf226 3'UTR 0.18 TCGA-CJ-4900-01 7 105902044 105902044 G T NAMPT Missense_Mutation p.T360N 0.19 deleterious(0.02) benign(0.157) TCGA-CJ-4900-01 7 119914985 119914985 G A KCND2 Missense_Mutation p.R100H 0.07 deleterious(0) probably_damaging(1) TCGA-CJ-4900-01 7 123599958 123599958 C A SPAM1 Missense_Mutation p.L489I 0.12 tolerated_low_confidence(0.6) benign(0.006) TCGA-CJ-4900-01 7 141756645 141756645 C T MGAM Missense_Mutation p.P1199L 0.08 deleterious(0) probably_damaging(0.978) TCGA-CJ-4900-01 7 17915345 17915345 C T SNX13 Missense_Mutation p.R170Q 0.15 deleterious(0.01) probably_damaging(0.962) TCGA-CJ-4900-01 8 101541853 101541853 T G ANKRD46 Missense_Mutation p.D70A 0.05 deleterious(0.01) possibly_damaging(0.822) TCGA-CJ-4900-01 9 23704955 23704955 G A ELAVL2 Missense_Mutation p.R150C 0.05 deleterious(0) possibly_damaging(0.85) TCGA-CJ-4900-01 9 33073796 33073796 C T SMU1 Missense_Mutation p.R12H 0.05 deleterious(0.04) benign(0.313) TCGA-CJ-4900-01 X 123680911 123680911 A G TENM1 Missense_Mutation p.C822R 0.16 deleterious(0) probably_damaging(1) TCGA-CJ-4900-01 X 22239808 22239808 A C PHEX Missense_Mutation p.K616T 0.25 deleterious(0.01) possibly_damaging(0.493) TCGA-CJ-4900-01 X 53595734 53595734 T C HUWE1 Missense_Mutation p.M2209V 0.26 benign(0.445) TCGA-CJ-4900-01 X 83588799 83588799 C T HDX Missense_Mutation p.V598I 0.20 tolerated(0.22) benign(0.002) TCGA-CJ-4901-01 10 11805257 11805257 T - ECHDC3 Frame_Shift_Del p.S210Lfs*34 0.29 TCGA-CJ-4901-01 10 26417412 26417412 T C MYO3A Missense_Mutation p.I736T 0.34 deleterious(0) possibly_damaging(0.826) TCGA-CJ-4901-01 10 48429220 48429220 G A GDF10 Silent p.S222S 0.19 TCGA-CJ-4901-01 10 99771036 99771038 GAC A CRTAC1 Frame_Shift_Del p.S28Pfs*4 0.14 TCGA-CJ-4901-01 11 10785191 10785191 A G CTR9 Missense_Mutation p.E320G 0.10 tolerated(1) benign(0.001) TCGA-CJ-4901-01 11 5323105 5323105 C G OR51B4 Silent p.R24R 0.13 TCGA-CJ-4901-01 11 66189623 66189623 T A NPAS4 Missense_Mutation p.S70T 0.24 tolerated(0.05) possibly_damaging(0.718) TCGA-CJ-4901-01 11 72945224 72945224 C A P2RY2 Missense_Mutation p.P7H 0.26 tolerated(0.18) benign(0.001) TCGA-CJ-4901-01 12 100206021 100206021 G C ANKS1B Missense_Mutation p.P95R 0.13 deleterious(0) probably_damaging(0.998) TCGA-CJ-4901-01 12 22778110 22778110 C A ETNK1 Missense_Mutation p.R5S 0.16 deleterious_low_confidence(0) benign(0.002) TCGA-CJ-4901-01 12 53342910 53342910 C T KRT18 5'UTR 0.25 TCGA-CJ-4901-01 12 85421761 85421761 C G TSPAN19 Missense_Mutation p.L60F 0.14 tolerated(0.09) benign(0.396) TCGA-CJ-4901-01 13 95862961 95862961 C A ABCC4 Silent p.V202V 0.16 TCGA-CJ-4901-01 14 20483200 20483200 A T OR4K14 Silent p.S51S 0.14 TCGA-CJ-4901-01 14 74036108 74036108 A - ACOT2 Frame_Shift_Del p.Q55Rfs*13 0.27 TCGA-CJ-4901-01 16 321411 321411 C T RGS11 Missense_Mutation p.V246I 0.11 tolerated(0.39) benign(0.002) TCGA-CJ-4901-01 16 67322104 67322104 G A PLEKHG4 Silent p.P1085P 0.05 TCGA-CJ-4901-01 17 3786739 3786739 C A CAMKK1 Missense_Mutation p.K166N 0.08 deleterious(0) possibly_damaging(0.804) TCGA-CJ-4901-01 17 48629019 48629019 C T SPATA20 Missense_Mutation p.P575L 0.15 tolerated(0.2) benign(0.005) TCGA-CJ-4901-01 17 5086795 5086795 C G ZNF594 Missense_Mutation p.D253H 0.13 tolerated(0.46) benign(0.04) TCGA-CJ-4901-01 17 54403670 54403670 C A ANKFN1 Missense_Mutation p.Q51K 0.11 tolerated_low_confidence(0.53) benign(0.046) TCGA-CJ-4901-01 18 11999109 11999109 A T IMPA2 Silent p.A51A 0.12 TCGA-CJ-4901-01 18 19996969 19996969 G A CTAGE1 Missense_Mutation p.S269L 0.14 tolerated(0.28) benign(0.026) TCGA-CJ-4901-01 18 5410602 5410602 G A EPB41L3 Missense_Mutation p.T695M 0.17 deleterious(0) probably_damaging(0.997) TCGA-CJ-4901-01 19 13041068 13041068 C G FARSA Missense_Mutation p.E158Q 0.13 tolerated(0.16) benign(0.066) TCGA-CJ-4901-01 19 50099582 50099582 G A PRR12 Missense_Mutation p.E664K 0.29 possibly_damaging(0.502) TCGA-CJ-4901-01 19 53612395 53612395 T A ZNF415 Missense_Mutation p.K301N 0.05 deleterious(0.02) probably_damaging(0.985) TCGA-CJ-4901-01 1 114522060 114522060 T C HIPK1 3'Flank 0.13 TCGA-CJ-4901-01 1 16203144 16203144 C - SPEN Frame_Shift_Del p.S285Afs*81 0.33 TCGA-CJ-4901-01 1 197886895 197886895 C T LHX9 5'UTR 0.32 TCGA-CJ-4901-01 1 203472874 203472874 G C OPTC Splice_Site 0.19 TCGA-CJ-4901-01 1 23191471 23191471 G A EPHB2 Missense_Mutation p.V357I 0.09 tolerated(0.09) benign(0.035) TCGA-CJ-4901-01 1 85564293 85564293 A G WDR63 Silent p.G477G 0.08 TCGA-CJ-4901-01 20 2312728 2312728 A G TGM3 Missense_Mutation p.M472V 0.05 tolerated(0.67) benign(0.001) TCGA-CJ-4901-01 20 33334716 33334716 G A NCOA6 Missense_Mutation p.P937S 0.07 benign(0.002) TCGA-CJ-4901-01 22 30067836 30067836 C T NF2 Nonsense_Mutation p.R341* 0.41 TCGA-CJ-4901-01 22 38097437 38097437 G T TRIOBP Missense_Mutation p.R22L 0.33 tolerated_low_confidence(0.31) benign(0.004) TCGA-CJ-4901-01 2 179436709 179436709 G A TTN Missense_Mutation p.A24717V 0.16 TCGA-CJ-4901-01 2 216198084 216198084 G - ATIC Frame_Shift_Del p.G276Efs*66 0.09 TCGA-CJ-4901-01 2 50779973 50779973 A T NRXN1 Missense_Mutation p.I544K 0.11 deleterious(0) probably_damaging(0.995) TCGA-CJ-4901-01 3 113499964 113499964 G T ATP6V1A Missense_Mutation p.L50F 0.13 deleterious(0) probably_damaging(0.984) TCGA-CJ-4901-01 3 121339403 121339403 C T FBXO40 5'UTR 0.09 TCGA-CJ-4901-01 3 142509938 142509938 A T TRPC1 Missense_Mutation p.S459C 0.28 deleterious(0) probably_damaging(0.963) TCGA-CJ-4901-01 3 150917067 150917067 G A GPR171 Missense_Mutation p.T36I 0.04 tolerated(0.07) benign(0.013) TCGA-CJ-4901-01 3 167184993 167184993 C A SERPINI2 Missense_Mutation p.A110S 0.10 tolerated(0.6) probably_damaging(1) TCGA-CJ-4901-01 3 181430951 181430951 G C SOX2 Missense_Mutation p.G268A 0.05 deleterious(0.02) benign(0.425) TCGA-CJ-4901-01 3 49054739 49054750 AACAACATGTAC - DALRD3 In_Frame_Del p.V280_V283del 0.13 TCGA-CJ-4901-01 3 85961624 85961624 A T CADM2 Missense_Mutation p.I204F 0.13 deleterious(0) benign(0.212) TCGA-CJ-4901-01 4 100232771 100232771 C T ADH1B Missense_Mutation p.V291I 0.17 deleterious(0.03) benign(0.05) TCGA-CJ-4901-01 4 113540750 113540750 T C C4orf21 Missense_Mutation p.I150V 0.13 tolerated(0.14) benign(0) TCGA-CJ-4901-01 4 160275160 160275160 A T RAPGEF2 Missense_Mutation p.H1377L 0.10 tolerated_low_confidence(0.1) benign(0.001) TCGA-CJ-4901-01 4 7042970 7042970 G A CCDC96 3'UTR 0.12 TCGA-CJ-4901-01 4 71024217 71024217 G T C4orf40 Missense_Mutation p.G83V 0.14 deleterious(0.05) probably_damaging(0.988) TCGA-CJ-4901-01 4 87808950 87808950 C G C4orf36 Missense_Mutation p.R106T 0.10 tolerated(0.08) benign(0.052) TCGA-CJ-4901-01 5 140564017 140564017 G T PCDHB16 Missense_Mutation p.R628M 0.18 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CJ-4901-01 5 161324440 161324440 A T GABRA1 3'UTR 0.14 TCGA-CJ-4901-01 5 54277917 54277917 C T ESM1 Missense_Mutation p.G120D 0.30 tolerated(0.12) probably_damaging(0.968) TCGA-CJ-4901-01 5 56777377 56777377 T C ACTBL2 3'UTR 0.17 TCGA-CJ-4901-01 6 41065225 41065225 G T NFYA 3'UTR 0.17 TCGA-CJ-4901-01 7 111517174 111517174 G T DOCK4 Missense_Mutation p.F552L 0.15 tolerated(0.77) benign(0.001) TCGA-CJ-4901-01 7 127014965 127014965 G T ZNF800 Missense_Mutation p.A142E 0.08 deleterious(0) probably_damaging(0.991) TCGA-CJ-4901-01 8 113301593 113301593 C A CSMD3 Splice_Site p.X3050_splice 0.33 TCGA-CJ-4901-01 8 11710851 11710851 T G CTSB Missense_Mutation p.N38T 0.16 deleterious(0.03) benign(0.148) TCGA-CJ-4901-01 8 124204198 124204198 C A FAM83A Missense_Mutation p.D212E 0.10 tolerated(0.51) benign(0.044) TCGA-CJ-4901-01 9 111800395 111800395 C A TMEM245 Missense_Mutation p.G709V 0.19 deleterious(0) probably_damaging(0.997) TCGA-CJ-4901-01 9 116999978 116999978 G A COL27A1 Missense_Mutation p.G904R 0.18 unknown(0) TCGA-CJ-4901-01 9 35698342 35698342 G A TLN1 Missense_Mutation p.S2450L 0.14 deleterious(0) probably_damaging(0.986) TCGA-CJ-4901-01 9 86586212 86586212 T A HNRNPK Missense_Mutation p.E356D 0.18 tolerated(0.26) benign(0.195) TCGA-CJ-4901-01 X 14038611 14038611 C A GEMIN8 Missense_Mutation p.V20L 0.22 deleterious(0.04) possibly_damaging(0.629) TCGA-CJ-4902-01 10 118957020 118957020 C T KCNK18 Silent p.P7P 0.15 TCGA-CJ-4902-01 10 86130886 86130886 A T CCSER2 Silent p.T26T 0.23 TCGA-CJ-4902-01 10 87407096 87407096 C T GRID1 Missense_Mutation p.A686T 0.08 deleterious(0) possibly_damaging(0.449) TCGA-CJ-4902-01 10 98764571 98764571 C T SLIT1 Missense_Mutation p.A1197T 0.07 tolerated(0.53) benign(0.446) TCGA-CJ-4902-01 11 118074350 118074350 G T AMICA1 Missense_Mutation p.L189I 0.22 tolerated(0.34) benign(0.166) TCGA-CJ-4902-01 11 118963206 118963206 C A HMBS Silent p.I248I 0.19 TCGA-CJ-4902-01 11 1264193 1264193 C G MUC5B Missense_Mutation p.T2028S 0.17 unknown(0) TCGA-CJ-4902-01 11 6007841 6007841 G A OR52L1 Missense_Mutation p.A107V 0.06 deleterious(0.03) benign(0.357) TCGA-CJ-4902-01 11 62295513 62295513 A T AHNAK Missense_Mutation p.L2126M 0.18 probably_damaging(0.984) TCGA-CJ-4902-01 11 77919916 77919916 C A USP35 Missense_Mutation p.S500Y 0.16 deleterious(0) unknown(0) TCGA-CJ-4902-01 12 133196058 133196058 G T P2RX2 Missense_Mutation p.E69D 0.19 tolerated(1) benign(0.008) TCGA-CJ-4902-01 12 21472329 21472329 G T SLCO1A2 Intron 0.22 TCGA-CJ-4902-01 12 34175342 34175342 C G ALG10 5'UTR 0.37 TCGA-CJ-4902-01 12 6204730 6204730 A T VWF Missense_Mutation p.Y185N 0.10 deleterious(0.02) probably_damaging(0.964) TCGA-CJ-4902-01 12 9230391 9230391 G A A2M Missense_Mutation p.A1061V 0.14 tolerated(0.16) benign(0.088) TCGA-CJ-4902-01 12 9230405 9230405 G A A2M Silent p.I1056I 0.14 TCGA-CJ-4902-01 13 33111098 33111098 A C N4BP2L2 Intron 0.07 TCGA-CJ-4902-01 14 101347402 101347402 G A RTL1 Missense_Mutation p.R1242C 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CJ-4902-01 14 53213187 53213187 T A STYX Missense_Mutation p.M45K 0.22 tolerated(0.37) benign(0.008) TCGA-CJ-4902-01 14 63417018 63417018 C T KCNH5 Missense_Mutation p.R401H 0.06 tolerated(0.21) possibly_damaging(0.874) TCGA-CJ-4902-01 14 65230548 65230548 G C SPTB Intron 0.12 TCGA-CJ-4902-01 15 22846911 22846911 G C TUBGCP5 Missense_Mutation p.R262S 0.17 tolerated(0.08) benign(0.009) TCGA-CJ-4902-01 15 31266655 31266655 G T MTMR10 Missense_Mutation p.N112K 0.23 tolerated(0.31) probably_damaging(0.999) TCGA-CJ-4902-01 15 34118467 34118467 C T RYR3 Missense_Mutation p.R3721C 0.16 benign(0.002) TCGA-CJ-4902-01 15 38229120 38229120 G A TMCO5A Silent p.T71T 0.07 TCGA-CJ-4902-01 15 51293254 51293254 A G AP4E1 Missense_Mutation p.K1043E 0.22 deleterious(0.02) possibly_damaging(0.555) TCGA-CJ-4902-01 15 86123644 86123644 A G AKAP13 Missense_Mutation p.D782G 0.17 tolerated_low_confidence(1) benign(0.003) TCGA-CJ-4902-01 15 90349608 90349608 T C ANPEP Silent p.K69K 0.19 TCGA-CJ-4902-01 16 15841458 15841458 G C MYH11 Missense_Mutation p.Q801E 0.17 probably_damaging(0.989) TCGA-CJ-4902-01 16 2867459 2867459 T G PRSS21 Splice_Site p.X31_splice 0.17 TCGA-CJ-4902-01 16 31089296 31089296 G A ZNF646 Missense_Mutation p.D551N 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-CJ-4902-01 16 31142592 31142592 C T KAT8 3'UTR 0.14 TCGA-CJ-4902-01 16 48244895 48244895 G A ABCC11 Silent p.G524G 0.09 TCGA-CJ-4902-01 16 85696693 85696693 C T GSE1 Silent p.S789S 0.18 TCGA-CJ-4902-01 17 29586101 29586101 C T NF1 Missense_Mutation p.R1462W 0.06 tolerated(0.19) possibly_damaging(0.727) TCGA-CJ-4902-01 17 39680198 39680198 G A KRT19 Nonsense_Mutation p.Q334* 0.17 TCGA-CJ-4902-01 17 5322725 5322725 G T NUP88 Silent p.R82R 0.16 TCGA-CJ-4902-01 17 72888762 72888762 A T FADS6 Missense_Mutation p.I82N 0.22 deleterious(0) possibly_damaging(0.682) TCGA-CJ-4902-01 17 79257257 79257257 C A SLC38A10 Silent p.V103V 0.28 TCGA-CJ-4902-01 18 56205106 56205106 A T ALPK2 Silent p.P771P 0.18 TCGA-CJ-4902-01 19 39229287 39229288 CT - CAPN12 Frame_Shift_Del p.S244* 0.22 TCGA-CJ-4902-01 1 147380712 147380712 G T GJA8 Missense_Mutation p.L210F 0.10 deleterious(0) possibly_damaging(0.887) TCGA-CJ-4902-01 1 160144415 160144415 C T ATP1A4 Missense_Mutation p.A730V 0.24 deleterious(0) possibly_damaging(0.66) TCGA-CJ-4902-01 1 182841497 182841497 G A DHX9 Missense_Mutation p.R528H 0.20 deleterious(0) probably_damaging(0.997) TCGA-CJ-4902-01 1 190068181 190068181 G A BRINP3 Missense_Mutation p.T423M 0.17 tolerated(0.06) benign(0.182) TCGA-CJ-4902-01 1 26887302 26887302 G A RPS6KA1 Missense_Mutation p.R443H 0.08 deleterious(0) possibly_damaging(0.896) TCGA-CJ-4902-01 1 979247 979251 GCAGG - AGRN Frame_Shift_Del p.G616Vfs*7 0.29 TCGA-CJ-4902-01 20 2819279 2819279 A G PCED1A Missense_Mutation p.L186P 0.15 deleterious(0) probably_damaging(0.961) TCGA-CJ-4902-01 20 47887117 47887117 T A ZNFX1 Missense_Mutation p.Y411F 0.20 deleterious(0) probably_damaging(0.998) TCGA-CJ-4902-01 20 56138156 56138156 T G PCK1 Missense_Mutation p.I228S 0.18 deleterious(0) probably_damaging(0.996) TCGA-CJ-4902-01 22 24659691 24659691 G A POM121L9P RNA 0.11 TCGA-CJ-4902-01 22 41832248 41832248 T G TOB2 3'UTR 0.15 TCGA-CJ-4902-01 2 110310709 110310717 CTGCACAAA - SEPT10 In_Frame_Del p.F370_Q372del 0.11 TCGA-CJ-4902-01 2 114257620 114257620 C T FOXD4L1 Missense_Mutation p.H263Y 0.12 deleterious(0) probably_damaging(0.994) TCGA-CJ-4902-01 2 155555522 155555522 A C KCNJ3 Missense_Mutation p.K79Q 0.19 tolerated(0.29) benign(0.345) TCGA-CJ-4902-01 2 178415573 178415573 T C TTC30B Missense_Mutation p.H640R 0.21 tolerated(0.43) benign(0.194) TCGA-CJ-4902-01 2 21229016 21229016 C - APOB Frame_Shift_Del p.G3575Afs*48 0.17 TCGA-CJ-4902-01 2 24307098 24307100 CTT ACA TP53I3 Missense_Mutation p.K33C 0.15 TCGA-CJ-4902-01 2 27322321 27322321 C T KHK Silent p.G229G 0.29 TCGA-CJ-4902-01 2 64161068 64161068 G A VPS54 Missense_Mutation p.S493L 0.19 tolerated(0.13) benign(0.021) TCGA-CJ-4902-01 2 66667009 66667009 G T MEIS1 Nonsense_Mutation p.E92* 0.08 TCGA-CJ-4902-01 3 10191622 10191623 CA - VHL Frame_Shift_Del p.I206Cfs*49 0.21 TCGA-CJ-4902-01 3 10354336 10354336 C A SEC13 Silent p.R81R 0.05 TCGA-CJ-4902-01 3 119132967 119132967 T A ARHGAP31 Missense_Mutation p.S731T 0.20 tolerated(0.21) benign(0.01) TCGA-CJ-4902-01 3 128758645 128758645 C T EFCC1 Missense_Mutation p.A584V 0.18 tolerated(0.06) benign(0.032) TCGA-CJ-4902-01 3 141161785 141161785 G T ZBTB38 Missense_Mutation p.L185F 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-CJ-4902-01 4 420476 420476 C - ABCA11P RNA 0.27 TCGA-CJ-4902-01 4 5696064 5696064 G A EVC2 Silent p.L150L 0.04 TCGA-CJ-4902-01 4 79458343 79458343 T G FRAS1 Missense_Mutation p.F3763V 0.20 probably_damaging(0.997) TCGA-CJ-4902-01 5 127685089 127685089 C T FBN2 Missense_Mutation p.C980Y 0.14 deleterious(0.01) possibly_damaging(0.7) TCGA-CJ-4902-01 5 137522869 137522869 T C KIF20A Missense_Mutation p.Y814H 0.34 tolerated(0.12) probably_damaging(0.961) TCGA-CJ-4902-01 5 143200170 143200170 T A HMHB1 3'UTR 0.04 TCGA-CJ-4902-01 5 36035845 36035845 C T UGT3A2 Missense_Mutation p.M509I 0.04 tolerated(0.16) benign(0.004) TCGA-CJ-4902-01 6 33359693 33359693 A G KIFC1 5'UTR 0.10 TCGA-CJ-4902-01 6 52993017 52993017 C T GCM1 Missense_Mutation p.C433Y 0.20 tolerated(1) benign(0.006) TCGA-CJ-4902-01 6 7904955 7904955 A G TXNDC5 Missense_Mutation p.C89R 0.15 deleterious(0) probably_damaging(0.976) TCGA-CJ-4902-01 7 65439618 65439618 G A GUSB Missense_Mutation p.A380V 0.22 deleterious(0.01) benign(0.388) TCGA-CJ-4902-01 8 27097578 27097578 C A STMN4 Missense_Mutation p.M167I 0.04 tolerated(0.11) benign(0.017) TCGA-CJ-4902-01 8 43002122 43002122 G T HGSNAT Missense_Mutation p.K50N 0.19 deleterious(0) probably_damaging(0.969) TCGA-CJ-4902-01 9 131469089 131469089 G A PKN3 Missense_Mutation p.G170E 0.10 tolerated(0.27) benign(0.118) TCGA-CJ-4902-01 9 132595806 132595806 G T C9orf78 Intron 0.17 TCGA-CJ-4902-01 9 99697651 99697651 C T NUTM2G Missense_Mutation p.T252M 0.05 deleterious(0) probably_damaging(0.991) TCGA-CJ-4902-01 X 128975882 128975882 A T ZDHHC9 Missense_Mutation p.W14R 0.55 deleterious(0) probably_damaging(0.994) TCGA-CJ-4903-01 10 129906582 129906582 C A MKI67 Missense_Mutation p.M1174I 0.39 tolerated(0.21) benign(0.033) TCGA-CJ-4903-01 10 49617953 49617971 AGAAATCCCTAGAAGAATT - MAPK8 Frame_Shift_Del p.Q95Lfs*6 0.17 TCGA-CJ-4903-01 10 84744979 84744979 G A NRG3 Missense_Mutation p.R570K 0.24 deleterious(0.01) probably_damaging(0.957) TCGA-CJ-4903-01 11 19735259 19735259 C A NAV2 Silent p.V6V 0.29 TCGA-CJ-4903-01 11 31086042 31086042 C - DCDC1 Frame_Shift_Del p.K856Nfs*12 0.35 TCGA-CJ-4903-01 11 46563577 46563577 A G AMBRA1 Missense_Mutation p.S574P 0.09 tolerated_low_confidence(0.08) benign(0.334) TCGA-CJ-4903-01 11 554294 554294 G A LRRC56 3'UTR 0.23 TCGA-CJ-4903-01 11 6233079 6233079 G A FAM160A2 Missense_Mutation p.S873F 0.11 deleterious(0.02) benign(0.009) TCGA-CJ-4903-01 11 92257814 92257814 G A FAT3 Missense_Mutation p.A1103T 0.12 benign(0.206) TCGA-CJ-4903-01 13 24893010 24893010 G T C1QTNF9 Missense_Mutation p.G74V 0.24 deleterious(0) probably_damaging(1) TCGA-CJ-4903-01 13 33232396 33232396 A - PDS5B Frame_Shift_Del p.R112Dfs*3 0.23 TCGA-CJ-4903-01 14 100191787 100191787 C A CYP46A1 Missense_Mutation p.N412K 0.28 deleterious(0.03) probably_damaging(0.976) TCGA-CJ-4903-01 14 25043508 25043508 G A CTSG Silent p.Y179Y 0.29 TCGA-CJ-4903-01 14 33293956 33293956 C T AKAP6 Nonsense_Mutation p.R2313* 0.18 TCGA-CJ-4903-01 14 79434650 79434650 G C NRXN3 Missense_Mutation p.A662P 0.23 deleterious(0) probably_damaging(0.979) TCGA-CJ-4903-01 15 62257054 62257055 AG - VPS13C Frame_Shift_Del p.S1021Ifs*16 0.29 TCGA-CJ-4903-01 15 74925269 74925269 A T EDC3 Missense_Mutation p.V404E 0.18 deleterious(0) probably_damaging(0.993) TCGA-CJ-4903-01 15 83933213 83933213 A G BNC1 Missense_Mutation p.Y264H 0.40 tolerated(0.44) benign(0.004) TCGA-CJ-4903-01 17 3030489 3030489 G A OR1G1 Silent p.A119A 0.14 TCGA-CJ-4903-01 17 3819428 3819428 A G P2RX1 Missense_Mutation p.V31A 0.22 tolerated(0.05) benign(0.4) TCGA-CJ-4903-01 17 40820279 40820279 G T PLEKHH3 Missense_Mutation p.P750T 0.15 tolerated(0.43) probably_damaging(0.951) TCGA-CJ-4903-01 17 40925522 40925522 A G VPS25 Missense_Mutation p.Q10R 0.13 deleterious(0) probably_damaging(0.996) TCGA-CJ-4903-01 17 56233390 56233390 G T OR4D1 Missense_Mutation p.Q292H 0.18 tolerated(0.07) benign(0.012) TCGA-CJ-4903-01 17 62481972 62481972 C T POLG2 Missense_Mutation p.R328Q 0.39 deleterious(0.04) possibly_damaging(0.897) TCGA-CJ-4903-01 17 8702126 8702126 C T MFSD6L Missense_Mutation p.V105M 0.10 tolerated(0.13) benign(0.016) TCGA-CJ-4903-01 19 2043146 2043146 A T MKNK2 Missense_Mutation p.L157Q 0.32 deleterious(0.02) benign(0.211) TCGA-CJ-4903-01 1 160969694 160969694 C A F11R Missense_Mutation p.M222I 0.22 tolerated(0.24) benign(0.017) TCGA-CJ-4903-01 1 229773890 229773890 C T URB2 Missense_Mutation p.A1177V 0.23 deleterious(0.04) benign(0.253) TCGA-CJ-4903-01 1 233150461 233150461 G T PCNXL2 Nonsense_Mutation p.C1634* 0.17 TCGA-CJ-4903-01 1 25688867 25688867 A C RHCE 3'UTR 0.52 TCGA-CJ-4903-01 1 42049239 42049239 G A HIVEP3 Silent p.N410N 0.53 TCGA-CJ-4903-01 20 47591319 47591319 A C ARFGEF2 Missense_Mutation p.K561T 0.30 tolerated(0.66) benign(0.017) TCGA-CJ-4903-01 2 173894949 173894949 C T RAPGEF4 Silent p.N872N 0.30 TCGA-CJ-4903-01 2 178990777 178990777 C G RBM45 Silent p.A433A 0.30 TCGA-CJ-4903-01 2 204305222 204305222 T A RAPH1 Silent p.A897A 0.30 TCGA-CJ-4903-01 3 10188309 10188309 T C VHL Missense_Mutation p.I151T 0.50 deleterious(0) probably_damaging(0.996) TCGA-CJ-4903-01 3 182871518 182871518 A G LAMP3 Silent p.C237C 0.35 TCGA-CJ-4903-01 3 39108073 39108073 A T WDR48 Silent p.V101V 0.22 TCGA-CJ-4903-01 3 49062375 49062375 G A IMPDH2 Missense_Mutation p.L417F 0.05 deleterious(0.02) probably_damaging(0.965) TCGA-CJ-4903-01 3 52643360 52643360 C A PBRM1 Nonsense_Mutation p.E846* 0.38 TCGA-CJ-4903-01 4 144465930 144465930 G A SMARCA5 Missense_Mutation p.R738K 0.20 deleterious(0) possibly_damaging(0.677) TCGA-CJ-4903-01 4 154625344 154625344 C A TLR2 Missense_Mutation p.P429T 0.25 deleterious(0) probably_damaging(0.965) TCGA-CJ-4903-01 4 4411393 4411393 G A NSG1 Missense_Mutation p.D114N 0.11 tolerated(0.1) possibly_damaging(0.554) TCGA-CJ-4903-01 5 1217053 1217053 T C SLC6A19 Missense_Mutation p.L389P 0.37 deleterious(0) probably_damaging(0.998) TCGA-CJ-4903-01 5 19612594 19612594 C T CDH18 Missense_Mutation p.V254I 0.42 tolerated(0.17) benign(0.003) TCGA-CJ-4903-01 5 71495395 71495395 G A MAP1B Silent p.K2071K 0.33 TCGA-CJ-4903-01 5 95728885 95728885 G C PCSK1 Missense_Mutation p.N694K 0.14 tolerated_low_confidence(0.41) benign(0.001) TCGA-CJ-4903-01 6 56472759 56472759 C T DST Intron 0.18 TCGA-CJ-4903-01 6 97562309 97562309 G T KLHL32 Missense_Mutation p.W426C 0.17 deleterious(0) probably_damaging(0.999) TCGA-CJ-4903-01 7 132192713 132192713 C T PLXNA4 Missense_Mutation p.G247D 0.37 deleterious(0) probably_damaging(1) TCGA-CJ-4903-01 7 142649604 142649604 G A KEL Missense_Mutation p.P399S 0.31 tolerated(0.25) benign(0.402) TCGA-CJ-4903-01 7 150675001 150675001 T A KCNH2 Translation_Start_Site p.M1? 0.32 deleterious(0) probably_damaging(0.925) TCGA-CJ-4903-01 7 92733297 92733297 A G SAMD9 Missense_Mutation p.F705S 0.30 deleterious(0) probably_damaging(0.974) TCGA-CJ-4903-01 8 145151520 145151520 C T CYC1 Silent p.L215L 0.23 TCGA-CJ-4903-01 9 114213737 114213737 G A KIAA0368 Missense_Mutation p.L219F 0.15 deleterious(0) probably_damaging(0.996) TCGA-CJ-4903-01 9 131909727 131909727 C A PPP2R4 Missense_Mutation p.P319H 0.40 deleterious(0) probably_damaging(0.989) TCGA-CJ-4903-01 X 13738010 13738010 C T TRAPPC2 Missense_Mutation p.A59T 0.81 tolerated(0.19) benign(0.033) TCGA-CJ-4903-01 X 76855280 76855280 C T ATRX Missense_Mutation p.D1903N 0.29 possibly_damaging(0.473) TCGA-CJ-4904-01 10 28878669 28878669 A G WAC Missense_Mutation p.Y129C 0.05 tolerated(0.08) possibly_damaging(0.594) TCGA-CJ-4904-01 11 108170468 108170468 T G ATM Missense_Mutation p.V1678G 0.26 deleterious(0) benign(0.209) TCGA-CJ-4904-01 11 125850957 125850957 T A CDON Missense_Mutation p.H1088L 0.04 deleterious(0) possibly_damaging(0.796) TCGA-CJ-4904-01 11 16876457 16876457 C T PLEKHA7 Silent p.V167V 0.23 TCGA-CJ-4904-01 11 64013926 64013926 A G PPP1R14B Missense_Mutation p.W74R 0.26 deleterious(0.03) benign(0.33) TCGA-CJ-4904-01 11 94704596 94704596 A C CWC15 Missense_Mutation p.L63V 0.14 deleterious(0) possibly_damaging(0.801) TCGA-CJ-4904-01 12 53012201 53012201 G T KRT73 Silent p.G36G 0.15 TCGA-CJ-4904-01 12 56142619 56142619 C G GDF11 Nonsense_Mutation p.S232* 0.21 TCGA-CJ-4904-01 12 99223072 99223072 G T ANKS1B Nonsense_Mutation p.Y982* 0.05 TCGA-CJ-4904-01 13 111862226 111862226 G A ARHGEF7 Silent p.G136G 0.07 TCGA-CJ-4904-01 13 28840980 28840980 G T PAN3 Missense_Mutation p.D514Y 0.07 deleterious(0) probably_damaging(0.995) TCGA-CJ-4904-01 13 33110883 33110883 A G N4BP2L2 Intron 0.04 TCGA-CJ-4904-01 14 106054130 106054130 G A IGHA2 Missense_Mutation p.A130V 0.16 deleterious(0) probably_damaging(0.976) TCGA-CJ-4904-01 14 44973940 44973940 C G FSCB Missense_Mutation p.A751P 0.08 tolerated(0.11) unknown(0) TCGA-CJ-4904-01 15 43552495 43552495 C T TGM5 Missense_Mutation p.G64E 0.19 deleterious(0) probably_damaging(1) TCGA-CJ-4904-01 15 60741078 60741078 T C NARG2 Silent p.G696G 0.05 TCGA-CJ-4904-01 15 65157582 65157582 C T PLEKHO2 Missense_Mutation p.A323V 0.21 tolerated(0.11) probably_damaging(0.998) TCGA-CJ-4904-01 15 68642956 68642956 T A ITGA11 Missense_Mutation p.E353D 0.23 deleterious(0) possibly_damaging(0.785) TCGA-CJ-4904-01 16 70818692 70818692 T C VAC14 Missense_Mutation p.D158G 0.04 deleterious(0.01) probably_damaging(0.996) TCGA-CJ-4904-01 16 77387747 77387747 C T ADAMTS18 Silent p.K499K 0.06 TCGA-CJ-4904-01 17 17699836 17699836 A G RAI1 Missense_Mutation p.S1192G 0.21 tolerated(0.31) benign(0.002) TCGA-CJ-4904-01 17 33802445 33802445 G T SLFN12L Missense_Mutation p.H422N 0.11 tolerated(0.09) possibly_damaging(0.615) TCGA-CJ-4904-01 17 35836946 35836946 C A TADA2A Nonsense_Mutation p.Y397* 0.08 TCGA-CJ-4904-01 18 46906085 46906085 C G DYM Missense_Mutation p.K79N 0.24 tolerated(0.33) benign(0.015) TCGA-CJ-4904-01 18 72345031 72345031 C A ZNF407 Missense_Mutation p.P686T 0.25 tolerated(0.08) benign(0.439) TCGA-CJ-4904-01 18 74624247 74624247 G - ZNF236 Frame_Shift_Del p.A950Hfs*33 0.15 TCGA-CJ-4904-01 19 44833686 44833686 A G ZNF112 Silent p.S214S 0.06 TCGA-CJ-4904-01 19 47278747 47278747 G A SLC1A5 3'UTR 0.14 TCGA-CJ-4904-01 19 5456615 5456615 C T ZNRF4 Silent p.D371D 0.06 TCGA-CJ-4904-01 19 56459316 56459316 C T NLRP8 Silent p.S16S 0.07 TCGA-CJ-4904-01 19 59057138 59057138 C G TRIM28 Missense_Mutation p.T154S 0.20 tolerated(0.75) probably_damaging(0.992) TCGA-CJ-4904-01 1 100606486 100606486 G A TRMT13 Missense_Mutation p.G194R 0.16 deleterious(0) probably_damaging(1) TCGA-CJ-4904-01 1 169510307 169510307 G C F5 Missense_Mutation p.P1341A 0.21 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-CJ-4904-01 1 201924654 201924654 G A TIMM17A 5'UTR 0.05 TCGA-CJ-4904-01 1 21795329 21795329 C G NBPF3 Silent p.L94L 0.30 TCGA-CJ-4904-01 1 22816881 22816881 A C ZBTB40 Missense_Mutation p.E147A 0.19 tolerated(0.25) benign(0.04) TCGA-CJ-4904-01 1 234565044 234565044 G A TARBP1 Silent p.C966C 0.06 TCGA-CJ-4904-01 1 247320207 247320207 A G ZNF124 Silent p.C177C 0.06 TCGA-CJ-4904-01 1 39318113 39318113 C A RRAGC Missense_Mutation p.S230I 0.05 deleterious(0) probably_damaging(0.999) TCGA-CJ-4904-01 21 41414412 41414412 G A DSCAM Silent p.L1858L 0.08 TCGA-CJ-4904-01 22 32044095 32044095 G A PISD Missense_Mutation p.H105Y 0.23 deleterious(0.02) benign(0.139) TCGA-CJ-4904-01 22 37770332 37770332 C T ELFN2 Missense_Mutation p.V415M 0.07 deleterious(0) probably_damaging(0.994) TCGA-CJ-4904-01 2 215657073 215657073 C G BARD1 Missense_Mutation p.M104I 0.11 tolerated(0.32) possibly_damaging(0.566) TCGA-CJ-4904-01 2 38301774 38301774 G - CYP1B1 Frame_Shift_Del p.P253Rfs*25 0.16 TCGA-CJ-4904-01 2 86359530 86359530 A G PTCD3 Silent p.Q452Q 0.24 TCGA-CJ-4904-01 3 10191562 10191563 - G VHL Frame_Shift_Ins p.E186Gfs*70 0.33 TCGA-CJ-4904-01 3 52621518 52621519 - T PBRM1 Intron 0.28 TCGA-CJ-4904-01 4 100047771 100047771 T - ADH4 Frame_Shift_Del p.F365Lfs*3 0.18 TCGA-CJ-4904-01 4 13605566 13605566 C A BOD1L1 Missense_Mutation p.K986N 0.08 probably_damaging(0.92) TCGA-CJ-4904-01 4 144336751 144336751 G T GAB1 Missense_Mutation p.C65F 0.22 deleterious(0) probably_damaging(1) TCGA-CJ-4904-01 4 176622807 176622807 G A GPM6A Missense_Mutation p.A50V 0.10 deleterious(0) probably_damaging(0.999) TCGA-CJ-4904-01 4 90743427 90743427 A G SNCA Silent p.T92T 0.24 TCGA-CJ-4904-01 5 43619222 43619222 G A NNT Splice_Site p.X229_splice 0.38 TCGA-CJ-4904-01 5 60183321 60183321 G A ERCC8 Silent p.C356C 0.07 TCGA-CJ-4904-01 5 79770584 79770584 C G ZFYVE16 Missense_Mutation p.L1466V 0.06 deleterious(0.03) benign(0.303) TCGA-CJ-4904-01 6 1313357 1313357 T C FOXQ1 Silent p.L140L 0.27 TCGA-CJ-4904-01 6 29054943 29054943 A G OR2B3 Missense_Mutation p.F28S 0.34 tolerated(0.06) benign(0.082) TCGA-CJ-4904-01 7 100211278 100211278 C A MOSPD3 Missense_Mutation p.P154T 0.19 tolerated(0.28) benign(0.006) TCGA-CJ-4904-01 7 139798703 139798703 C - KDM7A Frame_Shift_Del p.E632Kfs*7 0.20 TCGA-CJ-4904-01 8 134034366 134034366 G A TG Missense_Mutation p.R2336Q 0.06 deleterious(0) probably_damaging(1) TCGA-CJ-4904-01 8 13948107 13948107 G A SGCZ Missense_Mutation p.P262S 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-CJ-4904-01 9 111618041 111618041 C T ACTL7B Missense_Mutation p.G57D 0.07 deleterious(0) probably_damaging(1) TCGA-CJ-4904-01 9 135602886 135602886 A T AK8 Missense_Mutation p.M386K 0.24 deleterious(0) benign(0.215) TCGA-CJ-4904-01 X 100668409 100668409 G A HNRNPH2 3'UTR 0.13 TCGA-CJ-4904-01 X 108631719 108631719 T A GUCY2F Silent p.S985S 0.04 TCGA-CJ-4904-01 X 49066823 49066823 G A CACNA1F Missense_Mutation p.T1520M 0.05 deleterious(0.04) possibly_damaging(0.78) TCGA-CJ-4904-01 X 78427406 78427406 G T GPR174 Missense_Mutation p.R301I 0.05 tolerated(0.08) probably_damaging(0.936) TCGA-CJ-4905-01 10 116307474 116307474 C T ABLIM1 Silent p.Q245Q 0.12 TCGA-CJ-4905-01 10 5790452 5790452 A C FAM208B Missense_Mutation p.M1690L 0.23 tolerated(0.05) benign(0.047) TCGA-CJ-4905-01 10 61865763 61865764 TT - ANK3 Frame_Shift_Del p.E1076Afs*7 0.26 TCGA-CJ-4905-01 11 108389044 108389044 G T EXPH5 Silent p.V183V 0.27 TCGA-CJ-4905-01 11 116661335 116661335 G A APOA5 Missense_Mutation p.R204C 0.27 deleterious(0) probably_damaging(0.912) TCGA-CJ-4905-01 11 55321820 55321820 C A OR4C15 Missense_Mutation p.A13E 0.27 deleterious_low_confidence(0.03) unknown(0) TCGA-CJ-4905-01 11 67266179 67266179 A G PITPNM1 Missense_Mutation p.S458P 0.29 tolerated(0.09) benign(0.066) TCGA-CJ-4905-01 11 78154737 78154737 C A NARS2 Missense_Mutation p.R411L 0.18 deleterious(0) probably_damaging(0.993) TCGA-CJ-4905-01 12 112688106 112688106 G C HECTD4 Silent p.T1118T 0.27 TCGA-CJ-4905-01 12 32884434 32884435 - A DNM1L Nonsense_Mutation p.Y449* 0.22 TCGA-CJ-4905-01 12 54757575 54757575 A G GPR84 Missense_Mutation p.Y21H 0.42 deleterious(0) probably_damaging(0.999) TCGA-CJ-4905-01 12 62147529 62147529 T A FAM19A2 Splice_Site p.X87_splice 0.21 TCGA-CJ-4905-01 13 28597599 28597599 T C FLT3 Missense_Mutation p.E769G 0.08 tolerated(0.17) possibly_damaging(0.493) TCGA-CJ-4905-01 13 61987113 61987113 C A PCDH20 Silent p.L373L 0.17 TCGA-CJ-4905-01 14 75136411 75136411 T G AREL1 Missense_Mutation p.S619R 0.28 tolerated(0.14) possibly_damaging(0.874) TCGA-CJ-4905-01 16 30199863 30199863 G C CORO1A Missense_Mutation p.R416T 0.26 tolerated(0.35) benign(0.001) TCGA-CJ-4905-01 16 30740445 30740445 T C SRCAP Silent p.R1939R 0.27 TCGA-CJ-4905-01 16 55794605 55794605 G C CES1P1 Intron 0.11 TCGA-CJ-4905-01 16 87446254 87446254 G - ZCCHC14 Frame_Shift_Del p.F555Lfs*5 0.31 TCGA-CJ-4905-01 17 40120540 40120540 C T CNP Missense_Mutation p.A153V 0.11 tolerated(0.2) benign(0.009) TCGA-CJ-4905-01 17 40706578 40706578 A G HSD17B1 Missense_Mutation p.Q232R 0.33 deleterious(0.01) benign(0.387) TCGA-CJ-4905-01 17 48267076 48267076 A T COL1A1 Silent p.P877P 0.25 TCGA-CJ-4905-01 18 21229082 21229083 - A ANKRD29 Frame_Shift_Ins p.N33* 0.23 TCGA-CJ-4905-01 18 32948335 32948335 A C ZNF396 Missense_Mutation p.S328A 0.16 deleterious_low_confidence(0) benign(0.198) TCGA-CJ-4905-01 19 11725352 11725352 C T ZNF627 Missense_Mutation p.A5V 0.30 tolerated(0.15) benign(0.019) TCGA-CJ-4905-01 19 12907780 12907780 G C PRDX2 3'UTR 0.38 TCGA-CJ-4905-01 19 37879644 37879644 G A ZNF527 Silent p.T231T 0.24 TCGA-CJ-4905-01 19 4180866 4180866 T A SIRT6 Missense_Mutation p.E36V 0.25 tolerated(0.08) benign(0.007) TCGA-CJ-4905-01 19 50905132 50905132 C T POLD1 Silent p.C138C 0.30 TCGA-CJ-4905-01 19 7584511 7584511 C T ZNF358 Missense_Mutation p.T128I 0.34 tolerated(0.06) benign(0.368) TCGA-CJ-4905-01 1 12081816 12081816 G T MIIP Silent p.R11R 0.20 TCGA-CJ-4905-01 1 1249171 1249171 A C CPSF3L Missense_Mutation p.F306V 0.27 deleterious(0) probably_damaging(0.993) TCGA-CJ-4905-01 1 15817905 15817905 G - CASP9 3'Flank 0.25 TCGA-CJ-4905-01 1 169100955 169100955 A T ATP1B1 3'UTR 0.43 TCGA-CJ-4905-01 1 196642242 196642242 G A CFH Missense_Mutation p.V65I 0.30 tolerated(0.37) benign(0.025) TCGA-CJ-4905-01 1 20517187 20517187 C T UBXN10 Missense_Mutation p.R45W 0.30 deleterious(0) probably_damaging(1) TCGA-CJ-4905-01 1 243581274 243581274 T A SDCCAG8 Missense_Mutation p.N583K 0.25 tolerated(0.12) possibly_damaging(0.818) TCGA-CJ-4905-01 20 34778270 34778270 C T EPB41L1 Silent p.V366V 0.22 TCGA-CJ-4905-01 20 43938268 43938268 T C RBPJL Missense_Mutation p.C65R 0.33 tolerated(0.38) benign(0.045) TCGA-CJ-4905-01 20 44049024 44049024 G C PIGT Silent p.L274L 0.12 TCGA-CJ-4905-01 21 47722405 47722405 G A C21orf58 Silent p.A269A 0.26 TCGA-CJ-4905-01 22 32853321 32853321 A T BPIFC Missense_Mutation p.L18H 0.29 tolerated(0.07) possibly_damaging(0.907) TCGA-CJ-4905-01 22 45683306 45683306 A C UPK3A Silent p.A154A 0.42 TCGA-CJ-4905-01 2 152397301 152397301 T C NEB Silent p.E6899E 0.24 TCGA-CJ-4905-01 2 1653137 1653137 C T PXDN Silent p.T805T 0.37 TCGA-CJ-4905-01 2 170011038 170011038 T G LRP2 Missense_Mutation p.E4076A 0.32 benign(0.103) TCGA-CJ-4905-01 2 179479674 179479674 C T TTN Silent p.E16220E 0.12 TCGA-CJ-4905-01 2 182757372 182757372 G A SSFA2 Nonsense_Mutation p.W81* 0.24 TCGA-CJ-4905-01 2 64069233 64069233 A C UGP2 5'UTR 0.25 TCGA-CJ-4905-01 3 112969403 112969403 C T BOC Silent p.N33N 0.22 TCGA-CJ-4905-01 3 122123119 122123119 G A FAM162A Missense_Mutation p.V58M 0.44 deleterious(0) probably_damaging(0.956) TCGA-CJ-4905-01 3 130300584 130300584 G - COL6A6 Frame_Shift_Del p.V1243* 0.26 TCGA-CJ-4905-01 3 45134910 45134910 C G CDCP1 Missense_Mutation p.G496R 0.32 deleterious(0) probably_damaging(1) TCGA-CJ-4905-01 3 52713608 52713614 ATTGGAA - PBRM1 Frame_Shift_Del p.S39Ffs*4 0.28 TCGA-CJ-4905-01 4 146041212 146041212 C A ABCE1 Missense_Mutation p.P351T 0.28 deleterious(0.02) probably_damaging(0.977) TCGA-CJ-4905-01 4 69188621 69188621 C A YTHDC1 Nonsense_Mutation p.E483* 0.27 TCGA-CJ-4905-01 5 139864742 139864743 AT - ANKHD1 Frame_Shift_Del p.T637Sfs*15 0.33 TCGA-CJ-4905-01 5 150853235 150853235 G C SLC36A1 Missense_Mutation p.R242T 0.29 tolerated(0.06) benign(0.04) TCGA-CJ-4905-01 5 89781415 89781415 G A POLR3G Missense_Mutation p.A11T 0.25 deleterious(0.02) probably_damaging(0.981) TCGA-CJ-4905-01 6 15615585 15615585 T G DTNBP1 Missense_Mutation p.H134P 0.27 tolerated(0.22) possibly_damaging(0.451) TCGA-CJ-4905-01 6 35479476 35479476 G T TULP1 Missense_Mutation p.R100S 0.32 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-CJ-4905-01 6 79650693 79650693 T G PHIP Missense_Mutation p.D1728A 0.27 tolerated_low_confidence(0.25) benign(0.014) TCGA-CJ-4905-01 7 123595133 123595133 G A SPAM1 Missense_Mutation p.R346Q 0.20 tolerated(1) benign(0.03) TCGA-CJ-4905-01 8 87229763 87229763 A G SLC7A13 Missense_Mutation p.I372T 0.35 tolerated(0.29) benign(0.138) TCGA-CJ-4905-01 9 39073882 39073882 C G CNTNAP3 3'UTR 0.11 TCGA-CJ-4905-01 9 6014375 6014375 G A RANBP6 Silent p.S411S 0.25 TCGA-CJ-4905-01 9 95997219 95997219 C T WNK2 Missense_Mutation p.A402V 0.06 unknown(0) TCGA-CJ-4905-01 X 100880719 100880719 T - ARMCX3 Frame_Shift_Del p.L251Yfs*14 0.27 TCGA-CJ-4905-01 X 108691325 108691325 C T GUCY2F Silent p.T514T 0.33 TCGA-CJ-4905-01 X 129306270 129306270 G T RAB33A Silent p.V78V 0.22 TCGA-CJ-4905-01 X 63568632 63568632 T A MTMR8 Missense_Mutation p.T214S 0.30 tolerated(0.25) benign(0.03) TCGA-CJ-4905-01 X 71351148 71351148 C A RGAG4 Silent p.G81G 0.31 TCGA-CJ-4907-01 10 105330649 105330649 C A NEURL1 Missense_Mutation p.P36T 0.16 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-CJ-4907-01 10 116595310 116595310 G T FAM160B1 Missense_Mutation p.M103I 0.05 deleterious(0) probably_damaging(0.928) TCGA-CJ-4907-01 11 3109495 3109495 G A OSBPL5 Silent p.S860S 0.08 TCGA-CJ-4907-01 11 57573944 57573944 T C CTNND1 Missense_Mutation p.S630P 0.22 tolerated(0.07) possibly_damaging(0.685) TCGA-CJ-4907-01 11 67119428 67119428 A G POLD4 3'UTR 0.22 TCGA-CJ-4907-01 11 7663540 7663540 C T PPFIBP2 Missense_Mutation p.T510I 0.23 deleterious(0) probably_damaging(0.997) TCGA-CJ-4907-01 11 96124831 96124831 G T JRKL Missense_Mutation p.A340S 0.09 tolerated(0.76) benign(0.1) TCGA-CJ-4907-01 11 99942549 99942549 C A CNTN5 Missense_Mutation p.A471D 0.26 deleterious(0.01) probably_damaging(1) TCGA-CJ-4907-01 12 103240687 103240687 C A PAH Nonsense_Mutation p.E319* 0.27 TCGA-CJ-4907-01 12 113346530 113346530 C A OAS1 Missense_Mutation p.P124T 0.11 tolerated(0.1) benign(0.002) TCGA-CJ-4907-01 12 130845744 130845744 G - PIWIL1 Frame_Shift_Del p.S562Ifs*30 0.10 TCGA-CJ-4907-01 12 26755304 26755304 T - ITPR2 Frame_Shift_Del p.K1226Rfs*6 0.10 TCGA-CJ-4907-01 12 5154474 5154474 C T KCNA5 Silent p.G387G 0.06 TCGA-CJ-4907-01 13 29599346 29599346 G T MTUS2 Nonsense_Mutation p.E181* 0.12 TCGA-CJ-4907-01 13 37014312 37014312 C T CCNA1 Silent p.L364L 0.15 TCGA-CJ-4907-01 14 31376115 31376115 A T STRN3 Nonsense_Mutation p.L619* 0.12 TCGA-CJ-4907-01 14 86089519 86089519 T C FLRT2 Missense_Mutation p.V554A 0.08 deleterious(0) probably_damaging(0.948) TCGA-CJ-4907-01 15 34137144 34137144 G A RYR3 Missense_Mutation p.A4460T 0.35 benign(0.116) TCGA-CJ-4907-01 15 35149171 35149171 C T AQR Missense_Mutation p.R1427H 0.08 tolerated(0.07) benign(0.019) TCGA-CJ-4907-01 15 48441461 48441472 CCAGTATAGCTC - MYEF2 In_Frame_Del p.G492_L495del 0.19 TCGA-CJ-4907-01 15 74239485 74239485 A G LOXL1 Missense_Mutation p.H476R 0.13 deleterious(0) probably_damaging(0.991) TCGA-CJ-4907-01 15 75974707 75974707 G A CSPG4 Missense_Mutation p.P1626L 0.05 deleterious(0) probably_damaging(0.997) TCGA-CJ-4907-01 15 78889071 78889071 G T CHRNA3 Missense_Mutation p.Q465K 0.06 tolerated(1) possibly_damaging(0.867) TCGA-CJ-4907-01 16 7703894 7703894 G A RBFOX1 Missense_Mutation p.V299M 0.17 deleterious(0.01) possibly_damaging(0.598) TCGA-CJ-4907-01 16 88697620 88697620 G A ZC3H18 Silent p.L925L 0.25 TCGA-CJ-4907-01 17 47895315 47895315 A G KAT7 Missense_Mutation p.Y366C 0.27 deleterious(0) probably_damaging(0.987) TCGA-CJ-4907-01 17 57105859 57105859 C T TRIM37 Missense_Mutation p.G725E 0.04 tolerated_low_confidence(0.13) benign(0.009) TCGA-CJ-4907-01 17 59560318 59560318 C A TBX4 Nonsense_Mutation p.S360* 0.05 TCGA-CJ-4907-01 17 72537599 72537599 G T CD300C 3'UTR 0.21 TCGA-CJ-4907-01 18 12353008 12353008 C T AFG3L2 Missense_Mutation p.M438I 0.04 deleterious(0) probably_damaging(0.944) TCGA-CJ-4907-01 18 39567803 39567803 A T PIK3C3 Missense_Mutation p.M187L 0.23 tolerated(0.67) benign(0.03) TCGA-CJ-4907-01 19 19459978 19459978 G A MAU2 Missense_Mutation p.R458Q 0.20 tolerated(0.14) benign(0.421) TCGA-CJ-4907-01 19 3179921 3179921 C A S1PR4 Missense_Mutation p.S377R 0.09 deleterious(0) probably_damaging(0.973) TCGA-CJ-4907-01 19 36014289 36014289 C T SBSN 3'UTR 0.37 TCGA-CJ-4907-01 19 3651895 3651895 C A PIP5K1C Silent p.A352A 0.08 TCGA-CJ-4907-01 19 49119434 49119434 C T RPL18 Missense_Mutation p.R108Q 0.32 tolerated(0.62) benign(0.026) TCGA-CJ-4907-01 19 5219380 5219380 C G PTPRS Silent p.G1288G 0.22 TCGA-CJ-4907-01 1 101705772 101705772 C T S1PR1 3'UTR 0.24 TCGA-CJ-4907-01 1 11174381 11174386 TCAGCC - MTOR In_Frame_Del p.R2430_L2431del 0.15 TCGA-CJ-4907-01 1 11217230 11217230 C A MTOR Missense_Mutation p.C1483F 0.04 deleterious(0) probably_damaging(0.991) TCGA-CJ-4907-01 1 1267928 1267928 G A TAS1R3 Silent p.K339K 0.13 TCGA-CJ-4907-01 1 16058448 16058448 A C PLEKHM2 Missense_Mutation p.I844L 0.17 tolerated(0.22) benign(0.066) TCGA-CJ-4907-01 1 22902868 22902868 C T EPHA8 Silent p.R106R 0.07 TCGA-CJ-4907-01 1 26357724 26357724 C T EXTL1 Silent p.P401P 0.21 TCGA-CJ-4907-01 1 38261312 38261312 G C MANEAL Intron 0.14 TCGA-CJ-4907-01 20 47258752 47258752 C A PREX1 Silent p.R1243R 0.11 TCGA-CJ-4907-01 20 56089655 56089655 G A CTCFL Silent p.S441S 0.31 TCGA-CJ-4907-01 22 25627838 25627838 C G CRYBB2 3'Flank 0.33 TCGA-CJ-4907-01 22 44237743 44237743 A C SULT4A1 Missense_Mutation p.M80R 0.32 tolerated(0.25) benign(0.041) TCGA-CJ-4907-01 22 51178394 51178394 T C ACR Missense_Mutation p.I185T 0.16 tolerated(0.41) benign(0.101) TCGA-CJ-4907-01 2 109113518 109113518 C G GCC2 Missense_Mutation p.L1579V 0.27 deleterious(0) probably_damaging(0.991) TCGA-CJ-4907-01 2 138033572 138033572 T A THSD7B Missense_Mutation p.C826S 0.11 deleterious(0.01) benign(0.291) TCGA-CJ-4907-01 2 179558720 179558720 G T TTN Missense_Mutation p.T10481K 0.23 TCGA-CJ-4907-01 2 39405846 39405846 C G CDKL4 3'UTR 0.31 TCGA-CJ-4907-01 2 43939458 43939458 A - PLEKHH2 Frame_Shift_Del p.A800Lfs*15 0.22 TCGA-CJ-4907-01 2 44457414 44457414 A T PPM1B Intron 0.11 TCGA-CJ-4907-01 2 76975919 76975919 C T LRRTM4 Missense_Mutation p.E559K 0.06 tolerated_low_confidence(0.71) benign(0.022) TCGA-CJ-4907-01 2 90078038 90078038 G A IGKV3D-20 Silent p.T25T 0.05 TCGA-CJ-4907-01 3 113374665 113374665 G T KIAA2018 Missense_Mutation p.S1955Y 0.33 possibly_damaging(0.707) TCGA-CJ-4907-01 3 118621704 118621704 C T IGSF11 Missense_Mutation p.R320Q 0.20 tolerated(0.09) probably_damaging(0.943) TCGA-CJ-4907-01 3 31658488 31658488 G C STT3B Missense_Mutation p.E348D 0.16 tolerated(0.14) benign(0.029) TCGA-CJ-4907-01 4 100239948 100239948 G C ADH1B Silent p.R38R 0.10 TCGA-CJ-4907-01 4 106819134 106819134 C T NPNT Missense_Mutation p.R50C 0.22 deleterious(0) possibly_damaging(0.816) TCGA-CJ-4907-01 4 109783657 109783657 C T COL25A1 Silent p.K399K 0.15 TCGA-CJ-4907-01 4 68380078 68380078 A G CENPC Silent p.A386A 0.34 TCGA-CJ-4907-01 4 9784913 9784913 C T DRD5 Silent p.P420P 0.14 TCGA-CJ-4907-01 5 118484562 118484562 A G DMXL1 Missense_Mutation p.N1014D 0.44 tolerated(0.46) benign(0.002) TCGA-CJ-4907-01 5 134784962 134784962 C A TIFAB 3'UTR 0.19 TCGA-CJ-4907-01 5 137502346 137502346 A T BRD8 Silent p.T286T 0.44 TCGA-CJ-4907-01 5 150925180 150925180 G C FAT2 Missense_Mutation p.F1836L 0.14 benign(0.17) TCGA-CJ-4907-01 5 171481605 171481605 C G STK10 Missense_Mutation p.E874Q 0.10 tolerated(0.06) possibly_damaging(0.791) TCGA-CJ-4907-01 5 80600797 80600797 G T ZCCHC9 Missense_Mutation p.G74V 0.17 deleterious(0) probably_damaging(0.996) TCGA-CJ-4907-01 6 132967028 132967028 C T TAAR1 Missense_Mutation p.V39I 0.07 tolerated(0.5) benign(0.003) TCGA-CJ-4907-01 6 154743778 154743778 C T CNKSR3 Nonsense_Mutation p.W269* 0.16 TCGA-CJ-4907-01 6 15627643 15627643 C A DTNBP1 Nonsense_Mutation p.E96* 0.15 TCGA-CJ-4907-01 6 161513128 161513128 G T MAP3K4 Missense_Mutation p.M1074I 0.16 tolerated(0.1) probably_damaging(0.989) TCGA-CJ-4907-01 6 32095464 32095464 G C ATF6B Missense_Mutation p.P52R 0.09 deleterious(0.03) benign(0.155) TCGA-CJ-4907-01 7 133848194 133848198 GCCCT - LRGUK Frame_Shift_Del p.L282Efs*19 0.22 TCGA-CJ-4907-01 7 135080392 135080392 T C CNOT4 Missense_Mutation p.T375A 0.25 tolerated(0.1) benign(0.002) TCGA-CJ-4907-01 7 157049683 157049683 G A UBE3C Missense_Mutation p.R1009H 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-CJ-4907-01 7 48556330 48556330 T A ABCA13 Silent p.T4550T 0.13 TCGA-CJ-4907-01 7 99474267 99474267 C T OR2AE1 Silent p.L130L 0.05 TCGA-CJ-4907-01 8 101719135 101719135 A T PABPC1 Missense_Mutation p.V476D 0.17 tolerated(0.17) benign(0.042) TCGA-CJ-4907-01 8 125565825 125565825 C T MTSS1 Missense_Mutation p.R559Q 0.14 deleterious(0.03) probably_damaging(0.99) TCGA-CJ-4907-01 8 3216686 3216686 G A CSMD1 Missense_Mutation p.P1098S 0.05 probably_damaging(0.999) TCGA-CJ-4907-01 8 87060713 87060713 G T PSKH2 Nonsense_Mutation p.S379* 0.14 TCGA-CJ-4907-01 9 124936889 124936889 G A MORN5 Missense_Mutation p.R141H 0.08 tolerated(0.06) benign(0.015) TCGA-CJ-4907-01 9 133911651 133911651 G A LAMC3 Missense_Mutation p.R303H 0.14 tolerated(0.07) benign(0.224) TCGA-CJ-4907-01 9 84548104 84548104 A T RP11-383M4.6 Intron 0.07 TCGA-CJ-4907-01 X 54585053 54585053 C T GNL3L Missense_Mutation p.A544V 0.23 deleterious(0) probably_damaging(0.958) TCGA-CJ-4908-01 10 105942200 105942200 G T WDR96 Missense_Mutation p.A738D 0.20 tolerated(0.11) benign(0.02) TCGA-CJ-4908-01 10 115618352 115618352 G A NHLRC2 Missense_Mutation p.V82I 0.03 tolerated(0.29) benign(0.078) TCGA-CJ-4908-01 10 16882524 16882524 A G CUBN Silent p.G3279G 0.26 TCGA-CJ-4908-01 11 10647673 10647673 C A MRVI1 Missense_Mutation p.G403V 0.09 deleterious(0) possibly_damaging(0.885) TCGA-CJ-4908-01 11 108810996 108810996 T C DDX10 Missense_Mutation p.M825T 0.10 tolerated(0.74) benign(0.001) TCGA-CJ-4908-01 11 110462785 110462785 C T ARHGAP20 Silent p.S353S 0.06 TCGA-CJ-4908-01 11 47264856 47264856 C G ACP2 Missense_Mutation p.Q263H 0.06 tolerated(0.25) benign(0.05) TCGA-CJ-4908-01 11 6262833 6262833 C A CNGA4 Missense_Mutation p.L364M 0.17 deleterious(0) probably_damaging(0.999) TCGA-CJ-4908-01 11 67050628 67050628 T C ADRBK1 Silent p.P419P 0.24 TCGA-CJ-4908-01 12 49047945 49047945 A C KANSL2 Missense_Mutation p.M454R 0.11 tolerated_low_confidence(0.22) benign(0.045) TCGA-CJ-4908-01 15 41107825 41107825 C A PPP1R14D 3'UTR 0.22 TCGA-CJ-4908-01 16 2328063 2328063 C T ABCA3 Missense_Mutation p.E1576K 0.12 deleterious(0) probably_damaging(0.957) TCGA-CJ-4908-01 17 27023953 27023953 T C SUPT6H Silent p.D1354D 0.25 TCGA-CJ-4908-01 17 35581913 35581913 C T ACACA Silent p.Q1158Q 0.22 TCGA-CJ-4908-01 17 44248412 44248412 T C KANSL1 Silent p.G366G 0.14 TCGA-CJ-4908-01 17 45918176 45918176 A T SCRN2 Missense_Mutation p.C12S 0.14 deleterious(0) benign(0.035) TCGA-CJ-4908-01 17 74673741 74673741 C G MXRA7 Missense_Mutation p.D182H 0.20 probably_damaging(0.971) TCGA-CJ-4908-01 19 19746368 19746368 G A GMIP Silent p.D472D 0.04 TCGA-CJ-4908-01 19 6270745 6270745 A T MLLT1 Missense_Mutation p.L13Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-CJ-4908-01 1 111494480 111494480 A T LRIF1 Silent p.P342P 0.22 TCGA-CJ-4908-01 1 114430017 114430018 - T BCL2L15 5'UTR 0.24 TCGA-CJ-4908-01 1 169388196 169388196 A G CCDC181 Intron 0.16 TCGA-CJ-4908-01 1 201190737 201190737 C A IGFN1 Missense_Mutation p.T3355N 0.17 probably_damaging(0.974) TCGA-CJ-4908-01 1 35457966 35457966 A T ZMYM6 Missense_Mutation p.M672K 0.26 tolerated(0.23) benign(0.021) TCGA-CJ-4908-01 20 33500951 33500951 G T ACSS2 Missense_Mutation p.V143F 0.20 deleterious(0.04) benign(0.094) TCGA-CJ-4908-01 21 26960039 26960039 C - MRPL39 Frame_Shift_Del p.Y345Tfs*11 0.15 TCGA-CJ-4908-01 21 46912469 46912469 G A COL18A1 Silent p.P906P 0.16 TCGA-CJ-4908-01 3 10188297 10188297 T - VHL Frame_Shift_Del p.F148Lfs*11 0.27 TCGA-CJ-4908-01 3 12544895 12544895 A C TSEN2 Missense_Mutation p.Q148P 0.09 tolerated(0.33) benign(0.001) TCGA-CJ-4908-01 3 52661377 52661377 T A PBRM1 Nonsense_Mutation p.K485* 0.27 TCGA-CJ-4908-01 3 56779390 56779390 A G ARHGEF3 Missense_Mutation p.L270P 0.28 deleterious(0) probably_damaging(0.999) TCGA-CJ-4908-01 3 57139906 57139906 G T IL17RD Missense_Mutation p.F242L 0.07 tolerated(0.19) probably_damaging(0.995) TCGA-CJ-4908-01 4 1807850 1807850 G T FGFR3 Missense_Mutation p.G639W 0.23 deleterious(0) probably_damaging(1) TCGA-CJ-4908-01 5 56778275 56778275 C A ACTBL2 Missense_Mutation p.W87L 0.20 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-CJ-4908-01 6 28097728 28097729 AT - ZSCAN16 Missense_Mutation 0.18 TCGA-CJ-4908-01 6 31922556 31922556 C G NELFE Missense_Mutation p.R173P 0.27 tolerated_low_confidence(0.07) possibly_damaging(0.839) TCGA-CJ-4908-01 6 88210968 88210968 T C SLC35A1 Silent p.F149F 0.25 TCGA-CJ-4908-01 7 135292022 135292022 T - NUP205 Frame_Shift_Del p.H1034Tfs*4 0.17 TCGA-CJ-4908-01 8 145649316 145649316 A C VPS28 Missense_Mutation p.L219R 0.20 deleterious_low_confidence(0) benign(0.193) TCGA-CJ-4908-01 9 119568087 119568087 C G ASTN2 Missense_Mutation p.E689D 0.03 tolerated(1) unknown(0) TCGA-CJ-4908-01 9 92008488 92008488 G A SEMA4D Missense_Mutation p.S166F 0.19 deleterious(0) probably_damaging(0.967) TCGA-CJ-4908-01 X 107319363 107319363 A T VSIG1 Missense_Mutation p.I285F 0.43 deleterious(0.03) probably_damaging(0.944) TCGA-CJ-4912-01 10 104126846 104126846 G C GBF1 Missense_Mutation p.C812S 0.17 tolerated(0.92) benign(0.006) TCGA-CJ-4912-01 10 121657969 121657969 G C SEC23IP Missense_Mutation p.S65T 0.16 deleterious(0) probably_damaging(0.998) TCGA-CJ-4912-01 10 134942620 134942620 C G GPR123 Missense_Mutation p.P430A 0.50 tolerated(0.74) benign(0.002) TCGA-CJ-4912-01 10 25145923 25145923 T G PRTFDC1 Missense_Mutation p.D142A 0.31 tolerated(0.14) benign(0.013) TCGA-CJ-4912-01 11 110450017 110450017 C A ARHGAP20 3'UTR 0.15 TCGA-CJ-4912-01 11 118133279 118133279 A G MPZL2 Missense_Mutation p.Y104H 0.34 tolerated(0.33) benign(0.018) TCGA-CJ-4912-01 11 118370617 118370617 T A KMT2A Silent p.P2049P 0.30 TCGA-CJ-4912-01 11 121986687 121986687 G A BLID 5'UTR 0.07 TCGA-CJ-4912-01 11 26718743 26718743 A G SLC5A12 Silent p.L336L 0.25 TCGA-CJ-4912-01 11 47827752 47827752 A C NUP160 Missense_Mutation p.N853K 0.28 tolerated(0.35) benign(0.392) TCGA-CJ-4912-01 11 57457522 57457522 C T ZDHHC5 Missense_Mutation p.P135L 0.29 deleterious(0) possibly_damaging(0.891) TCGA-CJ-4912-01 11 6953811 6953811 A C ZNF215 Missense_Mutation p.E103A 0.27 deleterious(0) possibly_damaging(0.735) TCGA-CJ-4912-01 11 70338536 70338536 G T SHANK2 Silent p.P782P 0.10 TCGA-CJ-4912-01 12 11545831 11545831 G C PRB2 Missense_Mutation p.P394R 0.32 deleterious_low_confidence(0) unknown(0) TCGA-CJ-4912-01 12 12629998 12629998 A T DUSP16 Silent p.T589T 0.19 TCGA-CJ-4912-01 12 2983386 2983386 T A FOXM1 Missense_Mutation p.I87F 0.23 deleterious(0) probably_damaging(0.991) TCGA-CJ-4912-01 12 936351 936351 G C WNK1 Missense_Mutation p.G359A 0.19 deleterious(0) unknown(0) TCGA-CJ-4912-01 13 107209856 107209856 C T ARGLU1 Intron 0.15 TCGA-CJ-4912-01 13 38266299 38266299 C T TRPC4 Silent p.L357L 0.21 TCGA-CJ-4912-01 13 42293563 42293563 A C VWA8 Intron 0.31 TCGA-CJ-4912-01 13 50489191 50489191 A G SPRYD7 3'UTR 0.19 TCGA-CJ-4912-01 13 79940847 79940847 A C RBM26 Missense_Mutation p.I352M 0.47 tolerated(0.22) possibly_damaging(0.52) TCGA-CJ-4912-01 14 74009978 74041836 14:74009978-74041836 - ACOT2 large deletion 0.28 TCGA-CJ-4912-01 15 83657726 83657727 - T C15orf40 3'Flank 0.24 TCGA-CJ-4912-01 15 90276288 90276288 T A WDR93 Missense_Mutation p.I461N 0.32 deleterious(0) possibly_damaging(0.812) TCGA-CJ-4912-01 16 2549923 2549923 G A TBC1D24 Missense_Mutation p.V432M 0.24 deleterious(0) probably_damaging(0.971) TCGA-CJ-4912-01 16 67261756 67261756 C T TMEM208 Silent p.G8G 0.15 TCGA-CJ-4912-01 16 76495979 76495979 C T CNTNAP4 Missense_Mutation p.S414L 0.24 tolerated(0.08) benign(0.027) TCGA-CJ-4912-01 16 85100597 85100597 C G KIAA0513 5'UTR 0.31 TCGA-CJ-4912-01 17 1617206 1617206 C A TLCD2 5'Flank 0.27 TCGA-CJ-4912-01 17 79478982 79478982 G C ACTG1 Missense_Mutation p.L104V 0.08 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-CJ-4912-01 18 28972163 28972163 C T DSG4 Nonsense_Mutation p.R289* 0.27 TCGA-CJ-4912-01 18 43212331 43212331 G T SLC14A2 Nonsense_Mutation p.G180* 0.28 TCGA-CJ-4912-01 19 14755050 14755050 C T EMR3 Nonsense_Mutation p.W307* 0.32 TCGA-CJ-4912-01 19 21719682 21719682 A C ZNF429 Missense_Mutation p.K276T 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-CJ-4912-01 19 31767620 31767620 T C TSHZ3 Missense_Mutation p.K1027E 0.24 tolerated(0.07) benign(0.4) TCGA-CJ-4912-01 19 36230813 36230813 C T IGFLR1 Silent p.L173L 0.28 TCGA-CJ-4912-01 19 38876071 38876071 C T GGN Missense_Mutation p.V611I 0.26 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-CJ-4912-01 19 51525739 51525739 T G KLK11 3'UTR 0.32 TCGA-CJ-4912-01 19 57835116 57835116 G A ZNF543 Missense_Mutation p.A29T 0.07 tolerated(0.37) benign(0.012) TCGA-CJ-4912-01 19 9578075 9578075 A C ZNF560 Missense_Mutation p.F516L 0.24 deleterious(0.01) possibly_damaging(0.787) TCGA-CJ-4912-01 1 120468210 120468210 C T NOTCH2 Missense_Mutation p.R1410H 0.31 tolerated(0.57) benign(0) TCGA-CJ-4912-01 1 148252088 148252088 C - NBPF20 Frame_Shift_Del p.E4551Dfs*54 0.23 TCGA-CJ-4912-01 1 173934019 173934019 A G RC3H1 Missense_Mutation p.I525T 0.37 tolerated(0.48) benign(0.001) TCGA-CJ-4912-01 1 182544563 182544563 A G RNASEL Silent p.A730A 0.30 TCGA-CJ-4912-01 1 215799083 215799083 A T USH2A 3'UTR 0.28 TCGA-CJ-4912-01 1 27107213 27107213 T C ARID1A Missense_Mutation p.I2275T 0.29 probably_damaging(0.936) TCGA-CJ-4912-01 1 27440753 27440753 G C SLC9A1 Nonsense_Mutation p.S126* 0.12 TCGA-CJ-4912-01 1 34052715 34052715 C T CSMD2 Missense_Mutation p.V2306I 0.28 tolerated(0.47) benign(0.004) TCGA-CJ-4912-01 1 35580008 35580008 C A ZMYM1 Silent p.V859V 0.21 TCGA-CJ-4912-01 1 6655551 6655551 C T KLHL21 Missense_Mutation p.M498I 0.23 deleterious(0.02) possibly_damaging(0.901) TCGA-CJ-4912-01 1 94048304 94048304 T C BCAR3 Missense_Mutation p.K414E 0.35 tolerated(0.61) benign(0.101) TCGA-CJ-4912-01 1 94048425 94048425 G T BCAR3 Silent p.A373A 0.28 TCGA-CJ-4912-01 1 9809930 9809930 G T CLSTN1 Missense_Mutation p.H231N 0.21 deleterious(0.03) benign(0.155) TCGA-CJ-4912-01 20 13845886 13845886 T G SEL1L2 Missense_Mutation p.K469T 0.06 tolerated_low_confidence(0.07) benign(0.001) TCGA-CJ-4912-01 20 30784502 30784502 G A PLAGL2 Missense_Mutation p.S415F 0.38 deleterious(0) probably_damaging(0.962) TCGA-CJ-4912-01 22 18070862 18070862 C T SLC25A18 Intron 0.10 TCGA-CJ-4912-01 22 30766638 30766638 C G CCDC157 Silent p.P248P 0.36 TCGA-CJ-4912-01 22 40662303 40662303 A C TNRC6B Missense_Mutation p.K690T 0.25 tolerated(0.13) probably_damaging(0.997) TCGA-CJ-4912-01 2 139326739 139326739 G - SPOPL 3'UTR 0.31 TCGA-CJ-4912-01 2 163236424 163236424 T G KCNH7 Missense_Mutation p.S1024R 0.30 tolerated(0.24) possibly_damaging(0.51) TCGA-CJ-4912-01 2 179427281 179427281 C G TTN Missense_Mutation p.V27860L 0.31 TCGA-CJ-4912-01 2 219127645 219127645 G T GPBAR1 Silent p.L66L 0.34 TCGA-CJ-4912-01 2 241514017 241514017 C T RNPEPL1 Silent p.V189V 0.20 TCGA-CJ-4912-01 2 27307380 27307380 G C EMILIN1 Missense_Mutation p.E846D 0.28 benign(0.051) TCGA-CJ-4912-01 2 27424293 27424293 A G SLC5A6 Silent p.L525L 0.04 TCGA-CJ-4912-01 3 10188204 10188204 T - VHL Frame_Shift_Del p.W117Gfs*42 0.45 TCGA-CJ-4912-01 3 170893117 170893117 G A TNIK Missense_Mutation p.L233F 0.40 deleterious(0.01) unknown(0) TCGA-CJ-4912-01 3 196387275 196387275 C T NRROS Missense_Mutation p.T254M 0.13 tolerated(0.25) benign(0.073) TCGA-CJ-4912-01 3 52621512 52621515 ACAA - PBRM1 Intron 0.62 TCGA-CJ-4912-01 3 68802104 68802104 G A FAM19A4 Missense_Mutation p.R66C 0.11 deleterious(0) probably_damaging(0.927) TCGA-CJ-4912-01 3 9809372 9809383 TCGTAGATGTCT - CAMK1 In_Frame_Del p.R17_D21delinsS 0.58 TCGA-CJ-4912-01 4 102751087 102751087 T A BANK1 Missense_Mutation p.F65I 0.28 tolerated(0.29) benign(0.032) TCGA-CJ-4912-01 4 104000886 104000886 G T BDH2 Silent p.V237V 0.41 TCGA-CJ-4912-01 4 85664902 85664902 G A WDFY3 Silent p.Y2008Y 0.32 TCGA-CJ-4912-01 5 131930637 131930637 A G RAD50 Missense_Mutation p.S624G 0.51 tolerated(0.48) benign(0.001) TCGA-CJ-4912-01 5 148207220 148207220 G C ADRB2 Missense_Mutation p.G276R 0.08 deleterious(0) probably_damaging(0.999) TCGA-CJ-4912-01 5 16711272 16711272 G C MYO10 Missense_Mutation p.A671G 0.23 deleterious(0) probably_damaging(0.996) TCGA-CJ-4912-01 5 176562309 176562309 T C NSD1 Missense_Mutation p.Y69H 0.45 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CJ-4912-01 5 177574549 177574549 T - RMND5B Frame_Shift_Del p.C292Wfs*7 0.43 TCGA-CJ-4912-01 5 41065513 41065513 T G MROH2B Missense_Mutation p.E94A 0.24 deleterious(0) possibly_damaging(0.882) TCGA-CJ-4912-01 5 61779118 61779118 A C IPO11 Missense_Mutation p.E380A 0.23 deleterious(0.01) benign(0.392) TCGA-CJ-4912-01 5 70945080 70945080 G A MCCC2 Missense_Mutation p.S458N 0.33 tolerated_low_confidence(0.09) benign(0.35) TCGA-CJ-4912-01 6 10907856 10907856 G C SYCP2L Missense_Mutation p.W253S 0.15 deleterious(0) probably_damaging(0.992) TCGA-CJ-4912-01 6 131540937 131540937 C A AKAP7 Missense_Mutation p.S280Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-CJ-4912-01 6 136562720 136562720 C G MTFR2 Missense_Mutation p.E126Q 0.27 tolerated(0.14) benign(0.102) TCGA-CJ-4912-01 6 160471666 160471666 C T IGF2R Silent p.V892V 0.38 TCGA-CJ-4912-01 6 54805594 54805594 C T FAM83B Missense_Mutation p.P609S 0.28 tolerated(0.07) benign(0.004) TCGA-CJ-4912-01 6 87969169 87969169 A C ZNF292 Missense_Mutation p.Q1941P 0.26 tolerated(0.24) probably_damaging(0.998) TCGA-CJ-4912-01 7 127961369 127961369 T A RBM28 Nonsense_Mutation p.K505* 0.15 TCGA-CJ-4912-01 7 138333763 138333763 G T SVOPL Silent p.A218A 0.10 TCGA-CJ-4912-01 7 138944050 138944050 A G UBN2 Missense_Mutation p.K280R 0.28 deleterious(0.03) benign(0.142) TCGA-CJ-4912-01 7 148454216 148454216 C T CUL1 Nonsense_Mutation p.R153* 0.14 TCGA-CJ-4912-01 7 56007482 56007482 G A ZNF713 Missense_Mutation p.C359Y 0.26 deleterious(0) probably_damaging(1) TCGA-CJ-4912-01 7 94050324 94050324 C A COL1A2 Missense_Mutation p.P767T 0.21 unknown(0) TCGA-CJ-4912-01 7 97766647 97766647 G A LMTK2 Missense_Mutation p.E42K 0.69 deleterious(0) probably_damaging(0.94) TCGA-CJ-4912-01 8 67484765 67484765 C A MYBL1 Missense_Mutation p.K560N 0.61 deleterious(0) probably_damaging(1) TCGA-CJ-4912-01 8 68111271 68111271 A G ARFGEF1 Silent p.I1816I 0.18 TCGA-CJ-4912-01 9 125782628 125782628 T C RABGAP1 Silent p.L562L 0.35 TCGA-CJ-4912-01 9 32630111 32630111 C A TAF1L Missense_Mutation p.G1823W 0.06 benign(0.003) TCGA-CJ-4912-01 9 732501 732501 T C KANK1 Silent p.T1043T 0.44 TCGA-CJ-4912-01 X 43571993 43571993 A G MAOA Silent p.K151K 0.55 TCGA-CJ-4913-01 10 134261287 134261287 C T C10orf91 Silent p.L54L 0.11 TCGA-CJ-4913-01 10 32635831 32635831 A G EPC1 Missense_Mutation p.S5P 0.08 deleterious(0) probably_damaging(0.997) TCGA-CJ-4913-01 10 75675037 75675037 A T PLAU Missense_Mutation p.K333N 0.10 deleterious(0.01) probably_damaging(1) TCGA-CJ-4913-01 11 112039968 112039968 C T TEX12 Intron 0.12 TCGA-CJ-4913-01 11 18738373 18738373 G A IGSF22 Missense_Mutation p.T383M 0.07 tolerated(0.1) probably_damaging(1) TCGA-CJ-4913-01 11 1908746 1908746 C T LSP1 Missense_Mutation p.H453Y 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CJ-4913-01 11 55735328 55735328 C A OR10AG1 Missense_Mutation p.L204F 0.19 deleterious(0.02) possibly_damaging(0.684) TCGA-CJ-4913-01 11 59224931 59224931 C A OR4D6 Missense_Mutation p.F166L 0.06 tolerated(1) benign(0) TCGA-CJ-4913-01 11 65484261 65484261 G T KAT5 Missense_Mutation p.V385L 0.04 deleterious(0.03) probably_damaging(0.99) TCGA-CJ-4913-01 12 120966769 120966769 A T COQ5 Missense_Mutation p.V59E 0.15 deleterious(0) probably_damaging(0.998) TCGA-CJ-4913-01 12 19593226 19593226 C A AEBP2 Missense_Mutation p.A198E 0.29 tolerated_low_confidence(0.09) unknown(0) TCGA-CJ-4913-01 12 21331930 21331930 G A SLCO1B1 Missense_Mutation p.V235M 0.18 deleterious(0) probably_damaging(0.999) TCGA-CJ-4913-01 12 54856955 54856957 CAA - GTSF1 In_Frame_Del p.V82del 0.20 TCGA-CJ-4913-01 12 57007904 57007904 T C BAZ2A Missense_Mutation p.Y252C 0.10 deleterious(0) probably_damaging(0.998) TCGA-CJ-4913-01 12 63543859 63543859 G T AVPR1A Nonsense_Mutation p.S253* 0.17 TCGA-CJ-4913-01 13 25744223 25744223 T C AMER2 Missense_Mutation p.E512G 0.18 deleterious(0) probably_damaging(0.999) TCGA-CJ-4913-01 13 41134652 41134652 C G FOXO1 Missense_Mutation p.G326R 0.08 deleterious(0) probably_damaging(0.999) TCGA-CJ-4913-01 14 24035666 24035666 G C AP1G2 Intron 0.10 TCGA-CJ-4913-01 14 28734092 28734092 G A BNIP3P1 RNA 0.05 TCGA-CJ-4913-01 14 65569055 65569055 C A MAX Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CJ-4913-01 14 94088412 94088412 C A UNC79 Silent p.S1434S 0.18 TCGA-CJ-4913-01 14 94964360 94964360 C A SERPINA12 Missense_Mutation p.Q125H 0.30 tolerated(0.14) possibly_damaging(0.583) TCGA-CJ-4913-01 15 31220813 31220813 T G FAN1 Missense_Mutation p.I849S 0.06 deleterious(0) benign(0.118) TCGA-CJ-4913-01 15 43281101 43281101 C A UBR1 Nonsense_Mutation p.G1305* 0.16 TCGA-CJ-4913-01 15 48936936 48936936 G - FBN1 Frame_Shift_Del p.L11Wfs*7 0.38 TCGA-CJ-4913-01 15 52539694 52539694 C G MYO5C Missense_Mutation p.K614N 0.29 tolerated(0.07) possibly_damaging(0.892) TCGA-CJ-4913-01 15 78778167 78778167 A G IREB2 Missense_Mutation p.Y565C 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-CJ-4913-01 15 86311567 86311567 C A KLHL25 Missense_Mutation p.S492I 0.10 deleterious(0) probably_damaging(0.998) TCGA-CJ-4913-01 16 28993800 28993800 C T SPNS1 Silent p.L363L 0.34 TCGA-CJ-4913-01 16 30774777 30774777 G T RNF40 Missense_Mutation p.E113D 0.16 tolerated(1) benign(0.003) TCGA-CJ-4913-01 17 72613272 72613272 C T CD300E Missense_Mutation p.V125M 0.09 deleterious(0) probably_damaging(0.988) TCGA-CJ-4913-01 17 79027521 79027521 G A BAIAP2 Silent p.K36K 0.08 TCGA-CJ-4913-01 18 18629104 18629105 - A ROCK1 Frame_Shift_Ins p.W122Lfs*25 0.22 TCGA-CJ-4913-01 18 60646514 60646514 G A PHLPP1 Silent p.P1668P 0.22 TCGA-CJ-4913-01 19 1054031 1054031 A T ABCA7 Missense_Mutation p.T1167S 0.21 tolerated(1) benign(0.001) TCGA-CJ-4913-01 19 21910711 21910712 - T ZNF100 Frame_Shift_Ins p.Y135Ifs*7 0.16 TCGA-CJ-4913-01 19 50918766 50918766 C A POLD1 Missense_Mutation p.S879Y 0.38 deleterious(0) probably_damaging(0.995) TCGA-CJ-4913-01 19 57325907 57325907 T G PEG3 Silent p.V1301V 0.32 TCGA-CJ-4913-01 19 58213740 58213740 C G ZNF154 Missense_Mutation p.E193Q 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-CJ-4913-01 19 59065512 59065512 T C CHMP2A Missense_Mutation p.N23S 0.04 tolerated(0.11) benign(0.038) TCGA-CJ-4913-01 19 7997527 7997527 G A TIMM44 Silent p.I324I 0.05 TCGA-CJ-4913-01 1 10477169 10477169 C A PGD Silent p.R324R 0.22 TCGA-CJ-4913-01 1 11188164 11188164 G C MTOR Missense_Mutation p.T1977R 0.06 deleterious(0) probably_damaging(0.991) TCGA-CJ-4913-01 1 22310726 22310726 G A CELA3B Missense_Mutation p.V182M 0.08 deleterious(0.01) possibly_damaging(0.768) TCGA-CJ-4913-01 1 229730773 229730773 G C TAF5L Missense_Mutation p.S347R 0.18 tolerated(0.34) benign(0.01) TCGA-CJ-4913-01 1 6246851 6246852 - T RPL22 Frame_Shift_Ins p.Y90Ifs*6 0.25 TCGA-CJ-4913-01 1 67292538 67292538 C T WDR78 Silent p.E768E 0.07 TCGA-CJ-4913-01 1 75708659 75708659 T C SLC44A5 Missense_Mutation p.Y128C 0.11 deleterious(0.01) probably_damaging(0.971) TCGA-CJ-4913-01 20 9520102 9520102 C T PAK7 3'UTR 0.08 TCGA-CJ-4913-01 2 241516160 241516160 G A RNPEPL1 Silent p.L342L 0.28 TCGA-CJ-4913-01 2 29416082 29416082 G T ALK 3'UTR 0.26 TCGA-CJ-4913-01 2 95780928 95780928 T C MRPS5 Missense_Mutation p.T54A 0.12 tolerated(0.25) benign(0.001) TCGA-CJ-4913-01 3 115439677 115439677 G C GAP43 Missense_Mutation p.R258P 0.04 deleterious(0.01) possibly_damaging(0.664) TCGA-CJ-4913-01 3 141692908 141692908 C G TFDP2 Missense_Mutation p.Q215H 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-CJ-4913-01 3 48612153 48612153 C A COL7A1 Missense_Mutation p.G2117V 0.08 unknown(0) TCGA-CJ-4913-01 3 52610608 52610609 - T PBRM1 Frame_Shift_Ins p.E1189Rfs*6 0.27 TCGA-CJ-4913-01 3 52621446 52621446 C A PBRM1 Nonsense_Mutation p.E991* 0.19 TCGA-CJ-4913-01 4 4389419 4389419 C G NSG1 Silent p.G21G 0.14 TCGA-CJ-4913-01 5 108521914 108521914 A G FER Silent p.S739S 0.07 TCGA-CJ-4913-01 5 147778625 147778625 G A FBXO38 Silent p.V64V 0.17 TCGA-CJ-4913-01 6 27420021 27420021 A G ZNF184 Silent p.T439T 0.05 TCGA-CJ-4913-01 6 29323588 29323588 G A OR5V1 Missense_Mutation p.P129S 0.09 deleterious(0) probably_damaging(1) TCGA-CJ-4913-01 6 31686821 31686821 G A LY6G6C 3'UTR 0.18 TCGA-CJ-4913-01 6 33289504 33289504 A T DAXX Missense_Mutation p.F67I 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-CJ-4913-01 6 90647879 90647879 C T BACH2 Missense_Mutation p.C676Y 0.09 tolerated(0.15) probably_damaging(0.99) TCGA-CJ-4913-01 7 100395076 100395076 G A ZAN Silent p.T2693T 0.09 TCGA-CJ-4913-01 7 100778823 100778823 G A SERPINE1 Silent p.L316L 0.07 TCGA-CJ-4913-01 7 121651006 121651006 T A PTPRZ1 Missense_Mutation p.S636T 0.29 tolerated_low_confidence(0.28) benign(0.219) TCGA-CJ-4913-01 7 121651023 121651023 A T PTPRZ1 Missense_Mutation p.E641D 0.29 tolerated_low_confidence(0.31) benign(0.015) TCGA-CJ-4913-01 7 143000899 143000899 C A CASP2 Missense_Mutation p.D330E 0.15 tolerated(0.32) possibly_damaging(0.509) TCGA-CJ-4913-01 7 94164833 94164833 A C CASD1 Missense_Mutation p.T281P 0.06 tolerated(0.2) possibly_damaging(0.828) TCGA-CJ-4913-01 8 110576864 110576864 G C EBAG9 3'UTR 0.07 TCGA-CJ-4913-01 8 28209116 28209116 A T ZNF395 Missense_Mutation p.S377T 0.25 tolerated(0.65) benign(0.01) TCGA-CJ-4913-01 8 6612685 6612685 A G AGPAT5 Missense_Mutation p.I287V 0.10 tolerated(0.3) benign(0.002) TCGA-CJ-4913-01 9 139369367 139369367 T A SEC16A Missense_Mutation p.S901C 0.16 tolerated(0.05) possibly_damaging(0.794) TCGA-CJ-4913-01 9 6014830 6014830 C T RANBP6 Missense_Mutation p.G260S 0.18 deleterious(0) benign(0.039) TCGA-CJ-4913-01 X 128962964 128962964 C T ZDHHC9 Missense_Mutation p.M107I 0.15 tolerated(0.08) probably_damaging(0.977) TCGA-CJ-4913-01 X 132352095 132352095 G A TFDP3 Missense_Mutation p.P65S 0.11 tolerated(0.26) benign(0.1) TCGA-CJ-4913-01 X 55650703 55650703 G C FOXR2 Missense_Mutation p.E187Q 0.16 tolerated(0.16) benign(0.129) TCGA-CJ-4913-01 X 84634493 84634493 T A POF1B 5'UTR 0.23 TCGA-CJ-4916-01 10 58120095 58120095 C G ZWINT Missense_Mutation p.E31Q 0.15 deleterious(0) probably_damaging(0.986) TCGA-CJ-4916-01 10 93784657 93784657 C T BTAF1 Missense_Mutation p.P1670S 0.22 deleterious(0.04) probably_damaging(0.967) TCGA-CJ-4916-01 10 98945307 98945307 C G SLIT1 Missense_Mutation p.G42A 0.22 tolerated(0.23) probably_damaging(1) TCGA-CJ-4916-01 11 57087711 57087711 G A TNKS1BP1 Silent p.N190N 0.18 TCGA-CJ-4916-01 11 58477917 58477917 A G GLYAT Intron 0.17 TCGA-CJ-4916-01 11 62284360 62284360 A T AHNAK Missense_Mutation p.D5843E 0.05 benign(0.138) TCGA-CJ-4916-01 11 6661620 6661620 C T DCHS1 Missense_Mutation p.E409K 0.18 deleterious(0.01) possibly_damaging(0.689) TCGA-CJ-4916-01 12 109702175 109702175 A G ACACB Missense_Mutation p.E2309G 0.19 tolerated(0.05) probably_damaging(0.913) TCGA-CJ-4916-01 12 123471023 123471023 A G PITPNM2 Missense_Mutation p.I1229T 0.50 deleterious(0) probably_damaging(0.997) TCGA-CJ-4916-01 12 124270368 124270368 T A DNAH10 Missense_Mutation p.W375R 0.22 probably_damaging(1) TCGA-CJ-4916-01 12 1702196 1702196 T C FBXL14 Missense_Mutation p.K346R 0.21 tolerated(0.34) benign(0.012) TCGA-CJ-4916-01 12 46754875 46754875 T G SLC38A2 3'UTR 0.14 TCGA-CJ-4916-01 14 45433179 45433179 C G FAM179B Missense_Mutation p.L519V 0.26 deleterious(0) probably_damaging(0.999) TCGA-CJ-4916-01 14 56757051 56757051 G T PELI2 Silent p.L191L 0.20 TCGA-CJ-4916-01 14 56757052 56757052 G T PELI2 Missense_Mutation p.V192L 0.20 tolerated(0.33) possibly_damaging(0.728) TCGA-CJ-4916-01 14 77767444 77767445 - G POMT2 Frame_Shift_Ins p.S269Qfs*39 0.23 TCGA-CJ-4916-01 15 45695510 45695510 C T SPATA5L1 Missense_Mutation p.R295C 0.21 deleterious(0.04) benign(0.013) TCGA-CJ-4916-01 16 30581153 30581153 G A ZNF688 3'UTR 0.10 TCGA-CJ-4916-01 16 49670844 49670844 G A ZNF423 Missense_Mutation p.A740V 0.15 deleterious(0) probably_damaging(0.995) TCGA-CJ-4916-01 16 84216939 84216939 T C TAF1C Missense_Mutation p.I107V 0.18 deleterious(0) benign(0.074) TCGA-CJ-4916-01 17 34417377 34417377 C A CCL3 Missense_Mutation p.V10F 0.11 tolerated(0.19) benign(0.013) TCGA-CJ-4916-01 17 56620818 56620818 G T C17orf47 Missense_Mutation p.P244T 0.19 tolerated(0.15) benign(0.142) TCGA-CJ-4916-01 17 57232526 57232526 T C SKA2 5'UTR 0.05 TCGA-CJ-4916-01 17 72233486 72233486 G T TTYH2 Silent p.R156R 0.16 TCGA-CJ-4916-01 18 32459638 32459638 G T DTNA Missense_Mutation p.G619V 0.21 deleterious_low_confidence(0.01) benign(0.086) TCGA-CJ-4916-01 18 61600419 61600419 C T SERPINB10 Silent p.D257D 0.20 TCGA-CJ-4916-01 19 36029250 36029250 A G GAPDHS Missense_Mutation p.E96G 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.558) TCGA-CJ-4916-01 19 41727096 41727096 G C AXL Missense_Mutation p.L118F 0.19 tolerated(0.08) benign(0.26) TCGA-CJ-4916-01 19 45901534 45901534 T C PPP1R13L Missense_Mutation p.M15V 0.22 deleterious_low_confidence(0.01) benign(0.005) TCGA-CJ-4916-01 19 49564851 49564851 T C NTF4 Missense_Mutation p.Y135C 0.13 deleterious(0) probably_damaging(0.986) TCGA-CJ-4916-01 1 222794531 222794531 A C MIA3 Missense_Mutation p.D55A 0.16 deleterious(0) probably_damaging(1) TCGA-CJ-4916-01 1 248112971 248112971 A T OR2L8 Missense_Mutation p.K271M 0.13 deleterious(0.03) possibly_damaging(0.633) TCGA-CJ-4916-01 1 40362819 40362819 G T MYCL 3'UTR 0.20 TCGA-CJ-4916-01 1 71437325 71437325 A C PTGER3 Intron 0.26 TCGA-CJ-4916-01 22 36586051 36586051 C A APOL4 3'Flank 0.28 TCGA-CJ-4916-01 22 41923557 41923557 C T POLR3H 3'UTR 0.18 TCGA-CJ-4916-01 2 118766138 118766138 A G CCDC93 Silent p.L47L 0.15 TCGA-CJ-4916-01 2 187500900 187500900 G A ITGAV Silent p.R241R 0.12 TCGA-CJ-4916-01 2 217005911 217005911 G A XRCC5 Missense_Mutation p.A449T 0.21 tolerated(0.36) benign(0.017) TCGA-CJ-4916-01 2 219561786 219561786 G T STK36 Missense_Mutation p.D871Y 0.17 tolerated(0.07) benign(0.27) TCGA-CJ-4916-01 2 48066061 48066061 T C FBXO11 Missense_Mutation p.D175G 0.19 deleterious(0) possibly_damaging(0.524) TCGA-CJ-4916-01 3 100354672 100354672 T A GPR128 Splice_Site p.X199_splice 0.14 TCGA-CJ-4916-01 3 126070815 126070817 GAG - KLF15 In_Frame_Del p.L317del 0.28 TCGA-CJ-4916-01 3 183700561 183700561 C - ABCC5 Splice_Site p.X275_splice 0.21 TCGA-CJ-4916-01 3 186335070 186335070 G T AHSG Silent p.L168L 0.15 TCGA-CJ-4916-01 3 38802744 38802744 A G SCN10A Silent p.N274N 0.20 TCGA-CJ-4916-01 3 52620448 52620452 AAGTT - PBRM1 Frame_Shift_Del p.N1101Gfs*15 0.24 TCGA-CJ-4916-01 3 97614877 97614877 A T CRYBG3 Missense_Mutation p.N602I 0.21 tolerated(0.15) benign(0.003) TCGA-CJ-4916-01 4 129789065 129789065 T A JADE1 Missense_Mutation p.C520S 0.13 tolerated(0.31) benign(0.184) TCGA-CJ-4916-01 5 56777710 56777710 G A ACTBL2 Silent p.I275I 0.21 TCGA-CJ-4916-01 6 41904303 41904303 A G CCND3 Silent p.T235T 0.11 TCGA-CJ-4916-01 6 63995622 63995622 G - LGSN Frame_Shift_Del p.P67Lfs*7 0.12 TCGA-CJ-4916-01 7 116339927 116339927 G T MET Silent p.T263T 0.16 TCGA-CJ-4916-01 7 64439363 64439363 C A ZNF117 Nonsense_Mutation p.E196* 0.04 TCGA-CJ-4916-01 8 124817571 124817571 T A FAM91A1 Missense_Mutation p.L625Q 0.18 tolerated(0.6) benign(0.009) TCGA-CJ-4916-01 9 2646492 2646492 A C VLDLR Missense_Mutation p.K548T 0.18 tolerated(0.05) possibly_damaging(0.863) TCGA-CJ-4916-01 9 72933592 72933592 G A SMC5 Missense_Mutation p.E657K 0.17 tolerated(0.69) benign(0.014) TCGA-CJ-4916-01 X 100381784 100381784 G A CENPI Silent p.K258K 0.20 TCGA-CJ-4916-01 X 101382231 101382231 C A TCEAL2 Missense_Mutation p.N143K 0.22 deleterious(0.04) benign(0.154) TCGA-CJ-4916-01 X 123179154 123179154 T G STAG2 Missense_Mutation p.I201M 0.21 deleterious(0) probably_damaging(0.982) TCGA-CJ-4916-01 X 8504907 8504907 C A KAL1 Missense_Mutation p.S509I 0.24 deleterious(0.02) benign(0.152) TCGA-CJ-4918-01 10 47087494 47087494 C T NPY4R Silent p.I237I 0.05 TCGA-CJ-4918-01 10 61868693 61868693 C G ANK3 Missense_Mutation p.R1023P 0.16 probably_damaging(0.999) TCGA-CJ-4918-01 10 88230845 88230845 A T WAPAL Silent p.A682A 0.15 TCGA-CJ-4918-01 11 112064374 112064374 T C BCO2 Silent p.V157V 0.18 TCGA-CJ-4918-01 11 49830092 49830092 G T RP11-707M1.1 Intron 0.14 TCGA-CJ-4918-01 11 61135328 61135328 T C TMEM138 Intron 0.15 TCGA-CJ-4918-01 11 61545943 61545943 C T MYRF Silent p.N665N 0.11 TCGA-CJ-4918-01 11 63449001 63449001 C G RTN3 5'UTR 0.36 TCGA-CJ-4918-01 11 88300984 88300984 C A GRM5 Missense_Mutation p.A623S 0.14 tolerated(0.11) probably_damaging(0.931) TCGA-CJ-4918-01 12 113742186 113742186 G A SLC8B1 Silent p.I499I 0.12 TCGA-CJ-4918-01 12 113742187 113742187 A T SLC8B1 Missense_Mutation p.I499N 0.12 deleterious(0) possibly_damaging(0.866) TCGA-CJ-4918-01 12 113758188 113758188 G T SLC8B1 Missense_Mutation p.F214L 0.16 deleterious(0.03) benign(0.424) TCGA-CJ-4918-01 12 133233985 133233985 G T POLE Missense_Mutation p.L1137M 0.21 deleterious(0) probably_damaging(0.998) TCGA-CJ-4918-01 12 56115023 56115023 A G RDH5 Missense_Mutation p.R19G 0.15 deleterious(0) probably_damaging(0.992) TCGA-CJ-4918-01 12 58020623 58020623 G A B4GALNT1 Silent p.A502A 0.17 TCGA-CJ-4918-01 13 20797015 20797015 C A GJB6 Missense_Mutation p.C202F 0.09 deleterious(0) probably_damaging(1) TCGA-CJ-4918-01 13 44462991 44462991 C A LACC1 Missense_Mutation p.P336T 0.16 deleterious(0) probably_damaging(0.993) TCGA-CJ-4918-01 13 46577388 46577388 C T ZC3H13 Missense_Mutation p.G277E 0.16 unknown(0) TCGA-CJ-4918-01 14 101515030 101515030 T G MIR544A RNA 0.20 TCGA-CJ-4918-01 14 39782629 39782629 G A CTAGE5 Missense_Mutation p.E432K 0.15 deleterious(0.02) benign(0.251) TCGA-CJ-4918-01 14 62211422 62211422 G C HIF1A Splice_Site p.X722_splice 0.12 TCGA-CJ-4918-01 15 49429387 49429387 T C COPS2 Missense_Mutation p.K174R 0.16 tolerated(1) benign(0.014) TCGA-CJ-4918-01 15 75091783 75091783 T A CSK Missense_Mutation p.L138H 0.09 deleterious(0) probably_damaging(0.999) TCGA-CJ-4918-01 16 53495738 53495738 G T RBL2 Nonsense_Mutation p.E478* 0.16 TCGA-CJ-4918-01 16 84063144 84063144 C A SLC38A8 Missense_Mutation p.W215C 0.10 deleterious(0.01) probably_damaging(0.972) TCGA-CJ-4918-01 17 39023136 39023136 A - KRT12 Frame_Shift_Del p.F101Lfs*10 0.19 TCGA-CJ-4918-01 17 41349125 41349125 T C NBR1 Splice_Site p.X676_splice 0.22 TCGA-CJ-4918-01 17 57758814 57758814 T C CLTC Missense_Mutation p.F1075S 0.16 deleterious(0.03) probably_damaging(1) TCGA-CJ-4918-01 17 6331788 6331788 C T AIPL1 Silent p.R105R 0.17 TCGA-CJ-4918-01 18 55361849 55361849 T C ATP8B1 Missense_Mutation p.K332E 0.24 tolerated(0.05) possibly_damaging(0.528) TCGA-CJ-4918-01 19 18331077 18331077 G A PDE4C Missense_Mutation p.S254F 0.18 deleterious(0) probably_damaging(0.999) TCGA-CJ-4918-01 19 38572298 38572298 A G SIPA1L3 Silent p.T31T 0.12 TCGA-CJ-4918-01 19 4048233 4048233 C A ZBTB7A Missense_Mutation p.K424N 0.15 deleterious(0) possibly_damaging(0.688) TCGA-CJ-4918-01 19 58153167 58153167 C G ZNF211 Missense_Mutation p.S503C 0.16 deleterious(0.03) probably_damaging(0.909) TCGA-CJ-4918-01 19 58551902 58551902 A C ZSCAN1 Missense_Mutation p.E152A 0.21 deleterious(0.04) benign(0.063) TCGA-CJ-4918-01 1 154029322 154029322 C T NUP210L Missense_Mutation p.R1070K 0.20 tolerated(0.11) benign(0.033) TCGA-CJ-4918-01 1 158724679 158724687 TGACACAGT - OR6K6 In_Frame_Del p.Q27_T29del 0.16 TCGA-CJ-4918-01 1 174781011 174781011 T - RABGAP1L Frame_Shift_Del p.L752* 0.15 TCGA-CJ-4918-01 1 17990994 17990994 C A ARHGEF10L Silent p.P971P 0.07 TCGA-CJ-4918-01 1 186327744 186327744 G A TPR Silent p.N476N 0.13 TCGA-CJ-4918-01 1 205272654 205272654 C T NUAK2 Missense_Mutation p.C604Y 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.825) TCGA-CJ-4918-01 1 211545865 211545865 T A TRAF5 Missense_Mutation p.F499I 0.12 deleterious(0) probably_damaging(1) TCGA-CJ-4918-01 1 240370231 240370231 G T FMN2 Missense_Mutation p.G707C 0.12 unknown(0) TCGA-CJ-4918-01 1 29638000 29638000 C G PTPRU Missense_Mutation p.R974G 0.10 deleterious(0.01) probably_damaging(1) TCGA-CJ-4918-01 1 42660576 42660576 A - FOXJ3 Frame_Shift_Del p.S307Hfs*7 0.18 TCGA-CJ-4918-01 1 74507303 74507303 C T LRRIQ3 Missense_Mutation p.E438K 0.15 tolerated(1) benign(0.003) TCGA-CJ-4918-01 1 7998781 7998781 C A TNFRSF9 Missense_Mutation p.G70C 0.11 deleterious(0) probably_damaging(1) TCGA-CJ-4918-01 1 94057948 94057948 G A BCAR3 Silent p.F120F 0.13 TCGA-CJ-4918-01 20 10627597 10627597 G T JAG1 Nonsense_Mutation p.Y625* 0.11 TCGA-CJ-4918-01 21 19701513 19701513 C A TMPRSS15 Missense_Mutation p.G585C 0.13 deleterious(0) probably_damaging(0.999) TCGA-CJ-4918-01 2 100625302 100625302 C G AFF3 Missense_Mutation p.S74T 0.12 tolerated(0.08) possibly_damaging(0.501) TCGA-CJ-4918-01 2 115200295 115200295 T C DPP10 5'UTR 0.14 TCGA-CJ-4918-01 2 115200296 115200296 T A DPP10 5'UTR 0.12 TCGA-CJ-4918-01 2 130785949 130785949 C A FAR2P1 RNA 0.09 TCGA-CJ-4918-01 2 201437495 201437495 G T SGOL2 Missense_Mutation p.R809I 0.14 deleterious(0) probably_damaging(0.951) TCGA-CJ-4918-01 2 204591642 204591644 AAT - CD28 In_Frame_Del p.K113_I114delinsN 0.17 TCGA-CJ-4918-01 2 233349705 233349705 G C ECEL1 Missense_Mutation p.Q318E 0.20 deleterious(0.04) benign(0.136) TCGA-CJ-4918-01 2 24435589 24435589 C - ITSN2 Frame_Shift_Del p.G1340Efs*9 0.17 TCGA-CJ-4918-01 2 42472705 42472705 C A EML4 Nonsense_Mutation p.S29* 0.15 TCGA-CJ-4918-01 2 63631341 63631341 A T WDPCP Missense_Mutation p.L426Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-CJ-4918-01 2 73746997 73746997 C A ALMS1 Missense_Mutation p.T3211N 0.16 probably_damaging(0.988) TCGA-CJ-4918-01 2 99812127 99812127 T G MRPL30 Missense_Mutation p.W149G 0.14 tolerated(0.11) benign(0.003) TCGA-CJ-4918-01 3 124215189 124215189 G A KALRN Missense_Mutation p.D1620N 0.10 tolerated(0.05) possibly_damaging(0.535) TCGA-CJ-4918-01 4 100521758 100521758 C T MTTP Silent p.T368T 0.11 TCGA-CJ-4918-01 4 10089380 10089380 A - WDR1 Frame_Shift_Del p.I301Tfs*26 0.29 TCGA-CJ-4918-01 4 160273880 160273880 T A RAPGEF2 Missense_Mutation p.D1142E 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-CJ-4918-01 4 42072678 42072678 C G SLC30A9 Missense_Mutation p.T463S 0.19 tolerated(0.2) benign(0.115) TCGA-CJ-4918-01 4 79518556 79518556 C A ANXA3 Missense_Mutation p.L240M 0.12 tolerated(0.65) probably_damaging(1) TCGA-CJ-4918-01 4 85654653 85654653 T A WDFY3 Missense_Mutation p.K2368M 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-CJ-4918-01 5 113698884 113698884 G T KCNN2 Missense_Mutation p.A138S 0.19 tolerated(0.09) probably_damaging(0.956) TCGA-CJ-4918-01 5 127497486 127497486 G C SLC12A2 Missense_Mutation p.L870F 0.08 deleterious(0) benign(0.21) TCGA-CJ-4918-01 5 152873521 152873521 A G GRIA1 Missense_Mutation p.H49R 0.13 tolerated(0.11) possibly_damaging(0.848) TCGA-CJ-4918-01 6 25779371 25779371 A T SLC17A4 Silent p.A483A 0.21 TCGA-CJ-4918-01 6 34825920 34825921 AG - UHRF1BP1 Frame_Shift_Del p.E598Afs*29 0.16 TCGA-CJ-4918-01 6 3723939 3723939 G A PXDC1 Silent p.L204L 0.23 TCGA-CJ-4918-01 6 38889260 38889260 A T DNAH8 Missense_Mutation p.D3330V 0.09 benign(0.211) TCGA-CJ-4918-01 6 97587192 97587192 A C KLHL32 3'UTR 0.13 TCGA-CJ-4918-01 7 100417900 100417900 A C EPHB4 Missense_Mutation p.F276C 0.10 deleterious(0) probably_damaging(0.994) TCGA-CJ-4918-01 7 44733560 44733560 C A OGDH Missense_Mutation p.A491D 0.16 deleterious(0) probably_damaging(0.948) TCGA-CJ-4918-01 7 48008881 48008881 A - HUS1 Frame_Shift_Del p.L192* 0.11 TCGA-CJ-4918-01 7 82474757 82474757 C T PCLO Missense_Mutation p.A4626T 0.14 unknown(0) TCGA-CJ-4918-01 8 142222393 142222393 G A SLC45A4 Missense_Mutation p.A684V 0.05 tolerated_low_confidence(0.13) benign(0.012) TCGA-CJ-4918-01 8 144996079 144996079 G C PLEC Missense_Mutation p.A2774G 0.17 benign(0.09) TCGA-CJ-4918-01 9 101829277 101829277 T G COL15A1 Silent p.S1255S 0.20 TCGA-CJ-4918-01 9 123222946 123222946 C T CDK5RAP2 Splice_Site p.X703_splice 0.10 TCGA-CJ-4918-01 9 140695437 140695437 G A EHMT1 Splice_Site p.X904_splice 0.11 TCGA-CJ-4918-01 9 19550217 19550217 T A SLC24A2 Missense_Mutation p.E466V 0.17 deleterious(0.01) benign(0.01) TCGA-CJ-4918-01 9 5022145 5022145 A C JAK2 Missense_Mutation p.D53A 0.18 tolerated(0.41) benign(0.021) TCGA-CJ-4918-01 9 97823038 97823038 C T C9orf3 Silent p.P726P 0.12 TCGA-CJ-4920-01 10 102676846 102676847 AA T FAM178A Frame_Shift_Del p.K235Ifs*6 0.26 TCGA-CJ-4920-01 10 115413840 115413854 TGGGCACCAAGCATT ATGGC NRAP Frame_Shift_Del p.N131Afs*11 0.12 TCGA-CJ-4920-01 10 120920568 120920569 - T SFXN4 Frame_Shift_Ins p.L93Hfs*68 0.30 TCGA-CJ-4920-01 10 27437893 27437893 G A YME1L1 Missense_Mutation p.S37L 0.30 deleterious_low_confidence(0.02) benign(0.002) TCGA-CJ-4920-01 10 75556685 75556685 T C ZSWIM8 Missense_Mutation p.S1063P 0.35 tolerated(0.28) benign(0) TCGA-CJ-4920-01 10 86130950 86130950 A - CCSER2 Frame_Shift_Del p.S49Vfs*44 0.28 TCGA-CJ-4920-01 10 96580386 96580386 A C CYP2C19 Missense_Mutation p.E318A 0.27 deleterious(0.02) benign(0.416) TCGA-CJ-4920-01 11 103093809 103093809 T G DYNC2H1 Nonsense_Mutation p.L3116* 0.42 TCGA-CJ-4920-01 11 113230094 113230094 G T TTC12 Nonsense_Mutation p.E486* 0.25 TCGA-CJ-4920-01 11 113270032 113270032 C T ANKK1 Silent p.L447L 0.44 TCGA-CJ-4920-01 11 32955024 32955024 C T QSER1 Silent p.I611I 0.23 TCGA-CJ-4920-01 11 33565649 33565649 C - KIAA1549L Frame_Shift_Del p.S551Hfs*97 0.32 TCGA-CJ-4920-01 11 6007950 6007950 G A OR52L1 Missense_Mutation p.P71S 0.12 tolerated(0.17) benign(0.001) TCGA-CJ-4920-01 11 66282106 66282106 C T BBS1 Missense_Mutation p.P130L 0.03 tolerated(0.08) benign(0.394) TCGA-CJ-4920-01 11 93454688 93454688 G C KIAA1731 Intron 0.26 TCGA-CJ-4920-01 12 108929135 108929136 - T SART3 Frame_Shift_Ins p.R519Kfs*5 0.33 TCGA-CJ-4920-01 12 109889372 109889372 G C KCTD10 3'UTR 0.07 TCGA-CJ-4920-01 12 120954469 120954469 C T COQ5 Missense_Mutation p.E159K 0.32 tolerated(0.26) benign(0.1) TCGA-CJ-4920-01 12 131616270 131616270 G T GPR133 Missense_Mutation p.V726F 0.29 deleterious(0) possibly_damaging(0.588) TCGA-CJ-4920-01 12 51442117 51442117 C G LETMD1 5'Flank 0.02 TCGA-CJ-4920-01 12 57114669 57114669 G C NACA Missense_Mutation p.H215Q 0.30 tolerated_low_confidence(0.15) benign(0) TCGA-CJ-4920-01 12 7802168 7802168 A G APOBEC1 Missense_Mutation p.I229T 0.31 deleterious_low_confidence(0.01) benign(0.218) TCGA-CJ-4920-01 12 862733 862733 T A WNK1 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) unknown(0) TCGA-CJ-4920-01 12 9225307 9225307 G T A2M Missense_Mutation p.P1306Q 0.26 deleterious(0) possibly_damaging(0.87) TCGA-CJ-4920-01 13 101797201 101797201 A - NALCN Frame_Shift_Del p.L629Yfs*16 0.28 TCGA-CJ-4920-01 13 31729705 31729705 C G HSPH1 Missense_Mutation p.K84N 0.24 tolerated(0.23) probably_damaging(0.999) TCGA-CJ-4920-01 13 33110320 33110320 A G N4BP2L2 Intron 0.25 TCGA-CJ-4920-01 13 79177468 79177468 G A POU4F1 5'UTR 0.25 TCGA-CJ-4920-01 14 102552583 102552583 G C HSP90AA1 Missense_Mutation p.L167V 0.24 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-CJ-4920-01 14 63757822 63757822 G T RHOJ 3'UTR 0.39 TCGA-CJ-4920-01 14 77292838 77292838 C G C14orf166B 5'UTR 0.42 TCGA-CJ-4920-01 14 78184796 78184796 A G SNW1 Silent p.D442D 0.19 TCGA-CJ-4920-01 14 89202708 89202708 C G EML5 Missense_Mutation p.R350T 0.23 deleterious(0) probably_damaging(0.962) TCGA-CJ-4920-01 14 94129061 94129061 G A UNC79 Splice_Site p.X2074_splice 0.30 TCGA-CJ-4920-01 14 99640573 99640573 C T BCL11B Missense_Mutation p.S867N 0.10 deleterious(0) benign(0.123) TCGA-CJ-4920-01 15 23811293 23811293 T A MKRN3 Missense_Mutation p.S122T 0.27 tolerated(0.12) benign(0.324) TCGA-CJ-4920-01 15 41022091 41022091 A T RAD51 Missense_Mutation p.Q273L 0.34 deleterious(0.02) possibly_damaging(0.589) TCGA-CJ-4920-01 15 51514629 51514629 G A CYP19A1 Missense_Mutation p.S182L 0.32 tolerated(0.4) benign(0.003) TCGA-CJ-4920-01 15 53907894 53907895 - TTCAT WDR72 Frame_Shift_Ins p.D837Mfs*7 0.31 TCGA-CJ-4920-01 15 55971529 55971529 T - PRTG Frame_Shift_Del p.N363Mfs*19 0.26 TCGA-CJ-4920-01 16 11971401 11971401 C T GSPT1 Missense_Mutation p.V489I 0.24 tolerated(0.3) benign(0.011) TCGA-CJ-4920-01 16 31123280 31123280 C - BCKDK Frame_Shift_Del p.R344Gfs*160 0.21 TCGA-CJ-4920-01 16 336870 336870 T A PDIA2 Silent p.T486T 0.34 TCGA-CJ-4920-01 16 3487211 3487227 TGGTCACACTCAGGACA - ZNF597 Frame_Shift_Del p.C158Kfs*22 0.28 TCGA-CJ-4920-01 16 396564 396564 G A AXIN1 Silent p.G154G 0.29 TCGA-CJ-4920-01 16 56485531 56485531 G C OGFOD1 Missense_Mutation p.G3R 0.25 deleterious(0.02) possibly_damaging(0.646) TCGA-CJ-4920-01 16 68071947 68071947 T A DUS2 Silent p.S7S 0.28 TCGA-CJ-4920-01 17 15142905 15142905 T C PMP22 Missense_Mutation p.T68A 0.33 tolerated(0.06) benign(0.171) TCGA-CJ-4920-01 17 169255 169255 C T RPH3AL Missense_Mutation p.G103S 0.30 deleterious(0) probably_damaging(0.999) TCGA-CJ-4920-01 17 18333107 18333107 G C KRT17P2 RNA 0.29 TCGA-CJ-4920-01 17 4872277 4872277 C T CAMTA2 Intron 0.31 TCGA-CJ-4920-01 17 61498351 61498351 G A TANC2 Missense_Mutation p.D1670N 0.25 tolerated_low_confidence(0.09) probably_damaging(0.989) TCGA-CJ-4920-01 17 63010386 63010386 T G GNA13 Missense_Mutation p.M375L 0.26 tolerated(1) benign(0.113) TCGA-CJ-4920-01 17 73657711 73657711 A T RECQL5 Silent p.G283G 0.25 TCGA-CJ-4920-01 17 79169644 79169644 C A AZI1 Missense_Mutation p.Q669H 0.09 deleterious(0) possibly_damaging(0.844) TCGA-CJ-4920-01 18 2890714 2890714 A G EMILIN2 Missense_Mutation p.T197A 0.20 tolerated(0.05) benign(0.338) TCGA-CJ-4920-01 18 31432719 31432719 A C NOL4 3'UTR 0.11 TCGA-CJ-4920-01 18 6941968 6941968 C T LAMA1 3'UTR 0.23 TCGA-CJ-4920-01 19 19767887 19767887 C A ATP13A1 Silent p.V274V 0.31 TCGA-CJ-4920-01 19 33870405 33870405 C T CEBPG Missense_Mutation p.A87V 0.21 tolerated(0.09) benign(0.378) TCGA-CJ-4920-01 19 35501012 35501012 G T GRAMD1A Silent p.L114L 0.27 TCGA-CJ-4920-01 19 36340513 36340513 A C NPHS1 Missense_Mutation p.C217W 0.27 deleterious(0) probably_damaging(0.998) TCGA-CJ-4920-01 19 42930516 42930516 G A LIPE Silent p.F262F 0.07 TCGA-CJ-4920-01 19 48385434 48385434 A G SULT2A1 Silent p.L127L 0.27 TCGA-CJ-4920-01 19 50753042 50753042 C G MYH14 Missense_Mutation p.L540V 0.23 deleterious(0) probably_damaging(0.911) TCGA-CJ-4920-01 19 56369055 56369055 A G NLRP4 Missense_Mutation p.Y99C 0.23 deleterious(0.03) possibly_damaging(0.565) TCGA-CJ-4920-01 1 110906399 110906399 T C SLC16A4 Missense_Mutation p.S485G 0.29 tolerated_low_confidence(0.61) benign(0.007) TCGA-CJ-4920-01 1 116243998 116243998 G C CASQ2 Missense_Mutation p.A355G 0.25 tolerated(0.1) possibly_damaging(0.892) TCGA-CJ-4920-01 1 120462002 120462002 G T NOTCH2 Missense_Mutation p.A1905D 0.24 deleterious(0.02) probably_damaging(0.938) TCGA-CJ-4920-01 1 154574246 154574246 A G ADAR Missense_Mutation p.L291P 0.32 tolerated(0.28) benign(0.001) TCGA-CJ-4920-01 1 156127886 156127886 A G SEMA4A Missense_Mutation p.K109R 0.21 deleterious(0.02) probably_damaging(0.982) TCGA-CJ-4920-01 1 157105442 157105442 G A ETV3 Silent p.I35I 0.27 TCGA-CJ-4920-01 1 160151511 160151511 A T ATP1A4 Missense_Mutation p.Q925L 0.23 deleterious(0) benign(0.243) TCGA-CJ-4920-01 1 177249817 177249817 T C BRINP2 Missense_Mutation p.F502S 0.33 deleterious(0) benign(0.092) TCGA-CJ-4920-01 1 182908433 182908433 A C SHCBP1L Missense_Mutation p.I318M 0.26 deleterious(0.02) probably_damaging(0.929) TCGA-CJ-4920-01 1 217665062 217665062 T C GPATCH2 Missense_Mutation p.R413G 0.27 tolerated(0.17) possibly_damaging(0.907) TCGA-CJ-4920-01 1 226027665 226027665 G A EPHX1 Silent p.K286K 0.33 TCGA-CJ-4920-01 1 233363106 233363106 C G PCNXL2 Missense_Mutation p.Q790H 0.07 tolerated(0.17) benign(0.401) TCGA-CJ-4920-01 1 237586481 237586481 A T RYR2 Missense_Mutation p.N313I 0.07 benign(0.023) TCGA-CJ-4920-01 1 247061603 247061603 G T AHCTF1 Silent p.L519L 0.24 TCGA-CJ-4920-01 1 40980774 40980783 TACAGCCAAG - EXO5 Frame_Shift_Del p.Y186* 0.25 TCGA-CJ-4920-01 1 62973695 62973695 C A DOCK7 Missense_Mutation p.D1441Y 0.26 deleterious(0.01) possibly_damaging(0.844) TCGA-CJ-4920-01 1 77094481 77094482 - A ST6GALNAC3 Frame_Shift_Ins p.L304Ifs*16 0.23 TCGA-CJ-4920-01 20 43386410 43386410 C T RIMS4 Missense_Mutation p.D119N 0.29 deleterious_low_confidence(0) possibly_damaging(0.586) TCGA-CJ-4920-01 20 5948539 5948539 A G MCM8 Missense_Mutation p.N364S 0.03 tolerated(0.1) possibly_damaging(0.805) TCGA-CJ-4920-01 21 18966591 18966612 TGGCTTTTTTCTGGGCAAAGGG - BTG3 Frame_Shift_Del p.H230Qfs*36 0.26 TCGA-CJ-4920-01 21 19698767 19698767 A T TMPRSS15 Missense_Mutation p.Y635N 0.29 deleterious(0) probably_damaging(0.95) TCGA-CJ-4920-01 21 30442596 30442596 T A CCT8 Missense_Mutation p.Q41H 0.28 tolerated(0.08) benign(0.043) TCGA-CJ-4920-01 21 37617853 37617854 TC - DOPEY2 Frame_Shift_Del p.S1193Qfs*63 0.26 TCGA-CJ-4920-01 22 21989453 21989453 C T CCDC116 Silent p.R367R 0.28 TCGA-CJ-4920-01 22 24108075 24108075 G T CHCHD10 3'UTR 0.29 TCGA-CJ-4920-01 22 24176989 24176989 C G DERL3 3'UTR 0.29 TCGA-CJ-4920-01 22 50903133 50903133 A G SBF1 Missense_Mutation p.V489A 0.29 deleterious(0.03) possibly_damaging(0.848) TCGA-CJ-4920-01 2 107460175 107460175 C T ST6GAL2 Missense_Mutation p.G87S 0.33 benign(0.002) TCGA-CJ-4920-01 2 120129921 120129921 G T DBI 3'UTR 0.22 TCGA-CJ-4920-01 2 131128292 131128292 C - PTPN18 Frame_Shift_Del p.F258Sfs*10 0.27 TCGA-CJ-4920-01 2 131521736 131521736 A T AMER3 Silent p.P697P 0.27 TCGA-CJ-4920-01 2 167160593 167160593 T A SCN9A Intron 0.29 TCGA-CJ-4920-01 2 170103247 170103247 T A LRP2 Missense_Mutation p.D1053V 0.28 probably_damaging(1) TCGA-CJ-4920-01 2 174131419 174131419 C - MLTK Frame_Shift_Del p.A783Pfs*49 0.43 TCGA-CJ-4920-01 2 179490104 179490104 C T TTN Missense_Mutation p.G14815E 0.25 TCGA-CJ-4920-01 2 198570416 198570416 G C MARS2 Missense_Mutation p.G96A 0.23 deleterious(0) probably_damaging(1) TCGA-CJ-4920-01 2 209007637 209007637 G T CRYGB Missense_Mutation p.H85N 0.30 tolerated(0.11) benign(0.004) TCGA-CJ-4920-01 2 216289816 216289816 C - FN1 Splice_Site p.X346_splice 0.29 TCGA-CJ-4920-01 2 234754423 234754423 T A HJURP Missense_Mutation p.K149I 0.32 deleterious(0) probably_damaging(0.993) TCGA-CJ-4920-01 2 238280464 238280464 C A COL6A3 Missense_Mutation p.S1399I 0.21 probably_damaging(0.949) TCGA-CJ-4920-01 2 37366825 37366825 T G EIF2AK2 Missense_Mutation p.Q155H 0.07 tolerated(0.05) possibly_damaging(0.5) TCGA-CJ-4920-01 2 37458771 37458771 C T CEBPZ 5'UTR 0.27 TCGA-CJ-4920-01 2 85598666 85598666 G T ELMOD3 Missense_Mutation p.W196C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CJ-4920-01 2 97217964 97217964 C A ARID5A Missense_Mutation p.L567I 0.29 deleterious(0.02) possibly_damaging(0.627) TCGA-CJ-4920-01 3 109031497 109031503 AAATCAC - DPPA2 Frame_Shift_Del p.V24* 0.30 TCGA-CJ-4920-01 3 121263752 121263752 T C POLQ Silent p.G55G 0.08 TCGA-CJ-4920-01 3 126216954 126216954 C T UROC1 Missense_Mutation p.D520N 0.25 deleterious(0) probably_damaging(1) TCGA-CJ-4920-01 3 179096586 179096586 C A MFN1 Nonsense_Mutation p.S549* 0.24 TCGA-CJ-4920-01 3 182759359 182759359 C G MCCC1 Silent p.R421R 0.26 TCGA-CJ-4920-01 3 184049812 184049812 A G EIF4G1 Missense_Mutation p.Q1526R 0.26 deleterious(0.02) benign(0.099) TCGA-CJ-4920-01 3 195954575 195954575 G A SLC51A Missense_Mutation p.R110H 0.24 deleterious(0) probably_damaging(0.953) TCGA-CJ-4920-01 3 38962724 38962724 G T SCN11A Silent p.A245A 0.39 TCGA-CJ-4920-01 3 47125684 47125684 G - SETD2 Frame_Shift_Del p.K1863Sfs*2 0.27 TCGA-CJ-4920-01 3 52651349 52651354 CACCAG T PBRM1 Frame_Shift_Del p.A581Efs*19 0.38 TCGA-CJ-4920-01 3 68788346 68788346 G C FAM19A4 Silent p.S97S 0.37 TCGA-CJ-4920-01 3 71247084 71247084 C G FOXP1 Missense_Mutation p.V106L 0.07 tolerated_low_confidence(0.58) benign(0.087) TCGA-CJ-4920-01 3 9792055 9792055 C A OGG1 Missense_Mutation p.P29T 0.44 tolerated(0.12) benign(0.02) TCGA-CJ-4920-01 4 125631599 125631599 A C ANKRD50 Missense_Mutation p.F23C 0.29 deleterious(0) probably_damaging(0.987) TCGA-CJ-4920-01 4 149356735 149356735 T G NR3C2 Silent p.P426P 0.27 TCGA-CJ-4920-01 4 41035250 41035250 G T APBB2 Intron 0.24 TCGA-CJ-4920-01 4 47559972 47559972 A T ATP10D Missense_Mutation p.N706Y 0.25 deleterious(0.03) benign(0.148) TCGA-CJ-4920-01 4 48566087 48566087 C G FRYL Missense_Mutation p.L1158F 0.28 deleterious(0) possibly_damaging(0.723) TCGA-CJ-4920-01 4 65274893 65274893 G A TECRL Silent p.H59H 0.08 TCGA-CJ-4920-01 4 677418 677418 C T MFSD7 Missense_Mutation p.A325T 0.20 tolerated(0.17) benign(0.03) TCGA-CJ-4920-01 4 83838940 83838940 C G THAP9 Missense_Mutation p.N525K 0.26 deleterious(0.05) possibly_damaging(0.655) TCGA-CJ-4920-01 5 126993520 126993520 C A CTXN3 3'UTR 0.26 TCGA-CJ-4920-01 5 149563073 149563073 C G CDX1 Missense_Mutation p.R210G 0.23 deleterious(0) possibly_damaging(0.904) TCGA-CJ-4920-01 5 178771139 178771139 C G ADAMTS2 Missense_Mutation p.E55Q 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-CJ-4920-01 5 179149818 179149818 C A CANX Missense_Mutation p.P399H 0.22 deleterious(0) probably_damaging(0.942) TCGA-CJ-4920-01 5 21459810 21459810 C A GUSBP1 RNA 0.21 TCGA-CJ-4920-01 5 31299715 31299715 A T CDH6 Missense_Mutation p.D263V 0.19 deleterious(0.02) possibly_damaging(0.733) TCGA-CJ-4920-01 5 56160679 56160679 T G MAP3K1 Nonsense_Mutation p.L318* 0.25 TCGA-CJ-4920-01 6 12161803 12161803 C - HIVEP1 Frame_Shift_Del p.S2208Qfs*19 0.28 TCGA-CJ-4920-01 6 131995388 131995388 A G ENPP3 Silent p.E243E 0.31 TCGA-CJ-4920-01 6 28329128 28329128 C T ZKSCAN3 Silent p.L144L 0.04 TCGA-CJ-4920-01 6 31507024 31507024 A G DDX39B Missense_Mutation p.I80T 0.28 deleterious(0) benign(0.259) TCGA-CJ-4920-01 6 43107181 43107181 G T PTK7 Missense_Mutation p.Q520H 0.27 deleterious(0.01) probably_damaging(1) TCGA-CJ-4920-01 7 121650685 121650685 C G PTPRZ1 Missense_Mutation p.H529D 0.36 tolerated(0.27) benign(0.021) TCGA-CJ-4920-01 7 152550641 152550641 A G ACTR3B Silent p.G380G 0.06 TCGA-CJ-4920-01 7 158447311 158447311 G T NCAPG2 Silent p.R908R 0.23 TCGA-CJ-4920-01 7 77538203 77538203 G A PHTF2 Missense_Mutation p.G146E 0.05 deleterious(0) probably_damaging(1) TCGA-CJ-4920-01 8 132956999 132956999 T G EFR3A Missense_Mutation p.L32R 0.38 deleterious(0) probably_damaging(0.999) TCGA-CJ-4920-01 8 68137214 68137214 A - ARFGEF1 Frame_Shift_Del p.W1378Gfs*2 0.21 TCGA-CJ-4920-01 8 70514054 70514054 C G SULF1 Missense_Mutation p.P351A 0.26 tolerated(0.6) benign(0.013) TCGA-CJ-4920-01 8 95861709 95861709 A C INTS8 Missense_Mutation p.N427T 0.22 tolerated_low_confidence(0.27) benign(0.021) TCGA-CJ-4920-01 9 111855820 111855820 T G TMEM245 Missense_Mutation p.N284T 0.27 tolerated(0.93) benign(0.001) TCGA-CJ-4920-01 9 111979310 111979310 G C EPB41L4B Missense_Mutation p.Q509E 0.30 tolerated(0.36) benign(0.012) TCGA-CJ-4920-01 9 112172526 112172526 G A PTPN3 Nonsense_Mutation p.Q495* 0.32 TCGA-CJ-4920-01 9 118982390 118982390 A T PAPPA Missense_Mutation p.D698V 0.30 deleterious(0) possibly_damaging(0.804) TCGA-CJ-4920-01 9 131514950 131514950 A C ZER1 Splice_Site p.X308_splice 0.10 TCGA-CJ-4920-01 9 133542139 133542139 C T PRDM12 Missense_Mutation p.A123V 0.25 deleterious(0.02) benign(0.008) TCGA-CJ-4920-01 9 133750263 133750263 C T ABL1 Missense_Mutation p.A384V 0.23 deleterious(0) possibly_damaging(0.881) TCGA-CJ-4920-01 9 38395753 38395753 G T ALDH1B1 Missense_Mutation p.R3L 0.10 deleterious_low_confidence(0) benign(0.085) TCGA-CJ-4920-01 9 77435329 77435329 T G TRPM6 Missense_Mutation p.Q342P 0.20 tolerated(0.2) benign(0.013) TCGA-CJ-4920-01 9 86518027 86518027 C A KIF27 Missense_Mutation p.G469V 0.24 tolerated(0.06) benign(0.037) TCGA-CJ-4920-01 X 100871360 100871360 G T ARMCX6 Missense_Mutation p.T84N 0.28 tolerated(0.22) benign(0.012) TCGA-CJ-4920-01 X 101857826 101857826 A T ARMCX5 Missense_Mutation p.T253S 0.25 deleterious(0.02) benign(0.368) TCGA-CJ-4920-01 X 110964871 110964871 T A ALG13 Missense_Mutation p.V456E 0.22 deleterious(0) probably_damaging(0.996) TCGA-CJ-4920-01 X 113965887 113965887 G C HTR2C Missense_Mutation p.V74L 0.28 deleterious(0.02) probably_damaging(1) TCGA-CJ-4920-01 X 118108850 118108850 G T LONRF3 Missense_Mutation p.G36V 0.50 deleterious_low_confidence(0.03) benign(0.024) TCGA-CJ-4920-01 X 122318320 122318320 T C GRIA3 5'UTR 0.30 TCGA-CJ-4920-01 X 129499386 129499386 C T SLC25A14 Intron 0.15 TCGA-CJ-4920-01 X 132351883 132351883 G A TFDP3 Silent p.G135G 0.31 TCGA-CJ-4920-01 X 151123262 151123262 A T GABRE Missense_Mutation p.Y478N 0.30 tolerated(0.23) possibly_damaging(0.855) TCGA-CJ-4920-01 X 153278674 153278674 G T IRAK1 Missense_Mutation p.Q584K 0.28 deleterious(0.01) possibly_damaging(0.624) TCGA-CJ-4920-01 X 18622812 18622812 G A CDKL5 Missense_Mutation p.E590K 0.20 deleterious_low_confidence(0) benign(0.305) TCGA-CJ-4920-01 X 53430820 53430820 T - SMC1A Frame_Shift_Del p.K734Nfs*8 0.31 TCGA-CJ-4920-01 X 75650469 75650469 G T MAGEE1 Nonsense_Mutation p.E716* 0.38 TCGA-CJ-4920-01 X 91873325 91873325 C A PCDH11X Missense_Mutation p.L1144I 0.25 tolerated(0.08) possibly_damaging(0.805) TCGA-CJ-4923-01 10 64565048 64565048 C A ADO Missense_Mutation p.P77T 0.21 tolerated(0.35) benign(0.137) TCGA-CJ-4923-01 11 102206699 102206699 G A BIRC3 Missense_Mutation p.D443N 0.08 deleterious(0.05) probably_damaging(0.993) TCGA-CJ-4923-01 11 103349892 103349892 C G DYNC2H1 Missense_Mutation p.R4286G 0.09 benign(0.005) TCGA-CJ-4923-01 11 122850082 122850082 C T BSX Missense_Mutation p.V116I 0.06 deleterious(0) probably_damaging(0.996) TCGA-CJ-4923-01 11 133807380 133807380 G A IGSF9B Silent p.D190D 0.08 TCGA-CJ-4923-01 11 48238947 48238947 A G OR4B1 Missense_Mutation p.I196V 0.10 tolerated(0.42) benign(0.03) TCGA-CJ-4923-01 11 65308037 65308037 T C LTBP3 Missense_Mutation p.K1009R 0.12 tolerated(0.86) possibly_damaging(0.86) TCGA-CJ-4923-01 11 67219407 67219407 G A GPR152 Silent p.F263F 0.25 TCGA-CJ-4923-01 11 67799656 67799656 T A NDUFS8 Missense_Mutation p.L13Q 0.17 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-CJ-4923-01 12 100601498 100601498 A G ACTR6 Missense_Mutation p.I105V 0.15 tolerated(0.2) possibly_damaging(0.565) TCGA-CJ-4923-01 12 107393578 107393578 G A CRY1 Silent p.F296F 0.13 TCGA-CJ-4923-01 12 49578725 49578727 ACA - TUBA1A 3'UTR 0.13 TCGA-CJ-4923-01 12 53001781 53001781 A C KRT73 3'UTR 0.10 TCGA-CJ-4923-01 12 57351111 57351120 CCAGCAGTTT - RDH16 Frame_Shift_Del p.K43Pfs*16 0.18 TCGA-CJ-4923-01 15 40308848 40308848 T C EIF2AK4 Missense_Mutation p.L1302S 0.18 deleterious(0) possibly_damaging(0.454) TCGA-CJ-4923-01 15 65624284 65624284 G A IGDCC3 Silent p.N381N 0.17 TCGA-CJ-4923-01 15 81591913 81591913 G A IL16 Missense_Mutation p.G749E 0.09 tolerated(0.2) benign(0.009) TCGA-CJ-4923-01 15 91292871 91292871 A C BLM Missense_Mutation p.T125P 0.11 tolerated(0.12) possibly_damaging(0.556) TCGA-CJ-4923-01 16 69368915 69368915 T C COG8 Missense_Mutation p.T308A 0.10 tolerated(0.76) benign(0.002) TCGA-CJ-4923-01 17 1579248 1579248 G A PRPF8 Missense_Mutation p.L885F 0.12 deleterious(0.02) benign(0.048) TCGA-CJ-4923-01 17 29632303 29632303 G T EVI2B Missense_Mutation p.P109T 0.16 deleterious(0.04) probably_damaging(0.958) TCGA-CJ-4923-01 17 57762458 57762458 T - CLTC Frame_Shift_Del p.N1492Kfs*34 0.12 TCGA-CJ-4923-01 17 57963523 57963523 C T TUBD1 Missense_Mutation p.A81T 0.04 tolerated(0.05) benign(0.101) TCGA-CJ-4923-01 17 66883567 66883567 G C ABCA8 Silent p.S1035S 0.15 TCGA-CJ-4923-01 19 13910687 13910687 G A ZSWIM4 Missense_Mutation p.G103R 0.12 deleterious(0) probably_damaging(0.991) TCGA-CJ-4923-01 19 17039855 17039855 G T CPAMD8 Missense_Mutation p.T1061N 0.14 tolerated(0.11) possibly_damaging(0.577) TCGA-CJ-4923-01 19 39998732 39998732 C G DLL3 3'UTR 0.15 TCGA-CJ-4923-01 19 42914560 42914560 C - LIPE Frame_Shift_Del p.V440Yfs*123 0.09 TCGA-CJ-4923-01 19 7615512 7615512 G A PNPLA6 Missense_Mutation p.D695N 0.19 deleterious(0.01) possibly_damaging(0.697) TCGA-CJ-4923-01 1 115593075 115593075 A G TSPAN2 3'UTR 0.21 TCGA-CJ-4923-01 1 151339307 151339307 C T SELENBP1 Silent p.P185P 0.08 TCGA-CJ-4923-01 1 15893684 15893684 G A DNAJC16 Missense_Mutation p.M623I 0.16 tolerated(0.87) benign(0.009) TCGA-CJ-4923-01 1 222867134 222867134 G A AIDA Missense_Mutation p.P96S 0.07 tolerated(0.1) benign(0.038) TCGA-CJ-4923-01 1 25825032 25825033 - A TMEM57 3'UTR 0.08 TCGA-CJ-4923-01 20 15412069 15412069 C A MACROD2 Missense_Mutation p.T187K 0.12 deleterious(0) probably_damaging(0.997) TCGA-CJ-4923-01 20 26084148 26084148 T C NCOR1P1 RNA 0.13 TCGA-CJ-4923-01 20 32232219 32232219 G A CBFA2T2 Missense_Mutation p.G528S 0.04 deleterious(0.02) probably_damaging(0.979) TCGA-CJ-4923-01 20 39984632 39984632 T C LPIN3 Silent p.T587T 0.16 TCGA-CJ-4923-01 22 22317229 22317229 C T TOP3B Missense_Mutation p.R414K 0.14 tolerated(0.06) benign(0.393) TCGA-CJ-4923-01 2 105859013 105859013 C T GPR45 Missense_Mutation p.S233L 0.11 deleterious(0.01) benign(0.069) TCGA-CJ-4923-01 2 165551129 165551129 A C COBLL1 Missense_Mutation p.S963A 0.09 tolerated(0.22) benign(0.146) TCGA-CJ-4923-01 2 180036930 180036930 A - SESTD1 Frame_Shift_Del p.C96Vfs*3 0.15 TCGA-CJ-4923-01 2 197002269 197002269 C A STK17B Nonsense_Mutation p.E341* 0.11 TCGA-CJ-4923-01 2 227662246 227662246 G C IRS1 Silent p.T403T 0.11 TCGA-CJ-4923-01 2 27320391 27320391 G T KHK Missense_Mutation p.Q146H 0.15 deleterious(0.02) probably_damaging(0.972) TCGA-CJ-4923-01 2 50724674 50724674 C G NRXN1 Missense_Mutation p.E932D 0.18 deleterious(0) possibly_damaging(0.505) TCGA-CJ-4923-01 3 10191505 10191505 C - VHL Frame_Shift_Del p.R167Gfs*3 0.19 TCGA-CJ-4923-01 3 123987876 123987876 A G KALRN Missense_Mutation p.D246G 0.26 deleterious(0.05) benign(0.205) TCGA-CJ-4923-01 3 191179038 191179038 G A PYDC2 Silent p.L29L 0.13 TCGA-CJ-4923-01 3 47162546 47162546 T - SETD2 Frame_Shift_Del p.I1194Yfs*42 0.14 TCGA-CJ-4923-01 3 52437168 52437168 T A BAP1 Nonsense_Mutation p.K626* 0.09 TCGA-CJ-4923-01 3 52522271 52522278 GGCCGACT - NISCH Frame_Shift_Del p.K921Nfs*45 0.19 TCGA-CJ-4923-01 3 52582140 52582140 C G PBRM1 Missense_Mutation p.R1563P 0.15 deleterious(0) probably_damaging(0.994) TCGA-CJ-4923-01 4 155155839 155155839 T C DCHS2 Missense_Mutation p.E2867G 0.13 tolerated(0.1) benign(0.231) TCGA-CJ-4923-01 4 4190659 4190659 G C OTOP1 Missense_Mutation p.D570E 0.05 deleterious(0) probably_damaging(0.972) TCGA-CJ-4923-01 5 141233715 141233715 G A PCDH1 Silent p.C1202C 0.12 TCGA-CJ-4923-01 5 32404076 32404076 A T ZFR Missense_Mutation p.C387S 0.20 deleterious(0) unknown(0) TCGA-CJ-4923-01 5 79855842 79855842 C T ANKRD34B 5'UTR 0.06 TCGA-CJ-4923-01 6 158497795 158497795 A G SYNJ2 Silent p.K810K 0.12 TCGA-CJ-4923-01 6 20481597 20481597 C A E2F3 Silent p.T222T 0.10 TCGA-CJ-4923-01 6 27420046 27420046 G C ZNF184 Nonsense_Mutation p.S431* 0.09 TCGA-CJ-4923-01 7 136700123 136700123 G A CHRM2 Missense_Mutation p.V171M 0.09 deleterious(0) probably_damaging(0.998) TCGA-CJ-4923-01 7 139086943 139086943 A T LUC7L2 Nonsense_Mutation p.K172* 0.12 TCGA-CJ-4923-01 7 87436831 87436831 A G RUNDC3B Missense_Mutation p.Y384C 0.18 deleterious_low_confidence(0.04) benign(0.379) TCGA-CJ-4923-01 8 100148945 100148945 A C VPS13B Missense_Mutation p.D539A 0.27 deleterious(0) possibly_damaging(0.857) TCGA-CJ-4923-01 8 133925416 133925416 C - TG Frame_Shift_Del p.H1429Tfs*20 0.27 TCGA-CJ-4923-01 8 82607108 82607108 T - SLC10A5 Frame_Shift_Del p.I34Yfs*13 0.11 TCGA-CJ-4923-01 9 116303649 116303649 C T RGS3 Intron 0.06 TCGA-CJ-4923-01 9 119380675 119380676 - A ASTN2 Frame_Shift_Ins p.G1044Wfs*12 0.12 TCGA-CJ-4923-01 9 2718826 2718826 G T KCNV2 Missense_Mutation p.G363C 0.07 tolerated(0.19) probably_damaging(0.987) TCGA-CJ-4923-01 X 1712782 1712782 G A AKAP17A Missense_Mutation p.G143R 0.11 deleterious(0.03) possibly_damaging(0.702) TCGA-CJ-4923-01 Y 6931951 6931951 T C TBL1Y Missense_Mutation p.F73S 0.07 tolerated(0.25) probably_damaging(0.993) TCGA-CJ-5671-01 10 129160369 129160369 A T DOCK1 Missense_Mutation p.I1088L 0.20 tolerated(0.06) benign(0) TCGA-CJ-5671-01 10 16878268 16878269 TC - CUBN Frame_Shift_Del p.R3382Kfs*3 0.11 TCGA-CJ-5671-01 10 29752498 29752498 T C SVIL Missense_Mutation p.K2067R 0.29 deleterious(0.03) possibly_damaging(0.468) TCGA-CJ-5671-01 10 70056040 70056040 A C PBLD Missense_Mutation p.V89G 0.22 deleterious(0) probably_damaging(0.987) TCGA-CJ-5671-01 10 96076377 96076377 C A PLCE1 Missense_Mutation p.S2069Y 0.05 tolerated(0.09) possibly_damaging(0.747) TCGA-CJ-5671-01 10 99006064 99006064 A T ARHGAP19 Missense_Mutation p.L320M 0.26 tolerated(0.21) benign(0.196) TCGA-CJ-5671-01 11 103091360 103091360 C A DYNC2H1 Silent p.V2985V 0.18 TCGA-CJ-5671-01 11 10789686 10789686 T G CTR9 Missense_Mutation p.N646K 0.09 deleterious(0) benign(0.063) TCGA-CJ-5671-01 11 134109913 134109913 C T VPS26B Missense_Mutation p.R137C 0.05 deleterious(0) probably_damaging(0.965) TCGA-CJ-5671-01 11 56143438 56143438 G C OR8U1 Missense_Mutation p.L113F 0.15 tolerated(1) benign(0.136) TCGA-CJ-5671-01 11 56143439 56143439 C T OR8U1 Silent p.L114L 0.15 TCGA-CJ-5671-01 11 66616396 66616396 C T PC Missense_Mutation p.D1171N 0.20 tolerated(0.09) benign(0.031) TCGA-CJ-5671-01 11 71693807 71693807 A T RNF121 Missense_Mutation p.M82L 0.07 tolerated(1) benign(0) TCGA-CJ-5671-01 11 77817939 77817939 T C ALG8 Silent p.R364R 0.08 TCGA-CJ-5671-01 12 1034639 1034640 AT G RAD52 Frame_Shift_Del p.R173Sfs*3 0.18 TCGA-CJ-5671-01 12 110421492 110421492 T A GIT2 Missense_Mutation p.H138L 0.22 deleterious(0) probably_damaging(0.998) TCGA-CJ-5671-01 12 2929366 2929366 T - ITFG2 Frame_Shift_Del p.L174Pfs*15 0.17 TCGA-CJ-5671-01 12 59276667 59276667 T C LRIG3 Silent p.P488P 0.28 TCGA-CJ-5671-01 12 77444477 77444477 C T E2F7 Silent p.R139R 0.20 TCGA-CJ-5671-01 13 32721987 32721987 C A FRY Missense_Mutation p.T432N 0.09 tolerated(0.08) benign(0.034) TCGA-CJ-5671-01 13 47345584 47345584 G A ESD Silent p.H272H 0.18 TCGA-CJ-5671-01 14 21359845 21359845 C T RNASE3 5'UTR 0.11 TCGA-CJ-5671-01 14 50298067 50298067 A C NEMF Missense_Mutation p.F299V 0.12 deleterious(0) probably_damaging(0.991) TCGA-CJ-5671-01 14 50597307 50597307 T A SOS2 Silent p.P1083P 0.14 TCGA-CJ-5671-01 14 52922174 52922174 G C TXNDC16 Silent p.T570T 0.10 TCGA-CJ-5671-01 15 35275034 35275034 G A ZNF770 Missense_Mutation p.T201I 0.17 tolerated(0.12) probably_damaging(0.998) TCGA-CJ-5671-01 15 55965850 55965850 C T PRTG Missense_Mutation p.S524N 0.24 deleterious(0) probably_damaging(0.995) TCGA-CJ-5671-01 15 99192822 99192822 C T IGF1R Silent p.G4G 0.13 TCGA-CJ-5671-01 16 84270394 84270394 G T KCNG4 Missense_Mutation p.T233N 0.18 deleterious(0) probably_damaging(0.995) TCGA-CJ-5671-01 17 3618235 3618235 C G ITGAE Missense_Mutation p.C1149S 0.03 deleterious(0) probably_damaging(0.95) TCGA-CJ-5671-01 17 40963557 40963557 T A BECN1 Intron 0.12 TCGA-CJ-5671-01 17 43347888 43347888 A T MAP3K14-AS1 3'Flank 0.21 TCGA-CJ-5671-01 17 45909254 45909254 T C LRRC46 5'UTR 0.30 TCGA-CJ-5671-01 17 55948719 55948719 A G CUEDC1 Missense_Mutation p.Y266H 0.14 deleterious(0.04) benign(0.021) TCGA-CJ-5671-01 17 60782793 60782793 G T MARCH10 Intron 0.12 TCGA-CJ-5671-01 17 6981408 6981408 A G CLEC10A Missense_Mutation p.L31P 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-CJ-5671-01 18 2784571 2784571 T C SMCHD1 Missense_Mutation p.F1891L 0.05 deleterious(0) probably_damaging(0.993) TCGA-CJ-5671-01 19 20229775 20229779 ATAAG - ZNF90 Frame_Shift_Del p.I473Sfs*3 0.11 TCGA-CJ-5671-01 19 37967302 37967302 G A ZNF570 Missense_Mutation p.M74I 0.17 tolerated(0.23) benign(0.002) TCGA-CJ-5671-01 19 42563630 42563630 C A GRIK5 Missense_Mutation p.E186D 0.20 tolerated(0.55) benign(0.001) TCGA-CJ-5671-01 19 52090388 52090388 G T ZNF175 Missense_Mutation p.K268N 0.14 tolerated(0.42) benign(0.01) TCGA-CJ-5671-01 19 52227213 52227213 T C HAS1 5'UTR 0.08 TCGA-CJ-5671-01 19 9049695 9049695 G T MUC16 Missense_Mutation p.P10646T 0.03 benign(0.003) TCGA-CJ-5671-01 1 16074138 16074138 G C TMEM82 3'UTR 0.22 TCGA-CJ-5671-01 1 165652237 165652237 G T ALDH9A1 Silent p.G146G 0.28 TCGA-CJ-5671-01 1 171509199 171509202 TCAG - PRRC2C Frame_Shift_Del p.I863Kfs*12 0.08 TCGA-CJ-5671-01 1 183230359 183230359 G T NMNAT2 Missense_Mutation p.S244Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-CJ-5671-01 1 227842449 227842449 A T ZNF678 Silent p.S166S 0.12 TCGA-CJ-5671-01 1 46662429 46662429 C A POMGNT1 Missense_Mutation p.V110L 0.20 probably_damaging(0.917) TCGA-CJ-5671-01 1 78196339 78196339 T AA USP33 Frame_Shift_Ins p.Y232Ffs*11 0.09 TCGA-CJ-5671-01 20 23804525 23804525 G A CST2 3'UTR 0.15 TCGA-CJ-5671-01 20 33026360 33026360 A G ITCH Silent p.S242S 0.13 TCGA-CJ-5671-01 21 31859596 31859596 G T KRTAP19-2 Nonsense_Mutation p.C24* 0.09 TCGA-CJ-5671-01 21 38610801 38610801 A G DSCR3 Missense_Mutation p.V104A 0.25 tolerated(0.54) benign(0.11) TCGA-CJ-5671-01 22 33780246 33780246 C T LARGE Missense_Mutation p.E313K 0.20 tolerated(0.29) possibly_damaging(0.676) TCGA-CJ-5671-01 22 50518347 50518347 G A MLC1 Silent p.N141N 0.20 TCGA-CJ-5671-01 2 171509586 171509587 - T MYO3B Frame_Shift_Ins p.S1330Ffs*18 0.09 TCGA-CJ-5671-01 2 220402025 220402025 C A ASIC4 Silent p.I569I 0.19 TCGA-CJ-5671-01 2 232457795 232457795 G A C2orf57 Missense_Mutation p.D45N 0.26 tolerated(0.26) possibly_damaging(0.908) TCGA-CJ-5671-01 2 238233432 238233432 A T COL6A3 Missense_Mutation p.S3173R 0.10 unknown(0) TCGA-CJ-5671-01 2 239180147 239180147 A G PER2 Missense_Mutation p.F193S 0.21 deleterious(0) probably_damaging(0.998) TCGA-CJ-5671-01 2 242545863 242545863 C A THAP4 Silent p.V422V 0.24 TCGA-CJ-5671-01 2 27465207 27465207 C G CAD Missense_Mutation p.A2045G 0.29 tolerated(0.44) possibly_damaging(0.572) TCGA-CJ-5671-01 2 38956797 38956797 A T GALM Missense_Mutation p.N245I 0.20 deleterious(0.02) probably_damaging(1) TCGA-CJ-5671-01 2 73302829 73302829 C T RAB11FIP5 Silent p.S594S 0.16 TCGA-CJ-5671-01 2 89185365 89185365 G A IGKV4-1 Missense_Mutation p.G20E 0.21 deleterious(0) probably_damaging(0.98) TCGA-CJ-5671-01 3 155547523 155547523 C A SLC33A1 Missense_Mutation p.C479F 0.07 deleterious(0) probably_damaging(0.995) TCGA-CJ-5671-01 3 169496863 169496863 G - MYNN Frame_Shift_Del p.Q193Rfs*12 0.19 TCGA-CJ-5671-01 3 42678973 42678974 - A NKTR Frame_Shift_Ins p.N594Kfs*19 0.22 TCGA-CJ-5671-01 3 47144868 47144868 G A SETD2 Missense_Mutation p.H1629Y 0.25 deleterious(0) possibly_damaging(0.885) TCGA-CJ-5671-01 3 52702517 52702532 ATAATAGGACTTTGCA - PBRM1 Frame_Shift_Del p.N122Kfs*47 0.11 TCGA-CJ-5671-01 5 127637113 127637113 C T FBN2 Missense_Mutation p.E2003K 0.20 tolerated(0.07) probably_damaging(0.932) TCGA-CJ-5671-01 5 132939626 132939626 G A FSTL4 Silent p.L17L 0.11 TCGA-CJ-5671-01 5 82836753 82836753 C T VCAN Missense_Mutation p.A2644V 0.23 tolerated(0.09) benign(0.066) TCGA-CJ-5671-01 6 107067108 107067108 C A RTN4IP1 Missense_Mutation p.G197C 0.24 deleterious(0) probably_damaging(0.98) TCGA-CJ-5671-01 6 168443302 168443302 G A KIF25 Silent p.A297A 0.18 TCGA-CJ-5671-01 6 33179587 33179587 A G RING1 Silent p.Q309Q 0.10 TCGA-CJ-5671-01 6 43469319 43469319 C A TJAP1 Missense_Mutation p.R62S 0.23 deleterious(0) possibly_damaging(0.758) TCGA-CJ-5671-01 6 90572531 90572531 T G CASP8AP2 RNA 0.32 TCGA-CJ-5671-01 6 90572532 90572532 T C CASP8AP2 RNA 0.32 TCGA-CJ-5671-01 7 100883107 100883107 C T FIS1 Missense_Mutation p.V147M 0.14 tolerated(0.58) unknown(0) TCGA-CJ-5671-01 7 143884368 143884368 G A ARHGEF35 Missense_Mutation p.P370L 0.22 tolerated(0.1) benign(0.015) TCGA-CJ-5671-01 7 63537854 63537854 A T ZNF727 Nonsense_Mutation p.K143* 0.09 TCGA-CJ-5671-01 7 73008146 73008146 G T MLXIPL 3'UTR 0.32 TCGA-CJ-5671-01 7 99818579 99818579 T C PVRIG Missense_Mutation p.L229P 0.11 tolerated(0.08) probably_damaging(0.991) TCGA-CJ-5671-01 8 144776493 144776493 C T ZNF707 Silent p.L303L 0.17 TCGA-CJ-5671-01 8 145738485 145738485 C T RECQL4 Missense_Mutation p.A834T 0.19 tolerated(0.07) benign(0.071) TCGA-CJ-5671-01 8 52361653 52361653 G C PXDNL Silent p.P425P 0.12 TCGA-CJ-5671-01 9 17298419 17298419 G T CNTLN Intron 0.26 TCGA-CJ-5671-01 9 35749857 35749857 T C RGP1 Silent p.T35T 0.07 TCGA-CJ-5671-01 9 75515993 75515994 - T ALDH1A1 3'UTR 0.10 TCGA-CJ-5671-01 X 114424200 114424200 G T RBMXL3 Missense_Mutation p.A66S 0.36 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-CJ-5671-01 X 86921522 86921522 G T KLHL4 Intron 0.40 TCGA-CJ-5671-01 Y 2829189 2829189 G A ZFY Missense_Mutation p.V46M 0.37 tolerated(0.15) benign(0.103) TCGA-CJ-5672-01 10 7682816 7682816 A C ITIH5 Missense_Mutation p.L101R 0.27 tolerated(0.05) benign(0.115) TCGA-CJ-5672-01 11 117691415 117691415 G T FXYD2 Intron 0.26 TCGA-CJ-5672-01 11 117691416 117691416 T G FXYD2 Intron 0.29 TCGA-CJ-5672-01 11 118938631 118938631 C G VPS11 Missense_Mutation p.P33A 0.18 tolerated(0.71) benign(0.072) TCGA-CJ-5672-01 11 123847986 123847986 A T OR10S1 Missense_Mutation p.L138Q 0.09 deleterious(0.02) possibly_damaging(0.871) TCGA-CJ-5672-01 11 30034211 30034211 C A KCNA4 Missense_Mutation p.M5I 0.17 deleterious_low_confidence(0) unknown(0) TCGA-CJ-5672-01 11 48346714 48346714 C G OR4C3 Missense_Mutation p.I74M 0.16 deleterious(0.03) benign(0.2) TCGA-CJ-5672-01 11 55904652 55904652 A C OR8J3 Missense_Mutation p.I181M 0.27 deleterious(0.03) possibly_damaging(0.722) TCGA-CJ-5672-01 11 62472858 62472858 A T BSCL2 Missense_Mutation p.W107R 0.22 deleterious(0) probably_damaging(1) TCGA-CJ-5672-01 11 6263120 6263120 G T CNGA4 Intron 0.13 TCGA-CJ-5672-01 11 66483388 66483388 G A SPTBN2 Silent p.V74V 0.28 TCGA-CJ-5672-01 11 71707272 71707272 C A RNF121 Missense_Mutation p.L299M 0.28 deleterious(0.03) probably_damaging(0.969) TCGA-CJ-5672-01 12 100732421 100732421 T C SCYL2 Missense_Mutation p.I754T 0.28 tolerated(0.4) benign(0.001) TCGA-CJ-5672-01 12 10584769 10584770 - AA KLRC2 Frame_Shift_Ins p.G174Lfs*13 0.49 TCGA-CJ-5672-01 12 116429263 116429263 C A MED13L Missense_Mutation p.A1166S 0.25 deleterious(0.04) unknown(0) TCGA-CJ-5672-01 12 123213779 123213779 C T HCAR1 3'UTR 0.17 TCGA-CJ-5672-01 12 124104803 124104803 C A DDX55 3'UTR 0.28 TCGA-CJ-5672-01 12 27156169 27156169 C T TM7SF3 Silent p.P82P 0.23 TCGA-CJ-5672-01 12 53700059 53700059 G A C12orf10 Silent p.L240L 0.29 TCGA-CJ-5672-01 12 7639565 7639565 G A CD163 Silent p.L690L 0.07 TCGA-CJ-5672-01 12 99117077 99117077 A G APAF1 Missense_Mutation p.D1064G 0.06 deleterious(0.01) probably_damaging(0.965) TCGA-CJ-5672-01 13 28913320 28913320 C A FLT1 Nonsense_Mutation p.E825* 0.13 TCGA-CJ-5672-01 14 73759489 73759491 TGC - NUMB In_Frame_Del p.G134_T135delinsA 0.18 TCGA-CJ-5672-01 14 75287773 75287773 A - YLPM1 Frame_Shift_Del p.D2015Vfs*40 0.18 TCGA-CJ-5672-01 15 66023980 66023980 C T DENND4A Missense_Mutation p.S389N 0.28 deleterious(0) benign(0.396) TCGA-CJ-5672-01 15 81552201 81552201 G T IL16 Missense_Mutation p.R134M 0.30 deleterious(0) possibly_damaging(0.907) TCGA-CJ-5672-01 16 19613023 19613023 G T C16orf62 Silent p.V343V 0.10 TCGA-CJ-5672-01 16 46958369 46958369 C T GPT2 Silent p.V427V 0.11 TCGA-CJ-5672-01 16 67911665 67911665 A - EDC4 Frame_Shift_Del p.M271Cfs*23 0.09 TCGA-CJ-5672-01 16 70841462 70841462 T C HYDIN 3'UTR 0.39 TCGA-CJ-5672-01 16 77353974 77353974 G A ADAMTS18 Silent p.V768V 0.13 TCGA-CJ-5672-01 17 26687838 26687838 G A TMEM199 Missense_Mutation p.G167R 0.07 deleterious(0.02) probably_damaging(1) TCGA-CJ-5672-01 17 34937813 34937813 C T GGNBP2 Nonsense_Mutation p.Q354* 0.07 TCGA-CJ-5672-01 17 39967279 39967279 A T LEPREL4 Missense_Mutation p.F208Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-CJ-5672-01 17 56435542 56435542 G A RNF43 Missense_Mutation p.S532F 0.32 deleterious(0) probably_damaging(0.998) TCGA-CJ-5672-01 17 7340067 7340067 G A TMEM102 Missense_Mutation p.A257T 0.26 tolerated(0.22) benign(0.005) TCGA-CJ-5672-01 17 7722587 7722587 T A DNAH2 Missense_Mutation p.C3626S 0.34 benign(0.001) TCGA-CJ-5672-01 18 18586509 18586515 CTTACAG - ROCK1 Frame_Shift_Del p.A561Dfs*2 0.12 TCGA-CJ-5672-01 18 77806266 77806266 C A RBFA 3'UTR 0.45 TCGA-CJ-5672-01 19 10084433 10084433 T A COL5A3 Missense_Mutation p.K1204M 0.11 probably_damaging(0.999) TCGA-CJ-5672-01 19 10781221 10781221 C G ILF3 5'UTR 0.27 TCGA-CJ-5672-01 19 16977286 16977286 G T SIN3B Missense_Mutation p.Q607H 0.13 deleterious(0) probably_damaging(0.993) TCGA-CJ-5672-01 19 2917051 2917051 G C ZNF57 Missense_Mutation p.K144N 0.33 tolerated(0.09) benign(0.135) TCGA-CJ-5672-01 19 40540306 40540306 G A ZNF780B Silent p.I820I 0.25 TCGA-CJ-5672-01 19 50169188 50169188 G T BCL2L12 Silent p.P36P 0.24 TCGA-CJ-5672-01 19 56185308 56185310 GGA - U2AF2 In_Frame_Del p.E435del 0.31 TCGA-CJ-5672-01 19 56443398 56443398 G T NLRP13 Missense_Mutation p.L94M 0.26 deleterious(0) probably_damaging(0.999) TCGA-CJ-5672-01 19 6309756 6309756 T A ACER1 Missense_Mutation p.N147I 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-CJ-5672-01 19 7589957 7589957 T - MCOLN1 Frame_Shift_Del p.F49Sfs*2 0.32 TCGA-CJ-5672-01 1 109280146 109280146 G A FNDC7 Missense_Mutation p.V724M 0.24 deleterious(0) benign(0.077) TCGA-CJ-5672-01 1 118426150 118426150 A G GDAP2 Missense_Mutation p.S403P 0.14 tolerated(0.19) probably_damaging(0.91) TCGA-CJ-5672-01 1 159828569 159828572 CTCG - VSIG8 Frame_Shift_Del p.E61Gfs*53 0.36 TCGA-CJ-5672-01 1 196684863 196684863 G A CFH Missense_Mutation p.G554S 0.15 tolerated(0.18) benign(0.12) TCGA-CJ-5672-01 1 2116266 2116266 C T C1orf86 3'Flank 0.21 TCGA-CJ-5672-01 1 235969775 235969775 C T LYST Silent p.K887K 0.28 TCGA-CJ-5672-01 1 35579833 35579833 A C ZMYM1 Missense_Mutation p.K801T 0.13 tolerated(0.08) benign(0.424) TCGA-CJ-5672-01 1 70518807 70518807 T C LRRC7 Silent p.P1365P 0.19 TCGA-CJ-5672-01 20 13750637 13750637 A G ESF1 Silent p.D478D 0.25 TCGA-CJ-5672-01 20 24930131 24930131 C - CST7 5'UTR 0.26 TCGA-CJ-5672-01 20 31958402 31958402 A T CDK5RAP1 Missense_Mutation p.F432Y 0.15 deleterious(0) probably_damaging(0.933) TCGA-CJ-5672-01 20 34459576 34459576 G T PHF20 Missense_Mutation p.Q369H 0.27 deleterious(0.04) benign(0.002) TCGA-CJ-5672-01 20 60754289 60754289 C A SS18L1 3'UTR 0.26 TCGA-CJ-5672-01 21 47850087 47850087 G A PCNT Silent p.Q2618Q 0.32 TCGA-CJ-5672-01 22 29763218 29763218 T - AP1B1 Frame_Shift_Del p.K5Nfs*14 0.11 TCGA-CJ-5672-01 2 132021772 132021772 A G POTEE Missense_Mutation p.K915R 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-CJ-5672-01 2 142888338 142888338 C A LRP1B 5'UTR 0.14 TCGA-CJ-5672-01 2 158182140 158182140 C T ERMN Silent p.P18P 0.20 TCGA-CJ-5672-01 2 160080760 160080760 G A TANC1 Silent p.E1232E 0.29 TCGA-CJ-5672-01 2 197184391 197184391 G A HECW2 Missense_Mutation p.P408L 0.12 tolerated_low_confidence(0.15) benign(0.058) TCGA-CJ-5672-01 2 198257832 198257832 G A SF3B1 Missense_Mutation p.S1207L 0.18 deleterious(0.02) benign(0.004) TCGA-CJ-5672-01 2 206580920 206580920 T C NRP2 Silent p.Y85Y 0.29 TCGA-CJ-5672-01 2 219557312 219557312 C T STK36 Missense_Mutation p.P641L 0.12 tolerated(0.32) benign(0.003) TCGA-CJ-5672-01 2 219888914 219888914 C A CCDC108 Missense_Mutation p.K806N 0.17 tolerated(0.09) benign(0.001) TCGA-CJ-5672-01 2 220072990 220072990 C A ZFAND2B Silent p.I149I 0.21 TCGA-CJ-5672-01 2 27565792 27565792 G A GTF3C2 Missense_Mutation p.S157L 0.42 deleterious(0) possibly_damaging(0.68) TCGA-CJ-5672-01 2 45616439 45616439 C T SRBD1 3'UTR 0.20 TCGA-CJ-5672-01 2 65316108 65316108 T C RAB1A Missense_Mutation p.T129A 0.21 tolerated(0.29) benign(0.002) TCGA-CJ-5672-01 2 69177365 69177365 C A GKN2 Missense_Mutation p.G33C 0.12 deleterious(0) probably_damaging(0.988) TCGA-CJ-5672-01 2 73315745 73315745 G A RAB11FIP5 Missense_Mutation p.S334F 0.33 deleterious(0) possibly_damaging(0.766) TCGA-CJ-5672-01 2 73868603 73868603 G A NAT8 Silent p.L51L 0.13 TCGA-CJ-5672-01 2 73900989 73900989 G A ALMS1P RNA 0.10 TCGA-CJ-5672-01 2 97427956 97427956 G A CNNM4 Missense_Mutation p.R407H 0.41 deleterious(0) probably_damaging(0.989) TCGA-CJ-5672-01 3 10191648 10191648 G T VHL Nonstop_Mutation p.*214Lext*14 0.34 TCGA-CJ-5672-01 3 119393997 119393997 C A COX17 Nonstop_Mutation p.*64Lext*8 0.25 TCGA-CJ-5672-01 3 130174477 130174477 C A COL6A5 Missense_Mutation p.Q2253K 0.26 tolerated(0.34) benign(0.002) TCGA-CJ-5672-01 3 156175241 156175241 G T KCNAB1 Splice_Site p.X120_splice 0.26 TCGA-CJ-5672-01 3 168833688 168833688 C A MECOM Missense_Mutation p.V535L 0.26 tolerated(0.07) probably_damaging(0.997) TCGA-CJ-5672-01 3 25636158 25636158 T C RARB Missense_Mutation p.I380T 0.35 deleterious(0) probably_damaging(0.998) TCGA-CJ-5672-01 3 53139761 53139761 T C RFT1 Silent p.P295P 0.31 TCGA-CJ-5672-01 3 58416621 58416621 G A PDHB Nonsense_Mutation p.Q118* 0.22 TCGA-CJ-5672-01 4 123664977 123664977 A C BBS12 Missense_Mutation p.N644H 0.25 tolerated(0.17) possibly_damaging(0.873) TCGA-CJ-5672-01 4 186548090 186548090 C T SORBS2 Missense_Mutation p.S373N 0.33 tolerated(1) benign(0.005) TCGA-CJ-5672-01 4 47538910 47538925 CGAAGATGTAGTGTGG - ATP10D Frame_Shift_Del p.R451Qfs*28 0.18 TCGA-CJ-5672-01 4 79308552 79308552 A T FRAS1 Missense_Mutation p.E1224D 0.16 benign(0.186) TCGA-CJ-5672-01 5 138261073 138261073 A C CTNNA1 Silent p.R626R 0.12 TCGA-CJ-5672-01 5 140481311 140481311 T G PCDHB3 Missense_Mutation p.S360A 0.16 tolerated_low_confidence(0.36) benign(0.007) TCGA-CJ-5672-01 5 150701632 150701632 A G SLC36A2 Silent p.I385I 0.38 TCGA-CJ-5672-01 5 178309752 178309752 A T ZNF354B Missense_Mutation p.Q100L 0.48 tolerated(0.16) benign(0.131) TCGA-CJ-5672-01 6 10556537 10556538 - C GCNT2 Intron 0.21 TCGA-CJ-5672-01 6 114383925 114383925 C T HS3ST5 Missense_Mutation p.A29T 0.17 deleterious_low_confidence(0.02) probably_damaging(0.959) TCGA-CJ-5672-01 6 133844277 133844277 C T EYA4 Missense_Mutation p.A567V 0.11 tolerated(1) benign(0.003) TCGA-CJ-5672-01 6 136923035 136923035 G C MAP3K5 Missense_Mutation p.P921R 0.13 deleterious(0) probably_damaging(1) TCGA-CJ-5672-01 6 26158449 26158450 - CCA HIST1H2BD In_Frame_Ins p.A18_V19insT 0.10 TCGA-CJ-5672-01 6 31752061 31752061 G A VARS Missense_Mutation p.A534V 0.14 deleterious(0) probably_damaging(0.991) TCGA-CJ-5672-01 6 7883469 7883469 G A TXNDC5 Nonsense_Mutation p.R403* 0.27 TCGA-CJ-5672-01 7 117180383 117180383 G A CFTR Missense_Mutation p.A367T 0.24 tolerated(0.26) benign(0.074) TCGA-CJ-5672-01 7 21469813 21469813 A G SP4 Missense_Mutation p.T344A 0.17 tolerated(0.31) benign(0) TCGA-CJ-5672-01 7 2583291 2583291 A T BRAT1 Missense_Mutation p.C246S 0.25 tolerated(1) benign(0.002) TCGA-CJ-5672-01 7 44664056 44664056 G T OGDH Silent p.R38R 0.13 TCGA-CJ-5672-01 7 73118169 73118169 G A STX1A Intron 0.13 TCGA-CJ-5672-01 7 93535945 93535945 A G GNGT1 5'UTR 0.14 TCGA-CJ-5672-01 8 95531232 95531232 A G KIAA1429 Missense_Mutation p.Y832H 0.55 tolerated(0.54) benign(0.024) TCGA-CJ-5672-01 8 95538745 95538745 T G KIAA1429 Missense_Mutation p.K576T 0.52 tolerated(0.42) benign(0.021) TCGA-CJ-5672-01 9 113312161 113312161 A G SVEP1 Missense_Mutation p.F252S 0.11 probably_damaging(0.984) TCGA-CJ-5672-01 9 124072995 124072995 G A GSN Missense_Mutation p.V180I 0.22 tolerated(0.21) benign(0.001) TCGA-CJ-5672-01 9 22451073 22451073 G T DMRTA1 Missense_Mutation p.E226D 0.18 tolerated(0.56) benign(0.054) TCGA-CJ-5672-01 9 33917910 33917912 GAG - UBE2R2 3'UTR 0.09 TCGA-CJ-5672-01 9 34724109 34724109 A G FAM205A Missense_Mutation p.M1043T 0.29 tolerated(1) benign(0.001) TCGA-CJ-5672-01 9 91994191 91994191 A G SEMA4D Silent p.L673L 0.11 TCGA-CJ-5672-01 X 105970595 105970595 C - RNF128 Frame_Shift_Del p.R152Afs*13 0.55 TCGA-CJ-5672-01 X 148797543 148797543 C A MAGEA11 Missense_Mutation p.L133M 0.64 tolerated(0.07) benign(0.129) TCGA-CJ-5672-01 X 152721103 152721103 T C HAUS7 Missense_Mutation p.Y286C 0.45 tolerated(0.05) benign(0.275) TCGA-CJ-5672-01 X 23874429 23874429 T A APOO Missense_Mutation p.N184I 0.54 deleterious(0.01) possibly_damaging(0.646) TCGA-CJ-5672-01 X 55286975 55286975 G C PAGE3 Missense_Mutation p.P104R 0.51 tolerated(0.1) probably_damaging(0.983) TCGA-CJ-5672-01 X 70603945 70603945 A G TAF1 Missense_Mutation p.Q714R 0.50 deleterious(0) probably_damaging(0.993) TCGA-CJ-5672-01 Y 14850172 14850172 A T USP9Y Nonsense_Mutation p.K416* 0.29 TCGA-CJ-5675-01 10 75567375 75567375 G A NDST2 Missense_Mutation p.R258C 0.21 deleterious(0.05) possibly_damaging(0.806) TCGA-CJ-5675-01 10 90122392 90122392 A G RNLS Missense_Mutation p.I206T 0.21 deleterious(0.01) benign(0.046) TCGA-CJ-5675-01 11 105880163 105880163 G C MSANTD4 3'UTR 0.08 TCGA-CJ-5675-01 11 18158742 18158742 T G MRGPRX3 5'UTR 0.20 TCGA-CJ-5675-01 11 47299728 47299730 CCA - MADD In_Frame_Del p.P370del 0.24 TCGA-CJ-5675-01 11 67191044 67191044 C A CARNS1 Missense_Mutation p.Q609K 0.10 tolerated(0.35) benign(0.009) TCGA-CJ-5675-01 11 86097136 86097136 G T CCDC81 Silent p.R41R 0.25 TCGA-CJ-5675-01 11 86097137 86097137 C T CCDC81 Nonsense_Mutation p.Q42* 0.25 TCGA-CJ-5675-01 12 22063879 22063879 C A ABCC9 Nonsense_Mutation p.E349* 0.06 TCGA-CJ-5675-01 12 56118367 56118367 A G RDH5 3'UTR 0.10 TCGA-CJ-5675-01 12 89917147 89917147 A T GALNT4 Missense_Mutation p.F394I 0.24 deleterious(0.02) possibly_damaging(0.637) TCGA-CJ-5675-01 13 21729086 21729086 G A SKA3 3'UTR 0.20 TCGA-CJ-5675-01 13 41706026 41706026 A C KBTBD6 Missense_Mutation p.S208A 0.19 tolerated(0.57) benign(0.013) TCGA-CJ-5675-01 13 73336063 73336063 T G DIS3 Missense_Mutation p.R780S 0.26 deleterious(0) probably_damaging(1) TCGA-CJ-5675-01 14 94467512 94467512 C T LINC00521 RNA 0.22 TCGA-CJ-5675-01 15 30064288 30064288 T G TJP1 Missense_Mutation p.K97N 0.27 tolerated(0.13) benign(0.268) TCGA-CJ-5675-01 16 2809006 2809006 C T SRRM2 Missense_Mutation p.P205L 0.23 unknown(0) TCGA-CJ-5675-01 16 50701972 50701972 A G SNX20 3'Flank 0.26 TCGA-CJ-5675-01 16 64981780 64981780 G A CDH11 Missense_Mutation p.P706L 0.25 tolerated(0.41) probably_damaging(0.913) TCGA-CJ-5675-01 16 72993014 72993014 T A ZFHX3 Missense_Mutation p.N344I 0.21 benign(0.307) TCGA-CJ-5675-01 17 27052361 27052361 C G TLCD1 Missense_Mutation p.Q107H 0.21 tolerated(0.46) probably_damaging(0.978) TCGA-CJ-5675-01 17 35295520 35295520 G - LHX1 Frame_Shift_Del p.R9Sfs*9 0.23 TCGA-CJ-5675-01 17 41903162 41903162 C G MPP3 Missense_Mutation p.V191L 0.06 tolerated(0.19) possibly_damaging(0.718) TCGA-CJ-5675-01 17 43173564 43173564 A C NMT1 Silent p.L169L 0.26 TCGA-CJ-5675-01 17 43246657 43246657 A G HEXIM2 Silent p.Q114Q 0.11 TCGA-CJ-5675-01 17 73927360 73927360 C A FBF1 Missense_Mutation p.G46C 0.18 deleterious(0) possibly_damaging(0.719) TCGA-CJ-5675-01 17 76496602 76496602 T - DNAH17-AS1 3'UTR 0.11 TCGA-CJ-5675-01 18 20814600 20814600 T C CABLES1 Missense_Mutation p.S373P 0.22 tolerated(0.09) benign(0.015) TCGA-CJ-5675-01 18 72346773 72346773 T C ZNF407 Silent p.V1266V 0.26 TCGA-CJ-5675-01 19 12089265 12089265 G A ZNF763 Missense_Mutation p.E179K 0.29 tolerated(0.12) possibly_damaging(0.614) TCGA-CJ-5675-01 19 14034594 14034594 G A CC2D1A Missense_Mutation p.R637H 0.19 tolerated(1) benign(0.008) TCGA-CJ-5675-01 19 1510897 1510897 G - ADAMTSL5 Frame_Shift_Del p.L16Sfs*9 0.12 TCGA-CJ-5675-01 19 40376809 40376809 C T FCGBP Silent p.G3871G 0.14 TCGA-CJ-5675-01 19 54744735 54744735 G A LILRA6 Silent p.P309P 0.16 TCGA-CJ-5675-01 19 58386268 58386268 G T ZNF814 Missense_Mutation p.H164N 0.25 tolerated(0.08) benign(0.157) TCGA-CJ-5675-01 1 153946103 153946103 T A CREB3L4 Missense_Mutation p.L302H 0.50 deleterious(0) probably_damaging(0.977) TCGA-CJ-5675-01 1 154471630 154471630 C T SHE Missense_Mutation p.D226N 0.03 tolerated(0.14) probably_damaging(0.983) TCGA-CJ-5675-01 1 161953786 161953786 C G OLFML2B Missense_Mutation p.E644D 0.45 deleterious(0) probably_damaging(0.999) TCGA-CJ-5675-01 1 16577186 16577186 G C FBXO42 Nonsense_Mutation p.Y711* 0.21 TCGA-CJ-5675-01 1 183187561 183187561 A G LAMC2 Silent p.A147A 0.10 TCGA-CJ-5675-01 1 202097558 202097558 C T GPR37L1 Silent p.G440G 0.53 TCGA-CJ-5675-01 1 220789331 220789331 T A MARK1 Missense_Mutation p.D182E 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-CJ-5675-01 1 248129529 248129529 T C OR2AK2 Missense_Mutation p.L299P 0.06 deleterious(0) probably_damaging(0.968) TCGA-CJ-5675-01 1 31347255 31347255 G A SDC3 Missense_Mutation p.P351S 0.25 tolerated(0.12) unknown(0) TCGA-CJ-5675-01 1 34238249 34238249 G A CSMD2 Silent p.P549P 0.30 TCGA-CJ-5675-01 1 55529175 55529175 G A PCSK9 Missense_Mutation p.S666N 0.28 tolerated(0.49) benign(0.001) TCGA-CJ-5675-01 1 68947267 68947267 A C DEPDC1 Silent p.V597V 0.04 TCGA-CJ-5675-01 20 23966339 23966339 G A GGTLC1 Missense_Mutation p.P166S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-CJ-5675-01 20 3278767 3278767 G C C20orf194 Missense_Mutation p.P613R 0.22 tolerated(0.05) probably_damaging(0.973) TCGA-CJ-5675-01 20 44692013 44692013 G A NCOA5 Missense_Mutation p.T379I 0.27 tolerated(0.22) benign(0.23) TCGA-CJ-5675-01 20 896633 896633 G A ANGPT4 Silent p.N75N 0.22 TCGA-CJ-5675-01 21 28337626 28337626 G A ADAMTS5 Missense_Mutation p.A362V 0.26 deleterious(0) probably_damaging(0.972) TCGA-CJ-5675-01 22 44645504 44645504 G T KIAA1644 3'UTR 0.05 TCGA-CJ-5675-01 2 165948825 165948825 G C SCN3A Missense_Mutation p.H1582Q 0.10 tolerated(0.33) benign(0.003) TCGA-CJ-5675-01 2 167137006 167137006 T - SCN9A Frame_Shift_Del p.K724Sfs*7 0.20 TCGA-CJ-5675-01 2 198436607 198436607 A T RFTN2 3'UTR 0.14 TCGA-CJ-5675-01 2 20138115 20138115 C G WDR35 Silent p.R669R 0.07 TCGA-CJ-5675-01 3 122247559 122247559 G C PARP9 Silent p.T739T 0.23 TCGA-CJ-5675-01 3 126733641 126733641 C A PLXNA1 Nonsense_Mutation p.Y948* 0.30 TCGA-CJ-5675-01 3 132409424 132409424 T G NPHP3 Missense_Mutation p.K881Q 0.28 tolerated(0.29) benign(0.011) TCGA-CJ-5675-01 3 138724479 138724479 G A PRR23A Missense_Mutation p.S211F 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-CJ-5675-01 3 42680080 42680080 G T NKTR Missense_Mutation p.G962W 0.31 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CJ-5675-01 3 49153046 49153046 G T USP19 Silent p.P571P 0.07 TCGA-CJ-5675-01 3 5215726 5215726 G C ARL8B Missense_Mutation p.D133H 0.23 deleterious(0) probably_damaging(0.911) TCGA-CJ-5675-01 3 52584515 52584515 A - PBRM1 Frame_Shift_Del p.S1500Qfs*5 0.36 TCGA-CJ-5675-01 4 109004590 109004590 T G LEF1 Missense_Mutation p.H187P 0.23 tolerated(1) possibly_damaging(0.864) TCGA-CJ-5675-01 4 4303969 4303969 C T ZBTB49 Silent p.L136L 0.17 TCGA-CJ-5675-01 4 99397581 99397581 C T TSPAN5 Missense_Mutation p.D203N 0.31 deleterious(0.03) possibly_damaging(0.827) TCGA-CJ-5675-01 5 16674991 16674991 A G MYO10 Silent p.I1645I 0.25 TCGA-CJ-5675-01 5 178548695 178548695 C G ADAMTS2 Missense_Mutation p.D1049H 0.13 tolerated(0.06) possibly_damaging(0.863) TCGA-CJ-5675-01 5 33881335 33881335 G C ADAMTS12 Silent p.L126L 0.27 TCGA-CJ-5675-01 5 43446548 43446548 A T C5orf28 Missense_Mutation p.C142S 0.19 tolerated(0.56) benign(0.003) TCGA-CJ-5675-01 5 54569200 54569201 - TA DHX29 Frame_Shift_Ins p.K899Ifs*3 0.18 TCGA-CJ-5675-01 5 66460450 66460450 G A MAST4 Missense_Mutation p.A1815T 0.24 benign(0.108) TCGA-CJ-5675-01 6 135254009 135254009 G T ALDH8A1 Missense_Mutation p.L252M 0.22 deleterious(0.01) probably_damaging(1) TCGA-CJ-5675-01 6 31598498 31598498 C A PRRC2A Silent p.V795V 0.27 TCGA-CJ-5675-01 6 37606075 37606075 C T MDGA1 Silent p.G894G 0.38 TCGA-CJ-5675-01 6 54806400 54806400 C G FAM83B Missense_Mutation p.F877L 0.30 tolerated(0.23) benign(0.006) TCGA-CJ-5675-01 7 100211260 100211260 C T MOSPD3 Missense_Mutation p.P148S 0.21 tolerated(0.31) benign(0.002) TCGA-CJ-5675-01 7 138417832 138417832 G A ATP6V0A4 Silent p.F566F 0.20 TCGA-CJ-5675-01 7 66103318 66103318 C G KCTD7 Nonsense_Mutation p.Y131* 0.33 TCGA-CJ-5675-01 7 94919499 94919499 A - PPP1R9A Frame_Shift_Del p.M1338Wfs*8 0.19 TCGA-CJ-5675-01 8 131916170 131916170 T G ADCY8 Missense_Mutation p.I587L 0.27 deleterious(0.01) benign(0.441) TCGA-CJ-5675-01 8 133141908 133141908 C T KCNQ3 Silent p.T740T 0.37 TCGA-CJ-5675-01 8 144995868 144995868 A G PLEC Silent p.N2844N 0.31 TCGA-CJ-5675-01 8 71068322 71068322 G T NCOA2 Missense_Mutation p.P760T 0.24 tolerated(0.08) benign(0.372) TCGA-CJ-5675-01 9 131019492 131019492 G T GOLGA2 Missense_Mutation p.R955S 0.09 tolerated(0.78) benign(0.019) TCGA-CJ-5675-01 9 136577831 136577831 C G SARDH Missense_Mutation p.G413A 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-CJ-5675-01 9 33443723 33443724 - TT AQP3 Intron 0.29 TCGA-CJ-5675-01 X 142967736 142967736 A T UBE2NL 3'UTR 0.09 TCGA-CJ-5675-01 X 151909301 151909301 G A CSAG1 3'UTR 0.58 TCGA-CJ-5675-01 X 17819773 17819773 C T RAI2 Missense_Mutation p.V120M 0.48 deleterious(0.02) probably_damaging(0.991) TCGA-CJ-5675-01 X 322172 322172 C - PPP2R3B Frame_Shift_Del p.A160Pfs*63 0.33 TCGA-CJ-5675-01 X 54785277 54785277 G A ITIH6 Silent p.I410I 0.44 TCGA-CJ-5676-01 10 101180433 101180433 C - GOT1 Frame_Shift_Del p.C83Lfs*19 0.12 TCGA-CJ-5676-01 10 50960187 50960187 G A OGDHL Missense_Mutation p.R196C 0.15 deleterious(0) possibly_damaging(0.776) TCGA-CJ-5676-01 11 101984953 101984953 T C YAP1 Silent p.L134L 0.10 TCGA-CJ-5676-01 11 108382795 108382795 T A EXPH5 Missense_Mutation p.M1147L 0.15 tolerated(0.51) benign(0.017) TCGA-CJ-5676-01 11 113078566 113078566 A T NCAM1 Missense_Mutation p.Q312L 0.04 tolerated(0.32) benign(0) TCGA-CJ-5676-01 11 43852783 43852783 T C HSD17B12 Intron 0.25 TCGA-CJ-5676-01 11 49168304 49168304 C T FOLH1 3'UTR 0.12 TCGA-CJ-5676-01 11 5655129 5655129 G C TRIM34 Missense_Mutation p.K173N 0.30 deleterious(0) possibly_damaging(0.764) TCGA-CJ-5676-01 11 62290074 62290074 T A AHNAK Nonsense_Mutation p.K3939* 0.30 TCGA-CJ-5676-01 12 130839159 130839159 G T PIWIL1 Silent p.G374G 0.32 TCGA-CJ-5676-01 12 56395974 56395974 T C SUOX 5'UTR 0.20 TCGA-CJ-5676-01 12 57861144 57861144 G T GLI1 Missense_Mutation p.R314L 0.18 deleterious(0) probably_damaging(0.988) TCGA-CJ-5676-01 12 6806817 6806817 C T PIANP Silent p.S53S 0.40 TCGA-CJ-5676-01 12 7064112 7064112 C - PTPN6 Frame_Shift_Del p.P158Qfs*61 0.21 TCGA-CJ-5676-01 12 78401106 78401106 C T NAV3 Silent p.S596S 0.24 TCGA-CJ-5676-01 13 103275383 103275383 C T TPP2 Silent p.T259T 0.29 TCGA-CJ-5676-01 15 41279359 41279359 G A INO80 Silent p.F1254F 0.29 TCGA-CJ-5676-01 15 64200798 64200798 C A DAPK2 Missense_Mutation p.R345M 0.41 deleterious(0) possibly_damaging(0.687) TCGA-CJ-5676-01 15 65386873 65386873 C A UBAP1L Missense_Mutation p.Q317H 0.33 tolerated(0.05) probably_damaging(0.932) TCGA-CJ-5676-01 15 93467668 93467668 T - CHD2 Frame_Shift_Del p.E61Rfs*33 0.14 TCGA-CJ-5676-01 16 3641170 3641170 C T SLX4 Nonsense_Mutation p.W823* 0.10 TCGA-CJ-5676-01 16 84229248 84229248 G T ADAD2 Missense_Mutation p.V415F 0.30 deleterious(0.03) benign(0.068) TCGA-CJ-5676-01 17 16631046 16631046 C T CCDC144A Silent p.Y699Y 0.04 TCGA-CJ-5676-01 17 39471719 39471719 A T KRTAP17-1 Missense_Mutation p.C62S 0.20 unknown(0) TCGA-CJ-5676-01 17 58091725 58091725 T C TBC1D3P1-DHX40P1 RNA 0.10 TCGA-CJ-5676-01 17 59557596 59557596 C A TBX4 Missense_Mutation p.L313I 0.41 tolerated(0.4) benign(0.022) TCGA-CJ-5676-01 17 62228234 62228234 G A TEX2 Silent p.D1083D 0.14 TCGA-CJ-5676-01 17 74563616 74563616 C G ST6GALNAC2 Missense_Mutation p.L292F 0.28 possibly_damaging(0.836) TCGA-CJ-5676-01 1 104116348 104116348 G A AMY2B Missense_Mutation p.V178I 0.19 deleterious(0.04) benign(0.052) TCGA-CJ-5676-01 1 113460278 113460279 - T SLC16A1 Frame_Shift_Ins p.N250Kfs*36 0.12 TCGA-CJ-5676-01 1 11894362 11894362 G T CLCN6 Silent p.G532G 0.18 TCGA-CJ-5676-01 1 120307055 120307055 T A HMGCS2 Missense_Mutation p.E100V 0.37 deleterious(0) probably_damaging(1) TCGA-CJ-5676-01 1 161599827 161599827 T G FCGR3B Splice_Site p.X57_splice 0.29 TCGA-CJ-5676-01 1 16719814 16719814 A G SZRD1 Missense_Mutation p.R65G 0.09 deleterious(0) benign(0.011) TCGA-CJ-5676-01 1 167663406 167663406 T A RCSD1 Missense_Mutation p.M114K 0.35 tolerated(0.08) benign(0.03) TCGA-CJ-5676-01 1 186310211 186310211 T G TPR Silent p.A1323A 0.17 TCGA-CJ-5676-01 1 34677961 34677961 C G C1orf94 Missense_Mutation p.L559V 0.09 deleterious(0.03) benign(0.001) TCGA-CJ-5676-01 1 50956260 50956260 C T FAF1 Silent p.E551E 0.34 TCGA-CJ-5676-01 1 95360437 95360437 A G SLC44A3 Missense_Mutation p.R641G 0.15 tolerated(0.41) benign(0.001) TCGA-CJ-5676-01 20 207960 207960 C T DEFB129 Missense_Mutation p.L11F 0.24 deleterious(0.04) probably_damaging(0.997) TCGA-CJ-5676-01 20 57561823 57561823 G A NELFCD Missense_Mutation p.G82E 0.22 deleterious(0) probably_damaging(0.997) TCGA-CJ-5676-01 20 62373400 62373400 A G SLC2A4RG Silent p.R190R 0.09 TCGA-CJ-5676-01 21 46353962 46353962 G T C21orf67 3'Flank 0.12 TCGA-CJ-5676-01 21 46689908 46689908 G A POFUT2 Silent p.G286G 0.33 TCGA-CJ-5676-01 22 24906778 24906778 A G UPB1 Silent p.A142A 0.08 TCGA-CJ-5676-01 22 24938958 24938958 C T GUCD1 3'UTR 0.31 TCGA-CJ-5676-01 22 38349736 38349736 C A POLR2F 5'UTR 0.37 TCGA-CJ-5676-01 2 112630631 112630631 A G ANAPC1 Intron 0.38 TCGA-CJ-5676-01 2 11706655 11706655 G A GREB1 Silent p.E109E 0.27 TCGA-CJ-5676-01 2 128928844 128928844 C A UGGT1 Missense_Mutation p.D1030E 0.26 tolerated(1) benign(0.014) TCGA-CJ-5676-01 2 20403727 20403727 C T SDC1 Silent p.Q158Q 0.34 TCGA-CJ-5676-01 3 10191488 10191488 C T VHL Nonsense_Mutation p.R161* 0.38 TCGA-CJ-5676-01 3 170802027 170802027 T A TNIK Missense_Mutation p.N1029I 0.09 deleterious(0) probably_damaging(0.997) TCGA-CJ-5676-01 3 41504634 41504634 C G ULK4 Missense_Mutation p.D1113H 0.12 deleterious(0) probably_damaging(0.952) TCGA-CJ-5676-01 3 47127736 47127736 C T SETD2 Nonsense_Mutation p.W1782* 0.38 TCGA-CJ-5676-01 3 48485282 48485282 A - TMA7 Frame_Shift_Del p.K64Sfs*19 0.30 TCGA-CJ-5676-01 3 52597493 52597493 G A PBRM1 Nonsense_Mutation p.Q1273* 0.36 TCGA-CJ-5676-01 4 141321553 141321553 T C CLGN Missense_Mutation p.K218E 0.29 tolerated(0.43) benign(0.086) TCGA-CJ-5676-01 4 62800598 62800598 C A LPHN3 Missense_Mutation p.A650D 0.27 deleterious(0.01) benign(0.12) TCGA-CJ-5676-01 4 85611661 85611662 - T WDFY3 Frame_Shift_Ins p.Q3121Tfs*8 0.18 TCGA-CJ-5676-01 5 112228273 112228273 A G ZRSR1 Missense_Mutation p.K313E 0.36 deleterious(0.04) possibly_damaging(0.574) TCGA-CJ-5676-01 5 118502399 118502399 T G DMXL1 Missense_Mutation p.S1687A 0.14 tolerated(0.59) probably_damaging(0.999) TCGA-CJ-5676-01 5 138699475 138699475 T C PAIP2 Translation_Start_Site p.M1? 0.40 deleterious(0) benign(0.227) TCGA-CJ-5676-01 5 150276423 150276423 T C ZNF300 Silent p.K142K 0.36 TCGA-CJ-5676-01 5 150276453 150276453 T C ZNF300 Silent p.T132T 0.38 TCGA-CJ-5676-01 5 154270986 154270986 G A GEMIN5 Silent p.L1359L 0.23 TCGA-CJ-5676-01 5 16818168 16818168 C T MYO10 Missense_Mutation p.G77S 0.09 deleterious(0.01) probably_damaging(1) TCGA-CJ-5676-01 5 33588814 33588814 G T ADAMTS12 Missense_Mutation p.Q919K 0.11 deleterious(0.01) possibly_damaging(0.876) TCGA-CJ-5676-01 5 75914170 75914170 A C F2RL2 Missense_Mutation p.F121C 0.38 tolerated(0.05) possibly_damaging(0.905) TCGA-CJ-5676-01 5 78919207 78919207 G T PAPD4 Missense_Mutation p.L120F 0.07 tolerated(0.43) possibly_damaging(0.668) TCGA-CJ-5676-01 5 89979676 89979677 - T GPR98 Frame_Shift_Ins p.S1982Ffs*2 0.13 TCGA-CJ-5676-01 5 90074272 90074272 A C GPR98 Missense_Mutation p.K4232T 0.30 possibly_damaging(0.727) TCGA-CJ-5676-01 6 144811221 144811221 G A UTRN Silent p.E1383E 0.24 TCGA-CJ-5676-01 6 28054028 28054028 C G ZNF165 Missense_Mutation p.Q164E 0.26 deleterious(0.02) benign(0.001) TCGA-CJ-5676-01 6 35107857 35107857 A - TCP11 Intron 0.29 TCGA-CJ-5676-01 6 43528033 43528033 C T XPO5 Missense_Mutation p.R368H 0.25 deleterious(0.03) possibly_damaging(0.701) TCGA-CJ-5676-01 6 46826546 46826546 C T GPR116 Missense_Mutation p.V1032I 0.28 tolerated(0.87) benign(0.1) TCGA-CJ-5676-01 6 51612746 51612746 G T PKHD1 Nonsense_Mutation p.S3223* 0.32 TCGA-CJ-5676-01 7 100677624 100677624 C T MUC17 Missense_Mutation p.S976L 0.05 probably_damaging(0.974) TCGA-CJ-5676-01 7 90356089 90356089 A T CDK14 Missense_Mutation p.E93V 0.19 tolerated(0.09) possibly_damaging(0.895) TCGA-CJ-5676-01 8 8749447 8749447 G T MFHAS1 Missense_Mutation p.D374E 0.12 tolerated(0.22) probably_damaging(0.917) TCGA-CJ-5676-01 9 131587284 131587284 A T C9orf114 Silent p.T228T 0.11 TCGA-CJ-5676-01 9 35826098 35826098 G C FAM221B Missense_Mutation p.P21A 0.32 deleterious(0.03) benign(0.004) TCGA-CJ-5676-01 9 5126444 5126444 G T JAK2 Nonsense_Mutation p.E1097* 0.30 TCGA-CJ-5676-01 X 69622483 69622483 C T KIF4A Missense_Mutation p.R853C 0.14 tolerated(0.06) benign(0.003) TCGA-CJ-5676-01 X 84342599 84342602 CAAC - APOOL Frame_Shift_Del p.T242Sfs*19 0.60 TCGA-CJ-5676-01 X 9621602 9621602 C T TBL1X 5'UTR 0.41 TCGA-CJ-5677-01 10 102684302 102684302 C G FAM178A Missense_Mutation p.S515C 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CJ-5677-01 10 84745303 84745303 G A NRG3 Missense_Mutation p.R678Q 0.31 tolerated_low_confidence(0.1) benign(0.118) TCGA-CJ-5677-01 11 114442140 114442140 C A NXPE4 Silent p.V385V 0.31 TCGA-CJ-5677-01 11 124564181 124564203 TTTCTCCTTTCGATGAAGGACTC - SPA17 Splice_Site p.X105_splice 0.15 TCGA-CJ-5677-01 11 18636132 18636132 T G SPTY2D1 Silent p.L563L 0.29 TCGA-CJ-5677-01 11 18764949 18764949 C T PTPN5 Missense_Mutation p.G107S 0.23 tolerated_low_confidence(0.06) benign(0.029) TCGA-CJ-5677-01 11 208842 208842 T C RIC8A 5'UTR 0.19 TCGA-CJ-5677-01 11 30926700 30926700 C T DCDC1 Silent p.S1372S 0.26 TCGA-CJ-5677-01 12 14796510 14796510 T C GUCY2C Missense_Mutation p.K643R 0.06 tolerated(0.27) benign(0.015) TCGA-CJ-5677-01 12 44915937 44915937 C T NELL2 Missense_Mutation p.R724Q 0.22 tolerated(0.06) probably_damaging(0.986) TCGA-CJ-5677-01 12 56397616 56397616 T C SUOX Missense_Mutation p.V148A 0.33 deleterious(0) possibly_damaging(0.821) TCGA-CJ-5677-01 12 970307 970307 G T WNK1 Missense_Mutation p.K583N 0.07 deleterious(0) unknown(0) TCGA-CJ-5677-01 13 51943326 51943326 G T INTS6 Missense_Mutation p.A742D 0.21 tolerated(0.63) benign(0) TCGA-CJ-5677-01 14 31817065 31817065 G A HEATR5A Silent p.A626A 0.27 TCGA-CJ-5677-01 15 100269225 100269225 T C LYSMD4 3'UTR 0.23 TCGA-CJ-5677-01 15 102312066 102312066 G C RN7SL209P 3'Flank 0.45 TCGA-CJ-5677-01 16 28845832 28845832 C A ATXN2L Missense_Mutation p.L751I 0.25 deleterious(0.04) benign(0.316) TCGA-CJ-5677-01 16 71679621 71679621 T C PHLPP2 3'UTR 0.13 TCGA-CJ-5677-01 17 15952284 15952284 T G NCOR1 Silent p.P2137P 0.33 TCGA-CJ-5677-01 17 48918195 48918195 C G WFIKKN2 Missense_Mutation p.P516A 0.35 deleterious(0) probably_damaging(1) TCGA-CJ-5677-01 17 7577097 7577097 C A TP53 Missense_Mutation p.D281Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-CJ-5677-01 17 79204474 79204474 G A ENTHD2 Missense_Mutation p.A300V 0.27 tolerated(0.06) benign(0.118) TCGA-CJ-5677-01 17 80765530 80765530 G A TBCD Nonsense_Mutation p.W378* 0.24 TCGA-CJ-5677-01 19 19021795 19021795 G A COPE Missense_Mutation p.A92V 0.29 deleterious(0.02) benign(0.042) TCGA-CJ-5677-01 19 3783901 3783901 C T MATK Missense_Mutation p.D166N 0.23 tolerated(0.2) possibly_damaging(0.512) TCGA-CJ-5677-01 19 4013124 4013124 G A PIAS4 Silent p.P77P 0.40 TCGA-CJ-5677-01 19 40829950 40829950 C T C19orf47 Missense_Mutation p.G246D 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-CJ-5677-01 19 53321205 53321205 G C ZNF28 Missense_Mutation p.L3V 0.30 tolerated(0.11) probably_damaging(0.967) TCGA-CJ-5677-01 19 54313326 54313326 G A NLRP12 Silent p.D529D 0.23 TCGA-CJ-5677-01 19 7509264 7509264 G A ARHGEF18 Missense_Mutation p.R324H 0.22 deleterious(0) probably_damaging(1) TCGA-CJ-5677-01 19 7598652 7598662 TCGGAGGAGCA - MCOLN1 Frame_Shift_Del p.S572Ffs*32 0.29 TCGA-CJ-5677-01 1 1021312 1021312 A C C1orf159 Missense_Mutation p.F131V 0.16 deleterious(0) possibly_damaging(0.582) TCGA-CJ-5677-01 1 111146166 111146166 G C KCNA2 Missense_Mutation p.F413L 0.27 deleterious(0.01) probably_damaging(0.913) TCGA-CJ-5677-01 1 154313463 154313463 T G ATP8B2 Missense_Mutation p.F423V 0.22 deleterious(0) possibly_damaging(0.543) TCGA-CJ-5677-01 1 154918597 154918597 T G PBXIP1 Missense_Mutation p.K518T 0.28 deleterious(0.01) possibly_damaging(0.629) TCGA-CJ-5677-01 1 17264218 17264218 A G CROCC Missense_Mutation p.K426E 0.18 possibly_damaging(0.79) TCGA-CJ-5677-01 1 19447690 19447690 C T UBR4 Silent p.E3378E 0.28 TCGA-CJ-5677-01 1 222717069 222717069 C T HHIPL2 Missense_Mutation p.V262M 0.27 deleterious(0) probably_damaging(0.998) TCGA-CJ-5677-01 1 240070801 240070801 G C CHRM3 Missense_Mutation p.S17T 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.48) TCGA-CJ-5677-01 1 24022342 24022342 A T RPL11 Missense_Mutation p.I151F 0.27 tolerated(0.06) benign(0.195) TCGA-CJ-5677-01 1 243328076 243328076 C G CEP170 Missense_Mutation p.E1062D 0.12 tolerated(0.29) benign(0.05) TCGA-CJ-5677-01 1 248112511 248112511 G A OR2L8 Missense_Mutation p.A118T 0.23 deleterious(0.02) possibly_damaging(0.627) TCGA-CJ-5677-01 1 248263038 248263038 C T OR2L13 Missense_Mutation p.R121C 0.07 deleterious(0.01) possibly_damaging(0.88) TCGA-CJ-5677-01 1 33612891 33612891 A G TRIM62 Missense_Mutation p.Y439H 0.37 tolerated(0.9) probably_damaging(0.997) TCGA-CJ-5677-01 1 70697699 70697699 A G SRSF11 Intron 0.23 TCGA-CJ-5677-01 1 85486913 85486913 T - MCOLN3 Frame_Shift_Del p.N456Mfs*18 0.25 TCGA-CJ-5677-01 22 29456415 29456415 T C C22orf31 Silent p.G140G 0.26 TCGA-CJ-5677-01 2 100210705 100210705 T - AFF3 Frame_Shift_Del p.N498Tfs*11 0.33 TCGA-CJ-5677-01 2 128480195 128480195 A - WDR33 Frame_Shift_Del p.Y496* 0.21 TCGA-CJ-5677-01 2 179482120 179482120 G T TTN Silent p.R15898R 0.05 TCGA-CJ-5677-01 2 20101646 20101646 T A TTC32 5'UTR 0.27 TCGA-CJ-5677-01 2 20101652 20101652 T A TTC32 5'UTR 0.28 TCGA-CJ-5677-01 2 203818776 203818776 T G CARF Missense_Mutation p.V159G 0.35 tolerated_low_confidence(0.22) benign(0.005) TCGA-CJ-5677-01 2 220073018 220073018 A G ZFAND2B Missense_Mutation p.S159G 0.19 tolerated(0.18) benign(0) TCGA-CJ-5677-01 2 233757610 233757610 C T NGEF Silent p.L380L 0.06 TCGA-CJ-5677-01 2 234749785 234749785 A G HJURP Silent p.N547N 0.10 TCGA-CJ-5677-01 2 33534505 33534505 C T LTBP1 Silent p.I1162I 0.26 TCGA-CJ-5677-01 3 10191479 10191479 C G VHL Missense_Mutation p.L158V 0.38 deleterious(0) possibly_damaging(0.656) TCGA-CJ-5677-01 3 108281998 108281998 G A KIAA1524 Missense_Mutation p.P537S 0.22 tolerated(0.07) benign(0.098) TCGA-CJ-5677-01 3 133302927 133302927 T C CDV3 Silent p.G133G 0.24 TCGA-CJ-5677-01 3 48626394 48626394 C A COL7A1 Missense_Mutation p.Q783H 0.34 unknown(0) TCGA-CJ-5677-01 4 111397499 111397499 A C ENPEP 5'UTR 0.26 TCGA-CJ-5677-01 4 148578942 148578942 C T PRMT10 Splice_Site p.X444_splice 0.23 TCGA-CJ-5677-01 4 39301920 39301920 C T RFC1 Missense_Mutation p.V885I 0.28 deleterious(0) possibly_damaging(0.624) TCGA-CJ-5677-01 4 39482624 39482624 T C LIAS 3'Flank 0.28 TCGA-CJ-5677-01 4 96761886 96761886 C A PDHA2 Silent p.G195G 0.06 TCGA-CJ-5677-01 5 123983986 123983986 C T ZNF608 Missense_Mutation p.M697I 0.25 tolerated(0.14) probably_damaging(0.961) TCGA-CJ-5677-01 5 125939331 125939331 C T PHAX Missense_Mutation p.H56Y 0.11 tolerated(1) benign(0.002) TCGA-CJ-5677-01 5 128984589 128984589 G A ADAMTS19 Nonsense_Mutation p.W695* 0.07 TCGA-CJ-5677-01 5 32089797 32089797 C T PDZD2 Silent p.S2081S 0.48 TCGA-CJ-5677-01 5 78936786 78936786 C T PAPD4 Missense_Mutation p.P193L 0.27 deleterious(0) probably_damaging(0.981) TCGA-CJ-5677-01 6 119522461 119522461 A - MAN1A1 Frame_Shift_Del p.Y390Ifs*5 0.21 TCGA-CJ-5677-01 6 128134336 128134336 C T THEMIS Missense_Mutation p.D484N 0.09 tolerated(0.12) benign(0.004) TCGA-CJ-5677-01 6 33260019 33260019 G T RGL2 Missense_Mutation p.Q732K 0.11 tolerated(1) probably_damaging(0.949) TCGA-CJ-5677-01 6 43304999 43304999 C T ZNF318 Missense_Mutation p.R2246K 0.25 benign(0.015) TCGA-CJ-5677-01 6 45882075 45882076 TC - CLIC5 Frame_Shift_Del p.E318Dfs*2 0.21 TCGA-CJ-5677-01 6 49928062 49928062 G T DEFB114 Silent p.S51S 0.26 TCGA-CJ-5677-01 6 56484970 56484971 AG - DST Intron 0.19 TCGA-CJ-5677-01 6 71234370 71234370 G C FAM135A Missense_Mutation p.S528T 0.31 tolerated(0.18) benign(0.007) TCGA-CJ-5677-01 7 103341421 103341421 G T RELN Missense_Mutation p.P280T 0.04 tolerated(0.16) benign(0.009) TCGA-CJ-5677-01 7 117251654 117251654 T G CFTR Silent p.T1053T 0.08 TCGA-CJ-5677-01 7 44805642 44805642 G A ZMIZ2 Intron 0.23 TCGA-CJ-5677-01 7 50513982 50513982 C T FIGNL1 Missense_Mutation p.G335E 0.28 deleterious(0) probably_damaging(0.909) TCGA-CJ-5677-01 7 57188569 57188569 A T ZNF479 Missense_Mutation p.F185I 0.28 deleterious(0) benign(0.215) TCGA-CJ-5677-01 7 64864567 64864567 T - ZNF92 Frame_Shift_Del p.C514Vfs*16 0.24 TCGA-CJ-5677-01 7 71142217 71142217 G C WBSCR17 Missense_Mutation p.D476H 0.25 tolerated(0.21) benign(0.007) TCGA-CJ-5677-01 7 91924303 91924303 C A ANKIB1 Missense_Mutation p.T4K 0.18 tolerated(0.06) possibly_damaging(0.603) TCGA-CJ-5677-01 8 21956566 21956566 C G FAM160B2 Missense_Mutation p.T358R 0.17 tolerated(0.33) benign(0.175) TCGA-CJ-5677-01 8 30706524 30706524 C A TEX15 Missense_Mutation p.D4Y 0.23 deleterious(0.01) probably_damaging(0.961) TCGA-CJ-5677-01 8 38027383 38027383 G A LSM1 Silent p.Y56Y 0.07 TCGA-CJ-5677-01 8 82357068 82357068 T C PMP2 Missense_Mutation p.D77G 0.05 tolerated(0.08) benign(0.185) TCGA-CJ-5677-01 8 88363919 88363919 T A CNBD1 Missense_Mutation p.V350E 0.05 deleterious(0) probably_damaging(0.991) TCGA-CJ-5677-01 9 131012518 131012518 C T DNM1 Missense_Mutation p.A734V 0.17 deleterious(0.04) possibly_damaging(0.896) TCGA-CJ-5677-01 9 84205823 84205823 C T TLE1 Missense_Mutation p.A576T 0.33 deleterious(0) probably_damaging(1) TCGA-CJ-5677-01 X 17763603 17763603 G T SCML1 Nonsense_Mutation p.E21* 0.26 TCGA-CJ-5677-01 X 19042026 19042026 C T GPR64 Splice_Site p.X170_splice 0.06 TCGA-CJ-5677-01 X 46887397 46887397 A C JADE3 Silent p.L193L 0.08 TCGA-CJ-5677-01 X 49957227 49957227 T A AKAP4 Nonsense_Mutation p.K713* 0.27 TCGA-CJ-5677-01 X 55514285 55514285 C G USP51 Missense_Mutation p.R363T 0.33 deleterious(0) probably_damaging(0.966) TCGA-CJ-5678-01 10 7683956 7683956 G A ITIH5 Missense_Mutation p.S78F 0.25 deleterious(0.03) benign(0.25) TCGA-CJ-5678-01 11 104900436 104900441 AAACTT - CASP1 In_Frame_Del p.S272_L273del 0.14 TCGA-CJ-5678-01 11 118473069 118473069 G - ARCN1 3'UTR 0.25 TCGA-CJ-5678-01 11 134188593 134188593 G A GLB1L3 Silent p.Q616Q 0.24 TCGA-CJ-5678-01 11 30358438 30358438 A C ARL14EP 3'UTR 0.36 TCGA-CJ-5678-01 11 50003264 50003264 G T OR4C12 Silent p.R258R 0.22 TCGA-CJ-5678-01 11 66807569 66807569 G A SYT12 Silent p.A172A 0.08 TCGA-CJ-5678-01 11 771046 771046 A G PDDC1 Silent p.N201N 0.17 TCGA-CJ-5678-01 11 95523745 95523745 T G CEP57 5'UTR 0.29 TCGA-CJ-5678-01 12 120119280 120119280 G A PRKAB1 3'UTR 0.64 TCGA-CJ-5678-01 12 56221492 56221492 T - DNAJC14 Frame_Shift_Del p.G318Dfs*35 0.19 TCGA-CJ-5678-01 15 22709123 22709123 G T AC116165.1 5'Flank 0.34 TCGA-CJ-5678-01 15 33261665 33261668 AGTT - FMN1 Frame_Shift_Del p.E522Vfs*12 0.22 TCGA-CJ-5678-01 15 42742412 42742412 G A ZNF106 Silent p.H663H 0.30 TCGA-CJ-5678-01 16 1417749 1417749 T C UNKL Missense_Mutation p.N563D 0.16 tolerated(0.05) benign(0.08) TCGA-CJ-5678-01 17 15498178 15498178 C T RP11-385D13.1 Silent p.V887V 0.20 TCGA-CJ-5678-01 17 37580984 37580984 T - MED1 Frame_Shift_Del p.S250Lfs*4 0.21 TCGA-CJ-5678-01 19 2353056 2353056 C G LLfos-48D6.1 Intron 0.32 TCGA-CJ-5678-01 19 38924363 38924363 G A RYR1 5'Flank 0.23 TCGA-CJ-5678-01 19 53117760 53117760 T A ZNF83 Missense_Mutation p.N20Y 0.33 deleterious(0) probably_damaging(0.979) TCGA-CJ-5678-01 19 55489152 55489152 G A NLRP2 Missense_Mutation p.V120M 0.25 tolerated(0.18) benign(0.124) TCGA-CJ-5678-01 19 6984836 6984836 G A EMR4P RNA 0.28 TCGA-CJ-5678-01 19 7809904 7809904 G T CD209 Silent p.R275R 0.27 TCGA-CJ-5678-01 1 112309100 112309100 C A DDX20 Missense_Mutation p.S685Y 0.12 deleterious(0.05) benign(0.332) TCGA-CJ-5678-01 1 155160211 155160211 G T MUC1 Silent p.I356I 0.44 TCGA-CJ-5678-01 1 165513950 165513950 A T LRRC52 Missense_Mutation p.L139F 0.21 tolerated(0.56) benign(0.005) TCGA-CJ-5678-01 1 167097025 167097025 A T DUSP27 Missense_Mutation p.D886V 0.41 deleterious(0) possibly_damaging(0.556) TCGA-CJ-5678-01 1 245250798 245250798 T C EFCAB2 3'UTR 0.26 TCGA-CJ-5678-01 1 28764918 28764918 G T PHACTR4 Missense_Mutation p.R8I 0.40 deleterious_low_confidence(0.05) possibly_damaging(0.629) TCGA-CJ-5678-01 1 89615167 89615168 CT - GBP7 Frame_Shift_Del p.Q320Lfs*2 0.41 TCGA-CJ-5678-01 20 39831542 39831542 G C ZHX3 Missense_Mutation p.T672S 0.28 tolerated(0.69) benign(0.004) TCGA-CJ-5678-01 20 39831543 39831543 T C ZHX3 Missense_Mutation p.T672A 0.28 tolerated(0.76) benign(0.001) TCGA-CJ-5678-01 20 44004124 44004124 T C TP53TG5 Missense_Mutation p.K108R 0.20 deleterious(0.03) possibly_damaging(0.677) TCGA-CJ-5678-01 2 11738892 11738892 C A GREB1 Missense_Mutation p.Q747K 0.26 deleterious(0.04) benign(0.067) TCGA-CJ-5678-01 2 159196824 159196824 T C CCDC148 Missense_Mutation p.Y139C 0.26 tolerated(0.15) probably_damaging(0.966) TCGA-CJ-5678-01 2 198368085 198368085 T C HSPE1 3'UTR 0.09 TCGA-CJ-5678-01 2 202082403 202082403 C A CASP10 Missense_Mutation p.P503H 0.22 deleterious(0) probably_damaging(0.972) TCGA-CJ-5678-01 2 206870035 206870035 C G INO80D Missense_Mutation p.G714A 0.23 deleterious(0.04) possibly_damaging(0.599) TCGA-CJ-5678-01 3 119528962 119528962 C A NR1I2 Nonsense_Mutation p.C123* 0.38 TCGA-CJ-5678-01 3 132387762 132387762 A G UBA5 Missense_Mutation p.H133R 0.29 tolerated(0.47) benign(0) TCGA-CJ-5678-01 3 180321060 180321060 G C TTC14 Missense_Mutation p.L145F 0.05 deleterious(0) probably_damaging(0.995) TCGA-CJ-5678-01 3 47164730 47164730 T A SETD2 Nonsense_Mutation p.K466* 0.38 TCGA-CJ-5678-01 3 52620517 52620518 - C PBRM1 Frame_Shift_Ins p.A1079Gfs*3 0.27 TCGA-CJ-5678-01 4 130023911 130023911 C G C4orf33 Missense_Mutation p.P49R 0.30 deleterious(0) possibly_damaging(0.844) TCGA-CJ-5678-01 4 47788855 47788855 G T CORIN Missense_Mutation p.T99K 0.21 tolerated(0.73) benign(0.017) TCGA-CJ-5678-01 5 112899158 112899165 TAATTGTA - YTHDC2 Frame_Shift_Del p.L804* 0.27 TCGA-CJ-5678-01 5 148629402 148629402 A C ABLIM3 Missense_Mutation p.D575A 0.23 tolerated(0.08) benign(0.036) TCGA-CJ-5678-01 5 179538533 179538533 T C RASGEF1C Silent p.K409K 0.18 TCGA-CJ-5678-01 5 40843790 40843790 G A CARD6 Missense_Mutation p.E274K 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-CJ-5678-01 5 6620322 6620322 C - NSUN2 Frame_Shift_Del p.V238Wfs*14 0.31 TCGA-CJ-5678-01 6 127902329 127902329 T G C6orf58 Nonsense_Mutation p.Y192* 0.29 TCGA-CJ-5678-01 6 146720336 146720336 G T GRM1 Missense_Mutation p.V721L 0.30 tolerated(0.2) benign(0.139) TCGA-CJ-5678-01 6 152382174 152382174 G T ESR1 Silent p.L428L 0.30 TCGA-CJ-5678-01 6 152473119 152473120 AC - SYNE1 Frame_Shift_Del p.V8096Hfs*15 0.28 TCGA-CJ-5678-01 6 28333631 28333631 A G ZKSCAN3 Missense_Mutation p.K396E 0.23 deleterious(0) probably_damaging(0.93) TCGA-CJ-5678-01 6 41752690 41752690 C T PRICKLE4 Silent p.A86A 0.33 TCGA-CJ-5678-01 6 57013144 57013144 G A ZNF451 Missense_Mutation p.R754H 0.28 tolerated(0.06) probably_damaging(0.976) TCGA-CJ-5678-01 6 7583787 7583787 G T DSP Missense_Mutation p.D2098Y 0.08 probably_damaging(0.999) TCGA-CJ-5678-01 8 103297526 103297526 A G UBR5 Missense_Mutation p.M1842T 0.27 deleterious(0) possibly_damaging(0.769) TCGA-CJ-5678-01 8 30651536 30651536 G T PPP2CB Nonsense_Mutation p.S212* 0.26 TCGA-CJ-5678-01 X 54975600 54975600 C G PFKFB1 Missense_Mutation p.V301L 0.08 possibly_damaging(0.637) TCGA-CJ-5678-01 Y 15024911 15024911 T A DDX3Y Missense_Mutation p.F158L 0.61 deleterious(0) possibly_damaging(0.831) TCGA-CJ-5679-01 10 122624668 122624668 G C WDR11 Missense_Mutation p.V275L 0.21 tolerated(0.32) benign(0.002) TCGA-CJ-5679-01 10 28233820 28233820 G C ARMC4 Missense_Mutation p.C486W 0.04 deleterious(0) probably_damaging(0.995) TCGA-CJ-5679-01 10 50732744 50732744 C A ERCC6-PGBD3 Missense_Mutation p.Q244H 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CJ-5679-01 10 68940123 68940123 G A CTNNA3 Silent p.N333N 0.24 TCGA-CJ-5679-01 10 88659781 88659781 C T BMPR1A Intron 0.21 TCGA-CJ-5679-01 11 12316279 12316279 A C MICALCL Missense_Mutation p.E434A 0.43 tolerated(0.86) benign(0.002) TCGA-CJ-5679-01 11 124955896 124955896 C T SLC37A2 Missense_Mutation p.S491F 0.20 tolerated(0.66) benign(0.005) TCGA-CJ-5679-01 11 12958817 12958817 T C TEAD1 3'UTR 0.41 TCGA-CJ-5679-01 11 57076422 57076422 C T TNKS1BP1 Missense_Mutation p.V1255M 0.25 tolerated(0.06) benign(0.077) TCGA-CJ-5679-01 11 5727831 5727831 T C TRIM22 Missense_Mutation p.I253T 0.44 tolerated(0.22) benign(0.101) TCGA-CJ-5679-01 11 6231300 6231300 G A C11orf42 Missense_Mutation p.R98Q 0.19 tolerated(0.32) benign(0.035) TCGA-CJ-5679-01 11 6231320 6231320 C T C11orf42 Nonsense_Mutation p.R105* 0.23 TCGA-CJ-5679-01 11 6231744 6231744 C T C11orf42 Missense_Mutation p.T246I 0.16 tolerated_low_confidence(0.06) benign(0.012) TCGA-CJ-5679-01 11 9868520 9868520 T G SBF2 Missense_Mutation p.T973P 0.30 deleterious(0) benign(0.078) TCGA-CJ-5679-01 12 102120124 102120124 T A CHPT1 Missense_Mutation p.I373N 0.37 deleterious(0) probably_damaging(0.999) TCGA-CJ-5679-01 12 119552153 119552153 C T SRRM4 Missense_Mutation p.R117W 0.21 deleterious_low_confidence(0) unknown(0) TCGA-CJ-5679-01 12 123812074 123812074 A G SBNO1 Missense_Mutation p.Y531H 0.46 deleterious(0) probably_damaging(1) TCGA-CJ-5679-01 12 125435351 125435351 C T DHX37 Splice_Site p.X957_splice 0.39 TCGA-CJ-5679-01 12 6776846 6776846 T A ZNF384 3'UTR 0.37 TCGA-CJ-5679-01 12 7177889 7177889 G T C1S Silent p.R667R 0.45 TCGA-CJ-5679-01 12 7242701 7242701 A T C1R Missense_Mutation p.N124K 0.36 deleterious(0.02) possibly_damaging(0.773) TCGA-CJ-5679-01 12 90003742 90003742 A T ATP2B1 Missense_Mutation p.L805Q 0.43 deleterious(0) possibly_damaging(0.718) TCGA-CJ-5679-01 13 109707736 109707736 A G MYO16 Splice_Site p.X1022_splice 0.05 TCGA-CJ-5679-01 14 67819728 67819728 T - ATP6V1D Frame_Shift_Del p.K24Rfs*10 0.26 TCGA-CJ-5679-01 14 78184785 78184797 CTCTGGGCCATAT - SNW1 Frame_Shift_Del p.D442Vfs*18 0.30 TCGA-CJ-5679-01 15 40849253 40849253 T A C15orf57 Intron 0.38 TCGA-CJ-5679-01 15 49301479 49301479 C A SECISBP2L Missense_Mutation p.S654I 0.20 deleterious(0) probably_damaging(0.998) TCGA-CJ-5679-01 15 72640389 72640389 G A HEXA Missense_Mutation p.T358M 0.09 tolerated(0.08) benign(0.011) TCGA-CJ-5679-01 16 14334311 14334311 A T MKL2 Missense_Mutation p.N350I 0.33 deleterious(0) probably_damaging(0.934) TCGA-CJ-5679-01 16 24921753 24921753 G A SLC5A11 Missense_Mutation p.V593I 0.14 tolerated(0.58) benign(0.001) TCGA-CJ-5679-01 16 28620121 28620121 G A SULT1A1 Missense_Mutation p.P19L 0.25 tolerated(0.36) probably_damaging(1) TCGA-CJ-5679-01 16 30734026 30734026 C T SRCAP Silent p.T1283T 0.12 TCGA-CJ-5679-01 16 57991272 57991272 A T CNGB1 Missense_Mutation p.S283T 0.42 tolerated_low_confidence(0.27) benign(0.162) TCGA-CJ-5679-01 16 7645620 7645620 G A RBFOX1 Missense_Mutation p.V200M 0.08 deleterious(0.01) possibly_damaging(0.519) TCGA-CJ-5679-01 17 16596346 16596346 C T CCDC144A Missense_Mutation p.P133L 0.37 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-CJ-5679-01 17 21731234 21731234 A C UBBP4 Intron 0.19 TCGA-CJ-5679-01 17 27417116 27417116 G C MYO18A Missense_Mutation p.L1797V 0.53 tolerated(0.1) benign(0.257) TCGA-CJ-5679-01 17 34234138 34234138 G A AC015849.16 RNA 0.30 TCGA-CJ-5679-01 17 4836600 4836600 G A GP1BA Missense_Mutation p.R234H 0.29 tolerated(0.48) possibly_damaging(0.782) TCGA-CJ-5679-01 17 4923903 4923903 G A KIF1C Missense_Mutation p.D623N 0.65 deleterious(0) possibly_damaging(0.821) TCGA-CJ-5679-01 17 74270248 74270248 T C QRICH2 3'UTR 0.22 TCGA-CJ-5679-01 17 76450661 76450661 C T DNAH17 Missense_Mutation p.G3419S 0.29 benign(0) TCGA-CJ-5679-01 17 9873005 9873005 C T GAS7 Missense_Mutation p.G154S 0.24 tolerated(0.79) benign(0.015) TCGA-CJ-5679-01 19 10222268 10222268 G A P2RY11 5'UTR 0.39 TCGA-CJ-5679-01 19 11486488 11486489 TC - SWSAP1 Frame_Shift_Del p.P163Cfs*53 0.37 TCGA-CJ-5679-01 19 13248132 13248132 A G NACC1 Missense_Mutation p.S390G 0.38 deleterious(0.01) benign(0.206) TCGA-CJ-5679-01 19 15582806 15582806 T C PGLYRP2 Missense_Mutation p.Y413C 0.08 deleterious(0) probably_damaging(0.992) TCGA-CJ-5679-01 19 4280225 4280225 G A SHD Silent p.P55P 0.16 TCGA-CJ-5679-01 19 44010895 44010895 G C ETHE1 3'UTR 0.63 TCGA-CJ-5679-01 19 44680985 44680985 G C ZNF226 Missense_Mutation p.V524L 0.17 deleterious(0.04) probably_damaging(0.919) TCGA-CJ-5679-01 19 4719861 4719861 A T DPP9 Splice_Site p.X19_splice 0.50 TCGA-CJ-5679-01 19 52869427 52869427 G A ZNF610 Missense_Mutation p.D266N 0.26 deleterious(0.04) benign(0.105) TCGA-CJ-5679-01 1 11184573 11184573 G T MTOR Missense_Mutation p.S2215Y 0.62 deleterious(0) possibly_damaging(0.77) TCGA-CJ-5679-01 1 146672930 146672930 G A FMO5 Silent p.A329A 0.10 TCGA-CJ-5679-01 1 15428039 15428039 C T KAZN Silent p.S516S 0.89 TCGA-CJ-5679-01 1 186303510 186303510 G C TPR Missense_Mutation p.T1710S 0.39 benign(0.292) TCGA-CJ-5679-01 1 23743879 23743879 G A TCEA3 Silent p.S81S 0.71 TCGA-CJ-5679-01 1 240492737 240492737 G A FMN2 Missense_Mutation p.R1469H 0.43 possibly_damaging(0.766) TCGA-CJ-5679-01 1 3350397 3350397 G T PRDM16 3'UTR 0.27 TCGA-CJ-5679-01 1 6157369 6157369 G - KCNAB2 Frame_Shift_Del p.A372Pfs*69 0.46 TCGA-CJ-5679-01 1 67301400 67301400 C T WDR78 Missense_Mutation p.A548T 0.09 tolerated(0.24) benign(0.001) TCGA-CJ-5679-01 1 75009648 75009648 C A TNNI3K Missense_Mutation p.S931R 0.33 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-CJ-5679-01 1 82456186 82456186 A C LPHN2 Missense_Mutation p.Q1190P 0.58 tolerated(0.3) possibly_damaging(0.69) TCGA-CJ-5679-01 20 60906147 60906147 C T LAMA5 Silent p.P1197P 0.12 TCGA-CJ-5679-01 21 17205757 17205757 G A USP25 Missense_Mutation p.R695Q 0.40 tolerated(0.24) benign(0) TCGA-CJ-5679-01 21 32202006 32202006 G C KRTAP7-1 RNA 0.24 TCGA-CJ-5679-01 22 30418102 30418102 G A MTMR3 Missense_Mutation p.E1104K 0.52 deleterious(0) probably_damaging(0.995) TCGA-CJ-5679-01 22 38270461 38270461 G A EIF3L Missense_Mutation p.R279H 0.21 deleterious(0.02) possibly_damaging(0.466) TCGA-CJ-5679-01 2 116510751 116510751 G T DPP10 Nonsense_Mutation p.E322* 0.26 TCGA-CJ-5679-01 2 168103812 168103812 G C XIRP2 Missense_Mutation p.Q1970H 0.19 benign(0.032) TCGA-CJ-5679-01 2 202172343 202172343 T C ALS2CR12 Missense_Mutation p.K260E 0.53 tolerated(0.06) benign(0.046) TCGA-CJ-5679-01 2 212426720 212426720 T A ERBB4 Missense_Mutation p.M799L 0.50 tolerated(0.06) possibly_damaging(0.677) TCGA-CJ-5679-01 2 212426721 212426721 A T ERBB4 Silent p.L798L 0.50 TCGA-CJ-5679-01 2 228754578 228754578 T A DAW1 Missense_Mutation p.D40E 0.25 deleterious(0.01) benign(0.005) TCGA-CJ-5679-01 2 3217939 3217939 T C TSSC1 Missense_Mutation p.E166G 0.49 tolerated(0.21) benign(0.004) TCGA-CJ-5679-01 2 3217940 3217940 C A TSSC1 Nonsense_Mutation p.E166* 0.49 TCGA-CJ-5679-01 2 84880607 84880607 G A DNAH6 Missense_Mutation p.G1748D 0.26 deleterious(0) probably_damaging(1) TCGA-CJ-5679-01 2 85835903 85835903 G A C2orf68 3'UTR 0.31 TCGA-CJ-5679-01 3 128813995 128813995 C A ISY1-RAB43 Missense_Mutation p.R290L 0.27 deleterious_low_confidence(0.04) benign(0.161) TCGA-CJ-5679-01 3 169802072 169802072 T C GPR160 Silent p.T104T 0.73 TCGA-CJ-5679-01 3 182683307 182683336 TCACAAGCAAGCACTCACCTTTGTATCTAT - DCUN1D1 Splice_Site p.X70_splice 0.45 TCGA-CJ-5679-01 3 196650309 196650309 C G SENP5 Missense_Mutation p.L637V 0.69 deleterious(0.05) probably_damaging(0.972) TCGA-CJ-5679-01 3 52584643 52584643 A - PBRM1 Frame_Shift_Del p.L1457Wfs*32 0.43 TCGA-CJ-5679-01 3 63981575 63981575 C A ATXN7 Missense_Mutation p.Q693K 0.73 tolerated(0.17) benign(0.026) TCGA-CJ-5679-01 4 110862256 110862256 A T EGF Missense_Mutation p.E94D 0.40 deleterious(0.02) possibly_damaging(0.52) TCGA-CJ-5679-01 4 151504561 151504561 A T MAB21L2 Missense_Mutation p.K127M 0.23 deleterious(0) probably_damaging(0.998) TCGA-CJ-5679-01 4 2045589 2045589 C T C4orf48 Missense_Mutation p.T108M 0.20 deleterious(0) probably_damaging(0.98) TCGA-CJ-5679-01 4 46930501 46930501 G A GABRA4 Missense_Mutation p.S469L 0.07 tolerated_low_confidence(0.09) benign(0.054) TCGA-CJ-5679-01 5 137771430 137771430 C A KDM3B 3'UTR 0.58 TCGA-CJ-5679-01 5 137895767 137895767 A G HSPA9 Missense_Mutation p.V399A 0.24 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CJ-5679-01 5 14610498 14610498 A G FAM105A 3'UTR 0.22 TCGA-CJ-5679-01 5 147665762 147665762 T A SPINK13 3'UTR 0.15 TCGA-CJ-5679-01 5 41927219 41927219 G A FBXO4 Silent p.L98L 0.32 TCGA-CJ-5679-01 5 42807034 42807035 AA - SEPP1 Frame_Shift_Del p.L127Kfs*? 0.37 TCGA-CJ-5679-01 5 5447953 5447953 G T KIAA0947 Splice_Site p.X183_splice 0.03 TCGA-CJ-5679-01 5 66459741 66459741 G A MAST4 Silent p.P1578P 0.31 TCGA-CJ-5679-01 5 68414420 68414420 A G SLC30A5 Missense_Mutation p.I512V 0.28 tolerated(0.53) benign(0.027) TCGA-CJ-5679-01 6 116288847 116288847 T A FRK Missense_Mutation p.K222N 0.62 tolerated(0.55) benign(0.005) TCGA-CJ-5679-01 6 146975333 146975333 C G ADGB Silent p.L131L 0.67 TCGA-CJ-5679-01 6 36442785 36442785 G A KCTD20 Missense_Mutation p.R127H 0.29 deleterious(0.02) possibly_damaging(0.828) TCGA-CJ-5679-01 6 54806759 54806759 G A FAM83B Missense_Mutation p.R997Q 0.69 tolerated(0.23) probably_damaging(0.943) TCGA-CJ-5679-01 7 1037413 1037413 G T C7orf50 Missense_Mutation p.L145M 0.52 deleterious(0) probably_damaging(0.981) TCGA-CJ-5679-01 7 142326873 142326873 C G TRBV19 Missense_Mutation p.D57E 0.27 deleterious(0) probably_damaging(0.998) TCGA-CJ-5679-01 7 143792898 143792898 G T OR2A12 Missense_Mutation p.R233L 0.21 deleterious(0.02) probably_damaging(0.922) TCGA-CJ-5679-01 7 149480310 149480310 A C SSPO RNA 0.23 TCGA-CJ-5679-01 7 16445697 16445697 T C ISPD Missense_Mutation p.K175E 0.49 deleterious(0.01) benign(0.073) TCGA-CJ-5679-01 7 2629606 2629606 C G IQCE Silent p.A370A 0.55 TCGA-CJ-5679-01 7 92730584 92730584 T C SAMD9 3'UTR 0.58 TCGA-CJ-5679-01 7 95157534 95157534 C T ASB4 Silent p.R299R 0.54 TCGA-CJ-5679-01 7 99987688 99987688 T G PILRA Missense_Mutation p.I211S 0.27 deleterious(0) benign(0.235) TCGA-CJ-5679-01 8 113518989 113518989 G A CSMD3 Missense_Mutation p.P1609L 0.03 deleterious(0) probably_damaging(1) TCGA-CJ-5679-01 8 25189787 25189787 A T DOCK5 Missense_Mutation p.N642Y 0.27 deleterious(0) possibly_damaging(0.862) TCGA-CJ-5679-01 8 61774816 61774816 G A CHD7 Missense_Mutation p.R2631Q 0.05 probably_damaging(0.945) TCGA-CJ-5679-01 8 70591818 70591818 G A SLCO5A1 Missense_Mutation p.R607C 0.06 deleterious(0) probably_damaging(0.964) TCGA-CJ-5679-01 8 98703400 98703400 A C MTDH Silent p.S344S 0.22 TCGA-CJ-5679-01 9 103348313 103348313 A C MURC Silent p.I225I 0.72 TCGA-CJ-5679-01 9 117053135 117053135 G T COL27A1 Missense_Mutation p.G1472W 0.19 unknown(0) TCGA-CJ-5679-01 9 130287413 130287413 G A FAM129B Silent p.A115A 0.73 TCGA-CJ-5679-01 X 128886138 128886138 C A XPNPEP2 Missense_Mutation p.N278K 0.81 deleterious(0.01) benign(0.027) TCGA-CJ-5679-01 X 135730560 135730560 C T CD40LG Silent p.D51D 0.83 TCGA-CJ-5679-01 X 36324941 36324941 G A CXorf30 Missense_Mutation p.A159T 0.80 tolerated(0.06) possibly_damaging(0.9) TCGA-CJ-5679-01 X 37935825 37935825 T - SYTL5 Frame_Shift_Del p.S189Afs*12 0.43 TCGA-CJ-5679-01 X 53115408 53115408 G T TSPYL2 Missense_Mutation p.D612Y 0.81 deleterious_low_confidence(0.04) benign(0.144) TCGA-CJ-5680-01 10 70954975 70954975 G A SUPV3L1 Missense_Mutation p.M295I 0.25 deleterious(0.01) possibly_damaging(0.885) TCGA-CJ-5680-01 10 91497461 91497461 C A KIF20B Missense_Mutation p.Q915K 0.26 tolerated(0.54) benign(0.005) TCGA-CJ-5680-01 11 134188869 134188869 G T GLB1L3 3'UTR 0.34 TCGA-CJ-5680-01 11 19180582 19180582 T G ZDHHC13 Missense_Mutation p.F368C 0.30 deleterious(0.05) benign(0.195) TCGA-CJ-5680-01 11 31816305 31816305 C T PAX6 Silent p.E199E 0.27 TCGA-CJ-5680-01 11 48153229 48153229 G C PTPRJ Intron 0.31 TCGA-CJ-5680-01 11 55433031 55433031 A G OR4C6 Missense_Mutation p.Y130C 0.36 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CJ-5680-01 11 58978851 58978851 T A MPEG1 Silent p.S496S 0.31 TCGA-CJ-5680-01 11 78516425 78516425 T G TENM4 Missense_Mutation p.L697F 0.38 tolerated(0.72) benign(0.067) TCGA-CJ-5680-01 12 130926444 130926444 C T RIMBP2 Missense_Mutation p.E468K 0.40 deleterious(0.01) probably_damaging(0.915) TCGA-CJ-5680-01 12 29509405 29509405 T G ERGIC2 Missense_Mutation p.D161A 0.38 tolerated(0.37) benign(0.012) TCGA-CJ-5680-01 12 32138193 32138193 C T KIAA1551 Missense_Mutation p.A1435V 0.31 tolerated(0.19) benign(0.003) TCGA-CJ-5680-01 12 56720186 56720186 G C PAN2 Missense_Mutation p.P424A 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-CJ-5680-01 12 65564430 65564430 A T LEMD3 Missense_Mutation p.S352C 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.818) TCGA-CJ-5680-01 13 113481084 113481084 C A ATP11A Missense_Mutation p.T367K 0.34 deleterious(0) probably_damaging(0.999) TCGA-CJ-5680-01 14 58830901 58830901 T A ARID4A Silent p.S698S 0.38 TCGA-CJ-5680-01 15 28473477 28473477 C A HERC2 Missense_Mutation p.R1784L 0.23 benign(0.357) TCGA-CJ-5680-01 15 65621843 65621843 G A IGDCC3 Missense_Mutation p.A697V 0.24 tolerated_low_confidence(0.25) benign(0.003) TCGA-CJ-5680-01 16 29858602 29858602 G A MVP Missense_Mutation p.A784T 0.35 tolerated(0.15) probably_damaging(0.984) TCGA-CJ-5680-01 16 67692898 67692898 A G ACD Missense_Mutation p.L279P 0.15 deleterious(0) probably_damaging(1) TCGA-CJ-5680-01 16 75600784 75600784 G A GABARAPL2 Silent p.A23A 0.28 TCGA-CJ-5680-01 18 8793068 8793068 G C SOGA2 Missense_Mutation p.A654P 0.27 tolerated(0.12) benign(0.43) TCGA-CJ-5680-01 19 36003991 36003991 G A DMKN Silent p.R129R 0.27 TCGA-CJ-5680-01 19 50338353 50338353 C T MED25 Silent p.S531S 0.24 TCGA-CJ-5680-01 1 111824291 111824291 T G CHIAP2 RNA 0.17 TCGA-CJ-5680-01 1 151315361 151315361 G T RFX5 Silent p.I384I 0.47 TCGA-CJ-5680-01 1 158059420 158059420 T G KIRREL Splice_Site p.X391_splice 0.29 TCGA-CJ-5680-01 1 159832346 159832346 G C VSIG8 5'UTR 0.37 TCGA-CJ-5680-01 1 176640128 176640128 C A PAPPA2 Missense_Mutation p.L672M 0.30 deleterious(0.02) probably_damaging(1) TCGA-CJ-5680-01 1 218036142 218036142 T G SPATA17 Missense_Mutation p.F344L 0.32 tolerated(0.07) benign(0.007) TCGA-CJ-5680-01 1 237538046 237538046 T C RYR2 Silent p.S138S 0.33 TCGA-CJ-5680-01 1 26152903 26152903 G T MTFR1L Splice_Site p.X80_splice 0.32 TCGA-CJ-5680-01 1 85511028 85511028 C A MCOLN3 Missense_Mutation p.V6L 0.31 tolerated(0.36) benign(0.015) TCGA-CJ-5680-01 1 87104605 87104605 C T RP4-651E10.4 Intron 0.33 TCGA-CJ-5680-01 21 42729137 42729137 C T FAM3B 3'UTR 0.26 TCGA-CJ-5680-01 22 19175075 19175075 A T CLTCL1 Missense_Mutation p.Y1534N 0.38 deleterious(0) probably_damaging(0.98) TCGA-CJ-5680-01 22 24627459 24627459 G A GGT5 Missense_Mutation p.P265L 0.27 tolerated(0.12) possibly_damaging(0.694) TCGA-CJ-5680-01 2 135712132 135712132 T C CCNT2 Missense_Mutation p.Y703H 0.31 tolerated_low_confidence(0.3) possibly_damaging(0.873) TCGA-CJ-5680-01 2 196548615 196548615 A G SLC39A10 Missense_Mutation p.N401D 0.34 tolerated(0.52) benign(0.015) TCGA-CJ-5680-01 2 211521332 211521332 C A CPS1 Silent p.T1220T 0.34 TCGA-CJ-5680-01 2 44079623 44079623 C T ABCG8 Missense_Mutation p.P231L 0.47 deleterious(0) probably_damaging(1) TCGA-CJ-5680-01 2 74642858 74642858 C G C2orf81 Missense_Mutation p.G152A 0.29 tolerated(0.15) benign(0.401) TCGA-CJ-5680-01 2 96993737 96993737 C G ITPRIPL1 Silent p.L464L 0.24 TCGA-CJ-5680-01 3 101476949 101476949 G A CEP97 Missense_Mutation p.S500N 0.22 tolerated(0.1) benign(0.003) TCGA-CJ-5680-01 3 10191543 10191546 ACAT - VHL Frame_Shift_Del p.D179Afs*22 0.39 TCGA-CJ-5680-01 3 154858058 154858058 T C MME Missense_Mutation p.F312L 0.22 tolerated(0.08) possibly_damaging(0.728) TCGA-CJ-5680-01 3 52442523 52442523 A - BAP1 Frame_Shift_Del p.D74Efs*4 0.43 TCGA-CJ-5680-01 4 23830021 23830021 A G PPARGC1A Splice_Site p.X253_splice 0.33 TCGA-CJ-5680-01 4 55153699 55153699 T G PDGFRA Missense_Mutation p.F889V 0.33 deleterious(0) probably_damaging(1) TCGA-CJ-5680-01 4 57384876 57384876 G T ARL9 Nonsense_Mutation p.E17* 0.31 TCGA-CJ-5680-01 4 71255612 71255612 C T SMR3B 3'UTR 0.30 TCGA-CJ-5680-01 5 149449521 149449521 C G CSF1R Missense_Mutation p.E475D 0.29 tolerated(0.35) benign(0.044) TCGA-CJ-5680-01 5 170380686 170380686 G T RANBP17 Missense_Mutation p.M518I 0.36 tolerated(0.21) benign(0.021) TCGA-CJ-5680-01 5 64314067 64314067 C A CWC27 Silent p.I446I 0.25 TCGA-CJ-5680-01 6 32083396 32083396 C T ATF6B 3'UTR 0.25 TCGA-CJ-5680-01 7 150389838 150389838 C A GIMAP2 Missense_Mutation p.S155Y 0.21 deleterious(0) probably_damaging(0.951) TCGA-CJ-5680-01 7 24324865 24324865 A G NPY Silent p.L2L 0.21 TCGA-CJ-5680-01 7 48327659 48327659 C T ABCA13 Missense_Mutation p.A2980V 0.46 benign(0.003) TCGA-CJ-5680-01 7 87183196 87183196 T C ABCB1 Missense_Mutation p.T294A 0.23 tolerated(0.45) benign(0.013) TCGA-CJ-5680-01 8 125568483 125568483 G A MTSS1 Missense_Mutation p.A465V 0.34 tolerated(0.17) benign(0.008) TCGA-CJ-5680-01 9 137006663 137006663 G A WDR5 Silent p.A74A 0.39 TCGA-CJ-5680-01 X 12937801 12937801 A G TLR8 Silent p.S214S 0.14 TCGA-CJ-5680-01 X 14891810 14891810 G A MOSPD2 Splice_Site p.X4_splice 0.29 TCGA-CJ-5680-01 X 14891822 14891822 G A MOSPD2 Silent p.Q7Q 0.29 TCGA-CJ-5680-01 X 30254277 30254277 A T MAGEB3 Missense_Mutation p.Y79F 0.28 tolerated(0.7) benign(0) TCGA-CJ-5681-01 10 61432539 61432539 C G SLC16A9 Missense_Mutation p.G110A 0.26 deleterious(0) probably_damaging(0.999) TCGA-CJ-5681-01 11 55681849 55681849 A T OR5W2 Missense_Mutation p.D70E 0.43 deleterious(0.01) probably_damaging(0.978) TCGA-CJ-5681-01 12 120791103 120791103 G A MSI1 Silent p.P244P 0.36 TCGA-CJ-5681-01 13 114537540 114537540 T C GAS6 Missense_Mutation p.D273G 0.12 deleterious(0.02) possibly_damaging(0.453) TCGA-CJ-5681-01 13 73293134 73293134 A C MZT1 Missense_Mutation p.S61A 0.40 tolerated(1) benign(0.085) TCGA-CJ-5681-01 14 36982445 36982445 C T SFTA3 5'UTR 0.06 TCGA-CJ-5681-01 15 29412645 29412645 T C FAM189A1 3'UTR 0.10 TCGA-CJ-5681-01 16 72831125 72831125 C A ZFHX3 Missense_Mutation p.S1819I 0.35 benign(0.22) TCGA-CJ-5681-01 16 87493617 87493621 TGCTG - ZCCHC14 Frame_Shift_Del p.H92Qfs*5 0.36 TCGA-CJ-5681-01 17 55058513 55058513 C G SCPEP1 Silent p.A49A 0.34 TCGA-CJ-5681-01 18 21141440 21141440 G T NPC1 Missense_Mutation p.A172D 0.37 deleterious(0) possibly_damaging(0.777) TCGA-CJ-5681-01 18 21141441 21141441 C T NPC1 Missense_Mutation p.A172T 0.38 deleterious(0) possibly_damaging(0.723) TCGA-CJ-5681-01 19 18054506 18054506 C T CCDC124 Silent p.P218P 0.40 TCGA-CJ-5681-01 19 40903927 40903927 G T PRX Intron 0.42 TCGA-CJ-5681-01 19 55143551 55143551 G A LILRB1 Missense_Mutation p.R175H 0.37 tolerated(0.58) benign(0) TCGA-CJ-5681-01 1 153275057 153275057 C A PGLYRP3 Missense_Mutation p.A186S 0.35 tolerated(0.35) benign(0.081) TCGA-CJ-5681-01 1 16945628 16945628 G C RP5-1182A14.5 3'Flank 0.11 TCGA-CJ-5681-01 1 225525799 225525799 A G DNAH14 Missense_Mutation p.I3357V 0.44 benign(0.022) TCGA-CJ-5681-01 20 34319917 34319917 C T RBM39 Missense_Mutation p.R81Q 0.32 tolerated(0.12) benign(0.238) TCGA-CJ-5681-01 2 121685023 121685026 TCTG - GLI2 Frame_Shift_Del p.V80Tfs*20 0.46 TCGA-CJ-5681-01 2 209025594 209025594 C G CRYGA Missense_Mutation p.R153S 0.34 tolerated(0.21) possibly_damaging(0.479) TCGA-CJ-5681-01 3 50386816 50386816 C G NPRL2 Splice_Site p.X150_splice 0.61 TCGA-CJ-5681-01 6 107811866 107811866 A G SOBP Missense_Mutation p.S16G 0.33 deleterious(0) probably_damaging(0.994) TCGA-CJ-5681-01 6 56481876 56481876 T C DST Intron 0.34 TCGA-CJ-5681-01 7 100860059 100860059 G T PLOD3 Missense_Mutation p.L40M 0.50 deleterious(0.01) probably_damaging(0.921) TCGA-CJ-5681-01 7 100860060 100860060 C A PLOD3 Silent p.L39L 0.50 TCGA-CJ-5681-01 7 128323136 128323136 G A FAM71F2 Missense_Mutation p.E285K 0.39 deleterious(0) possibly_damaging(0.773) TCGA-CJ-5681-01 7 83640554 83640554 A G SEMA3A Silent p.R290R 0.36 TCGA-CJ-5681-01 8 120435421 120435421 A G NOV 3'UTR 0.12 TCGA-CJ-5681-01 8 61754584 61754584 G A CHD7 Missense_Mutation p.R1608K 0.35 probably_damaging(0.965) TCGA-CJ-5681-01 9 86474157 86474157 C A KIF27 Missense_Mutation p.V1022F 0.20 deleterious(0.05) benign(0.323) TCGA-CJ-5681-01 X 148037884 148037884 C T AFF2 Missense_Mutation p.S770F 0.39 deleterious(0.04) benign(0.305) TCGA-CJ-5681-01 X 152086678 152086678 C T ZNF185 Silent p.T137T 0.16 TCGA-CJ-5681-01 X 153906332 153906332 C T GAB3 3'UTR 0.30 TCGA-CJ-5682-01 10 115917317 115917320 TTAA - C10orf118 Frame_Shift_Del p.I251Nfs*3 0.20 TCGA-CJ-5682-01 10 14941580 14941580 G A SUV39H2 Missense_Mutation p.D298N 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-CJ-5682-01 10 14941582 14941582 C A SUV39H2 Missense_Mutation p.D298E 0.27 deleterious(0) probably_damaging(0.982) TCGA-CJ-5682-01 10 44868551 44868551 T A CXCL12 3'Flank 0.67 TCGA-CJ-5682-01 11 130069949 130069949 G - ST14 Frame_Shift_Del p.G638Afs*124 0.24 TCGA-CJ-5682-01 11 19187855 19187855 G T ZDHHC13 Missense_Mutation p.G466V 0.36 deleterious(0.01) probably_damaging(0.979) TCGA-CJ-5682-01 11 55761854 55761854 G C OR5F1 Missense_Mutation p.A83G 0.34 tolerated(0.08) benign(0.129) TCGA-CJ-5682-01 11 67395662 67395663 TA - NUDT8 Frame_Shift_Del p.T156Pfs*31 0.43 TCGA-CJ-5682-01 12 40745464 40745464 C G LRRK2 Missense_Mutation p.L2169V 0.37 tolerated(0.3) benign(0.05) TCGA-CJ-5682-01 12 40745465 40745465 T A LRRK2 Missense_Mutation p.L2169Q 0.37 deleterious(0) probably_damaging(0.95) TCGA-CJ-5682-01 12 50045173 50045173 C T FMNL3 Missense_Mutation p.G555D 0.34 tolerated(0.13) probably_damaging(0.999) TCGA-CJ-5682-01 12 50745374 50745374 A - FAM186A Frame_Shift_Del p.E1748Rfs*31 0.26 TCGA-CJ-5682-01 12 57588207 57588207 C A LRP1 Silent p.T2663T 0.48 TCGA-CJ-5682-01 12 7520737 7520737 T G CD163L1 Missense_Mutation p.I1377L 0.38 tolerated(0.17) benign(0.016) TCGA-CJ-5682-01 13 47279205 47279205 T C LRCH1 Missense_Mutation p.L468S 0.37 tolerated(0.09) benign(0.322) TCGA-CJ-5682-01 14 106641994 106641994 C T IGHV1-18 Missense_Mutation p.D2N 0.25 deleterious(0.02) probably_damaging(0.984) TCGA-CJ-5682-01 14 21058840 21058840 C - RNASE12 Frame_Shift_Del p.E15Kfs*4 0.24 TCGA-CJ-5682-01 15 101434385 101434385 G A ALDH1A3 Intron 0.50 TCGA-CJ-5682-01 15 25222145 25222145 C G SNRPN Missense_Mutation p.P130R 0.27 deleterious(0) probably_damaging(0.985) TCGA-CJ-5682-01 15 28499508 28499508 G C HERC2 Missense_Mutation p.Q1010E 0.26 benign(0.344) TCGA-CJ-5682-01 15 57565458 57565458 G T TCF12 Missense_Mutation p.R659I 0.44 deleterious(0) possibly_damaging(0.867) TCGA-CJ-5682-01 16 68224816 68224816 T A NFATC3 Silent p.I748I 0.40 TCGA-CJ-5682-01 17 33802320 33802320 A G SLFN12L Silent p.A463A 0.22 TCGA-CJ-5682-01 17 34182344 34182344 A T C17orf66 Missense_Mutation p.L479H 0.46 deleterious(0) possibly_damaging(0.847) TCGA-CJ-5682-01 17 62506316 62506316 A C CEP95 Missense_Mutation p.Q58H 0.19 deleterious(0) probably_damaging(0.957) TCGA-CJ-5682-01 17 73832900 73832900 A T UNC13D Silent p.G385G 0.51 TCGA-CJ-5682-01 17 9674867 9674867 A G DHRS7C Missense_Mutation p.F293L 0.19 tolerated(1) benign(0.001) TCGA-CJ-5682-01 18 47500800 47500800 G T MYO5B Silent p.G414G 0.25 TCGA-CJ-5682-01 19 10250366 10250366 A G DNMT1 Missense_Mutation p.F1312L 0.43 deleterious(0.01) possibly_damaging(0.897) TCGA-CJ-5682-01 19 13136046 13136046 G T NFIX Missense_Mutation p.R80L 0.36 deleterious(0) probably_damaging(0.999) TCGA-CJ-5682-01 19 15276831 15276831 C - NOTCH3 Frame_Shift_Del p.E1812Rfs*13 0.35 TCGA-CJ-5682-01 19 35225746 35225754 GTTCCCAGG - ZNF181 5'Flank 0.47 TCGA-CJ-5682-01 19 39882019 39882019 A G MED29 Missense_Mutation p.E7G 0.12 tolerated_low_confidence(0.41) benign(0.403) TCGA-CJ-5682-01 19 44301842 44301842 G T LYPD5 Silent p.T219T 0.41 TCGA-CJ-5682-01 19 45026873 45026873 C T CEACAM20 RNA 0.42 TCGA-CJ-5682-01 19 47491245 47491245 G C ARHGAP35 Splice_Site p.X1276_splice 0.32 TCGA-CJ-5682-01 19 52619876 52619876 T G ZNF616 Silent p.R181R 0.41 TCGA-CJ-5682-01 19 6381619 6381619 G C GTF2F1 Missense_Mutation p.Q282E 0.39 tolerated(1) benign(0.001) TCGA-CJ-5682-01 19 9087338 9087338 A G MUC16 Missense_Mutation p.S1493P 0.41 unknown(0) TCGA-CJ-5682-01 19 9297402 9297402 C T OR7D2 3'UTR 0.31 TCGA-CJ-5682-01 1 100964518 100964518 A G CDC14A Silent p.L485L 0.25 TCGA-CJ-5682-01 1 11579864 11579864 C T PTCHD2 Silent p.L709L 0.35 TCGA-CJ-5682-01 1 116939249 116939249 C G ATP1A1 Missense_Mutation p.I622M 0.18 deleterious(0) probably_damaging(0.958) TCGA-CJ-5682-01 1 151824751 151824751 C A THEM5 Missense_Mutation p.G103V 0.48 tolerated(0.21) benign(0.011) TCGA-CJ-5682-01 1 162324998 162324999 - GG NOS1AP Frame_Shift_Ins p.R207Gfs*32 0.41 TCGA-CJ-5682-01 1 211487169 211487169 C T RCOR3 3'UTR 0.26 TCGA-CJ-5682-01 1 22843894 22843894 A G ZBTB40 Missense_Mutation p.R924G 0.12 tolerated(0.06) benign(0.415) TCGA-CJ-5682-01 1 237664189 237664189 C G RYR2 Missense_Mutation p.F794L 0.20 possibly_damaging(0.873) TCGA-CJ-5682-01 1 32681941 32681941 G T TMEM234 3'UTR 0.50 TCGA-CJ-5682-01 1 33959102 33959102 T C ZSCAN20 Missense_Mutation p.L587P 0.10 tolerated(0.33) probably_damaging(0.94) TCGA-CJ-5682-01 1 71418546 71418546 T - PTGER3 3'UTR 0.18 TCGA-CJ-5682-01 20 23804633 23804638 AGTGTG - CST2 3'UTR 0.27 TCGA-CJ-5682-01 20 2777900 2777900 T G CPXM1 Missense_Mutation p.Q257P 0.34 deleterious(0) probably_damaging(0.962) TCGA-CJ-5682-01 20 61936833 61936837 CCCCT - COL20A1 Frame_Shift_Del p.P87Qfs*26 0.21 TCGA-CJ-5682-01 21 40568620 40568620 T G BRWD1 Missense_Mutation p.E2125D 0.24 deleterious_low_confidence(0.04) probably_damaging(0.97) TCGA-CJ-5682-01 22 26272193 26272193 T G MYO18B Missense_Mutation p.V1373G 0.39 deleterious(0) possibly_damaging(0.733) TCGA-CJ-5682-01 22 30973095 30973095 G A PES1 Missense_Mutation p.R569W 0.33 deleterious(0) possibly_damaging(0.876) TCGA-CJ-5682-01 22 32587136 32587136 C G RFPL2 Missense_Mutation p.D254H 0.35 tolerated(0.07) probably_damaging(0.987) TCGA-CJ-5682-01 2 120847955 120847966 ACTGGATCATCC - EPB41L5 In_Frame_Del p.L303_P306del 0.23 TCGA-CJ-5682-01 2 179483509 179483509 G T TTN Missense_Mutation p.P15590T 0.04 TCGA-CJ-5682-01 2 179631234 179631234 G A TTN Nonsense_Mutation p.R3193* 0.18 TCGA-CJ-5682-01 2 220239735 220239735 C A DNPEP Missense_Mutation p.V417F 0.35 deleterious(0) probably_damaging(0.968) TCGA-CJ-5682-01 2 220239736 220239736 C A DNPEP Missense_Mutation p.M416I 0.36 deleterious(0.01) benign(0.06) TCGA-CJ-5682-01 2 29455209 29455209 A G ALK Missense_Mutation p.S865P 0.38 tolerated(0.23) probably_damaging(0.947) TCGA-CJ-5682-01 2 75426105 75426105 C T TACR1 5'UTR 0.35 TCGA-CJ-5682-01 3 125690967 125690967 G T ROPN1B Missense_Mutation p.A24S 0.64 deleterious(0.02) benign(0.086) TCGA-CJ-5682-01 3 126386192 126386192 G A NUP210P1 Splice_Site 0.09 TCGA-CJ-5682-01 3 182740269 182740269 A G MCCC1 Missense_Mutation p.V602A 0.59 deleterious(0.04) benign(0.057) TCGA-CJ-5682-01 3 47098903 47098903 A T SETD2 Nonsense_Mutation p.L2124* 0.61 TCGA-CJ-5682-01 3 48508682 48508682 T C TREX1 Missense_Mutation p.W265R 0.57 tolerated(0.2) probably_damaging(0.989) TCGA-CJ-5682-01 3 52402795 52402795 C A DNAH1 Missense_Mutation p.A1935D 0.57 probably_damaging(0.936) TCGA-CJ-5682-01 3 52598080 52598080 T G PBRM1 Missense_Mutation p.E1262D 0.57 deleterious(0) benign(0.388) TCGA-CJ-5682-01 4 162307412 162307412 G A FSTL5 Silent p.V677V 0.21 TCGA-CJ-5682-01 4 69203460 69203460 T G YTHDC1 Missense_Mutation p.N97H 0.48 tolerated_low_confidence(0.63) unknown(0) TCGA-CJ-5682-01 5 127686561 127686561 T - FBN2 Frame_Shift_Del p.D938Ifs*68 0.19 TCGA-CJ-5682-01 5 129037259 129037259 G A ADAMTS19 Missense_Mutation p.V1039M 0.06 tolerated(0.08) benign(0.043) TCGA-CJ-5682-01 5 145843272 145843272 C T TCERG1 Missense_Mutation p.P351S 0.21 deleterious(0.02) unknown(0) TCGA-CJ-5682-01 5 167993043 167993044 TG - PANK3 Frame_Shift_Del p.D203Efs*3 0.29 TCGA-CJ-5682-01 5 56152549 56152549 T A MAP3K1 Nonsense_Mutation p.L202* 0.17 TCGA-CJ-5682-01 6 111346663 111346663 C T RPF2 Missense_Mutation p.H267Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-CJ-5682-01 6 165844947 165844947 T C PDE10A Missense_Mutation p.N236S 0.24 tolerated(0.39) possibly_damaging(0.61) TCGA-CJ-5682-01 6 26598223 26598223 G T ABT1 Missense_Mutation p.G108V 0.21 deleterious(0) probably_damaging(1) TCGA-CJ-5682-01 6 30459116 30459116 T A HLA-E Silent p.P271P 0.29 TCGA-CJ-5682-01 6 89871594 89871594 T A PM20D2 Missense_Mutation p.Y381N 0.46 deleterious(0) probably_damaging(0.969) TCGA-CJ-5682-01 7 112724772 112724772 G A GPR85 Missense_Mutation p.A2V 0.24 deleterious_low_confidence(0) benign(0.002) TCGA-CJ-5682-01 7 114330058 114330058 A T FOXP2 3'UTR 0.35 TCGA-CJ-5682-01 7 128457873 128457873 C T CCDC136 Missense_Mutation p.S1142L 0.08 tolerated(0.07) benign(0.42) TCGA-CJ-5682-01 7 129479130 129479130 T A UBE2H Missense_Mutation p.Y115F 0.40 deleterious(0) probably_damaging(0.998) TCGA-CJ-5682-01 7 1498817 1498818 - A MICALL2 Intron 0.35 TCGA-CJ-5682-01 7 4152925 4152925 C T SDK1 Nonsense_Mutation p.R1147* 0.13 TCGA-CJ-5682-01 7 66453154 66453154 G A SBDS 3'UTR 0.50 TCGA-CJ-5682-01 7 66453155 66453155 A T SBDS 3'UTR 0.50 TCGA-CJ-5682-01 7 66453159 66453159 A G SBDS 3'UTR 0.50 TCGA-CJ-5682-01 7 97851019 97851019 C G TECPR1 Missense_Mutation p.K1037N 0.45 deleterious(0.01) benign(0.197) TCGA-CJ-5682-01 8 142186848 142186848 C A DENND3 Silent p.A818A 0.50 TCGA-CJ-5682-01 9 116246492 116246492 T C RGS3 Silent p.A200A 0.25 TCGA-CJ-5682-01 9 139265895 139265895 A G CARD9 Missense_Mutation p.L68P 0.18 deleterious(0) probably_damaging(0.996) TCGA-CJ-5682-01 9 35608911 35608911 G C TESK1 Silent p.R351R 0.41 TCGA-CJ-5682-01 9 91680466 91680466 A C SHC3 Silent p.A271A 0.28 TCGA-CJ-5682-01 X 130407781 130407781 C T IGSF1 Missense_Mutation p.V1339I 0.03 deleterious_low_confidence(0.02) possibly_damaging(0.638) TCGA-CJ-5682-01 X 153735234 153735234 C T FAM3A Missense_Mutation p.V201M 0.34 tolerated(0.29) benign(0.024) TCGA-CJ-5683-01 10 55779999 55779999 A T PCDH15 Missense_Mutation p.Y902N 0.36 tolerated(0.51) benign(0.348) TCGA-CJ-5683-01 11 118968667 118968667 C T DPAGT1 Missense_Mutation p.S272N 0.36 deleterious(0) probably_damaging(0.998) TCGA-CJ-5683-01 11 119243611 119243611 A G USP2 Missense_Mutation p.Y194H 0.34 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-CJ-5683-01 11 18045491 18045491 C A TPH1 Missense_Mutation p.D324Y 0.27 deleterious(0) possibly_damaging(0.849) TCGA-CJ-5683-01 11 33790514 33790514 C A FBXO3 Missense_Mutation p.D81Y 0.29 tolerated(0.22) benign(0.342) TCGA-CJ-5683-01 11 68183829 68183829 C A LRP5 Missense_Mutation p.S954Y 0.29 deleterious(0.02) benign(0.004) TCGA-CJ-5683-01 11 72012879 72012879 C T CLPB Missense_Mutation p.V463M 0.07 deleterious(0) probably_damaging(0.998) TCGA-CJ-5683-01 11 75438650 75438650 G T MOGAT2 Silent p.R147R 0.32 TCGA-CJ-5683-01 12 125834194 125834194 T C TMEM132B Silent p.I83I 0.32 TCGA-CJ-5683-01 12 48439012 48439012 G A SENP1 3'UTR 0.34 TCGA-CJ-5683-01 12 52795073 52795075 CTT - KRT82 In_Frame_Del p.K227del 0.37 TCGA-CJ-5683-01 12 57548478 57548478 C T LRP1 Silent p.G407G 0.34 TCGA-CJ-5683-01 12 93171332 93171332 T - EEA1 Frame_Shift_Del p.N1334Tfs*12 0.27 TCGA-CJ-5683-01 13 114782719 114782719 G T RASA3 Silent p.I400I 0.41 TCGA-CJ-5683-01 13 41932483 41932483 G C NAA16 Missense_Mutation p.Q377H 0.29 tolerated(0.44) benign(0.315) TCGA-CJ-5683-01 14 21461323 21461323 T G METTL17 Missense_Mutation p.F192C 0.26 deleterious(0) probably_damaging(1) TCGA-CJ-5683-01 14 45577646 45577667 ATAGAATCATTGAGATTCATCA - PRPF39 Frame_Shift_Del p.H311Qfs*28 0.19 TCGA-CJ-5683-01 14 65569042 65569042 C A MAX Missense_Mutation p.D6Y 0.31 deleterious(0) probably_damaging(0.98) TCGA-CJ-5683-01 14 90437547 90437547 G A TDP1 Missense_Mutation p.D230N 0.29 deleterious(0.04) possibly_damaging(0.721) TCGA-CJ-5683-01 15 33842489 33842489 C G RYR3 Missense_Mutation p.S315C 0.32 possibly_damaging(0.868) TCGA-CJ-5683-01 15 52720650 52720650 C G MYO5A Silent p.V85V 0.07 TCGA-CJ-5683-01 16 20548590 20548590 C T ACSM2B Missense_Mutation p.R575H 0.27 tolerated(0.08) benign(0.003) TCGA-CJ-5683-01 16 53726183 53726183 C T RPGRIP1L Missense_Mutation p.M108I 0.24 deleterious(0.02) benign(0.027) TCGA-CJ-5683-01 16 70182440 70182440 T C PDPR Missense_Mutation p.L679P 0.05 deleterious(0) probably_damaging(0.992) TCGA-CJ-5683-01 16 70889122 70889122 A T HYDIN Missense_Mutation p.F4118I 0.27 possibly_damaging(0.765) TCGA-CJ-5683-01 16 74366481 74366481 A G AC009120.6 RNA 0.10 TCGA-CJ-5683-01 16 74442859 74442859 G A CLEC18B 3'UTR 0.05 TCGA-CJ-5683-01 16 8844355 8844355 G A ABAT Missense_Mutation p.R92Q 0.25 deleterious(0.05) benign(0.186) TCGA-CJ-5683-01 17 10399440 10399440 G A MYH1 Missense_Mutation p.R1666W 0.06 deleterious(0) possibly_damaging(0.883) TCGA-CJ-5683-01 17 19610039 19610039 A G SLC47A2 Missense_Mutation p.F291L 0.24 deleterious(0) possibly_damaging(0.57) TCGA-CJ-5683-01 17 39659227 39659227 T C KRT13 Missense_Mutation p.R287G 0.29 deleterious(0) possibly_damaging(0.464) TCGA-CJ-5683-01 17 45699310 45699310 G C NPEPPS 3'UTR 0.37 TCGA-CJ-5683-01 17 48183306 48183306 G T PDK2 Missense_Mutation p.M130I 0.36 deleterious(0) possibly_damaging(0.463) TCGA-CJ-5683-01 17 73999331 73999331 T A CDK3 Missense_Mutation p.I215N 0.27 deleterious(0) probably_damaging(0.995) TCGA-CJ-5683-01 17 73999332 73999332 C G CDK3 Missense_Mutation p.I215M 0.27 deleterious(0.01) possibly_damaging(0.735) TCGA-CJ-5683-01 17 79426336 79426336 G A RP11-1055B8.7 Silent p.E1926E 0.31 TCGA-CJ-5683-01 18 50683750 50683750 C A DCC Missense_Mutation p.P429H 0.34 deleterious(0) probably_damaging(0.999) TCGA-CJ-5683-01 19 13366037 13366038 GC - CACNA1A Frame_Shift_Del p.L1543Dfs*51 0.31 TCGA-CJ-5683-01 19 30193856 30193856 G T C19orf12 Silent p.A74A 0.36 TCGA-CJ-5683-01 19 8162185 8162185 G A FBN3 Silent p.L1759L 0.42 TCGA-CJ-5683-01 1 100503796 100503796 A T HIAT1 Missense_Mutation p.Q3L 0.24 tolerated(0.37) benign(0.002) TCGA-CJ-5683-01 1 109466798 109466798 G A GPSM2 Missense_Mutation p.A593T 0.30 tolerated(0.06) benign(0.031) TCGA-CJ-5683-01 1 114193677 114193677 A T MAGI3 Missense_Mutation p.K763N 0.33 deleterious(0.01) probably_damaging(0.947) TCGA-CJ-5683-01 1 152127611 152127611 C T RPTN Missense_Mutation p.S655N 0.33 tolerated(0.28) benign(0.012) TCGA-CJ-5683-01 1 155279736 155279736 A G FDPS Silent p.Q52Q 0.28 TCGA-CJ-5683-01 1 182551376 182551376 G A RNASEL Silent p.V528V 0.35 TCGA-CJ-5683-01 1 204955082 204955082 G A NFASC Intron 0.29 TCGA-CJ-5683-01 1 226180697 226180697 C A SDE2 Missense_Mutation p.G82V 0.35 deleterious(0) probably_damaging(1) TCGA-CJ-5683-01 1 228403481 228403481 G C OBSCN Silent p.L682L 0.38 TCGA-CJ-5683-01 1 246797267 246797267 C A CNST Missense_Mutation p.H220N 0.29 deleterious(0) probably_damaging(0.999) TCGA-CJ-5683-01 1 78249000 78249000 T C FAM73A Silent p.F53F 0.31 TCGA-CJ-5683-01 20 29628269 29628269 T A FRG1B Missense_Mutation p.C91S 0.02 tolerated(0.15) possibly_damaging(0.73) TCGA-CJ-5683-01 20 4839999 4839999 G A SLC23A2 Silent p.V552V 0.28 TCGA-CJ-5683-01 21 33744827 33744827 A T URB1 Silent p.G330G 0.31 TCGA-CJ-5683-01 21 46897797 46897797 C T COL18A1 Missense_Mutation p.P560L 0.24 unknown(0) TCGA-CJ-5683-01 22 20724443 20724443 G A USP41 Silent p.N149N 0.31 TCGA-CJ-5683-01 2 152220485 152220485 A C TNFAIP6 Missense_Mutation p.E41D 0.28 tolerated(0.51) benign(0.137) TCGA-CJ-5683-01 2 170026249 170026249 G A LRP2 Silent p.S3820S 0.32 TCGA-CJ-5683-01 2 234628268 234628268 C A UGT1A4 Missense_Mutation p.P268T 0.36 deleterious(0) probably_damaging(0.996) TCGA-CJ-5683-01 3 112998705 112998705 C A BOC Missense_Mutation p.N685K 0.49 deleterious(0) probably_damaging(0.99) TCGA-CJ-5683-01 3 124635228 124635228 C T MUC13 Silent p.K299K 0.28 TCGA-CJ-5683-01 3 48659067 48659067 C T TMEM89 Silent p.Q41Q 0.15 TCGA-CJ-5683-01 3 52582090 52582090 C - PBRM1 Frame_Shift_Del p.E1580Kfs*67 0.32 TCGA-CJ-5683-01 4 108574727 108574727 C T PAPSS1 Missense_Mutation p.R386Q 0.31 deleterious(0.02) benign(0.021) TCGA-CJ-5683-01 4 175649781 175649781 A G GLRA3 Silent p.P112P 0.30 TCGA-CJ-5683-01 5 139946853 139946853 T C SLC35A4 Silent p.H33H 0.20 TCGA-CJ-5683-01 5 140605198 140605198 G - PCDHB14 Frame_Shift_Del p.F708Sfs*32 0.69 TCGA-CJ-5683-01 5 76129775 76129775 T - F2RL1 3'UTR 0.28 TCGA-CJ-5683-01 6 146126842 146126842 T C FBXO30 Missense_Mutation p.K234E 0.36 tolerated(1) benign(0.013) TCGA-CJ-5683-01 6 35086231 35086231 G A TCP11 Nonsense_Mutation p.Q456* 0.30 TCGA-CJ-5683-01 6 87725912 87725912 G A HTR1E Missense_Mutation p.R287Q 0.31 deleterious(0) probably_damaging(0.984) TCGA-CJ-5683-01 7 101063320 101063320 C T COL26A1 Missense_Mutation p.T74M 0.33 deleterious(0) probably_damaging(1) TCGA-CJ-5683-01 7 143453714 143453714 G C CTAGE6 Missense_Mutation p.D346E 0.12 tolerated(0.23) benign(0.144) TCGA-CJ-5683-01 7 151877902 151877902 T C KMT2C Missense_Mutation p.Q2348R 0.27 benign(0.379) TCGA-CJ-5683-01 7 156759742 156759742 G A NOM1 Missense_Mutation p.A752T 0.22 tolerated(0.5) benign(0.326) TCGA-CJ-5683-01 7 23650959 23650959 A C CCDC126 Missense_Mutation p.N9H 0.29 tolerated_low_confidence(0.06) benign(0.273) TCGA-CJ-5683-01 7 4218194 4218194 G A SDK1 Missense_Mutation p.V1692M 0.38 deleterious(0.05) possibly_damaging(0.814) TCGA-CJ-5683-01 7 5105059 5105059 A G RBAK Missense_Mutation p.K658E 0.33 deleterious(0) probably_damaging(0.995) TCGA-CJ-5683-01 7 75048070 75048070 G T POM121C 3'UTR 0.24 TCGA-CJ-5683-01 7 91709305 91709305 A T AKAP9 Missense_Mutation p.T2620S 0.18 benign(0.003) TCGA-CJ-5683-01 7 99573623 99573623 G T AZGP1 Silent p.V7V 0.20 TCGA-CJ-5683-01 8 17157530 17157530 G A MTMR7 Silent p.D608D 0.30 TCGA-CJ-5683-01 8 80577225 80577225 A - STMN2 3'UTR 0.37 TCGA-CJ-5683-01 9 19305459 19305459 A - DENND4C Frame_Shift_Del p.Y474Ffs*30 0.25 TCGA-CJ-5684-01 10 55755498 55755498 T C PCDH15 Missense_Mutation p.S927G 0.10 tolerated(0.18) benign(0.013) TCGA-CJ-5684-01 10 55755499 55755499 A T PCDH15 Missense_Mutation p.F926L 0.11 deleterious(0) probably_damaging(0.999) TCGA-CJ-5684-01 10 99229886 99229886 C T MMS19 Silent p.L282L 0.12 TCGA-CJ-5684-01 11 112131327 112131327 T C PLET1 5'UTR 0.13 TCGA-CJ-5684-01 11 122817268 122817268 A T C11orf63 Missense_Mutation p.Q566L 0.11 deleterious(0) possibly_damaging(0.756) TCGA-CJ-5684-01 11 17793557 17793557 G A KCNC1 Missense_Mutation p.V306M 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-CJ-5684-01 11 18722527 18722527 C T TMEM86A Silent p.C23C 0.25 TCGA-CJ-5684-01 11 46766093 46766093 G C CKAP5 Silent p.P1913P 0.05 TCGA-CJ-5684-01 12 117477015 117477015 T A TESC Missense_Mutation p.I190F 0.28 deleterious(0) benign(0.299) TCGA-CJ-5684-01 12 4747326 4747326 C A AKAP3 Nonsense_Mutation p.G13* 0.32 TCGA-CJ-5684-01 12 6091108 6091108 C T VWF Silent p.P2377P 0.27 TCGA-CJ-5684-01 12 77424037 77424037 G T E2F7 Silent p.L486L 0.23 TCGA-CJ-5684-01 13 21557772 21557773 - T LATS2 Frame_Shift_Ins p.H691Qfs*36 0.20 TCGA-CJ-5684-01 13 77785318 77785318 A G MYCBP2 Missense_Mutation p.Y1096H 0.29 benign(0.067) TCGA-CJ-5684-01 14 75475938 75475938 A G EIF2B2 3'UTR 0.30 TCGA-CJ-5684-01 14 95029883 95029883 C T SERPINA4 Silent p.L22L 0.27 TCGA-CJ-5684-01 16 24231490 24231490 G T PRKCB 3'UTR 0.24 TCGA-CJ-5684-01 17 36935738 36935738 C A PIP4K2B Silent p.L184L 0.41 TCGA-CJ-5684-01 17 73851365 73851365 T A WBP2 Missense_Mutation p.K5M 0.21 deleterious(0) possibly_damaging(0.841) TCGA-CJ-5684-01 17 7667223 7667223 C T DNAH2 Missense_Mutation p.S1018L 0.30 benign(0.037) TCGA-CJ-5684-01 18 31320355 31320355 C A ASXL3 Missense_Mutation p.P996Q 0.28 benign(0.024) TCGA-CJ-5684-01 18 48510776 48510776 C A ELAC1 Silent p.I156I 0.19 TCGA-CJ-5684-01 19 34180166 34180166 G A CHST8 5'UTR 0.28 TCGA-CJ-5684-01 19 49912528 49912528 G C CCDC155 Missense_Mutation p.E378D 0.23 deleterious(0.02) benign(0.392) TCGA-CJ-5684-01 1 145438828 145438828 C A TXNIP Missense_Mutation p.S9Y 0.09 deleterious(0.01) benign(0.054) TCGA-CJ-5684-01 1 152084846 152084846 G T TCHH Silent p.R283R 0.22 TCGA-CJ-5684-01 1 206822222 206822222 G T DYRK3 Missense_Mutation p.G560V 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-CJ-5684-01 1 6504722 6504722 A G ESPN Missense_Mutation p.K391R 0.31 tolerated(0.11) benign(0.102) TCGA-CJ-5684-01 1 92643949 92643949 G C KIAA1107 Missense_Mutation p.G403A 0.29 deleterious(0.01) probably_damaging(1) TCGA-CJ-5684-01 22 18566476 18566476 G C PEX26 Missense_Mutation p.E215D 0.24 tolerated(0.11) possibly_damaging(0.676) TCGA-CJ-5684-01 22 39146349 39146349 T C SUN2 Missense_Mutation p.E155G 0.10 tolerated(0.39) benign(0) TCGA-CJ-5684-01 22 43614319 43614319 C T SCUBE1 Silent p.K611K 0.39 TCGA-CJ-5684-01 2 138421031 138421031 C A THSD7B Missense_Mutation p.P1516T 0.11 deleterious(0) unknown(0) TCGA-CJ-5684-01 3 101038458 101038458 C A IMPG2 Missense_Mutation p.A102S 0.23 deleterious(0) probably_damaging(0.992) TCGA-CJ-5684-01 3 101038459 101038459 C A IMPG2 Silent p.V101V 0.23 TCGA-CJ-5684-01 3 10188205 10188205 T C VHL Silent p.L116L 0.30 TCGA-CJ-5684-01 3 10188208 10188208 G C VHL Missense_Mutation p.W117C 0.30 deleterious(0) probably_damaging(1) TCGA-CJ-5684-01 3 113371901 113371901 A - KIAA2018 3'UTR 0.28 TCGA-CJ-5684-01 3 122631749 122631749 C T SEMA5B Missense_Mutation p.G943D 0.17 deleterious(0.04) probably_damaging(0.962) TCGA-CJ-5684-01 3 42916230 42916230 A G CYP8B1 Missense_Mutation p.V360A 0.50 deleterious(0.02) possibly_damaging(0.861) TCGA-CJ-5684-01 3 47158115 47158115 T A SETD2 Missense_Mutation p.E1528D 0.42 deleterious(0) probably_damaging(0.99) TCGA-CJ-5684-01 3 52610695 52610695 G A PBRM1 Nonsense_Mutation p.R1160* 0.17 TCGA-CJ-5684-01 3 52728434 52728434 A G GNL3 3'UTR 0.50 TCGA-CJ-5684-01 4 104097155 104097155 C A CENPE Nonsense_Mutation p.E481* 0.21 TCGA-CJ-5684-01 4 48862838 48862838 G T OCIAD1 3'UTR 0.30 TCGA-CJ-5684-01 4 78783945 78783945 A C MRPL1 5'UTR 0.29 TCGA-CJ-5684-01 4 83849233 83849233 T G LIN54 3'UTR 0.28 TCGA-CJ-5684-01 5 127488499 127488499 T G SLC12A2 Splice_Site p.X788_splice 0.21 TCGA-CJ-5684-01 6 28212765 28212765 T C ZKSCAN4 3'UTR 0.26 TCGA-CJ-5684-01 6 33996013 33996013 C T GRM4 Missense_Mutation p.R858H 0.22 deleterious(0.02) possibly_damaging(0.575) TCGA-CJ-5684-01 7 66532334 66532334 C T TYW1 Silent p.R406R 0.23 TCGA-CJ-5684-01 8 57214061 57214061 A G SDR16C5 Missense_Mutation p.V303A 0.26 tolerated(0.51) benign(0.001) TCGA-CJ-5684-01 8 95530150 95530150 G A KIAA1429 Missense_Mutation p.S845L 0.29 deleterious(0.01) possibly_damaging(0.692) TCGA-CJ-5684-01 9 132636882 132636883 - T USP20 Frame_Shift_Ins p.R590Lfs*71 0.28 TCGA-CJ-5684-01 9 132636883 132636883 G T USP20 Missense_Mutation p.R590L 0.28 deleterious(0) possibly_damaging(0.873) TCGA-CJ-5684-01 9 27109633 27109633 C T TEK Silent p.L15L 0.10 TCGA-CJ-5684-01 X 155233148 155233148 C A IL9R Missense_Mutation p.N59K 0.30 deleterious(0) probably_damaging(0.983) TCGA-CJ-5686-01 10 115374602 115374602 C - NRAP Frame_Shift_Del p.S1061Mfs*12 0.14 TCGA-CJ-5686-01 11 108199913 108199913 A T ATM Nonsense_Mutation p.R2419* 0.28 TCGA-CJ-5686-01 11 19213960 19213960 G A CSRP3 Silent p.A12A 0.20 TCGA-CJ-5686-01 11 19213973 19213973 G T CSRP3 Missense_Mutation p.A8E 0.21 tolerated(1) benign(0.327) TCGA-CJ-5686-01 11 61105442 61105442 T - DAK Frame_Shift_Del p.G12Afs*56 0.18 TCGA-CJ-5686-01 11 62455461 62455461 C G LRRN4CL Missense_Mutation p.G174R 0.28 tolerated(0.09) benign(0.125) TCGA-CJ-5686-01 11 96098194 96098194 A G CCDC82 Missense_Mutation p.Y444H 0.15 deleterious(0) probably_damaging(0.999) TCGA-CJ-5686-01 12 130648324 130648324 C T FZD10 Silent p.I279I 0.23 TCGA-CJ-5686-01 12 48143587 48143587 C T RAPGEF3 Silent p.G277G 0.16 TCGA-CJ-5686-01 12 53702266 53702266 C A AAAS Silent p.V378V 0.13 TCGA-CJ-5686-01 12 6579725 6579725 T - VAMP1 5'UTR 0.18 TCGA-CJ-5686-01 13 103053874 103053874 T A FGF14 Missense_Mutation p.H52L 0.20 tolerated(0.07) benign(0.004) TCGA-CJ-5686-01 13 23904812 23904812 C A SACS Missense_Mutation p.W4401C 0.19 possibly_damaging(0.635) TCGA-CJ-5686-01 14 53385908 53385908 A G FERMT2 Silent p.Y108Y 0.26 TCGA-CJ-5686-01 14 55895569 55895569 G A TBPL2 Silent p.P304P 0.28 TCGA-CJ-5686-01 15 101971643 101971643 C A PCSK6 Missense_Mutation p.C179F 0.17 deleterious(0) probably_damaging(0.982) TCGA-CJ-5686-01 16 16418712 16418712 G A PKD1P1 RNA 0.29 TCGA-CJ-5686-01 16 89616909 89616910 - A SPG7 Frame_Shift_Ins p.S560Efs*16 0.24 TCGA-CJ-5686-01 17 6386893 6386893 G A PITPNM3 Silent p.L177L 0.20 TCGA-CJ-5686-01 17 73998205 73998205 C A CDK3 Silent p.L99L 0.08 TCGA-CJ-5686-01 18 56205356 56205356 G A ALPK2 Missense_Mutation p.T688I 0.25 tolerated(0.14) benign(0.091) TCGA-CJ-5686-01 19 12807200 12807200 G A FBXW9 Missense_Mutation p.R66W 0.17 tolerated(0.12) benign(0.024) TCGA-CJ-5686-01 19 17169444 17169444 T G HAUS8 Missense_Mutation p.K187T 0.21 deleterious(0.03) benign(0.158) TCGA-CJ-5686-01 19 19129981 19129981 C T SUGP2 Missense_Mutation p.R596H 0.17 tolerated(0.09) benign(0.051) TCGA-CJ-5686-01 19 39008078 39008078 G T RYR1 Silent p.G3255G 0.16 TCGA-CJ-5686-01 19 40739535 40739535 A G AKT2 3'UTR 0.20 TCGA-CJ-5686-01 19 41306619 41306619 T C EGLN2 Missense_Mutation p.Y48H 0.13 deleterious_low_confidence(0) benign(0.276) TCGA-CJ-5686-01 19 51857941 51857941 A T ETFB 5'UTR 0.22 TCGA-CJ-5686-01 19 53058493 53058493 G T ZNF808 Missense_Mutation p.W775L 0.18 tolerated(0.62) benign(0.079) TCGA-CJ-5686-01 19 55147170 55147170 C T LILRB1 Intron 0.10 TCGA-CJ-5686-01 1 115276472 115276478 CTTTACC - CSDE1 Frame_Shift_Del p.G284Kfs*28 0.12 TCGA-CJ-5686-01 1 12321995 12321995 G T VPS13D Silent p.S484S 0.08 TCGA-CJ-5686-01 1 214818891 214818891 C G CENPF Missense_Mutation p.S1993C 0.22 possibly_damaging(0.789) TCGA-CJ-5686-01 1 45473182 45473182 C A HECTD3 Missense_Mutation p.S469I 0.24 tolerated(0.16) possibly_damaging(0.472) TCGA-CJ-5686-01 21 34099111 34099127 CATGAGACATTCTTCCT - SYNJ1 Frame_Shift_Del p.K66Ifs*40 0.10 TCGA-CJ-5686-01 22 19467681 19467681 A T CDC45 Missense_Mutation p.R18W 0.18 deleterious(0) probably_damaging(0.995) TCGA-CJ-5686-01 22 46708174 46708174 G T GTSE1 Missense_Mutation p.G300V 0.16 deleterious(0) probably_damaging(0.994) TCGA-CJ-5686-01 2 105859391 105859391 C A GPR45 Missense_Mutation p.P359Q 0.14 deleterious(0) possibly_damaging(0.889) TCGA-CJ-5686-01 2 108489172 108489172 G C RGPD4 Missense_Mutation p.G1571A 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-CJ-5686-01 2 179203777 179203777 A G OSBPL6 Missense_Mutation p.I284V 0.20 tolerated(1) benign(0.198) TCGA-CJ-5686-01 2 202700487 202700487 G T CDK15 Splice_Site p.X284_splice 0.18 TCGA-CJ-5686-01 2 209271710 209271710 G C PTH2R 5'UTR 0.06 TCGA-CJ-5686-01 2 228882779 228882779 C A SPHKAP Nonsense_Mutation p.E931* 0.19 TCGA-CJ-5686-01 2 27306232 27306232 G C EMILIN1 Missense_Mutation p.G598A 0.20 probably_damaging(0.917) TCGA-CJ-5686-01 2 9531296 9531296 C T ASAP2 Missense_Mutation p.P830L 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-CJ-5686-01 3 10191520 10191520 G - VHL Frame_Shift_Del p.K171Nfs*31 0.20 TCGA-CJ-5686-01 3 11354777 11354777 G T ATG7 Splice_Site p.X138_splice 0.19 TCGA-CJ-5686-01 3 151154637 151154637 G A IGSF10 Missense_Mutation p.S2571L 0.13 deleterious(0.03) probably_damaging(0.967) TCGA-CJ-5686-01 4 1348531 1348531 A C UVSSA Missense_Mutation p.K315Q 0.17 tolerated(0.2) benign(0.032) TCGA-CJ-5686-01 5 137426308 137426309 TC A WNT8A Frame_Shift_Del p.F201Yfs*8 0.18 TCGA-CJ-5686-01 5 176894482 176894482 C G DBN1 Silent p.V161V 0.27 TCGA-CJ-5686-01 5 79351734 79351734 C T THBS4 Missense_Mutation p.S140F 0.31 deleterious(0.03) probably_damaging(0.987) TCGA-CJ-5686-01 6 116600703 116600703 C - TSPYL1 Frame_Shift_Del p.Q98Rfs*17 0.19 TCGA-CJ-5686-01 6 32805899 32805899 G A TAP2 Silent p.L38L 0.20 TCGA-CJ-5686-01 6 38952015 38952015 G A DNAH8 Missense_Mutation p.G4112R 0.18 probably_damaging(0.995) TCGA-CJ-5686-01 6 43307260 43307261 - C ZNF318 Frame_Shift_Ins p.P1493Sfs*2 0.18 TCGA-CJ-5686-01 6 46657639 46657639 C G TDRD6 Missense_Mutation p.Q592E 0.24 tolerated(1) benign(0.012) TCGA-CJ-5686-01 6 57075110 57075110 T A RAB23 Silent p.S23S 0.14 TCGA-CJ-5686-01 6 74228230 74228230 G T EEF1A1 Silent p.V292V 0.16 TCGA-CJ-5686-01 6 88210341 88210341 A G SLC35A1 Missense_Mutation p.M104V 0.14 deleterious(0.02) benign(0.089) TCGA-CJ-5686-01 7 151181869 151181869 A T RHEB Missense_Mutation p.V49E 0.16 deleterious(0.02) probably_damaging(0.972) TCGA-CJ-5686-01 7 16655424 16655424 T C ANKMY2 Missense_Mutation p.K159R 0.18 tolerated(0.22) benign(0.019) TCGA-CJ-5686-01 7 35673462 35673462 C T HERPUD2 Splice_Site p.X354_splice 0.23 TCGA-CJ-5686-01 7 41729694 41729694 C A INHBA Missense_Mutation p.A279S 0.22 tolerated(1) benign(0.002) TCGA-CJ-5686-01 7 5529765 5529765 G A FBXL18 Intron 0.24 TCGA-CJ-5686-01 7 5529766 5529766 G A FBXL18 Intron 0.23 TCGA-CJ-5686-01 7 5529767 5529767 C A FBXL18 Intron 0.23 TCGA-CJ-5686-01 7 99956460 99956460 G A PILRB Nonsense_Mutation p.W71* 0.20 TCGA-CJ-5686-01 8 106810965 106810965 T C ZFPM2 Silent p.P251P 0.18 TCGA-CJ-5686-01 8 22034151 22034151 A G BMP1 Missense_Mutation p.Y180C 0.21 tolerated(0.05) possibly_damaging(0.517) TCGA-CJ-5686-01 8 28574199 28574199 G A EXTL3 Missense_Mutation p.S208N 0.19 tolerated(0.6) benign(0.005) TCGA-CJ-5686-01 8 56652730 56652730 T C TMEM68 Silent p.P245P 0.21 TCGA-CJ-5686-01 8 69621309 69621309 C G C8orf34 Nonsense_Mutation p.S441* 0.13 TCGA-CJ-5686-01 9 114484858 114484858 C A C9orf84 Missense_Mutation p.Q590H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CJ-5686-01 9 130865982 130865982 T A SLC25A25 Missense_Mutation p.L204Q 0.16 deleterious(0) probably_damaging(0.917) TCGA-CJ-5686-01 9 135470291 135470291 C G DDX31 Missense_Mutation p.G840R 0.19 deleterious_low_confidence(0.02) benign(0.008) TCGA-CJ-5686-01 9 140083619 140083619 G A SSNA1 Missense_Mutation p.E52K 0.29 tolerated(0.2) benign(0.187) TCGA-CJ-5686-01 X 107976255 107976258 CTGT - IRS4 Frame_Shift_Del p.D1106Afs*22 0.24 TCGA-CJ-5686-01 X 70602417 70602417 T C TAF1 Silent p.S543S 0.21 TCGA-CJ-5686-01 X 79991541 79991541 C G BRWD3 Missense_Mutation p.G287A 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-CJ-5689-01 10 103345746 103345746 G A POLL Missense_Mutation p.L95F 0.18 tolerated(0.23) benign(0.029) TCGA-CJ-5689-01 10 105174907 105174907 G - PDCD11 Frame_Shift_Del 0.10 TCGA-CJ-5689-01 10 28971419 28971419 A T BAMBI 3'UTR 0.24 TCGA-CJ-5689-01 10 62648898 62648898 C T RHOBTB1 Silent p.E176E 0.22 TCGA-CJ-5689-01 10 91098616 91098616 G A IFIT3 Silent p.E68E 0.15 TCGA-CJ-5689-01 11 111749373 111749373 C G FDXACB1 Missense_Mutation p.R79T 0.17 deleterious(0.01) possibly_damaging(0.719) TCGA-CJ-5689-01 11 119183063 119183063 C - MCAM Frame_Shift_Del p.E313Nfs*16 0.15 TCGA-CJ-5689-01 11 19180535 19180535 G C ZDHHC13 Silent p.L352L 0.04 TCGA-CJ-5689-01 11 48286316 48286316 G T OR4X1 Nonsense_Mutation p.G302* 0.15 TCGA-CJ-5689-01 11 55595203 55595203 G T OR5L2 Missense_Mutation p.R170I 0.16 tolerated(0.05) possibly_damaging(0.548) TCGA-CJ-5689-01 11 62362911 62362911 A C MTA2 Silent p.P436P 0.16 TCGA-CJ-5689-01 11 74716734 74716734 G A NEU3 Missense_Mutation p.G195S 0.30 deleterious(0) probably_damaging(1) TCGA-CJ-5689-01 11 7960207 7960207 C T OR10A3 Silent p.P287P 0.19 TCGA-CJ-5689-01 12 109313533 109313533 G A SVOP Missense_Mutation p.R331C 0.22 tolerated(0.1) probably_damaging(0.923) TCGA-CJ-5689-01 12 54967444 54967444 C G PDE1B Missense_Mutation p.H339D 0.16 deleterious(0) possibly_damaging(0.861) TCGA-CJ-5689-01 12 56642652 56642652 C G ANKRD52 Missense_Mutation p.C532S 0.22 deleterious(0.01) probably_damaging(0.958) TCGA-CJ-5689-01 12 65085322 65085322 C A RASSF3 Missense_Mutation p.T177K 0.12 tolerated(0.19) benign(0.371) TCGA-CJ-5689-01 12 66923637 66923637 C G GRIP1 Missense_Mutation p.G159A 0.05 deleterious(0.02) benign(0.038) TCGA-CJ-5689-01 13 23808783 23808783 G A SGCG Missense_Mutation p.G77R 0.16 deleterious(0) probably_damaging(1) TCGA-CJ-5689-01 13 39263796 39263796 C T FREM2 Missense_Mutation p.T772I 0.04 tolerated(0.05) benign(0.13) TCGA-CJ-5689-01 13 51509097 51509097 G C RNASEH2B Missense_Mutation p.G133A 0.36 tolerated(0.47) benign(0.002) TCGA-CJ-5689-01 13 52989875 52989875 A C VPS36 3'UTR 0.16 TCGA-CJ-5689-01 13 93879643 93879643 G A GPC6 5'UTR 0.09 TCGA-CJ-5689-01 14 104026737 104026737 A G BAG5 Silent p.Y296Y 0.29 TCGA-CJ-5689-01 15 43820125 43820125 T A MAP1A Missense_Mutation p.S2152T 0.13 possibly_damaging(0.587) TCGA-CJ-5689-01 15 70961227 70961227 T A UACA Missense_Mutation p.E599V 0.23 tolerated(0.16) possibly_damaging(0.723) TCGA-CJ-5689-01 15 70961228 70961228 C T UACA Missense_Mutation p.E599K 0.23 tolerated(0.25) benign(0.297) TCGA-CJ-5689-01 16 67861838 67861838 G A TSNAXIP1 Missense_Mutation p.R640Q 0.24 tolerated(0.17) benign(0.004) TCGA-CJ-5689-01 16 85741409 85741409 C T C16orf74 3'UTR 0.14 TCGA-CJ-5689-01 17 30348528 30348528 A G LRRC37B Silent p.L121L 0.16 TCGA-CJ-5689-01 17 30986210 30986210 G A MYO1D Silent p.Y756Y 0.05 TCGA-CJ-5689-01 17 33288728 33288728 T A ZNF830 Nonsense_Mutation p.L48* 0.06 TCGA-CJ-5689-01 17 40847716 40847716 A G CNTNAP1 Missense_Mutation p.Y1057C 0.13 tolerated(0.1) probably_damaging(0.926) TCGA-CJ-5689-01 17 7192126 7192126 G T YBX2 Missense_Mutation p.T359N 0.25 tolerated_low_confidence(0.09) benign(0.403) TCGA-CJ-5689-01 17 78919525 78919525 G A RPTOR Silent p.V1028V 0.21 TCGA-CJ-5689-01 18 10539848 10539848 G A NAPG Missense_Mutation p.M116I 0.09 tolerated(0.94) benign(0.001) TCGA-CJ-5689-01 18 54270117 54270117 C A TXNL1 3'UTR 0.15 TCGA-CJ-5689-01 18 5434058 5434058 A C EPB41L3 Missense_Mutation p.V223G 0.21 deleterious(0) probably_damaging(0.996) TCGA-CJ-5689-01 18 61064300 61064300 A G VPS4B Silent p.V353V 0.23 TCGA-CJ-5689-01 18 72250837 72250837 C G CNDP1 Silent p.T450T 0.11 TCGA-CJ-5689-01 18 77489056 77489056 G A CTDP1 Missense_Mutation p.S856N 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-CJ-5689-01 19 12127062 12127062 A C ZNF433 Missense_Mutation p.L207W 0.22 deleterious(0) possibly_damaging(0.784) TCGA-CJ-5689-01 19 2039538 2039538 C G MKNK2 3'UTR 0.14 TCGA-CJ-5689-01 19 3976486 3976486 A T EEF2 3'UTR 0.14 TCGA-CJ-5689-01 19 47422168 47422180 TTAGCCGCTCCCT A ARHGAP35 In_Frame_Del p.V79_L83delinsE 0.21 TCGA-CJ-5689-01 19 49379141 49379141 A G PPP1R15A Missense_Mutation p.T646A 0.15 tolerated(1) unknown(0) TCGA-CJ-5689-01 19 49379142 49379142 C T PPP1R15A Missense_Mutation p.T646I 0.14 deleterious(0) unknown(0) TCGA-CJ-5689-01 19 50309985 50309985 C G AP2A1 Missense_Mutation p.H968Q 0.08 tolerated(0.37) benign(0.009) TCGA-CJ-5689-01 19 681494 681494 C T FSTL3 Missense_Mutation p.H223Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-CJ-5689-01 1 12461736 12461736 G C VPS13D Missense_Mutation p.G3954R 0.06 probably_damaging(0.999) TCGA-CJ-5689-01 1 156770259 156770259 G A PRCC 3'UTR 0.17 TCGA-CJ-5689-01 1 161047393 161047393 G T PVRL4 Missense_Mutation p.R194S 0.13 deleterious(0) possibly_damaging(0.529) TCGA-CJ-5689-01 1 19568890 19568890 A T EMC1 Missense_Mutation p.L153H 0.07 deleterious(0.01) probably_damaging(0.983) TCGA-CJ-5689-01 1 197898274 197898274 C T LHX9 Missense_Mutation p.T360I 0.26 deleterious(0) possibly_damaging(0.594) TCGA-CJ-5689-01 1 20827436 20827436 C T MUL1 Missense_Mutation p.R269H 0.24 deleterious(0) possibly_damaging(0.847) TCGA-CJ-5689-01 1 232144546 232144546 G T DISC1 Missense_Mutation p.C666F 0.31 tolerated_low_confidence(0.08) benign(0) TCGA-CJ-5689-01 1 240071120 240071120 T C CHRM3 Silent p.N123N 0.19 TCGA-CJ-5689-01 1 25554003 25554003 G A SYF2 Missense_Mutation p.R133C 0.28 deleterious(0) possibly_damaging(0.668) TCGA-CJ-5689-01 1 53681713 53681713 C G C1orf123 Missense_Mutation p.E119Q 0.19 tolerated(0.16) benign(0.128) TCGA-CJ-5689-01 1 53712644 53712644 T C LRP8 3'UTR 0.26 TCGA-CJ-5689-01 1 89271182 89271182 A - PKN2 Frame_Shift_Del p.T503Hfs*8 0.16 TCGA-CJ-5689-01 20 2644188 2644190 GGA - IDH3B Nonsense_Mutation p.F80_Q81delins* 0.12 TCGA-CJ-5689-01 20 42198148 42198148 G A SGK2 Missense_Mutation p.G178R 0.22 deleterious(0) probably_damaging(1) TCGA-CJ-5689-01 20 45853070 45853070 C T ZMYND8 Silent p.K1006K 0.21 TCGA-CJ-5689-01 20 56726067 56726067 T A C20orf85 Missense_Mutation p.L16H 0.18 deleterious(0.02) possibly_damaging(0.847) TCGA-CJ-5689-01 21 38604739 38604739 T A DSCR3 Missense_Mutation p.K149M 0.21 deleterious(0.05) benign(0.166) TCGA-CJ-5689-01 21 41423943 41423943 T A DSCAM Missense_Mutation p.Q1709H 0.18 tolerated_low_confidence(0.17) possibly_damaging(0.848) TCGA-CJ-5689-01 21 44323531 44323531 T A NDUFV3 Missense_Mutation p.S137T 0.21 tolerated(0.3) benign(0.3) TCGA-CJ-5689-01 22 22550618 22550618 G A IGLV6-57 Missense_Mutation p.G99R 0.13 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-CJ-5689-01 22 36681244 36681244 C T MYH9 Silent p.K1802K 0.19 TCGA-CJ-5689-01 22 37333464 37333464 C T CSF2RB Silent p.T538T 0.13 TCGA-CJ-5689-01 2 113310370 113310370 C T POLR1B Nonsense_Mutation p.Q379* 0.14 TCGA-CJ-5689-01 2 169993989 169993989 G T LRP2 Silent p.V4511V 0.23 TCGA-CJ-5689-01 2 174047673 174047673 T G MLTK Missense_Mutation p.D113E 0.23 tolerated(0.5) probably_damaging(0.999) TCGA-CJ-5689-01 2 209142293 209142293 T A PIKFYVE Missense_Mutation p.D158E 0.23 deleterious(0) probably_damaging(0.999) TCGA-CJ-5689-01 2 238249384 238249384 A G COL6A3 Silent p.N2725N 0.17 TCGA-CJ-5689-01 2 241658613 241658613 G - KIF1A Frame_Shift_Del p.P1675Rfs*214 0.18 TCGA-CJ-5689-01 2 58386677 58386677 C T VRK2 Missense_Mutation p.T459M 0.08 tolerated_low_confidence(0.65) benign(0.001) TCGA-CJ-5689-01 2 73799563 73799563 A G ALMS1 Missense_Mutation p.D3519G 0.05 possibly_damaging(0.448) TCGA-CJ-5689-01 3 113761648 113761648 T A KIAA1407 Missense_Mutation p.E106V 0.16 deleterious(0) probably_damaging(0.998) TCGA-CJ-5689-01 3 146311712 146311712 G A PLSCR5 Nonsense_Mutation p.Q150* 0.12 TCGA-CJ-5689-01 3 23929079 23929079 C T UBE2E1 Silent p.N75N 0.05 TCGA-CJ-5689-01 3 87309185 87309185 C T POU1F1 Missense_Mutation p.M271I 0.12 tolerated(0.07) benign(0.005) TCGA-CJ-5689-01 4 114264182 114264182 G T ANK2 Nonsense_Mutation p.G1378* 0.24 TCGA-CJ-5689-01 4 53786908 53786908 C G SCFD2 Missense_Mutation p.G564A 0.19 deleterious(0.03) benign(0.092) TCGA-CJ-5689-01 4 71500209 71500209 A C ENAM Missense_Mutation p.K132T 0.24 tolerated(0.1) benign(0.022) TCGA-CJ-5689-01 5 131679522 131679522 A C SLC22A4 Silent p.A550A 0.08 TCGA-CJ-5689-01 5 37318125 37318125 T A NUP155 Missense_Mutation p.Q757L 0.05 deleterious(0.02) benign(0.348) TCGA-CJ-5689-01 5 76028201 76028201 A T F2R Nonsense_Mutation p.K51* 0.04 TCGA-CJ-5689-01 6 125144487 125144487 A T NKAIN2 3'UTR 0.23 TCGA-CJ-5689-01 6 38998266 38998266 T A DNAH8 3'UTR 0.10 TCGA-CJ-5689-01 6 39839293 39839293 T C DAAM2 Missense_Mutation p.F330S 0.05 deleterious(0) probably_damaging(0.995) TCGA-CJ-5689-01 6 45405722 45405722 C T RUNX2 Missense_Mutation p.P207S 0.18 deleterious(0) probably_damaging(0.999) TCGA-CJ-5689-01 6 75977458 75977458 A - TMEM30A Frame_Shift_Del p.Y82Ifs*18 0.15 TCGA-CJ-5689-01 7 155493488 155493488 C A RBM33 Missense_Mutation p.L197I 0.19 tolerated(0.14) benign(0.234) TCGA-CJ-5689-01 7 57529182 57529182 C G ZNF716 Missense_Mutation p.L339V 0.14 deleterious(0.02) benign(0.36) TCGA-CJ-5689-01 7 75511361 75511361 T C RHBDD2 Silent p.D131D 0.19 TCGA-CJ-5689-01 8 8185862 8185862 G T SGK223 Silent p.P810P 0.20 TCGA-CJ-5689-01 9 113562845 113562851 GAACTGC TT MUSK Frame_Shift_Del p.R729Sfs*29 0.24 TCGA-CJ-5689-01 9 130887525 130887525 A T PTGES2 Missense_Mutation p.S159T 0.15 tolerated(0.59) benign(0.019) TCGA-CJ-5689-01 9 131698736 131698736 C - PHYHD1 Frame_Shift_Del p.H110Tfs*107 0.08 TCGA-CJ-5689-01 X 22010698 22010721 ATCTCTCTTTGATTTAGGGGAACT C SMS Splice_Site p.X316_splice 0.15 TCGA-CJ-5689-01 X 73812687 73812687 C A RLIM Nonsense_Mutation p.E155* 0.13 TCGA-CJ-6027-01 10 114053509 114053509 C G TECTB Missense_Mutation p.S166C 0.28 tolerated(0.18) possibly_damaging(0.705) TCGA-CJ-6027-01 10 21124510 21124510 C A NEBL Nonsense_Mutation p.G461* 0.25 TCGA-CJ-6027-01 10 33559711 33559711 C T NRP1 Missense_Mutation p.A108T 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-CJ-6027-01 10 33559713 33559713 A T NRP1 Missense_Mutation p.I107K 0.07 deleterious(0.01) probably_damaging(0.985) TCGA-CJ-6027-01 10 88418429 88418429 C A OPN4 Missense_Mutation p.P216T 0.20 deleterious(0) probably_damaging(1) TCGA-CJ-6027-01 11 114272549 114272549 T C RBM7 Missense_Mutation p.Y76H 0.29 deleterious(0.05) benign(0.438) TCGA-CJ-6027-01 11 124180510 124180510 G A OR8D1 Silent p.V51V 0.05 TCGA-CJ-6027-01 11 47202030 47202030 C A PACSIN3 Missense_Mutation p.K141N 0.06 deleterious(0) probably_damaging(0.992) TCGA-CJ-6027-01 11 5602399 5602399 T A OR52B6 Missense_Mutation p.M98K 0.04 deleterious(0) probably_damaging(0.942) TCGA-CJ-6027-01 11 62384532 62384532 G A B3GAT3 Missense_Mutation p.P182L 0.08 tolerated(0.34) benign(0.173) TCGA-CJ-6027-01 11 65715209 65715209 C T TSGA10IP RNA 0.19 TCGA-CJ-6027-01 11 66052992 66052996 CACCT - YIF1A Frame_Shift_Del p.E166Afs*31 0.33 TCGA-CJ-6027-01 11 73753116 73753116 G T C2CD3 Silent p.S1881S 0.24 TCGA-CJ-6027-01 11 78369131 78369131 A G TENM4 Missense_Mutation p.M2761T 0.23 tolerated(0.15) benign(0.008) TCGA-CJ-6027-01 12 109907452 109907452 G T KCTD10 Missense_Mutation p.P29T 0.07 tolerated(0.4) benign(0.064) TCGA-CJ-6027-01 12 55026040 55026040 C A LACRT Nonsense_Mutation p.E80* 0.31 TCGA-CJ-6027-01 12 57036241 57036241 C A ATP5B Splice_Site p.X358_splice 0.30 TCGA-CJ-6027-01 12 6670127 6670128 - AT NOP2 Frame_Shift_Ins p.H474Afs*36 0.22 TCGA-CJ-6027-01 12 6886962 6886962 C T LAG3 Nonsense_Mutation p.Q436* 0.06 TCGA-CJ-6027-01 12 95475277 95475277 A G FGD6 3'UTR 0.25 TCGA-CJ-6027-01 13 39564969 39564970 GA - STOML3 5'UTR 0.28 TCGA-CJ-6027-01 13 51969612 51969612 A G INTS6 Missense_Mutation p.L146S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-CJ-6027-01 14 35264070 35264070 C A BAZ1A Silent p.V416V 0.26 TCGA-CJ-6027-01 14 58932590 58932590 C G KIAA0586 Missense_Mutation p.F752L 0.11 tolerated(0.69) benign(0.003) TCGA-CJ-6027-01 14 96703508 96703508 G T BDKRB2 Missense_Mutation p.A22S 0.37 tolerated_low_confidence(0.14) benign(0.086) TCGA-CJ-6027-01 14 97022676 97022676 A G PAPOLA Missense_Mutation p.T644A 0.40 tolerated(0.89) benign(0.002) TCGA-CJ-6027-01 15 40685602 40685604 ATT - KNSTRN Intron 0.20 TCGA-CJ-6027-01 15 42379578 42379578 A G PLA2G4D Missense_Mutation p.F59L 0.24 tolerated(0.77) benign(0.004) TCGA-CJ-6027-01 15 89070834 89070834 G A DET1 Missense_Mutation p.R434C 0.17 tolerated(0.14) benign(0.017) TCGA-CJ-6027-01 16 55519326 55519326 G A MMP2 Silent p.L215L 0.16 TCGA-CJ-6027-01 16 81074846 81074846 A C ATMIN Intron 0.18 TCGA-CJ-6027-01 17 18166397 18166397 C G MIEF2 Intron 0.28 TCGA-CJ-6027-01 17 38031594 38031594 G A ZPBP2 Missense_Mutation p.V266M 0.09 tolerated(0.11) possibly_damaging(0.566) TCGA-CJ-6027-01 17 43226528 43226528 A C HEXIM1 5'UTR 0.31 TCGA-CJ-6027-01 17 62850588 62850588 G T LRRC37A3 3'UTR 0.47 TCGA-CJ-6027-01 17 78090845 78090845 C T GAA Silent p.L756L 0.26 TCGA-CJ-6027-01 18 59777079 59777079 G A PIGN Missense_Mutation p.A521V 0.06 tolerated(0.08) possibly_damaging(0.745) TCGA-CJ-6027-01 19 1811645 1811645 A T ATP8B3 Missense_Mutation p.S31T 0.30 tolerated_low_confidence(0.05) benign(0.015) TCGA-CJ-6027-01 19 21608374 21608374 C T ZNF493 3'UTR 0.27 TCGA-CJ-6027-01 19 41066216 41066216 C G SPTBN4 Missense_Mutation p.T1941R 0.18 deleterious(0) probably_damaging(0.996) TCGA-CJ-6027-01 19 42462491 42462491 C T RABAC1 Missense_Mutation p.G105D 0.29 deleterious(0) probably_damaging(1) TCGA-CJ-6027-01 19 44418082 44418082 G A ZNF45 Silent p.C502C 0.28 TCGA-CJ-6027-01 19 44833818 44833818 T G ZNF112 Missense_Mutation p.K170N 0.03 tolerated(0.06) benign(0.372) TCGA-CJ-6027-01 19 58549265 58549265 G T ZSCAN1 Nonsense_Mutation p.E21* 0.39 TCGA-CJ-6027-01 19 6182803 6182803 C T ACSBG2 Silent p.V316V 0.22 TCGA-CJ-6027-01 19 8807932 8807932 G A ACTL9 Missense_Mutation p.P374S 0.22 deleterious(0.03) possibly_damaging(0.489) TCGA-CJ-6027-01 1 11210198 11210198 C T MTOR Missense_Mutation p.A1519T 0.20 deleterious(0) possibly_damaging(0.878) TCGA-CJ-6027-01 1 117568204 117568204 C T CD101 Silent p.C834C 0.23 TCGA-CJ-6027-01 1 153391770 153391770 T C S100A7A Silent p.S97S 0.23 TCGA-CJ-6027-01 1 183177097 183177097 T A LAMC2 Missense_Mutation p.L54H 0.26 deleterious(0) probably_damaging(0.989) TCGA-CJ-6027-01 1 183177098 183177098 C A LAMC2 Silent p.L54L 0.26 TCGA-CJ-6027-01 1 19419845 19419866 TGCATTCTGGGTGATCCCCTTC - UBR4 Frame_Shift_Del p.Q4684Hfs*5 0.26 TCGA-CJ-6027-01 1 201869657 201869657 G A LMOD1 Missense_Mutation p.R162W 0.28 possibly_damaging(0.8) TCGA-CJ-6027-01 1 205035032 205035032 T A CNTN2 Missense_Mutation p.V604D 0.35 deleterious(0) probably_damaging(0.984) TCGA-CJ-6027-01 1 231665067 231665067 A T TSNAX Missense_Mutation p.D28V 0.04 deleterious(0.01) benign(0.104) TCGA-CJ-6027-01 1 28800469 28800469 C A PHACTR4 Silent p.P419P 0.36 TCGA-CJ-6027-01 1 40209514 40209514 G T PPIE Missense_Mutation p.W101L 0.18 tolerated(0.06) probably_damaging(0.995) TCGA-CJ-6027-01 1 55509579 55509579 T A PCSK9 Missense_Mutation p.S91T 0.15 tolerated(0.48) benign(0) TCGA-CJ-6027-01 1 55509580 55509580 C T PCSK9 Missense_Mutation p.S91L 0.15 tolerated(0.36) benign(0.002) TCGA-CJ-6027-01 1 62237112 62237112 A G INADL Silent p.R178R 0.31 TCGA-CJ-6027-01 1 67705899 67705899 C G IL23R Missense_Mutation p.I361M 0.15 tolerated(0.06) benign(0.094) TCGA-CJ-6027-01 1 87200796 87200796 A T SH3GLB1 Missense_Mutation p.E253V 0.23 deleterious(0) probably_damaging(0.972) TCGA-CJ-6027-01 1 89236095 89236095 G T PKN2 Missense_Mutation p.V189F 0.20 tolerated(0.4) benign(0.02) TCGA-CJ-6027-01 20 33763988 33763988 T A PROCR Missense_Mutation p.C114S 0.17 deleterious(0.01) probably_damaging(1) TCGA-CJ-6027-01 20 33875097 33875099 CTT - FAM83C In_Frame_Del p.K495del 0.35 TCGA-CJ-6027-01 20 35238021 35238021 C T C20orf24 Intron 0.23 TCGA-CJ-6027-01 20 44515557 44515557 G A SPATA25 Missense_Mutation p.H95Y 0.23 tolerated_low_confidence(1) benign(0.002) TCGA-CJ-6027-01 21 37736413 37736413 G A MORC3 Missense_Mutation p.R492Q 0.23 tolerated(0.6) benign(0.002) TCGA-CJ-6027-01 2 10186515 10186515 T C KLF11 Missense_Mutation p.L94P 0.16 tolerated(0.13) benign(0.012) TCGA-CJ-6027-01 2 163099945 163099945 G C FAP 5'UTR 0.26 TCGA-CJ-6027-01 2 204045216 204045217 GT - NBEAL1 Frame_Shift_Del p.E2163Dfs*9 0.26 TCGA-CJ-6027-01 2 217342998 217342998 A G SMARCAL1 Silent p.T867T 0.35 TCGA-CJ-6027-01 2 27317803 27317803 G A KHK Intron 0.26 TCGA-CJ-6027-01 2 44073354 44073354 A G ABCG8 Missense_Mutation p.T76A 0.26 tolerated(0.77) benign(0.003) TCGA-CJ-6027-01 2 85581632 85581632 A T RETSAT 5'UTR 0.24 TCGA-CJ-6027-01 2 86266475 86266476 - GCTTCTTCA POLR1A In_Frame_Ins p.L1281_K1283dup 0.09 TCGA-CJ-6027-01 3 10183797 10183797 T C VHL Missense_Mutation p.L89P 0.20 deleterious(0) probably_damaging(0.99) TCGA-CJ-6027-01 3 128200752 128200753 - T GATA2 Frame_Shift_Ins p.N351Kfs*33 0.30 TCGA-CJ-6027-01 3 157154654 157154654 C T PTX3 5'UTR 0.35 TCGA-CJ-6027-01 3 52663010 52663010 A - PBRM1 Frame_Shift_Del p.L448Wfs*5 0.20 TCGA-CJ-6027-01 4 145635414 145635414 T C HHIP Silent p.S487S 0.26 TCGA-CJ-6027-01 4 159790324 159790324 G A FNIP2 Missense_Mutation p.E846K 0.16 tolerated(0.57) benign(0.017) TCGA-CJ-6027-01 4 184618916 184618916 A G TRAPPC11 Missense_Mutation p.I927V 0.21 tolerated(0.1) benign(0.001) TCGA-CJ-6027-01 4 41015685 41015685 G A APBB2 Silent p.I250I 0.25 TCGA-CJ-6027-01 4 47408773 47408774 AA - GABRB1 Frame_Shift_Del p.K304Sfs*3 0.19 TCGA-CJ-6027-01 4 77084506 77084506 G A SCARB2 Nonsense_Mutation p.R424* 0.20 TCGA-CJ-6027-01 4 90170546 90170546 G T GPRIN3 Missense_Mutation p.T239N 0.22 deleterious(0.02) benign(0.144) TCGA-CJ-6027-01 5 102502993 102502993 C G PPIP5K2 Missense_Mutation p.I677M 0.27 deleterious(0) probably_damaging(0.986) TCGA-CJ-6027-01 5 131630693 131630693 C T SLC22A4 Silent p.V128V 0.33 TCGA-CJ-6027-01 5 137542357 137542357 A G CDC23 Missense_Mutation p.M84T 0.25 tolerated(0.31) benign(0.006) TCGA-CJ-6027-01 5 140732064 140732064 A C PCDHGB1 Missense_Mutation p.Y746S 0.10 deleterious(0) probably_damaging(0.968) TCGA-CJ-6027-01 5 145616911 145616911 A G RBM27 Missense_Mutation p.T399A 0.05 tolerated_low_confidence(0.07) probably_damaging(0.989) TCGA-CJ-6027-01 5 160115094 160115094 G A ATP10B 5'UTR 0.43 TCGA-CJ-6027-01 5 32390443 32390443 G C ZFR Missense_Mutation p.P694A 0.22 deleterious(0.02) unknown(0) TCGA-CJ-6027-01 5 80508333 80508333 G A RASGRF2 Missense_Mutation p.R1102K 0.20 deleterious(0.04) possibly_damaging(0.664) TCGA-CJ-6027-01 6 11213548 11213548 A G NEDD9 Missense_Mutation p.I142T 0.31 tolerated(0.42) benign(0.001) TCGA-CJ-6027-01 6 36177669 36177669 G A BRPF3 Missense_Mutation p.A615T 0.42 tolerated(0.25) benign(0.152) TCGA-CJ-6027-01 7 127252031 127252031 G T PAX4 Missense_Mutation p.P239T 0.35 tolerated(0.06) benign(0.01) TCGA-CJ-6027-01 7 158531737 158531737 A T ESYT2 Silent p.L775L 0.06 TCGA-CJ-6027-01 7 30931623 30931623 G A FAM188B 3'UTR 0.27 TCGA-CJ-6027-01 7 32584314 32584314 T - AVL9 Frame_Shift_Del p.H77Tfs*26 0.22 TCGA-CJ-6027-01 7 35057549 35057549 C G DPY19L1 Missense_Mutation p.R46P 0.22 deleterious(0) probably_damaging(0.982) TCGA-CJ-6027-01 7 40027747 40027748 - A CDK13 Frame_Shift_Ins p.T588Nfs*31 0.11 TCGA-CJ-6027-01 7 47873983 47873983 C A PKD1L1 Missense_Mutation p.G2043V 0.17 tolerated(0.06) benign(0.002) TCGA-CJ-6027-01 7 55755510 55755510 A G RNU6-389P 3'Flank 0.32 TCGA-CJ-6027-01 8 144999885 144999885 C G PLEC Silent p.R1541R 0.48 TCGA-CJ-6027-01 9 102590586 102590586 G T NR4A3 Nonsense_Mutation p.E99* 0.25 TCGA-CJ-6027-01 9 135251296 135251297 CT - TTF1 3'UTR 0.50 TCGA-CJ-6027-01 9 95021264 95021264 A T IARS Missense_Mutation p.S630T 0.20 deleterious(0) probably_damaging(1) TCGA-CJ-6027-01 X 129289191 129289191 G A AIFM1 Intron 0.54 TCGA-CJ-6027-01 X 41333572 41333572 G A NYX Missense_Mutation p.S289N 0.08 tolerated(0.2) benign(0.11) TCGA-CJ-6027-01 X 48674608 48674608 C T HDAC6 Silent p.G518G 0.44 TCGA-CJ-6027-01 X 66788741 66788741 A T AR Intron 0.45 TCGA-CJ-6027-01 X 76952169 76952169 T A ATRX Missense_Mutation p.Y89F 0.59 probably_damaging(0.986) TCGA-CJ-6027-01 Y 9305977 9305977 C T TSPY1 Silent p.F211F 0.30 TCGA-CJ-6028-01 10 332271 332271 C T DIP2C Missense_Mutation p.R1354Q 0.14 tolerated(0.05) possibly_damaging(0.788) TCGA-CJ-6028-01 10 445048 445049 - T DIP2C Frame_Shift_Ins p.D421Rfs*22 0.19 TCGA-CJ-6028-01 10 99640010 99640010 G A CRTAC1 Silent p.C605C 0.10 TCGA-CJ-6028-01 11 123908892 123908892 C T OR10G7 Missense_Mutation p.V273I 0.32 tolerated(0.44) benign(0.03) TCGA-CJ-6028-01 11 123988900 123988900 G A VWA5A Missense_Mutation p.R84H 0.10 tolerated(0.91) benign(0.031) TCGA-CJ-6028-01 11 28058129 28058129 T - KIF18A Frame_Shift_Del p.G678Dfs*5 0.22 TCGA-CJ-6028-01 11 32953488 32953488 G C QSER1 Missense_Mutation p.L99F 0.09 deleterious(0) possibly_damaging(0.826) TCGA-CJ-6028-01 11 55579228 55579228 G A OR5L1 Missense_Mutation p.G96R 0.11 deleterious(0.01) benign(0.053) TCGA-CJ-6028-01 11 55681565 55681565 C T OR5W2 Missense_Mutation p.R165H 0.17 tolerated(0.23) benign(0.068) TCGA-CJ-6028-01 12 125396407 125396407 C G UBC Missense_Mutation p.K637N 0.04 deleterious(0) possibly_damaging(0.666) TCGA-CJ-6028-01 12 43822466 43822466 C A ADAMTS20 Missense_Mutation p.G1209V 0.11 deleterious(0.01) possibly_damaging(0.652) TCGA-CJ-6028-01 12 9345314 9345314 A C PZP Missense_Mutation p.L426V 0.06 tolerated(0.49) benign(0.004) TCGA-CJ-6028-01 13 113485756 113485756 G A ATP11A Missense_Mutation p.C430Y 0.16 tolerated(0.41) benign(0.159) TCGA-CJ-6028-01 14 20345133 20345133 C A OR4K2 Missense_Mutation p.A236D 0.04 deleterious(0.01) probably_damaging(0.962) TCGA-CJ-6028-01 14 23310798 23310798 G T MMP14 Missense_Mutation p.Q69H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CJ-6028-01 15 42652148 42652148 C T CAPN3 Missense_Mutation p.R49C 0.17 deleterious(0) probably_damaging(1) TCGA-CJ-6028-01 15 49420221 49420221 G A COPS2 Nonsense_Mutation p.R427* 0.07 TCGA-CJ-6028-01 16 15129348 15129348 A G PDXDC1 Missense_Mutation p.Q682R 0.16 deleterious(0) probably_damaging(0.961) TCGA-CJ-6028-01 16 20043222 20043222 C T GPR139 Silent p.T299T 0.03 TCGA-CJ-6028-01 16 67692130 67692130 G A ACD Missense_Mutation p.A408V 0.17 tolerated(0.17) benign(0.035) TCGA-CJ-6028-01 17 46128663 46128663 C A NFE2L1 Silent p.T61T 0.14 TCGA-CJ-6028-01 19 1399165 1399165 C - GAMT Frame_Shift_Del p.E141Rfs*20 0.10 TCGA-CJ-6028-01 19 22270830 22270831 - T ZNF257 Frame_Shift_Ins p.Q96Pfs*9 0.12 TCGA-CJ-6028-01 19 40720964 40720964 G T MAP3K10 Missense_Mutation p.R877L 0.18 deleterious(0) probably_damaging(0.997) TCGA-CJ-6028-01 19 44160640 44160640 C T PLAUR Missense_Mutation p.G155S 0.09 tolerated(0.71) benign(0.291) TCGA-CJ-6028-01 19 56204133 56204133 C G EPN1 Missense_Mutation p.P469R 0.31 deleterious(0.05) probably_damaging(0.964) TCGA-CJ-6028-01 1 111857933 111857933 T C CHIA Missense_Mutation p.F119S 0.06 deleterious(0) probably_damaging(1) TCGA-CJ-6028-01 1 113124710 113124710 G A ST7L Missense_Mutation p.P325S 0.12 tolerated(0.78) possibly_damaging(0.651) TCGA-CJ-6028-01 1 113124711 113124711 A T ST7L Silent p.P324P 0.11 TCGA-CJ-6028-01 1 114454408 114454408 G C DCLRE1B Missense_Mutation p.K398N 0.23 deleterious_low_confidence(0.02) benign(0.202) TCGA-CJ-6028-01 1 157789883 157789883 C T FCRL1 5'UTR 0.08 TCGA-CJ-6028-01 1 158390417 158390417 C A OR10K2 Missense_Mutation p.K80N 0.10 tolerated(0.17) probably_damaging(0.999) TCGA-CJ-6028-01 1 190068174 190068174 C T BRINP3 Silent p.S425S 0.23 TCGA-CJ-6028-01 1 203465310 203465310 C T OPTC Silent p.V59V 0.06 TCGA-CJ-6028-01 1 220318982 220318982 C T IARS2 Silent p.L961L 0.16 TCGA-CJ-6028-01 1 228004909 228004909 G T PRSS38 Splice_Site p.X104_splice 0.09 TCGA-CJ-6028-01 1 235950642 235950643 - T LYST Frame_Shift_Ins p.A1574Sfs*8 0.18 TCGA-CJ-6028-01 1 38272663 38272663 G A C1orf122 5'Flank 0.22 TCGA-CJ-6028-01 1 46656513 46656513 T C POMGNT1 Intron 0.14 TCGA-CJ-6028-01 20 40727124 40727137 CCAGAAGTCTGCCA - PTPRT Frame_Shift_Del p.V1257Efs*16 0.21 TCGA-CJ-6028-01 22 35785885 35785885 C A HMOX1 Missense_Mutation p.T222N 0.12 tolerated(0.19) benign(0) TCGA-CJ-6028-01 2 128185973 128185973 C A PROC Missense_Mutation p.D279E 0.30 tolerated(0.23) benign(0.007) TCGA-CJ-6028-01 2 220338227 220338227 C A SPEG Silent p.G1383G 0.15 TCGA-CJ-6028-01 2 53941688 53941688 G A ASB3 Silent p.N306N 0.04 TCGA-CJ-6028-01 2 74438783 74438783 G A MTHFD2 Intron 0.11 TCGA-CJ-6028-01 2 80782891 80782891 G T CTNNA2 Silent p.R538R 0.11 TCGA-CJ-6028-01 2 84780110 84780110 G C DNAH6 Missense_Mutation p.M518I 0.16 tolerated(1) benign(0) TCGA-CJ-6028-01 2 89161488 89161488 G A IGKC 5'Flank 0.15 TCGA-CJ-6028-01 3 126708047 126708047 G A PLXNA1 Missense_Mutation p.R204H 0.15 deleterious(0) probably_damaging(1) TCGA-CJ-6028-01 3 4821290 4821290 C T ITPR1 Silent p.N2101N 0.06 TCGA-CJ-6028-01 4 134071474 134071474 G A PCDH10 Missense_Mutation p.R60K 0.15 tolerated(0.53) probably_damaging(0.989) TCGA-CJ-6028-01 4 152592228 152592228 G - PET112 3'UTR 0.14 TCGA-CJ-6028-01 4 71201085 71201085 C A CABS1 Missense_Mutation p.S110Y 0.05 tolerated(0.52) benign(0.041) TCGA-CJ-6028-01 5 130834154 130834154 G T RAPGEF6 Silent p.I467I 0.04 TCGA-CJ-6028-01 5 140865503 140865503 G T PCDHGC4 Missense_Mutation p.A255S 0.09 tolerated(0.79) possibly_damaging(0.5) TCGA-CJ-6028-01 5 156671410 156671410 G A ITK Silent p.E457E 0.05 TCGA-CJ-6028-01 5 168093623 168093623 C G SLIT3 Missense_Mutation p.A1470P 0.18 tolerated(0.09) possibly_damaging(0.623) TCGA-CJ-6028-01 5 179745870 179745870 C T GFPT2 Missense_Mutation p.R294Q 0.24 deleterious(0.03) benign(0.223) TCGA-CJ-6028-01 5 61649100 61649100 A G KIF2A Splice_Site p.X153_splice 0.21 TCGA-CJ-6028-01 6 149855873 149855873 C T PPIL4 Missense_Mutation p.D168N 0.09 tolerated(0.07) probably_damaging(0.979) TCGA-CJ-6028-01 6 160113748 160113748 G T SOD2 Silent p.A57A 0.15 TCGA-CJ-6028-01 6 17626234 17626234 T C NUP153 Missense_Mutation p.S1236G 0.07 tolerated(0.11) benign(0.033) TCGA-CJ-6028-01 6 36922579 36922579 C T PI16 Silent p.L15L 0.13 TCGA-CJ-6028-01 6 73830249 73830249 T C KCNQ5 Missense_Mutation p.I390T 0.05 tolerated(0.5) benign(0.007) TCGA-CJ-6028-01 6 88218885 88218885 T C SLC35A1 Missense_Mutation p.L293S 0.12 deleterious(0) benign(0.18) TCGA-CJ-6028-01 6 96053676 96053676 C G MANEA Missense_Mutation p.L262V 0.19 deleterious(0.05) possibly_damaging(0.797) TCGA-CJ-6028-01 7 23826468 23826468 G A STK31 Missense_Mutation p.M804I 0.25 tolerated(0.06) benign(0.004) TCGA-CJ-6028-01 7 44796728 44796728 G A ZMIZ2 Silent p.G116G 0.23 TCGA-CJ-6028-01 7 65160100 65160100 C - INTS4L2 RNA 0.20 TCGA-CJ-6028-01 8 144550433 144550433 G C ZC3H3 Silent p.T707T 0.21 TCGA-CJ-6028-01 8 144920929 144920929 G A NRBP2 Nonsense_Mutation p.Q255* 0.16 TCGA-CJ-6028-01 8 67748071 67748071 A G SGK3 Missense_Mutation p.N200S 0.05 deleterious(0.01) possibly_damaging(0.694) TCGA-CJ-6028-01 8 97258647 97258647 G A MTERFD1 Missense_Mutation p.A238V 0.08 tolerated(0.22) benign(0.016) TCGA-CJ-6028-01 9 21217253 21217253 A C IFNA16 Missense_Mutation p.S18A 0.11 tolerated(0.23) benign(0.008) TCGA-CJ-6028-01 9 37733482 37733482 A G FRMPD1 Silent p.G336G 0.16 TCGA-CJ-6028-01 9 74863196 74863196 C G GDA Missense_Mutation p.R435G 0.10 deleterious(0) probably_damaging(0.998) TCGA-CJ-6028-01 X 113949683 113949683 G T HTR2C Intron 0.16 TCGA-CJ-6028-01 X 135570317 135570317 C A BRS3 Nonsense_Mutation p.S15* 0.13 TCGA-CJ-6028-01 X 27997690 27997690 C T DCAF8L1 Missense_Mutation p.E588K 0.23 deleterious(0.02) benign(0.433) TCGA-CJ-6030-01 10 123846868 123846868 T C TACC2 Missense_Mutation p.F1618S 0.22 benign(0.005) TCGA-CJ-6030-01 10 128974169 128974169 G A FAM196A Missense_Mutation p.A164V 0.24 tolerated(0.05) benign(0.035) TCGA-CJ-6030-01 10 129913433 129913433 A C MKI67 Silent p.T413T 0.15 TCGA-CJ-6030-01 10 133930691 133930691 G C JAKMIP3 Missense_Mutation p.E82D 0.23 tolerated(0.06) benign(0.212) TCGA-CJ-6030-01 10 70227941 70227941 C T DNA2 Missense_Mutation p.G213D 0.25 deleterious(0) probably_damaging(1) TCGA-CJ-6030-01 10 75549747 75549747 C T ZSWIM8 Missense_Mutation p.L258F 0.14 deleterious(0) probably_damaging(0.994) TCGA-CJ-6030-01 10 97607250 97607250 T C ENTPD1 Silent p.Y299Y 0.19 TCGA-CJ-6030-01 11 47828687 47828687 G A NUP160 Missense_Mutation p.S794F 0.25 tolerated(0.24) benign(0.097) TCGA-CJ-6030-01 11 66287216 66287216 C G BBS1 Silent p.A240A 0.16 TCGA-CJ-6030-01 12 57560827 57560833 GTGGTAA - LRP1 Splice_Site p.X971_splice 0.20 TCGA-CJ-6030-01 12 64377845 64377845 A C SRGAP1 Missense_Mutation p.E62D 0.20 tolerated(0.26) benign(0.107) TCGA-CJ-6030-01 12 64521397 64521397 C - SRGAP1 Frame_Shift_Del p.Q812Kfs*22 0.26 TCGA-CJ-6030-01 12 64828368 64828368 G T XPOT Missense_Mutation p.C845F 0.14 deleterious(0) probably_damaging(0.991) TCGA-CJ-6030-01 12 8904578 8904578 G A RIMKLB Missense_Mutation p.M144I 0.25 tolerated(0.26) probably_damaging(0.93) TCGA-CJ-6030-01 13 113176789 113176789 A - TUBGCP3 Frame_Shift_Del p.Q531Rfs*32 0.20 TCGA-CJ-6030-01 13 25743823 25743823 C T AMER2 Silent p.L645L 0.22 TCGA-CJ-6030-01 13 70281831 70281831 C T KLHL1 Missense_Mutation p.V705I 0.24 tolerated(0.06) possibly_damaging(0.576) TCGA-CJ-6030-01 13 73335571 73335571 T C DIS3 Missense_Mutation p.Y867C 0.24 deleterious(0) probably_damaging(0.966) TCGA-CJ-6030-01 13 86370298 86370298 G T SLITRK6 Missense_Mutation p.Q116K 0.24 tolerated(0.54) benign(0.001) TCGA-CJ-6030-01 14 21796727 21796727 C T RPGRIP1 Nonsense_Mutation p.Q1014* 0.17 TCGA-CJ-6030-01 15 42480038 42480038 T A VPS39 Missense_Mutation p.E120V 0.21 deleterious(0.04) benign(0.039) TCGA-CJ-6030-01 15 42695072 42695072 C T CAPN3 Silent p.N539N 0.28 TCGA-CJ-6030-01 15 49301485 49301485 G C SECISBP2L Missense_Mutation p.P652R 0.25 deleterious(0) probably_damaging(0.999) TCGA-CJ-6030-01 15 49868999 49868999 A T FAM227B Missense_Mutation p.L162Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-CJ-6030-01 15 72645420 72645420 G T HEXA Missense_Mutation p.L187M 0.17 deleterious(0.01) possibly_damaging(0.806) TCGA-CJ-6030-01 15 99672128 99672128 T C SYNM Missense_Mutation p.I1187T 0.31 tolerated(0.21) benign(0.007) TCGA-CJ-6030-01 16 1827783 1827783 C T SPSB3 Missense_Mutation p.G229D 0.06 deleterious(0) probably_damaging(1) TCGA-CJ-6030-01 16 30569111 30569111 A C ZNF764 Missense_Mutation p.W85G 0.21 deleterious(0.02) benign(0.085) TCGA-CJ-6030-01 16 30749422 30749422 A T SRCAP Silent p.P2687P 0.17 TCGA-CJ-6030-01 17 37922736 37922736 G T IKZF3 Silent p.R279R 0.20 TCGA-CJ-6030-01 17 37922737 37922737 C G IKZF3 Missense_Mutation p.R279P 0.20 deleterious(0.03) possibly_damaging(0.796) TCGA-CJ-6030-01 17 46135813 46135813 C G NFE2L1 Missense_Mutation p.L377V 0.21 tolerated(0.06) benign(0.007) TCGA-CJ-6030-01 17 60059957 60059957 T - MED13 Frame_Shift_Del p.N1136Tfs*11 0.19 TCGA-CJ-6030-01 17 78445540 78445540 G T NPTX1 Missense_Mutation p.Q357K 0.27 deleterious(0) possibly_damaging(0.902) TCGA-CJ-6030-01 17 80443460 80443460 G T NARF Missense_Mutation p.Q353H 0.25 deleterious(0) probably_damaging(0.926) TCGA-CJ-6030-01 19 3281241 3281241 G A CELF5 Silent p.K216K 0.17 TCGA-CJ-6030-01 19 36003325 36003325 C T DMKN Missense_Mutation p.G228R 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-CJ-6030-01 19 41627951 41627951 C T CYP2F1 Silent p.I245I 0.37 TCGA-CJ-6030-01 19 43967403 43967403 C T LYPD3 Missense_Mutation p.C140Y 0.28 deleterious(0) probably_damaging(0.989) TCGA-CJ-6030-01 19 44376785 44376785 T - ZNF404 Frame_Shift_Del p.E527Dfs*25 0.29 TCGA-CJ-6030-01 19 54876460 54876460 G A LAIR1 5'UTR 0.11 TCGA-CJ-6030-01 19 8194141 8194141 G C FBN3 Nonsense_Mutation p.S718* 0.23 TCGA-CJ-6030-01 1 103405991 103405991 C A COL11A1 Splice_Site p.X1093_splice 0.29 TCGA-CJ-6030-01 1 111437650 111437650 G C CD53 Missense_Mutation p.K132N 0.21 deleterious(0.02) possibly_damaging(0.58) TCGA-CJ-6030-01 1 111494385 111494385 A G LRIF1 Missense_Mutation p.V374A 0.28 tolerated(0.25) possibly_damaging(0.728) TCGA-CJ-6030-01 1 114193718 114193718 A - MAGI3 Frame_Shift_Del p.D777Vfs*17 0.13 TCGA-CJ-6030-01 1 153949705 153949705 A T JTB Silent p.P8P 0.23 TCGA-CJ-6030-01 1 158582749 158582749 T C SPTA1 Missense_Mutation p.K2331R 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-CJ-6030-01 1 167893736 167893736 C T MPC2 Nonsense_Mutation p.W50* 0.24 TCGA-CJ-6030-01 1 168153162 168153162 C T TIPRL Missense_Mutation p.P43S 0.18 deleterious(0) probably_damaging(0.997) TCGA-CJ-6030-01 1 177906454 177906454 A G SEC16B Missense_Mutation p.S800P 0.32 tolerated(0.14) benign(0.037) TCGA-CJ-6030-01 1 186023105 186023105 T - HMCN1 Frame_Shift_Del p.L2284Cfs*9 0.18 TCGA-CJ-6030-01 1 203013203 203013203 C A PPFIA4 Missense_Mutation p.H161N 0.23 deleterious(0) probably_damaging(0.999) TCGA-CJ-6030-01 1 211542827 211542827 G A TRAF5 Missense_Mutation p.E275K 0.17 tolerated(0.21) benign(0.13) TCGA-CJ-6030-01 1 220445640 220445640 G T RAB3GAP2 Missense_Mutation p.L14I 0.41 tolerated(0.29) benign(0.027) TCGA-CJ-6030-01 1 232943660 232943660 T - MAP10 Frame_Shift_Del p.T965Qfs*18 0.18 TCGA-CJ-6030-01 1 241797696 241797696 A T CHML Missense_Mutation p.V458E 0.27 deleterious(0) probably_damaging(0.992) TCGA-CJ-6030-01 1 247921449 247921449 G C OR1C1 Missense_Mutation p.T87S 0.22 tolerated(0.73) benign(0.004) TCGA-CJ-6030-01 1 53237222 53237222 G C ZYG11B Missense_Mutation p.D243H 0.22 deleterious(0) probably_damaging(0.948) TCGA-CJ-6030-01 1 54332003 54332003 G A YIPF1 Missense_Mutation p.A234V 0.05 deleterious(0) probably_damaging(0.955) TCGA-CJ-6030-01 1 6212526 6212526 G A CHD5 Silent p.A272A 0.42 TCGA-CJ-6030-01 1 94476403 94476403 G T ABCA4 Nonsense_Mutation p.Y1889* 0.22 TCGA-CJ-6030-01 1 94564377 94564377 G T ABCA4 Missense_Mutation p.N247K 0.22 deleterious(0) possibly_damaging(0.745) TCGA-CJ-6030-01 20 34309720 34309720 G - RBM39 Frame_Shift_Del p.S256Yfs*6 0.19 TCGA-CJ-6030-01 20 3897581 3897581 A C PANK2 Missense_Mutation p.N474H 0.17 tolerated(0.16) benign(0.149) TCGA-CJ-6030-01 20 56090853 56090853 C T CTCFL Missense_Mutation p.G366E 0.18 deleterious(0) probably_damaging(0.999) TCGA-CJ-6030-01 21 37721695 37721695 T C MORC3 Silent p.T364T 0.24 TCGA-CJ-6030-01 21 46066342 46066342 C T KRTAP10-11 5'UTR 0.20 TCGA-CJ-6030-01 22 24143192 24143192 T A SMARCB1 Missense_Mutation p.L142I 0.16 deleterious(0) probably_damaging(0.945) TCGA-CJ-6030-01 22 30856107 30856107 G T SEC14L3 Silent p.T368T 0.18 TCGA-CJ-6030-01 22 35815920 35815920 A C MCM5 Missense_Mutation p.K583Q 0.22 tolerated(0.33) benign(0.075) TCGA-CJ-6030-01 22 40719353 40719353 G C TNRC6B 3'UTR 0.39 TCGA-CJ-6030-01 22 41572994 41572994 A G EP300 Missense_Mutation p.K1760R 0.21 possibly_damaging(0.739) TCGA-CJ-6030-01 2 128867214 128867214 G A UGGT1 Missense_Mutation p.A139T 0.23 tolerated(0.15) benign(0.003) TCGA-CJ-6030-01 2 128867224 128867224 C A UGGT1 Missense_Mutation p.P142H 0.22 tolerated(0.08) benign(0.043) TCGA-CJ-6030-01 2 155099221 155099221 G T GALNT13 Missense_Mutation p.K163N 0.15 tolerated(0.05) possibly_damaging(0.526) TCGA-CJ-6030-01 2 165557144 165557144 C T COBLL1 Missense_Mutation p.D489N 0.18 tolerated(0.06) benign(0.32) TCGA-CJ-6030-01 2 178084035 178084035 A C HNRNPA3 3'UTR 0.25 TCGA-CJ-6030-01 2 201776015 201776015 A T ORC2 3'UTR 0.21 TCGA-CJ-6030-01 2 220465991 220465991 C T STK11IP Silent p.S43S 0.26 TCGA-CJ-6030-01 2 230642131 230642131 G T TRIP12 Nonsense_Mutation p.S1735* 0.22 TCGA-CJ-6030-01 3 100060002 100060002 A - NIT2 Frame_Shift_Del p.K112Rfs*21 0.14 TCGA-CJ-6030-01 3 10188215 10188215 A G VHL Missense_Mutation p.R120G 0.30 deleterious(0) probably_damaging(0.982) TCGA-CJ-6030-01 3 128998744 128998744 C T HMCES Silent p.L57L 0.21 TCGA-CJ-6030-01 3 130285927 130285927 A G COL6A6 Missense_Mutation p.E555G 0.23 tolerated(0.09) benign(0.02) TCGA-CJ-6030-01 3 132193851 132193851 A G DNAJC13 Silent p.E789E 0.18 TCGA-CJ-6030-01 3 138664421 138664421 A T FOXL2 3'UTR 0.15 TCGA-CJ-6030-01 3 150301775 150301775 A T EIF2A 3'UTR 0.40 TCGA-CJ-6030-01 3 196051159 196051159 G A TM4SF19 Silent p.F144F 0.18 TCGA-CJ-6030-01 3 46063001 46063001 C T XCR1 Missense_Mutation p.V147M 0.43 tolerated(0.1) benign(0.238) TCGA-CJ-6030-01 3 50324295 50324295 T A LSMEM2 Splice_Site p.X121_splice 0.37 TCGA-CJ-6030-01 3 52696252 52696253 - C PBRM1 Frame_Shift_Ins p.D142Gfs*9 0.27 TCGA-CJ-6030-01 4 56435977 56435977 T C PDCL2 Silent p.G90G 0.22 TCGA-CJ-6030-01 4 65274994 65274994 G C TECRL Missense_Mutation p.L26V 0.22 tolerated_low_confidence(1) benign(0.004) TCGA-CJ-6030-01 4 65274995 65274995 T A TECRL Silent p.I25I 0.22 TCGA-CJ-6030-01 4 70707775 70707775 T C SULT1E1 Silent p.K274K 0.20 TCGA-CJ-6030-01 4 77661527 77661527 C G SHROOM3 Missense_Mutation p.S734C 0.26 tolerated(0.06) benign(0.071) TCGA-CJ-6030-01 4 98761954 98761954 G A STPG2 Missense_Mutation p.R392W 0.26 deleterious(0.02) probably_damaging(1) TCGA-CJ-6030-01 5 102513641 102513641 A C PPIP5K2 Missense_Mutation p.N905T 0.23 deleterious(0.05) benign(0.105) TCGA-CJ-6030-01 5 126158526 126158526 C T LMNB1 Silent p.V480V 0.12 TCGA-CJ-6030-01 5 162918247 162918249 GTA TT HMMR 3'UTR 0.11 TCGA-CJ-6030-01 5 176720945 176720945 C T NSD1 Silent p.F2192F 0.26 TCGA-CJ-6030-01 5 36177323 36177323 A T SKP2 Missense_Mutation p.E330D 0.29 tolerated(0.19) benign(0.051) TCGA-CJ-6030-01 5 50685530 50685530 C T ISL1 Nonsense_Mutation p.Q177* 0.25 TCGA-CJ-6030-01 5 5461745 5461745 A - KIAA0947 Frame_Shift_Del p.D767Ifs*5 0.22 TCGA-CJ-6030-01 5 70785431 70785431 G A BDP1 Missense_Mutation p.A472T 0.22 tolerated(0.94) benign(0.006) TCGA-CJ-6030-01 5 74865216 74865216 A G POLK Missense_Mutation p.I103V 0.17 deleterious(0) possibly_damaging(0.573) TCGA-CJ-6030-01 5 89969937 89969938 - T GPR98 Frame_Shift_Ins p.S1667Ffs*22 0.24 TCGA-CJ-6030-01 6 117589510 117589513 TCCC CCCCG VGLL2 Frame_Shift_Ins p.S83Pfs*19 0.11 TCGA-CJ-6030-01 6 137528120 137528120 G A IFNGR1 Silent p.T60T 0.21 TCGA-CJ-6030-01 6 26501821 26501822 - T BTN1A1 Frame_Shift_Ins p.F29Lfs*2 0.22 TCGA-CJ-6030-01 6 30688293 30688293 A C TUBB Missense_Mutation p.I4L 0.23 deleterious_low_confidence(0.02) benign(0.079) TCGA-CJ-6030-01 6 31594808 31594808 G A PRRC2A Missense_Mutation p.G375S 0.13 unknown(0) TCGA-CJ-6030-01 6 31627604 31627604 T A C6orf47 Missense_Mutation p.S41C 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CJ-6030-01 6 32187443 32187443 C A NOTCH4 Missense_Mutation p.C479F 0.17 deleterious(0) probably_damaging(0.998) TCGA-CJ-6030-01 6 32808790 32808790 T A PSMB8 Silent p.V259V 0.24 TCGA-CJ-6030-01 6 33163416 33163416 A G RXRB Missense_Mutation p.L396P 0.31 deleterious(0.05) probably_damaging(0.998) TCGA-CJ-6030-01 6 42796273 42796273 C T GLTSCR1L Missense_Mutation p.L68F 0.18 tolerated(0.13) probably_damaging(0.995) TCGA-CJ-6030-01 6 54214608 54214608 C T TINAG Missense_Mutation p.R332W 0.20 deleterious(0) probably_damaging(0.999) TCGA-CJ-6030-01 6 66112428 66112428 G A EYS Missense_Mutation p.S376L 0.09 tolerated(0.21) benign(0.012) TCGA-CJ-6030-01 6 7248780 7248780 C G RREB1 Missense_Mutation p.T1603S 0.17 tolerated(0.08) probably_damaging(0.964) TCGA-CJ-6030-01 6 87725418 87725418 G T HTR1E Missense_Mutation p.W122C 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-CJ-6030-01 7 127017261 127017276 GTGGGCAGTAGAATTT - ZNF800 Frame_Shift_Del p.K89Qfs*12 0.11 TCGA-CJ-6030-01 7 66420696 66420696 A C TMEM248 3'UTR 0.38 TCGA-CJ-6030-01 7 75168737 75168737 C A HIP1 Missense_Mutation p.E989D 0.23 deleterious(0) probably_damaging(0.954) TCGA-CJ-6030-01 7 90895797 90895797 G T FZD1 Missense_Mutation p.M534I 0.26 deleterious(0.04) possibly_damaging(0.679) TCGA-CJ-6030-01 8 26217736 26217736 G T PPP2R2A Missense_Mutation p.G143V 0.10 deleterious(0.04) possibly_damaging(0.684) TCGA-CJ-6030-01 8 91090640 91090640 C A CALB1 Missense_Mutation p.Q64H 0.06 tolerated(0.05) benign(0) TCGA-CJ-6030-01 9 114454520 114454520 A T C9orf84 Missense_Mutation p.V1182E 0.25 tolerated(0.06) possibly_damaging(0.732) TCGA-CJ-6030-01 9 133333803 133333803 G T ASS1 Missense_Mutation p.V64F 0.35 deleterious(0) possibly_damaging(0.588) TCGA-CJ-6030-01 9 136290647 136290647 A G ADAMTS13 Splice_Site p.X111_splice 0.31 TCGA-CJ-6030-01 9 23705049 23705049 A G ELAVL2 Silent p.S118S 0.29 TCGA-CJ-6030-01 9 35547730 35547730 A T RUSC2 Silent p.L404L 0.35 TCGA-CJ-6030-01 X 153196257 153196257 C T NAA10 Missense_Mutation p.A144T 0.33 deleterious(0.03) probably_damaging(0.918) TCGA-CJ-6030-01 Y 21903350 21903350 C T KDM5D Missense_Mutation p.E126K 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-CJ-6031-01 10 105953637 105953637 C T WDR96 Missense_Mutation p.V477M 0.25 deleterious(0) probably_damaging(0.927) TCGA-CJ-6031-01 10 123298145 123298145 A G FGFR2 Missense_Mutation p.Y237H 0.09 tolerated(0.15) benign(0.015) TCGA-CJ-6031-01 10 123298147 123298147 T G FGFR2 Missense_Mutation p.E236A 0.08 tolerated(0.17) benign(0.087) TCGA-CJ-6031-01 10 30900736 30900736 T - LYZL2 3'UTR 0.17 TCGA-CJ-6031-01 10 46121526 46121526 A G ZFAND4 Missense_Mutation p.L582S 0.16 tolerated(0.17) benign(0.04) TCGA-CJ-6031-01 10 75487058 75487058 G A RP11-464F9.1 RNA 0.14 TCGA-CJ-6031-01 11 116746997 116746997 A G SIK3 Missense_Mutation p.M298T 0.18 deleterious_low_confidence(0.01) benign(0.023) TCGA-CJ-6031-01 11 498772 498772 C A RNH1 Missense_Mutation p.R259M 0.13 deleterious(0) possibly_damaging(0.841) TCGA-CJ-6031-01 11 59369267 59369267 T - OSBP Frame_Shift_Del p.K289Nfs*62 0.19 TCGA-CJ-6031-01 11 64028903 64028903 A T PLCB3 Missense_Mutation p.E588V 0.16 deleterious(0) possibly_damaging(0.878) TCGA-CJ-6031-01 12 18435099 18435099 T G PIK3C2G Missense_Mutation p.N28K 0.24 tolerated_low_confidence(0.06) benign(0.169) TCGA-CJ-6031-01 12 40707829 40707829 A - LRRK2 Frame_Shift_Del p.I1533Sfs*15 0.14 TCGA-CJ-6031-01 12 51663039 51663041 AGG - SMAGP In_Frame_Del p.P8del 0.18 TCGA-CJ-6031-01 12 85267096 85267096 C - SLC6A15 Frame_Shift_Del p.M293Ifs*18 0.13 TCGA-CJ-6031-01 12 9344841 9344841 C T PZP Silent p.K498K 0.15 TCGA-CJ-6031-01 14 106237611 106237611 C T IGHG3 Missense_Mutation p.A45T 0.10 tolerated(0.19) benign(0.271) TCGA-CJ-6031-01 14 45432114 45432114 C T FAM179B Missense_Mutation p.R164W 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CJ-6031-01 14 74967715 74967715 C T LTBP2 Missense_Mutation p.D1780N 0.29 deleterious(0.05) benign(0.198) TCGA-CJ-6031-01 14 75513898 75513898 C A MLH3 Missense_Mutation p.A821S 0.12 tolerated(0.86) benign(0.002) TCGA-CJ-6031-01 14 91760563 91760563 T A CCDC88C Missense_Mutation p.N1356Y 0.03 deleterious(0) probably_damaging(0.968) TCGA-CJ-6031-01 15 43621613 43621613 C A LCMT2 Missense_Mutation p.G359C 0.15 deleterious(0) probably_damaging(0.999) TCGA-CJ-6031-01 16 30133218 30133218 G A MAPK3 Missense_Mutation p.R94C 0.14 deleterious(0.01) benign(0.093) TCGA-CJ-6031-01 16 46763011 46763011 T - MYLK3 Frame_Shift_Del p.Q566Rfs*5 0.14 TCGA-CJ-6031-01 16 66887326 66887326 G A CA7 Silent p.R240R 0.14 TCGA-CJ-6031-01 16 85701801 85701801 C T GSE1 Silent p.H1062H 0.17 TCGA-CJ-6031-01 17 40461539 40461539 C G STAT5A Intron 0.26 TCGA-CJ-6031-01 17 44590122 44590122 G A LRRC37A2 Missense_Mutation p.R15Q 0.12 tolerated(0.47) benign(0) TCGA-CJ-6031-01 19 39955501 39955501 T A SUPT5H Missense_Mutation p.Y230N 0.24 deleterious(0) probably_damaging(0.962) TCGA-CJ-6031-01 1 109238748 109238748 G T PRPF38B Missense_Mutation p.K143N 0.19 tolerated(0.05) probably_damaging(1) TCGA-CJ-6031-01 1 109238749 109238749 C T PRPF38B Nonsense_Mutation p.Q144* 0.18 TCGA-CJ-6031-01 1 110582061 110582061 A T STRIP1 Missense_Mutation p.M169L 0.28 tolerated(0.7) benign(0) TCGA-CJ-6031-01 1 154543879 154543879 C A CHRNB2 Missense_Mutation p.L194M 0.21 tolerated(0.5) benign(0.048) TCGA-CJ-6031-01 1 154988705 154988705 G T ZBTB7B Missense_Mutation p.K422N 0.05 deleterious(0) probably_damaging(0.985) TCGA-CJ-6031-01 1 16583146 16583146 T G FBXO42 Missense_Mutation p.E204A 0.15 tolerated(0.24) benign(0.031) TCGA-CJ-6031-01 1 169822055 169822055 G A C1orf112 Nonsense_Mutation p.W830* 0.18 TCGA-CJ-6031-01 1 200014591 200014591 C A NR5A2 Silent p.V114V 0.18 TCGA-CJ-6031-01 1 203652191 203652191 G T ATP2B4 5'UTR 0.21 TCGA-CJ-6031-01 1 24202092 24202092 C - CNR2 Frame_Shift_Del p.V6* 0.12 TCGA-CJ-6031-01 1 45965219 45965220 - T CCDC163P Frame_Shift_Ins p.N21Kfs*6 0.25 TCGA-CJ-6031-01 1 6208965 6208965 G T CHD5 Missense_Mutation p.N444K 0.16 deleterious(0.03) benign(0.403) TCGA-CJ-6031-01 1 66098923 66098923 T - LEPR Intron 0.09 TCGA-CJ-6031-01 20 19977343 19977343 G A RIN2 Missense_Mutation p.A790T 0.06 tolerated(0.97) possibly_damaging(0.66) TCGA-CJ-6031-01 20 30897808 30897808 G C KIF3B Silent p.T76T 0.19 TCGA-CJ-6031-01 21 43803192 43803192 G A TMPRSS3 Silent p.G244G 0.20 TCGA-CJ-6031-01 22 37769171 37769171 C A ELFN2 Nonsense_Mutation p.E802* 0.12 TCGA-CJ-6031-01 2 160667078 160667078 A G LY75-CD302 Missense_Mutation p.L1553S 0.12 deleterious(0.05) probably_damaging(0.934) TCGA-CJ-6031-01 2 171902831 171902831 C T TLK1 Missense_Mutation p.R341K 0.12 tolerated(0.16) probably_damaging(0.997) TCGA-CJ-6031-01 2 179499489 179499489 C T TTN Missense_Mutation p.A14038T 0.04 TCGA-CJ-6031-01 2 206640998 206640998 C T NRP2 Intron 0.20 TCGA-CJ-6031-01 2 240111615 240111615 G C HDAC4 Missense_Mutation p.Q85E 0.17 deleterious(0.01) benign(0.032) TCGA-CJ-6031-01 3 11389435 11389435 G T ATG7 Nonsense_Mutation p.E404* 0.22 TCGA-CJ-6031-01 3 121208173 121208173 T G POLQ Missense_Mutation p.E1202A 0.16 tolerated_low_confidence(0.14) benign(0.08) TCGA-CJ-6031-01 3 132419241 132419241 A - NPHP3 Frame_Shift_Del p.F560Lfs*14 0.16 TCGA-CJ-6031-01 3 141278763 141278763 A G RASA2 Silent p.L263L 0.13 TCGA-CJ-6031-01 3 186262113 186262113 C T CRYGS Translation_Start_Site p.M1? 0.11 tolerated(0.07) benign(0.002) TCGA-CJ-6031-01 3 19436689 19436689 G A KCNH8 Missense_Mutation p.V355I 0.19 tolerated(0.12) possibly_damaging(0.904) TCGA-CJ-6031-01 4 109667938 109667938 T C ETNPPL Silent p.E384E 0.18 TCGA-CJ-6031-01 4 138450943 138450943 C T PCDH18 Missense_Mutation p.G767D 0.13 deleterious(0.03) probably_damaging(0.992) TCGA-CJ-6031-01 4 159549854 159549854 G A RXFP1 Missense_Mutation p.D298N 0.16 tolerated(0.5) benign(0.158) TCGA-CJ-6031-01 4 2275855 2275855 C G ZFYVE28 Missense_Mutation p.E714Q 0.05 tolerated(0.13) benign(0.283) TCGA-CJ-6031-01 4 3133479 3133485 CTCTTGA - HTT Frame_Shift_Del p.L739Pfs*14 0.10 TCGA-CJ-6031-01 5 139189235 139189235 C - PSD2 Frame_Shift_Del p.L71Sfs*11 0.11 TCGA-CJ-6031-01 5 140594887 140594887 G T PCDHB13 Nonsense_Mutation p.E398* 0.25 TCGA-CJ-6031-01 5 176631295 176631295 T C NSD1 Splice_Site p.X412_splice 0.13 TCGA-CJ-6031-01 5 176729440 176729440 G A RAB24 Missense_Mutation p.R131C 0.25 deleterious(0.04) possibly_damaging(0.657) TCGA-CJ-6031-01 6 135520166 135520166 A - MYB Frame_Shift_Del p.T564Lfs*18 0.15 TCGA-CJ-6031-01 6 155743887 155743887 G A NOX3 Missense_Mutation p.L417F 0.17 deleterious(0.02) probably_damaging(0.911) TCGA-CJ-6031-01 6 82950105 82950105 A T IBTK Silent p.I33I 0.17 TCGA-CJ-6031-01 6 82950107 82950107 T C IBTK Missense_Mutation p.I33V 0.17 tolerated(0.12) benign(0.145) TCGA-CJ-6031-01 7 123517205 123517205 T C HYAL4 Missense_Mutation p.L481S 0.16 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-CJ-6031-01 7 123517206 123517206 G T HYAL4 Missense_Mutation p.L481F 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.726) TCGA-CJ-6031-01 7 27142221 27142221 C T HOXA2 5'UTR 0.31 TCGA-CJ-6031-01 7 95818964 95818965 - T SLC25A13 Frame_Shift_Ins p.K260Efs*11 0.12 TCGA-CJ-6031-01 7 99693535 99693535 G T MCM7 Missense_Mutation p.A486D 0.12 deleterious(0) probably_damaging(0.987) TCGA-CJ-6031-01 8 125035809 125035809 C T FER1L6 Silent p.C753C 0.08 TCGA-CJ-6031-01 8 145724303 145724303 G A PPP1R16A Missense_Mutation p.C112Y 0.17 deleterious(0) probably_damaging(1) TCGA-CJ-6031-01 8 28385020 28385020 T C FZD3 Missense_Mutation p.V248A 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-CJ-6031-01 8 38282176 38282176 C A FGFR1 Missense_Mutation p.A294S 0.20 deleterious(0.02) probably_damaging(0.969) TCGA-CJ-6031-01 9 20874780 20874780 C T FOCAD Missense_Mutation p.S764L 0.18 tolerated(0.52) benign(0.001) TCGA-CJ-6031-01 9 5897599 5897599 A G MLANA Silent p.L40L 0.15 TCGA-CJ-6031-01 9 5897600 5897600 C A MLANA Missense_Mutation p.L41M 0.15 deleterious(0) probably_damaging(0.999) TCGA-CJ-6031-01 X 12736252 12736253 - A FRMPD4 Frame_Shift_Ins p.S1105Kfs*31 0.22 TCGA-CJ-6031-01 X 146295022 146295022 C T MIR513A1 RNA 0.40 TCGA-CJ-6031-01 X 30254882 30254882 G C MAGEB3 Missense_Mutation p.A281P 0.30 deleterious(0) probably_damaging(0.997) TCGA-CJ-6032-01 11 119510667 119510667 G T RP11-196E1.3 RNA 0.08 TCGA-CJ-6032-01 11 2154084 2154084 G A IGF2 3'UTR 0.05 TCGA-CJ-6032-01 11 32953804 32953804 C T QSER1 Silent p.L205L 0.28 TCGA-CJ-6032-01 11 59949129 59949129 T C MS4A6A Silent p.A52A 0.28 TCGA-CJ-6032-01 11 89017963 89017964 - G TYR Frame_Shift_Ins p.H404Afs*18 0.25 TCGA-CJ-6032-01 12 120882569 120882569 C A TRIAP1 3'UTR 0.31 TCGA-CJ-6032-01 12 21991035 21991035 T A ABCC9 Silent p.G1181G 0.37 TCGA-CJ-6032-01 12 32786521 32786521 T G FGD4 Silent p.L600L 0.23 TCGA-CJ-6032-01 12 40041619 40041619 T A C12orf40 Missense_Mutation p.M137K 0.26 tolerated(0.13) benign(0.28) TCGA-CJ-6032-01 12 41422971 41422971 G A CNTN1 Missense_Mutation p.R977H 0.26 deleterious(0) probably_damaging(0.999) TCGA-CJ-6032-01 13 38357212 38357212 C T TRPC4 Missense_Mutation p.E87K 0.32 tolerated(0.07) possibly_damaging(0.897) TCGA-CJ-6032-01 14 105861116 105861116 A - PACS2 3'UTR 0.29 TCGA-CJ-6032-01 14 33243070 33243070 C T AKAP6 Missense_Mutation p.R1187C 0.16 deleterious(0) probably_damaging(0.997) TCGA-CJ-6032-01 14 35761756 35761756 T C PSMA6 Missense_Mutation p.V25A 0.28 deleterious(0) possibly_damaging(0.548) TCGA-CJ-6032-01 15 64380992 64380992 C A FAM96A Silent p.V61V 0.27 TCGA-CJ-6032-01 15 89731484 89731484 C G ABHD2 Missense_Mutation p.S292R 0.21 tolerated(0.07) benign(0.016) TCGA-CJ-6032-01 15 89744352 89744352 T A ABHD2 3'UTR 0.32 TCGA-CJ-6032-01 16 1260841 1260841 A T CACNA1H Missense_Mutation p.N1365Y 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-CJ-6032-01 17 1198811 1198811 C T TUSC5 Silent p.N138N 0.28 TCGA-CJ-6032-01 17 18111566 18111566 C T ALKBH5 Silent p.N347N 0.27 TCGA-CJ-6032-01 17 39191063 39191063 C G KRTAP1-3 Missense_Mutation p.C4S 0.16 deleterious(0) unknown(0) TCGA-CJ-6032-01 17 39988684 39988684 G C NT5C3B Missense_Mutation p.H92D 0.04 tolerated(0.71) benign(0.04) TCGA-CJ-6032-01 19 42907058 42907058 C T LIPE Missense_Mutation p.D890N 0.29 tolerated(0.06) benign(0.006) TCGA-CJ-6032-01 19 4792504 4792504 G A FEM1A Missense_Mutation p.G213D 0.07 deleterious(0.02) benign(0.349) TCGA-CJ-6032-01 19 51017905 51017905 C G ASPDH 5'Flank 0.42 TCGA-CJ-6032-01 19 52918551 52918551 A G ZNF528 Missense_Mutation p.E149G 0.34 deleterious(0.03) benign(0.03) TCGA-CJ-6032-01 1 117156509 117156509 T C IGSF3 Missense_Mutation p.Q237R 0.20 deleterious(0.01) benign(0.012) TCGA-CJ-6032-01 1 1250912 1250912 A C CPSF3L Silent p.S178S 0.28 TCGA-CJ-6032-01 1 145530386 145530386 C T ITGA10 Nonsense_Mutation p.Q201* 0.25 TCGA-CJ-6032-01 1 26799998 26799998 A - HMGN2 Frame_Shift_Del p.A15Qfs*3 0.25 TCGA-CJ-6032-01 1 27094308 27094308 G T ARID1A Nonsense_Mutation p.E1006* 0.24 TCGA-CJ-6032-01 1 31188992 31188992 C T MATN1 Missense_Mutation p.R324H 0.30 deleterious(0.02) probably_damaging(0.977) TCGA-CJ-6032-01 1 33820614 33820614 G T PHC2 Missense_Mutation p.P406Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-CJ-6032-01 1 35909816 35909816 G A KIAA0319L Missense_Mutation p.R868W 0.26 deleterious(0.04) possibly_damaging(0.614) TCGA-CJ-6032-01 1 40872508 40872508 T A SMAP2 Silent p.V68V 0.36 TCGA-CJ-6032-01 20 23377799 23377799 C G NAPB Missense_Mutation p.A69P 0.12 deleterious(0) probably_damaging(0.998) TCGA-CJ-6032-01 22 45724290 45724290 G A FAM118A Intron 0.40 TCGA-CJ-6032-01 2 21229236 21229236 C A APOB Missense_Mutation p.G3502C 0.44 probably_damaging(0.977) TCGA-CJ-6032-01 2 27908052 27908054 GTA TT SLC4A1AP Frame_Shift_Del p.S675Ifs*7 0.30 TCGA-CJ-6032-01 3 10188308 10188308 A T VHL Missense_Mutation p.I151F 0.40 deleterious(0) probably_damaging(0.994) TCGA-CJ-6032-01 3 10188309 10188309 T A VHL Missense_Mutation p.I151N 0.39 deleterious(0) probably_damaging(0.999) TCGA-CJ-6032-01 3 184001749 184001749 T A ECE2 Silent p.I449I 0.33 TCGA-CJ-6032-01 3 186276258 186276258 C A TBCCD1 Missense_Mutation p.R147I 0.27 deleterious(0.03) benign(0.24) TCGA-CJ-6032-01 4 100515934 100515934 T C MTTP Missense_Mutation p.M268T 0.20 tolerated(0.81) benign(0.065) TCGA-CJ-6032-01 4 89772247 89772248 - T FAM13A Frame_Shift_Ins p.R311Tfs*5 0.25 TCGA-CJ-6032-01 5 151166157 151166157 C T G3BP1 Intron 0.26 TCGA-CJ-6032-01 5 167645829 167645829 A T TENM2 Missense_Mutation p.M1645L 0.22 tolerated(0.51) benign(0) TCGA-CJ-6032-01 5 63256620 63256620 G T HTR1A Missense_Mutation p.S309R 0.26 tolerated(0.54) benign(0.023) TCGA-CJ-6032-01 6 168344080 168344080 A G MLLT4 Splice_Site p.X1049_splice 0.30 TCGA-CJ-6032-01 6 31541279 31541279 C G LTA Missense_Mutation p.P143A 0.23 deleterious(0.04) benign(0.029) TCGA-CJ-6032-01 6 33163381 33163381 C T RXRB Missense_Mutation p.A408T 0.28 deleterious(0.03) possibly_damaging(0.49) TCGA-CJ-6032-01 6 39267378 39267378 G A KCNK17 Missense_Mutation p.S275F 0.23 tolerated(0.06) possibly_damaging(0.646) TCGA-CJ-6032-01 6 43173114 43173114 G A CUL9 Missense_Mutation p.M1582I 0.26 deleterious(0.04) benign(0.065) TCGA-CJ-6032-01 7 121650583 121650583 G A PTPRZ1 Missense_Mutation p.V495I 0.05 tolerated(0.4) benign(0.002) TCGA-CJ-6032-01 7 77885771 77885771 C A MAGI2 Missense_Mutation p.L512F 0.30 deleterious(0) probably_damaging(0.998) TCGA-CJ-6032-01 8 124710771 124710781 AGCTCACTCTT - ANXA13 Frame_Shift_Del p.K110Efs*34 0.10 TCGA-CJ-6032-01 8 144943012 144943012 C T EPPK1 Nonsense_Mutation p.W1470* 0.35 TCGA-CJ-6032-01 9 125424692 125424692 G C OR1L1 Missense_Mutation p.G233A 0.27 deleterious(0.01) possibly_damaging(0.85) TCGA-CJ-6032-01 9 32571039 32571039 T C NDUFB6 Silent p.V64V 0.23 TCGA-CJ-6032-01 X 153524232 153524232 G C TKTL1 Missense_Mutation p.R7T 0.31 tolerated_low_confidence(0.26) unknown(0) TCGA-CJ-6032-01 X 21674907 21674907 G T KLHL34 Missense_Mutation p.Q334K 0.32 deleterious(0.04) benign(0.003) TCGA-CJ-6032-01 X 77528390 77528390 G T CYSLTR1 Missense_Mutation p.A285E 0.24 deleterious(0) probably_damaging(0.999) TCGA-CJ-6033-01 10 49459680 49459680 G C FRMPD2 Missense_Mutation p.A27G 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-CJ-6033-01 10 91066668 91066668 G T IFIT2 Missense_Mutation p.A319S 0.20 deleterious(0.01) possibly_damaging(0.863) TCGA-CJ-6033-01 11 117647629 117647629 G T DSCAML1 Silent p.R190R 0.23 TCGA-CJ-6033-01 11 5444324 5444324 C A OR51Q1 Missense_Mutation p.N298K 0.06 deleterious(0) benign(0.045) TCGA-CJ-6033-01 11 67017906 67017906 C T KDM2A Missense_Mutation p.T802M 0.20 deleterious(0) possibly_damaging(0.791) TCGA-CJ-6033-01 11 94169018 94169018 G A MRE11A Silent p.T658T 0.26 TCGA-CJ-6033-01 12 10467364 10467364 G A KLRD1 Missense_Mutation p.R171H 0.07 tolerated(0.56) benign(0.033) TCGA-CJ-6033-01 12 108960983 108960983 T C ISCU Silent p.T119T 0.13 TCGA-CJ-6033-01 12 81101888 81101888 G A MYF6 Silent p.K130K 0.06 TCGA-CJ-6033-01 12 81647354 81647354 C T ACSS3 Nonsense_Mutation p.R634* 0.13 TCGA-CJ-6033-01 14 33294008 33294008 C A AKAP6 3'UTR 0.30 TCGA-CJ-6033-01 14 62187224 62187224 C A HIF1A Missense_Mutation p.L78I 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-CJ-6033-01 14 70633462 70633462 C T SLC8A3 Missense_Mutation p.G560S 0.12 deleterious(0.01) probably_damaging(1) TCGA-CJ-6033-01 14 77733013 77733013 T A NGB Missense_Mutation p.T108S 0.21 deleterious(0.02) benign(0.274) TCGA-CJ-6033-01 15 34547536 34547536 A G SLC12A6 Missense_Mutation p.V268A 0.23 deleterious(0) probably_damaging(0.999) TCGA-CJ-6033-01 15 45408398 45408398 C T DUOXA2 Silent p.R94R 0.11 TCGA-CJ-6033-01 15 89760467 89760467 C T RLBP1 Missense_Mutation p.G77E 0.16 tolerated(0.12) possibly_damaging(0.891) TCGA-CJ-6033-01 16 18602495 18602495 C - ABCC6P1 RNA 0.24 TCGA-CJ-6033-01 16 19640036 19640036 C T C16orf62 Silent p.N576N 0.03 TCGA-CJ-6033-01 16 21061230 21061230 C - DNAH3 Splice_Site p.X1449_splice 0.17 TCGA-CJ-6033-01 16 21985233 21985247 CCAGTTACTCAGATT - UQCRC2 In_Frame_Del p.S329_S333del 0.11 TCGA-CJ-6033-01 16 28916205 28916205 T C RABEP2 3'UTR 0.36 TCGA-CJ-6033-01 17 18135884 18135884 C T LLGL1 Silent p.T85T 0.24 TCGA-CJ-6033-01 17 18220787 18220787 A C SMCR8 Missense_Mutation p.S562R 0.24 tolerated(0.15) benign(0.004) TCGA-CJ-6033-01 17 61559982 61559982 C T ACE Missense_Mutation p.A425V 0.22 deleterious(0) probably_damaging(0.96) TCGA-CJ-6033-01 17 66303656 66303656 G C ARSG Missense_Mutation p.V8L 0.16 tolerated_low_confidence(0.19) benign(0.048) TCGA-CJ-6033-01 18 23619298 23619298 T C SS18 Missense_Mutation p.M244V 0.29 tolerated_low_confidence(0.32) benign(0.124) TCGA-CJ-6033-01 18 43246951 43246952 TC A SLC14A2 Frame_Shift_Del p.S537Tfs*28 0.29 TCGA-CJ-6033-01 18 50994332 50994332 C A DCC Missense_Mutation p.P1230T 0.14 tolerated(0.87) benign(0.001) TCGA-CJ-6033-01 19 38027920 38027920 G A ZNF793 Silent p.G120G 0.09 TCGA-CJ-6033-01 19 42301589 42301589 G A CEACAM3 Missense_Mutation p.V45I 0.29 deleterious(0.01) probably_damaging(0.942) TCGA-CJ-6033-01 19 55176277 55176277 C T LILRB4 Missense_Mutation p.P228L 0.18 deleterious(0.02) benign(0.432) TCGA-CJ-6033-01 1 11918768 11918768 G A NPPB Silent p.S41S 0.35 TCGA-CJ-6033-01 1 1289294 1289294 T A MXRA8 Missense_Mutation p.I413F 0.07 deleterious(0) benign(0.231) TCGA-CJ-6033-01 1 147124277 147124277 A G ACP6 Silent p.L286L 0.19 TCGA-CJ-6033-01 1 150938559 150938559 A C CERS2 3'UTR 0.27 TCGA-CJ-6033-01 1 214818566 214818566 A T CENPF Missense_Mutation p.N1885Y 0.29 possibly_damaging(0.563) TCGA-CJ-6033-01 1 230839961 230839961 T C AGT Missense_Mutation p.N416S 0.30 deleterious(0.04) benign(0.009) TCGA-CJ-6033-01 1 28661233 28661233 C G MED18 Missense_Mutation p.H127D 0.26 tolerated(0.1) possibly_damaging(0.824) TCGA-CJ-6033-01 1 29069170 29069170 G A YTHDF2 Missense_Mutation p.D130N 0.16 tolerated(0.07) benign(0.15) TCGA-CJ-6033-01 1 39715714 39715714 A G MACF1 Missense_Mutation p.E104G 0.11 possibly_damaging(0.76) TCGA-CJ-6033-01 1 76269428 76269428 G T MSH4 Missense_Mutation p.G86V 0.13 tolerated_low_confidence(0.33) benign(0.063) TCGA-CJ-6033-01 1 86289366 86289366 A G COL24A1 Splice_Site p.X1245_splice 0.12 TCGA-CJ-6033-01 20 30418677 30418677 T G MYLK2 Missense_Mutation p.F427C 0.26 deleterious(0) probably_damaging(1) TCGA-CJ-6033-01 22 36123236 36123236 C G APOL5 Missense_Mutation p.P374R 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.804) TCGA-CJ-6033-01 2 155295210 155295210 G C GALNT13 Missense_Mutation p.G501A 0.23 deleterious(0.03) possibly_damaging(0.574) TCGA-CJ-6033-01 2 168101553 168101553 G C XIRP2 Missense_Mutation p.E1217D 0.12 probably_damaging(0.934) TCGA-CJ-6033-01 2 203378491 203378491 A G BMPR2 Silent p.A156A 0.06 TCGA-CJ-6033-01 2 234429716 234429716 A C USP40 Missense_Mutation p.I760S 0.16 tolerated(0.76) benign(0.005) TCGA-CJ-6033-01 2 235950115 235950115 G A SH3BP4 Silent p.R234R 0.12 TCGA-CJ-6033-01 2 37088370 37088370 C T STRN Missense_Mutation p.S525N 0.24 tolerated(0.09) benign(0.126) TCGA-CJ-6033-01 3 10188290 10188290 C T VHL Nonsense_Mutation p.Q145* 0.31 TCGA-CJ-6033-01 3 123376191 123376191 T A MYLK Missense_Mutation p.Y1357F 0.09 tolerated(0.09) benign(0.156) TCGA-CJ-6033-01 3 129276046 129276046 G T PLXND1 Silent p.L1822L 0.28 TCGA-CJ-6033-01 3 145799589 145799589 A T PLOD2 Missense_Mutation p.L432M 0.19 deleterious(0.01) benign(0.181) TCGA-CJ-6033-01 3 157031465 157031465 C T VEPH1 Missense_Mutation p.G652E 0.18 tolerated(0.72) benign(0.001) TCGA-CJ-6033-01 3 172060897 172060897 T G FNDC3B Missense_Mutation p.L690V 0.45 deleterious(0.03) possibly_damaging(0.781) TCGA-CJ-6033-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.14 deleterious(0.02) probably_damaging(0.959) TCGA-CJ-6033-01 3 36899166 36899166 C T TRANK1 Missense_Mutation p.G639S 0.24 tolerated(0.23) benign(0.01) TCGA-CJ-6033-01 3 52610715 52610715 C G PBRM1 Splice_Site p.X1153_splice 0.38 TCGA-CJ-6033-01 4 155719349 155719349 A G RBM46 Missense_Mutation p.K180E 0.27 deleterious(0) possibly_damaging(0.859) TCGA-CJ-6033-01 4 187538911 187538911 C A FAT1 Silent p.T2943T 0.11 TCGA-CJ-6033-01 4 8588871 8588871 G A GPR78 Silent p.P291P 0.29 TCGA-CJ-6033-01 5 129520719 129520719 C G CHSY3 Missense_Mutation p.I628M 0.36 tolerated(0.14) benign(0.03) TCGA-CJ-6033-01 5 149932854 149932854 T C NDST1 Missense_Mutation p.L870P 0.13 deleterious(0.04) benign(0.146) TCGA-CJ-6033-01 5 32000300 32000300 G A PDZD2 Missense_Mutation p.V393I 0.19 tolerated(0.05) benign(0.015) TCGA-CJ-6033-01 5 43615986 43615986 C T NNT Missense_Mutation p.H140Y 0.25 deleterious(0.04) possibly_damaging(0.458) TCGA-CJ-6033-01 5 50685733 50685733 G A ISL1 Silent p.K244K 0.21 TCGA-CJ-6033-01 6 146720724 146720724 T G GRM1 Missense_Mutation p.F850C 0.07 deleterious(0) probably_damaging(0.996) TCGA-CJ-6033-01 6 21595027 21595027 G A SOX4 Missense_Mutation p.E88K 0.31 deleterious(0) probably_damaging(0.999) TCGA-CJ-6033-01 6 31828358 31828358 C T NEU1 Missense_Mutation p.G219D 0.20 deleterious(0) probably_damaging(0.999) TCGA-CJ-6033-01 7 100304462 100304462 A C POP7 Missense_Mutation p.E3D 0.26 tolerated_low_confidence(0.15) benign(0.001) TCGA-CJ-6033-01 7 107556003 107556003 G C DLD Missense_Mutation p.G246A 0.13 deleterious(0.01) benign(0.139) TCGA-CJ-6033-01 7 134889161 134889161 A G WDR91 Silent p.N250N 0.24 TCGA-CJ-6033-01 7 92734661 92734661 G A SAMD9 Silent p.I250I 0.10 TCGA-CJ-6033-01 8 118147534 118147534 C T SLC30A8 5'Flank 0.29 TCGA-CJ-6033-01 8 141712777 141712777 G T PTK2 Silent p.I753I 0.16 TCGA-CJ-6033-01 8 144941623 144941623 C A EPPK1 Silent p.A1933A 0.19 TCGA-CJ-6033-01 8 67546928 67546928 T C VCPIP1 Silent p.E1159E 0.23 TCGA-CJ-6033-01 8 90937536 90937536 A G OSGIN2 Missense_Mutation p.K476E 0.19 tolerated(0.19) benign(0.003) TCGA-CJ-6033-01 9 114411754 114411754 T C DNAJC25 Missense_Mutation p.Y171H 0.48 deleterious(0) probably_damaging(0.998) TCGA-CJ-6033-01 9 115759684 115759684 T G ZNF883 RNA 0.32 TCGA-CJ-6033-01 9 21239700 21239700 C A IFNA14 Missense_Mutation p.V79F 0.22 deleterious(0.03) possibly_damaging(0.492) TCGA-CJ-6033-01 9 34649524 34649524 T C GALT Missense_Mutation p.M341T 0.11 deleterious(0) probably_damaging(0.969) TCGA-CJ-6033-01 9 5763502 5763502 G A KIAA1432 Silent p.Q825Q 0.11 TCGA-CJ-6033-01 9 96859671 96859671 C T PTPDC1 Missense_Mutation p.R273W 0.15 deleterious(0) probably_damaging(1) TCGA-CJ-6033-01 X 102968576 102968576 C T TMEM31 Nonsense_Mutation p.R53* 0.13 TCGA-CJ-6033-01 X 117700143 117700143 A T DOCK11 Missense_Mutation p.Q290L 0.29 tolerated(0.4) benign(0.001) TCGA-CJ-6033-01 X 117819736 117819736 G A DOCK11 Missense_Mutation p.R2063Q 0.28 tolerated_low_confidence(0.62) benign(0.011) TCGA-CJ-6033-01 X 135047254 135047254 A T MMGT1 Missense_Mutation p.S109T 0.11 tolerated(0.16) benign(0.079) TCGA-CJ-6033-01 X 44703517 44703517 C T DUSP21 Missense_Mutation p.R47C 0.21 tolerated(0.1) benign(0.052) TCGA-CJ-6033-01 X 57020876 57020876 C G SPIN3 Missense_Mutation p.D169H 0.14 deleterious(0) probably_damaging(0.985) TCGA-CJ-6033-01 X 73961521 73961521 T A KIAA2022 Missense_Mutation p.Q957H 0.24 tolerated(0.14) benign(0.014) TCGA-CW-5580-01 10 135184121 135184121 C T ECHS1 Missense_Mutation p.E77K 0.22 deleterious(0) possibly_damaging(0.724) TCGA-CW-5580-01 10 52566613 52566613 G A A1CF Missense_Mutation p.P554L 0.20 deleterious_low_confidence(0.01) benign(0.096) TCGA-CW-5580-01 11 119059909 119059909 G C PDZD3 Missense_Mutation p.A495P 0.37 tolerated_low_confidence(0.22) benign(0.215) TCGA-CW-5580-01 11 1271392 1271392 G A MUC5B Missense_Mutation p.A4428T 0.34 benign(0.042) TCGA-CW-5580-01 11 64645859 64645859 C T EHD1 Silent p.R26R 0.28 TCGA-CW-5580-01 11 71927885 71927885 C T FOLR2 5'UTR 0.25 TCGA-CW-5580-01 12 102433684 102433684 C - CCDC53 Frame_Shift_Del p.D133Ifs*17 0.22 TCGA-CW-5580-01 12 104071251 104071251 C T STAB2 Silent p.G889G 0.30 TCGA-CW-5580-01 12 125438720 125438720 T C DHX37 Missense_Mutation p.S831G 0.31 tolerated(1) benign(0.006) TCGA-CW-5580-01 12 132636049 132636049 T C NOC4L Missense_Mutation p.V365A 0.27 tolerated(0.12) possibly_damaging(0.702) TCGA-CW-5580-01 12 27824429 27824429 T C PPFIBP1 Silent p.T421T 0.42 TCGA-CW-5580-01 12 31540603 31540603 A - DENND5B Frame_Shift_Del p.L1254Cfs*9 0.23 TCGA-CW-5580-01 12 54676441 54676446 GTGGTC - HNRNPA1 In_Frame_Del 0.24 TCGA-CW-5580-01 12 99007278 99007278 A T IKBIP 3'UTR 0.10 TCGA-CW-5580-01 13 103528030 103528030 T C ERCC5 Missense_Mutation p.V1113A 0.27 tolerated(0.85) benign(0.004) TCGA-CW-5580-01 13 25899186 25899186 T G NUPL1 Missense_Mutation p.H337Q 0.25 deleterious(0.01) benign(0.397) TCGA-CW-5580-01 14 23549554 23549554 G T ACIN1 Silent p.S388S 0.08 TCGA-CW-5580-01 14 53385912 53385912 T - FERMT2 Frame_Shift_Del p.K107Sfs*3 0.10 TCGA-CW-5580-01 14 60600702 60600703 GA - PCNXL4 Frame_Shift_Del p.R861Sfs*3 0.32 TCGA-CW-5580-01 14 68151823 68151823 A G RDH11 Missense_Mutation p.F255L 0.36 tolerated(0.95) benign(0.003) TCGA-CW-5580-01 14 75248501 75248501 A T YLPM1 Silent p.A585A 0.30 TCGA-CW-5580-01 14 92499570 92499570 T G TRIP11 Missense_Mutation p.E56A 0.18 deleterious(0) possibly_damaging(0.631) TCGA-CW-5580-01 15 25959134 25959134 C T ATP10A Nonsense_Mutation p.W677* 0.13 TCGA-CW-5580-01 15 43621597 43621597 A G LCMT2 Missense_Mutation p.F364S 0.10 tolerated(0.16) benign(0.001) TCGA-CW-5580-01 15 49293222 49293222 G T SECISBP2L Missense_Mutation p.F700L 0.31 deleterious(0.03) probably_damaging(0.995) TCGA-CW-5580-01 15 91449980 91449980 C A MAN2A2 Silent p.P282P 0.17 TCGA-CW-5580-01 16 10524764 10524764 T G ATF7IP2 Missense_Mutation p.I96R 0.40 deleterious(0) possibly_damaging(0.748) TCGA-CW-5580-01 16 1570643 1570643 A T IFT140 Missense_Mutation p.L1207Q 0.36 deleterious(0) probably_damaging(0.98) TCGA-CW-5580-01 16 31374291 31374291 G A ITGAX Silent p.V465V 0.07 TCGA-CW-5580-01 16 49407979 49407979 G A C16orf78 Silent p.G43G 0.09 TCGA-CW-5580-01 17 11701032 11701032 T C DNAH9 Missense_Mutation p.L2781P 0.35 probably_damaging(0.967) TCGA-CW-5580-01 17 11835416 11835416 G A DNAH9 Missense_Mutation p.R4064K 0.27 probably_damaging(1) TCGA-CW-5580-01 17 3195481 3195481 G A OR3A1 Silent p.P132P 0.24 TCGA-CW-5580-01 17 3301113 3301113 C - OR1E1 Frame_Shift_Del p.V198* 0.16 TCGA-CW-5580-01 17 36091725 36091725 G C HNF1B Missense_Mutation p.N302K 0.34 deleterious(0) probably_damaging(0.93) TCGA-CW-5580-01 17 3629541 3629541 A G GSG2 Missense_Mutation p.K771R 0.32 tolerated(0.31) benign(0.004) TCGA-CW-5580-01 17 37026398 37026398 A T LASP1 5'UTR 0.25 TCGA-CW-5580-01 17 58234007 58234007 C T CA4 Silent p.L67L 0.29 TCGA-CW-5580-01 17 7125374 7125374 C T ACADVL Silent p.T265T 0.29 TCGA-CW-5580-01 17 73736440 73736440 G A ITGB4 Silent p.V816V 0.31 TCGA-CW-5580-01 18 43492338 43492338 G A EPG5 Silent p.V1300V 0.32 TCGA-CW-5580-01 18 5406847 5406847 A T EPB41L3 Missense_Mutation p.S760T 0.34 tolerated(0.14) probably_damaging(0.999) TCGA-CW-5580-01 18 61449744 61449744 T C SERPINB7 Silent p.A46A 0.04 TCGA-CW-5580-01 19 14938974 14938974 A G OR7A5 Missense_Mutation p.L27P 0.38 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-CW-5580-01 19 49897747 49897747 C T CCDC155 Missense_Mutation p.R20W 0.11 deleterious(0) benign(0.008) TCGA-CW-5580-01 19 54760026 54760026 G A LILRB5 Silent p.L179L 0.37 TCGA-CW-5580-01 19 55451068 55451068 C T NLRP7 Silent p.L373L 0.07 TCGA-CW-5580-01 19 58005254 58005254 G A ZNF419 Missense_Mutation p.M444I 0.23 tolerated(0.87) benign(0.002) TCGA-CW-5580-01 19 58601733 58601733 G T ZSCAN18 Missense_Mutation p.P24T 0.30 tolerated_low_confidence(0.22) benign(0.022) TCGA-CW-5580-01 1 11169375 11169375 A C MTOR Missense_Mutation p.I2500M 0.22 deleterious(0) probably_damaging(0.966) TCGA-CW-5580-01 1 113098583 113098583 C T ST7L Missense_Mutation p.D435N 0.30 deleterious(0) probably_damaging(1) TCGA-CW-5580-01 1 114948266 114948267 - T TRIM33 Frame_Shift_Ins p.M845Nfs*3 0.23 TCGA-CW-5580-01 1 156553240 156553240 C T TTC24 Nonsense_Mutation p.Q384* 0.36 TCGA-CW-5580-01 1 160310032 160310032 C A COPA Silent p.G31G 0.29 TCGA-CW-5580-01 1 178427409 178427409 A G RASAL2 Silent p.R994R 0.05 TCGA-CW-5580-01 1 202861658 202861658 T G KLHL12 3'UTR 0.11 TCGA-CW-5580-01 1 218504325 218504338 GATCCTACGTGATG - RRP15 Frame_Shift_Del p.I248Ffs*15 0.17 TCGA-CW-5580-01 1 33149611 33149611 C T SYNC Missense_Mutation p.G480R 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CW-5580-01 1 42880337 42880337 G A RIMKLA Missense_Mutation p.D290N 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-CW-5580-01 1 78195568 78195568 T C USP33 Missense_Mutation p.T263A 0.35 deleterious(0.03) benign(0.03) TCGA-CW-5580-01 20 34828159 34828159 G C AAR2 Silent p.G123G 0.24 TCGA-CW-5580-01 20 35842239 35842239 G T RPN2 Missense_Mutation p.D355Y 0.26 deleterious(0) probably_damaging(1) TCGA-CW-5580-01 20 54824370 54824370 C A MC3R Silent p.T157T 0.30 TCGA-CW-5580-01 2 122168512 122168512 G A CLASP1 Missense_Mutation p.P785L 0.30 tolerated(0.09) benign(0.066) TCGA-CW-5580-01 2 165952091 165952091 A G SCN3A Missense_Mutation p.F1454S 0.26 deleterious(0.01) benign(0.255) TCGA-CW-5580-01 2 179416718 179416718 G T TTN Missense_Mutation p.N30303K 0.09 TCGA-CW-5580-01 2 179606370 179606370 C A TTN Missense_Mutation p.A3864S 0.07 TCGA-CW-5580-01 2 207041953 207041953 T - GPR1 Frame_Shift_Del p.T7Hfs*13 0.20 TCGA-CW-5580-01 2 224462769 224462769 G T SCG2 Missense_Mutation p.S411Y 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-CW-5580-01 2 241496637 241496637 G A ANKMY1 5'UTR 0.10 TCGA-CW-5580-01 2 27702943 27702946 ATAA - IFT172 Frame_Shift_Del p.L286Tfs*42 0.26 TCGA-CW-5580-01 2 27876614 27876614 C G SUPT7L Missense_Mutation p.S328T 0.11 deleterious(0.01) benign(0.018) TCGA-CW-5580-01 2 31598321 31598321 G A XDH Silent p.C509C 0.36 TCGA-CW-5580-01 2 32143009 32143016 AGCTGTAT TCC MEMO1 Frame_Shift_Del p.Y139Wfs*8 0.30 TCGA-CW-5580-01 2 67637078 67637096 GAAATTCAGAGAAAAAGAC - ETAA1 Frame_Shift_Del p.E897Kfs*16 0.25 TCGA-CW-5580-01 2 9580730 9580730 G A CPSF3 Missense_Mutation p.D291N 0.27 tolerated(0.05) possibly_damaging(0.457) TCGA-CW-5580-01 3 10188245 10188245 G T VHL Missense_Mutation p.V130F 0.48 deleterious(0) probably_damaging(0.991) TCGA-CW-5580-01 3 128204803 128204803 T A GATA2 Missense_Mutation p.Y213F 0.30 tolerated(0.11) probably_damaging(0.931) TCGA-CW-5580-01 3 129286540 129286540 C T PLXND1 Splice_Site p.X1325_splice 0.40 TCGA-CW-5580-01 3 154146980 154146980 G T GPR149 Missense_Mutation p.T142K 0.33 tolerated(0.33) benign(0.04) TCGA-CW-5580-01 3 170198277 170198277 G A SLC7A14 Silent p.I598I 0.36 TCGA-CW-5580-01 3 184070571 184070571 A G CLCN2 Missense_Mutation p.L724P 0.13 tolerated(0.1) possibly_damaging(0.61) TCGA-CW-5580-01 3 195538680 195538680 C T MUC4 Silent p.G3G 0.32 TCGA-CW-5580-01 3 197557694 197557694 A G LRCH3 Missense_Mutation p.N314S 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-CW-5580-01 3 25215897 25215897 C A AC133680.1 3'Flank 0.39 TCGA-CW-5580-01 3 47162024 47162024 G A SETD2 Nonsense_Mutation p.Q1368* 0.16 TCGA-CW-5580-01 3 52443747 52443747 A G BAP1 Missense_Mutation p.L17P 0.16 deleterious(0) probably_damaging(1) TCGA-CW-5580-01 3 52588748 52588748 G - PBRM1 Frame_Shift_Del p.P1427Hfs*5 0.36 TCGA-CW-5580-01 4 47944154 47944154 T A CNGA1 Missense_Mutation p.E223V 0.26 deleterious(0.02) possibly_damaging(0.876) TCGA-CW-5580-01 5 118560454 118560454 T C DMXL1 Silent p.T2755T 0.31 TCGA-CW-5580-01 5 153149881 153149881 A T GRIA1 Missense_Mutation p.I736F 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-CW-5580-01 5 167927655 167927655 A T RARS Silent p.V294V 0.25 TCGA-CW-5580-01 5 178293302 178293302 C T ZNF354B Silent p.L31L 0.30 TCGA-CW-5580-01 5 78264880 78264880 T A ARSB Missense_Mutation p.M150L 0.04 tolerated(0.1) benign(0.188) TCGA-CW-5580-01 6 102503283 102503283 A G GRIK2 Missense_Mutation p.K797R 0.24 tolerated(0.16) benign(0.096) TCGA-CW-5580-01 6 38903367 38903367 G A DNAH8 Splice_Site p.X3603_splice 0.04 TCGA-CW-5580-01 6 43020004 43020004 A C CUL7 Missense_Mutation p.Y227D 0.27 tolerated(0.28) benign(0.017) TCGA-CW-5580-01 6 8422803 8422803 C G SLC35B3 Silent p.G158G 0.08 TCGA-CW-5580-01 7 100486204 100486204 T C SRRT 3'UTR 0.40 TCGA-CW-5580-01 7 142568355 142568355 A T EPHB6 Silent p.S958S 0.04 TCGA-CW-5580-01 7 150697631 150697631 C T NOS3 Silent p.L393L 0.09 TCGA-CW-5580-01 7 150730799 150730799 C A ABCB8 Missense_Mutation p.P68H 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-CW-5580-01 7 151684336 151684336 G A GALNTL5 Missense_Mutation p.A210T 0.19 deleterious(0) possibly_damaging(0.742) TCGA-CW-5580-01 7 2404084 2404084 A G EIF3B Silent p.L359L 0.24 TCGA-CW-5580-01 7 64167976 64167976 A - ZNF107 Frame_Shift_Del p.I433Ffs*84 0.25 TCGA-CW-5580-01 7 71177037 71177037 G A WBSCR17 Missense_Mutation p.C568Y 0.31 deleterious(0) probably_damaging(0.995) TCGA-CW-5580-01 7 71177038 71177038 C T WBSCR17 Silent p.C568C 0.31 TCGA-CW-5580-01 7 99370311 99370315 AGCTG TTT CYP3A4 Splice_Site p.X73_splice 0.18 TCGA-CW-5580-01 8 17125809 17125809 T G VPS37A Missense_Mutation p.S81R 0.11 tolerated(0.4) probably_damaging(0.937) TCGA-CW-5580-01 9 104341505 104341505 C T GRIN3A Silent p.K968K 0.11 TCGA-CW-5580-01 9 113704047 113704047 C T LPAR1 Silent p.T149T 0.06 TCGA-CW-5580-01 9 123900914 123900914 A T CNTRL Missense_Mutation p.E765V 0.12 possibly_damaging(0.501) TCGA-CW-5580-01 9 132394938 132394938 G C NTMT1 5'UTR 0.39 TCGA-CW-5580-01 9 140449823 140449823 C - DPH7 Frame_Shift_Del p.W409Cfs*14 0.13 TCGA-CW-5580-01 9 72338543 72338543 G A PTAR1 Missense_Mutation p.L216F 0.36 tolerated(0.15) benign(0.027) TCGA-CW-5580-01 X 10085338 10085338 C T WWC3 Silent p.F413F 0.11 TCGA-CW-5580-01 X 11139773 11139773 G A HCCS Missense_Mutation p.R217H 0.26 deleterious(0) probably_damaging(0.998) TCGA-CW-5580-01 X 122561806 122561806 G A GRIA3 Missense_Mutation p.R631H 0.07 deleterious(0) probably_damaging(1) TCGA-CW-5580-01 X 123556363 123556363 G - TENM1 Frame_Shift_Del p.I1411Ffs*16 0.24 TCGA-CW-5580-01 X 125686496 125686496 G A DCAF12L1 Silent p.D32D 0.19 TCGA-CW-5580-01 X 19389075 19389075 A C MAP3K15 Splice_Site p.X1134_splice 0.24 TCGA-CW-5580-01 X 23019821 23019821 C T DDX53 Silent p.D549D 0.16 TCGA-CW-5580-01 X 23411568 23411568 T C PTCHD1 Missense_Mutation p.S645P 0.06 deleterious(0) probably_damaging(0.999) TCGA-CW-5580-01 X 63412535 63412535 G A AMER1 Missense_Mutation p.A211V 0.22 tolerated(0.16) benign(0.006) TCGA-CW-5580-01 X 71350488 71350488 A T RGAG4 Silent p.I301I 0.07 TCGA-CW-5581-01 10 103907139 103907139 A C PPRC1 Silent p.R1464R 0.32 TCGA-CW-5581-01 10 104596868 104596868 T A CYP17A1 Missense_Mutation p.E84V 0.19 deleterious(0) probably_damaging(1) TCGA-CW-5581-01 10 15175143 15175143 G A NMT2 Missense_Mutation p.L171F 0.04 deleterious(0) probably_damaging(0.985) TCGA-CW-5581-01 10 63958010 63958010 T G RTKN2 Missense_Mutation p.D496A 0.25 tolerated(0.08) possibly_damaging(0.548) TCGA-CW-5581-01 10 64968907 64968907 G C JMJD1C Missense_Mutation p.S928C 0.23 deleterious(0) probably_damaging(0.971) TCGA-CW-5581-01 10 73050863 73050863 C T UNC5B Missense_Mutation p.P431S 0.21 tolerated(0.32) benign(0.003) TCGA-CW-5581-01 10 90762874 90762874 C T FAS Missense_Mutation p.T40I 0.24 deleterious(0.05) benign(0.001) TCGA-CW-5581-01 11 44639740 44639740 A G CD82 Missense_Mutation p.Y156C 0.14 tolerated(0.13) possibly_damaging(0.84) TCGA-CW-5581-01 11 55579578 55579578 G T OR5L1 Missense_Mutation p.M212I 0.24 tolerated(0.26) benign(0.001) TCGA-CW-5581-01 11 56432011 56432011 A T OR5AR1 Missense_Mutation p.M284L 0.29 deleterious(0.01) possibly_damaging(0.869) TCGA-CW-5581-01 11 68315579 68315579 T A PPP6R3 Silent p.I153I 0.24 TCGA-CW-5581-01 11 93436013 93436013 G A KIAA1731 Missense_Mutation p.D1842N 0.17 tolerated(0.06) probably_damaging(1) TCGA-CW-5581-01 12 11061401 11061401 T - TAS2R13 Frame_Shift_Del p.N166Ifs*4 0.23 TCGA-CW-5581-01 12 123238330 123238330 C G DENR Missense_Mutation p.P28A 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-CW-5581-01 12 49935453 49935453 G - KCNH3 Frame_Shift_Del p.N118Mfs*10 0.22 TCGA-CW-5581-01 12 62902396 62902396 G T MON2 Intron 0.18 TCGA-CW-5581-01 13 86369560 86369560 G T SLITRK6 Missense_Mutation p.P362T 0.26 deleterious(0) possibly_damaging(0.835) TCGA-CW-5581-01 14 21058759 21058759 G T RNASE12 Missense_Mutation p.P42T 0.03 tolerated(0.96) benign(0.21) TCGA-CW-5581-01 14 42356893 42356893 T A LRFN5 Missense_Mutation p.F355L 0.08 deleterious(0) probably_damaging(0.934) TCGA-CW-5581-01 14 86089421 86089421 C T FLRT2 Silent p.N521N 0.19 TCGA-CW-5581-01 15 20193216 20193216 G T IGHV3OR15-7 Missense_Mutation p.Q18K 0.26 deleterious_low_confidence(0.01) benign(0.009) TCGA-CW-5581-01 15 35236588 35236588 T G AQR Missense_Mutation p.K124N 0.22 tolerated(0.15) benign(0.011) TCGA-CW-5581-01 15 49089548 49089548 G T CEP152 Missense_Mutation p.Q164K 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-CW-5581-01 16 20489924 20489925 - C ACSM2A Frame_Shift_Ins p.G405Rfs*48 0.32 TCGA-CW-5581-01 16 24920266 24920266 T A SLC5A11 Missense_Mutation p.I500N 0.19 tolerated(0.06) possibly_damaging(0.677) TCGA-CW-5581-01 16 24920271 24920271 G C SLC5A11 Missense_Mutation p.V502L 0.20 tolerated(0.32) benign(0.004) TCGA-CW-5581-01 16 67968459 67968459 C T PSMB10 3'UTR 0.19 TCGA-CW-5581-01 16 68265514 68265514 C A ESRP2 Silent p.G461G 0.05 TCGA-CW-5581-01 16 75690596 75690596 C G TERF2IP 3'UTR 0.21 TCGA-CW-5581-01 16 81954855 81954855 G A PLCG2 Missense_Mutation p.S763N 0.17 tolerated(1) benign(0.001) TCGA-CW-5581-01 17 36523827 36523827 A G SOCS7 Silent p.P418P 0.25 TCGA-CW-5581-01 17 38610249 38610249 C T IGFBP4 Missense_Mutation p.H193Y 0.26 tolerated(0.08) probably_damaging(0.954) TCGA-CW-5581-01 17 41960604 41960604 C G MPP2 Missense_Mutation p.E90D 0.22 deleterious(0.04) benign(0.032) TCGA-CW-5581-01 17 56620394 56620394 A T C17orf47 Missense_Mutation p.M385K 0.23 tolerated(0.95) benign(0.402) TCGA-CW-5581-01 18 25532271 25532271 A T CDH2 Nonsense_Mutation p.L856* 0.25 TCGA-CW-5581-01 19 12574850 12574850 C T ZNF709 Missense_Mutation p.R629H 0.25 tolerated(0.05) benign(0.143) TCGA-CW-5581-01 19 2853267 2853267 G A ZNF555 Missense_Mutation p.G402R 0.22 deleterious(0) probably_damaging(1) TCGA-CW-5581-01 19 33333132 33333132 G A SLC7A9 Missense_Mutation p.T389M 0.04 deleterious(0) probably_damaging(0.973) TCGA-CW-5581-01 1 155172612 155172612 G T THBS3 Missense_Mutation p.D316E 0.20 deleterious(0) probably_damaging(0.999) TCGA-CW-5581-01 1 155172613 155172613 T A THBS3 Missense_Mutation p.D316V 0.20 deleterious(0) probably_damaging(1) TCGA-CW-5581-01 1 197159958 197159959 AA - ZBTB41 Frame_Shift_Del p.F444Sfs*3 0.16 TCGA-CW-5581-01 1 201384351 201384351 A G TNNI1 Missense_Mutation p.L16P 0.19 tolerated(0.18) probably_damaging(0.992) TCGA-CW-5581-01 1 227921679 227921679 C T JMJD4 Nonsense_Mutation p.W207* 0.25 TCGA-CW-5581-01 1 34189862 34189862 C A CSMD2 Missense_Mutation p.G939V 0.24 deleterious(0) probably_damaging(1) TCGA-CW-5581-01 21 43697053 43697068 ATGGTAAGTGGGTTGT - ABCG1 Splice_Site p.X196_splice 0.12 TCGA-CW-5581-01 21 47588274 47588274 C T SPATC1L Silent p.S164S 0.29 TCGA-CW-5581-01 2 11919652 11919652 G A LPIN1 Missense_Mutation p.G329S 0.23 tolerated(0.29) benign(0.004) TCGA-CW-5581-01 2 29073074 29073074 T C TRMT61B Silent p.Q475Q 0.27 TCGA-CW-5581-01 2 33622348 33622348 C G LTBP1 Silent p.V1661V 0.28 TCGA-CW-5581-01 2 61450407 61450407 G T USP34 Missense_Mutation p.D2540E 0.25 deleterious(0) possibly_damaging(0.826) TCGA-CW-5581-01 2 86292646 86292646 A T POLR1A Intron 0.22 TCGA-CW-5581-01 2 99901199 99901199 C A LYG1 Nonsense_Mutation p.E140* 0.20 TCGA-CW-5581-01 3 105400639 105400640 AT C CBLB Frame_Shift_Del p.M742Gfs*2 0.20 TCGA-CW-5581-01 3 113528254 113528254 T - ATP6V1A Frame_Shift_Del p.F612Sfs*62 0.23 TCGA-CW-5581-01 3 195512921 195512921 T C MUC4 Missense_Mutation p.T1844A 0.27 unknown(0) TCGA-CW-5581-01 3 32804524 32804524 C A CNOT10 Intron 0.10 TCGA-CW-5581-01 3 97198177 97198177 G C EPHA6 Missense_Mutation p.E681D 0.18 tolerated(0.21) benign(0.013) TCGA-CW-5581-01 5 112902905 112902905 G T YTHDC2 Missense_Mutation p.D987Y 0.20 deleterious(0) probably_damaging(0.971) TCGA-CW-5581-01 5 130825242 130825242 A C RAPGEF6 Missense_Mutation p.F613V 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-CW-5581-01 5 141242928 141242928 T A PCDH1 Nonsense_Mutation p.K990* 0.17 TCGA-CW-5581-01 5 177576774 177576774 C G NHP2 Missense_Mutation p.E134D 0.22 tolerated(1) benign(0) TCGA-CW-5581-01 5 205842 205847 TTCTTT - CCDC127 In_Frame_Del p.K117_K118del 0.21 TCGA-CW-5581-01 6 11105212 11105212 C A ERVFRD-1 Missense_Mutation p.G111V 0.27 deleterious(0) probably_damaging(0.998) TCGA-CW-5581-01 6 143081503 143081503 A G HIVEP2 Silent p.T1974T 0.28 TCGA-CW-5581-01 6 16146960 16146960 T C MYLIP Missense_Mutation p.L439P 0.26 deleterious(0) probably_damaging(0.915) TCGA-CW-5581-01 6 167417367 167417367 A C FGFR1OP Intron 0.27 TCGA-CW-5581-01 6 24423464 24423464 A C MRS2 Intron 0.38 TCGA-CW-5581-01 6 24596226 24596226 C T KIAA0319 Missense_Mutation p.A226T 0.18 tolerated(0.5) benign(0.008) TCGA-CW-5581-01 7 141752123 141752123 C A MGAM Silent p.L945L 0.29 TCGA-CW-5581-01 9 93657907 93657907 G C SYK 3'UTR 0.29 TCGA-CW-5581-01 X 101857839 101857841 CTC - ARMCX5 In_Frame_Del p.P258del 0.49 TCGA-CW-5581-01 X 110494226 110494226 G T CAPN6 Nonsense_Mutation p.C359* 0.48 TCGA-CW-5581-01 X 19398325 19398325 G C MAP3K15 Missense_Mutation p.I834M 0.46 deleterious(0) probably_damaging(1) TCGA-CW-5581-01 X 41077688 41077688 C A USP9X Missense_Mutation p.N2091K 0.04 deleterious(0.04) benign(0.001) TCGA-CW-5583-01 10 118719667 118719667 C T KIAA1598 Missense_Mutation p.A83T 0.27 deleterious(0) probably_damaging(0.999) TCGA-CW-5583-01 12 62790158 62790158 G C USP15 Missense_Mutation p.G885A 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CW-5583-01 14 105418731 105418731 G - AHNAK2 Frame_Shift_Del p.L1020Wfs*13 0.32 TCGA-CW-5583-01 15 101606305 101606305 C T LRRK1 Missense_Mutation p.S1888F 0.09 deleterious(0.01) benign(0.27) TCGA-CW-5583-01 16 2152422 2152422 C T PKD1 Missense_Mutation p.S3054N 0.09 probably_damaging(0.995) TCGA-CW-5583-01 16 3726076 3726076 A G TRAP1 Missense_Mutation p.S259P 0.32 tolerated(0.35) benign(0.002) TCGA-CW-5583-01 16 68953056 68953056 C A TANGO6 Silent p.T687T 0.29 TCGA-CW-5583-01 17 15643627 15643627 C T TBC1D26 Intron 0.32 TCGA-CW-5583-01 18 21898718 21898721 ACCA - OSBPL1A Frame_Shift_Del p.G227Ifs*8 0.18 TCGA-CW-5583-01 18 44114298 44114298 G A LOXHD1 Silent p.D293D 0.03 TCGA-CW-5583-01 19 10428050 10428050 A - RAVER1 3'UTR 0.09 TCGA-CW-5583-01 19 11598181 11598181 G A ZNF653 Missense_Mutation p.T366I 0.32 deleterious(0.01) possibly_damaging(0.858) TCGA-CW-5583-01 19 15290202 15290202 G C NOTCH3 Missense_Mutation p.L1145V 0.18 tolerated(1) benign(0.264) TCGA-CW-5583-01 19 46185190 46185190 C T GIPR Silent p.C466C 0.08 TCGA-CW-5583-01 1 150724283 150724283 C G CTSS Missense_Mutation p.D201H 0.34 deleterious(0) probably_damaging(0.976) TCGA-CW-5583-01 1 158988366 158988366 G A IFI16 Silent p.K299K 0.33 TCGA-CW-5583-01 1 186643675 186643675 A C PTGS2 Missense_Mutation p.F542C 0.31 deleterious(0) probably_damaging(0.997) TCGA-CW-5583-01 1 223395438 223395438 A C SUSD4 3'UTR 0.26 TCGA-CW-5583-01 1 223983853 223983853 T A TP53BP2 Silent p.P796P 0.35 TCGA-CW-5583-01 1 38186483 38186483 C T EPHA10 Missense_Mutation p.S727N 0.10 deleterious(0.04) benign(0.008) TCGA-CW-5583-01 22 31328363 31328363 G C MORC2 Missense_Mutation p.L880V 0.32 deleterious(0) benign(0.399) TCGA-CW-5583-01 2 203420922 203420922 A T BMPR2 Missense_Mutation p.E845V 0.33 tolerated(0.14) benign(0.386) TCGA-CW-5583-01 2 203420924 203420924 A T BMPR2 Missense_Mutation p.M846L 0.33 tolerated(0.51) benign(0.001) TCGA-CW-5583-01 2 220159737 220159737 C T PTPRN Missense_Mutation p.G879S 0.39 deleterious(0.01) probably_damaging(1) TCGA-CW-5583-01 3 10191569 10191569 C - VHL Frame_Shift_Del p.L188Wfs*14 0.41 TCGA-CW-5583-01 4 101984510 101984510 T G PPP3CA Silent p.A320A 0.07 TCGA-CW-5583-01 4 165878425 165878426 TC - FAM218A Frame_Shift_Del p.S85Rfs*15 0.29 TCGA-CW-5583-01 5 14713005 14713005 G T ANKH Missense_Mutation p.A448E 0.09 tolerated(0.09) benign(0.077) TCGA-CW-5583-01 5 50685635 50685635 G C ISL1 Missense_Mutation p.E212Q 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-CW-5583-01 5 98115300 98115300 A T RGMB Silent p.P92P 0.33 TCGA-CW-5583-01 6 150174142 150174142 C A LRP11 Missense_Mutation p.M256I 0.28 deleterious(0.02) benign(0.391) TCGA-CW-5583-01 6 32134517 32134517 G A EGFL8 Silent p.E88E 0.38 TCGA-CW-5583-01 6 44084332 44084332 C T MRPL14 Missense_Mutation p.G6E 0.30 tolerated(0.34) benign(0.003) TCGA-CW-5583-01 7 156974262 156974262 A G UBE3C Missense_Mutation p.I223V 0.31 tolerated(0.47) benign(0.003) TCGA-CW-5583-01 7 94993300 94993300 C A PON3 Silent p.L190L 0.09 TCGA-CW-5583-01 9 133914603 133914603 C A LAMC3 Silent p.P417P 0.08 TCGA-CW-5583-01 X 132351243 132351243 T G TFDP3 Missense_Mutation p.N349H 0.20 deleterious(0.01) benign(0.432) TCGA-CW-5585-01 10 26994248 26994248 C A PDSS1 Missense_Mutation p.H87Q 0.32 tolerated(0.7) benign(0.001) TCGA-CW-5585-01 11 61624985 61624985 G A FADS2 Missense_Mutation p.V289I 0.31 tolerated(0.42) benign(0.016) TCGA-CW-5585-01 11 6652328 6652328 G T DCHS1 Missense_Mutation p.Q1296K 0.50 tolerated(0.34) benign(0.166) TCGA-CW-5585-01 11 76814080 76814080 C T OMP Silent p.F65F 0.12 TCGA-CW-5585-01 12 13140039 13140039 C G HEBP1 Intron 0.32 TCGA-CW-5585-01 12 57619419 57619419 G A NXPH4 Silent p.K272K 0.37 TCGA-CW-5585-01 12 6978057 6978057 A G TPI1 Missense_Mutation p.I86V 0.38 deleterious(0.03) benign(0.251) TCGA-CW-5585-01 12 88514013 88514013 T - CEP290 Frame_Shift_Del p.N467Ifs*8 0.28 TCGA-CW-5585-01 13 111125466 111125466 T A COL4A2 Silent p.L798L 0.25 TCGA-CW-5585-01 13 111953859 111953859 G A ARHGEF7 Missense_Mutation p.E600K 0.38 tolerated(0.13) possibly_damaging(0.847) TCGA-CW-5585-01 14 105414146 105414146 C T AHNAK2 Missense_Mutation p.D2548N 0.10 benign(0.135) TCGA-CW-5585-01 14 55510990 55510991 - T SOCS4 Frame_Shift_Ins p.P412Sfs*14 0.28 TCGA-CW-5585-01 15 45559654 45559654 C T SLC28A2 Missense_Mutation p.T315I 0.29 deleterious(0) possibly_damaging(0.739) TCGA-CW-5585-01 15 49170357 49170357 G C EID1 5'UTR 0.29 TCGA-CW-5585-01 15 50891477 50891477 T C TRPM7 Missense_Mutation p.Y1002C 0.32 deleterious(0.01) probably_damaging(0.981) TCGA-CW-5585-01 15 59146745 59146745 G A FAM63B Missense_Mutation p.R601Q 0.59 tolerated(0.1) possibly_damaging(0.885) TCGA-CW-5585-01 16 23646730 23646730 C G PALB2 Missense_Mutation p.K379N 0.03 tolerated(0.07) benign(0.067) TCGA-CW-5585-01 16 50357601 50357601 T C BRD7 Missense_Mutation p.E447G 0.39 deleterious(0.01) possibly_damaging(0.648) TCGA-CW-5585-01 16 84215642 84215642 G T TAF1C Silent p.T248T 0.33 TCGA-CW-5585-01 17 26723137 26723137 G A SARM1 Intron 0.52 TCGA-CW-5585-01 17 649388 649388 A T GEMIN4 Missense_Mutation p.M632K 0.32 deleterious(0) benign(0.156) TCGA-CW-5585-01 17 67310577 67310577 A - ABCA5 Intron 0.26 TCGA-CW-5585-01 18 14104777 14104777 A C ZNF519 3'UTR 0.25 TCGA-CW-5585-01 18 15325895 15325895 C A RNU6-721P 5'Flank 0.29 TCGA-CW-5585-01 19 45997582 45997582 G A RTN2 Missense_Mutation p.P219L 0.25 deleterious_low_confidence(0.03) benign(0.36) TCGA-CW-5585-01 19 59011001 59011001 G A SLC27A5 Missense_Mutation p.R509C 0.54 tolerated(0.06) benign(0.064) TCGA-CW-5585-01 19 8196481 8196481 G A FBN3 Silent p.H649H 0.19 TCGA-CW-5585-01 19 8322788 8322790 AGT - CERS4 In_Frame_Del p.Q256_Y257delinsH 0.40 TCGA-CW-5585-01 1 100488064 100488064 T C SLC35A3 3'UTR 0.36 TCGA-CW-5585-01 1 119575670 119575670 G C WARS2 Missense_Mutation p.P316R 0.38 deleterious(0) probably_damaging(1) TCGA-CW-5585-01 1 150192837 150192837 A C ANP32E 3'UTR 0.48 TCGA-CW-5585-01 1 155169611 155169612 CA - THBS3 Nonsense_Mutation p.C621* 0.31 TCGA-CW-5585-01 1 26609138 26609138 A C UBXN11 Splice_Site p.X431_splice 0.39 TCGA-CW-5585-01 20 44663593 44663593 G A SLC12A5 Missense_Mutation p.G43D 0.45 tolerated(0.08) benign(0.071) TCGA-CW-5585-01 21 43533907 43533907 G T UMODL1 Nonsense_Mutation p.E905* 0.39 TCGA-CW-5585-01 2 152107578 152107581 TCTC - RBM43 Frame_Shift_Del p.E305Kfs*3 0.38 TCGA-CW-5585-01 2 165946947 165946947 T C SCN3A Missense_Mutation p.I1906V 0.07 tolerated(1) benign(0.048) TCGA-CW-5585-01 2 179255817 179255817 T G OSBPL6 Silent p.S798S 0.32 TCGA-CW-5585-01 2 215839587 215839587 T A ABCA12 Missense_Mutation p.N1795Y 0.35 deleterious(0) probably_damaging(0.995) TCGA-CW-5585-01 2 61575328 61575328 G A USP34 Silent p.C654C 0.42 TCGA-CW-5585-01 3 113723397 113723397 G T KIAA1407 Intron 0.35 TCGA-CW-5585-01 3 126062574 126062574 T C KLF15 Missense_Mutation p.N416S 0.11 tolerated(0.07) possibly_damaging(0.636) TCGA-CW-5585-01 3 132389115 132389115 A G UBA5 Missense_Mutation p.M161V 0.33 tolerated(0.35) benign(0.013) TCGA-CW-5585-01 3 148559631 148559631 A T CPB1 Nonsense_Mutation p.K166* 0.39 TCGA-CW-5585-01 3 183390233 183390233 A C KLHL24 Missense_Mutation p.E521D 0.38 tolerated(0.33) benign(0.158) TCGA-CW-5585-01 3 194182931 194182931 A T ATP13A3 5'UTR 0.36 TCGA-CW-5585-01 3 57291081 57291081 T A APPL1 Splice_Site p.X416_splice 0.37 TCGA-CW-5585-01 4 101108875 101108875 G C DDIT4L Missense_Mutation p.L181V 0.33 deleterious(0) probably_damaging(1) TCGA-CW-5585-01 4 55156677 55156677 C A PDGFRA Missense_Mutation p.D1026E 0.40 tolerated(0.07) benign(0.048) TCGA-CW-5585-01 4 57887152 57887152 G A POLR2B Missense_Mutation p.G804D 0.42 deleterious(0) probably_damaging(1) TCGA-CW-5585-01 5 82834255 82834255 T C VCAN Silent p.S1811S 0.46 TCGA-CW-5585-01 6 112430542 112430542 T C LAMA4 3'UTR 0.15 TCGA-CW-5585-01 7 148963737 148963737 G T ZNF783 Silent p.R112R 0.38 TCGA-CW-5585-01 7 18066846 18066846 A G PRPS1L1 Missense_Mutation p.V187A 0.33 tolerated(0.37) benign(0.022) TCGA-CW-5585-01 7 48312610 48312610 A G ABCA13 Missense_Mutation p.E1116G 0.44 benign(0.002) TCGA-CW-5585-01 8 95892600 95892600 G T CCNE2 3'UTR 0.73 TCGA-CW-5585-01 9 113169878 113169878 G C SVEP1 Missense_Mutation p.P2668A 0.39 benign(0.039) TCGA-CW-5585-01 9 114132845 114132845 A T KIAA0368 Missense_Mutation p.L1793Q 0.34 deleterious(0.02) possibly_damaging(0.864) TCGA-CW-5585-01 9 131256871 131256871 A G ODF2 Missense_Mutation p.E612G 0.37 deleterious(0) possibly_damaging(0.477) TCGA-CW-5585-01 9 79318764 79318764 T C PRUNE2 Missense_Mutation p.T2589A 0.29 tolerated(0.76) benign(0.063) TCGA-CW-5585-01 X 49103365 49103365 A G CCDC22 Silent p.S296S 0.14 TCGA-CW-5585-01 X 75003527 75003527 G A MAGEE2 Missense_Mutation p.P454S 0.72 deleterious(0.01) probably_damaging(0.999) TCGA-CW-5587-01 10 121338330 121338337 ATCGCATT - TIAL1 Frame_Shift_Del p.N170Cfs*21 0.13 TCGA-CW-5587-01 10 98819843 98819843 C A SLIT1 Splice_Site p.X338_splice 0.20 TCGA-CW-5587-01 11 10800424 10800424 T A CTR9 Silent p.G1098G 0.22 TCGA-CW-5587-01 11 499078 499078 T C RNH1 Missense_Mutation p.E184G 0.10 deleterious(0) possibly_damaging(0.701) TCGA-CW-5587-01 12 110029066 110029066 C G MVK Silent p.P263P 0.24 TCGA-CW-5587-01 12 21036532 21036532 G C SLCO1B3 Missense_Mutation p.V560L 0.11 tolerated(0.8) benign(0.02) TCGA-CW-5587-01 13 114502380 114502380 C A TMEM255B Silent p.V137V 0.20 TCGA-CW-5587-01 13 35806660 35806660 A G NBEA Missense_Mutation p.K1894E 0.27 deleterious(0.03) probably_damaging(0.975) TCGA-CW-5587-01 14 24711116 24711116 T C TINF2 Missense_Mutation p.I93V 0.42 tolerated(1) benign(0) TCGA-CW-5587-01 15 42456566 42456566 A T VPS39 Missense_Mutation p.F672L 0.18 tolerated(0.17) possibly_damaging(0.465) TCGA-CW-5587-01 15 43661215 43661215 C G ZSCAN29 Missense_Mutation p.R143S 0.24 tolerated(0.19) benign(0.004) TCGA-CW-5587-01 15 44116832 44116832 C G MFAP1 5'UTR 0.26 TCGA-CW-5587-01 15 67494980 67494980 T C AAGAB 3'UTR 0.30 TCGA-CW-5587-01 15 76222530 76222530 G T FBXO22 Intron 0.17 TCGA-CW-5587-01 16 14693777 14693778 - A PARN Frame_Shift_Ins p.H275Lfs*5 0.15 TCGA-CW-5587-01 16 2821999 2821999 C T TCEB2 Missense_Mutation p.V117M 0.08 deleterious_low_confidence(0.02) benign(0.274) TCGA-CW-5587-01 16 2836682 2836682 G A PRSS33 5'UTR 0.23 TCGA-CW-5587-01 16 56717942 56717942 A C MT1X Missense_Mutation p.K56T 0.20 deleterious(0.05) possibly_damaging(0.728) TCGA-CW-5587-01 16 82033107 82033107 T C SDR42E1 Missense_Mutation p.E264G 0.08 deleterious(0) probably_damaging(0.991) TCGA-CW-5587-01 17 19568271 19568271 G A ALDH3A2 Missense_Mutation p.R373Q 0.27 tolerated(0.62) benign(0.013) TCGA-CW-5587-01 17 41738881 41738881 A T MEOX1 Missense_Mutation p.C8S 0.30 deleterious(0) probably_damaging(0.999) TCGA-CW-5587-01 17 43311460 43311460 C A FMNL1 Missense_Mutation p.D169E 0.14 tolerated(0.99) unknown(0) TCGA-CW-5587-01 17 61901749 61901749 T C FTSJ3 Missense_Mutation p.K314E 0.20 tolerated(0.15) benign(0.068) TCGA-CW-5587-01 17 7254667 7254667 G A ACAP1 Missense_Mutation p.D726N 0.19 tolerated(1) benign(0.004) TCGA-CW-5587-01 18 44416434 44416434 G T PIAS2 Missense_Mutation p.T363K 0.19 deleterious(0.01) benign(0.432) TCGA-CW-5587-01 19 15918758 15918758 C G OR10H1 Silent p.L30L 0.21 TCGA-CW-5587-01 19 3542925 3542925 A T MFSD12 Missense_Mutation p.S491T 0.21 benign(0.006) TCGA-CW-5587-01 19 35642268 35642268 G C FXYD7 Intron 0.25 TCGA-CW-5587-01 19 50412320 50412320 G A NUP62 Missense_Mutation p.P249S 0.19 tolerated(0.6) benign(0.007) TCGA-CW-5587-01 19 55401067 55401067 A G FCAR Silent p.A234A 0.21 TCGA-CW-5587-01 1 203816714 203816714 C T ZC3H11A Missense_Mutation p.A482V 0.12 deleterious(0) probably_damaging(0.997) TCGA-CW-5587-01 1 204170892 204170892 G - GOLT1A Frame_Shift_Del p.W57Gfs*81 0.13 TCGA-CW-5587-01 1 39793001 39793001 G T MACF1 Missense_Mutation p.Q1535H 0.18 benign(0.007) TCGA-CW-5587-01 1 89447516 89447516 T - RBMXL1 3'UTR 0.21 TCGA-CW-5587-01 1 979564 979564 G T AGRN Missense_Mutation p.G692V 0.26 deleterious(0) probably_damaging(0.99) TCGA-CW-5587-01 20 16253901 16253901 C T KIF16B Silent p.G502G 0.29 TCGA-CW-5587-01 20 21494115 21494115 A G NKX2-2 Missense_Mutation p.F65L 0.25 tolerated(0.54) benign(0) TCGA-CW-5587-01 20 9520106 9520106 T C PAK7 3'UTR 0.26 TCGA-CW-5587-01 21 43309398 43309398 T - C2CD2 Frame_Shift_Del p.D643Tfs*4 0.18 TCGA-CW-5587-01 22 25010844 25010844 T A GGT1 Missense_Mutation p.L89H 0.24 tolerated(0.19) benign(0.038) TCGA-CW-5587-01 22 31837970 31837977 GTTCTTTG T EIF4ENIF1 Frame_Shift_Del p.E780Ifs*78 0.11 TCGA-CW-5587-01 2 118588255 118588256 AC - DDX18 Frame_Shift_Del p.I658* 0.14 TCGA-CW-5587-01 2 180056539 180056539 C T SESTD1 Silent p.L10L 0.03 TCGA-CW-5587-01 2 230656670 230656671 - A TRIP12 Frame_Shift_Ins p.I1368Yfs*4 0.23 TCGA-CW-5587-01 2 24291331 24291331 T G SF3B14 Splice_Site p.X50_splice 0.33 TCGA-CW-5587-01 3 10191482 10191482 A - VHL Frame_Shift_Del p.E160Sfs*10 0.21 TCGA-CW-5587-01 3 108147581 108147581 C T MYH15 Missense_Mutation p.E1174K 0.22 deleterious(0) possibly_damaging(0.527) TCGA-CW-5587-01 3 37547521 37547535 ACCCGTCCACCATTG - ITGA9 In_Frame_Del p.P259_D263del 0.22 TCGA-CW-5587-01 4 104104049 104104050 - TTT CENPE Splice_Site p.X278_splice 0.20 TCGA-CW-5587-01 4 169817709 169817709 T C PALLD Missense_Mutation p.S737P 0.11 tolerated(0.26) benign(0) TCGA-CW-5587-01 4 184367866 184367866 C G CDKN2AIP Silent p.S343S 0.18 TCGA-CW-5587-01 4 663907 663907 C T PDE6B 3'UTR 0.23 TCGA-CW-5587-01 4 76726404 76726404 A G USO1 Missense_Mutation p.Q755R 0.21 tolerated(0.52) benign(0.001) TCGA-CW-5587-01 5 134118755 134118755 A T DDX46 Missense_Mutation p.K389M 0.19 deleterious(0) benign(0.285) TCGA-CW-5587-01 5 140262051 140262051 G A PCDHA13 Silent p.V66V 0.21 TCGA-CW-5587-01 5 159849806 159849806 G A PTTG1 Missense_Mutation p.R61K 0.32 deleterious(0.02) possibly_damaging(0.681) TCGA-CW-5587-01 5 172571624 172571624 C T BNIP1 Missense_Mutation p.L26F 0.13 deleterious(0.04) benign(0.067) TCGA-CW-5587-01 5 176008505 176008505 C T CDHR2 Silent p.R660R 0.21 TCGA-CW-5587-01 5 179025775 179025775 T G RUFY1 Missense_Mutation p.S572A 0.18 tolerated(0.86) benign(0.001) TCGA-CW-5587-01 5 180582060 180582060 C A OR2V2 Missense_Mutation p.L40I 0.16 tolerated(0.12) possibly_damaging(0.476) TCGA-CW-5587-01 5 54737724 54737724 A T PPAP2A Nonsense_Mutation p.Y169* 0.16 TCGA-CW-5587-01 5 76028210 76028210 C T F2R Missense_Mutation p.P54S 0.17 tolerated(0.06) benign(0.007) TCGA-CW-5587-01 6 112510389 112510389 C T LAMA4 Missense_Mutation p.G246D 0.20 deleterious(0.05) possibly_damaging(0.792) TCGA-CW-5587-01 6 132891895 132891895 C T TAAR6 Silent p.T145T 0.23 TCGA-CW-5587-01 6 134495177 134495177 T C SGK1 Missense_Mutation p.E160G 0.21 deleterious(0.04) benign(0.007) TCGA-CW-5587-01 6 13620528 13620528 T G NOL7 Missense_Mutation p.S197A 0.20 tolerated(0.55) benign(0.049) TCGA-CW-5587-01 6 168315384 168315384 C A MLLT4 Missense_Mutation p.D748E 0.23 tolerated(0.08) possibly_damaging(0.908) TCGA-CW-5587-01 6 4117609 4117609 A - ECI2 Frame_Shift_Del p.F321Sfs*14 0.15 TCGA-CW-5587-01 6 84634206 84634206 G T CYB5R4 Missense_Mutation p.V237L 0.16 tolerated(0.1) possibly_damaging(0.868) TCGA-CW-5587-01 7 123599552 123599552 C A SPAM1 Silent p.L353L 0.09 TCGA-CW-5587-01 7 131084092 131084092 G T MKLN1 Missense_Mutation p.K201N 0.25 tolerated(0.54) benign(0.004) TCGA-CW-5587-01 7 149171502 149171502 C A ZNF746 Silent p.L637L 0.38 TCGA-CW-5587-01 8 101157311 101157311 G C FBXO43 Missense_Mutation p.T18S 0.22 deleterious_low_confidence(0.02) benign(0.124) TCGA-CW-5587-01 8 101300372 101300372 T C RNF19A Missense_Mutation p.K11E 0.25 tolerated_low_confidence(0.16) benign(0) TCGA-CW-5587-01 8 39606845 39606845 G A ADAM2 Missense_Mutation p.P667L 0.21 tolerated(0.17) benign(0.002) TCGA-CW-5587-01 8 61735246 61735254 GGGAGTCAA TGAC CHD7 Nonsense_Mutation p.G1048* 0.12 TCGA-CW-5587-01 8 87951874 87951874 C T CNBD1 Missense_Mutation p.S108F 0.14 tolerated(0.07) probably_damaging(0.972) TCGA-CW-5587-01 9 115962232 115962232 A C FKBP15 Silent p.A170A 0.13 TCGA-CW-5587-01 9 125936074 125936074 A T STRBP Missense_Mutation p.V91D 0.23 deleterious(0) probably_damaging(0.998) TCGA-CW-5587-01 9 131583127 131583127 G A ENDOG Missense_Mutation p.R204K 0.20 tolerated(0.42) possibly_damaging(0.738) TCGA-CW-5587-01 9 18770663 18770663 G A ADAMTSL1 Missense_Mutation p.D761N 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-CW-5587-01 9 6610322 6610322 A G GLDC Missense_Mutation p.S169P 0.19 deleterious(0) probably_damaging(0.91) TCGA-CW-5587-01 X 129190099 129190099 T G BCORL1 Silent p.S1708S 0.19 TCGA-CW-5587-01 X 135827431 135827431 C T ARHGEF6 Missense_Mutation p.G137E 0.24 tolerated_low_confidence(0.44) benign(0.017) TCGA-CW-5587-01 X 153760443 153760443 C T G6PD Missense_Mutation p.E503K 0.30 deleterious(0.01) benign(0.113) TCGA-CW-5587-01 X 19373483 19373484 - T PDHA1 Frame_Shift_Ins p.Y246Lfs*16 0.19 TCGA-CW-5587-01 X 26157996 26157996 C G MAGEB18 Silent p.A298A 0.25 TCGA-CW-5587-01 X 79965025 79965025 G A BRWD3 Missense_Mutation p.R793C 0.05 deleterious(0) possibly_damaging(0.872) TCGA-CW-5587-01 X 9665443 9665443 C A TBL1X Missense_Mutation p.A363D 0.21 tolerated(0.2) possibly_damaging(0.515) TCGA-CW-5591-01 10 114901063 114901063 G T TCF7L2 Missense_Mutation p.D225Y 0.29 deleterious(0) probably_damaging(1) TCGA-CW-5591-01 11 134252621 134252621 C T B3GAT1 Missense_Mutation p.A301T 0.26 deleterious(0) probably_damaging(0.995) TCGA-CW-5591-01 11 14889185 14889185 G C PDE3B Missense_Mutation p.G1007A 0.03 tolerated(0.17) probably_damaging(0.999) TCGA-CW-5591-01 12 110897606 110897606 G T GPN3 Silent p.P112P 0.15 TCGA-CW-5591-01 12 117723925 117723925 T A NOS1 Missense_Mutation p.Q425L 0.37 deleterious(0.01) possibly_damaging(0.574) TCGA-CW-5591-01 12 53188042 53188042 G A KRT3 Missense_Mutation p.S240F 0.10 deleterious(0.01) possibly_damaging(0.519) TCGA-CW-5591-01 12 6493822 6493822 C G LTBR Missense_Mutation p.H55Q 0.26 tolerated(0.26) benign(0.183) TCGA-CW-5591-01 14 75136696 75136696 G A AREL1 Missense_Mutation p.T581I 0.34 deleterious(0) probably_damaging(0.998) TCGA-CW-5591-01 14 80669184 80669184 C A DIO2 Missense_Mutation p.G260W 0.24 deleterious(0.03) probably_damaging(1) TCGA-CW-5591-01 14 86088605 86088605 C T FLRT2 Silent p.L249L 0.17 TCGA-CW-5591-01 15 40710513 40710513 A G IVD 3'UTR 0.19 TCGA-CW-5591-01 15 42984786 42984786 T C STARD9 Silent p.D3670D 0.09 TCGA-CW-5591-01 15 60715740 60715740 T C NARG2 3'UTR 0.06 TCGA-CW-5591-01 15 72432091 72432091 C T SENP8 Nonsense_Mutation p.Q43* 0.28 TCGA-CW-5591-01 16 2546380 2546380 C A RP11-20I23.1 Silent p.I77I 0.19 TCGA-CW-5591-01 16 57713136 57713136 C A GPR97 Silent p.R180R 0.19 TCGA-CW-5591-01 16 68156583 68156583 G C NFATC3 Missense_Mutation p.R266T 0.17 deleterious(0) probably_damaging(0.997) TCGA-CW-5591-01 16 69074260 69074260 T G TANGO6 Missense_Mutation p.V1015G 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-CW-5591-01 17 5463038 5463038 T CTC NLRP1 Frame_Shift_Ins p.P327Sfs*4 0.32 TCGA-CW-5591-01 18 11999101 11999101 T G IMPA2 Missense_Mutation p.S49A 0.21 tolerated(0.09) benign(0.01) TCGA-CW-5591-01 19 22574443 22574443 T C ZNF98 Missense_Mutation p.I532V 0.20 tolerated(0.4) benign(0.003) TCGA-CW-5591-01 19 6218035 6218035 C T MLLT1 Silent p.P376P 0.45 TCGA-CW-5591-01 1 201398087 201398087 A T RP11-134G8.2 5'Flank 0.38 TCGA-CW-5591-01 1 234541769 234541769 G A TARBP1 Missense_Mutation p.A1290V 0.09 deleterious(0) probably_damaging(0.998) TCGA-CW-5591-01 1 55638068 55638068 G A USP24 Silent p.L228L 0.20 TCGA-CW-5591-01 1 55642117 55642117 C A USP24 Splice_Site p.X164_splice 0.21 TCGA-CW-5591-01 22 22899415 22899415 A T PRAME 5'UTR 0.38 TCGA-CW-5591-01 22 22899416 22899416 A T PRAME 5'UTR 0.38 TCGA-CW-5591-01 22 24921682 24921682 A G UPB1 Missense_Mutation p.T359A 0.17 deleterious(0.02) possibly_damaging(0.869) TCGA-CW-5591-01 2 159537192 159537192 T G PKP4 3'UTR 0.52 TCGA-CW-5591-01 2 187693068 187693068 A C ZSWIM2 Silent p.P515P 0.15 TCGA-CW-5591-01 3 10191590 10191590 C T VHL Nonsense_Mutation p.Q195* 0.24 TCGA-CW-5591-01 3 152880567 152880567 A G RAP2B Missense_Mutation p.I29V 0.51 tolerated(1) benign(0.005) TCGA-CW-5591-01 3 42679500 42679500 T G NKTR Silent p.V768V 0.22 TCGA-CW-5591-01 3 44489465 44489465 C A ZNF445 Missense_Mutation p.K566N 0.25 deleterious(0.03) benign(0.403) TCGA-CW-5591-01 3 47143043 47143043 C A SETD2 Missense_Mutation p.W1640C 0.31 deleterious(0) possibly_damaging(0.9) TCGA-CW-5591-01 4 152212274 152212274 A G PRSS48 Missense_Mutation p.D219G 0.27 deleterious(0) probably_damaging(1) TCGA-CW-5591-01 4 2498774 2498774 A C RNF4 Missense_Mutation p.Q17P 0.30 tolerated(0.21) possibly_damaging(0.616) TCGA-CW-5591-01 4 90874205 90874205 C T MMRN1 Missense_Mutation p.T1108M 0.25 deleterious(0) probably_damaging(0.984) TCGA-CW-5591-01 5 132424155 132424155 G T HSPA4 Missense_Mutation p.A349S 0.26 tolerated(0.09) possibly_damaging(0.764) TCGA-CW-5591-01 5 194972 194972 C G LRRC14B Missense_Mutation p.T350S 0.39 tolerated(0.33) benign(0.039) TCGA-CW-5591-01 6 37603708 37603708 A T MDGA1 3'UTR 0.30 TCGA-CW-5591-01 6 43417778 43417778 G C ABCC10 Missense_Mutation p.Q1476H 0.13 tolerated(0.55) possibly_damaging(0.888) TCGA-CW-5591-01 6 56357868 56357868 A T DST Missense_Mutation p.L4182H 0.28 probably_damaging(1) TCGA-CW-5591-01 7 81635088 81635088 C A CACNA2D1 Missense_Mutation p.R503L 0.21 deleterious(0.02) benign(0.081) TCGA-CW-5591-01 9 2823805 2823805 C G KIAA0020 Missense_Mutation p.K388N 0.11 deleterious(0) probably_damaging(0.996) TCGA-CW-5591-01 9 97055309 97055309 C G ZNF169 Missense_Mutation p.P72A 0.21 deleterious(0.03) benign(0.23) TCGA-CW-5591-01 X 103358772 103358772 G T ZCCHC18 5'UTR 0.29 TCGA-CW-5591-01 X 17653571 17653571 T C NHS Intron 0.45 TCGA-CW-6087-01 10 103345853 103345853 T A POLL Missense_Mutation p.E59V 0.12 deleterious(0) possibly_damaging(0.623) TCGA-CW-6087-01 10 107005305 107005305 C A SORCS3 Silent p.L958L 0.08 TCGA-CW-6087-01 10 107005306 107005306 A T SORCS3 Missense_Mutation p.I959F 0.08 deleterious(0) probably_damaging(0.938) TCGA-CW-6087-01 10 37508065 37508065 A T ANKRD30A Missense_Mutation p.K1086M 0.08 deleterious(0) probably_damaging(0.926) TCGA-CW-6087-01 10 81272911 81272911 G A EIF5AL1 3'UTR 0.12 TCGA-CW-6087-01 10 86007363 86007363 C A RGR Missense_Mutation p.S32R 0.03 tolerated(0.36) possibly_damaging(0.5) TCGA-CW-6087-01 11 55340433 55340433 C A OR4C16 Missense_Mutation p.T277K 0.07 deleterious(0) probably_damaging(0.988) TCGA-CW-6087-01 11 64082235 64082235 G A ESRRA Silent p.V198V 0.09 TCGA-CW-6087-01 11 64888968 64888968 T C FAU Intron 0.12 TCGA-CW-6087-01 11 68575043 68575043 C T CPT1A Nonsense_Mutation p.W115* 0.12 TCGA-CW-6087-01 11 78176959 78176959 A C NARS2 Missense_Mutation p.F376C 0.13 deleterious(0) probably_damaging(1) TCGA-CW-6087-01 12 122399903 122399904 GG - WDR66 Frame_Shift_Del p.R776Kfs*48 0.12 TCGA-CW-6087-01 12 70049005 70049005 A C BEST3 Missense_Mutation p.S563R 0.06 tolerated_low_confidence(0.44) benign(0.003) TCGA-CW-6087-01 13 99083408 99083408 G T FARP1 Missense_Mutation p.V673L 0.09 deleterious(0) possibly_damaging(0.619) TCGA-CW-6087-01 14 51131954 51131954 C A SAV1 Nonsense_Mutation p.E160* 0.15 TCGA-CW-6087-01 14 77929008 77929008 T C AHSA1 Silent p.D126D 0.18 TCGA-CW-6087-01 14 96775900 96775900 C G ATG2B Missense_Mutation p.G1398A 0.07 tolerated(0.67) benign(0.247) TCGA-CW-6087-01 15 90293454 90293454 A T MESP1 Missense_Mutation p.L243H 0.10 deleterious_low_confidence(0) benign(0.431) TCGA-CW-6087-01 17 1549693 1549693 C G RILP 3'UTR 0.16 TCGA-CW-6087-01 17 16527779 16527779 C G ZNF624 Missense_Mutation p.A141P 0.11 tolerated(0.31) benign(0.024) TCGA-CW-6087-01 17 18144912 18144912 C T LLGL1 Silent p.L884L 0.06 TCGA-CW-6087-01 17 48683592 48683592 G A CACNA1G Intron 0.44 TCGA-CW-6087-01 17 48940954 48940954 A G TOB1 Missense_Mutation p.I142T 0.12 deleterious(0.04) benign(0.255) TCGA-CW-6087-01 17 72942800 72942801 - A OTOP3 Frame_Shift_Ins p.A285Sfs*15 0.10 TCGA-CW-6087-01 17 74936814 74936814 G A MGAT5B Missense_Mutation p.V587M 0.12 deleterious(0) possibly_damaging(0.879) TCGA-CW-6087-01 18 54424323 54424323 A G WDR7 Silent p.V833V 0.11 TCGA-CW-6087-01 18 72998494 72998494 G A TSHZ1 Missense_Mutation p.E333K 0.16 tolerated(0.19) possibly_damaging(0.65) TCGA-CW-6087-01 19 13865150 13865150 T C CCDC130 Silent p.P17P 0.04 TCGA-CW-6087-01 19 1612391 1612391 C A TCF3 Intron 0.10 TCGA-CW-6087-01 19 18960913 18960913 A G UPF1 Missense_Mutation p.K164R 0.11 tolerated(0.49) benign(0.069) TCGA-CW-6087-01 19 19427268 19427268 T G SUGP1 Missense_Mutation p.N57H 0.10 deleterious(0.01) benign(0.429) TCGA-CW-6087-01 19 38591731 38591731 G A SIPA1L3 Missense_Mutation p.A632T 0.20 deleterious(0.01) possibly_damaging(0.53) TCGA-CW-6087-01 1 152538366 152538366 T G LCE3E 3'UTR 0.10 TCGA-CW-6087-01 1 156255181 156255181 C T TMEM79 Missense_Mutation p.S55F 0.07 deleterious_low_confidence(0) possibly_damaging(0.748) TCGA-CW-6087-01 1 181732642 181732642 T C CACNA1E Missense_Mutation p.L1597P 0.06 deleterious(0) probably_damaging(0.928) TCGA-CW-6087-01 1 201980279 201980279 T - ELF3 Frame_Shift_Del p.C5Wfs*38 0.15 TCGA-CW-6087-01 1 20470069 20470069 G A PLA2G2F Silent p.K100K 0.09 TCGA-CW-6087-01 1 21268372 21268372 C T EIF4G3 Silent p.T375T 0.10 TCGA-CW-6087-01 1 24410862 24410862 T A MYOM3 Intron 0.20 TCGA-CW-6087-01 1 24484205 24484205 T C IFNLR1 Silent p.E326E 0.14 TCGA-CW-6087-01 1 26355761 26355761 T A EXTL1 Missense_Mutation p.F286Y 0.13 deleterious(0) probably_damaging(0.919) TCGA-CW-6087-01 1 42730816 42730816 T A FOXJ3 Missense_Mutation p.K138N 0.08 deleterious(0) probably_damaging(1) TCGA-CW-6087-01 1 62341007 62341007 T A INADL Silent p.L976L 0.09 TCGA-CW-6087-01 1 87025997 87025997 C T CLCA4 Missense_Mutation p.P135L 0.11 deleterious(0) possibly_damaging(0.744) TCGA-CW-6087-01 20 17434533 17434533 C T PCSK2 Silent p.D344D 0.20 TCGA-CW-6087-01 20 42199332 42199332 G C SGK2 Missense_Mutation p.A206P 0.18 deleterious(0) probably_damaging(1) TCGA-CW-6087-01 20 44538612 44538612 G T PLTP Missense_Mutation p.R100S 0.19 tolerated(0.96) benign(0.075) TCGA-CW-6087-01 20 47292733 47292733 G T PREX1 Missense_Mutation p.Q555K 0.11 deleterious(0) probably_damaging(0.95) TCGA-CW-6087-01 21 39671492 39671492 T G KCNJ15 Missense_Mutation p.N103K 0.10 tolerated(0.09) benign(0.004) TCGA-CW-6087-01 22 30951966 30951966 C A GAL3ST1 Missense_Mutation p.K82N 0.12 deleterious(0) probably_damaging(0.994) TCGA-CW-6087-01 2 141122269 141122269 C T LRP1B Missense_Mutation p.D3698N 0.11 possibly_damaging(0.831) TCGA-CW-6087-01 2 26654795 26654795 A T DRC1 Missense_Mutation p.E270V 0.06 deleterious(0) probably_damaging(0.977) TCGA-CW-6087-01 2 98828414 98828414 C G VWA3B Missense_Mutation p.L587V 0.09 deleterious(0.01) benign(0.443) TCGA-CW-6087-01 3 123471302 123471302 G A MYLK Silent p.C83C 0.07 TCGA-CW-6087-01 3 186508173 186508173 T C RFC4 Missense_Mutation p.D275G 0.08 tolerated(0.06) benign(0.001) TCGA-CW-6087-01 3 195594610 195594610 C T TNK2 Silent p.P916P 0.09 TCGA-CW-6087-01 3 38783881 38783881 G T SCN10A Silent p.L669L 0.13 TCGA-CW-6087-01 3 58490979 58490979 A G ACOX2 Missense_Mutation p.L673P 0.13 deleterious(0) probably_damaging(0.968) TCGA-CW-6087-01 4 69692199 69692199 C T UGT2B10 Silent p.P357P 0.10 TCGA-CW-6087-01 4 71232724 71232724 G T SMR3A 3'UTR 0.11 TCGA-CW-6087-01 5 121187839 121187839 C T FTMT Missense_Mutation p.P61S 0.25 tolerated(0.38) benign(0) TCGA-CW-6087-01 5 124079840 124079840 C T ZNF608 Silent p.L281L 0.08 TCGA-CW-6087-01 5 139930679 139930679 G T SRA1 Missense_Mutation p.P156T 0.12 deleterious(0.03) possibly_damaging(0.712) TCGA-CW-6087-01 5 140209579 140209579 C T PCDHA6 Missense_Mutation p.R635C 0.07 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-CW-6087-01 5 159680734 159680734 G A CCNJL Missense_Mutation p.P320L 0.06 tolerated(0.39) benign(0.071) TCGA-CW-6087-01 5 43295906 43295906 T A HMGCS1 Missense_Mutation p.N285Y 0.13 tolerated(0.05) benign(0.014) TCGA-CW-6087-01 5 60394842 60394842 A G NDUFAF2 Missense_Mutation p.T81A 0.04 tolerated(0.68) benign(0.09) TCGA-CW-6087-01 5 82834030 82834030 T A VCAN Silent p.S1736S 0.09 TCGA-CW-6087-01 6 25830810 25830810 T C SLC17A1 5'UTR 0.12 TCGA-CW-6087-01 6 27860940 27860940 T C HIST1H2AM 5'UTR 0.11 TCGA-CW-6087-01 6 46800830 46800830 G A MEP1A Nonsense_Mutation p.W388* 0.06 TCGA-CW-6087-01 6 51618022 51618022 T C PKHD1 Missense_Mutation p.K2976R 0.07 tolerated(0.2) benign(0.258) TCGA-CW-6087-01 6 56501389 56501389 T A DST Missense_Mutation p.E472V 0.09 probably_damaging(0.999) TCGA-CW-6087-01 6 90573113 90573113 T A CASP8AP2 RNA 0.19 TCGA-CW-6087-01 7 101925178 101925178 T G SH2B2 5'Flank 0.31 TCGA-CW-6087-01 7 116415115 116415115 T A MET Missense_Mutation p.V1088E 0.28 deleterious(0) probably_damaging(0.993) TCGA-CW-6087-01 7 151807716 151807716 G C GALNT11 Missense_Mutation p.E356Q 0.30 deleterious(0) probably_damaging(1) TCGA-CW-6087-01 7 53103958 53103958 C T POM121L12 Silent p.F198F 0.10 TCGA-CW-6087-01 8 101724674 101724674 A G PABPC1 Silent p.L296L 0.15 TCGA-CW-6087-01 8 131880119 131880119 G T ADCY8 Missense_Mutation p.A728E 0.12 deleterious(0.02) benign(0.169) TCGA-CW-6087-01 8 16032735 16032735 C G MSR1 Missense_Mutation p.V60L 0.10 deleterious(0.04) benign(0.133) TCGA-CW-6087-01 8 22084409 22084409 A G PHYHIP Missense_Mutation p.Y99H 0.08 tolerated(0.05) probably_damaging(0.959) TCGA-CW-6087-01 8 67748020 67748020 T C SGK3 Missense_Mutation p.L183P 0.14 tolerated(0.25) possibly_damaging(0.567) TCGA-CW-6087-01 9 131864768 131864768 G A CRAT Nonsense_Mutation p.R181* 0.11 TCGA-CW-6087-01 9 71628711 71628711 C T PRKACG Missense_Mutation p.D100N 0.12 tolerated(1) benign(0.005) TCGA-CW-6087-01 9 88193989 88193989 T C AGTPBP1 Missense_Mutation p.H1023R 0.15 tolerated(0.17) benign(0.016) TCGA-CW-6087-01 X 152719888 152719888 T C HAUS7 Missense_Mutation p.I347V 0.24 tolerated(0.47) benign(0.023) TCGA-CW-6087-01 X 99662750 99662750 G A PCDH19 Silent p.N282N 0.17 TCGA-CW-6090-01 10 127442319 127442319 A C EDRF1 Missense_Mutation p.E1150D 0.32 tolerated(0.37) benign(0.019) TCGA-CW-6090-01 10 30316647 30316647 G C KIAA1462 Missense_Mutation p.C810W 0.22 deleterious(0) probably_damaging(1) TCGA-CW-6090-01 10 45644312 45644312 A C RP11-445N18.7 RNA 0.44 TCGA-CW-6090-01 11 22397594 22397594 C A SLC17A6 Nonsense_Mutation p.S414* 0.36 TCGA-CW-6090-01 11 45925699 45925699 C T MAPK8IP1 Silent p.P551P 0.31 TCGA-CW-6090-01 11 57505890 57505890 T - TMX2 Frame_Shift_Del p.D143Efs*8 0.26 TCGA-CW-6090-01 11 60183976 60183976 C A MS4A14 Missense_Mutation p.S545Y 0.37 tolerated(1) benign(0.222) TCGA-CW-6090-01 11 61539075 61539075 G A MYRF Missense_Mutation p.V282M 0.32 tolerated(0.94) benign(0.005) TCGA-CW-6090-01 11 72005414 72005414 C T CLPB Silent p.E575E 0.24 TCGA-CW-6090-01 11 8940960 8940960 T G AKIP1 Nonsense_Mutation p.L189* 0.34 TCGA-CW-6090-01 11 92702959 92702959 C A MTNR1B Nonsense_Mutation p.S23* 0.57 TCGA-CW-6090-01 12 104698324 104698325 - T EID3 Frame_Shift_Ins p.L205Ffs*8 0.22 TCGA-CW-6090-01 12 123497230 123497232 ATA - PITPNM2 In_Frame_Del p.Y115del 0.42 TCGA-CW-6090-01 12 124839984 124839984 G A NCOR2 Silent p.I1125I 0.26 TCGA-CW-6090-01 12 15103538 15103538 C T ARHGDIB Missense_Mutation p.E37K 0.36 deleterious(0.02) benign(0.145) TCGA-CW-6090-01 12 46760917 46760917 T C SLC38A2 Silent p.A141A 0.34 TCGA-CW-6090-01 12 57864596 57864613 CATCACTGAGAATGCTGC - GLI1 In_Frame_Del p.I692_A697del 0.16 TCGA-CW-6090-01 12 57995122 57995122 C G PIP4K2C Silent p.V392V 0.32 TCGA-CW-6090-01 12 7079388 7079388 G A PHB2 Silent p.D61D 0.32 TCGA-CW-6090-01 12 72068028 72068028 T G THAP2 Silent p.V39V 0.32 TCGA-CW-6090-01 12 88588684 88588684 C G TMTC3 Missense_Mutation p.A668G 0.30 tolerated(0.34) benign(0.36) TCGA-CW-6090-01 13 109779862 109779862 G A MYO16 Missense_Mutation p.A1317T 0.30 deleterious(0.02) possibly_damaging(0.808) TCGA-CW-6090-01 13 88329649 88329649 G A SLITRK5 Missense_Mutation p.S669N 0.18 deleterious(0.01) benign(0.235) TCGA-CW-6090-01 14 67147886 67147886 C T GPHN Silent p.L42L 0.45 TCGA-CW-6090-01 14 74327307 74327307 A - PTGR2 Frame_Shift_Del p.N35Mfs*22 0.31 TCGA-CW-6090-01 15 25220568 25220568 G T SNRPN Missense_Mutation p.D23Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-CW-6090-01 15 49423011 49423011 G T COPS2 Missense_Mutation p.A324D 0.37 deleterious(0) probably_damaging(0.945) TCGA-CW-6090-01 15 52571772 52571772 C A MYO5C Nonsense_Mutation p.E80* 0.39 TCGA-CW-6090-01 15 65499201 65499201 C T CILP Missense_Mutation p.E115K 0.19 tolerated(1) possibly_damaging(0.892) TCGA-CW-6090-01 15 81046666 81046666 A G ABHD17C Silent p.L315L 0.32 TCGA-CW-6090-01 15 89056233 89056233 C T DET1 Silent p.R545R 0.39 TCGA-CW-6090-01 15 90022631 90022631 G A RHCG Silent p.T253T 0.44 TCGA-CW-6090-01 16 10997656 10997656 C G CIITA Missense_Mutation p.P281A 0.39 tolerated(0.06) probably_damaging(1) TCGA-CW-6090-01 16 1827748 1827748 C G SPSB3 Missense_Mutation p.G241R 0.31 deleterious(0) probably_damaging(0.99) TCGA-CW-6090-01 16 69199288 69199288 C T CIRH1A Silent p.S564S 0.36 TCGA-CW-6090-01 16 81118200 81118200 C A GCSH Splice_Site p.X98_splice 0.28 TCGA-CW-6090-01 16 88694152 88694152 C T ZC3H18 Missense_Mutation p.S744F 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CW-6090-01 16 89804478 89804478 G C ZNF276 Missense_Mutation p.D557H 0.21 deleterious(0.01) probably_damaging(1) TCGA-CW-6090-01 17 1559850 1559855 GTAAGT - PRPF8 In_Frame_Del p.H1875_L1876del 0.37 TCGA-CW-6090-01 17 2577360 2577360 T C PAFAH1B1 Silent p.C226C 0.36 TCGA-CW-6090-01 17 26965110 26965110 A G KIAA0100 Silent p.G505G 0.19 TCGA-CW-6090-01 17 3657179 3657179 G C ITGAE Silent p.S475S 0.37 TCGA-CW-6090-01 17 62964436 62964436 G T AMZ2P1 RNA 0.38 TCGA-CW-6090-01 17 74625522 74625522 T C ST6GALNAC1 Missense_Mutation p.N135D 0.37 benign(0.001) TCGA-CW-6090-01 17 78215586 78215586 C T SLC26A11 Silent p.Y334Y 0.28 TCGA-CW-6090-01 18 22056745 22056745 A G HRH4 Missense_Mutation p.K131R 0.30 tolerated(0.53) benign(0.009) TCGA-CW-6090-01 18 29867421 29867421 G A GAREM Missense_Mutation p.T380I 0.44 deleterious(0) possibly_damaging(0.829) TCGA-CW-6090-01 18 346953 346953 C A COLEC12 Silent p.L223L 0.40 TCGA-CW-6090-01 19 10574570 10574570 G C PDE4A Missense_Mutation p.Q615H 0.23 tolerated(0.21) benign(0.015) TCGA-CW-6090-01 19 2211150 2211150 G A DOT1L Silent p.Q468Q 0.13 TCGA-CW-6090-01 19 39038896 39038896 G A RYR1 Missense_Mutation p.A4040T 0.35 benign(0) TCGA-CW-6090-01 19 40520538 40520538 C T ZNF546 Missense_Mutation p.T454M 0.30 deleterious(0.01) possibly_damaging(0.791) TCGA-CW-6090-01 19 422337 422337 G T SHC2 Missense_Mutation p.P477T 0.29 tolerated(0.29) probably_damaging(1) TCGA-CW-6090-01 19 46119737 46119737 G A EML2 Silent p.S698S 0.29 TCGA-CW-6090-01 19 49510383 49510383 G C RUVBL2 Missense_Mutation p.R125P 0.27 deleterious(0) benign(0.032) TCGA-CW-6090-01 19 51215207 51215207 G A SHANK1 Silent p.H319H 0.33 TCGA-CW-6090-01 19 8976796 8976796 T C MUC16 Silent p.P14090P 0.21 TCGA-CW-6090-01 1 145507665 145507665 A T RBM8A 5'UTR 0.73 TCGA-CW-6090-01 1 151740639 151740639 G T OAZ3 Missense_Mutation p.G92C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CW-6090-01 1 152785104 152785104 G C LCE1B Missense_Mutation p.G61A 0.59 tolerated_low_confidence(0.3) unknown(0) TCGA-CW-6090-01 1 15541519 15541519 T C TMEM51 5'UTR 0.06 TCGA-CW-6090-01 1 158368416 158368416 C G OR10T2 Missense_Mutation p.V281L 0.56 tolerated(0.26) possibly_damaging(0.461) TCGA-CW-6090-01 1 17748729 17748729 G A RCC2 Silent p.N238N 0.42 TCGA-CW-6090-01 1 197024881 197024881 C T F13B Missense_Mutation p.E440K 0.13 tolerated(0.5) benign(0.206) TCGA-CW-6090-01 1 215990344 215990344 C T USH2A Missense_Mutation p.A3189T 0.63 benign(0.002) TCGA-CW-6090-01 1 29585159 29585159 C T PTPRU Silent p.T116T 0.22 TCGA-CW-6090-01 1 35250435 35250435 G A GJB3 Nonsense_Mutation p.W24* 0.20 TCGA-CW-6090-01 1 36319144 36319144 C T AGO4 Nonsense_Mutation p.Q842* 0.35 TCGA-CW-6090-01 1 47401310 47401310 C T CYP4A11 Missense_Mutation p.E174K 0.12 deleterious(0.04) possibly_damaging(0.718) TCGA-CW-6090-01 1 87031612 87031612 T C CLCA4 Missense_Mutation p.M288T 0.39 deleterious(0.04) benign(0.086) TCGA-CW-6090-01 1 87805280 87805280 G A LMO4 Missense_Mutation p.V100I 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-CW-6090-01 20 18794406 18794406 G A SCP2D1 5'UTR 0.39 TCGA-CW-6090-01 20 61576211 61576214 AAAT - GID8 Frame_Shift_Del p.K212Ifs*4 0.32 TCGA-CW-6090-01 21 34053921 34053921 T G SYNJ1 Missense_Mutation p.E452A 0.38 deleterious(0.03) probably_damaging(0.96) TCGA-CW-6090-01 22 39777742 39777742 C G SYNGR1 Silent p.G175G 0.26 TCGA-CW-6090-01 22 42949958 42949958 C T SERHL2 5'UTR 0.15 TCGA-CW-6090-01 22 46792566 46792566 C T CELSR1 Missense_Mutation p.G1927S 0.32 tolerated(1) benign(0.004) TCGA-CW-6090-01 2 101883240 101883240 A G CNOT11 Missense_Mutation p.I379M 0.36 deleterious(0) probably_damaging(0.995) TCGA-CW-6090-01 2 110922222 110922222 G T NPHP1 Missense_Mutation p.L272I 0.31 tolerated_low_confidence(0.39) benign(0.001) TCGA-CW-6090-01 2 158595006 158595006 T C ACVR1 Silent p.V447V 0.30 TCGA-CW-6090-01 2 28752187 28752187 T - PLB1 Frame_Shift_Del p.S111Qfs*39 0.22 TCGA-CW-6090-01 2 7023569 7023569 G A RSAD2 Silent p.K138K 0.38 TCGA-CW-6090-01 2 71299849 71299849 G C NAGK Missense_Mutation p.G191A 0.27 deleterious(0) probably_damaging(1) TCGA-CW-6090-01 3 10191540 10191541 - G VHL Frame_Shift_Ins p.D179Gfs*77 0.33 TCGA-CW-6090-01 3 119367299 119367299 G A POPDC2 Missense_Mutation p.P273S 0.49 tolerated(0.07) benign(0.082) TCGA-CW-6090-01 3 129696118 129696118 C T TRH 3'UTR 0.33 TCGA-CW-6090-01 3 148928072 148928072 T C CP Silent p.E163E 0.21 TCGA-CW-6090-01 3 50380356 50380356 C T ZMYND10 Silent p.R231R 0.50 TCGA-CW-6090-01 3 58619924 58619924 T G FAM3D 3'UTR 0.59 TCGA-CW-6090-01 3 9495474 9495474 C A SETD5 Missense_Mutation p.P800T 0.48 deleterious(0.04) benign(0.301) TCGA-CW-6090-01 4 129012653 129012653 T C LARP1B Silent p.Y218Y 0.40 TCGA-CW-6090-01 4 154504367 154504367 A G KIAA0922 Missense_Mutation p.I306M 0.41 tolerated(0.55) possibly_damaging(0.805) TCGA-CW-6090-01 4 169100409 169100409 G T ANXA10 Missense_Mutation p.D224Y 0.48 deleterious(0.01) probably_damaging(0.939) TCGA-CW-6090-01 4 17506031 17506031 C T QDPR Missense_Mutation p.G89E 0.43 deleterious(0) probably_damaging(1) TCGA-CW-6090-01 4 25834685 25834685 C T SEL1L3 Missense_Mutation p.V344I 0.16 tolerated(0.1) possibly_damaging(0.855) TCGA-CW-6090-01 4 82366985 82366985 T C RASGEF1B Missense_Mutation p.Y246C 0.41 deleterious(0.01) possibly_damaging(0.762) TCGA-CW-6090-01 5 112437520 112437520 C T MCC Missense_Mutation p.M438I 0.39 tolerated(0.32) possibly_damaging(0.758) TCGA-CW-6090-01 5 1443043 1443044 - CACA SLC6A3 Frame_Shift_Ins p.Y91Vfs*107 0.30 TCGA-CW-6090-01 5 145969638 145969638 C A PPP2R2B Missense_Mutation p.D405Y 0.34 deleterious(0.02) benign(0.066) TCGA-CW-6090-01 5 148590289 148590289 G T ABLIM3 Missense_Mutation p.K192N 0.32 deleterious(0.01) probably_damaging(0.969) TCGA-CW-6090-01 5 180424374 180424374 A C BTNL3 Missense_Mutation p.S187R 0.18 deleterious(0.04) benign(0.037) TCGA-CW-6090-01 5 71494891 71494891 C A MAP1B Silent p.G1903G 0.32 TCGA-CW-6090-01 6 10586869 10586869 C - GCNT2 Intron 0.35 TCGA-CW-6090-01 6 106553602 106553602 G A PRDM1 Missense_Mutation p.A523T 0.38 deleterious(0.01) probably_damaging(0.957) TCGA-CW-6090-01 6 21594792 21594792 G C SOX4 Missense_Mutation p.E9D 0.36 deleterious(0.02) possibly_damaging(0.907) TCGA-CW-6090-01 6 46660119 46660119 C T TDRD6 Silent p.C1418C 0.18 TCGA-CW-6090-01 6 46830726 46830726 T G GPR116 Missense_Mutation p.I700L 0.34 tolerated(0.24) benign(0.001) TCGA-CW-6090-01 6 7229380 7229380 G A RREB1 Missense_Mutation p.A350T 0.16 tolerated(0.3) benign(0.008) TCGA-CW-6090-01 7 134134487 134134487 A - AKR1B1 Frame_Shift_Del p.L139Wfs*16 0.30 TCGA-CW-6090-01 7 33376135 33376135 C G BBS9 Missense_Mutation p.Q367E 0.42 tolerated(0.24) possibly_damaging(0.774) TCGA-CW-6090-01 7 5391571 5391571 C T TNRC18 Silent p.A1783A 0.35 TCGA-CW-6090-01 7 55886846 55886846 C T SEPT14 Missense_Mutation p.R264H 0.69 deleterious(0) probably_damaging(0.976) TCGA-CW-6090-01 8 163325 163325 C T RPL23AP53 RNA 0.28 TCGA-CW-6090-01 8 38272389 38272389 C G FGFR1 Missense_Mutation p.V660L 0.27 deleterious(0) probably_damaging(0.994) TCGA-CW-6090-01 8 55542521 55542521 G A RP1 Missense_Mutation p.D2027N 0.20 tolerated(0.55) benign(0.002) TCGA-CW-6090-01 8 87591035 87591035 A T CNGB3 Missense_Mutation p.L662H 0.40 tolerated(0.48) benign(0.031) TCGA-CW-6090-01 9 114429212 114429212 T C DNAJC25-GNG10 Silent p.L152L 0.17 TCGA-CW-6090-01 9 127733961 127733961 G A SCAI Missense_Mutation p.S544L 0.57 deleterious(0.03) benign(0.088) TCGA-CW-6090-01 9 131331096 131331096 A T SPTAN1 Missense_Mutation p.N95Y 0.48 deleterious(0.01) benign(0.274) TCGA-CW-6090-01 9 135102354 135102354 C A NTNG2 Silent p.R326R 0.27 TCGA-CW-6090-01 9 2652826 2652826 T A VLDLR Missense_Mutation p.N821K 0.26 deleterious(0.02) possibly_damaging(0.479) TCGA-CW-6090-01 9 69200146 69200146 C A FOXD4L6 3'UTR 0.17 TCGA-CW-6090-01 9 84532047 84532047 G T SPATA31D5P RNA 0.25 TCGA-CW-6090-01 X 54841822 54841822 G C MAGED2 Missense_Mutation p.E510Q 0.81 deleterious(0.01) probably_damaging(0.999) TCGA-CW-6090-01 X 75648791 75648791 C T MAGEE1 Silent p.A156A 0.67 TCGA-CW-6093-01 10 107016626 107016626 G A SORCS3 Missense_Mutation p.M1129I 0.35 tolerated(0.05) benign(0.2) TCGA-CW-6093-01 10 24669919 24669919 C T KIAA1217 Missense_Mutation p.P159L 0.27 deleterious(0.01) probably_damaging(1) TCGA-CW-6093-01 10 62039296 62039296 C G ANK3 Missense_Mutation p.Q72H 0.20 probably_damaging(0.998) TCGA-CW-6093-01 10 75884279 75884279 G A AP3M1 Silent p.L339L 0.33 TCGA-CW-6093-01 10 99509236 99509236 A G ZFYVE27 Missense_Mutation p.Y186C 0.21 deleterious(0) probably_damaging(0.982) TCGA-CW-6093-01 11 102650395 102650395 T - MMP10 Frame_Shift_Del p.I63Sfs*12 0.17 TCGA-CW-6093-01 11 120980198 120980198 C T TECTA Silent p.S159S 0.24 TCGA-CW-6093-01 11 123598248 123598248 C T ZNF202 Nonsense_Mutation p.W296* 0.29 TCGA-CW-6093-01 11 124135620 124135620 G A OR8G5 Missense_Mutation p.V300I 0.28 deleterious_low_confidence(0.05) benign(0.108) TCGA-CW-6093-01 11 17118795 17118795 A G PIK3C2A Silent p.L1379L 0.25 TCGA-CW-6093-01 11 18314494 18314494 G T HPS5 Missense_Mutation p.P605Q 0.28 tolerated(0.33) benign(0.126) TCGA-CW-6093-01 11 46439573 46439574 AG - AMBRA1 Frame_Shift_Del p.P912Rfs*17 0.18 TCGA-CW-6093-01 11 55653105 55653105 C A TRIM51 Missense_Mutation p.D67E 0.12 deleterious(0) benign(0.04) TCGA-CW-6093-01 11 55658689 55658689 G T TRIM51 Missense_Mutation p.D314Y 0.22 deleterious(0.03) benign(0.379) TCGA-CW-6093-01 11 61120499 61120499 G A CYB561A3 Missense_Mutation p.A186V 0.23 tolerated(0.19) possibly_damaging(0.86) TCGA-CW-6093-01 11 63990606 63990607 AG - FERMT3 Frame_Shift_Del p.K590Nfs*24 0.22 TCGA-CW-6093-01 11 92543049 92543049 C G FAT3 Missense_Mutation p.I3096M 0.25 benign(0.315) TCGA-CW-6093-01 11 94219122 94219122 G T MRE11A Silent p.L94L 0.23 TCGA-CW-6093-01 12 111893890 111893890 A C ATXN2 Missense_Mutation p.H1229Q 0.22 probably_damaging(0.997) TCGA-CW-6093-01 12 111893891 111893891 T A ATXN2 Missense_Mutation p.H1229L 0.23 probably_damaging(0.997) TCGA-CW-6093-01 12 121442228 121442228 G C C12orf43 Missense_Mutation p.Q173E 0.25 deleterious(0.02) benign(0.028) TCGA-CW-6093-01 12 122656992 122656992 T C IL31 Silent p.S154S 0.18 TCGA-CW-6093-01 12 12483626 12483626 A C MANSC1 Missense_Mutation p.S211A 0.30 tolerated(0.29) benign(0.006) TCGA-CW-6093-01 12 50050231 50050231 C T FMNL3 Missense_Mutation p.G281R 0.33 deleterious(0) probably_damaging(0.995) TCGA-CW-6093-01 12 55846275 55846275 A G OR6C2 Missense_Mutation p.N93S 0.23 tolerated_low_confidence(0.09) benign(0.075) TCGA-CW-6093-01 12 64671569 64671569 T C C12orf56 Missense_Mutation p.N282S 0.19 tolerated(0.52) possibly_damaging(0.491) TCGA-CW-6093-01 12 65085342 65085342 G C RASSF3 Missense_Mutation p.E184Q 0.32 deleterious(0.01) possibly_damaging(0.764) TCGA-CW-6093-01 12 82796821 82796821 A G METTL25 Missense_Mutation p.I397M 0.17 tolerated(0.31) probably_damaging(0.992) TCGA-CW-6093-01 13 45589098 45589098 C A GPALPP1 Missense_Mutation p.S140R 0.18 deleterious(0) benign(0.318) TCGA-CW-6093-01 14 23444054 23444054 G - AJUBA Frame_Shift_Del p.S473Lfs*8 0.18 TCGA-CW-6093-01 14 23458974 23458974 T A C14orf93 Missense_Mutation p.N354I 0.20 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-CW-6093-01 14 32619205 32619205 A G ARHGAP5 Silent p.P1347P 0.24 TCGA-CW-6093-01 14 55655785 55655785 T C DLGAP5 Missense_Mutation p.E38G 0.23 tolerated(0.08) possibly_damaging(0.811) TCGA-CW-6093-01 14 58714515 58714515 A G PSMA3 Silent p.Q23Q 0.28 TCGA-CW-6093-01 15 56208025 56208025 G A NEDD4 Silent p.P335P 0.23 TCGA-CW-6093-01 15 87066159 87066159 C A AGBL1 Silent p.R846R 0.13 TCGA-CW-6093-01 15 89869918 89869918 C T POLG Missense_Mutation p.R546H 0.34 deleterious(0.05) benign(0.002) TCGA-CW-6093-01 15 90616318 90616318 A C ZNF710 Missense_Mutation p.K492Q 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-CW-6093-01 16 1825568 1825568 A C EME2 Splice_Site p.X222_splice 0.08 TCGA-CW-6093-01 16 28508786 28508786 A G APOBR Silent p.E808E 0.30 TCGA-CW-6093-01 16 67166430 67166430 T G C16orf70 Splice_Site p.X119_splice 0.28 TCGA-CW-6093-01 16 69681465 69681465 A T NFAT5 Missense_Mutation p.K263I 0.17 benign(0.421) TCGA-CW-6093-01 16 72991477 72991477 G A ZFHX3 Silent p.P856P 0.24 TCGA-CW-6093-01 16 89345631 89345631 T G ANKRD11 Missense_Mutation p.E2440A 0.26 probably_damaging(0.996) TCGA-CW-6093-01 17 10356638 10356638 T - MYH4 Frame_Shift_Del p.N981Tfs*16 0.19 TCGA-CW-6093-01 17 31266546 31266546 G A TMEM98 Silent p.L155L 0.05 TCGA-CW-6093-01 17 57057344 57057344 A C PPM1E Missense_Mutation p.E407A 0.28 tolerated(0.08) probably_damaging(0.98) TCGA-CW-6093-01 17 64222147 64222147 C T APOH Missense_Mutation p.G113R 0.27 deleterious(0) probably_damaging(1) TCGA-CW-6093-01 17 7224466 7224466 C G NEURL4 Missense_Mutation p.E1109Q 0.20 tolerated(0.3) benign(0.219) TCGA-CW-6093-01 18 10697808 10697808 C T PIEZO2 Silent p.R2142R 0.22 TCGA-CW-6093-01 18 7036007 7036007 C T LAMA1 Silent p.S606S 0.21 TCGA-CW-6093-01 19 12848342 12848342 G A ASNA1 Nonsense_Mutation p.W8* 0.33 TCGA-CW-6093-01 19 18255405 18255405 A G MAST3 Missense_Mutation p.K876R 0.13 tolerated_low_confidence(0.81) benign(0.012) TCGA-CW-6093-01 19 3523035 3523035 G C FZR1 Missense_Mutation p.Q16H 0.26 tolerated_low_confidence(0.11) benign(0.008) TCGA-CW-6093-01 19 36831956 36831956 A G ZFP14 Missense_Mutation p.C258R 0.23 deleterious(0) probably_damaging(1) TCGA-CW-6093-01 19 375847 375847 C T THEG Missense_Mutation p.V42I 0.30 tolerated_low_confidence(0.49) benign(0.023) TCGA-CW-6093-01 19 49934326 49934326 G A SLC17A7 Silent p.G445G 0.26 TCGA-CW-6093-01 19 8807902 8807902 C T ACTL9 Missense_Mutation p.G384S 0.24 deleterious(0) probably_damaging(1) TCGA-CW-6093-01 1 109805009 109805009 G A CELSR2 Missense_Mutation p.G1496E 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-CW-6093-01 1 158057581 158057581 C G KIRREL Missense_Mutation p.T233R 0.17 deleterious(0.01) probably_damaging(0.937) TCGA-CW-6093-01 1 158152008 158152008 C A CD1D Missense_Mutation p.T172K 0.18 deleterious(0) possibly_damaging(0.778) TCGA-CW-6093-01 1 160167357 160167357 A G CASQ1 Splice_Site p.X261_splice 0.29 TCGA-CW-6093-01 1 200587653 200587653 A T KIF14 Missense_Mutation p.Y67N 0.26 deleterious(0) probably_damaging(1) TCGA-CW-6093-01 1 223983955 223983955 C T TP53BP2 Silent p.R762R 0.23 TCGA-CW-6093-01 1 240071728 240071728 A G CHRM3 Missense_Mutation p.Q326R 0.14 tolerated(0.72) benign(0.003) TCGA-CW-6093-01 1 31532415 31532415 C T PUM1 5'UTR 0.33 TCGA-CW-6093-01 1 38032379 38032379 A T DNALI1 3'UTR 0.28 TCGA-CW-6093-01 1 39909151 39909151 C G MACF1 Missense_Mutation p.L4387V 0.19 probably_damaging(0.918) TCGA-CW-6093-01 1 46087629 46087629 G - CCDC17 Frame_Shift_Del p.Q336Nfs*34 0.27 TCGA-CW-6093-01 1 52287168 52287169 - C NRD1 Splice_Site p.X474_splice 0.25 TCGA-CW-6093-01 1 57044640 57044640 C G PPAP2B Missense_Mutation p.G17A 0.17 tolerated_low_confidence(0.15) possibly_damaging(0.55) TCGA-CW-6093-01 1 93163497 93163497 C T EVI5 Missense_Mutation p.D273N 0.23 tolerated(0.05) possibly_damaging(0.475) TCGA-CW-6093-01 1 985343 985343 C A AGRN Missense_Mutation p.P1602H 0.38 tolerated(0.12) possibly_damaging(0.825) TCGA-CW-6093-01 20 39796506 39796506 G T PLCG1 Silent p.G772G 0.23 TCGA-CW-6093-01 20 46365503 46365503 G T SULF2 Missense_Mutation p.A120E 0.19 tolerated(0.3) probably_damaging(0.93) TCGA-CW-6093-01 22 26164741 26164741 A T MYO18B Silent p.G286G 0.41 TCGA-CW-6093-01 22 46725272 46725272 C - GTSE1 Frame_Shift_Del p.K649Nfs*34 0.20 TCGA-CW-6093-01 2 103431455 103431455 G A TMEM182 3'UTR 0.29 TCGA-CW-6093-01 2 109357073 109357073 G A RANBP2 Missense_Mutation p.S304N 0.27 tolerated(0.23) benign(0) TCGA-CW-6093-01 2 128414990 128414990 C G LIMS2 Missense_Mutation p.G77A 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-CW-6093-01 2 131520963 131520963 G A AMER3 Missense_Mutation p.D440N 0.21 deleterious(0.02) possibly_damaging(0.811) TCGA-CW-6093-01 2 168104885 168104885 C T XIRP2 Missense_Mutation p.S2328L 0.28 benign(0.02) TCGA-CW-6093-01 2 179425394 179425394 C G TTN Missense_Mutation p.E28489Q 0.18 TCGA-CW-6093-01 2 179426804 179426804 A T TTN Missense_Mutation p.S28019T 0.25 TCGA-CW-6093-01 2 197184155 197184155 C T HECW2 Missense_Mutation p.G487S 0.24 tolerated_low_confidence(0.06) possibly_damaging(0.734) TCGA-CW-6093-01 2 212252692 212252692 G T ERBB4 Missense_Mutation p.P1054H 0.25 tolerated(0.19) benign(0.436) TCGA-CW-6093-01 2 28467670 28467670 A C BRE Missense_Mutation p.E292A 0.17 tolerated(0.58) benign(0.121) TCGA-CW-6093-01 2 33413692 33413692 A C LTBP1 Missense_Mutation p.E492A 0.22 deleterious(0.04) benign(0.299) TCGA-CW-6093-01 2 55813839 55813840 - A SMEK2 Frame_Shift_Ins p.S344Ffs*26 0.22 TCGA-CW-6093-01 2 79255386 79255386 G T REG3G Missense_Mutation p.C171F 0.14 deleterious(0) probably_damaging(0.984) TCGA-CW-6093-01 3 101090968 101090968 C - SENP7 Frame_Shift_Del p.G227Afs*8 0.24 TCGA-CW-6093-01 3 10188224 10188224 G - VHL Frame_Shift_Del p.T124Hfs*35 0.25 TCGA-CW-6093-01 3 112059811 112059811 G C CD200 Silent p.V50V 0.13 TCGA-CW-6093-01 3 129034182 129034182 C G H1FX Missense_Mutation p.K188N 0.34 deleterious_low_confidence(0.03) unknown(0) TCGA-CW-6093-01 3 142031463 142031463 G A XRN1 Missense_Mutation p.H1599Y 0.27 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-CW-6093-01 3 142430381 142430381 A T PLS1 Missense_Mutation p.L556F 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-CW-6093-01 3 161064028 161064028 G T SPTSSB Silent p.P28P 0.25 TCGA-CW-6093-01 3 184079226 184079226 C G CLCN2 Silent p.A14A 0.19 TCGA-CW-6093-01 3 52682459 52682459 C T PBRM1 Splice_Site p.X239_splice 0.33 TCGA-CW-6093-01 3 77147239 77147239 G A ROBO2 Missense_Mutation p.E62K 0.08 deleterious(0) unknown(0) TCGA-CW-6093-01 4 24534564 24534564 G A DHX15 Missense_Mutation p.R675C 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-CW-6093-01 5 137621758 137621758 G A CDC25C Silent p.L409L 0.30 TCGA-CW-6093-01 5 140049085 140049085 A C WDR55 Missense_Mutation p.D333A 0.29 deleterious(0.01) benign(0.051) TCGA-CW-6093-01 5 38886351 38886351 T C OSMR Intron 0.33 TCGA-CW-6093-01 5 43161423 43161423 A G ZNF131 Silent p.A148A 0.29 TCGA-CW-6093-01 5 53839239 53839239 C A SNX18 Missense_Mutation p.L618I 0.28 deleterious(0.01) possibly_damaging(0.6) TCGA-CW-6093-01 6 149699871 149699872 - T TAB2 Frame_Shift_Ins p.N274Ifs*30 0.20 TCGA-CW-6093-01 6 161470927 161470927 G T MAP3K4 Missense_Mutation p.K541N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-CW-6093-01 6 161507426 161507426 G A MAP3K4 Silent p.E796E 0.15 TCGA-CW-6093-01 6 161507427 161507427 A T MAP3K4 Missense_Mutation p.I797F 0.17 deleterious(0.01) benign(0.323) TCGA-CW-6093-01 6 32942463 32942463 T C BRD2 Missense_Mutation p.V85A 0.20 deleterious(0.05) benign(0.151) TCGA-CW-6093-01 6 36103575 36103575 G T MAPK13 Missense_Mutation p.M118I 0.23 tolerated(0.74) benign(0.241) TCGA-CW-6093-01 6 43013037 43013037 T C CUL7 Missense_Mutation p.Y1073C 0.27 tolerated(0.13) probably_damaging(0.944) TCGA-CW-6093-01 7 100815757 100815757 G C NAT16 Missense_Mutation p.P238R 0.27 tolerated(0.15) possibly_damaging(0.822) TCGA-CW-6093-01 7 127721977 127721977 A G SND1 Intron 0.15 TCGA-CW-6093-01 7 131191353 131191353 C G PODXL Missense_Mutation p.E412Q 0.23 tolerated(0.13) possibly_damaging(0.511) TCGA-CW-6093-01 7 140301525 140301525 T C DENND2A Missense_Mutation p.R225G 0.22 tolerated(0.16) benign(0) TCGA-CW-6093-01 7 143079761 143079761 G A ZYX Missense_Mutation p.D162N 0.17 tolerated(0.07) probably_damaging(0.992) TCGA-CW-6093-01 7 150174244 150174244 C T GIMAP8 Silent p.I458I 0.39 TCGA-CW-6093-01 7 156752790 156752790 T G NOM1 Silent p.A518A 0.20 TCGA-CW-6093-01 7 4198097 4198097 C A SDK1 Missense_Mutation p.S1548Y 0.30 tolerated(0.05) possibly_damaging(0.723) TCGA-CW-6093-01 8 144657613 144657613 A - NAPRT1 Frame_Shift_Del p.F424Sfs*17 0.22 TCGA-CW-6093-01 8 25167958 25167958 C A DOCK5 Missense_Mutation p.L410I 0.05 tolerated(0.66) benign(0.027) TCGA-CW-6093-01 8 38827144 38827144 C A PLEKHA2 Nonsense_Mutation p.S374* 0.50 TCGA-CW-6093-01 8 49832751 49832751 T A SNAI2 Missense_Mutation p.E110V 0.30 tolerated(0.29) benign(0.035) TCGA-CW-6093-01 8 98787866 98787866 G T LAPTM4B 5'UTR 0.47 TCGA-CW-6093-01 9 108127774 108127774 A - SLC44A1 Frame_Shift_Del p.N422Ifs*11 0.20 TCGA-CW-6093-01 9 126144388 126144388 G A DENND1A Missense_Mutation p.L785F 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CW-6093-01 9 140249170 140249170 G T EXD3 Nonsense_Mutation p.C271* 0.37 TCGA-CW-6093-01 9 35562911 35562911 C A FAM166B Missense_Mutation p.E151D 0.28 tolerated(0.36) benign(0.221) TCGA-CW-6093-01 9 37500907 37500907 C T POLR1E Silent p.Y319Y 0.40 TCGA-CW-6093-01 X 140994794 140994794 G C MAGEC1 Missense_Mutation p.S535T 0.52 deleterious_low_confidence(0) benign(0.153) TCGA-CW-6093-01 X 153051518 153051518 G A IDH3G Intron 0.50 TCGA-CW-6093-01 X 35974189 35974189 G A CXorf22 Missense_Mutation p.R429H 0.50 tolerated(0.79) benign(0.004) TCGA-CW-6093-01 X 49851500 49851500 C T CLCN5 Silent p.V510V 0.52 TCGA-CW-6093-01 X 51075924 51075924 T C NUDT10 Missense_Mutation p.V36A 0.44 deleterious(0) probably_damaging(0.961) TCGA-CW-6097-01 11 124121094 124121094 C G OR8G1 Missense_Mutation p.S224R 0.10 deleterious_low_confidence(0.03) benign(0.093) TCGA-CW-6097-01 11 56113847 56113847 G T OR8K1 Missense_Mutation p.E111D 0.10 tolerated_low_confidence(0.06) benign(0.004) TCGA-CW-6097-01 12 55759683 55759683 A G OR6C75 Silent p.R263R 0.10 TCGA-CW-6097-01 12 6161870 6161870 C T VWF Silent p.P675P 0.10 TCGA-CW-6097-01 13 27829665 27829665 G T RPL21 Intron 0.10 TCGA-CW-6097-01 16 66420782 66420782 G T CDH5 Missense_Mutation p.R94L 0.07 tolerated(0.18) benign(0.064) TCGA-CW-6097-01 16 67237658 67237658 A T ELMO3 Missense_Mutation p.M734L 0.12 deleterious(0.01) possibly_damaging(0.826) TCGA-CW-6097-01 16 71318686 71318686 G A CMTR2 Missense_Mutation p.R380C 0.12 deleterious(0.04) benign(0.032) TCGA-CW-6097-01 17 10297708 10297708 G A MYH8 Missense_Mutation p.A1675V 0.13 deleterious(0.05) benign(0.247) TCGA-CW-6097-01 19 4816506 4816506 C A TICAM1 Silent p.P628P 0.17 TCGA-CW-6097-01 19 55889522 55889522 A G TMEM190 Missense_Mutation p.E162G 0.11 tolerated_low_confidence(0.35) unknown(0) TCGA-CW-6097-01 19 56185302 56185302 C - U2AF2 Frame_Shift_Del p.F433Lfs*17 0.13 TCGA-CW-6097-01 1 248551308 248551308 T C OR2T6 Silent p.P133P 0.06 TCGA-CW-6097-01 1 27105895 27105896 - A ARID1A Frame_Shift_Ins p.F1837Vfs*2 0.10 TCGA-CW-6097-01 20 62194306 62194306 C T HELZ2 Missense_Mutation p.A1957T 0.56 deleterious(0) possibly_damaging(0.856) TCGA-CW-6097-01 2 128408751 128408751 G A GPR17 Missense_Mutation p.A176T 0.09 deleterious(0) probably_damaging(0.999) TCGA-CW-6097-01 2 228235653 228235653 G A TM4SF20 Missense_Mutation p.A76V 0.10 deleterious(0.01) benign(0.394) TCGA-CW-6097-01 2 233675977 233675977 C T GIGYF2 Missense_Mutation p.A662V 0.06 possibly_damaging(0.761) TCGA-CW-6097-01 2 242277165 242277165 A C SEPT2 Missense_Mutation p.D185A 0.07 deleterious(0) probably_damaging(1) TCGA-CW-6097-01 3 142840289 142840289 T G CHST2 Missense_Mutation p.S211A 0.09 tolerated(0.17) probably_damaging(0.982) TCGA-CW-6097-01 3 172835272 172835272 G A SPATA16 Missense_Mutation p.R84W 0.04 tolerated(0.14) possibly_damaging(0.835) TCGA-CW-6097-01 3 52437530 52437533 ATGC - BAP1 Frame_Shift_Del p.C543Yfs*27 0.14 TCGA-CW-6097-01 4 82355860 82355860 A C RASGEF1B Missense_Mutation p.I378S 0.10 deleterious(0) possibly_damaging(0.826) TCGA-CW-6097-01 6 44414450 44414450 G - CDC5L 3'UTR 0.10 TCGA-CW-6097-01 7 23313757 23313757 C T GPNMB Missense_Mutation p.L545F 0.05 tolerated(0.81) benign(0.012) TCGA-CW-6097-01 7 97363056 97363056 G C TAC1 Missense_Mutation p.E49Q 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-CW-6097-01 8 51569552 51569552 G T SNTG1 Missense_Mutation p.R311S 0.09 deleterious(0.03) possibly_damaging(0.858) TCGA-CW-6097-01 X 153927719 153927719 G A GAB3 Missense_Mutation p.P399S 0.06 deleterious(0.03) probably_damaging(1) TCGA-CW-6097-01 X 54955458 54955458 C T TRO Silent p.A767A 0.14 TCGA-CZ-4853-01 10 24910118 24910118 C T ARHGAP21 Missense_Mutation p.V236I 0.32 tolerated(0.31) benign(0.012) TCGA-CZ-4853-01 10 30315665 30315665 G A KIAA1462 Missense_Mutation p.P1138S 0.36 tolerated(0.21) benign(0.159) TCGA-CZ-4853-01 10 6067797 6067797 C G IL2RA Missense_Mutation p.A86P 0.39 tolerated(0.17) benign(0.265) TCGA-CZ-4853-01 10 70507264 70507264 C A CCAR1 Missense_Mutation p.S256Y 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-CZ-4853-01 11 130064609 130064609 A T ST14 Missense_Mutation p.I364F 0.41 deleterious(0.01) benign(0.049) TCGA-CZ-4853-01 11 1492592 1492592 G T MOB2 Nonsense_Mutation p.Y141* 0.36 TCGA-CZ-4853-01 11 26694953 26694953 T A SLC5A12 Missense_Mutation p.E568V 0.37 tolerated(0.26) benign(0.007) TCGA-CZ-4853-01 11 61725623 61725623 G A BEST1 Silent p.V180V 0.50 TCGA-CZ-4853-01 11 92534186 92534186 G T FAT3 Silent p.L2669L 0.34 TCGA-CZ-4853-01 12 102179968 102179968 T C GNPTAB Silent p.T131T 0.45 TCGA-CZ-4853-01 12 103311031 103311031 G A PAH 5'UTR 0.43 TCGA-CZ-4853-01 12 107209026 107209026 G T RIC8B Nonsense_Mutation p.E229* 0.38 TCGA-CZ-4853-01 12 108145796 108145797 - C PRDM4 Frame_Shift_Ins p.A175Cfs*8 0.34 TCGA-CZ-4853-01 12 111089052 111089052 G TT HVCN1 Frame_Shift_Ins p.R205Kfs*17 0.25 TCGA-CZ-4853-01 12 123282648 123282648 A C CCDC62 Missense_Mutation p.Q293P 0.36 deleterious(0) possibly_damaging(0.449) TCGA-CZ-4853-01 12 130648663 130648663 C A FZD10 Missense_Mutation p.N392K 0.39 tolerated(0.38) benign(0.201) TCGA-CZ-4853-01 12 280284 280284 G A IQSEC3 Missense_Mutation p.R1024K 0.41 tolerated(0.3) benign(0.037) TCGA-CZ-4853-01 12 32491840 32491840 C A BICD1 Silent p.G897G 0.31 TCGA-CZ-4853-01 12 57591375 57591375 G A LRP1 Missense_Mutation p.M3070I 0.39 possibly_damaging(0.761) TCGA-CZ-4853-01 12 6833732 6833732 C A COPS7A Intron 0.48 TCGA-CZ-4853-01 12 81101549 81101549 G T MYF6 Silent p.G17G 0.31 TCGA-CZ-4853-01 12 81101620 81101620 T A MYF6 Nonsense_Mutation p.L41* 0.32 TCGA-CZ-4853-01 13 101277820 101277820 T C TMTC4 Missense_Mutation p.Y602C 0.37 deleterious(0) probably_damaging(0.998) TCGA-CZ-4853-01 13 25670549 25670549 C G PABPC3 Silent p.T71T 0.43 TCGA-CZ-4853-01 13 92051340 92051340 C T GPC5 Missense_Mutation p.L14F 0.23 tolerated(0.34) benign(0.032) TCGA-CZ-4853-01 14 105396381 105396381 T C PLD4 Missense_Mutation p.V219A 0.26 deleterious(0) possibly_damaging(0.777) TCGA-CZ-4853-01 14 22592208 22592208 G C TRAV26-1 Missense_Mutation p.R98T 0.38 deleterious(0.02) benign(0.087) TCGA-CZ-4853-01 14 30132919 30132919 C T PRKD1 Missense_Mutation p.D228N 0.39 tolerated(0.35) benign(0.142) TCGA-CZ-4853-01 14 64457262 64457263 TT A SYNE2 Frame_Shift_Del p.I816Nfs*13 0.25 TCGA-CZ-4853-01 15 101938736 101938737 TT - PCSK6 Frame_Shift_Del p.K289Vfs*33 0.31 TCGA-CZ-4853-01 15 40865743 40865743 G T RPUSD2 Silent p.V307V 0.29 TCGA-CZ-4853-01 15 55621962 55621962 G A PIGB Missense_Mutation p.C188Y 0.41 deleterious(0.03) probably_damaging(0.961) TCGA-CZ-4853-01 15 55722880 55722880 T A DYX1C1 Missense_Mutation p.E417D 0.35 tolerated(0.13) benign(0.145) TCGA-CZ-4853-01 15 60297463 60297463 A T FOXB1 Missense_Mutation p.S101C 0.44 tolerated(0.32) probably_damaging(0.999) TCGA-CZ-4853-01 15 62352506 62352506 T C VPS13C Missense_Mutation p.N23S 0.33 deleterious(0) benign(0.37) TCGA-CZ-4853-01 15 81440807 81440807 A T C15orf26 Missense_Mutation p.D280V 0.25 deleterious(0) possibly_damaging(0.807) TCGA-CZ-4853-01 15 91295052 91295052 G A BLM Missense_Mutation p.E279K 0.33 tolerated(0.05) benign(0.007) TCGA-CZ-4853-01 16 1034895 1034895 G A SOX8 Missense_Mutation p.E284K 0.34 deleterious(0) possibly_damaging(0.756) TCGA-CZ-4853-01 16 2481270 2481270 C T CCNF Silent p.I52I 0.31 TCGA-CZ-4853-01 16 24816069 24816069 C T TNRC6A Missense_Mutation p.S1294F 0.35 deleterious(0.03) probably_damaging(0.915) TCGA-CZ-4853-01 16 29858549 29858549 G A MVP Missense_Mutation p.R766Q 0.35 tolerated(0.29) probably_damaging(0.968) TCGA-CZ-4853-01 16 68598080 68598080 G A ZFP90 Missense_Mutation p.D464N 0.39 tolerated(0.94) benign(0.018) TCGA-CZ-4853-01 17 28750570 28750570 G C CPD Silent p.V568V 0.27 TCGA-CZ-4853-01 17 29664584 29664584 T C NF1 Missense_Mutation p.L2209S 0.33 deleterious(0) probably_damaging(0.986) TCGA-CZ-4853-01 17 39261882 39261882 G A KRTAP4-9 Missense_Mutation p.R81H 0.37 tolerated(0.06) unknown(0) TCGA-CZ-4853-01 17 40762460 40762460 T C TUBG1 Missense_Mutation p.I61T 0.31 tolerated(0.2) probably_damaging(0.986) TCGA-CZ-4853-01 17 41243622 41243622 T A BRCA1 Missense_Mutation p.N1309I 0.39 deleterious(0) possibly_damaging(0.898) TCGA-CZ-4853-01 17 41243623 41243623 T G BRCA1 Missense_Mutation p.N1309H 0.38 deleterious(0) probably_damaging(0.979) TCGA-CZ-4853-01 17 4863167 4863167 A T SPAG7 Silent p.P154P 0.29 TCGA-CZ-4853-01 17 5084849 5084853 TCATA - ZNF594 3'UTR 0.29 TCGA-CZ-4853-01 17 56604047 56604066 GAGGAATCATAGGGATCAAG T SEPT4 Frame_Shift_Del p.L127Mfs*22 0.34 TCGA-CZ-4853-01 17 63049764 63049764 C G GNA13 Missense_Mutation p.M122I 0.36 tolerated(0.58) benign(0.033) TCGA-CZ-4853-01 17 67136859 67136860 - A ABCA6 5'UTR 0.31 TCGA-CZ-4853-01 17 7402879 7402881 AGA - POLR2A Intron 0.45 TCGA-CZ-4853-01 17 7491645 7491645 G T SOX15 3'UTR 0.42 TCGA-CZ-4853-01 17 8738616 8738616 C A PIK3R6 Missense_Mutation p.A207S 0.31 tolerated(0.82) benign(0.017) TCGA-CZ-4853-01 18 42281379 42281379 C G SETBP1 Missense_Mutation p.S23C 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.518) TCGA-CZ-4853-01 18 42281380 42281380 C G SETBP1 Silent p.S23S 0.27 TCGA-CZ-4853-01 19 16620643 16620643 C - C19orf44 Frame_Shift_Del p.L495Wfs*11 0.32 TCGA-CZ-4853-01 19 39694580 39694580 G T SYCN Silent p.A105A 0.46 TCGA-CZ-4853-01 19 51051883 51051883 G C LRRC4B Missense_Mutation p.I71M 0.32 deleterious(0.04) possibly_damaging(0.5) TCGA-CZ-4853-01 19 55599029 55599029 C - EPS8L1 3'UTR 0.32 TCGA-CZ-4853-01 1 109793167 109793167 C T CELSR2 Missense_Mutation p.L156F 0.33 tolerated_low_confidence(0.78) benign(0) TCGA-CZ-4853-01 1 148017563 148017563 A G NBPF14 Silent p.S246S 0.08 TCGA-CZ-4853-01 1 149901785 149901785 G C MTMR11 Silent p.P557P 0.26 TCGA-CZ-4853-01 1 158646048 158646048 A C SPTA1 Missense_Mutation p.L332R 0.33 tolerated(0.5) benign(0.021) TCGA-CZ-4853-01 1 201843415 201843415 G A IPO9 Silent p.K916K 0.37 TCGA-CZ-4853-01 1 205238292 205238292 C T TMCC2 Missense_Mutation p.A321V 0.06 tolerated(0.19) probably_damaging(0.992) TCGA-CZ-4853-01 1 207753683 207753683 G - CR1 Frame_Shift_Del p.G1679Afs*27 0.33 TCGA-CZ-4853-01 1 21186921 21186921 T A EIF4G3 Missense_Mutation p.Q1017H 0.40 tolerated(0.33) probably_damaging(0.998) TCGA-CZ-4853-01 1 33237688 33237688 G A KIAA1522 Missense_Mutation p.A970T 0.07 deleterious(0) probably_damaging(0.999) TCGA-CZ-4853-01 1 3545224 3545224 G C TPRG1L 3'UTR 0.42 TCGA-CZ-4853-01 1 40363241 40363241 G A MYCL Nonsense_Mutation p.R330* 0.39 TCGA-CZ-4853-01 1 65098290 65098290 A - CACHD1 Frame_Shift_Del p.Y167Sfs*12 0.27 TCGA-CZ-4853-01 1 6694078 6694079 AG - THAP3 3'Flank 0.29 TCGA-CZ-4853-01 20 16021897 16021897 A T MACROD2 Missense_Mutation p.D402V 0.34 deleterious_low_confidence(0) benign(0.344) TCGA-CZ-4853-01 20 21492858 21492858 C G NKX2-2 Missense_Mutation p.W175C 0.36 deleterious(0) probably_damaging(1) TCGA-CZ-4853-01 20 33585398 33585398 G C MYH7B Missense_Mutation p.E1276D 0.35 probably_damaging(0.995) TCGA-CZ-4853-01 20 40126775 40126775 C T CHD6 Intron 0.21 TCGA-CZ-4853-01 20 44050027 44050027 C T PIGT Silent p.A346A 0.30 TCGA-CZ-4853-01 20 44575022 44575022 G - PCIF1 Frame_Shift_Del 0.51 TCGA-CZ-4853-01 21 33057924 33057930 TGGAGGA - SCAF4 Frame_Shift_Del p.P721Hfs*25 0.32 TCGA-CZ-4853-01 22 32330002 32330002 C T C22orf24 3'UTR 0.29 TCGA-CZ-4853-01 22 40831553 40831553 T C MKL1 Missense_Mutation p.K5E 0.33 deleterious(0) probably_damaging(0.952) TCGA-CZ-4853-01 22 45601754 45601754 C A KIAA0930 Missense_Mutation p.D91Y 0.44 deleterious(0) possibly_damaging(0.878) TCGA-CZ-4853-01 2 113514506 113514506 T C CKAP2L Missense_Mutation p.K148E 0.37 tolerated(0.18) benign(0.034) TCGA-CZ-4853-01 2 121748151 121748151 C G GLI2 Missense_Mutation p.P1554R 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-CZ-4853-01 2 170081963 170081963 C A LRP2 Missense_Mutation p.G1799C 0.35 probably_damaging(0.997) TCGA-CZ-4853-01 2 170505718 170505718 C A CCDC173 Missense_Mutation p.V431F 0.35 deleterious(0) possibly_damaging(0.746) TCGA-CZ-4853-01 2 17697415 17697415 T A RAD51AP2 Silent p.V756V 0.35 TCGA-CZ-4853-01 2 179591820 179591821 TT C TTN Frame_Shift_Del p.E6759Sfs*11 0.22 TCGA-CZ-4853-01 2 196720578 196720578 G A DNAH7 Missense_Mutation p.T2851I 0.34 tolerated(0.16) benign(0.043) TCGA-CZ-4853-01 2 202598155 202598155 G A ALS2 Silent p.F808F 0.34 TCGA-CZ-4853-01 2 208632143 208632143 C G FZD5 Missense_Mutation p.D441H 0.33 tolerated(0.12) benign(0.25) TCGA-CZ-4853-01 2 224840438 224840438 A G SERPINE2 3'UTR 0.24 TCGA-CZ-4853-01 2 27305278 27305278 C A EMILIN1 Missense_Mutation p.A280D 0.41 benign(0.021) TCGA-CZ-4853-01 2 74598753 74598753 G T DCTN1 Missense_Mutation p.P186T 0.33 tolerated(0.28) benign(0.11) TCGA-CZ-4853-01 3 10183776 10183776 G C VHL Missense_Mutation p.R82P 0.47 deleterious(0) probably_damaging(1) TCGA-CZ-4853-01 3 121554181 121554183 CTC T EAF2 Frame_Shift_Del p.L17* 0.33 TCGA-CZ-4853-01 3 129127513 129127513 C T EFCAB12 Silent p.P408P 0.62 TCGA-CZ-4853-01 3 147131448 147131448 C G ZIC1 3'UTR 0.42 TCGA-CZ-4853-01 3 150645593 150645593 T C CLRN1 3'Flank 0.29 TCGA-CZ-4853-01 3 160227602 160227602 C A KPNA4 Nonsense_Mutation p.G399* 0.32 TCGA-CZ-4853-01 3 52649438 52649438 A T PBRM1 Missense_Mutation p.L618H 0.57 deleterious(0) possibly_damaging(0.79) TCGA-CZ-4853-01 4 110897230 110897230 T - EGF Frame_Shift_Del p.G632Afs*5 0.31 TCGA-CZ-4853-01 4 119626961 119626961 A T METTL14 Missense_Mutation p.S351C 0.34 tolerated(0.06) probably_damaging(0.997) TCGA-CZ-4853-01 4 71275489 71275489 C T PROL1 Silent p.T148T 0.37 TCGA-CZ-4853-01 4 76943924 76943924 A G CXCL10 Silent p.S36S 0.40 TCGA-CZ-4853-01 4 79808404 79808404 T C BMP2K Silent p.D676D 0.25 TCGA-CZ-4853-01 5 134131704 134131704 C A DDX46 Missense_Mutation p.F606L 0.24 tolerated(0.08) benign(0.225) TCGA-CZ-4853-01 5 140559547 140559547 G A PCDHB8 Silent p.L644L 0.29 TCGA-CZ-4853-01 5 159437682 159437682 T C TTC1 Silent p.D49D 0.53 TCGA-CZ-4853-01 5 169174444 169174444 G T DOCK2 Missense_Mutation p.R771I 0.28 deleterious(0.02) benign(0.052) TCGA-CZ-4853-01 5 176084597 176084597 G A TSPAN17 Silent p.Q299Q 0.28 TCGA-CZ-4853-01 5 33576548 33576548 G A ADAMTS12 Missense_Mutation p.P1195S 0.36 tolerated(0.18) benign(0.063) TCGA-CZ-4853-01 6 117113259 117113259 C G GPRC6A 3'UTR 0.61 TCGA-CZ-4853-01 6 17794626 17794626 C A KIF13A Missense_Mutation p.G1026C 0.52 deleterious(0) probably_damaging(1) TCGA-CZ-4853-01 6 25261582 25261582 T - RP3-522P13.3 RNA 0.46 TCGA-CZ-4853-01 7 105401704 105401704 G C ATXN7L1 Intron 0.40 TCGA-CZ-4853-01 7 150390508 150390508 A G GIMAP2 3'UTR 0.25 TCGA-CZ-4853-01 7 150558149 150558149 C G AOC1 Missense_Mutation p.P703R 0.38 deleterious(0.04) benign(0.34) TCGA-CZ-4853-01 7 80433459 80433459 G A SEMA3C Missense_Mutation p.T255M 0.38 tolerated(0.11) probably_damaging(0.999) TCGA-CZ-4853-01 7 99668580 99668580 T C ZNF3 3'UTR 0.45 TCGA-CZ-4853-01 8 121500410 121500410 G A MTBP Missense_Mutation p.E393K 0.33 deleterious(0.03) benign(0.035) TCGA-CZ-4853-01 8 124138304 124138304 T A TBC1D31 Missense_Mutation p.C527S 0.29 deleterious(0.01) probably_damaging(0.955) TCGA-CZ-4853-01 8 142228421 142228421 A G SLC45A4 Missense_Mutation p.Y389H 0.36 tolerated(0.08) benign(0.011) TCGA-CZ-4853-01 8 41792289 41792289 T G KAT6A Missense_Mutation p.K1150T 0.33 probably_damaging(0.995) TCGA-CZ-4853-01 8 62577779 62577779 G T ASPH Intron 0.35 TCGA-CZ-4853-01 8 97342498 97342498 C A PTDSS1 Missense_Mutation p.H411N 0.34 tolerated(0.47) benign(0) TCGA-CZ-4853-01 9 140075307 140075307 A T ANAPC2 Missense_Mutation p.F515I 0.27 deleterious(0) probably_damaging(0.999) TCGA-CZ-4853-01 9 21441003 21441003 T C IFNA1 Missense_Mutation p.V166A 0.27 deleterious(0) possibly_damaging(0.669) TCGA-CZ-4853-01 9 35752830 35752830 T A RGP1 Missense_Mutation p.Y379N 0.41 tolerated(1) benign(0.01) TCGA-CZ-4853-01 9 96070760 96070760 T C WNK2 Missense_Mutation p.V2174A 0.30 unknown(0) TCGA-CZ-4853-01 X 12938126 12938126 T A TLR8 Missense_Mutation p.L323I 0.69 deleterious(0) probably_damaging(1) TCGA-CZ-4853-01 X 48053635 48053635 G T SSX5 Missense_Mutation p.F111L 0.62 deleterious(0) probably_damaging(0.997) TCGA-CZ-4853-01 X 50556986 50556986 G A SHROOM4 Silent p.V11V 0.82 TCGA-CZ-4853-01 X 73962314 73962314 T C KIAA2022 Missense_Mutation p.D693G 0.76 tolerated(0.13) benign(0.008) TCGA-CZ-4856-01 10 108923956 108923956 C A SORCS1 Missense_Mutation p.R110L 0.06 tolerated_low_confidence(0.05) benign(0.048) TCGA-CZ-4856-01 10 135076555 135076555 G T ADAM8 3'UTR 0.05 TCGA-CZ-4856-01 10 74645575 74645578 GATT - MCU Frame_Shift_Del 0.32 TCGA-CZ-4856-01 10 93389894 93389894 G - PPP1R3C Frame_Shift_Del p.N248Kfs*39 0.21 TCGA-CZ-4856-01 11 118083800 118083800 G T AMICA1 Intron 0.16 TCGA-CZ-4856-01 11 124120764 124120764 G A OR8G1 Missense_Mutation p.M114I 0.03 tolerated_low_confidence(0.06) benign(0.012) TCGA-CZ-4856-01 11 30358133 30358133 A T ARL14EP Missense_Mutation p.S192C 0.19 deleterious(0.02) probably_damaging(0.965) TCGA-CZ-4856-01 11 7818120 7818120 T A OR5P2 Missense_Mutation p.S124C 0.08 deleterious(0.02) benign(0.021) TCGA-CZ-4856-01 12 105567935 105567935 C A APPL2 3'Flank 0.29 TCGA-CZ-4856-01 12 13061472 13061472 C G GPRC5A Missense_Mutation p.R97G 0.14 deleterious(0) probably_damaging(1) TCGA-CZ-4856-01 12 13717155 13717155 C G GRIN2B Missense_Mutation p.C1006S 0.05 tolerated(0.4) benign(0.265) TCGA-CZ-4856-01 12 88471086 88471086 A - CEP290 Frame_Shift_Del p.I1874Mfs*11 0.24 TCGA-CZ-4856-01 14 100847481 100847481 G - WDR25 Frame_Shift_Del p.G75Afs*63 0.22 TCGA-CZ-4856-01 14 104465033 104465033 G T TDRD9 Missense_Mutation p.W484L 0.07 deleterious(0) probably_damaging(0.993) TCGA-CZ-4856-01 14 45673409 45673409 C T MIS18BP1 Missense_Mutation p.G1101E 0.11 tolerated(0.07) possibly_damaging(0.637) TCGA-CZ-4856-01 14 57748924 57748924 G A AP5M1 Missense_Mutation p.A356T 0.13 tolerated(0.07) possibly_damaging(0.745) TCGA-CZ-4856-01 14 59951040 59951040 G A L3HYPDH 5'UTR 0.20 TCGA-CZ-4856-01 15 41822090 41822090 G A RPAP1 Missense_Mutation p.P344L 0.18 deleterious(0) probably_damaging(0.997) TCGA-CZ-4856-01 15 43748344 43748344 A C TP53BP1 Missense_Mutation p.L821R 0.03 tolerated_low_confidence(0.1) benign(0.007) TCGA-CZ-4856-01 15 63569840 63569840 C T APH1B Silent p.F6F 0.14 TCGA-CZ-4856-01 16 28909648 28909648 C T ATP2A1 Missense_Mutation p.A547V 0.15 deleterious(0.04) benign(0.081) TCGA-CZ-4856-01 16 57265168 57265168 T C RSPRY1 Missense_Mutation p.M489T 0.17 tolerated(0.76) benign(0) TCGA-CZ-4856-01 17 11593688 11593688 C T DNAH9 Nonsense_Mutation p.R1517* 0.16 TCGA-CZ-4856-01 17 33521121 33521121 G A SLC35G3 Missense_Mutation p.S69L 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-CZ-4856-01 17 34161584 34161584 G A TAF15 Missense_Mutation p.G219R 0.07 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CZ-4856-01 17 5086703 5086703 G T ZNF594 Silent p.V283V 0.17 TCGA-CZ-4856-01 17 55028280 55028280 T A COIL Missense_Mutation p.K108I 0.06 deleterious(0) probably_damaging(0.998) TCGA-CZ-4856-01 17 64800200 64800200 C A PRKCA 3'UTR 0.10 TCGA-CZ-4856-01 17 6594203 6594203 G A SLC13A5 Silent p.P444P 0.20 TCGA-CZ-4856-01 18 42618593 42618593 G A SETBP1 Missense_Mutation p.A1382T 0.22 tolerated(0.48) possibly_damaging(0.461) TCGA-CZ-4856-01 19 2078599 2078599 C G MOB3A 5'UTR 0.18 TCGA-CZ-4856-01 19 42797181 42797181 G C CIC Missense_Mutation p.K1181N 0.21 benign(0.077) TCGA-CZ-4856-01 19 57954668 57954668 A C ZNF749 Missense_Mutation p.H51P 0.24 tolerated(0.21) possibly_damaging(0.703) TCGA-CZ-4856-01 1 152732937 152732937 C - KPRP Frame_Shift_Del p.P292Lfs*79 0.19 TCGA-CZ-4856-01 1 158151284 158151284 C GG CD1D Frame_Shift_Ins p.S34Wfs*6 0.13 TCGA-CZ-4856-01 1 186839572 186839572 G A PLA2G4A Silent p.E13E 0.15 TCGA-CZ-4856-01 1 207867951 207867951 A G CR1L Missense_Mutation p.I239M 0.04 tolerated(0.06) benign(0.202) TCGA-CZ-4856-01 1 34033301 34033301 G A CSMD2 Missense_Mutation p.R2735W 0.11 deleterious(0) probably_damaging(0.996) TCGA-CZ-4856-01 1 35870746 35870746 G A ZMYM4 Nonsense_Mutation p.W1217* 0.07 TCGA-CZ-4856-01 1 36509078 36509078 A G AGO3 Missense_Mutation p.T735A 0.14 deleterious(0) probably_damaging(0.926) TCGA-CZ-4856-01 1 897301 897301 G T KLHL17 Silent p.L195L 0.08 TCGA-CZ-4856-01 1 897302 897302 G T KLHL17 Missense_Mutation p.G196C 0.09 deleterious(0) probably_damaging(0.993) TCGA-CZ-4856-01 20 31291079 31291079 C T COMMD7 3'UTR 0.17 TCGA-CZ-4856-01 20 40944543 40944543 C A PTPRT Silent p.R653R 0.25 TCGA-CZ-4856-01 20 40944544 40944544 C A PTPRT Missense_Mutation p.R653L 0.24 deleterious(0.04) benign(0.061) TCGA-CZ-4856-01 22 24621029 24621029 T C GGT5 Missense_Mutation p.I518V 0.14 deleterious(0.03) benign(0.074) TCGA-CZ-4856-01 22 31302447 31302447 T C OSBP2 3'UTR 0.38 TCGA-CZ-4856-01 2 160585646 160585646 A G MARCH7 Missense_Mutation p.H38R 0.18 tolerated(0.29) benign(0.131) TCGA-CZ-4856-01 2 48809480 48809480 A G STON1-GTF2A1L Missense_Mutation p.I570V 0.06 tolerated(0.21) probably_damaging(0.994) TCGA-CZ-4856-01 3 10188322 10188322 T C VHL Splice_Site p.X155_splice 0.20 TCGA-CZ-4856-01 3 140122558 140122558 G A CLSTN2 Missense_Mutation p.R107H 0.05 deleterious(0.03) benign(0.327) TCGA-CZ-4856-01 3 14964587 14964587 C T FGD5 Missense_Mutation p.P1281L 0.20 deleterious(0) probably_damaging(0.998) TCGA-CZ-4856-01 3 172096213 172096213 C T FNDC3B Silent p.P1054P 0.08 TCGA-CZ-4856-01 3 195009916 195009916 G A ACAP2 Missense_Mutation p.T703I 0.13 tolerated(0.18) benign(0.016) TCGA-CZ-4856-01 3 96706398 96706398 A G EPHA6 Silent p.E225E 0.03 TCGA-CZ-4856-01 4 187201213 187201213 G A F11 Missense_Mutation p.R268H 0.08 tolerated(0.55) possibly_damaging(0.778) TCGA-CZ-4856-01 4 654278 654278 C G PDE6B Missense_Mutation p.T497S 0.22 tolerated(0.34) benign(0.001) TCGA-CZ-4856-01 4 82126123 82126123 G A PRKG2 Missense_Mutation p.R27W 0.18 deleterious(0) possibly_damaging(0.556) TCGA-CZ-4856-01 5 132736492 132736492 C T FSTL4 Missense_Mutation p.R116H 0.20 deleterious(0) probably_damaging(1) TCGA-CZ-4856-01 5 140750994 140750994 C T PCDHGB3 Missense_Mutation p.P345S 0.12 deleterious(0) probably_damaging(0.998) TCGA-CZ-4856-01 5 150519791 150519791 C T ANXA6 Missense_Mutation p.R11Q 0.15 tolerated(0.16) probably_damaging(0.998) TCGA-CZ-4856-01 5 159821039 159821039 C T C5orf54 Missense_Mutation p.D487N 0.06 tolerated(0.24) probably_damaging(0.929) TCGA-CZ-4856-01 6 12120167 12120167 G A HIVEP1 Missense_Mutation p.G47S 0.21 tolerated(0.05) probably_damaging(1) TCGA-CZ-4856-01 6 170070745 170070745 C A WDR27 Missense_Mutation p.V126L 0.06 deleterious(0.01) probably_damaging(0.959) TCGA-CZ-4856-01 6 31846720 31846720 T C SLC44A4 Missense_Mutation p.Y13C 0.05 deleterious(0.03) benign(0.013) TCGA-CZ-4856-01 6 36185716 36185716 A G BRPF3 Silent p.K1004K 0.18 TCGA-CZ-4856-01 6 55620404 55620404 T A BMP5 Missense_Mutation p.Y431F 0.18 tolerated(0.11) possibly_damaging(0.79) TCGA-CZ-4856-01 6 56357198 56357198 G A DST Nonsense_Mutation p.Q4239* 0.20 TCGA-CZ-4856-01 6 6145785 6145785 G A F13A1 3'UTR 0.08 TCGA-CZ-4856-01 6 74354149 74354149 T G SLC17A5 Missense_Mutation p.K91T 0.19 tolerated(0.53) benign(0.009) TCGA-CZ-4856-01 6 79607842 79607842 C A IRAK1BP1 Missense_Mutation p.L192I 0.15 deleterious(0.01) possibly_damaging(0.547) TCGA-CZ-4856-01 7 131194125 131194125 C T PODXL Nonsense_Mutation p.W341* 0.23 TCGA-CZ-4856-01 7 20685734 20685734 T A ABCB5 Silent p.P318P 0.04 TCGA-CZ-4856-01 7 6082561 6082561 T G EIF2AK1 Intron 0.18 TCGA-CZ-4856-01 8 118825167 118825167 T A EXT1 Missense_Mutation p.I556F 0.07 tolerated(0.05) probably_damaging(0.939) TCGA-CZ-4856-01 8 141559213 141559213 C T AGO2 Missense_Mutation p.A530T 0.12 deleterious(0.01) benign(0.055) TCGA-CZ-4856-01 8 144103076 144103076 G C LY6E Missense_Mutation p.G89A 0.18 tolerated(0.18) benign(0.248) TCGA-CZ-4856-01 8 144103077 144103077 C T LY6E Silent p.G89G 0.18 TCGA-CZ-4856-01 8 145998800 145998809 AGGCTTTCTT - ZNF34 Frame_Shift_Del p.K509Sfs*7 0.12 TCGA-CZ-4856-01 9 111849589 111849590 CC ACA TMEM245 Frame_Shift_Ins p.G395Cfs*44 0.09 TCGA-CZ-4856-01 9 35044086 35044086 C T C9orf131 Missense_Mutation p.P487L 0.17 tolerated(0.25) benign(0.003) TCGA-CZ-4856-01 X 101858509 101858509 A T ARMCX5 Silent p.A480A 0.08 TCGA-CZ-4856-01 X 101971084 101971084 C A GPRASP2 Silent p.S429S 0.22 TCGA-CZ-4856-01 X 135482053 135482053 A G GPR112 Missense_Mutation p.T2785A 0.04 tolerated(0.25) benign(0.013) TCGA-CZ-4856-01 X 80377172 80377172 C G HMGN5 Splice_Site 0.17 TCGA-CZ-4859-01 10 101373512 101373512 T G SLC25A28 Missense_Mutation p.K154T 0.37 tolerated(0.37) benign(0.405) TCGA-CZ-4859-01 10 105924008 105924008 T AC WDR96 Frame_Shift_Ins p.Y1031Lfs*2 0.33 TCGA-CZ-4859-01 10 49642940 49642940 C T MAPK8 Silent p.I384I 0.06 TCGA-CZ-4859-01 10 51584968 51584968 A C NCOA4 Missense_Mutation p.K372T 0.28 tolerated(0.06) possibly_damaging(0.71) TCGA-CZ-4859-01 10 95791726 95791726 A G PLCE1 Missense_Mutation p.D308G 0.38 tolerated_low_confidence(0.07) benign(0.029) TCGA-CZ-4859-01 11 129999984 129999984 G C APLP2 Missense_Mutation p.D503H 0.34 deleterious(0) probably_damaging(0.999) TCGA-CZ-4859-01 11 22707336 22707336 G C GAS2 Splice_Site p.X89_splice 0.40 TCGA-CZ-4859-01 11 28045366 28045366 C T KIF18A Missense_Mutation p.V846I 0.41 tolerated(0.49) benign(0.001) TCGA-CZ-4859-01 11 62348882 62348882 C G TUT1 Missense_Mutation p.E227Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-CZ-4859-01 11 89223701 89223701 A G NOX4 Silent p.N26N 0.40 TCGA-CZ-4859-01 12 105589090 105589090 G A APPL2 Missense_Mutation p.A403V 0.27 deleterious(0.02) possibly_damaging(0.905) TCGA-CZ-4859-01 12 112572550 112572550 A G TRAFD1 Missense_Mutation p.E19G 0.30 deleterious(0.01) possibly_damaging(0.813) TCGA-CZ-4859-01 12 122277538 122277538 C T HPD 3'UTR 0.22 TCGA-CZ-4859-01 12 57590881 57590881 T A LRP1 Nonsense_Mutation p.Y3003* 0.13 TCGA-CZ-4859-01 12 6979622 6979622 C T TPI1 3'UTR 0.45 TCGA-CZ-4859-01 13 108518168 108518168 G T FAM155A Silent p.T259T 0.13 TCGA-CZ-4859-01 13 114156172 114156173 - CTTCAGGA TMCO3 Frame_Shift_Ins p.N312Qfs*3 0.17 TCGA-CZ-4859-01 13 26978230 26978230 A G CDK8 3'UTR 0.40 TCGA-CZ-4859-01 13 28750663 28750663 C G PAN3 Missense_Mutation p.L196V 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.672) TCGA-CZ-4859-01 13 43652822 43652822 A T DNAJC15 Silent p.V103V 0.43 TCGA-CZ-4859-01 13 48830433 48830438 GAAGAA - ITM2B In_Frame_Del p.E125_E126del 0.31 TCGA-CZ-4859-01 14 64532268 64532268 C T SYNE2 Missense_Mutation p.S3444L 0.36 benign(0.009) TCGA-CZ-4859-01 14 64532269 64532269 G C SYNE2 Silent p.S3444S 0.35 TCGA-CZ-4859-01 14 71444679 71444679 T A PCNX Missense_Mutation p.V542D 0.30 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-CZ-4859-01 15 58257978 58257978 T A ALDH1A2 Missense_Mutation p.R282S 0.43 deleterious(0.02) probably_damaging(0.998) TCGA-CZ-4859-01 15 68457098 68457098 A G PIAS1 Missense_Mutation p.S322G 0.44 deleterious(0.02) possibly_damaging(0.708) TCGA-CZ-4859-01 15 75108801 75108801 G A LMAN1L Missense_Mutation p.G122S 0.14 tolerated(0.14) possibly_damaging(0.606) TCGA-CZ-4859-01 15 83932380 83932380 A G BNC1 Silent p.S541S 0.06 TCGA-CZ-4859-01 16 1825398 1825398 G T EME2 Nonsense_Mutation p.E218* 0.19 TCGA-CZ-4859-01 16 2134519 2134519 C G TSC2 Silent p.A1432A 0.42 TCGA-CZ-4859-01 16 71961673 71961673 A G IST1 Missense_Mutation p.D366G 0.26 deleterious(0.04) benign(0.26) TCGA-CZ-4859-01 17 263996 263996 C T C17orf97 3'UTR 0.07 TCGA-CZ-4859-01 17 26696549 26696549 C G VTN Missense_Mutation p.G170R 0.25 deleterious(0) probably_damaging(1) TCGA-CZ-4859-01 17 27287870 27287870 C T SEZ6 Silent p.R454R 0.42 TCGA-CZ-4859-01 17 30310113 30310113 T A SUZ12 Missense_Mutation p.L338H 0.42 tolerated(0.27) probably_damaging(0.999) TCGA-CZ-4859-01 17 30660470 30660470 A G C17orf75 Missense_Mutation p.L314P 0.11 deleterious(0.02) possibly_damaging(0.786) TCGA-CZ-4859-01 17 37871549 37871550 - C ERBB2 Frame_Shift_Ins p.N388Qfs*14 0.29 TCGA-CZ-4859-01 17 38079479 38079479 G T ORMDL3 Missense_Mutation p.P71H 0.30 deleterious(0) probably_damaging(1) TCGA-CZ-4859-01 17 3945851 3945851 A - ZZEF1 Frame_Shift_Del p.S2060Qfs*9 0.29 TCGA-CZ-4859-01 17 41341626 41341626 G A NBR1 Missense_Mutation p.E168K 0.39 deleterious(0) probably_damaging(0.988) TCGA-CZ-4859-01 17 44061288 44061288 A G MAPT Missense_Mutation p.Q373R 0.35 tolerated(0.37) benign(0.069) TCGA-CZ-4859-01 17 60129921 60129921 T C MED13 Silent p.K149K 0.27 TCGA-CZ-4859-01 17 77707422 77707422 G A ENPP7 Missense_Mutation p.V124M 0.45 tolerated(0.05) possibly_damaging(0.791) TCGA-CZ-4859-01 18 30091829 30091829 A T WBP11P1 RNA 0.14 TCGA-CZ-4859-01 18 76870367 76870367 G A ATP9B Nonsense_Mutation p.W102* 0.08 TCGA-CZ-4859-01 19 11456341 11456341 T C TMEM205 5'UTR 0.54 TCGA-CZ-4859-01 19 14083791 14083791 C G RFX1 Missense_Mutation p.V360L 0.35 deleterious(0.05) benign(0.374) TCGA-CZ-4859-01 19 2877284 2877284 G A ZNF556 Missense_Mutation p.V110M 0.11 deleterious(0.05) possibly_damaging(0.753) TCGA-CZ-4859-01 19 36303397 36303397 G T PRODH2 Missense_Mutation p.S155Y 0.44 deleterious(0) probably_damaging(0.984) TCGA-CZ-4859-01 19 55865784 55865784 A C COX6B2 Missense_Mutation p.F36V 0.07 deleterious(0) possibly_damaging(0.763) TCGA-CZ-4859-01 19 58512737 58512737 A C ZNF606 Intron 0.35 TCGA-CZ-4859-01 1 150444821 150444821 A G RPRD2 Missense_Mutation p.T1133A 0.27 tolerated_low_confidence(0.28) benign(0.001) TCGA-CZ-4859-01 1 152732829 152732829 C A KPRP Nonsense_Mutation p.C255* 0.55 TCGA-CZ-4859-01 1 154026805 154026807 TAT - NUP210L In_Frame_Del p.N1127del 0.36 TCGA-CZ-4859-01 1 16260312 16260312 A C SPEN Missense_Mutation p.D2526A 0.33 probably_damaging(0.997) TCGA-CZ-4859-01 1 171605694 171605694 G A MYOC Missense_Mutation p.R296C 0.25 deleterious(0) probably_damaging(0.997) TCGA-CZ-4859-01 1 183942768 183942768 C G COLGALT2 Missense_Mutation p.W203C 0.05 deleterious(0) probably_damaging(1) TCGA-CZ-4859-01 1 204380282 204380282 T C PPP1R15B Silent p.Q86Q 0.07 TCGA-CZ-4859-01 1 234536934 234536934 C T TARBP1 Missense_Mutation p.C1355Y 0.29 deleterious(0.02) possibly_damaging(0.825) TCGA-CZ-4859-01 1 235318310 235318311 TG - RBM34 Frame_Shift_Del p.T161Rfs*23 0.33 TCGA-CZ-4859-01 1 24485539 24485539 T C IFNLR1 Intron 0.32 TCGA-CZ-4859-01 1 47399695 47399695 A G CYP4A11 Missense_Mutation p.L382P 0.42 deleterious(0) probably_damaging(0.986) TCGA-CZ-4859-01 1 47761474 47761474 A T STIL Missense_Mutation p.S250T 0.05 deleterious(0.02) benign(0.238) TCGA-CZ-4859-01 1 65344794 65344794 A T JAK1 Nonsense_Mutation p.Y81* 0.11 TCGA-CZ-4859-01 1 6647268 6647280 TCCTCCTGCTCCC - ZBTB48 Frame_Shift_Del p.C383Sfs*11 0.40 TCGA-CZ-4859-01 1 94943864 94943864 G A ABCD3 Missense_Mutation p.G226E 0.31 deleterious(0) probably_damaging(1) TCGA-CZ-4859-01 20 10393730 10393730 T C MKKS Missense_Mutation p.S145G 0.41 tolerated(0.31) benign(0.17) TCGA-CZ-4859-01 20 13830874 13830874 T A SEL1L2 Missense_Mutation p.E524V 0.26 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-CZ-4859-01 20 32663747 32663747 C G RALY Missense_Mutation p.R149G 0.50 deleterious(0) probably_damaging(0.988) TCGA-CZ-4859-01 20 33329729 33329729 A G NCOA6 Missense_Mutation p.V1444A 0.32 benign(0.004) TCGA-CZ-4859-01 20 3673709 3673709 C T SIGLEC1 Missense_Mutation p.C1193Y 0.52 deleterious(0) probably_damaging(1) TCGA-CZ-4859-01 20 60971621 60971621 G A CABLES2 Silent p.S130S 0.28 TCGA-CZ-4859-01 21 37785583 37785583 C G CHAF1B Missense_Mutation p.T488R 0.24 deleterious(0) possibly_damaging(0.873) TCGA-CZ-4859-01 22 21331018 21331018 G T AIFM3 Missense_Mutation p.R370M 0.46 deleterious(0.03) benign(0.389) TCGA-CZ-4859-01 22 23501360 23501360 C G RAB36 Missense_Mutation p.A246G 0.29 tolerated(0.17) benign(0.012) TCGA-CZ-4859-01 22 41574358 41574358 C A EP300 Missense_Mutation p.Q2215K 0.42 benign(0.191) TCGA-CZ-4859-01 22 43036104 43036106 ACT - ATP5L2 In_Frame_Del p.S59del 0.31 TCGA-CZ-4859-01 2 111413453 111413453 G C BUB1 Missense_Mutation p.T580S 0.03 deleterious(0.01) benign(0.345) TCGA-CZ-4859-01 2 127961091 127961091 G C CYP27C1 Missense_Mutation p.P12R 0.49 deleterious(0) probably_damaging(1) TCGA-CZ-4859-01 2 141812795 141812796 CC - LRP1B Frame_Shift_Del p.G481Nfs*31 0.22 TCGA-CZ-4859-01 2 179434729 179434729 A C TTN Missense_Mutation p.F25377C 0.03 TCGA-CZ-4859-01 2 21225676 21225676 C T APOB Silent p.G4206G 0.52 TCGA-CZ-4859-01 2 27704017 27704017 G T IFT172 Missense_Mutation p.H227Q 0.65 tolerated(0.37) benign(0) TCGA-CZ-4859-01 2 44507853 44507853 A G SLC3A1 Splice_Site p.X144_splice 0.20 TCGA-CZ-4859-01 2 54045137 54045137 C T ERLEC1 3'UTR 0.27 TCGA-CZ-4859-01 2 74477471 74477471 T A SLC4A5 Missense_Mutation p.Q551L 0.54 tolerated(1) probably_damaging(0.999) TCGA-CZ-4859-01 2 98351754 98351754 C T ZAP70 Missense_Mutation p.T375M 0.06 deleterious(0.01) benign(0.359) TCGA-CZ-4859-01 2 99156037 99156037 T - INPP4A Frame_Shift_Del p.D239Efs*25 0.33 TCGA-CZ-4859-01 3 10188305 10188306 - AT VHL Frame_Shift_Ins p.T152Sfs*8 0.42 TCGA-CZ-4859-01 3 122133533 122133533 A T WDR5B Silent p.I281I 0.40 TCGA-CZ-4859-01 3 147114035 147114035 A G ZIC4 Missense_Mutation p.Y148H 0.48 tolerated(0.05) probably_damaging(0.979) TCGA-CZ-4859-01 3 170945979 170945979 G A TNIK Missense_Mutation p.A52V 0.13 deleterious(0) unknown(0) TCGA-CZ-4859-01 3 186299285 186299285 C T DNAJB11 Silent p.D194D 0.37 TCGA-CZ-4859-01 3 38647616 38647616 G T SCN5A Silent p.I388I 0.59 TCGA-CZ-4859-01 3 45637344 45637344 G C LIMD1 Missense_Mutation p.V325L 0.59 tolerated(0.29) benign(0.002) TCGA-CZ-4859-01 4 13338959 13338959 G A HSP90AB2P RNA 0.28 TCGA-CZ-4859-01 4 13338960 13338960 C T HSP90AB2P RNA 0.28 TCGA-CZ-4859-01 4 187535488 187535488 G A FAT1 Missense_Mutation p.S3029L 0.38 benign(0.2) TCGA-CZ-4859-01 4 57215942 57215942 T - AASDH Frame_Shift_Del p.T659Hfs*9 0.30 TCGA-CZ-4859-01 4 68780433 68780433 T C TMPRSS11A Missense_Mutation p.D326G 0.39 tolerated(0.33) benign(0.068) TCGA-CZ-4859-01 5 140798209 140798209 C T PCDHGB7 Silent p.I261I 0.33 TCGA-CZ-4859-01 5 140890569 140890569 C T PCDHGB6 Silent p.S874S 0.35 TCGA-CZ-4859-01 5 151166245 151166245 C T G3BP1 Silent p.L22L 0.29 TCGA-CZ-4859-01 5 169494626 169494626 T A DOCK2 Missense_Mutation p.L1527H 0.08 deleterious(0) probably_damaging(1) TCGA-CZ-4859-01 5 37379472 37379472 G A WDR70 Translation_Start_Site p.M1? 0.30 tolerated_low_confidence(0.14) benign(0.004) TCGA-CZ-4859-01 6 106987378 106987378 A G AIM1 Missense_Mutation p.I1199V 0.07 tolerated(0.41) probably_damaging(0.998) TCGA-CZ-4859-01 6 109477026 109477034 AATGTCTTC - CEP57L1 In_Frame_Del p.M231_S233del 0.45 TCGA-CZ-4859-01 6 110620348 110620348 C A METTL24 Missense_Mutation p.G188V 0.06 tolerated(0.06) probably_damaging(0.993) TCGA-CZ-4859-01 6 170116148 170116148 A - PHF10 Frame_Shift_Del p.L149* 0.10 TCGA-CZ-4859-01 6 33041247 33041247 C - HLA-DPA1 Splice_Site p.X34_splice 0.31 TCGA-CZ-4859-01 6 33246066 33246066 G T B3GALT4 Missense_Mutation p.E290D 0.27 deleterious(0) probably_damaging(0.999) TCGA-CZ-4859-01 6 57185282 57185282 T A PRIM2 Missense_Mutation p.V61E 0.31 deleterious(0) benign(0.126) TCGA-CZ-4859-01 6 76715159 76715159 G A IMPG1 Missense_Mutation p.S327F 0.35 tolerated(0.13) benign(0.272) TCGA-CZ-4859-01 7 141760115 141760115 G - MGAM Frame_Shift_Del p.W1355Cfs*9 0.17 TCGA-CZ-4859-01 7 141770916 141770916 A T MGAM Intron 0.36 TCGA-CZ-4859-01 7 15433778 15433778 T C AGMO Silent p.E212E 0.37 TCGA-CZ-4859-01 7 20739468 20739468 A G ABCB5 Silent p.K725K 0.27 TCGA-CZ-4859-01 7 44113448 44113448 T C POLM Silent p.R416R 0.35 TCGA-CZ-4859-01 7 48682951 48682951 G A ABCA13 Missense_Mutation p.D4969N 0.10 probably_damaging(0.981) TCGA-CZ-4859-01 7 87445570 87445570 G A RUNDC3B Missense_Mutation p.M423I 0.42 tolerated(0.4) benign(0) TCGA-CZ-4859-01 8 103663758 103663758 G A KLF10 Missense_Mutation p.P268S 0.05 tolerated(0.41) benign(0.026) TCGA-CZ-4859-01 9 100079370 100079371 - A CCDC180 Frame_Shift_Ins p.N318Kfs*48 0.30 TCGA-CZ-4859-01 9 88642645 88642645 T - GOLM1 3'UTR 0.22 TCGA-CZ-4859-01 9 95027315 95027315 G A IARS Silent p.S532S 0.33 TCGA-CZ-4859-01 9 96320221 96320221 A C FAM120A Missense_Mutation p.Y866S 0.22 deleterious(0.01) benign(0.275) TCGA-CZ-4859-01 X 104464107 104464107 A C TEX13A Missense_Mutation p.Y257D 0.27 deleterious(0.03) possibly_damaging(0.902) TCGA-CZ-4859-01 X 114384431 114384431 C T LRCH2 Missense_Mutation p.E552K 0.05 tolerated(0.08) possibly_damaging(0.585) TCGA-CZ-4859-01 X 118893385 118893385 G T SOWAHD Missense_Mutation p.G252V 0.22 tolerated(0.26) benign(0.004) TCGA-CZ-4859-01 X 122757968 122757968 T C THOC2 Silent p.Q1087Q 0.02 TCGA-CZ-4859-01 X 123184076 123184076 A C STAG2 Missense_Mutation p.I312L 0.19 tolerated(0.09) probably_damaging(0.921) TCGA-CZ-4859-01 X 123505313 123505313 A G SH2D1A 3'UTR 0.62 TCGA-CZ-4859-01 X 151909172 151909172 C A CSAG1 Silent p.P67P 0.26 TCGA-CZ-4859-01 X 153697209 153697209 A T PLXNA3 Missense_Mutation p.K1444M 0.05 deleterious(0) probably_damaging(0.999) TCGA-CZ-4859-01 X 65474914 65474914 G T HEPH Missense_Mutation p.R921S 0.03 tolerated(0.16) benign(0.082) TCGA-CZ-4859-01 X 7171308 7171308 A G STS Missense_Mutation p.N28S 0.05 deleterious(0.01) possibly_damaging(0.73) TCGA-CZ-4859-01 X 79948521 79948521 C T BRWD3 Missense_Mutation p.A1061T 0.53 deleterious(0) probably_damaging(0.997) TCGA-CZ-4863-01 10 126523420 126523420 T C FAM175B Silent p.D376D 0.13 TCGA-CZ-4863-01 10 6268194 6268194 A T PFKFB3 Missense_Mutation p.S461C 0.17 possibly_damaging(0.673) TCGA-CZ-4863-01 10 71903647 71903647 C G TYSND1 Missense_Mutation p.E416D 0.10 tolerated(0.08) benign(0.04) TCGA-CZ-4863-01 11 33667256 33667256 A G KIAA1549L Missense_Mutation p.T1515A 0.15 deleterious(0.03) possibly_damaging(0.903) TCGA-CZ-4863-01 11 62296732 62296732 C A AHNAK Missense_Mutation p.K1719N 0.18 possibly_damaging(0.607) TCGA-CZ-4863-01 12 25706102 25706102 C T IFLTD1 5'UTR 0.18 TCGA-CZ-4863-01 12 27075598 27075598 A G ASUN Silent p.D280D 0.15 TCGA-CZ-4863-01 12 31236843 31236855 ACTGGCCCCTTAC - DDX11 Frame_Shift_Del p.T81Mfs*46 0.09 TCGA-CZ-4863-01 13 103382892 103382914 CTGAAAGAACTTGAGTATCTTTC - CCDC168 Frame_Shift_Del p.K2083Vfs*24 0.15 TCGA-CZ-4863-01 15 28913498 28913498 T G HERC2P9 RNA 0.11 TCGA-CZ-4863-01 15 42050033 42050033 G - MGA Frame_Shift_Del p.R2396Qfs*8 0.14 TCGA-CZ-4863-01 15 49048532 49048532 G C CEP152 Missense_Mutation p.I971M 0.17 tolerated(0.07) possibly_damaging(0.691) TCGA-CZ-4863-01 15 79227327 79227327 T A CTSH Missense_Mutation p.K133I 0.17 deleterious(0) possibly_damaging(0.689) TCGA-CZ-4863-01 16 74524933 74524933 T A GLG1 Missense_Mutation p.E472V 0.16 tolerated(0.11) benign(0.037) TCGA-CZ-4863-01 16 84050801 84050801 C A SLC38A8 Silent p.R299R 0.11 TCGA-CZ-4863-01 17 19451355 19451355 G T SLC47A1 Missense_Mutation p.V122F 0.14 deleterious(0) possibly_damaging(0.519) TCGA-CZ-4863-01 17 2323260 2323260 G T METTL16 3'UTR 0.10 TCGA-CZ-4863-01 17 46148933 46148933 G A CBX1 Missense_Mutation p.S141F 0.19 deleterious(0) probably_damaging(0.985) TCGA-CZ-4863-01 17 56573389 56573389 A T MTMR4 Missense_Mutation p.L705H 0.11 tolerated_low_confidence(0.55) benign(0.345) TCGA-CZ-4863-01 18 10741026 10741026 T - PIEZO2 Intron 0.21 TCGA-CZ-4863-01 19 18856654 18856654 C T CRTC1 Silent p.L105L 0.19 TCGA-CZ-4863-01 19 30934483 30934483 G C ZNF536 Missense_Mutation p.S5T 0.25 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-CZ-4863-01 19 41497318 41497318 T C CYP2B6 Silent p.P36P 0.09 TCGA-CZ-4863-01 19 41726631 41726631 A G AXL Missense_Mutation p.Q59R 0.10 tolerated(0.42) benign(0.002) TCGA-CZ-4863-01 19 9046549 9046549 A G MUC16 Silent p.P11694P 0.14 TCGA-CZ-4863-01 1 100155420 100155420 C T PALMD Missense_Mutation p.S535F 0.16 deleterious(0) probably_damaging(0.914) TCGA-CZ-4863-01 1 116932958 116932958 C A ATP1A1 Missense_Mutation p.Q383K 0.24 deleterious(0) possibly_damaging(0.907) TCGA-CZ-4863-01 1 161206307 161206307 G - NR1I3 Frame_Shift_Del p.Q17Kfs*10 0.42 TCGA-CZ-4863-01 1 169437458 169437458 C - SLC19A2 Frame_Shift_Del p.R419Pfs*4 0.25 TCGA-CZ-4863-01 1 175348829 175348829 T C TNR Missense_Mutation p.T608A 0.24 tolerated(0.55) benign(0.001) TCGA-CZ-4863-01 1 186024557 186024557 C T HMCN1 Missense_Mutation p.P2299S 0.09 benign(0.388) TCGA-CZ-4863-01 1 29185486 29185486 C A OPRD1 Missense_Mutation p.A83D 0.12 deleterious(0) probably_damaging(0.934) TCGA-CZ-4863-01 1 40363317 40363317 A C MYCL Missense_Mutation p.S304R 0.20 tolerated(0.06) benign(0.042) TCGA-CZ-4863-01 1 46743788 46743788 C G RAD54L Missense_Mutation p.P693R 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-CZ-4863-01 1 52849596 52849596 T C ORC1 Missense_Mutation p.Q590R 0.23 deleterious(0.01) benign(0.411) TCGA-CZ-4863-01 1 74954920 74954920 C G TNNI3K Silent p.L824L 0.15 TCGA-CZ-4863-01 1 89271212 89271212 A G PKN2 Missense_Mutation p.I512V 0.16 tolerated(0.18) benign(0.094) TCGA-CZ-4863-01 20 61596978 61596978 T C SLC17A9 Missense_Mutation p.L321P 0.15 deleterious(0.02) probably_damaging(0.956) TCGA-CZ-4863-01 2 160721395 160721395 C - LY75-CD302 Frame_Shift_Del p.S719Afs*59 0.18 TCGA-CZ-4863-01 2 167992508 167992508 G C XIRP2 Missense_Mutation p.K166N 0.18 benign(0.067) TCGA-CZ-4863-01 2 196545001 196545001 T - SLC39A10 Frame_Shift_Del p.F80Lfs*7 0.18 TCGA-CZ-4863-01 2 220101846 220101846 A G GLB1L Missense_Mutation p.L638P 0.14 tolerated_low_confidence(0.08) possibly_damaging(0.873) TCGA-CZ-4863-01 2 220413931 220413931 A T TMEM198 Missense_Mutation p.D267V 0.21 tolerated(0.24) benign(0) TCGA-CZ-4863-01 2 220413932 220413932 T G TMEM198 Missense_Mutation p.D267E 0.19 tolerated(1) benign(0) TCGA-CZ-4863-01 2 84660489 84660489 C T SUCLG1 Silent p.Q220Q 0.17 TCGA-CZ-4863-01 3 130098768 130098768 C T COL6A5 Missense_Mutation p.T392I 0.24 tolerated(0.12) benign(0.067) TCGA-CZ-4863-01 3 51897084 51897084 C A IQCF2 Missense_Mutation p.H65N 0.19 deleterious(0) probably_damaging(0.972) TCGA-CZ-4863-01 4 187629281 187629281 A C FAT1 Silent p.P567P 0.16 TCGA-CZ-4863-01 4 39083717 39083717 C G KLHL5 Missense_Mutation p.R326G 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-CZ-4863-01 5 118502425 118502425 A G DMXL1 Silent p.E1695E 0.12 TCGA-CZ-4863-01 5 176297519 176297519 T C UNC5A Silent p.S290S 0.17 TCGA-CZ-4863-01 5 5242262 5242262 T A ADAMTS16 Missense_Mutation p.W874R 0.26 deleterious(0) probably_damaging(1) TCGA-CZ-4863-01 6 24718798 24718798 C - C6orf62 Frame_Shift_Del p.M34Cfs*26 0.13 TCGA-CZ-4863-01 6 46133254 46133254 A G ENPP5 Silent p.N292N 0.17 TCGA-CZ-4863-01 7 135433271 135433271 A T FAM180A Missense_Mutation p.C20S 0.20 tolerated(0.52) benign(0) TCGA-CZ-4863-01 7 135433272 135433272 C A FAM180A Missense_Mutation p.M19I 0.20 tolerated(0.24) benign(0) TCGA-CZ-4863-01 7 156761876 156761876 T G NOM1 Missense_Mutation p.S798R 0.19 tolerated(0.48) benign(0.017) TCGA-CZ-4863-01 7 48314125 48314125 C G ABCA13 Nonsense_Mutation p.S1621* 0.05 TCGA-CZ-4863-01 9 131083994 131083994 T C TRUB2 Missense_Mutation p.K42R 0.12 tolerated(0.34) benign(0.009) TCGA-CZ-4863-01 X 100105317 100105317 A T NOX1 Missense_Mutation p.M319K 0.30 deleterious(0) probably_damaging(0.999) TCGA-CZ-4863-01 X 152713268 152713268 C T TREX2 5'UTR 0.07 TCGA-CZ-4863-01 X 55041341 55041341 T C ALAS2 Missense_Mutation p.M426V 0.08 tolerated(0.24) possibly_damaging(0.688) TCGA-CZ-4864-01 10 121556995 121556995 A T INPP5F Silent p.G297G 0.30 TCGA-CZ-4864-01 10 127344492 127344492 C - TEX36 Frame_Shift_Del p.V180Lfs*27 0.26 TCGA-CZ-4864-01 10 51077587 51077587 C T PARG Missense_Mutation p.R183H 0.11 tolerated(0.53) benign(0.056) TCGA-CZ-4864-01 10 5807946 5807946 T - GDI2 3'UTR 0.21 TCGA-CZ-4864-01 11 103175343 103175343 A G DYNC2H1 Missense_Mutation p.Q3766R 0.28 probably_damaging(0.916) TCGA-CZ-4864-01 11 130784709 130784709 G C SNX19 Missense_Mutation p.P376A 0.28 deleterious(0.01) possibly_damaging(0.847) TCGA-CZ-4864-01 11 26719950 26719950 T C SLC5A12 Intron 0.32 TCGA-CZ-4864-01 11 44228422 44228422 T A EXT2 Silent p.P558P 0.33 TCGA-CZ-4864-01 11 55371657 55371657 A C OR4C11 Missense_Mutation p.S65A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-CZ-4864-01 11 5905873 5905873 G A OR52E4 Silent p.L117L 0.33 TCGA-CZ-4864-01 11 62761274 62761274 G C SLC22A8 Silent p.L431L 0.32 TCGA-CZ-4864-01 11 63487727 63487727 G C RTN3 Missense_Mutation p.V585L 0.32 tolerated(0.09) benign(0.232) TCGA-CZ-4864-01 11 89431804 89431804 G T FOLH1B RNA 0.31 TCGA-CZ-4864-01 11 9983559 9983559 A G SBF2 Missense_Mutation p.I602T 0.31 deleterious(0.05) benign(0.069) TCGA-CZ-4864-01 12 112605164 112605164 T C HECTD4 Missense_Mutation p.E4018G 0.08 probably_damaging(0.944) TCGA-CZ-4864-01 12 118627653 118627653 G C TAOK3 Missense_Mutation p.R430G 0.27 tolerated(0.07) benign(0.004) TCGA-CZ-4864-01 12 6967700 6967700 C A USP5 Missense_Mutation p.T326K 0.34 deleterious(0) probably_damaging(0.997) TCGA-CZ-4864-01 12 96674286 96674286 C T CDK17 Intron 0.15 TCGA-CZ-4864-01 13 29600924 29600924 G A MTUS2 Missense_Mutation p.E707K 0.24 deleterious(0) probably_damaging(0.998) TCGA-CZ-4864-01 13 99896782 99896782 G A UBAC2 Missense_Mutation p.G98D 0.30 deleterious(0) benign(0.222) TCGA-CZ-4864-01 14 69993978 69993978 A G PLEKHD1 Missense_Mutation p.Q377R 0.09 tolerated(0.35) benign(0.175) TCGA-CZ-4864-01 15 21071316 21071316 G A POTEB2 Missense_Mutation p.R99C 0.10 deleterious(0.03) benign(0.013) TCGA-CZ-4864-01 15 39880784 39880784 G T THBS1 Missense_Mutation p.G510V 0.41 deleterious(0.03) probably_damaging(0.975) TCGA-CZ-4864-01 15 41625193 41625193 A C NUSAP1 Missense_Mutation p.K13T 0.22 deleterious(0) probably_damaging(1) TCGA-CZ-4864-01 15 41625202 41625202 A C NUSAP1 Missense_Mutation p.D16A 0.21 deleterious(0) probably_damaging(0.987) TCGA-CZ-4864-01 15 43815755 43815755 G C MAP1A Missense_Mutation p.S695T 0.24 benign(0.047) TCGA-CZ-4864-01 15 54825218 54825218 G C UNC13C Missense_Mutation p.D1884H 0.24 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-CZ-4864-01 15 78456043 78456057 ATGTATTCCTTGTAG - IDH3A Splice_Site p.X239_splice 0.20 TCGA-CZ-4864-01 16 21652656 21652656 G T IGSF6 3'UTR 0.11 TCGA-CZ-4864-01 16 23364267 23364267 A - SCNN1B Frame_Shift_Del p.I153Lfs*22 0.24 TCGA-CZ-4864-01 16 68373467 68373467 G A PRMT7 Splice_Site p.X249_splice 0.44 TCGA-CZ-4864-01 16 70575603 70575604 - AT SF3B3 Frame_Shift_Ins p.D368Mfs*46 0.25 TCGA-CZ-4864-01 17 17920045 17920045 A G LRRC48 3'UTR 0.09 TCGA-CZ-4864-01 17 45821682 45821682 C T TBX21 Missense_Mutation p.T297I 0.36 deleterious(0) probably_damaging(0.999) TCGA-CZ-4864-01 17 4800542 4800542 A C MINK1 Missense_Mutation p.Y1320S 0.30 deleterious(0) probably_damaging(0.991) TCGA-CZ-4864-01 17 59161835 59161835 C G BCAS3 Missense_Mutation p.P794A 0.30 tolerated(0.07) probably_damaging(0.998) TCGA-CZ-4864-01 17 74008117 74008117 G A EVPL Silent p.H809H 0.25 TCGA-CZ-4864-01 17 74464802 74464802 C A AANAT Missense_Mutation p.R37S 0.10 tolerated_low_confidence(0.14) benign(0.001) TCGA-CZ-4864-01 17 77758159 77758159 G T CBX2 Missense_Mutation p.S306I 0.33 deleterious(0.05) possibly_damaging(0.453) TCGA-CZ-4864-01 19 14521868 14521868 C G DDX39A Missense_Mutation p.R182S 0.34 deleterious(0.04) benign(0.016) TCGA-CZ-4864-01 19 3121189 3121189 C A GNA11 3'UTR 0.44 TCGA-CZ-4864-01 19 33076745 33076745 C A PDCD5 Missense_Mutation p.P64T 0.25 deleterious(0) probably_damaging(0.955) TCGA-CZ-4864-01 19 4333792 4333792 C T STAP2 Missense_Mutation p.G66R 0.22 tolerated(0.71) benign(0.007) TCGA-CZ-4864-01 19 51466604 51466604 G A KLK6 Silent p.A133A 0.25 TCGA-CZ-4864-01 19 5720792 5720792 G T CATSPERD Missense_Mutation p.R15L 0.25 tolerated(0.67) benign(0.017) TCGA-CZ-4864-01 1 116670842 116670842 T G MAB21L3 Missense_Mutation p.L246R 0.29 deleterious(0) possibly_damaging(0.892) TCGA-CZ-4864-01 1 156021580 156021580 C G UBQLN4 Missense_Mutation p.K59N 0.25 deleterious(0) unknown(0) TCGA-CZ-4864-01 1 156040223 156040223 C A RAB25 3'UTR 0.56 TCGA-CZ-4864-01 1 158735809 158735809 T A OR6N1 Missense_Mutation p.I222F 0.35 deleterious(0.01) possibly_damaging(0.756) TCGA-CZ-4864-01 1 247053267 247053267 C A AHCTF1 Splice_Site p.X724_splice 0.32 TCGA-CZ-4864-01 1 249208022 249208022 G A PGBD2 5'UTR 0.28 TCGA-CZ-4864-01 20 10393742 10393742 G T MKKS Missense_Mutation p.P141T 0.29 deleterious(0.03) benign(0.156) TCGA-CZ-4864-01 20 31592110 31592110 C T SUN5 Missense_Mutation p.A13T 0.30 tolerated_low_confidence(0.59) benign(0.003) TCGA-CZ-4864-01 20 62172161 62172161 A G PTK6 5'Flank 0.11 TCGA-CZ-4864-01 20 62505087 62505087 A - TPD52L2 Frame_Shift_Del p.K78Rfs*12 0.28 TCGA-CZ-4864-01 21 38877681 38877681 G A DYRK1A Silent p.T445T 0.34 TCGA-CZ-4864-01 21 46066408 46066408 C T KRTAP10-11 Silent p.S11S 0.29 TCGA-CZ-4864-01 21 47542419 47542419 G C COL6A2 Missense_Mutation p.G528R 0.34 deleterious(0) possibly_damaging(0.794) TCGA-CZ-4864-01 22 18347570 18347570 A C MICAL3 Intron 0.28 TCGA-CZ-4864-01 22 37326791 37326791 C T CSF2RB Missense_Mutation p.P311S 0.29 tolerated(0.48) benign(0.016) TCGA-CZ-4864-01 22 41763548 41763548 T C TEF Silent p.P4P 0.28 TCGA-CZ-4864-01 22 45785755 45785755 C A SMC1B Missense_Mutation p.C523F 0.28 deleterious(0) probably_damaging(1) TCGA-CZ-4864-01 2 10101182 10101182 A G GRHL1 Missense_Mutation p.I96V 0.35 tolerated(0.35) benign(0) TCGA-CZ-4864-01 2 189869064 189869064 G A COL3A1 Missense_Mutation p.G969R 0.29 probably_damaging(1) TCGA-CZ-4864-01 2 210685095 210685095 G A UNC80 Missense_Mutation p.V675M 0.27 probably_damaging(0.991) TCGA-CZ-4864-01 2 242007185 242007185 G A SNED1 Missense_Mutation p.R1006H 0.19 tolerated(0.15) benign(0.26) TCGA-CZ-4864-01 2 69002505 69002506 GC - ARHGAP25 Frame_Shift_Del p.Q73Afs*8 0.32 TCGA-CZ-4864-01 3 107941126 107941126 T G IFT57 Missense_Mutation p.D15A 0.47 deleterious_low_confidence(0.01) benign(0.123) TCGA-CZ-4864-01 3 126741610 126741610 A T PLXNA1 Silent p.A1437A 0.43 TCGA-CZ-4864-01 3 52324509 52324509 C T GLYCTK Missense_Mutation p.P51S 0.56 deleterious(0) probably_damaging(0.996) TCGA-CZ-4864-01 3 52442029 52442029 T A BAP1 Missense_Mutation p.D107V 0.52 tolerated(0.09) possibly_damaging(0.58) TCGA-CZ-4864-01 4 159606297 159606297 C T ETFDH Missense_Mutation p.H178Y 0.27 deleterious(0.01) benign(0.441) TCGA-CZ-4864-01 4 62453094 62453094 G C LPHN3 Missense_Mutation p.D69H 0.34 tolerated(0.1) probably_damaging(1) TCGA-CZ-4864-01 5 130694992 130694992 A C CDC42SE2 5'UTR 0.55 TCGA-CZ-4864-01 5 138700323 138700323 A G PAIP2 Missense_Mutation p.E70G 0.45 deleterious(0.01) benign(0.013) TCGA-CZ-4864-01 5 140724710 140724710 C T PCDHGA3 Silent p.D370D 0.20 TCGA-CZ-4864-01 5 148389865 148389865 G T SH3TC2 Missense_Mutation p.R1099S 0.27 deleterious(0.01) probably_damaging(0.965) TCGA-CZ-4864-01 5 176309033 176309033 C T HK3 Missense_Mutation p.A717T 0.43 deleterious(0) probably_damaging(1) TCGA-CZ-4864-01 5 176637041 176637041 C T NSD1 Silent p.A547A 0.21 TCGA-CZ-4864-01 5 33462080 33462080 T A TARS Missense_Mutation p.L600M 0.25 deleterious(0.05) possibly_damaging(0.762) TCGA-CZ-4864-01 5 43293040 43293040 C A HMGCS1 Missense_Mutation p.D407Y 0.35 tolerated(0.12) benign(0.302) TCGA-CZ-4864-01 6 123102383 123102383 C A FABP7 Intron 0.30 TCGA-CZ-4864-01 6 137323406 137323406 C G IL20RA Silent p.S317S 0.38 TCGA-CZ-4864-01 6 149826443 149826443 A C PPIL4 3'UTR 0.52 TCGA-CZ-4864-01 6 30918716 30918717 - A DPCR1 Frame_Shift_Ins p.R826Kfs*7 0.25 TCGA-CZ-4864-01 6 41753242 41753242 A T PRICKLE4 Silent p.A182A 0.30 TCGA-CZ-4864-01 6 56506878 56506878 C T DST Missense_Mutation p.G95R 0.31 probably_damaging(1) TCGA-CZ-4864-01 6 89888482 89888482 C A GABRR1 3'UTR 0.32 TCGA-CZ-4864-01 7 132169750 132169750 C A PLXNA4 Intron 0.28 TCGA-CZ-4864-01 7 141408627 141408627 G C WEE2 Missense_Mutation p.E23D 0.30 tolerated(0.11) possibly_damaging(0.772) TCGA-CZ-4864-01 7 98452887 98452887 G A TMEM130 Missense_Mutation p.T260I 0.26 tolerated(0.06) benign(0.037) TCGA-CZ-4864-01 7 99103663 99103663 T C ZKSCAN5 5'UTR 0.25 TCGA-CZ-4864-01 7 99918665 99918665 G A SPDYE3 3'UTR 0.29 TCGA-CZ-4864-01 8 10285675 10285675 C G MSRA Silent p.G187G 0.19 TCGA-CZ-4864-01 8 10396263 10396263 G A PRSS55 Missense_Mutation p.C340Y 0.13 tolerated(0.36) benign(0.008) TCGA-CZ-4864-01 8 134050653 134050653 G - SLA 3'UTR 0.26 TCGA-CZ-4864-01 8 144942189 144942189 G A EPPK1 Missense_Mutation p.R1745C 0.38 probably_damaging(0.997) TCGA-CZ-4864-01 8 145732196 145732196 T C GPT Missense_Mutation p.F457S 0.20 deleterious(0) probably_damaging(1) TCGA-CZ-4864-01 8 27098691 27098691 G A STMN4 Silent p.V93V 0.31 TCGA-CZ-4864-01 8 3165343 3165343 G A CSMD1 Missense_Mutation p.A1275V 0.06 benign(0.121) TCGA-CZ-4864-01 8 99560202 99560202 A G STK3 Missense_Mutation p.M407T 0.24 tolerated(0.09) benign(0.285) TCGA-CZ-4864-01 9 116270830 116270830 C T RGS3 Missense_Mutation p.P483S 0.24 deleterious(0.03) probably_damaging(0.987) TCGA-CZ-4864-01 9 138667187 138667187 T C KCNT1 Missense_Mutation p.Y759H 0.33 deleterious(0.01) benign(0.172) TCGA-CZ-4864-01 9 6256104 6256104 T C IL33 Missense_Mutation p.I250T 0.26 deleterious(0) probably_damaging(0.986) TCGA-CZ-4864-01 X 119670803 119670803 C A CUL4B Missense_Mutation p.M693I 0.62 tolerated(0.1) benign(0.012) TCGA-CZ-4865-01 10 104414874 104414874 A G TRIM8 Missense_Mutation p.Q235R 0.12 tolerated(0.08) benign(0.329) TCGA-CZ-4865-01 10 74992694 74992694 T C FAM149B1 Intron 0.19 TCGA-CZ-4865-01 10 7627983 7627983 C T ITIH5 Missense_Mutation p.R330H 0.20 tolerated(1) benign(0.004) TCGA-CZ-4865-01 10 91497621 91497621 A G KIF20B Missense_Mutation p.N968S 0.21 tolerated(0.17) benign(0.005) TCGA-CZ-4865-01 10 95791806 95791806 G T PLCE1 Nonsense_Mutation p.E335* 0.19 TCGA-CZ-4865-01 11 105967561 105967561 C T AASDHPPT Missense_Mutation p.P286L 0.23 tolerated(0.23) benign(0.013) TCGA-CZ-4865-01 11 117302317 117302317 C T DSCAML1 Silent p.V1829V 0.07 TCGA-CZ-4865-01 11 118375051 118375051 C A KMT2A Missense_Mutation p.T2815K 0.21 benign(0.114) TCGA-CZ-4865-01 11 118498266 118498266 T A PHLDB1 Missense_Mutation p.S243T 0.11 deleterious(0.01) possibly_damaging(0.665) TCGA-CZ-4865-01 11 118498267 118498267 C T PHLDB1 Missense_Mutation p.S243F 0.10 deleterious(0) possibly_damaging(0.835) TCGA-CZ-4865-01 11 58207098 58207098 A T OR5B12 Missense_Mutation p.F176Y 0.22 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-CZ-4865-01 11 61135391 61135391 T A TMEM138 Intron 0.21 TCGA-CZ-4865-01 12 112130608 112130608 A G ACAD10 Missense_Mutation p.H32R 0.17 tolerated_low_confidence(0.35) benign(0.002) TCGA-CZ-4865-01 12 54856986 54856986 A G GTSF1 Silent p.C71C 0.22 TCGA-CZ-4865-01 12 56360850 56360850 A G CDK2 Missense_Mutation p.K20E 0.18 deleterious(0) probably_damaging(1) TCGA-CZ-4865-01 12 69764713 69764714 TC A YEATS4 Frame_Shift_Del p.S158Ifs*4 0.17 TCGA-CZ-4865-01 13 113158951 113158951 T C TUBGCP3 Missense_Mutation p.I722V 0.17 tolerated(0.07) benign(0.026) TCGA-CZ-4865-01 13 47409628 47409628 A G HTR2A Missense_Mutation p.Y254H 0.27 deleterious(0) probably_damaging(0.994) TCGA-CZ-4865-01 14 38296432 38296432 G A TTC6 Missense_Mutation p.R1720H 0.03 tolerated(0.1) possibly_damaging(0.837) TCGA-CZ-4865-01 14 61518635 61518635 T C SLC38A6 Missense_Mutation p.V394A 0.20 deleterious(0) possibly_damaging(0.769) TCGA-CZ-4865-01 14 67746078 67746078 A - MPP5 Frame_Shift_Del p.E64Gfs*3 0.20 TCGA-CZ-4865-01 14 99969172 99969172 G C CCNK Missense_Mutation p.V288L 0.19 tolerated(0.33) unknown(0) TCGA-CZ-4865-01 15 101110153 101110153 C G LINS Missense_Mutation p.E522Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-CZ-4865-01 15 35082575 35082575 T C ACTC1 3'UTR 0.16 TCGA-CZ-4865-01 15 67496448 67496448 G A AAGAB Missense_Mutation p.L252F 0.18 deleterious(0) probably_damaging(1) TCGA-CZ-4865-01 15 75134635 75134635 G C ULK3 Missense_Mutation p.L77V 0.17 deleterious(0) probably_damaging(0.987) TCGA-CZ-4865-01 15 90128974 90128974 C T TICRR Silent p.P404P 0.23 TCGA-CZ-4865-01 16 21261969 21261969 T C ANKS4B Missense_Mutation p.L361P 0.15 deleterious(0.01) probably_damaging(0.921) TCGA-CZ-4865-01 16 70934972 70934972 A T HYDIN Missense_Mutation p.Y2995N 0.05 probably_damaging(0.934) TCGA-CZ-4865-01 16 81398605 81398605 G T GAN Missense_Mutation p.K421N 0.19 deleterious(0) probably_damaging(0.985) TCGA-CZ-4865-01 16 84228327 84228327 G A ADAD2 Intron 0.22 TCGA-CZ-4865-01 17 10435069 10435069 C A MYH2 Nonsense_Mutation p.E860* 0.16 TCGA-CZ-4865-01 17 17248196 17248196 T C NT5M Missense_Mutation p.L173P 0.22 deleterious(0) probably_damaging(0.998) TCGA-CZ-4865-01 17 41368531 41368531 G A TMEM106A Missense_Mutation p.V165I 0.23 tolerated(0.08) benign(0.2) TCGA-CZ-4865-01 17 48741447 48741447 T G ABCC3 Missense_Mutation p.I438S 0.17 tolerated(0.12) benign(0.014) TCGA-CZ-4865-01 17 71248830 71248830 T C CPSF4L Missense_Mutation p.I146V 0.24 tolerated(1) benign(0.001) TCGA-CZ-4865-01 17 7577559 7577559 G C TP53 Missense_Mutation p.S241C 0.08 deleterious(0) probably_damaging(1) TCGA-CZ-4865-01 17 78110034 78110034 T C EIF4A3 Missense_Mutation p.I362V 0.20 tolerated(0.06) possibly_damaging(0.78) TCGA-CZ-4865-01 17 8730539 8730539 G T PIK3R6 Missense_Mutation p.Q489K 0.29 tolerated(0.07) benign(0.047) TCGA-CZ-4865-01 18 2608738 2608738 G C NDC80 Missense_Mutation p.E533Q 0.20 deleterious(0.03) benign(0.141) TCGA-CZ-4865-01 18 5428360 5428360 C T EPB41L3 Silent p.K339K 0.16 TCGA-CZ-4865-01 18 65178132 65178132 C A DSEL 3'UTR 0.21 TCGA-CZ-4865-01 19 42566909 42566909 C A GRIK5 Splice_Site p.X114_splice 0.15 TCGA-CZ-4865-01 19 53994380 53994380 T C ZNF813 Silent p.P298P 0.06 TCGA-CZ-4865-01 19 9236856 9236856 C T OR7G3 Silent p.G257G 0.18 TCGA-CZ-4865-01 1 151236485 151236485 C T PSMD4 Missense_Mutation p.T88M 0.19 deleterious(0.02) benign(0.36) TCGA-CZ-4865-01 1 157557663 157557663 T C FCRL4 Missense_Mutation p.K185R 0.18 tolerated(0.34) benign(0.038) TCGA-CZ-4865-01 1 16254657 16254658 CT - SPEN Frame_Shift_Del p.T641Ifs*3 0.19 TCGA-CZ-4865-01 1 16255323 16255323 A C SPEN Missense_Mutation p.D863A 0.21 probably_damaging(0.997) TCGA-CZ-4865-01 1 165859456 165859456 A T UCK2 Nonsense_Mutation p.K39* 0.25 TCGA-CZ-4865-01 1 166891956 166891956 G A ILDR2 Missense_Mutation p.P362L 0.21 deleterious(0) possibly_damaging(0.844) TCGA-CZ-4865-01 1 182849640 182849640 G A DHX9 Missense_Mutation p.A841T 0.21 deleterious(0.02) possibly_damaging(0.739) TCGA-CZ-4865-01 1 235884146 235884146 A G LYST Silent p.Y3125Y 0.17 TCGA-CZ-4865-01 1 24383796 24383796 C A MYOM3 3'UTR 0.24 TCGA-CZ-4865-01 1 28660959 28660959 C T MED18 Silent p.L35L 0.18 TCGA-CZ-4865-01 1 31766074 31766074 C T SNRNP40 Missense_Mutation p.R88Q 0.11 tolerated(0.17) probably_damaging(0.985) TCGA-CZ-4865-01 1 64643844 64643844 A G ROR1 Missense_Mutation p.K707R 0.05 deleterious(0.03) possibly_damaging(0.811) TCGA-CZ-4865-01 1 86591606 86591606 A G COL24A1 Missense_Mutation p.L138P 0.24 deleterious(0.01) probably_damaging(1) TCGA-CZ-4865-01 1 89597806 89597806 G A GBP7 3'UTR 0.21 TCGA-CZ-4865-01 20 20006327 20006327 A C NAA20 Missense_Mutation p.I29L 0.16 tolerated(0.79) benign(0.002) TCGA-CZ-4865-01 20 34053567 34053567 G C CEP250 Splice_Site p.X82_splice 0.18 TCGA-CZ-4865-01 20 40081561 40081561 G T CHD6 Missense_Mutation p.P1048T 0.17 deleterious(0) probably_damaging(0.997) TCGA-CZ-4865-01 20 60708449 60708449 G A LSM14B Missense_Mutation p.G364R 0.26 deleterious(0.05) probably_damaging(1) TCGA-CZ-4865-01 20 60708460 60708460 C A LSM14B Silent p.G367G 0.23 TCGA-CZ-4865-01 21 17246743 17246743 C T USP25 Silent p.F899F 0.20 TCGA-CZ-4865-01 21 33949217 33949217 A G TCP10L Missense_Mutation p.I172T 0.21 tolerated(0.69) benign(0.002) TCGA-CZ-4865-01 22 25007113 25007113 T C GGT1 Missense_Mutation p.L22P 0.24 deleterious(0) benign(0.184) TCGA-CZ-4865-01 22 50962069 50962069 T C SCO2 Missense_Mutation p.M258V 0.16 deleterious(0.01) benign(0.137) TCGA-CZ-4865-01 2 201371733 201371733 C G KCTD18 Missense_Mutation p.G3R 0.20 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-CZ-4865-01 2 201775899 201775899 C A ORC2 3'UTR 0.28 TCGA-CZ-4865-01 2 55195335 55195335 T A EML6 Missense_Mutation p.V1890E 0.24 deleterious(0.01) probably_damaging(0.964) TCGA-CZ-4865-01 2 61009865 61009865 T C PAPOLG Missense_Mutation p.S358P 0.22 tolerated(0.2) benign(0.026) TCGA-CZ-4865-01 2 62728623 62728623 C G TMEM17 Splice_Site p.X107_splice 0.25 TCGA-CZ-4865-01 2 95719328 95719328 C T MAL 3'UTR 0.30 TCGA-CZ-4865-01 3 124536468 124536468 A G ITGB5 Silent p.N376N 0.17 TCGA-CZ-4865-01 3 135789339 135789339 C A PPP2R3A Missense_Mutation p.P830H 0.21 deleterious(0) probably_damaging(1) TCGA-CZ-4865-01 3 150845653 150845653 A T MED12L Missense_Mutation p.L146F 0.19 deleterious(0) probably_damaging(0.99) TCGA-CZ-4865-01 3 186334286 186334286 G T AHSG Missense_Mutation p.V127L 0.20 deleterious(0) probably_damaging(0.979) TCGA-CZ-4865-01 4 155157548 155157548 A - DCHS2 Frame_Shift_Del p.F2297Lfs*40 0.19 TCGA-CZ-4865-01 4 70361487 70361487 T C UGT2B4 Silent p.T31T 0.19 TCGA-CZ-4865-01 4 76572287 76572287 G A G3BP2 Missense_Mutation p.P328L 0.19 deleterious(0) probably_damaging(0.999) TCGA-CZ-4865-01 4 96123888 96123888 G C UNC5C Silent p.A710A 0.17 TCGA-CZ-4865-01 5 115350147 115350147 G A AQPEP Silent p.A791A 0.20 TCGA-CZ-4865-01 5 115840659 115840659 C A SEMA6A 5'UTR 0.04 TCGA-CZ-4865-01 5 54326407 54326407 G A GZMK Missense_Mutation p.V120I 0.14 tolerated(0.26) benign(0.014) TCGA-CZ-4865-01 5 94988732 94988732 C T RFESD Intron 0.09 TCGA-CZ-4865-01 6 117083156 117083156 A G FAM162B Missense_Mutation p.I125T 0.18 deleterious(0.02) possibly_damaging(0.705) TCGA-CZ-4865-01 6 151670340 151670340 A - AKAP12 Frame_Shift_Del p.K272Nfs*17 0.17 TCGA-CZ-4865-01 6 151789551 151789551 T C C6orf211 Missense_Mutation p.L211P 0.18 deleterious(0) benign(0.05) TCGA-CZ-4865-01 6 161134106 161134106 A T PLG Missense_Mutation p.T166S 0.16 deleterious(0) probably_damaging(0.999) TCGA-CZ-4865-01 6 24843341 24843341 C G FAM65B Missense_Mutation p.D557H 0.20 tolerated(0.07) probably_damaging(1) TCGA-CZ-4865-01 6 51609213 51609213 C A PKHD1 Missense_Mutation p.A3376S 0.25 tolerated(0.42) benign(0.025) TCGA-CZ-4865-01 6 6591390 6591390 C A LY86 Intron 0.22 TCGA-CZ-4865-01 6 80746291 80746291 C A TTK Missense_Mutation p.T675K 0.20 tolerated(0.18) benign(0.021) TCGA-CZ-4865-01 7 158457439 158457439 A - NCAPG2 Frame_Shift_Del p.W495Gfs*25 0.14 TCGA-CZ-4865-01 7 23827642 23827642 C G STK31 Missense_Mutation p.T844R 0.17 deleterious(0) probably_damaging(0.992) TCGA-CZ-4865-01 7 37953984 37953984 G C SFRP4 Missense_Mutation p.L173V 0.19 tolerated(0.51) benign(0.051) TCGA-CZ-4865-01 7 4008962 4008962 C A SDK1 Silent p.I540I 0.25 TCGA-CZ-4865-01 7 43351595 43351595 C A HECW1 Nonsense_Mutation p.Y87* 0.21 TCGA-CZ-4865-01 8 33246865 33246865 A G FUT10 Silent p.F276F 0.24 TCGA-CZ-4865-01 8 74858870 74858870 A - TCEB1 Frame_Shift_Del p.C112Vfs*3 0.21 TCGA-CZ-4865-01 9 112924391 112924391 G T PALM2-AKAP2 Silent p.L1064L 0.18 TCGA-CZ-4865-01 X 135431622 135431622 G C GPR112 Missense_Mutation p.L1919F 0.33 deleterious(0.02) probably_damaging(0.97) TCGA-CZ-4865-01 X 154294265 154294265 C T MTCP1 Silent p.G7G 0.18 TCGA-CZ-4865-01 X 17092279 17092279 C G REPS2 Missense_Mutation p.S459C 0.21 deleterious(0.02) probably_damaging(0.984) TCGA-CZ-4865-01 X 36007638 36007638 A G CXorf22 Missense_Mutation p.I972M 0.03 tolerated_low_confidence(0.11) benign(0.015) TCGA-CZ-4865-01 X 45016973 45016973 G A CXorf36 Missense_Mutation p.P220L 0.26 deleterious(0) possibly_damaging(0.85) TCGA-CZ-4865-01 X 72092373 72092373 C T DMRTC1 Silent p.Q164Q 0.08 TCGA-CZ-4865-01 X 72432980 72432980 T G NAP1L2 Missense_Mutation p.N450T 0.17 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-CZ-4865-01 X 73812508 73812508 C G RLIM Missense_Mutation p.R214S 0.16 tolerated(0.16) unknown(0) TCGA-CZ-4866-01 10 101165548 101165549 GA - GOT1 Frame_Shift_Del p.P203Gfs*20 0.34 TCGA-CZ-4866-01 10 50018697 50018697 C T WDFY4 Missense_Mutation p.P1654L 0.11 tolerated(0.06) benign(0.016) TCGA-CZ-4866-01 11 103024178 103024178 G T DYNC2H1 Missense_Mutation p.K1081N 0.13 benign(0.003) TCGA-CZ-4866-01 11 107833105 107833105 A C RAB39A 3'UTR 0.18 TCGA-CZ-4866-01 11 119229962 119229962 G A USP2 Missense_Mutation p.A347V 0.31 tolerated(0.18) probably_damaging(0.996) TCGA-CZ-4866-01 11 124266328 124266328 A T OR8B3 Missense_Mutation p.I307N 0.32 deleterious_low_confidence(0.03) benign(0.284) TCGA-CZ-4866-01 11 216647 216647 G A SIRT3 3'UTR 0.15 TCGA-CZ-4866-01 11 47433931 47433931 G A SLC39A13 Silent p.Q150Q 0.31 TCGA-CZ-4866-01 11 5068157 5068157 C T OR52J3 Silent p.Y134Y 0.22 TCGA-CZ-4866-01 11 57518692 57518692 T C BTBD18 5'UTR 0.08 TCGA-CZ-4866-01 11 59860282 59860283 - T MS4A2 Frame_Shift_Ins p.L114Ffs*6 0.32 TCGA-CZ-4866-01 11 65617711 65617711 G C SNX32 Missense_Mutation p.E115Q 0.37 deleterious(0.02) probably_damaging(0.975) TCGA-CZ-4866-01 11 73066671 73066671 C - ARHGEF17 Frame_Shift_Del p.P1183Lfs*7 0.45 TCGA-CZ-4866-01 12 109689927 109689927 A T ACACB Missense_Mutation p.H1956L 0.33 deleterious(0.04) probably_damaging(0.978) TCGA-CZ-4866-01 12 130845828 130845828 C A PIWIL1 Missense_Mutation p.T590N 0.37 deleterious(0.02) probably_damaging(1) TCGA-CZ-4866-01 12 14943401 14943401 C A WBP11 Missense_Mutation p.G433V 0.30 tolerated_low_confidence(0.17) unknown(0) TCGA-CZ-4866-01 12 52282005 52282005 C T ANKRD33 Missense_Mutation p.S12F 0.33 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-CZ-4866-01 12 69985846 69985846 G T CCT2 Silent p.L219L 0.20 TCGA-CZ-4866-01 12 86383258 86383258 G A MGAT4C Missense_Mutation p.R23C 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CZ-4866-01 14 102028537 102028537 G T DIO3 Missense_Mutation p.G235V 0.27 tolerated(0.3) possibly_damaging(0.905) TCGA-CZ-4866-01 14 23240790 23240790 G C OXA1L 3'UTR 0.30 TCGA-CZ-4866-01 14 42360818 42360818 C T LRFN5 Missense_Mutation p.T584M 0.31 tolerated(0.11) benign(0.124) TCGA-CZ-4866-01 15 43531237 43531237 G A TGM5 Missense_Mutation p.P375S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-CZ-4866-01 15 50211075 50211075 C A ATP8B4 Missense_Mutation p.A666S 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-CZ-4866-01 16 14041845 14041845 C G ERCC4 Missense_Mutation p.L798V 0.26 deleterious(0) probably_damaging(0.925) TCGA-CZ-4866-01 16 30679940 30679940 G A FBRS Missense_Mutation p.G712R 0.38 probably_damaging(0.999) TCGA-CZ-4866-01 17 18219207 18219207 T A SMCR8 Missense_Mutation p.F35Y 0.34 tolerated(0.36) benign(0.005) TCGA-CZ-4866-01 17 48456585 48456585 G C EME1 Missense_Mutation p.E423D 0.34 deleterious(0.04) benign(0.382) TCGA-CZ-4866-01 17 66364848 66364848 C T ARSG Silent p.D288D 0.10 TCGA-CZ-4866-01 17 78306048 78306048 G A RNF213 Missense_Mutation p.A1254T 0.43 benign(0.047) TCGA-CZ-4866-01 17 9737136 9737136 C T GLP2R Missense_Mutation p.L68F 0.11 tolerated(0.1) possibly_damaging(0.878) TCGA-CZ-4866-01 18 12814354 12814354 T G PTPN2 Missense_Mutation p.M236L 0.24 tolerated(0.09) benign(0.004) TCGA-CZ-4866-01 18 47803544 47803544 A C MBD1 Silent p.V47V 0.23 TCGA-CZ-4866-01 18 55020027 55020027 C A ST8SIA3 5'UTR 0.38 TCGA-CZ-4866-01 19 10979899 10979899 G A C19orf38 Silent p.T183T 0.27 TCGA-CZ-4866-01 19 38190296 38190296 T A ZNF607 Missense_Mutation p.I246F 0.18 deleterious(0.01) possibly_damaging(0.908) TCGA-CZ-4866-01 19 41942328 41942328 A G ATP5SL Missense_Mutation p.F95L 0.34 tolerated(0.28) benign(0.002) TCGA-CZ-4866-01 19 44586259 44586259 G A ZNF284 Splice_Site p.X79_splice 0.16 TCGA-CZ-4866-01 19 47844249 47844249 C T C5AR2 Missense_Mutation p.R65C 0.12 deleterious(0.02) benign(0.031) TCGA-CZ-4866-01 19 53345371 53345371 G A ZNF468 Missense_Mutation p.S59L 0.28 tolerated(0.42) benign(0.002) TCGA-CZ-4866-01 19 54721109 54721109 C A LILRB3 Splice_Site p.X585_splice 0.34 TCGA-CZ-4866-01 19 55019389 55019389 G T LAIR2 Silent p.L118L 0.23 TCGA-CZ-4866-01 1 11189845 11189845 G C MTOR Missense_Mutation p.F1888L 0.47 deleterious(0.01) probably_damaging(0.987) TCGA-CZ-4866-01 1 12853440 12853440 G A PRAMEF1 Missense_Mutation p.A22T 0.10 tolerated(0.07) benign(0.007) TCGA-CZ-4866-01 1 145440274 145440274 G A TXNIP Missense_Mutation p.E194K 0.45 tolerated(0.28) benign(0.11) TCGA-CZ-4866-01 1 156643315 156643315 G A NES Missense_Mutation p.L305F 0.08 deleterious(0) probably_damaging(1) TCGA-CZ-4866-01 1 180794054 180794054 A G XPR1 Missense_Mutation p.N310S 0.22 deleterious(0.03) possibly_damaging(0.739) TCGA-CZ-4866-01 1 180849261 180849261 T C XPR1 Missense_Mutation p.C620R 0.16 deleterious(0) probably_damaging(0.993) TCGA-CZ-4866-01 1 233270864 233270864 C G PCNXL2 Missense_Mutation p.Q1244H 0.16 tolerated(0.05) benign(0.021) TCGA-CZ-4866-01 1 248202228 248202228 T C OR2L2 Missense_Mutation p.V220A 0.19 deleterious(0) possibly_damaging(0.895) TCGA-CZ-4866-01 1 27124357 27124357 T C PIGV 3'UTR 0.12 TCGA-CZ-4866-01 1 46782331 46782332 TT - UQCRH 3'UTR 0.20 TCGA-CZ-4866-01 1 68903915 68903915 G C RPE65 Silent p.P361P 0.22 TCGA-CZ-4866-01 1 74540469 74540469 T C LRRIQ3 Missense_Mutation p.I291M 0.41 tolerated(0.1) benign(0.032) TCGA-CZ-4866-01 1 86252141 86252141 T A COL24A1 Missense_Mutation p.I1319F 0.14 tolerated(0.05) benign(0.193) TCGA-CZ-4866-01 1 9165678 9165678 G C GPR157 Missense_Mutation p.S220C 0.15 deleterious(0.03) benign(0.001) TCGA-CZ-4866-01 20 50292728 50292728 A T ATP9A Silent p.V273V 0.32 TCGA-CZ-4866-01 20 58318178 58318178 G C PHACTR3 Silent p.T45T 0.29 TCGA-CZ-4866-01 20 61827960 61827960 C T YTHDF1 3'UTR 0.30 TCGA-CZ-4866-01 21 11049593 11049593 G A BAGE2 RNA 0.09 TCGA-CZ-4866-01 21 37418187 37418187 G A SETD4 Missense_Mutation p.P140L 0.34 deleterious(0.05) possibly_damaging(0.739) TCGA-CZ-4866-01 22 36894120 36894120 T C FOXRED2 Missense_Mutation p.S434G 0.31 tolerated(0.07) benign(0.009) TCGA-CZ-4866-01 2 101612061 101612061 T C NPAS2 3'UTR 0.19 TCGA-CZ-4866-01 2 136872770 136872770 A G CXCR4 Missense_Mutation p.I247T 0.45 deleterious(0.03) probably_damaging(0.976) TCGA-CZ-4866-01 2 179401957 179401957 T G TTN Missense_Mutation p.K33293N 0.16 TCGA-CZ-4866-01 2 220502504 220502504 T C SLC4A3 Missense_Mutation p.F940L 0.43 tolerated(0.09) benign(0.058) TCGA-CZ-4866-01 2 80136761 80136761 G A CTNNA2 Silent p.R298R 0.50 TCGA-CZ-4866-01 3 160131258 160131258 T C SMC4 Intron 0.45 TCGA-CZ-4866-01 3 45972676 45972676 T C FYCO1 Missense_Mutation p.T1380A 0.18 tolerated(0.14) benign(0.025) TCGA-CZ-4866-01 3 52441418 52441418 G C BAP1 Missense_Mutation p.A145G 0.35 deleterious(0.02) possibly_damaging(0.85) TCGA-CZ-4866-01 3 52443568 52443568 A T BAP1 Splice_Site p.X41_splice 0.49 TCGA-CZ-4866-01 4 109084820 109084820 G A LEF1 Silent p.P106P 0.10 TCGA-CZ-4866-01 4 128732596 128732596 C A HSPA4L Missense_Mutation p.S461R 0.38 tolerated(0.98) benign(0.003) TCGA-CZ-4866-01 4 85722980 85722980 A G WDFY3 Missense_Mutation p.L882S 0.29 deleterious(0) possibly_damaging(0.774) TCGA-CZ-4866-01 4 875781 875781 G A GAK Silent p.F525F 0.13 TCGA-CZ-4866-01 4 87662898 87662898 G C PTPN13 Missense_Mutation p.E806Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-CZ-4866-01 4 89670106 89670106 T G FAM13A Missense_Mutation p.K720Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-CZ-4866-01 5 101597678 101597678 A G SLCO4C1 Missense_Mutation p.L320P 0.31 deleterious(0.03) benign(0.213) TCGA-CZ-4866-01 5 112876645 112876673 TTCTTTGATAATTAATTTAGAAGAGAAAC - YTHDC2 Splice_Site p.X404_splice 0.30 TCGA-CZ-4866-01 5 140187800 140187800 A G PCDHA4 Missense_Mutation p.N343S 0.08 deleterious_low_confidence(0.02) benign(0.002) TCGA-CZ-4866-01 5 38427225 38427225 G A EGFLAM Missense_Mutation p.R642Q 0.18 tolerated(0.19) benign(0.131) TCGA-CZ-4866-01 6 158517224 158517224 G A SYNJ2 Missense_Mutation p.G1440E 0.31 tolerated_low_confidence(0.2) benign(0.002) TCGA-CZ-4866-01 6 31675443 31675444 - A LY6G6F Frame_Shift_Ins p.N88Kfs*90 0.38 TCGA-CZ-4866-01 6 33411283 33411283 G T SYNGAP1 Missense_Mutation p.S985I 0.12 deleterious(0) probably_damaging(0.999) TCGA-CZ-4866-01 6 44107238 44107238 G A TMEM63B Missense_Mutation p.A148T 0.18 deleterious(0) possibly_damaging(0.845) TCGA-CZ-4866-01 6 46661744 46661744 A T TDRD6 Missense_Mutation p.H1960L 0.47 tolerated(0.23) benign(0.002) TCGA-CZ-4866-01 7 100281055 100281055 T A GIGYF1 Nonsense_Mutation p.R689* 0.41 TCGA-CZ-4866-01 7 102065632 102065632 T C PRKRIP1 3'UTR 0.50 TCGA-CZ-4866-01 7 108155935 108155935 T C PNPLA8 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CZ-4866-01 7 127013601 127013601 T C ZNF800 Missense_Mutation p.S597G 0.17 tolerated(0.12) benign(0.001) TCGA-CZ-4866-01 7 143097036 143097036 G A EPHA1 Silent p.L181L 0.44 TCGA-CZ-4866-01 7 151962266 151962266 G A KMT2C Silent p.C347C 0.05 TCGA-CZ-4866-01 7 44713430 44713434 TGACC - OGDH Frame_Shift_Del p.D227Gfs*11 0.37 TCGA-CZ-4866-01 7 47384598 47384598 G T TNS3 Silent p.I830I 0.35 TCGA-CZ-4866-01 7 87196210 87196210 C A ABCB1 Nonsense_Mutation p.G141* 0.19 TCGA-CZ-4866-01 7 91631974 91631974 T A AKAP9 Missense_Mutation p.S915T 0.40 benign(0.031) TCGA-CZ-4866-01 7 92970752 92970752 A G CCDC132 Missense_Mutation p.D691G 0.35 tolerated(0.31) benign(0.021) TCGA-CZ-4866-01 8 11615820 11615820 A C GATA4 Missense_Mutation p.M389L 0.40 tolerated(0.4) benign(0.001) TCGA-CZ-4866-01 8 37821592 37821592 C T ADRB3 3'UTR 0.25 TCGA-CZ-4866-01 8 57354188 57354188 C T PENK Silent p.S149S 0.45 TCGA-CZ-4866-01 X 102528850 102528850 C G TCEAL5 3'UTR 0.20 TCGA-CZ-5451-01 10 115636591 115636591 A - NHLRC2 Frame_Shift_Del p.D216Ifs*14 0.23 TCGA-CZ-5451-01 10 78709126 78709126 T C KCNMA1 Splice_Site p.X812_splice 0.10 TCGA-CZ-5451-01 10 88930275 88930275 G C FAM35A Silent p.L558L 0.29 TCGA-CZ-5451-01 10 97684091 97684091 C A C10orf131 Missense_Mutation p.Q32K 0.08 tolerated(0.12) benign(0) TCGA-CZ-5451-01 11 103797665 103797665 C A PDGFD Missense_Mutation p.G321V 0.32 tolerated(0.08) probably_damaging(0.982) TCGA-CZ-5451-01 11 108201113 108201113 A T ATM Missense_Mutation p.N2494Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-CZ-5451-01 11 108203617 108203617 G - ATM Frame_Shift_Del p.T2640Lfs*6 0.25 TCGA-CZ-5451-01 11 18726190 18726190 A G TMEM86A 3'UTR 0.24 TCGA-CZ-5451-01 11 25100364 25100364 A T LUZP2 3'UTR 0.17 TCGA-CZ-5451-01 11 46747604 46747604 A G F2 Missense_Mutation p.N252S 0.31 tolerated(0.51) benign(0.003) TCGA-CZ-5451-01 11 5068347 5068347 G A OR52J3 Missense_Mutation p.G198S 0.28 tolerated(0.32) benign(0.021) TCGA-CZ-5451-01 11 61183665 61183665 G T CPSF7 Missense_Mutation p.P336T 0.24 deleterious(0) probably_damaging(0.999) TCGA-CZ-5451-01 11 6238548 6238548 T A FAM160A2 Intron 0.25 TCGA-CZ-5451-01 11 64514199 64514199 A G PYGM Missense_Mutation p.Y821H 0.27 deleterious(0) probably_damaging(1) TCGA-CZ-5451-01 12 108082496 108082496 G A PWP1 Missense_Mutation p.G79D 0.36 tolerated(0.23) benign(0) TCGA-CZ-5451-01 12 123028814 123028814 G - KNTC1 Frame_Shift_Del 0.27 TCGA-CZ-5451-01 12 133327385 133327385 T A ANKLE2 Missense_Mutation p.M231L 0.30 tolerated(0.13) benign(0.022) TCGA-CZ-5451-01 12 1995485 1995485 G A CACNA2D4 Silent p.S299S 0.05 TCGA-CZ-5451-01 12 55886972 55886972 G C OR6C68 Missense_Mutation p.G271R 0.32 tolerated_low_confidence(0.09) benign(0.444) TCGA-CZ-5451-01 12 55945508 55945508 C G OR6C4 Missense_Mutation p.F166L 0.30 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-CZ-5451-01 12 6439822 6439822 G T TNFRSF1A Silent p.L227L 0.25 TCGA-CZ-5451-01 14 102446833 102446833 A G DYNC1H1 Missense_Mutation p.I303V 0.32 benign(0.264) TCGA-CZ-5451-01 14 23018621 23018621 A C TRAC Missense_Mutation p.E105A 0.25 deleterious(0) probably_damaging(0.971) TCGA-CZ-5451-01 14 39645318 39645318 T C PNN Silent p.P50P 0.30 TCGA-CZ-5451-01 14 55817639 55817639 T G FBXO34 Silent p.P177P 0.35 TCGA-CZ-5451-01 14 92466309 92466309 T G TRIP11 Intron 0.34 TCGA-CZ-5451-01 15 101009686 101009686 C G CERS3 Missense_Mutation p.A248P 0.30 deleterious(0) probably_damaging(1) TCGA-CZ-5451-01 15 50168715 50168715 C T ATP8B4 Silent p.V929V 0.31 TCGA-CZ-5451-01 16 48149472 48149472 G A ABCC12 Missense_Mutation p.R615C 0.39 deleterious(0) probably_damaging(1) TCGA-CZ-5451-01 16 58555162 58555168 AAGGTAA - CNOT1 Frame_Shift_Del p.I2324Tfs*4 0.20 TCGA-CZ-5451-01 16 89986049 89986049 T C MC1R Missense_Mutation p.M128T 0.29 deleterious(0) possibly_damaging(0.677) TCGA-CZ-5451-01 17 1198861 1198861 C G TUSC5 Missense_Mutation p.T155S 0.35 deleterious(0.03) possibly_damaging(0.874) TCGA-CZ-5451-01 17 1382903 1382903 G - MYO1C Frame_Shift_Del p.L335Sfs*4 0.35 TCGA-CZ-5451-01 17 18874338 18874338 T C SLC5A10 Missense_Mutation p.I218T 0.26 deleterious(0) probably_damaging(0.999) TCGA-CZ-5451-01 17 19619790 19619790 A G SLC47A2 Missense_Mutation p.F27L 0.12 tolerated(0.09) possibly_damaging(0.896) TCGA-CZ-5451-01 17 38508320 38508320 A G RARA Missense_Mutation p.T210A 0.20 tolerated(0.09) benign(0.297) TCGA-CZ-5451-01 17 48916926 48916926 T A WFIKKN2 Missense_Mutation p.Y93N 0.41 deleterious(0.01) possibly_damaging(0.87) TCGA-CZ-5451-01 17 58008993 58008993 G A RPS6KB1 Missense_Mutation p.A200T 0.03 deleterious(0) probably_damaging(0.934) TCGA-CZ-5451-01 17 65141857 65141857 A G HELZ Splice_Site p.X923_splice 0.27 TCGA-CZ-5451-01 18 18546995 18546995 G A ROCK1 Nonsense_Mutation p.Q1079* 0.30 TCGA-CZ-5451-01 18 19119910 19119910 G A ESCO1 Missense_Mutation p.P672S 0.26 deleterious(0.01) probably_damaging(1) TCGA-CZ-5451-01 18 55143848 55143848 G A ONECUT2 Missense_Mutation p.V470I 0.35 tolerated(0.08) probably_damaging(0.998) TCGA-CZ-5451-01 18 61650927 61650927 C - SERPINB8 Frame_Shift_Del p.T180Kfs*17 0.64 TCGA-CZ-5451-01 18 7042148 7042148 G A LAMA1 Silent p.H419H 0.34 TCGA-CZ-5451-01 19 12188257 12188257 A T ZNF844 3'UTR 0.33 TCGA-CZ-5451-01 19 14157347 14157347 T C IL27RA Missense_Mutation p.V353A 0.37 deleterious(0) probably_damaging(1) TCGA-CZ-5451-01 19 17115085 17115085 T C CPAMD8 Missense_Mutation p.Y271C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CZ-5451-01 19 23836804 23836804 G A ZNF675 Missense_Mutation p.P311S 0.05 deleterious(0.02) possibly_damaging(0.677) TCGA-CZ-5451-01 19 46024608 46024608 T G VASP Silent p.L124L 0.36 TCGA-CZ-5451-01 19 49439432 49439433 - A DHDH Frame_Shift_Ins p.R116Qfs*90 0.47 TCGA-CZ-5451-01 19 49439433 49439433 G A DHDH Missense_Mutation p.R116Q 0.53 tolerated(0.11) benign(0.018) TCGA-CZ-5451-01 1 10394639 10394639 G A KIF1B Missense_Mutation p.V950I 0.34 tolerated(0.09) probably_damaging(0.965) TCGA-CZ-5451-01 1 154574687 154574687 A T ADAR Nonsense_Mutation p.L144* 0.32 TCGA-CZ-5451-01 1 198687258 198687258 A T PTPRC Missense_Mutation p.T496S 0.08 tolerated(0.33) benign(0.158) TCGA-CZ-5451-01 1 220346067 220346067 A G RAB3GAP2 Silent p.V776V 0.31 TCGA-CZ-5451-01 1 32259422 32259422 G T SPOCD1 Silent p.A820A 0.32 TCGA-CZ-5451-01 1 36931800 36931800 G A CSF3R 3'UTR 0.34 TCGA-CZ-5451-01 1 38455225 38455225 G A SF3A3 Nonsense_Mutation p.Q47* 0.25 TCGA-CZ-5451-01 1 38455226 38455226 C T SF3A3 Missense_Mutation p.M46I 0.25 deleterious(0.02) benign(0.044) TCGA-CZ-5451-01 1 51436156 51436156 G C CDKN2C Missense_Mutation p.R39T 0.31 deleterious(0) probably_damaging(0.999) TCGA-CZ-5451-01 1 55077410 55077410 A C FAM151A Missense_Mutation p.L270R 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-CZ-5451-01 1 55619805 55619805 T G USP24 Missense_Mutation p.E600A 0.30 deleterious(0.01) possibly_damaging(0.877) TCGA-CZ-5451-01 1 66827366 66827366 C A PDE4B Missense_Mutation p.L304I 0.34 tolerated(0.39) benign(0.026) TCGA-CZ-5451-01 20 17417410 17417410 G T PCSK2 Missense_Mutation p.S256I 0.48 deleterious(0) probably_damaging(0.977) TCGA-CZ-5451-01 20 33012330 33012330 A C ITCH Silent p.R215R 0.31 TCGA-CZ-5451-01 21 30426525 30426525 T G USP16 3'UTR 0.37 TCGA-CZ-5451-01 2 149851037 149851037 A G KIF5C Missense_Mutation p.K670E 0.29 tolerated(0.2) benign(0.012) TCGA-CZ-5451-01 2 160661456 160661456 A G LY75 Intron 0.31 TCGA-CZ-5451-01 2 169952404 169952404 C T DHRS9 3'UTR 0.11 TCGA-CZ-5451-01 2 172291646 172291646 C G DCAF17 Silent p.A60A 0.27 TCGA-CZ-5451-01 2 183616891 183616891 A G DNAJC10 Silent p.T509T 0.25 TCGA-CZ-5451-01 2 20518361 20518361 C T PUM2 Missense_Mutation p.D33N 0.05 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-CZ-5451-01 2 27719812 27719812 C T GCKR Missense_Mutation p.P14L 0.32 tolerated(0.1) benign(0.014) TCGA-CZ-5451-01 2 32693677 32693677 A T BIRC6 Missense_Mutation p.N1985Y 0.33 probably_damaging(0.996) TCGA-CZ-5451-01 2 72362015 72362015 C T CYP26B1 Missense_Mutation p.G246R 0.33 tolerated(0.36) possibly_damaging(0.601) TCGA-CZ-5451-01 2 89103729 89103729 A G ANKRD36BP2 RNA 0.19 TCGA-CZ-5451-01 2 99256416 99256416 G A MGAT4A Missense_Mutation p.P393S 0.32 tolerated(0.05) benign(0.411) TCGA-CZ-5451-01 3 148459496 148459496 C G AGTR1 Missense_Mutation p.A225G 0.44 deleterious(0) possibly_damaging(0.848) TCGA-CZ-5451-01 3 47887677 47887677 T G DHX30 Missense_Mutation p.I372S 0.39 tolerated(0.73) benign(0.001) TCGA-CZ-5451-01 3 52643908 52643908 T - PBRM1 Frame_Shift_Del p.N663Mfs*7 0.35 TCGA-CZ-5451-01 3 62388785 62388785 G A CADPS Nonsense_Mutation p.Q1285* 0.07 TCGA-CZ-5451-01 3 62388786 62388786 A G CADPS Silent p.Y1284Y 0.07 TCGA-CZ-5451-01 3 9068661 9068661 G A SRGAP3 Missense_Mutation p.P520S 0.08 deleterious(0.01) probably_damaging(0.975) TCGA-CZ-5451-01 4 114232524 114232524 C T ANK2 Nonsense_Mutation p.R888* 0.04 TCGA-CZ-5451-01 4 164534641 164534641 C T MARCH1 Intron 0.04 TCGA-CZ-5451-01 4 175416726 175416726 G - HPGD Frame_Shift_Del p.I158* 0.10 TCGA-CZ-5451-01 4 40337469 40337469 G C CHRNA9 5'UTR 0.31 TCGA-CZ-5451-01 4 517502 517502 G A PIGG Silent p.Q623Q 0.10 TCGA-CZ-5451-01 4 77100845 77100845 C A SCARB2 Missense_Mutation p.W146L 0.28 tolerated(0.78) benign(0.002) TCGA-CZ-5451-01 5 14358435 14358435 A G TRIO Missense_Mutation p.E732G 0.08 benign(0) TCGA-CZ-5451-01 5 179546418 179546418 T G RASGEF1C Missense_Mutation p.I279L 0.17 tolerated(0.22) benign(0.047) TCGA-CZ-5451-01 5 39285281 39285281 G A C9 3'UTR 0.23 TCGA-CZ-5451-01 5 39285282 39285282 C T C9 3'UTR 0.23 TCGA-CZ-5451-01 6 107655484 107655484 G A PDSS2 Missense_Mutation p.L117F 0.32 deleterious(0) probably_damaging(0.999) TCGA-CZ-5451-01 6 112441542 112441542 G T LAMA4 Missense_Mutation p.H1537N 0.27 tolerated(1) benign(0.349) TCGA-CZ-5451-01 6 112441543 112441543 A T LAMA4 Silent p.G1536G 0.26 TCGA-CZ-5451-01 6 126669610 126669610 A G CENPW Splice_Site p.X81_splice 0.31 TCGA-CZ-5451-01 6 28348341 28348341 A C ZSCAN12 3'UTR 0.25 TCGA-CZ-5451-01 6 74078432 74078432 G A OOEP 3'Flank 0.29 TCGA-CZ-5451-01 7 101952119 101952119 T G SH2B2 Missense_Mutation p.I328S 0.12 deleterious(0) probably_damaging(0.962) TCGA-CZ-5451-01 7 102743799 102743799 T C NAPEPLD 3'UTR 0.31 TCGA-CZ-5451-01 7 111379463 111379463 G T DOCK4 Nonsense_Mutation p.S1695* 0.39 TCGA-CZ-5451-01 7 11446611 11446611 C G THSD7A Missense_Mutation p.D1330H 0.32 deleterious(0.05) benign(0.027) TCGA-CZ-5451-01 7 123303919 123303919 C A LMOD2 3'UTR 0.32 TCGA-CZ-5451-01 7 127224747 127224747 G A GCC1 Nonsense_Mutation p.Q164* 0.40 TCGA-CZ-5451-01 7 139719938 139719938 T - TBXAS1 3'UTR 0.36 TCGA-CZ-5451-01 7 140710230 140710230 A C MRPS33 Silent p.L68L 0.34 TCGA-CZ-5451-01 8 125498660 125498660 T G RNF139 Nonsense_Mutation p.L257* 0.30 TCGA-CZ-5451-01 8 17409461 17409461 G A SLC7A2 Missense_Mutation p.V381I 0.07 deleterious(0.04) possibly_damaging(0.758) TCGA-CZ-5451-01 8 1876772 1876772 A G ARHGEF10 Silent p.R959R 0.08 TCGA-CZ-5451-01 8 69009342 69009342 G C PREX2 Missense_Mutation p.G820A 0.25 deleterious(0.05) probably_damaging(0.997) TCGA-CZ-5451-01 9 131669449 131669449 T A LRRC8A Silent p.I2I 0.28 TCGA-CZ-5451-01 9 20990252 20990253 - G FOCAD Frame_Shift_Ins p.P1713Tfs*24 0.37 TCGA-CZ-5451-01 9 33473894 33473894 C T NOL6 5'UTR 0.24 TCGA-CZ-5452-01 10 49988080 49988080 C T WDFY4 Silent p.H1164H 0.17 TCGA-CZ-5452-01 11 76506739 76506739 G A TSKU Missense_Mutation p.E27K 0.15 deleterious(0.01) benign(0.194) TCGA-CZ-5452-01 11 93836116 93836116 G T HEPHL1 Missense_Mutation p.R871I 0.16 deleterious(0) probably_damaging(0.995) TCGA-CZ-5452-01 12 114364876 114364877 - T RBM19 Frame_Shift_Ins p.E743Rfs*72 0.18 TCGA-CZ-5452-01 12 88939566 88939566 T - KITLG Frame_Shift_Del p.N31Ifs*3 0.18 TCGA-CZ-5452-01 14 36143766 36143766 G A RALGAPA1 Nonsense_Mutation p.Q1086* 0.15 TCGA-CZ-5452-01 15 91020913 91020913 A C IQGAP1 Missense_Mutation p.I1041L 0.16 tolerated(0.41) benign(0.004) TCGA-CZ-5452-01 17 42476146 42476146 C A GPATCH8 Missense_Mutation p.R1100M 0.20 deleterious(0) unknown(0) TCGA-CZ-5452-01 17 4804255 4804255 T - C17orf107 3'UTR 0.21 TCGA-CZ-5452-01 17 56435857 56435857 T C RNF43 Missense_Mutation p.H427R 0.08 tolerated(0.08) benign(0.282) TCGA-CZ-5452-01 18 3879140 3879140 T C DLGAP1 Missense_Mutation p.Q310R 0.11 tolerated(0.58) benign(0.003) TCGA-CZ-5452-01 19 42912472 42912472 G C LIPE Missense_Mutation p.F474L 0.16 deleterious(0) possibly_damaging(0.897) TCGA-CZ-5452-01 19 43234081 43234081 G C PSG3 Missense_Mutation p.S279R 0.13 tolerated(0.55) benign(0.11) TCGA-CZ-5452-01 19 50358311 50358311 T A PTOV1 Missense_Mutation p.C179S 0.24 tolerated(0.22) benign(0.04) TCGA-CZ-5452-01 19 53085499 53085499 C - ZNF701 Frame_Shift_Del p.Q129Kfs*51 0.12 TCGA-CZ-5452-01 19 53577475 53577475 C T ZNF160 Silent p.G63G 0.19 TCGA-CZ-5452-01 19 56467043 56467043 G T NLRP8 Missense_Mutation p.R540L 0.16 tolerated(0.7) benign(0.155) TCGA-CZ-5452-01 19 57838032 57838032 C G ZNF543 Nonsense_Mutation p.Y59* 0.15 TCGA-CZ-5452-01 19 6712358 6712358 G A C3 Silent p.G393G 0.11 TCGA-CZ-5452-01 1 179638437 179638437 C T TDRD5 Missense_Mutation p.P920S 0.05 tolerated(0.1) benign(0.182) TCGA-CZ-5452-01 1 1849870 1849870 C G TMEM52 Silent p.G57G 0.16 TCGA-CZ-5452-01 1 235971939 235971939 G A LYST Nonsense_Mutation p.Q727* 0.15 TCGA-CZ-5452-01 1 243362432 243362432 C A CEP170 Missense_Mutation p.E187D 0.30 tolerated(1) benign(0.003) TCGA-CZ-5452-01 1 29585247 29585247 G A PTPRU Missense_Mutation p.A146T 0.14 deleterious(0) possibly_damaging(0.805) TCGA-CZ-5452-01 20 17641024 17641024 G T RRBP1 Silent p.A43A 0.17 TCGA-CZ-5452-01 20 55108443 55108443 T C FAM209B Missense_Mutation p.C16R 0.17 deleterious(0.02) probably_damaging(0.919) TCGA-CZ-5452-01 2 18765441 18765441 C T NT5C1B Silent p.E328E 0.16 TCGA-CZ-5452-01 2 232458055 232458055 A C C2orf57 Missense_Mutation p.K131N 0.14 tolerated(0.17) benign(0.023) TCGA-CZ-5452-01 2 33747059 33747059 A - RASGRP3 Frame_Shift_Del p.V138Yfs*70 0.22 TCGA-CZ-5452-01 3 52438499 52438499 T - BAP1 Frame_Shift_Del p.D407Vfs*23 0.18 TCGA-CZ-5452-01 3 56667432 56667432 G T FAM208A Missense_Mutation p.N1129K 0.20 tolerated(0.8) benign(0.096) TCGA-CZ-5452-01 4 76489700 76489700 G T C4orf26 Missense_Mutation p.R163I 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.506) TCGA-CZ-5452-01 5 140745027 140745027 G A PCDHGA5 Missense_Mutation p.G377E 0.16 tolerated_low_confidence(0.06) possibly_damaging(0.651) TCGA-CZ-5452-01 5 156592756 156592756 G A FAM71B Silent p.L142L 0.36 TCGA-CZ-5452-01 5 156592758 156592758 C T FAM71B Missense_Mutation p.R141H 0.36 deleterious(0) possibly_damaging(0.751) TCGA-CZ-5452-01 5 52404436 52404436 G A MOCS2 5'UTR 0.17 TCGA-CZ-5452-01 6 129371227 129371227 C A LAMA2 Missense_Mutation p.P93T 0.20 deleterious(0.02) possibly_damaging(0.672) TCGA-CZ-5452-01 6 38160335 38160335 G T BTBD9 Missense_Mutation p.S534Y 0.18 deleterious(0.01) probably_damaging(0.913) TCGA-CZ-5452-01 7 4830337 4830337 T C AP5Z1 Missense_Mutation p.Y658H 0.27 tolerated(0.49) benign(0.012) TCGA-CZ-5452-01 8 75756222 75756222 G T PI15 Missense_Mutation p.D94Y 0.18 deleterious(0) probably_damaging(0.977) TCGA-CZ-5452-01 9 125152485 125152485 G T PTGS1 Silent p.G435G 0.20 TCGA-CZ-5452-01 9 32631847 32631847 C T TAF1L Missense_Mutation p.R1244Q 0.03 deleterious(0.01) probably_damaging(0.987) TCGA-CZ-5452-01 9 75555088 75555088 G A ALDH1A1 Silent p.L49L 0.20 TCGA-CZ-5452-01 X 38262963 38262963 C T OTC Silent p.F211F 0.12 TCGA-CZ-5453-01 10 123683801 123683801 G A ATE1 Silent p.L50L 0.34 TCGA-CZ-5453-01 10 125447555 125447555 G A GPR26 Missense_Mutation p.R298Q 0.14 tolerated(0.1) possibly_damaging(0.701) TCGA-CZ-5453-01 10 126662823 126662823 T C ZRANB1 Missense_Mutation p.L428S 0.36 deleterious(0) probably_damaging(0.991) TCGA-CZ-5453-01 10 70502139 70502139 G T CCAR1 Missense_Mutation p.V111F 0.39 deleterious(0) unknown(0) TCGA-CZ-5453-01 10 75574945 75574945 A G CAMK2G Missense_Mutation p.I500T 0.33 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-CZ-5453-01 10 76910306 76910306 T A SAMD8 Missense_Mutation p.L7H 0.39 tolerated(0.15) possibly_damaging(0.711) TCGA-CZ-5453-01 11 100863191 100863191 A G TMEM133 Missense_Mutation p.Y51C 0.41 tolerated_low_confidence(0.09) possibly_damaging(0.878) TCGA-CZ-5453-01 11 110461416 110461416 G T ARHGAP20 Missense_Mutation p.H421N 0.05 tolerated(0.43) benign(0.006) TCGA-CZ-5453-01 11 113270770 113270770 G T ANKK1 Missense_Mutation p.W693C 0.44 tolerated(0.08) benign(0.201) TCGA-CZ-5453-01 11 113286211 113286211 G A DRD2 Missense_Mutation p.R219C 0.05 deleterious(0) probably_damaging(0.996) TCGA-CZ-5453-01 11 117186327 117186327 T C BACE1 Missense_Mutation p.E62G 0.24 tolerated(0.12) benign(0.023) TCGA-CZ-5453-01 11 1908764 1908764 G T LSP1 Missense_Mutation p.V459L 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CZ-5453-01 11 47267291 47267291 T A ACP2 Missense_Mutation p.N131I 0.28 deleterious(0) probably_damaging(0.95) TCGA-CZ-5453-01 12 129293991 129293991 G A SLC15A4 Missense_Mutation p.L347F 0.37 deleterious(0.01) benign(0.25) TCGA-CZ-5453-01 12 129293993 129293993 C A SLC15A4 Missense_Mutation p.S346I 0.37 deleterious(0) possibly_damaging(0.733) TCGA-CZ-5453-01 12 27916081 27916081 A T MANSC4 Missense_Mutation p.S205T 0.35 tolerated(0.26) benign(0.165) TCGA-CZ-5453-01 12 54105694 54105695 GA - CALCOCO1 3'UTR 0.28 TCGA-CZ-5453-01 13 113464970 113464970 C T ATP11A Missense_Mutation p.A124V 0.31 deleterious(0) benign(0.158) TCGA-CZ-5453-01 13 20638656 20638656 G C ZMYM2 Missense_Mutation p.E1035Q 0.13 tolerated(0.07) possibly_damaging(0.652) TCGA-CZ-5453-01 13 25285629 25285629 C A ATP12A Intron 0.42 TCGA-CZ-5453-01 13 29275084 29275084 T G SLC46A3 Nonstop_Mutation p.*464Yext*18 0.36 TCGA-CZ-5453-01 13 88329235 88329235 T C SLITRK5 Missense_Mutation p.L531P 0.09 tolerated(0.08) benign(0.377) TCGA-CZ-5453-01 13 96361504 96361504 G A DNAJC3 Missense_Mutation p.D36N 0.42 tolerated(0.09) benign(0.012) TCGA-CZ-5453-01 14 74205845 74205845 G A ELMSAN1 Silent p.G289G 0.12 TCGA-CZ-5453-01 15 43661269 43661269 T C ZSCAN29 Silent p.K125K 0.35 TCGA-CZ-5453-01 15 69003112 69003112 C T CORO2B Silent p.N125N 0.31 TCGA-CZ-5453-01 15 79748707 79748707 T A KIAA1024 Missense_Mutation p.V73E 0.39 tolerated(0.3) benign(0.177) TCGA-CZ-5453-01 15 85448772 85448772 G T SLC28A1 Silent p.V202V 0.07 TCGA-CZ-5453-01 15 90768565 90768565 T A SEMA4B Missense_Mutation p.I486N 0.37 deleterious(0) probably_damaging(0.979) TCGA-CZ-5453-01 16 2043317 2043317 G A SYNGR3 3'UTR 0.20 TCGA-CZ-5453-01 16 30006455 30006455 C T HIRIP3 Silent p.E90E 0.42 TCGA-CZ-5453-01 16 50261849 50261849 C T PAPD5 Nonsense_Mutation p.Q619* 0.44 TCGA-CZ-5453-01 16 57265167 57265167 A - RSPRY1 Frame_Shift_Del p.M489* 0.27 TCGA-CZ-5453-01 16 68328656 68328656 C A SLC7A6 Silent p.S357S 0.35 TCGA-CZ-5453-01 17 42393884 42393884 A T RUNDC3A Missense_Mutation p.Y362F 0.27 tolerated_low_confidence(0.34) benign(0.004) TCGA-CZ-5453-01 17 66251944 66251944 C A AMZ2 Missense_Mutation p.P285H 0.32 deleterious(0) probably_damaging(1) TCGA-CZ-5453-01 17 79539069 79539069 G C NPLOC4 Missense_Mutation p.L443V 0.12 deleterious(0) probably_damaging(0.974) TCGA-CZ-5453-01 17 80706748 80706748 T C FN3K Silent p.D162D 0.40 TCGA-CZ-5453-01 18 43572169 43572169 C A PSTPIP2 Splice_Site p.X248_splice 0.38 TCGA-CZ-5453-01 18 74620408 74620408 G A ZNF236 Silent p.T808T 0.43 TCGA-CZ-5453-01 19 11113809 11113809 G T SMARCA4 Silent p.L639L 0.43 TCGA-CZ-5453-01 19 11464468 11464469 - TC CCDC159 Frame_Shift_Ins p.A232Lfs*10 0.25 TCGA-CZ-5453-01 19 13985689 13985689 G A NANOS3 5'Flank 0.39 TCGA-CZ-5453-01 19 14673981 14673981 C A TECR Intron 0.26 TCGA-CZ-5453-01 19 15376312 15376314 GAC - BRD4 In_Frame_Del p.V234del 0.38 TCGA-CZ-5453-01 19 15376316 15376316 A T BRD4 Missense_Mutation p.I233N 0.38 unknown(0) TCGA-CZ-5453-01 19 15852604 15852604 C T OR10H3 Silent p.N134N 0.14 TCGA-CZ-5453-01 19 17338790 17338790 C G OCEL1 Missense_Mutation p.S198R 0.25 tolerated(0.61) benign(0.002) TCGA-CZ-5453-01 19 34904640 34904640 A C PDCD2L Splice_Site p.X229_splice 0.37 TCGA-CZ-5453-01 19 3765311 3765311 A T MRPL54 Missense_Mutation p.D89V 0.36 deleterious(0) probably_damaging(0.969) TCGA-CZ-5453-01 19 45974531 45974531 G A FOSB Missense_Mutation p.R176Q 0.12 deleterious(0) possibly_damaging(0.553) TCGA-CZ-5453-01 19 55645562 55645562 C G TNNT1 Missense_Mutation p.A208P 0.40 tolerated_low_confidence(0.25) benign(0.164) TCGA-CZ-5453-01 1 145597524 145597524 C T POLR3C Missense_Mutation p.V354I 0.39 tolerated(0.21) benign(0.016) TCGA-CZ-5453-01 1 154920626 154920626 C T PBXIP1 Missense_Mutation p.G209E 0.38 deleterious(0) probably_damaging(1) TCGA-CZ-5453-01 1 157666163 157666163 A C FCRL3 Intron 0.30 TCGA-CZ-5453-01 1 161595993 161595993 C T FCGR3B Silent p.R209R 0.39 TCGA-CZ-5453-01 1 226030115 226030115 A G EPHX1 Missense_Mutation p.E327G 0.30 deleterious(0) probably_damaging(0.986) TCGA-CZ-5453-01 1 24124241 24124241 C G GALE Missense_Mutation p.G158R 0.32 deleterious(0) probably_damaging(1) TCGA-CZ-5453-01 1 36214086 36214086 T - CLSPN Frame_Shift_Del p.S798Vfs*39 0.33 TCGA-CZ-5453-01 1 40131295 40131295 G A NT5C1A Missense_Mutation p.R111W 0.10 deleterious(0) probably_damaging(0.995) TCGA-CZ-5453-01 1 43200901 43200901 C T CLDN19 Intron 0.41 TCGA-CZ-5453-01 1 44422057 44422057 C T IPO13 Missense_Mutation p.A296V 0.46 deleterious(0) possibly_damaging(0.558) TCGA-CZ-5453-01 1 52249639 52249639 T A OSBPL9 Missense_Mutation p.H532Q 0.41 deleterious(0.04) probably_damaging(0.985) TCGA-CZ-5453-01 1 79107131 79107131 C T IFI44L Silent p.V387V 0.04 TCGA-CZ-5453-01 1 909699 909699 T C PLEKHN1 Missense_Mutation p.S553P 0.08 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-CZ-5453-01 22 32633231 32633231 C G SLC5A4 Missense_Mutation p.A222P 0.38 deleterious(0.02) probably_damaging(0.992) TCGA-CZ-5453-01 22 38340062 38340062 G - C22orf23 3'UTR 0.42 TCGA-CZ-5453-01 22 50187904 50187904 C T BRD1 Missense_Mutation p.G713S 0.33 tolerated(0.8) benign(0) TCGA-CZ-5453-01 2 162091890 162091890 C T TANK Missense_Mutation p.S380L 0.39 tolerated(1) benign(0) TCGA-CZ-5453-01 2 218954615 218954615 C T RUFY4 3'UTR 0.23 TCGA-CZ-5453-01 2 26502013 26502013 T C HADHB Missense_Mutation p.V214A 0.36 deleterious(0) possibly_damaging(0.728) TCGA-CZ-5453-01 2 27456649 27456649 C T CAD Silent p.V1124V 0.48 TCGA-CZ-5453-01 3 10191524 10191524 G T VHL Nonsense_Mutation p.E173* 0.69 TCGA-CZ-5453-01 3 111923204 111923204 A C SLC9C1 Missense_Mutation p.F678C 0.58 deleterious(0) probably_damaging(0.99) TCGA-CZ-5453-01 3 130394072 130394072 C - COL6A6 Frame_Shift_Del p.L2209Sfs*21 0.41 TCGA-CZ-5453-01 3 52677265 52677265 G - PBRM1 Frame_Shift_Del p.R332Vfs*30 0.42 TCGA-CZ-5453-01 3 57913033 57913033 C G SLMAP Missense_Mutation p.P785R 0.54 tolerated_low_confidence(0.14) benign(0.261) TCGA-CZ-5453-01 4 13601273 13601274 AG - BOD1L1 Frame_Shift_Del p.S2417Cfs*57 0.27 TCGA-CZ-5453-01 4 48501346 48501346 A T FRYL 3'UTR 0.45 TCGA-CZ-5453-01 4 68995527 68995527 C T TMPRSS11F Splice_Site p.X4_splice 0.41 TCGA-CZ-5453-01 4 99407929 99407929 C T TSPAN5 Missense_Mutation p.C80Y 0.13 deleterious(0) probably_damaging(0.936) TCGA-CZ-5453-01 5 101592957 101592957 G C SLCO4C1 Nonsense_Mutation p.S444* 0.39 TCGA-CZ-5453-01 5 137776732 137776732 C T REEP2 Silent p.A20A 0.39 TCGA-CZ-5453-01 5 154181675 154181676 TT - LARP1 Frame_Shift_Del p.F532* 0.31 TCGA-CZ-5453-01 5 172745139 172745139 A G STC2 Missense_Mutation p.I207T 0.39 tolerated(0.13) benign(0.377) TCGA-CZ-5453-01 5 175306022 175306022 G C CPLX2 Missense_Mutation p.R48P 0.41 deleterious(0) probably_damaging(0.997) TCGA-CZ-5453-01 5 43702815 43702815 C A NNT Missense_Mutation p.L1030I 0.36 tolerated(0.23) probably_damaging(0.999) TCGA-CZ-5453-01 5 79027932 79027932 C G CMYA5 Missense_Mutation p.T1115S 0.06 probably_damaging(0.935) TCGA-CZ-5453-01 5 90149227 90149227 A G GPR98 Silent p.L5777L 0.39 TCGA-CZ-5453-01 6 15246614 15246614 G A JARID2 5'UTR 0.30 TCGA-CZ-5453-01 6 2954917 2954917 G A SERPINB6 Silent p.F113F 0.04 TCGA-CZ-5453-01 7 124503402 124503402 A T POT1 Splice_Site p.X182_splice 0.31 TCGA-CZ-5453-01 7 134143812 134143812 C T AKR1B1 Translation_Start_Site p.M1? 0.40 deleterious(0.02) benign(0.03) TCGA-CZ-5453-01 7 150774944 150774944 G T FASTK Intron 0.42 TCGA-CZ-5453-01 7 2314823 2314823 C T SNX8 Silent p.V114V 0.55 TCGA-CZ-5453-01 7 6154957 6154957 T C USP42 Missense_Mutation p.L82P 0.57 tolerated(0.21) benign(0.009) TCGA-CZ-5453-01 7 96639202 96639202 C T DLX6 Missense_Mutation p.A242V 0.34 tolerated(0.12) benign(0.011) TCGA-CZ-5453-01 8 141545588 141545588 C A AGO2 Silent p.L750L 0.45 TCGA-CZ-5453-01 8 90971007 90971007 G - NBN Frame_Shift_Del p.P357Qfs*2 0.46 TCGA-CZ-5453-01 9 136201325 136201325 G A SURF6 Silent p.S69S 0.35 TCGA-CZ-5453-01 9 36665415 36665415 A G MELK Silent p.T415T 0.37 TCGA-CZ-5453-01 9 79936445 79936445 C T VPS13A Silent p.F1871F 0.36 TCGA-CZ-5453-01 9 94118164 94118164 C T AUH Splice_Site p.X140_splice 0.07 TCGA-CZ-5453-01 X 10427708 10427708 C - MID1 Frame_Shift_Del p.E475Dfs*5 0.58 TCGA-CZ-5453-01 X 104465016 104465016 G A TEX13A Silent p.N22N 0.08 TCGA-CZ-5453-01 X 153205589 153205589 A G RENBP Missense_Mutation p.L348P 0.70 tolerated(0.2) probably_damaging(0.916) TCGA-CZ-5454-01 10 92681008 92681008 G A ANKRD1 5'UTR 0.31 TCGA-CZ-5454-01 11 46895081 46895081 G A LRP4 Silent p.D1431D 0.30 TCGA-CZ-5454-01 11 71816983 71816983 G A LRTOMT Missense_Mutation p.A29T 0.30 tolerated_low_confidence(0.09) benign(0.001) TCGA-CZ-5454-01 14 23871904 23871904 A G MYH6 Splice_Site p.X334_splice 0.17 TCGA-CZ-5454-01 14 97009231 97009231 G A PAPOLA Splice_Site p.X430_splice 0.10 TCGA-CZ-5454-01 16 1884331 1884331 T A MEIOB Missense_Mutation p.I448F 0.32 tolerated(0.12) benign(0.037) TCGA-CZ-5454-01 16 30593843 30593843 C T ZNF785 3'UTR 0.39 TCGA-CZ-5454-01 17 29182285 29182285 G T ATAD5 Missense_Mutation p.V859L 0.32 tolerated(0.1) benign(0.005) TCGA-CZ-5454-01 17 37682372 37682372 T - CDK12 Frame_Shift_Del p.I1188Tfs*27 0.28 TCGA-CZ-5454-01 17 38153787 38153787 G C PSMD3 Missense_Mutation p.E520Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-CZ-5454-01 17 56440700 56440700 A G RNF43 Missense_Mutation p.M173T 0.39 deleterious(0) probably_damaging(0.997) TCGA-CZ-5454-01 17 61890626 61890626 A T DDX42 Missense_Mutation p.N572Y 0.36 deleterious(0) probably_damaging(1) TCGA-CZ-5454-01 19 47969387 47969387 G A SLC8A2 Missense_Mutation p.R92C 0.11 deleterious(0) probably_damaging(1) TCGA-CZ-5454-01 19 56243947 56243947 C A NLRP9 Missense_Mutation p.R417M 0.42 deleterious(0) probably_damaging(0.976) TCGA-CZ-5454-01 1 160395201 160395201 G A VANGL2 3'UTR 0.53 TCGA-CZ-5454-01 1 236925981 236925981 T C ACTN2 3'UTR 0.14 TCGA-CZ-5454-01 1 35457934 35457934 A G ZMYM6 Missense_Mutation p.S683P 0.04 tolerated(0.97) benign(0.002) TCGA-CZ-5454-01 20 33437795 33437795 C T GGT7 Silent p.P598P 0.16 TCGA-CZ-5454-01 20 62373331 62373331 T A SLC2A4RG Silent p.S167S 0.43 TCGA-CZ-5454-01 22 20755601 20755601 T C ZNF74 Silent p.H94H 0.11 TCGA-CZ-5454-01 22 39713525 39713525 G A RPL3 Silent p.F102F 0.32 TCGA-CZ-5454-01 3 119528965 119528965 G A NR1I2 Silent p.E124E 0.42 TCGA-CZ-5454-01 3 197748373 197748373 C A LMLN Silent p.S511S 0.41 TCGA-CZ-5454-01 3 52696199 52696199 C A PBRM1 Nonsense_Mutation p.E160* 0.61 TCGA-CZ-5454-01 4 174216550 174216550 A G GALNT7 Missense_Mutation p.H253R 0.37 deleterious(0) probably_damaging(0.959) TCGA-CZ-5454-01 4 39297338 39297338 C T RFC1 Silent p.G951G 0.41 TCGA-CZ-5454-01 5 94876456 94876456 T G TTC37 Silent p.R161R 0.35 TCGA-CZ-5454-01 6 100957131 100957131 T C ASCC3 3'UTR 0.27 TCGA-CZ-5454-01 6 111913024 111913024 T A TRAF3IP2 Missense_Mutation p.E89V 0.41 deleterious(0.05) possibly_damaging(0.721) TCGA-CZ-5454-01 6 131904255 131904256 - T ARG1 Frame_Shift_Ins p.G215Rfs*26 0.30 TCGA-CZ-5454-01 6 163985686 163985686 C T QKI Intron 0.29 TCGA-CZ-5454-01 7 23309735 23309735 C T GPNMB Missense_Mutation p.T469I 0.59 deleterious(0) probably_damaging(0.999) TCGA-CZ-5454-01 8 64099319 64099319 G A YTHDF3 Silent p.P249P 0.39 TCGA-CZ-5454-01 8 80549106 80549106 G A STMN2 Missense_Mutation p.R30H 0.34 tolerated(0.64) benign(0.034) TCGA-CZ-5454-01 8 90796294 90796294 G T RIPK2 Missense_Mutation p.S319I 0.34 tolerated(0.09) benign(0.088) TCGA-CZ-5454-01 9 101984847 101984847 G C SEC61B Missense_Mutation p.G8A 0.55 tolerated(0.7) benign(0) TCGA-CZ-5454-01 X 128880233 128880233 A G XPNPEP2 Missense_Mutation p.K107R 0.10 tolerated(0.53) benign(0.005) TCGA-CZ-5455-01 10 60128517 60128517 G C UBE2D1 Missense_Mutation p.A146P 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-CZ-5455-01 10 61835851 61835851 A T ANK3 Silent p.S1596S 0.19 TCGA-CZ-5455-01 11 55038079 55038079 C G TRIM48 3'UTR 0.25 TCGA-CZ-5455-01 11 59190140 59190140 A G OR5A2 Missense_Mutation p.V96A 0.22 tolerated(0.28) benign(0.006) TCGA-CZ-5455-01 11 67207622 67207622 C T CORO1B Missense_Mutation p.R325Q 0.38 deleterious(0) possibly_damaging(0.765) TCGA-CZ-5455-01 12 118506261 118506261 C T VSIG10 Silent p.K496K 0.26 TCGA-CZ-5455-01 12 62902133 62902133 A G MON2 Missense_Mutation p.N286S 0.04 tolerated(0.19) benign(0.199) TCGA-CZ-5455-01 12 7076363 7076363 T C PHB2 Missense_Mutation p.I254V 0.19 deleterious(0.02) benign(0.403) TCGA-CZ-5455-01 13 109365062 109365062 G A MYO16 Missense_Mutation p.G94R 0.12 deleterious(0) probably_damaging(1) TCGA-CZ-5455-01 14 64556348 64556348 C G SYNE2 Missense_Mutation p.I3909M 0.31 probably_damaging(0.999) TCGA-CZ-5455-01 15 101601411 101601411 T C LRRK1 Missense_Mutation p.M1572T 0.13 deleterious(0.03) benign(0.017) TCGA-CZ-5455-01 15 48725074 48725074 C T FBN1 Missense_Mutation p.R2243K 0.20 possibly_damaging(0.889) TCGA-CZ-5455-01 17 40556892 40556892 C A PTRF Missense_Mutation p.R329L 0.28 deleterious(0) probably_damaging(0.969) TCGA-CZ-5455-01 17 57078981 57078981 G A TRIM37 Silent p.V930V 0.28 TCGA-CZ-5455-01 17 7130834 7130834 A G DVL2 Missense_Mutation p.S418P 0.10 deleterious(0.03) probably_damaging(0.953) TCGA-CZ-5455-01 17 73752790 73752790 G A ITGB4 Missense_Mutation p.A1635T 0.24 tolerated(0.19) benign(0.002) TCGA-CZ-5455-01 18 47095827 47095827 C T LIPG Silent p.L160L 0.21 TCGA-CZ-5455-01 19 7518545 7518545 G A ARHGEF18 Missense_Mutation p.R495Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-CZ-5455-01 1 109838957 109838957 C G MYBPHL Missense_Mutation p.D256H 0.27 deleterious(0.02) possibly_damaging(0.635) TCGA-CZ-5455-01 1 167829063 167829063 A - ADCY10 Frame_Shift_Del p.F626Lfs*2 0.22 TCGA-CZ-5455-01 1 207651381 207651381 C A CR2 Missense_Mutation p.H1018Q 0.19 tolerated(0.18) benign(0.012) TCGA-CZ-5455-01 1 20827336 20827336 A G MUL1 Silent p.C302C 0.11 TCGA-CZ-5455-01 1 26650663 26650663 C T AIM1L Missense_Mutation p.D699N 0.32 deleterious(0) benign(0.328) TCGA-CZ-5455-01 1 32279601 32279601 G A SPOCD1 Missense_Mutation p.S445F 0.19 tolerated(0.12) benign(0.017) TCGA-CZ-5455-01 20 3127798 3127798 C A FASTKD5 Missense_Mutation p.G640V 0.14 tolerated(0.21) benign(0.004) TCGA-CZ-5455-01 20 43945464 43945464 C T RBPJL Silent p.F473F 0.23 TCGA-CZ-5455-01 20 48253875 48253875 A - B4GALT5 Intron 0.17 TCGA-CZ-5455-01 21 43161776 43161776 T C RIPK4 Missense_Mutation p.K526R 0.10 tolerated(1) benign(0.017) TCGA-CZ-5455-01 22 30688345 30688345 G A TBC1D10A 3'UTR 0.58 TCGA-CZ-5455-01 2 131976031 131976031 G T POTEE Missense_Mutation p.G19V 0.25 deleterious_low_confidence(0) benign(0) TCGA-CZ-5455-01 2 158178112 158178112 C T ERMN Missense_Mutation p.D189N 0.30 tolerated(0.11) benign(0.021) TCGA-CZ-5455-01 2 207656676 207656676 A C FASTKD2 3'UTR 0.28 TCGA-CZ-5455-01 2 97544165 97544165 A G FAM178B Silent p.T614T 0.11 TCGA-CZ-5455-01 3 10328471 10328471 A G GHRL Missense_Mutation p.I84T 0.09 deleterious(0) probably_damaging(0.909) TCGA-CZ-5455-01 3 52637555 52637555 G A PBRM1 Nonsense_Mutation p.R921* 0.25 TCGA-CZ-5455-01 4 183714250 183714250 A T TENM3 Missense_Mutation p.Y2142F 0.27 tolerated(0.61) possibly_damaging(0.636) TCGA-CZ-5455-01 4 69056948 69056948 G C TMPRSS11BNL 3'UTR 0.23 TCGA-CZ-5455-01 5 131662990 131662990 G C SLC22A4 Missense_Mutation p.R282P 0.17 deleterious(0) possibly_damaging(0.84) TCGA-CZ-5455-01 5 138717582 138717582 G T SLC23A1 Silent p.R103R 0.14 TCGA-CZ-5455-01 5 140741742 140741742 G A PCDHGB2 Silent p.E680E 0.30 TCGA-CZ-5455-01 5 1443351 1443351 T C SLC6A3 5'UTR 0.21 TCGA-CZ-5455-01 6 106553680 106553680 C A PRDM1 Missense_Mutation p.L549I 0.17 deleterious(0) probably_damaging(0.999) TCGA-CZ-5455-01 6 170892196 170892196 T C PDCD2 Missense_Mutation p.M203V 0.24 tolerated(0.32) benign(0) TCGA-CZ-5455-01 6 26246994 26246994 A G HIST1H4G Missense_Mutation p.V71A 0.14 deleterious(0.02) possibly_damaging(0.458) TCGA-CZ-5455-01 6 2689126 2689126 G T MYLK4 Silent p.V100V 0.22 TCGA-CZ-5455-01 6 43492326 43492326 T C XPO5 Silent p.E1120E 0.21 TCGA-CZ-5455-01 7 132470404 132470404 T A CHCHD3 Silent p.G226G 0.25 TCGA-CZ-5455-01 7 76959608 76959608 T G GSAP Missense_Mutation p.H541P 0.23 tolerated(0.06) benign(0.318) TCGA-CZ-5455-01 7 94991745 94991745 T C PON3 Missense_Mutation p.I279V 0.27 tolerated(0.37) benign(0.005) TCGA-CZ-5455-01 8 22777758 22777758 T C PEBP4 Missense_Mutation p.N66S 0.23 tolerated(0.24) benign(0.029) TCGA-CZ-5455-01 8 42841800 42841800 A G HOOK3 Missense_Mutation p.E465G 0.20 deleterious(0) benign(0.253) TCGA-CZ-5455-01 9 135926210 135926210 A G GTF3C5 Missense_Mutation p.I205V 0.12 deleterious(0.04) probably_damaging(0.97) TCGA-CZ-5455-01 9 140509445 140509445 C A ARRDC1 Nonsense_Mutation p.Y410* 0.19 TCGA-CZ-5455-01 X 77254041 77254041 A T ATP7A Missense_Mutation p.N468I 0.51 tolerated(0.18) benign(0.035) TCGA-CZ-5456-01 10 13325777 13325777 G T PHYH Missense_Mutation p.H247Q 0.19 deleterious(0.01) possibly_damaging(0.771) TCGA-CZ-5456-01 10 32582523 32582529 CTGACCA - EPC1 Frame_Shift_Del p.G151Sfs*12 0.24 TCGA-CZ-5456-01 11 104897592 104897592 C A CASP1 Missense_Mutation p.D365Y 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-CZ-5456-01 11 121466463 121466463 C A SORL1 Silent p.R1501R 0.08 TCGA-CZ-5456-01 11 30255400 30255400 T A FSHB 3'UTR 0.24 TCGA-CZ-5456-01 11 63669700 63669700 C A MARK2 Silent p.R378R 0.06 TCGA-CZ-5456-01 11 9091015 9091015 T A SCUBE2 Missense_Mutation p.H182L 0.25 tolerated(0.1) possibly_damaging(0.713) TCGA-CZ-5456-01 11 9161237 9161237 A G DENND5A Missense_Mutation p.V1282A 0.18 tolerated(0.1) benign(0.066) TCGA-CZ-5456-01 12 10854562 10854562 T A YBX3 Missense_Mutation p.K350N 0.11 deleterious(0.01) benign(0.039) TCGA-CZ-5456-01 12 132401540 132401540 G T ULK1 Silent p.A705A 0.08 TCGA-CZ-5456-01 12 20890093 20890093 A T SLCO1C1 Nonsense_Mutation p.R479* 0.06 TCGA-CZ-5456-01 13 100543598 100543598 G A CLYBL Missense_Mutation p.M318I 0.17 deleterious(0) possibly_damaging(0.782) TCGA-CZ-5456-01 13 111144511 111144511 T C COL4A2 Silent p.A1183A 0.21 TCGA-CZ-5456-01 14 95669872 95669872 A G CLMN Missense_Mutation p.L605P 0.20 tolerated_low_confidence(0.16) benign(0.017) TCGA-CZ-5456-01 15 31260141 31260141 T C MTMR10 Missense_Mutation p.K183E 0.27 tolerated(0.53) benign(0.003) TCGA-CZ-5456-01 15 65114788 65114788 G A PIF1 Missense_Mutation p.P194S 0.21 deleterious(0.03) benign(0.293) TCGA-CZ-5456-01 15 78485853 78485853 G - ACSBG1 Frame_Shift_Del p.L220* 0.48 TCGA-CZ-5456-01 15 80762712 80762712 G T ARNT2 Missense_Mutation p.M116I 0.24 tolerated(0.18) benign(0.072) TCGA-CZ-5456-01 15 89744770 89744770 A G ABHD2 3'UTR 0.29 TCGA-CZ-5456-01 16 14711480 14711480 G A PARN Nonsense_Mutation p.Q119* 0.33 TCGA-CZ-5456-01 16 2160596 2160596 G T PKD1 Silent p.T1524T 0.14 TCGA-CZ-5456-01 17 26655746 26655750 ATTCA - IFT20 Frame_Shift_Del p.E136* 0.13 TCGA-CZ-5456-01 17 34235676 34235676 C A AC015849.16 RNA 0.33 TCGA-CZ-5456-01 17 47036046 47036046 T C GIP 3'UTR 0.18 TCGA-CZ-5456-01 17 48193386 48193386 G A SAMD14 Nonsense_Mutation p.R190* 0.08 TCGA-CZ-5456-01 17 5331651 5331651 G A RPAIN 3'UTR 0.14 TCGA-CZ-5456-01 18 55399206 55399206 C G ATP8B1 Intron 0.11 TCGA-CZ-5456-01 19 10087919 10087919 C T COL5A3 Missense_Mutation p.D1092N 0.07 possibly_damaging(0.679) TCGA-CZ-5456-01 19 10370469 10370469 G T MRPL4 Missense_Mutation p.A306S 0.13 tolerated_low_confidence(0.14) benign(0.364) TCGA-CZ-5456-01 19 36221724 36221724 C G KMT2B Missense_Mutation p.A1798G 0.36 probably_damaging(0.935) TCGA-CZ-5456-01 19 54080261 54080261 T G ZNF331 Missense_Mutation p.H149Q 0.25 deleterious(0.02) probably_damaging(0.975) TCGA-CZ-5456-01 19 5613494 5613494 C T SAFB2 Silent p.L196L 0.23 TCGA-CZ-5456-01 19 57752278 57752278 G T ZNF805 Missense_Mutation p.D7Y 0.19 tolerated(0.41) benign(0.011) TCGA-CZ-5456-01 1 115260583 115260583 T C CSDE1 3'UTR 0.20 TCGA-CZ-5456-01 1 120458045 120458045 A G NOTCH2 Missense_Mutation p.S2434P 0.18 deleterious(0) probably_damaging(0.997) TCGA-CZ-5456-01 1 145558859 145558859 G A ANKRD35 Missense_Mutation p.A160T 0.15 deleterious(0) probably_damaging(0.948) TCGA-CZ-5456-01 1 152188024 152188024 C G HRNR Silent p.S2027S 0.13 TCGA-CZ-5456-01 1 152283596 152283596 G T FLG Missense_Mutation p.Q1256K 0.16 benign(0.149) TCGA-CZ-5456-01 1 160091025 160091025 A T ATP1A2 Missense_Mutation p.Q54L 0.14 deleterious(0.02) benign(0.051) TCGA-CZ-5456-01 1 169701065 169701065 G A SELE Missense_Mutation p.S147F 0.35 deleterious(0.03) possibly_damaging(0.869) TCGA-CZ-5456-01 1 34383875 34383875 C A CSMD2 Missense_Mutation p.R207L 0.09 deleterious(0.01) probably_damaging(0.971) TCGA-CZ-5456-01 1 43296726 43296726 C A ERMAP Silent p.R125R 0.04 TCGA-CZ-5456-01 1 43613612 43613612 A T FAM183A 5'Flank 0.34 TCGA-CZ-5456-01 1 54509109 54509109 G A TMEM59 Silent p.S160S 0.30 TCGA-CZ-5456-01 1 54509110 54509110 C T TMEM59 Missense_Mutation p.S160N 0.30 tolerated(0.06) benign(0.347) TCGA-CZ-5456-01 1 7797034 7797034 C T CAMTA1 Missense_Mutation p.P1103S 0.18 deleterious(0) possibly_damaging(0.765) TCGA-CZ-5456-01 20 61299368 61299368 A T SLCO4A1 Missense_Mutation p.Y548F 0.37 tolerated(0.08) benign(0.11) TCGA-CZ-5456-01 2 145154158 145154158 C T ZEB2 Missense_Mutation p.G963E 0.11 tolerated(0.88) benign(0.298) TCGA-CZ-5456-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.33 deleterious(0) probably_damaging(1) TCGA-CZ-5456-01 2 178936671 178936671 G A PDE11A Missense_Mutation p.P165L 0.28 deleterious(0) possibly_damaging(0.908) TCGA-CZ-5456-01 2 179701647 179701647 T C CCDC141 Silent p.T1433T 0.06 TCGA-CZ-5456-01 2 241724433 241724433 G C KIF1A Missense_Mutation p.D231E 0.30 deleterious(0.02) benign(0.022) TCGA-CZ-5456-01 3 47164273 47164273 G C SETD2 Nonsense_Mutation p.S618* 0.37 TCGA-CZ-5456-01 3 52588818 52588818 G - PBRM1 Frame_Shift_Del p.Q1404Sfs*28 0.46 TCGA-CZ-5456-01 3 53777118 53777118 G T CACNA1D Silent p.G984G 0.45 TCGA-CZ-5456-01 4 1343562 1343562 G A UVSSA Missense_Mutation p.V117M 0.15 deleterious(0) probably_damaging(0.974) TCGA-CZ-5456-01 4 170190302 170190302 G A SH3RF1 Missense_Mutation p.A21V 0.32 tolerated(0.06) benign(0.143) TCGA-CZ-5456-01 4 176556193 176556193 C - GPM6A Frame_Shift_Del p.V234Ffs*9 0.27 TCGA-CZ-5456-01 4 20512749 20512749 T C SLIT2 Silent p.S349S 0.17 TCGA-CZ-5456-01 4 53303 53303 C T ZNF595 5'UTR 0.08 TCGA-CZ-5456-01 4 57349375 57349375 C T SRP72 Missense_Mutation p.S299F 0.32 deleterious(0) benign(0.434) TCGA-CZ-5456-01 4 7780467 7780467 A G AFAP1 Intron 0.08 TCGA-CZ-5456-01 4 85738690 85738690 T - WDFY3 Frame_Shift_Del p.K581Sfs*10 0.23 TCGA-CZ-5456-01 5 137488441 137488441 G A BRD8 Silent p.H862H 0.05 TCGA-CZ-5456-01 5 169026150 169026150 A C SPDL1 Missense_Mutation p.K437N 0.68 deleterious(0.01) probably_damaging(0.973) TCGA-CZ-5456-01 5 179201812 179201812 C G MAML1 Silent p.S995S 0.39 TCGA-CZ-5456-01 5 66479930 66479930 A C CD180 Silent p.T247T 0.05 TCGA-CZ-5456-01 6 134210544 134210544 C A TCF21 Silent p.T3T 0.08 TCGA-CZ-5456-01 6 159660926 159660926 C T FNDC1 Missense_Mutation p.H1520Y 0.06 tolerated(0.81) benign(0.027) TCGA-CZ-5456-01 6 163149205 163149205 A C PACRG 5'UTR 0.24 TCGA-CZ-5456-01 6 47567071 47567071 T A CD2AP Missense_Mutation p.F437I 0.19 tolerated(0.4) benign(0.001) TCGA-CZ-5456-01 6 79944289 79944289 C A HMGN3 5'UTR 0.24 TCGA-CZ-5456-01 7 115624530 115624530 A T TFEC 5'UTR 0.42 TCGA-CZ-5456-01 7 124493109 124493109 C T POT1 Silent p.E262E 0.36 TCGA-CZ-5456-01 7 131122679 131122679 A - MKLN1 Frame_Shift_Del p.I366Lfs*9 0.20 TCGA-CZ-5456-01 7 142563322 142563322 G A EPHB6 Missense_Mutation p.V347I 0.32 tolerated(0.7) benign(0.002) TCGA-CZ-5456-01 7 94051214 94051214 A G COL1A2 Missense_Mutation p.M785V 0.38 unknown(0) TCGA-CZ-5456-01 7 99668418 99668418 G T ZNF3 3'UTR 0.39 TCGA-CZ-5456-01 8 126036702 126036702 C T KIAA0196 3'UTR 0.29 TCGA-CZ-5456-01 8 17409424 17409424 G A SLC7A2 Silent p.A368A 0.37 TCGA-CZ-5456-01 8 26722260 26722260 G C ADRA1A Missense_Mutation p.T76S 0.45 tolerated(1) benign(0.264) TCGA-CZ-5456-01 8 57354177 57354177 G C PENK Missense_Mutation p.S153C 0.14 deleterious(0.01) possibly_damaging(0.765) TCGA-CZ-5456-01 8 61757864 61757864 C T CHD7 Silent p.S1702S 0.20 TCGA-CZ-5456-01 8 67342089 67342089 G T RRS1 Missense_Mutation p.K241N 0.43 deleterious(0.03) benign(0.135) TCGA-CZ-5456-01 8 81577290 81577298 ATCACTGTA - ZNF704 In_Frame_Del p.Y227_D229del 0.25 TCGA-CZ-5456-01 9 134357757 134357757 G A PRRC2B Splice_Site p.X1662_splice 0.17 TCGA-CZ-5456-01 9 135202159 135202159 C A SETX Missense_Mutation p.G1609V 0.20 tolerated(0.21) benign(0.028) TCGA-CZ-5456-01 9 96860800 96860800 T A PTPDC1 Missense_Mutation p.L649Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-CZ-5456-01 X 129306194 129306194 C T RAB33A Missense_Mutation p.T53I 0.64 deleterious(0) possibly_damaging(0.905) TCGA-CZ-5456-01 X 150842545 150842545 G T PASD1 Missense_Mutation p.D688Y 0.16 deleterious(0) probably_damaging(0.934) TCGA-CZ-5456-01 X 41203543 41203544 - T DDX3X Frame_Shift_Ins p.G307Wfs*42 0.52 TCGA-CZ-5456-01 X 70147708 70147708 A C SLC7A3 Missense_Mutation p.I328S 0.09 tolerated(0.06) benign(0.021) TCGA-CZ-5457-01 10 33218782 33218799 TGGATCTGAGTAATATCC - ITGB1 In_Frame_Del p.D110_Q115del 0.13 TCGA-CZ-5457-01 10 71912161 71912161 A G SAR1A 3'UTR 0.28 TCGA-CZ-5457-01 10 75676303 75676303 G C PLAU Missense_Mutation p.E426Q 0.24 tolerated(0.2) benign(0.009) TCGA-CZ-5457-01 10 93604754 93604754 T C TNKS2 Missense_Mutation p.L713P 0.23 deleterious(0) probably_damaging(1) TCGA-CZ-5457-01 11 10820873 10820873 A G EIF4G2 Missense_Mutation p.L808P 0.34 tolerated(0.06) probably_damaging(0.909) TCGA-CZ-5457-01 11 30033589 30033589 C A KCNA4 Missense_Mutation p.D213Y 0.22 deleterious(0) probably_damaging(1) TCGA-CZ-5457-01 12 102471203 102471203 C - NUP37 Frame_Shift_Del p.E207Nfs*5 0.20 TCGA-CZ-5457-01 12 109290797 109290797 A G DAO Missense_Mutation p.M210V 0.18 tolerated(1) benign(0.001) TCGA-CZ-5457-01 12 121660766 121660766 G A P2RX4 Silent p.R164R 0.33 TCGA-CZ-5457-01 12 15087884 15087884 T C ERP27 Missense_Mutation p.Q80R 0.25 tolerated(0.11) benign(0.011) TCGA-CZ-5457-01 12 2675675 2675675 C G CACNA1C Missense_Mutation p.F532L 0.21 tolerated(1) benign(0.004) TCGA-CZ-5457-01 12 48388230 48388230 C T COL2A1 Missense_Mutation p.E265K 0.20 unknown(0) TCGA-CZ-5457-01 12 49436587 49436587 G C KMT2D Missense_Mutation p.L1907V 0.19 benign(0.205) TCGA-CZ-5457-01 12 52470991 52470991 G C C12orf44 3'UTR 0.17 TCGA-CZ-5457-01 14 24785139 24785139 C T LTB4R Silent p.H94H 0.16 TCGA-CZ-5457-01 14 77916095 77916095 C T VIPAS39 Missense_Mutation p.G115D 0.39 tolerated(0.17) probably_damaging(0.991) TCGA-CZ-5457-01 15 101112168 101112168 A - LINS Frame_Shift_Del p.F442Sfs*2 0.24 TCGA-CZ-5457-01 15 39881491 39881491 C A THBS1 Missense_Mutation p.P621H 0.24 deleterious(0) probably_damaging(1) TCGA-CZ-5457-01 15 43577100 43577100 C T TGM7 Missense_Mutation p.A306T 0.18 deleterious(0) probably_damaging(0.976) TCGA-CZ-5457-01 15 56924221 56924221 A C ZNF280D Silent p.V805V 0.19 TCGA-CZ-5457-01 15 80253460 80253460 T A BCL2A1 Missense_Mutation p.E159D 0.22 tolerated(0.55) benign(0.001) TCGA-CZ-5457-01 16 14355166 14355166 C G MKL2 Missense_Mutation p.N1005K 0.08 deleterious(0.02) benign(0.419) TCGA-CZ-5457-01 16 1616280 1616280 G A IFT140 Missense_Mutation p.P595S 0.13 deleterious(0.03) benign(0.15) TCGA-CZ-5457-01 16 20810063 20810063 C T ERI2 Missense_Mutation p.M353I 0.14 tolerated(0.48) benign(0.001) TCGA-CZ-5457-01 16 48595382 48595382 A - N4BP1 Frame_Shift_Del p.F391Sfs*49 0.20 TCGA-CZ-5457-01 16 66973125 66973125 T C CES2 Missense_Mutation p.L160P 0.20 tolerated(0.16) benign(0.101) TCGA-CZ-5457-01 16 68721619 68721619 C T CDH3 Missense_Mutation p.T592M 0.13 tolerated(0.06) benign(0.002) TCGA-CZ-5457-01 17 2323880 2323880 T G METTL16 Missense_Mutation p.K358T 0.16 deleterious(0.01) probably_damaging(0.954) TCGA-CZ-5457-01 17 27045162 27045162 A G RAB34 Missense_Mutation p.F42L 0.08 tolerated_low_confidence(0.67) benign(0) TCGA-CZ-5457-01 17 27613674 27613674 G T NUFIP2 Silent p.I446I 0.20 TCGA-CZ-5457-01 17 48069215 48069215 A T DLX3 Missense_Mutation p.F177Y 0.35 deleterious(0) possibly_damaging(0.787) TCGA-CZ-5457-01 17 72522164 72522164 G T CD300LB Silent p.S68S 0.15 TCGA-CZ-5457-01 17 73058235 73058235 C G KCTD2 Silent p.S219S 0.33 TCGA-CZ-5457-01 17 74468019 74468019 A T RHBDF2 Missense_Mutation p.V756E 0.16 deleterious(0) possibly_damaging(0.901) TCGA-CZ-5457-01 17 79652641 79652641 C T HGS Missense_Mutation p.A15V 0.45 deleterious(0.04) benign(0.426) TCGA-CZ-5457-01 17 79846407 79846407 C A ALYREF Missense_Mutation p.R197S 0.17 deleterious(0.04) probably_damaging(0.965) TCGA-CZ-5457-01 19 12903494 12903494 C T JUNB Silent p.L303L 0.55 TCGA-CZ-5457-01 19 18546478 18546478 G A ISYNA1 Silent p.I383I 0.13 TCGA-CZ-5457-01 19 2234235 2234235 G T PLEKHJ1 Missense_Mutation p.F78L 0.33 deleterious(0.05) possibly_damaging(0.491) TCGA-CZ-5457-01 19 36640752 36640752 C T CAPNS1 3'UTR 0.28 TCGA-CZ-5457-01 19 39034251 39034251 C A RYR1 Missense_Mutation p.A3953D 0.14 benign(0.018) TCGA-CZ-5457-01 19 39423075 39423075 C A MRPS12 Missense_Mutation p.P51H 0.19 deleterious(0.02) probably_damaging(0.983) TCGA-CZ-5457-01 19 57325755 57325755 T C PEG3 Missense_Mutation p.E1352G 0.19 tolerated(0.18) benign(0.012) TCGA-CZ-5457-01 19 6444201 6444201 A T SLC25A23 Missense_Mutation p.Y395N 0.41 deleterious(0) probably_damaging(0.948) TCGA-CZ-5457-01 19 8595162 8595162 C T MYO1F Missense_Mutation p.R749Q 0.11 tolerated(0.38) benign(0.041) TCGA-CZ-5457-01 1 112308358 112308358 G A DDX20 Splice_Site p.X438_splice 0.24 TCGA-CZ-5457-01 1 151688472 151688472 G A CELF3 Silent p.L9L 0.21 TCGA-CZ-5457-01 1 166944470 166944470 G A ILDR2 Silent p.F12F 0.25 TCGA-CZ-5457-01 1 168698362 168698362 C T DPT Nonsense_Mutation p.W17* 0.26 TCGA-CZ-5457-01 1 200587322 200587322 G C KIF14 Missense_Mutation p.S177C 0.24 deleterious(0.03) benign(0.033) TCGA-CZ-5457-01 1 204128614 204128614 T A REN Missense_Mutation p.Q201L 0.25 tolerated(0.71) benign(0.013) TCGA-CZ-5457-01 1 3564112 3564112 G A WRAP73 Nonsense_Mutation p.Q28* 0.21 TCGA-CZ-5457-01 1 6704634 6704634 C T DNAJC11 Missense_Mutation p.V361I 0.21 tolerated(0.08) benign(0.098) TCGA-CZ-5457-01 20 35547877 35547877 T C SAMHD1 Missense_Mutation p.N248D 0.20 deleterious(0.03) probably_damaging(0.925) TCGA-CZ-5457-01 20 44207862 44207862 C A WFDC8 Missense_Mutation p.G9W 0.04 tolerated(0.11) benign(0.001) TCGA-CZ-5457-01 20 45140775 45140775 C T ZNF334 5'UTR 0.19 TCGA-CZ-5457-01 22 29121349 29121349 A C CHEK2 Missense_Mutation p.V152G 0.26 deleterious(0.02) possibly_damaging(0.642) TCGA-CZ-5457-01 22 39928457 39928457 T C RPS19BP1 Missense_Mutation p.I42V 0.19 tolerated(0.34) benign(0.001) TCGA-CZ-5457-01 2 164468066 164468066 C T FIGN Silent p.S92S 0.18 TCGA-CZ-5457-01 2 182542705 182542705 T C NEUROD1 Missense_Mutation p.K295E 0.31 deleterious(0) benign(0.206) TCGA-CZ-5457-01 2 207413075 207413075 G T ADAM23 Silent p.V288V 0.29 TCGA-CZ-5457-01 2 212576841 212576841 A T ERBB4 Missense_Mutation p.I353N 0.31 deleterious(0) probably_damaging(1) TCGA-CZ-5457-01 2 220333895 220333895 T G SPEG Missense_Mutation p.M1170R 0.36 probably_damaging(0.991) TCGA-CZ-5457-01 2 225360600 225360600 G T CUL3 Missense_Mutation p.F597L 0.12 deleterious(0.05) benign(0.026) TCGA-CZ-5457-01 2 234468567 234468567 G A USP40 Nonsense_Mutation p.R103* 0.30 TCGA-CZ-5457-01 2 37501595 37501595 A C PRKD3 Silent p.V540V 0.13 TCGA-CZ-5457-01 3 46937259 46937259 T - PTH1R Frame_Shift_Del p.A72Rfs*118 0.19 TCGA-CZ-5457-01 3 52741704 52741704 T G SPCS1 Missense_Mutation p.L129R 0.45 deleterious(0) probably_damaging(0.997) TCGA-CZ-5457-01 4 164393649 164393649 T G TKTL2 Missense_Mutation p.N413T 0.27 deleterious(0.03) possibly_damaging(0.843) TCGA-CZ-5457-01 4 55956163 55956163 C T KDR Missense_Mutation p.R1051Q 0.26 deleterious(0) probably_damaging(1) TCGA-CZ-5457-01 4 99997942 99997942 T A ADH5 Missense_Mutation p.K159N 0.27 deleterious(0) benign(0.193) TCGA-CZ-5457-01 5 115327884 115327884 T A AQPEP Missense_Mutation p.D390E 0.30 tolerated(0.42) possibly_damaging(0.549) TCGA-CZ-5457-01 5 127670883 127670883 T A FBN2 Missense_Mutation p.M1318L 0.20 tolerated(0.38) benign(0.001) TCGA-CZ-5457-01 5 142150382 142150382 G T ARHGAP26 Missense_Mutation p.R19L 0.31 deleterious(0) benign(0.25) TCGA-CZ-5457-01 5 14485224 14485224 A T TRIO Missense_Mutation p.K2235I 0.28 benign(0.356) TCGA-CZ-5457-01 5 153429206 153429206 T G MFAP3 5'UTR 0.28 TCGA-CZ-5457-01 5 169145692 169145692 G C DOCK2 Missense_Mutation p.D722H 0.27 deleterious(0.03) possibly_damaging(0.701) TCGA-CZ-5457-01 5 45262062 45262062 G C HCN1 Missense_Mutation p.D878E 0.09 tolerated_low_confidence(0.76) benign(0.001) TCGA-CZ-5457-01 5 80057496 80057496 A C MSH3 Missense_Mutation p.K632T 0.15 deleterious(0) probably_damaging(0.995) TCGA-CZ-5457-01 6 157469827 157469827 T A ARID1B Missense_Mutation p.M874K 0.21 possibly_damaging(0.548) TCGA-CZ-5457-01 6 158924983 158924983 T A TULP4 Missense_Mutation p.W1430R 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CZ-5457-01 6 43188337 43188337 G A CUL9 Silent p.K2141K 0.14 TCGA-CZ-5457-01 7 2698601 2698601 C T TTYH3 Silent p.P484P 0.34 TCGA-CZ-5457-01 7 37902995 37902997 TAG - NME8 Splice_Site p.X130_splice 0.26 TCGA-CZ-5457-01 7 44185256 44185256 C T GCK Missense_Mutation p.D366N 0.12 tolerated(0.3) benign(0.181) TCGA-CZ-5457-01 7 6776759 6776760 GC T PMS2CL RNA 0.20 TCGA-CZ-5457-01 8 117859599 117859599 A - RAD21 3'UTR 0.12 TCGA-CZ-5457-01 8 135521972 135521972 C - ZFAT Frame_Shift_Del p.A1128Pfs*2 0.18 TCGA-CZ-5457-01 9 107367525 107367525 G A OR13C2 Silent p.N128N 0.32 TCGA-CZ-5457-01 9 134067639 134067640 TC - NUP214 Frame_Shift_Del p.S1207Wfs*17 0.27 TCGA-CZ-5457-01 9 139563044 139563044 C G EGFL7 Missense_Mutation p.P39R 0.50 tolerated(0.1) possibly_damaging(0.873) TCGA-CZ-5457-01 X 144909435 144909435 G A TMEM257 Silent p.T80T 0.06 TCGA-CZ-5457-01 X 76875909 76875909 C A ATRX Missense_Mutation p.R1742S 0.42 probably_damaging(0.999) TCGA-CZ-5458-01 11 134244955 134244955 G T GLB1L2 3'UTR 0.17 TCGA-CZ-5458-01 11 65480531 65480531 T G KAT5 Splice_Site p.X128_splice 0.32 TCGA-CZ-5458-01 11 65622863 65622863 G - CFL1 Frame_Shift_Del p.L149Wfs*81 0.28 TCGA-CZ-5458-01 11 68181311 68181311 G T LRP5 Silent p.L886L 0.17 TCGA-CZ-5458-01 11 7063767 7063767 C G NLRP14 Silent p.V170V 0.04 TCGA-CZ-5458-01 12 133197854 133197854 T C P2RX2 Missense_Mutation p.Y307H 0.09 deleterious(0) probably_damaging(1) TCGA-CZ-5458-01 12 56748290 56748290 T C STAT2 Missense_Mutation p.R248G 0.22 tolerated(1) benign(0) TCGA-CZ-5458-01 12 57345981 57345981 C T RDH16 Silent p.S262S 0.38 TCGA-CZ-5458-01 14 81259370 81259370 T C CEP128 Missense_Mutation p.T432A 0.19 tolerated(0.37) benign(0.008) TCGA-CZ-5458-01 15 33873834 33873834 C T RYR3 Silent p.Y521Y 0.09 TCGA-CZ-5458-01 15 52844224 52844224 C T ARPP19 Silent p.P82P 0.26 TCGA-CZ-5458-01 16 3283545 3283545 C G ZNF200 Missense_Mutation p.V71L 0.06 deleterious_low_confidence(0.01) benign(0.272) TCGA-CZ-5458-01 16 532561 532561 G A RAB11FIP3 Missense_Mutation p.E314K 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-CZ-5458-01 16 58564211 58564211 T C CNOT1 Missense_Mutation p.K2073R 0.24 tolerated(0.06) benign(0.082) TCGA-CZ-5458-01 16 89724745 89724745 G C SPATA33 Missense_Mutation p.D42H 0.25 deleterious(0.03) probably_damaging(0.923) TCGA-CZ-5458-01 17 60813347 60813347 T A MARCH10 Nonsense_Mutation p.K628* 0.25 TCGA-CZ-5458-01 18 74962847 74962847 T C GALR1 Missense_Mutation p.F115L 0.11 tolerated(0.07) benign(0.115) TCGA-CZ-5458-01 19 43690641 43690641 C A PSG5 5'UTR 0.14 TCGA-CZ-5458-01 19 55142960 55142960 C T LILRB1 Missense_Mutation p.P27L 0.11 deleterious(0.04) benign(0.033) TCGA-CZ-5458-01 1 158644146 158644146 A T SPTA1 Missense_Mutation p.H441Q 0.22 deleterious(0.02) probably_damaging(1) TCGA-CZ-5458-01 1 171673510 171673510 T - VAMP4 3'UTR 0.22 TCGA-CZ-5458-01 1 197411309 197411309 A C CRB1 Missense_Mutation p.I1298L 0.24 tolerated(0.17) benign(0.126) TCGA-CZ-5458-01 1 205275383 205275383 G T NUAK2 Missense_Mutation p.T208K 0.28 deleterious(0) probably_damaging(0.999) TCGA-CZ-5458-01 1 237167534 237167534 C G MT1HL1 Missense_Mutation p.G47R 0.13 deleterious(0.03) unknown(0) TCGA-CZ-5458-01 1 55518062 55518062 A G PCSK9 Missense_Mutation p.D212G 0.12 deleterious(0.03) probably_damaging(0.99) TCGA-CZ-5458-01 22 50885797 50885797 G A SBF1 Missense_Mutation p.P1846L 0.13 deleterious(0) probably_damaging(0.925) TCGA-CZ-5458-01 2 219532832 219532832 G A RNF25 Missense_Mutation p.P86L 0.23 deleterious(0) probably_damaging(1) TCGA-CZ-5458-01 2 99232913 99232913 C G UNC50 Missense_Mutation p.T187R 0.22 tolerated(0.29) benign(0.054) TCGA-CZ-5458-01 3 10188240 10188240 T A VHL Missense_Mutation p.L128H 0.31 deleterious(0) probably_damaging(1) TCGA-CZ-5458-01 3 112300127 112300127 A G SLC35A5 Missense_Mutation p.E388G 0.20 deleterious(0) benign(0.371) TCGA-CZ-5458-01 3 185643314 185643314 G C TRA2B Missense_Mutation p.R91G 0.55 tolerated(0.05) unknown(0) TCGA-CZ-5458-01 3 47037324 47037324 C G NBEAL2 Silent p.A673A 0.23 TCGA-CZ-5458-01 5 114951736 114951736 A - TMED7 3'UTR 0.11 TCGA-CZ-5458-01 5 137848455 137848455 G A ETF1 Nonsense_Mutation p.Q244* 0.43 TCGA-CZ-5458-01 5 138210719 138210719 G T LRRTM2 5'UTR 0.26 TCGA-CZ-5458-01 6 108093542 108093542 G C SCML4 5'UTR 0.23 TCGA-CZ-5458-01 6 64436568 64436568 A G EYS Missense_Mutation p.S2693P 0.21 deleterious(0.02) probably_damaging(0.932) TCGA-CZ-5458-01 7 157018150 157018150 G A UBE3C Missense_Mutation p.G717D 0.24 tolerated(0.08) benign(0.012) TCGA-CZ-5458-01 7 33055308 33055308 G A NT5C3A Silent p.L295L 0.27 TCGA-CZ-5458-01 8 110471954 110471954 T C PKHD1L1 Missense_Mutation p.F2379L 0.28 tolerated(0.13) benign(0.085) TCGA-CZ-5458-01 8 29994916 29994916 T G LEPROTL1 Silent p.T136T 0.17 TCGA-CZ-5458-01 8 63831061 63831061 A T NKAIN3 Missense_Mutation p.E174V 0.25 deleterious(0) probably_damaging(0.968) TCGA-CZ-5458-01 9 139701460 139701460 T C CCDC183 Silent p.T476T 0.09 TCGA-CZ-5458-01 9 90387883 90387883 C A CTSL3P RNA 0.23 TCGA-CZ-5458-01 X 77150869 77150869 G T MAGT1 Silent p.T45T 0.64 TCGA-CZ-5459-01 11 102645920 102645920 T A MMP10 Missense_Mutation p.K355N 0.05 deleterious(0) probably_damaging(0.992) TCGA-CZ-5459-01 11 118922276 118922276 C T HYOU1 Missense_Mutation p.R467Q 0.22 deleterious(0) probably_damaging(0.969) TCGA-CZ-5459-01 11 124310727 124310727 A - OR8B8 Frame_Shift_Del p.F85Lfs*3 0.21 TCGA-CZ-5459-01 11 19372436 19372436 T C NAV2 5'UTR 0.27 TCGA-CZ-5459-01 11 55339616 55339616 A T OR4C16 Missense_Mutation p.N5Y 0.29 deleterious(0) benign(0.379) TCGA-CZ-5459-01 11 5625935 5625935 C A TRIM6 Intron 0.17 TCGA-CZ-5459-01 11 65988247 65988247 C T PACS1 Missense_Mutation p.P395L 0.18 tolerated(0.07) probably_damaging(0.992) TCGA-CZ-5459-01 11 69063609 69063609 G C MYEOV Missense_Mutation p.R231T 0.18 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-CZ-5459-01 11 763505 763505 C A TALDO1 Missense_Mutation p.P208H 0.24 deleterious(0) probably_damaging(0.916) TCGA-CZ-5459-01 12 120128175 120128175 G A CIT Silent p.P1989P 0.31 TCGA-CZ-5459-01 12 121972425 121972429 ACCAA - KDM2B Frame_Shift_Del p.W251Pfs*33 0.37 TCGA-CZ-5459-01 12 123034395 123034395 A G KNTC1 Missense_Mutation p.Q357R 0.28 tolerated(0.09) possibly_damaging(0.901) TCGA-CZ-5459-01 12 53691896 53691896 T G PFDN5 Missense_Mutation p.I117S 0.29 deleterious(0) probably_damaging(0.974) TCGA-CZ-5459-01 12 88910211 88910211 G C KITLG Missense_Mutation p.F140L 0.33 deleterious(0.01) probably_damaging(0.961) TCGA-CZ-5459-01 13 101763549 101763549 C T NALCN Missense_Mutation p.G741R 0.08 tolerated(0.12) benign(0.259) TCGA-CZ-5459-01 14 21967473 21967473 C G METTL3 Missense_Mutation p.D499H 0.34 deleterious(0) probably_damaging(1) TCGA-CZ-5459-01 14 47600945 47600945 C T MDGA2 Translation_Start_Site p.M1? 0.31 tolerated_low_confidence(0.23) benign(0.003) TCGA-CZ-5459-01 14 52735094 52735094 G A PTGDR Missense_Mutation p.V188I 0.12 tolerated(0.19) benign(0.015) TCGA-CZ-5459-01 14 55531491 55531491 C A MAPK1IP1L 3'UTR 0.19 TCGA-CZ-5459-01 14 68047714 68047714 T A PLEKHH1 Silent p.S1081S 0.34 TCGA-CZ-5459-01 14 95058616 95058616 A T SERPINA5 3'UTR 0.38 TCGA-CZ-5459-01 15 39882215 39882215 C A THBS1 Missense_Mutation p.H712Q 0.22 tolerated(0.08) probably_damaging(0.997) TCGA-CZ-5459-01 15 43748191 43748191 G T TP53BP1 Nonsense_Mutation p.S872* 0.29 TCGA-CZ-5459-01 15 48718059 48718059 T G FBN1 Missense_Mutation p.I2403L 0.29 probably_damaging(0.994) TCGA-CZ-5459-01 15 52161517 52161517 C A TMOD3 Missense_Mutation p.A77E 0.35 deleterious(0.01) probably_damaging(0.973) TCGA-CZ-5459-01 15 80215117 80215117 T C C15orf37 Translation_Start_Site p.M1? 0.32 benign(0.092) TCGA-CZ-5459-01 16 4940260 4940260 T G PPL Silent p.L746L 0.28 TCGA-CZ-5459-01 16 4940261 4940261 A G PPL Missense_Mutation p.L746P 0.28 deleterious(0) probably_damaging(0.999) TCGA-CZ-5459-01 16 4940294 4940294 A G PPL Missense_Mutation p.F735S 0.25 deleterious(0) benign(0.11) TCGA-CZ-5459-01 16 56717289 56717289 T A MT1X Intron 0.20 TCGA-CZ-5459-01 16 69385482 69385482 A T TMED6 Missense_Mutation p.F59I 0.31 deleterious(0) possibly_damaging(0.904) TCGA-CZ-5459-01 16 71712811 71712811 G T PHLPP2 Missense_Mutation p.S372Y 0.26 tolerated(1) benign(0.075) TCGA-CZ-5459-01 17 18219366 18219366 A G SMCR8 Missense_Mutation p.N88S 0.37 deleterious(0) probably_damaging(0.999) TCGA-CZ-5459-01 17 34257695 34257695 T A RDM1 Missense_Mutation p.S13C 0.16 deleterious(0) possibly_damaging(0.896) TCGA-CZ-5459-01 17 38545832 38545832 G A TOP2A Missense_Mutation p.S1512F 0.32 tolerated_low_confidence(0.07) possibly_damaging(0.837) TCGA-CZ-5459-01 17 39021170 39021171 - T KRT12 Frame_Shift_Ins p.I232Nfs*39 0.43 TCGA-CZ-5459-01 17 40342212 40342212 A G GHDC Silent p.N455N 0.30 TCGA-CZ-5459-01 17 48540792 48540792 C A ACSF2 Missense_Mutation p.L309M 0.26 tolerated(0.09) probably_damaging(1) TCGA-CZ-5459-01 17 61613155 61613155 G A KCNH6 Silent p.A409A 0.29 TCGA-CZ-5459-01 17 62122827 62122827 T - ERN1 Frame_Shift_Del p.I849* 0.26 TCGA-CZ-5459-01 17 64059172 64059172 A T CEP112 Missense_Mutation p.V328D 0.32 deleterious(0.01) possibly_damaging(0.784) TCGA-CZ-5459-01 17 7163812 7163812 C T CLDN7 Missense_Mutation p.A173T 0.19 tolerated(0.11) benign(0.219) TCGA-CZ-5459-01 17 74042206 74042206 C T SRP68 Silent p.R404R 0.32 TCGA-CZ-5459-01 17 80194627 80194627 G C SLC16A3 Silent p.V82V 0.30 TCGA-CZ-5459-01 18 19032159 19032159 G A GREB1L Missense_Mutation p.M655I 0.35 tolerated(0.15) benign(0.149) TCGA-CZ-5459-01 18 19239274 19239274 A - ABHD3 Frame_Shift_Del p.I233Mfs*7 0.28 TCGA-CZ-5459-01 18 24496329 24496329 A G CHST9 Missense_Mutation p.V409A 0.26 deleterious(0) possibly_damaging(0.872) TCGA-CZ-5459-01 18 48422198 48422198 C T ME2 Missense_Mutation p.S3F 0.28 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-CZ-5459-01 19 23433128 23433128 T C ZNF724P 5'UTR 0.18 TCGA-CZ-5459-01 19 40519822 40519824 ATC - ZNF546 In_Frame_Del p.S216del 0.27 TCGA-CZ-5459-01 19 46511489 46511489 C T CCDC61 Missense_Mutation p.R161C 0.35 tolerated(0.08) probably_damaging(0.921) TCGA-CZ-5459-01 19 54189764 54189764 C T MIR519C RNA 0.23 TCGA-CZ-5459-01 19 57865150 57865150 C T ZNF304 Missense_Mutation p.L31F 0.30 deleterious(0) probably_damaging(0.999) TCGA-CZ-5459-01 19 6697533 6697533 C T C3 Missense_Mutation p.C873Y 0.38 deleterious(0) probably_damaging(1) TCGA-CZ-5459-01 1 155148492 155148492 A G TRIM46 Missense_Mutation p.T152A 0.11 tolerated(0.09) benign(0.16) TCGA-CZ-5459-01 1 155254427 155254427 C T HCN3 Missense_Mutation p.P323L 0.38 deleterious(0) benign(0.03) TCGA-CZ-5459-01 1 166845479 166845479 G A TADA1 5'UTR 0.38 TCGA-CZ-5459-01 1 169833584 169833584 A G SCYL3 Missense_Mutation p.L294P 0.28 deleterious(0) probably_damaging(0.999) TCGA-CZ-5459-01 1 173854993 173854993 C A ZBTB37 Missense_Mutation p.Q415K 0.36 deleterious(0.01) probably_damaging(0.975) TCGA-CZ-5459-01 1 205819199 205819199 A T PM20D1 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0.227) TCGA-CZ-5459-01 1 227171879 227171879 G A ADCK3 Silent p.L447L 0.28 TCGA-CZ-5459-01 1 227192738 227192738 A G CDC42BPA Silent p.P1609P 0.28 TCGA-CZ-5459-01 1 227751268 227751268 G T ZNF678 5'UTR 0.24 TCGA-CZ-5459-01 1 236761225 236761225 G A HEATR1 Missense_Mutation p.L186F 0.03 deleterious(0.01) probably_damaging(0.912) TCGA-CZ-5459-01 1 94655748 94655748 T C ARHGAP29 Intron 0.23 TCGA-CZ-5459-01 20 22562794 22562794 C T FOXA2 Silent p.P362P 0.28 TCGA-CZ-5459-01 20 35414908 35414908 C A SOGA1 Missense_Mutation p.A1656S 0.33 deleterious_low_confidence(0.03) benign(0.021) TCGA-CZ-5459-01 21 40559338 40559338 C A BRWD1 Missense_Mutation p.V2193F 0.31 deleterious_low_confidence(0.05) benign(0.278) TCGA-CZ-5459-01 21 45163648 45163649 TG - PDXK Frame_Shift_Del p.V98Afs*15 0.35 TCGA-CZ-5459-01 21 47633651 47633651 C T LSS Splice_Site p.X370_splice 0.07 TCGA-CZ-5459-01 22 24122848 24122848 G T MMP11 Nonsense_Mutation p.E188* 0.31 TCGA-CZ-5459-01 22 28504358 28504358 G T TTC28 Missense_Mutation p.T492N 0.32 tolerated(0.07) possibly_damaging(0.673) TCGA-CZ-5459-01 22 37469600 37469600 G A TMPRSS6 Silent p.N518N 0.36 TCGA-CZ-5459-01 2 165551694 165551694 T C COBLL1 Missense_Mutation p.I774M 0.31 deleterious(0) possibly_damaging(0.823) TCGA-CZ-5459-01 2 169707624 169707624 C A NOSTRIN Missense_Mutation p.Q278K 0.37 tolerated(0.36) benign(0.016) TCGA-CZ-5459-01 2 172725235 172725235 C A SLC25A12 Missense_Mutation p.K55N 0.32 tolerated(0.2) benign(0.002) TCGA-CZ-5459-01 2 179468956 179468956 C T TTN Missense_Mutation p.C18153Y 0.23 TCGA-CZ-5459-01 2 228419271 228419271 T A AGFG1 3'UTR 0.28 TCGA-CZ-5459-01 2 55071378 55071378 T C EML6 Missense_Mutation p.S348P 0.14 deleterious(0) possibly_damaging(0.812) TCGA-CZ-5459-01 2 95947697 95947697 C A PROM2 Missense_Mutation p.P526T 0.22 deleterious(0) probably_damaging(0.971) TCGA-CZ-5459-01 3 10188234 10188235 - T VHL Frame_Shift_Ins p.G127Wfs*5 0.38 TCGA-CZ-5459-01 3 129152727 129152727 A G MBD4 Silent p.L459L 0.50 TCGA-CZ-5459-01 3 180328319 180328319 T C TTC14 Missense_Mutation p.S768P 0.08 tolerated_low_confidence(0.46) unknown(0) TCGA-CZ-5459-01 3 47125791 47125791 A G SETD2 Missense_Mutation p.W1827R 0.38 deleterious(0) probably_damaging(0.999) TCGA-CZ-5459-01 4 120446851 120446851 C A PDE5A Splice_Site p.X545_splice 0.30 TCGA-CZ-5459-01 4 123274224 123274224 A T KIAA1109 Missense_Mutation p.N4672I 0.31 probably_damaging(1) TCGA-CZ-5459-01 4 1388536 1388536 G A CRIPAK Silent p.V79V 0.21 TCGA-CZ-5459-01 4 139966177 139966177 T C CCRN4L Missense_Mutation p.I282T 0.30 deleterious(0) benign(0.219) TCGA-CZ-5459-01 4 156268906 156268906 A G MAP9 3'UTR 0.32 TCGA-CZ-5459-01 4 186545257 186545257 G C SORBS2 Missense_Mutation p.I538M 0.27 tolerated(0.07) benign(0.22) TCGA-CZ-5459-01 4 26430436 26430436 A G RBPJ Missense_Mutation p.E294G 0.29 tolerated(0.1) possibly_damaging(0.451) TCGA-CZ-5459-01 4 43022413 43022413 C A GRXCR1 Missense_Mutation p.Q224K 0.04 deleterious(0.03) benign(0.217) TCGA-CZ-5459-01 4 83857207 83857207 G T LIN54 Missense_Mutation p.S591Y 0.30 deleterious(0) benign(0.406) TCGA-CZ-5459-01 5 102891795 102891795 A C NUDT12 Silent p.V267V 0.28 TCGA-CZ-5459-01 5 137222571 137222571 T A MYOT Silent p.T403T 0.29 TCGA-CZ-5459-01 5 138147874 138147874 G T CTNNA1 Silent p.V157V 0.26 TCGA-CZ-5459-01 5 141354483 141354483 C T RNF14 Missense_Mutation p.S90L 0.28 tolerated(0.36) benign(0.005) TCGA-CZ-5459-01 5 36136613 36136613 A G LMBRD2 Missense_Mutation p.L182P 0.28 deleterious(0) probably_damaging(0.997) TCGA-CZ-5459-01 5 37122589 37122589 A G C5orf42 Missense_Mutation p.L2933P 0.28 tolerated(0.08) benign(0.409) TCGA-CZ-5459-01 5 39383077 39383077 A G DAB2 Silent p.S328S 0.29 TCGA-CZ-5459-01 6 161523807 161523807 T C MAP3K4 Silent p.S1284S 0.31 TCGA-CZ-5459-01 6 31848507 31848507 C T EHMT2 Missense_Mutation p.R1132Q 0.36 deleterious(0.03) possibly_damaging(0.824) TCGA-CZ-5459-01 6 32096783 32096783 C G FKBPL Missense_Mutation p.A259P 0.24 deleterious(0) probably_damaging(1) TCGA-CZ-5459-01 6 43493658 43493658 A G XPO5 Silent p.D995D 0.27 TCGA-CZ-5459-01 6 56417328 56417328 T G DST Missense_Mutation p.Q2798P 0.26 probably_damaging(0.999) TCGA-CZ-5459-01 7 101747717 101747717 A G CUX1 Missense_Mutation p.N181D 0.29 deleterious(0.02) unknown(0) TCGA-CZ-5459-01 7 11076624 11076624 G C PHF14 Missense_Mutation p.R629P 0.32 deleterious(0) possibly_damaging(0.835) TCGA-CZ-5459-01 7 143657717 143657717 C T OR2F1 Silent p.Y218Y 0.31 TCGA-CZ-5459-01 7 35144349 35144349 T A DPY19L2P1 RNA 0.37 TCGA-CZ-5459-01 7 37780555 37780555 T - GPR141 Frame_Shift_Del p.F188Lfs*3 0.26 TCGA-CZ-5459-01 7 43916855 43916855 G T URGCP Missense_Mutation p.A736D 0.29 tolerated(0.37) probably_damaging(0.929) TCGA-CZ-5459-01 8 106814187 106814187 T G ZFPM2 Missense_Mutation p.I626S 0.34 tolerated(0.61) benign(0.086) TCGA-CZ-5459-01 8 125562076 125562076 T A NDUFB9 Silent p.G161G 0.29 TCGA-CZ-5459-01 8 145584608 145584608 T C SLC52A2 Missense_Mutation p.F424S 0.12 deleterious(0) probably_damaging(0.999) TCGA-CZ-5459-01 8 21563505 21563505 C T GFRA2 Silent p.T281T 0.28 TCGA-CZ-5459-01 8 68178355 68178355 G A ARFGEF1 Missense_Mutation p.S670L 0.21 deleterious(0.05) probably_damaging(0.947) TCGA-CZ-5459-01 9 125639776 125639776 A - RC3H2 Frame_Shift_Del p.F433Lfs*13 0.30 TCGA-CZ-5459-01 9 131904851 131904851 T C PPP2R4 Intron 0.10 TCGA-CZ-5459-01 9 33941709 33941709 G T UBAP2 Missense_Mutation p.H623N 0.28 tolerated(0.11) possibly_damaging(0.554) TCGA-CZ-5459-01 9 7013979 7013979 G A KDM4C Silent p.K720K 0.30 TCGA-CZ-5459-01 X 118724240 118724240 T G NKRF Missense_Mutation p.Q398P 0.56 deleterious(0.02) probably_damaging(0.979) TCGA-CZ-5460-01 10 113932775 113932775 T C GPAM Missense_Mutation p.I204V 0.26 tolerated(0.33) benign(0.036) TCGA-CZ-5460-01 10 7217995 7217995 T A SFMBT2 Missense_Mutation p.E647D 0.25 tolerated(1) benign(0.015) TCGA-CZ-5460-01 10 7217996 7217996 T G SFMBT2 Missense_Mutation p.E647A 0.25 deleterious(0.03) benign(0.043) TCGA-CZ-5460-01 10 92679944 92679944 C A ANKRD1 Missense_Mutation p.E63D 0.26 deleterious(0.04) possibly_damaging(0.633) TCGA-CZ-5460-01 11 64522190 64522190 G A PYGM Missense_Mutation p.T325M 0.10 tolerated(0.06) benign(0.019) TCGA-CZ-5460-01 11 66102565 66102565 G A RIN1 Silent p.P235P 0.17 TCGA-CZ-5460-01 11 72012970 72012970 G A CLPB Silent p.G432G 0.25 TCGA-CZ-5460-01 12 11138584 11138584 C T TAS2R50 Silent p.L292L 0.23 TCGA-CZ-5460-01 12 113810479 113810479 C T PLBD2 Missense_Mutation p.T137M 0.11 deleterious(0.03) probably_damaging(0.986) TCGA-CZ-5460-01 12 118481141 118481141 T A WSB2 Missense_Mutation p.N75I 0.24 tolerated(0.19) benign(0.01) TCGA-CZ-5460-01 12 118481144 118481144 T A WSB2 Missense_Mutation p.K74I 0.24 deleterious(0.02) benign(0.243) TCGA-CZ-5460-01 12 121204169 121204169 A G SPPL3 Missense_Mutation p.L327P 0.10 deleterious(0) probably_damaging(0.934) TCGA-CZ-5460-01 12 2595320 2595320 C T CACNA1C Missense_Mutation p.H270Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-CZ-5460-01 12 46245726 46245726 G - ARID2 Frame_Shift_Del p.G1274Efs*21 0.35 TCGA-CZ-5460-01 12 71033004 71033004 C T PTPRR Missense_Mutation p.C645Y 0.39 tolerated(0.49) benign(0.021) TCGA-CZ-5460-01 14 20296164 20296164 A G OR4N2 Missense_Mutation p.K186R 0.14 tolerated(0.27) benign(0.052) TCGA-CZ-5460-01 14 20916148 20916148 A G OSGEP Silent p.T236T 0.26 TCGA-CZ-5460-01 14 94756558 94756560 TGA - SERPINA10 In_Frame_Del p.I124del 0.38 TCGA-CZ-5460-01 14 94844824 94844824 G C SERPINA1 Missense_Mutation p.L407V 0.30 deleterious(0) probably_damaging(0.922) TCGA-CZ-5460-01 15 45434244 45434244 G A DUOX1 Missense_Mutation p.D586N 0.19 tolerated(0.08) benign(0.32) TCGA-CZ-5460-01 15 55838992 55838992 A G PYGO1 Silent p.N163N 0.31 TCGA-CZ-5460-01 16 70180077 70180077 T C PDPR Silent p.S636S 0.30 TCGA-CZ-5460-01 16 77775489 77775489 T G NUDT7 Missense_Mutation p.L120W 0.54 deleterious(0.02) benign(0.151) TCGA-CZ-5460-01 17 16456102 16456102 A T ZNF287 Missense_Mutation p.Y452N 0.38 deleterious(0) probably_damaging(0.999) TCGA-CZ-5460-01 17 57334552 57334552 C T GDPD1 Missense_Mutation p.T146I 0.32 tolerated(1) benign(0.02) TCGA-CZ-5460-01 17 74568746 74568746 C T ST6GALNAC2 Silent p.L214L 0.10 TCGA-CZ-5460-01 17 8658873 8658873 C T SPDYE4 Silent p.S150S 0.36 TCGA-CZ-5460-01 18 34289232 34289232 A T FHOD3 Missense_Mutation p.K629I 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CZ-5460-01 19 21909967 21909967 A - ZNF100 Frame_Shift_Del p.Y383Tfs*67 0.33 TCGA-CZ-5460-01 19 41932579 41932579 G A B3GNT8 Silent p.Y35Y 0.45 TCGA-CZ-5460-01 19 51471380 51471380 A G KLK6 Intron 0.22 TCGA-CZ-5460-01 1 110921820 110921820 A T SLC16A4 Missense_Mutation p.C229S 0.10 tolerated(0.57) benign(0.007) TCGA-CZ-5460-01 1 180166433 180166433 C A QSOX1 3'UTR 0.26 TCGA-CZ-5460-01 1 212180740 212180740 T C INTS7 Missense_Mutation p.H203R 0.10 deleterious(0) probably_damaging(0.991) TCGA-CZ-5460-01 1 225266907 225266907 A T DNAH14 Splice_Site p.X743_splice 0.30 TCGA-CZ-5460-01 1 32950945 32950945 G T ZBTB8B Missense_Mutation p.D472Y 0.39 deleterious(0) possibly_damaging(0.701) TCGA-CZ-5460-01 1 40726535 40726535 C T ZMPSTE24 Missense_Mutation p.H50Y 0.22 deleterious(0.03) benign(0.024) TCGA-CZ-5460-01 1 89236126 89236126 A T PKN2 Missense_Mutation p.Q199L 0.41 deleterious(0.01) benign(0.108) TCGA-CZ-5460-01 21 40568695 40568695 T C BRWD1 Silent p.R2100R 0.08 TCGA-CZ-5460-01 21 46945815 46945815 G A SLC19A1 Silent p.N403N 0.10 TCGA-CZ-5460-01 21 47983730 47983730 C A DIP2A Intron 0.19 TCGA-CZ-5460-01 21 47983731 47983731 A T DIP2A Intron 0.18 TCGA-CZ-5460-01 2 103068553 103068553 A G IL18RAP Missense_Mutation p.Q571R 0.31 tolerated(0.66) benign(0.002) TCGA-CZ-5460-01 2 32422862 32422862 C T SLC30A6 Missense_Mutation p.A251V 0.29 tolerated(0.36) benign(0.087) TCGA-CZ-5460-01 2 55074650 55074650 G A EML6 Silent p.L359L 0.09 TCGA-CZ-5460-01 3 10191593 10191593 A T VHL Nonsense_Mutation p.K196* 0.27 TCGA-CZ-5460-01 3 122002936 122002936 C T CASR Missense_Mutation p.T722I 0.41 deleterious(0.01) probably_damaging(0.968) TCGA-CZ-5460-01 3 195426332 195426332 G A MIR570 RNA 0.09 TCGA-CZ-5460-01 3 37343778 37343778 C A GOLGA4 Missense_Mutation p.Q419K 0.52 probably_damaging(0.998) TCGA-CZ-5460-01 3 47139521 47139523 AGG - SETD2 Nonsense_Mutation p.Y1688_L1689delins* 0.60 TCGA-CZ-5460-01 3 52584765 52584766 - TT PBRM1 Frame_Shift_Ins p.Q1453Nfs*37 0.56 TCGA-CZ-5460-01 4 143067033 143067034 - T INPP4B Frame_Shift_Ins p.E561Gfs*18 0.48 TCGA-CZ-5460-01 4 152577469 152577469 T C FAM160A1 Silent p.I879I 0.37 TCGA-CZ-5460-01 4 155527857 155527857 C T FGG Missense_Mutation p.G377S 0.18 deleterious(0) probably_damaging(0.976) TCGA-CZ-5460-01 4 178357480 178357480 T A AGA Silent p.G216G 0.22 TCGA-CZ-5460-01 5 1409924 1409924 T C SLC6A3 Missense_Mutation p.E437G 0.09 deleterious(0.04) benign(0.208) TCGA-CZ-5460-01 5 151179550 151179550 G A G3BP1 Missense_Mutation p.G315E 0.32 tolerated(0.28) benign(0.005) TCGA-CZ-5460-01 5 64082386 64082386 G A CWC27 Silent p.R177R 0.35 TCGA-CZ-5460-01 6 24719011 24719011 G T C6orf62 5'UTR 0.26 TCGA-CZ-5460-01 6 41130893 41130893 A G TREM2 5'UTR 0.16 TCGA-CZ-5460-01 6 90604723 90604723 A G GJA10 Missense_Mutation p.Y179C 0.28 deleterious(0) probably_damaging(1) TCGA-CZ-5460-01 7 151960100 151960100 C T KMT2C Splice_Site p.X433_splice 0.22 TCGA-CZ-5460-01 7 17379447 17379448 - C AHR Frame_Shift_Ins p.Q667Pfs*7 0.26 TCGA-CZ-5460-01 7 19812275 19812275 G T TMEM196 Silent p.S15S 0.20 TCGA-CZ-5460-01 7 5925855 5925855 C A OCM 3'UTR 0.33 TCGA-CZ-5460-01 9 107573110 107573110 C A ABCA1 Missense_Mutation p.W1382C 0.18 deleterious(0.01) probably_damaging(0.967) TCGA-CZ-5460-01 9 21440985 21440985 G A IFNA1 Missense_Mutation p.S160N 0.15 deleterious(0.02) possibly_damaging(0.467) TCGA-CZ-5460-01 9 37744613 37744613 A T FRMPD1 Missense_Mutation p.S862C 0.19 deleterious(0.02) possibly_damaging(0.838) TCGA-CZ-5460-01 9 79438564 79438564 A G PRUNE2 Missense_Mutation p.V247A 0.27 deleterious(0) probably_damaging(0.993) TCGA-CZ-5460-01 9 79438565 79438565 C G PRUNE2 Missense_Mutation p.V247L 0.28 deleterious(0.04) probably_damaging(0.951) TCGA-CZ-5460-01 9 95997112 95997112 C T WNK2 Silent p.P366P 0.14 TCGA-CZ-5460-01 X 10153207 10153207 A G CLCN4 Silent p.R45R 0.09 TCGA-CZ-5460-01 X 151283746 151283746 G T RP11-1007I13.4 RNA 0.38 TCGA-CZ-5461-01 10 14941677 14941677 A G SUV39H2 Missense_Mutation p.N330S 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-CZ-5461-01 10 27822869 27822869 G C RAB18 Missense_Mutation p.V131L 0.35 deleterious(0.01) benign(0.073) TCGA-CZ-5461-01 10 46121548 46121548 C T ZFAND4 Missense_Mutation p.G575R 0.32 tolerated(1) benign(0) TCGA-CZ-5461-01 10 51829431 51829431 A G FAM21A Missense_Mutation p.N84S 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-CZ-5461-01 10 72631655 72631655 T C SGPL1 Missense_Mutation p.V324A 0.33 tolerated(0.42) benign(0.026) TCGA-CZ-5461-01 11 118484605 118484605 G T PHLDB1 Missense_Mutation p.M18I 0.11 tolerated(0.4) benign(0) TCGA-CZ-5461-01 11 125891274 125891274 T A CDON Missense_Mutation p.E73V 0.28 deleterious(0.03) possibly_damaging(0.811) TCGA-CZ-5461-01 11 61048292 61048292 C G VWCE Missense_Mutation p.E401D 0.42 tolerated(0.39) benign(0.015) TCGA-CZ-5461-01 11 83544667 83544667 T A DLG2 Missense_Mutation p.Q571L 0.26 deleterious(0) benign(0.087) TCGA-CZ-5461-01 12 10959049 10959049 T C TAS2R8 Missense_Mutation p.I177M 0.37 tolerated(0.31) benign(0.038) TCGA-CZ-5461-01 12 130847573 130847573 G A PIWIL1 Missense_Mutation p.M693I 0.37 deleterious(0.03) benign(0.02) TCGA-CZ-5461-01 12 48185052 48185052 C G HDAC7 Missense_Mutation p.G658A 0.38 deleterious(0) probably_damaging(0.997) TCGA-CZ-5461-01 12 56428493 56428493 A - IKZF4 Frame_Shift_Del p.E379Gfs*64 0.25 TCGA-CZ-5461-01 13 108861063 108861063 C T LIG4 Missense_Mutation p.V852I 0.32 tolerated(0.18) benign(0.005) TCGA-CZ-5461-01 13 37679100 37679100 T C CSNK1A1L Silent p.E98E 0.29 TCGA-CZ-5461-01 14 101350371 101350371 C T RTL1 Nonsense_Mutation p.W252* 0.15 TCGA-CZ-5461-01 14 102452696 102452696 G A DYNC1H1 Missense_Mutation p.G712S 0.24 benign(0.019) TCGA-CZ-5461-01 14 106091423 106091423 C - IGHG4 Frame_Shift_Del p.W157Cfs*38 0.40 TCGA-CZ-5461-01 14 59113616 59113616 T C DACT1 Missense_Mutation p.S759P 0.08 deleterious(0) probably_damaging(0.999) TCGA-CZ-5461-01 15 52098676 52098676 C T TMOD2 Nonsense_Mutation p.R327* 0.30 TCGA-CZ-5461-01 15 59186051 59186051 C A SLTM Silent p.S539S 0.05 TCGA-CZ-5461-01 15 88423631 88423631 C T NTRK3 Missense_Mutation p.R735H 0.18 deleterious(0) probably_damaging(1) TCGA-CZ-5461-01 15 99512702 99512702 C T PGPEP1L Missense_Mutation p.R108H 0.47 tolerated(0.11) benign(0.014) TCGA-CZ-5461-01 16 18820753 18820753 G A SMG1 3'UTR 0.05 TCGA-CZ-5461-01 16 20451155 20451155 T C ACSM5 Missense_Mutation p.Y524H 0.21 deleterious(0) probably_damaging(0.968) TCGA-CZ-5461-01 16 66950224 66950224 C T CDH16 Missense_Mutation p.V80M 0.37 deleterious(0.03) benign(0.126) TCGA-CZ-5461-01 16 72158692 72158692 C A PMFBP1 Nonsense_Mutation p.E855* 0.39 TCGA-CZ-5461-01 16 84328656 84328656 C A WFDC1 Missense_Mutation p.H27N 0.17 tolerated(0.32) benign(0.01) TCGA-CZ-5461-01 17 15965052 15965052 C A NCOR1 Missense_Mutation p.R1848S 0.38 probably_damaging(0.989) TCGA-CZ-5461-01 17 2318624 2318624 A G AC006435.1 Missense_Mutation p.S10P 0.09 unknown(0) TCGA-CZ-5461-01 17 28434869 28434869 G C EFCAB5 Missense_Mutation p.V1447L 0.03 deleterious(0.03) possibly_damaging(0.728) TCGA-CZ-5461-01 17 3144184 3144184 T C OR1D4 RNA 0.44 TCGA-CZ-5461-01 17 33884519 33884519 G A SLFN14 Missense_Mutation p.S188L 0.24 tolerated(0.69) benign(0.006) TCGA-CZ-5461-01 17 34935726 34935726 G T GGNBP2 Silent p.L299L 0.25 TCGA-CZ-5461-01 17 40639358 40639358 C T ATP6V0A1 Silent p.S339S 0.31 TCGA-CZ-5461-01 17 41343513 41343513 C T NBR1 Missense_Mutation p.H330Y 0.28 tolerated(0.54) probably_damaging(0.98) TCGA-CZ-5461-01 18 19093876 19093876 C A GREB1L Silent p.V1610V 0.11 TCGA-CZ-5461-01 18 44122812 44122812 G A LOXHD1 Missense_Mutation p.T98I 0.32 tolerated(1) benign(0.173) TCGA-CZ-5461-01 19 36832152 36832152 T C ZFP14 Silent p.R192R 0.38 TCGA-CZ-5461-01 19 39028524 39028524 G C RYR1 Missense_Mutation p.E3871D 0.41 benign(0) TCGA-CZ-5461-01 19 48260339 48260339 G T GLTSCR2 3'Flank 0.52 TCGA-CZ-5461-01 19 49912460 49912460 G T CCDC155 Nonsense_Mutation p.E356* 0.17 TCGA-CZ-5461-01 19 51559915 51559915 C T KLK13 Missense_Mutation p.V255I 0.10 tolerated(0.17) benign(0.011) TCGA-CZ-5461-01 19 57642541 57642541 G A USP29 Missense_Mutation p.G833E 0.11 deleterious(0) probably_damaging(1) TCGA-CZ-5461-01 1 109794802 109794802 A T CELSR2 Missense_Mutation p.N701Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-CZ-5461-01 1 146656103 146656103 A - FMO5 3'Flank 0.20 TCGA-CZ-5461-01 1 152784984 152784984 C A LCE1B Missense_Mutation p.P21H 0.09 deleterious_low_confidence(0) unknown(0) TCGA-CZ-5461-01 1 153659728 153659728 C T NPR1 Missense_Mutation p.S663L 0.18 deleterious(0) probably_damaging(1) TCGA-CZ-5461-01 1 222860966 222860966 G A AIDA Silent p.F108F 0.07 TCGA-CZ-5461-01 1 235887360 235887360 T - LYST Frame_Shift_Del p.R3095Efs*37 0.09 TCGA-CZ-5461-01 1 39893209 39893209 A T MACF1 Missense_Mutation p.T3405S 0.37 probably_damaging(0.999) TCGA-CZ-5461-01 21 34142136 34142136 G A PAXBP1 Missense_Mutation p.S154L 0.30 tolerated(0.4) benign(0.292) TCGA-CZ-5461-01 2 187464952 187464952 C A ITGAV Intron 0.06 TCGA-CZ-5461-01 2 201997729 201997729 A G CFLAR Intron 0.06 TCGA-CZ-5461-01 2 209051784 209051784 G A C2orf80 Intron 0.33 TCGA-CZ-5461-01 2 21256255 21256255 A G APOB Missense_Mutation p.L347P 0.04 probably_damaging(0.966) TCGA-CZ-5461-01 2 218935328 218935328 C A RUFY4 5'UTR 0.33 TCGA-CZ-5461-01 2 219447710 219447712 ATC TT RQCD1 Frame_Shift_Del p.Y74Ffs*9 0.25 TCGA-CZ-5461-01 2 26717855 26717855 C T OTOF Silent p.K284K 0.18 TCGA-CZ-5461-01 2 75893178 75893178 A G GCFC2 Missense_Mutation p.V702A 0.32 deleterious(0) benign(0.156) TCGA-CZ-5461-01 3 158390257 158390257 G A LXN Missense_Mutation p.P4L 0.09 tolerated(0.07) possibly_damaging(0.612) TCGA-CZ-5461-01 3 47144880 47144880 G A SETD2 Missense_Mutation p.R1625C 0.48 deleterious(0) probably_damaging(0.961) TCGA-CZ-5461-01 3 48682160 48682160 G T CELSR3 Missense_Mutation p.L2692M 0.16 tolerated(0.12) probably_damaging(0.936) TCGA-CZ-5461-01 3 52712615 52712615 T C PBRM1 Splice_Site p.X47_splice 0.45 TCGA-CZ-5461-01 4 106601204 106601204 G T ARHGEF38 3'UTR 0.10 TCGA-CZ-5461-01 4 160279330 160279330 A G RAPGEF2 3'UTR 0.11 TCGA-CZ-5461-01 4 84379580 84379580 C A MRPS18C Missense_Mutation p.Q78K 0.26 tolerated(0.17) probably_damaging(0.991) TCGA-CZ-5461-01 5 126774247 126774247 T C MEGF10 Missense_Mutation p.Y741H 0.31 tolerated(0.34) probably_damaging(0.914) TCGA-CZ-5461-01 5 180477199 180477199 A C BTNL9 Missense_Mutation p.H189P 0.12 tolerated(0.15) benign(0.03) TCGA-CZ-5461-01 5 39137734 39137737 TTTC - FYB Frame_Shift_Del p.E504Rfs*6 0.11 TCGA-CZ-5461-01 5 83402565 83402565 C A EDIL3 Nonsense_Mutation p.G185* 0.31 TCGA-CZ-5461-01 6 152565703 152565703 T C SYNE1 Missense_Mutation p.Q6554R 0.33 benign(0.118) TCGA-CZ-5461-01 6 55933843 55933843 C A COL21A1 Splice_Site p.X697_splice 0.21 TCGA-CZ-5461-01 6 80744856 80744856 A C TTK Missense_Mutation p.D590A 0.38 deleterious(0.03) possibly_damaging(0.711) TCGA-CZ-5461-01 7 72732707 72732707 T A TRIM50 Missense_Mutation p.K243M 0.31 deleterious(0) possibly_damaging(0.606) TCGA-CZ-5461-01 8 101146397 101146398 - T FBXO43 Frame_Shift_Ins p.Y624Ifs*3 0.26 TCGA-CZ-5461-01 8 110376848 110376848 T A PKHD1L1 Missense_Mutation p.L49Q 0.04 deleterious(0) probably_damaging(0.995) TCGA-CZ-5461-01 8 134107431 134107431 C A TG Silent p.V2461V 0.28 TCGA-CZ-5461-01 8 144695067 144695067 C T TSTA3 3'UTR 0.24 TCGA-CZ-5461-01 8 57228627 57228627 C G SDR16C5 Missense_Mutation p.A94P 0.24 tolerated(0.06) probably_damaging(0.983) TCGA-CZ-5461-01 8 95952145 95952145 G T TP53INP1 Missense_Mutation p.P139H 0.23 tolerated(0.5) benign(0.003) TCGA-CZ-5461-01 8 96272706 96272706 G T C8orf37 Missense_Mutation p.L100I 0.21 tolerated(0.42) benign(0.061) TCGA-CZ-5461-01 9 104048510 104048510 G T LPPR1 Missense_Mutation p.R126I 0.21 deleterious(0) possibly_damaging(0.897) TCGA-CZ-5461-01 X 133551239 133551239 G C PHF6 Missense_Mutation p.C292S 0.08 deleterious(0) probably_damaging(0.999) TCGA-CZ-5461-01 X 50053811 50053811 G T CCNB3 Missense_Mutation p.W881L 0.65 tolerated(0.16) benign(0.015) TCGA-CZ-5461-01 Y 2709666 2709666 A G RPS4Y1 Translation_Start_Site p.M1? 0.21 deleterious(0.03) benign(0.079) TCGA-CZ-5462-01 10 11797428 11797428 C G ECHDC3 Missense_Mutation p.H138D 0.23 deleterious(0.04) probably_damaging(0.976) TCGA-CZ-5462-01 10 125526488 125526488 C T CPXM2 Splice_Site p.X493_splice 0.14 TCGA-CZ-5462-01 10 81702178 81702178 G A SFTPD Silent p.G133G 0.24 TCGA-CZ-5462-01 11 102221673 102221673 A G BIRC2 Missense_Mutation p.R332G 0.22 tolerated(0.06) possibly_damaging(0.843) TCGA-CZ-5462-01 11 117099049 117099049 C A PCSK7 Silent p.P162P 0.08 TCGA-CZ-5462-01 11 18750477 18750477 G A PTPN5 3'UTR 0.12 TCGA-CZ-5462-01 11 60671329 60671329 A T PRPF19 Silent p.S8S 0.15 TCGA-CZ-5462-01 11 61081631 61081631 T A DDB1 Silent p.G547G 0.20 TCGA-CZ-5462-01 11 61081632 61081632 C T DDB1 Missense_Mutation p.G547E 0.20 tolerated(0.12) benign(0.001) TCGA-CZ-5462-01 11 64674220 64674220 A G ATG2A Missense_Mutation p.L967P 0.09 deleterious(0) possibly_damaging(0.757) TCGA-CZ-5462-01 11 70017025 70017025 G A ANO1 Missense_Mutation p.A744T 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-CZ-5462-01 12 123983195 123983202 GGTCTGCC AA RILPL1 In_Frame_Del p.E230_A231del 0.42 TCGA-CZ-5462-01 12 48137448 48137448 T C RAPGEF3 Missense_Mutation p.I564V 0.27 tolerated(1) benign(0.078) TCGA-CZ-5462-01 13 114514719 114514719 G A TMEM255B Missense_Mutation p.R275H 0.29 tolerated(0.5) benign(0.002) TCGA-CZ-5462-01 14 39502467 39502467 T - SEC23A Frame_Shift_Del p.K758Nfs*22 0.15 TCGA-CZ-5462-01 14 71514655 71514655 A C PCNX Missense_Mutation p.E1431A 0.23 deleterious(0) probably_damaging(0.996) TCGA-CZ-5462-01 15 43527691 43527691 A G TGM5 Missense_Mutation p.F564L 0.18 tolerated(0.62) possibly_damaging(0.903) TCGA-CZ-5462-01 15 58925453 58925453 G T ADAM10 Missense_Mutation p.P373H 0.20 deleterious(0) probably_damaging(0.949) TCGA-CZ-5462-01 15 66010225 66010243 AAATGCCTCTTGGATTTCC - DENND4A Frame_Shift_Del p.L560Ffs*9 0.18 TCGA-CZ-5462-01 15 75648720 75648720 G A MAN2C1 Silent p.A953A 0.15 TCGA-CZ-5462-01 15 77406364 77406364 C T PEAK1 3'UTR 0.10 TCGA-CZ-5462-01 15 78526760 78526760 G A ACSBG1 Silent p.S28S 0.19 TCGA-CZ-5462-01 16 46741538 46741538 T G MYLK3 3'UTR 0.25 TCGA-CZ-5462-01 16 89349043 89349043 C - ANKRD11 Frame_Shift_Del p.V1303Sfs*15 0.20 TCGA-CZ-5462-01 17 3563239 3563239 C A CTNS Missense_Mutation p.L314M 0.24 deleterious(0.01) possibly_damaging(0.883) TCGA-CZ-5462-01 17 50149723 50149723 C T CA10 Missense_Mutation p.G31D 0.25 tolerated(0.9) benign(0.05) TCGA-CZ-5462-01 17 78014007 78014007 G T CCDC40 Nonsense_Mutation p.G164* 0.17 TCGA-CZ-5462-01 18 32919802 32919802 T A ZNF24 Missense_Mutation p.R187W 0.20 deleterious(0) possibly_damaging(0.675) TCGA-CZ-5462-01 18 44114312 44114312 G T LOXHD1 Missense_Mutation p.L289I 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-CZ-5462-01 18 46469033 46469033 A T SMAD7 Intron 0.20 TCGA-CZ-5462-01 19 10116391 10116391 C T COL5A3 Splice_Site p.X146_splice 0.24 TCGA-CZ-5462-01 19 13058762 13058769 ATGTCCCT - RAD23A Frame_Shift_Del p.V59Qfs*7 0.25 TCGA-CZ-5462-01 19 41129556 41129556 G - LTBP4 Frame_Shift_Del p.V1268Cfs*3 0.28 TCGA-CZ-5462-01 19 55363557 55363557 A T KIR3DL2 Missense_Mutation p.M59L 0.25 tolerated(0.22) benign(0.005) TCGA-CZ-5462-01 1 156812296 156812296 C T INSRR Missense_Mutation p.R1044H 0.10 deleterious(0) possibly_damaging(0.792) TCGA-CZ-5462-01 1 158618345 158618345 C T SPTA1 Missense_Mutation p.R1223Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-CZ-5462-01 1 183891372 183891372 A G RGL1 Missense_Mutation p.K709R 0.14 tolerated(0.08) benign(0.273) TCGA-CZ-5462-01 1 185953431 185953431 C T HMCN1 Missense_Mutation p.S974F 0.22 benign(0.438) TCGA-CZ-5462-01 1 223179160 223179160 G T DISP1 Missense_Mutation p.R1474M 0.28 tolerated_low_confidence(0.12) benign(0.007) TCGA-CZ-5462-01 1 43647495 43647495 G T WDR65 Missense_Mutation p.D150Y 0.22 deleterious(0.01) probably_damaging(0.953) TCGA-CZ-5462-01 20 31873889 31873889 C A BPIFB1 Missense_Mutation p.P4T 0.25 deleterious(0.02) benign(0.424) TCGA-CZ-5462-01 20 34099259 34099259 C T CEP250 Missense_Mutation p.A2378V 0.18 benign(0.001) TCGA-CZ-5462-01 20 40713330 40713330 G T PTPRT Silent p.V1376V 0.26 TCGA-CZ-5462-01 21 39870326 39870326 C T ERG Intron 0.15 TCGA-CZ-5462-01 21 45513966 45513966 T C TRAPPC10 Missense_Mutation p.V1007A 0.17 tolerated(0.09) benign(0.271) TCGA-CZ-5462-01 22 28256199 28256199 G - PITPNB Frame_Shift_Del p.Q189Rfs*8 0.24 TCGA-CZ-5462-01 2 103120043 103120043 T A SLC9A4 Missense_Mutation p.F286Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-CZ-5462-01 2 133540313 133540313 G A NCKAP5 Silent p.S1357S 0.23 TCGA-CZ-5462-01 2 179406075 179406075 T A TTN Missense_Mutation p.I32577F 0.17 TCGA-CZ-5462-01 2 179516238 179516238 A T TTN Silent p.V13163V 0.19 TCGA-CZ-5462-01 2 179634573 179634573 G A TTN Missense_Mutation p.S2912F 0.05 TCGA-CZ-5462-01 2 27306427 27306427 A G EMILIN1 Missense_Mutation p.E663G 0.09 benign(0.065) TCGA-CZ-5462-01 3 136710849 136710849 T C IL20RB Missense_Mutation p.Y201H 0.34 deleterious(0.02) possibly_damaging(0.816) TCGA-CZ-5462-01 3 45988547 45988547 C T CXCR6 Missense_Mutation p.L192F 0.32 tolerated(0.17) probably_damaging(0.984) TCGA-CZ-5462-01 4 128632123 128632123 C A INTU Missense_Mutation p.Q809K 0.18 deleterious(0.01) benign(0.219) TCGA-CZ-5462-01 4 169923257 169923257 G A CBR4 Missense_Mutation p.A167V 0.06 deleterious(0) probably_damaging(0.993) TCGA-CZ-5462-01 4 30724917 30724917 G T PCDH7 Missense_Mutation p.V625L 0.19 deleterious(0) possibly_damaging(0.832) TCGA-CZ-5462-01 4 66197808 66197808 G T EPHA5 Missense_Mutation p.S964Y 0.15 tolerated(0.73) benign(0.378) TCGA-CZ-5462-01 4 68725379 68725379 G A TMPRSS11D Missense_Mutation p.S9L 0.26 deleterious(0.02) possibly_damaging(0.656) TCGA-CZ-5462-01 4 7783208 7783208 C A AFAP1 Silent p.L559L 0.18 TCGA-CZ-5462-01 4 88583134 88583134 C T DMP1 Silent p.D68D 0.08 TCGA-CZ-5462-01 5 154394373 154394373 C T KIF4B Silent p.S318S 0.15 TCGA-CZ-5462-01 5 33963874 33963877 AGAA - SLC45A2 Frame_Shift_Del p.I271Rfs*8 0.21 TCGA-CZ-5462-01 5 79855596 79855596 G T ANKRD34B Missense_Mutation p.D81E 0.19 deleterious(0) probably_damaging(1) TCGA-CZ-5462-01 5 86564707 86564707 G A RASA1 Missense_Mutation p.G147R 0.17 tolerated_low_confidence(0.08) probably_damaging(0.953) TCGA-CZ-5462-01 6 101110412 101110412 C T ASCC3 Missense_Mutation p.V763I 0.19 tolerated(0.47) benign(0.012) TCGA-CZ-5462-01 6 105233140 105233140 C A HACE1 Nonsense_Mutation p.E377* 0.26 TCGA-CZ-5462-01 6 123105087 123105088 - GAA FABP7 3'UTR 0.32 TCGA-CZ-5462-01 6 129419358 129419358 C - LAMA2 Frame_Shift_Del p.R148Gfs*24 0.29 TCGA-CZ-5462-01 6 42637945 42637945 T A UBR2 Missense_Mutation p.W1333R 0.26 deleterious(0) probably_damaging(0.997) TCGA-CZ-5462-01 6 89322236 89322236 C T RNGTT 3'UTR 0.36 TCGA-CZ-5462-01 6 89322274 89322274 A G RNGTT 3'UTR 0.37 TCGA-CZ-5462-01 7 100386875 100386875 A - ZAN Frame_Shift_Del p.N2421Mfs*32 0.35 TCGA-CZ-5462-01 7 106509653 106509653 C A PIK3CG Missense_Mutation p.N549K 0.24 tolerated(0.15) benign(0.173) TCGA-CZ-5462-01 7 131982903 131982903 C A PLXNA4 Missense_Mutation p.D484Y 0.33 deleterious(0) probably_damaging(1) TCGA-CZ-5462-01 7 13975450 13975450 G A ETV1 Missense_Mutation p.S146F 0.23 deleterious(0) probably_damaging(0.999) TCGA-CZ-5462-01 7 38431539 38431539 G A AMPH Missense_Mutation p.A563V 0.23 tolerated(0.2) benign(0.021) TCGA-CZ-5462-01 7 48314043 48314043 G A ABCA13 Missense_Mutation p.G1594S 0.19 benign(0.076) TCGA-CZ-5462-01 7 74167453 74167453 T A GTF2I Missense_Mutation p.V862D 0.10 deleterious(0) probably_damaging(0.976) TCGA-CZ-5462-01 8 120435157 120435157 T A NOV Missense_Mutation p.Y287N 0.17 deleterious(0) probably_damaging(1) TCGA-CZ-5462-01 8 133764200 133764200 C T TMEM71 Missense_Mutation p.G49S 0.15 deleterious(0.04) benign(0.002) TCGA-CZ-5462-01 8 61732614 61732614 A T CHD7 Missense_Mutation p.M888L 0.17 benign(0.001) TCGA-CZ-5462-01 9 117139678 117139678 C T AKNA Missense_Mutation p.A137T 0.33 tolerated(0.26) benign(0.015) TCGA-CZ-5462-01 9 34834304 34834304 C T FAM205B RNA 0.20 TCGA-CZ-5462-01 9 93636536 93636536 G A SYK Silent p.P322P 0.27 TCGA-CZ-5462-01 9 990589 990589 C T DMRT3 Nonsense_Mutation p.R335* 0.21 TCGA-CZ-5462-01 X 23754070 23754070 G A ACOT9 Silent p.N28N 0.40 TCGA-CZ-5462-01 X 56292017 56292017 T C KLF8 Silent p.T162T 0.44 TCGA-CZ-5462-01 X 56310863 56310863 G A KLF8 Missense_Mutation p.C339Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-CZ-5463-01 10 7791323 7791323 A G ITIH2 3'UTR 0.08 TCGA-CZ-5463-01 10 94110949 94110949 A T MARCH5 Missense_Mutation p.E274D 0.37 tolerated(0.33) benign(0.012) TCGA-CZ-5463-01 11 102595498 102595498 G T MMP8 Missense_Mutation p.T30K 0.31 tolerated(0.37) benign(0.119) TCGA-CZ-5463-01 11 102736586 102736586 A C MMP12 RNA 0.36 TCGA-CZ-5463-01 11 111179126 111179126 T A COLCA2 Nonsense_Mutation p.Y143* 0.36 TCGA-CZ-5463-01 11 55063168 55063168 T C TRIM51HP Splice_Site 0.30 TCGA-CZ-5463-01 11 55418663 55418663 G T OR4S2 Missense_Mutation p.C95F 0.38 deleterious(0) possibly_damaging(0.519) TCGA-CZ-5463-01 12 13233566 13233566 C G KIAA1467 3'UTR 0.38 TCGA-CZ-5463-01 12 667220 667220 C A B4GALNT3 Nonsense_Mutation p.S858* 0.32 TCGA-CZ-5463-01 12 7090783 7090783 A C LPCAT3 Silent p.V157V 0.33 TCGA-CZ-5463-01 12 7526111 7526111 T A CD163L1 Missense_Mutation p.I1179F 0.32 deleterious(0) possibly_damaging(0.875) TCGA-CZ-5463-01 13 20660011 20660011 T C ZMYM2 Missense_Mutation p.C1331R 0.31 tolerated(0.74) benign(0.139) TCGA-CZ-5463-01 13 46543242 46543242 G C ZC3H13 Missense_Mutation p.T1146S 0.40 unknown(0) TCGA-CZ-5463-01 13 96230215 96230215 G C CLDN10 Missense_Mutation p.D212H 0.35 tolerated(0.06) possibly_damaging(0.615) TCGA-CZ-5463-01 14 21109008 21109008 C T OR6S1 Silent p.T281T 0.06 TCGA-CZ-5463-01 14 65560495 65560495 T - MAX Frame_Shift_Del p.K34Nfs*31 0.37 TCGA-CZ-5463-01 15 34522008 34522008 T C EMC4 3'UTR 0.32 TCGA-CZ-5463-01 15 62214721 62214721 G C VPS13C Missense_Mutation p.Q2284E 0.36 tolerated(0.18) probably_damaging(0.997) TCGA-CZ-5463-01 15 64967099 64967099 C A ZNF609 Silent p.G682G 0.37 TCGA-CZ-5463-01 15 92669422 92669422 G A SLCO3A1 Missense_Mutation p.V436I 0.40 tolerated(0.49) benign(0.057) TCGA-CZ-5463-01 16 87743228 87743228 C T KLHDC4 Missense_Mutation p.E364K 0.29 tolerated(0.18) benign(0.04) TCGA-CZ-5463-01 16 90095480 90095480 T A C16orf3 Missense_Mutation p.S91C 0.46 deleterious_low_confidence(0.04) possibly_damaging(0.843) TCGA-CZ-5463-01 17 31260288 31260288 C A TMEM98 Silent p.A76A 0.38 TCGA-CZ-5463-01 17 4647403 4647403 G T ZMYND15 Splice_Site p.X499_splice 0.45 TCGA-CZ-5463-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.43 deleterious(0) probably_damaging(0.997) TCGA-CZ-5463-01 18 674266 674266 T G ENOSF1 3'UTR 0.36 TCGA-CZ-5463-01 19 1785555 1785555 G A ATP8B3 Silent p.R1102R 0.38 TCGA-CZ-5463-01 19 43407789 43407789 C G PSG6 3'UTR 0.39 TCGA-CZ-5463-01 19 43407790 43407790 C T PSG6 3'UTR 0.40 TCGA-CZ-5463-01 19 48988934 48988934 C T LMTK3 3'UTR 0.25 TCGA-CZ-5463-01 19 53740523 53740523 G T ZNF677 Missense_Mutation p.P486H 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-CZ-5463-01 19 54313857 54313857 A G NLRP12 Silent p.R352R 0.09 TCGA-CZ-5463-01 19 55450708 55450708 G A NLRP7 Silent p.H493H 0.11 TCGA-CZ-5463-01 1 10490531 10490531 C G APITD1 5'UTR 0.47 TCGA-CZ-5463-01 1 10490545 10490545 C T APITD1 5'UTR 0.50 TCGA-CZ-5463-01 1 116226627 116226627 G T VANGL1 Missense_Mutation p.D337Y 0.36 deleterious(0) possibly_damaging(0.629) TCGA-CZ-5463-01 1 11896171 11896171 G A CLCN6 Missense_Mutation p.M647I 0.42 tolerated(0.51) benign(0.028) TCGA-CZ-5463-01 1 186286645 186286645 G T TPR Silent p.T2303T 0.25 TCGA-CZ-5463-01 1 207790124 207790124 G T CR1 Missense_Mutation p.R2289L 0.29 tolerated(0.09) possibly_damaging(0.847) TCGA-CZ-5463-01 1 57189298 57189298 A C C1orf168 Missense_Mutation p.M646R 0.33 deleterious(0) possibly_damaging(0.864) TCGA-CZ-5463-01 1 67161174 67161174 A G SGIP1 Missense_Mutation p.E543G 0.22 deleterious(0.01) benign(0.001) TCGA-CZ-5463-01 1 79387344 79387344 T C ELTD1 Missense_Mutation p.N404S 0.37 tolerated(0.56) benign(0.072) TCGA-CZ-5463-01 20 30822295 30822295 A G POFUT1 Missense_Mutation p.K333R 0.13 tolerated(0.26) benign(0.005) TCGA-CZ-5463-01 20 36611752 36611752 A G TTI1 3'UTR 0.64 TCGA-CZ-5463-01 21 11038844 11038844 G A BAGE2 RNA 0.06 TCGA-CZ-5463-01 2 163256789 163256789 C T KCNH7 Missense_Mutation p.V773I 0.04 tolerated(0.14) probably_damaging(0.927) TCGA-CZ-5463-01 2 44547384 44547385 - A SLC3A1 Frame_Shift_Ins p.S556Kfs*7 0.32 TCGA-CZ-5463-01 3 112256693 112256693 T G ATG3 Missense_Mutation p.K185N 0.55 tolerated(0.22) benign(0.048) TCGA-CZ-5463-01 3 120461341 120461341 T C RABL3 Missense_Mutation p.D5G 0.47 deleterious(0.01) possibly_damaging(0.786) TCGA-CZ-5463-01 3 186508151 186508151 C T RFC4 Silent p.Q282Q 0.08 TCGA-CZ-5463-01 4 110737330 110737330 C T GAR1 Nonsense_Mutation p.R4* 0.23 TCGA-CZ-5463-01 4 156634339 156634339 T - GUCY1A3 Frame_Shift_Del p.F393Lfs*17 0.23 TCGA-CZ-5463-01 4 2132991 2132991 T G POLN Silent p.P586P 0.03 TCGA-CZ-5463-01 5 150050151 150050151 A G MYOZ3 Missense_Mutation p.Q56R 0.08 deleterious(0) probably_damaging(1) TCGA-CZ-5463-01 5 159821900 159821903 TCTC - C5orf54 Frame_Shift_Del p.E199Sfs*2 0.31 TCGA-CZ-5463-01 5 172386880 172386880 A C RPL26L1 Missense_Mutation p.K2Q 0.53 deleterious(0.01) benign(0.015) TCGA-CZ-5463-01 5 176815364 176815365 - T SLC34A1 Frame_Shift_Ins p.S310Ffs*129 0.16 TCGA-CZ-5463-01 6 136599666 136599666 C A BCLAF1 Missense_Mutation p.R118I 0.22 deleterious_low_confidence(0) unknown(0) TCGA-CZ-5463-01 6 29141585 29141585 C A OR2J2 Missense_Mutation p.T58K 0.42 deleterious(0.01) probably_damaging(0.924) TCGA-CZ-5463-01 6 39162007 39162007 A G KCNK5 Missense_Mutation p.I191T 0.25 deleterious(0.02) possibly_damaging(0.876) TCGA-CZ-5463-01 6 97423877 97423877 C A KLHL32 Missense_Mutation p.Q10K 0.36 tolerated_low_confidence(0.2) benign(0.002) TCGA-CZ-5463-01 7 113518058 113518058 C A PPP1R3A Missense_Mutation p.G1030V 0.38 deleterious(0.03) probably_damaging(0.917) TCGA-CZ-5463-01 7 119915447 119915447 G A KCND2 Missense_Mutation p.R254H 0.34 deleterious(0) probably_damaging(0.992) TCGA-CZ-5463-01 7 151791383 151791383 T A GALNT11 Missense_Mutation p.L24H 0.36 deleterious(0) probably_damaging(0.969) TCGA-CZ-5463-01 7 31617614 31617614 G A CCDC129 Missense_Mutation p.A272T 0.17 tolerated(0.47) benign(0.03) TCGA-CZ-5463-01 7 99700547 99700547 T C AP4M1 Silent p.N105N 0.28 TCGA-CZ-5463-01 8 43216227 43216227 A G POTEA RNA 0.07 TCGA-CZ-5463-01 9 140093554 140093554 A T TPRN Missense_Mutation p.L537H 0.48 tolerated(0.13) probably_damaging(0.968) TCGA-CZ-5463-01 9 91159434 91159434 C A NXNL2 Missense_Mutation p.A148D 0.35 deleterious(0) probably_damaging(0.965) TCGA-CZ-5465-01 10 11543102 11543102 T C USP6NL Missense_Mutation p.S145G 0.18 tolerated(0.12) benign(0.015) TCGA-CZ-5465-01 10 43318590 43318590 G C BMS1 Missense_Mutation p.V1053L 0.41 deleterious(0) benign(0.369) TCGA-CZ-5465-01 10 63212753 63212753 C A TMEM26 Missense_Mutation p.E29D 0.14 tolerated(0.57) benign(0.312) TCGA-CZ-5465-01 10 70332626 70332626 T C TET1 Silent p.N177N 0.10 TCGA-CZ-5465-01 10 90698146 90698146 A C ACTA2 Intron 0.56 TCGA-CZ-5465-01 10 97810064 97810064 C T CCNJ Missense_Mutation p.R41W 0.17 deleterious(0.05) probably_damaging(0.995) TCGA-CZ-5465-01 11 1092095 1092095 G A MUC2 Nonsense_Mutation p.W1305* 0.24 TCGA-CZ-5465-01 11 118390456 118390456 A G KMT2A Missense_Mutation p.N3757S 0.31 possibly_damaging(0.764) TCGA-CZ-5465-01 11 26695022 26695022 A - SLC5A12 Frame_Shift_Del p.L545Yfs*80 0.24 TCGA-CZ-5465-01 11 60711236 60711236 G A SLC15A3 Silent p.I307I 0.22 TCGA-CZ-5465-01 11 64453329 64453329 A G NRXN2 Missense_Mutation p.I314T 0.49 deleterious(0) benign(0.012) TCGA-CZ-5465-01 11 65635794 65635794 C T EFEMP2 Missense_Mutation p.V316M 0.46 deleterious(0.03) benign(0.411) TCGA-CZ-5465-01 11 67265791 67265791 A C PITPNM1 Missense_Mutation p.L496R 0.32 deleterious(0.01) possibly_damaging(0.899) TCGA-CZ-5465-01 12 100452921 100452921 T G UHRF1BP1L Missense_Mutation p.K712Q 0.46 deleterious(0) possibly_damaging(0.703) TCGA-CZ-5465-01 12 40689408 40689408 C A LRRK2 Missense_Mutation p.Q1020K 0.46 tolerated(0.09) probably_damaging(0.932) TCGA-CZ-5465-01 12 42853975 42853975 T G PRICKLE1 Missense_Mutation p.K711T 0.50 tolerated(0.32) benign(0.048) TCGA-CZ-5465-01 12 4385304 4385304 C G CCND2 Missense_Mutation p.S110C 0.35 deleterious(0) probably_damaging(0.973) TCGA-CZ-5465-01 12 51449970 51449970 T G LETMD1 Missense_Mutation p.L248R 0.37 deleterious(0) possibly_damaging(0.866) TCGA-CZ-5465-01 12 53776832 53776832 T G SP1 Silent p.A367A 0.43 TCGA-CZ-5465-01 12 6573828 6573828 A - VAMP1 Intron 0.32 TCGA-CZ-5465-01 12 88560118 88560118 C T TMTC3 Missense_Mutation p.P270L 0.45 deleterious(0) probably_damaging(0.999) TCGA-CZ-5465-01 12 88584363 88584363 G - TMTC3 Frame_Shift_Del p.S557Tfs*2 0.23 TCGA-CZ-5465-01 13 101717877 101717877 G A NALCN Missense_Mutation p.R1495W 0.15 deleterious(0) probably_damaging(0.999) TCGA-CZ-5465-01 14 23596350 23596350 G T SLC7A8 3'UTR 0.30 TCGA-CZ-5465-01 14 23842465 23842465 C A IL25 Missense_Mutation p.D46E 0.46 tolerated(0.15) benign(0.007) TCGA-CZ-5465-01 14 60938407 60938407 T A C14orf39 Missense_Mutation p.Y125F 0.28 deleterious(0) possibly_damaging(0.801) TCGA-CZ-5465-01 14 63735887 63735887 G C RHOJ Splice_Site p.X79_splice 0.25 TCGA-CZ-5465-01 14 75513395 75513396 - AT MLH3 Frame_Shift_Ins p.R989Sfs*8 0.22 TCGA-CZ-5465-01 15 45404093 45404097 AGGAA - DUOX2 Frame_Shift_Del p.F128Qfs*171 0.22 TCGA-CZ-5465-01 15 55669238 55669238 T G CCPG1 Missense_Mutation p.E121D 0.40 tolerated(0.22) benign(0.16) TCGA-CZ-5465-01 15 79587076 79587085 TCTTGCTCTC - ANKRD34C Frame_Shift_Del p.S484Lfs*5 0.39 TCGA-CZ-5465-01 15 83349701 83349701 T - AP3B2 Frame_Shift_Del p.N220Tfs*9 0.26 TCGA-CZ-5465-01 15 93616253 93616253 G C RGMA Missense_Mutation p.L16V 0.40 tolerated_low_confidence(1) benign(0.005) TCGA-CZ-5465-01 16 19641134 19641134 C G C16orf62 Missense_Mutation p.H605D 0.40 deleterious(0.01) benign(0.443) TCGA-CZ-5465-01 16 28847500 28847500 G A ATXN2L Intron 0.40 TCGA-CZ-5465-01 16 5040871 5040871 A G SEC14L5 Missense_Mutation p.K150R 0.45 tolerated(0.08) benign(0.068) TCGA-CZ-5465-01 17 18055188 18055188 C T MYO15A Missense_Mutation p.R2606W 0.58 unknown(0) TCGA-CZ-5465-01 17 40715086 40715086 C T COASY Missense_Mutation p.S178L 0.46 deleterious(0) probably_damaging(0.998) TCGA-CZ-5465-01 17 42854119 42854119 C G ADAM11 Missense_Mutation p.P525A 0.32 tolerated(0.07) benign(0.002) TCGA-CZ-5465-01 17 59820468 59820468 C T BRIP1 Missense_Mutation p.R762H 0.14 deleterious(0) probably_damaging(0.994) TCGA-CZ-5465-01 17 62029159 62029159 G T SCN4A Silent p.I826I 0.29 TCGA-CZ-5465-01 17 76162140 76162140 A G C17orf99 3'UTR 0.40 TCGA-CZ-5465-01 17 7727491 7727491 G C DNAH2 Missense_Mutation p.G3844A 0.24 probably_damaging(0.972) TCGA-CZ-5465-01 17 79477820 79477820 C T ACTG1 Missense_Mutation p.G342S 0.07 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CZ-5465-01 18 74402256 74402256 T C AC034110.1 RNA 0.40 TCGA-CZ-5465-01 18 7955120 7955120 A T PTPRM Missense_Mutation p.E280D 0.43 deleterious(0.04) benign(0.234) TCGA-CZ-5465-01 19 1044699 1044699 G A ABCA7 Missense_Mutation p.A391T 0.20 tolerated(0.17) benign(0.006) TCGA-CZ-5465-01 19 17449208 17449208 G A GTPBP3 Silent p.E112E 0.04 TCGA-CZ-5465-01 19 32843992 32843992 T A ZNF507 Missense_Mutation p.C86S 0.52 tolerated(0.41) benign(0.032) TCGA-CZ-5465-01 19 55752433 55752436 ATGG - PPP6R1 Frame_Shift_Del p.H392Mfs*11 0.34 TCGA-CZ-5465-01 19 58948571 58948571 C T ZNF132 Nonsense_Mutation p.W25* 0.37 TCGA-CZ-5465-01 1 117561137 117561137 G T CD101 Missense_Mutation p.A658S 0.47 deleterious(0.03) possibly_damaging(0.854) TCGA-CZ-5465-01 1 153580495 153580522 CTTTCTGGAGCATCTCGCGGAAGCTGCT GCTGCA S100A16 Frame_Shift_Del p.S36Cfs*4 0.22 TCGA-CZ-5465-01 1 153580522 153580522 T A S100A16 Missense_Mutation p.S36C 0.13 tolerated(0.06) possibly_damaging(0.672) TCGA-CZ-5465-01 1 161599725 161599725 C T FCGR3B Silent p.E90E 0.57 TCGA-CZ-5465-01 1 173780412 173780412 G C CENPL Nonsense_Mutation p.S9* 0.20 TCGA-CZ-5465-01 1 196749100 196749100 G T CFHR3 Missense_Mutation p.V143F 0.45 tolerated(0.35) benign(0.237) TCGA-CZ-5465-01 1 215848923 215848923 G T USH2A Nonsense_Mutation p.Y4110* 0.20 TCGA-CZ-5465-01 1 217947704 217947704 G T SPATA17 Missense_Mutation p.R183I 0.46 deleterious(0) possibly_damaging(0.563) TCGA-CZ-5465-01 1 228582654 228582654 A T TRIM11 Missense_Mutation p.Y387N 0.39 deleterious(0) possibly_damaging(0.6) TCGA-CZ-5465-01 1 242287900 242287900 G C PLD5 Missense_Mutation p.A268G 0.04 tolerated(0.25) benign(0.438) TCGA-CZ-5465-01 1 244715945 244715945 T A C1orf101 Missense_Mutation p.S286R 0.43 deleterious(0.01) possibly_damaging(0.517) TCGA-CZ-5465-01 1 248112361 248112361 A - OR2L8 Frame_Shift_Del p.I68Lfs*3 0.22 TCGA-CZ-5465-01 1 26524568 26524568 G A CATSPER4 Silent p.L226L 0.42 TCGA-CZ-5465-01 1 31447563 31447563 C T PUM1 Missense_Mutation p.A481T 0.27 tolerated_low_confidence(0.11) possibly_damaging(0.585) TCGA-CZ-5465-01 1 38272900 38272900 G A C1orf122 5'Flank 0.48 TCGA-CZ-5465-01 1 40777201 40777201 G - COL9A2 Frame_Shift_Del p.Q164Rfs*19 0.24 TCGA-CZ-5465-01 1 45484036 45484036 T C ZSWIM5 3'UTR 0.11 TCGA-CZ-5465-01 1 55642115 55642115 A T USP24 Silent p.G164G 0.33 TCGA-CZ-5465-01 1 63789417 63789417 T C FOXD3 Missense_Mutation p.F230L 0.09 tolerated(0.07) possibly_damaging(0.584) TCGA-CZ-5465-01 1 89875916 89875916 C T GBP1P1 RNA 0.41 TCGA-CZ-5465-01 20 6069695 6069695 A C FERMT1 Missense_Mutation p.F394C 0.40 tolerated(0.17) benign(0.12) TCGA-CZ-5465-01 21 27096945 27096945 A C ATP5J 3'UTR 0.37 TCGA-CZ-5465-01 21 27096949 27096949 C T ATP5J 3'UTR 0.36 TCGA-CZ-5465-01 21 30339421 30339422 - A LTN1 Frame_Shift_Ins p.S511Kfs*13 0.24 TCGA-CZ-5465-01 21 38539860 38539860 T A TTC3 Missense_Mutation p.S1469T 0.27 tolerated(0.16) benign(0.269) TCGA-CZ-5465-01 22 45133101 45133101 T C PRR5 Missense_Mutation p.S404P 0.11 tolerated_low_confidence(0.4) benign(0.001) TCGA-CZ-5465-01 22 50927866 50927867 - C MIOX Frame_Shift_Ins p.E212* 0.33 TCGA-CZ-5465-01 2 102019046 102019047 - A RFX8 Frame_Shift_Ins p.S366Ffs*50 0.33 TCGA-CZ-5465-01 2 112539971 112539971 C G ANAPC1 Missense_Mutation p.R1726T 0.35 deleterious(0.05) benign(0.205) TCGA-CZ-5465-01 2 122206531 122206531 T C CLASP1 Silent p.L563L 0.41 TCGA-CZ-5465-01 2 132509139 132509139 C T C2orf27A Silent p.V3V 0.34 TCGA-CZ-5465-01 2 138434176 138434176 T G THSD7B 3'UTR 0.36 TCGA-CZ-5465-01 2 179569401 179569401 G A TTN Missense_Mutation p.S9933L 0.40 TCGA-CZ-5465-01 2 212587123 212587123 C A ERBB4 Missense_Mutation p.C293F 0.34 deleterious(0) probably_damaging(0.989) TCGA-CZ-5465-01 2 215876834 215876834 T - ABCA12 Frame_Shift_Del p.K661Sfs*3 0.28 TCGA-CZ-5465-01 2 27303623 27303623 G A EMILIN1 Missense_Mutation p.R105H 0.07 benign(0.037) TCGA-CZ-5465-01 2 32605236 32605236 T C BIRC6 Missense_Mutation p.S175P 0.44 benign(0.17) TCGA-CZ-5465-01 2 37347219 37347219 C G EIF2AK2 Missense_Mutation p.W377C 0.41 deleterious(0) probably_damaging(0.999) TCGA-CZ-5465-01 2 44209499 44209499 G T LRPPRC Missense_Mutation p.S75Y 0.29 tolerated(0.07) benign(0.091) TCGA-CZ-5465-01 2 48573616 48573616 T C FOXN2 Missense_Mutation p.I88T 0.05 deleterious(0) benign(0.103) TCGA-CZ-5465-01 2 60780394 60780394 G A BCL11A Silent p.R4R 0.36 TCGA-CZ-5465-01 3 10191480 10191480 T - VHL Frame_Shift_Del p.L158Rfs*12 0.43 TCGA-CZ-5465-01 3 113858457 113858457 C G DRD3 Missense_Mutation p.V205L 0.43 tolerated(1) benign(0.001) TCGA-CZ-5465-01 3 115395305 115395305 C T GAP43 Missense_Mutation p.A195V 0.10 tolerated(0.09) benign(0.012) TCGA-CZ-5465-01 3 119217644 119217644 G C TIMMDC1 Missense_Mutation p.V22L 0.44 deleterious(0.04) possibly_damaging(0.533) TCGA-CZ-5465-01 3 122437546 122437546 G T PARP14 Missense_Mutation p.K1516N 0.36 deleterious(0.02) probably_damaging(0.964) TCGA-CZ-5465-01 3 14157930 14157930 C T CHCHD4 Silent p.E52E 0.04 TCGA-CZ-5465-01 3 151161389 151161389 T A IGSF10 Silent p.A1782A 0.34 TCGA-CZ-5465-01 3 183014572 183014572 C T MCF2L2 Intron 0.78 TCGA-CZ-5465-01 3 33540105 33540105 T G CLASP2 3'UTR 0.28 TCGA-CZ-5465-01 3 52696199 52696199 C - PBRM1 Frame_Shift_Del p.E160Kfs*14 0.36 TCGA-CZ-5465-01 3 93643084 93643084 C T PROS1 Missense_Mutation p.V87I 0.18 tolerated(0.13) benign(0.158) TCGA-CZ-5465-01 4 134073481 134073481 T G PCDH10 Missense_Mutation p.F729C 0.32 deleterious(0) possibly_damaging(0.759) TCGA-CZ-5465-01 4 147110954 147110954 C T LSM6 3'UTR 0.31 TCGA-CZ-5465-01 4 166254730 166254730 T - MSMO1 Frame_Shift_Del p.L71Yfs*8 0.23 TCGA-CZ-5465-01 4 48887578 48887578 A G OCIAD2 Missense_Mutation p.C130R 0.44 deleterious(0) probably_damaging(0.996) TCGA-CZ-5465-01 4 62813877 62813877 G A LPHN3 Missense_Mutation p.M828I 0.28 tolerated(0.05) probably_damaging(0.992) TCGA-CZ-5465-01 5 137521998 137521998 C T KIF20A Missense_Mutation p.R745W 0.04 deleterious(0) probably_damaging(0.979) TCGA-CZ-5465-01 5 161580564 161580564 C T GABRG2 3'UTR 0.31 TCGA-CZ-5465-01 5 32090803 32090803 T G PDZD2 Missense_Mutation p.S2417A 0.41 deleterious(0.01) possibly_damaging(0.53) TCGA-CZ-5465-01 5 5463644 5463648 AACAG - KIAA0947 Frame_Shift_Del p.T1400Dfs*11 0.22 TCGA-CZ-5465-01 6 131971248 131971248 G C ENPP3 Missense_Mutation p.G79A 0.33 tolerated(0.06) possibly_damaging(0.595) TCGA-CZ-5465-01 6 151726969 151726969 G T RMND1 Silent p.V401V 0.34 TCGA-CZ-5465-01 6 24706388 24706388 G T C6orf62 Missense_Mutation p.L223I 0.04 tolerated(0.1) possibly_damaging(0.475) TCGA-CZ-5465-01 6 37250060 37250060 G A TBC1D22B Missense_Mutation p.G174E 0.39 deleterious(0.03) benign(0.266) TCGA-CZ-5465-01 7 100184248 100184248 C G FBXO24 5'Flank 0.20 TCGA-CZ-5465-01 7 116411638 116411638 C G MET Silent p.V957V 0.44 TCGA-CZ-5465-01 7 123119948 123119948 A C IQUB Silent p.L437L 0.43 TCGA-CZ-5465-01 7 138764225 138764225 G A ZC3HAV1 Missense_Mutation p.L488F 0.39 tolerated(1) benign(0.003) TCGA-CZ-5465-01 7 29980329 29980330 - C SCRN1 Frame_Shift_Ins p.A257Cfs*34 0.33 TCGA-CZ-5465-01 7 44153688 44153688 G A AEBP1 Missense_Mutation p.G1102E 0.14 tolerated_low_confidence(0.41) unknown(0) TCGA-CZ-5465-01 7 92734124 92734124 A T SAMD9 Missense_Mutation p.D429E 0.04 tolerated(0.13) benign(0.026) TCGA-CZ-5465-01 7 99001090 99001090 T C PDAP1 Silent p.A48A 0.06 TCGA-CZ-5465-01 8 110460595 110460595 T C PKHD1L1 Silent p.N2000N 0.32 TCGA-CZ-5465-01 8 125052244 125052244 A T FER1L6 Silent p.T862T 0.14 TCGA-CZ-5465-01 8 142444934 142444934 T C PTP4A3 3'Flank 0.44 TCGA-CZ-5465-01 8 22452072 22452072 A T PDLIM2 3'Flank 0.65 TCGA-CZ-5465-01 9 104192206 104192207 - TT ALDOB Frame_Shift_Ins p.T52Kfs*27 0.21 TCGA-CZ-5465-01 9 108223895 108223895 A G FSD1L Missense_Mutation p.Q37R 0.42 tolerated(0.3) benign(0) TCGA-CZ-5465-01 9 123719562 123719562 C T C5 Splice_Site p.X1588_splice 0.39 TCGA-CZ-5465-01 9 131151698 131151698 C G URM1 Missense_Mutation p.P116R 0.46 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-CZ-5465-01 9 134350077 134350077 C T PRRC2B Missense_Mutation p.P854L 0.27 deleterious(0.03) possibly_damaging(0.616) TCGA-CZ-5465-01 9 139697161 139697161 G A CCDC183 Missense_Mutation p.V197M 0.28 deleterious(0) probably_damaging(1) TCGA-CZ-5465-01 9 16419517 16419517 G - BNC2 Frame_Shift_Del p.Q924Sfs*23 0.12 TCGA-CZ-5465-01 9 6013478 6013478 T G RANBP6 Missense_Mutation p.Q710H 0.48 deleterious(0.01) possibly_damaging(0.885) TCGA-CZ-5465-01 X 100297051 100297051 T C TRMT2B Silent p.L76L 0.13 TCGA-CZ-5465-01 X 1413322 1413322 G T CSF2RA Missense_Mutation p.D250Y 0.29 deleterious(0) probably_damaging(0.987) TCGA-CZ-5465-01 X 44879876 44879878 GGT - KDM6A In_Frame_Del p.V156del 0.39 TCGA-CZ-5465-01 X 48378842 48378842 T G PORCN Missense_Mutation p.I455S 0.48 deleterious(0) possibly_damaging(0.536) TCGA-CZ-5465-01 X 67413751 67413751 G C OPHN1 Missense_Mutation p.I394M 0.15 deleterious(0) probably_damaging(0.969) TCGA-CZ-5466-01 11 118404209 118404209 G T TMEM25 Missense_Mutation p.V250L 0.24 tolerated(1) benign(0.022) TCGA-CZ-5466-01 11 122930276 122930276 C G HSPA8 Missense_Mutation p.R342P 0.13 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-CZ-5466-01 11 130131008 130131008 A T ZBTB44 Nonsense_Mutation p.L254* 0.25 TCGA-CZ-5466-01 11 47713657 47713657 T C AGBL2 Silent p.R282R 0.18 TCGA-CZ-5466-01 11 63175623 63175623 T A SLC22A9 Nonsense_Mutation p.L443* 0.16 TCGA-CZ-5466-01 12 104380948 104380948 A C TDG 3'UTR 0.18 TCGA-CZ-5466-01 12 32886681 32886681 T C DNM1L Silent p.Y493Y 0.14 TCGA-CZ-5466-01 12 51897852 51897852 C A SLC4A8 Missense_Mutation p.P1041T 0.17 deleterious(0.03) benign(0.005) TCGA-CZ-5466-01 12 53647588 53647588 C G MFSD5 Silent p.V430V 0.12 TCGA-CZ-5466-01 12 56076036 56076036 G A METTL7B Silent p.P166P 0.43 TCGA-CZ-5466-01 12 56096858 56096858 T C ITGA7 Missense_Mutation p.Y104C 0.19 tolerated(0.09) possibly_damaging(0.729) TCGA-CZ-5466-01 12 58201174 58201174 C G AVIL Missense_Mutation p.R477S 0.14 tolerated(0.25) benign(0.001) TCGA-CZ-5466-01 12 7295478 7295478 G T CLSTN3 Silent p.S518S 0.43 TCGA-CZ-5466-01 13 73347935 73347935 C G DIS3 Missense_Mutation p.A376P 0.21 tolerated(0.06) probably_damaging(0.985) TCGA-CZ-5466-01 14 101490139 101490139 G A MIR299 RNA 0.12 TCGA-CZ-5466-01 14 23868034 23868035 - T MYH6 Frame_Shift_Ins p.N598Kfs*38 0.17 TCGA-CZ-5466-01 14 53619339 53619339 C A DDHD1 Missense_Mutation p.V160L 0.27 deleterious(0.02) possibly_damaging(0.881) TCGA-CZ-5466-01 14 55203899 55203899 G A SAMD4A Silent p.L291L 0.25 TCGA-CZ-5466-01 14 72176218 72176218 A G SIPA1L1 Missense_Mutation p.I1370V 0.14 tolerated(0.38) benign(0) TCGA-CZ-5466-01 14 94519372 94519372 C T DDX24 Silent p.E760E 0.21 TCGA-CZ-5466-01 14 95053880 95053880 C T SERPINA5 Missense_Mutation p.P61S 0.25 tolerated(0.08) possibly_damaging(0.554) TCGA-CZ-5466-01 15 23811842 23811842 C T MKRN3 Missense_Mutation p.R305C 0.20 tolerated(0.09) benign(0.076) TCGA-CZ-5466-01 15 55931919 55931919 C T PRTG Missense_Mutation p.A749T 0.20 tolerated(1) benign(0.013) TCGA-CZ-5466-01 15 59408907 59408907 A T CCNB2 Nonsense_Mutation p.K206* 0.19 TCGA-CZ-5466-01 15 64967175 64967175 C G ZNF609 Missense_Mutation p.P708A 0.16 tolerated(0.17) benign(0.138) TCGA-CZ-5466-01 17 42295567 42295567 G T UBTF Missense_Mutation p.L11M 0.25 tolerated_low_confidence(0.14) benign(0.321) TCGA-CZ-5466-01 17 4924146 4924146 C T KIF1C Silent p.A661A 0.09 TCGA-CZ-5466-01 17 67124895 67124895 G T ABCA6 Silent p.T328T 0.18 TCGA-CZ-5466-01 17 67124896 67124896 G T ABCA6 Missense_Mutation p.T328N 0.18 deleterious(0) probably_damaging(0.97) TCGA-CZ-5466-01 19 14165245 14165245 C T PALM3 Silent p.A398A 0.16 TCGA-CZ-5466-01 19 40318192 40318193 CA - DYRK1B Frame_Shift_Del p.V304Gfs*14 0.24 TCGA-CZ-5466-01 19 44840845 44840845 T G ZNF112 Missense_Mutation p.I57L 0.16 tolerated(0.18) probably_damaging(0.984) TCGA-CZ-5466-01 19 54629912 54629912 C T PRPF31 Missense_Mutation p.R289W 0.22 deleterious(0.01) probably_damaging(0.969) TCGA-CZ-5466-01 19 9068910 9068910 G A MUC16 Missense_Mutation p.T6179I 0.06 unknown(0) TCGA-CZ-5466-01 19 9643586 9643586 T G ZNF426 Missense_Mutation p.K87T 0.21 deleterious(0.01) probably_damaging(0.976) TCGA-CZ-5466-01 1 100472612 100472612 T C SLC35A3 Missense_Mutation p.L122P 0.19 deleterious(0) possibly_damaging(0.829) TCGA-CZ-5466-01 1 152191542 152191542 C T HRNR Missense_Mutation p.G855S 0.16 unknown(0) TCGA-CZ-5466-01 1 152882732 152882732 G T IVL Missense_Mutation p.L153F 0.08 deleterious(0.01) unknown(0) TCGA-CZ-5466-01 1 200587085 200587085 T C KIF14 Missense_Mutation p.H256R 0.19 tolerated(0.1) benign(0.001) TCGA-CZ-5466-01 1 202733213 202733213 G A KDM5B Missense_Mutation p.R258C 0.19 deleterious(0) probably_damaging(0.953) TCGA-CZ-5466-01 1 205290624 205290624 G A NUAK2 Missense_Mutation p.H45Y 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-CZ-5466-01 1 248004727 248004727 G T OR11L1 Missense_Mutation p.L158M 0.29 deleterious(0.03) probably_damaging(0.961) TCGA-CZ-5466-01 1 40435189 40435189 C A MFSD2A Missense_Mutation p.S527R 0.33 tolerated(0.31) benign(0.187) TCGA-CZ-5466-01 1 43825663 43825663 C T CDC20 Missense_Mutation p.L151F 0.28 deleterious(0.01) probably_damaging(0.957) TCGA-CZ-5466-01 1 84679863 84679863 G T PRKACB Missense_Mutation p.D312Y 0.19 deleterious(0.01) benign(0.124) TCGA-CZ-5466-01 20 19665938 19665938 G C SLC24A3 Missense_Mutation p.E419D 0.23 tolerated(0.33) benign(0.179) TCGA-CZ-5466-01 20 43533772 43533772 G A YWHAB Silent p.T196T 0.15 TCGA-CZ-5466-01 22 24456572 24456572 C T CABIN1 Silent p.L529L 0.32 TCGA-CZ-5466-01 22 29449665 29449665 A - ZNRF3 3'UTR 0.23 TCGA-CZ-5466-01 22 32109361 32109361 A - PRR14L Frame_Shift_Del p.G1490Vfs*29 0.17 TCGA-CZ-5466-01 22 39380188 39380188 G A APOBEC3B Silent p.K42K 0.13 TCGA-CZ-5466-01 2 109381095 109381095 C T RANBP2 Missense_Mutation p.S1367L 0.19 deleterious(0.04) benign(0.034) TCGA-CZ-5466-01 2 109383602 109383602 G A RANBP2 Missense_Mutation p.A2203T 0.14 tolerated(0.16) benign(0.113) TCGA-CZ-5466-01 2 109383603 109383603 C T RANBP2 Missense_Mutation p.A2203V 0.15 deleterious(0.04) possibly_damaging(0.672) TCGA-CZ-5466-01 2 109383605 109383605 G A RANBP2 Missense_Mutation p.A2204T 0.12 tolerated(0.62) benign(0.002) TCGA-CZ-5466-01 2 153591619 153591620 CT - ARL6IP6 Frame_Shift_Del p.L190Ffs*18 0.17 TCGA-CZ-5466-01 2 170007491 170007491 A G LRP2 Silent p.A4169A 0.05 TCGA-CZ-5466-01 2 234969046 234969046 T C SPP2 Missense_Mutation p.S123P 0.08 deleterious(0.01) probably_damaging(0.966) TCGA-CZ-5466-01 2 85770896 85770896 A C MAT2A 3'UTR 0.15 TCGA-CZ-5466-01 3 140123504 140123504 T C CLSTN2 Missense_Mutation p.I178T 0.15 deleterious(0.02) benign(0.355) TCGA-CZ-5466-01 3 52643533 52643533 G T PBRM1 Nonsense_Mutation p.S788* 0.21 TCGA-CZ-5466-01 3 8787538 8787538 G A CAV3 Silent p.L147L 0.15 TCGA-CZ-5466-01 4 186366123 186366125 TGG C C4orf47 Frame_Shift_Del p.G241Nfs*7 0.21 TCGA-CZ-5466-01 4 55155210 55155210 C G PDGFRA Missense_Mutation p.P937A 0.18 tolerated(0.56) possibly_damaging(0.591) TCGA-CZ-5466-01 4 77292666 77292666 T G CCDC158 Missense_Mutation p.L351F 0.19 deleterious(0) probably_damaging(0.994) TCGA-CZ-5466-01 4 83858433 83858433 C T LIN54 Silent p.S517S 0.04 TCGA-CZ-5466-01 5 112178912 112178912 A G APC Missense_Mutation p.I2541V 0.15 benign(0.007) TCGA-CZ-5466-01 5 139942267 139942267 C T APBB3 Missense_Mutation p.S111N 0.12 tolerated(1) benign(0.004) TCGA-CZ-5466-01 5 140432455 140432455 C T PCDHB1 Missense_Mutation p.P467L 0.36 deleterious(0) probably_damaging(1) TCGA-CZ-5466-01 5 169474616 169474616 C T DOCK2 Missense_Mutation p.R1357W 0.23 deleterious(0) probably_damaging(0.997) TCGA-CZ-5466-01 5 176894265 176894265 C A DBN1 Missense_Mutation p.E184D 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-CZ-5466-01 5 475720 475720 A T SLC9A3 Missense_Mutation p.F736Y 0.14 tolerated(0.11) benign(0.059) TCGA-CZ-5466-01 5 63513323 63513323 G A RNF180 Intron 0.19 TCGA-CZ-5466-01 6 116981933 116981933 A C ZUFSP Silent p.V212V 0.17 TCGA-CZ-5466-01 6 138201233 138201233 C T TNFAIP3 Silent p.V644V 0.20 TCGA-CZ-5466-01 6 43272449 43272449 C T SLC22A7 Nonsense_Mutation p.Q545* 0.19 TCGA-CZ-5466-01 6 90358035 90358035 G C MDN1 Missense_Mutation p.S5407C 0.18 unknown(0) TCGA-CZ-5466-01 7 123672748 123672748 G - TMEM229A Frame_Shift_Del p.L104Wfs*32 0.31 TCGA-CZ-5466-01 7 129045730 129045730 G A AHCYL2 Missense_Mutation p.G399D 0.14 deleterious(0) probably_damaging(0.996) TCGA-CZ-5466-01 7 66260561 66260561 A T KCTD7 Missense_Mutation p.M193L 0.17 tolerated(1) benign(0) TCGA-CZ-5466-01 7 905604 905604 G T SUN1 Missense_Mutation p.S627I 0.33 deleterious(0) possibly_damaging(0.545) TCGA-CZ-5466-01 9 36091316 36091317 - T RECK Frame_Shift_Ins p.Y355Lfs*4 0.21 TCGA-CZ-5466-01 X 123195628 123195629 AG - STAG2 Frame_Shift_Del p.D515* 0.28 TCGA-CZ-5466-01 X 129483276 129483276 G T SLC25A14 Silent p.G123G 0.34 TCGA-CZ-5467-01 10 100904018 100904018 G A HPSE2 Missense_Mutation p.T196I 0.30 tolerated(0.15) benign(0.057) TCGA-CZ-5467-01 10 28274097 28274097 A G ARMC4 Silent p.N142N 0.08 TCGA-CZ-5467-01 10 97373858 97373858 T C ALDH18A1 Missense_Mutation p.I556V 0.28 tolerated(0.06) benign(0.043) TCGA-CZ-5467-01 11 110451792 110451792 G T ARHGAP20 Missense_Mutation p.D626E 0.38 tolerated(0.26) benign(0.033) TCGA-CZ-5467-01 11 36514141 36514141 G - TRAF6 Frame_Shift_Del p.P239Qfs*32 0.27 TCGA-CZ-5467-01 11 55944758 55944759 - T OR5J2 Frame_Shift_Ins p.A224Cfs*2 0.29 TCGA-CZ-5467-01 11 61897352 61897352 G A INCENP Missense_Mutation p.G118D 0.38 tolerated(0.2) unknown(0) TCGA-CZ-5467-01 12 104179176 104179176 C A NT5DC3 Silent p.T422T 0.35 TCGA-CZ-5467-01 12 52374764 52374764 T G ACVR1B Missense_Mutation p.F198V 0.35 deleterious(0) probably_damaging(0.999) TCGA-CZ-5467-01 12 53594099 53594099 C T ITGB7 Silent p.G43G 0.36 TCGA-CZ-5467-01 12 80615945 80615945 A G OTOGL Missense_Mutation p.I128V 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-CZ-5467-01 13 92345927 92345927 T A GPC5 Missense_Mutation p.M271K 0.29 tolerated(0.13) benign(0.021) TCGA-CZ-5467-01 13 94482723 94482723 C T GPC6 Silent p.T212T 0.44 TCGA-CZ-5467-01 14 101340922 101340922 A G MIR337 RNA 0.08 TCGA-CZ-5467-01 14 23530305 23530305 C T ACIN1 Silent p.L1229L 0.07 TCGA-CZ-5467-01 14 55218223 55218223 G T SAMD4A Nonsense_Mutation p.E382* 0.49 TCGA-CZ-5467-01 14 94465939 94465939 C T LINC00521 RNA 0.06 TCGA-CZ-5467-01 15 33916176 33916176 G T RYR3 Missense_Mutation p.Q842H 0.37 benign(0.001) TCGA-CZ-5467-01 15 40866002 40866002 T G RPUSD2 Missense_Mutation p.W394G 0.32 deleterious(0) probably_damaging(0.999) TCGA-CZ-5467-01 15 55964783 55964783 A G PRTG Missense_Mutation p.I634T 0.36 deleterious(0) possibly_damaging(0.88) TCGA-CZ-5467-01 15 77057685 77057685 G A SCAPER Missense_Mutation p.R536C 0.04 deleterious(0) probably_damaging(0.988) TCGA-CZ-5467-01 16 56717110 56717110 G A MT1X Missense_Mutation p.C21Y 0.21 deleterious(0.03) possibly_damaging(0.712) TCGA-CZ-5467-01 16 56717111 56717111 C T MT1X Silent p.C21C 0.20 TCGA-CZ-5467-01 16 82185072 82185074 AGA - MPHOSPH6 In_Frame_Del p.L71del 0.18 TCGA-CZ-5467-01 16 87493727 87493727 C G ZCCHC14 Missense_Mutation p.R57T 0.23 deleterious(0.03) probably_damaging(0.989) TCGA-CZ-5467-01 17 26686415 26686415 C T TMEM199 Silent p.N121N 0.34 TCGA-CZ-5467-01 17 46673821 46673821 G A HOXB6 Missense_Mutation p.A210V 0.32 deleterious(0.05) unknown(0) TCGA-CZ-5467-01 17 58022845 58022845 C T RP11-178C3.1 Nonsense_Mutation p.R39* 0.28 TCGA-CZ-5467-01 18 24496333 24496333 G C CHST9 Missense_Mutation p.Q408E 0.26 tolerated(1) benign(0.008) TCGA-CZ-5467-01 18 45567044 45567044 G A ZBTB7C Silent p.D145D 0.24 TCGA-CZ-5467-01 19 49134131 49134131 A T DBP Missense_Mutation p.V314E 0.50 deleterious(0) possibly_damaging(0.482) TCGA-CZ-5467-01 19 51874879 51874879 G A NKG7 3'UTR 0.35 TCGA-CZ-5467-01 19 54598464 54598464 C T OSCAR 3'UTR 0.43 TCGA-CZ-5467-01 19 55489137 55489137 C T NLRP2 Nonsense_Mutation p.R115* 0.27 TCGA-CZ-5467-01 19 56243988 56243988 A T NLRP9 Silent p.I403I 0.37 TCGA-CZ-5467-01 1 109635584 109635584 C G TMEM167B Missense_Mutation p.P28R 0.12 deleterious(0) probably_damaging(0.965) TCGA-CZ-5467-01 1 11894635 11894635 T G CLCN6 Missense_Mutation p.V594G 0.10 tolerated(0.39) benign(0.055) TCGA-CZ-5467-01 1 185108635 185108635 A C TRMT1L Missense_Mutation p.S396A 0.40 tolerated(0.51) benign(0.444) TCGA-CZ-5467-01 1 1920343 1920343 T A C1orf222 Missense_Mutation p.D37V 0.31 tolerated(0.17) probably_damaging(0.972) TCGA-CZ-5467-01 1 196748941 196748941 C T CFHR3 Missense_Mutation p.P90S 0.05 tolerated(1) benign(0.146) TCGA-CZ-5467-01 1 232607212 232607212 T A SIPA1L2 Silent p.A716A 0.33 TCGA-CZ-5467-01 1 62961314 62961314 A T DOCK7 Silent p.S1623S 0.29 TCGA-CZ-5467-01 20 33595391 33595391 C T TRPC4AP Missense_Mutation p.A550T 0.36 deleterious(0.01) possibly_damaging(0.527) TCGA-CZ-5467-01 21 33074137 33074137 A T SCAF4 Missense_Mutation p.D184E 0.35 probably_damaging(0.91) TCGA-CZ-5467-01 22 18376628 18376628 G A MICAL3 Silent p.L498L 0.21 TCGA-CZ-5467-01 22 25024856 25024856 C T GGT1 3'UTR 0.52 TCGA-CZ-5467-01 22 32589043 32589043 C T RFPL2 Silent p.G134G 0.34 TCGA-CZ-5467-01 2 112625654 112625654 A C ANAPC1 Missense_Mutation p.F211V 0.29 deleterious(0) probably_damaging(0.912) TCGA-CZ-5467-01 2 11706697 11706697 G T GREB1 Missense_Mutation p.K123N 0.32 deleterious(0) probably_damaging(0.998) TCGA-CZ-5467-01 2 11706699 11706699 C A GREB1 Missense_Mutation p.S124Y 0.29 deleterious(0) possibly_damaging(0.684) TCGA-CZ-5467-01 2 152553192 152553192 C A NEB Missense_Mutation p.V510F 0.34 possibly_damaging(0.802) TCGA-CZ-5467-01 2 160205332 160205332 C A BAZ2B Missense_Mutation p.G1717V 0.08 probably_damaging(1) TCGA-CZ-5467-01 2 20237323 20237323 T G LAPTM4A Silent p.S95S 0.32 TCGA-CZ-5467-01 2 210887820 210887820 C G KANSL1L Missense_Mutation p.Q939H 0.35 tolerated(0.09) benign(0.007) TCGA-CZ-5467-01 3 173322838 173322838 C T NLGN1 Silent p.S150S 0.30 TCGA-CZ-5467-01 3 182870208 182870208 A G LAMP3 Silent p.L281L 0.06 TCGA-CZ-5467-01 3 52729443 52729443 T C GLT8D1 Missense_Mutation p.N269S 0.36 deleterious(0) possibly_damaging(0.582) TCGA-CZ-5467-01 3 56789107 56789107 G C ARHGEF3 Missense_Mutation p.P125A 0.42 tolerated(0.1) benign(0.003) TCGA-CZ-5467-01 4 166910623 166910623 G A TLL1 Missense_Mutation p.G87E 0.07 tolerated(1) benign(0.001) TCGA-CZ-5467-01 4 55131181 55131181 G T PDGFRA Missense_Mutation p.V242L 0.34 tolerated(0.53) benign(0.314) TCGA-CZ-5467-01 4 73985963 73985963 G T ANKRD17 Missense_Mutation p.P1314H 0.32 probably_damaging(0.968) TCGA-CZ-5467-01 5 55412459 55412459 G T ANKRD55 Silent p.L316L 0.25 TCGA-CZ-5467-01 5 82835015 82835015 G T VCAN Nonsense_Mutation p.E2065* 0.32 TCGA-CZ-5467-01 6 129588336 129588336 C A LAMA2 Missense_Mutation p.S765Y 0.30 deleterious(0.03) benign(0.392) TCGA-CZ-5467-01 6 56469946 56469946 C T DST Intron 0.30 TCGA-CZ-5467-01 7 108524166 108524166 A G C7orf66 Silent p.I82I 0.32 TCGA-CZ-5467-01 7 148511134 148511134 A T EZH2 Missense_Mutation p.C590S 0.06 deleterious(0.02) benign(0.111) TCGA-CZ-5467-01 7 30538534 30538534 C T GGCT Missense_Mutation p.G103E 0.31 deleterious(0) probably_damaging(0.993) TCGA-CZ-5467-01 7 50737542 50737542 G A GRB10 Silent p.D127D 0.41 TCGA-CZ-5467-01 8 121019105 121019105 G C DEPTOR Missense_Mutation p.K329N 0.13 deleterious(0) probably_damaging(0.938) TCGA-CZ-5467-01 8 24167416 24167416 G T ADAM28 Nonsense_Mutation p.E54* 0.04 TCGA-CZ-5467-01 9 88692459 88692459 C T GOLM1 Silent p.E59E 0.35 TCGA-CZ-5467-01 X 134483227 134483227 T A ZNF449 Missense_Mutation p.F183I 0.55 tolerated(0.1) benign(0.395) TCGA-CZ-5467-01 X 1467340 1467340 A G IL3RA Missense_Mutation p.Y67C 0.07 deleterious(0) probably_damaging(0.97) TCGA-CZ-5467-01 X 34150174 34150174 G A FAM47A Silent p.D74D 0.06 TCGA-CZ-5467-01 X 47487501 47487501 C T CFP Missense_Mutation p.E135K 0.36 deleterious(0.03) possibly_damaging(0.725) TCGA-CZ-5467-01 X 53246339 53246339 T A KDM5C Nonsense_Mutation p.R215* 0.53 TCGA-CZ-5467-01 X 57620976 57620976 C T ZXDB 3'UTR 0.47 TCGA-CZ-5468-01 10 35819094 35819094 C G CCNY Missense_Mutation p.Q168E 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-CZ-5468-01 10 409187 409187 G T DIP2C Missense_Mutation p.P848T 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-CZ-5468-01 10 75185797 75185797 C T MSS51 Missense_Mutation p.G281R 0.31 tolerated(0.46) benign(0.006) TCGA-CZ-5468-01 10 7829795 7829795 C T KIN Silent p.Q34Q 0.29 TCGA-CZ-5468-01 11 119205888 119205888 C A RNF26 Missense_Mutation p.T19N 0.44 tolerated(0.37) unknown(0) TCGA-CZ-5468-01 11 126283944 126283944 C A ST3GAL4 3'UTR 0.18 TCGA-CZ-5468-01 11 133789678 133789678 C T IGSF9B Silent p.L1314L 0.62 TCGA-CZ-5468-01 11 18159570 18159570 T A MRGPRX3 Missense_Mutation p.F274Y 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-CZ-5468-01 11 20104550 20104550 C G NAV2 Intron 0.10 TCGA-CZ-5468-01 11 441994 441994 C T ANO9 5'UTR 0.29 TCGA-CZ-5468-01 11 4903098 4903098 C - OR51T1 Frame_Shift_Del p.S17Ffs*4 0.22 TCGA-CZ-5468-01 11 60899492 60899492 T G VPS37C Silent p.R290R 0.24 TCGA-CZ-5468-01 11 77931466 77931466 C T GAB2 Missense_Mutation p.V596I 0.29 tolerated(0.4) benign(0.003) TCGA-CZ-5468-01 12 122831951 122831951 T C CLIP1 Missense_Mutation p.K493E 0.57 deleterious(0) probably_damaging(0.977) TCGA-CZ-5468-01 12 46321850 46321850 T C SCAF11 Missense_Mutation p.H545R 0.57 tolerated(0.38) benign(0.035) TCGA-CZ-5468-01 12 53043743 53043743 G A KRT2 Silent p.I272I 0.28 TCGA-CZ-5468-01 12 57881962 57881962 T A MARS Missense_Mutation p.I30N 0.81 tolerated(0.11) benign(0.221) TCGA-CZ-5468-01 12 80940449 80940449 G A PTPRQ Missense_Mutation p.V1326I 0.52 tolerated(0.52) benign(0.003) TCGA-CZ-5468-01 13 48669155 48669155 C T MED4 Silent p.V20V 0.33 TCGA-CZ-5468-01 13 53624868 53624868 C T OLFM4 Silent p.L499L 0.18 TCGA-CZ-5468-01 13 61102560 61102560 C T TDRD3 Nonsense_Mutation p.Q401* 0.07 TCGA-CZ-5468-01 14 39763224 39763224 G A CTAGE5 Silent p.R177R 0.39 TCGA-CZ-5468-01 14 64152863 64152863 A C SGPP1 Missense_Mutation p.F429C 0.35 tolerated(0.34) benign(0.021) TCGA-CZ-5468-01 15 40949238 40949238 A T CASC5 Splice_Site p.X2188_splice 0.35 TCGA-CZ-5468-01 15 55841181 55841181 C T PYGO1 Missense_Mutation p.G21E 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-CZ-5468-01 15 63092888 63092888 G A TLN2 Missense_Mutation p.V2133I 0.32 deleterious(0) possibly_damaging(0.895) TCGA-CZ-5468-01 15 64968215 64968215 C A ZNF609 Silent p.P1054P 0.13 TCGA-CZ-5468-01 15 75648339 75648339 G T MAN2C1 Missense_Mutation p.H1028N 0.18 tolerated(0.49) benign(0.062) TCGA-CZ-5468-01 16 109255 109255 C T RHBDF1 Silent p.L662L 0.17 TCGA-CZ-5468-01 16 1515299 1515299 C T CLCN7 Missense_Mutation p.S61N 0.22 tolerated(1) benign(0) TCGA-CZ-5468-01 16 15826565 15826565 C G MYH11 Missense_Mutation p.R1176S 0.13 probably_damaging(0.999) TCGA-CZ-5468-01 16 17202837 17202837 A G XYLT1 Silent p.N865N 0.27 TCGA-CZ-5468-01 16 19460864 19460864 T G TMC5 Missense_Mutation p.V320G 0.28 tolerated(0.11) benign(0.004) TCGA-CZ-5468-01 16 2200042 2200042 T A RAB26 Missense_Mutation p.I99N 0.27 deleterious(0) probably_damaging(1) TCGA-CZ-5468-01 16 4925034 4925034 A G UBN1 Missense_Mutation p.T875A 0.11 tolerated_low_confidence(0.25) benign(0.002) TCGA-CZ-5468-01 16 71951006 71951006 G A IST1 Missense_Mutation p.R122Q 0.19 deleterious(0.01) possibly_damaging(0.735) TCGA-CZ-5468-01 16 76501348 76501348 T A CNTNAP4 Missense_Mutation p.L455Q 0.17 deleterious(0) possibly_damaging(0.873) TCGA-CZ-5468-01 17 16735046 16735046 G A KRT16P2 RNA 0.38 TCGA-CZ-5468-01 17 37646824 37646824 T G CDK12 Missense_Mutation p.L649R 0.15 possibly_damaging(0.854) TCGA-CZ-5468-01 17 41931340 41931340 C G CD300LG Missense_Mutation p.P216R 0.16 tolerated(0.09) possibly_damaging(0.656) TCGA-CZ-5468-01 17 53345220 53345220 C T HLF Missense_Mutation p.P75L 0.33 deleterious(0) possibly_damaging(0.804) TCGA-CZ-5468-01 17 56349016 56349016 C T MPO Missense_Mutation p.R677Q 0.29 deleterious(0) probably_damaging(1) TCGA-CZ-5468-01 17 60814440 60814440 C A MARCH10 Silent p.G263G 0.22 TCGA-CZ-5468-01 17 60814441 60814441 C G MARCH10 Missense_Mutation p.G263A 0.21 deleterious(0.01) possibly_damaging(0.706) TCGA-CZ-5468-01 17 71420174 71420174 G A SDK2 Silent p.R547R 0.42 TCGA-CZ-5468-01 17 74564850 74564850 A C ST6GALNAC2 Missense_Mutation p.S268A 0.28 benign(0.344) TCGA-CZ-5468-01 17 75316405 75316405 A G SEPT9 Intron 0.17 TCGA-CZ-5468-01 17 78321744 78321744 A G RNF213 Silent p.A3203A 0.12 TCGA-CZ-5468-01 18 29410858 29410858 G A TRAPPC8 Silent p.L1390L 0.22 TCGA-CZ-5468-01 18 47799227 47799227 T A MBD1 Silent p.P561P 0.21 TCGA-CZ-5468-01 18 63530103 63530103 T A CDH7 Missense_Mutation p.L605H 0.18 deleterious(0) probably_damaging(0.996) TCGA-CZ-5468-01 19 36036175 36036175 C T GAPDHS 3'UTR 0.33 TCGA-CZ-5468-01 19 43262176 43262176 G T PSG8 Missense_Mutation p.D229E 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-CZ-5468-01 19 45391608 45391608 T C PVRL2 Missense_Mutation p.F530S 0.34 tolerated(0.12) possibly_damaging(0.795) TCGA-CZ-5468-01 19 46319803 46319803 G T SYMPK Silent p.I1097I 0.41 TCGA-CZ-5468-01 19 53269213 53269213 C G ZNF600 Missense_Mutation p.R599T 0.14 tolerated(0.63) benign(0.06) TCGA-CZ-5468-01 19 53269727 53269727 C A ZNF600 Missense_Mutation p.D428Y 0.16 tolerated(1) benign(0.266) TCGA-CZ-5468-01 19 53269746 53269746 C A ZNF600 Missense_Mutation p.K421N 0.15 deleterious(0) probably_damaging(0.996) TCGA-CZ-5468-01 1 112031474 112031474 G C ADORA3 Silent p.A210A 0.18 TCGA-CZ-5468-01 1 150445629 150445629 C A RPRD2 Nonsense_Mutation p.S1402* 0.21 TCGA-CZ-5468-01 1 153913052 153913052 A T DENND4B Missense_Mutation p.Y453N 0.31 deleterious(0) possibly_damaging(0.892) TCGA-CZ-5468-01 1 154960848 154960848 G A FLAD1 Missense_Mutation p.G214R 0.34 tolerated(0.07) benign(0.12) TCGA-CZ-5468-01 1 155205090 155205090 A T GBA Silent p.P467P 0.34 TCGA-CZ-5468-01 1 175355202 175355202 G A TNR Silent p.N581N 0.18 TCGA-CZ-5468-01 1 19471346 19471346 G A UBR4 Silent p.Y2667Y 0.17 TCGA-CZ-5468-01 1 196762628 196762628 C T CFHR3 Silent p.Y326Y 0.15 TCGA-CZ-5468-01 1 200971340 200971340 G A KIF21B Missense_Mutation p.R451C 0.06 deleterious(0) probably_damaging(0.988) TCGA-CZ-5468-01 1 202725626 202725626 C A KDM5B Missense_Mutation p.V406F 0.15 deleterious(0) probably_damaging(0.998) TCGA-CZ-5468-01 1 227288695 227288695 T C CDC42BPA Silent p.E749E 0.38 TCGA-CZ-5468-01 1 27736595 27736595 T C WASF2 Silent p.P310P 0.10 TCGA-CZ-5468-01 1 43649511 43649511 G A WDR65 Missense_Mutation p.G242S 0.39 tolerated(0.49) benign(0.015) TCGA-CZ-5468-01 1 45796197 45796197 C - MUTYH Frame_Shift_Del p.T501Pfs*67 0.30 TCGA-CZ-5468-01 1 45808092 45808092 T G TOE1 Missense_Mutation p.F177V 0.29 deleterious(0.03) possibly_damaging(0.893) TCGA-CZ-5468-01 1 900441 900441 G A KLHL17 Missense_Mutation p.R600K 0.29 tolerated(0.81) benign(0.194) TCGA-CZ-5468-01 1 94466632 94466632 C A ABCA4 Missense_Mutation p.Q2104H 0.41 tolerated(0.21) benign(0.033) TCGA-CZ-5468-01 1 94568687 94568687 G A ABCA4 Nonsense_Mutation p.R152* 0.30 TCGA-CZ-5468-01 1 94697168 94697168 C A ARHGAP29 5'UTR 0.17 TCGA-CZ-5468-01 20 25282909 25282909 A C ABHD12 Missense_Mutation p.L368R 0.43 deleterious(0.04) probably_damaging(0.988) TCGA-CZ-5468-01 20 3103217 3103217 C T UBOX5 Missense_Mutation p.G23D 0.20 deleterious(0) possibly_damaging(0.899) TCGA-CZ-5468-01 20 34459730 34459730 C A PHF20 Missense_Mutation p.Q421K 0.10 tolerated(0.53) benign(0) TCGA-CZ-5468-01 20 7963240 7963240 A T TMX4 Missense_Mutation p.H236Q 0.45 tolerated(0.43) benign(0.002) TCGA-CZ-5468-01 21 15579141 15579141 C T LIPI Missense_Mutation p.R35K 0.12 tolerated(1) benign(0.002) TCGA-CZ-5468-01 21 30380357 30380357 A G RWDD2B Silent p.C150C 0.54 TCGA-CZ-5468-01 21 41741148 41741148 G A DSCAM Missense_Mutation p.T178M 0.45 tolerated(0.22) probably_damaging(0.909) TCGA-CZ-5468-01 22 22024876 22024876 G A PPIL2 Missense_Mutation p.R35H 0.40 deleterious(0.04) benign(0.055) TCGA-CZ-5468-01 22 40283658 40283658 G A ENTHD1 Missense_Mutation p.P32L 0.42 deleterious(0) probably_damaging(1) TCGA-CZ-5468-01 22 50216883 50216883 G A BRD1 Silent p.Y361Y 0.10 TCGA-CZ-5468-01 2 105977880 105977880 T C FHL2 Missense_Mutation p.T234A 0.14 tolerated(1) benign(0.014) TCGA-CZ-5468-01 2 109100625 109100625 G C GCC2 Missense_Mutation p.L1157F 0.21 deleterious(0) probably_damaging(0.997) TCGA-CZ-5468-01 2 11389808 11389814 GGCAAAG - ROCK2 Frame_Shift_Del p.F146Ifs*21 0.22 TCGA-CZ-5468-01 2 128477700 128477700 T A WDR33 Silent p.G633G 0.11 TCGA-CZ-5468-01 2 1642647 1642647 G C PXDN Missense_Mutation p.Q1393E 0.14 tolerated(0.22) benign(0.033) TCGA-CZ-5468-01 2 178095480 178095480 A T NFE2L2 3'UTR 0.22 TCGA-CZ-5468-01 2 215838696 215838696 A C ABCA12 Missense_Mutation p.C1847G 0.42 deleterious(0) probably_damaging(0.997) TCGA-CZ-5468-01 2 219529592 219529592 A G RNF25 Missense_Mutation p.L224P 0.42 tolerated(0.32) benign(0.009) TCGA-CZ-5468-01 2 225668898 225668898 G T DOCK10 Missense_Mutation p.S1400Y 0.38 deleterious(0.03) possibly_damaging(0.498) TCGA-CZ-5468-01 2 234526756 234526757 - A UGT1A8 Frame_Shift_Ins p.Y136Ifs*8 0.30 TCGA-CZ-5468-01 2 28532988 28532988 C T BRE Intron 0.12 TCGA-CZ-5468-01 2 50733648 50733648 G T NRXN1 Missense_Mutation p.Q868K 0.30 tolerated(0.9) benign(0.093) TCGA-CZ-5468-01 2 61431456 61431456 T C USP34 Missense_Mutation p.N3107D 0.34 tolerated(0.05) possibly_damaging(0.48) TCGA-CZ-5468-01 2 74808954 74808954 C T M1AP Missense_Mutation p.D206N 0.14 deleterious(0) possibly_damaging(0.798) TCGA-CZ-5468-01 2 97285435 97285435 G T KANSL3 Silent p.R151R 0.19 TCGA-CZ-5468-01 2 99155379 99155379 T G INPP4A Missense_Mutation p.L202W 0.32 deleterious(0.03) possibly_damaging(0.819) TCGA-CZ-5468-01 3 102181210 102181210 A C ZPLD1 Missense_Mutation p.N239T 0.39 deleterious(0) probably_damaging(0.927) TCGA-CZ-5468-01 3 12856884 12856884 G T CAND2 Missense_Mutation p.M417I 0.47 tolerated(0.23) benign(0.001) TCGA-CZ-5468-01 3 158387254 158387254 A G LXN Missense_Mutation p.M113T 0.33 tolerated(0.88) benign(0.002) TCGA-CZ-5468-01 3 165503969 165503969 A T BCHE Missense_Mutation p.W550R 0.13 deleterious(0) probably_damaging(1) TCGA-CZ-5468-01 3 167000224 167000224 T G ZBBX Missense_Mutation p.S686R 0.35 tolerated(0.15) benign(0.022) TCGA-CZ-5468-01 3 172502507 172502507 C G ECT2 Missense_Mutation p.A580G 0.30 tolerated(0.09) benign(0.107) TCGA-CZ-5468-01 3 39179047 39179047 G T TTC21A Missense_Mutation p.R1181L 0.34 deleterious(0) probably_damaging(0.95) TCGA-CZ-5468-01 3 62385148 62385148 C A CADPS Missense_Mutation p.S1332I 0.42 deleterious(0.02) benign(0.403) TCGA-CZ-5468-01 3 9786096 9786096 A C BRPF1 Missense_Mutation p.M942L 0.33 tolerated(1) benign(0) TCGA-CZ-5468-01 4 100871392 100871392 T C H2AFZ 5'UTR 0.29 TCGA-CZ-5468-01 4 128905506 128905506 C A C4orf29 Missense_Mutation p.F35L 0.32 deleterious(0.03) benign(0.168) TCGA-CZ-5468-01 4 138453257 138453257 G A PCDH18 5'UTR 0.31 TCGA-CZ-5468-01 4 185694256 185694256 T C ACSL1 Silent p.S298S 0.33 TCGA-CZ-5468-01 4 82126026 82126026 G A PRKG2 Missense_Mutation p.S59L 0.17 tolerated(0.31) benign(0.021) TCGA-CZ-5468-01 4 8609117 8609117 G A CPZ Missense_Mutation p.E398K 0.11 tolerated(0.12) possibly_damaging(0.517) TCGA-CZ-5468-01 4 89607937 89607937 T A HERC3 Missense_Mutation p.F853Y 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-CZ-5468-01 5 112176941 112176941 G T APC Missense_Mutation p.A1884S 0.11 benign(0) TCGA-CZ-5468-01 5 134002663 134002663 T A SEC24A Missense_Mutation p.F239Y 0.42 tolerated(0.79) benign(0.001) TCGA-CZ-5468-01 5 135561036 135561036 G C TRPC7 Missense_Mutation p.R757G 0.39 tolerated(0.12) benign(0.081) TCGA-CZ-5468-01 5 145643071 145643071 G C RBM27 Missense_Mutation p.Q736H 0.18 tolerated(0.64) benign(0.439) TCGA-CZ-5468-01 5 158697539 158697539 A T UBLCP1 Missense_Mutation p.E112D 0.16 tolerated(0.27) benign(0.008) TCGA-CZ-5468-01 5 174869226 174869226 A T DRD1 Missense_Mutation p.C293S 0.20 deleterious(0) probably_damaging(0.999) TCGA-CZ-5468-01 5 55407454 55407454 T C ANKRD55 Missense_Mutation p.D374G 0.40 tolerated_low_confidence(0.07) benign(0.001) TCGA-CZ-5468-01 5 82815673 82815673 T G VCAN Silent p.T516T 0.29 TCGA-CZ-5468-01 5 93987546 93987546 A C ANKRD32 Missense_Mutation p.N293T 0.16 tolerated(0.5) benign(0.002) TCGA-CZ-5468-01 6 101248212 101248212 A T ASCC3 Missense_Mutation p.L364H 0.32 tolerated(0.2) benign(0.149) TCGA-CZ-5468-01 6 111694884 111694885 - T REV3L Frame_Shift_Ins p.N1558Kfs*2 0.33 TCGA-CZ-5468-01 6 30916609 30916609 A T DPCR1 Missense_Mutation p.E123V 0.36 deleterious(0.02) possibly_damaging(0.801) TCGA-CZ-5468-01 6 31323941 31323941 T A HLA-B Intron 0.58 TCGA-CZ-5468-01 6 64395089 64395089 A T PHF3 Missense_Mutation p.K489I 0.29 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-CZ-5468-01 7 103008447 103008447 C T PSMC2 Silent p.V416V 0.19 TCGA-CZ-5468-01 7 103293088 103293088 A - RELN Frame_Shift_Del p.F558Sfs*14 0.22 TCGA-CZ-5468-01 7 123267202 123267202 G T ASB15 Missense_Mutation p.V246L 0.20 tolerated(0.08) benign(0.038) TCGA-CZ-5468-01 7 123672673 123672673 G A TMEM229A Missense_Mutation p.H129Y 0.14 tolerated(0.62) benign(0.264) TCGA-CZ-5468-01 7 128434749 128434749 G A CCDC136 Silent p.G91G 0.19 TCGA-CZ-5468-01 7 134618264 134618264 A T CALD1 Silent p.S248S 0.07 TCGA-CZ-5468-01 7 138958118 138958118 A G UBN2 Missense_Mutation p.I597M 0.49 tolerated(1) possibly_damaging(0.544) TCGA-CZ-5468-01 7 40134425 40134425 A G CDK13 Missense_Mutation p.Y1462C 0.47 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CZ-5468-01 7 64169511 64169511 G A ZNF107 3'UTR 0.20 TCGA-CZ-5468-01 7 64437831 64437831 G A ZNF117 3'UTR 0.20 TCGA-CZ-5468-01 7 82595299 82595299 C - PCLO Frame_Shift_Del p.V1269Yfs*49 0.32 TCGA-CZ-5468-01 7 88964500 88964500 G A ZNF804B Missense_Mutation p.S735N 0.05 tolerated(0.27) benign(0.001) TCGA-CZ-5468-01 7 88966113 88966113 G A ZNF804B Missense_Mutation p.A1273T 0.09 tolerated(0.47) benign(0.129) TCGA-CZ-5468-01 7 99722440 99722440 G C CNPY4 Missense_Mutation p.E226Q 0.17 tolerated_low_confidence(0.21) benign(0) TCGA-CZ-5468-01 8 124265779 124265779 A T ZHX1 Missense_Mutation p.L803H 0.34 deleterious(0) probably_damaging(0.997) TCGA-CZ-5468-01 8 12879542 12879542 G C KIAA1456 Missense_Mutation p.G452R 0.22 tolerated_low_confidence(0.1) benign(0) TCGA-CZ-5468-01 8 135622881 135622881 C G ZFAT Missense_Mutation p.E156Q 0.10 deleterious(0.05) possibly_damaging(0.778) TCGA-CZ-5468-01 8 141559351 141559351 G C AGO2 Missense_Mutation p.P484A 0.12 tolerated(0.16) benign(0.422) TCGA-CZ-5468-01 8 141559352 141559352 C A AGO2 Missense_Mutation p.M483I 0.12 tolerated(0.06) possibly_damaging(0.603) TCGA-CZ-5468-01 8 145751849 145751849 C T C8orf82 3'UTR 0.27 TCGA-CZ-5468-01 8 17612789 17612791 ATG - MTUS1 In_Frame_Del p.H176del 0.17 TCGA-CZ-5468-01 8 67968826 67968826 G - COPS5 Frame_Shift_Del p.P196Lfs*16 0.26 TCGA-CZ-5468-01 9 12708083 12708083 A G TYRP1 Missense_Mutation p.T450A 0.19 tolerated(0.7) benign(0.001) TCGA-CZ-5468-01 9 140136454 140136454 G T TUBB4B Silent p.R86R 0.10 TCGA-CZ-5468-01 9 33469655 33469655 T A NOL6 Missense_Mutation p.Q190L 0.40 deleterious(0) probably_damaging(0.983) TCGA-CZ-5468-01 9 77632363 77632363 T C C9orf41 Missense_Mutation p.T78A 0.47 tolerated(0.79) benign(0.005) TCGA-CZ-5468-01 X 3235733 3235733 G A MXRA5 Missense_Mutation p.P1997S 0.74 tolerated(0.4) benign(0.057) TCGA-CZ-5469-01 10 101567974 101568006 CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG - ABCC2 Splice_Site p.X602_splice 0.39 TCGA-CZ-5469-01 11 30921891 30921891 A G DCDC1 Splice_Site p.X1552_splice 0.20 TCGA-CZ-5469-01 11 68213944 68213944 T C LRP5 Missense_Mutation p.L1510P 0.08 tolerated(0.21) possibly_damaging(0.498) TCGA-CZ-5469-01 12 124116921 124116921 G A EIF2B1 Missense_Mutation p.T29M 0.38 deleterious(0.01) probably_damaging(0.933) TCGA-CZ-5469-01 12 124116922 124116922 T A EIF2B1 Missense_Mutation p.T29S 0.38 tolerated(0.08) benign(0.068) TCGA-CZ-5469-01 12 130941167 130941167 A G RIMBP2 Missense_Mutation p.F61L 0.31 deleterious(0.05) benign(0.003) TCGA-CZ-5469-01 12 50831576 50831576 T C LARP4 Silent p.R198R 0.05 TCGA-CZ-5469-01 12 53011976 53011977 - T KRT73 Frame_Shift_Ins p.S112Efs*13 0.23 TCGA-CZ-5469-01 12 7947298 7947298 C T NANOG Silent p.P175P 0.45 TCGA-CZ-5469-01 13 111371678 111371678 G T ING1 Missense_Mutation p.R223L 0.29 deleterious(0.04) probably_damaging(0.989) TCGA-CZ-5469-01 15 28267703 28267703 T G OCA2 Missense_Mutation p.Y197S 0.57 deleterious(0.03) benign(0.213) TCGA-CZ-5469-01 15 68118891 68118891 T C SKOR1 Missense_Mutation p.F428S 0.08 deleterious_low_confidence(0.02) benign(0.428) TCGA-CZ-5469-01 15 86118435 86118435 C T AKAP13 Missense_Mutation p.H246Y 0.20 tolerated(0.1) probably_damaging(0.994) TCGA-CZ-5469-01 16 23360188 23360188 A G SCNN1B Missense_Mutation p.M90V 0.50 deleterious(0.01) possibly_damaging(0.644) TCGA-CZ-5469-01 16 24583810 24583810 A C RBBP6 3'UTR 0.35 TCGA-CZ-5469-01 16 2983245 2983245 G A FLYWCH1 Missense_Mutation p.C303Y 0.58 deleterious(0) benign(0.016) TCGA-CZ-5469-01 16 3406081 3406081 G A OR2C1 Silent p.L47L 0.47 TCGA-CZ-5469-01 16 85120766 85120766 G C KIAA0513 Missense_Mutation p.D394H 0.36 tolerated(0.06) benign(0.077) TCGA-CZ-5469-01 17 27286442 27286442 G A SEZ6 Missense_Mutation p.P607L 0.34 deleterious(0) probably_damaging(1) TCGA-CZ-5469-01 17 73500959 73500959 C T CASKIN2 Missense_Mutation p.E376K 0.42 tolerated(0.37) benign(0.017) TCGA-CZ-5469-01 18 51809261 51809261 G A POLI Missense_Mutation p.R284H 0.11 tolerated(0.95) benign(0) TCGA-CZ-5469-01 19 15905371 15905371 C A OR10H5 Missense_Mutation p.H171Q 0.40 tolerated(0.11) benign(0.003) TCGA-CZ-5469-01 19 52394722 52394722 C T ZNF649 Missense_Mutation p.E223K 0.42 tolerated(0.36) possibly_damaging(0.771) TCGA-CZ-5469-01 1 110170727 110170727 C G AMPD2 Missense_Mutation p.S422W 0.38 deleterious(0) probably_damaging(0.999) TCGA-CZ-5469-01 1 153533880 153533880 C T S100A2 3'UTR 0.08 TCGA-CZ-5469-01 1 155002622 155002622 G A DCST2 Missense_Mutation p.T372M 0.23 tolerated(0.13) benign(0.008) TCGA-CZ-5469-01 1 155764938 155764938 T C GON4L Silent p.E550E 0.42 TCGA-CZ-5469-01 1 155764940 155764940 C T GON4L Missense_Mutation p.E550K 0.43 deleterious(0) possibly_damaging(0.486) TCGA-CZ-5469-01 1 22222714 22222714 C T HSPG2 Silent p.S51S 0.26 TCGA-CZ-5469-01 1 32050373 32050373 G T TINAGL1 Missense_Mutation p.C226F 0.24 deleterious(0) probably_damaging(0.995) TCGA-CZ-5469-01 1 36755253 36755253 C T THRAP3 Nonsense_Mutation p.R545* 0.38 TCGA-CZ-5469-01 20 47244458 47244458 G A PREX1 Missense_Mutation p.R1604W 0.79 deleterious(0) probably_damaging(1) TCGA-CZ-5469-01 21 15858235 15858235 A T SAMSN1 Nonstop_Mutation p.*442Rext*18 0.05 TCGA-CZ-5469-01 21 31812784 31812784 C A KRTAP15-1 Missense_Mutation p.L47I 0.36 tolerated(0.06) benign(0.056) TCGA-CZ-5469-01 22 20929497 20929497 T C MED15 Missense_Mutation p.L417S 0.36 tolerated_low_confidence(0.05) unknown(0) TCGA-CZ-5469-01 22 24056489 24056489 A G KB-1572G7.2 RNA 0.28 TCGA-CZ-5469-01 22 42335169 42335169 C A CENPM Missense_Mutation p.R145L 0.44 deleterious(0) probably_damaging(0.976) TCGA-CZ-5469-01 2 65300044 65300044 C A CEP68 Missense_Mutation p.P605Q 0.15 tolerated(0.07) possibly_damaging(0.582) TCGA-CZ-5469-01 2 97505515 97505515 T C ANKRD23 Silent p.K257K 0.27 TCGA-CZ-5469-01 2 99226122 99226122 G T UNC50 Intron 0.14 TCGA-CZ-5469-01 3 129308262 129308262 C T PLXND1 Missense_Mutation p.V474M 0.28 deleterious(0) probably_damaging(1) TCGA-CZ-5469-01 3 132211264 132211275 GATGATAGAGAA - DNAJC13 In_Frame_Del p.M1211_K1214del 0.27 TCGA-CZ-5469-01 3 138023808 138023808 G C NME9 Missense_Mutation p.T172S 0.46 tolerated(0.53) benign(0.014) TCGA-CZ-5469-01 3 167000169 167000169 G A ZBBX Missense_Mutation p.S704L 0.22 tolerated(0.82) probably_damaging(0.946) TCGA-CZ-5469-01 3 195515059 195515059 G A MUC4 Missense_Mutation p.T1131I 0.41 unknown(0) TCGA-CZ-5469-01 3 48215854 48215854 G T CDC25A Missense_Mutation p.P284T 0.79 tolerated(1) benign(0.023) TCGA-CZ-5469-01 3 52441261 52441261 A C BAP1 Missense_Mutation p.F170C 0.74 deleterious(0) probably_damaging(0.999) TCGA-CZ-5469-01 4 186599615 186599615 C T SORBS2 Missense_Mutation p.V73I 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-CZ-5469-01 5 139216573 139216573 G A PSD2 Missense_Mutation p.M527I 0.08 tolerated(0.53) benign(0.088) TCGA-CZ-5469-01 5 140250599 140250599 C T PCDHA11 Silent p.D637D 0.21 TCGA-CZ-5469-01 5 140389837 140389837 G T PCDHAC1 3'UTR 0.09 TCGA-CZ-5469-01 5 140390965 140390965 C T PCDHAC1 3'UTR 0.46 TCGA-CZ-5469-01 6 143093080 143093080 C T HIVEP2 Silent p.A932A 0.51 TCGA-CZ-5469-01 6 31237140 31237140 A T HLA-C Silent p.S357S 0.16 TCGA-CZ-5469-01 6 72892128 72892128 G T RIMS1 Missense_Mutation p.R318S 0.11 tolerated(0.11) probably_damaging(0.989) TCGA-CZ-5469-01 6 84302945 84302945 G A SNAP91 Missense_Mutation p.A577V 0.41 tolerated(0.21) probably_damaging(0.981) TCGA-CZ-5469-01 7 104844182 104844182 G C SRPK2 Missense_Mutation p.P41R 0.26 tolerated(0.26) unknown(0) TCGA-CZ-5469-01 7 116918296 116918296 G C WNT2 Missense_Mutation p.C332W 0.23 deleterious(0) probably_damaging(0.999) TCGA-CZ-5469-01 7 134212620 134212620 G A AKR1B10 5'UTR 0.14 TCGA-CZ-5469-01 8 74440017 74440017 C A STAU2 Intron 0.40 TCGA-CZ-5469-01 X 152720472 152720472 T A HAUS7 Intron 0.89 TCGA-CZ-5469-01 X 48417687 48417687 T C TBC1D25 Silent p.L220L 0.12 TCGA-CZ-5469-01 X 71358471 71358471 C T NHSL2 Missense_Mutation p.A358V 0.87 tolerated(0.15) benign(0.019) TCGA-CZ-5469-01 X 73963362 73963362 T C KIAA2022 Missense_Mutation p.T344A 0.83 deleterious(0.03) benign(0.228) TCGA-CZ-5470-01 10 21971160 21971160 C G MLLT10 Nonsense_Mutation p.S558* 0.03 TCGA-CZ-5470-01 10 33199315 33199315 T C ITGB1 Missense_Mutation p.Y667C 0.34 tolerated(0.06) possibly_damaging(0.519) TCGA-CZ-5470-01 11 118427645 118427647 TCA - IFT46 In_Frame_Del p.D104del 0.27 TCGA-CZ-5470-01 12 54764794 54764794 C - ZNF385A Frame_Shift_Del p.E251Nfs*26 0.32 TCGA-CZ-5470-01 12 62103959 62103959 A T FAM19A2 3'UTR 0.27 TCGA-CZ-5470-01 12 977348 977348 A G WNK1 Intron 0.29 TCGA-CZ-5470-01 14 51390764 51390764 G A PYGL Missense_Mutation p.P195S 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-CZ-5470-01 15 65157277 65157277 G A PLEKHO2 Silent p.R221R 0.32 TCGA-CZ-5470-01 15 72847625 72847625 T G ARIH1 Missense_Mutation p.L201R 0.13 deleterious(0) probably_damaging(0.992) TCGA-CZ-5470-01 16 49314850 49314850 T C CBLN1 Missense_Mutation p.N123S 0.05 deleterious(0.02) possibly_damaging(0.507) TCGA-CZ-5470-01 17 4805700 4805700 G T C17orf107 3'UTR 0.10 TCGA-CZ-5470-01 17 7989539 7989539 C A ALOX12B Splice_Site p.X50_splice 0.08 TCGA-CZ-5470-01 18 21180999 21180999 A G ANKRD29 3'UTR 0.09 TCGA-CZ-5470-01 18 64202297 64202297 G A CDH19 Missense_Mutation p.T421I 0.07 deleterious(0.05) probably_damaging(1) TCGA-CZ-5470-01 19 3964350 3964350 C T DAPK3 Missense_Mutation p.D149N 0.25 tolerated(0.06) benign(0.083) TCGA-CZ-5470-01 19 41349813 41349813 T A CYP2A6 Missense_Mutation p.Q458L 0.08 probably_damaging(1) TCGA-CZ-5470-01 19 50921192 50921192 T C POLD1 Silent p.P1104P 0.13 TCGA-CZ-5470-01 1 149908474 149908474 C T MTMR11 Splice_Site p.X22_splice 0.35 TCGA-CZ-5470-01 1 155006218 155006218 C A DCST2 5'UTR 0.23 TCGA-CZ-5470-01 1 156641308 156641308 G A NES Missense_Mutation p.S891L 0.08 tolerated(0.06) benign(0.028) TCGA-CZ-5470-01 1 161011524 161011524 C - USF1 Frame_Shift_Del p.G130Vfs*33 0.40 TCGA-CZ-5470-01 1 196254849 196254849 G A KCNT2 Nonsense_Mutation p.R879* 0.32 TCGA-CZ-5470-01 1 200555334 200555334 G C KIF14 Missense_Mutation p.R1046G 0.26 deleterious(0) possibly_damaging(0.895) TCGA-CZ-5470-01 1 243303430 243303430 C A CEP170 Intron 0.28 TCGA-CZ-5470-01 1 35790967 35790967 C T ZMYM4 Nonsense_Mutation p.Q16* 0.08 TCGA-CZ-5470-01 1 57481090 57481090 C T DAB1 Missense_Mutation p.G304S 0.33 deleterious(0.04) probably_damaging(0.997) TCGA-CZ-5470-01 1 59248705 59248705 G T JUN Missense_Mutation p.A13D 0.33 tolerated(0.28) possibly_damaging(0.795) TCGA-CZ-5470-01 1 86047624 86047624 C T CYR61 Silent p.G97G 0.09 TCGA-CZ-5470-01 20 23350858 23350858 T G GZF1 Missense_Mutation p.L639R 0.38 deleterious(0.01) probably_damaging(0.927) TCGA-CZ-5470-01 20 32436409 32436409 G - CHMP4B Frame_Shift_Del p.G110Afs*7 0.23 TCGA-CZ-5470-01 21 47974087 47974087 C A DIP2A Silent p.T1012T 0.07 TCGA-CZ-5470-01 22 24313673 24313673 C T DDT 3'UTR 0.33 TCGA-CZ-5470-01 22 40062013 40062013 T A CACNA1I Splice_Site p.X1368_splice 0.19 TCGA-CZ-5470-01 2 216295472 216295472 T A FN1 Silent p.G217G 0.06 TCGA-CZ-5470-01 2 241686667 241686667 G A KIF1A Nonsense_Mutation p.Q1017* 0.21 TCGA-CZ-5470-01 2 242066393 242066393 G T PASK Missense_Mutation p.P646Q 0.10 deleterious(0.05) possibly_damaging(0.675) TCGA-CZ-5470-01 2 7164573 7164573 G C RNF144A Missense_Mutation p.D195H 0.22 deleterious(0) probably_damaging(0.997) TCGA-CZ-5470-01 3 101573504 101573504 G T NFKBIZ Missense_Mutation p.D474Y 0.25 deleterious(0) possibly_damaging(0.839) TCGA-CZ-5470-01 3 10188200 10188200 C A VHL Missense_Mutation p.H115N 0.37 deleterious(0) probably_damaging(0.993) TCGA-CZ-5470-01 3 105266275 105266275 G A ALCAM Missense_Mutation p.G428R 0.28 deleterious(0) probably_damaging(0.986) TCGA-CZ-5470-01 3 167167189 167167189 A G SERPINI2 Silent p.D322D 0.04 TCGA-CZ-5470-01 3 367660 367660 T A CHL1 Missense_Mutation p.I37N 0.35 deleterious(0) possibly_damaging(0.813) TCGA-CZ-5470-01 3 47163209 47163209 T A SETD2 Nonsense_Mutation p.R973* 0.31 TCGA-CZ-5470-01 3 52380742 52380742 C T DNAH1 Silent p.T637T 0.08 TCGA-CZ-5470-01 3 52443623 52443647 ACCTGCGATGAGGAAAGGAAAGCAG - BAP1 Splice_Site p.X23_splice 0.45 TCGA-CZ-5470-01 3 52610659 52610659 T - PBRM1 Frame_Shift_Del p.I1172Ffs*21 0.31 TCGA-CZ-5470-01 3 93598122 93598122 A - PROS1 Frame_Shift_Del p.V510Gfs*3 0.27 TCGA-CZ-5470-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.12 TCGA-CZ-5470-01 4 6864413 6864413 G A KIAA0232 Silent p.Q768Q 0.07 TCGA-CZ-5470-01 5 114860153 114860153 T C FEM1C Missense_Mutation p.D569G 0.22 tolerated(0.2) benign(0.15) TCGA-CZ-5470-01 5 139905891 139905891 C T ANKHD1 Silent p.C1601C 0.24 TCGA-CZ-5470-01 5 169694070 169694070 G A LCP2 Missense_Mutation p.P211S 0.21 tolerated(0.34) benign(0.015) TCGA-CZ-5470-01 6 12125187 12125187 C A HIVEP1 Nonsense_Mutation p.S1720* 0.27 TCGA-CZ-5470-01 6 37447813 37447813 C G CMTR1 Missense_Mutation p.F800L 0.16 tolerated(0.53) benign(0.002) TCGA-CZ-5470-01 6 43417738 43417738 C A ABCC10 Missense_Mutation p.P1463Q 0.13 deleterious(0) probably_damaging(1) TCGA-CZ-5470-01 7 142749937 142749937 G A OR6V1 Missense_Mutation p.C167Y 0.26 deleterious(0) probably_damaging(0.995) TCGA-CZ-5470-01 7 143020428 143020428 C A CLCN1 Silent p.I241I 0.12 TCGA-CZ-5470-01 7 72849270 72849270 G A FZD9 Silent p.T311T 0.20 TCGA-CZ-5470-01 7 98507681 98507681 T C TRRAP Silent p.V451V 0.15 TCGA-CZ-5470-01 7 99169358 99169358 C A ZNF655 Missense_Mutation p.L62I 0.30 tolerated(0.24) unknown(0) TCGA-CZ-5470-01 8 105503470 105503470 C T LRP12 Missense_Mutation p.V671I 0.46 tolerated(0.24) benign(0.002) TCGA-CZ-5470-01 8 139768035 139768035 C T COL22A1 Missense_Mutation p.G647D 0.06 unknown(0) TCGA-CZ-5470-01 8 16035394 16035394 C T MSR1 Splice_Site p.X35_splice 0.20 TCGA-CZ-5470-01 8 21766853 21766853 T C DOK2 Missense_Mutation p.D403G 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-CZ-5470-01 8 63973792 63973792 A C TTPA 3'UTR 0.21 TCGA-CZ-5470-01 8 94748137 94748137 C G RBM12B Missense_Mutation p.E168Q 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-CZ-5470-01 9 130169437 130169437 G A SLC2A8 Missense_Mutation p.C448Y 0.27 deleterious(0) probably_damaging(0.99) TCGA-CZ-5470-01 9 91262512 91262512 G C RP13-60M5.2 RNA 0.26 TCGA-CZ-5470-01 X 114953432 114953432 G T RP1-241P17.4 Missense_Mutation p.L40I 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-CZ-5470-01 X 140993373 140993373 G A MAGEC1 Silent p.E61E 0.34 TCGA-CZ-5470-01 X 23801393 23801393 G A SAT1 5'UTR 0.10 TCGA-CZ-5470-01 X 48923285 48923285 C T CCDC120 Missense_Mutation p.R289C 0.40 deleterious(0) probably_damaging(0.999) TCGA-CZ-5470-01 X 70607246 70607246 C T TAF1 Missense_Mutation p.P808S 0.32 deleterious(0.01) benign(0.094) TCGA-CZ-5982-01 10 107015522 107015522 G T SORCS3 Silent p.G1100G 0.30 TCGA-CZ-5982-01 10 53921672 53921672 G A PRKG1 Missense_Mutation p.G342E 0.29 tolerated(0.23) benign(0.021) TCGA-CZ-5982-01 10 69672600 69672600 A - SIRT1 Frame_Shift_Del p.E577Kfs*24 0.18 TCGA-CZ-5982-01 11 123676529 123676529 C T OR6M1 Missense_Mutation p.D177N 0.06 deleterious(0) probably_damaging(0.999) TCGA-CZ-5982-01 11 47602127 47602127 G T NDUFS3 Nonsense_Mutation p.G62* 0.20 TCGA-CZ-5982-01 11 62339115 62339115 G A EEF1G Missense_Mutation p.A92V 0.21 tolerated(0.2) benign(0.062) TCGA-CZ-5982-01 11 63517659 63517659 C A RTN3 Silent p.G909G 0.08 TCGA-CZ-5982-01 12 8906537 8906537 A G RIMKLB Missense_Mutation p.H182R 0.35 tolerated(0.26) probably_damaging(0.978) TCGA-CZ-5982-01 13 115057081 115057082 - TA UPF3A Intron 0.21 TCGA-CZ-5982-01 13 32945126 32945126 T A BRCA2 Missense_Mutation p.F2841I 0.39 deleterious(0) possibly_damaging(0.803) TCGA-CZ-5982-01 13 99361816 99361824 CGTCACCTA - SLC15A1 Splice_Site p.X356_splice 0.38 TCGA-CZ-5982-01 14 77492045 77492045 C G IRF2BPL Silent p.V697V 0.24 TCGA-CZ-5982-01 15 90276249 90276249 G T WDR93 Missense_Mutation p.G448V 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-CZ-5982-01 16 31373943 31373943 G A ITGAX Missense_Mutation p.E410K 0.33 tolerated(0.1) benign(0.021) TCGA-CZ-5982-01 16 54967655 54967655 G T IRX5 Missense_Mutation p.G441V 0.30 deleterious(0) unknown(0) TCGA-CZ-5982-01 17 78328249 78328249 T C RNF213 Silent p.L3579L 0.29 TCGA-CZ-5982-01 18 12324969 12324969 A C TUBB6 Intron 0.20 TCGA-CZ-5982-01 18 61627535 61627535 C T HMSD Silent p.F122F 0.18 TCGA-CZ-5982-01 18 76752286 76752286 C A SALL3 Missense_Mutation p.P99T 0.38 tolerated(0.09) unknown(0) TCGA-CZ-5982-01 19 2199918 2199918 G A DOT1L Silent p.R229R 0.06 TCGA-CZ-5982-01 19 35232767 35232767 G A ZNF181 Missense_Mutation p.C494Y 0.36 deleterious(0) probably_damaging(0.992) TCGA-CZ-5982-01 19 40330954 40330954 A T FBL Nonsense_Mutation p.C99* 0.43 TCGA-CZ-5982-01 19 50979507 50979507 G A FAM71E1 Missense_Mutation p.R47C 0.22 deleterious_low_confidence(0.02) benign(0.002) TCGA-CZ-5982-01 1 11147603 11147603 T - EXOSC10 Frame_Shift_Del p.I331Ffs*42 0.21 TCGA-CZ-5982-01 1 145684607 145684607 C G RNF115 Missense_Mutation p.T199R 0.21 deleterious(0) possibly_damaging(0.873) TCGA-CZ-5982-01 1 162824983 162824983 C T C1orf110 Missense_Mutation p.D161N 0.20 tolerated(0.09) benign(0.104) TCGA-CZ-5982-01 1 183515189 183515189 A T SMG7 Missense_Mutation p.Y774F 0.28 tolerated_low_confidence(0.87) benign(0.001) TCGA-CZ-5982-01 1 22178652 22178652 C T HSPG2 Missense_Mutation p.V2267M 0.36 benign(0.097) TCGA-CZ-5982-01 20 34457385 34457385 G T PHF20 Missense_Mutation p.L278F 0.31 deleterious(0.02) possibly_damaging(0.718) TCGA-CZ-5982-01 20 50407915 50407915 C A SALL4 Silent p.V369V 0.32 TCGA-CZ-5982-01 21 34922737 34922737 T A SON Silent p.T400T 0.34 TCGA-CZ-5982-01 21 47841988 47841988 C T PCNT Missense_Mutation p.P2377S 0.04 possibly_damaging(0.857) TCGA-CZ-5982-01 22 44322959 44322959 C A PNPLA3 Missense_Mutation p.S111Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-CZ-5982-01 22 45931087 45931087 C T FBLN1 Silent p.D264D 0.26 TCGA-CZ-5982-01 2 234627516 234627516 T C UGT1A4 Missense_Mutation p.L17P 0.36 deleterious(0.02) possibly_damaging(0.877) TCGA-CZ-5982-01 3 10191499 10191499 G - VHL Frame_Shift_Del p.V165Lfs*5 0.26 TCGA-CZ-5982-01 3 133342007 133342007 C T TOPBP1 Missense_Mutation p.V1036I 0.39 tolerated(0.51) benign(0.002) TCGA-CZ-5982-01 3 196842954 196842954 C G DLG1 Missense_Mutation p.R462S 0.31 tolerated(0.08) benign(0.121) TCGA-CZ-5982-01 3 52598158 52598158 G T PBRM1 Nonsense_Mutation p.Y1236* 0.47 TCGA-CZ-5982-01 3 57283562 57283562 T A APPL1 Silent p.S346S 0.45 TCGA-CZ-5982-01 4 175412964 175412964 A T HPGD 3'UTR 0.39 TCGA-CZ-5982-01 5 150090663 150090663 G A DCTN4 3'UTR 0.26 TCGA-CZ-5982-01 5 94918640 94918640 C A ARSK Missense_Mutation p.T146K 0.32 deleterious(0.02) possibly_damaging(0.85) TCGA-CZ-5982-01 6 153043393 153043393 G A MYCT1 3'UTR 0.48 TCGA-CZ-5982-01 6 42604791 42604791 C T UBR2 Silent p.L573L 0.27 TCGA-CZ-5982-01 7 102665597 102665597 A - FBXL13 Frame_Shift_Del p.P137Lfs*11 0.22 TCGA-CZ-5982-01 7 107706245 107706245 C G LAMB4 Missense_Mutation p.S933T 0.03 tolerated(0.36) benign(0.054) TCGA-CZ-5982-01 7 24720095 24720095 C T MPP6 Missense_Mutation p.H468Y 0.30 tolerated(0.88) benign(0.015) TCGA-CZ-5982-01 7 39991366 39991366 T C CDK13 Missense_Mutation p.Y376H 0.34 tolerated(0.1) unknown(0) TCGA-CZ-5982-01 8 120651072 120651072 A G ENPP2 5'Flank 0.42 TCGA-CZ-5982-01 8 25899690 25899690 A G EBF2 Missense_Mutation p.V70A 0.34 deleterious(0) probably_damaging(0.976) TCGA-CZ-5982-01 8 28206286 28206286 A G ZNF395 Missense_Mutation p.W498R 0.25 deleterious(0) probably_damaging(1) TCGA-CZ-5982-01 8 28906483 28906483 T A HMBOX1 Missense_Mutation p.L348Q 0.31 tolerated(0.11) probably_damaging(0.999) TCGA-CZ-5982-01 8 37696506 37696506 C T GPR124 Silent p.G764G 0.35 TCGA-CZ-5982-01 8 48353095 48353095 T A SPIDR Missense_Mutation p.F363Y 0.30 tolerated(1) benign(0.002) TCGA-CZ-5982-01 8 92082471 92082471 T C OTUD6B 5'UTR 0.55 TCGA-CZ-5982-01 9 104238212 104238212 A C TMEM246 Missense_Mutation p.I388S 0.21 deleterious(0) benign(0.26) TCGA-CZ-5982-01 9 130566570 130566570 G A FPGS Missense_Mutation p.V49M 0.05 deleterious(0) probably_damaging(0.93) TCGA-CZ-5982-01 9 32632433 32632433 G A TAF1L Missense_Mutation p.R1049C 0.04 deleterious(0) probably_damaging(1) TCGA-CZ-5982-01 X 40506319 40506319 A T CXorf38 Missense_Mutation p.D97E 0.41 tolerated(0.74) benign(0.138) TCGA-CZ-5982-01 X 74517350 74517350 T A UPRT Missense_Mutation p.F175Y 0.31 tolerated(0.08) probably_damaging(0.988) TCGA-CZ-5984-01 10 118220558 118220558 G T PNLIPRP3 Missense_Mutation p.V216F 0.43 deleterious(0) probably_damaging(0.996) TCGA-CZ-5984-01 10 43654206 43654207 - T CSGALNACT2 Frame_Shift_Ins p.K238* 0.14 TCGA-CZ-5984-01 10 88259942 88259942 C A WAPAL Missense_Mutation p.G353V 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CZ-5984-01 11 67433825 67433825 T C ALDH3B2 Missense_Mutation p.K67E 0.43 tolerated(0.15) possibly_damaging(0.648) TCGA-CZ-5984-01 12 50197831 50197831 G A NCKAP5L 5'UTR 0.30 TCGA-CZ-5984-01 12 54577492 54577492 T C SMUG1 Missense_Mutation p.E78G 0.44 tolerated(0.07) benign(0.434) TCGA-CZ-5984-01 14 74420179 74420179 G T COQ6 Nonsense_Mutation p.E69* 0.32 TCGA-CZ-5984-01 14 74531621 74531621 C A ALDH6A1 Silent p.V469V 0.17 TCGA-CZ-5984-01 14 74973938 74973938 C - LTBP2 Frame_Shift_Del p.R1284Pfs*21 0.09 TCGA-CZ-5984-01 14 91123577 91123577 G A TTC7B Missense_Mutation p.P428S 0.26 deleterious(0) probably_damaging(1) TCGA-CZ-5984-01 15 83791521 83791521 C G TM6SF1 Missense_Mutation p.T165R 0.17 tolerated(0.07) benign(0.011) TCGA-CZ-5984-01 16 24046821 24046821 G A PRKCB Missense_Mutation p.R161H 0.36 deleterious(0) probably_damaging(0.992) TCGA-CZ-5984-01 16 55860205 55860205 C T CES1 Missense_Mutation p.C88Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-CZ-5984-01 17 27041908 27041908 G A RAB34 Silent p.V262V 0.39 TCGA-CZ-5984-01 17 48703992 48703992 C A CACNA1G Missense_Mutation p.S2338R 0.41 deleterious_low_confidence(0.03) benign(0.37) TCGA-CZ-5984-01 17 56649279 56649280 - A TEX14 Intron 0.19 TCGA-CZ-5984-01 17 79826812 79826814 GTC - ARHGDIA In_Frame_Del p.D185del 0.26 TCGA-CZ-5984-01 18 44268797 44268797 C T ST8SIA5 Missense_Mutation p.E133K 0.48 benign(0.247) TCGA-CZ-5984-01 18 76753965 76753965 G A SALL3 Silent p.T658T 0.25 TCGA-CZ-5984-01 19 10090547 10090547 G A COL5A3 Nonsense_Mutation p.R894* 0.28 TCGA-CZ-5984-01 19 49983839 49983839 C G FLT3LG Missense_Mutation p.L231V 0.12 deleterious_low_confidence(0.01) benign(0.364) TCGA-CZ-5984-01 1 100336394 100336394 G A AGL Silent p.A309A 0.26 TCGA-CZ-5984-01 1 1919956 1919956 C G C1orf222 Missense_Mutation p.K88N 0.39 deleterious(0) possibly_damaging(0.895) TCGA-CZ-5984-01 1 196883638 196883638 G T CFHR4 Missense_Mutation p.M397I 0.32 tolerated(0.59) benign(0) TCGA-CZ-5984-01 1 22913109 22913109 G A EPHA8 Silent p.P320P 0.08 TCGA-CZ-5984-01 20 44586316 44586316 G T ZNF335 Missense_Mutation p.A784D 0.33 tolerated(0.12) benign(0.347) TCGA-CZ-5984-01 21 46117944 46117944 G C KRTAP10-12 3'UTR 0.31 TCGA-CZ-5984-01 21 46363676 46363676 G A FAM207A Silent p.L69L 0.36 TCGA-CZ-5984-01 21 46951439 46951439 G A SLC19A1 Silent p.S271S 0.43 TCGA-CZ-5984-01 22 38877247 38877247 T C KDELR3 Missense_Mutation p.S128P 0.34 deleterious(0.02) benign(0.093) TCGA-CZ-5984-01 22 41832766 41832766 C - TOB2 Frame_Shift_Del p.G195Afs*9 0.26 TCGA-CZ-5984-01 2 191792206 191792206 C T GLS Missense_Mutation p.H475Y 0.33 deleterious(0.01) possibly_damaging(0.86) TCGA-CZ-5984-01 2 44436369 44436369 T C PPM1B Silent p.S289S 0.55 TCGA-CZ-5984-01 3 10191622 10191623 - A VHL Frame_Shift_Ins p.I206Nfs*50 0.41 TCGA-CZ-5984-01 3 149679001 149679001 T - RNF13 3'UTR 0.29 TCGA-CZ-5984-01 4 106848542 106848542 G T NPNT Missense_Mutation p.K74N 0.46 deleterious(0) possibly_damaging(0.766) TCGA-CZ-5984-01 4 120548404 120548404 G C PDE5A Intron 0.17 TCGA-CZ-5984-01 4 17609234 17609234 T G LAP3 3'UTR 0.24 TCGA-CZ-5984-01 5 129015567 129015567 G A ADAMTS19 Missense_Mutation p.E867K 0.21 deleterious(0) probably_damaging(1) TCGA-CZ-5984-01 5 137522079 137522079 C T KIF20A Missense_Mutation p.R772C 0.25 deleterious(0) probably_damaging(1) TCGA-CZ-5984-01 5 140201426 140201426 C T PCDHA5 Silent p.Y22Y 0.27 TCGA-CZ-5984-01 5 140625765 140625765 G A PCDHB15 Missense_Mutation p.E207K 0.26 deleterious_low_confidence(0.01) benign(0.25) TCGA-CZ-5984-01 5 176825447 176825447 T C SLC34A1 3'UTR 0.30 TCGA-CZ-5984-01 6 146273498 146273498 A T SHPRH Missense_Mutation p.N250K 0.17 deleterious(0.03) benign(0.06) TCGA-CZ-5984-01 6 43146557 43146557 G A SRF Silent p.Q456Q 0.21 TCGA-CZ-5984-01 6 75861721 75861721 G T COL12A1 Missense_Mutation p.Q1288K 0.24 benign(0.155) TCGA-CZ-5984-01 6 83904158 83904158 A G RWDD2A 5'UTR 0.26 TCGA-CZ-5984-01 7 102106463 102106463 G T LRWD1 Nonsense_Mutation p.E94* 0.28 TCGA-CZ-5984-01 7 147869391 147869391 G A CNTNAP2 Missense_Mutation p.G944E 0.05 deleterious(0) probably_damaging(0.99) TCGA-CZ-5984-01 7 34085973 34085973 A G BMPER Missense_Mutation p.H211R 0.10 tolerated(0.06) possibly_damaging(0.582) TCGA-CZ-5984-01 8 106811085 106811085 C A ZFPM2 Silent p.A291A 0.19 TCGA-CZ-5984-01 9 34997035 34997035 T C DNAJB5 Missense_Mutation p.C390R 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-CZ-5984-01 9 79118095 79118095 G T GCNT1 Silent p.L266L 0.30 TCGA-CZ-5984-01 9 86258688 86258688 T C IDNK Missense_Mutation p.M186T 0.30 tolerated(0.08) benign(0.002) TCGA-CZ-5984-01 X 118715555 118715560 AAATGG - UBE2A Splice_Site p.X79_splice 0.51 TCGA-CZ-5985-01 10 6147033 6147033 G A RBM17 Missense_Mutation p.R127K 0.27 tolerated(0.19) probably_damaging(0.952) TCGA-CZ-5985-01 10 73537549 73537549 G T C10orf54 5'Flank 0.27 TCGA-CZ-5985-01 10 73574721 73574721 G A CDH23 Missense_Mutation p.E1011K 0.29 deleterious_low_confidence(0.01) benign(0.021) TCGA-CZ-5985-01 10 98064450 98064450 G T DNTT Nonsense_Mutation p.E66* 0.25 TCGA-CZ-5985-01 11 102479831 102479831 T C MMP20 Splice_Site p.X217_splice 0.06 TCGA-CZ-5985-01 11 117309653 117309653 C A DSCAML1 Silent p.S1457S 0.44 TCGA-CZ-5985-01 11 33375165 33375165 A G HIPK3 3'UTR 0.26 TCGA-CZ-5985-01 11 55653110 55653110 G A TRIM51 Missense_Mutation p.C69Y 0.33 tolerated(1) benign(0.025) TCGA-CZ-5985-01 12 15261892 15261892 A C RERG 3'UTR 0.45 TCGA-CZ-5985-01 12 7967055 7967055 C T SLC2A14 Missense_Mutation p.V474I 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-CZ-5985-01 12 8074152 8074152 C T SLC2A3 Missense_Mutation p.V450I 0.09 deleterious(0.01) probably_damaging(1) TCGA-CZ-5985-01 13 48612044 48612044 A C NUDT15 Intron 0.14 TCGA-CZ-5985-01 13 86368849 86368849 G A SLITRK6 Nonsense_Mutation p.R599* 0.26 TCGA-CZ-5985-01 14 22616423 22616423 A G TRAV27 Missense_Mutation p.Q55R 0.54 deleterious(0.01) possibly_damaging(0.589) TCGA-CZ-5985-01 15 23931882 23931882 G A NDN Silent p.H161H 0.31 TCGA-CZ-5985-01 16 10524570 10524570 G C ATF7IP2 Missense_Mutation p.K31N 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-CZ-5985-01 16 20435331 20435332 - A ACSM5 Frame_Shift_Ins p.N288Kfs*9 0.23 TCGA-CZ-5985-01 16 27504025 27504025 A C GTF3C1 Missense_Mutation p.I962M 0.26 deleterious(0) possibly_damaging(0.885) TCGA-CZ-5985-01 16 70012167 70012167 C G RP11-419C5.2 RNA 0.20 TCGA-CZ-5985-01 16 89595969 89595969 A T SPG7 Missense_Mutation p.E281D 0.31 tolerated(0.44) benign(0.008) TCGA-CZ-5985-01 17 8054097 8054097 T C PER1 5'UTR 0.30 TCGA-CZ-5985-01 19 14000172 14000172 C T C19orf57 Silent p.Q499Q 0.29 TCGA-CZ-5985-01 19 19453474 19453474 G T MAU2 Missense_Mutation p.C289F 0.38 tolerated(0.28) benign(0.395) TCGA-CZ-5985-01 19 46088086 46088086 T C OPA3 5'UTR 0.38 TCGA-CZ-5985-01 19 47424672 47424676 GAAAT AAAA ARHGAP35 Frame_Shift_Del p.E914Kfs*34 0.22 TCGA-CZ-5985-01 19 47969450 47969450 G T SLC8A2 Silent p.R71R 0.33 TCGA-CZ-5985-01 19 49658118 49658118 T C HRC Missense_Mutation p.E126G 0.30 tolerated(0.19) possibly_damaging(0.624) TCGA-CZ-5985-01 19 52497620 52497620 A G ZNF615 Missense_Mutation p.C248R 0.35 deleterious(0) probably_damaging(0.994) TCGA-CZ-5985-01 1 110086219 110086219 C T GPR61 Missense_Mutation p.P192L 0.36 tolerated(0.23) benign(0.145) TCGA-CZ-5985-01 1 110768698 110768698 G A KCNC4 Missense_Mutation p.A573T 0.25 tolerated(0.06) benign(0.005) TCGA-CZ-5985-01 1 149901022 149901022 T A MTMR11 Nonstop_Mutation p.*710Lext*26 0.28 TCGA-CZ-5985-01 1 156914213 156914214 TA - ARHGEF11 Frame_Shift_Del p.T1002Nfs*7 0.30 TCGA-CZ-5985-01 1 159921403 159921403 G A SLAMF9 3'UTR 0.32 TCGA-CZ-5985-01 1 17727910 17727910 C T PADI6 RNA 0.29 TCGA-CZ-5985-01 1 186099138 186099138 T G HMCN1 Missense_Mutation p.I4315M 0.29 probably_damaging(0.996) TCGA-CZ-5985-01 1 22895795 22895795 C A EPHA8 Missense_Mutation p.D36E 0.29 deleterious(0) probably_damaging(0.998) TCGA-CZ-5985-01 1 22895796 22895796 A C EPHA8 Missense_Mutation p.T37P 0.29 deleterious(0) probably_damaging(0.999) TCGA-CZ-5985-01 1 245583033 245583033 C T KIF26B Silent p.A384A 0.30 TCGA-CZ-5985-01 1 247081660 247081660 T G AHCTF1 Silent p.R14R 0.38 TCGA-CZ-5985-01 1 44365370 44365370 T C ST3GAL3 Silent p.L308L 0.35 TCGA-CZ-5985-01 1 53535790 53535790 G T PODN Missense_Mutation p.R136L 0.25 tolerated(0.09) benign(0.39) TCGA-CZ-5985-01 20 47266686 47266686 G A PREX1 Missense_Mutation p.P959L 0.31 tolerated(0.46) benign(0.007) TCGA-CZ-5985-01 21 19716370 19716370 G T TMPRSS15 Nonsense_Mutation p.Y393* 0.22 TCGA-CZ-5985-01 22 32198825 32198825 G C DEPDC5 Splice_Site p.X361_splice 0.32 TCGA-CZ-5985-01 2 113308515 113308515 C A POLR1B Missense_Mutation p.T233N 0.19 tolerated(1) benign(0.158) TCGA-CZ-5985-01 3 10183858 10183859 - CA VHL Frame_Shift_Ins p.S111Tfs*49 0.43 TCGA-CZ-5985-01 3 123411691 123411694 GAGT AAG MYLK Frame_Shift_Del p.L1152Ffs*20 0.28 TCGA-CZ-5985-01 3 40433669 40433669 G T ENTPD3 Intron 0.47 TCGA-CZ-5985-01 3 52439311 52439311 C A BAP1 Splice_Site p.X311_splice 0.39 TCGA-CZ-5985-01 3 69073260 69073260 A C TMF1 Missense_Mutation p.N1028K 0.44 tolerated(0.06) possibly_damaging(0.864) TCGA-CZ-5985-01 4 101331487 101331487 G T EMCN Silent p.T259T 0.31 TCGA-CZ-5985-01 4 104016427 104016427 T A BDH2 Missense_Mutation p.R28S 0.30 tolerated(0.15) benign(0.001) TCGA-CZ-5985-01 4 166929189 166929189 C T TLL1 Silent p.N302N 0.18 TCGA-CZ-5985-01 4 183959968 183959968 T G FAM92A1P2 RNA 0.28 TCGA-CZ-5985-01 4 42581897 42581897 G T ATP8A1 Silent p.V311V 0.37 TCGA-CZ-5985-01 5 112349325 112349325 G T DCP2 3'UTR 0.21 TCGA-CZ-5985-01 5 137903401 137903401 C T HSPA9 Silent p.L182L 0.33 TCGA-CZ-5985-01 5 140237390 140237390 C T PCDHA10 Missense_Mutation p.A586V 0.06 tolerated_low_confidence(0.11) benign(0.021) TCGA-CZ-5985-01 5 37044460 37044460 T A NIPBL Missense_Mutation p.D2040E 0.19 tolerated(0.21) probably_damaging(0.957) TCGA-CZ-5985-01 5 76342255 76342255 G T AGGF1 Missense_Mutation p.K318N 0.28 deleterious(0.01) probably_damaging(0.941) TCGA-CZ-5985-01 6 14118278 14118278 C A CD83 Nonsense_Mutation p.Y45* 0.11 TCGA-CZ-5985-01 7 104752397 104752397 G T KMT2E Missense_Mutation p.E1398D 0.27 tolerated_low_confidence(0.34) benign(0.217) TCGA-CZ-5985-01 7 148875840 148875840 T - ZNF398 Frame_Shift_Del p.S294Qfs*13 0.29 TCGA-CZ-5985-01 7 4169711 4169711 G C SDK1 Missense_Mutation p.E1371Q 0.32 deleterious(0.05) benign(0.171) TCGA-CZ-5985-01 7 82785211 82785211 G T PCLO Nonsense_Mutation p.S249* 0.33 TCGA-CZ-5985-01 9 128099711 128099711 A T GAPVD1 Silent p.V933V 0.33 TCGA-CZ-5985-01 9 26999658 26999658 G A LRRC19 Missense_Mutation p.P12L 0.46 tolerated(0.62) benign(0.001) TCGA-CZ-5985-01 9 34402709 34402709 C T FAM219A Missense_Mutation p.R86Q 0.38 tolerated(0.09) probably_damaging(0.999) TCGA-CZ-5985-01 X 135829736 135829736 C T ARHGEF6 Missense_Mutation p.D89N 0.60 tolerated_low_confidence(0.18) benign(0.19) TCGA-CZ-5985-01 X 53615356 53615356 T A HUWE1 Missense_Mutation p.T1534S 0.67 benign(0.132) TCGA-CZ-5986-01 10 102089625 102089625 C T PKD2L1 Splice_Site p.X79_splice 0.32 TCGA-CZ-5986-01 11 10785039 10785039 T A CTR9 Missense_Mutation p.M304K 0.20 deleterious(0) benign(0.021) TCGA-CZ-5986-01 11 108127063 108127063 C - ATM Frame_Shift_Del p.K750Sfs*3 0.28 TCGA-CZ-5986-01 11 123886863 123886863 C A OR10G4 Missense_Mutation p.N194K 0.26 tolerated(0.07) possibly_damaging(0.524) TCGA-CZ-5986-01 11 123909127 123909127 G T OR10G7 Missense_Mutation p.N194K 0.05 tolerated(0.07) possibly_damaging(0.524) TCGA-CZ-5986-01 11 134079245 134079245 A T NCAPD3 Missense_Mutation p.L232M 0.27 deleterious(0.05) probably_damaging(0.986) TCGA-CZ-5986-01 11 34478280 34478280 T C CAT Silent p.N324N 0.33 TCGA-CZ-5986-01 11 45245952 45245952 G A PRDM11 Silent p.L309L 0.35 TCGA-CZ-5986-01 11 45245953 45245953 G A PRDM11 Missense_Mutation p.E310K 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.668) TCGA-CZ-5986-01 11 55418973 55418973 A T OR4S2 Silent p.T198T 0.05 TCGA-CZ-5986-01 11 5624941 5624943 GGA - TRIM6 In_Frame_Del p.E163del 0.27 TCGA-CZ-5986-01 12 107713793 107713793 C T BTBD11 Missense_Mutation p.S359L 0.23 deleterious(0.01) benign(0.101) TCGA-CZ-5986-01 12 133351815 133351815 T A GOLGA3 Missense_Mutation p.K1352I 0.37 deleterious(0) probably_damaging(0.985) TCGA-CZ-5986-01 12 15262351 15262351 A C RERG Missense_Mutation p.L98R 0.28 deleterious(0) possibly_damaging(0.847) TCGA-CZ-5986-01 12 23818447 23818447 G A SOX5 Missense_Mutation p.R288W 0.37 deleterious(0) probably_damaging(0.997) TCGA-CZ-5986-01 12 55688731 55688731 C T OR6C6 Missense_Mutation p.A96T 0.34 tolerated_low_confidence(0.19) benign(0.009) TCGA-CZ-5986-01 12 56647514 56647514 A T ANKRD52 Missense_Mutation p.I326N 0.38 deleterious(0) probably_damaging(0.997) TCGA-CZ-5986-01 13 113508719 113508719 G A ATP11A Silent p.R706R 0.38 TCGA-CZ-5986-01 13 86368002 86368002 G A SLITRK6 3'UTR 0.39 TCGA-CZ-5986-01 14 105461138 105461138 T A C14orf79 3'UTR 0.45 TCGA-CZ-5986-01 14 23444255 23444260 TTGCAA - AJUBA In_Frame_Del p.C432_N433del 0.27 TCGA-CZ-5986-01 15 44829349 44829350 - CT EIF3J 5'UTR 0.36 TCGA-CZ-5986-01 15 73029249 73029249 T G BBS4 Missense_Mutation p.N465K 0.29 deleterious_low_confidence(0) possibly_damaging(0.48) TCGA-CZ-5986-01 15 83349316 83349316 C T AP3B2 Silent p.V321V 0.50 TCGA-CZ-5986-01 15 91035819 91035819 G - IQGAP1 Frame_Shift_Del p.E1502Nfs*2 0.22 TCGA-CZ-5986-01 16 397045 397045 G A AXIN1 5'UTR 0.38 TCGA-CZ-5986-01 16 57255221 57255221 G C RSPRY1 Missense_Mutation p.C352S 0.37 deleterious(0.05) probably_damaging(0.994) TCGA-CZ-5986-01 16 57255223 57255223 A T RSPRY1 Missense_Mutation p.T353S 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-CZ-5986-01 16 71683884 71683884 A C PHLPP2 Missense_Mutation p.W961G 0.29 tolerated(0.51) probably_damaging(1) TCGA-CZ-5986-01 19 10246885 10246885 T C DNMT1 Missense_Mutation p.H1523R 0.08 deleterious(0) probably_damaging(0.997) TCGA-CZ-5986-01 19 14157046 14157046 C G IL27RA Silent p.T283T 0.28 TCGA-CZ-5986-01 19 18377009 18377009 C T KIAA1683 Silent p.G447G 0.32 TCGA-CZ-5986-01 19 42213711 42213711 C A CEA Silent p.P59P 0.31 TCGA-CZ-5986-01 19 46094945 46094945 G A GPR4 Silent p.S60S 0.32 TCGA-CZ-5986-01 19 56363605 56363605 A G NLRP4 Silent p.E53E 0.35 TCGA-CZ-5986-01 19 6990855 6990855 A C EMR4P RNA 0.31 TCGA-CZ-5986-01 19 884992 884992 G A MED16 Missense_Mutation p.S299F 0.28 deleterious(0) possibly_damaging(0.788) TCGA-CZ-5986-01 1 110251197 110251197 A C GSTM5 5'Flank 0.33 TCGA-CZ-5986-01 1 12408985 12408985 G A VPS13D Missense_Mutation p.E3059K 0.35 possibly_damaging(0.452) TCGA-CZ-5986-01 1 152759771 152759771 C A LCE1E 5'UTR 0.35 TCGA-CZ-5986-01 1 17609393 17609393 C G PADI3 Missense_Mutation p.P605R 0.21 deleterious(0.01) probably_damaging(1) TCGA-CZ-5986-01 1 186024755 186024766 GCTGTGAATGTA - HMCN1 In_Frame_Del p.V2366_A2369del 0.24 TCGA-CZ-5986-01 1 204971726 204971726 A T NFASC Missense_Mutation p.N1047Y 0.19 deleterious(0) unknown(0) TCGA-CZ-5986-01 1 236399492 236399492 G C ERO1LB Intron 0.28 TCGA-CZ-5986-01 1 26162026 26162026 C T AUNIP Missense_Mutation p.D178N 0.31 tolerated(0.34) possibly_damaging(0.908) TCGA-CZ-5986-01 1 34180251 34180251 G A CSMD2 Silent p.T1074T 0.36 TCGA-CZ-5986-01 1 43918042 43918042 T G SZT2 3'UTR 0.64 TCGA-CZ-5986-01 1 74507410 74507410 C T LRRIQ3 Missense_Mutation p.R402Q 0.23 tolerated(0.18) benign(0.325) TCGA-CZ-5986-01 20 33447323 33447323 C T GGT7 Missense_Mutation p.V313M 0.46 deleterious(0.01) possibly_damaging(0.629) TCGA-CZ-5986-01 20 34257346 34257346 G A NFS1 3'UTR 0.56 TCGA-CZ-5986-01 20 58441383 58441394 AATCTTTTTCAA - SYCP2 In_Frame_Del p.F1425_D1428del 0.23 TCGA-CZ-5986-01 2 17696802 17696802 C G RAD51AP2 Missense_Mutation p.D961H 0.39 deleterious(0.02) benign(0.15) TCGA-CZ-5986-01 2 179403617 179403617 A C TTN Intron 0.33 TCGA-CZ-5986-01 2 219609908 219609908 T A TTLL4 Missense_Mutation p.F580I 0.30 deleterious(0) probably_damaging(0.994) TCGA-CZ-5986-01 2 32526479 32526479 T C YIPF4 Missense_Mutation p.I171T 0.33 deleterious(0) possibly_damaging(0.864) TCGA-CZ-5986-01 3 10188319 10188344 AGGTACTGACGTTTTACTTTTTAAAA - VHL Splice_Site p.X155_splice 0.38 TCGA-CZ-5986-01 3 195453061 195453061 C A MUC20 Silent p.P529P 0.30 TCGA-CZ-5986-01 3 38307442 38307442 C A SLC22A13 Missense_Mutation p.L31M 0.36 deleterious(0.03) possibly_damaging(0.832) TCGA-CZ-5986-01 3 52692236 52692236 A - PBRM1 Frame_Shift_Del p.Q209Rfs*15 0.36 TCGA-CZ-5986-01 4 147438224 147438224 A G SLC10A7 Missense_Mutation p.I50T 0.25 deleterious(0) probably_damaging(0.996) TCGA-CZ-5986-01 4 1980470 1980470 C T WHSC1 Missense_Mutation p.T1311I 0.29 deleterious(0) benign(0.027) TCGA-CZ-5986-01 4 47694991 47694991 A G CORIN Silent p.H303H 0.07 TCGA-CZ-5986-01 4 89577067 89577067 A G HERC3 Missense_Mutation p.Y317C 0.34 deleterious(0) possibly_damaging(0.894) TCGA-CZ-5986-01 5 131606692 131606692 G C PDLIM4 Missense_Mutation p.G138R 0.23 tolerated(0.14) benign(0.013) TCGA-CZ-5986-01 5 140712348 140712348 G A PCDHGA1 Silent p.A699A 0.23 TCGA-CZ-5986-01 5 74097435 74097435 G A FAM169A Missense_Mutation p.A311V 0.16 tolerated(0.8) benign(0.023) TCGA-CZ-5986-01 5 74097436 74097436 C T FAM169A Missense_Mutation p.A311T 0.17 tolerated(0.53) benign(0.007) TCGA-CZ-5986-01 5 94030788 94030789 - A ANKRD32 Frame_Shift_Ins p.T984Nfs*5 0.14 TCGA-CZ-5986-01 7 102585103 102585103 G A LRRC17 3'UTR 0.26 TCGA-CZ-5986-01 7 117864901 117864901 G A ANKRD7 Missense_Mutation p.S6N 0.43 tolerated(0.35) benign(0.003) TCGA-CZ-5986-01 7 134891906 134891906 T A WDR91 Missense_Mutation p.Q187L 0.28 tolerated(0.83) benign(0) TCGA-CZ-5986-01 7 140373652 140373652 G A ADCK2 Silent p.V174V 0.33 TCGA-CZ-5986-01 7 151836874 151836876 CCC A KMT2C Frame_Shift_Del p.G4782Sfs*10 0.29 TCGA-CZ-5986-01 7 6048687 6048687 G C PMS2 5'UTR 0.35 TCGA-CZ-5986-01 8 91962067 91962067 G A NECAB1 Missense_Mutation p.R298H 0.43 tolerated(0.05) benign(0.029) TCGA-CZ-5986-01 9 111848284 111848284 T G TMEM245 Missense_Mutation p.N446T 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.72) TCGA-CZ-5986-01 9 131019384 131019384 C - GOLGA2 Frame_Shift_Del p.A991Lfs*7 0.19 TCGA-CZ-5986-01 9 35718904 35718904 G T TLN1 Missense_Mutation p.R634S 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-CZ-5986-01 9 5570132 5570132 G A PDCD1LG2 3'UTR 0.29 TCGA-CZ-5987-01 10 123353230 123353230 C T FGFR2 Silent p.E34E 0.24 TCGA-CZ-5987-01 10 14880465 14880465 G A HSPA14 Intron 0.21 TCGA-CZ-5987-01 10 5435755 5435755 T C TUBAL3 Missense_Mutation p.T356A 0.38 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CZ-5987-01 10 60128479 60128479 G T UBE2D1 Splice_Site p.X133_splice 0.41 TCGA-CZ-5987-01 11 64012122 64012132 TGGCACCAGGC - PPP1R14B 3'UTR 0.32 TCGA-CZ-5987-01 11 65793079 65793079 G T CATSPER1 Missense_Mutation p.R258S 0.56 tolerated(0.69) benign(0.019) TCGA-CZ-5987-01 12 101776977 101776980 GAAG - UTP20 Frame_Shift_Del p.E2607Rfs*2 0.17 TCGA-CZ-5987-01 12 109577276 109577276 C A ACACB Silent p.I22I 0.25 TCGA-CZ-5987-01 12 53693593 53693593 C T C12orf10 Silent p.R24R 0.33 TCGA-CZ-5987-01 12 7469736 7469736 C T ACSM4 Silent p.F208F 0.31 TCGA-CZ-5987-01 12 9322148 9322148 G A PZP Missense_Mutation p.P627S 0.50 tolerated(0.44) probably_damaging(0.994) TCGA-CZ-5987-01 13 37593524 37593524 A - SUPT20H Frame_Shift_Del p.F609Lfs*3 0.29 TCGA-CZ-5987-01 15 34129174 34129174 T C RYR3 Missense_Mutation p.L3879P 0.31 probably_damaging(0.999) TCGA-CZ-5987-01 15 34130917 34130917 G A RYR3 Missense_Mutation p.D4246N 0.31 possibly_damaging(0.881) TCGA-CZ-5987-01 16 54966436 54966436 C A IRX5 Silent p.G92G 0.23 TCGA-CZ-5987-01 17 26943335 26943335 G C KIAA0100 Intron 0.07 TCGA-CZ-5987-01 17 27959837 27959837 T C SSH2 Missense_Mutation p.Q765R 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.709) TCGA-CZ-5987-01 17 38340547 38340547 G C RAPGEFL1 Missense_Mutation p.L21F 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-CZ-5987-01 17 39579096 39579096 G A KRT37 Silent p.A222A 0.42 TCGA-CZ-5987-01 17 64731699 64731699 C T PRKCA Silent p.C383C 0.33 TCGA-CZ-5987-01 17 72350319 72350319 C A KIF19 Missense_Mutation p.T776N 0.27 tolerated(0.14) benign(0.042) TCGA-CZ-5987-01 17 7721647 7721647 C T DNAH2 Missense_Mutation p.R3469C 0.33 possibly_damaging(0.832) TCGA-CZ-5987-01 18 63477170 63477170 C T CDH7 Silent p.N147N 0.25 TCGA-CZ-5987-01 19 37865057 37865057 C T ZNF527 Intron 0.42 TCGA-CZ-5987-01 19 44777290 44777290 A G ZNF233 Missense_Mutation p.I159M 0.33 tolerated(0.52) benign(0.002) TCGA-CZ-5987-01 19 45666460 45666460 G A TRAPPC6A Missense_Mutation p.P171L 0.31 deleterious(0) benign(0.001) TCGA-CZ-5987-01 1 11217322 11217322 T A MTOR Missense_Mutation p.K1452N 0.30 deleterious(0) probably_damaging(0.991) TCGA-CZ-5987-01 1 150234002 150234002 C A CA14 Missense_Mutation p.T74N 0.09 tolerated(0.68) benign(0.007) TCGA-CZ-5987-01 1 159163732 159163732 T G CADM3 Missense_Mutation p.V232G 0.35 deleterious(0.01) probably_damaging(0.982) TCGA-CZ-5987-01 1 160100072 160100072 C T ATP1A2 Missense_Mutation p.R548C 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-CZ-5987-01 1 162368719 162368719 T G SH2D1B Silent p.T119T 0.32 TCGA-CZ-5987-01 1 168665781 168665781 G A DPT 3'UTR 0.06 TCGA-CZ-5987-01 1 179012867 179012867 T A FAM20B 5'UTR 0.43 TCGA-CZ-5987-01 1 179012868 179012868 C A FAM20B 5'UTR 0.43 TCGA-CZ-5987-01 1 180910371 180910371 C T KIAA1614 Missense_Mutation p.P1037S 0.41 tolerated(0.11) possibly_damaging(0.545) TCGA-CZ-5987-01 1 185143987 185143987 C T SWT1 Silent p.I236I 0.32 TCGA-CZ-5987-01 1 20302020 20302020 C T PLA2G2A 3'UTR 0.27 TCGA-CZ-5987-01 1 22079531 22079531 G T USP48 Missense_Mutation p.P165Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-CZ-5987-01 20 13695697 13695697 C T ESF1 Missense_Mutation p.A794T 0.29 tolerated(0.23) probably_damaging(0.996) TCGA-CZ-5987-01 20 35261962 35261962 C - SLA2 Frame_Shift_Del p.A88Pfs*12 0.25 TCGA-CZ-5987-01 20 44806600 44806600 C T CDH22 Missense_Mutation p.V634I 0.10 tolerated(1) benign(0.018) TCGA-CZ-5987-01 20 47569395 47569395 A T ARFGEF2 Missense_Mutation p.I193F 0.32 deleterious(0.01) benign(0.354) TCGA-CZ-5987-01 22 29914993 29914997 ACCTA - THOC5 Splice_Site p.X496_splice 0.26 TCGA-CZ-5987-01 2 101885790 101885790 G C CNOT11 Missense_Mutation p.R483T 0.38 deleterious(0) probably_damaging(0.987) TCGA-CZ-5987-01 2 160289320 160289320 T G BAZ2B Missense_Mutation p.E616D 0.34 benign(0.217) TCGA-CZ-5987-01 2 178326666 178326666 G C AGPS Missense_Mutation p.E306Q 0.36 deleterious(0) probably_damaging(0.952) TCGA-CZ-5987-01 2 79349111 79349111 C G REG1A Intron 0.04 TCGA-CZ-5987-01 3 10191570 10191570 T C VHL Missense_Mutation p.L188P 0.50 deleterious(0) probably_damaging(1) TCGA-CZ-5987-01 3 129275042 129275042 G A PLXND1 3'UTR 0.87 TCGA-CZ-5987-01 3 184633149 184633149 G A VPS8 Missense_Mutation p.E757K 0.22 tolerated(0.19) benign(0.039) TCGA-CZ-5987-01 3 33855050 33855050 G A PDCD6IP Splice_Site p.X89_splice 0.58 TCGA-CZ-5987-01 3 52713599 52713600 - G PBRM1 Frame_Shift_Ins p.V44Cfs*9 0.40 TCGA-CZ-5987-01 3 67578587 67578587 T C SUCLG2 Missense_Mutation p.Q129R 0.50 deleterious(0) probably_damaging(0.999) TCGA-CZ-5987-01 4 151169528 151169528 C A DCLK2 Silent p.P666P 0.30 TCGA-CZ-5987-01 5 38921794 38921794 A G OSMR Missense_Mutation p.I555V 0.30 tolerated(1) benign(0.002) TCGA-CZ-5987-01 6 31593611 31593611 C T PRRC2A Nonsense_Mutation p.Q268* 0.22 TCGA-CZ-5987-01 6 33240437 33240437 T C RPS18 Silent p.I12I 0.56 TCGA-CZ-5987-01 6 43400901 43400901 G C ABCC10 Missense_Mutation p.A395P 0.55 deleterious(0.01) probably_damaging(0.969) TCGA-CZ-5987-01 7 121719654 121719654 T G AASS Missense_Mutation p.E798A 0.31 tolerated(0.14) benign(0.217) TCGA-CZ-5987-01 7 86468364 86468364 C A GRM3 Missense_Mutation p.P512T 0.28 deleterious(0) probably_damaging(1) TCGA-CZ-5987-01 7 92844896 92844896 A G HEPACAM2 Missense_Mutation p.L178P 0.30 tolerated(0.07) possibly_damaging(0.857) TCGA-CZ-5987-01 8 70982083 70982083 G A PRDM14 Missense_Mutation p.R5W 0.23 deleterious(0.02) benign(0.252) TCGA-CZ-5987-01 8 86048083 86048083 A G LRRCC1 Missense_Mutation p.I738M 0.40 tolerated(0.07) benign(0.441) TCGA-CZ-5987-01 9 126143757 126143757 G T DENND1A Missense_Mutation p.P995Q 0.43 tolerated_low_confidence(0.24) benign(0.005) TCGA-CZ-5987-01 9 84199110 84199110 T C TLE1 3'UTR 0.54 TCGA-CZ-5987-01 9 90311963 90311963 G T DAPK1 Missense_Mutation p.V819L 0.53 tolerated(0.1) benign(0.033) TCGA-CZ-5987-01 X 49049765 49049765 C A SYP Silent p.L193L 0.13 TCGA-CZ-5988-01 11 117263006 117263006 C T CEP164 Missense_Mutation p.A783V 0.28 tolerated(0.34) benign(0.133) TCGA-CZ-5988-01 11 5068193 5068193 T C OR52J3 Silent p.I146I 0.24 TCGA-CZ-5988-01 11 64681821 64681821 C T ATG2A Missense_Mutation p.R108H 0.29 deleterious(0.01) benign(0.022) TCGA-CZ-5988-01 11 6789789 6789789 T - OR2AG2 Frame_Shift_Del p.T134Pfs*3 0.21 TCGA-CZ-5988-01 13 52639390 52639390 G C NEK5 3'UTR 0.36 TCGA-CZ-5988-01 13 88329824 88329824 A G SLITRK5 Silent p.P727P 0.26 TCGA-CZ-5988-01 14 22251232 22251232 T C TRAV7 Missense_Mutation p.V8A 0.29 tolerated(1) benign(0.021) TCGA-CZ-5988-01 14 67799567 67799567 C T MPP5 Missense_Mutation p.T641M 0.05 tolerated(0.54) probably_damaging(0.939) TCGA-CZ-5988-01 14 88983493 88983493 T C PTPN21 Missense_Mutation p.Y98C 0.21 deleterious(0) probably_damaging(0.914) TCGA-CZ-5988-01 16 53358659 53358659 T C CHD9 Missense_Mutation p.I2833T 0.17 unknown(0) TCGA-CZ-5988-01 17 15848766 15848766 C T ADORA2B Silent p.S68S 0.41 TCGA-CZ-5988-01 17 4500589 4500589 G C SMTNL2 Missense_Mutation p.K410N 0.27 tolerated(0.05) possibly_damaging(0.661) TCGA-CZ-5988-01 19 15198107 15198107 C T OR1I1 Silent p.T77T 0.36 TCGA-CZ-5988-01 19 17346354 17346354 G A NR2F6 Silent p.D298D 0.38 TCGA-CZ-5988-01 19 35941423 35941423 C T FFAR2 Silent p.D269D 0.31 TCGA-CZ-5988-01 19 49246716 49246716 G T IZUMO1 Missense_Mutation p.S162Y 0.26 deleterious(0.01) possibly_damaging(0.693) TCGA-CZ-5988-01 19 51728801 51728801 G T CD33 Missense_Mutation p.R122I 0.27 deleterious(0.01) possibly_damaging(0.831) TCGA-CZ-5988-01 1 151105698 151105698 C T SEMA6C Silent p.P717P 0.32 TCGA-CZ-5988-01 1 154574192 154574192 T A ADAR Missense_Mutation p.N309I 0.33 deleterious(0.02) possibly_damaging(0.707) TCGA-CZ-5988-01 1 158735823 158735823 G A OR6N1 Missense_Mutation p.S217F 0.23 deleterious(0) probably_damaging(1) TCGA-CZ-5988-01 1 247752396 247752396 C T OR2G2 Silent p.F245F 0.34 TCGA-CZ-5988-01 1 39877862 39877862 A C KIAA0754 Missense_Mutation p.N506T 0.26 benign(0.001) TCGA-CZ-5988-01 1 44438317 44438317 C G DPH2 3'UTR 0.16 TCGA-CZ-5988-01 1 45794010 45794010 C A HPDL 3'UTR 0.35 TCGA-CZ-5988-01 1 94032907 94032907 T C BCAR3 Missense_Mutation p.H743R 0.35 deleterious(0) probably_damaging(0.999) TCGA-CZ-5988-01 20 31035602 31035602 T C C20orf112 Missense_Mutation p.M370V 0.27 deleterious(0.05) benign(0.413) TCGA-CZ-5988-01 20 47874193 47874193 C G ZNFX1 Missense_Mutation p.E809Q 0.23 tolerated(0.27) possibly_damaging(0.839) TCGA-CZ-5988-01 20 62193088 62193088 C G HELZ2 Silent p.L2234L 0.24 TCGA-CZ-5988-01 21 34924766 34924766 C A SON Missense_Mutation p.P1077T 0.31 possibly_damaging(0.641) TCGA-CZ-5988-01 22 24579610 24579610 G T SUSD2 Silent p.L145L 0.37 TCGA-CZ-5988-01 2 108872055 108872055 G A SULT1C3 Missense_Mutation p.D143N 0.32 deleterious(0) probably_damaging(1) TCGA-CZ-5988-01 2 175957974 175957974 G C ATF2 Missense_Mutation p.P334A 0.27 deleterious(0.04) benign(0.049) TCGA-CZ-5988-01 2 179433486 179433486 G A TTN Silent p.A25791A 0.21 TCGA-CZ-5988-01 2 53955964 53955964 T G ASB3 Missense_Mutation p.K198N 0.22 deleterious(0.03) possibly_damaging(0.579) TCGA-CZ-5988-01 2 54870209 54870209 T C SPTBN1 Silent p.H1316H 0.30 TCGA-CZ-5988-01 2 97492576 97492576 C - CNNM3 Frame_Shift_Del p.V460Wfs*2 0.18 TCGA-CZ-5988-01 3 107096611 107096612 - TA CCDC54 Frame_Shift_Ins p.D61Mfs*5 0.20 TCGA-CZ-5988-01 3 130293121 130293121 C G COL6A6 Missense_Mutation p.T1100R 0.28 tolerated(0.25) possibly_damaging(0.464) TCGA-CZ-5988-01 3 172480568 172480568 C A ECT2 Nonsense_Mutation p.S326* 0.05 TCGA-CZ-5988-01 4 122722621 122722621 A G EXOSC9 Silent p.L14L 0.27 TCGA-CZ-5988-01 4 166239048 166239048 A - KLHL2 Frame_Shift_Del p.E565Nfs*17 0.23 TCGA-CZ-5988-01 4 17819616 17819616 C G NCAPG Silent p.A341A 0.30 TCGA-CZ-5988-01 4 57860916 57860916 A G POLR2B Missense_Mutation p.I154V 0.23 tolerated(0.35) benign(0.042) TCGA-CZ-5988-01 5 41934379 41934379 C T FBXO4 Silent p.F289F 0.25 TCGA-CZ-5988-01 5 66438350 66438350 A T MAST4 Missense_Mutation p.R907W 0.33 probably_damaging(1) TCGA-CZ-5988-01 6 138628466 138628466 C T KIAA1244 Missense_Mutation p.A1302V 0.08 deleterious(0) probably_damaging(0.93) TCGA-CZ-5988-01 7 100684110 100684110 C A MUC17 Missense_Mutation p.T3138N 0.21 probably_damaging(0.977) TCGA-CZ-5988-01 7 103048401 103048401 A G SLC26A5 Missense_Mutation p.L262P 0.19 deleterious(0.01) probably_damaging(1) TCGA-CZ-5988-01 7 113558913 113558913 C A PPP1R3A Missense_Mutation p.D47Y 0.18 deleterious(0.03) possibly_damaging(0.781) TCGA-CZ-5988-01 7 156752728 156752728 G T NOM1 Missense_Mutation p.D498Y 0.32 deleterious(0) probably_damaging(0.998) TCGA-CZ-5988-01 7 95019500 95019500 T A PON3 Missense_Mutation p.D56V 0.21 tolerated(0.11) benign(0.097) TCGA-CZ-5988-01 8 30700538 30700538 G A TEX15 Missense_Mutation p.A1999V 0.43 deleterious(0) probably_damaging(0.998) TCGA-CZ-5988-01 9 78774010 78774010 C T PCSK5 Silent p.I514I 0.23 TCGA-CZ-5988-01 X 63488824 63488824 G A MTMR8 Missense_Mutation p.L570F 0.57 deleterious_low_confidence(0.03) benign(0.265) TCGA-CZ-5989-01 10 104129688 104129688 G T GBF1 Missense_Mutation p.G1095C 0.25 deleterious(0.02) probably_damaging(0.94) TCGA-CZ-5989-01 10 25312229 25312229 A G THNSL1 Missense_Mutation p.D26G 0.28 tolerated_low_confidence(0.6) benign(0) TCGA-CZ-5989-01 10 96805619 96805619 G A CYP2C8 Silent p.S303S 0.19 TCGA-CZ-5989-01 11 1025856 1025856 G T MUC6 Silent p.I916I 0.12 TCGA-CZ-5989-01 11 28116237 28116244 CATCCATG - KIF18A Nonsense_Mutation p.C143* 0.19 TCGA-CZ-5989-01 12 22015946 22015946 C A ABCC9 Missense_Mutation p.W760C 0.15 deleterious(0) probably_damaging(1) TCGA-CZ-5989-01 12 53242514 53242514 C T KRT78 Silent p.G67G 0.34 TCGA-CZ-5989-01 12 56863103 56863103 G A SPRYD4 Nonsense_Mutation p.W122* 0.19 TCGA-CZ-5989-01 14 71267589 71267589 G A MAP3K9 Silent p.A205A 0.32 TCGA-CZ-5989-01 15 42434287 42434287 C T PLA2G4F Silent p.L815L 0.15 TCGA-CZ-5989-01 15 59368174 59368177 AGCA - RNF111 Frame_Shift_Del p.S570Tfs*48 0.19 TCGA-CZ-5989-01 15 72597100 72597100 A C CELF6 Missense_Mutation p.S127R 0.11 deleterious(0.01) benign(0.223) TCGA-CZ-5989-01 15 91478784 91478784 T A UNC45A Missense_Mutation p.V21E 0.20 tolerated(0.7) benign(0.129) TCGA-CZ-5989-01 16 46781877 46781877 C T MYLK3 Missense_Mutation p.G77R 0.21 tolerated(0.54) benign(0.01) TCGA-CZ-5989-01 16 50763736 50763736 A T NOD2 Missense_Mutation p.N992Y 0.17 deleterious(0.03) benign(0.078) TCGA-CZ-5989-01 16 71487199 71487199 A T ZNF23 Missense_Mutation p.L30Q 0.18 tolerated(0.18) benign(0.046) TCGA-CZ-5989-01 17 3486632 3486632 C T SHPK Silent p.G492G 0.20 TCGA-CZ-5989-01 17 48432223 48432223 C A XYLT2 Missense_Mutation p.D271E 0.21 tolerated(0.1) benign(0.03) TCGA-CZ-5989-01 17 67023934 67023934 G A ABCA9 Silent p.H546H 0.18 TCGA-CZ-5989-01 17 74041394 74041394 G T SRP68 Missense_Mutation p.T458N 0.10 deleterious(0.03) possibly_damaging(0.786) TCGA-CZ-5989-01 18 12674675 12674675 C G CEP76 Missense_Mutation p.E567D 0.06 deleterious(0.01) possibly_damaging(0.671) TCGA-CZ-5989-01 18 57103282 57103282 C T CCBE1 Missense_Mutation p.R360Q 0.19 tolerated(0.28) benign(0.004) TCGA-CZ-5989-01 19 10073521 10073521 A T COL5A3 Missense_Mutation p.Y1609N 0.16 unknown(0) TCGA-CZ-5989-01 1 100933604 100933604 T A CDC14A Missense_Mutation p.C311S 0.03 deleterious(0.01) probably_damaging(0.987) TCGA-CZ-5989-01 1 183617219 183617219 G A APOBEC4 Missense_Mutation p.T233I 0.03 deleterious(0.02) benign(0.403) TCGA-CZ-5989-01 1 247752195 247752195 T C OR2G2 Silent p.D178D 0.17 TCGA-CZ-5989-01 1 63300488 63300488 T G ATG4C Missense_Mutation p.F352V 0.23 tolerated(0.45) probably_damaging(1) TCGA-CZ-5989-01 20 33872048 33872048 G C EIF6 Missense_Mutation p.L42V 0.17 deleterious(0.03) benign(0.442) TCGA-CZ-5989-01 20 43572209 43572210 - TTA TOMM34 In_Frame_Ins p.Y237delinsLN 0.24 TCGA-CZ-5989-01 20 46252829 46252829 T C NCOA3 Splice_Site p.X86_splice 0.18 TCGA-CZ-5989-01 2 112944841 112944841 G A FBLN7 Missense_Mutation p.A360T 0.20 tolerated(0.19) probably_damaging(0.999) TCGA-CZ-5989-01 3 10188202 10188212 CCTTTGGCTCT - VHL Frame_Shift_Del p.L116Qfs*12 0.23 TCGA-CZ-5989-01 3 141163046 141163046 C T ZBTB38 Nonsense_Mutation p.Q606* 0.23 TCGA-CZ-5989-01 3 52598238 52598238 C - PBRM1 Frame_Shift_Del p.V1210Cfs*34 0.19 TCGA-CZ-5989-01 4 1161269 1161270 - T SPON2 Frame_Shift_Ins p.N329Kfs*42 0.29 TCGA-CZ-5989-01 4 160260314 160260314 G A RAPGEF2 Missense_Mutation p.R620H 0.32 tolerated(0.1) probably_damaging(0.909) TCGA-CZ-5989-01 4 8416611 8416611 G A ACOX3 Silent p.L141L 0.21 TCGA-CZ-5989-01 5 140431290 140431290 C A PCDHB1 Missense_Mutation p.R79S 0.20 tolerated(0.43) possibly_damaging(0.448) TCGA-CZ-5989-01 5 38950756 38950756 T C RICTOR Missense_Mutation p.N1065S 0.22 tolerated(0.84) benign(0.002) TCGA-CZ-5989-01 6 112671198 112671198 T C RFPL4B Silent p.D96D 0.24 TCGA-CZ-5989-01 6 135539120 135539120 A G MYB 3'UTR 0.19 TCGA-CZ-5989-01 6 165715646 165715646 G A C6orf118 Silent p.D55D 0.04 TCGA-CZ-5989-01 6 170627903 170627903 G A FAM120B Missense_Mutation p.M475I 0.04 tolerated_low_confidence(0.13) benign(0.01) TCGA-CZ-5989-01 6 27222582 27222582 G A PRSS16 Missense_Mutation p.A421T 0.25 deleterious(0.03) possibly_damaging(0.593) TCGA-CZ-5989-01 6 33257668 33257668 A G PFDN6 Missense_Mutation p.E12G 0.18 deleterious(0) possibly_damaging(0.624) TCGA-CZ-5989-01 7 158483355 158483355 A T NCAPG2 Missense_Mutation p.C148S 0.06 deleterious(0) probably_damaging(0.952) TCGA-CZ-5989-01 8 143310906 143310906 G A TSNARE1 Missense_Mutation p.S494L 0.22 tolerated(0.66) benign(0.002) TCGA-CZ-5989-01 8 67064733 67064733 A C TRIM55 Missense_Mutation p.E369D 0.23 tolerated(0.13) benign(0.003) TCGA-CZ-5989-01 8 81411971 81411971 T C ZBTB10 Silent p.N405N 0.25 TCGA-CZ-5989-01 8 99101460 99101460 C G C8orf47 Missense_Mutation p.T72R 0.04 deleterious(0) probably_damaging(0.934) TCGA-CZ-5989-01 9 128724472 128724472 C T PBX3 Silent p.V367V 0.31 TCGA-CZ-5989-01 9 136674238 136674238 T A VAV2 Missense_Mutation p.D197V 0.23 deleterious(0) probably_damaging(0.943) TCGA-DV-5565-01 11 118899998 118899998 G A SLC37A4 Missense_Mutation p.R28C 0.34 deleterious(0) probably_damaging(1) TCGA-DV-5565-01 11 124910539 124910539 A T CCDC15 Missense_Mutation p.N930Y 0.33 deleterious(0) possibly_damaging(0.89) TCGA-DV-5565-01 11 20483680 20483680 G A PRMT3 Silent p.P409P 0.04 TCGA-DV-5565-01 11 32953537 32953537 G C QSER1 Missense_Mutation p.E116Q 0.33 deleterious(0.03) possibly_damaging(0.894) TCGA-DV-5565-01 11 619336 619336 G C CDHR5 Missense_Mutation p.Q450E 0.31 tolerated(0.1) possibly_damaging(0.764) TCGA-DV-5565-01 11 75511654 75511654 A - DGAT2 3'UTR 0.44 TCGA-DV-5565-01 11 78277313 78277313 G T NARS2 Missense_Mutation p.F126L 0.35 deleterious(0) possibly_damaging(0.869) TCGA-DV-5565-01 12 57589876 57589876 A G LRP1 Missense_Mutation p.K2903R 0.17 benign(0.006) TCGA-DV-5565-01 13 25670499 25670499 G A PABPC3 Missense_Mutation p.A55T 0.35 deleterious(0.04) benign(0.354) TCGA-DV-5565-01 13 30801682 30801682 T C KATNAL1 Silent p.G338G 0.38 TCGA-DV-5565-01 13 36878354 36878354 A C SPG20 3'UTR 0.28 TCGA-DV-5565-01 13 44971646 44971646 A G SERP2 3'UTR 0.18 TCGA-DV-5565-01 13 52718098 52718098 C T NEK3 Missense_Mutation p.V277I 0.27 tolerated(0.58) benign(0.002) TCGA-DV-5565-01 14 25100162 25100162 T C GZMB 3'UTR 0.36 TCGA-DV-5565-01 15 40568170 40568170 C T PAK6 Missense_Mutation p.R641W 0.36 deleterious(0) probably_damaging(1) TCGA-DV-5565-01 16 12155455 12155455 T C SNX29 Missense_Mutation p.S399P 0.36 deleterious_low_confidence(0.03) benign(0.247) TCGA-DV-5565-01 16 4165223 4165223 C T ADCY9 Missense_Mutation p.R74H 0.10 tolerated_low_confidence(0.13) possibly_damaging(0.668) TCGA-DV-5565-01 16 84472822 84472822 C T ATP2C2 Missense_Mutation p.T346M 0.10 deleterious(0) probably_damaging(0.989) TCGA-DV-5565-01 17 16285911 16285911 A G UBB Silent p.%3D 0.53 TCGA-DV-5565-01 17 27889659 27889659 C A ABHD15 Nonsense_Mutation p.G443* 0.34 TCGA-DV-5565-01 17 28791910 28791910 A G CPD 3'UTR 0.32 TCGA-DV-5565-01 17 3030271 3030271 G C OR1G1 Missense_Mutation p.P192R 0.52 deleterious(0) possibly_damaging(0.894) TCGA-DV-5565-01 17 37009161 37009161 C A RPL23 Intron 0.41 TCGA-DV-5565-01 18 43440143 43440143 G T EPG5 Missense_Mutation p.A2312D 0.39 deleterious(0) probably_damaging(0.991) TCGA-DV-5565-01 18 67684795 67684795 T A RTTN Missense_Mutation p.D2090V 0.35 deleterious(0) probably_damaging(0.967) TCGA-DV-5565-01 18 9254693 9254693 G A ANKRD12 Silent p.L476L 0.39 TCGA-DV-5565-01 19 14854320 14854320 C A EMR2 Missense_Mutation p.W792L 0.34 deleterious(0.02) benign(0.32) TCGA-DV-5565-01 19 35175650 35175650 G A ZNF302 Silent p.K236K 0.23 TCGA-DV-5565-01 19 38609984 38609984 G C SIPA1L3 Missense_Mutation p.G777A 0.33 deleterious(0) probably_damaging(0.971) TCGA-DV-5565-01 19 9203934 9203934 A T OR1M1 Missense_Mutation p.N5I 0.32 deleterious(0) probably_damaging(0.998) TCGA-DV-5565-01 1 152733041 152733041 G A KPRP Missense_Mutation p.R326Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-DV-5565-01 1 183094629 183094629 C - LAMC1 Frame_Shift_Del p.C916Vfs*123 0.32 TCGA-DV-5565-01 1 183920174 183920174 A C COLGALT2 Missense_Mutation p.I368S 0.35 deleterious(0) possibly_damaging(0.457) TCGA-DV-5565-01 1 202710756 202710756 T - KDM5B Frame_Shift_Del p.D895Vfs*26 0.31 TCGA-DV-5565-01 1 206944318 206944318 G A IL10 Silent p.D104D 0.30 TCGA-DV-5565-01 1 40705015 40705015 A G RLF Silent p.T1547T 0.39 TCGA-DV-5565-01 1 67442342 67442342 A G MIER1 Missense_Mutation p.Y389C 0.34 deleterious(0) probably_damaging(0.999) TCGA-DV-5565-01 20 30898460 30898460 G T KIF3B Missense_Mutation p.D294Y 0.45 deleterious(0) probably_damaging(0.998) TCGA-DV-5565-01 20 39802104 39802104 G A PLCG1 Silent p.V1108V 0.31 TCGA-DV-5565-01 20 42340179 42340179 G T MYBL2 Missense_Mutation p.A553S 0.36 tolerated(0.1) possibly_damaging(0.9) TCGA-DV-5565-01 20 62839567 62839567 T A MYT1 Missense_Mutation p.Y340N 0.44 probably_damaging(0.924) TCGA-DV-5565-01 21 43867186 43867186 G - UBASH3A Frame_Shift_Del p.C623Sfs*15 0.27 TCGA-DV-5565-01 22 19175147 19175147 T A CLTCL1 Missense_Mutation p.I1510F 0.39 deleterious(0.01) benign(0.21) TCGA-DV-5565-01 22 36894108 36894108 G A FOXRED2 Missense_Mutation p.R438W 0.38 deleterious(0) probably_damaging(0.918) TCGA-DV-5565-01 2 113788714 113788714 G C IL36B Missense_Mutation p.S11C 0.32 tolerated_low_confidence(0.12) benign(0.072) TCGA-DV-5565-01 2 162999679 162999679 T A GCG 3'UTR 0.39 TCGA-DV-5565-01 2 17697759 17697759 T A RAD51AP2 Missense_Mutation p.N642Y 0.38 deleterious(0.01) possibly_damaging(0.847) TCGA-DV-5565-01 2 179667069 179667069 C T TTN Splice_Site p.X31_splice 0.34 TCGA-DV-5565-01 2 28851970 28851970 G A PLB1 Missense_Mutation p.A1246T 0.33 tolerated(0.48) benign(0.015) TCGA-DV-5565-01 2 74333549 74333549 C G TET3 3'UTR 0.19 TCGA-DV-5565-01 3 197682717 197682730 CTTAAATTGATTTG - RPL35A 3'UTR 0.29 TCGA-DV-5565-01 3 32031883 32031883 C A ZNF860 Missense_Mutation p.R438S 0.53 tolerated(0.6) benign(0.028) TCGA-DV-5565-01 4 186560134 186560134 A G SORBS2 Intron 0.29 TCGA-DV-5565-01 4 74017194 74017194 C T ANKRD17 Missense_Mutation p.E428K 0.36 probably_damaging(0.994) TCGA-DV-5565-01 4 88029399 88029399 G T AFF1 Missense_Mutation p.D489Y 0.32 deleterious(0) unknown(0) TCGA-DV-5565-01 5 127613688 127613688 T G FBN2 Missense_Mutation p.E2452A 0.31 deleterious(0) probably_damaging(0.983) TCGA-DV-5565-01 6 26251891 26251899 GCTAAGTCC - HIST1H2BH In_Frame_Del p.K6_A8del 0.18 TCGA-DV-5565-01 7 100484019 100484019 T G SRRT Missense_Mutation p.L537R 0.12 deleterious(0) possibly_damaging(0.483) TCGA-DV-5565-01 7 116849867 116849867 C G ST7 Missense_Mutation p.I427M 0.50 deleterious(0) probably_damaging(0.971) TCGA-DV-5565-01 7 127894682 127894682 G A LEP Missense_Mutation p.G124S 0.25 tolerated(0.28) benign(0.03) TCGA-DV-5565-01 7 30963288 30963288 G T AQP1 3'UTR 0.50 TCGA-DV-5565-01 7 73123410 73123410 C G STX1A Missense_Mutation p.D25H 0.34 deleterious(0) possibly_damaging(0.809) TCGA-DV-5565-01 7 91722542 91722542 C A AKAP9 Missense_Mutation p.L3164M 0.55 probably_damaging(0.992) TCGA-DV-5565-01 8 105440278 105440278 T C DPYS Missense_Mutation p.D341G 0.33 deleterious(0) probably_damaging(0.97) TCGA-DV-5565-01 8 110355657 110355657 A C ENY2 Missense_Mutation p.K85Q 0.32 tolerated(0.25) benign(0.238) TCGA-DV-5565-01 8 2807769 2807769 C T CSMD1 Nonsense_Mutation p.W3433* 0.55 TCGA-DV-5565-01 8 444511 444511 T C TDRP Silent p.K65K 0.53 TCGA-DV-5565-01 9 107526483 107526483 G A NIPSNAP3B 5'UTR 0.26 TCGA-DV-5565-01 9 116931547 116931547 T A COL27A1 Missense_Mutation p.L571Q 0.31 unknown(0) TCGA-DV-5565-01 9 125585437 125585437 T G PDCL Missense_Mutation p.Q71P 0.30 deleterious(0) probably_damaging(0.999) TCGA-DV-5565-01 9 15723685 15723685 G A CCDC171 Missense_Mutation p.A478T 0.17 tolerated(0.64) benign(0.001) TCGA-DV-5565-01 9 21350656 21350656 G T IFNA6 Silent p.I77I 0.43 TCGA-DV-5565-01 9 79324116 79324116 G C PRUNE2 Nonsense_Mutation p.S1025* 0.38 TCGA-DV-5566-01 10 105830254 105830254 G T COL17A1 Silent p.S179S 0.33 TCGA-DV-5566-01 11 102593358 102593358 G A MMP8 Missense_Mutation p.S50F 0.25 tolerated(1) benign(0.017) TCGA-DV-5566-01 11 111754626 111754626 G T C11orf1 3'UTR 0.07 TCGA-DV-5566-01 11 117156011 117156014 GTCT - RNF214 3'UTR 0.31 TCGA-DV-5566-01 11 43284031 43284031 A T HNRNPKP3 RNA 0.24 TCGA-DV-5566-01 11 55999588 55999588 T C OR5T2 Silent p.K358K 0.25 TCGA-DV-5566-01 11 60236069 60236069 G C MS4A1 3'UTR 0.27 TCGA-DV-5566-01 11 64051862 64051862 A G GPR137 Silent p.R8R 0.17 TCGA-DV-5566-01 12 2027483 2027483 G A CACNA2D4 Missense_Mutation p.L53F 0.29 tolerated(0.14) benign(0.074) TCGA-DV-5566-01 12 21014049 21014049 C T SLCO1B3 Missense_Mutation p.T153I 0.26 deleterious(0.04) benign(0.075) TCGA-DV-5566-01 12 51758021 51758021 G C GALNT6 Silent p.P311P 0.33 TCGA-DV-5566-01 12 52881649 52881649 T C KRT6A Missense_Mutation p.Y517C 0.30 tolerated(0.14) unknown(0) TCGA-DV-5566-01 13 23906942 23906942 G A SACS Silent p.F3691F 0.28 TCGA-DV-5566-01 13 53239772 53239772 G A SUGT1 Silent p.K173K 0.28 TCGA-DV-5566-01 14 35777216 35777216 T C PSMA6 Silent p.A31A 0.31 TCGA-DV-5566-01 14 35777217 35777217 A C PSMA6 Missense_Mutation p.I32L 0.31 deleterious(0.03) benign(0.278) TCGA-DV-5566-01 15 75111509 75111509 G A LMAN1L Missense_Mutation p.G205D 0.05 deleterious(0.03) possibly_damaging(0.585) TCGA-DV-5566-01 16 67942857 67942857 G A PSKH1 Missense_Mutation p.G69S 0.26 tolerated(0.27) benign(0.001) TCGA-DV-5566-01 17 15995284 15995284 G A NCOR1 Missense_Mutation p.S970L 0.07 possibly_damaging(0.66) TCGA-DV-5566-01 17 16852092 16852092 C G TNFRSF13B Missense_Mutation p.R135S 0.27 deleterious(0.05) possibly_damaging(0.59) TCGA-DV-5566-01 17 37948930 37948930 A T IKZF3 Missense_Mutation p.H140Q 0.25 deleterious(0) probably_damaging(1) TCGA-DV-5566-01 17 39021185 39021185 C A KRT12 Missense_Mutation p.G227V 0.31 deleterious(0) benign(0.372) TCGA-DV-5566-01 17 56283457 56283457 C T MKS1 Missense_Mutation p.G555R 0.11 tolerated_low_confidence(0.08) benign(0.003) TCGA-DV-5566-01 17 72700848 72700848 T A CD300LF Nonsense_Mutation p.K51* 0.22 TCGA-DV-5566-01 19 10818183 10818183 C T QTRT1 Missense_Mutation p.R180C 0.38 deleterious(0) probably_damaging(0.995) TCGA-DV-5566-01 19 38103228 38103228 T C ZNF540 Silent p.H349H 0.33 TCGA-DV-5566-01 19 39443305 39443305 G C FBXO17 Intron 0.32 TCGA-DV-5566-01 19 58490014 58490014 T A ZNF606 Missense_Mutation p.K678N 0.33 tolerated(0.08) probably_damaging(0.998) TCGA-DV-5566-01 1 110888165 110888165 T C RBM15 Silent p.F956F 0.26 TCGA-DV-5566-01 1 22970666 22970666 C T C1QC Silent p.Y50Y 0.25 TCGA-DV-5566-01 1 27180275 27180275 A G ZDHHC18 Missense_Mutation p.S370G 0.08 deleterious(0.05) benign(0.13) TCGA-DV-5566-01 20 35381212 35381212 A T DSN1 Silent p.S350S 0.22 TCGA-DV-5566-01 20 44642372 44642372 C G MMP9 Missense_Mutation p.L563V 0.20 tolerated(0.05) probably_damaging(0.995) TCGA-DV-5566-01 22 23223512 23223512 C T IGLV3-1 Silent p.S94S 0.22 TCGA-DV-5566-01 22 32017090 32017090 G C PISD Missense_Mutation p.R212G 0.24 tolerated(0.21) benign(0.109) TCGA-DV-5566-01 22 41914522 41914522 G A ACO2 Silent p.L326L 0.17 TCGA-DV-5566-01 22 46763005 46763005 A T CELSR1 Missense_Mutation p.V2697D 0.29 deleterious(0) probably_damaging(0.968) TCGA-DV-5566-01 2 211159133 211159133 G A MYL1 Missense_Mutation p.A105V 0.24 tolerated(0.71) benign(0.014) TCGA-DV-5566-01 2 228758531 228758531 A C DAW1 Missense_Mutation p.D113A 0.20 deleterious(0) probably_damaging(1) TCGA-DV-5566-01 2 73161028 73161028 G A EMX1 Missense_Mutation p.R273H 0.15 deleterious(0) probably_damaging(0.999) TCGA-DV-5566-01 3 118621765 118621765 G T IGSF11 Missense_Mutation p.H300N 0.23 tolerated(0.6) possibly_damaging(0.488) TCGA-DV-5566-01 3 52692298 52692298 G A PBRM1 Nonsense_Mutation p.Q188* 0.38 TCGA-DV-5566-01 4 109543167 109543191 AACAAAACTAGGCTGTAAGTATTTC - RPL34 Splice_Site p.X18_splice 0.27 TCGA-DV-5566-01 4 144797924 144797924 G C GYPE Missense_Mutation p.S74C 0.07 tolerated_low_confidence(0.1) possibly_damaging(0.843) TCGA-DV-5566-01 5 178045711 178045711 C T CLK4 Missense_Mutation p.R77K 0.28 deleterious(0.05) probably_damaging(0.986) TCGA-DV-5566-01 6 119623209 119623209 T G MAN1A1 Missense_Mutation p.K254Q 0.28 tolerated(0.36) benign(0.01) TCGA-DV-5566-01 6 122753411 122753411 G A HSF2 3'UTR 0.27 TCGA-DV-5566-01 6 138584327 138584327 C T KIAA1244 Silent p.V569V 0.23 TCGA-DV-5566-01 6 139495618 139495628 GGCACCAGCTG - HECA Frame_Shift_Del p.Q472Yfs*20 0.40 TCGA-DV-5566-01 6 152470618 152470618 G A SYNE1 Silent p.R8212R 0.34 TCGA-DV-5566-01 6 161139489 161139489 G T PLG Splice_Site p.X317_splice 0.09 TCGA-DV-5566-01 6 170118956 170118956 C T PHF10 Missense_Mutation p.G85R 0.27 deleterious(0) possibly_damaging(0.894) TCGA-DV-5566-01 6 31939745 31939745 G A STK19 5'UTR 0.24 TCGA-DV-5566-01 6 33271958 33271958 A G TAPBP Missense_Mutation p.L416P 0.08 deleterious(0) probably_damaging(0.999) TCGA-DV-5566-01 6 80636042 80636043 - TC ELOVL4 Frame_Shift_Ins p.S53Efs*16 0.27 TCGA-DV-5566-01 6 90340623 90340627 ATCAG - ANKRD6 Frame_Shift_Del p.N695Kfs*6 0.39 TCGA-DV-5566-01 7 137593138 137593138 G A CREB3L2 Missense_Mutation p.H210Y 0.24 deleterious(0) benign(0.091) TCGA-DV-5566-01 7 158109563 158109563 C G PTPRN2 Silent p.S75S 0.42 TCGA-DV-5566-01 7 20682846 20682846 G T ABCB5 Missense_Mutation p.L118F 0.20 tolerated(0.17) possibly_damaging(0.657) TCGA-DV-5566-01 8 120577144 120577144 C A ENPP2 Missense_Mutation p.R780I 0.04 deleterious(0) possibly_damaging(0.865) TCGA-DV-5566-01 8 14412350 14412350 T C SGCZ Missense_Mutation p.Y42C 0.07 deleterious(0) probably_damaging(0.961) TCGA-DV-5566-01 8 38853913 38853913 G A TM2D2 Nonsense_Mutation p.Q16* 0.21 TCGA-DV-5566-01 8 86572594 86572594 C T REXO1L1P 3'UTR 0.12 TCGA-DV-5566-01 8 99101670 99101670 C T C8orf47 Missense_Mutation p.S142F 0.22 deleterious(0) benign(0.001) TCGA-DV-5566-01 9 134354697 134354697 A G PRRC2B Missense_Mutation p.Q1606R 0.08 deleterious(0) possibly_damaging(0.579) TCGA-DV-5566-01 9 79897064 79897064 T G VPS13A Missense_Mutation p.L998V 0.29 deleterious(0) probably_damaging(0.998) TCGA-DV-5566-01 X 152936428 152936428 G A PNCK Silent p.L334L 0.21 TCGA-DV-5566-01 X 153583340 153583340 C A FLNA Silent p.T1690T 0.32 TCGA-DV-5566-01 X 19398361 19398361 G C MAP3K15 Missense_Mutation p.D822E 0.12 deleterious(0.02) benign(0.068) TCGA-DV-5566-01 X 47061630 47061630 A G UBA1 Missense_Mutation p.K296R 0.04 deleterious(0) probably_damaging(0.999) TCGA-DV-5566-01 X 53409158 53409158 G A SMC1A Silent p.I1144I 0.09 TCGA-DV-5567-01 10 5827177 5827177 A G GDI2 Missense_Mutation p.L216S 0.30 deleterious(0) probably_damaging(0.996) TCGA-DV-5567-01 11 32998123 32998123 C T QSER1 3'UTR 0.08 TCGA-DV-5567-01 13 111109755 111109755 G A COL4A2 Missense_Mutation p.G469R 0.34 probably_damaging(1) TCGA-DV-5567-01 14 50912825 50912825 C T MAP4K5 Missense_Mutation p.R386H 0.32 tolerated(0.17) benign(0.003) TCGA-DV-5567-01 14 75471554 75471554 G T EIF2B2 Missense_Mutation p.R183L 0.41 deleterious(0.04) benign(0.161) TCGA-DV-5567-01 15 68510965 68510965 T C CLN6 Missense_Mutation p.E36G 0.08 tolerated_low_confidence(0.12) benign(0.053) TCGA-DV-5567-01 19 56370616 56370616 G A NLRP4 Splice_Site p.X619_splice 0.49 TCGA-DV-5567-01 1 65095137 65095137 G C CACHD1 Missense_Mutation p.C155S 0.34 tolerated(0.27) benign(0.126) TCGA-DV-5567-01 20 3270820 3270820 C A C20orf194 Missense_Mutation p.S761I 0.39 tolerated(0.07) benign(0.009) TCGA-DV-5567-01 20 49626127 49626127 G A KCNG1 Missense_Mutation p.P250L 0.26 deleterious(0) probably_damaging(0.999) TCGA-DV-5567-01 2 183616491 183616491 G A DNAJC10 Nonsense_Mutation p.W471* 0.34 TCGA-DV-5567-01 2 210894585 210894585 C A KANSL1L Missense_Mutation p.S738I 0.35 tolerated(0.2) benign(0.272) TCGA-DV-5567-01 3 10191563 10191563 G T VHL Nonsense_Mutation p.E186* 0.44 TCGA-DV-5567-01 3 190127744 190127744 C T CLDN16 Silent p.A279A 0.31 TCGA-DV-5567-01 3 195447895 195447895 G T MUC20 Missense_Mutation p.G6V 0.11 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DV-5567-01 5 139747357 139747357 T C SLC4A9 Missense_Mutation p.L767P 0.09 deleterious(0) probably_damaging(0.971) TCGA-DV-5567-01 5 159520204 159520204 C T PWWP2A Missense_Mutation p.E485K 0.04 deleterious(0.04) possibly_damaging(0.83) TCGA-DV-5567-01 7 72658364 72658364 A G GTF2IRD2P1 RNA 0.10 TCGA-DV-5567-01 9 137693818 137693818 G A COL5A1 Missense_Mutation p.G991S 0.26 unknown(0) TCGA-DV-5567-01 X 122459895 122459895 C T GRIA3 Missense_Mutation p.A176V 0.04 tolerated(0.23) possibly_damaging(0.789) TCGA-DV-5567-01 X 57935934 57935934 G A ZXDA Silent p.C307C 0.30 TCGA-DV-5568-01 10 89711910 89711910 T G PTEN Nonsense_Mutation p.Y176* 0.34 TCGA-DV-5568-01 11 65836351 65836351 T C SF3B2 3'UTR 0.08 TCGA-DV-5568-01 12 42839839 42839839 T C PPHLN1 Intron 0.14 TCGA-DV-5568-01 13 33716508 33716508 C A STARD13 Missense_Mutation p.R109L 0.09 deleterious(0) probably_damaging(1) TCGA-DV-5568-01 14 20249071 20249071 T C OR4M1 Missense_Mutation p.L197S 0.11 deleterious(0.02) possibly_damaging(0.87) TCGA-DV-5568-01 14 32562855 32562855 A T ARHGAP5 Missense_Mutation p.I994F 0.23 tolerated(0.89) benign(0.013) TCGA-DV-5568-01 14 65207861 65207861 G T PLEKHG3 Missense_Mutation p.E486D 0.38 tolerated(0.15) benign(0.018) TCGA-DV-5568-01 15 78922278 78922278 C T CHRNB4 Silent p.G123G 0.17 TCGA-DV-5568-01 16 2495577 2495577 T - CCNF Frame_Shift_Del p.Y350Tfs*23 0.27 TCGA-DV-5568-01 16 720318 720318 C T RHOT2 Silent p.P133P 0.25 TCGA-DV-5568-01 18 29101062 29101062 C G DSG2 Missense_Mutation p.L127V 0.31 tolerated(0.11) benign(0.086) TCGA-DV-5568-01 19 50165870 50165870 T C IRF3 Missense_Mutation p.D138G 0.08 tolerated(0.05) benign(0.103) TCGA-DV-5568-01 1 161201078 161201078 C A NR1I3 Intron 0.29 TCGA-DV-5568-01 1 222802075 222802075 A T MIA3 Missense_Mutation p.N505Y 0.20 deleterious(0.01) benign(0.246) TCGA-DV-5568-01 20 44515509 44515509 T C SPATA25 Missense_Mutation p.S111G 0.30 tolerated_low_confidence(0.57) benign(0.006) TCGA-DV-5568-01 21 11026811 11026811 C T BAGE2 RNA 0.21 TCGA-DV-5568-01 22 32108706 32108706 T C PRR14L Missense_Mutation p.M1707V 0.09 tolerated(0.26) benign(0.005) TCGA-DV-5568-01 5 101575087 101575087 T C SLCO4C1 Missense_Mutation p.I628V 0.23 tolerated(0.07) benign(0.252) TCGA-DV-5568-01 5 172377811 172377811 A G ERGIC1 Missense_Mutation p.M289V 0.11 deleterious(0.01) benign(0.002) TCGA-DV-5568-01 5 67589601 67589609 AGTTTCAAG - PIK3R1 In_Frame_Del p.F456_E458del 0.14 TCGA-DV-5568-01 5 82836964 82836964 A G VCAN Silent p.K2714K 0.06 TCGA-DV-5568-01 6 129823916 129823916 G A LAMA2 Missense_Mutation p.R2786H 0.03 deleterious(0.03) benign(0.002) TCGA-DV-5568-01 7 100479850 100479850 A C SRRT Missense_Mutation p.K192T 0.19 deleterious(0) probably_damaging(0.999) TCGA-DV-5568-01 8 139153439 139153439 A T FAM135B Splice_Site p.X1264_splice 0.24 TCGA-DV-5568-01 8 77762484 77762484 C G ZFHX4 Missense_Mutation p.P1284A 0.27 possibly_damaging(0.728) TCGA-DV-5568-01 9 138713885 138713885 C T CAMSAP1 Silent p.L874L 0.25 TCGA-DV-A4VX-01 10 43089501 43089501 T C ZNF33B Silent p.K299K 0.30 TCGA-DV-A4VX-01 10 48370426 48370426 G T ZNF488 Intron 0.33 TCGA-DV-A4VX-01 10 48389979 48389979 C G RBP3 Missense_Mutation p.G300A 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-DV-A4VX-01 11 103058147 103058147 T C DYNC2H1 Silent p.S2324S 0.81 TCGA-DV-A4VX-01 11 134184277 134184277 T G GLB1L3 Missense_Mutation p.F574C 0.37 deleterious(0) probably_damaging(0.968) TCGA-DV-A4VX-01 11 35231562 35231562 G T CD44 Missense_Mutation p.D523Y 0.39 deleterious(0) probably_damaging(0.993) TCGA-DV-A4VX-01 11 56185324 56185324 G C OR5R1 Missense_Mutation p.P129A 0.32 deleterious(0) probably_damaging(0.997) TCGA-DV-A4VX-01 12 105462501 105462501 G T ALDH1L2 Missense_Mutation p.A197D 0.17 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-DV-A4VX-01 12 105462502 105462502 C T ALDH1L2 Missense_Mutation p.A197T 0.17 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-DV-A4VX-01 12 108641976 108641976 C T WSCD2 Silent p.F518F 0.52 TCGA-DV-A4VX-01 12 111957760 111957760 A G ATXN2 Silent p.D463D 0.21 TCGA-DV-A4VX-01 12 1943728 1943728 C T LRTM2 Silent p.C318C 0.53 TCGA-DV-A4VX-01 12 22487006 22487006 T C ST8SIA1 Missense_Mutation p.E54G 0.26 tolerated(0.09) benign(0.272) TCGA-DV-A4VX-01 12 75678844 75678844 C T CAPS2 Nonsense_Mutation p.W490* 0.07 TCGA-DV-A4VX-01 12 94703797 94703797 A T CCDC41 Missense_Mutation p.I633N 0.25 deleterious(0) probably_damaging(0.999) TCGA-DV-A4VX-01 13 103288679 103288679 G T TPP2 Missense_Mutation p.V539F 0.03 tolerated(0.7) benign(0.032) TCGA-DV-A4VX-01 13 113173319 113173319 G T TUBGCP3 Silent p.L640L 0.56 TCGA-DV-A4VX-01 13 20304433 20304433 T C PSPC1 Silent p.E368E 0.42 TCGA-DV-A4VX-01 13 99515800 99515800 G C DOCK9 Missense_Mutation p.L1097V 0.16 tolerated(0.35) possibly_damaging(0.752) TCGA-DV-A4VX-01 14 32560518 32560518 T - ARHGAP5 Frame_Shift_Del p.F215Lfs*10 0.10 TCGA-DV-A4VX-01 14 56083256 56083256 A - KTN1 Frame_Shift_Del p.T183Lfs*41 0.37 TCGA-DV-A4VX-01 14 77797565 77797565 G - GSTZ1 3'UTR 0.24 TCGA-DV-A4VX-01 16 22132922 22132922 C A VWA3A Nonsense_Mutation p.S447* 0.33 TCGA-DV-A4VX-01 16 71713301 71713301 T G PHLPP2 Missense_Mutation p.N343T 0.45 tolerated(0.61) benign(0.03) TCGA-DV-A4VX-01 17 27003342 27003342 G A SUPT6H Missense_Mutation p.S264N 0.35 tolerated(0.24) benign(0.135) TCGA-DV-A4VX-01 17 28270618 28270618 G C EFCAB5 Missense_Mutation p.E47D 0.30 tolerated_low_confidence(0.52) benign(0.003) TCGA-DV-A4VX-01 17 40990163 40990163 G C PSME3 Missense_Mutation p.V116L 0.32 tolerated(0.32) probably_damaging(0.974) TCGA-DV-A4VX-01 17 67081792 67081792 C T ABCA6 Missense_Mutation p.G1335R 0.36 deleterious(0) probably_damaging(1) TCGA-DV-A4VX-01 18 13826279 13826279 G T MC5R Missense_Mutation p.G172V 0.36 tolerated(1) possibly_damaging(0.866) TCGA-DV-A4VX-01 18 33552717 33552717 C G C18orf21 Missense_Mutation p.A9G 0.29 deleterious(0.03) possibly_damaging(0.705) TCGA-DV-A4VX-01 18 48345972 48345972 G A MRO Silent p.G40G 0.37 TCGA-DV-A4VX-01 19 10464233 10464233 G T TYK2 Missense_Mutation p.L1000M 0.54 deleterious(0.02) probably_damaging(0.966) TCGA-DV-A4VX-01 19 13410042 13410042 C T CACNA1A Missense_Mutation p.R802H 0.50 probably_damaging(0.923) TCGA-DV-A4VX-01 19 14516692 14516692 A T CD97 Missense_Mutation p.I588F 0.34 deleterious(0) probably_damaging(0.949) TCGA-DV-A4VX-01 19 44496041 44496041 A C ZNF155 Missense_Mutation p.K75Q 0.36 tolerated(0.05) benign(0.126) TCGA-DV-A4VX-01 19 51961193 51961193 A C SIGLEC8 Missense_Mutation p.V150G 0.38 deleterious(0) probably_damaging(0.999) TCGA-DV-A4VX-01 19 5759136 5759136 G A CATSPERD Missense_Mutation p.D470N 0.42 tolerated(0.09) benign(0.132) TCGA-DV-A4VX-01 1 109466761 109466761 G A GPSM2 Silent p.S580S 0.32 TCGA-DV-A4VX-01 1 109801480 109801480 T A CELSR2 Missense_Mutation p.V1246E 0.30 deleterious(0.02) benign(0.01) TCGA-DV-A4VX-01 1 149906959 149906959 C G MTMR11 Missense_Mutation p.E130Q 0.27 deleterious(0.03) possibly_damaging(0.622) TCGA-DV-A4VX-01 1 152188348 152188348 T C HRNR Silent p.S1919S 0.17 TCGA-DV-A4VX-01 1 157771930 157771930 C T FCRL1 Missense_Mutation p.V221M 0.23 deleterious(0.03) probably_damaging(0.909) TCGA-DV-A4VX-01 1 16235962 16235962 C T SPEN Missense_Mutation p.P343L 0.27 probably_damaging(1) TCGA-DV-A4VX-01 1 17023372 17023372 G T ESPNP RNA 0.03 TCGA-DV-A4VX-01 1 180240729 180240729 G A LHX4 Intron 0.38 TCGA-DV-A4VX-01 1 196251439 196251439 T C KCNT2 Silent p.G915G 0.31 TCGA-DV-A4VX-01 1 204378685 204378685 A G PPP1R15B Missense_Mutation p.C619R 0.32 tolerated(0.11) possibly_damaging(0.463) TCGA-DV-A4VX-01 1 207135868 207135868 C A FCAMR Silent p.L114L 0.41 TCGA-DV-A4VX-01 1 2318940 2318940 C T MORN1 Silent p.L92L 0.37 TCGA-DV-A4VX-01 1 235971880 235971880 T G LYST Silent p.A746A 0.25 TCGA-DV-A4VX-01 1 27092945 27092945 C G ARID1A Intron 0.33 TCGA-DV-A4VX-01 1 43203898 43203898 A G CLDN19 Splice_Site p.X158_splice 0.42 TCGA-DV-A4VX-01 1 55319784 55319784 G A DHCR24 Missense_Mutation p.H382Y 0.35 deleterious(0.04) benign(0.411) TCGA-DV-A4VX-01 1 86430746 86430746 C G COL24A1 Splice_Site p.X822_splice 0.36 TCGA-DV-A4VX-01 20 35060515 35060515 G A DLGAP4 Missense_Mutation p.R132H 0.32 deleterious(0) probably_damaging(0.999) TCGA-DV-A4VX-01 20 35399447 35399447 C A DSN1 Missense_Mutation p.G62W 0.21 tolerated_low_confidence(0.18) benign(0.06) TCGA-DV-A4VX-01 20 43385609 43385609 C T RIMS4 Missense_Mutation p.R175H 0.05 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-DV-A4VX-01 20 61945523 61945523 A G COL20A1 Missense_Mutation p.S820G 0.28 tolerated(0.24) benign(0.387) TCGA-DV-A4VX-01 20 62608484 62608484 G C SAMD10 Nonsense_Mutation p.Y95* 0.48 TCGA-DV-A4VX-01 2 145147221 145147221 A T ZEB2 Missense_Mutation p.Y1148N 0.52 tolerated_low_confidence(0.15) benign(0.201) TCGA-DV-A4VX-01 2 154801143 154801143 G A GALNT13 Missense_Mutation p.A45T 0.19 tolerated(0.37) benign(0.056) TCGA-DV-A4VX-01 2 179319145 179319145 G A DFNB59 Missense_Mutation p.V100I 0.16 tolerated(0.26) possibly_damaging(0.757) TCGA-DV-A4VX-01 2 179497362 179497362 C T TTN Silent p.K14457K 0.22 TCGA-DV-A4VX-01 2 210704046 210704046 C G UNC80 Missense_Mutation p.Q1048E 0.28 benign(0.047) TCGA-DV-A4VX-01 2 38812840 38812840 T A HNRNPLL Silent p.G159G 0.29 TCGA-DV-A4VX-01 2 61724041 61724041 A - XPO1 Frame_Shift_Del p.F287Lfs*3 0.24 TCGA-DV-A4VX-01 2 67631191 67631191 A C ETAA1 Silent p.A459A 0.15 TCGA-DV-A4VX-01 3 10188250 10188250 C A VHL Missense_Mutation p.N131K 0.49 deleterious(0) probably_damaging(0.999) TCGA-DV-A4VX-01 3 111426807 111426807 A C PLCXD2 Missense_Mutation p.E66D 0.24 tolerated(0.15) probably_damaging(0.955) TCGA-DV-A4VX-01 3 11382142 11382142 G T ATG7 Nonsense_Mutation p.E305* 0.45 TCGA-DV-A4VX-01 3 160151453 160151453 A - SMC4 Frame_Shift_Del p.N1243Mfs*5 0.17 TCGA-DV-A4VX-01 3 47098386 47098387 AT - SETD2 Frame_Shift_Del p.Y2296Lfs*72 0.38 TCGA-DV-A4VX-01 3 98217473 98217473 T C OR5K2 Nonstop_Mutation p.*317Rext*4 0.29 TCGA-DV-A4VX-01 4 142053559 142053559 G A RNF150 Missense_Mutation p.A135V 0.42 deleterious(0.03) benign(0.228) TCGA-DV-A4VX-01 4 41986710 41986710 C T DCAF4L1 3'UTR 0.14 TCGA-DV-A4VX-01 4 68355834 68355834 C A CENPC Missense_Mutation p.V841L 0.33 tolerated(0.25) benign(0.01) TCGA-DV-A4VX-01 4 76439467 76439467 G A RCHY1 Silent p.A10A 0.35 TCGA-DV-A4VX-01 4 88029451 88029451 A G AFF1 Missense_Mutation p.E506G 0.38 deleterious(0.04) unknown(0) TCGA-DV-A4VX-01 4 89189451 89189451 C T PPM1K Missense_Mutation p.S248N 0.37 deleterious(0.03) possibly_damaging(0.886) TCGA-DV-A4VX-01 5 140594197 140594197 A G PCDHB13 Missense_Mutation p.I168V 0.27 tolerated_low_confidence(0.77) benign(0.005) TCGA-DV-A4VX-01 5 145239360 145239360 C A GRXCR2 Missense_Mutation p.R228L 0.50 deleterious(0.01) probably_damaging(0.987) TCGA-DV-A4VX-01 5 176821170 176821170 A G SLC34A1 Missense_Mutation p.K383R 0.19 tolerated(0.29) benign(0.005) TCGA-DV-A4VX-01 5 21854831 21854831 C T CDH12 Missense_Mutation p.V199I 0.09 tolerated(0.09) benign(0.214) TCGA-DV-A4VX-01 5 24593514 24593514 G A CDH10 Missense_Mutation p.T29M 0.32 deleterious(0.03) benign(0.132) TCGA-DV-A4VX-01 5 39202695 39202696 - C FYB Frame_Shift_Ins p.E133Gfs*25 0.38 TCGA-DV-A4VX-01 5 40852279 40852280 - A CARD6 Frame_Shift_Ins p.V285Gfs*3 0.42 TCGA-DV-A4VX-01 6 128150833 128150833 G A THEMIS Missense_Mutation p.P166L 0.33 deleterious(0.03) possibly_damaging(0.905) TCGA-DV-A4VX-01 6 17629143 17629143 G A NUP153 Missense_Mutation p.S1096L 0.32 deleterious(0) benign(0.06) TCGA-DV-A4VX-01 6 22292805 22292805 C A PRL Missense_Mutation p.A92S 0.38 tolerated(0.71) benign(0.005) TCGA-DV-A4VX-01 6 34802599 34802599 T C UHRF1BP1 Silent p.I210I 0.36 TCGA-DV-A4VX-01 6 87966836 87966837 - T ZNF292 Frame_Shift_Ins p.S1164Ffs*57 0.18 TCGA-DV-A4VX-01 7 11022574 11022574 G T PHF14 Nonsense_Mutation p.E230* 0.26 TCGA-DV-A4VX-01 7 137531273 137531273 C T DGKI Silent p.K112K 0.38 TCGA-DV-A4VX-01 7 157926447 157926447 T A PTPRN2 Missense_Mutation p.E493V 0.10 tolerated(0.2) benign(0.002) TCGA-DV-A4VX-01 7 39610093 39610116 ACTTATTTTTAGGAAGGTTATAGA - YAE1D1 Splice_Site p.X44_splice 0.22 TCGA-DV-A4VX-01 7 86815213 86815213 G C DMTF1 Missense_Mutation p.S373T 0.47 deleterious(0.01) possibly_damaging(0.69) TCGA-DV-A4VX-01 7 97821070 97821070 G A LMTK2 Silent p.P431P 0.20 TCGA-DV-A4VX-01 8 124033690 124033690 C - DERL1 Frame_Shift_Del p.G168Afs*3 0.13 TCGA-DV-A4VX-01 8 133816183 133816183 T G PHF20L1 Missense_Mutation p.F209L 0.24 tolerated(0.35) benign(0.003) TCGA-DV-A4VX-01 8 99787006 99787006 G A STK3 Missense_Mutation p.P51L 0.17 deleterious(0) probably_damaging(0.992) TCGA-DV-A4VX-01 9 134458071 134458071 T C RAPGEF1 Missense_Mutation p.T977A 0.28 tolerated(0.49) benign(0.122) TCGA-DV-A4VX-01 9 137694750 137694750 C T COL5A1 Missense_Mutation p.T1008M 0.44 unknown(0) TCGA-DV-A4VX-01 9 91994019 91994019 G T SEMA4D Missense_Mutation p.S730Y 0.33 tolerated(0.26) probably_damaging(0.927) TCGA-DV-A4VX-01 X 100275562 100275566 GAGAG - TRMT2B Frame_Shift_Del p.L360Sfs*12 0.63 TCGA-DV-A4VX-01 X 107807142 107807142 C A COL4A5 Missense_Mutation p.P88T 0.72 unknown(0) TCGA-DV-A4VX-01 X 45013333 45013333 T A CXorf36 Silent p.P261P 0.08 TCGA-DV-A4VX-01 X 53240997 53240998 - TAA KDM5C In_Frame_Ins p.F404_K405insI 0.61 TCGA-DV-A4VZ-01 16 88599224 88599226 CCA - ZFPM1 In_Frame_Del p.T359del 0.39 TCGA-DV-A4VZ-01 17 10419297 10419297 C A MYH1 Missense_Mutation p.A151S 0.37 deleterious(0.03) probably_damaging(0.973) TCGA-DV-A4VZ-01 1 149783687 149783687 G A HIST2H2BF Silent p.N64N 0.43 TCGA-DV-A4VZ-01 1 152281669 152281669 G A FLG Missense_Mutation p.S1898L 0.36 possibly_damaging(0.651) TCGA-DV-A4VZ-01 20 25259029 25259029 C T PYGB Silent p.R310R 0.35 TCGA-DV-A4VZ-01 2 179431224 179431224 G A TTN Silent p.V26545V 0.27 TCGA-DV-A4VZ-01 2 46987512 46987512 A G SOCS5 3'UTR 0.35 TCGA-DV-A4VZ-01 2 74593421 74593421 C T DCTN1 Missense_Mutation p.A904T 0.39 deleterious(0.01) possibly_damaging(0.643) TCGA-DV-A4VZ-01 3 161220152 161220152 C T OTOL1 Missense_Mutation p.A171V 0.31 tolerated(0.07) unknown(0) TCGA-DV-A4VZ-01 4 169815905 169815905 T G PALLD Intron 0.33 TCGA-DV-A4VZ-01 4 55964955 55964955 G C KDR Missense_Mutation p.T761R 0.36 deleterious(0.05) probably_damaging(0.928) TCGA-DV-A4VZ-01 5 24537755 24537755 C T CDH10 Missense_Mutation p.G87E 0.31 deleterious(0.04) benign(0.022) TCGA-DV-A4VZ-01 6 29012373 29012373 T C OR2W1 Missense_Mutation p.T194A 0.36 tolerated(0.6) benign(0.004) TCGA-DV-A4VZ-01 7 139724596 139724596 C T PARP12 Missense_Mutation p.V624M 0.41 deleterious(0) probably_damaging(0.998) TCGA-DV-A4VZ-01 7 139724638 139724638 A G PARP12 Missense_Mutation p.S610P 0.39 tolerated(0.14) benign(0.012) TCGA-DV-A4VZ-01 7 47854937 47854937 C A PKD1L1 Missense_Mutation p.A2362S 0.55 tolerated(0.32) benign(0.028) TCGA-DV-A4VZ-01 9 101747902 101747902 C A COL15A1 Silent p.P52P 0.39 TCGA-DV-A4VZ-01 9 135513573 135513573 C G DDX31 Intron 0.42 TCGA-DV-A4W0-01 10 126370856 126370856 T A FAM53B Missense_Mutation p.S76C 0.22 deleterious(0) possibly_damaging(0.694) TCGA-DV-A4W0-01 10 50315790 50315790 C T VSTM4 Silent p.L102L 0.39 TCGA-DV-A4W0-01 10 76994447 76994447 G A COMTD1 Missense_Mutation p.A186V 0.08 deleterious(0) probably_damaging(1) TCGA-DV-A4W0-01 11 117279741 117279741 A G CEP164 Missense_Mutation p.R1249G 0.29 tolerated(0.32) benign(0.001) TCGA-DV-A4W0-01 11 121385011 121385011 G A SORL1 Missense_Mutation p.G398S 0.04 tolerated(0.16) possibly_damaging(0.738) TCGA-DV-A4W0-01 11 35496210 35496210 A C PAMR1 Missense_Mutation p.I154M 0.30 deleterious(0) probably_damaging(0.965) TCGA-DV-A4W0-01 11 47365154 47365154 G A MYBPC3 Missense_Mutation p.P371L 0.35 deleterious(0) probably_damaging(0.975) TCGA-DV-A4W0-01 11 65412570 65412570 G T SIPA1 Nonsense_Mutation p.E377* 0.30 TCGA-DV-A4W0-01 11 89880580 89880580 T G NAALAD2 Missense_Mutation p.F93V 0.32 tolerated(0.22) possibly_damaging(0.852) TCGA-DV-A4W0-01 12 110956715 110956715 A T RAD9B Missense_Mutation p.I247L 0.28 tolerated(0.11) benign(0.02) TCGA-DV-A4W0-01 12 110956716 110956716 T G RAD9B Missense_Mutation p.I247R 0.22 deleterious(0) possibly_damaging(0.864) TCGA-DV-A4W0-01 12 50848124 50848124 A - LARP4 Frame_Shift_Del p.N349Mfs*16 0.09 TCGA-DV-A4W0-01 12 8906563 8906563 C A RIMKLB Missense_Mutation p.L191M 0.28 tolerated(0.12) possibly_damaging(0.812) TCGA-DV-A4W0-01 13 51953609 51953609 G A INTS6 Silent p.L459L 0.17 TCGA-DV-A4W0-01 13 51953616 51953616 G T INTS6 Silent p.L456L 0.16 TCGA-DV-A4W0-01 15 44965468 44965468 G A PATL2 Silent p.F137F 0.31 TCGA-DV-A4W0-01 15 83431002 83431002 G C FSD2 Missense_Mutation p.P617A 0.28 deleterious(0.01) possibly_damaging(0.786) TCGA-DV-A4W0-01 16 20994050 20994050 G T DNAH3 Silent p.R2618R 0.13 TCGA-DV-A4W0-01 16 23702170 23702170 A T ERN2 Silent p.P969P 0.22 TCGA-DV-A4W0-01 16 28109961 28109961 C T XPO6 Splice_Site p.X1093_splice 0.23 TCGA-DV-A4W0-01 16 53265370 53265370 G C CHD9 Missense_Mutation p.D776H 0.15 probably_damaging(0.994) TCGA-DV-A4W0-01 16 55362818 55362818 G A IRX6 Missense_Mutation p.G310S 0.24 tolerated(0.67) benign(0.015) TCGA-DV-A4W0-01 16 75668103 75668103 A G KARS Missense_Mutation p.Y323H 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-DV-A4W0-01 16 820588 820588 C T MSLNL Missense_Mutation p.A880T 0.80 benign(0.115) TCGA-DV-A4W0-01 16 83998724 83998724 C T OSGIN1 Silent p.Y182Y 0.18 TCGA-DV-A4W0-01 16 9928047 9928047 C T GRIN2A Missense_Mutation p.M564I 0.24 deleterious(0.02) benign(0.023) TCGA-DV-A4W0-01 17 11520890 11520890 G A DNAH9 Missense_Mutation p.G356E 0.38 benign(0.014) TCGA-DV-A4W0-01 17 11607561 11607561 G T DNAH9 Silent p.V1731V 0.20 TCGA-DV-A4W0-01 17 11775069 11775069 A T DNAH9 Missense_Mutation p.D3403V 0.30 benign(0.155) TCGA-DV-A4W0-01 17 42289768 42289768 C - UBTF Frame_Shift_Del p.D239Tfs*5 0.21 TCGA-DV-A4W0-01 17 60678013 60678013 T A TLK2 Missense_Mutation p.F518I 0.25 deleterious(0) probably_damaging(0.997) TCGA-DV-A4W0-01 17 6609987 6609987 G C SLC13A5 Silent p.L114L 0.29 TCGA-DV-A4W0-01 17 73739824 73739824 A C ITGB4 Missense_Mutation p.E998A 0.34 tolerated(0.85) benign(0.093) TCGA-DV-A4W0-01 17 74152294 74152294 C T RNF157 Missense_Mutation p.E508K 0.38 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-DV-A4W0-01 17 79205347 79205347 G A ENTHD2 Intron 0.31 TCGA-DV-A4W0-01 17 80574484 80574484 A - WDR45B Frame_Shift_Del p.S282Pfs*56 0.22 TCGA-DV-A4W0-01 18 15316663 15316664 TA - RNU6-721P 3'Flank 0.21 TCGA-DV-A4W0-01 19 1105507 1105507 C T GPX4 Nonsense_Mutation p.Q108* 0.36 TCGA-DV-A4W0-01 19 11352215 11352215 G A C19orf80 Missense_Mutation p.R185Q 0.22 tolerated(0.17) benign(0.071) TCGA-DV-A4W0-01 19 11552151 11552151 G C PRKCSH Missense_Mutation p.K149N 0.27 tolerated(0.12) possibly_damaging(0.456) TCGA-DV-A4W0-01 19 18322001 18322001 G A PDE4C Missense_Mutation p.T626M 0.30 deleterious(0.02) probably_damaging(1) TCGA-DV-A4W0-01 19 39062778 39062778 C T RYR1 Silent p.G4622G 0.23 TCGA-DV-A4W0-01 19 57839075 57839075 A - ZNF543 Frame_Shift_Del p.D82Afs*27 0.20 TCGA-DV-A4W0-01 1 100349906 100349907 - A AGL Frame_Shift_Ins p.I817Nfs*3 0.19 TCGA-DV-A4W0-01 1 117516878 117516878 A G PTGFRN Silent p.S700S 0.35 TCGA-DV-A4W0-01 1 1386087 1386087 G T ATAD3C Silent p.L8L 0.25 TCGA-DV-A4W0-01 1 155699026 155699026 G T DAP3 Missense_Mutation p.D238Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-DV-A4W0-01 1 182844045 182844045 A - DHX9 Frame_Shift_Del p.K592Rfs*19 0.22 TCGA-DV-A4W0-01 1 24201701 24201701 C T CNR2 Missense_Mutation p.R136H 0.31 tolerated(1) benign(0.002) TCGA-DV-A4W0-01 1 27087420 27087420 G C ARID1A Missense_Mutation p.G665A 0.24 unknown(0) TCGA-DV-A4W0-01 1 46032688 46032688 T A AKR1A1 Missense_Mutation p.F118I 0.28 deleterious(0) possibly_damaging(0.641) TCGA-DV-A4W0-01 1 52881036 52881036 A T PRPF38A Missense_Mutation p.S292C 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-DV-A4W0-01 20 41101038 41101038 C A PTPRT Missense_Mutation p.V440F 0.31 tolerated(0.09) benign(0.019) TCGA-DV-A4W0-01 20 62324160 62324160 G A RTEL1 Silent p.E909E 0.28 TCGA-DV-A4W0-01 21 33340579 33340579 C T HUNK Missense_Mutation p.R298C 0.19 deleterious(0) probably_damaging(0.977) TCGA-DV-A4W0-01 21 45878145 45878145 C T LRRC3 3'UTR 0.24 TCGA-DV-A4W0-01 22 24107632 24107632 C T C22orf15 Intron 0.27 TCGA-DV-A4W0-01 2 132277723 132277723 C T AC093838.4 RNA 0.24 TCGA-DV-A4W0-01 2 162760532 162760532 T A SLC4A10 Silent p.I487I 0.20 TCGA-DV-A4W0-01 2 190922016 190922016 C A MSTN Missense_Mutation p.A366S 0.37 tolerated(0.88) benign(0.003) TCGA-DV-A4W0-01 2 198266711 198266711 T C SF3B1 Missense_Mutation p.K741E 0.36 deleterious(0) probably_damaging(0.987) TCGA-DV-A4W0-01 2 220405192 220405192 A T CHPF Missense_Mutation p.L414Q 0.24 deleterious(0) probably_damaging(0.98) TCGA-DV-A4W0-01 2 39222445 39222445 A - SOS1 Frame_Shift_Del p.L1056Cfs*32 0.24 TCGA-DV-A4W0-01 2 86332858 86332858 G T POLR1A Silent p.G14G 0.25 TCGA-DV-A4W0-01 3 52437795 52437795 G A BAP1 Nonsense_Mutation p.Q456* 0.29 TCGA-DV-A4W0-01 3 52621464 52621464 G A PBRM1 Intron 0.19 TCGA-DV-A4W0-01 4 16504353 16504353 C T LDB2 Silent p.A345A 0.04 TCGA-DV-A4W0-01 4 187558056 187558056 C A FAT1 Missense_Mutation p.D1219Y 0.26 probably_damaging(0.997) TCGA-DV-A4W0-01 5 127674632 127674632 G C FBN2 Missense_Mutation p.N1155K 0.18 tolerated(0.05) possibly_damaging(0.771) TCGA-DV-A4W0-01 5 127674645 127674645 A G FBN2 Missense_Mutation p.M1151T 0.37 deleterious(0.01) possibly_damaging(0.811) TCGA-DV-A4W0-01 5 74072602 74072602 A G NSA2 3'UTR 0.18 TCGA-DV-A4W0-01 5 96139633 96139633 C T ERAP1 5'UTR 0.06 TCGA-DV-A4W0-01 6 129609142 129609142 G A LAMA2 Silent p.R896R 0.27 TCGA-DV-A4W0-01 6 159204689 159204692 AGCA - EZR Frame_Shift_Del p.N186Kfs*6 0.27 TCGA-DV-A4W0-01 6 30522663 30522663 T A GNL1 Missense_Mutation p.S136C 0.05 deleterious(0.01) benign(0.438) TCGA-DV-A4W0-01 7 133749109 133749109 T A EXOC4 Missense_Mutation p.V918E 0.27 tolerated(0.07) benign(0.244) TCGA-DV-A4W0-01 7 141765192 141765192 C A MGAM Silent p.P1514P 0.33 TCGA-DV-A4W0-01 7 25268023 25268023 C A NPVF Missense_Mutation p.L12F 0.27 tolerated(0.44) possibly_damaging(0.822) TCGA-DV-A4W0-01 7 39472829 39472829 C T POU6F2 Missense_Mutation p.P394S 0.27 deleterious(0.03) unknown(0) TCGA-DV-A4W0-01 7 44572924 44572924 C T NPC1L1 Intron 0.26 TCGA-DV-A4W0-01 7 63982448 63982448 A T ZNF680 Missense_Mutation p.H228Q 0.21 deleterious(0.01) possibly_damaging(0.712) TCGA-DV-A4W0-01 8 124121816 124121816 G A TBC1D31 Silent p.K464K 0.16 TCGA-DV-A4W0-01 8 125499107 125499107 T - RNF139 Frame_Shift_Del p.L406Pfs*11 0.18 TCGA-DV-A4W0-01 8 28747426 28747426 G T INTS9 5'UTR 0.25 TCGA-DV-A4W0-01 9 136905177 136905177 T A BRD3 Missense_Mutation p.N541I 0.33 deleterious(0.04) benign(0.193) TCGA-DV-A4W0-01 X 150912029 150912029 T C CNGA2 Missense_Mutation p.F352L 0.61 deleterious(0) probably_damaging(0.998) TCGA-DV-A4W0-01 X 46359369 46359369 G A ZNF674 Missense_Mutation p.P552L 0.08 deleterious(0) probably_damaging(1) TCGA-EU-5904-01 10 26789847 26789847 A T APBB1IP Missense_Mutation p.K87I 0.21 tolerated(0.1) probably_damaging(0.921) TCGA-EU-5904-01 10 33619643 33619643 C A NRP1 Missense_Mutation p.D81Y 0.28 deleterious(0) probably_damaging(0.956) TCGA-EU-5904-01 10 409240 409240 A T DIP2C Missense_Mutation p.F830Y 0.17 deleterious(0) probably_damaging(0.952) TCGA-EU-5904-01 11 121175086 121175086 A T SC5D Missense_Mutation p.E76V 0.35 deleterious(0) probably_damaging(1) TCGA-EU-5904-01 12 58190297 58190297 G A TSFM Silent p.Q324Q 0.30 TCGA-EU-5904-01 12 80182470 80182471 - T PPP1R12A Nonsense_Mutation p.Y920* 0.19 TCGA-EU-5904-01 12 9144837 9144837 G A KLRG1 Missense_Mutation p.A40T 0.15 tolerated(0.17) benign(0.028) TCGA-EU-5904-01 13 109817265 109817265 G A MYO16 Missense_Mutation p.M1705I 0.47 tolerated_low_confidence(0.35) benign(0.006) TCGA-EU-5904-01 13 49086880 49086880 T C RCBTB2 Silent p.L167L 0.20 TCGA-EU-5904-01 14 23344975 23344975 C G LRP10 Missense_Mutation p.A273G 0.28 deleterious(0.05) benign(0.243) TCGA-EU-5904-01 14 75515759 75515759 C G MLH3 Missense_Mutation p.Q200H 0.16 deleterious(0.01) possibly_damaging(0.815) TCGA-EU-5904-01 14 94741786 94741786 C T PPP4R4 Missense_Mutation p.S842F 0.28 tolerated_low_confidence(0.09) probably_damaging(0.929) TCGA-EU-5904-01 15 23335621 23335621 C T HERC2P2 RNA 0.12 TCGA-EU-5904-01 15 81172060 81172060 A G KIAA1199 Missense_Mutation p.K82R 0.22 tolerated(0.57) benign(0.11) TCGA-EU-5904-01 16 3658538 3658538 A T SLX4 Missense_Mutation p.V143E 0.22 deleterious(0.02) possibly_damaging(0.77) TCGA-EU-5904-01 16 4867698 4867698 C - GLYR1 Frame_Shift_Del p.I270* 0.20 TCGA-EU-5904-01 16 69199341 69199341 C G CIRH1A Missense_Mutation p.P582R 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-EU-5904-01 17 10355565 10355565 G A MYH4 Missense_Mutation p.S1144F 0.05 deleterious(0) benign(0.073) TCGA-EU-5904-01 17 26961748 26961748 G C KIAA0100 Missense_Mutation p.L953V 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-EU-5904-01 17 30536513 30536513 C A RHOT1 Intron 0.27 TCGA-EU-5904-01 17 39122754 39122754 G A KRT39 Nonsense_Mutation p.R119* 0.05 TCGA-EU-5904-01 18 18535179 18535179 G A ROCK1 Silent p.T1180T 0.19 TCGA-EU-5904-01 18 40857247 40857247 T A SYT4 5'UTR 0.25 TCGA-EU-5904-01 19 17865951 17865951 G C FCHO1 5'UTR 0.17 TCGA-EU-5904-01 19 36046491 36046491 C G ATP4A Missense_Mutation p.D670H 0.26 deleterious(0.02) possibly_damaging(0.543) TCGA-EU-5904-01 19 41078059 41078059 C A SPTBN4 Missense_Mutation p.A2485D 0.04 deleterious(0) possibly_damaging(0.887) TCGA-EU-5904-01 19 53472545 53472545 G A ZNF702P RNA 0.40 TCGA-EU-5904-01 1 10425659 10425659 G C KIF1B Missense_Mutation p.G1523R 0.34 tolerated(0.5) benign(0) TCGA-EU-5904-01 1 13933693 13933693 C G PDPN Missense_Mutation p.D107E 0.05 tolerated(0.34) benign(0.107) TCGA-EU-5904-01 1 159410089 159410089 G T OR10J1 Missense_Mutation p.A181S 0.08 tolerated(0.81) benign(0.026) TCGA-EU-5904-01 1 186277944 186277944 C G PRG4 Silent p.P1031P 0.20 TCGA-EU-5904-01 1 205238192 205238192 G A TMCC2 Missense_Mutation p.A288T 0.29 tolerated(0.06) possibly_damaging(0.846) TCGA-EU-5904-01 1 231487063 231487063 T G SPRTN Missense_Mutation p.F155C 0.26 deleterious(0) probably_damaging(0.999) TCGA-EU-5904-01 20 3677349 3677349 G A SIGLEC1 Missense_Mutation p.A856V 0.05 tolerated(0.05) benign(0.104) TCGA-EU-5904-01 20 55100886 55100886 C T FAM209A Silent p.G92G 0.03 TCGA-EU-5904-01 22 17119476 17119476 G A TPTEP1 RNA 0.12 TCGA-EU-5904-01 22 18609612 18609612 C A TUBA8 Silent p.A289A 0.23 TCGA-EU-5904-01 22 21115600 21115600 T C PI4KA Missense_Mutation p.D928G 0.25 deleterious(0) probably_damaging(0.948) TCGA-EU-5904-01 22 50656996 50656996 G A TUBGCP6 Silent p.S1625S 0.06 TCGA-EU-5904-01 2 109099526 109099526 C T GCC2 Silent p.A1118A 0.26 TCGA-EU-5904-01 2 168105254 168105254 C A XIRP2 Nonsense_Mutation p.S2451* 0.08 TCGA-EU-5904-01 2 179474976 179474988 TTCTCCTCCCAGC - TTN Frame_Shift_Del p.A17089Hfs*16 0.21 TCGA-EU-5904-01 2 182396472 182396472 A G ITGA4 Missense_Mutation p.Q918R 0.22 tolerated(0.39) benign(0.28) TCGA-EU-5904-01 2 56419911 56419911 C T CCDC85A Silent p.S192S 0.22 TCGA-EU-5904-01 3 189586470 189586470 C T TP63 Missense_Mutation p.S365L 0.22 tolerated(0.36) benign(0.005) TCGA-EU-5904-01 3 49059963 49059963 C A NDUFAF3 Missense_Mutation p.Q88K 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-EU-5904-01 4 16165153 16165153 G T TAPT1 Silent p.S494S 0.24 TCGA-EU-5904-01 4 17819025 17819026 - AA NCAPG Frame_Shift_Ins p.I307Kfs*2 0.21 TCGA-EU-5904-01 4 8583134 8583134 T A GPR78 Missense_Mutation p.L142H 0.20 deleterious(0.05) probably_damaging(0.972) TCGA-EU-5904-01 5 140745223 140745223 A G PCDHGA5 Silent p.V442V 0.42 TCGA-EU-5904-01 6 24528317 24528317 T C ALDH5A1 Silent p.P435P 0.30 TCGA-EU-5904-01 7 138602172 138602172 T C KIAA1549 Missense_Mutation p.T734A 0.05 tolerated(0.23) benign(0.002) TCGA-EU-5904-01 9 140671279 140671279 C T EHMT1 Silent p.A667A 0.17 TCGA-EU-5904-01 9 17416024 17416024 T A CNTLN Nonsense_Mutation p.L984* 0.24 TCGA-EU-5904-01 X 128895243 128895243 G T XPNPEP2 Missense_Mutation p.V532L 0.21 deleterious(0) probably_damaging(0.994) TCGA-EU-5904-01 X 152860113 152860113 G C FAM58A Silent p.P105P 0.20 TCGA-EU-5905-01 10 121567515 121567515 G C INPP5F Missense_Mutation p.M504I 0.38 tolerated(0.09) benign(0.025) TCGA-EU-5905-01 10 97917981 97917981 A C ZNF518A RNA 0.27 TCGA-EU-5905-01 11 124623594 124623594 C A ESAM Missense_Mutation p.G374V 0.16 deleterious(0) probably_damaging(0.988) TCGA-EU-5905-01 12 120805861 120805861 C G MSI1 Missense_Mutation p.G73R 0.27 tolerated(0.11) benign(0.115) TCGA-EU-5905-01 12 122354264 122354264 A G PSMD9 3'UTR 0.51 TCGA-EU-5905-01 12 52940112 52940112 T A KRT71 Missense_Mutation p.E428V 0.25 deleterious(0) probably_damaging(1) TCGA-EU-5905-01 12 81536908 81536908 G A ACSS3 Missense_Mutation p.G268D 0.49 tolerated(0.09) benign(0.032) TCGA-EU-5905-01 14 106054581 106054581 C G IGHA2 Missense_Mutation p.R51T 0.23 tolerated(0.76) benign(0.003) TCGA-EU-5905-01 14 24709719 24709719 C G TINF2 Missense_Mutation p.A323P 0.26 tolerated_low_confidence(0.08) possibly_damaging(0.82) TCGA-EU-5905-01 16 31090216 31090216 T A ZNF646 Missense_Mutation p.F857L 0.24 deleterious(0.01) probably_damaging(0.971) TCGA-EU-5905-01 16 31201624 31201624 T C FUS Silent p.G399G 0.45 TCGA-EU-5905-01 16 49670001 49670001 C T ZNF423 Missense_Mutation p.R1021H 0.31 deleterious(0) probably_damaging(0.948) TCGA-EU-5905-01 17 31618462 31618463 - T ASIC2 Nonsense_Mutation p.Y224* 0.38 TCGA-EU-5905-01 17 3563891 3563891 C G CTNS Intron 0.11 TCGA-EU-5905-01 17 3563892 3563892 G A CTNS Intron 0.11 TCGA-EU-5905-01 17 44590511 44590511 G A LRRC37A2 Missense_Mutation p.V145I 0.26 tolerated(0.09) possibly_damaging(0.785) TCGA-EU-5905-01 17 66525084 66525084 G C PRKAR1A Missense_Mutation p.K281N 0.41 tolerated(0.49) benign(0.01) TCGA-EU-5905-01 17 79477756 79477756 T C ACTG1 Missense_Mutation p.D363G 0.18 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EU-5905-01 19 13084386 13084386 C G DAND5 Missense_Mutation p.R170G 0.24 tolerated(0.25) possibly_damaging(0.814) TCGA-EU-5905-01 19 17212688 17212688 G A MYO9B Missense_Mutation p.S54N 0.25 tolerated(0.25) benign(0.008) TCGA-EU-5905-01 19 38948875 38948875 A G RYR1 Missense_Mutation p.N704D 0.28 probably_damaging(0.994) TCGA-EU-5905-01 19 40222118 40222118 T A CLC Missense_Mutation p.T111S 0.03 tolerated(0.97) benign(0.004) TCGA-EU-5905-01 19 4704158 4704158 G A DPP9 Silent p.G195G 0.26 TCGA-EU-5905-01 1 150981137 150981138 - TGCT PRUNE Frame_Shift_Ins p.L12Cfs*15 0.22 TCGA-EU-5905-01 1 161166010 161166010 A T ADAMTS4 Silent p.I347I 0.24 TCGA-EU-5905-01 1 25824819 25824819 C A TMEM57 Silent p.A619A 0.05 TCGA-EU-5905-01 1 28785764 28785764 C A PHACTR4 Nonsense_Mutation p.S72* 0.21 TCGA-EU-5905-01 1 35579780 35579780 A T ZMYM1 Missense_Mutation p.E783D 0.17 deleterious(0) probably_damaging(0.996) TCGA-EU-5905-01 1 40211124 40211124 C T PPIE Silent p.G154G 0.07 TCGA-EU-5905-01 1 89525013 89525013 T C GBP1 Missense_Mutation p.M139V 0.33 deleterious(0.02) benign(0.077) TCGA-EU-5905-01 1 92554272 92554272 T G BTBD8 Missense_Mutation p.F56C 0.23 deleterious(0.04) possibly_damaging(0.447) TCGA-EU-5905-01 20 18125954 18125954 G T CSRP2BP Missense_Mutation p.G113C 0.27 deleterious(0) probably_damaging(0.935) TCGA-EU-5905-01 20 60701436 60701436 A G LSM14B Missense_Mutation p.Y123C 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EU-5905-01 20 61300316 61300316 G T SLCO4A1 Silent p.V637V 0.33 TCGA-EU-5905-01 20 62050979 62050979 G A KCNQ2 Missense_Mutation p.R432C 0.20 deleterious(0.04) benign(0.118) TCGA-EU-5905-01 21 32624302 32624302 C A TIAM1 Silent p.R389R 0.22 TCGA-EU-5905-01 21 32624303 32624303 C A TIAM1 Missense_Mutation p.R389L 0.22 deleterious(0) possibly_damaging(0.641) TCGA-EU-5905-01 21 34120909 34120909 T C PAXBP1 Silent p.K608K 0.44 TCGA-EU-5905-01 21 47705106 47705106 C A MCM3AP Missense_Mutation p.R32L 0.22 tolerated(0.36) benign(0.252) TCGA-EU-5905-01 22 41609749 41609749 C A L3MBTL2 Intron 0.25 TCGA-EU-5905-01 2 164466509 164466509 C G FIGN Missense_Mutation p.M611I 0.39 tolerated(0.49) benign(0.003) TCGA-EU-5905-01 2 62104113 62104114 - T CCT4 Frame_Shift_Ins p.R240Kfs*3 0.16 TCGA-EU-5905-01 2 71361869 71361870 TA C MPHOSPH10 Frame_Shift_Del p.L347Sfs*3 0.33 TCGA-EU-5905-01 3 10188260 10188260 T - VHL Frame_Shift_Del p.L135Yfs*24 0.36 TCGA-EU-5905-01 3 126142411 126142411 C A CCDC37 Missense_Mutation p.L404M 0.74 deleterious(0.01) probably_damaging(0.997) TCGA-EU-5905-01 3 136170989 136170989 C T STAG1 Silent p.K438K 0.21 TCGA-EU-5905-01 3 38519652 38519652 A G ACVR2B Missense_Mutation p.T131A 0.56 tolerated(0.74) benign(0) TCGA-EU-5905-01 3 69168594 69168595 - T LMOD3 Frame_Shift_Ins p.N304Kfs*5 0.35 TCGA-EU-5905-01 4 89628115 89628115 T A HERC3 3'UTR 0.27 TCGA-EU-5905-01 5 141248528 141248528 G T PCDH1 Nonsense_Mutation p.S170* 0.16 TCGA-EU-5905-01 5 141248529 141248529 A T PCDH1 Missense_Mutation p.S170T 0.17 tolerated(0.06) benign(0.431) TCGA-EU-5905-01 5 32059357 32059357 G T PDZD2 Missense_Mutation p.G738V 0.42 deleterious(0) probably_damaging(1) TCGA-EU-5905-01 5 442986 442986 T A C5orf55 5'UTR 0.13 TCGA-EU-5905-01 5 55056036 55056036 G A DDX4 Missense_Mutation p.D46N 0.24 tolerated_low_confidence(0.29) benign(0.187) TCGA-EU-5905-01 5 77298669 77298669 A G AP3B1 3'UTR 0.56 TCGA-EU-5905-01 6 134494169 134494169 C G SGK1 Missense_Mutation p.G276R 0.27 deleterious(0) probably_damaging(1) TCGA-EU-5905-01 6 135516962 135516962 G A MYB Missense_Mutation p.S342N 0.38 tolerated(0.15) benign(0.004) TCGA-EU-5905-01 6 136597333 136597333 G T BCLAF1 Missense_Mutation p.L444M 0.14 tolerated(0.25) possibly_damaging(0.82) TCGA-EU-5905-01 6 146865253 146865253 C T RAB32 Silent p.I82I 0.46 TCGA-EU-5905-01 6 33384503 33384503 T C CUTA Missense_Mutation p.Q174R 0.25 deleterious(0.04) possibly_damaging(0.851) TCGA-EU-5905-01 6 42929965 42929969 GCTGG - GNMT Frame_Shift_Del p.M74Ifs*14 0.12 TCGA-EU-5905-01 6 51882422 51882423 - G PKHD1 Frame_Shift_Ins p.A1797Gfs*9 0.19 TCGA-EU-5905-01 7 71175760 71175760 C A WBSCR17 Silent p.T505T 0.24 TCGA-EU-5905-01 7 95750406 95750406 T C SLC25A13 3'UTR 0.37 TCGA-EU-5905-01 8 103327008 103327008 C T UBR5 Missense_Mutation p.A620T 0.23 tolerated(1) benign(0) TCGA-EU-5905-01 8 133492523 133492523 C G KCNQ3 Missense_Mutation p.G86A 0.33 deleterious(0.04) probably_damaging(0.996) TCGA-EU-5905-01 8 28625776 28625776 C G INTS9 Missense_Mutation p.A622P 0.25 tolerated(0.06) benign(0.167) TCGA-EU-5905-01 8 8175907 8175907 C A SGK223 Missense_Mutation p.W1326C 0.32 probably_damaging(0.994) TCGA-EU-5905-01 8 87568470 87568470 G C CPNE3 Missense_Mutation p.E465D 0.31 tolerated(0.06) probably_damaging(0.997) TCGA-EU-5905-01 9 130206351 130206351 T C ZNF79 Silent p.S124S 0.23 TCGA-EU-5905-01 9 139250844 139250844 A T GPSM1 Missense_Mutation p.I555F 0.25 deleterious(0) probably_damaging(1) TCGA-EU-5905-01 9 140099456 140099456 C A TMEM203 Nonstop_Mutation p.*137Yext*13 0.33 TCGA-EU-5905-01 X 135638638 135638638 A T VGLL1 Missense_Mutation p.K239N 0.17 tolerated_low_confidence(0.43) benign(0.018) TCGA-EU-5905-01 X 50054338 50054338 C A CCNB3 Missense_Mutation p.P1057T 0.13 deleterious(0.04) possibly_damaging(0.641) TCGA-EU-5906-01 10 135347393 135347393 A C CYP2E1 Missense_Mutation p.E320A 0.25 deleterious(0.02) possibly_damaging(0.827) TCGA-EU-5906-01 10 60124536 60124536 T A UBE2D1 Silent p.A68A 0.22 TCGA-EU-5906-01 10 61835232 61835232 A G ANK3 Missense_Mutation p.S1803P 0.27 probably_damaging(0.969) TCGA-EU-5906-01 11 3797242 3797242 G A NUP98 Missense_Mutation p.T122I 0.27 deleterious(0) possibly_damaging(0.474) TCGA-EU-5906-01 11 55062928 55062928 A T TRIM51HP Intron 0.07 TCGA-EU-5906-01 11 57117325 57117325 G A P2RX3 Missense_Mutation p.D220N 0.14 tolerated(0.11) probably_damaging(0.999) TCGA-EU-5906-01 11 67789230 67789230 C G ALDH3B1 Missense_Mutation p.P279R 0.18 tolerated(0.07) possibly_damaging(0.657) TCGA-EU-5906-01 12 123187634 123187634 A T HCAR2 Missense_Mutation p.L66Q 0.26 deleterious(0) probably_damaging(1) TCGA-EU-5906-01 12 123187635 123187635 G A HCAR2 Silent p.L66L 0.26 TCGA-EU-5906-01 12 133354283 133354283 G T GOLGA3 Missense_Mutation p.Q1231K 0.19 tolerated(0.29) benign(0.292) TCGA-EU-5906-01 12 32977004 32977004 A T PKP2 Missense_Mutation p.I594N 0.05 deleterious(0) probably_damaging(0.924) TCGA-EU-5906-01 12 49579013 49579013 C T TUBA1A Missense_Mutation p.S379N 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.837) TCGA-EU-5906-01 12 53685545 53685545 C G ESPL1 Silent p.T1864T 0.21 TCGA-EU-5906-01 14 24839730 24839730 G A NFATC4 Missense_Mutation p.D439N 0.26 deleterious(0.03) possibly_damaging(0.885) TCGA-EU-5906-01 14 45639810 45639810 T C FANCM Missense_Mutation p.L674P 0.31 tolerated(0.18) benign(0.006) TCGA-EU-5906-01 14 90730154 90730154 T A PSMC1 Missense_Mutation p.L143Q 0.29 tolerated(0.38) benign(0.002) TCGA-EU-5906-01 14 94528593 94528593 G A DDX24 Nonsense_Mutation p.Q365* 0.20 TCGA-EU-5906-01 15 100269896 100269896 T G LYSMD4 Missense_Mutation p.Q109P 0.23 deleterious(0) probably_damaging(0.999) TCGA-EU-5906-01 15 43620772 43620775 ATTA - LCMT2 Frame_Shift_Del p.L638Cfs*39 0.18 TCGA-EU-5906-01 17 18196163 18196163 G A TOP3A Silent p.Y359Y 0.18 TCGA-EU-5906-01 17 27493028 27493028 G C MYO18A Missense_Mutation p.P311A 0.21 tolerated(1) benign(0.103) TCGA-EU-5906-01 17 33520805 33520805 T C SLC35G3 Silent p.G174G 0.03 TCGA-EU-5906-01 17 35872618 35872618 C T DUSP14 Missense_Mutation p.P82S 0.04 deleterious(0.02) possibly_damaging(0.821) TCGA-EU-5906-01 19 10419249 10419249 C T ZGLP1 Missense_Mutation p.D37N 0.23 tolerated_low_confidence(0.12) benign(0.021) TCGA-EU-5906-01 19 17837059 17837059 T C MAP1S Missense_Mutation p.L289P 0.41 deleterious(0) probably_damaging(0.999) TCGA-EU-5906-01 19 53057358 53057358 A T ZNF808 Nonsense_Mutation p.K397* 0.23 TCGA-EU-5906-01 19 56539568 56539568 G A NLRP5 Missense_Mutation p.V657I 0.08 tolerated(0.15) benign(0.147) TCGA-EU-5906-01 1 15987206 15987206 T - RSC1A1 Frame_Shift_Del p.L282* 0.18 TCGA-EU-5906-01 1 167097760 167097760 A - DUSP27 Frame_Shift_Del p.M1132Wfs*33 0.13 TCGA-EU-5906-01 1 171556219 171556219 T A PRRC2C Silent p.P2607P 0.23 TCGA-EU-5906-01 1 208391298 208391298 C T PLXNA2 5'UTR 0.23 TCGA-EU-5906-01 1 234509989 234509989 G T COA6 Nonsense_Mutation p.G46* 0.22 TCGA-EU-5906-01 1 57351710 57351710 A T C8A Silent p.P322P 0.12 TCGA-EU-5906-01 1 70896063 70896063 G A CTH Missense_Mutation p.R237H 0.16 tolerated(0.27) benign(0.099) TCGA-EU-5906-01 20 44044813 44044813 C T PIGT Missense_Mutation p.P6L 0.21 tolerated_low_confidence(0.7) unknown(0) TCGA-EU-5906-01 20 44505664 44505664 A T ZSWIM3 Missense_Mutation p.Q156L 0.06 tolerated(0.33) benign(0.069) TCGA-EU-5906-01 21 16338673 16338673 G A NRIP1 Missense_Mutation p.A614V 0.10 tolerated(1) benign(0.001) TCGA-EU-5906-01 22 21161667 21161667 G A PI4KA Missense_Mutation p.T384I 0.16 tolerated(0.47) benign(0.011) TCGA-EU-5906-01 22 30740940 30740940 T A SF3A1 Silent p.L211L 0.25 TCGA-EU-5906-01 22 40742592 40742592 C G ADSL Silent p.P10P 0.25 TCGA-EU-5906-01 22 50960640 50960640 A C NCAPH2 Missense_Mutation p.K398T 0.14 deleterious(0.02) benign(0.162) TCGA-EU-5906-01 2 102486844 102486844 C G MAP4K4 Silent p.T828T 0.10 TCGA-EU-5906-01 2 131130789 131130789 C T PTPN18 Missense_Mutation p.R459W 0.13 deleterious(0) possibly_damaging(0.874) TCGA-EU-5906-01 2 145157472 145157472 C G ZEB2 Missense_Mutation p.V428L 0.27 tolerated(0.33) benign(0.091) TCGA-EU-5906-01 2 179422748 179422748 G C TTN Missense_Mutation p.D29111E 0.24 TCGA-EU-5906-01 2 179439235 179439235 G T TTN Missense_Mutation p.T23875N 0.25 TCGA-EU-5906-01 2 190608058 190608058 C T ANKAR Missense_Mutation p.R1290C 0.05 deleterious(0.01) probably_damaging(1) TCGA-EU-5906-01 2 225342980 225342980 T C CUL3 Silent p.E704E 0.16 TCGA-EU-5906-01 2 65540551 65540551 A G SPRED2 3'UTR 0.21 TCGA-EU-5906-01 3 10191572 10191575 GAAG CAA VHL Frame_Shift_Del p.E189Qfs*13 0.24 TCGA-EU-5906-01 3 121208546 121208546 A T POLQ Missense_Mutation p.C1078S 0.18 tolerated_low_confidence(0.5) benign(0.011) TCGA-EU-5906-01 3 184298799 184298810 CCCATGGACTGT - EPHB3 In_Frame_Del p.M861_P864del 0.25 TCGA-EU-5906-01 3 25835880 25835880 T G OXSM Silent p.V425V 0.42 TCGA-EU-5906-01 3 49337921 49337921 G A USP4 Silent p.D497D 0.27 TCGA-EU-5906-01 3 52084943 52084943 C T DUSP7 Missense_Mutation p.R383Q 0.05 tolerated(0.16) benign(0.38) TCGA-EU-5906-01 3 99568696 99568696 A G FILIP1L Silent p.N608N 0.19 TCGA-EU-5906-01 4 46043110 46043110 C T GABRG1 Silent p.R431R 0.19 TCGA-EU-5906-01 4 48170607 48170607 T G TEC Missense_Mutation p.K164T 0.21 tolerated(0.46) benign(0) TCGA-EU-5906-01 4 57677912 57677912 G C SPINK2 Missense_Mutation p.P50A 0.20 deleterious(0) probably_damaging(1) TCGA-EU-5906-01 5 148904678 148904678 C A CSNK1A1 Missense_Mutation p.S96I 0.23 deleterious_low_confidence(0) benign(0.412) TCGA-EU-5906-01 5 150856274 150856274 G A SLC36A1 Missense_Mutation p.A316T 0.20 tolerated(0.08) benign(0.014) TCGA-EU-5906-01 5 175110144 175110144 T - HRH2 5'UTR 0.08 TCGA-EU-5906-01 5 178557016 178557016 C T ADAMTS2 Missense_Mutation p.G792S 0.41 deleterious(0) probably_damaging(0.981) TCGA-EU-5906-01 5 33637849 33637849 G C ADAMTS12 Missense_Mutation p.P574R 0.27 deleterious(0) probably_damaging(0.993) TCGA-EU-5906-01 5 65350483 65350483 G A ERBB2IP Missense_Mutation p.A1113T 0.22 tolerated(0.35) benign(0.027) TCGA-EU-5906-01 5 79473191 79473191 C G SERINC5 Missense_Mutation p.G135R 0.23 deleterious(0.04) possibly_damaging(0.673) TCGA-EU-5906-01 6 110501714 110501714 G A CDC40 Missense_Mutation p.D23N 0.24 tolerated(0.31) unknown(0) TCGA-EU-5906-01 6 13365468 13365468 A G GFOD1 Missense_Mutation p.L227P 0.19 deleterious(0) probably_damaging(0.982) TCGA-EU-5906-01 6 151671390 151671390 C A AKAP12 Missense_Mutation p.R622S 0.21 deleterious(0) probably_damaging(1) TCGA-EU-5906-01 7 106522568 106522568 C T PIK3CG Nonsense_Mutation p.R849* 0.07 TCGA-EU-5906-01 7 112724827 112724827 T C GPR85 5'UTR 0.29 TCGA-EU-5906-01 7 142028321 142028321 G C TRBV6-1 Missense_Mutation p.V19L 0.13 tolerated(0.2) benign(0.005) TCGA-EU-5906-01 7 1523722 1523722 C A INTS1 Missense_Mutation p.V1116L 0.11 tolerated(0.21) benign(0.387) TCGA-EU-5906-01 7 57187759 57187759 G T ZNF479 Missense_Mutation p.H455N 0.05 deleterious(0.01) benign(0.21) TCGA-EU-5906-01 7 65425748 65425748 C T GUSB 3'UTR 0.30 TCGA-EU-5906-01 7 92027037 92027038 AT - ANKIB1 Frame_Shift_Del p.I800Sfs*30 0.28 TCGA-EU-5906-01 8 110346160 110346161 AG - NUDCD1 Frame_Shift_Del p.L27* 0.23 TCGA-EU-5906-01 8 134233012 134233013 TG - WISP1 Frame_Shift_Del p.C180* 0.18 TCGA-EU-5906-01 9 104130484 104130484 T A BAAT Missense_Mutation p.Y196F 0.26 tolerated(0.37) benign(0.32) TCGA-EU-5906-01 9 104309416 104309416 T C RNF20 Intron 0.21 TCGA-EU-5906-01 9 125895225 125895225 G T STRBP Missense_Mutation p.A599D 0.08 deleterious_low_confidence(0.01) benign(0.398) TCGA-EU-5906-01 9 127789180 127789180 T G SCAI Silent p.T164T 0.25 TCGA-EU-5906-01 9 86279973 86279973 C T UBQLN1 Missense_Mutation p.A474T 0.26 tolerated(0.27) probably_damaging(0.98) TCGA-EU-5906-01 9 95062258 95062258 G C NOL8 Silent p.V1072V 0.20 TCGA-EU-5907-01 10 120832959 120832959 G A EIF3A Missense_Mutation p.P124L 0.78 deleterious(0) unknown(0) TCGA-EU-5907-01 10 26463158 26463158 G T MYO3A Missense_Mutation p.G1322V 0.10 tolerated_low_confidence(0.25) probably_damaging(0.953) TCGA-EU-5907-01 10 48388012 48388012 C T RBP3 Missense_Mutation p.E956K 0.05 tolerated(0.05) benign(0.305) TCGA-EU-5907-01 10 81065919 81065919 C T ZMIZ1 Missense_Mutation p.S829L 0.90 probably_damaging(0.937) TCGA-EU-5907-01 10 89692880 89692893 ATTCACTGTAAAGC - PTEN Frame_Shift_Del p.I122Wfs*53 0.69 TCGA-EU-5907-01 11 102272803 102272803 T C TMEM123 Missense_Mutation p.T98A 0.42 tolerated(0.72) benign(0.388) TCGA-EU-5907-01 11 18303659 18303659 C G HPS5 Missense_Mutation p.G1056A 0.38 tolerated(0.22) benign(0.373) TCGA-EU-5907-01 11 63137795 63137796 - CGCGCG SLC22A9 In_Frame_Ins p.R90_F91insAR 0.34 TCGA-EU-5907-01 12 104851282 104851282 C - CHST11 Frame_Shift_Del p.Y32Ifs*54 0.35 TCGA-EU-5907-01 12 6981774 6981774 C A SPSB2 Nonsense_Mutation p.E98* 0.39 TCGA-EU-5907-01 12 93134670 93134670 T C PLEKHG7 Silent p.Y15Y 0.08 TCGA-EU-5907-01 13 43362794 43362794 A C FAM216B Silent p.S96S 0.43 TCGA-EU-5907-01 14 22788632 22788632 C T TRAV41 Missense_Mutation p.R5W 0.34 tolerated(0.2) benign(0) TCGA-EU-5907-01 14 22788633 22788633 G C TRAV41 Missense_Mutation p.R5P 0.33 tolerated(0.25) benign(0.054) TCGA-EU-5907-01 14 24737807 24737807 C G RABGGTA Missense_Mutation p.A307P 0.40 tolerated(0.2) benign(0.006) TCGA-EU-5907-01 14 24885001 24885001 C T NYNRIN Missense_Mutation p.T1349M 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EU-5907-01 14 75359600 75359601 - A DLST Frame_Shift_Ins p.A170Sfs*43 0.32 TCGA-EU-5907-01 17 10366258 10366258 T A MYH4 Missense_Mutation p.Y311F 0.51 tolerated(0.09) benign(0.025) TCGA-EU-5907-01 17 10366705 10366705 C G MYH4 Missense_Mutation p.R252T 0.44 deleterious(0) probably_damaging(1) TCGA-EU-5907-01 17 10366884 10366884 T A MYH4 Missense_Mutation p.D242V 0.32 deleterious(0) probably_damaging(1) TCGA-EU-5907-01 17 39086293 39086293 G A KRT23 Nonsense_Mutation p.R179* 0.45 TCGA-EU-5907-01 17 40120690 40120690 G A CNP Missense_Mutation p.R203H 0.06 tolerated(0.1) benign(0.015) TCGA-EU-5907-01 17 47587945 47587945 C A NGFR Missense_Mutation p.T247N 0.47 tolerated(0.45) benign(0.028) TCGA-EU-5907-01 17 67280186 67280186 G C ABCA5 Nonsense_Mutation p.S767* 0.10 TCGA-EU-5907-01 17 7139291 7139291 C G PHF23 Missense_Mutation p.G319R 0.39 deleterious(0) probably_damaging(0.996) TCGA-EU-5907-01 17 76137117 76137117 G A TMC8 Missense_Mutation p.R702H 0.46 tolerated_low_confidence(0.27) benign(0.001) TCGA-EU-5907-01 17 76170949 76170960 CCGGCAGGCTGG - TK1 In_Frame_Del p.Q196_G199del 0.46 TCGA-EU-5907-01 19 18191685 18191685 C T IL12RB1 Silent p.Q122Q 0.38 TCGA-EU-5907-01 19 2415831 2415831 C T TMPRSS9 Silent p.C545C 0.06 TCGA-EU-5907-01 19 40901528 40901528 C T PRX Missense_Mutation p.V911M 0.41 deleterious(0.02) benign(0.154) TCGA-EU-5907-01 19 47969097 47969097 C G SLC8A2 Missense_Mutation p.E188D 0.37 deleterious(0.02) probably_damaging(0.943) TCGA-EU-5907-01 19 55174440 55174440 G A LILRB4 5'UTR 0.47 TCGA-EU-5907-01 1 151280208 151280208 G C PI4KB Missense_Mutation p.L354V 0.36 tolerated(0.12) benign(0.169) TCGA-EU-5907-01 1 16256217 16256217 T C SPEN Missense_Mutation p.I1161T 0.82 probably_damaging(0.989) TCGA-EU-5907-01 1 63269471 63269471 G C ATG4C Missense_Mutation p.G5A 0.71 tolerated(0.25) probably_damaging(0.999) TCGA-EU-5907-01 20 12989763 12989763 G A SPTLC3 5'UTR 0.14 TCGA-EU-5907-01 20 34776292 34776292 G T EPB41L1 Missense_Mutation p.M299I 0.38 deleterious(0) probably_damaging(0.987) TCGA-EU-5907-01 20 44045233 44045233 A G PIGT Silent p.S88S 0.40 TCGA-EU-5907-01 20 44045300 44045300 G A PIGT Missense_Mutation p.E111K 0.43 deleterious(0) possibly_damaging(0.905) TCGA-EU-5907-01 22 38274117 38274117 G T EIF3L Missense_Mutation p.G505V 0.48 deleterious(0) probably_damaging(0.989) TCGA-EU-5907-01 2 118577223 118577223 A G DDX18 Splice_Site p.X124_splice 0.45 TCGA-EU-5907-01 2 138414637 138414637 G A THSD7B Missense_Mutation p.G1431S 0.12 deleterious(0.04) unknown(0) TCGA-EU-5907-01 2 238249156 238249156 G C COL6A3 Silent p.S2801S 0.46 TCGA-EU-5907-01 3 46874543 46874543 A T PRSS42 Silent p.P175P 0.05 TCGA-EU-5907-01 3 52661325 52661325 G C PBRM1 Nonsense_Mutation p.S502* 0.84 TCGA-EU-5907-01 4 100532310 100532310 C T MTTP Missense_Mutation p.R594C 0.15 deleterious(0) possibly_damaging(0.582) TCGA-EU-5907-01 4 20541152 20541152 C A SLIT2 Missense_Mutation p.Q641K 0.65 tolerated(0.22) benign(0.323) TCGA-EU-5907-01 5 176305475 176305475 G A UNC5A Splice_Site p.X674_splice 0.30 TCGA-EU-5907-01 5 32126321 32126321 C T GOLPH3 Silent p.K298K 0.24 TCGA-EU-5907-01 5 72743654 72743654 C T FOXD1 Silent p.S178S 0.40 TCGA-EU-5907-01 6 29976859 29976859 T A ZNRD1-AS1 RNA 0.78 TCGA-EU-5907-01 6 43024130 43024130 T G MRPL2 Missense_Mutation p.I107L 0.85 deleterious(0.01) benign(0.367) TCGA-EU-5907-01 7 116380121 116380121 G C MET Missense_Mutation p.V504L 0.43 tolerated(0.72) benign(0.442) TCGA-EU-5907-01 7 121717992 121717993 TT G AASS Frame_Shift_Del p.K854Tfs*42 0.15 TCGA-EU-5907-01 8 110477389 110477389 C T PKHD1L1 Silent p.D2776D 0.41 TCGA-EU-5907-01 8 20075680 20075680 T C ATP6V1B2 Missense_Mutation p.I428T 0.39 tolerated(0.25) possibly_damaging(0.71) TCGA-EU-5907-01 8 23306332 23306332 A G ENTPD4 Silent p.A43A 0.06 TCGA-EU-5907-01 9 84605805 84605805 C A SPATA31D1 Silent p.I140I 0.47 TCGA-G6-A5PC-01 10 118203927 118203927 A C PNLIPRP3 Missense_Mutation p.N120H 0.07 deleterious(0.03) possibly_damaging(0.8) TCGA-G6-A5PC-01 10 74692200 74692200 G A OIT3 Missense_Mutation p.R519H 0.30 deleterious(0) probably_damaging(0.999) TCGA-G6-A5PC-01 11 103093725 103093725 C G DYNC2H1 Missense_Mutation p.P3088R 0.28 probably_damaging(1) TCGA-G6-A5PC-01 11 93212351 93212351 C T SMCO4 Missense_Mutation p.R2Q 0.24 tolerated(0.07) unknown(0) TCGA-G6-A5PC-01 12 110456270 110456270 G A ANKRD13A Missense_Mutation p.R174H 0.21 deleterious(0.01) benign(0.06) TCGA-G6-A5PC-01 12 67696299 67696299 T A CAND1 Silent p.L399L 0.26 TCGA-G6-A5PC-01 13 95726544 95726544 C G ABCC4 Missense_Mutation p.W947C 0.17 deleterious(0.03) probably_damaging(0.965) TCGA-G6-A5PC-01 13 98828683 98828683 T A RNF113B Nonsense_Mutation p.K270* 0.23 TCGA-G6-A5PC-01 14 103416197 103416197 A C CDC42BPB Nonsense_Mutation p.Y1118* 0.21 TCGA-G6-A5PC-01 14 103416199 103416199 A T CDC42BPB Missense_Mutation p.Y1118N 0.20 deleterious(0) benign(0.421) TCGA-G6-A5PC-01 14 106209406 106209406 G A IGHG1 Silent p.A1A 0.24 TCGA-G6-A5PC-01 14 59930389 59930389 C A GPR135 3'UTR 0.36 TCGA-G6-A5PC-01 14 75019064 75019064 G T LTBP2 Missense_Mutation p.R409S 0.39 deleterious(0) possibly_damaging(0.66) TCGA-G6-A5PC-01 15 23006421 23006421 A G NIPA2 Silent p.L295L 0.24 TCGA-G6-A5PC-01 15 33831641 33831641 G T RYR3 Missense_Mutation p.S175I 0.16 probably_damaging(0.998) TCGA-G6-A5PC-01 15 41194904 41194904 G T VPS18 Missense_Mutation p.V763L 0.06 deleterious(0.02) probably_damaging(0.989) TCGA-G6-A5PC-01 15 45668948 45668948 G C GATM Missense_Mutation p.R47G 0.28 tolerated(0.25) benign(0) TCGA-G6-A5PC-01 16 2090134 2090134 C T NTHL1 Missense_Mutation p.R272K 0.31 tolerated(0.22) benign(0.124) TCGA-G6-A5PC-01 16 28967521 28967521 C T NFATC2IP Missense_Mutation p.P237S 0.06 tolerated(0.34) benign(0.013) TCGA-G6-A5PC-01 16 65006825 65006825 C G CDH11 Missense_Mutation p.V458L 0.28 deleterious(0) probably_damaging(0.994) TCGA-G6-A5PC-01 17 19237309 19237309 G T EPN2 Silent p.V556V 0.16 TCGA-G6-A5PC-01 17 3181887 3181887 G A OR3A2 Missense_Mutation p.L115F 0.25 tolerated(0.46) benign(0.005) TCGA-G6-A5PC-01 17 32483017 32483017 C T ASIC2 Missense_Mutation p.G179S 0.05 tolerated(0.37) benign(0.008) TCGA-G6-A5PC-01 17 43911415 43911415 G T CRHR1 Splice_Site p.X398_splice 0.26 TCGA-G6-A5PC-01 17 44145005 44145005 T - KANSL1 Frame_Shift_Del p.N521Tfs*57 0.21 TCGA-G6-A5PC-01 18 5891492 5891492 G A TMEM200C Missense_Mutation p.R191W 0.33 deleterious(0) probably_damaging(0.993) TCGA-G6-A5PC-01 18 67741226 67741226 T C RTTN Silent p.L1523L 0.18 TCGA-G6-A5PC-01 18 72226569 72226569 G A CNDP1 Silent p.E55E 0.31 TCGA-G6-A5PC-01 19 18274188 18274188 G A PIK3R2 Missense_Mutation p.R469Q 0.35 tolerated(0.06) benign(0.418) TCGA-G6-A5PC-01 19 18391212 18391212 C T JUND 3'UTR 0.44 TCGA-G6-A5PC-01 19 40030726 40030726 C A EID2 5'UTR 0.25 TCGA-G6-A5PC-01 19 52825839 52825839 C G ZNF480 Missense_Mutation p.L446V 0.06 deleterious(0.03) possibly_damaging(0.728) TCGA-G6-A5PC-01 19 53117386 53117386 A C ZNF83 Silent p.T144T 0.23 TCGA-G6-A5PC-01 19 54745481 54745481 G T LILRA6 Missense_Mutation p.P210H 0.07 deleterious(0) probably_damaging(0.996) TCGA-G6-A5PC-01 1 152785472 152785472 G C LCE1B 3'UTR 0.41 TCGA-G6-A5PC-01 1 204210546 204210546 A T PLEKHA6 Missense_Mutation p.V789E 0.20 deleterious(0.02) benign(0.183) TCGA-G6-A5PC-01 1 226455771 226455771 C A LIN9 Missense_Mutation p.D251Y 0.15 deleterious(0) probably_damaging(0.982) TCGA-G6-A5PC-01 1 228111975 228111975 C A WNT9A Missense_Mutation p.R160L 0.39 tolerated(0.05) probably_damaging(0.999) TCGA-G6-A5PC-01 1 27941994 27941994 G T FGR Silent p.A323A 0.27 TCGA-G6-A5PC-01 1 3548192 3548192 C G WRAP73 Missense_Mutation p.D360H 0.33 deleterious(0) probably_damaging(0.928) TCGA-G6-A5PC-01 1 45243291 45243291 A G RPS8 Missense_Mutation p.T73A 0.21 tolerated(0.22) benign(0.025) TCGA-G6-A5PC-01 1 46495592 46495592 T A MAST2 Missense_Mutation p.L804M 0.28 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-G6-A5PC-01 1 52255043 52255043 A C NRD1 Missense_Mutation p.N1175K 0.41 tolerated(0.6) benign(0.07) TCGA-G6-A5PC-01 1 54476010 54476010 G T LDLRAD1 Missense_Mutation p.D138E 0.26 deleterious(0) probably_damaging(0.96) TCGA-G6-A5PC-01 21 34948861 34948861 C G SON 3'UTR 0.21 TCGA-G6-A5PC-01 22 25005983 25005983 C T GGT1 5'UTR 0.24 TCGA-G6-A5PC-01 2 101874255 101874258 TTTT - CNOT11 Frame_Shift_Del p.F173Yfs*4 0.20 TCGA-G6-A5PC-01 2 16082155 16082155 A C MYCN 5'UTR 0.27 TCGA-G6-A5PC-01 2 189916098 189916098 C G COL5A2 Missense_Mutation p.G960A 0.32 unknown(0) TCGA-G6-A5PC-01 2 202172338 202172339 - T ALS2CR12 Frame_Shift_Ins p.M262Dfs*14 0.35 TCGA-G6-A5PC-01 2 24205880 24205880 A C UBXN2A Silent p.S134S 0.23 TCGA-G6-A5PC-01 2 28855830 28855830 C T PLB1 Missense_Mutation p.T1341I 0.32 deleterious(0) probably_damaging(0.974) TCGA-G6-A5PC-01 2 37286061 37286061 G C HEATR5B Missense_Mutation p.P640R 0.25 deleterious(0) probably_damaging(0.983) TCGA-G6-A5PC-01 2 72945319 72945321 TAT AA EXOC6B Frame_Shift_Del p.I194Lfs*28 0.26 TCGA-G6-A5PC-01 2 86832162 86832162 A G RNF103 Missense_Mutation p.Y288H 0.29 deleterious(0) probably_damaging(0.998) TCGA-G6-A5PC-01 3 113379288 113379288 A - KIAA2018 Frame_Shift_Del p.L414* 0.20 TCGA-G6-A5PC-01 3 12611627 12611627 C T MKRN2 Silent p.H71H 0.34 TCGA-G6-A5PC-01 3 196439029 196439029 G A CEP19 5'UTR 0.50 TCGA-G6-A5PC-01 3 52437191 52437191 G - BAP1 Frame_Shift_Del p.P618Lfs*5 0.20 TCGA-G6-A5PC-01 4 106157074 106157074 C T TET2 Nonsense_Mutation p.Q659* 0.03 TCGA-G6-A5PC-01 4 115754867 115754867 A G NDST4 Missense_Mutation p.L764P 0.29 tolerated(0.05) probably_damaging(1) TCGA-G6-A5PC-01 4 169923065 169923065 A - CBR4 Intron 0.24 TCGA-G6-A5PC-01 4 184607860 184607863 CCCA - TRAPPC11 Frame_Shift_Del p.P618Lfs*20 0.28 TCGA-G6-A5PC-01 4 186267757 186267757 C T SNX25 Nonsense_Mutation p.Q588* 0.27 TCGA-G6-A5PC-01 4 71467220 71467220 T C AMBN Missense_Mutation p.L127P 0.29 tolerated(0.19) benign(0.31) TCGA-G6-A5PC-01 5 140596854 140596854 G C PCDHB13 3'UTR 0.15 TCGA-G6-A5PC-01 5 175386643 175386643 A C THOC3 3'UTR 0.26 TCGA-G6-A5PC-01 5 178413189 178413189 G - GRM6 Frame_Shift_Del p.P689Lfs*24 0.20 TCGA-G6-A5PC-01 5 179045234 179045234 A G HNRNPH1 Silent p.P209P 0.18 TCGA-G6-A5PC-01 6 101054679 101054679 T C ASCC3 Missense_Mutation p.I1661V 0.21 tolerated(1) benign(0.047) TCGA-G6-A5PC-01 6 146480509 146480509 C T GRM1 Silent p.D242D 0.07 TCGA-G6-A5PC-01 6 33543199 33543199 G A BAK1 Missense_Mutation p.R76W 0.08 deleterious(0) probably_damaging(0.986) TCGA-G6-A5PC-01 6 42934010 42934010 A T PEX6 Missense_Mutation p.V757E 0.24 deleterious(0) probably_damaging(0.996) TCGA-G6-A5PC-01 6 71569274 71569274 T C B3GAT2 3'UTR 0.29 TCGA-G6-A5PC-01 7 135323335 135323335 T G NUP205 Missense_Mutation p.S1766A 0.23 tolerated(0.31) benign(0.001) TCGA-G6-A5PC-01 7 136700017 136700017 G T CHRM2 Silent p.R135R 0.16 TCGA-G6-A5PC-01 8 134251098 134251098 G T NDRG1 3'UTR 0.19 TCGA-G6-A5PC-01 8 134251099 134251099 G T NDRG1 3'UTR 0.23 TCGA-G6-A5PC-01 8 1719524 1719539 TGGTGCTGGTTTCACA - CLN8 Frame_Shift_Del p.W102Sfs*20 0.16 TCGA-G6-A5PC-01 8 25364661 25364661 A G CDCA2 Missense_Mutation p.R827G 0.31 tolerated(0.05) benign(0.117) TCGA-G6-A5PC-01 9 80144045 80144045 C A GNA14 Missense_Mutation p.M83I 0.26 tolerated(0.36) benign(0.001) TCGA-G6-A5PC-01 9 84532480 84532480 G T SPATA31D5P RNA 0.23 TCGA-G6-A5PC-01 9 87570358 87570358 G A NTRK2 Missense_Mutation p.V700I 0.24 deleterious(0) probably_damaging(0.995) TCGA-G6-A5PC-01 9 90388487 90388487 A G CTSL3P RNA 0.25 TCGA-G6-A5PC-01 X 155007348 155007348 T A SPRY3 3'UTR 0.28 TCGA-G6-A5PC-01 X 2833636 2833636 A C ARSD Missense_Mutation p.L321V 0.25 tolerated(0.1) benign(0.314) TCGA-G6-A5PC-01 X 51151376 51151376 C T CXorf67 Missense_Mutation p.P503L 0.28 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-G6-A5PC-01 X 65242566 65242566 G A VSIG4 Intron 0.20 TCGA-G6-A5PC-01 X 70627955 70627955 C T TAF1 Silent p.F1466F 0.16 TCGA-G6-A8L6-01 10 102048229 102048229 G A PKD2L1 Missense_Mutation p.P781L 0.33 deleterious_low_confidence(0.02) benign(0.024) TCGA-G6-A8L6-01 10 27687790 27687790 A T PTCHD3 Silent p.T579T 0.35 TCGA-G6-A8L6-01 10 28970927 28970927 A TT BAMBI Frame_Shift_Ins p.Y127Ffs*4 0.19 TCGA-G6-A8L6-01 10 55581444 55581444 G C PCDH15 3'UTR 0.20 TCGA-G6-A8L6-01 10 92675556 92675556 G A ANKRD1 Missense_Mutation p.L245F 0.21 deleterious(0.01) probably_damaging(1) TCGA-G6-A8L6-01 10 93940719 93940720 - T CPEB3 Frame_Shift_Ins p.N408Kfs*6 0.24 TCGA-G6-A8L6-01 11 32126559 32126559 G T RCN1 3'UTR 0.22 TCGA-G6-A8L6-01 11 60233537 60233537 A T MS4A1 Silent p.P160P 0.03 TCGA-G6-A8L6-01 12 108686438 108686438 A G CMKLR1 Missense_Mutation p.M101T 0.27 deleterious(0.02) benign(0.1) TCGA-G6-A8L6-01 12 109536122 109536122 T C UNG Intron 0.05 TCGA-G6-A8L6-01 12 23998997 23998997 C T SOX5 Missense_Mutation p.R134Q 0.26 deleterious(0.03) probably_damaging(0.99) TCGA-G6-A8L6-01 12 50399109 50399109 C T RACGAP1 Missense_Mutation p.E119K 0.07 deleterious(0.01) possibly_damaging(0.598) TCGA-G6-A8L6-01 12 56554622 56554622 A T MYL6 Intron 0.35 TCGA-G6-A8L6-01 12 67691302 67691302 G C CAND1 Missense_Mutation p.V203L 0.32 tolerated(0.23) benign(0.006) TCGA-G6-A8L6-01 12 78583962 78583962 C A NAV3 Missense_Mutation p.A2063E 0.06 tolerated(0.17) possibly_damaging(0.697) TCGA-G6-A8L6-01 12 83359401 83359401 A G TMTC2 Missense_Mutation p.T583A 0.08 tolerated(0.21) benign(0.034) TCGA-G6-A8L6-01 12 99793497 99793497 G T ANKS1B Nonsense_Mutation p.C556* 0.14 TCGA-G6-A8L6-01 13 100153825 100153825 C A TM9SF2 5'UTR 0.36 TCGA-G6-A8L6-01 13 114839194 114839194 C T RASA3 Splice_Site p.X58_splice 0.31 TCGA-G6-A8L6-01 14 101348830 101348830 C G RTL1 Missense_Mutation p.D766H 0.55 deleterious(0) possibly_damaging(0.77) TCGA-G6-A8L6-01 14 65544736 65544742 GGATTTG - MAX Frame_Shift_Del p.Q62* 0.28 TCGA-G6-A8L6-01 14 71199484 71199484 C A MAP3K9 Nonsense_Mutation p.E882* 0.11 TCGA-G6-A8L6-01 14 93651751 93651752 - T TMEM251 Frame_Shift_Ins p.M7Ifs*12 0.29 TCGA-G6-A8L6-01 15 62999420 62999420 C G TLN2 Missense_Mutation p.L714V 0.26 deleterious(0.01) benign(0.257) TCGA-G6-A8L6-01 15 85438654 85438654 T A SLC28A1 Intron 0.19 TCGA-G6-A8L6-01 16 19132080 19132080 G A ITPRIPL2 3'UTR 0.27 TCGA-G6-A8L6-01 16 20702366 20702366 A C ACSM1 Missense_Mutation p.F49V 0.34 deleterious(0.01) probably_damaging(1) TCGA-G6-A8L6-01 16 24888683 24888683 T C SLC5A11 Silent p.A194A 0.32 TCGA-G6-A8L6-01 16 31765333 31765333 T G ZNF720 Intron 0.43 TCGA-G6-A8L6-01 16 324991 324991 C T RGS11 Silent p.T101T 0.22 TCGA-G6-A8L6-01 16 832028 832028 C T MSLNL Missense_Mutation p.S32N 0.12 possibly_damaging(0.682) TCGA-G6-A8L6-01 16 86613641 86613641 C T FOXL1 3'UTR 0.37 TCGA-G6-A8L6-01 17 26940509 26940509 G C RP11-192H23.4 Silent p.L91L 0.31 TCGA-G6-A8L6-01 17 43220839 43220839 A G ACBD4 Missense_Mutation p.H286R 0.22 deleterious_low_confidence(0.04) benign(0.047) TCGA-G6-A8L6-01 17 60005201 60005201 G C INTS2 Intron 0.45 TCGA-G6-A8L6-01 17 65850253 65850253 T C BPTF Missense_Mutation p.C271R 0.29 probably_damaging(0.987) TCGA-G6-A8L6-01 17 73008803 73008803 C T ICT1 Missense_Mutation p.R8C 0.31 deleterious_low_confidence(0.04) benign(0.005) TCGA-G6-A8L6-01 18 29339677 29339689 TCTTCTTAGAAGG - SLC25A52 3'UTR 0.23 TCGA-G6-A8L6-01 18 29790581 29790581 A G MEP1B Missense_Mutation p.Y346C 0.33 deleterious(0.02) probably_damaging(0.953) TCGA-G6-A8L6-01 18 56390305 56390305 A T MALT1 Silent p.I348I 0.11 TCGA-G6-A8L6-01 19 12874183 12874183 C G HOOK2 Silent p.L691L 0.30 TCGA-G6-A8L6-01 19 2227017 2227017 C T DOT1L Silent p.S1499S 0.17 TCGA-G6-A8L6-01 19 55112185 55112185 C T LILRA1 Missense_Mutation p.T458I 0.06 deleterious(0) benign(0.288) TCGA-G6-A8L6-01 19 56735133 56735133 G C ZSCAN5A Missense_Mutation p.S152C 0.35 deleterious(0.03) benign(0.006) TCGA-G6-A8L6-01 19 57967818 57967818 T G VN1R1 Missense_Mutation p.M13L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-G6-A8L6-01 1 156721929 156721930 - TC HDGF Intron 0.25 TCGA-G6-A8L6-01 1 158152684 158152684 G C CD1D Missense_Mutation p.W208C 0.27 deleterious(0) probably_damaging(0.974) TCGA-G6-A8L6-01 1 24128799 24128799 C T HMGCL 3'UTR 0.28 TCGA-G6-A8L6-01 1 248128980 248128980 C T OR2AK2 Missense_Mutation p.T116M 0.36 tolerated(0.24) possibly_damaging(0.75) TCGA-G6-A8L6-01 1 86965370 86965370 T G CLCA1 Missense_Mutation p.I796S 0.33 tolerated(0.12) possibly_damaging(0.776) TCGA-G6-A8L6-01 20 43934176 43934176 G T MATN4 Missense_Mutation p.P16H 0.14 probably_damaging(0.95) TCGA-G6-A8L6-01 20 60902604 60902604 G A LAMA5 Missense_Mutation p.S1640L 0.23 benign(0) TCGA-G6-A8L6-01 20 61536986 61536986 C G DIDO1 Intron 0.09 TCGA-G6-A8L6-01 21 30319809 30319809 T G LTN1 Missense_Mutation p.K1201T 0.29 tolerated(0.21) benign(0.363) TCGA-G6-A8L6-01 21 47614502 47614502 C - LSS Frame_Shift_Del p.E631Rfs*26 0.12 TCGA-G6-A8L6-01 22 16256599 16256599 G T POTEH 3'UTR 0.03 TCGA-G6-A8L6-01 2 113147319 113147319 C G RGPD8 Missense_Mutation p.R1068T 0.25 deleterious(0) probably_damaging(1) TCGA-G6-A8L6-01 2 113251868 113251878 GAATTCTTTCT CC TTL In_Frame_Del p.E129_L132delinsP 0.19 TCGA-G6-A8L6-01 2 128180634 128180634 C T PROC Missense_Mutation p.P96L 0.27 deleterious(0) possibly_damaging(0.533) TCGA-G6-A8L6-01 2 170780596 170780596 T C UBR3 Silent p.A645A 0.18 TCGA-G6-A8L6-01 2 213878611 213878611 T G IKZF2 Missense_Mutation p.N254H 0.34 tolerated(0.12) possibly_damaging(0.548) TCGA-G6-A8L6-01 2 55436611 55436611 C A CLHC1 Missense_Mutation p.W248L 0.32 deleterious(0.01) possibly_damaging(0.533) TCGA-G6-A8L6-01 2 8957772 8957772 C T KIDINS220 Silent p.G94G 0.08 TCGA-G6-A8L6-01 3 10183773 10183774 - A VHL Frame_Shift_Ins p.R82Afs*50 0.33 TCGA-G6-A8L6-01 3 47084150 47084151 GG T SETD2 Frame_Shift_Del p.P2380Tfs*31 0.27 TCGA-G6-A8L6-01 3 52668694 52668694 A - PBRM1 Frame_Shift_Del p.Y409Tfs*29 0.30 TCGA-G6-A8L6-01 4 149075832 149075832 A C NR3C2 Missense_Mutation p.I745M 0.26 deleterious(0) benign(0.34) TCGA-G6-A8L6-01 4 184562555 184562555 A G RWDD4 3'UTR 0.05 TCGA-G6-A8L6-01 4 188925360 188925360 G T ZFP42 3'UTR 0.33 TCGA-G6-A8L6-01 4 26491856 26491856 T C CCKAR Missense_Mutation p.S12G 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.509) TCGA-G6-A8L6-01 4 52861964 52861965 - T LRRC66 Frame_Shift_Ins p.C409Vfs*20 0.33 TCGA-G6-A8L6-01 4 85525505 85525505 T G CDS1 Missense_Mutation p.L76R 0.32 deleterious(0) probably_damaging(0.954) TCGA-G6-A8L6-01 4 96137285 96137285 C T UNC5C Missense_Mutation p.E575K 0.23 deleterious(0.04) benign(0.04) TCGA-G6-A8L6-01 5 140793206 140793206 G A PCDHGA10 Missense_Mutation p.R155H 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.614) TCGA-G6-A8L6-01 5 179545654 179545654 G A RASGEF1C Silent p.R346R 0.21 TCGA-G6-A8L6-01 5 32601161 32601161 G A SUB1 Missense_Mutation p.D119N 0.27 tolerated(0.09) benign(0.168) TCGA-G6-A8L6-01 5 53816335 53816335 C T SNX18 3'UTR 0.04 TCGA-G6-A8L6-01 5 71627157 71627157 C T PTCD2 Silent p.Y141Y 0.17 TCGA-G6-A8L6-01 5 94834217 94834217 C T TTC37 Silent p.L1140L 0.27 TCGA-G6-A8L6-01 6 112462566 112462566 A G LAMA4 Missense_Mutation p.I936T 0.05 deleterious(0.04) possibly_damaging(0.9) TCGA-G6-A8L6-01 6 144507776 144507776 G A STX11 Silent p.R4R 0.39 TCGA-G6-A8L6-01 6 144758855 144758855 G T UTRN Missense_Mutation p.R405M 0.04 deleterious(0) probably_damaging(1) TCGA-G6-A8L6-01 6 160113380 160113380 C A SOD2 Intron 0.27 TCGA-G6-A8L6-01 6 7584018 7584018 C A DSP Missense_Mutation p.P2175T 0.15 probably_damaging(0.998) TCGA-G6-A8L6-01 6 88046869 88046869 G T SMIM8 Missense_Mutation p.E40D 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-G6-A8L6-01 6 96656473 96656473 G T FUT9 3'UTR 0.28 TCGA-G6-A8L6-01 7 139737566 139737566 C A PARP12 Missense_Mutation p.A425S 0.26 tolerated(0.25) benign(0.091) TCGA-G6-A8L6-01 8 109488158 109488158 C A EMC2 Missense_Mutation p.P186Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-G6-A8L6-01 9 127700908 127700908 G C GOLGA1 Missense_Mutation p.S28C 0.25 deleterious(0) probably_damaging(0.954) TCGA-G6-A8L6-01 9 36117089 36117089 T - RECK Frame_Shift_Del p.C724Vfs*109 0.12 TCGA-G6-A8L6-01 X 102317835 102317835 A G BEX1 Missense_Mutation p.L123P 0.06 deleterious(0.02) possibly_damaging(0.859) TCGA-G6-A8L6-01 X 10535176 10535176 C A MID1 Nonsense_Mutation p.E138* 0.38 TCGA-G6-A8L6-01 X 115303962 115303962 C T AGTR2 Silent p.Y143Y 0.34 TCGA-G6-A8L6-01 X 130411090 130411090 A G IGSF1 Missense_Mutation p.Y816H 0.65 tolerated(0.09) probably_damaging(0.996) TCGA-G6-A8L6-01 X 153695588 153695588 T C PLXNA3 Missense_Mutation p.I1072T 0.73 tolerated(0.12) benign(0.428) TCGA-G6-A8L6-01 X 48382199 48382199 C T EBP Nonsense_Mutation p.Q14* 0.43 TCGA-G6-A8L7-01 10 13341588 13341588 C T PHYH Intron 0.34 TCGA-G6-A8L7-01 10 45500673 45500673 A C ZNF22 3'UTR 0.18 TCGA-G6-A8L7-01 10 71690163 71690163 G A COL13A1 Missense_Mutation p.R502H 0.22 deleterious(0) probably_damaging(0.998) TCGA-G6-A8L7-01 11 118769826 118769826 C A BCL9L Silent p.L1266L 0.26 TCGA-G6-A8L7-01 11 118984833 118984833 C T C2CD2L Missense_Mutation p.A557V 0.33 deleterious(0.02) benign(0.22) TCGA-G6-A8L7-01 11 134254051 134254051 C T B3GAT1 Silent p.P48P 0.25 TCGA-G6-A8L7-01 11 18113806 18113806 A G SAAL1 Silent p.S133S 0.25 TCGA-G6-A8L7-01 11 34176317 34176317 C T ABTB2 Splice_Site p.X900_splice 0.21 TCGA-G6-A8L7-01 11 70194331 70194331 G A PPFIA1 Silent p.R656R 0.17 TCGA-G6-A8L7-01 12 118199129 118199129 C T KSR2 Missense_Mutation p.D225N 0.29 tolerated(0.24) benign(0.021) TCGA-G6-A8L7-01 12 118619319 118619319 G C TAOK3 Missense_Mutation p.L475V 0.07 deleterious(0) possibly_damaging(0.688) TCGA-G6-A8L7-01 12 49398373 49398373 T C PRKAG1 Missense_Mutation p.R161G 0.24 deleterious(0) probably_damaging(0.988) TCGA-G6-A8L7-01 12 53097245 53097245 G T KRT77 5'UTR 0.31 TCGA-G6-A8L7-01 13 20660031 20660031 C T ZMYM2 Silent p.S1337S 0.05 TCGA-G6-A8L7-01 14 23891485 23891485 C T MYH7 Missense_Mutation p.R1050Q 0.19 deleterious(0) probably_damaging(0.989) TCGA-G6-A8L7-01 14 24880382 24880382 T G NYNRIN Missense_Mutation p.W839G 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G6-A8L7-01 14 50611998 50611998 T C SOS2 Missense_Mutation p.I853V 0.23 tolerated(0.32) benign(0.007) TCGA-G6-A8L7-01 14 53513526 53513526 T C DDHD1 Missense_Mutation p.E888G 0.24 deleterious_low_confidence(0) benign(0.003) TCGA-G6-A8L7-01 14 73444889 73444889 G A ZFYVE1 Silent p.S491S 0.38 TCGA-G6-A8L7-01 14 89172735 89172735 G A EML5 Missense_Mutation p.H565Y 0.21 deleterious(0) probably_damaging(0.989) TCGA-G6-A8L7-01 15 79178521 79178521 A G MORF4L1 Missense_Mutation p.Y104C 0.03 deleterious(0.01) possibly_damaging(0.571) TCGA-G6-A8L7-01 15 89401335 89401335 C - ACAN Frame_Shift_Del p.P1841Lfs*10 0.21 TCGA-G6-A8L7-01 16 11650216 11650216 G C LITAF Intron 0.24 TCGA-G6-A8L7-01 16 19729686 19729686 A G IQCK Missense_Mutation p.T20A 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-G6-A8L7-01 16 49672555 49672555 A T ZNF423 Missense_Mutation p.Y170N 0.24 deleterious(0) possibly_damaging(0.836) TCGA-G6-A8L7-01 16 56623534 56623534 G T MT3 Splice_Site p.X11_splice 0.17 TCGA-G6-A8L7-01 16 772754 772754 G A CCDC78 3'UTR 0.28 TCGA-G6-A8L7-01 16 772755 772755 C T CCDC78 3'UTR 0.28 TCGA-G6-A8L7-01 17 12896063 12896063 A C ELAC2 3'UTR 0.27 TCGA-G6-A8L7-01 17 26084361 26084361 C A NOS2 Nonsense_Mutation p.E1125* 0.37 TCGA-G6-A8L7-01 17 56326442 56326442 C T LPO Missense_Mutation p.S116L 0.19 tolerated(0.65) benign(0.001) TCGA-G6-A8L7-01 17 72725477 72725477 T G RAB37 Missense_Mutation p.F52C 0.38 deleterious(0) benign(0.14) TCGA-G6-A8L7-01 17 76227812 76227812 C T TMEM235 5'Flank 0.39 TCGA-G6-A8L7-01 17 77016156 77016156 C A C1QTNF1-AS1 Missense_Mutation p.M24I 0.49 benign(0.045) TCGA-G6-A8L7-01 17 79846280 79846280 C A ALYREF Missense_Mutation p.G206V 0.56 tolerated(0.07) possibly_damaging(0.718) TCGA-G6-A8L7-01 18 22807053 22807053 C G ZNF521 Missense_Mutation p.D277H 0.21 deleterious(0.01) possibly_damaging(0.838) TCGA-G6-A8L7-01 18 29867636 29867636 G T GAREM Silent p.L308L 0.26 TCGA-G6-A8L7-01 18 61304788 61304788 A T SERPINB4 3'UTR 0.18 TCGA-G6-A8L7-01 19 15132478 15132478 T C CCDC105 Silent p.C364C 0.31 TCGA-G6-A8L7-01 19 19337783 19337783 G T NCAN Nonsense_Mutation p.E521* 0.27 TCGA-G6-A8L7-01 19 42557751 42557751 C A GRIK5 Intron 0.30 TCGA-G6-A8L7-01 19 42839313 42839313 A C MEGF8 Missense_Mutation p.I229L 0.22 tolerated(0.91) benign(0.005) TCGA-G6-A8L7-01 19 46206159 46206160 CA - QPCTL Splice_Site p.X335_splice 0.18 TCGA-G6-A8L7-01 1 10434494 10434494 T A KIF1B Silent p.L1643L 0.25 TCGA-G6-A8L7-01 1 114225546 114225546 C T MAGI3 Missense_Mutation p.S1119F 0.25 deleterious(0.03) benign(0.059) TCGA-G6-A8L7-01 1 114300349 114300350 TC A PHTF1 Frame_Shift_Del p.E25* 0.19 TCGA-G6-A8L7-01 1 120306871 120306872 - T HMGCS2 Frame_Shift_Ins p.D161Efs*44 0.20 TCGA-G6-A8L7-01 1 162336853 162336853 G A RP11-565P22.6 Missense_Mutation p.D59N 0.19 deleterious(0.01) benign(0.308) TCGA-G6-A8L7-01 1 2421297 2421297 C A PLCH2 Silent p.L475L 0.30 TCGA-G6-A8L7-01 1 2985816 2985816 C T PRDM16 5'UTR 0.08 TCGA-G6-A8L7-01 1 43308664 43308673 CCTTGCCTTC - ERMAP Frame_Shift_Del p.P397Mfs*10 0.11 TCGA-G6-A8L7-01 1 46860021 46860021 A G FAAH Translation_Start_Site p.M1? 0.32 tolerated_low_confidence(0.07) possibly_damaging(0.867) TCGA-G6-A8L7-01 1 51913788 51913795 CAGTATAC - EPS15 Frame_Shift_Del p.V192Cfs*20 0.16 TCGA-G6-A8L7-01 20 25655469 25655469 C T ZNF337 3'UTR 0.38 TCGA-G6-A8L7-01 20 34025518 34025518 C - GDF5 Frame_Shift_Del p.S64Tfs*23 0.20 TCGA-G6-A8L7-01 21 22906952 22906952 G T NCAM2 Nonsense_Mutation p.E793* 0.17 TCGA-G6-A8L7-01 22 40807853 40807853 C A MKL1 Silent p.P779P 0.31 TCGA-G6-A8L7-01 2 133538711 133538711 G A NCKAP5 Missense_Mutation p.L1655F 0.20 tolerated(0.16) benign(0.013) TCGA-G6-A8L7-01 2 232578109 232578109 G A PTMA 3'UTR 0.20 TCGA-G6-A8L7-01 2 241463230 241463230 G A ANKMY1 Intron 0.20 TCGA-G6-A8L7-01 2 32475744 32475744 C A NLRC4 Missense_Mutation p.A397S 0.19 deleterious(0.01) possibly_damaging(0.808) TCGA-G6-A8L7-01 2 70742028 70742028 C T TGFA Silent p.A19A 0.19 TCGA-G6-A8L7-01 2 74709771 74709771 T - CCDC142 Frame_Shift_Del p.E65Gfs*58 0.19 TCGA-G6-A8L7-01 2 98262520 98262520 C A COX5B 5'UTR 0.22 TCGA-G6-A8L7-01 3 10081464 10081464 C T FANCD2 Silent p.D210D 0.14 TCGA-G6-A8L7-01 3 111313087 111313087 T C ZBED2 5'UTR 0.27 TCGA-G6-A8L7-01 3 124369662 124369662 A C KALRN Missense_Mutation p.E161A 0.22 deleterious(0.02) possibly_damaging(0.775) TCGA-G6-A8L7-01 3 126740985 126740985 C T PLXNA1 Missense_Mutation p.H1366Y 0.20 tolerated(1) possibly_damaging(0.663) TCGA-G6-A8L7-01 3 183994369 183994369 C T ECE2 Intron 0.30 TCGA-G6-A8L7-01 3 186272811 186272811 G T TBCCD1 Silent p.R308R 0.26 TCGA-G6-A8L7-01 3 192973503 192973503 G A HRASLS Missense_Mutation p.E127K 0.04 deleterious(0.01) probably_damaging(1) TCGA-G6-A8L7-01 3 52620611 52620611 T - PBRM1 Frame_Shift_Del p.I1048Lfs*86 0.22 TCGA-G6-A8L7-01 4 155156802 155156802 G A DCHS2 Missense_Mutation p.S2546F 0.26 deleterious(0.02) benign(0.388) TCGA-G6-A8L7-01 4 188924947 188924947 C T ZFP42 3'UTR 0.24 TCGA-G6-A8L7-01 4 80828364 80828364 C T ANTXR2 3'UTR 0.33 TCGA-G6-A8L7-01 5 112903484 112903484 T C YTHDC2 Missense_Mutation p.L1061S 0.20 tolerated(0.08) benign(0.008) TCGA-G6-A8L7-01 5 114572177 114572177 A T PGGT1B Missense_Mutation p.F174L 0.20 deleterious(0) probably_damaging(0.956) TCGA-G6-A8L7-01 5 118867087 118867087 G - HSD17B4 Frame_Shift_Del p.A687Lfs*7 0.18 TCGA-G6-A8L7-01 5 138665183 138665183 A G MATR3 3'UTR 0.27 TCGA-G6-A8L7-01 5 142500583 142500583 G T ARHGAP26 Missense_Mutation p.M523I 0.18 deleterious(0) benign(0.076) TCGA-G6-A8L7-01 5 150925345 150925345 G A FAT2 Silent p.N1781N 0.18 TCGA-G6-A8L7-01 5 172550090 172550090 A C CREBRF Missense_Mutation p.L563F 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-G6-A8L7-01 5 175112640 175112640 G T HRH2 3'UTR 0.23 TCGA-G6-A8L7-01 6 117704577 117704577 T C ROS1 Missense_Mutation p.Y800C 0.36 deleterious(0) probably_damaging(0.956) TCGA-G6-A8L7-01 6 24418342 24418342 A C MRS2 Silent p.A289A 0.31 TCGA-G6-A8L7-01 6 29574167 29574167 C A GABBR1 Splice_Site p.X771_splice 0.27 TCGA-G6-A8L7-01 6 33694615 33694615 G A IP6K3 Missense_Mutation p.T161I 0.27 tolerated(0.13) benign(0.021) TCGA-G6-A8L7-01 7 147183071 147183071 C G CNTNAP2 Missense_Mutation p.T572R 0.20 deleterious(0) possibly_damaging(0.629) TCGA-G6-A8L7-01 7 29923892 29923892 C T WIPF3 Missense_Mutation p.P261L 0.18 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-G6-A8L7-01 7 64169532 64169532 A G ZNF107 3'UTR 0.33 TCGA-G6-A8L7-01 7 82387844 82387844 G A PCLO 3'UTR 0.24 TCGA-G6-A8L7-01 8 110454287 110454287 G A PKHD1L1 Missense_Mutation p.G1419E 0.24 deleterious(0) probably_damaging(0.998) TCGA-G6-A8L7-01 8 48811121 48811121 G A PRKDC Nonsense_Mutation p.Q1125* 0.27 TCGA-G6-A8L7-01 8 57224833 57224833 G - SDR16C5 Frame_Shift_Del p.G117Afs*6 0.22 TCGA-G6-A8L7-01 9 135779843 135779843 T C TSC1 Splice_Site p.X666_splice 0.27 TCGA-G6-A8L7-01 9 18753338 18753338 G T ADAMTSL1 Silent p.G683G 0.37 TCGA-G6-A8L7-01 9 35381165 35381165 G A UNC13B Missense_Mutation p.E733K 0.31 deleterious(0.02) probably_damaging(0.913) TCGA-G6-A8L7-01 9 72047491 72047491 G A APBA1 Silent p.H801H 0.30 TCGA-G6-A8L7-01 X 53627097 53627097 T A HUWE1 Missense_Mutation p.Q1048H 0.26 benign(0.091) TCGA-G6-A8L7-01 X 79984369 79984369 T G BRWD3 Missense_Mutation p.K423T 0.20 deleterious(0) benign(0.257) TCGA-G6-A8L8-01 10 119013571 119013571 C T SLC18A2 Missense_Mutation p.S179F 0.06 deleterious(0) possibly_damaging(0.595) TCGA-G6-A8L8-01 10 34625142 34625142 C T PARD3 Missense_Mutation p.D867N 0.45 tolerated(0.48) benign(0.049) TCGA-G6-A8L8-01 10 6054621 6054621 G T IL2RA 3'UTR 0.36 TCGA-G6-A8L8-01 10 73475898 73475898 G C C10orf105 Missense_Mutation p.P66R 0.41 tolerated(0.33) possibly_damaging(0.588) TCGA-G6-A8L8-01 11 117066583 117066583 C A SIDT2 Missense_Mutation p.H796Q 0.38 deleterious(0) probably_damaging(1) TCGA-G6-A8L8-01 11 1718938 1718938 G C KRTAP5-6 3'UTR 0.33 TCGA-G6-A8L8-01 11 45971030 45971030 T - PHF21A Frame_Shift_Del p.I383Sfs*32 0.22 TCGA-G6-A8L8-01 11 76834847 76834847 G A CAPN5 Silent p.R618R 0.05 TCGA-G6-A8L8-01 12 85450609 85450609 A G LRRIQ1 Missense_Mutation p.R680G 0.04 tolerated(0.05) benign(0.075) TCGA-G6-A8L8-01 13 26789215 26789215 C A RNF6 Missense_Mutation p.R268S 0.04 deleterious(0.01) benign(0.255) TCGA-G6-A8L8-01 13 49283257 49283257 A G CYSLTR2 3'UTR 0.38 TCGA-G6-A8L8-01 13 78474666 78474666 C T EDNRB Missense_Mutation p.E449K 0.31 tolerated(0.06) benign(0.283) TCGA-G6-A8L8-01 15 69320586 69320587 - CTATCTATGACTCCTATTCTATCTA NOX5 Nonsense_Mutation p.D70Yfs*3 0.16 TCGA-G6-A8L8-01 15 72612073 72612073 A T CELF6 Missense_Mutation p.L48H 0.07 deleterious(0) probably_damaging(1) TCGA-G6-A8L8-01 16 4873908 4873908 C G GLYR1 Missense_Mutation p.D180H 0.33 deleterious(0.04) possibly_damaging(0.628) TCGA-G6-A8L8-01 16 56716434 56716434 T A MT1X 5'UTR 0.61 TCGA-G6-A8L8-01 16 69352818 69352819 - CAAT VPS4A Frame_Shift_Ins p.K148Nfs*60 0.52 TCGA-G6-A8L8-01 16 76572224 76572224 C G CNTNAP4 Missense_Mutation p.I996M 0.04 deleterious(0.01) probably_damaging(0.971) TCGA-G6-A8L8-01 17 1028546 1028546 G A ABR Missense_Mutation p.P73L 0.47 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-G6-A8L8-01 17 10350421 10350421 C A MYH4 Missense_Mutation p.R1693M 0.37 deleterious(0) probably_damaging(0.934) TCGA-G6-A8L8-01 17 21322807 21322807 C T KCNJ12 3'UTR 0.37 TCGA-G6-A8L8-01 17 45481946 45481946 T G EFCAB13 Missense_Mutation p.I727S 0.46 deleterious(0) benign(0.359) TCGA-G6-A8L8-01 17 45786762 45786762 C G TBKBP1 Missense_Mutation p.P555A 0.21 tolerated(0.11) unknown(0) TCGA-G6-A8L8-01 17 61907535 61907535 A G PSMC5 Missense_Mutation p.I103V 0.39 tolerated(0.58) benign(0.004) TCGA-G6-A8L8-01 17 73269466 73269466 G C SLC25A19 3'UTR 0.75 TCGA-G6-A8L8-01 18 12794208 12794208 A G PTPN2 3'UTR 0.37 TCGA-G6-A8L8-01 19 10473230 10473230 T A TYK2 Missense_Mutation p.S491C 0.35 tolerated(0.09) benign(0.071) TCGA-G6-A8L8-01 19 1056410 1056410 C - ABCA7 Frame_Shift_Del p.P1501Qfs*17 0.33 TCGA-G6-A8L8-01 19 11200203 11200203 C A LDLR 5'UTR 0.37 TCGA-G6-A8L8-01 19 12024351 12024351 G A ZNF69 3'UTR 0.38 TCGA-G6-A8L8-01 19 19735170 19735170 C G LPAR2 Missense_Mutation p.Q317H 0.36 tolerated(0.13) benign(0) TCGA-G6-A8L8-01 19 37037702 37037702 T A ZNF529 3'UTR 0.35 TCGA-G6-A8L8-01 19 407411 407411 G A C2CD4C Silent p.A317A 0.25 TCGA-G6-A8L8-01 19 49001049 49001049 G A LMTK3 Missense_Mutation p.P1122S 0.44 unknown(0) TCGA-G6-A8L8-01 19 49002517 49002517 G T LMTK3 Silent p.G632G 0.38 TCGA-G6-A8L8-01 19 50461673 50461673 G A SIGLEC11 Silent p.T506T 0.05 TCGA-G6-A8L8-01 19 51918683 51918683 T - SIGLEC10 Frame_Shift_Del p.N361Tfs*30 0.28 TCGA-G6-A8L8-01 1 103404627 103404627 C T COL11A1 Silent p.P1134P 0.06 TCGA-G6-A8L8-01 1 109807814 109807814 A T CELSR2 Missense_Mutation p.I1870F 0.60 deleterious(0.03) benign(0.189) TCGA-G6-A8L8-01 1 151137615 151137615 C A LYSMD1 Silent p.L40L 0.48 TCGA-G6-A8L8-01 1 157667094 157667094 G A FCRL3 Missense_Mutation p.S227F 0.39 tolerated(0.09) possibly_damaging(0.861) TCGA-G6-A8L8-01 1 16957459 16957459 G A CROCCP2 RNA 0.21 TCGA-G6-A8L8-01 1 183543708 183543708 T G NCF2 Missense_Mutation p.K139Q 0.39 tolerated(0.06) benign(0.001) TCGA-G6-A8L8-01 1 201352301 201352301 A C LAD1 Silent p.T429T 0.36 TCGA-G6-A8L8-01 1 208084352 208084352 A T CD34 Nonsense_Mutation p.L25* 0.42 TCGA-G6-A8L8-01 1 43632510 43632510 G C EBNA1BP2 Missense_Mutation p.Q287E 0.53 tolerated(0.44) benign(0.138) TCGA-G6-A8L8-01 1 54605185 54605193 TCACGAAGT CCCCAAAG CDCP2 Missense_Mutation 0.61 TCGA-G6-A8L8-01 1 75036964 75036964 C T C1orf173 Missense_Mutation p.G1477E 0.26 tolerated(0.49) benign(0.024) TCGA-G6-A8L8-01 20 44879984 44879984 G A CDH22 5'UTR 0.33 TCGA-G6-A8L8-01 20 52601912 52601912 C T BCAS1 Missense_Mutation p.V352M 0.37 deleterious(0.01) benign(0.191) TCGA-G6-A8L8-01 20 6093174 6093174 A T FERMT1 Missense_Mutation p.I161N 0.32 tolerated(0.5) possibly_damaging(0.47) TCGA-G6-A8L8-01 21 47423619 47423619 T C COL6A1 Missense_Mutation p.Y927H 0.42 tolerated(0.05) probably_damaging(0.959) TCGA-G6-A8L8-01 22 31529169 31529169 G A INPP5J Missense_Mutation p.R392H 0.05 tolerated(0.12) benign(0.011) TCGA-G6-A8L8-01 22 36877629 36877629 G A TXN2 5'UTR 0.38 TCGA-G6-A8L8-01 22 42464567 42464567 C G NAGA Missense_Mutation p.G10R 0.10 tolerated(0.31) benign(0.078) TCGA-G6-A8L8-01 2 175436850 175436850 G C WIPF1 Missense_Mutation p.T228S 0.36 tolerated(0.68) benign(0) TCGA-G6-A8L8-01 2 178417346 178417346 G A TTC30B Missense_Mutation p.S49L 0.06 deleterious(0) probably_damaging(0.998) TCGA-G6-A8L8-01 2 210834493 210834493 C T UNC80 Nonsense_Mutation p.R2604* 0.45 TCGA-G6-A8L8-01 2 220422661 220422661 C G OBSL1 Missense_Mutation p.G1225A 0.18 deleterious(0) probably_damaging(1) TCGA-G6-A8L8-01 2 228147080 228147080 G - COL4A3 Splice_Site p.X830_splice 0.21 TCGA-G6-A8L8-01 2 239007020 239007020 C T SCLY 3'UTR 0.27 TCGA-G6-A8L8-01 2 27701003 27701003 T G IFT172 Silent p.S342S 0.31 TCGA-G6-A8L8-01 2 42990272 42990272 G C OXER1 Missense_Mutation p.L350V 0.39 deleterious(0) probably_damaging(0.998) TCGA-G6-A8L8-01 3 10191524 10191524 G T VHL Nonsense_Mutation p.E173* 0.63 TCGA-G6-A8L8-01 3 10334703 10334703 C T GHRL 5'Flank 0.75 TCGA-G6-A8L8-01 3 122254753 122254753 A G PARP9 Intron 0.22 TCGA-G6-A8L8-01 3 3136993 3136993 C A IL5RA Missense_Mutation p.G282V 0.66 deleterious(0) possibly_damaging(0.781) TCGA-G6-A8L8-01 3 37368161 37368161 A G GOLGA4 Missense_Mutation p.Y1617C 0.52 benign(0.001) TCGA-G6-A8L8-01 3 52643741 52643741 G A PBRM1 Nonsense_Mutation p.Q719* 0.61 TCGA-G6-A8L8-01 3 72957640 72957640 T - GXYLT2 Frame_Shift_Del p.F134Lfs*16 0.32 TCGA-G6-A8L8-01 3 99514029 99514029 G C COL8A1 Missense_Mutation p.K428N 0.36 deleterious(0.01) unknown(0) TCGA-G6-A8L8-01 3 9987987 9987987 T C PRRT3 Missense_Mutation p.D957G 0.05 deleterious(0.01) benign(0) TCGA-G6-A8L8-01 4 166418783 166418783 T - CPE 3'UTR 0.29 TCGA-G6-A8L8-01 4 1816167 1816167 G T LETM1 Missense_Mutation p.A735E 0.25 tolerated(0.24) unknown(0) TCGA-G6-A8L8-01 4 1816168 1816168 C G LETM1 Missense_Mutation p.A735P 0.24 tolerated(0.08) unknown(0) TCGA-G6-A8L8-01 4 1816169 1816169 G A LETM1 Silent p.V734V 0.25 TCGA-G6-A8L8-01 5 126792911 126792911 T C MEGF10 Silent p.P1108P 0.36 TCGA-G6-A8L8-01 5 140801885 140801885 G T PCDHGA11 Missense_Mutation p.G364V 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G6-A8L8-01 5 154317715 154317715 A G GEMIN5 5'UTR 0.36 TCGA-G6-A8L8-01 5 78407722 78407722 G A BHMT Missense_Mutation p.G5E 0.39 tolerated_low_confidence(0.17) benign(0.001) TCGA-G6-A8L8-01 5 79783833 79783833 T A FAM151B 5'UTR 0.41 TCGA-G6-A8L8-01 5 83356228 83356228 G A EDIL3 Missense_Mutation p.T343M 0.34 deleterious(0.04) probably_damaging(0.996) TCGA-G6-A8L8-01 6 153043343 153043343 C T MYCT1 Silent p.P221P 0.69 TCGA-G6-A8L8-01 6 17514130 17514130 A T CAP2 Missense_Mutation p.E194V 0.31 deleterious(0.01) possibly_damaging(0.794) TCGA-G6-A8L8-01 6 29142121 29142121 A C OR2J2 Missense_Mutation p.K237Q 0.39 deleterious(0) possibly_damaging(0.881) TCGA-G6-A8L8-01 6 29640857 29640857 T G ZFP57 Missense_Mutation p.Q344P 0.39 deleterious(0) probably_damaging(0.921) TCGA-G6-A8L8-01 6 55120066 55120066 G C HCRTR2 Missense_Mutation p.V179L 0.35 tolerated(0.28) benign(0.075) TCGA-G6-A8L8-01 6 55264027 55264027 A G GFRAL Silent p.K334K 0.11 TCGA-G6-A8L8-01 7 100349508 100349508 C T ZAN Missense_Mutation p.P594S 0.50 probably_damaging(0.998) TCGA-G6-A8L8-01 7 102669851 102669851 C A FBXL13 Missense_Mutation p.L5F 0.15 deleterious(0) probably_damaging(0.986) TCGA-G6-A8L8-01 7 155251392 155251392 G A EN2 Missense_Mutation p.S107N 0.48 tolerated(0.46) benign(0.003) TCGA-G6-A8L8-01 7 18875123 18875123 T - HDAC9 Frame_Shift_Del p.Y835Mfs*39 0.25 TCGA-G6-A8L8-01 7 21726822 21726822 C T DNAH11 Silent p.A1916A 0.41 TCGA-G6-A8L8-01 7 31378835 31378835 C T NEUROD6 Silent p.Q16Q 0.41 TCGA-G6-A8L8-01 7 99696703 99696703 G A MCM7 Silent p.P175P 0.32 TCGA-G6-A8L8-01 8 110465066 110465066 T C PKHD1L1 Silent p.D2209D 0.35 TCGA-G6-A8L8-01 8 124054436 124054436 C G DERL1 5'UTR 0.45 TCGA-G6-A8L8-01 8 144660509 144660510 - CCGGC NAPRT1 5'UTR 0.26 TCGA-G6-A8L8-01 8 144732986 144732986 G A ZNF623 Missense_Mutation p.G315E 0.45 deleterious(0) probably_damaging(0.999) TCGA-G6-A8L8-01 8 56863059 56863059 A C LYN Missense_Mutation p.K109T 0.33 deleterious(0.05) benign(0.23) TCGA-G6-A8L8-01 8 94747592 94747592 T G RBM12B Missense_Mutation p.Q349H 0.40 tolerated(0.54) probably_damaging(0.998) TCGA-G6-A8L8-01 9 103055282 103055282 A - INVS Frame_Shift_Del p.K916Rfs*27 0.28 TCGA-G6-A8L8-01 9 115449873 115449873 T A INIP Missense_Mutation p.D87V 0.43 deleterious(0.04) probably_damaging(0.979) TCGA-G6-A8L8-01 9 115449874 115449874 C G INIP Missense_Mutation p.D87H 0.43 deleterious(0) probably_damaging(0.984) TCGA-G6-A8L8-01 9 120466776 120466776 G A TLR4 Missense_Mutation p.G9E 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.691) TCGA-G6-A8L8-01 9 133944419 133944419 T - LAMC3 Frame_Shift_Del p.S958Pfs*63 0.26 TCGA-G6-A8L8-01 9 79121711 79121711 A G GCNT1 3'UTR 0.33 TCGA-G6-A8L8-01 9 94172653 94172653 G C NFIL3 Missense_Mutation p.L122V 0.14 deleterious(0) probably_damaging(0.986) TCGA-G6-A8L8-01 X 106061915 106061915 T C TBC1D8B Silent p.D51D 0.41 TCGA-G6-A8L8-01 X 18606098 18606098 C T CDKL5 Silent p.D193D 0.39 TCGA-G6-A8L8-01 X 46332895 46332895 A G KRBOX4 3'UTR 0.39 TCGA-G6-A8L8-01 X 49081336 49081336 A T CACNA1F Missense_Mutation p.F599L 0.32 tolerated(0.06) probably_damaging(0.947) TCGA-G6-A8L8-01 X 99840248 99840248 G T TNMD Missense_Mutation p.K23N 0.40 deleterious(0.02) benign(0.42) TCGA-GK-A6C7-01 10 102796272 102796272 C T SFXN3 Missense_Mutation p.T158I 0.07 deleterious(0) possibly_damaging(0.734) TCGA-GK-A6C7-01 10 30318362 30318362 C T KIAA1462 Missense_Mutation p.E239K 0.08 tolerated(0.1) possibly_damaging(0.52) TCGA-GK-A6C7-01 10 72360495 72360495 C T PRF1 Missense_Mutation p.R55H 0.33 tolerated(0.06) benign(0.041) TCGA-GK-A6C7-01 10 73520618 73520618 C G C10orf54 Intron 0.29 TCGA-GK-A6C7-01 10 95553034 95553034 T G LGI1 Silent p.P255P 0.29 TCGA-GK-A6C7-01 10 97917592 97917592 A G ZNF518A RNA 0.08 TCGA-GK-A6C7-01 10 98745430 98745430 T A C10orf12 3'UTR 0.20 TCGA-GK-A6C7-01 11 105880728 105880728 G T MSANTD4 Nonsense_Mutation p.S191* 0.24 TCGA-GK-A6C7-01 11 35828045 35828045 C T TRIM44 3'UTR 0.28 TCGA-GK-A6C7-01 11 55904318 55904318 T C OR8J3 Missense_Mutation p.R293G 0.33 deleterious(0) possibly_damaging(0.756) TCGA-GK-A6C7-01 11 59225019 59225019 G A OR4D6 Missense_Mutation p.E196K 0.19 deleterious(0.01) possibly_damaging(0.672) TCGA-GK-A6C7-01 11 64880796 64880796 G A TM7SF2 Missense_Mutation p.A137T 0.10 tolerated(0.06) benign(0.055) TCGA-GK-A6C7-01 11 65790485 65790485 A G CATSPER1 Missense_Mutation p.F422L 0.05 tolerated(0.56) benign(0.004) TCGA-GK-A6C7-01 11 6703615 6703615 T C MRPL17 Missense_Mutation p.K88E 0.16 deleterious(0) probably_damaging(1) TCGA-GK-A6C7-01 11 7690532 7690532 C A CYB5R2 Nonsense_Mutation p.E98* 0.34 TCGA-GK-A6C7-01 12 101603594 101603594 C G SLC5A8 Silent p.V11V 0.28 TCGA-GK-A6C7-01 12 104100702 104100702 G C STAB2 Missense_Mutation p.G1377R 0.22 deleterious(0.02) possibly_damaging(0.847) TCGA-GK-A6C7-01 12 117768771 117768771 C A NOS1 Missense_Mutation p.R35L 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GK-A6C7-01 12 49443616 49443616 C A KMT2D Missense_Mutation p.R1252L 0.18 probably_damaging(0.915) TCGA-GK-A6C7-01 12 53203210 53203210 C A KRT4 Missense_Mutation p.S264I 0.22 deleterious(0.02) possibly_damaging(0.499) TCGA-GK-A6C7-01 12 56531816 56531816 A T ESYT1 Missense_Mutation p.K745N 0.25 tolerated(0.25) possibly_damaging(0.493) TCGA-GK-A6C7-01 13 36905636 36905636 G A SPG20 Missense_Mutation p.A303V 0.28 deleterious(0.01) benign(0.039) TCGA-GK-A6C7-01 13 41345193 41345193 G A MRPS31 Missense_Mutation p.S27L 0.23 tolerated_low_confidence(0.1) benign(0.031) TCGA-GK-A6C7-01 13 58240916 58240916 G A PCDH17 Missense_Mutation p.E916K 0.24 tolerated(0.2) possibly_damaging(0.515) TCGA-GK-A6C7-01 14 102549916 102549916 T C HSP90AA1 Missense_Mutation p.K607E 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-GK-A6C7-01 14 24601533 24601533 G C FITM1 Missense_Mutation p.R127P 0.21 tolerated(0.07) possibly_damaging(0.77) TCGA-GK-A6C7-01 14 24658926 24658926 C A TM9SF1 Missense_Mutation p.A506S 0.06 deleterious(0) possibly_damaging(0.474) TCGA-GK-A6C7-01 14 31344177 31344177 C T COCH Silent p.L11L 0.16 TCGA-GK-A6C7-01 14 51721243 51721243 T - TMX1 3'UTR 0.24 TCGA-GK-A6C7-01 14 71199592 71199592 G A MAP3K9 Silent p.L846L 0.27 TCGA-GK-A6C7-01 14 93762438 93762438 G T BTBD7 5'UTR 0.19 TCGA-GK-A6C7-01 15 43900280 43900280 G A STRC Silent p.L1227L 0.27 TCGA-GK-A6C7-01 15 51839510 51839510 A T DMXL2 Silent p.S221S 0.20 TCGA-GK-A6C7-01 15 63673867 63673867 T - CA12 Frame_Shift_Del p.K18Rfs*10 0.17 TCGA-GK-A6C7-01 15 73616506 73616506 G T HCN4 Missense_Mutation p.F689L 0.31 deleterious(0.01) unknown(0) TCGA-GK-A6C7-01 16 20803573 20803573 A C ACSM3 Silent p.P490P 0.31 TCGA-GK-A6C7-01 16 21728238 21728238 C T OTOA Missense_Mutation p.A500V 0.22 tolerated(0.05) benign(0.024) TCGA-GK-A6C7-01 16 21771945 21771945 C G OTOA 3'UTR 0.33 TCGA-GK-A6C7-01 16 2817115 2817115 C T SRRM2 Missense_Mutation p.P2196S 0.27 probably_damaging(0.998) TCGA-GK-A6C7-01 16 70954653 70954653 C T HYDIN Silent p.L2542L 0.14 TCGA-GK-A6C7-01 16 71683798 71683798 T G PHLPP2 Missense_Mutation p.E989D 0.26 tolerated(1) probably_damaging(0.987) TCGA-GK-A6C7-01 16 84214719 84214720 - G TAF1C Frame_Shift_Ins p.L439Pfs*114 0.26 TCGA-GK-A6C7-01 16 87873322 87873322 C A SLC7A5 Nonsense_Mutation p.E309* 0.28 TCGA-GK-A6C7-01 16 88786581 88786581 G T PIEZO1 Silent p.A2020A 0.22 TCGA-GK-A6C7-01 17 11645606 11645606 G T DNAH9 Missense_Mutation p.L2029F 0.32 probably_damaging(1) TCGA-GK-A6C7-01 17 40269088 40269088 C A KAT2A Missense_Mutation p.V577F 0.31 deleterious(0) probably_damaging(0.993) TCGA-GK-A6C7-01 17 56676536 56676536 C A TEX14 Nonsense_Mutation p.E730* 0.22 TCGA-GK-A6C7-01 17 7139646 7139646 C G PHF23 Silent p.R200R 0.27 TCGA-GK-A6C7-01 17 73234753 73234753 A T GGA3 Missense_Mutation p.L681M 0.31 deleterious(0) probably_damaging(1) TCGA-GK-A6C7-01 17 8492402 8492402 C T MYH10 Missense_Mutation p.C176Y 0.08 possibly_damaging(0.687) TCGA-GK-A6C7-01 18 12674652 12674652 C T CEP76 Missense_Mutation p.G575D 0.30 deleterious(0.01) possibly_damaging(0.884) TCGA-GK-A6C7-01 18 19405569 19405569 A T MIB1 Intron 0.30 TCGA-GK-A6C7-01 18 54444064 54444064 A - WDR7 Frame_Shift_Del p.D967Afs*13 0.19 TCGA-GK-A6C7-01 18 57103121 57103121 G A CCBE1 3'UTR 0.07 TCGA-GK-A6C7-01 18 9954199 9954199 C G VAPA Missense_Mutation p.F292L 0.30 tolerated(0.24) unknown(0) TCGA-GK-A6C7-01 19 13879421 13879421 C A MRI1 Missense_Mutation p.F198L 0.18 deleterious(0.01) benign(0.139) TCGA-GK-A6C7-01 19 35505102 35505102 G A GRAMD1A Missense_Mutation p.D294N 0.25 tolerated(0.27) benign(0.171) TCGA-GK-A6C7-01 19 42315210 42315210 G A CEACAM3 Missense_Mutation p.E232K 0.14 deleterious(0.01) possibly_damaging(0.636) TCGA-GK-A6C7-01 19 44057611 44057611 G A XRCC1 Silent p.S181S 0.28 TCGA-GK-A6C7-01 19 45033490 45033490 G A CEACAM20 RNA 0.23 TCGA-GK-A6C7-01 19 49131482 49131482 C T SPHK2 Missense_Mutation p.L274F 0.22 deleterious(0) probably_damaging(1) TCGA-GK-A6C7-01 19 53958477 53958477 C T ZNF761 RNA 0.16 TCGA-GK-A6C7-01 19 54967563 54967563 G A LENG8 Missense_Mutation p.R455H 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-GK-A6C7-01 1 120436917 120436917 C T ADAM30 Silent p.A681A 0.29 TCGA-GK-A6C7-01 1 162336912 162336912 G T RP11-565P22.6 Silent p.T78T 0.17 TCGA-GK-A6C7-01 1 16748439 16748439 G A SPATA21 Missense_Mutation p.P21L 0.11 deleterious(0.03) possibly_damaging(0.808) TCGA-GK-A6C7-01 1 1756863 1756863 C A GNB1 Missense_Mutation p.E10D 0.50 deleterious(0.04) benign(0.024) TCGA-GK-A6C7-01 1 179820223 179820223 G T TOR1AIP2 Missense_Mutation p.P104T 0.29 tolerated_low_confidence(0.51) benign(0.197) TCGA-GK-A6C7-01 1 197070950 197070950 T C ASPM Silent p.L2477L 0.16 TCGA-GK-A6C7-01 1 214815697 214815697 T G CENPF Missense_Mutation p.V1339G 0.21 benign(0.436) TCGA-GK-A6C7-01 1 233372596 233372596 G A PCNXL2 Missense_Mutation p.P785S 0.29 deleterious(0.04) benign(0.206) TCGA-GK-A6C7-01 1 236760229 236760229 C T HEATR1 Silent p.L217L 0.37 TCGA-GK-A6C7-01 1 25153536 25153536 A G CLIC4 Missense_Mutation p.N115S 0.05 tolerated(0.09) benign(0.005) TCGA-GK-A6C7-01 1 27092815 27092815 C - ARID1A Frame_Shift_Del p.P947Hfs*21 0.31 TCGA-GK-A6C7-01 1 36769714 36769714 A T THRAP3 3'UTR 0.38 TCGA-GK-A6C7-01 1 47606502 47606502 C - CYP4A22 Frame_Shift_Del p.P83Qfs*23 0.11 TCGA-GK-A6C7-01 1 47746867 47746867 T C STIL Silent p.Q421Q 0.24 TCGA-GK-A6C7-01 1 63999881 63999881 A C EFCAB7 Missense_Mutation p.L266F 0.28 tolerated(0.15) benign(0.001) TCGA-GK-A6C7-01 1 92733559 92733559 C A GLMN Nonsense_Mutation p.E337* 0.21 TCGA-GK-A6C7-01 20 33862202 33862202 G A MMP24 Silent p.R576R 0.07 TCGA-GK-A6C7-01 22 31479249 31479249 C T SMTN Missense_Mutation p.A2V 0.25 deleterious(0.03) possibly_damaging(0.705) TCGA-GK-A6C7-01 22 32016686 32016686 T AC PISD Frame_Shift_Ins p.V253Cfs*16 0.27 TCGA-GK-A6C7-01 2 135965019 135965019 C T ZRANB3 Silent p.K998K 0.25 TCGA-GK-A6C7-01 2 168099176 168099176 C T XIRP2 Missense_Mutation p.T425I 0.03 benign(0.022) TCGA-GK-A6C7-01 2 179428521 179428521 A G TTN Silent p.A27446A 0.22 TCGA-GK-A6C7-01 2 198950816 198950816 C T PLCL1 Missense_Mutation p.R859C 0.06 deleterious(0) probably_damaging(0.953) TCGA-GK-A6C7-01 2 198953708 198953708 A - PLCL1 Frame_Shift_Del p.D949Tfs*20 0.26 TCGA-GK-A6C7-01 2 20113406 20113406 C A WDR35 Missense_Mutation p.W1153C 0.23 deleterious(0) probably_damaging(0.998) TCGA-GK-A6C7-01 2 203242112 203242112 A T BMPR2 5'UTR 0.11 TCGA-GK-A6C7-01 2 238999925 238999925 T G SCLY Intron 0.25 TCGA-GK-A6C7-01 2 241831124 241831124 A G C2orf54 Missense_Mutation p.S191P 0.23 tolerated(0.08) benign(0.272) TCGA-GK-A6C7-01 2 44549975 44549975 T C PREPL Missense_Mutation p.I639V 0.34 deleterious(0.01) possibly_damaging(0.587) TCGA-GK-A6C7-01 2 99162538 99162538 T A INPP4A Splice_Site p.X352_splice 0.26 TCGA-GK-A6C7-01 3 134090175 134090175 A G AMOTL2 Missense_Mutation p.I34T 0.38 deleterious(0) probably_damaging(0.995) TCGA-GK-A6C7-01 3 194080957 194080957 G C LRRC15 Missense_Mutation p.N278K 0.06 deleterious(0.03) benign(0.062) TCGA-GK-A6C7-01 3 52651376 52651376 T A PBRM1 Missense_Mutation p.N574Y 0.51 deleterious(0) probably_damaging(0.993) TCGA-GK-A6C7-01 4 175898844 175898844 G A ADAM29 Missense_Mutation p.R723H 0.04 tolerated(0.14) benign(0) TCGA-GK-A6C7-01 4 46125969 46125969 C T GABRG1 5'UTR 0.27 TCGA-GK-A6C7-01 4 74277721 74277721 C G ALB Missense_Mutation p.A241G 0.19 deleterious(0.02) possibly_damaging(0.457) TCGA-GK-A6C7-01 4 76570645 76570646 - T G3BP2 Frame_Shift_Ins p.M473Nfs*51 0.25 TCGA-GK-A6C7-01 5 140208520 140208520 A C PCDHA6 Missense_Mutation p.N282H 0.43 deleterious_low_confidence(0.04) benign(0.064) TCGA-GK-A6C7-01 5 140594130 140594130 G C PCDHB13 Missense_Mutation p.E145D 0.40 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-GK-A6C7-01 5 140626616 140626616 G T PCDHB15 Silent p.L490L 0.32 TCGA-GK-A6C7-01 5 140626617 140626617 C T PCDHB15 Silent p.L491L 0.30 TCGA-GK-A6C7-01 5 483519 483519 G A SLC9A3 Silent p.Y337Y 0.43 TCGA-GK-A6C7-01 5 68581289 68581289 G A CCDC125 Missense_Mutation p.P369S 0.40 tolerated(0.77) benign(0.002) TCGA-GK-A6C7-01 5 74998453 74998454 - A POC5 Frame_Shift_Ins p.D164* 0.16 TCGA-GK-A6C7-01 6 111527826 111527826 A - SLC16A10 Frame_Shift_Del p.N327Ifs*30 0.15 TCGA-GK-A6C7-01 6 119341300 119341300 G T FAM184A Missense_Mutation p.T392N 0.24 deleterious(0.04) benign(0.14) TCGA-GK-A6C7-01 6 31644830 31644831 - T LY6G5C Frame_Shift_Ins p.R120Pfs*22 0.18 TCGA-GK-A6C7-01 7 102112937 102112937 G T LRWD1 Missense_Mutation p.W524L 0.33 deleterious(0) probably_damaging(0.998) TCGA-GK-A6C7-01 7 112407468 112407468 A G TMEM168 Silent p.T626T 0.05 TCGA-GK-A6C7-01 7 123332528 123332528 G A WASL Missense_Mutation p.A407V 0.24 tolerated(0.12) benign(0.285) TCGA-GK-A6C7-01 7 127013756 127013756 G A ZNF800 Missense_Mutation p.S545L 0.36 deleterious(0) possibly_damaging(0.874) TCGA-GK-A6C7-01 7 150217303 150217309 ATCAGCC TT GIMAP7 Frame_Shift_Del p.I81Lfs*62 0.25 TCGA-GK-A6C7-01 7 31683046 31683046 C T CCDC129 Silent p.L714L 0.27 TCGA-GK-A6C7-01 7 72863969 72863969 G T BAZ1B Missense_Mutation p.L1211M 0.11 tolerated(0.11) probably_damaging(1) TCGA-GK-A6C7-01 7 82586097 82586097 C T PCLO Missense_Mutation p.G1391E 0.06 unknown(0) TCGA-GK-A6C7-01 8 131793006 131793006 C T ADCY8 Missense_Mutation p.R1129Q 0.26 tolerated(0.06) possibly_damaging(0.553) TCGA-GK-A6C7-01 8 144941708 144941708 G A EPPK1 Missense_Mutation p.P1905L 0.18 probably_damaging(0.947) TCGA-GK-A6C7-01 8 145027974 145027974 C A PLEC 5'Flank 0.35 TCGA-GK-A6C7-01 8 22059407 22059407 C A BMP1 Missense_Mutation p.F733L 0.33 deleterious(0.03) benign(0.35) TCGA-GK-A6C7-01 8 38124606 38124606 T C PPAPDC1B Intron 0.22 TCGA-GK-A6C7-01 9 116810200 116810209 ACCAGTCCCG - ZNF618 Frame_Shift_Del p.Q333Rfs*6 0.15 TCGA-GK-A6C7-01 9 71398246 71398246 T C FAM122A 3'UTR 0.24 TCGA-GK-A6C7-01 9 88590057 88590057 G A NAA35 Missense_Mutation p.M204I 0.34 tolerated(0.12) benign(0) TCGA-GK-A6C7-01 9 88590058 88590058 C T NAA35 Nonsense_Mutation p.Q205* 0.34 TCGA-GK-A6C7-01 9 95840272 95840272 A G SUSD3 Missense_Mutation p.N141S 0.09 tolerated(0.2) benign(0.004) TCGA-GK-A6C7-01 9 99607212 99607212 T C ZNF782 Silent p.R34R 0.23 TCGA-GK-A6C7-01 X 107400114 107400114 A G COL4A6 3'UTR 0.06 TCGA-GK-A6C7-01 X 151127128 151127128 C A GABRE Intron 0.09 TCGA-GK-A6C7-01 X 57619681 57619681 C A ZXDB Nonsense_Mutation p.C400* 0.23 TCGA-GK-A6C7-01 X 68382601 68382601 A C PJA1 Missense_Mutation p.L161V 0.25 tolerated(0.16) benign(0.005) TCGA-GK-A6C7-01 X 69563737 69563737 G A KIF4A Missense_Mutation p.D446N 0.26 deleterious(0.04) benign(0.144) TCGA-MM-A563-01 10 128936100 128936100 G T FAM196A 3'UTR 0.28 TCGA-MM-A563-01 10 50081681 50081681 G T WDFY4 Missense_Mutation p.R2296L 0.28 deleterious(0) possibly_damaging(0.852) TCGA-MM-A563-01 11 124310842 124310842 G A OR8B8 Missense_Mutation p.T47I 0.28 tolerated_low_confidence(0.75) benign(0.005) TCGA-MM-A563-01 11 3720333 3720333 A T NUP98 Missense_Mutation p.C1330S 0.28 deleterious(0) probably_damaging(0.995) TCGA-MM-A563-01 11 3720335 3720335 G C NUP98 Missense_Mutation p.A1329G 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-MM-A563-01 11 4968016 4968016 G T OR51A4 Missense_Mutation p.F105L 0.04 deleterious(0.01) possibly_damaging(0.651) TCGA-MM-A563-01 11 4976629 4976629 G T OR51A2 Missense_Mutation p.F105L 0.63 deleterious(0.01) possibly_damaging(0.651) TCGA-MM-A563-01 11 67191815 67191815 G T CARNS1 Missense_Mutation p.V866L 0.30 tolerated(0.08) benign(0.005) TCGA-MM-A563-01 11 74521336 74521336 A G RNF169 Silent p.K228K 0.41 TCGA-MM-A563-01 12 132396635 132396635 G T ULK1 Splice_Site p.X366_splice 0.28 TCGA-MM-A563-01 12 26752974 26752974 A C ITPR2 Missense_Mutation p.N1249K 0.26 deleterious(0) probably_damaging(1) TCGA-MM-A563-01 12 49397570 49397570 C T PRKAG1 Missense_Mutation p.V234I 0.23 tolerated(0.19) benign(0.14) TCGA-MM-A563-01 12 56956303 56956303 A T RBMS2 Missense_Mutation p.N57Y 0.30 deleterious(0) probably_damaging(0.962) TCGA-MM-A563-01 14 105407109 105407109 C T AHNAK2 Missense_Mutation p.M4893I 0.43 benign(0.195) TCGA-MM-A563-01 14 93760444 93760444 T C BTBD7 Missense_Mutation p.R308G 0.06 tolerated(0.1) benign(0.085) TCGA-MM-A563-01 15 28228573 28228573 A - OCA2 Frame_Shift_Del p.F474Sfs*25 0.20 TCGA-MM-A563-01 15 45408841 45408842 CC - DUOXA2 Frame_Shift_Del p.L157Gfs*8 0.23 TCGA-MM-A563-01 16 11002898 11002898 C G CIITA Missense_Mutation p.S890R 0.30 tolerated(0.08) possibly_damaging(0.782) TCGA-MM-A563-01 16 23646214 23646214 A C PALB2 Nonsense_Mutation p.Y551* 0.29 TCGA-MM-A563-01 16 2817218 2817218 G A SRRM2 Missense_Mutation p.S2230N 0.34 probably_damaging(0.985) TCGA-MM-A563-01 17 1584261 1584261 G C PRPF8 Nonsense_Mutation p.Y318* 0.29 TCGA-MM-A563-01 17 422539 422539 C G VPS53 Splice_Site p.X777_splice 0.31 TCGA-MM-A563-01 17 56448337 56448337 T C RNF43 Missense_Mutation p.I104V 0.39 tolerated(0.59) benign(0.279) TCGA-MM-A563-01 17 7216909 7216909 A G GPS2 Silent p.Y204Y 0.32 TCGA-MM-A563-01 17 8648035 8648035 C T CCDC42 5'UTR 0.36 TCGA-MM-A563-01 18 2732468 2732468 C A SMCHD1 Nonsense_Mutation p.S1085* 0.27 TCGA-MM-A563-01 19 10071079 10071079 G A COL5A3 3'UTR 0.23 TCGA-MM-A563-01 19 20307892 20307892 G C ZNF486 Missense_Mutation p.G125R 0.33 deleterious(0.04) possibly_damaging(0.784) TCGA-MM-A563-01 19 43268175 43268175 A C PSG8 Missense_Mutation p.L108R 0.23 deleterious(0.01) benign(0.274) TCGA-MM-A563-01 1 144855761 144855761 G C PDE4DIP Missense_Mutation p.I2264M 0.20 tolerated(0.19) benign(0.382) TCGA-MM-A563-01 1 146696729 146696729 G A FMO5 Intron 0.27 TCGA-MM-A563-01 1 150049751 150049751 T G VPS45 Missense_Mutation p.V194G 0.39 tolerated(0.33) benign(0.148) TCGA-MM-A563-01 1 179013001 179013001 G A FAM20B Missense_Mutation p.V7I 0.29 tolerated(0.09) benign(0.054) TCGA-MM-A563-01 1 203022910 203022910 G T PPFIA4 Missense_Mutation p.M44I 0.26 tolerated(0.1) benign(0) TCGA-MM-A563-01 1 204085744 204085744 G A SOX13 Missense_Mutation p.M176I 0.28 deleterious(0.01) possibly_damaging(0.596) TCGA-MM-A563-01 1 233750251 233750251 A C KCNK1 Missense_Mutation p.S112R 0.26 deleterious(0) probably_damaging(0.957) TCGA-MM-A563-01 1 245847630 245847630 A C KIF26B Missense_Mutation p.Y785S 0.30 deleterious(0) unknown(0) TCGA-MM-A563-01 1 53504719 53504719 G A SCP2 Splice_Site p.X490_splice 0.24 TCGA-MM-A563-01 22 40706974 40706974 C G TNRC6B Missense_Mutation p.S1471C 0.38 deleterious(0.02) possibly_damaging(0.806) TCGA-MM-A563-01 22 46368049 46368049 G A WNT7B Intron 0.80 TCGA-MM-A563-01 22 51016298 51016298 G - CPT1B Frame_Shift_Del p.P16Qfs*13 0.27 TCGA-MM-A563-01 2 136107751 136107751 A C ZRANB3 Missense_Mutation p.Y132D 0.40 deleterious(0) probably_damaging(1) TCGA-MM-A563-01 2 143718244 143718244 G A KYNU Missense_Mutation p.G212R 0.27 deleterious(0) probably_damaging(0.999) TCGA-MM-A563-01 2 201440050 201440050 G C SGOL2 Missense_Mutation p.Q1216H 0.30 deleterious(0) probably_damaging(0.969) TCGA-MM-A563-01 2 210858132 210858132 C A UNC80 Missense_Mutation p.P3098T 0.19 probably_damaging(0.996) TCGA-MM-A563-01 2 74724900 74724901 - T LBX2 3'UTR 0.33 TCGA-MM-A563-01 2 96809980 96809980 C G DUSP2 Missense_Mutation p.G215R 0.35 deleterious(0.01) probably_damaging(0.93) TCGA-MM-A563-01 3 120673869 120673869 C A STXBP5L Missense_Mutation p.T91K 0.32 deleterious(0.01) benign(0.119) TCGA-MM-A563-01 3 151047266 151047266 C T P2RY13 Intron 0.36 TCGA-MM-A563-01 3 48336079 48336079 A C NME6 3'UTR 0.40 TCGA-MM-A563-01 4 13378230 13378230 T C RAB28 Missense_Mutation p.Q171R 0.36 tolerated(0.54) benign(0.225) TCGA-MM-A563-01 4 3952912 3952912 G A FAM86EP Intron 0.25 TCGA-MM-A563-01 4 87968461 87968461 G - AFF1 Frame_Shift_Del p.V260Sfs*58 0.30 TCGA-MM-A563-01 5 83402504 83402504 C A EDIL3 Missense_Mutation p.W205L 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-MM-A563-01 6 159646657 159646657 G T FNDC1 Silent p.L325L 0.38 TCGA-MM-A563-01 7 157178340 157178341 - T DNAJB6 Intron 0.16 TCGA-MM-A563-01 8 124340806 124340806 C G ATAD2 Missense_Mutation p.R1164S 0.28 tolerated(0.13) benign(0.15) TCGA-MM-A563-01 9 131755970 131755970 C G NUP188 Missense_Mutation p.T1005S 0.06 tolerated(0.39) benign(0.278) TCGA-MM-A563-01 X 117810000 117810000 C A DOCK11 Silent p.A1767A 0.55 TCGA-MM-A563-01 X 127185956 127185956 C A ACTRT1 Missense_Mutation p.G77V 0.54 deleterious(0) probably_damaging(0.993) TCGA-MM-A564-01 10 115609027 115609027 C A DCLRE1A Missense_Mutation p.D613Y 0.27 deleterious(0) possibly_damaging(0.56) TCGA-MM-A564-01 10 121565931 121565931 A T INPP5F Missense_Mutation p.D460V 0.22 deleterious(0) probably_damaging(0.999) TCGA-MM-A564-01 10 88703701 88703701 G C MMRN2 Silent p.A280A 0.27 TCGA-MM-A564-01 11 19259552 19259552 G C E2F8 Missense_Mutation p.P48R 0.39 deleterious(0.04) probably_damaging(0.965) TCGA-MM-A564-01 11 2334939 2334939 G C TSPAN32 Missense_Mutation p.G137A 0.22 tolerated(0.12) possibly_damaging(0.472) TCGA-MM-A564-01 11 55579376 55579376 C A OR5L1 Missense_Mutation p.A145D 0.24 deleterious(0) benign(0.17) TCGA-MM-A564-01 11 6806294 6806294 G A OR2AG1 Missense_Mutation p.G9E 0.27 tolerated(0.28) benign(0.011) TCGA-MM-A564-01 11 6806295 6806295 A G OR2AG1 Silent p.G9G 0.27 TCGA-MM-A564-01 11 78381159 78381159 G A TENM4 Silent p.V2077V 0.03 TCGA-MM-A564-01 11 8938831 8938831 C A AKIP1 Intron 0.32 TCGA-MM-A564-01 12 133331464 133331464 G - ANKLE2 Frame_Shift_Del p.T146Mfs*18 0.16 TCGA-MM-A564-01 12 22824246 22824246 C A ETNK1 Missense_Mutation p.N336K 0.27 deleterious(0.02) probably_damaging(0.96) TCGA-MM-A564-01 12 23893942 23893942 C T SOX5 Silent p.R200R 0.16 TCGA-MM-A564-01 12 48142269 48142269 A C RAPGEF3 Missense_Mutation p.M404R 0.29 tolerated(0.42) benign(0.01) TCGA-MM-A564-01 12 51402271 51402271 A T SLC11A2 Silent p.I86I 0.34 TCGA-MM-A564-01 12 54966407 54966407 G A PDE1B Missense_Mutation p.S206N 0.27 tolerated(0.36) benign(0.003) TCGA-MM-A564-01 12 8374731 8374731 C T FAM90A1 Missense_Mutation p.R361Q 0.21 tolerated(0.16) benign(0.009) TCGA-MM-A564-01 12 93213220 93213220 A T EEA1 Nonsense_Mutation p.L531* 0.29 TCGA-MM-A564-01 14 20612258 20612258 C A OR4N5 Missense_Mutation p.R122S 0.29 deleterious(0) possibly_damaging(0.454) TCGA-MM-A564-01 14 24030507 24030508 GG - AP1G2 Frame_Shift_Del p.P664Sfs*10 0.29 TCGA-MM-A564-01 14 63447766 63447766 C T KCNH5 Missense_Mutation p.V256I 0.48 tolerated(0.38) benign(0.149) TCGA-MM-A564-01 14 64491855 64491855 T - SYNE2 Frame_Shift_Del p.F1990Lfs*7 0.16 TCGA-MM-A564-01 14 68038894 68038894 T C PLEKHH1 Missense_Mutation p.I543T 0.38 deleterious(0) benign(0.211) TCGA-MM-A564-01 15 48712959 48712959 G C FBN1 Missense_Mutation p.Q2582E 0.26 possibly_damaging(0.81) TCGA-MM-A564-01 15 65667559 65667559 G C IGDCC3 Silent p.S95S 0.31 TCGA-MM-A564-01 15 70346833 70346833 G T TLE3 Silent p.S593S 0.30 TCGA-MM-A564-01 16 1258118 1258118 C - CACNA1H Frame_Shift_Del p.K1089Rfs*255 0.25 TCGA-MM-A564-01 16 1397753 1397753 G A BAIAP3 Missense_Mutation p.E1021K 0.09 deleterious(0.02) benign(0.286) TCGA-MM-A564-01 16 16248742 16248742 G T ABCC6 Missense_Mutation p.S1343R 0.20 deleterious(0) benign(0.353) TCGA-MM-A564-01 16 19800185 19800185 C G IQCK Missense_Mutation p.L211V 0.31 deleterious(0.02) probably_damaging(0.949) TCGA-MM-A564-01 16 21811008 21811008 A - RP11-645C24.5 5'Flank 0.12 TCGA-MM-A564-01 16 22492432 22492432 T A snoU13 5'Flank 0.20 TCGA-MM-A564-01 16 2373579 2373579 C T ABCA3 Silent p.P186P 0.15 TCGA-MM-A564-01 16 27078892 27078892 C T C16orf82 RNA 0.10 TCGA-MM-A564-01 16 68057550 68057550 A G DDX28 5'UTR 0.39 TCGA-MM-A564-01 16 79632917 79632917 T G MAF Missense_Mutation p.T295P 0.29 deleterious(0) probably_damaging(1) TCGA-MM-A564-01 17 1629370 1629370 C T WDR81 Missense_Mutation p.R373W 0.29 deleterious(0) probably_damaging(1) TCGA-MM-A564-01 17 38068730 38068730 T - GSDMB Frame_Shift_Del p.I86Ffs*5 0.21 TCGA-MM-A564-01 17 40714864 40714864 C T COASY Missense_Mutation p.A104V 0.22 deleterious(0) probably_damaging(0.998) TCGA-MM-A564-01 17 73987705 73987705 G C TEN1 Splice_Site p.X84_splice 0.26 TCGA-MM-A564-01 17 79517699 79517699 A T C17orf70 Missense_Mutation p.I274N 0.33 deleterious(0) probably_damaging(0.951) TCGA-MM-A564-01 17 79639131 79639131 C T CCDC137 Silent p.V202V 0.23 TCGA-MM-A564-01 17 9490151 9490151 G C WDR16 Missense_Mutation p.S136T 0.40 tolerated(0.1) benign(0.394) TCGA-MM-A564-01 18 13068383 13068383 T C CEP192 Missense_Mutation p.V1595A 0.25 deleterious(0) probably_damaging(0.999) TCGA-MM-A564-01 19 12638690 12638690 C A ZNF564 Missense_Mutation p.D78Y 0.28 deleterious(0) benign(0.119) TCGA-MM-A564-01 19 13427954 13427954 G C CACNA1A Missense_Mutation p.N509K 0.23 possibly_damaging(0.859) TCGA-MM-A564-01 19 3207662 3207662 G A NCLN Silent p.L556L 0.25 TCGA-MM-A564-01 19 35749930 35749930 G A LSR Silent p.Q227Q 0.22 TCGA-MM-A564-01 19 41255505 41255505 A T C19orf54 Silent p.A68A 0.21 TCGA-MM-A564-01 19 42721009 42721009 C T DEDD2 Missense_Mutation p.E51K 0.22 tolerated(0.19) possibly_damaging(0.874) TCGA-MM-A564-01 19 55966435 55966435 T C ISOC2 Missense_Mutation p.Q169R 0.30 tolerated(0.35) benign(0.033) TCGA-MM-A564-01 19 57175760 57175760 C T ZNF835 Silent p.Q269Q 0.48 TCGA-MM-A564-01 1 11307892 11307892 T A MTOR Missense_Mutation p.E367V 0.32 tolerated(0.18) possibly_damaging(0.468) TCGA-MM-A564-01 1 117158823 117158823 C - IGSF3 Frame_Shift_Del p.N101Tfs*37 0.23 TCGA-MM-A564-01 1 120436753 120436753 T A ADAM30 Missense_Mutation p.K736I 0.24 tolerated(0.12) benign(0.027) TCGA-MM-A564-01 1 152079821 152079821 C T TCHH 3'UTR 0.21 TCGA-MM-A564-01 1 153234367 153234367 C - LOR 3'UTR 0.12 TCGA-MM-A564-01 1 181452830 181452830 G A CACNA1E 5'Flank 0.20 TCGA-MM-A564-01 1 190067381 190067381 G A BRINP3 Missense_Mutation p.P690S 0.45 tolerated(0.29) probably_damaging(0.996) TCGA-MM-A564-01 1 203192643 203192643 G C CHIT1 Missense_Mutation p.R154G 0.24 tolerated(0.06) possibly_damaging(0.868) TCGA-MM-A564-01 1 247902264 247902264 G C OR14K1 Missense_Mutation p.M116I 0.20 deleterious(0.01) possibly_damaging(0.575) TCGA-MM-A564-01 1 248844799 248844799 A T OR14I1 Missense_Mutation p.D269E 0.11 deleterious(0.01) possibly_damaging(0.775) TCGA-MM-A564-01 1 27332269 27332269 G - FAM46B 3'UTR 0.23 TCGA-MM-A564-01 1 6211168 6211168 G C CHD5 Missense_Mutation p.I306M 0.30 tolerated(0.13) benign(0.065) TCGA-MM-A564-01 1 68512860 68512860 C T DIRAS3 Missense_Mutation p.V41M 0.27 deleterious(0) probably_damaging(0.97) TCGA-MM-A564-01 1 75009589 75009589 G C TNNI3K Splice_Site p.X912_splice 0.06 TCGA-MM-A564-01 1 86174012 86174012 T C ZNHIT6 5'UTR 0.29 TCGA-MM-A564-01 20 18445911 18445911 A G DZANK1 Missense_Mutation p.L31P 0.20 tolerated(0.2) benign(0.027) TCGA-MM-A564-01 20 25450687 25450687 T - NINL Frame_Shift_Del p.N1098Tfs*27 0.22 TCGA-MM-A564-01 20 43561623 43561623 A C PABPC1L Intron 0.40 TCGA-MM-A564-01 20 44473054 44473054 G C ACOT8 Missense_Mutation p.P165R 0.36 deleterious(0.02) possibly_damaging(0.691) TCGA-MM-A564-01 20 57771059 57771059 A C ZNF831 Silent p.R1292R 0.43 TCGA-MM-A564-01 20 5903856 5903856 G T CHGB Missense_Mutation p.D356Y 0.15 deleterious(0) probably_damaging(0.956) TCGA-MM-A564-01 21 30445904 30445904 A G CCT8 Missense_Mutation p.L3P 0.30 deleterious(0) possibly_damaging(0.756) TCGA-MM-A564-01 21 43531239 43531239 G A UMODL1 Missense_Mutation p.S636N 0.33 tolerated(0.25) benign(0.065) TCGA-MM-A564-01 21 47860902 47860903 TT - PCNT Frame_Shift_Del p.L3177Gfs*37 0.22 TCGA-MM-A564-01 22 17073517 17073517 G T CCT8L2 5'UTR 0.27 TCGA-MM-A564-01 22 30682261 30682261 G T GATSL3 Missense_Mutation p.T245K 0.34 deleterious(0.02) benign(0.302) TCGA-MM-A564-01 22 50968009 50968009 G A TYMP Nonsense_Mutation p.R44* 0.30 TCGA-MM-A564-01 2 101549464 101549464 G T NPAS2 Splice_Site p.X91_splice 0.25 TCGA-MM-A564-01 2 127453852 127453852 G A GYPC 3'UTR 0.30 TCGA-MM-A564-01 2 141200074 141200074 G A LRP1B Silent p.C3471C 0.24 TCGA-MM-A564-01 2 170163810 170163810 T A LRP2 Silent p.G136G 0.35 TCGA-MM-A564-01 2 224463979 224463979 A G SCG2 Missense_Mutation p.W8R 0.23 tolerated(0.84) benign(0) TCGA-MM-A564-01 2 232087453 232087453 C G ARMC9 Missense_Mutation p.P173A 0.22 tolerated(0.44) benign(0.16) TCGA-MM-A564-01 2 238253041 238253041 G - COL6A3 Frame_Shift_Del p.L2541Cfs*84 0.19 TCGA-MM-A564-01 2 46988078 46988078 T C SOCS5 3'UTR 0.30 TCGA-MM-A564-01 2 97911213 97911213 A - ANKRD36 Frame_Shift_Del p.Y1630Sfs*5 0.14 TCGA-MM-A564-01 3 10191497 10191497 C T VHL Nonsense_Mutation p.Q164* 0.41 TCGA-MM-A564-01 3 132413730 132413730 C A NPHP3 Missense_Mutation p.V751F 0.40 deleterious(0.02) benign(0.223) TCGA-MM-A564-01 3 133647909 133647909 C T C3orf36 5'UTR 0.44 TCGA-MM-A564-01 3 133877044 133877044 C T RYK Missense_Mutation p.V594I 0.33 tolerated(0.42) possibly_damaging(0.491) TCGA-MM-A564-01 3 52637711 52637711 G A PBRM1 Nonsense_Mutation p.Q869* 0.27 TCGA-MM-A564-01 3 53226180 53226181 CC - PRKCD Frame_Shift_Del p.S645Lfs*40 0.31 TCGA-MM-A564-01 3 62248618 62248618 T A PTPRG Intron 0.39 TCGA-MM-A564-01 4 40356626 40356626 A G CHRNA9 3'UTR 0.36 TCGA-MM-A564-01 5 147902861 147902861 G T HTR4 Silent p.T134T 0.55 TCGA-MM-A564-01 5 149427187 149427187 G T HMGXB3 Missense_Mutation p.G984V 0.46 deleterious(0) probably_damaging(1) TCGA-MM-A564-01 5 176894267 176894267 C - DBN1 Frame_Shift_Del p.E184Sfs*61 0.31 TCGA-MM-A564-01 5 90149293 90149293 G A GPR98 Silent p.E5799E 0.45 TCGA-MM-A564-01 6 109752389 109752397 AATCCTCAG - PPIL6 In_Frame_Del p.T128_F131delinsI 0.19 TCGA-MM-A564-01 6 30121950 30121950 A G TRIM10 Silent p.A414A 0.29 TCGA-MM-A564-01 6 36823489 36823489 G A PPIL1 3'UTR 0.56 TCGA-MM-A564-01 6 56462750 56462750 C T DST Missense_Mutation p.D1372N 0.33 benign(0.015) TCGA-MM-A564-01 6 84799167 84799167 A G MRAP2 Silent p.P195P 0.04 TCGA-MM-A564-01 7 33390846 33390846 G A BBS9 Missense_Mutation p.R483K 0.46 tolerated(1) benign(0.001) TCGA-MM-A564-01 7 50135974 50135974 G A C7orf72 Missense_Mutation p.R98Q 0.19 tolerated(0.13) probably_damaging(0.992) TCGA-MM-A564-01 7 6187422 6187422 G A USP42 Missense_Mutation p.G429S 0.20 deleterious(0.04) possibly_damaging(0.48) TCGA-MM-A564-01 8 20005569 20005569 G T SLC18A1 Missense_Mutation p.H387N 0.33 tolerated(0.19) benign(0.139) TCGA-MM-A564-01 9 117062362 117062362 G A COL27A1 Missense_Mutation p.E1533K 0.20 unknown(0) TCGA-MM-A564-01 9 15453065 15453065 A G SNAPC3 Missense_Mutation p.H281R 0.28 tolerated(0.27) benign(0.012) TCGA-MM-A564-01 9 2643719 2643720 - G VLDLR Frame_Shift_Ins p.D305Gfs*5 0.24 TCGA-MM-A564-01 9 35561301 35561301 C A RUSC2 Silent p.P1491P 0.34 TCGA-MM-A564-01 9 72472854 72472854 G T C9orf135 Missense_Mutation p.G137V 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-MM-A564-01 9 73240142 73240142 G A TRPM3 Missense_Mutation p.R580W 0.24 deleterious(0) probably_damaging(0.967) TCGA-MM-A564-01 X 26211940 26211940 C A MAGEB6 5'UTR 0.57 TCGA-MM-A564-01 X 3030280 3030280 T A ARSF Missense_Mutation p.Y486N 0.54 deleterious(0) probably_damaging(0.983) TCGA-MM-A564-01 X 53226193 53226193 C - KDM5C Frame_Shift_Del p.E886Rfs*49 0.42 TCGA-MM-A84U-01 10 75434624 75434624 C T AGAP5 Silent p.E598E 0.29 TCGA-MM-A84U-01 10 81838450 81838450 G A TMEM254 5'UTR 0.27 TCGA-MM-A84U-01 10 81838451 81838451 C G TMEM254 5'UTR 0.27 TCGA-MM-A84U-01 10 91498321 91498321 T A KIF20B Missense_Mutation p.H1201Q 0.21 tolerated(0.24) benign(0.008) TCGA-MM-A84U-01 11 1605918 1605918 C T KRTAP5-1 Missense_Mutation p.G188S 0.16 tolerated_low_confidence(0.17) unknown(0) TCGA-MM-A84U-01 11 43350408 43350408 A C API5 Missense_Mutation p.K364N 0.24 tolerated(0.25) benign(0.065) TCGA-MM-A84U-01 11 65562572 65562572 T C OVOL1 Silent p.S188S 0.33 TCGA-MM-A84U-01 12 27915746 27915746 C G MANSC4 Missense_Mutation p.Q316H 0.17 tolerated(0.39) benign(0.009) TCGA-MM-A84U-01 12 53412776 53412776 T C EIF4B Missense_Mutation p.F116L 0.19 deleterious(0.04) benign(0.418) TCGA-MM-A84U-01 12 54795166 54795166 A T ITGA5 Missense_Mutation p.H828Q 0.05 tolerated(0.07) possibly_damaging(0.685) TCGA-MM-A84U-01 12 56510458 56510458 G T RPL41 5'UTR 0.16 TCGA-MM-A84U-01 12 56574884 56574884 G A SMARCC2 Missense_Mutation p.P320S 0.31 tolerated(0.22) possibly_damaging(0.641) TCGA-MM-A84U-01 12 6697082 6697082 T C CHD4 Missense_Mutation p.K1167E 0.29 deleterious(0.03) benign(0.009) TCGA-MM-A84U-01 12 7169780 7169780 T A C1S Missense_Mutation p.C3S 0.18 tolerated(0.19) benign(0.004) TCGA-MM-A84U-01 13 101997615 101997633 ACCTATCTCATTAAAGCCA - NALCN Splice_Site p.X261_splice 0.09 TCGA-MM-A84U-01 13 37569729 37569729 G A ALG5 Missense_Mutation p.S24F 0.04 tolerated(0.7) benign(0.194) TCGA-MM-A84U-01 13 50588285 50588285 C A TRIM13 3'Flank 0.20 TCGA-MM-A84U-01 14 104633236 104633236 C T KIF26A Missense_Mutation p.P322S 0.21 tolerated(0.35) benign(0.039) TCGA-MM-A84U-01 14 105926761 105926761 G T MTA1 Missense_Mutation p.M240I 0.04 deleterious(0.02) benign(0.352) TCGA-MM-A84U-01 15 42703491 42703491 T A CAPN3 Missense_Mutation p.F796Y 0.27 deleterious(0) benign(0.081) TCGA-MM-A84U-01 15 63063273 63063273 T C TLN2 Silent p.T1769T 0.26 TCGA-MM-A84U-01 15 65273364 65273364 C G SPG21 Splice_Site p.X22_splice 0.32 TCGA-MM-A84U-01 16 1859362 1859362 G A HAGH Silent p.H283H 0.28 TCGA-MM-A84U-01 16 2807550 2807550 G C SRRM2 Missense_Mutation p.G107A 0.10 unknown(0) TCGA-MM-A84U-01 16 57003373 57003373 T G CETP Missense_Mutation p.I103M 0.24 deleterious(0) probably_damaging(0.986) TCGA-MM-A84U-01 16 57609603 57609603 C T GPR114 3'UTR 0.25 TCGA-MM-A84U-01 16 640274 640274 G A RAB40C 5'UTR 0.17 TCGA-MM-A84U-01 16 67864435 67864435 G T CENPT Missense_Mutation p.D240E 0.25 deleterious(0.04) probably_damaging(0.996) TCGA-MM-A84U-01 16 7680606 7680606 C T RBFOX1 Silent p.G246G 0.20 TCGA-MM-A84U-01 17 30771592 30771592 C T PSMD11 Silent p.S17S 0.07 TCGA-MM-A84U-01 17 36487302 36487302 C T GPR179 Missense_Mutation p.R717H 0.15 tolerated(0.06) benign(0.226) TCGA-MM-A84U-01 17 47785099 47785099 C T SLC35B1 Missense_Mutation p.E33K 0.27 deleterious(0) probably_damaging(0.99) TCGA-MM-A84U-01 17 66890316 66890316 C T ABCA8 Missense_Mutation p.E972K 0.08 tolerated(0.72) benign(0.035) TCGA-MM-A84U-01 17 72301450 72301450 C T DNAI2 Silent p.F360F 0.23 TCGA-MM-A84U-01 17 79827614 79827614 C A ARHGDIA Intron 0.18 TCGA-MM-A84U-01 18 32887561 32887561 C G ZNF271 RNA 0.27 TCGA-MM-A84U-01 18 56998331 56998331 G C LMAN1 Missense_Mutation p.F509L 0.12 tolerated(0.12) benign(0.004) TCGA-MM-A84U-01 19 35551628 35551628 C G HPN Missense_Mutation p.H240D 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-MM-A84U-01 19 36046426 36046426 C A ATP4A Missense_Mutation p.E691D 0.32 tolerated(0.68) benign(0.003) TCGA-MM-A84U-01 19 39327302 39327302 A T HNRNPL 3'UTR 0.14 TCGA-MM-A84U-01 19 41860703 41860703 C - B9D2 Frame_Shift_Del p.A144Pfs*68 0.20 TCGA-MM-A84U-01 19 42471453 42471453 G T ATP1A3 Silent p.L1000L 0.27 TCGA-MM-A84U-01 19 53793869 53793869 G A BIRC8 5'UTR 0.25 TCGA-MM-A84U-01 19 53958931 53958932 - T ZNF761 RNA 0.21 TCGA-MM-A84U-01 19 53958937 53958937 T A ZNF761 RNA 0.21 TCGA-MM-A84U-01 19 57036440 57036440 G A ZNF471 Missense_Mutation p.R335Q 0.04 tolerated(0.44) probably_damaging(0.985) TCGA-MM-A84U-01 19 8146342 8146343 GA - FBN3 Frame_Shift_Del p.V2412Afs*75 0.16 TCGA-MM-A84U-01 1 108023426 108023426 C T NTNG1 Silent p.T528T 0.14 TCGA-MM-A84U-01 1 11294268 11294268 G A MTOR Missense_Mutation p.R755C 0.28 deleterious(0.03) possibly_damaging(0.869) TCGA-MM-A84U-01 1 156108393 156108393 G A LMNA Missense_Mutation p.A605T 0.23 tolerated_low_confidence(0.25) benign(0.102) TCGA-MM-A84U-01 1 156646705 156646705 C T NES Missense_Mutation p.A118T 0.26 deleterious(0.05) probably_damaging(0.983) TCGA-MM-A84U-01 1 157963406 157963406 C T KIRREL 5'UTR 0.23 TCGA-MM-A84U-01 1 196874242 196874242 A G CFHR4 Silent p.T86T 0.23 TCGA-MM-A84U-01 1 197032162 197032162 C T F13B Silent p.V30V 0.05 TCGA-MM-A84U-01 1 19992099 19992099 C - HTR6 5'UTR 0.21 TCGA-MM-A84U-01 1 201356073 201356083 TCCAGTTCCTT A LAD1 Frame_Shift_Del p.K136* 0.23 TCGA-MM-A84U-01 1 237586435 237586435 C T RYR2 Missense_Mutation p.R298C 0.28 benign(0.054) TCGA-MM-A84U-01 1 24998966 24998966 C G SRRM1 3'UTR 0.22 TCGA-MM-A84U-01 1 29189517 29189517 G A OPRD1 Missense_Mutation p.V281I 0.26 tolerated(0.44) benign(0.164) TCGA-MM-A84U-01 1 3564107 3564107 G C WRAP73 Nonsense_Mutation p.Y29* 0.15 TCGA-MM-A84U-01 1 51001100 51001102 TCA - FAF1 In_Frame_Del p.M478del 0.20 TCGA-MM-A84U-01 1 86196110 86196110 T A COL24A1 3'UTR 0.28 TCGA-MM-A84U-01 20 20013999 20013999 G A NAA20 3'UTR 0.31 TCGA-MM-A84U-01 20 30386195 30386195 A - TPX2 Frame_Shift_Del p.E658Dfs*24 0.24 TCGA-MM-A84U-01 20 35234279 35234279 C - C20orf24 5'UTR 0.21 TCGA-MM-A84U-01 20 49509384 49509384 G T ADNP Missense_Mutation p.L623I 0.31 deleterious(0.03) probably_damaging(0.991) TCGA-MM-A84U-01 20 50405445 50405445 C A SALL4 Silent p.V899V 0.26 TCGA-MM-A84U-01 21 37728984 37728984 T C MORC3 Silent p.N390N 0.24 TCGA-MM-A84U-01 21 44483097 44483097 C T CBS Missense_Mutation p.G307D 0.13 deleterious(0) probably_damaging(1) TCGA-MM-A84U-01 22 31600728 31600728 T A RNF185 3'UTR 0.43 TCGA-MM-A84U-01 22 42608677 42608677 C - TCF20 Frame_Shift_Del p.D879Tfs*10 0.23 TCGA-MM-A84U-01 2 152737339 152737339 G A CACNB4 Missense_Mutation p.A122V 0.05 tolerated(0.33) probably_damaging(0.993) TCGA-MM-A84U-01 2 179408572 179408572 A G TTN Missense_Mutation p.V32100A 0.25 TCGA-MM-A84U-01 2 191066341 191066341 T C C2orf88 3'UTR 0.06 TCGA-MM-A84U-01 2 228497920 228497920 C G C2orf83 5'Flank 0.38 TCGA-MM-A84U-01 2 27354276 27354276 G A PREB 3'UTR 0.21 TCGA-MM-A84U-01 2 63217928 63217928 A T EHBP1 Missense_Mutation p.S967C 0.23 deleterious(0) benign(0.443) TCGA-MM-A84U-01 3 113724776 113724776 G A KIAA1407 Missense_Mutation p.P483S 0.20 tolerated(0.23) benign(0.049) TCGA-MM-A84U-01 3 118870133 118870133 G T C3orf30 Missense_Mutation p.Q535H 0.24 deleterious(0) probably_damaging(0.977) TCGA-MM-A84U-01 3 133647340 133647340 G A C3orf36 Missense_Mutation p.P103L 0.06 tolerated_low_confidence(0.32) possibly_damaging(0.851) TCGA-MM-A84U-01 3 140123433 140123433 C T CLSTN2 Silent p.N154N 0.17 TCGA-MM-A84U-01 3 160000344 160000344 C T IFT80 Missense_Mutation p.A480T 0.21 tolerated(0.12) benign(0.062) TCGA-MM-A84U-01 3 179298953 179298953 G C ACTL6A Missense_Mutation p.G324A 0.13 tolerated(0.07) probably_damaging(0.939) TCGA-MM-A84U-01 3 97367286 97367286 A G EPHA6 Intron 0.33 TCGA-MM-A84U-01 4 115997753 115997753 C T NDST4 Missense_Mutation p.R147Q 0.27 deleterious(0.01) benign(0.014) TCGA-MM-A84U-01 4 130014261 130014261 C T SCLT1 5'UTR 0.19 TCGA-MM-A84U-01 4 143007367 143007369 AGC - INPP4B In_Frame_Del p.L806del 0.21 TCGA-MM-A84U-01 4 144136272 144136272 A G USP38 Intron 0.39 TCGA-MM-A84U-01 4 71555763 71555763 G A UTP3 Missense_Mutation p.E457K 0.04 deleterious(0) probably_damaging(1) TCGA-MM-A84U-01 4 73205390 73205390 C T ADAMTS3 Missense_Mutation p.D228N 0.18 tolerated(0.24) benign(0.012) TCGA-MM-A84U-01 4 74735487 74735487 C T CXCL1 Missense_Mutation p.H68Y 0.14 deleterious(0) benign(0.14) TCGA-MM-A84U-01 5 131927054 131927057 CATA - RAD50 Frame_Shift_Del p.H531Qfs*10 0.23 TCGA-MM-A84U-01 5 137513333 137513333 G T BRD8 Missense_Mutation p.P15T 0.28 deleterious(0) probably_damaging(0.999) TCGA-MM-A84U-01 5 140856585 140856585 C G PCDHGC3 Missense_Mutation p.T301S 0.21 tolerated(0.27) benign(0.016) TCGA-MM-A84U-01 5 167689607 167689607 C T TENM2 Missense_Mutation p.T2706M 0.17 tolerated(0.08) benign(0.032) TCGA-MM-A84U-01 5 52177732 52177732 G A ITGA1 Missense_Mutation p.V218M 0.30 deleterious(0.03) probably_damaging(0.936) TCGA-MM-A84U-01 5 75621277 75621277 A C SV2C Missense_Mutation p.K697Q 0.24 deleterious(0.01) probably_damaging(1) TCGA-MM-A84U-01 5 95072740 95072740 G A RHOBTB3 Missense_Mutation p.V126I 0.22 tolerated(0.21) benign(0.022) TCGA-MM-A84U-01 6 132185688 132185688 G T ENPP1 Missense_Mutation p.W356C 0.23 deleterious(0) probably_damaging(0.991) TCGA-MM-A84U-01 6 154743665 154743665 A G CNKSR3 Missense_Mutation p.L307P 0.24 deleterious(0) probably_damaging(0.969) TCGA-MM-A84U-01 6 168226568 168226568 A T MLLT4 5'Flank 0.27 TCGA-MM-A84U-01 6 31635711 31635711 C T CSNK2B-LY6G5B-1181 Nonsense_Mutation p.R47* 0.21 TCGA-MM-A84U-01 6 33374183 33374183 C G KIFC1 Missense_Mutation p.R583G 0.21 tolerated_low_confidence(0.21) probably_damaging(0.939) TCGA-MM-A84U-01 6 33374189 33374189 C G KIFC1 Missense_Mutation p.R585G 0.21 deleterious(0) probably_damaging(1) TCGA-MM-A84U-01 6 74351610 74351610 C A SLC17A5 Missense_Mutation p.W110L 0.19 tolerated(0.64) benign(0.123) TCGA-MM-A84U-01 7 102665659 102665659 G A FBXL13 Nonsense_Mutation p.Q116* 0.25 TCGA-MM-A84U-01 7 138921774 138921774 C G UBN2 Missense_Mutation p.D164E 0.24 deleterious(0.02) probably_damaging(0.97) TCGA-MM-A84U-01 7 150748362 150748362 G A ASIC3 Silent p.A390A 0.17 TCGA-MM-A84U-01 7 91793732 91793732 A T LRRD1 Nonsense_Mutation p.L262* 0.29 TCGA-MM-A84U-01 8 146033159 146033159 G A ZNF517 Silent p.E286E 0.07 TCGA-MM-A84U-01 8 29048559 29048570 GATCATAAGCAA - KIF13B In_Frame_Del p.F56_H60delinsY 0.21 TCGA-MM-A84U-01 8 54880344 54880344 C G TCEA1 3'UTR 0.32 TCGA-MM-A84U-01 9 130489590 130489590 C T TTC16 Missense_Mutation p.A537V 0.10 tolerated(0.07) benign(0.091) TCGA-MM-A84U-01 9 135763991 135763991 A C C9orf9 Intron 0.30 TCGA-MM-A84U-01 9 32635626 32635626 C T TAF1L 5'UTR 0.16 TCGA-MM-A84U-01 9 94493408 94493408 C A ROR2 Missense_Mutation p.D323Y 0.30 deleterious(0) probably_damaging(0.951) TCGA-MM-A84U-01 X 106185800 106185800 C T MORC4 Missense_Mutation p.R774K 0.26 tolerated(0.32) possibly_damaging(0.688) TCGA-MM-A84U-01 X 108868255 108868255 T A KCNE1L 5'UTR 0.31 TCGA-MM-A84U-01 X 108868256 108868256 C T KCNE1L 5'UTR 0.30 TCGA-MM-A84U-01 X 109963087 109963087 C G CHRDL1 Missense_Mutation p.D173H 0.33 deleterious(0.02) possibly_damaging(0.866) TCGA-MM-A84U-01 X 153631024 153631024 G A DNASE1L1 3'UTR 0.24 TCGA-MM-A84U-01 X 54481936 54481936 G C FGD1 Missense_Mutation p.L654V 0.34 tolerated(0.41) benign(0.033) TCGA-MM-A84U-01 X 70443712 70443712 T C GJB1 Missense_Mutation p.I52T 0.26 tolerated(0.66) benign(0.002) TCGA-MW-A4EC-01 10 133976871 133976871 C T JAKMIP3 Silent p.A791A 0.43 TCGA-MW-A4EC-01 10 76995125 76995125 G A COMTD1 Silent p.T76T 0.38 TCGA-MW-A4EC-01 11 113281403 113281403 G T DRD2 3'UTR 0.24 TCGA-MW-A4EC-01 11 130281370 130281370 G A ADAMTS8 Silent p.Y564Y 0.33 TCGA-MW-A4EC-01 11 4566889 4566889 T C OR52M1 Missense_Mutation p.Y157H 0.04 deleterious(0.01) probably_damaging(0.989) TCGA-MW-A4EC-01 11 65161808 65161808 G A FRMD8 Missense_Mutation p.V165M 0.07 tolerated(0.1) benign(0.08) TCGA-MW-A4EC-01 11 69933982 69933982 C A ANO1 Missense_Mutation p.T78N 0.34 tolerated(0.59) benign(0.006) TCGA-MW-A4EC-01 12 53586258 53586258 C T ITGB7 Missense_Mutation p.A671T 0.29 tolerated(0.24) benign(0.118) TCGA-MW-A4EC-01 12 6559846 6559846 G A CD27 Intron 0.32 TCGA-MW-A4EC-01 13 51599571 51599571 G A RNA5SP29 3'Flank 0.32 TCGA-MW-A4EC-01 14 20295894 20295894 G A OR4N2 Missense_Mutation p.G96D 0.30 deleterious(0.04) benign(0.033) TCGA-MW-A4EC-01 14 65261183 65261183 A T SPTB Splice_Site p.X599_splice 0.06 TCGA-MW-A4EC-01 14 76447196 76447196 A G TGFB3 Missense_Mutation p.L14P 0.30 deleterious(0.01) probably_damaging(0.964) TCGA-MW-A4EC-01 15 97327392 97327392 G A SPATA8 Silent p.S33S 0.35 TCGA-MW-A4EC-01 16 21658534 21658534 T C IGSF6 Missense_Mutation p.Y116C 0.31 deleterious(0) probably_damaging(1) TCGA-MW-A4EC-01 16 24582895 24582895 G A RBBP6 Missense_Mutation p.R1503Q 0.33 deleterious_low_confidence(0) unknown(0) TCGA-MW-A4EC-01 16 31437490 31437490 C T ITGAD 3'UTR 0.24 TCGA-MW-A4EC-01 16 56481803 56481803 T C NUDT21 Missense_Mutation p.D72G 0.27 tolerated(0.05) benign(0.126) TCGA-MW-A4EC-01 16 87436923 87436923 C A MAP1LC3B 3'UTR 0.30 TCGA-MW-A4EC-01 17 26603794 26603794 G A AC061975.8 5'Flank 0.33 TCGA-MW-A4EC-01 17 37761711 37761711 T C NEUROD2 Missense_Mutation p.H381R 0.50 deleterious(0) possibly_damaging(0.829) TCGA-MW-A4EC-01 17 53853431 53853431 A T PCTP Missense_Mutation p.R205S 0.26 deleterious(0.03) benign(0.022) TCGA-MW-A4EC-01 17 65338329 65338329 C G PSMD12 Missense_Mutation p.M378I 0.31 deleterious(0.04) benign(0.291) TCGA-MW-A4EC-01 17 66982433 66982433 G A ABCA9 Silent p.P1360P 0.31 TCGA-MW-A4EC-01 19 17326303 17326303 G T USE1 Missense_Mutation p.W30L 0.42 deleterious(0) probably_damaging(0.996) TCGA-MW-A4EC-01 19 5214593 5214593 C T PTPRS Silent p.T1491T 0.04 TCGA-MW-A4EC-01 1 156269153 156269154 CT - VHLL 5'UTR 0.26 TCGA-MW-A4EC-01 1 36291341 36291341 G A AGO4 Missense_Mutation p.G184R 0.31 deleterious(0.01) possibly_damaging(0.798) TCGA-MW-A4EC-01 20 45354957 45354957 G - SLC2A10 Frame_Shift_Del p.P429Qfs*2 0.25 TCGA-MW-A4EC-01 20 61341003 61341003 C T NTSR1 Silent p.R148R 0.47 TCGA-MW-A4EC-01 21 34537956 34537956 G A C21orf54 3'UTR 0.24 TCGA-MW-A4EC-01 22 50552179 50552179 A C MOV10L1 Silent p.L282L 0.21 TCGA-MW-A4EC-01 2 149847669 149847669 C T KIF5C Missense_Mutation p.A621V 0.30 tolerated(0.29) benign(0.002) TCGA-MW-A4EC-01 2 16086069 16086069 G A MYCN Silent p.E415E 0.36 TCGA-MW-A4EC-01 2 179596259 179596259 C G TTN Missense_Mutation p.G5745A 0.21 TCGA-MW-A4EC-01 3 10191480 10191480 T G VHL Missense_Mutation p.L158R 0.54 deleterious(0) probably_damaging(0.991) TCGA-MW-A4EC-01 3 134343963 134343963 G T KY Silent p.R139R 0.08 TCGA-MW-A4EC-01 3 190126120 190126120 G A CLDN16 Missense_Mutation p.G204S 0.21 tolerated(0.12) probably_damaging(0.99) TCGA-MW-A4EC-01 4 146065551 146065551 G C OTUD4 Missense_Mutation p.S421R 0.30 tolerated(0.31) benign(0.156) TCGA-MW-A4EC-01 5 149359873 149359873 T G SLC26A2 Missense_Mutation p.F239L 0.45 tolerated(0.91) benign(0.174) TCGA-MW-A4EC-01 5 149778607 149778607 T C TCOF1 Missense_Mutation p.V1488A 0.22 deleterious_low_confidence(0) unknown(0) TCGA-MW-A4EC-01 5 36985785 36985785 G - NIPBL Frame_Shift_Del p.D836Ifs*11 0.17 TCGA-MW-A4EC-01 5 86564999 86564999 T C RASA1 Intron 0.46 TCGA-MW-A4EC-01 6 136495013 136495013 C T PDE7B Missense_Mutation p.P264S 0.43 tolerated(0.18) probably_damaging(0.999) TCGA-MW-A4EC-01 6 165693571 165693571 C A C6orf118 Missense_Mutation p.C462F 0.26 tolerated_low_confidence(0.13) benign(0.354) TCGA-MW-A4EC-01 6 17779298 17779298 C T KIF13A Silent p.L1324L 0.16 TCGA-MW-A4EC-01 6 86281934 86281934 C G SNX14 Splice_Site p.X113_splice 0.32 TCGA-MW-A4EC-01 6 87967584 87967584 C G ZNF292 Missense_Mutation p.L1413V 0.04 tolerated(0.08) possibly_damaging(0.507) TCGA-MW-A4EC-01 7 121943895 121943895 G A FEZF1 Silent p.A199A 0.25 TCGA-MW-A4EC-01 7 40134171 40134171 G T CDK13 Missense_Mutation p.L1377F 0.33 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-MW-A4EC-01 8 125332384 125332385 AA - TMEM65 Frame_Shift_Del p.I188Tfs*2 0.24 TCGA-MW-A4EC-01 8 145114594 145114594 G C OPLAH Missense_Mutation p.R91G 0.10 deleterious(0) possibly_damaging(0.564) TCGA-MW-A4EC-01 9 34726364 34726364 C T FAM205A Silent p.V291V 0.37 TCGA-MW-A4EC-01 9 80881576 80881576 G T CEP78 Missense_Mutation p.L689F 0.05 deleterious_low_confidence(0.04) benign(0.082) TCGA-MW-A4EC-01 X 109698507 109698507 A C RGAG1 Silent p.G1375G 0.25 TCGA-MW-A4EC-01 X 11157109 11157109 T C ARHGAP6 Silent p.P933P 0.20 TCGA-MW-A4EC-01 X 151283517 151283517 C T RP11-1007I13.4 RNA 0.30 TCGA-MW-A4EC-01 X 152616034 152616034 G C ZNF275 3'UTR 0.17 TCGA-MW-A4EC-01 X 24091372 24091372 A T EIF2S3 Missense_Mutation p.K449N 0.29 tolerated(0.18) benign(0.084) TCGA-MW-A4EC-01 X 75004111 75004111 C A MAGEE2 Missense_Mutation p.R259M 0.26 tolerated(0.17) benign(0.015) TCGA-MW-A4EC-01 X 9660202 9660202 G - TBL1X Frame_Shift_Del p.G268Afs*7 0.23 TCGA-T7-A92I-01 10 73768164 73768164 G T CHST3 Missense_Mutation p.A459S 0.20 tolerated(0.55) benign(0.103) TCGA-T7-A92I-01 11 27681088 27681088 T C BDNF Intron 0.32 TCGA-T7-A92I-01 11 48188903 48188903 T A PTPRJ Missense_Mutation p.Y1335N 0.34 deleterious(0) probably_damaging(0.994) TCGA-T7-A92I-01 11 86119298 86119298 C T CCDC81 Missense_Mutation p.L367F 0.36 tolerated(0.41) benign(0.024) TCGA-T7-A92I-01 13 32972823 32972823 C T BRCA2 Silent p.I3391I 0.32 TCGA-T7-A92I-01 13 99738618 99738618 G A DOCK9-AS2 5'Flank 0.41 TCGA-T7-A92I-01 14 20404237 20404237 C T OR4K1 Missense_Mutation p.R138W 0.18 tolerated(0.2) benign(0.393) TCGA-T7-A92I-01 15 40462804 40462826 AGAAAGAGCTGTAGAAGCACTAC - BUB1B Frame_Shift_Del p.E103Rfs*7 0.34 TCGA-T7-A92I-01 15 44097305 44097305 C T MFAP1 Missense_Mutation p.R436Q 0.35 tolerated(0.17) benign(0.144) TCGA-T7-A92I-01 15 52903379 52903379 T C FAM214A Missense_Mutation p.S160G 0.41 deleterious(0) possibly_damaging(0.885) TCGA-T7-A92I-01 16 11846625 11846625 T C ZC3H7A Missense_Mutation p.I876V 0.34 deleterious(0.02) probably_damaging(0.994) TCGA-T7-A92I-01 16 2125857 2125857 T A TSC2 Missense_Mutation p.V868E 0.24 deleterious(0) probably_damaging(0.999) TCGA-T7-A92I-01 16 2130379 2130379 G C TSC2 Splice_Site p.X1204_splice 0.31 TCGA-T7-A92I-01 16 3565541 3565541 G T CLUAP1 Nonsense_Mutation p.E177* 0.07 TCGA-T7-A92I-01 16 90162322 90162322 G A TUBB8P7 RNA 0.07 TCGA-T7-A92I-01 17 36963143 36963143 T A CWC25 Missense_Mutation p.R259S 0.15 deleterious(0.04) benign(0.275) TCGA-T7-A92I-01 17 40345048 40345048 A G GHDC Intron 0.23 TCGA-T7-A92I-01 19 12739970 12739970 A - ZNF791 Frame_Shift_Del p.T543Qfs*25 0.23 TCGA-T7-A92I-01 19 19335230 19335230 C T NCAN Missense_Mutation p.R256W 0.29 deleterious(0) probably_damaging(0.998) TCGA-T7-A92I-01 19 52919017 52919017 G T ZNF528 Missense_Mutation p.K304N 0.34 deleterious(0) probably_damaging(1) TCGA-T7-A92I-01 19 54652153 54652153 C T CNOT3 Missense_Mutation p.R389W 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-T7-A92I-01 19 55295195 55295195 C T KIR2DL1 Missense_Mutation p.P326L 0.50 tolerated(0.25) probably_damaging(0.987) TCGA-T7-A92I-01 1 156028127 156028127 C A LAMTOR2 Missense_Mutation p.L115M 0.40 deleterious(0) probably_damaging(0.946) TCGA-T7-A92I-01 20 20023110 20023110 T A CRNKL1 Missense_Mutation p.E502D 0.27 deleterious(0.01) benign(0.411) TCGA-T7-A92I-01 20 3102764 3102764 C T UBOX5 Missense_Mutation p.R174K 0.35 tolerated(1) benign(0) TCGA-T7-A92I-01 20 3102766 3102766 T A UBOX5 Missense_Mutation p.L173F 0.36 tolerated(0.06) benign(0.082) TCGA-T7-A92I-01 22 19109688 19109689 - G DGCR2 Frame_Shift_Ins p.L11Pfs*42 0.20 TCGA-T7-A92I-01 22 23214070 23214070 G C IGLV4-3 Missense_Mutation p.S76T 0.29 tolerated(0.28) benign(0.011) TCGA-T7-A92I-01 22 39083877 39083877 C T JOSD1 3'UTR 0.29 TCGA-T7-A92I-01 22 39083878 39083878 T C JOSD1 3'UTR 0.28 TCGA-T7-A92I-01 2 179432349 179432349 A C TTN Silent p.G26170G 0.25 TCGA-T7-A92I-01 2 242265518 242265518 G A SEPT2 Silent p.L40L 0.33 TCGA-T7-A92I-01 2 44066228 44066228 G A ABCG8 Silent p.P12P 0.31 TCGA-T7-A92I-01 2 55791588 55791588 T C SMEK2 Silent p.K707K 0.33 TCGA-T7-A92I-01 3 132423118 132423118 T C NPHP3 Missense_Mutation p.D483G 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-T7-A92I-01 3 169694752 169694752 G T SEC62 Missense_Mutation p.C55F 0.31 deleterious(0) benign(0.066) TCGA-T7-A92I-01 3 48629364 48629364 G T COL7A1 Missense_Mutation p.R442S 0.28 unknown(0) TCGA-T7-A92I-01 3 74315731 74315731 C T CNTN3 Missense_Mutation p.V963M 0.23 tolerated(0.26) benign(0.054) TCGA-T7-A92I-01 4 114279456 114279456 G A ANK2 Missense_Mutation p.V3228M 0.29 benign(0.005) TCGA-T7-A92I-01 5 115822586 115822586 G A SEMA6A Missense_Mutation p.T274M 0.33 deleterious(0) probably_damaging(1) TCGA-T7-A92I-01 5 140710384 140710384 G T PCDHGA1 Missense_Mutation p.V45L 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-T7-A92I-01 5 169309803 169309803 G A FAM196B Missense_Mutation p.T367I 0.04 tolerated(0.21) benign(0.003) TCGA-T7-A92I-01 5 72469673 72469673 T C TMEM174 Silent p.S201S 0.33 TCGA-T7-A92I-01 7 117824268 117824268 G T NAA38 5'UTR 0.05 TCGA-T7-A92I-01 7 121650949 121650949 A G PTPRZ1 Missense_Mutation p.I617V 0.35 tolerated_low_confidence(0.44) benign(0.005) TCGA-T7-A92I-01 7 133682373 133682373 C A EXOC4 Missense_Mutation p.H779N 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-T7-A92I-01 7 44556847 44556847 T A NPC1L1 Missense_Mutation p.K1109N 0.08 tolerated(0.26) benign(0.023) TCGA-T7-A92I-01 X 62885784 62885784 C G ARHGEF9 Missense_Mutation p.Q346H 0.19 deleterious(0) probably_damaging(0.998)