sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-2K-A9WE-01 10 46113699 46113699 G C ZFAND4 Missense_Mutation p.T646S 0.15 tolerated(0.47) benign(0.292) TCGA-2K-A9WE-01 10 49663122 49663122 G A ARHGAP22 Missense_Mutation p.P255S 0.10 deleterious(0) probably_damaging(0.99) TCGA-2K-A9WE-01 10 51465326 51465326 T C AGAP7 Missense_Mutation p.K377R 0.05 tolerated(0.14) possibly_damaging(0.771) TCGA-2K-A9WE-01 10 85974460 85974460 T C CDHR1 3'UTR 0.08 TCGA-2K-A9WE-01 10 88659864 88659864 T - BMPR1A Frame_Shift_Del p.S171Pfs*36 0.09 TCGA-2K-A9WE-01 11 118255434 118255434 A C UBE4A Missense_Mutation p.Y768S 0.04 deleterious(0.01) possibly_damaging(0.721) TCGA-2K-A9WE-01 11 124620639 124620639 C T VSIG2 Missense_Mutation p.G133E 0.11 deleterious(0) probably_damaging(0.997) TCGA-2K-A9WE-01 11 43465612 43465612 T C TTC17 Missense_Mutation p.F840L 0.12 tolerated(0.15) probably_damaging(0.986) TCGA-2K-A9WE-01 11 6023641 6023641 G A OR56A4 Silent p.D246D 0.09 TCGA-2K-A9WE-01 11 801990 801990 G C PIDD Missense_Mutation p.T426S 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-2K-A9WE-01 11 82535970 82535970 T A PRCP Missense_Mutation p.D511V 0.07 tolerated(0.29) benign(0.001) TCGA-2K-A9WE-01 11 93432956 93432956 A G KIAA1731 Silent p.L1626L 0.10 TCGA-2K-A9WE-01 11 94583286 94583286 A C AMOTL1 Missense_Mutation p.E552D 0.04 deleterious(0.02) probably_damaging(0.986) TCGA-2K-A9WE-01 11 94917715 94917715 A - SESN3 Frame_Shift_Del p.M269Rfs*18 0.09 TCGA-2K-A9WE-01 12 49958678 49958683 CCTGGG - MCRS1 Splice_Site p.X110_splice 0.09 TCGA-2K-A9WE-01 12 54635546 54635546 T - CBX5 Frame_Shift_Del p.K190Rfs*111 0.11 TCGA-2K-A9WE-01 12 6933876 6933876 A C GPR162 Missense_Mutation p.N271T 0.12 tolerated(0.22) possibly_damaging(0.675) TCGA-2K-A9WE-01 12 94965414 94965414 G T TMCC3 Missense_Mutation p.L411M 0.07 deleterious(0) probably_damaging(0.999) TCGA-2K-A9WE-01 14 102368069 102368069 T C PPP2R5C Missense_Mutation p.L320P 0.10 deleterious(0) probably_damaging(0.994) TCGA-2K-A9WE-01 14 71493571 71493571 A G PCNX Silent p.Q1146Q 0.07 TCGA-2K-A9WE-01 15 63673897 63673897 G C CA12 Missense_Mutation p.A8G 0.12 deleterious_low_confidence(0.02) benign(0.012) TCGA-2K-A9WE-01 16 1961626 1961626 A G HS3ST6 Missense_Mutation p.Y301H 0.20 deleterious(0) probably_damaging(1) TCGA-2K-A9WE-01 16 53326887 53326887 T C CHD9 Silent p.P1811P 0.09 TCGA-2K-A9WE-01 16 67197572 67197572 C T FBXL8 Missense_Mutation p.A325V 0.17 tolerated(0.26) possibly_damaging(0.75) TCGA-2K-A9WE-01 16 84796615 84796615 G A USP10 Silent p.E525E 0.13 TCGA-2K-A9WE-01 17 15961807 15961807 A C NCOR1 Silent p.V1996V 0.09 TCGA-2K-A9WE-01 17 3563995 3563995 T C CTNS Silent p.T390T 0.11 TCGA-2K-A9WE-01 17 37985676 37985676 C A IKZF3 Nonsense_Mutation p.G43* 0.10 TCGA-2K-A9WE-01 17 47590364 47590364 C T NGFR Missense_Mutation p.P426L 0.09 tolerated(0.07) probably_damaging(0.926) TCGA-2K-A9WE-01 17 57754324 57754324 G C CLTC Silent p.L857L 0.22 TCGA-2K-A9WE-01 17 65147177 65147177 A G HELZ Silent p.L781L 0.16 TCGA-2K-A9WE-01 18 13068196 13068196 C T CEP192 Missense_Mutation p.S1573F 0.10 deleterious(0) probably_damaging(1) TCGA-2K-A9WE-01 19 40366139 40366139 A T FCGBP Missense_Mutation p.C4699S 0.08 probably_damaging(0.999) TCGA-2K-A9WE-01 19 42848184 42848184 G C MEGF8 Missense_Mutation p.A583P 0.12 tolerated(0.13) possibly_damaging(0.527) TCGA-2K-A9WE-01 19 44792736 44792737 - G ZNF235 Frame_Shift_Ins p.H285Tfs*10 0.10 TCGA-2K-A9WE-01 19 58490071 58490071 T G ZNF606 Missense_Mutation p.K659N 0.07 deleterious(0) probably_damaging(0.998) TCGA-2K-A9WE-01 19 9646885 9646885 A G ZNF426 Silent p.H8H 0.04 TCGA-2K-A9WE-01 1 113232693 113232693 G A MOV10 Missense_Mutation p.R270Q 0.09 tolerated(0.42) benign(0.002) TCGA-2K-A9WE-01 1 150246488 150246488 A G C1orf54 Splice_Site p.X16_splice 0.11 TCGA-2K-A9WE-01 1 1634967 1634967 G C CDK11A Missense_Mutation p.R670G 0.17 deleterious(0) unknown(0) TCGA-2K-A9WE-01 1 167097288 167097288 A C DUSP27 Missense_Mutation p.K974Q 0.06 tolerated(0.09) benign(0.09) TCGA-2K-A9WE-01 1 23381656 23381656 T - KDM1A Splice_Site p.X295_splice 0.09 TCGA-2K-A9WE-01 1 4772481 4772481 G T AJAP1 Missense_Mutation p.G184V 0.09 deleterious(0) probably_damaging(0.995) TCGA-2K-A9WE-01 20 57767752 57767752 G A ZNF831 Missense_Mutation p.A560T 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-2K-A9WE-01 21 35470742 35470756 CCTTGATAAGTTTTT TA SLC5A3 3'UTR 0.14 TCGA-2K-A9WE-01 21 46934752 46934752 G T SLC19A1 3'UTR 0.25 TCGA-2K-A9WE-01 22 50659180 50659180 G A TUBGCP6 Missense_Mutation p.S1203L 0.11 tolerated(0.14) benign(0.022) TCGA-2K-A9WE-01 22 50727513 50727513 C T PLXNB2 Missense_Mutation p.R376H 0.09 tolerated(0.06) benign(0.025) TCGA-2K-A9WE-01 2 109124276 109124276 A G GCC2 3'UTR 0.09 TCGA-2K-A9WE-01 2 109381490 109381490 T C RANBP2 Missense_Mutation p.C1499R 0.14 deleterious(0) probably_damaging(0.989) TCGA-2K-A9WE-01 2 110375583 110375583 A G SOWAHC 3'UTR 0.10 TCGA-2K-A9WE-01 2 128528415 128528415 T A WDR33 Silent p.R47R 0.09 TCGA-2K-A9WE-01 2 202265791 202265791 T C TRAK2 Missense_Mutation p.M105V 0.08 tolerated(0.22) benign(0.074) TCGA-2K-A9WE-01 2 27663700 27663700 G C NRBP1 Missense_Mutation p.G408R 0.15 deleterious(0.01) probably_damaging(0.959) TCGA-2K-A9WE-01 3 128694635 128694635 T C KIAA1257 Silent p.R336R 0.13 TCGA-2K-A9WE-01 3 152058400 152058400 C T TMEM14E Silent p.L98L 0.09 TCGA-2K-A9WE-01 3 52088120 52088120 A G DUSP7 Missense_Mutation p.L263P 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-2K-A9WE-01 5 13917315 13917315 C A DNAH5 Missense_Mutation p.K342N 0.09 possibly_damaging(0.728) TCGA-2K-A9WE-01 5 149276271 149276271 C A PDE6A Intron 0.20 TCGA-2K-A9WE-01 5 38370553 38370553 T A EGFLAM Missense_Mutation p.I234N 0.17 deleterious_low_confidence(0) benign(0.258) TCGA-2K-A9WE-01 5 76129481 76129481 A G F2RL1 Missense_Mutation p.D350G 0.22 deleterious(0) benign(0.177) TCGA-2K-A9WE-01 6 33170059 33170059 T A SLC39A7 Silent p.S218S 0.05 TCGA-2K-A9WE-01 6 43593600 43593600 C A GTPBP2 Missense_Mutation p.V134F 0.11 deleterious(0) possibly_damaging(0.494) TCGA-2K-A9WE-01 6 46766863 46766863 A T MEP1A Missense_Mutation p.R69S 0.13 tolerated(0.09) possibly_damaging(0.477) TCGA-2K-A9WE-01 7 121682687 121682687 T G PTPRZ1 Missense_Mutation p.Y1943D 0.14 deleterious(0) probably_damaging(1) TCGA-2K-A9WE-01 7 31862810 31862810 C A PDE1C Missense_Mutation p.G547C 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-2K-A9WE-01 7 43622978 43622978 A G STK17A Missense_Mutation p.I46V 0.07 tolerated(0.17) benign(0.288) TCGA-2K-A9WE-01 7 780577 780577 T A HEATR2 Missense_Mutation p.V301D 0.18 deleterious(0.01) benign(0.222) TCGA-2K-A9WE-01 8 118169968 118169968 G A SLC30A8 Missense_Mutation p.V153M 0.13 tolerated(0.28) benign(0.303) TCGA-2K-A9WE-01 8 24350057 24350058 - A ADAM7 Frame_Shift_Ins p.F536Ifs*15 0.08 TCGA-2K-A9WE-01 8 41790172 41790172 A G KAT6A Missense_Mutation p.S1856P 0.10 unknown(0) TCGA-2K-A9WE-01 9 104187287 104187287 A G ALDOB Silent p.D279D 0.07 TCGA-2K-A9WE-01 9 130678719 130678719 G A ST6GALNAC4 5'UTR 0.18 TCGA-2K-A9WE-01 9 137313579 137313579 G A RXRA Missense_Mutation p.V280M 0.09 deleterious(0.03) possibly_damaging(0.645) TCGA-2K-A9WE-01 X 11130225 11130225 A - HCCS Frame_Shift_Del p.N16Mfs*17 0.21 TCGA-2Z-A9J1-01 10 28971343 28971343 T C BAMBI 3'UTR 0.24 TCGA-2Z-A9J1-01 10 7773959 7773959 G T ITIH2 Silent p.S549S 0.33 TCGA-2Z-A9J1-01 10 93593660 93593660 T A TNKS2 Nonsense_Mutation p.Y442* 0.38 TCGA-2Z-A9J1-01 11 10876526 10876526 T G ZBED5 5'UTR 0.38 TCGA-2Z-A9J1-01 11 118498946 118498946 C T PHLDB1 Silent p.L469L 0.09 TCGA-2Z-A9J1-01 11 125891166 125891166 C T CDON Missense_Mutation p.G109D 0.40 tolerated(0.73) benign(0.315) TCGA-2Z-A9J1-01 11 74009326 74009327 - C P4HA3 Frame_Shift_Ins p.E217Rfs*7 0.24 TCGA-2Z-A9J1-01 12 10223995 10223995 C G CLEC1A Missense_Mutation p.R260S 0.47 tolerated(0.74) benign(0.041) TCGA-2Z-A9J1-01 12 109843836 109843836 C T MYO1H Missense_Mutation p.A304V 0.49 deleterious(0.01) benign(0.379) TCGA-2Z-A9J1-01 12 130921587 130921587 C T RIMBP2 Missense_Mutation p.A619T 0.25 tolerated(0.38) benign(0.001) TCGA-2Z-A9J1-01 12 22622701 22622701 T C C2CD5 Silent p.Q825Q 0.22 TCGA-2Z-A9J1-01 12 31256511 31256511 G C DDX11 Missense_Mutation p.R844S 0.52 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-2Z-A9J1-01 12 32735673 32735673 T C FGD4 Intron 0.30 TCGA-2Z-A9J1-01 12 53701653 53701655 GAA - AAAS In_Frame_Del p.F464del 0.44 TCGA-2Z-A9J1-01 12 55714634 55714634 T - OR6C1 Frame_Shift_Del p.S85Qfs*12 0.31 TCGA-2Z-A9J1-01 12 79988144 79988144 C G PAWR Missense_Mutation p.G301R 0.54 deleterious(0.04) possibly_damaging(0.781) TCGA-2Z-A9J1-01 13 36229093 36229093 A G NBEA Missense_Mutation p.I2692V 0.21 tolerated(0.09) benign(0.023) TCGA-2Z-A9J1-01 13 52854026 52854026 T C RP11-248G5.8 RNA 0.35 TCGA-2Z-A9J1-01 13 76381810 76381810 T G LMO7 Missense_Mutation p.F231C 0.27 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9J1-01 13 79219122 79219122 G T RNF219 Missense_Mutation p.P28H 0.07 deleterious(0) probably_damaging(1) TCGA-2Z-A9J1-01 14 64699969 64699969 C A ESR2 Missense_Mutation p.E493D 0.29 deleterious(0.02) probably_damaging(0.962) TCGA-2Z-A9J1-01 15 101906495 101906495 G - PCSK6 Frame_Shift_Del p.F587Lfs*2 0.22 TCGA-2Z-A9J1-01 15 41988958 41988958 G C MGA Missense_Mutation p.G584R 0.33 deleterious(0) possibly_damaging(0.675) TCGA-2Z-A9J1-01 16 2980631 2980631 G A FLYWCH1 Silent p.E181E 0.32 TCGA-2Z-A9J1-01 16 30099707 30099707 C G TBX6 Intron 0.43 TCGA-2Z-A9J1-01 16 57292497 57292497 C - PLLP Splice_Site p.X104_splice 0.14 TCGA-2Z-A9J1-01 16 71163576 71163576 C G HYDIN Silent p.L398L 0.48 TCGA-2Z-A9J1-01 17 27957753 27957753 G A SSH2 3'UTR 0.67 TCGA-2Z-A9J1-01 17 32964336 32964336 T C TMEM132E Silent p.P680P 0.24 TCGA-2Z-A9J1-01 17 38519536 38519536 C T GJD3 Missense_Mutation p.D178N 0.56 deleterious(0) probably_damaging(0.995) TCGA-2Z-A9J1-01 17 39657556 39657556 G T KRT13 Silent p.T443T 0.13 TCGA-2Z-A9J1-01 17 39958983 39958983 A T LEPREL4 3'UTR 0.75 TCGA-2Z-A9J1-01 17 7663108 7663108 G - DNAH2 Splice_Site p.X880_splice 0.17 TCGA-2Z-A9J1-01 17 79865660 79865660 G T PCYT2 Missense_Mutation p.H161N 0.61 tolerated(0.09) benign(0.149) TCGA-2Z-A9J1-01 18 15325909 15325909 T A RNU6-721P 5'Flank 0.26 TCGA-2Z-A9J1-01 19 1010328 1010328 G C TMEM259 3'UTR 0.42 TCGA-2Z-A9J1-01 19 12575506 12575506 A G ZNF709 Silent p.H410H 0.36 TCGA-2Z-A9J1-01 19 1371012 1371012 G A MUM1 Missense_Mutation p.A642T 0.32 tolerated(0.19) possibly_damaging(0.908) TCGA-2Z-A9J1-01 19 16974595 16974595 C T SIN3B Silent p.D489D 0.37 TCGA-2Z-A9J1-01 19 17471595 17471595 T - PLVAP Frame_Shift_Del p.N409Tfs*29 0.20 TCGA-2Z-A9J1-01 19 17988624 17988624 C T SLC5A5 Missense_Mutation p.A264V 0.05 deleterious(0) probably_damaging(0.997) TCGA-2Z-A9J1-01 19 18652713 18652713 T A FKBP8 Missense_Mutation p.D23V 0.32 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-2Z-A9J1-01 19 19106049 19106049 T - SUGP2 Frame_Shift_Del p.D1011Vfs*61 0.20 TCGA-2Z-A9J1-01 19 2343224 2343224 C A SPPL2B RNA 0.24 TCGA-2Z-A9J1-01 19 33600735 33600735 C T GPATCH1 Silent p.A466A 0.37 TCGA-2Z-A9J1-01 19 3449135 3449135 G T NFIC Missense_Mutation p.S361I 0.32 deleterious(0.01) probably_damaging(0.973) TCGA-2Z-A9J1-01 19 35770269 35770269 T A USF2 3'UTR 0.30 TCGA-2Z-A9J1-01 19 47226540 47226540 G A STRN4 Silent p.D539D 0.23 TCGA-2Z-A9J1-01 19 50270344 50270344 G T AP2A1 5'Flank 0.37 TCGA-2Z-A9J1-01 19 50270345 50270345 C G AP2A1 5'Flank 0.35 TCGA-2Z-A9J1-01 19 51961658 51961658 G A SIGLEC8 5'UTR 0.21 TCGA-2Z-A9J1-01 19 57839668 57839668 G A ZNF543 Missense_Mutation p.E280K 0.04 deleterious(0.05) probably_damaging(0.99) TCGA-2Z-A9J1-01 19 9678790 9678790 G A ZNF121 5'UTR 0.33 TCGA-2Z-A9J1-01 1 116519234 116519234 T C SLC22A15 5'UTR 0.33 TCGA-2Z-A9J1-01 1 1361730 1361730 G A TMEM88B Missense_Mutation p.A75T 0.37 tolerated(0.2) benign(0.279) TCGA-2Z-A9J1-01 1 144917856 144917856 A T PDE4DIP Missense_Mutation p.L477H 0.18 deleterious(0) probably_damaging(0.985) TCGA-2Z-A9J1-01 1 145816732 145816732 C T GPR89A Silent p.Q37Q 0.28 TCGA-2Z-A9J1-01 1 154067632 154067632 C G NUP210L Missense_Mutation p.A656P 0.36 tolerated(0.17) probably_damaging(0.994) TCGA-2Z-A9J1-01 1 157095086 157095086 G T ETV3 Missense_Mutation p.S362R 0.05 tolerated(0.32) benign(0.06) TCGA-2Z-A9J1-01 1 161009575 161009575 G A USF1 3'UTR 0.20 TCGA-2Z-A9J1-01 1 161009576 161009576 T G USF1 3'UTR 0.21 TCGA-2Z-A9J1-01 1 168282399 168282399 G T TBX19 3'UTR 0.43 TCGA-2Z-A9J1-01 1 16907425 16907425 T C NBPF1 Missense_Mutation p.K469R 0.06 deleterious(0) probably_damaging(0.969) TCGA-2Z-A9J1-01 1 17275371 17275371 A T CROCC Missense_Mutation p.Q929L 0.21 possibly_damaging(0.882) TCGA-2Z-A9J1-01 1 183543737 183543737 A T NCF2 Missense_Mutation p.F129Y 0.33 deleterious(0) benign(0.306) TCGA-2Z-A9J1-01 1 203452750 203452750 G T PRELP Silent p.L146L 0.35 TCGA-2Z-A9J1-01 1 38435391 38435391 G C SF3A3 Missense_Mutation p.T341S 0.41 deleterious(0.03) benign(0.132) TCGA-2Z-A9J1-01 1 42628612 42628612 C A GUCA2A Nonsense_Mutation p.E105* 0.40 TCGA-2Z-A9J1-01 1 65272954 65272954 A C RAVER2 Missense_Mutation p.N480H 0.36 tolerated(0.06) benign(0.047) TCGA-2Z-A9J1-01 1 76200537 76200537 C A ACADM Missense_Mutation p.T154N 0.37 deleterious(0.05) benign(0.296) TCGA-2Z-A9J1-01 20 47991224 47991224 A T KCNB1 Missense_Mutation p.N291K 0.28 deleterious(0) probably_damaging(1) TCGA-2Z-A9J1-01 20 57829325 57829325 G C ZNF831 Missense_Mutation p.G1521R 0.47 tolerated(0.38) benign(0.077) TCGA-2Z-A9J1-01 21 30378846 30378846 A T RWDD2B Silent p.V284V 0.44 TCGA-2Z-A9J1-01 21 34841130 34841131 TC - TMEM50B Frame_Shift_Del p.R21Kfs*22 0.23 TCGA-2Z-A9J1-01 22 38694925 38694925 A T CSNK1E Missense_Mutation p.Y251N 0.27 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-2Z-A9J1-01 2 112858240 112858240 T A TMEM87B Missense_Mutation p.I473N 0.71 tolerated(0.16) benign(0.091) TCGA-2Z-A9J1-01 2 180307830 180307880 TCTCTCTGGAATTGGGGGACTGGGTGGTGGGCTGCATTTTGTGGGTGAATG CTCTCTGGAATTGGGGGACTGGGTGGTGGGCTGCATTTTGTGGGTGAAT ZNF385B 3'UTR 0.28 TCGA-2Z-A9J1-01 2 20463043 20463043 T A PUM2 Missense_Mutation p.E712D 0.64 tolerated(0.11) benign(0.091) TCGA-2Z-A9J1-01 2 25467157 25467158 - G DNMT3A Frame_Shift_Ins p.Q573Pfs*5 0.37 TCGA-2Z-A9J1-01 2 40387976 40387976 G T SLC8A1 Missense_Mutation p.T733K 0.80 deleterious(0) benign(0.141) TCGA-2Z-A9J1-01 2 43451900 43451925 GCCCCCGGCGCCAGCAGGTCCTCGGC - ZFP36L2 Frame_Shift_Del p.A340Pfs*125 0.57 TCGA-2Z-A9J1-01 2 54839382 54839392 CATCTTGAGAA - SPTBN1 Frame_Shift_Del p.L130Gfs*4 0.67 TCGA-2Z-A9J1-01 2 88056393 88056393 C A PLGLB2 3'UTR 0.63 TCGA-2Z-A9J1-01 2 88427567 88427567 A G FABP1 5'UTR 0.76 TCGA-2Z-A9J1-01 3 140282957 140282957 T C CLSTN2 Silent p.S879S 0.07 TCGA-2Z-A9J1-01 3 195295856 195295856 G A APOD Missense_Mutation p.S162F 0.37 tolerated(0.53) benign(0.004) TCGA-2Z-A9J1-01 3 33894165 33894165 A G PDCD6IP Silent p.G614G 0.29 TCGA-2Z-A9J1-01 3 47476560 47476560 A T SCAP Missense_Mutation p.Y64N 0.31 deleterious(0) probably_damaging(0.979) TCGA-2Z-A9J1-01 3 9425906 9425906 A G THUMPD3 Missense_Mutation p.K416E 0.06 deleterious(0) possibly_damaging(0.686) TCGA-2Z-A9J1-01 3 99566979 99566979 C A FILIP1L Intron 0.31 TCGA-2Z-A9J1-01 4 125591071 125591071 G T ANKRD50 Missense_Mutation p.L1121I 0.32 tolerated(0.26) benign(0.005) TCGA-2Z-A9J1-01 4 170613433 170613433 T - CLCN3 Frame_Shift_Del p.P301Qfs*24 0.24 TCGA-2Z-A9J1-01 4 25785855 25785855 A T SEL1L3 Missense_Mutation p.S759T 0.33 deleterious(0.02) benign(0.338) TCGA-2Z-A9J1-01 5 153144063 153144063 A G GRIA1 Silent p.T641T 0.34 TCGA-2Z-A9J1-01 5 156915305 156915305 T G ADAM19 Missense_Mutation p.I840L 0.29 tolerated(0.92) benign(0.004) TCGA-2Z-A9J1-01 5 157285937 157285937 C G CLINT1 Splice_Site p.X14_splice 0.36 TCGA-2Z-A9J1-01 5 169532985 169532985 G T FOXI1 Silent p.A8A 0.32 TCGA-2Z-A9J1-01 5 179150705 179150705 G A CANX Silent p.P481P 0.32 TCGA-2Z-A9J1-01 5 41199944 41199944 A T C6 Missense_Mutation p.F124Y 0.33 tolerated(0.75) benign(0.037) TCGA-2Z-A9J1-01 5 53815717 53815717 C T SNX18 3'UTR 0.31 TCGA-2Z-A9J1-01 5 65000107 65000107 T A SGTB Missense_Mutation p.R125W 0.39 deleterious(0) probably_damaging(1) TCGA-2Z-A9J1-01 5 71490573 71490573 C G MAP1B Missense_Mutation p.S464C 0.29 unknown(0) TCGA-2Z-A9J1-01 5 75008248 75008248 A G POC5 Intron 0.38 TCGA-2Z-A9J1-01 5 78135234 78135234 G A ARSB Silent p.S386S 0.26 TCGA-2Z-A9J1-01 5 90669556 90669556 G T ARRDC3 Missense_Mutation p.P378Q 0.27 deleterious(0.03) probably_damaging(0.953) TCGA-2Z-A9J1-01 6 12123355 12123355 G A HIVEP1 Silent p.S1109S 0.33 TCGA-2Z-A9J1-01 6 121447579 121447579 C A TBC1D32 Silent p.V976V 0.23 TCGA-2Z-A9J1-01 6 150070960 150070960 G A PCMT1 Missense_Mutation p.V33I 0.33 tolerated_low_confidence(0.26) benign(0.228) TCGA-2Z-A9J1-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.05 TCGA-2Z-A9J1-01 6 158915829 158915829 A C TULP4 Missense_Mutation p.K607N 0.10 deleterious(0) benign(0.127) TCGA-2Z-A9J1-01 6 160453699 160453699 G T IGF2R Missense_Mutation p.E333D 0.40 tolerated(0.24) benign(0.013) TCGA-2Z-A9J1-01 6 18122832 18122832 C A NHLRC1 Silent p.A2A 0.37 TCGA-2Z-A9J1-01 6 3104478 3104478 A G RIPK1 Missense_Mutation p.N312S 0.31 tolerated(0.33) benign(0.008) TCGA-2Z-A9J1-01 6 36746667 36746667 G T CPNE5 Missense_Mutation p.P199H 0.36 deleterious(0) probably_damaging(1) TCGA-2Z-A9J1-01 6 42179572 42179572 A T MRPS10 Missense_Mutation p.S90R 0.34 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9J1-01 7 102108717 102108717 T A LRWD1 Missense_Mutation p.V271E 0.18 deleterious(0) benign(0.096) TCGA-2Z-A9J1-01 7 105738144 105738144 G A SYPL1 Missense_Mutation p.P150S 0.36 deleterious(0) probably_damaging(0.948) TCGA-2Z-A9J1-01 7 119915439 119915439 G T KCND2 Silent p.A251A 0.29 TCGA-2Z-A9J1-01 7 128399077 128399077 G C CALU Missense_Mutation p.D198H 0.32 deleterious(0.02) possibly_damaging(0.464) TCGA-2Z-A9J1-01 7 135304279 135304279 T G NUP205 Missense_Mutation p.S1358A 0.53 tolerated(1) benign(0.001) TCGA-2Z-A9J1-01 7 155595950 155595950 A G SHH Missense_Mutation p.Y345H 0.24 deleterious(0) probably_damaging(0.995) TCGA-2Z-A9J1-01 7 23221710 23221710 C T NUPL2 Silent p.A2A 0.24 TCGA-2Z-A9J1-01 7 37923905 37923905 A T NME8 Missense_Mutation p.D332V 0.21 deleterious(0) probably_damaging(0.936) TCGA-2Z-A9J1-01 7 44026238 44026238 G T POLR2J4 RNA 0.59 TCGA-2Z-A9J1-01 7 92732597 92732597 A T SAMD9 Nonsense_Mutation p.C938* 0.51 TCGA-2Z-A9J1-01 7 95025675 95025675 C A PON3 5'Flank 0.28 TCGA-2Z-A9J1-01 8 13251117 13251117 G C DLC1 Missense_Mutation p.T420R 0.34 tolerated_low_confidence(0.2) benign(0.165) TCGA-2Z-A9J1-01 8 1893687 1893687 C G ARHGEF10 Missense_Mutation p.S1088C 0.34 deleterious(0) probably_damaging(0.99) TCGA-2Z-A9J1-01 8 27398077 27398077 T - EPHX2 Frame_Shift_Del p.F429Lfs*2 0.24 TCGA-2Z-A9J1-01 8 42262963 42262963 T - VDAC3 Frame_Shift_Del p.F280Lfs*9 0.23 TCGA-2Z-A9J1-01 9 101706136 101706136 G T COL15A1 5'UTR 0.36 TCGA-2Z-A9J1-01 9 110251584 110251585 - A KLF4 5'UTR 0.25 TCGA-2Z-A9J1-01 9 123898196 123898196 A G CNTRL Missense_Mutation p.N713S 0.38 benign(0.001) TCGA-2Z-A9J1-01 9 126176696 126176696 G C DENND1A Intron 0.33 TCGA-2Z-A9J1-01 9 139235387 139235387 C A GPSM1 Missense_Mutation p.L382I 0.35 deleterious(0.01) benign(0.285) TCGA-2Z-A9J1-01 X 100183149 100183149 C T XKRX Missense_Mutation p.A49T 0.78 tolerated(0.62) possibly_damaging(0.589) TCGA-2Z-A9J1-01 X 118673631 118673631 T G CXorf56 3'UTR 0.62 TCGA-2Z-A9J1-01 X 129063601 129063601 C A UTP14A 3'UTR 0.71 TCGA-2Z-A9J1-01 X 152826188 152826188 C A ATP2B3 Missense_Mutation p.P965H 0.64 deleterious(0) probably_damaging(1) TCGA-2Z-A9J1-01 X 1584748 1584748 G C P2RY8 Missense_Mutation p.A235G 0.40 deleterious(0.02) possibly_damaging(0.795) TCGA-2Z-A9J2-01 10 127411636 127411636 G T EDRF1 Splice_Site p.X106_splice 0.06 TCGA-2Z-A9J2-01 10 17110184 17110184 A G CUBN Silent p.L963L 0.36 TCGA-2Z-A9J2-01 10 17659300 17659301 - CCGCTGC PTPLA Frame_Shift_Ins p.S14Qfs*98 0.21 TCGA-2Z-A9J2-01 11 5443619 5443619 G T OR51Q1 Silent p.L63L 0.09 TCGA-2Z-A9J2-01 11 55371658 55371658 C T OR4C11 Silent p.L64L 0.63 TCGA-2Z-A9J2-01 11 60891376 60891376 C T CD5 Nonsense_Mutation p.Q416* 0.37 TCGA-2Z-A9J2-01 11 73388571 73388579 AAGTAGGCT - RAB6A 3'UTR 0.22 TCGA-2Z-A9J2-01 11 7982378 7982378 T G NLRP10 Missense_Mutation p.K261Q 0.33 tolerated(0.48) benign(0.003) TCGA-2Z-A9J2-01 11 93535078 93535078 A G MED17 Missense_Mutation p.D469G 0.08 tolerated(0.06) benign(0.275) TCGA-2Z-A9J2-01 12 105538550 105538550 T C KIAA1033 Missense_Mutation p.L745P 0.52 deleterious(0) probably_damaging(0.962) TCGA-2Z-A9J2-01 12 23818459 23818459 G A SOX5 Missense_Mutation p.P284S 0.09 deleterious(0.01) probably_damaging(0.926) TCGA-2Z-A9J2-01 12 2967807 2967812 CTGTAG - FOXM1 In_Frame_Del p.L800_Q801del 0.40 TCGA-2Z-A9J2-01 12 42840047 42840047 T G PPHLN1 Missense_Mutation p.N435K 0.25 deleterious_low_confidence(0) benign(0.403) TCGA-2Z-A9J2-01 12 49942732 49942732 G A KCNH3 Missense_Mutation p.R415Q 0.25 tolerated(0.53) benign(0.001) TCGA-2Z-A9J2-01 12 5154784 5154784 G T KCNA5 Missense_Mutation p.V491F 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-2Z-A9J2-01 12 56646601 56646601 G - ANKRD52 Frame_Shift_Del p.G423Afs*21 0.26 TCGA-2Z-A9J2-01 12 74933630 74933630 T G ATXN7L3B 3'UTR 0.48 TCGA-2Z-A9J2-01 13 24797769 24797769 G A SPATA13 Silent p.V234V 0.28 TCGA-2Z-A9J2-01 13 46537830 46537830 G A ZC3H13 3'UTR 0.31 TCGA-2Z-A9J2-01 13 46537831 46537831 A T ZC3H13 3'UTR 0.31 TCGA-2Z-A9J2-01 14 101347376 101347376 G A RTL1 Silent p.D1250D 0.10 TCGA-2Z-A9J2-01 14 105927224 105927224 G - MTA1 Frame_Shift_Del p.A293Pfs*28 0.27 TCGA-2Z-A9J2-01 15 51799330 51799330 C T DMXL2 Splice_Site p.X922_splice 0.28 TCGA-2Z-A9J2-01 16 58583738 58583738 A T CNOT1 Missense_Mutation p.M1136K 0.25 deleterious(0) benign(0.065) TCGA-2Z-A9J2-01 16 58615281 58615281 T C CNOT1 Missense_Mutation p.I395V 0.36 tolerated(0.22) benign(0.001) TCGA-2Z-A9J2-01 17 1082993 1082993 G C ABR Missense_Mutation p.P10R 0.22 deleterious_low_confidence(0) benign(0.102) TCGA-2Z-A9J2-01 17 15961343 15961343 G A NCOR1 Missense_Mutation p.H2016Y 0.12 benign(0.243) TCGA-2Z-A9J2-01 17 42979927 42979927 G A CCDC103 Silent p.P157P 0.21 TCGA-2Z-A9J2-01 17 4838022 4838022 C T GP1BA 3'UTR 0.20 TCGA-2Z-A9J2-01 17 65144699 65144700 - T HELZ Frame_Shift_Ins p.H869Qfs*2 0.29 TCGA-2Z-A9J2-01 17 73996327 73996327 G A TEN1 Missense_Mutation p.R119Q 0.50 deleterious(0.02) benign(0.205) TCGA-2Z-A9J2-01 17 7689641 7689641 C G DNAH2 Missense_Mutation p.P2110R 0.65 probably_damaging(0.913) TCGA-2Z-A9J2-01 18 14479291 14479291 G A CXADRP3 RNA 0.35 TCGA-2Z-A9J2-01 18 77662630 77662630 A - PQLC1 3'UTR 0.41 TCGA-2Z-A9J2-01 19 1255611 1255611 T C MIDN Silent p.T349T 0.36 TCGA-2Z-A9J2-01 19 46029516 46029516 G C VASP 3'UTR 0.48 TCGA-2Z-A9J2-01 19 56701355 56701355 G - ZSCAN5B Frame_Shift_Del p.C444Afs*11 0.25 TCGA-2Z-A9J2-01 19 6664867 6664867 T A TNFSF14 3'UTR 0.21 TCGA-2Z-A9J2-01 1 100573433 100573433 T A SASS6 Missense_Mutation p.E330V 0.36 deleterious(0) probably_damaging(0.975) TCGA-2Z-A9J2-01 1 10394605 10394605 G A KIF1B Silent p.L938L 0.41 TCGA-2Z-A9J2-01 1 10596271 10596271 T G PEX14 Missense_Mutation p.I29S 0.38 deleterious(0) possibly_damaging(0.688) TCGA-2Z-A9J2-01 1 13717080 13717080 A T PRAMEF17 Silent p.S189S 0.12 TCGA-2Z-A9J2-01 1 159912854 159912854 C T IGSF9 Missense_Mutation p.R49Q 0.06 tolerated(0.63) benign(0.014) TCGA-2Z-A9J2-01 1 173503688 173503688 C T SLC9C2 Missense_Mutation p.V637I 0.48 tolerated(0.59) benign(0.064) TCGA-2Z-A9J2-01 1 180882414 180882414 C T KIAA1614 Missense_Mutation p.A12V 0.28 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9J2-01 1 198828249 198828249 C T MIR181A1 RNA 0.09 TCGA-2Z-A9J2-01 1 204955212 204955212 G A NFASC Intron 0.13 TCGA-2Z-A9J2-01 1 229477986 229477986 C T CCSAP Missense_Mutation p.C76Y 0.56 tolerated(0.11) unknown(0) TCGA-2Z-A9J2-01 1 235416071 235416072 - T ARID4B Frame_Shift_Ins p.G110Rfs*7 0.22 TCGA-2Z-A9J2-01 1 27106010 27106011 - C ARID1A Frame_Shift_Ins p.P1876Tfs*25 0.10 TCGA-2Z-A9J2-01 1 29064038 29064038 C A YTHDF2 Intron 0.39 TCGA-2Z-A9J2-01 1 35260710 35260710 G C GJA4 Missense_Mutation p.R299T 0.37 tolerated(0.37) benign(0.001) TCGA-2Z-A9J2-01 1 41486067 41486067 G T SLFNL1 Missense_Mutation p.P89Q 0.26 deleterious(0.04) probably_damaging(0.978) TCGA-2Z-A9J2-01 1 43232751 43232753 CGC - LEPRE1 5'Flank 0.15 TCGA-2Z-A9J2-01 1 43896443 43896443 G C SZT2 Missense_Mutation p.S1529T 0.32 tolerated(1) benign(0.023) TCGA-2Z-A9J2-01 1 47279896 47279896 A G CYP4B1 Missense_Mutation p.E264G 0.34 tolerated(0.05) benign(0.009) TCGA-2Z-A9J2-01 1 52941009 52941009 A C ZCCHC11 Missense_Mutation p.M741R 0.14 tolerated(0.53) benign(0.037) TCGA-2Z-A9J2-01 1 94650461 94650461 G T ARHGAP29 Silent p.A692A 0.13 TCGA-2Z-A9J2-01 1 984390 984390 G T AGRN Missense_Mutation p.G1417C 0.27 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9J2-01 20 1903069 1903069 G C SIRPA Missense_Mutation p.E289Q 0.07 deleterious(0.02) probably_damaging(0.94) TCGA-2Z-A9J2-01 20 34240509 34240509 A G RBM12 Silent p.A912A 0.15 TCGA-2Z-A9J2-01 21 46327988 46327988 C A ITGB2 Intron 0.30 TCGA-2Z-A9J2-01 22 23524065 23524065 G T BCR Missense_Mutation p.E306D 0.56 tolerated_low_confidence(0.84) possibly_damaging(0.636) TCGA-2Z-A9J2-01 22 24896185 24896185 T C UPB1 Missense_Mutation p.V72A 0.24 deleterious(0) possibly_damaging(0.907) TCGA-2Z-A9J2-01 22 42912116 42912116 G A RRP7A Silent p.T81T 0.21 TCGA-2Z-A9J2-01 22 50617455 50617455 C A PANX2 Missense_Mutation p.P595T 0.32 tolerated_low_confidence(0.4) benign(0) TCGA-2Z-A9J2-01 2 125405359 125405359 A T CNTNAP5 Missense_Mutation p.Q633L 0.07 tolerated(0.06) benign(0.007) TCGA-2Z-A9J2-01 2 131981602 131981602 G A POTEE Missense_Mutation p.E266K 0.17 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-2Z-A9J2-01 2 135738784 135738784 T C MAP3K19 Missense_Mutation p.Y1176C 0.37 deleterious(0) probably_damaging(1) TCGA-2Z-A9J2-01 2 179396967 179396967 A C TTN Missense_Mutation p.F34792C 0.26 TCGA-2Z-A9J2-01 2 179427583 179427583 A G TTN Missense_Mutation p.V27759A 0.07 TCGA-2Z-A9J2-01 2 216982471 216982471 C A XRCC5 Missense_Mutation p.L108M 0.29 tolerated(0.05) possibly_damaging(0.789) TCGA-2Z-A9J2-01 2 235950616 235950616 A T SH3BP4 Silent p.I401I 0.27 TCGA-2Z-A9J2-01 2 30863435 30863435 T A LCLAT1 Missense_Mutation p.Y399N 0.10 deleterious(0.02) possibly_damaging(0.482) TCGA-2Z-A9J2-01 2 62729639 62729639 A G TMEM17 Missense_Mutation p.I84T 0.06 deleterious(0.02) benign(0.186) TCGA-2Z-A9J2-01 2 86669203 86669203 A G KDM3A Silent p.V11V 0.19 TCGA-2Z-A9J2-01 3 113125861 113125861 G A WDR52 Silent p.T306T 0.19 TCGA-2Z-A9J2-01 3 161220933 161220933 G A OTOL1 Missense_Mutation p.A213T 0.24 tolerated(0.57) unknown(0) TCGA-2Z-A9J2-01 3 182987531 182987531 G T B3GNT5 5'UTR 0.13 TCGA-2Z-A9J2-01 3 187446278 187446278 C A BCL6 Missense_Mutation p.M470I 0.48 tolerated(0.22) benign(0.001) TCGA-2Z-A9J2-01 3 38158502 38158502 T C DLEC1 Missense_Mutation p.S1406P 0.27 deleterious(0) probably_damaging(0.994) TCGA-2Z-A9J2-01 3 52443600 52443600 T C BAP1 Missense_Mutation p.E31G 0.36 deleterious(0) probably_damaging(0.968) TCGA-2Z-A9J2-01 3 52813055 52813055 C A ITIH1 Missense_Mutation p.L135I 0.26 deleterious(0.02) probably_damaging(0.993) TCGA-2Z-A9J2-01 4 74863279 74863279 C A CXCL5 3'UTR 0.26 TCGA-2Z-A9J2-01 4 77053755 77053755 T - NUP54 Frame_Shift_Del p.Q276Hfs*4 0.19 TCGA-2Z-A9J2-01 4 87724917 87724947 TCCCTCTGGTAAATACACGGGTGCCAACTTA ACCC PTPN13 In_Frame_Del p.S2194_L2202del 0.30 TCGA-2Z-A9J2-01 5 112420999 112420999 C A MCC Missense_Mutation p.E469D 0.39 deleterious(0.01) probably_damaging(0.979) TCGA-2Z-A9J2-01 5 11384817 11384817 C T CTNND2 Silent p.L379L 0.08 TCGA-2Z-A9J2-01 5 126862329 126862329 T A PRRC1 Silent p.I171I 0.07 TCGA-2Z-A9J2-01 5 140797588 140797588 A C PCDHGB7 Silent p.L54L 0.35 TCGA-2Z-A9J2-01 5 148386485 148386485 C G SH3TC2 Missense_Mutation p.V1212L 0.23 deleterious(0.04) benign(0.088) TCGA-2Z-A9J2-01 5 150090652 150090652 A C DCTN4 3'UTR 0.17 TCGA-2Z-A9J2-01 5 153433645 153433645 A C MFAP3 3'UTR 0.37 TCGA-2Z-A9J2-01 5 173316600 173316600 G A CPEB4 5'UTR 0.38 TCGA-2Z-A9J2-01 5 90012405 90012405 C A GPR98 Nonsense_Mutation p.Y3102* 0.11 TCGA-2Z-A9J2-01 6 105781315 105781315 C G PREP Missense_Mutation p.G297R 0.30 deleterious(0) possibly_damaging(0.76) TCGA-2Z-A9J2-01 6 109689673 109689673 C G CD164 3'UTR 0.32 TCGA-2Z-A9J2-01 6 29910593 29910593 C G HLA-A Missense_Mutation p.R45G 0.15 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-2Z-A9J2-01 6 31905164 31905164 C A CFB Missense_Mutation p.Q200K 0.28 deleterious(0.04) benign(0.017) TCGA-2Z-A9J2-01 6 42666009 42666016 GGGAGGGG - PRPH2 3'UTR 0.24 TCGA-2Z-A9J2-01 7 124387366 124387366 A G GPR37 Missense_Mutation p.L352S 0.11 deleterious(0) probably_damaging(1) TCGA-2Z-A9J2-01 7 138982728 138982728 A C UBN2 3'UTR 0.45 TCGA-2Z-A9J2-01 7 142983223 142983223 T C TMEM139 Missense_Mutation p.F58S 0.33 tolerated(0.09) benign(0.055) TCGA-2Z-A9J2-01 7 148712027 148712027 C A PDIA4 Missense_Mutation p.D195Y 0.20 deleterious(0) probably_damaging(0.922) TCGA-2Z-A9J2-01 7 150500886 150500886 T C TMEM176A Missense_Mutation p.L174P 0.43 deleterious(0.02) possibly_damaging(0.879) TCGA-2Z-A9J2-01 7 99565822 99565822 A T AZGP1 Missense_Mutation p.L190Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9J2-01 8 105257207 105257207 A T RIMS2 Missense_Mutation p.E1133V 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-2Z-A9J2-01 8 29024953 29024953 G T KIF13B Silent p.A365A 0.14 TCGA-2Z-A9J2-01 8 41906305 41906305 G T KAT6A Nonsense_Mutation p.S64* 0.23 TCGA-2Z-A9J2-01 8 77776082 77776082 A T ZFHX4 Nonsense_Mutation p.K3378* 0.17 TCGA-2Z-A9J2-01 9 27566893 27566893 C T C9orf72 Missense_Mutation p.E76K 0.33 tolerated(0.14) possibly_damaging(0.879) TCGA-2Z-A9J2-01 9 33167305 33167305 A T B4GALT1 5'UTR 0.25 TCGA-2Z-A9J2-01 9 74345097 74345097 T C TMEM2 Missense_Mutation p.T616A 0.21 deleterious(0.01) benign(0.011) TCGA-2Z-A9J2-01 9 96421819 96421819 C T PHF2 Silent p.L422L 0.29 TCGA-2Z-A9J2-01 X 117583098 117583098 C G WDR44 3'UTR 0.70 TCGA-2Z-A9J2-01 X 53560071 53560071 G A HUWE1 3'UTR 0.24 TCGA-2Z-A9J2-01 X 57475117 57475117 C G FAAH2 Silent p.V463V 0.51 TCGA-2Z-A9J2-01 X 77913324 77913324 C T ZCCHC5 Silent p.Q198Q 0.07 TCGA-2Z-A9J3-01 10 100147000 100147001 GA - PYROXD2 Frame_Shift_Del p.L504Hfs*72 0.36 TCGA-2Z-A9J3-01 10 104018748 104018748 G T GBF1 Missense_Mutation p.G18V 0.47 tolerated(0.13) benign(0.024) TCGA-2Z-A9J3-01 10 107016678 107016678 A - SORCS3 Frame_Shift_Del p.R1148Gfs*20 0.25 TCGA-2Z-A9J3-01 10 129846027 129846027 G C PTPRE Splice_Site p.X70_splice 0.48 TCGA-2Z-A9J3-01 10 17645619 17645619 A T PTPLA Silent p.T141T 0.06 TCGA-2Z-A9J3-01 10 23729477 23729477 A G OTUD1 Missense_Mutation p.E364G 0.35 deleterious(0) probably_damaging(0.967) TCGA-2Z-A9J3-01 10 3827237 3827260 GCGAGGGCGGCGAGGCGCGCGGTG - KLF6 5'UTR 0.27 TCGA-2Z-A9J3-01 10 50944091 50944100 GGATGGTCAT - OGDHL Frame_Shift_Del p.M960* 0.37 TCGA-2Z-A9J3-01 10 73992993 73992993 T A ANAPC16 3'UTR 0.39 TCGA-2Z-A9J3-01 11 113853914 113853914 G T HTR3A Missense_Mutation p.K155N 0.30 deleterious(0.02) probably_damaging(0.969) TCGA-2Z-A9J3-01 11 119025032 119025032 G T ABCG4 Missense_Mutation p.R140L 0.46 deleterious(0) possibly_damaging(0.708) TCGA-2Z-A9J3-01 11 34475367 34475367 A C CAT Missense_Mutation p.D202A 0.44 deleterious(0) probably_damaging(0.95) TCGA-2Z-A9J3-01 11 44129381 44129381 C T EXT2 Missense_Mutation p.T73I 0.38 tolerated(0.12) possibly_damaging(0.491) TCGA-2Z-A9J3-01 11 46690086 46690086 T A ATG13 Missense_Mutation p.F430Y 0.53 deleterious(0.01) probably_damaging(0.942) TCGA-2Z-A9J3-01 11 55682005 55682005 G - OR5W2 Frame_Shift_Del p.N19Ifs*5 0.28 TCGA-2Z-A9J3-01 11 6579352 6579352 C A DNHD1 Missense_Mutation p.L2943M 0.39 probably_damaging(0.999) TCGA-2Z-A9J3-01 11 7672127 7672127 G T PPFIBP2 Missense_Mutation p.W726C 0.44 deleterious(0) probably_damaging(1) TCGA-2Z-A9J3-01 11 7818479 7818479 A C OR5P2 Missense_Mutation p.L4R 0.53 deleterious_low_confidence(0.01) benign(0.03) TCGA-2Z-A9J3-01 11 85445743 85445743 G T SYTL2 Missense_Mutation p.T209N 0.42 tolerated(0.33) benign(0.001) TCGA-2Z-A9J3-01 12 100042118 100042118 A C FAM71C Silent p.R56R 0.49 TCGA-2Z-A9J3-01 12 102271585 102271585 G A DRAM1 Silent p.R6R 0.30 TCGA-2Z-A9J3-01 12 104031881 104031881 A G STAB2 Missense_Mutation p.E266G 0.38 deleterious(0.02) possibly_damaging(0.608) TCGA-2Z-A9J3-01 12 122674790 122674790 C T LRRC43 Missense_Mutation p.P259L 0.52 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9J3-01 12 14959531 14959531 G A SMCO3 Silent p.C28C 0.50 TCGA-2Z-A9J3-01 12 5153376 5153376 G A KCNA5 Silent p.E21E 0.31 TCGA-2Z-A9J3-01 12 53432173 53432173 T C EIF4B Silent p.S518S 0.51 TCGA-2Z-A9J3-01 12 58201151 58201151 A T AVIL Missense_Mutation p.F485Y 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-2Z-A9J3-01 12 7528025 7528025 T C CD163L1 Silent p.G951G 0.38 TCGA-2Z-A9J3-01 13 25026604 25026604 A G PARP4 Missense_Mutation p.L985P 0.52 deleterious(0) possibly_damaging(0.665) TCGA-2Z-A9J3-01 13 33332296 33332298 TGG - PDS5B In_Frame_Del p.M1043_V1044delinsI 0.37 TCGA-2Z-A9J3-01 13 53298215 53298215 C T LECT1 Missense_Mutation p.E129K 0.53 deleterious(0.03) possibly_damaging(0.613) TCGA-2Z-A9J3-01 13 76195877 76195877 G T RP11-173B14.5 Intron 0.24 TCGA-2Z-A9J3-01 13 76378589 76378589 C A LMO7 Missense_Mutation p.L43M 0.37 deleterious(0) probably_damaging(0.954) TCGA-2Z-A9J3-01 13 77743746 77743746 C T MYCBP2 Intron 0.39 TCGA-2Z-A9J3-01 14 102549303 102549321 GCTATGTATGACTAAGCTT - HSP90AA1 Intron 0.39 TCGA-2Z-A9J3-01 14 20846278 20846278 G A TEP1 Missense_Mutation p.R1876W 0.59 deleterious(0.03) probably_damaging(0.965) TCGA-2Z-A9J3-01 14 24608097 24608097 C A PSME1 3'UTR 0.41 TCGA-2Z-A9J3-01 14 36103901 36103901 G C RALGAPA1 Missense_Mutation p.S1452R 0.43 deleterious(0.01) benign(0.311) TCGA-2Z-A9J3-01 14 54417256 54417256 G T BMP4 Missense_Mutation p.L241I 0.42 tolerated(0.2) benign(0.073) TCGA-2Z-A9J3-01 14 62536436 62536436 T G SYT16 Silent p.S213S 0.41 TCGA-2Z-A9J3-01 14 64548159 64548159 A G SYNE2 Splice_Site p.X3783_splice 0.41 TCGA-2Z-A9J3-01 14 68195931 68195931 G T RDH12 Missense_Mutation p.V228L 0.42 tolerated(1) benign(0.007) TCGA-2Z-A9J3-01 14 75904790 75904790 A G JDP2 Missense_Mutation p.K67R 0.30 tolerated(0.14) benign(0.006) TCGA-2Z-A9J3-01 14 76173407 76173407 T G TTLL5 Missense_Mutation p.I211S 0.32 deleterious(0) probably_damaging(0.923) TCGA-2Z-A9J3-01 14 93429129 93429129 G T ITPK1 Missense_Mutation p.L144M 0.29 tolerated(0.1) benign(0.442) TCGA-2Z-A9J3-01 15 42163671 42163671 G C SPTBN5 Silent p.G1783G 0.40 TCGA-2Z-A9J3-01 15 43815125 43815125 A G MAP1A Missense_Mutation p.K485R 0.49 probably_damaging(0.997) TCGA-2Z-A9J3-01 15 51749533 51749533 C A DMXL2 Missense_Mutation p.A2756S 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-2Z-A9J3-01 15 79760702 79760702 G T KIAA1024 Silent p.V909V 0.08 TCGA-2Z-A9J3-01 15 96875731 96875731 T C NR2F2 Missense_Mutation p.Y133H 0.46 tolerated(0.08) probably_damaging(0.987) TCGA-2Z-A9J3-01 16 1557667 1557667 T C TELO2 Missense_Mutation p.L786P 0.15 deleterious(0) probably_damaging(0.996) TCGA-2Z-A9J3-01 16 20451774 20451774 G T ACSM5 3'UTR 0.58 TCGA-2Z-A9J3-01 16 21974207 21974208 - T UQCRC2 Splice_Site p.X172_splice 0.31 TCGA-2Z-A9J3-01 16 22558259 22558259 T C RP11-368J21.3 RNA 0.12 TCGA-2Z-A9J3-01 16 23203834 23203834 C A SCNN1G Nonsense_Mutation p.C260* 0.33 TCGA-2Z-A9J3-01 16 3119208 3119208 C A IL32 Missense_Mutation p.A140E 0.20 tolerated(0.13) benign(0.001) TCGA-2Z-A9J3-01 16 51171131 51171131 C T SALL1 Silent p.E1289E 0.29 TCGA-2Z-A9J3-01 16 70170204 70170204 A G PDPR Missense_Mutation p.M369V 0.14 tolerated(0.52) benign(0.009) TCGA-2Z-A9J3-01 17 1486541 1486541 A G SLC43A2 Missense_Mutation p.V436A 0.20 deleterious(0) benign(0.405) TCGA-2Z-A9J3-01 17 16004686 16004686 T A NCOR1 Missense_Mutation p.R856S 0.58 benign(0.008) TCGA-2Z-A9J3-01 17 26723163 26723163 C A SARM1 Intron 0.57 TCGA-2Z-A9J3-01 17 36636124 36636124 G C ARHGAP23 Missense_Mutation p.D877H 0.31 tolerated(0.07) possibly_damaging(0.45) TCGA-2Z-A9J3-01 17 46799114 46799114 A G PRAC1 3'UTR 0.28 TCGA-2Z-A9J3-01 17 57650554 57650554 T A DHX40 Missense_Mutation p.S168R 0.03 deleterious(0.01) probably_damaging(0.95) TCGA-2Z-A9J3-01 17 60758243 60758243 C A MRC2 Silent p.I852I 0.61 TCGA-2Z-A9J3-01 17 65924496 65924496 C G BPTF Missense_Mutation p.T1926R 0.34 possibly_damaging(0.568) TCGA-2Z-A9J3-01 17 66538847 66538847 A C FAM20A Missense_Mutation p.F306V 0.23 deleterious(0) probably_damaging(0.954) TCGA-2Z-A9J3-01 17 74391896 74391896 C T UBE2O Silent p.K952K 0.31 TCGA-2Z-A9J3-01 17 80159471 80159471 T A CCDC57 Missense_Mutation p.Q117L 0.08 deleterious(0.02) benign(0.14) TCGA-2Z-A9J3-01 18 10487720 10487720 C A APCDD1 Nonsense_Mutation p.C410* 0.44 TCGA-2Z-A9J3-01 18 53018225 53018225 G A TCF4 Missense_Mutation p.L229F 0.43 deleterious(0.01) possibly_damaging(0.89) TCGA-2Z-A9J3-01 18 677380 677380 A - ENOSF1 Frame_Shift_Del p.F378Lfs*29 0.29 TCGA-2Z-A9J3-01 19 11727866 11727866 G A ZNF627 Missense_Mutation p.R183Q 0.48 tolerated(1) probably_damaging(0.994) TCGA-2Z-A9J3-01 19 1272240 1272240 A G CIRBP Intron 0.30 TCGA-2Z-A9J3-01 19 12805491 12805491 A T FBXW9 Missense_Mutation p.L199M 0.38 tolerated(0.06) probably_damaging(0.992) TCGA-2Z-A9J3-01 19 17751432 17751432 C T UNC13A Missense_Mutation p.G892E 0.44 deleterious(0) probably_damaging(1) TCGA-2Z-A9J3-01 19 35828843 35828843 G A CD22 Missense_Mutation p.D302N 0.32 tolerated(0.22) benign(0.024) TCGA-2Z-A9J3-01 19 44932512 44932512 T A ZNF229 Missense_Mutation p.Q815L 0.48 deleterious(0) possibly_damaging(0.88) TCGA-2Z-A9J3-01 19 48918125 48918125 C A GRIN2D Missense_Mutation p.P473T 0.44 tolerated(0.67) benign(0.044) TCGA-2Z-A9J3-01 19 49208621 49208621 C T FUT2 3'UTR 0.35 TCGA-2Z-A9J3-01 19 49316501 49316502 - C HSD17B14 Frame_Shift_Ins p.A249Cfs*55 0.30 TCGA-2Z-A9J3-01 19 49341323 49341323 G T PLEKHA4 Silent p.L676L 0.49 TCGA-2Z-A9J3-01 19 50832431 50832431 A G KCNC3 5'UTR 0.58 TCGA-2Z-A9J3-01 19 56153833 56153833 T G ZNF580 5'UTR 0.38 TCGA-2Z-A9J3-01 19 57035735 57035735 A C ZNF471 Missense_Mutation p.Q100P 0.48 tolerated(0.09) benign(0.001) TCGA-2Z-A9J3-01 19 7619899 7619899 T C PNPLA6 Missense_Mutation p.S929P 0.35 deleterious(0) probably_damaging(0.97) TCGA-2Z-A9J3-01 1 10338126 10338126 G T KIF1B Nonsense_Mutation p.E368* 0.37 TCGA-2Z-A9J3-01 1 114450642 114450643 - A DCLRE1B Nonsense_Mutation p.Y123* 0.27 TCGA-2Z-A9J3-01 1 158622405 158622405 C T SPTA1 Missense_Mutation p.R1076H 0.39 deleterious(0.05) probably_damaging(0.912) TCGA-2Z-A9J3-01 1 160326855 160326855 G C NCSTN Missense_Mutation p.G607R 0.44 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9J3-01 1 201174369 201174369 C - IGFN1 Frame_Shift_Del p.P360Lfs*4 0.27 TCGA-2Z-A9J3-01 1 203017839 203017839 G A PPFIA4 5'Flank 0.43 TCGA-2Z-A9J3-01 1 213302993 213302993 C - RPS6KC1 Frame_Shift_Del p.S199Wfs*6 0.21 TCGA-2Z-A9J3-01 1 230846200 230846200 C T AGT Missense_Mutation p.V133I 0.34 tolerated(0.56) benign(0.008) TCGA-2Z-A9J3-01 1 245319611 245319611 C T KIF26B Missense_Mutation p.P31S 0.51 tolerated_low_confidence(0.82) benign(0.07) TCGA-2Z-A9J3-01 1 25889207 25889207 G A LDLRAP1 Missense_Mutation p.E178K 0.33 tolerated(0.1) benign(0.199) TCGA-2Z-A9J3-01 1 33402549 33402549 C G RNF19B Missense_Mutation p.G686A 0.39 tolerated_low_confidence(0.15) benign(0.004) TCGA-2Z-A9J3-01 1 38192854 38192854 G C EPHA10 Silent p.P564P 0.34 TCGA-2Z-A9J3-01 1 66798100 66798100 A C PDE4B Intron 0.49 TCGA-2Z-A9J3-01 1 85741991 85741991 T G BCL10 Missense_Mutation p.E15D 0.56 tolerated(0.14) benign(0.115) TCGA-2Z-A9J3-01 1 89473418 89473418 G A GBP3 Silent p.L593L 0.37 TCGA-2Z-A9J3-01 1 91404516 91404516 T G ZNF644 Missense_Mutation p.S799R 0.45 tolerated_low_confidence(0.16) benign(0.031) TCGA-2Z-A9J3-01 20 23805942 23805942 A T CST2 Missense_Mutation p.Y83N 0.40 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9J3-01 20 32868818 32868818 G T AHCY 3'UTR 0.15 TCGA-2Z-A9J3-01 20 44402936 44402936 A G WFDC3 3'UTR 0.68 TCGA-2Z-A9J3-01 20 48562762 48562762 T A RNF114 Missense_Mutation p.F163Y 0.26 tolerated(1) benign(0) TCGA-2Z-A9J3-01 21 34707868 34707868 G A IFNAR1 Missense_Mutation p.D39N 0.38 tolerated(0.41) benign(0.016) TCGA-2Z-A9J3-01 21 34707892 34707892 C T IFNAR1 Silent p.L47L 0.39 TCGA-2Z-A9J3-01 21 38865374 38865374 T C DYRK1A Missense_Mutation p.M336T 0.39 tolerated(0.11) benign(0.003) TCGA-2Z-A9J3-01 21 45999605 45999605 C T KRTAP10-5 3'UTR 0.25 TCGA-2Z-A9J3-01 22 31331124 31331124 G A MORC2 Missense_Mutation p.P551S 0.48 deleterious(0.04) possibly_damaging(0.629) TCGA-2Z-A9J3-01 22 36702564 36702570 TGCGGAA - MYH9 Frame_Shift_Del p.F643Lfs*13 0.31 TCGA-2Z-A9J3-01 2 112705128 112705128 C T MERTK Silent p.S247S 0.37 TCGA-2Z-A9J3-01 2 11924034 11924034 G A LPIN1 Silent p.L497L 0.41 TCGA-2Z-A9J3-01 2 152980339 152980339 A C STAM2 Silent p.S430S 0.42 TCGA-2Z-A9J3-01 2 158978032 158978032 A G UPP2 Missense_Mutation p.D246G 0.19 deleterious(0) probably_damaging(0.992) TCGA-2Z-A9J3-01 2 160743016 160743016 G C LY75-CD302 Missense_Mutation p.F276L 0.50 tolerated(0.21) probably_damaging(0.916) TCGA-2Z-A9J3-01 2 167142945 167142945 C T SCN9A Silent p.S501S 0.22 TCGA-2Z-A9J3-01 2 178097363 178097363 T C NFE2L2 Intron 0.45 TCGA-2Z-A9J3-01 2 179444981 179444981 A T TTN Intron 0.47 TCGA-2Z-A9J3-01 2 202508109 202508109 C T TMEM237 Silent p.S5S 0.48 TCGA-2Z-A9J3-01 2 20482960 20482960 T C PUM2 Missense_Mutation p.S490G 0.42 tolerated_low_confidence(1) benign(0.001) TCGA-2Z-A9J3-01 2 205550903 205550903 G - PARD3B Splice_Site p.X41_splice 0.19 TCGA-2Z-A9J3-01 2 226378138 226378138 T C NYAP2 Silent p.H91H 0.44 TCGA-2Z-A9J3-01 2 233633084 233633084 T C KCNJ13 Silent p.A300A 0.44 TCGA-2Z-A9J3-01 2 277409 277409 T C ACP1 3'UTR 0.42 TCGA-2Z-A9J3-01 2 51255154 51255154 G A NRXN1 Silent p.G86G 0.36 TCGA-2Z-A9J3-01 2 63380691 63380691 C G WDPCP Missense_Mutation p.R699S 0.30 tolerated(0.48) benign(0.004) TCGA-2Z-A9J3-01 2 71740432 71740437 TACTCT - DYSF In_Frame_Del p.Y175_S176del 0.28 TCGA-2Z-A9J3-01 2 85829239 85829239 A G TMEM150A 5'UTR 0.36 TCGA-2Z-A9J3-01 2 98275931 98275931 C T ACTR1B Missense_Mutation p.G67R 0.35 deleterious(0) probably_damaging(1) TCGA-2Z-A9J3-01 3 129156116 129156116 A C MBD4 Missense_Mutation p.L124R 0.71 deleterious(0) probably_damaging(0.995) TCGA-2Z-A9J3-01 3 142141761 142141764 TACC - XRN1 Frame_Shift_Del p.C239Lfs*14 0.15 TCGA-2Z-A9J3-01 3 160803876 160803876 G T B3GALNT1 Missense_Mutation p.H223N 0.63 deleterious(0) benign(0.033) TCGA-2Z-A9J3-01 3 183957755 183957755 G A VWA5B2 Missense_Mutation p.A891T 0.24 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9J3-01 3 39175775 39175776 - CCAT TTC21A Frame_Shift_Ins p.L949Hfs*6 0.42 TCGA-2Z-A9J3-01 3 44943387 44943387 G A TGM4 Missense_Mutation p.G312D 0.37 deleterious(0) probably_damaging(0.936) TCGA-2Z-A9J3-01 3 88042093 88042093 A G HTR1F 3'UTR 0.44 TCGA-2Z-A9J3-01 3 96706660 96706660 G T EPHA6 Missense_Mutation p.D313Y 0.43 deleterious(0) probably_damaging(0.957) TCGA-2Z-A9J3-01 4 13600946 13600946 C G BOD1L1 Missense_Mutation p.L2526F 0.06 possibly_damaging(0.51) TCGA-2Z-A9J3-01 4 148800473 148800473 G C ARHGAP10 Missense_Mutation p.R308T 0.32 deleterious(0.03) probably_damaging(0.911) TCGA-2Z-A9J3-01 4 159629584 159629584 G T ETFDH Missense_Mutation p.V587L 0.42 tolerated(0.22) benign(0.307) TCGA-2Z-A9J3-01 4 20493404 20493404 C A SLIT2 Missense_Mutation p.P266T 0.47 tolerated(0.22) benign(0.05) TCGA-2Z-A9J3-01 4 41015837 41015837 T A APBB2 Missense_Mutation p.I200F 0.38 tolerated(0.08) benign(0.03) TCGA-2Z-A9J3-01 4 4459185 4459185 G A STX18 Missense_Mutation p.T132I 0.40 tolerated(0.14) benign(0.128) TCGA-2Z-A9J3-01 4 5755635 5755635 C T EVC Missense_Mutation p.T480I 0.55 tolerated(0.53) benign(0.054) TCGA-2Z-A9J3-01 4 71639251 71639251 G T RUFY3 Missense_Mutation p.M240I 0.39 deleterious(0.03) benign(0.2) TCGA-2Z-A9J3-01 4 72222802 72222802 C T SLC4A4 Missense_Mutation p.R210W 0.31 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9J3-01 5 140230427 140230427 A G PCDHA9 Missense_Mutation p.T783A 0.82 tolerated_low_confidence(1) benign(0) TCGA-2Z-A9J3-01 5 140865167 140865167 G A PCDHGC4 Missense_Mutation p.G143R 0.38 deleterious(0.02) possibly_damaging(0.837) TCGA-2Z-A9J3-01 5 154296628 154296628 T C GEMIN5 Silent p.E595E 0.40 TCGA-2Z-A9J3-01 5 167944991 167944992 - TA RARS Frame_Shift_Ins p.E603Mfs*27 0.41 TCGA-2Z-A9J3-01 5 170235705 170235705 T G GABRP Missense_Mutation p.W261G 0.47 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9J3-01 5 176827428 176827428 C T PFN3 Silent p.V50V 0.31 TCGA-2Z-A9J3-01 6 10529857 10529857 A C GCNT2 Missense_Mutation p.N238T 0.34 tolerated(0.41) benign(0.007) TCGA-2Z-A9J3-01 6 143094459 143094460 CT A HIVEP2 Frame_Shift_Del p.E472Dfs*7 0.23 TCGA-2Z-A9J3-01 6 155569245 155569245 A G TIAM2 Missense_Mutation p.Y1255C 0.42 deleterious(0) probably_damaging(1) TCGA-2Z-A9J3-01 6 163986794 163986794 T A QKI Intron 0.56 TCGA-2Z-A9J3-01 6 29080095 29080095 T G OR2J3 Missense_Mutation p.F143C 0.39 deleterious(0.01) possibly_damaging(0.754) TCGA-2Z-A9J3-01 6 30680834 30680834 A C MDC1 Silent p.P295P 0.43 TCGA-2Z-A9J3-01 6 43418926 43418926 C - DLK2 Frame_Shift_Del p.G168Vfs*6 0.29 TCGA-2Z-A9J3-01 6 7542208 7542208 C T DSP Silent p.A20A 0.48 TCGA-2Z-A9J3-01 6 7584627 7584627 A TT DSP Frame_Shift_Ins p.I2378Ffs*2 0.37 TCGA-2Z-A9J3-01 6 88174058 88174058 G T C6ORF165 3'UTR 0.50 TCGA-2Z-A9J3-01 7 2951811 2951811 C T CARD11 Missense_Mutation p.A1047T 0.14 tolerated(0.2) benign(0.126) TCGA-2Z-A9J3-01 7 56155338 56155338 A G PHKG1 Missense_Mutation p.L72P 0.76 tolerated(0.17) possibly_damaging(0.5) TCGA-2Z-A9J3-01 7 72856678 72856678 G C BAZ1B Missense_Mutation p.Q1434E 0.75 tolerated(0.16) benign(0.005) TCGA-2Z-A9J3-01 7 73752959 73752959 G A CLIP2 Silent p.T101T 0.17 TCGA-2Z-A9J3-01 7 91624968 91624968 G A AKAP9 Missense_Mutation p.D262N 0.22 probably_damaging(0.992) TCGA-2Z-A9J3-01 7 92147296 92147296 T C PEX1 Missense_Mutation p.Q178R 0.77 tolerated(0.3) benign(0.003) TCGA-2Z-A9J3-01 8 146033121 146033121 T C ZNF517 Missense_Mutation p.S274P 0.56 deleterious(0) benign(0.307) TCGA-2Z-A9J3-01 8 66617006 66617006 T C MTFR1 Missense_Mutation p.L120S 0.33 tolerated(0.06) benign(0.034) TCGA-2Z-A9J3-01 8 89068476 89068476 G A MMP16 Missense_Mutation p.T418I 0.58 tolerated(0.3) benign(0.018) TCGA-2Z-A9J3-01 8 89068479 89068479 G T MMP16 Missense_Mutation p.T417K 0.58 deleterious(0.02) possibly_damaging(0.876) TCGA-2Z-A9J3-01 9 104237991 104237991 A G TMEM246 3'UTR 0.27 TCGA-2Z-A9J3-01 9 112145801 112145801 G T PTPN3 Missense_Mutation p.P762T 0.40 tolerated(0.45) probably_damaging(0.997) TCGA-2Z-A9J3-01 9 131731688 131731688 T C NUP188 Silent p.S269S 0.40 TCGA-2Z-A9J3-01 9 134073449 134073453 CAGCC - NUP214 Frame_Shift_Del p.Q1525Sfs*9 0.47 TCGA-2Z-A9J3-01 9 32466289 32466289 T - DDX58 Frame_Shift_Del p.K779Rfs*45 0.27 TCGA-2Z-A9J3-01 9 94173072 94173072 T G NFIL3 5'UTR 0.48 TCGA-2Z-A9J3-01 X 13779314 13779314 C A OFD1 Missense_Mutation p.P791T 0.90 tolerated(0.63) benign(0.026) TCGA-2Z-A9J5-01 10 121663721 121663721 T A SEC23IP Missense_Mutation p.W345R 0.23 deleterious(0) probably_damaging(0.995) TCGA-2Z-A9J5-01 10 126395323 126395323 A G FAM53B 5'UTR 0.16 TCGA-2Z-A9J5-01 10 32760011 32760011 T A CCDC7 Missense_Mutation p.L177H 0.29 tolerated(0.46) possibly_damaging(0.794) TCGA-2Z-A9J5-01 10 37508184 37508184 T C ANKRD30A Silent p.L1126L 0.31 TCGA-2Z-A9J5-01 10 62670721 62670721 C T RHOBTB1 Missense_Mutation p.D74N 0.24 deleterious(0) probably_damaging(1) TCGA-2Z-A9J5-01 10 64968945 64968945 A T JMJD1C Missense_Mutation p.D915E 0.31 tolerated(0.17) benign(0.047) TCGA-2Z-A9J5-01 10 7841871 7841871 A T ATP5C1 Nonsense_Mutation p.K189* 0.32 TCGA-2Z-A9J5-01 10 99498260 99498260 G A ZFYVE27 Missense_Mutation p.S9N 0.22 tolerated_low_confidence(0.25) possibly_damaging(0.76) TCGA-2Z-A9J5-01 11 110451689 110451689 T C ARHGAP20 Missense_Mutation p.N661D 0.18 tolerated(0.3) benign(0.001) TCGA-2Z-A9J5-01 11 26663544 26663544 T C ANO3 Missense_Mutation p.L748P 0.21 tolerated(0.32) possibly_damaging(0.551) TCGA-2Z-A9J5-01 11 35457562 35457562 T C PAMR1 Missense_Mutation p.T425A 0.28 deleterious(0.03) benign(0.028) TCGA-2Z-A9J5-01 11 62394377 62394377 C T GANAB Silent p.K806K 0.28 TCGA-2Z-A9J5-01 11 63679830 63679830 C T RCOR2 Missense_Mutation p.E402K 0.06 tolerated(0.19) unknown(0) TCGA-2Z-A9J5-01 11 64037623 64037623 T G BAD 3'UTR 0.31 TCGA-2Z-A9J5-01 11 64815657 64815657 C - NAALADL1 Frame_Shift_Del p.V439Wfs*43 0.21 TCGA-2Z-A9J5-01 11 65628851 65628851 A T MUS81 Missense_Mutation p.E99V 0.35 tolerated(0.15) benign(0.002) TCGA-2Z-A9J5-01 11 82643420 82643420 C T C11orf82 Missense_Mutation p.P347L 0.25 tolerated(0.29) benign(0.012) TCGA-2Z-A9J5-01 12 109858829 109858829 A T MYO1H Missense_Mutation p.K531N 0.05 deleterious(0) benign(0.283) TCGA-2Z-A9J5-01 12 674944 674944 C A NINJ2 Intron 0.56 TCGA-2Z-A9J5-01 12 69962872 69962872 T G FRS2 Missense_Mutation p.F21C 0.47 deleterious(0) probably_damaging(1) TCGA-2Z-A9J5-01 12 76425466 76425466 C G PHLDA1 Missense_Mutation p.C19S 0.04 tolerated_low_confidence(0.53) benign(0.074) TCGA-2Z-A9J5-01 13 45008845 45008845 A G TSC22D1 Missense_Mutation p.S1047P 0.42 deleterious(0.02) unknown(0) TCGA-2Z-A9J5-01 13 99947502 99947502 T G GPR183 Missense_Mutation p.N300H 0.30 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9J5-01 14 103338254 103338258 CTCTT - TRAF3 Frame_Shift_Del p.S83Kfs*13 0.15 TCGA-2Z-A9J5-01 14 64593109 64593109 T A SYNE2 Missense_Mutation p.L4540H 0.29 probably_damaging(0.98) TCGA-2Z-A9J5-01 14 75276225 75276225 T G YLPM1 Missense_Mutation p.L1555R 0.20 benign(0.005) TCGA-2Z-A9J5-01 14 75276226 75276226 A G YLPM1 Silent p.L1555L 0.21 TCGA-2Z-A9J5-01 14 76662242 76662242 A - GPATCH2L Frame_Shift_Del p.P406Hfs*49 0.13 TCGA-2Z-A9J5-01 15 28457603 28457603 G A HERC2 Nonsense_Mutation p.Q2305* 0.29 TCGA-2Z-A9J5-01 15 51028376 51028376 A T SPPL2A Missense_Mutation p.M285K 0.23 tolerated(0.08) benign(0.004) TCGA-2Z-A9J5-01 15 51973828 51973828 C T SCG3 5'UTR 0.19 TCGA-2Z-A9J5-01 15 52901851 52901851 T C FAM214A Silent p.K420K 0.24 TCGA-2Z-A9J5-01 15 89870191 89870191 A G POLG Silent p.L513L 0.33 TCGA-2Z-A9J5-01 16 11348785 11348785 G A SOCS1 Missense_Mutation p.A184V 0.25 tolerated(0.22) possibly_damaging(0.474) TCGA-2Z-A9J5-01 16 12371799 12371799 T C SNX29 Missense_Mutation p.L563P 0.23 tolerated(0.05) benign(0.005) TCGA-2Z-A9J5-01 16 4311843 4311843 C G TFAP4 Missense_Mutation p.E154D 0.57 tolerated(0.1) benign(0.07) TCGA-2Z-A9J5-01 16 56510135 56510135 G T OGFOD1 3'UTR 0.49 TCGA-2Z-A9J5-01 16 68156669 68156669 C - NFATC3 Frame_Shift_Del p.P295Lfs*11 0.27 TCGA-2Z-A9J5-01 16 682600 682600 A - WFIKKN1 Frame_Shift_Del p.K64Sfs*154 0.17 TCGA-2Z-A9J5-01 17 18088203 18088203 G C ALKBH5 Missense_Mutation p.V216L 0.26 deleterious(0.04) possibly_damaging(0.877) TCGA-2Z-A9J5-01 17 19459000 19459000 G T SLC47A1 Nonsense_Mutation p.G246* 0.20 TCGA-2Z-A9J5-01 17 27049734 27049734 C T RPL23A Intron 0.04 TCGA-2Z-A9J5-01 17 27438845 27438845 G - MYO18A Frame_Shift_Del p.L879Cfs*60 0.31 TCGA-2Z-A9J5-01 17 39116681 39116681 G A KRT39 Silent p.L357L 0.40 TCGA-2Z-A9J5-01 17 39637371 39637372 - T KRT35 5'UTR 0.16 TCGA-2Z-A9J5-01 17 40870014 40870014 T C EZH1 Missense_Mutation p.T335A 0.39 tolerated(0.76) benign(0) TCGA-2Z-A9J5-01 17 47075185 47075185 G A IGF2BP1 Silent p.K26K 0.22 TCGA-2Z-A9J5-01 17 4802092 4802092 A G CHRNE Missense_Mutation p.F474S 0.08 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9J5-01 17 4838028 4838028 C T GP1BA 3'UTR 0.45 TCGA-2Z-A9J5-01 18 12340242 12340242 A C AFG3L2 Silent p.A646A 0.21 TCGA-2Z-A9J5-01 18 21166333 21166333 G A NPC1 5'UTR 0.33 TCGA-2Z-A9J5-01 18 61570608 61570608 A T SERPINB2 3'UTR 0.38 TCGA-2Z-A9J5-01 19 1434904 1434904 G C DAZAP1 Missense_Mutation p.R406P 0.32 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-2Z-A9J5-01 19 15292387 15292387 C T NOTCH3 Missense_Mutation p.S931N 0.26 deleterious(0.02) possibly_damaging(0.768) TCGA-2Z-A9J5-01 19 18004704 18004704 G T SLC5A5 3'UTR 0.40 TCGA-2Z-A9J5-01 19 18286479 18286479 T C IFI30 Missense_Mutation p.F152S 0.33 tolerated(0.31) benign(0.048) TCGA-2Z-A9J5-01 19 35454581 35454581 A T ZNF792 5'UTR 0.28 TCGA-2Z-A9J5-01 19 44611401 44611401 A G ZNF224 Missense_Mutation p.H363R 0.07 tolerated(0.19) benign(0.004) TCGA-2Z-A9J5-01 19 49938140 49938140 C G SLC17A7 Splice_Site p.X145_splice 0.24 TCGA-2Z-A9J5-01 19 51920173 51920173 G A SIGLEC10 Silent p.P151P 0.21 TCGA-2Z-A9J5-01 19 52468148 52468148 C T ZNF350 Missense_Mutation p.V520M 0.28 tolerated(0.09) possibly_damaging(0.718) TCGA-2Z-A9J5-01 19 56153876 56153876 T A ZNF580 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) unknown(0) TCGA-2Z-A9J5-01 19 58049579 58049583 TCACT - ZNF549 Frame_Shift_Del p.L404* 0.16 TCGA-2Z-A9J5-01 19 58849868 58849868 C T ZSCAN22 Nonsense_Mutation p.Q218* 0.28 TCGA-2Z-A9J5-01 1 100340327 100340327 T A AGL Missense_Mutation p.V348E 0.18 deleterious(0) possibly_damaging(0.786) TCGA-2Z-A9J5-01 1 10364458 10364458 C A KIF1B Intron 0.29 TCGA-2Z-A9J5-01 1 12854459 12854459 T G PRAMEF1 Missense_Mutation p.L228R 0.26 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9J5-01 1 152128604 152128604 C T RPTN Missense_Mutation p.R324K 0.27 tolerated(0.14) benign(0.186) TCGA-2Z-A9J5-01 1 156564952 156564952 C T GPATCH4 3'Flank 0.47 TCGA-2Z-A9J5-01 1 182828229 182828229 G A DHX9 Missense_Mutation p.E373K 0.35 tolerated(0.36) benign(0.028) TCGA-2Z-A9J5-01 1 204379386 204379386 C A PPP1R15B Missense_Mutation p.C385F 0.17 tolerated(0.28) benign(0.016) TCGA-2Z-A9J5-01 1 207782641 207782641 C T CR1 Missense_Mutation p.S1968F 0.29 tolerated(0.73) probably_damaging(0.973) TCGA-2Z-A9J5-01 1 209907854 209907854 C T HSD11B1 Silent p.F289F 0.38 TCGA-2Z-A9J5-01 1 225695650 225695650 T C ENAH Intron 0.14 TCGA-2Z-A9J5-01 1 228506775 228506775 G A OBSCN Silent p.E5731E 0.33 TCGA-2Z-A9J5-01 1 237791158 237791159 - T RYR2 Frame_Shift_Ins p.V2074Cfs*3 0.22 TCGA-2Z-A9J5-01 1 242383316 242383316 C A PLD5 Missense_Mutation p.G237C 0.17 deleterious(0) possibly_damaging(0.653) TCGA-2Z-A9J5-01 1 25718532 25718532 T C RHCE Missense_Mutation p.E196G 0.34 tolerated(0.11) benign(0.363) TCGA-2Z-A9J5-01 1 27056349 27056349 C T ARID1A Nonsense_Mutation p.Q449* 0.27 TCGA-2Z-A9J5-01 20 1294040 1294040 G A SDCBP2 Missense_Mutation p.H110Y 0.19 tolerated(1) benign(0.049) TCGA-2Z-A9J5-01 20 31044026 31044026 C G C20orf112 Missense_Mutation p.K94N 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.79) TCGA-2Z-A9J5-01 20 6031523 6031523 G A LRRN4 Silent p.N254N 0.26 TCGA-2Z-A9J5-01 20 62595216 62595216 C T ZNF512B Missense_Mutation p.V511I 0.24 tolerated(0.25) benign(0.007) TCGA-2Z-A9J5-01 22 42906673 42906673 C A RRP7A 3'UTR 0.13 TCGA-2Z-A9J5-01 22 51009666 51009666 T C CPT1B Missense_Mutation p.E599G 0.32 deleterious(0) benign(0.213) TCGA-2Z-A9J5-01 2 114257882 114257882 G A FOXD4L1 Missense_Mutation p.S350N 0.39 tolerated(0.1) benign(0.107) TCGA-2Z-A9J5-01 2 132240242 132240242 G A TUBA3D Missense_Mutation p.D392N 0.38 tolerated_low_confidence(0.24) benign(0.028) TCGA-2Z-A9J5-01 2 202698681 202698681 A G CDK15 Silent p.K239K 0.16 TCGA-2Z-A9J5-01 2 32631577 32631577 C A BIRC6 Missense_Mutation p.L477M 0.44 possibly_damaging(0.621) TCGA-2Z-A9J5-01 2 32733202 32733202 C T BIRC6 Missense_Mutation p.R3286W 0.44 probably_damaging(0.982) TCGA-2Z-A9J5-01 2 62451703 62451704 GG - B3GNT2 3'UTR 0.30 TCGA-2Z-A9J5-01 2 85617285 85617285 C A ELMOD3 Silent p.V280V 0.17 TCGA-2Z-A9J5-01 3 122647427 122647427 G A SEMA5B Silent p.V245V 0.44 TCGA-2Z-A9J5-01 3 154898446 154898446 T A MME 3'UTR 0.20 TCGA-2Z-A9J5-01 3 170244552 170244552 G A SLC7A14 Silent p.L58L 0.38 TCGA-2Z-A9J5-01 3 38739055 38739055 C - SCN10A Frame_Shift_Del p.A1886Lfs*49 0.31 TCGA-2Z-A9J5-01 3 48464321 48464321 G A PLXNB1 Silent p.H381H 0.28 TCGA-2Z-A9J5-01 3 51350329 51350329 T - DOCK3 Frame_Shift_Del p.L1084Wfs*12 0.30 TCGA-2Z-A9J5-01 3 77617480 77617480 A T ROBO2 Silent p.A638A 0.18 TCGA-2Z-A9J5-01 3 87299049 87299049 A G CHMP2B Missense_Mutation p.M116V 0.21 tolerated(0.08) benign(0.001) TCGA-2Z-A9J5-01 3 89259542 89259542 C - EPHA3 Frame_Shift_Del p.S229Ffs*57 0.28 TCGA-2Z-A9J5-01 4 15482437 15482437 G A CC2D2A Missense_Mutation p.R78Q 0.27 deleterious_low_confidence(0.04) benign(0.027) TCGA-2Z-A9J5-01 4 183064221 183064221 A T AC108142.1 RNA 0.30 TCGA-2Z-A9J5-01 5 112174167 112174167 C A APC Missense_Mutation p.S959Y 0.29 benign(0.392) TCGA-2Z-A9J5-01 5 134907487 134907487 T A CXCL14 3'UTR 0.21 TCGA-2Z-A9J5-01 5 140306623 140306623 C A PCDHAC1 Missense_Mutation p.A49D 0.38 tolerated(0.21) benign(0.014) TCGA-2Z-A9J5-01 5 14687708 14687708 G A FAM105B Missense_Mutation p.D183N 0.30 tolerated(0.23) benign(0.011) TCGA-2Z-A9J5-01 5 37184927 37184927 A G C5orf42 Missense_Mutation p.S1482P 0.21 tolerated(0.22) benign(0.014) TCGA-2Z-A9J5-01 6 109480588 109480588 A T CEP57L1 Silent p.S313S 0.23 TCGA-2Z-A9J5-01 6 117609591 117609591 T - ROS1 3'UTR 0.19 TCGA-2Z-A9J5-01 6 132030533 132030533 A - CTAGE9 Frame_Shift_Del p.L542Cfs*43 0.19 TCGA-2Z-A9J5-01 6 69646517 69646517 C G BAI3 Missense_Mutation p.H325Q 0.20 tolerated(0.99) possibly_damaging(0.852) TCGA-2Z-A9J5-01 7 103008257 103008257 G T PSMC2 Splice_Site p.X382_splice 0.42 TCGA-2Z-A9J5-01 7 128632137 128632137 G C TNPO3 Missense_Mutation p.S425C 0.33 tolerated(0.18) benign(0.353) TCGA-2Z-A9J5-01 7 131815331 131815331 G T PLXNA4 Silent p.I1864I 0.29 TCGA-2Z-A9J5-01 7 135078775 135078775 T C CNOT4 Missense_Mutation p.I508V 0.48 tolerated_low_confidence(0.1) benign(0.053) TCGA-2Z-A9J5-01 7 150915213 150915213 G C ABCF2 Missense_Mutation p.P431R 0.49 deleterious(0) probably_damaging(1) TCGA-2Z-A9J5-01 7 2976750 2976750 A T CARD11 Missense_Mutation p.M421K 0.55 deleterious(0) benign(0.001) TCGA-2Z-A9J5-01 7 73790571 73790571 A - CLIP2 Frame_Shift_Del p.K614Nfs*22 0.26 TCGA-2Z-A9J5-01 7 87785232 87785232 C T ADAM22 Silent p.T606T 0.23 TCGA-2Z-A9J5-01 8 101273971 101273971 A G RNF19A Missense_Mutation p.V494A 0.17 tolerated(0.19) benign(0.127) TCGA-2Z-A9J5-01 8 139809070 139809070 C T COL22A1 Missense_Mutation p.G530S 0.25 unknown(0) TCGA-2Z-A9J5-01 8 139809071 139809071 C A COL22A1 Missense_Mutation p.K529N 0.25 unknown(0) TCGA-2Z-A9J5-01 8 33361326 33361326 G C TTI2 Missense_Mutation p.P352R 0.35 deleterious(0.04) probably_damaging(0.948) TCGA-2Z-A9J5-01 8 93029609 93029609 G C RUNX1T1 Intron 0.27 TCGA-2Z-A9J5-01 9 100124603 100124603 C T CCDC180 Missense_Mutation p.P1305L 0.53 tolerated(0.32) benign(0) TCGA-2Z-A9J5-01 9 115232917 115232917 T C HSDL2 3'UTR 0.63 TCGA-2Z-A9J5-01 9 132565494 132565494 G T TOR1B Translation_Start_Site p.M1? 0.59 deleterious_low_confidence(0.03) unknown(0) TCGA-2Z-A9J5-01 9 135204944 135204944 C T SETX Missense_Mutation p.D681N 0.51 tolerated_low_confidence(0.07) benign(0.01) TCGA-2Z-A9J5-01 9 139700623 139700623 G A CCDC183 Missense_Mutation p.A348T 0.50 deleterious(0.03) probably_damaging(0.939) TCGA-2Z-A9J5-01 9 79520890 79520890 G - PRUNE2 5'UTR 0.34 TCGA-2Z-A9J5-01 X 111019496 111019496 T A TRPC5 3'UTR 0.56 TCGA-2Z-A9J5-01 X 53565805 53565805 G T HUWE1 Missense_Mutation p.R3957S 0.56 unknown(0) TCGA-2Z-A9J6-01 10 17164868 17164868 T C CUBN Silent p.E173E 0.39 TCGA-2Z-A9J6-01 11 28311807 28311807 G T METTL15 Missense_Mutation p.M154I 0.34 tolerated(0.26) benign(0) TCGA-2Z-A9J6-01 11 63997510 63997510 C T DNAJC4 5'Flank 0.31 TCGA-2Z-A9J6-01 11 64594522 64594522 C T CDC42BPG Silent p.P1463P 0.44 TCGA-2Z-A9J6-01 11 64882278 64882278 T A TM7SF2 Missense_Mutation p.Y233N 0.35 deleterious(0) probably_damaging(0.997) TCGA-2Z-A9J6-01 11 71724196 71724196 G T NUMA1 Missense_Mutation p.N1451K 0.05 probably_damaging(0.999) TCGA-2Z-A9J6-01 11 76255546 76255546 G A C11orf30 Missense_Mutation p.D985N 0.29 deleterious_low_confidence(0.03) benign(0.038) TCGA-2Z-A9J6-01 12 120427989 120427991 AGG - CCDC64 In_Frame_Del p.E107del 0.25 TCGA-2Z-A9J6-01 12 48179627 48179627 C T HDAC7 Missense_Mutation p.G872S 0.30 deleterious(0.01) probably_damaging(1) TCGA-2Z-A9J6-01 14 21560330 21560330 G A ZNF219 Missense_Mutation p.P376S 0.41 tolerated(1) benign(0.09) TCGA-2Z-A9J6-01 15 25616263 25616263 A T UBE3A Missense_Mutation p.F356Y 0.38 tolerated(0.72) benign(0.002) TCGA-2Z-A9J6-01 15 35189830 35189830 C T AQR Missense_Mutation p.A774T 0.39 tolerated(0.47) benign(0.004) TCGA-2Z-A9J6-01 15 41797613 41797613 T C LTK Missense_Mutation p.S605G 0.34 deleterious_low_confidence(0.04) possibly_damaging(0.492) TCGA-2Z-A9J6-01 15 89421303 89421303 G A HAPLN3 Silent p.H327H 0.06 TCGA-2Z-A9J6-01 16 10032281 10032281 C A GRIN2A Missense_Mutation p.R181M 0.27 deleterious(0) probably_damaging(0.917) TCGA-2Z-A9J6-01 16 16244436 16244436 G C ABCC6 Missense_Mutation p.R1468G 0.49 deleterious(0) probably_damaging(0.995) TCGA-2Z-A9J6-01 16 3779274 3779274 G C CREBBP Missense_Mutation p.A1925G 0.19 unknown(0) TCGA-2Z-A9J6-01 16 72015971 72015971 C T PKD1L3 RNA 0.53 TCGA-2Z-A9J6-01 17 10352186 10352187 - A MYH4 Frame_Shift_Ins p.D1454* 0.19 TCGA-2Z-A9J6-01 17 17698698 17698698 G T RAI1 Missense_Mutation p.Q812H 0.27 deleterious(0.01) benign(0.048) TCGA-2Z-A9J6-01 17 17698712 17698712 G T RAI1 Missense_Mutation p.G817V 0.26 deleterious_low_confidence(0.02) benign(0.1) TCGA-2Z-A9J6-01 17 18922878 18922878 G A SLC5A10 Missense_Mutation p.V478I 0.26 tolerated(1) benign(0.002) TCGA-2Z-A9J6-01 17 26512260 26512260 A T NLK Missense_Mutation p.H402L 0.41 deleterious(0.01) probably_damaging(0.977) TCGA-2Z-A9J6-01 17 49157055 49157055 T A SPAG9 Missense_Mutation p.E105V 0.23 deleterious(0.01) benign(0.174) TCGA-2Z-A9J6-01 17 79031740 79031740 A G BAIAP2 Missense_Mutation p.S64G 0.45 deleterious(0) possibly_damaging(0.859) TCGA-2Z-A9J6-01 18 21418824 21418824 G T LAMA3 Missense_Mutation p.G1058V 0.30 possibly_damaging(0.732) TCGA-2Z-A9J6-01 18 45395677 45395677 A C SMAD2 Missense_Mutation p.F153V 0.07 deleterious(0) probably_damaging(0.911) TCGA-2Z-A9J6-01 19 10823829 10823829 G A QTRT1 Silent p.V365V 0.31 TCGA-2Z-A9J6-01 19 44012185 44012185 T A ETHE1 Missense_Mutation p.E208V 0.43 deleterious(0) probably_damaging(0.995) TCGA-2Z-A9J6-01 19 44980632 44980632 T C ZNF180 Missense_Mutation p.Y689C 0.32 deleterious(0) possibly_damaging(0.788) TCGA-2Z-A9J6-01 19 45504904 45504904 G T RELB Missense_Mutation p.V23F 0.12 deleterious_low_confidence(0) benign(0.32) TCGA-2Z-A9J6-01 19 9226308 9226308 G A OR7G1 Silent p.L44L 0.31 TCGA-2Z-A9J6-01 1 150235713 150235713 G C CA14 Missense_Mutation p.G246R 0.42 tolerated(0.47) benign(0.007) TCGA-2Z-A9J6-01 1 150437078 150437078 C A RPRD2 Missense_Mutation p.P496H 0.41 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-2Z-A9J6-01 1 183511366 183511366 A T SMG7 Missense_Mutation p.K524I 0.36 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9J6-01 1 200342235 200342235 T C LINC00862 RNA 0.07 TCGA-2Z-A9J6-01 1 202724423 202724423 C T KDM5B Missense_Mutation p.S505N 0.34 deleterious(0) probably_damaging(0.936) TCGA-2Z-A9J6-01 1 22176680 22176680 C T HSPG2 Missense_Mutation p.G2434R 0.12 benign(0.076) TCGA-2Z-A9J6-01 1 28948461 28948461 C T TAF12 Missense_Mutation p.G45R 0.04 tolerated(0.14) benign(0.005) TCGA-2Z-A9J6-01 1 74671342 74671342 A G FPGT Silent p.S537S 0.34 TCGA-2Z-A9J6-01 20 310068 310068 A G SOX12 3'UTR 0.41 TCGA-2Z-A9J6-01 20 45239165 45239165 A T SLC13A3 Missense_Mutation p.I154N 0.35 deleterious(0) probably_damaging(0.995) TCGA-2Z-A9J6-01 20 5294901 5294901 C T PROKR2 Missense_Mutation p.E39K 0.30 tolerated(0.06) benign(0.06) TCGA-2Z-A9J6-01 21 38494164 38494164 C G TTC3 Missense_Mutation p.D316E 0.13 tolerated(1) benign(0.001) TCGA-2Z-A9J6-01 22 26164198 26164198 G C MYO18B Silent p.L105L 0.05 TCGA-2Z-A9J6-01 2 159477605 159477605 A G PKP4 Silent p.P128P 0.33 TCGA-2Z-A9J6-01 2 175436343 175436344 - T WIPF1 Intron 0.23 TCGA-2Z-A9J6-01 2 198367837 198367837 A G HSPE1 Silent p.V81V 0.43 TCGA-2Z-A9J6-01 2 241922385 241922385 A T AC104809.2 RNA 0.38 TCGA-2Z-A9J6-01 2 27324436 27324436 G T CGREF1 Silent p.P221P 0.30 TCGA-2Z-A9J6-01 2 74043789 74043789 A T C2orf78 Silent p.S813S 0.41 TCGA-2Z-A9J6-01 2 85553951 85553951 T - TGOLN2 Frame_Shift_Del p.T302Lfs*89 0.21 TCGA-2Z-A9J6-01 3 112648333 112648333 T G CD200R1 Missense_Mutation p.K75T 0.28 tolerated(0.61) benign(0.032) TCGA-2Z-A9J6-01 3 119256217 119256217 T A CD80 Missense_Mutation p.N156I 0.04 deleterious(0) benign(0.439) TCGA-2Z-A9J6-01 3 151155418 151155418 A T IGSF10 Missense_Mutation p.F2311I 0.16 deleterious(0) probably_damaging(0.984) TCGA-2Z-A9J6-01 3 169896600 169896600 C A PHC3 Missense_Mutation p.Q47H 0.20 deleterious(0.02) probably_damaging(0.989) TCGA-2Z-A9J6-01 3 50425008 50425008 G A CACNA2D2 Silent p.D167D 0.43 TCGA-2Z-A9J6-01 4 139981506 139981506 C T ELF2 Missense_Mutation p.A365T 0.39 tolerated(0.79) benign(0.015) TCGA-2Z-A9J6-01 4 177046485 177046485 C T WDR17 Missense_Mutation p.P281S 0.39 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9J6-01 5 1221280 1221280 T C SLC6A19 Missense_Mutation p.I518T 0.45 deleterious(0) possibly_damaging(0.673) TCGA-2Z-A9J6-01 5 1222187 1222187 G A SLC6A19 3'UTR 0.43 TCGA-2Z-A9J6-01 5 33997552 33997552 T C AMACR Intron 0.40 TCGA-2Z-A9J6-01 5 64755996 64755996 C T ADAMTS6 Splice_Site p.X211_splice 0.07 TCGA-2Z-A9J6-01 6 118229023 118229023 G T SLC35F1 Missense_Mutation p.R45L 0.22 tolerated(0.38) benign(0.001) TCGA-2Z-A9J6-01 7 116770588 116770588 A - ST7 Frame_Shift_Del p.M165* 0.22 TCGA-2Z-A9J6-01 7 142832288 142832288 C T PIP Missense_Mutation p.R33W 0.62 tolerated(0.1) possibly_damaging(0.842) TCGA-2Z-A9J6-01 7 142961758 142961758 T A GSTK1 Missense_Mutation p.M91K 0.47 deleterious(0) benign(0.093) TCGA-2Z-A9J6-01 7 1784273 1784273 C A ELFN1 Missense_Mutation p.A14E 0.22 deleterious(0.05) possibly_damaging(0.894) TCGA-2Z-A9J6-01 8 61707584 61707584 A G CHD7 Silent p.K712K 0.06 TCGA-2Z-A9J6-01 8 67576667 67576667 C A VCPIP1 Missense_Mutation p.G843C 0.32 deleterious(0) probably_damaging(1) TCGA-2Z-A9J6-01 9 132625464 132625464 G T USP20 Splice_Site p.X166_splice 0.29 TCGA-2Z-A9J6-01 9 19371699 19371699 A G DENND4C Intron 0.28 TCGA-2Z-A9J6-01 X 1407443 1407443 G A CSF2RA Missense_Mutation p.R84H 0.54 tolerated(0.11) benign(0.002) TCGA-2Z-A9J6-01 X 54777684 54777684 C T ITIH6 Missense_Mutation p.R1161H 0.69 tolerated(0.55) possibly_damaging(0.828) TCGA-2Z-A9J7-01 10 111884029 111884029 C T ADD3 Silent p.I466I 0.50 TCGA-2Z-A9J7-01 10 16967343 16967343 T C CUBN Silent p.S2181S 0.47 TCGA-2Z-A9J7-01 10 50822175 50822175 C T CHAT 5'UTR 0.09 TCGA-2Z-A9J7-01 11 18254055 18254055 A G SAA4 Silent p.Y39Y 0.44 TCGA-2Z-A9J7-01 11 68822257 68822257 A G TPCN2 Silent p.V81V 0.45 TCGA-2Z-A9J7-01 12 53074122 53074122 T A KRT1 Missense_Mutation p.Q4L 0.08 deleterious(0) unknown(0) TCGA-2Z-A9J7-01 12 77417866 77417866 C T E2F7 Missense_Mutation p.E889K 0.06 deleterious(0.01) possibly_damaging(0.791) TCGA-2Z-A9J7-01 13 32910939 32910939 A G BRCA2 Missense_Mutation p.E816G 0.47 tolerated(0.23) benign(0.331) TCGA-2Z-A9J7-01 13 77460411 77460411 G A KCTD12 5'UTR 0.15 TCGA-2Z-A9J7-01 13 77460414 77460414 A G KCTD12 5'UTR 0.12 TCGA-2Z-A9J7-01 14 74180649 74180649 G A PNMA1 5'UTR 0.52 TCGA-2Z-A9J7-01 15 44106734 44106734 C T MFAP1 Silent p.E194E 0.42 TCGA-2Z-A9J7-01 15 66856303 66856303 T A LCTL Missense_Mutation p.N106Y 0.50 deleterious(0.01) possibly_damaging(0.467) TCGA-2Z-A9J7-01 16 75327931 75327951 TTCAATGTACCTAGAAGATGA - CFDP1 Splice_Site p.X270_splice 0.28 TCGA-2Z-A9J7-01 16 83378492 83378492 A G CDH13 Missense_Mutation p.N268S 0.42 tolerated(0.18) benign(0.002) TCGA-2Z-A9J7-01 16 89167635 89167635 G T ACSF3 Silent p.P182P 0.51 TCGA-2Z-A9J7-01 17 46973049 46973049 A C ATP5G1 Missense_Mutation p.Y110S 0.29 deleterious(0.01) possibly_damaging(0.845) TCGA-2Z-A9J7-01 17 57742269 57742269 A G CLTC Missense_Mutation p.Q548R 0.27 tolerated(0.62) probably_damaging(0.998) TCGA-2Z-A9J7-01 17 70119703 70119703 G A SOX9 Silent p.P235P 0.28 TCGA-2Z-A9J7-01 17 72353826 72353826 A G BTBD17 Missense_Mutation p.I136T 0.05 tolerated(0.18) benign(0.038) TCGA-2Z-A9J7-01 17 76803450 76803450 G A USP36 Missense_Mutation p.S559L 0.29 tolerated(0.87) benign(0.003) TCGA-2Z-A9J7-01 18 44626640 44626640 T C KATNAL2 Missense_Mutation p.S392P 0.60 deleterious(0) probably_damaging(0.993) TCGA-2Z-A9J7-01 19 44988631 44988631 G C ZNF180 Missense_Mutation p.Q50E 0.38 tolerated(0.05) benign(0.142) TCGA-2Z-A9J7-01 1 100950141 100950141 C T CDC14A Intron 0.35 TCGA-2Z-A9J7-01 1 10338109 10338109 T A KIF1B Missense_Mutation p.L362Q 0.46 deleterious(0) probably_damaging(0.978) TCGA-2Z-A9J7-01 1 110198808 110198808 C T GSTM4 5'UTR 0.43 TCGA-2Z-A9J7-01 1 11140814 11140814 C G EXOSC10 Intron 0.44 TCGA-2Z-A9J7-01 1 148343748 148343748 T C NBPF20 Silent p.L113L 0.24 TCGA-2Z-A9J7-01 1 155239317 155239317 G A CLK2 Missense_Mutation p.R121W 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-2Z-A9J7-01 1 160209276 160209276 A C DCAF8 Intron 0.38 TCGA-2Z-A9J7-01 1 227268711 227268711 G C CDC42BPA Missense_Mutation p.T788S 0.47 tolerated(1) benign(0.001) TCGA-2Z-A9J7-01 1 229602498 229602498 G T NUP133 Silent p.S694S 0.06 TCGA-2Z-A9J7-01 1 237919618 237919618 T C RYR2 Missense_Mutation p.Y3726H 0.42 probably_damaging(0.968) TCGA-2Z-A9J7-01 1 33292095 33292095 C T S100PBP Missense_Mutation p.P132L 0.17 tolerated(0.15) benign(0.034) TCGA-2Z-A9J7-01 1 43825898 43825898 A G CDC20 Silent p.V197V 0.51 TCGA-2Z-A9J7-01 1 45266511 45266511 G - PLK3 Splice_Site p.X72_splice 0.32 TCGA-2Z-A9J7-01 1 71512615 71512615 C T PTGER3 Missense_Mutation p.G216S 0.34 tolerated(0.18) possibly_damaging(0.734) TCGA-2Z-A9J7-01 1 78432739 78432739 C A FUBP1 Nonsense_Mutation p.G113* 0.45 TCGA-2Z-A9J7-01 22 30163499 30163499 C T UQCR10 Nonsense_Mutation p.Q38* 0.46 TCGA-2Z-A9J7-01 2 3392180 3392180 C G TRAPPC12 Silent p.P262P 0.43 TCGA-2Z-A9J7-01 2 73519561 73519561 G C EGR4 Missense_Mutation p.S265W 0.47 deleterious(0) probably_damaging(0.984) TCGA-2Z-A9J7-01 3 51976543 51976543 A G PARP3 5'UTR 0.57 TCGA-2Z-A9J7-01 4 152622569 152622569 C A PET112 Missense_Mutation p.R370L 0.47 deleterious(0.01) possibly_damaging(0.82) TCGA-2Z-A9J7-01 5 140865299 140865299 G A PCDHGC4 Missense_Mutation p.D187N 0.58 tolerated(0.12) possibly_damaging(0.846) TCGA-2Z-A9J7-01 5 147028036 147028036 T A JAKMIP2 Missense_Mutation p.D280V 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-2Z-A9J7-01 5 148651501 148651501 C T AFAP1L1 5'UTR 0.31 TCGA-2Z-A9J7-01 5 16465654 16465654 G A ZNF622 Missense_Mutation p.P41S 0.44 deleterious(0.01) probably_damaging(0.961) TCGA-2Z-A9J7-01 5 41000851 41000852 - A MROH2B Frame_Shift_Ins p.A1427Cfs*2 0.37 TCGA-2Z-A9J7-01 5 54771139 54771139 G A PPAP2A Intron 0.43 TCGA-2Z-A9J7-01 5 79033639 79033639 A G CMYA5 Silent p.K3017K 0.47 TCGA-2Z-A9J7-01 6 42946507 42946507 C T PEX6 Missense_Mutation p.G128R 0.57 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2Z-A9J7-01 7 148484199 148484199 T G CUL1 Missense_Mutation p.I489S 0.36 deleterious(0) probably_damaging(0.993) TCGA-2Z-A9J7-01 7 20403321 20403321 A G ITGB8 Silent p.P63P 0.26 TCGA-2Z-A9J7-01 7 21750214 21750214 C T DNAH11 Nonsense_Mutation p.R2250* 0.06 TCGA-2Z-A9J7-01 7 23145688 23145688 G A KLHL7 Missense_Mutation p.E15K 0.26 tolerated_low_confidence(0.14) benign(0.305) TCGA-2Z-A9J7-01 7 77408774 77408774 T A RSBN1L 3'UTR 0.12 TCGA-2Z-A9J7-01 7 77408776 77408776 T A RSBN1L 3'UTR 0.22 TCGA-2Z-A9J7-01 7 86469144 86469144 G A GRM3 Missense_Mutation p.G772S 0.18 deleterious(0.02) possibly_damaging(0.718) TCGA-2Z-A9J7-01 8 145112996 145112996 G A OPLAH Silent p.A335A 0.47 TCGA-2Z-A9J7-01 8 98289275 98289275 C T TSPYL5 Silent p.L266L 0.47 TCGA-2Z-A9J7-01 9 140904505 140904505 G C CACNA1B Silent p.L712L 0.42 TCGA-2Z-A9J7-01 9 27548417 27548417 C T C9orf72 Silent p.Q421Q 0.60 TCGA-2Z-A9J7-01 9 8486309 8486309 C T PTPRD Missense_Mutation p.M836I 0.48 tolerated(0.19) possibly_damaging(0.844) TCGA-2Z-A9J7-01 X 105179166 105179166 C A NRK Nonsense_Mutation p.Y1169* 0.96 TCGA-2Z-A9J7-01 X 205414 205414 A C PLCXD1 Missense_Mutation p.M48L 0.93 deleterious(0.02) probably_damaging(0.934) TCGA-2Z-A9J8-01 11 117155921 117155921 G T RNF214 3'UTR 0.05 TCGA-2Z-A9J8-01 11 130785979 130785979 T C SNX19 5'UTR 0.80 TCGA-2Z-A9J8-01 11 60156941 60156941 G T MS4A7 Missense_Mutation p.V140L 0.41 tolerated(0.13) benign(0.389) TCGA-2Z-A9J8-01 11 65108472 65108472 C T DPF2 Missense_Mutation p.R77W 0.47 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9J8-01 12 124498442 124498442 C T ZNF664 3'UTR 0.39 TCGA-2Z-A9J8-01 12 14929836 14929836 C T H2AFJ 3'UTR 0.43 TCGA-2Z-A9J8-01 12 48143247 48143247 C T RAPGEF3 Missense_Mutation p.A323T 0.12 deleterious(0) probably_damaging(0.979) TCGA-2Z-A9J8-01 12 52282036 52282036 C A ANKRD33 Missense_Mutation p.F22L 0.47 tolerated_low_confidence(1) benign(0) TCGA-2Z-A9J8-01 12 7276626 7276626 C T RBP5 3'UTR 0.36 TCGA-2Z-A9J8-01 14 23502654 23502654 G C PSMB5 Missense_Mutation p.A143G 0.54 deleterious(0.02) possibly_damaging(0.474) TCGA-2Z-A9J8-01 14 96997935 96997935 C T PAPOLA Intron 0.06 TCGA-2Z-A9J8-01 16 3656681 3656681 T G SLX4 Missense_Mutation p.D185A 0.42 tolerated(0.13) benign(0.122) TCGA-2Z-A9J8-01 16 56700757 56700757 T A MT1G 3'UTR 0.32 TCGA-2Z-A9J8-01 16 703789 703789 C G WDR90 Missense_Mutation p.H475D 0.42 tolerated(0.47) benign(0.019) TCGA-2Z-A9J8-01 17 45901504 45901504 C G MRPL10 3'UTR 0.44 TCGA-2Z-A9J8-01 18 43252937 43252937 C T SLC14A2 Missense_Mutation p.L768F 0.30 deleterious(0.01) probably_damaging(0.921) TCGA-2Z-A9J8-01 18 74637348 74637348 C G ZNF236 Missense_Mutation p.R1287G 0.44 tolerated(0.1) benign(0.004) TCGA-2Z-A9J8-01 19 2223434 2223434 C T DOT1L Missense_Mutation p.P1182L 0.49 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-2Z-A9J8-01 19 38905689 38905689 G A RASGRP4 Silent p.C343C 0.46 TCGA-2Z-A9J8-01 1 16274992 16274992 G A ZBTB17 Intron 0.60 TCGA-2Z-A9J8-01 1 200818453 200818453 A - CAMSAP2 Frame_Shift_Del p.T853Lfs*20 0.28 TCGA-2Z-A9J8-01 1 244662360 244662360 G A C1orf101 Silent p.G136G 0.41 TCGA-2Z-A9J8-01 1 28920237 28920237 G T RAB42 5'UTR 0.73 TCGA-2Z-A9J8-01 1 52769546 52769547 - A ZFYVE9 Frame_Shift_Ins p.M1130Nfs*7 0.26 TCGA-2Z-A9J8-01 2 114356008 114356008 C T WASH2P RNA 0.09 TCGA-2Z-A9J8-01 2 212578365 212578365 C T ERBB4 Missense_Mutation p.V298M 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-2Z-A9J8-01 2 225378264 225378264 C A CUL3 Nonsense_Mutation p.E211* 0.43 TCGA-2Z-A9J8-01 2 225449664 225449664 A - CUL3 Frame_Shift_Del p.P22Rfs*2 0.23 TCGA-2Z-A9J8-01 2 44053595 44053595 G T ABCG5 Missense_Mutation p.L234I 0.04 tolerated(0.12) possibly_damaging(0.715) TCGA-2Z-A9J8-01 2 46002 46003 - T FAM110C Frame_Shift_Ins p.P130Afs*3 0.30 TCGA-2Z-A9J8-01 3 196666228 196666228 T C NCBP2 Missense_Mutation p.T52A 0.34 deleterious(0.02) benign(0.086) TCGA-2Z-A9J8-01 4 68424597 68424597 C A STAP1 Missense_Mutation p.L24I 0.33 deleterious(0) possibly_damaging(0.831) TCGA-2Z-A9J8-01 4 76841890 76841890 C G NAAA Splice_Site p.X301_splice 0.43 TCGA-2Z-A9J8-01 5 178043950 178043950 C G CLK4 Splice_Site p.X159_splice 0.31 TCGA-2Z-A9J8-01 5 36995727 36995743 GTATAGATCAATCAGTG - NIPBL Frame_Shift_Del p.S1042Ifs*7 0.35 TCGA-2Z-A9J8-01 6 29638602 29638602 A - MOG Intron 0.26 TCGA-2Z-A9J8-01 7 100802478 100802478 G T AP1S1 Splice_Site p.X143_splice 0.25 TCGA-2Z-A9J8-01 7 2696131 2696132 - TCGT TTYH3 Frame_Shift_Ins p.C407Rfs*15 0.37 TCGA-2Z-A9J8-01 8 133044287 133044287 A - OC90 Frame_Shift_Del p.F291Sfs*14 0.34 TCGA-2Z-A9J8-01 8 144803996 144803996 G T MAPK15 Silent p.L468L 0.59 TCGA-2Z-A9J8-01 9 139977198 139977198 C G UAP1L1 3'UTR 0.43 TCGA-2Z-A9J8-01 9 19049688 19049688 C A RRAGA Missense_Mutation p.L11M 0.39 deleterious(0) probably_damaging(1) TCGA-2Z-A9J8-01 X 101910027 101910027 G C GPRASP1 Missense_Mutation p.E396Q 0.86 deleterious(0.03) benign(0.391) TCGA-2Z-A9J8-01 X 96171470 96171470 A C DIAPH2 Missense_Mutation p.S256R 0.79 deleterious(0.02) unknown(0) TCGA-2Z-A9JD-01 10 119044910 119044910 T C PDZD8 Missense_Mutation p.Y445C 0.41 deleterious(0) probably_damaging(1) TCGA-2Z-A9JD-01 10 120919242 120919242 T A SFXN4 Missense_Mutation p.T120S 0.56 tolerated(0.06) benign(0.216) TCGA-2Z-A9JD-01 10 124793964 124793964 A C ACADSB Silent p.T45T 0.39 TCGA-2Z-A9JD-01 10 63851119 63851119 C T ARID5B Silent p.L633L 0.38 TCGA-2Z-A9JD-01 10 7842038 7842038 T C ATP5C1 Silent p.N207N 0.27 TCGA-2Z-A9JD-01 10 88441289 88441290 CC - LDB3 Frame_Shift_Del p.P140Hfs*3 0.23 TCGA-2Z-A9JD-01 11 103908802 103908802 A T DDI1 3'UTR 0.36 TCGA-2Z-A9JD-01 11 47261608 47261608 A G ACP2 3'UTR 0.45 TCGA-2Z-A9JD-01 11 63342507 63342507 G A PLA2G16 Silent p.V133V 0.40 TCGA-2Z-A9JD-01 11 63487846 63487846 A T RTN3 Missense_Mutation p.E624D 0.39 deleterious(0.04) benign(0.437) TCGA-2Z-A9JD-01 11 64811959 64811959 C T SAC3D1 Silent p.V279V 0.49 TCGA-2Z-A9JD-01 11 6624661 6624661 A T RRP8 Silent p.P24P 0.37 TCGA-2Z-A9JD-01 11 70179622 70179622 A C PPFIA1 Missense_Mutation p.E420A 0.40 deleterious(0.03) probably_damaging(0.969) TCGA-2Z-A9JD-01 11 7023949 7023949 T A ZNF214 Missense_Mutation p.M40L 0.38 tolerated(0.53) benign(0.003) TCGA-2Z-A9JD-01 12 107372223 107372223 A G MTERFD3 Silent p.D90D 0.38 TCGA-2Z-A9JD-01 12 113645940 113645940 A - IQCD Frame_Shift_Del p.L11Cfs*10 0.26 TCGA-2Z-A9JD-01 12 132505838 132505838 C - EP400 Frame_Shift_Del p.S1556Rfs*12 0.26 TCGA-2Z-A9JD-01 12 32134899 32134899 T A KIAA1551 Missense_Mutation p.F337Y 0.36 tolerated(0.17) possibly_damaging(0.792) TCGA-2Z-A9JD-01 12 53040651 53040651 C A KRT2 Missense_Mutation p.A448S 0.35 deleterious(0) probably_damaging(0.942) TCGA-2Z-A9JD-01 12 53040652 53040652 C T KRT2 Silent p.E447E 0.35 TCGA-2Z-A9JD-01 12 95228483 95228483 C G MIR492 3'Flank 0.31 TCGA-2Z-A9JD-01 13 46656573 46656573 T C CPB2 Intron 0.37 TCGA-2Z-A9JD-01 13 49852539 49852539 T A CDADC1 Silent p.A368A 0.40 TCGA-2Z-A9JD-01 14 23862152 23862152 C T MYH6 Missense_Mutation p.D1074N 0.39 deleterious(0.03) possibly_damaging(0.908) TCGA-2Z-A9JD-01 14 38678801 38678801 C - SSTR1 Frame_Shift_Del p.L70Wfs*13 0.12 TCGA-2Z-A9JD-01 14 72200389 72200389 T C SIPA1L1 Missense_Mutation p.F1644S 0.42 deleterious(0) probably_damaging(0.989) TCGA-2Z-A9JD-01 14 74422588 74422588 T C COQ6 Silent p.D146D 0.41 TCGA-2Z-A9JD-01 14 74769662 74769662 T C ABCD4 5'UTR 0.37 TCGA-2Z-A9JD-01 14 92336630 92336630 T - FBLN5 Frame_Shift_Del p.I429Sfs*8 0.25 TCGA-2Z-A9JD-01 15 40915982 40915983 - T CASC5 Frame_Shift_Ins p.D1201* 0.22 TCGA-2Z-A9JD-01 15 41313309 41313309 T C INO80 Silent p.P1021P 0.42 TCGA-2Z-A9JD-01 15 42640335 42640335 C A GANC Missense_Mutation p.P780Q 0.42 possibly_damaging(0.841) TCGA-2Z-A9JD-01 15 49284901 49284901 T C SECISBP2L Missense_Mutation p.D949G 0.24 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JD-01 15 85438656 85438656 A G SLC28A1 Intron 0.45 TCGA-2Z-A9JD-01 16 21147803 21147803 C T DNAH3 Missense_Mutation p.R243H 0.37 tolerated(0.07) benign(0.001) TCGA-2Z-A9JD-01 16 28222727 28222727 T A XPO6 5'UTR 0.36 TCGA-2Z-A9JD-01 16 426371 426371 G A TMEM8A Missense_Mutation p.S330F 0.47 tolerated(0.09) benign(0.023) TCGA-2Z-A9JD-01 16 67226969 67226969 G A E2F4 Silent p.K101K 0.45 TCGA-2Z-A9JD-01 16 720472 720472 T C RHOT2 Missense_Mutation p.L152P 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-2Z-A9JD-01 16 72845510 72845510 A G ZFHX3 Missense_Mutation p.V1277A 0.49 benign(0.23) TCGA-2Z-A9JD-01 16 79632693 79632693 G T MAF Silent p.P369P 0.07 TCGA-2Z-A9JD-01 16 89807213 89807213 T G FANCA Missense_Mutation p.N1276T 0.38 tolerated(0.12) possibly_damaging(0.728) TCGA-2Z-A9JD-01 16 90021581 90021581 C A DEF8 Silent p.A104A 0.26 TCGA-2Z-A9JD-01 17 1634093 1634093 C - WDR81 Frame_Shift_Del p.P1274Rfs*2 0.25 TCGA-2Z-A9JD-01 17 17049353 17049353 G A MPRIP Missense_Mutation p.D385N 0.30 deleterious(0.05) possibly_damaging(0.758) TCGA-2Z-A9JD-01 17 38498929 38498929 C T RARA Intron 0.65 TCGA-2Z-A9JD-01 17 41132377 41132377 A G PTGES3L-AARSD1 5'UTR 0.48 TCGA-2Z-A9JD-01 17 4863151 4863151 C A SPAG7 Missense_Mutation p.A160S 0.22 tolerated(0.72) benign(0.001) TCGA-2Z-A9JD-01 17 7164034 7164034 A G CLDN7 Silent p.L134L 0.24 TCGA-2Z-A9JD-01 17 78328138 78328138 C G RNF213 Intron 0.26 TCGA-2Z-A9JD-01 17 79910679 79910679 A G NOTUM 3'UTR 0.67 TCGA-2Z-A9JD-01 18 72999615 72999615 C A TSHZ1 Silent p.S706S 0.37 TCGA-2Z-A9JD-01 19 1010256 1010256 C T TMEM259 3'UTR 0.47 TCGA-2Z-A9JD-01 19 11352391 11352391 T C C19orf80 3'UTR 0.35 TCGA-2Z-A9JD-01 19 14063934 14063934 G T DCAF15 Intron 0.29 TCGA-2Z-A9JD-01 19 14281546 14281546 G A LPHN1 Silent p.P114P 0.47 TCGA-2Z-A9JD-01 19 17318004 17318004 G T MYO9B Missense_Mutation p.D1859Y 0.34 deleterious(0) probably_damaging(1) TCGA-2Z-A9JD-01 19 36205878 36205878 C T ZBTB32 Missense_Mutation p.A117V 0.41 tolerated(0.1) possibly_damaging(0.483) TCGA-2Z-A9JD-01 19 38684203 38684203 G C SIPA1L3 Silent p.R1541R 0.32 TCGA-2Z-A9JD-01 19 42492528 42492528 G C ATP1A3 Missense_Mutation p.T45R 0.34 deleterious(0.02) benign(0.13) TCGA-2Z-A9JD-01 19 45991773 45991773 C T RTN2 Missense_Mutation p.V485M 0.08 deleterious(0) probably_damaging(0.934) TCGA-2Z-A9JD-01 19 48945411 48945411 G C GRIN2D Missense_Mutation p.E815D 0.30 tolerated(0.25) possibly_damaging(0.531) TCGA-2Z-A9JD-01 19 51742955 51742955 G C CD33 3'UTR 0.30 TCGA-2Z-A9JD-01 1 103461460 103461460 G C COL11A1 Missense_Mutation p.A767G 0.05 unknown(0) TCGA-2Z-A9JD-01 1 113661942 113661942 A G LRIG2 Missense_Mutation p.Y923C 0.07 deleterious(0.01) possibly_damaging(0.832) TCGA-2Z-A9JD-01 1 145932026 145932026 C - PDZK1P1 RNA 0.17 TCGA-2Z-A9JD-01 1 152324407 152324407 C T FLG2 Missense_Mutation p.G1952E 0.45 benign(0.118) TCGA-2Z-A9JD-01 1 155028274 155028274 T G ADAM15 Missense_Mutation p.D207E 0.37 tolerated(0.45) probably_damaging(0.997) TCGA-2Z-A9JD-01 1 155106478 155106478 C A EFNA1 Missense_Mutation p.P185T 0.28 tolerated(0.08) benign(0.313) TCGA-2Z-A9JD-01 1 155279709 155279709 C T FDPS Silent p.A43A 0.42 TCGA-2Z-A9JD-01 1 158390085 158390085 T C OR10K2 Missense_Mutation p.H191R 0.06 deleterious(0.01) benign(0.033) TCGA-2Z-A9JD-01 1 158592846 158592846 C T SPTA1 Missense_Mutation p.R2016H 0.33 tolerated(0.05) benign(0.069) TCGA-2Z-A9JD-01 1 165877141 165877141 T A UCK2 3'UTR 0.35 TCGA-2Z-A9JD-01 1 206905963 206905963 A G MAPKAPK2 Missense_Mutation p.E368G 0.32 deleterious(0.03) benign(0.243) TCGA-2Z-A9JD-01 1 225445671 225445671 T C DNAH14 Missense_Mutation p.L2286S 0.48 benign(0.053) TCGA-2Z-A9JD-01 1 24120820 24120821 - G LYPLA2 Intron 0.33 TCGA-2Z-A9JD-01 1 2440261 2440261 A - PANK4 3'UTR 0.29 TCGA-2Z-A9JD-01 1 248737994 248737994 A G OR2T34 Missense_Mutation p.L22P 0.24 deleterious(0) probably_damaging(0.915) TCGA-2Z-A9JD-01 1 248737995 248737995 G T OR2T34 Missense_Mutation p.L22I 0.24 tolerated(0.22) benign(0.041) TCGA-2Z-A9JD-01 1 248738035 248738035 A C OR2T34 Silent p.S8S 0.28 TCGA-2Z-A9JD-01 1 35453206 35453206 T C ZMYM6 Silent p.Q1159Q 0.34 TCGA-2Z-A9JD-01 1 43907699 43907699 T C SZT2 Missense_Mutation p.C2534R 0.39 tolerated(0.31) benign(0.001) TCGA-2Z-A9JD-01 1 49100226 49100226 G A AGBL4 Missense_Mutation p.P297L 0.05 tolerated(0.15) possibly_damaging(0.501) TCGA-2Z-A9JD-01 1 6304270 6304270 C - HES3 5'UTR 0.23 TCGA-2Z-A9JD-01 1 8425963 8425975 CCTACGATGGGCT - RERE Frame_Shift_Del p.A449Tfs*33 0.25 TCGA-2Z-A9JD-01 1 95448663 95448663 G T ALG14 Missense_Mutation p.P207H 0.37 deleterious(0) probably_damaging(0.996) TCGA-2Z-A9JD-01 20 33464455 33464455 C T ACSS2 Missense_Mutation p.L3F 0.29 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-2Z-A9JD-01 20 43942753 43942753 G A RBPJL Missense_Mutation p.C279Y 0.07 tolerated(0.09) probably_damaging(1) TCGA-2Z-A9JD-01 21 43164161 43164161 T C RIPK4 Missense_Mutation p.E359G 0.40 tolerated(0.2) possibly_damaging(0.506) TCGA-2Z-A9JD-01 22 24002165 24002165 T G GUSBP11 RNA 0.12 TCGA-2Z-A9JD-01 22 42060017 42060017 T C XRCC6 3'UTR 0.33 TCGA-2Z-A9JD-01 22 42094053 42094053 C A C22orf46 3'UTR 0.24 TCGA-2Z-A9JD-01 2 11758487 11758487 G A GREB1 Silent p.Q1162Q 0.34 TCGA-2Z-A9JD-01 2 179400718 179400718 C A TTN Nonsense_Mutation p.E33586* 0.07 TCGA-2Z-A9JD-01 2 191065919 191065919 T C C2orf88 3'UTR 0.32 TCGA-2Z-A9JD-01 2 241622206 241622206 G T AQP12B Missense_Mutation p.L17I 0.69 tolerated(0.21) benign(0.133) TCGA-2Z-A9JD-01 2 27500849 27500849 G C DNAJC5G Missense_Mutation p.R114T 0.36 tolerated(0.23) benign(0.015) TCGA-2Z-A9JD-01 2 47637500 47637500 A - MSH2 Frame_Shift_Del p.K212Nfs*2 0.27 TCGA-2Z-A9JD-01 2 96049028 96049038 GAGGCCTGTCA - KCNIP3 Frame_Shift_Del p.A238Gfs*2 0.23 TCGA-2Z-A9JD-01 3 180334122 180334122 T C CCDC39 Silent p.T872T 0.68 TCGA-2Z-A9JD-01 3 49459554 49459554 C - AMT Frame_Shift_Del p.V81Cfs*15 0.10 TCGA-2Z-A9JD-01 3 52437652 52437657 GAAAGC AAAGG BAP1 Frame_Shift_Del p.A502Pfs*69 0.37 TCGA-2Z-A9JD-01 3 53684852 53684852 T G CACNA1D Missense_Mutation p.F177C 0.86 deleterious(0.03) probably_damaging(0.999) TCGA-2Z-A9JD-01 4 366865 366865 A G ZNF141 Missense_Mutation p.I213M 0.43 deleterious(0.04) benign(0.154) TCGA-2Z-A9JD-01 4 37445619 37445619 T C KIAA1239 Missense_Mutation p.M670T 0.38 tolerated(0.67) benign(0) TCGA-2Z-A9JD-01 4 40121601 40121601 T C N4BP2 Missense_Mutation p.S624P 0.36 tolerated(0.06) benign(0.055) TCGA-2Z-A9JD-01 4 77660481 77660481 T C SHROOM3 Silent p.P385P 0.35 TCGA-2Z-A9JD-01 4 996192 996192 C A IDUA Missense_Mutation p.Q370K 0.35 deleterious(0) possibly_damaging(0.604) TCGA-2Z-A9JD-01 5 135364679 135364679 C A TGFBI 5'UTR 0.26 TCGA-2Z-A9JD-01 5 138725581 138725581 G T MZB1 5'UTR 0.50 TCGA-2Z-A9JD-01 5 140741837 140741837 C T PCDHGB2 Missense_Mutation p.S712F 0.10 deleterious(0.04) benign(0.163) TCGA-2Z-A9JD-01 5 140788766 140788766 G T PCDHGB6 Missense_Mutation p.V333L 0.41 deleterious(0.04) benign(0.311) TCGA-2Z-A9JD-01 5 142281604 142281604 C A ARHGAP26 Missense_Mutation p.N234K 0.35 tolerated(0.06) possibly_damaging(0.557) TCGA-2Z-A9JD-01 5 149213215 149213215 G A PPARGC1B Missense_Mutation p.D527N 0.29 tolerated(0.13) benign(0.367) TCGA-2Z-A9JD-01 5 154200926 154200926 T C FAXDC2 Missense_Mutation p.I247V 0.37 tolerated(0.36) benign(0.038) TCGA-2Z-A9JD-01 5 159626178 159626178 G C FABP6 Intron 0.16 TCGA-2Z-A9JD-01 5 169127100 169127100 C A DOCK2 Silent p.T405T 0.33 TCGA-2Z-A9JD-01 5 33997612 33997612 G T AMACR Intron 0.28 TCGA-2Z-A9JD-01 5 55247359 55247359 T C IL6ST Silent p.R591R 0.33 TCGA-2Z-A9JD-01 5 74017604 74017604 T C GFM2 Missense_Mutation p.Y739C 0.47 deleterious(0) probably_damaging(1) TCGA-2Z-A9JD-01 6 134494465 134494467 CTT - SGK1 In_Frame_Del p.E216del 0.32 TCGA-2Z-A9JD-01 6 150004253 150004253 G C LATS1 Missense_Mutation p.L658V 0.30 tolerated(0.86) benign(0.028) TCGA-2Z-A9JD-01 6 155054955 155054955 G A SCAF8 5'UTR 0.40 TCGA-2Z-A9JD-01 6 30620929 30620930 - T C6orf136 3'UTR 0.22 TCGA-2Z-A9JD-01 6 41712458 41712458 G C PGC Missense_Mutation p.P50A 0.42 deleterious(0.01) possibly_damaging(0.48) TCGA-2Z-A9JD-01 6 51523921 51523921 T A PKHD1 Missense_Mutation p.D3668V 0.36 deleterious(0) probably_damaging(1) TCGA-2Z-A9JD-01 6 70850849 70850849 G C COL19A1 Missense_Mutation p.E484Q 0.31 tolerated(0.25) possibly_damaging(0.903) TCGA-2Z-A9JD-01 6 72113259 72113260 - GCAAAC MIR30A RNA 0.28 TCGA-2Z-A9JD-01 6 74227637 74227637 T C EEF1A1 Missense_Mutation p.M429V 0.40 deleterious_low_confidence(0) benign(0.001) TCGA-2Z-A9JD-01 7 128531535 128531535 G - KCP RNA 0.33 TCGA-2Z-A9JD-01 7 128767555 128767555 G A RP11-286H14.4 RNA 0.25 TCGA-2Z-A9JD-01 7 142983809 142983809 T C TMEM139 Silent p.L180L 0.30 TCGA-2Z-A9JD-01 7 143047464 143047464 G T CLCN1 Splice_Site p.X802_splice 0.60 TCGA-2Z-A9JD-01 7 151372596 151372597 - G PRKAG2 Frame_Shift_Ins p.D199Gfs*74 0.51 TCGA-2Z-A9JD-01 7 20738142 20738142 T C ABCB5 Missense_Mutation p.V708A 0.41 tolerated(1) benign(0.002) TCGA-2Z-A9JD-01 7 5352668 5352668 G T TNRC18 Silent p.S2618S 0.15 TCGA-2Z-A9JD-01 7 65557941 65557941 A G ASL 3'UTR 0.38 TCGA-2Z-A9JD-01 7 86568242 86568242 C A KIAA1324L Missense_Mutation p.K294N 0.49 tolerated(0.12) probably_damaging(0.984) TCGA-2Z-A9JD-01 7 94931604 94931604 A T PON1 Missense_Mutation p.D274E 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-2Z-A9JD-01 8 107670240 107670240 A G OXR1 Intron 0.42 TCGA-2Z-A9JD-01 8 135521962 135521962 A G ZFAT Missense_Mutation p.I1131T 0.41 deleterious(0) benign(0.196) TCGA-2Z-A9JD-01 8 141685559 141685559 C T PTK2 Missense_Mutation p.G868S 0.35 tolerated(0.67) probably_damaging(0.931) TCGA-2Z-A9JD-01 8 145732381 145732381 T C GPT Nonstop_Mutation p.*497Rext*? 0.36 TCGA-2Z-A9JD-01 8 17613134 17613134 G C MTUS1 Missense_Mutation p.D61E 0.12 tolerated(0.06) benign(0.167) TCGA-2Z-A9JD-01 8 27931921 27931923 CTG - NUGGC In_Frame_Del p.A2del 0.22 TCGA-2Z-A9JD-01 8 48868439 48868439 T A PRKDC Missense_Mutation p.I132F 0.37 probably_damaging(0.94) TCGA-2Z-A9JD-01 8 49831524 49831524 G T SNAI2 Missense_Mutation p.H217N 0.25 deleterious(0.01) benign(0.348) TCGA-2Z-A9JD-01 8 67089639 67089639 A G CRH Missense_Mutation p.L25P 0.37 deleterious(0) unknown(0) TCGA-2Z-A9JD-01 8 95653652 95653652 A T ESRP1 Nonsense_Mutation p.K36* 0.48 TCGA-2Z-A9JD-01 9 111849612 111849612 G A TMEM245 Silent p.L387L 0.36 TCGA-2Z-A9JD-01 9 126143930 126143930 C T DENND1A Silent p.K937K 0.26 TCGA-2Z-A9JD-01 9 131038966 131038966 C - SWI5 Frame_Shift_Del p.L121Sfs*46 0.23 TCGA-2Z-A9JD-01 9 133748374 133748374 T C ABL1 Silent p.T364T 0.32 TCGA-2Z-A9JD-01 9 138379517 138379517 G C PPP1R26 Missense_Mutation p.G1054A 0.37 tolerated(0.64) benign(0.161) TCGA-2Z-A9JD-01 9 139369535 139369535 A G SEC16A Missense_Mutation p.F845L 0.31 tolerated(0.12) benign(0.146) TCGA-2Z-A9JD-01 9 2115822 2115822 G C SMARCA2 Missense_Mutation p.D1153H 0.36 probably_damaging(0.961) TCGA-2Z-A9JD-01 9 35706215 35706215 T C TLN1 Missense_Mutation p.K1780R 0.22 tolerated(0.11) benign(0.219) TCGA-2Z-A9JD-01 9 71855017 71855017 T G TJP2 Missense_Mutation p.F871L 0.19 deleterious(0) benign(0.138) TCGA-2Z-A9JD-01 X 142718226 142718226 A C SLITRK4 Nonsense_Mutation p.Y233* 0.77 TCGA-2Z-A9JE-01 10 1279742 1279743 TT - ADARB2 Frame_Shift_Del p.K469Rfs*156 0.32 TCGA-2Z-A9JE-01 10 30315194 30315194 G A KIAA1462 Nonsense_Mutation p.Q1295* 0.46 TCGA-2Z-A9JE-01 10 32308823 32308823 T C KIF5B Missense_Mutation p.T757A 0.40 tolerated(0.25) benign(0) TCGA-2Z-A9JE-01 10 45473410 45473410 C A C10orf10 Silent p.L23L 0.47 TCGA-2Z-A9JE-01 10 47086821 47086842 AATCTCCACAAGGTGAAAACAG - NPY4R Frame_Shift_Del p.S14Afs*20 0.15 TCGA-2Z-A9JE-01 10 51623127 51623127 C T TIMM23 Missense_Mutation p.D30N 0.19 tolerated(0.19) benign(0.028) TCGA-2Z-A9JE-01 10 70776261 70776261 T A KIAA1279 3'UTR 0.43 TCGA-2Z-A9JE-01 10 90562530 90562530 C A LIPM 5'UTR 0.47 TCGA-2Z-A9JE-01 10 95066725 95066725 C T MYOF Missense_Mutation p.V2061M 0.46 tolerated_low_confidence(0.07) benign(0.192) TCGA-2Z-A9JE-01 11 118888998 118888998 G A RPS25 5'UTR 0.17 TCGA-2Z-A9JE-01 11 125618623 125618623 C T PATE1 Missense_Mutation p.L126F 0.33 tolerated(0.27) benign(0.058) TCGA-2Z-A9JE-01 11 36596889 36596889 A C RAG1 Missense_Mutation p.I679L 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.833) TCGA-2Z-A9JE-01 11 47498949 47498950 - A CELF1 Frame_Shift_Ins p.L290Ffs*9 0.21 TCGA-2Z-A9JE-01 11 57102553 57102553 T A SSRP1 Nonsense_Mutation p.K15* 0.42 TCGA-2Z-A9JE-01 11 61111630 61111630 G A DAK Silent p.A375A 0.43 TCGA-2Z-A9JE-01 11 71504494 71504494 G T FAM86C1 Missense_Mutation p.K76N 0.48 deleterious(0.01) possibly_damaging(0.844) TCGA-2Z-A9JE-01 12 11174899 11174899 G A TAS2R19 Missense_Mutation p.T91M 0.37 deleterious(0.02) benign(0.149) TCGA-2Z-A9JE-01 12 113873281 113873281 T A SDSL Silent p.I197I 0.39 TCGA-2Z-A9JE-01 12 131466438 131466438 T C GPR133 Missense_Mutation p.F107S 0.41 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-2Z-A9JE-01 12 50039567 50039567 G A FMNL3 3'UTR 0.30 TCGA-2Z-A9JE-01 12 50503431 50503431 C G GPD1 3'UTR 0.54 TCGA-2Z-A9JE-01 13 41635699 41635699 G A WBP4 5'UTR 0.36 TCGA-2Z-A9JE-01 13 49077015 49077015 G A RCBTB2 Missense_Mutation p.T321M 0.44 tolerated(0.08) probably_damaging(0.991) TCGA-2Z-A9JE-01 14 21161755 21161755 T A ANG Missense_Mutation p.V11D 0.38 deleterious(0) unknown(0) TCGA-2Z-A9JE-01 14 64939003 64939003 C A AKAP5 3'UTR 0.44 TCGA-2Z-A9JE-01 14 69866015 69866015 A G SLC39A9 5'UTR 0.46 TCGA-2Z-A9JE-01 14 75321933 75321933 C A PROX2 Missense_Mutation p.D334Y 0.51 deleterious(0) probably_damaging(1) TCGA-2Z-A9JE-01 14 77275538 77275538 T C ANGEL1 Silent p.T171T 0.38 TCGA-2Z-A9JE-01 15 25959381 25959381 A G ATP10A Missense_Mutation p.V595A 0.50 tolerated(0.16) benign(0.026) TCGA-2Z-A9JE-01 15 59466345 59466345 T C MYO1E Missense_Mutation p.Y715C 0.41 deleterious(0.04) probably_damaging(0.959) TCGA-2Z-A9JE-01 15 78917414 78917414 A T CHRNB4 3'UTR 0.52 TCGA-2Z-A9JE-01 15 78917415 78917415 G T CHRNB4 3'UTR 0.52 TCGA-2Z-A9JE-01 15 93563341 93563341 G A CHD2 Nonsense_Mutation p.W1669* 0.37 TCGA-2Z-A9JE-01 16 10525251 10525251 T C ATF7IP2 Silent p.S258S 0.39 TCGA-2Z-A9JE-01 16 11782282 11782282 G T TXNDC11 Missense_Mutation p.F640L 0.40 deleterious(0) possibly_damaging(0.582) TCGA-2Z-A9JE-01 16 14355241 14355241 G A MKL2 Silent p.A1030A 0.51 TCGA-2Z-A9JE-01 16 15702262 15702262 C T KIAA0430 Missense_Mutation p.M1356I 0.45 tolerated(0.51) benign(0.192) TCGA-2Z-A9JE-01 16 23226981 23226981 C T SCNN1G 3'UTR 0.40 TCGA-2Z-A9JE-01 16 29820995 29820995 C T MAZ Nonsense_Mutation p.Q472* 0.45 TCGA-2Z-A9JE-01 16 56966145 56966145 G A HERPUD1 5'UTR 0.05 TCGA-2Z-A9JE-01 16 66643431 66643431 G - CMTM3 Frame_Shift_Del 0.27 TCGA-2Z-A9JE-01 16 745598 745598 G T FBXL16 Missense_Mutation p.P320H 0.06 deleterious(0) probably_damaging(1) TCGA-2Z-A9JE-01 17 15952256 15952256 A T NCOR1 Missense_Mutation p.Y2147N 0.61 probably_damaging(0.997) TCGA-2Z-A9JE-01 17 29298214 29298214 C A RNF135 Nonsense_Mutation p.C41* 0.68 TCGA-2Z-A9JE-01 17 3638168 3638168 G T ITGAE Nonsense_Mutation p.Y866* 0.29 TCGA-2Z-A9JE-01 17 41166305 41166305 G A IFI35 Missense_Mutation p.E286K 0.20 tolerated(0.29) benign(0.011) TCGA-2Z-A9JE-01 17 43348527 43348527 G A MAP3K14-AS1 3'Flank 0.38 TCGA-2Z-A9JE-01 17 46655457 46655457 C T HOXB4 Silent p.P75P 0.31 TCGA-2Z-A9JE-01 17 4883018 4883018 G T CAMTA2 Missense_Mutation p.S556R 0.27 tolerated(0.35) benign(0.185) TCGA-2Z-A9JE-01 17 7252465 7252465 G T ACAP1 Silent p.P610P 0.07 TCGA-2Z-A9JE-01 17 79214932 79214932 A C C17orf89 3'UTR 0.26 TCGA-2Z-A9JE-01 17 80321558 80321558 T A TEX19 3'UTR 0.60 TCGA-2Z-A9JE-01 17 8053954 8053954 C A PER1 Missense_Mutation p.G24V 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.579) TCGA-2Z-A9JE-01 19 3207869 3207869 T - NCLN 3'UTR 0.22 TCGA-2Z-A9JE-01 19 36387912 36387912 G A NFKBID Missense_Mutation p.P19S 0.43 tolerated(0.16) benign(0.004) TCGA-2Z-A9JE-01 19 36729364 36729364 A G ZNF146 3'UTR 0.43 TCGA-2Z-A9JE-01 19 57328814 57328814 C A PEG3 Missense_Mutation p.R332S 0.46 deleterious(0) probably_damaging(0.962) TCGA-2Z-A9JE-01 19 58265364 58265364 A G ZNF776 Missense_Mutation p.E289G 0.55 deleterious(0.03) benign(0.193) TCGA-2Z-A9JE-01 1 115592938 115592938 A C TSPAN2 3'UTR 0.25 TCGA-2Z-A9JE-01 1 12067259 12067262 GCTT AA MFN2 Frame_Shift_Del p.L675Sfs*29 0.40 TCGA-2Z-A9JE-01 1 12254074 12254074 A C TNFRSF1B Missense_Mutation p.M284L 0.45 tolerated(1) benign(0.001) TCGA-2Z-A9JE-01 1 156594250 156594250 C G HAPLN2 Missense_Mutation p.L183V 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-2Z-A9JE-01 1 160104412 160104412 T G ATP1A2 Splice_Site p.X655_splice 0.47 TCGA-2Z-A9JE-01 1 19430633 19430633 C A UBR4 Missense_Mutation p.K4282N 0.55 probably_damaging(0.95) TCGA-2Z-A9JE-01 1 211432986 211432986 C T RCOR3 Silent p.G28G 0.58 TCGA-2Z-A9JE-01 1 211846908 211846908 C A NEK2 Nonsense_Mutation p.G158* 0.36 TCGA-2Z-A9JE-01 1 226040425 226040425 G A TMEM63A Silent p.L615L 0.54 TCGA-2Z-A9JE-01 1 31452956 31452956 G T PUM1 Missense_Mutation p.P436Q 0.36 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-2Z-A9JE-01 1 43681027 43681027 A G WDR65 3'Flank 0.49 TCGA-2Z-A9JE-01 1 46073205 46073206 - A NASP Frame_Shift_Ins p.T209Nfs*3 0.32 TCGA-2Z-A9JE-01 1 55197174 55197174 C - TTC4 Frame_Shift_Del p.L233Sfs*16 0.27 TCGA-2Z-A9JE-01 1 57383327 57383327 C T C8A Missense_Mutation p.P565S 0.48 deleterious(0) probably_damaging(1) TCGA-2Z-A9JE-01 1 7811258 7811258 G T CAMTA1 Splice_Site p.X1564_splice 0.06 TCGA-2Z-A9JE-01 1 85112897 85112897 A C SSX2IP 3'UTR 0.50 TCGA-2Z-A9JE-01 20 330439 330439 T C NRSN2 Missense_Mutation p.L51P 0.60 tolerated(0.17) probably_damaging(0.918) TCGA-2Z-A9JE-01 20 35467740 35467740 G T SOGA1 Silent p.A264A 0.43 TCGA-2Z-A9JE-01 20 52194908 52194908 T C ZNF217 Missense_Mutation p.N483S 0.47 deleterious(0) probably_damaging(0.99) TCGA-2Z-A9JE-01 21 17135271 17135271 T A USP25 Missense_Mutation p.L36Q 0.59 deleterious(0) possibly_damaging(0.766) TCGA-2Z-A9JE-01 21 30699093 30699114 CCCTCATGGACTTTATTCTTTG - BACH1 Frame_Shift_Del p.P317Lfs*12 0.51 TCGA-2Z-A9JE-01 21 46032738 46032738 C T KRTAP10-8 Missense_Mutation p.H241Y 0.53 deleterious(0.03) unknown(0) TCGA-2Z-A9JE-01 2 105716403 105716403 A G MRPS9 3'UTR 0.36 TCGA-2Z-A9JE-01 2 11333932 11333932 A G ROCK2 Silent p.D1220D 0.48 TCGA-2Z-A9JE-01 2 128341726 128341726 A G MYO7B Missense_Mutation p.N458S 0.47 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JE-01 2 175346273 175346273 G A GPR155 Missense_Mutation p.P138S 0.49 tolerated(0.56) possibly_damaging(0.557) TCGA-2Z-A9JE-01 2 18112835 18112835 T - KCNS3 Frame_Shift_Del p.I187Tfs*6 0.27 TCGA-2Z-A9JE-01 2 219360546 219360546 G T USP37 Missense_Mutation p.A470E 0.45 deleterious(0.03) benign(0.004) TCGA-2Z-A9JE-01 2 219563981 219563981 A G STK36 Silent p.L1238L 0.57 TCGA-2Z-A9JE-01 2 228174025 228174025 A T COL4A3 Silent p.S1582S 0.52 TCGA-2Z-A9JE-01 2 232141353 232141353 C A ARMC9 Missense_Mutation p.P447T 0.53 tolerated(0.16) benign(0.029) TCGA-2Z-A9JE-01 2 234602011 234602011 C A UGT1A6 Missense_Mutation p.L121M 0.34 tolerated(0.72) benign(0.004) TCGA-2Z-A9JE-01 2 238672880 238672880 G C LRRFIP1 3'UTR 0.05 TCGA-2Z-A9JE-01 2 242149796 242149796 T G ANO7 Silent p.L536L 0.37 TCGA-2Z-A9JE-01 2 46583908 46583908 G A EPAS1 Missense_Mutation p.D139N 0.41 deleterious(0) probably_damaging(0.983) TCGA-2Z-A9JE-01 2 70931525 70931525 T C ADD2 Missense_Mutation p.I84V 0.28 tolerated(0.06) benign(0.004) TCGA-2Z-A9JE-01 2 97505808 97505808 C A ANKRD23 Missense_Mutation p.A217S 0.52 deleterious(0) probably_damaging(0.951) TCGA-2Z-A9JE-01 3 113392215 113392215 T - KIAA2018 Frame_Shift_Del p.N19Tfs*20 0.47 TCGA-2Z-A9JE-01 3 38404498 38404498 G A XYLB Missense_Mutation p.G94E 0.94 deleterious(0) probably_damaging(0.995) TCGA-2Z-A9JE-01 3 4821261 4821263 ATC T ITPR1 Frame_Shift_Del p.I2092Yfs*8 0.46 TCGA-2Z-A9JE-01 3 52439781 52439781 C A BAP1 Missense_Mutation p.D311Y 0.89 deleterious_low_confidence(0) benign(0.002) TCGA-2Z-A9JE-01 4 113539801 113539801 C A C4orf21 Missense_Mutation p.G466V 0.41 tolerated(0.08) benign(0.003) TCGA-2Z-A9JE-01 4 1165761 1165761 G T SPON2 Silent p.S33S 0.39 TCGA-2Z-A9JE-01 4 154517528 154517528 T C KIAA0922 Missense_Mutation p.I705T 0.41 deleterious(0) probably_damaging(0.99) TCGA-2Z-A9JE-01 4 728641 728641 C T PCGF3 Intron 0.08 TCGA-2Z-A9JE-01 5 134118720 134118720 T A DDX46 Nonsense_Mutation p.C377* 0.43 TCGA-2Z-A9JE-01 5 140712543 140712543 G A PCDHGA1 Silent p.R764R 0.28 TCGA-2Z-A9JE-01 5 140769788 140769788 C T PCDHGB4 Silent p.C779C 0.24 TCGA-2Z-A9JE-01 5 150920245 150920245 G A FAT2 Silent p.R2974R 0.43 TCGA-2Z-A9JE-01 5 52157299 52157299 G A ITGA1 Silent p.P67P 0.05 TCGA-2Z-A9JE-01 5 52285291 52285291 G A ITGA2 5'UTR 0.39 TCGA-2Z-A9JE-01 6 123116945 123116945 T C SMPDL3A Missense_Mutation p.V79A 0.48 deleterious(0.01) benign(0.217) TCGA-2Z-A9JE-01 6 139262521 139262521 T - REPS1 Frame_Shift_Del p.K362Nfs*6 0.29 TCGA-2Z-A9JE-01 6 161770991 161770991 T G PARK2 3'UTR 0.37 TCGA-2Z-A9JE-01 6 26285734 26285734 G A HIST1H4H 5'UTR 0.42 TCGA-2Z-A9JE-01 6 30614974 30614974 G C C6orf136 5'UTR 0.39 TCGA-2Z-A9JE-01 6 39869623 39869623 G T DAAM2 Missense_Mutation p.R1006L 0.51 deleterious(0.01) benign(0.023) TCGA-2Z-A9JE-01 6 87725556 87725556 T C HTR1E Silent p.P168P 0.05 TCGA-2Z-A9JE-01 6 96659169 96659191 TGTTATGAGCAATCAGTAAATTT AATTA FUT9 3'UTR 0.49 TCGA-2Z-A9JE-01 7 106301196 106301196 C G CCDC71L Silent p.L49L 0.56 TCGA-2Z-A9JE-01 7 21940797 21940797 G C DNAH11 Missense_Mutation p.W4499C 0.47 benign(0.114) TCGA-2Z-A9JE-01 7 288293 288293 C A FAM20C Missense_Mutation p.F323L 0.47 deleterious(0) benign(0.063) TCGA-2Z-A9JE-01 7 6180604 6180605 - TA USP42 Frame_Shift_Ins p.E263Wfs*3 0.30 TCGA-2Z-A9JE-01 7 76885742 76885744 AGA - CCDC146 In_Frame_Del p.E201del 0.20 TCGA-2Z-A9JE-01 7 82997040 82997040 C G SEMA3E Missense_Mutation p.E730D 0.49 tolerated(0.09) benign(0.373) TCGA-2Z-A9JE-01 8 145066228 145066230 CTG - GRINA In_Frame_Del p.W226del 0.48 TCGA-2Z-A9JE-01 8 19680900 19680901 - T INTS10 Frame_Shift_Ins p.Y206Lfs*7 0.27 TCGA-2Z-A9JE-01 8 48843232 48843234 CTG - PRKDC Nonsense_Mutation p.C630_R631delins* 0.40 TCGA-2Z-A9JE-01 9 104433388 104433388 A T GRIN3A Missense_Mutation p.F436I 0.46 deleterious(0) possibly_damaging(0.859) TCGA-2Z-A9JE-01 9 123533652 123533652 C G FBXW2 Missense_Mutation p.W350C 0.34 deleterious(0.02) probably_damaging(0.921) TCGA-2Z-A9JE-01 9 130197411 130197411 G A ZNF79 Missense_Mutation p.E50K 0.41 deleterious(0.03) benign(0) TCGA-2Z-A9JE-01 9 84564040 84564040 G A RP11-383M4.6 Intron 0.52 TCGA-2Z-A9JE-01 9 95179162 95179162 T C OMD Missense_Mutation p.M227V 0.42 deleterious(0) probably_damaging(0.986) TCGA-2Z-A9JE-01 9 97325634 97325634 G A FBP2 Missense_Mutation p.P272L 0.54 deleterious(0) benign(0.143) TCGA-2Z-A9JE-01 X 12939866 12939866 T A TLR8 Missense_Mutation p.Y903N 0.90 tolerated(0.29) possibly_damaging(0.454) TCGA-2Z-A9JE-01 X 14863248 14863248 T G FANCB Missense_Mutation p.T553P 0.88 deleterious(0) benign(0.004) TCGA-2Z-A9JE-01 X 78010830 78010830 C G LPAR4 Missense_Mutation p.S155C 0.96 deleterious(0) probably_damaging(0.961) TCGA-2Z-A9JG-01 10 134011925 134011925 A T DPYSL4 Nonsense_Mutation p.K210* 0.62 TCGA-2Z-A9JG-01 10 135438923 135438923 T C FRG2B Missense_Mutation p.K173E 0.46 deleterious(0.03) probably_damaging(0.986) TCGA-2Z-A9JG-01 10 63422752 63422752 T - C10orf107 5'UTR 0.13 TCGA-2Z-A9JG-01 10 63829547 63829547 A G ARID5B Missense_Mutation p.H397R 0.55 deleterious(0) probably_damaging(0.96) TCGA-2Z-A9JG-01 11 101829047 101829047 C G KIAA1377 Missense_Mutation p.L219V 0.32 tolerated(0.05) possibly_damaging(0.895) TCGA-2Z-A9JG-01 11 118377152 118377152 T A KMT2A Silent p.P3515P 0.36 TCGA-2Z-A9JG-01 11 118943998 118944000 CGT - VPS11 In_Frame_Del p.V325del 0.35 TCGA-2Z-A9JG-01 11 2608884 2608884 C G KCNQ1 Missense_Mutation p.L405V 0.36 tolerated(0.5) benign(0.005) TCGA-2Z-A9JG-01 11 51411524 51411524 A C OR4A5 Missense_Mutation p.M291R 0.42 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-2Z-A9JG-01 11 61564306 61564306 G A FEN1 3'UTR 0.42 TCGA-2Z-A9JG-01 11 65395000 65395000 C G PCNXL3 Missense_Mutation p.L1217V 0.39 tolerated(0.16) benign(0.138) TCGA-2Z-A9JG-01 12 104379491 104379491 T G TDG Missense_Mutation p.S359A 0.48 tolerated_low_confidence(0.13) benign(0.002) TCGA-2Z-A9JG-01 12 111729279 111729279 G A CUX2 Missense_Mutation p.S120N 0.15 tolerated(0.47) benign(0.051) TCGA-2Z-A9JG-01 12 120795647 120795647 A T MSI1 Missense_Mutation p.I169N 0.19 deleterious(0.05) probably_damaging(0.997) TCGA-2Z-A9JG-01 12 27950834 27950834 T A KLHL42 Missense_Mutation p.V418E 0.34 deleterious(0) probably_damaging(0.98) TCGA-2Z-A9JG-01 12 49391280 49391280 A G DDN Missense_Mutation p.V460A 0.58 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-2Z-A9JG-01 12 51639787 51639787 C T SMAGP Missense_Mutation p.A78T 0.56 tolerated(0.26) benign(0.034) TCGA-2Z-A9JG-01 12 6103203 6103203 G T VWF Silent p.V2141V 0.29 TCGA-2Z-A9JG-01 12 88523533 88523533 C AAAACA CEP290 Frame_Shift_Ins p.V264Cfs*9 0.11 TCGA-2Z-A9JG-01 13 28794514 28794514 A G PAN3 Silent p.P333P 0.45 TCGA-2Z-A9JG-01 13 32808840 32808840 T C FRY Missense_Mutation p.L1886S 0.12 deleterious(0) possibly_damaging(0.794) TCGA-2Z-A9JG-01 14 106494224 106494224 T C IGHV2-5 Missense_Mutation p.I90V 0.42 deleterious(0.05) benign(0.035) TCGA-2Z-A9JG-01 14 23517509 23517509 G C CDH24 Missense_Mutation p.P714A 0.44 tolerated(0.15) benign(0.002) TCGA-2Z-A9JG-01 14 51111608 51111608 A T SAV1 Missense_Mutation p.H220Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JG-01 14 69951494 69951494 G C PLEKHD1 5'UTR 0.50 TCGA-2Z-A9JG-01 15 32928491 32928491 T C ARHGAP11A Missense_Mutation p.L506S 0.36 deleterious(0) probably_damaging(1) TCGA-2Z-A9JG-01 15 43067770 43067770 C T TTBK2 Missense_Mutation p.A521T 0.08 tolerated(0.06) benign(0.017) TCGA-2Z-A9JG-01 15 43769942 43769942 A C TP53BP1 Silent p.P268P 0.34 TCGA-2Z-A9JG-01 15 65054689 65054689 C T RBPMS2 Intron 0.47 TCGA-2Z-A9JG-01 15 80215197 80215197 C T C15orf37 Missense_Mutation p.L28F 0.29 possibly_damaging(0.765) TCGA-2Z-A9JG-01 15 82336360 82336360 T C MEX3B Missense_Mutation p.Y284C 0.41 deleterious(0.02) probably_damaging(0.94) TCGA-2Z-A9JG-01 16 27523094 27523094 T C GTF3C1 Missense_Mutation p.M368V 0.54 tolerated(0.12) possibly_damaging(0.527) TCGA-2Z-A9JG-01 16 30795034 30795034 G A ZNF629 Silent p.P205P 0.65 TCGA-2Z-A9JG-01 16 55359021 55359021 T G IRX6 Missense_Mutation p.F6L 0.50 deleterious(0) probably_damaging(0.993) TCGA-2Z-A9JG-01 16 75674216 75674216 T C KARS Missense_Mutation p.H113R 0.58 tolerated(0.26) benign(0.012) TCGA-2Z-A9JG-01 17 41002294 41002294 C T AOC2 Missense_Mutation p.P734S 0.55 tolerated(0.1) benign(0.006) TCGA-2Z-A9JG-01 17 42636200 42636200 G A FZD2 Missense_Mutation p.V382I 0.27 tolerated(0.56) benign(0.015) TCGA-2Z-A9JG-01 17 62518864 62518864 G - CEP95 Frame_Shift_Del p.E255Sfs*24 0.34 TCGA-2Z-A9JG-01 17 72919094 72919095 CA G USH1G Frame_Shift_Del p.L25Pfs*9 0.25 TCGA-2Z-A9JG-01 17 7758984 7758984 C G TMEM88 Silent p.A144A 0.21 TCGA-2Z-A9JG-01 18 18600173 18600174 TA - ROCK1 Nonsense_Mutation p.Y433* 0.30 TCGA-2Z-A9JG-01 18 3254019 3254019 C T MYL12A Missense_Mutation p.A105V 0.37 deleterious(0.01) benign(0.334) TCGA-2Z-A9JG-01 18 7016662 7016662 A G LAMA1 Silent p.Y939Y 0.33 TCGA-2Z-A9JG-01 19 17379586 17379586 G T BABAM1 5'UTR 0.06 TCGA-2Z-A9JG-01 19 36674230 36674230 T A ZNF565 Missense_Mutation p.H213L 0.40 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9JG-01 19 38102608 38102609 AA - ZNF540 Frame_Shift_Del p.K143Nfs*4 0.28 TCGA-2Z-A9JG-01 19 50747513 50747513 G A MYH14 Missense_Mutation p.V377I 0.46 tolerated(0.23) benign(0.028) TCGA-2Z-A9JG-01 19 51581153 51581153 G A KLK14 3'Flank 0.67 TCGA-2Z-A9JG-01 19 5786483 5786483 A T DUS3L Silent p.I519I 0.44 TCGA-2Z-A9JG-01 1 1267767 1267767 T C TAS1R3 Missense_Mutation p.Y286H 0.37 tolerated(0.75) benign(0.015) TCGA-2Z-A9JG-01 1 156767106 156767106 A C PRCC Missense_Mutation p.K454N 0.39 deleterious(0) probably_damaging(1) TCGA-2Z-A9JG-01 1 160097482 160097482 G A ATP1A2 Missense_Mutation p.A297T 0.33 deleterious(0) probably_damaging(0.978) TCGA-2Z-A9JG-01 1 179310206 179310206 T G SOAT1 Missense_Mutation p.F181V 0.48 deleterious(0.02) benign(0.2) TCGA-2Z-A9JG-01 1 183495889 183495889 C T SMG7 Silent p.H157H 0.38 TCGA-2Z-A9JG-01 1 186289494 186289494 G - TPR Frame_Shift_Del p.P2173Hfs*19 0.30 TCGA-2Z-A9JG-01 1 234743069 234743069 C G IRF2BP2 Silent p.S526S 0.45 TCGA-2Z-A9JG-01 1 244849928 244849928 T A DESI2 Silent p.I24I 0.24 TCGA-2Z-A9JG-01 1 247081542 247081552 TTATGTTTACC - AHCTF1 Splice_Site p.X50_splice 0.20 TCGA-2Z-A9JG-01 1 45101208 45101208 C G RNF220 Intron 0.23 TCGA-2Z-A9JG-01 1 66088612 66088612 A G LEPR Missense_Mutation p.D874G 0.36 deleterious(0) possibly_damaging(0.606) TCGA-2Z-A9JG-01 1 8422740 8422740 G T RERE Intron 0.30 TCGA-2Z-A9JG-01 1 87329157 87329157 T A SEP15 Nonstop_Mutation p.*163Yext*? 0.38 TCGA-2Z-A9JG-01 20 32217693 32217693 C A CBFA2T2 Missense_Mutation p.P410T 0.47 tolerated(0.1) benign(0.067) TCGA-2Z-A9JG-01 20 40713469 40713469 C T PTPRT Missense_Mutation p.R1330H 0.40 tolerated(0.12) benign(0.022) TCGA-2Z-A9JG-01 20 49354557 49354557 A C PARD6B Missense_Mutation p.N77T 0.36 deleterious(0) probably_damaging(0.939) TCGA-2Z-A9JG-01 21 31709386 31709386 C A KRTAP27-1 Missense_Mutation p.G201C 0.21 deleterious(0) probably_damaging(1) TCGA-2Z-A9JG-01 21 47648531 47648531 T C LSS Intron 0.24 TCGA-2Z-A9JG-01 22 18138483 18138483 G C BCL2L13 Silent p.A2A 0.44 TCGA-2Z-A9JG-01 22 20109854 20109854 G T RANBP1 Missense_Mutation p.D74Y 0.34 tolerated(0.05) possibly_damaging(0.538) TCGA-2Z-A9JG-01 22 38690505 38690505 C G CSNK1E Missense_Mutation p.E307D 0.45 tolerated_low_confidence(0.22) benign(0.001) TCGA-2Z-A9JG-01 22 50591546 50591546 A C MOV10L1 Silent p.R989R 0.40 TCGA-2Z-A9JG-01 2 114000281 114000281 G T PAX8 Missense_Mutation p.P155H 0.25 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9JG-01 2 177054137 177054137 G T HOXD1 Missense_Mutation p.S203I 0.60 deleterious(0) possibly_damaging(0.701) TCGA-2Z-A9JG-01 2 233344647 233344647 A G ECEL1 3'UTR 0.22 TCGA-2Z-A9JG-01 2 86272888 86272888 G A POLR1A Missense_Mutation p.S913L 0.29 deleterious(0) probably_damaging(0.982) TCGA-2Z-A9JG-01 3 111799843 111799845 GAA T TMPRSS7 Frame_Shift_Del p.G689Vfs*22 0.34 TCGA-2Z-A9JG-01 3 150421731 150421731 C G FAM194A 5'UTR 0.09 TCGA-2Z-A9JG-01 3 15287046 15287046 A G CAPN7 Silent p.P626P 0.30 TCGA-2Z-A9JG-01 3 52392687 52392687 G - DNAH1 Frame_Shift_Del p.V1401Wfs*5 0.30 TCGA-2Z-A9JG-01 4 126239708 126239708 T C FAT4 Silent p.T714T 0.25 TCGA-2Z-A9JG-01 4 39465225 39465225 G - LIAS Frame_Shift_Del 0.42 TCGA-2Z-A9JG-01 4 39779353 39779353 G A UBE2K Missense_Mutation p.V151M 0.29 tolerated(0.15) benign(0.028) TCGA-2Z-A9JG-01 4 47033664 47033664 T C GABRB1 5'UTR 0.33 TCGA-2Z-A9JG-01 4 66535302 66535302 G T EPHA5 Silent p.L53L 0.66 TCGA-2Z-A9JG-01 5 138119018 138119018 C A CTNNA1 Silent p.L86L 0.54 TCGA-2Z-A9JG-01 5 139003004 139003004 T A UBE2D2 Nonsense_Mutation p.L119* 0.47 TCGA-2Z-A9JG-01 5 151231003 151231003 G A GLRA1 Missense_Mutation p.T287I 0.24 deleterious(0) probably_damaging(0.986) TCGA-2Z-A9JG-01 5 36104069 36104069 T C LMBRD2 3'UTR 0.38 TCGA-2Z-A9JG-01 5 93076747 93076747 C T POU5F2 Missense_Mutation p.A175T 0.55 tolerated(0.09) possibly_damaging(0.798) TCGA-2Z-A9JG-01 5 98262183 98262183 C A CHD1 5'UTR 0.57 TCGA-2Z-A9JG-01 6 11185765 11185765 T C NEDD9 Missense_Mutation p.Y712C 0.42 tolerated(0.17) possibly_damaging(0.895) TCGA-2Z-A9JG-01 6 142491530 142491530 T - VTA1 Frame_Shift_Del p.I128Kfs*12 0.35 TCGA-2Z-A9JG-01 6 152497619 152497619 G A SYNE1 Missense_Mutation p.A7846V 0.35 probably_damaging(0.988) TCGA-2Z-A9JG-01 6 160872141 160872141 C T SLC22A3 3'UTR 0.33 TCGA-2Z-A9JG-01 6 33245150 33245150 A C B3GALT4 5'UTR 0.47 TCGA-2Z-A9JG-01 6 4892379 4892379 A G CDYL Missense_Mutation p.T153A 0.41 tolerated(0.38) benign(0.012) TCGA-2Z-A9JG-01 6 64421622 64421622 A - PHF3 Frame_Shift_Del p.S1382Vfs*3 0.29 TCGA-2Z-A9JG-01 7 129760626 129760626 T C KLHDC10 Silent p.G171G 0.31 TCGA-2Z-A9JG-01 7 158528197 158528197 G A ESYT2 Silent p.G861G 0.20 TCGA-2Z-A9JG-01 7 37960495 37960495 C A EPDR1 5'UTR 0.30 TCGA-2Z-A9JG-01 7 4007018 4007018 A G SDK1 Missense_Mutation p.R500G 0.25 tolerated(0.35) benign(0.045) TCGA-2Z-A9JG-01 7 99008752 99008752 G A BUD31 Missense_Mutation p.D13N 0.60 deleterious(0.04) benign(0.031) TCGA-2Z-A9JG-01 7 99725163 99725163 C T MBLAC1 Missense_Mutation p.P49S 0.34 deleterious_low_confidence(0.05) benign(0.048) TCGA-2Z-A9JG-01 8 1951402 1951402 T G KBTBD11 3'UTR 0.56 TCGA-2Z-A9JG-01 8 21843116 21843116 T C XPO7 Silent p.V497V 0.60 TCGA-2Z-A9JG-01 8 53596456 53596456 A G RB1CC1 Silent p.S63S 0.29 TCGA-2Z-A9JG-01 8 63936714 63936714 A - GGH Frame_Shift_Del p.P178Lfs*8 0.19 TCGA-2Z-A9JG-01 8 68087770 68087770 T G CSPP1 Intron 0.27 TCGA-2Z-A9JG-01 9 101546386 101546386 A C ANKS6 Missense_Mutation p.L321V 0.24 tolerated(0.65) benign(0.004) TCGA-2Z-A9JG-01 9 130742371 130742371 A C FAM102A Missense_Mutation p.F16V 0.31 tolerated(0.14) benign(0.022) TCGA-2Z-A9JG-01 9 136253234 136253234 T G C9orf96 Missense_Mutation p.S100A 0.44 deleterious(0.04) benign(0.17) TCGA-2Z-A9JG-01 9 35714845 35714845 G T TLN1 Missense_Mutation p.A928D 0.30 deleterious(0) probably_damaging(0.991) TCGA-2Z-A9JG-01 X 11139962 11139962 T C HCCS 3'UTR 0.95 TCGA-2Z-A9JG-01 X 27765728 27765728 G A DCAF8L2 Missense_Mutation p.R239H 0.84 tolerated(0.09) benign(0.045) TCGA-2Z-A9JG-01 X 46918210 46918211 AA T JADE3 Frame_Shift_Del p.K735Cfs*6 0.42 TCGA-2Z-A9JI-01 10 75889698 75889698 T C AP3M1 Silent p.L212L 0.33 TCGA-2Z-A9JI-01 12 121013657 121013657 C T RNF10 Missense_Mutation p.R755C 0.06 deleterious(0.04) benign(0.425) TCGA-2Z-A9JI-01 12 133764464 133764464 C T ZNF268 Missense_Mutation p.P14S 0.21 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-2Z-A9JI-01 13 51287294 51287294 G T DLEU7 3'UTR 0.08 TCGA-2Z-A9JI-01 16 67907124 67907124 G A EDC4 5'UTR 0.20 TCGA-2Z-A9JI-01 17 38855731 38855731 G C KRT24 Missense_Mutation p.I442M 0.29 deleterious(0) probably_damaging(1) TCGA-2Z-A9JI-01 18 22006686 22006686 G T IMPACT 5'UTR 0.08 TCGA-2Z-A9JI-01 1 11141197 11141197 T C EXOSC10 Missense_Mutation p.N460S 0.04 deleterious(0.01) benign(0.184) TCGA-2Z-A9JI-01 1 65330487 65330487 G A JAK1 Nonsense_Mutation p.Q387* 0.13 TCGA-2Z-A9JI-01 2 119727691 119727691 T A MARCO Silent p.V67V 0.18 TCGA-2Z-A9JI-01 3 184035257 184035257 C T EIF4G1 Missense_Mutation p.S106F 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-2Z-A9JI-01 6 11104652 11104652 A C ERVFRD-1 Missense_Mutation p.F298V 0.13 tolerated(0.26) possibly_damaging(0.87) TCGA-2Z-A9JI-01 7 13946127 13946127 A G ETV1 Silent p.D346D 0.14 TCGA-2Z-A9JI-01 8 48815253 48815253 G A PRKDC Nonsense_Mutation p.Q1049* 0.10 TCGA-2Z-A9JI-01 8 86019519 86019519 G A LRRCC1 5'UTR 0.05 TCGA-2Z-A9JJ-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.38 TCGA-2Z-A9JJ-01 11 107427686 107427686 C T ALKBH8 Missense_Mutation p.R58Q 0.34 tolerated(0.17) probably_damaging(0.999) TCGA-2Z-A9JJ-01 11 988573 988573 C T AP2A2 Missense_Mutation p.R385W 0.07 deleterious(0) probably_damaging(1) TCGA-2Z-A9JJ-01 12 26810812 26810812 G A ITPR2 Nonsense_Mutation p.Q674* 0.29 TCGA-2Z-A9JJ-01 15 44955666 44955666 C T SPG11 Silent p.A60A 0.46 TCGA-2Z-A9JJ-01 16 69776046 69776046 G T NOB1 3'UTR 0.09 TCGA-2Z-A9JJ-01 17 72537820 72537820 G T CD300C Missense_Mutation p.L195I 0.33 tolerated(0.07) probably_damaging(0.916) TCGA-2Z-A9JJ-01 19 9062897 9062897 G A MUC16 Silent p.I8183I 0.44 TCGA-2Z-A9JJ-01 1 151679166 151679166 C T CELF3 Missense_Mutation p.A323T 0.44 tolerated(0.35) benign(0.043) TCGA-2Z-A9JJ-01 20 2774767 2774767 T C CPXM1 3'UTR 0.09 TCGA-2Z-A9JJ-01 21 43230577 43230577 T G PRDM15 Missense_Mutation p.Q1228P 0.33 deleterious(0.04) probably_damaging(0.949) TCGA-2Z-A9JJ-01 3 48687979 48687979 C A CELSR3 Missense_Mutation p.G2136C 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-2Z-A9JJ-01 6 27879146 27879146 G T OR2B2 Missense_Mutation p.Q318K 0.05 tolerated_low_confidence(0.61) benign(0) TCGA-2Z-A9JJ-01 6 30691726 30691726 C G TUBB Missense_Mutation p.A296G 0.33 deleterious_low_confidence(0) benign(0.173) TCGA-2Z-A9JJ-01 6 34506127 34506127 T C SPDEF Missense_Mutation p.Q311R 0.12 deleterious(0) probably_damaging(0.997) TCGA-2Z-A9JJ-01 6 38835956 38835956 T C DNAH8 Missense_Mutation p.M2054T 0.18 probably_damaging(0.998) TCGA-2Z-A9JJ-01 6 56382076 56382076 T C DST Missense_Mutation p.K3470E 0.30 probably_damaging(0.999) TCGA-2Z-A9JJ-01 7 20739491 20739492 - T ABCB5 Frame_Shift_Ins p.E733Dfs*53 0.16 TCGA-2Z-A9JJ-01 8 37690712 37690712 T C GPR124 Missense_Mutation p.Y428H 0.30 tolerated(0.8) benign(0.019) TCGA-2Z-A9JJ-01 9 5763690 5763690 C A KIAA1432 Missense_Mutation p.A888E 0.06 deleterious(0.02) possibly_damaging(0.591) TCGA-2Z-A9JJ-01 9 79936242 79936242 A G VPS13A Missense_Mutation p.K1858R 0.33 deleterious(0.02) benign(0.066) TCGA-2Z-A9JJ-01 X 31462641 31462641 A C DMD Missense_Mutation p.L3014R 0.48 possibly_damaging(0.883) TCGA-2Z-A9JJ-01 X 47445924 47445924 T G TIMP1 Missense_Mutation p.F153C 0.40 tolerated(0.11) possibly_damaging(0.845) TCGA-2Z-A9JK-01 10 104404444 104404444 G A TRIM8 Missense_Mutation p.E24K 0.22 deleterious(0.02) possibly_damaging(0.817) TCGA-2Z-A9JK-01 10 112579894 112579894 A C RBM20 Missense_Mutation p.E872A 0.27 tolerated(0.42) benign(0.002) TCGA-2Z-A9JK-01 10 69749982 69749982 G A HERC4 Missense_Mutation p.P540L 0.22 deleterious(0.01) possibly_damaging(0.558) TCGA-2Z-A9JK-01 10 71974287 71974287 T C PPA1 Missense_Mutation p.D118G 0.23 deleterious(0.02) possibly_damaging(0.493) TCGA-2Z-A9JK-01 10 73572275 73572275 T A CDH23 Missense_Mutation p.L900Q 0.35 deleterious(0.01) benign(0.096) TCGA-2Z-A9JK-01 10 93588096 93588096 G A TNKS2 Missense_Mutation p.R346Q 0.25 tolerated(0.06) benign(0.107) TCGA-2Z-A9JK-01 10 98715299 98715299 G C LCOR Missense_Mutation p.G308R 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-2Z-A9JK-01 11 108178695 108178695 A G ATM Missense_Mutation p.M1916V 0.08 deleterious(0) benign(0.002) TCGA-2Z-A9JK-01 11 111707006 111707006 T A ALG9 Missense_Mutation p.Q324L 0.18 deleterious(0.01) benign(0.184) TCGA-2Z-A9JK-01 11 4703309 4703309 C T OR51E2 Missense_Mutation p.M211I 0.20 tolerated(0.44) benign(0.002) TCGA-2Z-A9JK-01 11 62346467 62346467 G T TUT1 Missense_Mutation p.D280E 0.19 tolerated(0.07) probably_damaging(0.998) TCGA-2Z-A9JK-01 11 66034795 66034795 G T KLC2 3'UTR 0.24 TCGA-2Z-A9JK-01 11 66332038 66332038 A G CTSF Missense_Mutation p.Y438H 0.17 deleterious(0) probably_damaging(0.989) TCGA-2Z-A9JK-01 12 11183487 11183487 T C TAS2R31 Missense_Mutation p.K150E 0.20 tolerated(0.32) benign(0.006) TCGA-2Z-A9JK-01 12 120119241 120119241 T C PRKAB1 3'UTR 0.71 TCGA-2Z-A9JK-01 12 120934002 120934002 C T DYNLL1 Intron 0.27 TCGA-2Z-A9JK-01 12 2602503 2602503 C T CACNA1C Missense_Mutation p.T355M 0.21 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JK-01 12 49171000 49171000 C T ADCY6 Silent p.L421L 0.17 TCGA-2Z-A9JK-01 12 64825465 64825465 T A XPOT Silent p.L708L 0.24 TCGA-2Z-A9JK-01 12 6572032 6572032 G A VAMP1 3'Flank 0.24 TCGA-2Z-A9JK-01 12 69656194 69656194 A - CPSF6 Frame_Shift_Del p.K505Rfs*50 0.24 TCGA-2Z-A9JK-01 12 72335374 72335374 C G TPH2 Missense_Mutation p.P39R 0.25 tolerated(0.14) benign(0) TCGA-2Z-A9JK-01 13 33627970 33627970 A G KL Missense_Mutation p.I296V 0.22 deleterious(0.05) possibly_damaging(0.836) TCGA-2Z-A9JK-01 14 24651547 24651547 C A IPO4 Silent p.A845A 0.27 TCGA-2Z-A9JK-01 14 55836392 55836395 GAGA - ATG14 Frame_Shift_Del p.I474Tfs*7 0.33 TCGA-2Z-A9JK-01 15 75499492 75499494 CAT - C15orf39 In_Frame_Del p.P368del 0.25 TCGA-2Z-A9JK-01 15 91474322 91474322 C G HDDC3 3'UTR 0.41 TCGA-2Z-A9JK-01 16 3778974 3778974 G T CREBBP Missense_Mutation p.P2025H 0.23 unknown(0) TCGA-2Z-A9JK-01 16 71668183 71668183 G C MARVELD3 Intron 0.27 TCGA-2Z-A9JK-01 16 88787130 88787130 C A PIEZO1 Missense_Mutation p.G1899W 0.23 deleterious(0.02) benign(0.416) TCGA-2Z-A9JK-01 16 89341269 89341269 T C ANKRD11 Missense_Mutation p.T2556A 0.18 probably_damaging(0.995) TCGA-2Z-A9JK-01 17 1687738 1687738 G C SMYD4 Silent p.R634R 0.24 TCGA-2Z-A9JK-01 17 21320053 21320053 C A KCNJ12 3'UTR 0.10 TCGA-2Z-A9JK-01 17 2577395 2577395 G A PAFAH1B1 Missense_Mutation p.R238H 0.08 deleterious(0.02) possibly_damaging(0.853) TCGA-2Z-A9JK-01 17 27437065 27437065 G C MYO18A Missense_Mutation p.L1048V 0.29 tolerated(0.39) possibly_damaging(0.764) TCGA-2Z-A9JK-01 17 29631497 29631497 C A EVI2B Silent p.L377L 0.30 TCGA-2Z-A9JK-01 17 35414083 35414083 G C AATF 3'UTR 0.35 TCGA-2Z-A9JK-01 17 48452912 48452918 TCTAGCT - EME1 Frame_Shift_Del p.S115Pfs*45 0.17 TCGA-2Z-A9JK-01 17 78321044 78321044 C T RNF213 Missense_Mutation p.S2970L 0.20 probably_damaging(0.962) TCGA-2Z-A9JK-01 17 9792980 9792980 G A GLP2R Missense_Mutation p.M540I 0.42 tolerated(0.07) benign(0.001) TCGA-2Z-A9JK-01 18 60241523 60241523 G A ZCCHC2 Missense_Mutation p.V737I 0.22 tolerated(0.18) benign(0.009) TCGA-2Z-A9JK-01 18 67614032 67614032 G A CD226 Missense_Mutation p.S107F 0.24 tolerated(0.96) probably_damaging(0.914) TCGA-2Z-A9JK-01 18 74154396 74154396 G A ZNF516 Silent p.C205C 0.09 TCGA-2Z-A9JK-01 18 76753052 76753052 C T SALL3 Missense_Mutation p.A354V 0.19 tolerated(1) unknown(0) TCGA-2Z-A9JK-01 19 10531428 10531428 G T PDE4A 5'UTR 0.19 TCGA-2Z-A9JK-01 19 11833714 11833714 C A ZNF823 Missense_Mutation p.R212I 0.26 deleterious(0.04) benign(0.401) TCGA-2Z-A9JK-01 19 38852429 38852429 C A CATSPERG Missense_Mutation p.H674Q 0.21 deleterious(0) benign(0.402) TCGA-2Z-A9JK-01 19 40521590 40521590 T C ZNF546 Missense_Mutation p.Y805H 0.25 deleterious(0.03) possibly_damaging(0.604) TCGA-2Z-A9JK-01 19 43013137 43013137 G A CEACAM1 3'UTR 0.23 TCGA-2Z-A9JK-01 19 49468751 49468751 C T FTL 5'UTR 0.33 TCGA-2Z-A9JK-01 19 52941686 52941686 C T ZNF534 Missense_Mutation p.P338S 0.34 deleterious(0.02) probably_damaging(0.98) TCGA-2Z-A9JK-01 1 12030830 12030830 T G PLOD1 Missense_Mutation p.I620S 0.17 deleterious(0) benign(0.342) TCGA-2Z-A9JK-01 1 145507671 145507671 C T RBM8A Missense_Mutation p.A2V 0.25 deleterious(0.03) benign(0.067) TCGA-2Z-A9JK-01 1 16952275 16952275 C A CROCCP2 3'Flank 0.11 TCGA-2Z-A9JK-01 1 182027010 182027010 C G ZNF648 Missense_Mutation p.E46Q 0.26 tolerated_low_confidence(0.34) benign(0.001) TCGA-2Z-A9JK-01 1 186276990 186276990 T A PRG4 Silent p.A713A 0.29 TCGA-2Z-A9JK-01 1 220101416 220101416 C G SLC30A10 Missense_Mutation p.G123R 0.24 deleterious(0) probably_damaging(0.981) TCGA-2Z-A9JK-01 1 243329104 243329104 G A CEP170 Missense_Mutation p.L720F 0.19 tolerated(0.85) benign(0.001) TCGA-2Z-A9JK-01 1 29585229 29585229 G T PTPRU Missense_Mutation p.G140C 0.05 deleterious(0.02) probably_damaging(0.997) TCGA-2Z-A9JK-01 1 44447485 44447485 G T B4GALT2 Silent p.A175A 0.23 TCGA-2Z-A9JK-01 1 63096983 63096983 G T DOCK7 Missense_Mutation p.H404N 0.25 tolerated(0.29) benign(0.075) TCGA-2Z-A9JK-01 20 34091233 34091233 A T CEP250 Missense_Mutation p.K1679M 0.18 probably_damaging(0.997) TCGA-2Z-A9JK-01 20 36147656 36147656 G A BLCAP 5'UTR 0.10 TCGA-2Z-A9JK-01 20 61528138 61528138 A T DIDO1 Missense_Mutation p.L600H 0.18 possibly_damaging(0.847) TCGA-2Z-A9JK-01 20 62191860 62191860 T A HELZ2 Missense_Mutation p.K2491M 0.23 deleterious(0) probably_damaging(0.983) TCGA-2Z-A9JK-01 20 62202151 62202151 G A HELZ2 Missense_Mutation p.R117W 0.19 deleterious(0.03) benign(0) TCGA-2Z-A9JK-01 22 32352566 32352566 C T YWHAH Silent p.A176A 0.30 TCGA-2Z-A9JK-01 22 38699188 38699188 G - CSNK1E Frame_Shift_Del p.Q48Sfs*11 0.10 TCGA-2Z-A9JK-01 22 38897263 38897263 C A DDX17 Missense_Mutation p.G104C 0.25 deleterious(0.01) possibly_damaging(0.557) TCGA-2Z-A9JK-01 22 44892956 44892956 G C LDOC1L Missense_Mutation p.P161A 0.28 deleterious(0.04) possibly_damaging(0.908) TCGA-2Z-A9JK-01 22 50963969 50963969 C G SCO2 Intron 0.21 TCGA-2Z-A9JK-01 2 108998295 108998295 C T SULT1C4 Missense_Mutation p.H83Y 0.21 tolerated(1) benign(0.003) TCGA-2Z-A9JK-01 2 120281824 120281824 G A SCTR 5'UTR 0.06 TCGA-2Z-A9JK-01 2 125192134 125192134 C G CNTNAP5 Silent p.L201L 0.26 TCGA-2Z-A9JK-01 2 27324530 27324530 T G CGREF1 Missense_Mutation p.E190A 0.16 tolerated(0.13) benign(0.093) TCGA-2Z-A9JK-01 2 88926504 88926505 - T EIF2AK3 Frame_Shift_Ins p.E97Rfs*25 0.19 TCGA-2Z-A9JK-01 2 95511153 95511153 T C RNU6-1320P 3'Flank 0.25 TCGA-2Z-A9JK-01 3 11468299 11468311 GAAGGATTTAACT AAA ATG7 Frame_Shift_Del p.E660Kfs*3 0.19 TCGA-2Z-A9JK-01 3 142137718 142137718 C T XRN1 Silent p.Q393Q 0.17 TCGA-2Z-A9JK-01 3 52441229 52441230 AG - BAP1 Frame_Shift_Del p.F181* 0.23 TCGA-2Z-A9JK-01 4 100356430 100356430 C A ADH7 5'Flank 0.28 TCGA-2Z-A9JK-01 4 120221611 120221611 T G C4orf3 Missense_Mutation p.N160T 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.607) TCGA-2Z-A9JK-01 4 2176460 2176460 G A POLN Silent p.L423L 0.24 TCGA-2Z-A9JK-01 4 23886468 23886468 A G PPARGC1A Silent p.D47D 0.23 TCGA-2Z-A9JK-01 4 68699085 68699085 G C TMPRSS11D Missense_Mutation p.P177A 0.17 tolerated(0.23) benign(0.091) TCGA-2Z-A9JK-01 5 115803312 115803312 C - SEMA6A Frame_Shift_Del p.A621Qfs*13 0.08 TCGA-2Z-A9JK-01 5 122682287 122682287 G A CEP120 Missense_Mutation p.H963Y 0.20 deleterious(0.01) possibly_damaging(0.885) TCGA-2Z-A9JK-01 5 140242828 140242828 C T AC005609.1 Missense_Mutation p.A50T 0.14 tolerated_low_confidence(0.5) possibly_damaging(0.695) TCGA-2Z-A9JK-01 5 169463522 169463523 TT A DOCK2 Frame_Shift_Del p.F1210Tfs*12 0.36 TCGA-2Z-A9JK-01 5 95768715 95768715 G A PCSK1 Missense_Mutation p.T11I 0.29 tolerated(0.57) benign(0) TCGA-2Z-A9JK-01 6 149922828 149922828 T A KATNA1 Missense_Mutation p.T264S 0.25 deleterious(0) possibly_damaging(0.617) TCGA-2Z-A9JK-01 6 155572110 155572110 C A TIAM2 Missense_Mutation p.L1339M 0.31 tolerated(0.08) possibly_damaging(0.497) TCGA-2Z-A9JK-01 6 46836697 46836697 C A GPR116 Missense_Mutation p.R515I 0.23 tolerated(0.18) possibly_damaging(0.493) TCGA-2Z-A9JK-01 7 101944156 101944156 A C SH2B2 Missense_Mutation p.K151Q 0.24 tolerated(0.14) possibly_damaging(0.595) TCGA-2Z-A9JK-01 7 12254528 12254528 T G TMEM106B Missense_Mutation p.V31G 0.18 tolerated(0.41) benign(0.14) TCGA-2Z-A9JK-01 7 128394430 128394430 G T CALU Intron 0.18 TCGA-2Z-A9JK-01 7 158705727 158705727 G A WDR60 Missense_Mutation p.E548K 0.06 deleterious(0.02) possibly_damaging(0.636) TCGA-2Z-A9JK-01 7 65413712 65413713 AA - VKORC1L1 Frame_Shift_Del p.N84Pfs*131 0.20 TCGA-2Z-A9JK-01 7 73008381 73008381 A C MLXIPL Intron 0.31 TCGA-2Z-A9JK-01 8 22442384 22442384 T C PDLIM2 Missense_Mutation p.V349A 0.11 tolerated(0.13) benign(0.034) TCGA-2Z-A9JK-01 8 55538963 55538963 G A RP1 Missense_Mutation p.E841K 0.34 deleterious(0.04) benign(0.355) TCGA-2Z-A9JK-01 8 8747815 8747815 G A MFHAS1 Silent p.A918A 0.24 TCGA-2Z-A9JK-01 8 98788210 98788210 G A LAPTM4B Silent p.A82A 0.26 TCGA-2Z-A9JK-01 9 106882315 106882315 A T SMC2 Silent p.R668R 0.19 TCGA-2Z-A9JK-01 9 130511796 130511796 T C SH2D3C Missense_Mutation p.Y278C 0.33 deleterious(0) probably_damaging(0.976) TCGA-2Z-A9JK-01 9 77257561 77257561 A G RORB Missense_Mutation p.Y156C 0.25 tolerated(0.17) possibly_damaging(0.865) TCGA-2Z-A9JK-01 X 100533091 100533091 C T TAF7L Missense_Mutation p.V261M 0.21 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9JK-01 X 102979831 102979831 A G GLRA4 Missense_Mutation p.F66S 0.50 deleterious(0.04) possibly_damaging(0.906) TCGA-2Z-A9JK-01 X 129189870 129189870 T G BCORL1 Missense_Mutation p.L1632R 0.54 probably_damaging(0.98) TCGA-2Z-A9JK-01 X 153698109 153698109 C T PLXNA3 Missense_Mutation p.R1593C 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-2Z-A9JK-01 X 20043121 20043121 G T MAP7D2 Missense_Mutation p.L454M 0.11 deleterious(0.03) unknown(0) TCGA-2Z-A9JK-01 X 24006241 24006241 T - KLHL15 Frame_Shift_Del p.T538Lfs*7 0.28 TCGA-2Z-A9JK-01 X 46332769 46332769 C G KRBOX4 3'UTR 0.42 TCGA-2Z-A9JL-01 10 101379882 101379882 T A SLC25A28 Missense_Mutation p.T71S 0.35 tolerated(1) benign(0.004) TCGA-2Z-A9JL-01 10 102265129 102265129 C A SEC31B Missense_Mutation p.V390F 0.31 deleterious(0) possibly_damaging(0.482) TCGA-2Z-A9JL-01 10 121567439 121567444 TTTAGC AT INPP5F Splice_Site p.X481_splice 0.31 TCGA-2Z-A9JL-01 10 23730233 23730233 T G OTUD1 3'UTR 0.36 TCGA-2Z-A9JL-01 10 70101865 70101866 - A HNRNPH3 3'UTR 0.20 TCGA-2Z-A9JL-01 10 81850575 81850575 C T TMEM254 Missense_Mutation p.R92W 0.42 tolerated(0.14) benign(0.002) TCGA-2Z-A9JL-01 11 111229622 111229622 G A POU2AF1 Missense_Mutation p.P13L 0.25 deleterious(0.02) possibly_damaging(0.635) TCGA-2Z-A9JL-01 11 19854129 19854129 C G NAV2 Missense_Mutation p.Q123E 0.29 tolerated(1) benign(0.003) TCGA-2Z-A9JL-01 11 64702479 64702479 A G GPHA2 Missense_Mutation p.I91T 0.36 deleterious(0) possibly_damaging(0.628) TCGA-2Z-A9JL-01 11 66190646 66190646 T G NPAS4 Missense_Mutation p.Y251D 0.40 deleterious(0) probably_damaging(1) TCGA-2Z-A9JL-01 11 67186483 67186483 C G CARNS1 Silent p.A207A 0.44 TCGA-2Z-A9JL-01 11 7660962 7660962 G A PPFIBP2 Splice_Site p.X413_splice 0.38 TCGA-2Z-A9JL-01 11 993296 993296 C T AP2A2 Missense_Mutation p.P489S 0.26 tolerated(0.1) benign(0.028) TCGA-2Z-A9JL-01 12 112478370 112478370 T A NAA25 Missense_Mutation p.K818I 0.56 deleterious(0) benign(0.042) TCGA-2Z-A9JL-01 12 112499043 112499043 A G NAA25 Silent p.N433N 0.49 TCGA-2Z-A9JL-01 12 27475117 27475117 A C STK38L Missense_Mutation p.D406A 0.25 tolerated(0.46) possibly_damaging(0.458) TCGA-2Z-A9JL-01 12 31131493 31131493 T C TSPAN11 Intron 0.55 TCGA-2Z-A9JL-01 12 48536588 48536588 A T PFKM Silent p.S630S 0.56 TCGA-2Z-A9JL-01 12 52565443 52565443 G A KRT80 Silent p.T411T 0.51 TCGA-2Z-A9JL-01 12 57431392 57431392 G T MYO1A Missense_Mutation p.S665R 0.26 tolerated(0.52) benign(0.009) TCGA-2Z-A9JL-01 12 71016216 71016216 G T PTPRB Nonsense_Mutation p.S221* 0.48 TCGA-2Z-A9JL-01 13 31495803 31495803 G T MEDAG Missense_Mutation p.D203Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-2Z-A9JL-01 13 32722044 32722044 C T FRY Missense_Mutation p.P451L 0.30 deleterious(0) probably_damaging(1) TCGA-2Z-A9JL-01 13 39263022 39263022 C T FREM2 Missense_Mutation p.A514V 0.50 deleterious(0.03) benign(0.201) TCGA-2Z-A9JL-01 13 50087269 50087269 A C PHF11 Silent p.S97S 0.21 TCGA-2Z-A9JL-01 14 59006809 59006809 C A KIAA0586 Silent p.R1537R 0.40 TCGA-2Z-A9JL-01 14 71514621 71514621 C A PCNX Missense_Mutation p.L1420M 0.42 deleterious(0.01) probably_damaging(0.934) TCGA-2Z-A9JL-01 14 76156649 76156649 G C TTLL5 Missense_Mutation p.E162D 0.46 tolerated(0.07) benign(0.182) TCGA-2Z-A9JL-01 15 43023515 43023515 T C CDAN1 Missense_Mutation p.Q585R 0.41 tolerated(0.07) probably_damaging(0.946) TCGA-2Z-A9JL-01 15 62277127 62277127 T C VPS13C Silent p.P550P 0.36 TCGA-2Z-A9JL-01 15 96875803 96875803 T C NR2F2 Intron 0.47 TCGA-2Z-A9JL-01 16 1869933 1869933 G T HAGH Missense_Mutation p.L133M 0.29 deleterious(0.05) possibly_damaging(0.726) TCGA-2Z-A9JL-01 16 67320229 67320229 A T PLEKHG4 Missense_Mutation p.D832V 0.35 deleterious(0) probably_damaging(0.984) TCGA-2Z-A9JL-01 16 88017803 88017803 C T BANP Silent p.I92I 0.43 TCGA-2Z-A9JL-01 16 88499104 88499104 C - ZNF469 Frame_Shift_Del p.D1716Tfs*122 0.29 TCGA-2Z-A9JL-01 17 1564944 1564944 T G PRPF8 Missense_Mutation p.E1388A 0.34 deleterious(0) possibly_damaging(0.881) TCGA-2Z-A9JL-01 17 27033714 27033714 C T PROCA1 Intron 0.34 TCGA-2Z-A9JL-01 17 39658541 39658541 G C KRT13 Intron 0.38 TCGA-2Z-A9JL-01 17 6023951 6023951 G - WSCD1 Frame_Shift_Del p.L568Cfs*19 0.26 TCGA-2Z-A9JL-01 17 62745866 62745866 A G hsa-mir-6080 RNA 0.39 TCGA-2Z-A9JL-01 17 685194 685194 G T GLOD4 Intron 0.25 TCGA-2Z-A9JL-01 17 6945476 6945476 A G SLC16A11 Missense_Mutation p.L342P 0.30 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JL-01 17 7760532 7760532 C A LSMD1 Missense_Mutation p.L70F 0.41 deleterious_low_confidence(0.04) benign(0.077) TCGA-2Z-A9JL-01 18 28712612 28712612 T C DSC1 Silent p.T719T 0.36 TCGA-2Z-A9JL-01 19 10085009 10085009 A T COL5A3 Missense_Mutation p.F1140I 0.38 probably_damaging(0.94) TCGA-2Z-A9JL-01 19 10572554 10572554 T - PDE4A Frame_Shift_Del p.V541Gfs*10 0.24 TCGA-2Z-A9JL-01 19 10578237 10578237 G T PDE4A Silent p.G867G 0.35 TCGA-2Z-A9JL-01 19 18001737 18001737 G T SLC5A5 Missense_Mutation p.W565L 0.35 deleterious(0.04) probably_damaging(0.931) TCGA-2Z-A9JL-01 19 22941432 22941432 A C ZNF99 Missense_Mutation p.C427G 0.45 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JL-01 19 37038656 37038656 T G ZNF529 Missense_Mutation p.K268N 0.43 tolerated(0.47) benign(0) TCGA-2Z-A9JL-01 19 39233092 39233092 T A CAPN12 Silent p.G128G 0.37 TCGA-2Z-A9JL-01 19 4538577 4538577 G C LRG1 Missense_Mutation p.A140G 0.42 tolerated(0.19) probably_damaging(0.929) TCGA-2Z-A9JL-01 19 52714553 52714553 T G PPP2R1A Missense_Mutation p.V104G 0.46 deleterious(0) probably_damaging(0.972) TCGA-2Z-A9JL-01 19 54667538 54667538 A C TMC4 Missense_Mutation p.F405V 0.36 deleterious(0.04) benign(0.007) TCGA-2Z-A9JL-01 19 55903186 55903186 T A RPL28 3'Flank 0.27 TCGA-2Z-A9JL-01 1 113933805 113933805 G C MAGI3 Missense_Mutation p.E50D 0.37 tolerated(0.48) benign(0.005) TCGA-2Z-A9JL-01 1 116228127 116228127 C T VANGL1 Silent p.I431I 0.31 TCGA-2Z-A9JL-01 1 156444934 156444934 G A MEF2D Silent p.L324L 0.40 TCGA-2Z-A9JL-01 1 160063548 160063548 T G IGSF8 Missense_Mutation p.I286L 0.36 deleterious(0.01) benign(0.028) TCGA-2Z-A9JL-01 1 161180681 161180681 T G NDUFS2 Intron 0.40 TCGA-2Z-A9JL-01 1 162551113 162551113 A G UAP1 Missense_Mutation p.Q233R 0.38 tolerated(0.45) benign(0.068) TCGA-2Z-A9JL-01 1 17083482 17083482 T C MST1L RNA 0.09 TCGA-2Z-A9JL-01 1 183775571 183775571 A G RGL1 Silent p.K65K 0.37 TCGA-2Z-A9JL-01 1 202850070 202850070 A T RABIF 3'UTR 0.48 TCGA-2Z-A9JL-01 1 24782759 24782759 G A NIPAL3 Missense_Mutation p.A257T 0.39 tolerated(0.05) probably_damaging(0.965) TCGA-2Z-A9JL-01 1 26107539 26107539 A G MAN1C1 Missense_Mutation p.Y529C 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-2Z-A9JL-01 1 28661029 28661029 C A MED18 Missense_Mutation p.L59I 0.32 tolerated(0.48) benign(0.012) TCGA-2Z-A9JL-01 1 6640799 6640799 C T ZBTB48 Missense_Mutation p.L44F 0.45 deleterious(0) probably_damaging(1) TCGA-2Z-A9JL-01 1 67878845 67878845 A G SERBP1 3'UTR 0.41 TCGA-2Z-A9JL-01 20 16486456 16486456 T A KIF16B Missense_Mutation p.K304M 0.39 deleterious(0) probably_damaging(1) TCGA-2Z-A9JL-01 20 31812229 31812229 C T BPIFA3 Missense_Mutation p.S116L 0.05 tolerated(0.36) benign(0.08) TCGA-2Z-A9JL-01 20 3766089 3766089 C T CENPB Missense_Mutation p.A348T 0.38 tolerated(0.33) unknown(0) TCGA-2Z-A9JL-01 20 48260082 48260082 T G B4GALT5 Missense_Mutation p.D157A 0.31 deleterious(0) probably_damaging(1) TCGA-2Z-A9JL-01 20 62190711 62190711 A G HELZ2 Missense_Mutation p.L2613P 0.47 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JL-01 21 44324023 44324023 G T NDUFV3 Missense_Mutation p.A301S 0.33 tolerated(0.1) benign(0.019) TCGA-2Z-A9JL-01 21 45773684 45773684 G A TRPM2 Missense_Mutation p.R34Q 0.41 tolerated_low_confidence(0.45) benign(0.003) TCGA-2Z-A9JL-01 21 46226870 46226870 A C SUMO3 Missense_Mutation p.F103C 0.43 deleterious_low_confidence(0) benign(0.06) TCGA-2Z-A9JL-01 22 23465473 23465473 T C GNAZ Missense_Mutation p.F308S 0.44 deleterious(0) probably_damaging(0.983) TCGA-2Z-A9JL-01 22 36140002 36140002 A - RBFOX2 3'Flank 0.33 TCGA-2Z-A9JL-01 22 40521834 40521834 G T TNRC6B Nonsense_Mutation p.E5* 0.35 TCGA-2Z-A9JL-01 22 46658026 46658026 G T PKDREJ Silent p.V398V 0.47 TCGA-2Z-A9JL-01 22 50528560 50528560 A T MOV10L1 Missense_Mutation p.T15S 0.19 tolerated(0.08) benign(0.007) TCGA-2Z-A9JL-01 2 10584694 10584694 C G ODC1 Missense_Mutation p.R61P 0.32 tolerated(0.06) probably_damaging(0.986) TCGA-2Z-A9JL-01 2 131524286 131524286 A C AMER3 3'UTR 0.33 TCGA-2Z-A9JL-01 2 1507790 1507790 C T TPO Silent p.G819G 0.18 TCGA-2Z-A9JL-01 2 166810284 166810284 T A TTC21B 5'UTR 0.37 TCGA-2Z-A9JL-01 2 176987907 176987907 A G HOXD9 Silent p.G137G 0.32 TCGA-2Z-A9JL-01 2 202507331 202507331 C G TMEM237 Intron 0.32 TCGA-2Z-A9JL-01 2 234621902 234621902 T A UGT1A5 Missense_Mutation p.F89I 0.46 tolerated(0.24) benign(0.278) TCGA-2Z-A9JL-01 2 24283781 24283782 AG - FKBP1B Frame_Shift_Del p.E62Gfs*18 0.22 TCGA-2Z-A9JL-01 2 61415653 61415653 T A USP34 Missense_Mutation p.N3409Y 0.32 deleterious_low_confidence(0.02) benign(0.024) TCGA-2Z-A9JL-01 2 97881176 97881176 G C ANKRD36 Missense_Mutation p.K1205N 0.22 deleterious(0.04) possibly_damaging(0.688) TCGA-2Z-A9JL-01 3 10183452 10183453 GA - VHL 5'UTR 0.29 TCGA-2Z-A9JL-01 3 113115478 113115478 C T WDR52 Missense_Mutation p.G556R 0.43 tolerated(0.06) probably_damaging(0.961) TCGA-2Z-A9JL-01 3 119305359 119305359 G A ADPRH Missense_Mutation p.A176T 0.41 deleterious(0) probably_damaging(0.977) TCGA-2Z-A9JL-01 3 129152076 129152076 G T MBD4 Missense_Mutation p.P476T 0.38 deleterious(0) probably_damaging(0.976) TCGA-2Z-A9JL-01 3 42240711 42240711 C T TRAK1 Silent p.L386L 0.39 TCGA-2Z-A9JL-01 3 47163553 47163553 C G SETD2 Missense_Mutation p.S858T 0.35 tolerated_low_confidence(0.56) benign(0.003) TCGA-2Z-A9JL-01 3 51971589 51971589 C G RRP9 Missense_Mutation p.G121A 0.39 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JL-01 3 58179059 58179059 G T DNASE1L3 Intron 0.07 TCGA-2Z-A9JL-01 4 15987392 15987392 G T PROM1 Silent p.I757I 0.33 TCGA-2Z-A9JL-01 4 2956275 2956275 G T NOP14 Missense_Mutation p.A163D 0.33 deleterious(0) possibly_damaging(0.616) TCGA-2Z-A9JL-01 4 52904414 52904414 C T SGCB Silent p.A4A 0.05 TCGA-2Z-A9JL-01 5 102537600 102537600 T C PPIP5K2 3'UTR 0.42 TCGA-2Z-A9JL-01 5 140573697 140573697 G C PCDHB10 Silent p.L524L 0.33 TCGA-2Z-A9JL-01 5 140810981 140810981 G C PCDHGA12 Missense_Mutation p.D219H 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.789) TCGA-2Z-A9JL-01 5 180326192 180326192 G T BTNL8 5'UTR 0.48 TCGA-2Z-A9JL-01 5 68661336 68661336 A G TAF9 Missense_Mutation p.C77R 0.38 tolerated(0.35) possibly_damaging(0.449) TCGA-2Z-A9JL-01 5 72469063 72469063 A G TMEM174 5'UTR 0.38 TCGA-2Z-A9JL-01 6 118791766 118791766 T C CEP85L Silent p.Q655Q 0.05 TCGA-2Z-A9JL-01 6 131958481 131958481 A G ENPP3 5'UTR 0.46 TCGA-2Z-A9JL-01 6 160526120 160526120 C G IGF2R 3'UTR 0.38 TCGA-2Z-A9JL-01 6 88229389 88229389 C T RARS2 Missense_Mutation p.M383I 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-2Z-A9JL-01 7 104753897 104753897 T C KMT2E 3'UTR 0.33 TCGA-2Z-A9JL-01 7 148947362 148947362 C A ZNF212 Missense_Mutation p.A46D 0.50 deleterious(0) probably_damaging(0.979) TCGA-2Z-A9JL-01 7 150029354 150029354 G A ZBED6CL 3'UTR 0.24 TCGA-2Z-A9JL-01 7 36366330 36366330 G T KIAA0895 3'UTR 0.05 TCGA-2Z-A9JL-01 7 4827394 4827394 G T AP5Z1 Missense_Mutation p.D481Y 0.25 tolerated(0.08) benign(0.047) TCGA-2Z-A9JL-01 7 7646738 7646738 A C MIOS 3'UTR 0.72 TCGA-2Z-A9JL-01 7 82584780 82584780 A G PCLO Missense_Mutation p.L1830P 0.35 unknown(0) TCGA-2Z-A9JL-01 8 113303751 113303751 G T CSMD3 Missense_Mutation p.P2988T 0.28 deleterious(0) probably_damaging(0.996) TCGA-2Z-A9JL-01 8 142486101 142486101 A C MROH5 Intron 0.41 TCGA-2Z-A9JL-01 9 114538143 114538143 T C C9orf84 Missense_Mutation p.M60V 0.39 tolerated(0.17) benign(0.018) TCGA-2Z-A9JL-01 9 116345868 116345868 A G RGS3 Missense_Mutation p.K726E 0.35 tolerated_low_confidence(0.13) benign(0.006) TCGA-2Z-A9JL-01 9 137323760 137323760 G T RXRA Silent p.T351T 0.27 TCGA-2Z-A9JL-01 X 119504978 119504978 T C ATP1B4 Missense_Mutation p.F159L 0.89 tolerated(0.64) possibly_damaging(0.674) TCGA-2Z-A9JL-01 X 62570711 62570711 A G SPIN4 5'UTR 0.80 TCGA-2Z-A9JM-01 10 103900243 103900243 C T PPRC1 Missense_Mutation p.P660S 0.42 tolerated_low_confidence(0.5) benign(0.007) TCGA-2Z-A9JM-01 10 52003053 52003053 C T ASAH2 Missense_Mutation p.R140H 0.34 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JM-01 11 61724395 61724396 - T BEST1 Frame_Shift_Ins p.A129Cfs*43 0.21 TCGA-2Z-A9JM-01 11 64940189 64940189 C A SPDYC Missense_Mutation p.T184N 0.32 tolerated(0.06) probably_damaging(0.978) TCGA-2Z-A9JM-01 11 66472844 66472844 C T SPTBN2 Missense_Mutation p.A635T 0.35 tolerated(0.09) benign(0.098) TCGA-2Z-A9JM-01 12 112654883 112654883 C T HECTD4 Silent p.L2251L 0.42 TCGA-2Z-A9JM-01 12 2907930 2907930 T C FKBP4 Missense_Mutation p.I151T 0.25 tolerated(0.06) benign(0.296) TCGA-2Z-A9JM-01 12 47471993 47471993 C G AMIGO2 Missense_Mutation p.D265H 0.26 tolerated(0.14) benign(0.399) TCGA-2Z-A9JM-01 12 80214604 80214604 C T PPP1R12A Missense_Mutation p.C355Y 0.24 deleterious(0.03) probably_damaging(0.996) TCGA-2Z-A9JM-01 13 48986185 48986185 C G LPAR6 Missense_Mutation p.K125N 0.37 deleterious(0) possibly_damaging(0.574) TCGA-2Z-A9JM-01 14 23239716 23239716 A T OXA1L Missense_Mutation p.N299I 0.36 deleterious(0.01) benign(0.138) TCGA-2Z-A9JM-01 14 69792741 69792741 G A GALNT16 Missense_Mutation p.E189K 0.25 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JM-01 14 74762670 74762670 G A ABCD4 Silent p.L185L 0.23 TCGA-2Z-A9JM-01 14 91389482 91389482 C T RPS6KA5 Missense_Mutation p.R226K 0.31 tolerated(0.38) benign(0.002) TCGA-2Z-A9JM-01 14 91633812 91633812 G A C14orf159 Intron 0.50 TCGA-2Z-A9JM-01 15 101098913 101098913 G A RNU6-181P 3'Flank 0.22 TCGA-2Z-A9JM-01 15 31253167 31253167 C G MTMR10 Silent p.S225S 0.21 TCGA-2Z-A9JM-01 15 56142779 56142779 C T NEDD4 Silent p.R783R 0.39 TCGA-2Z-A9JM-01 15 72533806 72533806 T G PARP6 Missense_Mutation p.Y628S 0.29 tolerated_low_confidence(0.43) benign(0.025) TCGA-2Z-A9JM-01 16 1268646 1268646 C T CACNA1H Missense_Mutation p.P1961L 0.26 tolerated(0.06) benign(0) TCGA-2Z-A9JM-01 16 57397583 57397583 G A CCL22 3'UTR 0.32 TCGA-2Z-A9JM-01 16 75263502 75263502 A T BCAR1 Silent p.P886P 0.39 TCGA-2Z-A9JM-01 17 27234650 27234650 A T PHF12 Nonsense_Mutation p.C833* 0.21 TCGA-2Z-A9JM-01 17 48703733 48703733 A G CACNA1G Missense_Mutation p.Q2252R 0.24 tolerated(0.1) benign(0.004) TCGA-2Z-A9JM-01 17 56332255 56332255 C - LPO Frame_Shift_Del p.L397* 0.28 TCGA-2Z-A9JM-01 17 65362689 65362689 C A PSMD12 5'UTR 0.22 TCGA-2Z-A9JM-01 18 11852058 11852058 C A CHMP1B Missense_Mutation p.A183E 0.27 tolerated(0.8) benign(0.001) TCGA-2Z-A9JM-01 18 22017985 22017985 A G IMPACT Silent p.K116K 0.27 TCGA-2Z-A9JM-01 19 12816354 12816354 G T TNPO2 Silent p.V605V 0.35 TCGA-2Z-A9JM-01 19 39663570 39663570 G C PAK4 Missense_Mutation p.G73R 0.36 deleterious(0) probably_damaging(0.997) TCGA-2Z-A9JM-01 19 42463044 42463044 C T RABAC1 Missense_Mutation p.R38H 0.34 tolerated(0.08) benign(0.071) TCGA-2Z-A9JM-01 19 44635280 44635280 A - ZNF225 Frame_Shift_Del p.R172Efs*86 0.10 TCGA-2Z-A9JM-01 19 52448006 52448006 C T ZNF613 Silent p.C290C 0.13 TCGA-2Z-A9JM-01 1 116206833 116206833 G T VANGL1 Silent p.L252L 0.09 TCGA-2Z-A9JM-01 1 1163850 1163850 G T SDF4 Silent p.S108S 0.28 TCGA-2Z-A9JM-01 1 150241305 150241306 - C APH1A 5'UTR 0.24 TCGA-2Z-A9JM-01 1 152659505 152659505 C T LCE2B Silent p.G62G 0.37 TCGA-2Z-A9JM-01 1 156696807 156696807 T C ISG20L2 Missense_Mutation p.D213G 0.30 deleterious(0) probably_damaging(0.99) TCGA-2Z-A9JM-01 1 156696838 156696838 T C ISG20L2 Missense_Mutation p.I203V 0.29 tolerated(0.31) probably_damaging(0.991) TCGA-2Z-A9JM-01 1 183520232 183520232 C T SMG7 Silent p.S1073S 0.25 TCGA-2Z-A9JM-01 1 244615003 244615003 G A ADSS Silent p.G39G 0.32 TCGA-2Z-A9JM-01 1 47014904 47014904 G T KNCN Missense_Mutation p.H63N 0.32 tolerated_low_confidence(0.23) benign(0.005) TCGA-2Z-A9JM-01 1 47014905 47014905 G C KNCN Missense_Mutation p.D62E 0.31 tolerated_low_confidence(0.09) benign(0.015) TCGA-2Z-A9JM-01 1 95323000 95323000 C A SLC44A3 Silent p.I394I 0.28 TCGA-2Z-A9JM-01 20 20243776 20243776 T A C20orf26 Splice_Site p.X835_splice 0.17 TCGA-2Z-A9JM-01 20 44588028 44588028 G T ZNF335 Missense_Mutation p.H689N 0.31 deleterious(0) probably_damaging(0.996) TCGA-2Z-A9JM-01 20 62331971 62331971 G C ARFRP1 Silent p.A167A 0.25 TCGA-2Z-A9JM-01 21 40670384 40670384 C A BRWD1 Missense_Mutation p.R108M 0.46 deleterious(0) probably_damaging(0.982) TCGA-2Z-A9JM-01 22 18022640 18022640 C - CECR2 Frame_Shift_Del p.P916Lfs*83 0.22 TCGA-2Z-A9JM-01 22 29445610 29445610 G A ZNRF3 Missense_Mutation p.E481K 0.24 deleterious(0.05) possibly_damaging(0.546) TCGA-2Z-A9JM-01 22 37771601 37771601 G A ELFN2 5'UTR 0.27 TCGA-2Z-A9JM-01 2 180842978 180842978 T G CWC22 Missense_Mutation p.N174H 0.36 deleterious(0) probably_damaging(0.997) TCGA-2Z-A9JM-01 2 191797583 191797583 A G GLS Intron 0.41 TCGA-2Z-A9JM-01 2 39050399 39050399 T C DHX57 Silent p.L1009L 0.36 TCGA-2Z-A9JM-01 2 43519255 43519255 G C THADA Missense_Mutation p.A1642G 0.34 tolerated(0.13) benign(0.392) TCGA-2Z-A9JM-01 3 114026767 114026767 T G TIGIT Missense_Mutation p.V175G 0.25 tolerated(0.17) benign(0.004) TCGA-2Z-A9JM-01 3 119222809 119222809 A G TIMMDC1 Missense_Mutation p.N153S 0.22 tolerated(1) benign(0.01) TCGA-2Z-A9JM-01 3 125854448 125854448 C T ALDH1L1 Missense_Mutation p.A478T 0.32 deleterious(0) possibly_damaging(0.72) TCGA-2Z-A9JM-01 3 9974800 9974800 G C IL17RC Missense_Mutation p.W633C 0.28 deleterious(0) probably_damaging(1) TCGA-2Z-A9JM-01 4 40800801 40800801 T G NSUN7 Intron 0.38 TCGA-2Z-A9JM-01 4 74459297 74459297 T A RASSF6 Missense_Mutation p.K85I 0.29 deleterious(0.01) benign(0.288) TCGA-2Z-A9JM-01 5 13894791 13894791 T A DNAH5 Missense_Mutation p.E800V 0.25 possibly_damaging(0.727) TCGA-2Z-A9JM-01 5 140532770 140532770 T A PCDHB6 3'UTR 0.36 TCGA-2Z-A9JM-01 5 140532830 140532830 A T PCDHB6 3'UTR 0.34 TCGA-2Z-A9JM-01 5 5469021 5469021 A G KIAA0947 Missense_Mutation p.K2048E 0.31 tolerated(0.06) benign(0.076) TCGA-2Z-A9JM-01 6 41470247 41470247 C T RP11-328M4.3 RNA 0.28 TCGA-2Z-A9JM-01 6 44320474 44320474 A G SPATS1 Missense_Mutation p.S51G 0.31 tolerated_low_confidence(0.48) benign(0.002) TCGA-2Z-A9JM-01 6 52109239 52109239 G T IL17F 5'UTR 0.05 TCGA-2Z-A9JM-01 6 74502420 74502421 - AC CD109 Frame_Shift_Ins p.M926Tfs*2 0.24 TCGA-2Z-A9JM-01 6 88187175 88187175 G T SLC35A1 Missense_Mutation p.D38Y 0.46 deleterious(0.01) benign(0.195) TCGA-2Z-A9JM-01 7 107823350 107823350 G A NRCAM Silent p.F773F 0.26 TCGA-2Z-A9JM-01 7 110763543 110763543 G T LRRN3 Nonsense_Mutation p.E239* 0.18 TCGA-2Z-A9JM-01 7 137075922 137075922 G T DGKI 3'UTR 0.40 TCGA-2Z-A9JM-01 7 90896871 90896871 T C FZD1 3'UTR 0.38 TCGA-2Z-A9JM-01 8 28331306 28331306 C T FBXO16 Missense_Mutation p.A40T 0.31 tolerated(0.54) benign(0.045) TCGA-2Z-A9JM-01 8 7721162 7721162 C T SPAG11A 3'UTR 0.12 TCGA-2Z-A9JM-01 9 34662362 34662362 G A CCL27 Missense_Mutation p.P41L 0.32 tolerated(0.13) possibly_damaging(0.864) TCGA-2Z-A9JM-01 X 70472532 70472532 T C ZMYM3 Missense_Mutation p.S192G 0.65 tolerated_low_confidence(0.17) benign(0.107) TCGA-2Z-A9JM-01 X 71792527 71792527 C G HDAC8 Missense_Mutation p.D29H 0.56 deleterious(0.01) probably_damaging(0.975) TCGA-2Z-A9JN-01 10 103565799 103565800 - A MGEA5 Intron 0.24 TCGA-2Z-A9JN-01 11 102567146 102567146 G A MMP27 Silent p.D286D 0.07 TCGA-2Z-A9JN-01 11 130781599 130781599 C T SNX19 Missense_Mutation p.R581H 0.30 deleterious(0.02) possibly_damaging(0.638) TCGA-2Z-A9JN-01 12 116418571 116418571 G A MED13L Missense_Mutation p.T1783I 0.06 tolerated(0.47) benign(0.111) TCGA-2Z-A9JN-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.35 deleterious(0) possibly_damaging(0.479) TCGA-2Z-A9JN-01 12 71155255 71155255 G A PTPRR Missense_Mutation p.P208L 0.35 deleterious(0) benign(0.125) TCGA-2Z-A9JN-01 13 31722181 31722181 A - HSPH1 Frame_Shift_Del p.L432Sfs*4 0.13 TCGA-2Z-A9JN-01 15 65621833 65621833 T G IGDCC3 Silent p.G700G 0.37 TCGA-2Z-A9JN-01 16 4498749 4498752 CAGA - DNAJA3 Frame_Shift_Del p.D383Rfs*33 0.15 TCGA-2Z-A9JN-01 16 61687964 61687964 C A CDH8 Nonsense_Mutation p.E650* 0.07 TCGA-2Z-A9JN-01 19 30935837 30935837 C T ZNF536 Silent p.G456G 0.16 TCGA-2Z-A9JN-01 19 38597223 38597223 C T SIPA1L3 Silent p.Y692Y 0.42 TCGA-2Z-A9JN-01 1 158226807 158226807 G A CD1A Missense_Mutation p.R279Q 0.11 tolerated(0.07) probably_damaging(0.998) TCGA-2Z-A9JN-01 1 19181460 19181460 G A TAS1R2 Silent p.S168S 0.23 TCGA-2Z-A9JN-01 20 34022979 34022979 T C GDF5OS 3'UTR 0.12 TCGA-2Z-A9JN-01 2 55459838 55459838 A G RPS27A 5'UTR 0.21 TCGA-2Z-A9JN-01 5 134010440 134010440 C G SEC24A Missense_Mutation p.P318R 0.13 deleterious(0.01) benign(0.001) TCGA-2Z-A9JN-01 6 38818151 38818151 T C DNAH8 Missense_Mutation p.L1558S 0.32 probably_damaging(0.997) TCGA-2Z-A9JN-01 6 43422491 43422491 G A DLK2 Nonsense_Mutation p.R25* 0.10 TCGA-2Z-A9JN-01 7 128492929 128492929 C T FLNC Missense_Mutation p.R2018C 0.12 deleterious(0.02) possibly_damaging(0.88) TCGA-2Z-A9JN-01 7 130295870 130295870 T C COPG2 Missense_Mutation p.M231V 0.05 deleterious(0.03) benign(0.042) TCGA-2Z-A9JN-01 7 48278921 48278921 C T ABCA13 Silent p.H327H 0.09 TCGA-2Z-A9JN-01 7 5569022 5569022 C T ACTB Missense_Mutation p.V45M 0.15 deleterious_low_confidence(0.04) benign(0.39) TCGA-2Z-A9JN-01 8 134251258 134251258 T G NDRG1 Missense_Mutation p.T350P 0.40 tolerated(0.29) benign(0) TCGA-2Z-A9JN-01 8 73850389 73850389 G T KCNB2 3'UTR 0.07 TCGA-2Z-A9JN-01 8 8998922 8998922 C T PPP1R3B Silent p.S80S 0.10 TCGA-2Z-A9JN-01 9 131832229 131832229 C G FAM73B Silent p.V520V 0.20 TCGA-2Z-A9JN-01 9 140508149 140508149 C G ARRDC1 Silent p.S121S 0.31 TCGA-2Z-A9JN-01 9 67793740 67793740 G A FAM27B Intron 0.21 TCGA-2Z-A9JO-01 10 115922396 115922396 T C C10orf118 Missense_Mutation p.K211R 0.38 tolerated(0.53) benign(0.011) TCGA-2Z-A9JO-01 10 126523448 126523448 C G FAM175B Missense_Mutation p.P386A 0.34 tolerated_low_confidence(0.07) benign(0.055) TCGA-2Z-A9JO-01 10 127782557 127782557 G T ADAM12 Missense_Mutation p.T384N 0.08 deleterious(0) probably_damaging(0.976) TCGA-2Z-A9JO-01 10 18550223 18550223 C T CACNB2 Intron 0.21 TCGA-2Z-A9JO-01 11 108043763 108043763 C T NPAT Missense_Mutation p.E650K 0.27 tolerated(0.4) benign(0.05) TCGA-2Z-A9JO-01 11 6236092 6236092 G A FAM160A2 Silent p.N769N 0.33 TCGA-2Z-A9JO-01 11 85429943 85429943 C A SYTL2 Intron 0.37 TCGA-2Z-A9JO-01 12 47629401 47629401 G T PCED1B Missense_Mutation p.K185N 0.35 tolerated(0.55) benign(0.001) TCGA-2Z-A9JO-01 12 56415080 56415080 A T IKZF4 Intron 0.15 TCGA-2Z-A9JO-01 12 93171433 93171433 A G EEA1 Silent p.L1300L 0.23 TCGA-2Z-A9JO-01 13 115090966 115090966 T C CHAMP1 Missense_Mutation p.L550P 0.05 deleterious(0.01) probably_damaging(1) TCGA-2Z-A9JO-01 14 100996384 100996384 T G WDR25 3'UTR 0.31 TCGA-2Z-A9JO-01 14 36097127 36097127 G A RALGAPA1 Missense_Mutation p.S1503F 0.44 deleterious(0) probably_damaging(0.929) TCGA-2Z-A9JO-01 14 39736602 39736602 C A CTAGE5 5'UTR 0.26 TCGA-2Z-A9JO-01 14 63842804 63842804 G A PPP2R5E Missense_Mutation p.R443C 0.30 deleterious(0) benign(0.261) TCGA-2Z-A9JO-01 15 91500569 91500569 T A RCCD1 Silent p.A131A 0.34 TCGA-2Z-A9JO-01 16 1271747 1271747 A - TPSG1 3'UTR 0.20 TCGA-2Z-A9JO-01 16 20371931 20371931 G A PDILT Silent p.L489L 0.21 TCGA-2Z-A9JO-01 16 66547633 66547633 C G TK2 Splice_Site p.X233_splice 0.35 TCGA-2Z-A9JO-01 16 69117519 69117519 G A TANGO6 Silent p.L1080L 0.06 TCGA-2Z-A9JO-01 17 27005195 27005195 A C SUPT6H Silent p.R367R 0.31 TCGA-2Z-A9JO-01 17 27591409 27591409 G A NUFIP2 3'UTR 0.21 TCGA-2Z-A9JO-01 17 55183561 55183561 G C AKAP1 Missense_Mutation p.G246R 0.31 tolerated(0.36) benign(0.01) TCGA-2Z-A9JO-01 17 70117912 70117912 A G SOX9 Missense_Mutation p.Y127C 0.35 deleterious(0) possibly_damaging(0.873) TCGA-2Z-A9JO-01 19 35631004 35631004 C G FXYD1 Missense_Mutation p.I7M 0.31 deleterious(0.03) benign(0.325) TCGA-2Z-A9JO-01 19 50099666 50099666 A C PRR12 Missense_Mutation p.K692Q 0.29 possibly_damaging(0.607) TCGA-2Z-A9JO-01 19 50473131 50473131 G C SIGLEC16 RNA 0.47 TCGA-2Z-A9JO-01 19 57646984 57646984 G T ZIM3 Missense_Mutation p.H241N 0.31 deleterious(0) probably_damaging(0.989) TCGA-2Z-A9JO-01 19 58153538 58153538 G A ZNF211 Missense_Mutation p.E627K 0.37 deleterious(0.04) probably_damaging(0.984) TCGA-2Z-A9JO-01 1 171162500 171162500 T C FMO2 Silent p.S53S 0.39 TCGA-2Z-A9JO-01 1 20233044 20233044 G A OTUD3 Missense_Mutation p.E319K 0.07 tolerated(0.13) benign(0.009) TCGA-2Z-A9JO-01 1 62253584 62253584 C G INADL Silent p.P336P 0.24 TCGA-2Z-A9JO-01 1 63294738 63294738 A G ATG4C Missense_Mutation p.Q275R 0.27 tolerated(0.83) possibly_damaging(0.505) TCGA-2Z-A9JO-01 22 24942883 24942883 A T GUCD1 Missense_Mutation p.C129S 0.24 tolerated(0.5) benign(0.065) TCGA-2Z-A9JO-01 2 128390900 128390900 A - MYO7B Frame_Shift_Del p.I1799Sfs*65 0.18 TCGA-2Z-A9JO-01 2 152410531 152410531 G T NEB Nonsense_Mutation p.Y6479* 0.06 TCGA-2Z-A9JO-01 2 202483729 202483729 T - ALS2CR11 Frame_Shift_Del p.H42Pfs*14 0.23 TCGA-2Z-A9JO-01 2 27247068 27247072 CAACC - MAPRE3 Frame_Shift_Del p.N125Sfs*14 0.29 TCGA-2Z-A9JO-01 2 46739166 46739177 AGGCTTATATAA - ATP6V1E2 Missense_Mutation 0.23 TCGA-2Z-A9JO-01 2 98354318 98354318 C T ZAP70 Silent p.V527V 0.36 TCGA-2Z-A9JO-01 4 151504118 151504118 G A MAB21L2 5'UTR 0.26 TCGA-2Z-A9JO-01 4 16002183 16002183 A T PROM1 Missense_Mutation p.F505Y 0.34 deleterious(0) probably_damaging(1) TCGA-2Z-A9JO-01 4 70897819 70897819 T G HTN3 Missense_Mutation p.F33V 0.03 tolerated_low_confidence(0.05) benign(0.005) TCGA-2Z-A9JO-01 5 37170251 37170251 A C C5orf42 Missense_Mutation p.F2118L 0.31 tolerated(0.54) benign(0.013) TCGA-2Z-A9JO-01 6 53784349 53784349 T A LRRC1 Missense_Mutation p.L387Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JO-01 6 56481928 56481928 C T DST Intron 0.05 TCGA-2Z-A9JO-01 7 24690128 24690128 A G MPP6 Missense_Mutation p.N150D 0.36 tolerated(0.15) benign(0.013) TCGA-2Z-A9JO-01 7 45148711 45148711 T C TBRG4 Silent p.S42S 0.22 TCGA-2Z-A9JO-01 8 17611702 17611702 C T MTUS1 Missense_Mutation p.A539T 0.43 tolerated(0.14) benign(0.03) TCGA-2Z-A9JO-01 8 38187388 38187388 T A WHSC1L1 Missense_Mutation p.R363S 0.25 deleterious(0.04) probably_damaging(0.96) TCGA-2Z-A9JO-01 8 41583374 41583374 G A ANK1 Missense_Mutation p.R206C 0.36 deleterious(0) probably_damaging(1) TCGA-2Z-A9JO-01 X 100881371 100881371 G T ARMCX3 3'UTR 0.31 TCGA-2Z-A9JO-01 X 15596288 15596288 G A ACE2 Silent p.I407I 0.34 TCGA-2Z-A9JO-01 X 37431495 37431495 C T LANCL3 Silent p.G124G 0.29 TCGA-2Z-A9JP-01 10 129910660 129910660 A G MKI67 Missense_Mutation p.V569A 0.41 deleterious(0.04) benign(0.004) TCGA-2Z-A9JP-01 10 31138190 31138190 T C ZNF438 Missense_Mutation p.R382G 0.44 deleterious(0.02) possibly_damaging(0.905) TCGA-2Z-A9JP-01 10 56423964 56423964 A T PCDH15 Missense_Mutation p.L20H 0.36 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-2Z-A9JP-01 10 8111467 8111467 C A GATA3 Missense_Mutation p.A319E 0.36 deleterious(0) probably_damaging(0.971) TCGA-2Z-A9JP-01 11 102649966 102649966 T C MMP10 Missense_Mutation p.I158M 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-2Z-A9JP-01 11 120745851 120745851 G A GRIK4 Missense_Mutation p.E355K 0.32 deleterious(0.02) benign(0.007) TCGA-2Z-A9JP-01 11 19854102 19854102 G T NAV2 Missense_Mutation p.D114Y 0.09 deleterious(0) probably_damaging(1) TCGA-2Z-A9JP-01 11 58345551 58345551 T C LPXN 5'UTR 0.34 TCGA-2Z-A9JP-01 11 64110796 64110797 - GGCAT CCDC88B Frame_Shift_Ins 0.19 TCGA-2Z-A9JP-01 11 7083573 7083573 C A NLRP14 Silent p.G938G 0.40 TCGA-2Z-A9JP-01 11 71716361 71716361 T C NUMA1 Missense_Mutation p.D1916G 0.47 probably_damaging(0.999) TCGA-2Z-A9JP-01 11 793537 793540 AGAG - SLC25A22 Frame_Shift_Del p.S95Rfs*6 0.26 TCGA-2Z-A9JP-01 11 85373132 85373132 T C CREBZF 3'UTR 0.35 TCGA-2Z-A9JP-01 12 106633493 106633493 A C CKAP4 Missense_Mutation p.L373R 0.28 deleterious(0.04) probably_damaging(1) TCGA-2Z-A9JP-01 12 132445961 132445961 C T EP400 Missense_Mutation p.P266L 0.38 unknown(0) TCGA-2Z-A9JP-01 12 2929937 2929937 G A ITFG2 Silent p.L198L 0.37 TCGA-2Z-A9JP-01 12 56718077 56718077 C T PAN2 Splice_Site p.X643_splice 0.44 TCGA-2Z-A9JP-01 12 57548344 57548344 G A LRP1 Missense_Mutation p.D363N 0.31 probably_damaging(0.91) TCGA-2Z-A9JP-01 12 57858618 57858618 G A GLI1 Missense_Mutation p.G119D 0.44 deleterious(0) probably_damaging(1) TCGA-2Z-A9JP-01 12 9161629 9161629 C G KLRG1 Missense_Mutation p.S139C 0.44 tolerated(0.05) possibly_damaging(0.753) TCGA-2Z-A9JP-01 12 95922715 95922715 C T USP44 Missense_Mutation p.E498K 0.42 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JP-01 12 95922716 95922716 C A USP44 Missense_Mutation p.L497F 0.42 deleterious(0) probably_damaging(1) TCGA-2Z-A9JP-01 13 25033245 25033245 C G PARP4 Missense_Mutation p.M787I 0.38 deleterious(0.05) benign(0.002) TCGA-2Z-A9JP-01 13 31338263 31338263 T C ALOX5AP 3'UTR 0.29 TCGA-2Z-A9JP-01 14 104618786 104618786 G A KIF26A Silent p.P241P 0.32 TCGA-2Z-A9JP-01 14 69697226 69697226 C A EXD2 Missense_Mutation p.L210I 0.33 deleterious(0.05) probably_damaging(1) TCGA-2Z-A9JP-01 14 91937275 91937275 G A SMEK1 Silent p.H509H 0.40 TCGA-2Z-A9JP-01 15 64680123 64680123 C T TRIP4 Missense_Mutation p.R21W 0.09 tolerated(0.07) benign(0.014) TCGA-2Z-A9JP-01 15 72502795 72502795 C T PKM Missense_Mutation p.V91M 0.39 deleterious(0) probably_damaging(0.958) TCGA-2Z-A9JP-01 15 72855824 72855824 A C ARIH1 Missense_Mutation p.K298N 0.37 tolerated(0.23) benign(0.285) TCGA-2Z-A9JP-01 16 11772888 11772888 T A SNN 3'UTR 0.55 TCGA-2Z-A9JP-01 16 31371685 31371696 CATTGTCATCAC - ITGAX In_Frame_Del p.I255_T258del 0.38 TCGA-2Z-A9JP-01 17 21203904 21203904 C - MAP2K3 Frame_Shift_Del p.R72Vfs*7 0.09 TCGA-2Z-A9JP-01 17 33457438 33457438 C T FNDC8 Silent p.Y320Y 0.16 TCGA-2Z-A9JP-01 17 36104669 36104680 GTGGCCGTTGGT - HNF1B In_Frame_Del p.T66_H69del 0.42 TCGA-2Z-A9JP-01 17 42254547 42254547 A T ASB16 Missense_Mutation p.E337D 0.25 deleterious(0.04) benign(0.027) TCGA-2Z-A9JP-01 17 7490749 7490749 C T MPDU1 Silent p.T208T 0.37 TCGA-2Z-A9JP-01 17 75202482 75202482 G - SEC14L1 Frame_Shift_Del 0.23 TCGA-2Z-A9JP-01 18 24722672 24722672 C A CHST9 Missense_Mutation p.W34C 0.52 tolerated(0.13) benign(0.033) TCGA-2Z-A9JP-01 19 13033456 13033456 G C FARSA 3'UTR 0.25 TCGA-2Z-A9JP-01 19 37210602 37210602 G T ZNF567 Missense_Mutation p.D295Y 0.23 tolerated(0.07) probably_damaging(1) TCGA-2Z-A9JP-01 19 38872891 38872891 G T PSMD8 Intron 0.25 TCGA-2Z-A9JP-01 19 46273845 46273847 AAC - DMPK In_Frame_Del p.V607del 0.31 TCGA-2Z-A9JP-01 19 58490071 58490071 T C ZNF606 Silent p.K659K 0.29 TCGA-2Z-A9JP-01 1 118170384 118170384 G C FAM46C 3'UTR 0.38 TCGA-2Z-A9JP-01 1 12081878 12081878 T C MIIP Missense_Mutation p.V32A 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-2Z-A9JP-01 1 154956520 154956520 T G FLAD1 Missense_Mutation p.I117S 0.51 deleterious(0) probably_damaging(0.985) TCGA-2Z-A9JP-01 1 156823981 156823981 T C INSRR Missense_Mutation p.D67G 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-2Z-A9JP-01 1 157716438 157716438 A G FCRL2 3'UTR 0.41 TCGA-2Z-A9JP-01 1 158058227 158058227 A - KIRREL Frame_Shift_Del p.K344Rfs*7 0.30 TCGA-2Z-A9JP-01 1 201974944 201974944 A C RNPEP 3'UTR 0.29 TCGA-2Z-A9JP-01 1 233518353 233518353 G T MLK4 Missense_Mutation p.D1003Y 0.35 deleterious(0) possibly_damaging(0.59) TCGA-2Z-A9JP-01 1 236766347 236766347 A C HEATR1 Intron 0.33 TCGA-2Z-A9JP-01 1 27587473 27587473 T C WDTC1 5'UTR 0.40 TCGA-2Z-A9JP-01 1 3334463 3334463 C G PRDM16 Silent p.S921S 0.34 TCGA-2Z-A9JP-01 20 30064340 30064340 G A REM1 Missense_Mutation p.G31D 0.36 tolerated(0.08) benign(0.001) TCGA-2Z-A9JP-01 20 310248 310248 T C SOX12 3'UTR 0.26 TCGA-2Z-A9JP-01 22 32598439 32598439 C T RFPL2 5'UTR 0.29 TCGA-2Z-A9JP-01 22 44645466 44645466 G T KIAA1644 3'UTR 0.39 TCGA-2Z-A9JP-01 2 225688357 225688357 C T DOCK10 Missense_Mutation p.R1015Q 0.45 deleterious(0) possibly_damaging(0.801) TCGA-2Z-A9JP-01 2 232030606 232030607 - A PSMD1 Frame_Shift_Ins p.E866Rfs*7 0.21 TCGA-2Z-A9JP-01 2 234590634 234590635 GC T UGT1A7 Frame_Shift_Del p.L18* 0.37 TCGA-2Z-A9JP-01 2 238494751 238494751 T A RAB17 Missense_Mutation p.Q16L 0.31 deleterious(0.03) possibly_damaging(0.625) TCGA-2Z-A9JP-01 3 138478176 138478176 T C PIK3CB Missense_Mutation p.S4G 0.34 tolerated_low_confidence(0.16) benign(0.007) TCGA-2Z-A9JP-01 3 184052524 184052524 G A EIF4G1 Missense_Mutation p.R1550Q 0.35 deleterious(0) benign(0.392) TCGA-2Z-A9JP-01 3 48510454 48510454 T C SHISA5 3'UTR 0.33 TCGA-2Z-A9JP-01 3 53845336 53845336 T C CACNA1D Missense_Mutation p.L2150P 0.34 tolerated_low_confidence(0.12) benign(0.347) TCGA-2Z-A9JP-01 3 72842103 72842103 T C SHQ1 Missense_Mutation p.Y382C 0.31 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JP-01 3 9988391 9988391 G - PRRT3 Frame_Shift_Del p.E823Sfs*3 0.16 TCGA-2Z-A9JP-01 4 130014461 130014461 G C SCLT1 5'UTR 0.50 TCGA-2Z-A9JP-01 4 36179487 36179487 A C ARAP2 Missense_Mutation p.L607V 0.36 deleterious(0) possibly_damaging(0.531) TCGA-2Z-A9JP-01 5 138704728 138704728 A G PAIP2 3'UTR 0.82 TCGA-2Z-A9JP-01 5 139747021 139747021 G A SLC4A9 Missense_Mutation p.R701H 0.82 deleterious(0.01) benign(0.365) TCGA-2Z-A9JP-01 5 85913829 85913829 C T COX7C 5'UTR 0.41 TCGA-2Z-A9JP-01 6 112430643 112430643 G A LAMA4 Silent p.A1823A 0.51 TCGA-2Z-A9JP-01 6 112430644 112430644 G T LAMA4 Missense_Mutation p.A1823D 0.50 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JP-01 6 138745824 138745824 A - NHSL1 Frame_Shift_Del p.Q1410Rfs*19 0.19 TCGA-2Z-A9JP-01 6 54214540 54214540 T C TINAG Missense_Mutation p.L309P 0.50 deleterious(0.01) probably_damaging(0.977) TCGA-2Z-A9JP-01 6 56494230 56494230 A G DST Silent p.S894S 0.40 TCGA-2Z-A9JP-01 7 22200190 22200190 A G RAPGEF5 Missense_Mutation p.I338T 0.46 tolerated(0.58) benign(0.193) TCGA-2Z-A9JP-01 7 38902201 38902201 A T VPS41 Missense_Mutation p.Y64N 0.34 deleterious(0.03) benign(0.071) TCGA-2Z-A9JP-01 7 90897841 90897841 A G FZD1 3'UTR 0.44 TCGA-2Z-A9JP-01 7 94297050 94297051 - AAA PEG10 3'UTR 0.21 TCGA-2Z-A9JP-01 8 133823301 133823301 A G PHF20L1 Silent p.A286A 0.61 TCGA-2Z-A9JP-01 8 143747695 143747695 T C JRK RNA 0.52 TCGA-2Z-A9JP-01 8 145741535 145741535 C T RECQL4 Missense_Mutation p.S323N 0.64 tolerated(0.52) benign(0.047) TCGA-2Z-A9JP-01 9 100389788 100389788 T G TSTD2 Missense_Mutation p.R19S 0.30 tolerated_low_confidence(0.06) benign(0.169) TCGA-2Z-A9JQ-01 10 115401186 115401186 C T NRAP Missense_Mutation p.E421K 0.49 tolerated(0.89) benign(0.097) TCGA-2Z-A9JQ-01 10 134916320 134916320 A - GPR123 Frame_Shift_Del p.P126Rfs*171 0.32 TCGA-2Z-A9JQ-01 10 30615418 30615418 C T MTPAP Silent p.R309R 0.44 TCGA-2Z-A9JQ-01 10 99343384 99343384 C T ANKRD2 Missense_Mutation p.H329Y 0.40 deleterious(0) benign(0.081) TCGA-2Z-A9JQ-01 11 118898353 118898353 A G SLC37A4 Missense_Mutation p.S204P 0.38 tolerated(0.1) benign(0.104) TCGA-2Z-A9JQ-01 11 119077069 119077069 C T CBL 5'UTR 0.29 TCGA-2Z-A9JQ-01 11 129795021 129795021 A G PRDM10 Missense_Mutation p.L549S 0.38 deleterious(0.02) possibly_damaging(0.475) TCGA-2Z-A9JQ-01 11 19901514 19901521 CACCTCTG T NAV2 Frame_Shift_Del p.S204Ffs*141 0.59 TCGA-2Z-A9JQ-01 11 64557720 64557720 C T MAP4K2 Missense_Mutation p.G730S 0.49 deleterious(0) probably_damaging(0.993) TCGA-2Z-A9JQ-01 11 99690335 99690335 A TGAGTTGAGTTGAGTT CNTN5 Nonsense_Mutation p.K39delinsMS*VEL 0.18 TCGA-2Z-A9JQ-01 12 105582221 105582221 A G APPL2 Silent p.S494S 0.42 TCGA-2Z-A9JQ-01 12 113386980 113386982 CTG - OAS3 In_Frame_Del p.C449del 0.29 TCGA-2Z-A9JQ-01 12 20522210 20522210 C T PDE3A 5'UTR 0.31 TCGA-2Z-A9JQ-01 12 394474 394474 A C KDM5A 3'UTR 0.45 TCGA-2Z-A9JQ-01 12 52882218 52882218 C G KRT6A Missense_Mutation p.D440H 0.49 deleterious(0.02) possibly_damaging(0.501) TCGA-2Z-A9JQ-01 12 52985268 52985268 C A KRT72 Nonsense_Mutation p.E315* 0.38 TCGA-2Z-A9JQ-01 12 53460189 53460189 A G SPRYD3 Missense_Mutation p.L368P 0.05 tolerated(0.2) possibly_damaging(0.641) TCGA-2Z-A9JQ-01 13 52158822 52158822 C T WDFY2 5'UTR 0.32 TCGA-2Z-A9JQ-01 14 45584284 45584284 T C PRPF39 3'UTR 0.30 TCGA-2Z-A9JQ-01 15 40594770 40594770 T C PLCB2 Missense_Mutation p.D91G 0.27 tolerated(0.16) possibly_damaging(0.735) TCGA-2Z-A9JQ-01 15 43818453 43818453 G T MAP1A Missense_Mutation p.K1594N 0.43 possibly_damaging(0.474) TCGA-2Z-A9JQ-01 15 63918321 63918321 C G HERC1 Missense_Mutation p.D4380H 0.36 possibly_damaging(0.625) TCGA-2Z-A9JQ-01 15 81134366 81134386 CAGTGACAACTATGGATGAGC - KIAA1199 Intron 0.47 TCGA-2Z-A9JQ-01 15 92987897 92987897 C A ST8SIA2 Silent p.R194R 0.51 TCGA-2Z-A9JQ-01 15 94841631 94841631 G A MCTP2 Missense_Mutation p.R46H 0.33 tolerated(0.15) benign(0.11) TCGA-2Z-A9JQ-01 15 96875418 96875418 C A NR2F2 Silent p.P28P 0.20 TCGA-2Z-A9JQ-01 16 69600103 69600103 C G NFAT5 5'UTR 0.45 TCGA-2Z-A9JQ-01 16 84690911 84690911 C T KLHL36 Silent p.F166F 0.54 TCGA-2Z-A9JQ-01 16 89809242 89809242 T A FANCA Missense_Mutation p.K1244M 0.22 tolerated(0.08) possibly_damaging(0.781) TCGA-2Z-A9JQ-01 17 34185488 34185488 G T C17orf66 Silent p.A327A 0.19 TCGA-2Z-A9JQ-01 17 39975893 39975893 C - FKBP10 Frame_Shift_Del p.P345Rfs*20 0.21 TCGA-2Z-A9JQ-01 17 72859031 72859031 C T FDXR Missense_Mutation p.D505N 0.70 tolerated(0.06) benign(0.389) TCGA-2Z-A9JQ-01 17 73818652 73818652 T A UNK Silent p.A644A 0.64 TCGA-2Z-A9JQ-01 17 76869985 76869985 C A TIMP2 Silent p.A49A 0.56 TCGA-2Z-A9JQ-01 17 7749761 7749761 C - KDM6B Frame_Shift_Del p.K168Rfs*30 0.20 TCGA-2Z-A9JQ-01 17 79278931 79278931 G - LINC00482 RNA 0.33 TCGA-2Z-A9JQ-01 17 7976157 7976158 - G ALOX12B Frame_Shift_Ins p.N680Qfs*17 0.35 TCGA-2Z-A9JQ-01 18 9886730 9886730 A - TXNDC2 Frame_Shift_Del p.E85Gfs*85 0.32 TCGA-2Z-A9JQ-01 19 11797212 11797212 C A ZNF833P RNA 0.44 TCGA-2Z-A9JQ-01 19 18378080 18378080 G A KIAA1683 Silent p.A90A 0.45 TCGA-2Z-A9JQ-01 19 43258514 43258514 C T PSG8 Missense_Mutation p.S405N 0.42 tolerated(0.17) benign(0.031) TCGA-2Z-A9JQ-01 19 46000066 46000066 C A RTN2 Silent p.P6P 0.41 TCGA-2Z-A9JQ-01 19 48205073 48205073 A G GLTSCR1 Missense_Mutation p.T1362A 0.34 benign(0.19) TCGA-2Z-A9JQ-01 19 49404086 49404086 T C NUCB1 Silent p.L11L 0.33 TCGA-2Z-A9JQ-01 19 6464686 6464686 C T CRB3 5'UTR 0.33 TCGA-2Z-A9JQ-01 19 856058 856058 C - ELANE Frame_Shift_Del p.P234Rfs*6 0.35 TCGA-2Z-A9JQ-01 19 9297811 9297811 C A OR7D2 3'UTR 0.48 TCGA-2Z-A9JQ-01 19 9959917 9959917 G C PIN1 3'UTR 0.39 TCGA-2Z-A9JQ-01 19 9959918 9959918 C T PIN1 3'UTR 0.43 TCGA-2Z-A9JQ-01 1 109365929 109365929 A C AKNAD1 Intron 0.45 TCGA-2Z-A9JQ-01 1 120464974 120464974 C A NOTCH2 Missense_Mutation p.A1700S 0.28 tolerated(0.39) possibly_damaging(0.524) TCGA-2Z-A9JQ-01 1 120464975 120464975 C T NOTCH2 Missense_Mutation p.M1699I 0.28 tolerated(0.59) benign(0.001) TCGA-2Z-A9JQ-01 1 153636583 153636583 A G ILF2 Missense_Mutation p.L227P 0.35 deleterious(0) probably_damaging(0.991) TCGA-2Z-A9JQ-01 1 153636584 153636584 G A ILF2 Silent p.L227L 0.35 TCGA-2Z-A9JQ-01 1 156876627 156876627 C T PEAR1 Missense_Mutation p.P200L 0.33 tolerated(0.09) benign(0.15) TCGA-2Z-A9JQ-01 1 15707922 15707922 T A FHAD1 Missense_Mutation p.Y546N 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-2Z-A9JQ-01 1 16893707 16893707 G A NBPF1 Nonsense_Mutation p.Q936* 0.05 TCGA-2Z-A9JQ-01 1 200869255 200869255 G A C1orf106 Silent p.A68A 0.44 TCGA-2Z-A9JQ-01 1 216419959 216419959 C T USH2A Missense_Mutation p.R926H 0.43 benign(0.344) TCGA-2Z-A9JQ-01 1 247094695 247094695 G A AHCTF1 5'UTR 0.35 TCGA-2Z-A9JQ-01 1 37271779 37271779 G T GRIK3 Missense_Mutation p.T747K 0.05 deleterious(0.01) probably_damaging(0.968) TCGA-2Z-A9JQ-01 1 51777837 51777837 G A TTC39A Silent p.S107S 0.07 TCGA-2Z-A9JQ-01 1 62288639 62288639 G C INADL Missense_Mutation p.R569T 0.56 deleterious(0.02) probably_damaging(0.991) TCGA-2Z-A9JQ-01 1 94486884 94486884 G T ABCA4 Missense_Mutation p.P1644T 0.05 deleterious(0.01) benign(0.021) TCGA-2Z-A9JQ-01 20 2473416 2473416 C T ZNF343 Missense_Mutation p.R78K 0.46 tolerated(0.54) benign(0.12) TCGA-2Z-A9JQ-01 20 37653904 37653904 A G DHX35 Missense_Mutation p.H568R 0.40 tolerated(0.11) benign(0.013) TCGA-2Z-A9JQ-01 20 60508065 60508065 G A CDH4 Missense_Mutation p.M754I 0.38 tolerated(0.13) benign(0.001) TCGA-2Z-A9JQ-01 21 10959746 10959746 T C TPTE Silent p.S76S 0.24 TCGA-2Z-A9JQ-01 21 41725475 41725475 C A DSCAM Missense_Mutation p.R284L 0.40 tolerated(0.12) possibly_damaging(0.889) TCGA-2Z-A9JQ-01 22 28379354 28379354 C A TTC28 Missense_Mutation p.G2101W 0.46 deleterious_low_confidence(0) probably_damaging(1) TCGA-2Z-A9JQ-01 2 109102163 109102164 AA - GCC2 Frame_Shift_Del p.K1230Gfs*11 0.29 TCGA-2Z-A9JQ-01 2 135779307 135779307 A T MAP3K19 Nonsense_Mutation p.L39* 0.38 TCGA-2Z-A9JQ-01 2 179435106 179435106 A T TTN Silent p.V25251V 0.44 TCGA-2Z-A9JQ-01 2 203776243 203776243 G C WDR12 5'UTR 0.45 TCGA-2Z-A9JQ-01 2 225378264 225378264 C A CUL3 Nonsense_Mutation p.E211* 0.36 TCGA-2Z-A9JQ-01 2 241622010 241622010 G A AQP12B Missense_Mutation p.A82V 0.05 tolerated(1) benign(0.006) TCGA-2Z-A9JQ-01 2 27354278 27354278 G A PREB 3'UTR 0.43 TCGA-2Z-A9JQ-01 2 43452438 43452438 T C ZFP36L2 Missense_Mutation p.K169E 0.60 deleterious(0) probably_damaging(0.973) TCGA-2Z-A9JQ-01 2 46986775 46986775 T C SOCS5 Missense_Mutation p.L369P 0.48 deleterious(0) probably_damaging(0.995) TCGA-2Z-A9JQ-01 2 5834279 5834279 A G SOX11 3'UTR 0.10 TCGA-2Z-A9JQ-01 2 74597421 74597421 C T DCTN1 Silent p.K393K 0.53 TCGA-2Z-A9JQ-01 2 88082304 88082304 T A RGPD2 Missense_Mutation p.K1413N 0.40 tolerated(0.19) possibly_damaging(0.607) TCGA-2Z-A9JQ-01 2 98844793 98844793 C T VWA3B Silent p.S716S 0.30 TCGA-2Z-A9JQ-01 3 119133437 119133437 C T ARHGAP31 Silent p.D887D 0.45 TCGA-2Z-A9JQ-01 3 142383090 142383093 GTAC TTA PLS1 Frame_Shift_Del p.S4Ifs*20 0.28 TCGA-2Z-A9JQ-01 3 38892111 38892111 G A SCN11A Silent p.S1396S 0.39 TCGA-2Z-A9JQ-01 3 42590043 42590043 T - SEC22C 3'Flank 0.26 TCGA-2Z-A9JQ-01 3 48457576 48457576 C - PLXNB1 Frame_Shift_Del p.D1161Ifs*22 0.22 TCGA-2Z-A9JQ-01 3 49136634 49136634 C A QARS Missense_Mutation p.C556F 0.34 tolerated(0.43) probably_damaging(1) TCGA-2Z-A9JQ-01 3 53699775 53699775 T G CACNA1D Nonsense_Mutation p.Y285* 0.36 TCGA-2Z-A9JQ-01 4 1729484 1729484 C G TACC3 Missense_Mutation p.Q119E 0.53 deleterious(0.01) possibly_damaging(0.638) TCGA-2Z-A9JQ-01 4 1729485 1729485 A T TACC3 Missense_Mutation p.Q119L 0.52 deleterious(0) possibly_damaging(0.802) TCGA-2Z-A9JQ-01 4 47574963 47574963 G T ATP10D Missense_Mutation p.W1105C 0.33 deleterious(0) probably_damaging(1) TCGA-2Z-A9JQ-01 4 54325765 54325765 G A FIP1L1 3'UTR 0.46 TCGA-2Z-A9JQ-01 4 74027050 74027050 G T ANKRD17 Missense_Mutation p.S188Y 0.43 benign(0.205) TCGA-2Z-A9JQ-01 4 79229272 79229272 G - FRAS1 Frame_Shift_Del p.A530Pfs*9 0.28 TCGA-2Z-A9JQ-01 4 79387543 79387543 C T FRAS1 Missense_Mutation p.S2404F 0.40 possibly_damaging(0.498) TCGA-2Z-A9JQ-01 4 89601309 89601309 G T HERC3 Silent p.L754L 0.06 TCGA-2Z-A9JQ-01 5 121413349 121413349 C G LOX Missense_Mutation p.G111A 0.41 tolerated(0.39) benign(0.001) TCGA-2Z-A9JQ-01 5 1258735 1258735 T C TERT Missense_Mutation p.I1004V 0.33 tolerated(0.06) benign(0.033) TCGA-2Z-A9JQ-01 5 1258736 1258736 C G TERT Missense_Mutation p.K1003N 0.33 deleterious(0) benign(0.175) TCGA-2Z-A9JQ-01 5 140176343 140176343 C G PCDHA2 Missense_Mutation p.D598E 0.38 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-2Z-A9JQ-01 5 149212354 149212354 C T PPARGC1B Missense_Mutation p.P240S 0.38 tolerated(0.23) benign(0.219) TCGA-2Z-A9JQ-01 5 176829252 176829252 C A F12 3'UTR 0.45 TCGA-2Z-A9JQ-01 5 33984582 33984582 A G SLC45A2 Missense_Mutation p.I36T 0.40 deleterious(0) benign(0.371) TCGA-2Z-A9JQ-01 6 170862258 170862258 G T PSMB1 Missense_Mutation p.P25T 0.11 tolerated(0.09) possibly_damaging(0.616) TCGA-2Z-A9JQ-01 6 401489 401489 C T IRF4 Missense_Mutation p.P271S 0.36 deleterious(0.04) probably_damaging(0.982) TCGA-2Z-A9JQ-01 6 82906099 82906099 A T IBTK Silent p.S1030S 0.33 TCGA-2Z-A9JQ-01 6 90455064 90455064 A T MDN1 Missense_Mutation p.M1369K 0.39 possibly_damaging(0.905) TCGA-2Z-A9JQ-01 6 90491213 90491213 A G MDN1 Silent p.D516D 0.39 TCGA-2Z-A9JQ-01 7 100210558 100210558 G T MOSPD3 Silent p.R48R 0.46 TCGA-2Z-A9JQ-01 7 100680588 100680588 G T MUC17 Missense_Mutation p.S1964I 0.46 unknown(0) TCGA-2Z-A9JQ-01 7 107389353 107389358 TGGATC CAT CBLL1 In_Frame_Del p.G15_S16delinsI 0.35 TCGA-2Z-A9JQ-01 7 27168691 27168691 A G HOXA4 3'UTR 0.36 TCGA-2Z-A9JQ-01 7 57187457 57187457 A G ZNF479 3'UTR 0.49 TCGA-2Z-A9JQ-01 7 57188741 57188741 T - ZNF479 Frame_Shift_Del p.K127Nfs*74 0.28 TCGA-2Z-A9JQ-01 7 7557428 7557428 C T COL28A1 Missense_Mutation p.G285E 0.45 tolerated(1) possibly_damaging(0.745) TCGA-2Z-A9JQ-01 8 17503480 17503480 T A MTUS1 Silent p.P1256P 0.42 TCGA-2Z-A9JQ-01 8 19709379 19709379 G C INTS10 3'UTR 0.43 TCGA-2Z-A9JQ-01 8 23702289 23702289 A G STC1 Silent p.S246S 0.56 TCGA-2Z-A9JQ-01 9 136082700 136082700 G C OBP2B Missense_Mutation p.L101V 0.37 tolerated(0.94) benign(0.004) TCGA-2Z-A9JQ-01 9 138556579 138556579 A G LCN9 Missense_Mutation p.E82G 0.06 deleterious(0.01) probably_damaging(0.941) TCGA-2Z-A9JQ-01 9 71397648 71397648 G T FAM122A 3'UTR 0.41 TCGA-2Z-A9JQ-01 X 102005730 102005730 G T BHLHB9 3'UTR 0.84 TCGA-2Z-A9JQ-01 X 133906199 133906199 G A FAM122B Silent p.F257F 0.80 TCGA-2Z-A9JQ-01 X 53455651 53455651 G T RIBC1 Intron 0.82 TCGA-2Z-A9JR-01 10 103717456 103717456 T - C10orf76 Frame_Shift_Del p.N510Mfs*14 0.25 TCGA-2Z-A9JR-01 10 37442571 37442573 AAT - ANKRD30A In_Frame_Del p.I538del 0.08 TCGA-2Z-A9JR-01 10 37478466 37478468 AAT - ANKRD30A In_Frame_Del p.I776del 0.16 TCGA-2Z-A9JR-01 10 74095644 74095644 A T DNAJB12 Missense_Mutation p.M385K 0.24 deleterious(0.02) benign(0.417) TCGA-2Z-A9JR-01 11 118526375 118526375 A T PHLDB1 Missense_Mutation p.Y1312F 0.36 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JR-01 11 36615488 36615488 A T RAG2 Silent p.T77T 0.29 TCGA-2Z-A9JR-01 11 4095775 4095788 AAGGTCCATCTGGA - STIM1 Frame_Shift_Del p.V280Efs*5 0.25 TCGA-2Z-A9JR-01 11 62156671 62156671 A T ASRGL1 Silent p.T186T 0.30 TCGA-2Z-A9JR-01 12 133158030 133158030 G A FBRSL1 Missense_Mutation p.A657T 0.33 tolerated(0.88) benign(0.034) TCGA-2Z-A9JR-01 12 48723566 48723566 G A H1FNT Silent p.A164A 0.30 TCGA-2Z-A9JR-01 14 96129685 96129685 G T TCL6 RNA 0.21 TCGA-2Z-A9JR-01 15 50593523 50593523 C G GABPB1 Missense_Mutation p.D172H 0.38 tolerated(0.38) benign(0.417) TCGA-2Z-A9JR-01 15 64668943 64668943 T A KIAA0101 Nonsense_Mutation p.K97* 0.25 TCGA-2Z-A9JR-01 16 2329051 2329051 G A ABCA3 Silent p.Y1480Y 0.29 TCGA-2Z-A9JR-01 16 30732250 30732250 C T SRCAP Silent p.G1068G 0.12 TCGA-2Z-A9JR-01 16 69724916 69724916 A T NFAT5 Silent p.P616P 0.53 TCGA-2Z-A9JR-01 17 32907888 32907888 C - TMEM132E 5'UTR 0.73 TCGA-2Z-A9JR-01 17 38907279 38907279 G T KRT25 Missense_Mutation p.A295D 0.22 deleterious(0.01) probably_damaging(1) TCGA-2Z-A9JR-01 17 39786704 39786704 C T KRT42P RNA 0.33 TCGA-2Z-A9JR-01 17 48227849 48227849 G A PPP1R9B Missense_Mutation p.P9L 0.59 deleterious(0.03) benign(0.018) TCGA-2Z-A9JR-01 17 61607776 61607776 A G KCNH6 Missense_Mutation p.Q183R 0.15 deleterious(0.05) benign(0.003) TCGA-2Z-A9JR-01 17 73038343 73038343 G - ATP5H Frame_Shift_Del p.A51Vfs*27 0.31 TCGA-2Z-A9JR-01 17 73700857 73700857 T G SAP30BP Missense_Mutation p.M208R 0.12 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9JR-01 19 12945990 12945990 G T RTBDN 5'UTR 0.07 TCGA-2Z-A9JR-01 19 1465652 1465652 G - APC2 Frame_Shift_Del p.S785Hfs*252 0.23 TCGA-2Z-A9JR-01 19 23545348 23545348 A G ZNF91 Missense_Mutation p.C145R 0.37 tolerated(0.4) possibly_damaging(0.724) TCGA-2Z-A9JR-01 1 10473152 10473152 T C PGD Missense_Mutation p.S230P 0.25 deleterious(0) probably_damaging(1) TCGA-2Z-A9JR-01 1 144951971 144951971 T G PDE4DIP Intron 0.08 TCGA-2Z-A9JR-01 1 145439570 145439594 TACTCGATTTTCTTTCCCTTCAGGT - TXNIP Splice_Site p.X84_splice 0.12 TCGA-2Z-A9JR-01 1 150390180 150390180 C T RPRD2 Missense_Mutation p.P105L 0.30 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-2Z-A9JR-01 1 19491316 19491316 G A UBR4 Silent p.T1496T 0.30 TCGA-2Z-A9JR-01 1 201777104 201777104 G T NAV1 Silent p.A1224A 0.32 TCGA-2Z-A9JR-01 1 214819961 214819961 A G CENPF Missense_Mutation p.T2350A 0.34 benign(0) TCGA-2Z-A9JR-01 1 227216669 227216669 T C CDC42BPA Missense_Mutation p.K1339R 0.35 tolerated(0.52) benign(0.072) TCGA-2Z-A9JR-01 1 228529175 228529175 A G OBSCN Missense_Mutation p.D6922G 0.05 probably_damaging(0.999) TCGA-2Z-A9JR-01 1 51439795 51439795 G A CDKN2C Silent p.E120E 0.30 TCGA-2Z-A9JR-01 1 77620016 77620016 G C PIGK Intron 0.29 TCGA-2Z-A9JR-01 20 44520635 44520635 A T CTSA Missense_Mutation p.D110V 0.36 deleterious(0.05) benign(0.118) TCGA-2Z-A9JR-01 20 62044846 62044846 C T KCNQ2 Missense_Mutation p.G574S 0.36 deleterious(0) probably_damaging(1) TCGA-2Z-A9JR-01 22 35695893 35695893 C T TOM1 5'UTR 0.34 TCGA-2Z-A9JR-01 2 130832285 130832285 G A POTEF Silent p.A920A 0.27 TCGA-2Z-A9JR-01 2 61258902 61258902 G T PEX13 Missense_Mutation p.M147I 0.35 deleterious(0.03) possibly_damaging(0.688) TCGA-2Z-A9JR-01 2 89036089 89036089 G A RPIA Missense_Mutation p.G212R 0.33 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9JR-01 3 44701072 44701072 T A ZNF35 Missense_Mutation p.I406N 0.35 tolerated(0.09) possibly_damaging(0.841) TCGA-2Z-A9JR-01 4 106161545 106161545 T - TET2 Intron 0.23 TCGA-2Z-A9JR-01 4 106746923 106746923 A G GSTCD Missense_Mutation p.N499S 0.33 deleterious(0) probably_damaging(0.996) TCGA-2Z-A9JR-01 4 146063415 146063415 A T OTUD4 Silent p.P520P 0.33 TCGA-2Z-A9JR-01 4 81207513 81207513 G A FGF5 Missense_Mutation p.R165H 0.07 deleterious(0.03) probably_damaging(0.991) TCGA-2Z-A9JR-01 4 89583701 89583701 A - HERC3 Frame_Shift_Del p.I423Sfs*38 0.21 TCGA-2Z-A9JR-01 5 107700547 107700547 A T FBXL17 Nonsense_Mutation p.C422* 0.25 TCGA-2Z-A9JR-01 5 112154711 112154711 G T APC Missense_Mutation p.D328Y 0.23 probably_damaging(0.912) TCGA-2Z-A9JR-01 5 132197085 132197085 A G GDF9 3'UTR 0.08 TCGA-2Z-A9JR-01 5 137626353 137626353 C T CDC25C Missense_Mutation p.G280E 0.31 tolerated(0.64) benign(0.013) TCGA-2Z-A9JR-01 5 151784837 151784837 G A NMUR2 5'UTR 0.46 TCGA-2Z-A9JR-01 5 37183541 37183541 G A C5orf42 Missense_Mutation p.S1581F 0.37 deleterious(0) probably_damaging(0.998) TCGA-2Z-A9JR-01 5 68861995 68861995 G A GTF2H2C Missense_Mutation p.A32T 0.28 tolerated(0.15) benign(0.043) TCGA-2Z-A9JR-01 5 68861996 68861996 C G GTF2H2C Missense_Mutation p.A32G 0.28 tolerated(0.24) benign(0.219) TCGA-2Z-A9JR-01 5 76700575 76700575 G A PDE8B Missense_Mutation p.R414K 0.31 deleterious(0.02) benign(0.15) TCGA-2Z-A9JR-01 6 160461724 160461724 G C IGF2R Missense_Mutation p.R483P 0.30 deleterious(0.04) probably_damaging(0.986) TCGA-2Z-A9JR-01 6 34950966 34950966 C A ANKS1A Missense_Mutation p.S295R 0.33 deleterious(0) probably_damaging(0.979) TCGA-2Z-A9JR-01 7 104742528 104742541 AATACTGTACTTAC - KMT2E Frame_Shift_Del p.T696Rfs*5 0.29 TCGA-2Z-A9JR-01 7 108204426 108204426 C G THAP5 3'UTR 0.34 TCGA-2Z-A9JR-01 7 150655488 150655488 C A KCNH2 Missense_Mutation p.G192V 0.12 tolerated(0.12) benign(0.018) TCGA-2Z-A9JR-01 7 2580929 2580929 C T BRAT1 Intron 0.16 TCGA-2Z-A9JR-01 7 76883839 76883844 ATCATC - CCDC146 In_Frame_Del p.I157_I158del 0.26 TCGA-2Z-A9JR-01 8 133895243 133895243 T C TG Silent p.C358C 0.35 TCGA-2Z-A9JR-01 8 67577722 67577722 A - VCPIP1 Frame_Shift_Del p.L491Cfs*12 0.28 TCGA-2Z-A9JR-01 8 95262522 95262522 G C GEM 3'UTR 0.30 TCGA-2Z-A9JR-01 8 99015912 99015912 A T MATN2 Nonsense_Mutation p.K410* 0.21 TCGA-2Z-A9JR-01 9 124544633 124544633 T C DAB2IP Silent p.D1114D 0.45 TCGA-2Z-A9JR-01 9 79862227 79862227 G T VPS13A Missense_Mutation p.L651F 0.34 deleterious(0) possibly_damaging(0.594) TCGA-2Z-A9JS-01 10 102719193 102719193 C G FAM178A Missense_Mutation p.D1142E 0.47 deleterious(0) benign(0.392) TCGA-2Z-A9JS-01 10 103360566 103360566 C T DPCD Missense_Mutation p.P73S 0.31 tolerated(0.49) benign(0.005) TCGA-2Z-A9JS-01 10 121578813 121578813 A G INPP5F Intron 0.57 TCGA-2Z-A9JS-01 10 387190 387190 A G DIP2C Missense_Mutation p.I1178T 0.48 tolerated(0.08) possibly_damaging(0.828) TCGA-2Z-A9JS-01 10 390824 390824 G A DIP2C Silent p.C1126C 0.38 TCGA-2Z-A9JS-01 10 390825 390825 C T DIP2C Missense_Mutation p.C1126Y 0.38 tolerated(1) benign(0) TCGA-2Z-A9JS-01 10 390826 390826 A G DIP2C Missense_Mutation p.C1126R 0.38 deleterious(0.03) benign(0.023) TCGA-2Z-A9JS-01 10 60560020 60560020 C A BICC1 Missense_Mutation p.H598N 0.45 tolerated(0.18) benign(0.263) TCGA-2Z-A9JS-01 10 61824009 61824009 G A ANK3 Silent p.I4119I 0.45 TCGA-2Z-A9JS-01 10 70652348 70652348 A G STOX1 Silent p.T942T 0.40 TCGA-2Z-A9JS-01 10 70928364 70928364 G C VPS26A Missense_Mutation p.D283H 0.44 deleterious(0) benign(0.241) TCGA-2Z-A9JS-01 10 91174531 91174531 G C IFIT5 5'UTR 0.28 TCGA-2Z-A9JS-01 11 128359248 128359248 G A ETS1 Missense_Mutation p.L158F 0.40 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JS-01 11 13402758 13402758 C T ARNTL Missense_Mutation p.T524M 0.50 tolerated(0.2) benign(0.343) TCGA-2Z-A9JS-01 11 46637239 46637239 T C HARBI1 Silent p.R183R 0.44 TCGA-2Z-A9JS-01 11 57509691 57509691 G T C11orf31 3'UTR 0.35 TCGA-2Z-A9JS-01 11 62650443 62650443 A G SLC3A2 Missense_Mutation p.Q323R 0.35 tolerated(0.19) benign(0.029) TCGA-2Z-A9JS-01 11 6589765 6589765 T A DNHD1 Missense_Mutation p.L4207H 0.37 probably_damaging(1) TCGA-2Z-A9JS-01 11 73689030 73689030 T C UCP2 Missense_Mutation p.N80D 0.24 tolerated(0.09) benign(0.156) TCGA-2Z-A9JS-01 12 102127402 102127402 T C SYCP3 Missense_Mutation p.Q135R 0.30 tolerated(0.05) possibly_damaging(0.582) TCGA-2Z-A9JS-01 12 110825587 110825587 A T ANAPC7 Missense_Mutation p.F245I 0.30 tolerated(0.36) benign(0.024) TCGA-2Z-A9JS-01 12 112664523 112664523 T C HECTD4 Silent p.L2152L 0.24 TCGA-2Z-A9JS-01 12 48543086 48543086 G A ASB8 3'UTR 0.41 TCGA-2Z-A9JS-01 12 51108338 51108338 C A DIP2B Missense_Mutation p.T937K 0.47 deleterious(0) benign(0.342) TCGA-2Z-A9JS-01 12 68051341 68051341 G T DYRK2 Silent p.V218V 0.50 TCGA-2Z-A9JS-01 12 7031532 7031532 C T ENO2 Missense_Mutation p.S401F 0.47 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-2Z-A9JS-01 12 71016317 71016317 A T PTPRB Missense_Mutation p.N187K 0.40 tolerated_low_confidence(0.08) benign(0.075) TCGA-2Z-A9JS-01 12 72083474 72083474 G A TMEM19 Silent p.G78G 0.35 TCGA-2Z-A9JS-01 12 81627129 81627129 G A ACSS3 Missense_Mutation p.G533E 0.40 deleterious(0) probably_damaging(0.965) TCGA-2Z-A9JS-01 14 102552294 102552294 G A HSP90AA1 Silent p.I232I 0.41 TCGA-2Z-A9JS-01 14 24909828 24909828 A G SDR39U1 Intron 0.29 TCGA-2Z-A9JS-01 14 45578916 45578916 A T PRPF39 Missense_Mutation p.E370V 0.50 deleterious(0.04) benign(0.406) TCGA-2Z-A9JS-01 14 50100020 50100024 GTTTA - DNAAF2 Frame_Shift_Del p.V615Efs*12 0.40 TCGA-2Z-A9JS-01 14 61747022 61747022 C T TMEM30B Missense_Mutation p.A282T 0.42 tolerated(0.24) benign(0.003) TCGA-2Z-A9JS-01 14 70177853 70177853 T A KIAA0247 3'UTR 0.24 TCGA-2Z-A9JS-01 14 89154813 89154813 T C EML5 Silent p.G848G 0.07 TCGA-2Z-A9JS-01 15 23811141 23811141 G T MKRN3 Missense_Mutation p.G71V 0.07 tolerated(0.08) benign(0.307) TCGA-2Z-A9JS-01 15 24927475 24927475 C G NPAP1 3'UTR 0.51 TCGA-2Z-A9JS-01 15 41387985 41387985 T C INO80 Silent p.T95T 0.29 TCGA-2Z-A9JS-01 15 50168660 50168660 G T ATP8B4 Missense_Mutation p.L948M 0.49 deleterious(0.04) possibly_damaging(0.721) TCGA-2Z-A9JS-01 15 72176078 72176078 C G MYO9A Splice_Site p.X1752_splice 0.44 TCGA-2Z-A9JS-01 15 74925259 74925259 G A EDC3 Silent p.V407V 0.46 TCGA-2Z-A9JS-01 15 74925260 74925260 A G EDC3 Missense_Mutation p.V407A 0.45 deleterious(0) probably_damaging(0.97) TCGA-2Z-A9JS-01 15 91424718 91424718 C T FURIN Silent p.H665H 0.45 TCGA-2Z-A9JS-01 16 14989875 14989875 A G NOMO1 3'UTR 0.16 TCGA-2Z-A9JS-01 16 24801182 24801182 A G TNRC6A Missense_Mutation p.I407V 0.56 tolerated(0.81) benign(0.001) TCGA-2Z-A9JS-01 16 2546779 2546779 G A RP11-20I23.1 Silent p.A210A 0.30 TCGA-2Z-A9JS-01 16 335403 335403 G A PDIA2 Missense_Mutation p.G296D 0.71 tolerated(0.42) benign(0.02) TCGA-2Z-A9JS-01 16 4747050 4747050 C T ANKS3 Silent p.G650G 0.24 TCGA-2Z-A9JS-01 16 4828111 4828111 G T SEPT12 Missense_Mutation p.P284H 0.27 tolerated(0.13) probably_damaging(0.971) TCGA-2Z-A9JS-01 16 89294957 89294957 A T ZNF778 Missense_Mutation p.E726V 0.54 deleterious(0) possibly_damaging(0.83) TCGA-2Z-A9JS-01 17 18907448 18907448 T C FAM83G 5'UTR 0.61 TCGA-2Z-A9JS-01 17 33977776 33977776 T C AP2B1 Silent p.I588I 0.28 TCGA-2Z-A9JS-01 17 38285937 38285937 G - MSL1 Intron 0.34 TCGA-2Z-A9JS-01 17 42476884 42476891 GAGCGGCT TA GPATCH8 Nonsense_Mutation p.S852_S854delins* 0.59 TCGA-2Z-A9JS-01 17 43585817 43585817 T - LRRC37A4P Intron 0.22 TCGA-2Z-A9JS-01 17 44952668 44952668 C T WNT9B Missense_Mutation p.S179F 0.04 tolerated(0.1) possibly_damaging(0.544) TCGA-2Z-A9JS-01 17 48184183 48184187 CCCAG - PDK2 Frame_Shift_Del p.A183Sfs*15 0.23 TCGA-2Z-A9JS-01 17 48540788 48540788 C A ACSF2 Missense_Mutation p.N307K 0.28 deleterious(0) benign(0.063) TCGA-2Z-A9JS-01 17 65343241 65343241 T A PSMD12 Missense_Mutation p.K262N 0.55 deleterious(0.01) possibly_damaging(0.461) TCGA-2Z-A9JS-01 17 73826558 73826558 T G UNC13D Missense_Mutation p.E905D 0.54 tolerated(0.6) benign(0.003) TCGA-2Z-A9JS-01 17 79082614 79082615 - A BAIAP2 Intron 0.13 TCGA-2Z-A9JS-01 18 14852332 14852332 A G ANKRD30B Silent p.L1344L 0.41 TCGA-2Z-A9JS-01 18 211361 211361 A T USP14 3'UTR 0.33 TCGA-2Z-A9JS-01 18 33736559 33736559 A T ELP2 Missense_Mutation p.N534I 0.43 deleterious(0) benign(0.112) TCGA-2Z-A9JS-01 18 60036643 60036643 A G TNFRSF11A Missense_Mutation p.D498G 0.35 deleterious(0.04) possibly_damaging(0.521) TCGA-2Z-A9JS-01 18 6870695 6870695 G T ARHGAP28 Missense_Mutation p.K147N 0.36 tolerated(0.18) benign(0.033) TCGA-2Z-A9JS-01 18 6870698 6870698 A T ARHGAP28 Missense_Mutation p.K148N 0.36 tolerated(0.26) benign(0.006) TCGA-2Z-A9JS-01 19 16643886 16643886 T A CHERP Missense_Mutation p.D153V 0.46 tolerated(0.09) probably_damaging(0.991) TCGA-2Z-A9JS-01 19 17766949 17766949 C A UNC13A Missense_Mutation p.E342D 0.35 tolerated_low_confidence(0.14) benign(0) TCGA-2Z-A9JS-01 19 2194549 2194549 G A DOT1L Nonsense_Mutation p.W208* 0.46 TCGA-2Z-A9JS-01 19 33350836 33350836 G - SLC7A9 Frame_Shift_Del p.L262Wfs*2 0.27 TCGA-2Z-A9JS-01 19 35660635 35660635 A G FXYD5 3'UTR 0.50 TCGA-2Z-A9JS-01 19 39052079 39052079 G C RYR1 Missense_Mutation p.Q4203H 0.32 benign(0.002) TCGA-2Z-A9JS-01 19 50155522 50155522 A T SCAF1 Missense_Mutation p.R626W 0.51 unknown(0) TCGA-2Z-A9JS-01 19 50209661 50209661 G C CPT1C Missense_Mutation p.G445A 0.46 tolerated(1) probably_damaging(1) TCGA-2Z-A9JS-01 19 50374877 50374877 G T AKT1S1 Missense_Mutation p.P205H 0.30 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JS-01 19 50453263 50453263 T C SIGLEC11 Silent p.Q687Q 0.19 TCGA-2Z-A9JS-01 1 100573051 100573051 T G SASS6 Missense_Mutation p.K402T 0.42 deleterious(0) probably_damaging(0.976) TCGA-2Z-A9JS-01 1 111990187 111990187 A T WDR77 Missense_Mutation p.L105M 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-2Z-A9JS-01 1 144952117 144952117 T C PDE4DIP Intron 0.14 TCGA-2Z-A9JS-01 1 149907227 149907227 T C MTMR11 Missense_Mutation p.D97G 0.34 deleterious(0) possibly_damaging(0.706) TCGA-2Z-A9JS-01 1 151009216 151009216 A T BNIPL Missense_Mutation p.Q5H 0.32 tolerated_low_confidence(0.05) possibly_damaging(0.694) TCGA-2Z-A9JS-01 1 153751216 153751216 T A SLC27A3 Missense_Mutation p.Y548N 0.42 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JS-01 1 153903435 153903435 A C DENND4B Missense_Mutation p.W1368G 0.37 deleterious(0) probably_damaging(0.986) TCGA-2Z-A9JS-01 1 155258126 155258126 G A HCN3 Missense_Mutation p.G733R 0.44 deleterious_low_confidence(0.01) benign(0.026) TCGA-2Z-A9JS-01 1 158911893 158911893 A C PYHIN1 Silent p.R236R 0.08 TCGA-2Z-A9JS-01 1 17022934 17022934 T C ESPNP RNA 0.32 TCGA-2Z-A9JS-01 1 2116185 2116185 C A C1orf86 3'Flank 0.41 TCGA-2Z-A9JS-01 1 229684985 229684985 A G ABCB10 Silent p.T238T 0.45 TCGA-2Z-A9JS-01 1 27023737 27023737 G A ARID1A Silent p.A281A 0.35 TCGA-2Z-A9JS-01 1 39550024 39550024 G C MACF1 Missense_Mutation p.W45S 0.34 possibly_damaging(0.661) TCGA-2Z-A9JS-01 1 78034104 78034104 T C ZZZ3 Silent p.K793K 0.47 TCGA-2Z-A9JS-01 20 56139426 56139426 A G PCK1 Missense_Mutation p.N388S 0.24 deleterious(0.01) benign(0.002) TCGA-2Z-A9JS-01 20 61436359 61436359 G C OGFR Missense_Mutation p.A50P 0.26 tolerated(0.34) possibly_damaging(0.527) TCGA-2Z-A9JS-01 20 62126370 62126370 C T EEF1A2 Missense_Mutation p.A137T 0.62 deleterious_low_confidence(0) benign(0.172) TCGA-2Z-A9JS-01 20 62843443 62843443 G A MYT1 Missense_Mutation p.G490D 0.31 probably_damaging(1) TCGA-2Z-A9JS-01 21 43505510 43505510 T A UMODL1 Silent p.L197L 0.56 TCGA-2Z-A9JS-01 22 18028280 18028280 G A CECR2 Silent p.P1080P 0.11 TCGA-2Z-A9JS-01 22 18032673 18032673 A T CECR2 3'UTR 0.44 TCGA-2Z-A9JS-01 22 21328894 21328894 G T AIFM3 Silent p.V197V 0.44 TCGA-2Z-A9JS-01 22 29835257 29835257 C T RFPL1 Intron 0.43 TCGA-2Z-A9JS-01 22 37462120 37462120 T C TMPRSS6 Nonstop_Mutation p.*812Wext*96 0.41 TCGA-2Z-A9JS-01 22 37975978 37975978 G A LGALS2 5'UTR 0.24 TCGA-2Z-A9JS-01 22 45075483 45075483 A T PRR5 5'UTR 0.50 TCGA-2Z-A9JS-01 22 45931203 45931203 T A FBLN1 Missense_Mutation p.L303Q 0.45 tolerated(0.18) probably_damaging(0.973) TCGA-2Z-A9JS-01 22 50502534 50502534 T C MLC1 Missense_Mutation p.K330E 0.36 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-2Z-A9JS-01 2 103090462 103090462 C G SLC9A4 Missense_Mutation p.L82V 0.47 deleterious(0.02) benign(0.21) TCGA-2Z-A9JS-01 2 109292439 109292439 C T LIMS1 Silent p.I262I 0.44 TCGA-2Z-A9JS-01 2 109379888 109379888 A G RANBP2 Missense_Mutation p.N965D 0.50 tolerated(0.08) benign(0.016) TCGA-2Z-A9JS-01 2 170058161 170058163 TTA - LRP2 In_Frame_Del p.N2810del 0.53 TCGA-2Z-A9JS-01 2 174820712 174820712 G A SP3 Silent p.I176I 0.43 TCGA-2Z-A9JS-01 2 210561373 210561373 C - MAP2 Frame_Shift_Del p.P1430Lfs*16 0.27 TCGA-2Z-A9JS-01 2 219205495 219205496 - G PNKD Frame_Shift_Ins p.T171Dfs*13 0.24 TCGA-2Z-A9JS-01 2 220396750 220396750 G A ASIC4 Missense_Mutation p.R379Q 0.17 deleterious(0.01) possibly_damaging(0.845) TCGA-2Z-A9JS-01 2 241835325 241835325 C G C2orf54 Silent p.A30A 0.43 TCGA-2Z-A9JS-01 2 25042856 25042856 G A ADCY3 Missense_Mutation p.T1127I 0.39 deleterious(0.03) benign(0.003) TCGA-2Z-A9JS-01 2 32740321 32740321 T C BIRC6 Silent p.A3611A 0.38 TCGA-2Z-A9JS-01 2 61415050 61415050 T C AHSA2 3'UTR 0.42 TCGA-2Z-A9JS-01 2 68479274 68479274 C A PPP3R1 5'UTR 0.42 TCGA-2Z-A9JS-01 3 13525048 13525048 A C HDAC11 Missense_Mutation p.Y79S 0.75 deleterious(0) probably_damaging(1) TCGA-2Z-A9JS-01 3 3095549 3095549 C A CNTN4 Nonsense_Mutation p.S957* 0.87 TCGA-2Z-A9JS-01 3 36779124 36779124 G A DCLK3 Missense_Mutation p.R343W 0.09 deleterious(0) probably_damaging(0.937) TCGA-2Z-A9JS-01 3 42594897 42594897 A G SEC22C Missense_Mutation p.V252A 0.86 tolerated(0.84) benign(0.01) TCGA-2Z-A9JS-01 3 48718979 48718979 G C NCKIPSD Missense_Mutation p.T278S 0.82 tolerated(0.79) benign(0.008) TCGA-2Z-A9JS-01 3 49939890 49939890 A G MST1R Missense_Mutation p.C385R 0.87 deleterious(0) probably_damaging(1) TCGA-2Z-A9JS-01 4 154523827 154523827 C T KIAA0922 Missense_Mutation p.P863S 0.48 deleterious(0) probably_damaging(1) TCGA-2Z-A9JS-01 4 178354476 178354476 T A AGA Nonsense_Mutation p.R278* 0.38 TCGA-2Z-A9JS-01 4 187539964 187539964 A G FAT1 Silent p.N2592N 0.39 TCGA-2Z-A9JS-01 4 85716133 85716133 C T WDFY3 Splice_Site p.X1056_splice 0.35 TCGA-2Z-A9JS-01 4 86916381 86916381 A C ARHGAP24 Missense_Mutation p.Q525P 0.39 tolerated(0.05) possibly_damaging(0.877) TCGA-2Z-A9JS-01 5 114860326 114860326 A G FEM1C Silent p.T511T 0.40 TCGA-2Z-A9JS-01 5 131606622 131606622 A - PDLIM4 Frame_Shift_Del p.T115Pfs*45 0.30 TCGA-2Z-A9JS-01 5 1338066 1338066 G A CLPTM1L Missense_Mutation p.P211S 0.34 deleterious(0) probably_damaging(0.99) TCGA-2Z-A9JS-01 5 137502237 137502237 C T BRD8 Missense_Mutation p.A323T 0.06 tolerated(0.52) benign(0.304) TCGA-2Z-A9JS-01 5 176084771 176084771 G T TSPAN17 3'UTR 0.06 TCGA-2Z-A9JS-01 5 34757673 34757673 C T RAI14 Missense_Mutation p.A49V 0.45 deleterious(0.04) probably_damaging(0.947) TCGA-2Z-A9JS-01 5 79034827 79034827 T A CMYA5 Silent p.R3413R 0.42 TCGA-2Z-A9JS-01 5 79854839 79854839 G T ANKRD34B Missense_Mutation p.Q334K 0.53 tolerated(0.97) benign(0.021) TCGA-2Z-A9JS-01 5 95119657 95119657 A C RHOBTB3 Missense_Mutation p.K538T 0.27 tolerated(0.09) benign(0.013) TCGA-2Z-A9JS-01 5 95761539 95761539 A G PCSK1 Silent p.N127N 0.33 TCGA-2Z-A9JS-01 6 108492734 108492734 G A NR2E1 Missense_Mutation p.C33Y 0.33 deleterious(0) probably_damaging(0.989) TCGA-2Z-A9JS-01 6 128134425 128134425 C T THEMIS Missense_Mutation p.R454H 0.42 tolerated(0.33) benign(0.006) TCGA-2Z-A9JS-01 6 26637490 26637490 A - ZNF322 3'UTR 0.16 TCGA-2Z-A9JS-01 6 31632106 31632106 A G GPANK1 Silent p.D50D 0.34 TCGA-2Z-A9JS-01 6 32168924 32168937 AGGGGCTGCGTTTG - NOTCH4 Frame_Shift_Del p.Q1366Gfs*25 0.24 TCGA-2Z-A9JS-01 6 33168730 33168730 T - SLC39A7 5'UTR 0.31 TCGA-2Z-A9JS-01 6 33262758 33262758 C - RGL2 Frame_Shift_Del p.G425Vfs*12 0.28 TCGA-2Z-A9JS-01 6 39824224 39824224 A G DAAM2 Missense_Mutation p.N49S 0.37 deleterious(0.02) possibly_damaging(0.817) TCGA-2Z-A9JS-01 6 43581692 43581692 T C POLH Missense_Mutation p.S514P 0.39 tolerated(0.18) benign(0.004) TCGA-2Z-A9JS-01 6 86303311 86303311 G T SNX14 Silent p.S42S 0.40 TCGA-2Z-A9JS-01 7 106685477 106685477 A C PRKAR2B Missense_Mutation p.E42A 0.68 tolerated(0.75) benign(0.01) TCGA-2Z-A9JS-01 7 128323254 128323254 G C FAM71F2 3'UTR 0.23 TCGA-2Z-A9JS-01 7 142480020 142480020 C - PRSS3P2 RNA 0.25 TCGA-2Z-A9JS-01 7 29135788 29135788 G T CPVL Missense_Mutation p.P112T 0.53 deleterious(0) probably_damaging(1) TCGA-2Z-A9JS-01 7 44156052 44156052 C T POLD2 Missense_Mutation p.D280N 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-2Z-A9JS-01 7 6370867 6370869 CTA TT FAM220A Splice_Site 0.21 TCGA-2Z-A9JS-01 7 73470631 73470631 T - ELN Frame_Shift_Del p.P395Lfs*79 0.32 TCGA-2Z-A9JS-01 7 959664 959664 C T ADAP1 Missense_Mutation p.R110Q 0.10 deleterious(0) probably_damaging(0.95) TCGA-2Z-A9JS-01 8 52412274 52412274 A - PXDNL Frame_Shift_Del p.L146Rfs*3 0.34 TCGA-2Z-A9JS-01 8 7717896 7717896 G T SPAG11A Intron 0.42 TCGA-2Z-A9JS-01 9 113212406 113212406 C T SVEP1 Missense_Mutation p.V1346I 0.45 benign(0.001) TCGA-2Z-A9JS-01 9 123954485 123954485 T A RAB14 Nonsense_Mutation p.K24* 0.46 TCGA-2Z-A9JS-01 9 125642900 125642900 T C RC3H2 Silent p.K311K 0.14 TCGA-2Z-A9JS-01 9 137694764 137694764 G T COL5A1 Nonsense_Mutation p.E1013* 0.45 TCGA-2Z-A9JS-01 9 138011750 138011750 C T OLFM1 Missense_Mutation p.T377M 0.38 deleterious(0) probably_damaging(0.981) TCGA-2Z-A9JS-01 9 139333176 139333176 G T INPP5E Missense_Mutation p.S232R 0.37 tolerated(0.21) benign(0.077) TCGA-2Z-A9JS-01 9 74586475 74586475 A G C9orf85 Silent p.P88P 0.30 TCGA-2Z-A9JT-01 10 101595920 101595920 T C ABCC2 Missense_Mutation p.F1163L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-2Z-A9JT-01 10 103343263 103343263 A C POLL Splice_Site p.X355_splice 0.25 TCGA-2Z-A9JT-01 10 29760115 29760115 T C SVIL Missense_Mutation p.M1863V 0.27 deleterious(0) possibly_damaging(0.906) TCGA-2Z-A9JT-01 10 63422752 63422752 T - C10orf107 5'UTR 0.11 TCGA-2Z-A9JT-01 11 125787115 125787115 T A DDX25 Missense_Mutation p.I336N 0.23 deleterious(0) possibly_damaging(0.786) TCGA-2Z-A9JT-01 11 128786804 128786804 A G KCNJ5 3'UTR 0.30 TCGA-2Z-A9JT-01 11 35456322 35456326 GGAGC - PAMR1 Frame_Shift_Del p.A471Kfs*22 0.25 TCGA-2Z-A9JT-01 11 44129501 44129501 G - EXT2 Frame_Shift_Del p.D115Ifs*30 0.23 TCGA-2Z-A9JT-01 11 502204 502204 A T RNH1 5'UTR 0.37 TCGA-2Z-A9JT-01 11 64621982 64621982 G T EHD1 Silent p.L476L 0.19 TCGA-2Z-A9JT-01 11 67205744 67205744 C A CORO1B 3'UTR 0.42 TCGA-2Z-A9JT-01 11 68305152 68305152 T C PPP6R3 Missense_Mutation p.L7P 0.26 deleterious(0) probably_damaging(0.976) TCGA-2Z-A9JT-01 11 89537607 89537607 C T TRIM49 Missense_Mutation p.G11R 0.15 tolerated(0.64) benign(0.001) TCGA-2Z-A9JT-01 12 116453057 116453057 A G MED13L Silent p.S344S 0.44 TCGA-2Z-A9JT-01 12 120660781 120660781 T G PXN Silent p.S126S 0.27 TCGA-2Z-A9JT-01 12 123075197 123075201 ACTGC - KNTC1 Frame_Shift_Del p.C1349Sfs*9 0.34 TCGA-2Z-A9JT-01 12 369149 369149 T C SLC6A13 Missense_Mutation p.K24E 0.51 tolerated(1) benign(0) TCGA-2Z-A9JT-01 12 56397604 56397604 A T SUOX Missense_Mutation p.N144I 0.42 deleterious(0.01) benign(0.148) TCGA-2Z-A9JT-01 12 6494235 6494235 G A LTBR Missense_Mutation p.A81T 0.23 tolerated(0.47) benign(0.013) TCGA-2Z-A9JT-01 12 69140127 69140127 G A SLC35E3 5'UTR 0.29 TCGA-2Z-A9JT-01 12 6955037 6955038 AC - CDCA3 3'Flank 0.30 TCGA-2Z-A9JT-01 12 72167772 72167772 T C RAB21 Silent p.L121L 0.51 TCGA-2Z-A9JT-01 12 7351609 7351609 C A PEX5 Missense_Mutation p.P166T 0.45 tolerated(0.34) possibly_damaging(0.493) TCGA-2Z-A9JT-01 12 76462722 76462722 C A NAP1L1 Nonsense_Mutation p.E24* 0.44 TCGA-2Z-A9JT-01 12 95475228 95475228 A G FGD6 3'UTR 0.23 TCGA-2Z-A9JT-01 13 102047671 102047671 A - NALCN Frame_Shift_Del p.S52Lfs*4 0.19 TCGA-2Z-A9JT-01 14 62567493 62567493 G T SYT16 3'UTR 0.27 TCGA-2Z-A9JT-01 14 81952633 81952633 T C SEL1L Missense_Mutation p.R600G 0.37 tolerated(0.64) benign(0) TCGA-2Z-A9JT-01 14 97031521 97031521 T C PAPOLA 3'UTR 0.22 TCGA-2Z-A9JT-01 15 41804906 41804906 G A LTK Silent p.L120L 0.31 TCGA-2Z-A9JT-01 15 77346601 77346612 GCGATCAACCTC TCG TSPAN3 In_Frame_Del p.E114_D116del 0.25 TCGA-2Z-A9JT-01 16 2053710 2053710 A G ZNF598 Missense_Mutation p.L81P 0.31 possibly_damaging(0.496) TCGA-2Z-A9JT-01 16 28914368 28914368 C T ATP2A1 Missense_Mutation p.S921F 0.26 deleterious(0) probably_damaging(1) TCGA-2Z-A9JT-01 16 5075564 5075564 T A NAGPA Missense_Mutation p.Y488F 0.46 probably_damaging(0.998) TCGA-2Z-A9JT-01 16 55364376 55364376 G A IRX6 3'UTR 0.20 TCGA-2Z-A9JT-01 16 89753150 89753150 T C CDK10 Missense_Mutation p.I11T 0.18 tolerated(0.12) benign(0.002) TCGA-2Z-A9JT-01 16 90141322 90141322 A T PRDM7 Splice_Site p.X101_splice 0.22 TCGA-2Z-A9JT-01 17 29687644 29687644 A G NF1 Missense_Mutation p.Q2767R 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-2Z-A9JT-01 17 3336754 3336754 A G OR1E2 Missense_Mutation p.F128L 0.45 tolerated(0.17) benign(0.009) TCGA-2Z-A9JT-01 17 3563642 3563642 G A CTNS Silent p.P361P 0.55 TCGA-2Z-A9JT-01 17 67146187 67146187 G A ABCA10 Missense_Mutation p.A1472V 0.21 tolerated(1) benign(0.004) TCGA-2Z-A9JT-01 17 7256855 7256855 G T KCTD11 Missense_Mutation p.E198D 0.22 deleterious(0.02) probably_damaging(0.978) TCGA-2Z-A9JT-01 17 74729620 74729620 A C METTL23 Missense_Mutation p.E142A 0.46 deleterious(0.02) benign(0.177) TCGA-2Z-A9JT-01 17 80789569 80789569 G C ZNF750 Silent p.T254T 0.28 TCGA-2Z-A9JT-01 18 3067525 3067525 C G MYOM1 Missense_Mutation p.G1598A 0.29 deleterious(0) probably_damaging(1) TCGA-2Z-A9JT-01 18 31325189 31325189 G C ASXL3 Missense_Mutation p.E1793Q 0.36 benign(0.022) TCGA-2Z-A9JT-01 18 77440069 77440069 C T CTDP1 Missense_Mutation p.A41V 0.50 tolerated(0.23) benign(0.436) TCGA-2Z-A9JT-01 19 1051189 1051189 G T ABCA7 Missense_Mutation p.R907L 0.23 tolerated(0.16) possibly_damaging(0.827) TCGA-2Z-A9JT-01 19 55175397 55175397 C T LILRB4 Missense_Mutation p.P86S 0.24 tolerated(0.23) benign(0.027) TCGA-2Z-A9JT-01 19 58850450 58850450 G A ZSCAN22 Missense_Mutation p.A412T 0.07 tolerated(0.39) benign(0.015) TCGA-2Z-A9JT-01 19 810809 810810 - C PTBP1 Frame_Shift_Ins p.K554Qfs*28 0.16 TCGA-2Z-A9JT-01 19 8130912 8130912 C T FBN3 Missense_Mutation p.R2774Q 0.38 tolerated(1) benign(0.001) TCGA-2Z-A9JT-01 1 110168296 110168296 C T AMPD2 Missense_Mutation p.R133C 0.06 deleterious(0.02) possibly_damaging(0.852) TCGA-2Z-A9JT-01 1 119935262 119935263 GT - HAO2 Frame_Shift_Del p.V318Ffs*7 0.18 TCGA-2Z-A9JT-01 1 145536864 145536864 T G ITGA10 Missense_Mutation p.D748E 0.28 deleterious(0) probably_damaging(0.988) TCGA-2Z-A9JT-01 1 179834169 179834169 T C IFRG15 Missense_Mutation p.Y48C 0.30 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-2Z-A9JT-01 1 181021439 181021439 C T MR1 Missense_Mutation p.H225Y 0.28 tolerated(0.33) benign(0.004) TCGA-2Z-A9JT-01 1 29638041 29638041 C A PTPRU Silent p.I987I 0.20 TCGA-2Z-A9JT-01 1 45811638 45811638 A C TESK2 Missense_Mutation p.V303G 0.21 tolerated(0.37) benign(0.063) TCGA-2Z-A9JT-01 20 34327078 34327078 T A RBM39 Intron 0.17 TCGA-2Z-A9JT-01 20 43029932 43029932 G A HNF4A 5'UTR 0.41 TCGA-2Z-A9JT-01 21 34926409 34926409 T C SON Silent p.N1624N 0.58 TCGA-2Z-A9JT-01 21 43176834 43176834 C A RIPK4 Missense_Mutation p.A109S 0.45 tolerated(0.2) benign(0.03) TCGA-2Z-A9JT-01 22 18383762 18383762 C - MICAL3 Frame_Shift_Del p.R233Vfs*46 0.20 TCGA-2Z-A9JT-01 22 41616759 41616759 A G L3MBTL2 Missense_Mutation p.Y247C 0.27 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JT-01 22 50860699 50860699 G A PPP6R2 Missense_Mutation p.D289N 0.22 deleterious(0.03) benign(0.108) TCGA-2Z-A9JT-01 2 128774008 128774008 G T SAP130 Silent p.I180I 0.25 TCGA-2Z-A9JT-01 2 170063527 170063532 TGACAA - LRP2 In_Frame_Del p.I2233_V2234del 0.25 TCGA-2Z-A9JT-01 2 37501808 37501808 A T PRKD3 Silent p.S469S 0.28 TCGA-2Z-A9JT-01 2 70931469 70931469 G A ADD2 Silent p.F102F 0.23 TCGA-2Z-A9JT-01 2 97428100 97428100 A G CNNM4 Missense_Mutation p.D455G 0.30 deleterious(0) possibly_damaging(0.759) TCGA-2Z-A9JT-01 3 128974927 128974927 G A COPG1 Missense_Mutation p.S170N 0.27 tolerated(0.64) benign(0.012) TCGA-2Z-A9JT-01 3 170079027 170079027 T C SKIL Missense_Mutation p.F303S 0.31 deleterious(0) probably_damaging(1) TCGA-2Z-A9JT-01 3 184062561 184062561 C G FAM131A Missense_Mutation p.Q302E 0.24 tolerated(0.3) possibly_damaging(0.764) TCGA-2Z-A9JT-01 3 65425621 65425622 CT - MAGI1 Frame_Shift_Del p.E401Afs*64 0.31 TCGA-2Z-A9JT-01 4 3446365 3446365 C A HGFAC Missense_Mutation p.P249H 0.16 deleterious(0) probably_damaging(0.993) TCGA-2Z-A9JT-01 4 52861855 52861855 C T LRRC66 Missense_Mutation p.V445I 0.25 deleterious(0.04) benign(0.005) TCGA-2Z-A9JT-01 4 72649832 72649832 C T GC Intron 0.31 TCGA-2Z-A9JT-01 4 85642588 85642588 G T WDFY3 Missense_Mutation p.L2527M 0.21 deleterious(0.02) possibly_damaging(0.881) TCGA-2Z-A9JT-01 5 115782689 115782689 C G SEMA6A Missense_Mutation p.E905Q 0.35 deleterious(0.04) possibly_damaging(0.533) TCGA-2Z-A9JT-01 5 118480323 118480323 A G DMXL1 Silent p.L853L 0.33 TCGA-2Z-A9JT-01 5 139919000 139919001 - T ANKHD1 Intron 0.18 TCGA-2Z-A9JT-01 5 140019043 140019043 G A TMCO6 5'UTR 0.38 TCGA-2Z-A9JT-01 5 149279060 149279060 T G PDE6A Missense_Mutation p.M381L 0.34 tolerated(0.35) benign(0.001) TCGA-2Z-A9JT-01 5 19839151 19839151 G A CDH18 5'UTR 0.27 TCGA-2Z-A9JT-01 5 54965109 54965109 C G SLC38A9 Missense_Mutation p.G158A 0.27 tolerated(0.47) benign(0.336) TCGA-2Z-A9JT-01 5 86665669 86665669 A G RASA1 Silent p.E550E 0.33 TCGA-2Z-A9JT-01 6 144843189 144843189 A G UTRN Missense_Mutation p.Y1872C 0.29 deleterious(0) probably_damaging(0.999) TCGA-2Z-A9JT-01 6 32809403 32809403 C A PSMB8 Missense_Mutation p.R216L 0.32 deleterious(0.01) benign(0.208) TCGA-2Z-A9JT-01 6 33283498 33283498 G T ZBTB22 Nonsense_Mutation p.S399* 0.33 TCGA-2Z-A9JT-01 6 7189549 7189549 T C RREB1 Missense_Mutation p.M140T 0.27 deleterious(0) probably_damaging(0.948) TCGA-2Z-A9JT-01 7 101063371 101063371 A G COL26A1 Missense_Mutation p.N91S 0.07 tolerated(0.2) benign(0.113) TCGA-2Z-A9JT-01 7 150068585 150068585 G A REPIN1 Silent p.L142L 0.52 TCGA-2Z-A9JT-01 7 150778670 150778670 A G TMUB1 Missense_Mutation p.L236P 0.22 deleterious(0) probably_damaging(0.997) TCGA-2Z-A9JT-01 7 150820088 150820088 C G AGAP3 Intron 0.33 TCGA-2Z-A9JT-01 7 2581812 2581812 G C BRAT1 Silent p.V319V 0.49 TCGA-2Z-A9JT-01 7 39610143 39610143 T C YAE1D1 Silent p.V56V 0.45 TCGA-2Z-A9JT-01 7 3990660 3990660 G T SDK1 Missense_Mutation p.S318I 0.39 deleterious(0) benign(0.276) TCGA-2Z-A9JT-01 7 56130827 56130827 G T CCT6A 3'UTR 0.33 TCGA-2Z-A9JT-01 7 71177223 71177223 G C WBSCR17 3'UTR 0.33 TCGA-2Z-A9JT-01 7 99725518 99725518 C G MBLAC1 Missense_Mutation p.P167R 0.48 deleterious(0) probably_damaging(1) TCGA-2Z-A9JT-01 8 104068108 104068109 CG - ATP6V1C1 Frame_Shift_Del p.N195Kfs*4 0.23 TCGA-2Z-A9JT-01 8 28669861 28669861 G A INTS9 Missense_Mutation p.L243F 0.32 tolerated(0.17) benign(0.169) TCGA-2Z-A9JT-01 8 48352889 48352889 A - SPIDR Frame_Shift_Del p.K295Nfs*5 0.26 TCGA-2Z-A9JT-01 8 67546979 67546979 T C VCPIP1 Silent p.E1142E 0.33 TCGA-2Z-A9JT-01 9 129646556 129646556 G A ZBTB34 3'UTR 0.28 TCGA-2Z-A9JT-01 9 131102964 131102964 C T SLC27A4 5'Flank 0.31 TCGA-2Z-A9JT-01 9 34256932 34256932 G - KIF24 Frame_Shift_Del p.W892Gfs*8 0.22 TCGA-2Z-A9JT-01 9 74975669 74975669 G T ZFAND5 Missense_Mutation p.P9Q 0.22 tolerated(1) benign(0.02) TCGA-2Z-A9JT-01 9 78936460 78936460 A C PCSK5 Missense_Mutation p.Q1309P 0.42 tolerated(0.33) benign(0.081) TCGA-2Z-A9JT-01 X 100650336 100650336 A G RPL36A Missense_Mutation p.K100R 0.68 deleterious(0.01) probably_damaging(0.964) TCGA-2Z-A9JT-01 X 134715577 134715585 GAAAAAAAT - DDX26B 3'UTR 0.55 TCGA-4A-A93W-01 10 75156296 75156296 T G ANXA7 Missense_Mutation p.Q139P 0.41 tolerated(0.26) benign(0.005) TCGA-4A-A93W-01 11 108811195 108811195 G A DDX10 3'UTR 0.52 TCGA-4A-A93W-01 11 133805518 133805518 C T IGSF9B Missense_Mutation p.V321M 0.30 deleterious(0) probably_damaging(0.999) TCGA-4A-A93W-01 11 244701 244701 C G PSMD13 Missense_Mutation p.I114M 0.40 deleterious(0.01) probably_damaging(0.986) TCGA-4A-A93W-01 11 31531372 31531372 C G ELP4 Missense_Mutation p.T14S 0.51 tolerated_low_confidence(1) benign(0.001) TCGA-4A-A93W-01 11 4929473 4929473 T A OR51A7 Missense_Mutation p.C292S 0.41 tolerated(1) benign(0.008) TCGA-4A-A93W-01 11 55136340 55136347 GAAACTTT TTTG OR4A15 Frame_Shift_Del p.R327Sfs*7 0.12 TCGA-4A-A93W-01 11 61507009 61507009 C A DAGLA Missense_Mutation p.L577M 0.48 tolerated(0.16) benign(0.075) TCGA-4A-A93W-01 11 62432403 62432403 G A C11orf48 Missense_Mutation p.S194L 0.38 tolerated_low_confidence(0.09) possibly_damaging(0.776) TCGA-4A-A93W-01 11 62474607 62474607 G A BSCL2 Nonsense_Mutation p.Q21* 0.43 TCGA-4A-A93W-01 11 66083364 66083364 C T CD248 Missense_Mutation p.D379N 0.50 deleterious(0.04) benign(0.086) TCGA-4A-A93W-01 11 70803580 70803580 G C SHANK2 Missense_Mutation p.P267R 0.33 deleterious(0) probably_damaging(1) TCGA-4A-A93W-01 12 113312955 113312955 C T RPH3A Missense_Mutation p.P288L 0.05 tolerated(0.16) benign(0.071) TCGA-4A-A93W-01 12 54422675 54422675 C A HOXC6 Missense_Mutation p.P124T 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-4A-A93W-01 12 54675281 54675282 TG - HNRNPA1 Frame_Shift_Del p.V44Gfs*69 0.33 TCGA-4A-A93W-01 12 56511373 56511373 T C RPL41 3'UTR 0.35 TCGA-4A-A93W-01 12 57871296 57871296 A C ARHGAP9 Missense_Mutation p.N234K 0.41 tolerated(0.06) benign(0.026) TCGA-4A-A93W-01 12 70209329 70209329 T G RAB3IP 3'UTR 0.54 TCGA-4A-A93W-01 12 72288635 72288635 A G TBC1D15 Missense_Mutation p.E293G 0.03 deleterious(0.01) possibly_damaging(0.802) TCGA-4A-A93W-01 12 75874545 75874545 A C GLIPR1 5'UTR 0.49 TCGA-4A-A93W-01 12 78562567 78562567 T G NAV3 Missense_Mutation p.I1634M 0.41 deleterious(0) probably_damaging(0.915) TCGA-4A-A93W-01 13 36744692 36744692 C T SOHLH2 Silent p.T488T 0.47 TCGA-4A-A93W-01 13 42733507 42733507 G A DGKH Missense_Mutation p.G243D 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-4A-A93W-01 13 77642846 77642846 A C MYCBP2 Missense_Mutation p.S3971A 0.40 possibly_damaging(0.869) TCGA-4A-A93W-01 14 104206573 104206573 T A PPP1R13B Missense_Mutation p.Y727F 0.50 deleterious(0) probably_damaging(0.997) TCGA-4A-A93W-01 14 104559866 104559866 T A ASPG Missense_Mutation p.L77Q 0.35 deleterious(0.03) probably_damaging(0.965) TCGA-4A-A93W-01 14 24868618 24868618 G T NYNRIN Nonsense_Mutation p.E56* 0.44 TCGA-4A-A93W-01 14 73987625 73987625 G T HEATR4 Missense_Mutation p.Q334K 0.37 tolerated(0.21) benign(0.421) TCGA-4A-A93W-01 15 42114511 42114511 G A MAPKBP1 Silent p.E1046E 0.45 TCGA-4A-A93W-01 15 65158077 65158077 G - PLEKHO2 Frame_Shift_Del p.S488Mfs*117 0.45 TCGA-4A-A93W-01 15 65676599 65676599 G T IGDCC4 Silent p.I1167I 0.38 TCGA-4A-A93W-01 15 83428118 83428118 T - FSD2 Frame_Shift_Del p.K744Nfs*10 0.34 TCGA-4A-A93W-01 15 91185433 91185433 A G CRTC3 3'UTR 0.42 TCGA-4A-A93W-01 16 20498005 20498005 T C ACSM2A 3'UTR 0.43 TCGA-4A-A93W-01 16 24801496 24801496 G A TNRC6A Silent p.E511E 0.36 TCGA-4A-A93W-01 16 58714134 58714134 A T SLC38A7 5'UTR 0.62 TCGA-4A-A93W-01 16 67233133 67233133 A G ELMO3 Silent p.G21G 0.34 TCGA-4A-A93W-01 16 734812 734812 G T WDR24 Missense_Mutation p.H765Q 0.53 deleterious(0) probably_damaging(0.999) TCGA-4A-A93W-01 16 85012877 85012877 C - ZDHHC7 Frame_Shift_Del p.C189Lfs*12 0.29 TCGA-4A-A93W-01 16 87724046 87724046 G T JPH3 Missense_Mutation p.D694Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-4A-A93W-01 16 89348979 89348979 G A ANKRD11 Missense_Mutation p.S1324F 0.51 possibly_damaging(0.766) TCGA-4A-A93W-01 17 19581806 19581806 C A SLC47A2 3'UTR 0.32 TCGA-4A-A93W-01 17 39780421 39780421 A G KRT17 Missense_Mutation p.V114A 0.28 tolerated(0.11) benign(0.033) TCGA-4A-A93W-01 17 42249482 42249482 A C ASB16 Missense_Mutation p.T124P 0.66 deleterious(0.01) benign(0.297) TCGA-4A-A93W-01 17 5086715 5086715 A T ZNF594 Missense_Mutation p.S279R 0.68 tolerated(0.42) probably_damaging(0.986) TCGA-4A-A93W-01 18 21761235 21761235 G T OSBPL1A Silent p.S562S 0.45 TCGA-4A-A93W-01 18 67992862 67992862 A T SOCS6 Missense_Mutation p.N320Y 0.41 deleterious(0.03) benign(0.068) TCGA-4A-A93W-01 19 1802569 1802569 T A ATP8B3 Missense_Mutation p.Y327F 0.52 tolerated(0.12) benign(0.271) TCGA-4A-A93W-01 19 38631838 38631838 C G SIPA1L3 Missense_Mutation p.T1053S 0.50 tolerated(0.55) benign(0.001) TCGA-4A-A93W-01 19 3905489 3905489 C - ATCAY Frame_Shift_Del p.P66Qfs*92 0.27 TCGA-4A-A93W-01 19 39435737 39435737 C A CTC-360G5.8 Missense_Mutation p.A94S 0.37 tolerated_low_confidence(0.16) benign(0.024) TCGA-4A-A93W-01 19 41306764 41306764 C T EGLN2 Missense_Mutation p.A96V 0.51 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-4A-A93W-01 19 41703754 41703754 G C CYP2S1 Silent p.L138L 0.29 TCGA-4A-A93W-01 19 4896717 4896717 C A ARRDC5 Missense_Mutation p.G156V 0.52 deleterious(0.03) probably_damaging(0.966) TCGA-4A-A93W-01 19 52400157 52400157 C G ZNF649 Missense_Mutation p.K30N 0.37 deleterious(0) probably_damaging(0.987) TCGA-4A-A93W-01 19 56180949 56180949 A T U2AF2 Missense_Mutation p.Y395F 0.42 tolerated(0.05) possibly_damaging(0.45) TCGA-4A-A93W-01 19 5622915 5622915 C G SAFB2 5'UTR 0.71 TCGA-4A-A93W-01 19 57840518 57840518 C A ZNF543 Missense_Mutation p.T563N 0.05 tolerated(0.19) benign(0.096) TCGA-4A-A93W-01 1 10177640 10177640 G C UBE4B Missense_Mutation p.E440D 0.43 deleterious(0.01) possibly_damaging(0.659) TCGA-4A-A93W-01 1 117209006 117209006 C A IGSF3 5'UTR 0.53 TCGA-4A-A93W-01 1 11854812 11854812 C T MTHFR Silent p.E380E 0.35 TCGA-4A-A93W-01 1 153507304 153507304 C T S100A6 Silent p.K47K 0.53 TCGA-4A-A93W-01 1 153749618 153749618 G T SLC27A3 Nonsense_Mutation p.E367* 0.40 TCGA-4A-A93W-01 1 153750753 153750753 A G SLC27A3 Silent p.G473G 0.06 TCGA-4A-A93W-01 1 154180025 154180025 T G C1orf43 Silent p.T222T 0.36 TCGA-4A-A93W-01 1 155035158 155035158 G C ADAM15 3'UTR 0.46 TCGA-4A-A93W-01 1 155646420 155646420 A C YY1AP1 Silent p.V219V 0.08 TCGA-4A-A93W-01 1 15627701 15627701 G T FHAD1 5'Flank 0.48 TCGA-4A-A93W-01 1 180235629 180235629 C A LHX4 Nonsense_Mutation p.C117* 0.45 TCGA-4A-A93W-01 1 216017818 216017818 G T USH2A Missense_Mutation p.P3026T 0.45 possibly_damaging(0.889) TCGA-4A-A93W-01 1 220267580 220267580 C T IARS2 Missense_Mutation p.R8C 0.25 tolerated_low_confidence(0.11) benign(0.001) TCGA-4A-A93W-01 1 223285550 223285550 T A TLR5 Missense_Mutation p.K275I 0.41 deleterious(0) possibly_damaging(0.765) TCGA-4A-A93W-01 1 22828076 22828076 C A ZBTB40 Missense_Mutation p.T308N 0.40 deleterious(0) benign(0) TCGA-4A-A93W-01 1 237713903 237713903 C A RYR2 Silent p.T1042T 0.44 TCGA-4A-A93W-01 1 2518720 2518720 A T FAM213B Missense_Mutation p.D115V 0.52 deleterious(0.02) benign(0.01) TCGA-4A-A93W-01 1 27689486 27689486 T - MAP3K6 Frame_Shift_Del p.K333Rfs*56 0.28 TCGA-4A-A93W-01 20 21695396 21695396 C T PAX1 Silent p.F520F 0.67 TCGA-4A-A93W-01 20 36147647 36147647 G A BLCAP 5'UTR 0.05 TCGA-4A-A93W-01 20 40790019 40790019 C G PTPRT Missense_Mutation p.Q885H 0.32 deleterious(0) benign(0.103) TCGA-4A-A93W-01 20 4167467 4167467 G C SMOX Intron 0.32 TCGA-4A-A93W-01 20 48129710 48129710 G A PTGIS Silent p.D371D 0.33 TCGA-4A-A93W-01 20 58415459 58415459 G A PHACTR3 Missense_Mutation p.E474K 0.25 deleterious(0) possibly_damaging(0.77) TCGA-4A-A93W-01 22 32555136 32555136 C T C22orf42 Missense_Mutation p.D23N 0.42 tolerated_low_confidence(0.5) possibly_damaging(0.728) TCGA-4A-A93W-01 22 38087326 38087326 C A NOL12 Silent p.R209R 0.44 TCGA-4A-A93W-01 2 10105481 10105481 T C GRHL1 Missense_Mutation p.F361L 0.43 deleterious(0) probably_damaging(0.927) TCGA-4A-A93W-01 2 10105483 10105483 C T GRHL1 Silent p.F361F 0.42 TCGA-4A-A93W-01 2 108999668 108999668 T C SULT1C4 Silent p.A171A 0.31 TCGA-4A-A93W-01 2 112767644 112767644 G C MERTK Splice_Site p.X693_splice 0.30 TCGA-4A-A93W-01 2 170592248 170592248 C T KLHL23 Nonsense_Mutation p.Q242* 0.45 TCGA-4A-A93W-01 2 171319897 171319898 - A MYO3B Frame_Shift_Ins p.R918Tfs*41 0.28 TCGA-4A-A93W-01 2 179506980 179506980 T G TTN Missense_Mutation p.E13514D 0.46 TCGA-4A-A93W-01 2 206921321 206921321 C G INO80D Missense_Mutation p.V189L 0.50 tolerated(0.29) benign(0.023) TCGA-4A-A93W-01 2 234343452 234343452 A T DGKD Missense_Mutation p.H164L 0.31 deleterious(0.02) possibly_damaging(0.582) TCGA-4A-A93W-01 2 25095499 25095499 G A ADCY3 Silent p.F255F 0.05 TCGA-4A-A93W-01 2 3518748 3518748 T A ADI1 Intron 0.64 TCGA-4A-A93W-01 3 100565235 100565237 TTC CT ABI3BP Frame_Shift_Del p.E526Rfs*2 0.29 TCGA-4A-A93W-01 3 128998566 128998566 G A HMCES 5'UTR 0.35 TCGA-4A-A93W-01 3 1424739 1424739 G A CNTN6 Silent p.R760R 0.33 TCGA-4A-A93W-01 3 145806425 145806425 A T PLOD2 Nonsense_Mutation p.L318* 0.44 TCGA-4A-A93W-01 3 170016826 170016826 C A PRKCI Missense_Mutation p.S544Y 0.49 deleterious(0.03) probably_damaging(0.996) TCGA-4A-A93W-01 3 179615950 179615950 G - PEX5L Frame_Shift_Del p.L60Sfs*4 0.30 TCGA-4A-A93W-01 3 45988986 45988986 G A CXCR6 Missense_Mutation p.S338N 0.36 tolerated(0.06) benign(0.016) TCGA-4A-A93W-01 3 52456291 52456291 A G PHF7 Missense_Mutation p.Y245C 0.38 deleterious(0) probably_damaging(0.962) TCGA-4A-A93W-01 3 52835082 52835082 T - ITIH3 Frame_Shift_Del p.F435Sfs*38 0.23 TCGA-4A-A93W-01 4 159592804 159592804 C T C4orf46 Silent p.V50V 0.45 TCGA-4A-A93W-01 4 170913146 170913146 C T MFAP3L Missense_Mutation p.A205T 0.37 deleterious(0) probably_damaging(0.999) TCGA-4A-A93W-01 4 76570421 76570421 T C G3BP2 3'UTR 0.70 TCGA-4A-A93W-01 5 10973430 10973430 T - CTNND2 3'UTR 0.43 TCGA-4A-A93W-01 5 176518791 176518791 T C FGFR4 Missense_Mutation p.Y237H 0.33 deleterious(0.01) probably_damaging(1) TCGA-4A-A93W-01 5 75427885 75427885 G C SV2C Missense_Mutation p.D104H 0.39 tolerated(0.08) possibly_damaging(0.717) TCGA-4A-A93W-01 5 88027620 88027620 A C MEF2C Missense_Mutation p.L264V 0.06 tolerated(0.1) benign(0.327) TCGA-4A-A93W-01 5 89949370 89949370 G C GPR98 Missense_Mutation p.A1327P 0.45 probably_damaging(0.975) TCGA-4A-A93W-01 6 28213691 28213692 GC - ZKSCAN4 Frame_Shift_Del p.H281Wfs*21 0.30 TCGA-4A-A93W-01 6 29943121 29943121 C A HCG9 RNA 0.47 TCGA-4A-A93W-01 7 100348313 100348313 A G ZAN Missense_Mutation p.S439G 0.32 probably_damaging(0.997) TCGA-4A-A93W-01 7 100849321 100849321 G A PLOD3 3'UTR 0.47 TCGA-4A-A93W-01 7 116417457 116417457 G A MET Missense_Mutation p.V1110I 0.61 deleterious(0) probably_damaging(0.984) TCGA-4A-A93W-01 7 138522523 138522523 T C KIAA1549 3'UTR 0.28 TCGA-4A-A93W-01 7 143956429 143956429 A G OR2A7 Missense_Mutation p.M98T 0.31 tolerated(1) benign(0) TCGA-4A-A93W-01 7 151879260 151879260 C T KMT2C Missense_Mutation p.M1895I 0.27 benign(0.001) TCGA-4A-A93W-01 7 156451243 156451243 A - RNF32 Frame_Shift_Del p.K223Nfs*35 0.35 TCGA-4A-A93W-01 7 208933 208933 A G FAM20C Missense_Mutation p.M274V 0.31 deleterious(0.03) benign(0.012) TCGA-4A-A93W-01 7 47451362 47451362 A T TNS3 Missense_Mutation p.V229D 0.64 deleterious(0) benign(0.102) TCGA-4A-A93W-01 7 5348868 5348868 G A TNRC18 Silent p.R2840R 0.03 TCGA-4A-A93W-01 7 99023210 99023210 T C ATP5J2-PTCD1 Silent p.L364L 0.52 TCGA-4A-A93W-01 8 22069171 22069171 T G BMP1 Missense_Mutation p.I964S 0.39 deleterious(0.01) possibly_damaging(0.734) TCGA-4A-A93W-01 8 32406092 32406092 A T NRG1 5'UTR 0.46 TCGA-4A-A93W-01 8 39842851 39842851 A G IDO2 Intron 0.46 TCGA-4A-A93W-01 8 56922657 56922657 G C LYN Missense_Mutation p.Q509H 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-4A-A93W-01 8 56922659 56922659 A T LYN Missense_Mutation p.Q510L 0.34 tolerated(0.14) benign(0.359) TCGA-4A-A93W-01 8 91055027 91055027 A C DECR1 Missense_Mutation p.K246T 0.45 deleterious(0.01) probably_damaging(0.987) TCGA-4A-A93W-01 8 94748429 94748429 C G RBM12B Missense_Mutation p.E70D 0.41 tolerated(0.12) probably_damaging(0.996) TCGA-4A-A93W-01 9 125612011 125612011 G C RC3H2 Silent p.T1157T 0.38 TCGA-4A-A93W-01 9 138515830 138515830 A - GLT6D1 3'UTR 0.27 TCGA-4A-A93W-01 9 32786876 32786876 A - TMEM215 3'UTR 0.31 TCGA-4A-A93W-01 9 34251536 34251536 G C UBAP1 3'UTR 0.07 TCGA-4A-A93W-01 X 102864302 102864302 G C TCEAL3 Missense_Mutation p.D104H 0.45 deleterious(0) probably_damaging(0.993) TCGA-4A-A93W-01 X 110489931 110489931 A G CAPN6 Silent p.A600A 0.05 TCGA-4A-A93W-01 X 128922424 128922424 A C SASH3 Silent p.S57S 0.09 TCGA-4A-A93W-01 X 50213280 50213280 G A DGKK RNA 0.30 TCGA-4A-A93W-01 X 53566667 53566667 C A HUWE1 Silent p.G3861G 0.48 TCGA-4A-A93W-01 X 75651091 75651091 G A MAGEE1 Missense_Mutation p.R923K 0.35 tolerated(0.29) probably_damaging(0.956) TCGA-4A-A93X-01 10 127411654 127411654 A T EDRF1 Missense_Mutation p.D112V 0.36 deleterious(0.05) possibly_damaging(0.558) TCGA-4A-A93X-01 10 23287144 23287145 - T ARMC3 Frame_Shift_Ins p.A416Cfs*54 0.39 TCGA-4A-A93X-01 10 3824256 3824257 - A KLF6 Frame_Shift_Ins p.P85Sfs*30 0.29 TCGA-4A-A93X-01 10 50725003 50725003 A T ERCC6-PGBD3 Missense_Mutation p.L521Q 0.26 deleterious_low_confidence(0) unknown(0) TCGA-4A-A93X-01 10 61718436 61718436 T G C10orf40 5'UTR 0.39 TCGA-4A-A93X-01 10 63170397 63170397 G T TMEM26 Missense_Mutation p.Q264K 0.62 deleterious(0.01) possibly_damaging(0.897) TCGA-4A-A93X-01 10 79579728 79579728 C G DLG5 Missense_Mutation p.E1151Q 0.22 tolerated(0.07) benign(0.085) TCGA-4A-A93X-01 10 97697946 97697946 G A C10orf131 Missense_Mutation p.G171S 0.61 deleterious_low_confidence(0.02) unknown(0) TCGA-4A-A93X-01 10 99968077 99968077 G C R3HCC1L Missense_Mutation p.R69P 0.13 tolerated(0.05) benign(0.002) TCGA-4A-A93X-01 11 118352545 118352545 G T KMT2A Missense_Mutation p.E1250D 0.48 benign(0.192) TCGA-4A-A93X-01 11 125769034 125769034 A C HYLS1 Intron 0.45 TCGA-4A-A93X-01 11 60703543 60703543 G T TMEM132A Nonsense_Mutation p.E747* 0.41 TCGA-4A-A93X-01 11 836787 836787 A C CD151 Missense_Mutation p.I99L 0.15 tolerated(1) benign(0.002) TCGA-4A-A93X-01 11 85966261 85966261 T C EED Intron 0.54 TCGA-4A-A93X-01 11 93754630 93754630 G T HEPHL1 Silent p.G32G 0.43 TCGA-4A-A93X-01 12 111893835 111893835 G T ATXN2 Missense_Mutation p.Q1248K 0.59 probably_damaging(0.983) TCGA-4A-A93X-01 12 113405314 113405314 C G OAS3 Missense_Mutation p.F927L 0.32 deleterious(0) probably_damaging(0.99) TCGA-4A-A93X-01 12 1192643 1192643 A C ERC1 Missense_Mutation p.E328A 0.35 tolerated(0.09) probably_damaging(0.963) TCGA-4A-A93X-01 12 12301888 12301888 T G LRP6 Missense_Mutation p.N1065T 0.69 deleterious(0.02) benign(0.325) TCGA-4A-A93X-01 12 124323139 124323140 - A DNAH10 Frame_Shift_Ins p.N1563Kfs*11 0.18 TCGA-4A-A93X-01 12 125396664 125396664 T G UBC Missense_Mutation p.S552R 0.37 deleterious(0.01) possibly_damaging(0.852) TCGA-4A-A93X-01 12 125396892 125396892 T G UBC Missense_Mutation p.S476R 0.26 deleterious(0) probably_damaging(0.914) TCGA-4A-A93X-01 12 125509745 125509745 C T BRI3BP Silent p.H175H 0.33 TCGA-4A-A93X-01 12 2162473 2162473 C T CACNA1C 5'Flank 0.88 TCGA-4A-A93X-01 12 6127970 6127970 C T VWF Silent p.T1538T 0.42 TCGA-4A-A93X-01 12 68551700 68551700 T G IFNG Missense_Mutation p.N120T 0.59 tolerated(0.11) benign(0.063) TCGA-4A-A93X-01 13 46288259 46288259 C T SPERT Nonsense_Mutation p.Q367* 0.46 TCGA-4A-A93X-01 13 51952390 51952390 A T INTS6 Silent p.V529V 0.50 TCGA-4A-A93X-01 14 102551272 102551273 - TTCT HSP90AA1 Frame_Shift_Ins p.E365Rfs*16 0.20 TCGA-4A-A93X-01 14 105406085 105406085 A T AHNAK2 Missense_Mutation p.F5235I 0.67 benign(0.207) TCGA-4A-A93X-01 14 22133777 22133777 T C OR4E2 Missense_Mutation p.F161L 0.29 tolerated(1) benign(0.008) TCGA-4A-A93X-01 14 89093338 89093338 T G EML5 Missense_Mutation p.E1528D 0.30 tolerated(0.09) benign(0.233) TCGA-4A-A93X-01 15 28912541 28912541 C G HERC2P9 RNA 0.70 TCGA-4A-A93X-01 15 41165894 41165894 G T RHOV Missense_Mutation p.D85E 0.11 deleterious(0) probably_damaging(0.997) TCGA-4A-A93X-01 15 55972249 55972249 T G PRTG Intron 0.50 TCGA-4A-A93X-01 15 57967233 57967233 G T GCOM1 Missense_Mutation p.R424I 0.41 deleterious(0) probably_damaging(0.981) TCGA-4A-A93X-01 16 2203146 2203146 G - RAB26 Splice_Site p.X198_splice 0.21 TCGA-4A-A93X-01 16 2814199 2814199 G T SRRM2 Nonsense_Mutation p.E1224* 0.59 TCGA-4A-A93X-01 16 70190605 70190606 - A PDPR Frame_Shift_Ins p.E822Rfs*20 0.11 TCGA-4A-A93X-01 16 715558 715558 G C WDR90 Intron 0.50 TCGA-4A-A93X-01 17 1543778 1543778 T C SCARF1 Missense_Mutation p.H325R 0.27 tolerated(0.23) benign(0.048) TCGA-4A-A93X-01 17 27943974 27943974 G A CORO6 Silent p.I280I 0.64 TCGA-4A-A93X-01 17 30932207 30932207 G A MYO1D Missense_Mutation p.T921M 0.07 tolerated(0.11) benign(0.104) TCGA-4A-A93X-01 17 35538175 35538175 T C ACACA Silent p.T1633T 0.59 TCGA-4A-A93X-01 17 37340296 37340296 G A CACNB1 Missense_Mutation p.R296C 0.66 deleterious(0) probably_damaging(0.999) TCGA-4A-A93X-01 17 41166392 41166392 A T IFI35 3'UTR 0.23 TCGA-4A-A93X-01 17 45916327 45916327 A C SCRN2 Missense_Mutation p.I201S 0.60 deleterious(0) probably_damaging(0.939) TCGA-4A-A93X-01 17 48827997 48827998 - T LUC7L3 Frame_Shift_Ins p.E426* 0.22 TCGA-4A-A93X-01 17 66915445 66915445 T G ABCA8 Missense_Mutation p.K595N 0.28 tolerated(0.09) benign(0.008) TCGA-4A-A93X-01 17 7142600 7142600 G T PHF23 5'UTR 0.54 TCGA-4A-A93X-01 17 7142601 7142601 C A PHF23 5'UTR 0.51 TCGA-4A-A93X-01 17 73832109 73832109 C - UNC13D Frame_Shift_Del p.D510Tfs*38 0.26 TCGA-4A-A93X-01 17 74391863 74391863 C T UBE2O Silent p.A963A 0.35 TCGA-4A-A93X-01 19 10945735 10945735 T C TMED1 Missense_Mutation p.I114V 0.28 tolerated(0.41) benign(0.173) TCGA-4A-A93X-01 19 23836072 23836072 T G ZNF675 Missense_Mutation p.K555Q 0.67 tolerated(0.05) probably_damaging(0.987) TCGA-4A-A93X-01 19 2877861 2877861 T C ZNF556 Missense_Mutation p.F302S 0.58 deleterious(0) probably_damaging(0.968) TCGA-4A-A93X-01 19 39923961 39923961 C G RPS16 Missense_Mutation p.K131N 0.64 deleterious(0.02) possibly_damaging(0.464) TCGA-4A-A93X-01 19 41072264 41072264 C T SPTBN4 Missense_Mutation p.T2112M 0.57 deleterious(0.02) probably_damaging(0.97) TCGA-4A-A93X-01 19 41928639 41928639 A T BCKDHA Missense_Mutation p.E320V 0.43 deleterious(0) possibly_damaging(0.515) TCGA-4A-A93X-01 19 48205408 48205408 G A GLTSCR1 Silent p.K1473K 0.67 TCGA-4A-A93X-01 19 52570490 52570491 - T ZNF841 Frame_Shift_Ins p.N215Kfs*2 0.19 TCGA-4A-A93X-01 19 7623951 7623951 G T PNPLA6 Missense_Mutation p.V1215F 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-4A-A93X-01 19 991092 991092 G A WDR18 Silent p.R251R 0.60 TCGA-4A-A93X-01 1 159277544 159277544 G A FCER1A Missense_Mutation p.R199H 0.05 tolerated(0.13) benign(0) TCGA-4A-A93X-01 1 2116880 2116880 T A C1orf86 3'Flank 0.88 TCGA-4A-A93X-01 1 27431977 27431977 C T SLC9A1 Intron 0.39 TCGA-4A-A93X-01 1 70819813 70819813 G A ANKRD13C Silent p.A93A 0.86 TCGA-4A-A93X-01 20 22563153 22563153 G A FOXA2 Missense_Mutation p.P243S 0.48 deleterious(0) probably_damaging(1) TCGA-4A-A93X-01 20 47648608 47648608 T C ARFGEF2 Missense_Mutation p.Y1696H 0.45 tolerated(0.07) probably_damaging(0.955) TCGA-4A-A93X-01 20 61296558 61296558 C T SLCO4A1 Intron 0.33 TCGA-4A-A93X-01 21 46900748 46900748 T C COL18A1 Silent p.G709G 0.46 TCGA-4A-A93X-01 22 29121248 29121248 G T CHEK2 Missense_Mutation p.H186N 0.87 deleterious(0) probably_damaging(1) TCGA-4A-A93X-01 22 37331470 37331470 A G CSF2RB Missense_Mutation p.I465V 0.86 tolerated(1) benign(0.002) TCGA-4A-A93X-01 22 42172130 42172130 G T MEI1 Missense_Mutation p.D857Y 0.07 deleterious(0.01) possibly_damaging(0.874) TCGA-4A-A93X-01 2 102808484 102808484 G C IL1RL2 Missense_Mutation p.E131D 0.46 tolerated(0.32) benign(0.022) TCGA-4A-A93X-01 2 160289282 160289282 T A BAZ2B Missense_Mutation p.D629V 0.36 possibly_damaging(0.804) TCGA-4A-A93X-01 2 160289383 160289383 A T BAZ2B Missense_Mutation p.D595E 0.39 benign(0.417) TCGA-4A-A93X-01 2 162762260 162762260 C T SLC4A10 Silent p.I620I 0.43 TCGA-4A-A93X-01 2 173352755 173352755 A G ITGA6 Silent p.L797L 0.43 TCGA-4A-A93X-01 2 178098799 178098799 T G NFE2L2 Missense_Mutation p.E82D 0.36 deleterious(0) probably_damaging(0.999) TCGA-4A-A93X-01 2 179470170 179470170 G T TTN Missense_Mutation p.P17951H 0.10 TCGA-4A-A93X-01 2 201853076 201853076 G C FAM126B Silent p.V300V 0.47 TCGA-4A-A93X-01 2 210681762 210681762 C T UNC80 Missense_Mutation p.R489C 0.14 probably_damaging(0.963) TCGA-4A-A93X-01 2 210791711 210791711 G T UNC80 Splice_Site p.X1870_splice 0.44 TCGA-4A-A93X-01 2 27850763 27850763 C A CCDC121 Missense_Mutation p.R130S 0.29 tolerated(0.83) benign(0.001) TCGA-4A-A93X-01 2 44547286 44547286 C A PREPL 3'UTR 0.41 TCGA-4A-A93X-01 2 74902423 74902423 C A SEMA4F Silent p.V428V 0.47 TCGA-4A-A93X-01 2 9528626 9528626 C T ASAP2 Silent p.A778A 0.48 TCGA-4A-A93X-01 3 100093911 100093911 G A TOMM70A Missense_Mutation p.A393V 0.31 deleterious(0) probably_damaging(1) TCGA-4A-A93X-01 3 132361614 132361614 C T ACAD11 Silent p.L94L 0.61 TCGA-4A-A93X-01 3 184971733 184971733 T G EHHADH Intron 0.29 TCGA-4A-A93X-01 3 47144870 47144870 T G SETD2 Missense_Mutation p.N1628T 0.57 deleterious(0) probably_damaging(0.999) TCGA-4A-A93X-01 3 52598065 52598065 C T PBRM1 Splice_Site p.X1267_splice 0.32 TCGA-4A-A93X-01 3 52643768 52643768 G A PBRM1 Nonsense_Mutation p.R710* 0.60 TCGA-4A-A93X-01 3 9822032 9822032 G A TADA3 3'UTR 0.54 TCGA-4A-A93X-01 4 106744194 106744194 G T GSTCD Missense_Mutation p.G442C 0.40 deleterious(0) probably_damaging(1) TCGA-4A-A93X-01 4 113538711 113538711 T G C4orf21 Missense_Mutation p.L829F 0.41 deleterious(0) probably_damaging(0.998) TCGA-4A-A93X-01 4 187539082 187539082 T G FAT1 Missense_Mutation p.K2886N 0.32 benign(0.063) TCGA-4A-A93X-01 4 48550800 48550800 C T FRYL Missense_Mutation p.A1599T 0.41 deleterious(0) probably_damaging(0.999) TCGA-4A-A93X-01 5 118582763 118582763 A C DMXL1 Missense_Mutation p.N2978T 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-4A-A93X-01 5 140174449 140174449 C T PCDHA2 5'Flank 0.28 TCGA-4A-A93X-01 5 175392129 175392129 C T THOC3 Missense_Mutation p.D152N 0.25 tolerated(0.13) benign(0.004) TCGA-4A-A93X-01 5 176812833 176812833 T C SLC34A1 Missense_Mutation p.Y31H 0.45 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-4A-A93X-01 5 19473699 19473699 G A CDH18 Missense_Mutation p.A670V 0.36 deleterious(0) possibly_damaging(0.793) TCGA-4A-A93X-01 5 41925546 41925546 T A FBXO4 Silent p.R45R 0.48 TCGA-4A-A93X-01 5 43628360 43628360 A C NNT Missense_Mutation p.K279Q 0.52 tolerated(0.44) benign(0.029) TCGA-4A-A93X-01 5 52096713 52096713 A G PELO Missense_Mutation p.K162R 0.44 tolerated(1) benign(0.317) TCGA-4A-A93X-01 6 145948580 145948580 T C EPM2A Missense_Mutation p.K323R 0.44 tolerated(0.72) benign(0.004) TCGA-4A-A93X-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.06 TCGA-4A-A93X-01 6 1613915 1613915 T G FOXC1 3'UTR 0.10 TCGA-4A-A93X-01 6 30698809 30698809 C G FLOT1 Missense_Mutation p.Q264H 0.48 deleterious(0.02) possibly_damaging(0.779) TCGA-4A-A93X-01 6 42790539 42790539 C T GLTSCR1L Missense_Mutation p.P16L 0.42 tolerated(0.22) probably_damaging(0.999) TCGA-4A-A93X-01 6 83767689 83767689 G A UBE3D Missense_Mutation p.L44F 0.50 deleterious(0.01) probably_damaging(0.958) TCGA-4A-A93X-01 6 90604946 90604946 T C GJA10 Silent p.D253D 0.44 TCGA-4A-A93X-01 7 100855146 100855146 T C PLOD3 Missense_Mutation p.I405V 0.51 tolerated(0.12) benign(0.001) TCGA-4A-A93X-01 7 102760435 102760435 G A NAPEPLD Missense_Mutation p.P177L 0.44 tolerated(0.19) benign(0.003) TCGA-4A-A93X-01 7 116403318 116403318 T G MET Missense_Mutation p.I878S 0.04 deleterious(0.01) probably_damaging(0.966) TCGA-4A-A93X-01 7 138711269 138711269 T G ZC3HAV1L 3'UTR 0.36 TCGA-4A-A93X-01 7 141803121 141803121 C T MGAM Missense_Mutation p.P1793L 0.48 deleterious(0.04) benign(0.006) TCGA-4A-A93X-01 7 149462279 149462279 G T ZNF467 Missense_Mutation p.R438S 0.06 deleterious(0) possibly_damaging(0.873) TCGA-4A-A93X-01 7 151866304 151866304 G T KMT2C Missense_Mutation p.P3162T 0.44 benign(0.226) TCGA-4A-A93X-01 7 154738247 154738247 G T PAXIP1 Nonsense_Mutation p.C1036* 0.41 TCGA-4A-A93X-01 7 30092325 30092325 G A PLEKHA8 Silent p.R213R 0.48 TCGA-4A-A93X-01 7 44560616 44560616 G A NPC1L1 Missense_Mutation p.R1019W 0.06 tolerated(0.18) possibly_damaging(0.586) TCGA-4A-A93X-01 7 86813800 86813800 G A DMTF1 Missense_Mutation p.G303D 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-4A-A93X-01 7 92821636 92821636 C A HEPACAM2 Missense_Mutation p.G439V 0.24 deleterious(0.02) benign(0.059) TCGA-4A-A93X-01 7 99768943 99768943 G T GPC2 Missense_Mutation p.A476E 0.24 tolerated(0.56) possibly_damaging(0.898) TCGA-4A-A93X-01 8 1814770 1814770 T G ARHGEF10 Splice_Site p.X208_splice 0.63 TCGA-4A-A93X-01 8 1998968 1998968 G A MYOM2 Missense_Mutation p.D30N 0.70 tolerated(0.12) benign(0.006) TCGA-4A-A93X-01 8 42012262 42012262 T G AP3M2 Missense_Mutation p.H19Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-4A-A93X-01 8 72987583 72987583 A G TRPA1 Missense_Mutation p.V21A 0.31 tolerated(0.17) benign(0.001) TCGA-4A-A93X-01 8 77776566 77776571 CTTCTC - ZFHX4 In_Frame_Del p.S3540_P3541del 0.51 TCGA-4A-A93X-01 9 132084554 132084554 C T C9orf106 RNA 0.63 TCGA-4A-A93X-01 9 135804182 135804183 TG - TSC1 Frame_Shift_Del p.T26Sfs*4 0.29 TCGA-4A-A93X-01 9 34837665 34837665 T A FAM205B RNA 0.40 TCGA-4A-A93X-01 X 123205104 123205104 C T STAG2 Nonsense_Mutation p.Q822* 0.93 TCGA-4A-A93X-01 X 47273041 47273041 C T ZNF157 3'UTR 0.47 TCGA-4A-A93X-01 Y 5605342 5605342 G T PCDH11Y Missense_Mutation p.A1128S 0.05 deleterious(0.01) possibly_damaging(0.79) TCGA-4A-A93Y-01 10 101552068 101552068 A G ABCC2 Silent p.T95T 0.08 TCGA-4A-A93Y-01 11 112039990 112039990 A T TEX12 5'UTR 0.06 TCGA-4A-A93Y-01 11 57798465 57798465 T A OR6Q1 Missense_Mutation p.F14Y 0.09 deleterious(0) probably_damaging(0.952) TCGA-4A-A93Y-01 12 57589521 57589521 G T LRP1 Missense_Mutation p.D2840Y 0.08 probably_damaging(0.991) TCGA-4A-A93Y-01 15 41797955 41797955 C T LTK Silent p.S551S 0.04 TCGA-4A-A93Y-01 15 56985349 56985349 G T ZNF280D Missense_Mutation p.T149N 0.03 tolerated(0.12) probably_damaging(0.932) TCGA-4A-A93Y-01 16 24358125 24358125 C T CACNG3 Silent p.A94A 0.07 TCGA-4A-A93Y-01 16 2579632 2579632 T G CEMP1 Intron 0.13 TCGA-4A-A93Y-01 16 2815061 2815061 C T SRRM2 Missense_Mutation p.T1511I 0.13 benign(0.184) TCGA-4A-A93Y-01 16 3786685 3786685 T C CREBBP Missense_Mutation p.K1509R 0.05 unknown(0) TCGA-4A-A93Y-01 16 72133644 72133644 A T DHX38 Missense_Mutation p.D325V 0.07 deleterious(0.01) possibly_damaging(0.474) TCGA-4A-A93Y-01 17 15965099 15965099 G T NCOR1 Missense_Mutation p.Q1833K 0.05 probably_damaging(0.966) TCGA-4A-A93Y-01 17 30315477 30315477 G T SUZ12 Nonsense_Mutation p.E388* 0.05 TCGA-4A-A93Y-01 17 40129157 40129157 G T CNP 3'UTR 0.07 TCGA-4A-A93Y-01 17 49197741 49197741 T A SPAG9 Nonsense_Mutation p.K93* 0.10 TCGA-4A-A93Y-01 17 49197742 49197742 C T SPAG9 Silent p.E92E 0.10 TCGA-4A-A93Y-01 1 118629320 118629320 G T SPAG17 Missense_Mutation p.H529N 0.05 tolerated(0.25) possibly_damaging(0.533) TCGA-4A-A93Y-01 1 161953624 161953624 G T OLFML2B Nonsense_Mutation p.Y698* 0.06 TCGA-4A-A93Y-01 1 16532674 16532674 C T ARHGEF19 Splice_Site p.X433_splice 0.07 TCGA-4A-A93Y-01 1 167893755 167893755 A G MPC2 Missense_Mutation p.W44R 0.04 deleterious(0) probably_damaging(1) TCGA-4A-A93Y-01 1 16945273 16945273 T A RP5-1182A14.5 3'Flank 0.12 TCGA-4A-A93Y-01 1 228474538 228474538 C A OBSCN Silent p.T3543T 0.04 TCGA-4A-A93Y-01 20 20493272 20493272 C T RALGAPA2 Missense_Mutation p.D1581N 0.06 tolerated(0.16) benign(0.003) TCGA-4A-A93Y-01 20 58445040 58445040 T G SYCP2 Splice_Site p.X1186_splice 0.13 TCGA-4A-A93Y-01 2 179479486 179479486 T A TTN Intron 0.05 TCGA-4A-A93Y-01 2 210801588 210801588 T C UNC80 Silent p.N2032N 0.04 TCGA-4A-A93Y-01 2 219508733 219508733 A T ZNF142 Missense_Mutation p.F836I 0.09 deleterious(0) possibly_damaging(0.637) TCGA-4A-A93Y-01 2 86292617 86292617 G A POLR1A Intron 0.08 TCGA-4A-A93Y-01 3 69168321 69168321 A G LMOD3 Silent p.D395D 0.04 TCGA-4A-A93Y-01 4 105412357 105412357 T C CXXC4 Silent p.L201L 0.08 TCGA-4A-A93Y-01 6 142714109 142714109 A T GPR126 Missense_Mutation p.N445Y 0.05 deleterious(0.03) probably_damaging(0.986) TCGA-4A-A93Y-01 7 128049912 128049912 G C IMPDH1 Missense_Mutation p.A15G 0.06 tolerated_low_confidence(0.32) unknown(0) TCGA-4A-A93Y-01 7 128049913 128049913 C T IMPDH1 Missense_Mutation p.A15T 0.06 tolerated_low_confidence(0.06) unknown(0) TCGA-4A-A93Y-01 7 51095939 51095939 C T COBL Missense_Mutation p.G952R 0.05 tolerated(0.53) benign(0.003) TCGA-4A-A93Y-01 7 99573635 99573635 T G AZGP1 Missense_Mutation p.R3S 0.05 tolerated(0.74) benign(0.017) TCGA-4A-A93Y-01 9 129647768 129647768 A G ZBTB34 3'UTR 0.06 TCGA-4A-A93Y-01 9 17330790 17330790 C A CNTLN Missense_Mutation p.A501D 0.04 tolerated(0.29) benign(0.01) TCGA-4A-A93Y-01 9 36400105 36400105 T C RNF38 Translation_Start_Site p.M1? 0.06 tolerated_low_confidence(0.1) benign(0) TCGA-4A-A93Y-01 9 5339693 5339693 T G RLN1 Missense_Mutation p.Q18H 0.06 tolerated(0.13) probably_damaging(0.969) TCGA-4A-A93Y-01 X 119391745 119391745 T C ZBTB33 3'UTR 0.06 TCGA-4A-A93Y-01 X 15582170 15582170 G T ACE2 Missense_Mutation p.F762L 0.03 deleterious_low_confidence(0.04) benign(0.006) TCGA-4A-A93Y-01 X 3235245 3235245 C A MXRA5 Missense_Mutation p.R2159S 0.05 tolerated(0.41) benign(0.101) TCGA-4A-A93Y-01 X 3235246 3235246 C A MXRA5 Missense_Mutation p.R2159M 0.05 tolerated(0.22) probably_damaging(0.942) TCGA-4A-A93Y-01 X 46360643 46360643 T G ZNF674 Missense_Mutation p.R127S 0.03 tolerated(0.11) benign(0.008) TCGA-5P-A9JU-01 10 125447637 125447637 C T GPR26 Silent p.G325G 0.56 TCGA-5P-A9JU-01 10 38120750 38120750 T G ZNF248 Missense_Mutation p.Q511H 0.72 tolerated(0.29) probably_damaging(0.998) TCGA-5P-A9JU-01 10 70550999 70550999 C G CCAR1 Silent p.S1143S 0.65 TCGA-5P-A9JU-01 11 111956122 111956122 G A TIMM8B Missense_Mutation p.S65F 0.35 tolerated(0.05) benign(0.023) TCGA-5P-A9JU-01 11 1157555 1157555 G T MUC5AC Nonsense_Mutation p.E246* 0.43 TCGA-5P-A9JU-01 11 43469573 43469573 G A TTC17 Missense_Mutation p.R896H 0.21 tolerated(0.13) benign(0.179) TCGA-5P-A9JU-01 11 460237 460243 ATGTGAC - PTDSS2 Frame_Shift_Del p.Y78Cfs*52 0.32 TCGA-5P-A9JU-01 11 5323073 5323073 G A OR51B4 Missense_Mutation p.S35F 0.44 tolerated(0.05) benign(0.006) TCGA-5P-A9JU-01 11 613956 613956 G A IRF7 Missense_Mutation p.T267M 0.09 tolerated(0.25) benign(0) TCGA-5P-A9JU-01 11 64601408 64601408 G A CDC42BPG Missense_Mutation p.R819W 0.37 tolerated(0.14) benign(0.002) TCGA-5P-A9JU-01 11 86056732 86056733 - AA C11orf73 3'UTR 0.09 TCGA-5P-A9JU-01 12 1005251 1005251 A G WNK1 Silent p.A1866A 0.38 TCGA-5P-A9JU-01 12 109961880 109961880 C - UBE3B Frame_Shift_Del p.S821Ffs*25 0.17 TCGA-5P-A9JU-01 12 52708231 52708231 C A KRT83 3'UTR 0.30 TCGA-5P-A9JU-01 12 54792434 54792434 G C ITGA5 Missense_Mutation p.L964V 0.37 tolerated(0.56) benign(0.07) TCGA-5P-A9JU-01 12 6472823 6472823 G A SCNN1A Missense_Mutation p.T216M 0.36 deleterious(0.01) benign(0.394) TCGA-5P-A9JU-01 13 52516678 52516679 - T ATP7B Frame_Shift_Ins p.E1086Rfs*32 0.24 TCGA-5P-A9JU-01 14 105408237 105408237 G A AHNAK2 Silent p.S4517S 0.46 TCGA-5P-A9JU-01 14 23828684 23828684 G A EFS Missense_Mutation p.R335W 0.38 deleterious(0) probably_damaging(0.972) TCGA-5P-A9JU-01 14 24807103 24807103 G T RIPK3 Missense_Mutation p.P270T 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-5P-A9JU-01 14 62462841 62462841 T A SYT16 Nonsense_Mutation p.L35* 0.33 TCGA-5P-A9JU-01 14 62462842 62462842 A T SYT16 Missense_Mutation p.L35F 0.32 deleterious_low_confidence(0.05) benign(0.068) TCGA-5P-A9JU-01 15 31330016 31330017 CT - TRPM1 Frame_Shift_Del p.K840Rfs*3 0.23 TCGA-5P-A9JU-01 15 42456665 42456665 A G VPS39 Silent p.A639A 0.39 TCGA-5P-A9JU-01 15 45411430 45411430 G A DUOXA1 Silent p.L302L 0.42 TCGA-5P-A9JU-01 15 65157740 65157740 C - PLEKHO2 Frame_Shift_Del p.W378Gfs*39 0.31 TCGA-5P-A9JU-01 15 72192260 72192260 G C MYO9A Missense_Mutation p.L1080V 0.40 tolerated(0.8) benign(0.001) TCGA-5P-A9JU-01 15 85452001 85452001 T C SLC28A1 Missense_Mutation p.L257P 0.43 deleterious(0) probably_damaging(0.951) TCGA-5P-A9JU-01 15 86122639 86122639 A C AKAP13 Missense_Mutation p.Q447P 0.45 tolerated_low_confidence(0.16) possibly_damaging(0.578) TCGA-5P-A9JU-01 16 19474683 19474683 T A TMC5 Silent p.I410I 0.37 TCGA-5P-A9JU-01 16 24578519 24578519 T C RBBP6 Missense_Mutation p.S549P 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.716) TCGA-5P-A9JU-01 16 31121525 31121525 G T BCKDK Splice_Site p.X142_splice 0.39 TCGA-5P-A9JU-01 17 2226627 2226627 G T SRR Missense_Mutation p.E264D 0.11 tolerated(0.37) benign(0.162) TCGA-5P-A9JU-01 17 38297029 38297030 GT - CASC3 Frame_Shift_Del 0.32 TCGA-5P-A9JU-01 17 42427873 42427873 A C GRN Missense_Mutation p.T176P 0.11 deleterious(0.04) benign(0.427) TCGA-5P-A9JU-01 17 4838235 4838235 T G GP1BA 3'UTR 0.44 TCGA-5P-A9JU-01 17 5085263 5085263 A T ZNF594 Nonsense_Mutation p.C763* 0.36 TCGA-5P-A9JU-01 18 19031043 19031043 G T GREB1L Nonsense_Mutation p.E594* 0.10 TCGA-5P-A9JU-01 18 19154134 19154134 G A ESCO1 Missense_Mutation p.S224F 0.38 deleterious(0) possibly_damaging(0.599) TCGA-5P-A9JU-01 19 3381992 3381992 G A NFIC Missense_Mutation p.V105M 0.09 deleterious(0) probably_damaging(1) TCGA-5P-A9JU-01 19 41596036 41596036 G T CYP2A13 Missense_Mutation p.R143L 0.10 deleterious(0) possibly_damaging(0.854) TCGA-5P-A9JU-01 19 41596037 41596037 C T CYP2A13 Silent p.R143R 0.10 TCGA-5P-A9JU-01 19 41808585 41808585 C A HNRNPUL1 Missense_Mutation p.P568Q 0.27 deleterious(0) unknown(0) TCGA-5P-A9JU-01 19 45322442 45322442 G A BCAM Missense_Mutation p.G489E 0.47 tolerated(0.08) possibly_damaging(0.873) TCGA-5P-A9JU-01 19 45911526 45911526 G - CD3EAP Frame_Shift_Del p.A101Qfs*15 0.30 TCGA-5P-A9JU-01 19 50305265 50305285 CTGGGGCTGCGGGCAGCCCCT - AP2A1 In_Frame_Del p.L661_P667del 0.28 TCGA-5P-A9JU-01 19 57640983 57640983 C A USP29 Missense_Mutation p.L314I 0.33 deleterious(0.01) probably_damaging(0.977) TCGA-5P-A9JU-01 19 57640984 57640984 T A USP29 Missense_Mutation p.L314H 0.34 deleterious(0) probably_damaging(0.997) TCGA-5P-A9JU-01 19 57967199 57967199 A G VN1R1 Missense_Mutation p.L219S 0.38 deleterious(0) probably_damaging(0.991) TCGA-5P-A9JU-01 1 146398375 146398375 C T NBPF12 Missense_Mutation p.R121C 0.30 possibly_damaging(0.833) TCGA-5P-A9JU-01 1 160924533 160924533 C G ITLN2 5'UTR 0.44 TCGA-5P-A9JU-01 1 163318835 163318835 A C NUF2 Missense_Mutation p.K409Q 0.07 tolerated(0.09) benign(0.319) TCGA-5P-A9JU-01 1 16451611 16451611 A G EPHA2 3'UTR 0.08 TCGA-5P-A9JU-01 1 168044703 168044703 T C DCAF6 3'UTR 0.39 TCGA-5P-A9JU-01 1 17721468 17721468 T C PADI6 RNA 0.33 TCGA-5P-A9JU-01 1 179078368 179078368 C A ABL2 Missense_Mutation p.Q678H 0.42 tolerated_low_confidence(0.36) probably_damaging(0.979) TCGA-5P-A9JU-01 1 185106774 185106774 C A TRMT1L Nonsense_Mutation p.E493* 0.31 TCGA-5P-A9JU-01 1 201009812 201009815 GCAT - CACNA1S Frame_Shift_Del p.M1721* 0.34 TCGA-5P-A9JU-01 1 205632745 205632745 G T SLC45A3 Silent p.G58G 0.06 TCGA-5P-A9JU-01 1 231155814 231155814 G A FAM89A Missense_Mutation p.S117L 0.45 deleterious(0) probably_damaging(0.986) TCGA-5P-A9JU-01 1 40126872 40126872 C T NT5C1A Missense_Mutation p.R207H 0.10 deleterious(0) probably_damaging(0.997) TCGA-5P-A9JU-01 1 86817612 86817613 - T ODF2L 3'UTR 0.28 TCGA-5P-A9JU-01 1 92182200 92182200 C T TGFBR3 Silent p.E544E 0.43 TCGA-5P-A9JU-01 1 92712690 92712690 A T GLMN Missense_Mutation p.S533T 0.26 tolerated(0.19) benign(0.229) TCGA-5P-A9JU-01 20 32376749 32376749 G A ZNF341 Missense_Mutation p.E638K 0.12 tolerated(0.09) possibly_damaging(0.462) TCGA-5P-A9JU-01 20 49510165 49510165 T C ADNP Silent p.Q362Q 0.34 TCGA-5P-A9JU-01 20 52644847 52644847 G T BCAS1 Intron 0.45 TCGA-5P-A9JU-01 21 17603385 17603385 A C LINC00478 RNA 0.34 TCGA-5P-A9JU-01 21 43693428 43693428 G - ABCG1 Frame_Shift_Del p.A142Pfs*37 0.30 TCGA-5P-A9JU-01 22 24176330 24176330 G A SMARCB1 Missense_Mutation p.R374Q 0.70 deleterious(0.01) probably_damaging(0.999) TCGA-5P-A9JU-01 2 15534394 15534394 C G NBAS Missense_Mutation p.A1072P 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-5P-A9JU-01 2 166799781 166799781 T C TTC21B Missense_Mutation p.Y167C 0.46 tolerated(0.06) benign(0.012) TCGA-5P-A9JU-01 2 179431408 179431408 G T TTN Missense_Mutation p.P26484H 0.07 TCGA-5P-A9JU-01 2 191067483 191067483 A C C2orf88 3'UTR 0.40 TCGA-5P-A9JU-01 2 209150550 209150550 T C PIKFYVE Silent p.D238D 0.45 TCGA-5P-A9JU-01 2 219129105 219129105 G T AAMP 3'UTR 0.52 TCGA-5P-A9JU-01 2 241658507 241658507 G A KIF1A Silent p.S1710S 0.41 TCGA-5P-A9JU-01 2 61433163 61433163 T C USP34 Missense_Mutation p.N3048S 0.47 tolerated(0.26) benign(0.04) TCGA-5P-A9JU-01 2 61433164 61433164 T A USP34 Missense_Mutation p.N3048Y 0.45 tolerated(0.06) possibly_damaging(0.619) TCGA-5P-A9JU-01 2 89104389 89104389 A G ANKRD36BP2 RNA 0.25 TCGA-5P-A9JU-01 2 9347341 9347342 TG - ASAP2 Frame_Shift_Del p.V37Gfs*35 0.18 TCGA-5P-A9JU-01 3 100025388 100025388 G A TBC1D23 Splice_Site p.X471_splice 0.78 TCGA-5P-A9JU-01 3 135974705 135974706 - A PCCB Frame_Shift_Ins p.T65Nfs*17 0.32 TCGA-5P-A9JU-01 3 149374844 149374844 G C WWTR1 Missense_Mutation p.H84D 0.78 deleterious(0) probably_damaging(0.994) TCGA-5P-A9JU-01 3 43098059 43098059 T C FAM198A 3'UTR 0.30 TCGA-5P-A9JU-01 3 47162892 47162892 C - SETD2 Frame_Shift_Del p.L1078Ffs*43 0.42 TCGA-5P-A9JU-01 3 52597437 52597437 A - PBRM1 Frame_Shift_Del p.F1291Lfs*4 0.41 TCGA-5P-A9JU-01 4 1018294 1018294 T A FGFRL1 Missense_Mutation p.V305E 0.32 deleterious(0) probably_damaging(0.999) TCGA-5P-A9JU-01 4 367429 367430 - ACA ZNF141 In_Frame_Ins p.G401_K402insT 0.37 TCGA-5P-A9JU-01 5 1094341 1094342 - TTT SLC12A7 In_Frame_Ins p.E48_N49insK 0.46 TCGA-5P-A9JU-01 5 1594594 1594594 C A CTD-2012J19.3 5'Flank 0.05 TCGA-5P-A9JU-01 5 93217216 93217216 T - FAM172A Frame_Shift_Del p.N249Tfs*8 0.27 TCGA-5P-A9JU-01 6 160551135 160551135 G T SLC22A1 Splice_Site p.X138_splice 0.06 TCGA-5P-A9JU-01 7 100468243 100468243 G C TRIP6 Missense_Mutation p.V293L 0.28 deleterious(0) possibly_damaging(0.892) TCGA-5P-A9JU-01 7 149476014 149476014 A G SSPO RNA 0.45 TCGA-5P-A9JU-01 7 153750140 153750140 G A DPP6 Missense_Mutation p.E79K 0.11 tolerated(0.36) benign(0.022) TCGA-5P-A9JU-01 7 5402310 5402310 A C TNRC18 Missense_Mutation p.Y1456D 0.04 probably_damaging(0.998) TCGA-5P-A9JU-01 7 5792508 5792510 TCT - RNF216 In_Frame_Del p.E57del 0.20 TCGA-5P-A9JU-01 8 120854141 120854141 C A DSCC1 Missense_Mutation p.A273S 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-5P-A9JU-01 8 124811759 124811759 G A FAM91A1 Splice_Site p.X521_splice 0.26 TCGA-5P-A9JU-01 8 144653908 144653908 C T MROH6 Silent p.L177L 0.31 TCGA-5P-A9JU-01 8 16026082 16026082 G T MSR1 Missense_Mutation p.A172E 0.04 tolerated(0.9) benign(0.009) TCGA-5P-A9JU-01 8 41522686 41522686 G T ANK1 Intron 0.60 TCGA-5P-A9JU-01 8 95835690 95835690 G A INTS8 Missense_Mutation p.A11T 0.40 deleterious(0.02) benign(0.385) TCGA-5P-A9JU-01 9 139718091 139718091 G T RABL6 Missense_Mutation p.S82I 0.49 deleterious(0) possibly_damaging(0.904) TCGA-5P-A9JU-01 9 139874655 139874655 G T PTGDS Missense_Mutation p.A157S 0.25 tolerated(0.09) benign(0.067) TCGA-5P-A9JU-01 X 112065566 112065566 A T AMOT Nonsense_Mutation p.Y263* 0.79 TCGA-5P-A9JU-01 X 64138838 64138838 G T ZC4H2 Intron 0.07 TCGA-5P-A9JU-01 X 65253395 65253395 G A VSIG4 Silent p.Y111Y 0.79 TCGA-5P-A9JV-01 10 103599561 103599561 C G KCNIP2 Intron 0.21 TCGA-5P-A9JV-01 10 11985132 11985132 T C UPF2 Silent p.E1070E 0.26 TCGA-5P-A9JV-01 10 122650370 122650370 G T WDR11 Missense_Mutation p.C829F 0.20 tolerated(0.08) benign(0.078) TCGA-5P-A9JV-01 10 45953921 45953921 A - MARCH8 Frame_Shift_Del p.F214Lfs*22 0.21 TCGA-5P-A9JV-01 10 5008141 5008141 G T AKR1C1 Missense_Mutation p.L40F 0.10 tolerated(0.62) benign(0.056) TCGA-5P-A9JV-01 10 61413535 61413535 A G SLC16A9 Missense_Mutation p.Y417H 0.20 deleterious(0) probably_damaging(0.998) TCGA-5P-A9JV-01 11 104971430 104971430 T A CARD17 Missense_Mutation p.E28D 0.29 tolerated(0.64) benign(0.101) TCGA-5P-A9JV-01 11 46799725 46799725 G T CKAP5 Silent p.A904A 0.22 TCGA-5P-A9JV-01 11 4703537 4703537 G T OR51E2 Silent p.L135L 0.27 TCGA-5P-A9JV-01 11 55065405 55065405 A T TRIM51HP RNA 0.33 TCGA-5P-A9JV-01 11 55371404 55371404 C G OR4C11 Missense_Mutation p.G149A 0.25 deleterious(0.02) benign(0.424) TCGA-5P-A9JV-01 11 57509320 57509320 G C C11orf31 Silent p.L54L 0.26 TCGA-5P-A9JV-01 11 67201948 67201948 C G RPS6KB2 Missense_Mutation p.A383G 0.09 tolerated(0.08) benign(0.012) TCGA-5P-A9JV-01 11 9004895 9004895 G A NRIP3 3'UTR 0.12 TCGA-5P-A9JV-01 12 49332835 49332835 G A AC073610.5 Silent p.S22S 0.24 TCGA-5P-A9JV-01 12 56817448 56817448 C T TIMELESS Silent p.E670E 0.05 TCGA-5P-A9JV-01 14 68126460 68126460 C A VTI1B Missense_Mutation p.E118D 0.37 tolerated(0.07) benign(0.038) TCGA-5P-A9JV-01 16 2301546 2301546 G T ECI1 Silent p.R8R 0.20 TCGA-5P-A9JV-01 16 24372986 24372986 C T CACNG3 Silent p.I250I 0.19 TCGA-5P-A9JV-01 16 4935927 4935927 T G PPL Missense_Mutation p.E910A 0.21 deleterious(0) probably_damaging(0.999) TCGA-5P-A9JV-01 16 88501018 88501018 A T ZNF469 Silent p.P2352P 0.25 TCGA-5P-A9JV-01 17 10538254 10538254 T C MYH3 Missense_Mutation p.Q1420R 0.32 deleterious(0.04) benign(0.017) TCGA-5P-A9JV-01 17 17701402 17701402 A T RAI1 Nonsense_Mutation p.K1714* 0.21 TCGA-5P-A9JV-01 17 46048728 46048728 G T CDK5RAP3 Missense_Mutation p.D3Y 0.26 deleterious(0.01) probably_damaging(0.939) TCGA-5P-A9JV-01 17 61972821 61972821 C G CSH1 Intron 0.26 TCGA-5P-A9JV-01 17 8024974 8024974 G A HES7 Missense_Mutation p.P203L 0.23 tolerated(0.19) probably_damaging(0.96) TCGA-5P-A9JV-01 18 28576852 28576852 T A DSC3 Missense_Mutation p.T800S 0.29 deleterious(0.01) benign(0.37) TCGA-5P-A9JV-01 19 54385763 54385763 C T PRKCG Silent p.G5G 0.21 TCGA-5P-A9JV-01 19 7975205 7975205 G T MAP2K7 Missense_Mutation p.G132C 0.26 deleterious(0) probably_damaging(1) TCGA-5P-A9JV-01 19 9045908 9045908 G C MUC16 Missense_Mutation p.T11908R 0.25 benign(0.016) TCGA-5P-A9JV-01 1 16532449 16532449 C T ARHGEF19 Silent p.Q476Q 0.23 TCGA-5P-A9JV-01 1 196758711 196758711 G A CFHR3 Intron 0.20 TCGA-5P-A9JV-01 1 200587031 200587031 T C KIF14 Missense_Mutation p.E274G 0.32 tolerated(0.08) possibly_damaging(0.883) TCGA-5P-A9JV-01 1 247611933 247611933 G A NLRP3 3'UTR 0.09 TCGA-5P-A9JV-01 1 35657046 35657046 G A SFPQ Missense_Mutation p.P305S 0.23 deleterious(0.04) probably_damaging(0.928) TCGA-5P-A9JV-01 20 2618194 2618194 A C TMC2 Missense_Mutation p.K820N 0.13 tolerated(0.41) benign(0.001) TCGA-5P-A9JV-01 2 125367417 125367417 G A CNTNAP5 Missense_Mutation p.G598E 0.24 deleterious(0) probably_damaging(1) TCGA-5P-A9JV-01 2 228337096 228337096 C T AGFG1 5'UTR 0.09 TCGA-5P-A9JV-01 2 233785268 233785268 T A NGEF Missense_Mutation p.K185I 0.16 tolerated(0.39) possibly_damaging(0.547) TCGA-5P-A9JV-01 2 25062898 25062898 T A ADCY3 Missense_Mutation p.Y400F 0.28 deleterious(0.05) benign(0.119) TCGA-5P-A9JV-01 2 44512788 44512788 A G SLC3A1 Intron 0.24 TCGA-5P-A9JV-01 2 48896944 48896944 T C STON1-GTF2A1L Silent p.D1058D 0.18 TCGA-5P-A9JV-01 3 138739039 138739039 G C PRR23B Nonsense_Mutation p.Y155* 0.23 TCGA-5P-A9JV-01 3 21465455 21465455 C A ZNF385D Silent p.G318G 0.20 TCGA-5P-A9JV-01 3 44671000 44671000 G A ZNF197 Silent p.E118E 0.22 TCGA-5P-A9JV-01 3 49832714 49832714 G T CDHR4 Missense_Mutation p.L316M 0.05 deleterious(0) benign(0.104) TCGA-5P-A9JV-01 3 52266117 52266117 G A TWF2 Missense_Mutation p.S42L 0.06 tolerated(0.6) benign(0.033) TCGA-5P-A9JV-01 3 88041127 88041127 A G HTR1F 3'UTR 0.17 TCGA-5P-A9JV-01 4 108615096 108615096 A C PAPSS1 Missense_Mutation p.I81S 0.20 deleterious(0.01) possibly_damaging(0.797) TCGA-5P-A9JV-01 4 108955643 108955643 T G HADH 3'UTR 0.09 TCGA-5P-A9JV-01 4 123207818 123207818 A G KIAA1109 Missense_Mutation p.M3054V 0.22 benign(0.026) TCGA-5P-A9JV-01 4 126411503 126411503 T C FAT4 Missense_Mutation p.V4509A 0.25 probably_damaging(0.98) TCGA-5P-A9JV-01 4 13605661 13605662 - T BOD1L1 Frame_Shift_Ins p.Q955Tfs*3 0.18 TCGA-5P-A9JV-01 4 156831319 156831319 C G TDO2 Missense_Mutation p.L192V 0.21 tolerated(0.23) benign(0.323) TCGA-5P-A9JV-01 4 2696771 2696771 A G FAM193A Missense_Mutation p.H773R 0.18 tolerated(0.26) probably_damaging(0.964) TCGA-5P-A9JV-01 4 68725349 68725349 A T TMPRSS11D Missense_Mutation p.V19E 0.23 deleterious(0) probably_damaging(0.941) TCGA-5P-A9JV-01 4 69692206 69692206 G A UGT2B10 Missense_Mutation p.D360N 0.17 deleterious(0.01) possibly_damaging(0.574) TCGA-5P-A9JV-01 4 77204610 77204610 A G FAM47E Nonstop_Mutation p.*394Wext*30 0.24 TCGA-5P-A9JV-01 5 134192821 134192821 A G C5orf24 3'UTR 0.09 TCGA-5P-A9JV-01 5 161495091 161495091 T A GABRG2 Missense_Mutation p.L29H 0.30 tolerated_low_confidence(0.06) possibly_damaging(0.873) TCGA-5P-A9JV-01 5 40764924 40764924 C A PRKAA1 Missense_Mutation p.S428I 0.23 deleterious(0) probably_damaging(0.999) TCGA-5P-A9JV-01 5 70840878 70840878 A G BDP1 Silent p.Q2192Q 0.16 TCGA-5P-A9JV-01 5 94814018 94814018 T A TTC37 Silent p.A1447A 0.21 TCGA-5P-A9JV-01 5 94994606 94994606 A T SPATA9 Silent p.V162V 0.18 TCGA-5P-A9JV-01 6 100062606 100062606 G T PRDM13 Missense_Mutation p.V699F 0.24 deleterious_low_confidence(0) benign(0.11) TCGA-5P-A9JV-01 6 46424516 46424516 C A RCAN2 Missense_Mutation p.Q66H 0.16 tolerated(0.1) possibly_damaging(0.814) TCGA-5P-A9JV-01 6 56918645 56918645 A G KIAA1586 Missense_Mutation p.I450V 0.03 tolerated(0.48) benign(0.002) TCGA-5P-A9JV-01 6 79655729 79655729 G C PHIP Missense_Mutation p.P1540R 0.21 deleterious_low_confidence(0) benign(0.034) TCGA-5P-A9JV-01 7 144096177 144096177 G A NOBOX Silent p.P445P 0.24 TCGA-5P-A9JV-01 7 2415106 2415106 G A EIF3B Missense_Mutation p.E658K 0.26 deleterious(0.01) possibly_damaging(0.771) TCGA-5P-A9JV-01 7 44715679 44715679 C T OGDH Silent p.A379A 0.05 TCGA-5P-A9JV-01 7 55270428 55270428 G A EGFR Intron 0.26 TCGA-5P-A9JV-01 7 88389267 88389267 C G ZNF804B 5'UTR 0.24 TCGA-5P-A9JV-01 7 95439731 95439731 G A DYNC1I1 Missense_Mutation p.V46I 0.31 tolerated(0.27) benign(0.001) TCGA-5P-A9JV-01 8 101271259 101271259 T C RNF19A Missense_Mutation p.K681R 0.05 tolerated_low_confidence(0.31) benign(0.006) TCGA-5P-A9JV-01 8 74858968 74858968 T C TCEB1 Missense_Mutation p.Y79C 0.31 deleterious(0.02) benign(0.085) TCGA-5P-A9JW-01 10 112044605 112044605 A T MXI1 Missense_Mutation p.S250C 0.30 deleterious(0.01) probably_damaging(1) TCGA-5P-A9JW-01 10 25010922 25010922 A C ARHGAP21 5'UTR 0.33 TCGA-5P-A9JW-01 10 31138561 31138561 T G ZNF438 Missense_Mutation p.K258T 0.32 deleterious(0.02) possibly_damaging(0.627) TCGA-5P-A9JW-01 10 91404533 91404533 G A PANK1 Missense_Mutation p.P176L 0.36 deleterious_low_confidence(0.01) benign(0.059) TCGA-5P-A9JW-01 11 117073681 117073681 C T TAGLN 5'UTR 0.20 TCGA-5P-A9JW-01 11 118392000 118392000 T A KMT2A Intron 0.31 TCGA-5P-A9JW-01 11 134147653 134147653 C - GLB1L3 Frame_Shift_Del p.T70Mfs*19 0.24 TCGA-5P-A9JW-01 11 20409110 20409110 A C PRMT3 5'UTR 0.26 TCGA-5P-A9JW-01 11 2970489 2970489 T G NAP1L4 Nonstop_Mutation p.*376Yext*60 0.29 TCGA-5P-A9JW-01 11 62420755 62420755 G A INTS5 5'UTR 0.36 TCGA-5P-A9JW-01 12 124846815 124846815 C A NCOR2 Missense_Mutation p.R986L 0.43 probably_damaging(0.954) TCGA-5P-A9JW-01 12 56722345 56722360 CTGCCGAATATCATCA - PAN2 Frame_Shift_Del p.S116Rfs*43 0.20 TCGA-5P-A9JW-01 12 7303653 7303653 A T CLSTN3 Missense_Mutation p.N841Y 0.29 tolerated(0.76) benign(0.142) TCGA-5P-A9JW-01 12 7476144 7476144 C T ACSM4 Silent p.F432F 0.22 TCGA-5P-A9JW-01 12 93210107 93210107 C A EEA1 Missense_Mutation p.D600Y 0.30 deleterious(0.01) possibly_damaging(0.786) TCGA-5P-A9JW-01 14 21463350 21463350 T A METTL17 Silent p.A301A 0.31 TCGA-5P-A9JW-01 14 21868201 21868201 A T CHD8 Missense_Mutation p.Y1586N 0.28 deleterious(0) possibly_damaging(0.823) TCGA-5P-A9JW-01 14 21868202 21868202 G A CHD8 Silent p.Y1585Y 0.28 TCGA-5P-A9JW-01 14 55451547 55451547 T C WDHD1 Silent p.G600G 0.33 TCGA-5P-A9JW-01 14 74825395 74825395 G A VRTN Missense_Mutation p.D637N 0.29 tolerated(0.49) benign(0.007) TCGA-5P-A9JW-01 14 89305871 89305871 A G TTC8 Missense_Mutation p.I74V 0.03 tolerated(0.18) possibly_damaging(0.811) TCGA-5P-A9JW-01 15 30001031 30001031 T C TJP1 Missense_Mutation p.T1528A 0.05 tolerated_low_confidence(0.18) benign(0.196) TCGA-5P-A9JW-01 15 55930800 55930800 T C PRTG Missense_Mutation p.D800G 0.34 tolerated(0.12) benign(0.02) TCGA-5P-A9JW-01 15 59417066 59417066 G A CCNB2 Missense_Mutation p.G396E 0.31 tolerated(0.16) benign(0.069) TCGA-5P-A9JW-01 15 62221902 62221902 A - VPS13C Frame_Shift_Del p.I2028Mfs*3 0.26 TCGA-5P-A9JW-01 15 64047449 64047449 C A HERC1 Nonsense_Mutation p.E537* 0.24 TCGA-5P-A9JW-01 15 88419989 88419989 G T NTRK3 3'Flank 0.26 TCGA-5P-A9JW-01 16 11980375 11980375 A G GSPT1 Silent p.L402L 0.23 TCGA-5P-A9JW-01 16 1823724 1823724 G A EME2 Missense_Mutation p.G89D 0.47 deleterious(0) probably_damaging(0.983) TCGA-5P-A9JW-01 16 20476962 20476962 T C ACSM2A Missense_Mutation p.C101R 0.10 deleterious(0) probably_damaging(0.999) TCGA-5P-A9JW-01 16 20570646 20570646 A G ACSM2B Missense_Mutation p.C101R 0.53 deleterious(0) probably_damaging(1) TCGA-5P-A9JW-01 16 779532 779532 A G HAGHL 3'UTR 0.54 TCGA-5P-A9JW-01 17 19317918 19317918 G A RNF112 Missense_Mutation p.R318H 0.25 tolerated(0.18) benign(0.14) TCGA-5P-A9JW-01 17 29226569 29226570 - T TEFM Frame_Shift_Ins p.T234Nfs*30 0.24 TCGA-5P-A9JW-01 17 46700151 46700151 C T HOXB9 3'UTR 0.64 TCGA-5P-A9JW-01 17 58300877 58300877 G T USP32 Missense_Mutation p.N501K 0.28 tolerated(0.31) probably_damaging(0.992) TCGA-5P-A9JW-01 17 73780835 73780835 A G UNK 5'Flank 0.33 TCGA-5P-A9JW-01 17 80900485 80900485 T - TBCD 3'UTR 0.40 TCGA-5P-A9JW-01 19 1299934 1299934 T C EFNA2 Missense_Mutation p.L211P 0.15 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-5P-A9JW-01 19 18121498 18121498 T G ARRDC2 Missense_Mutation p.I377S 0.32 deleterious(0) benign(0.221) TCGA-5P-A9JW-01 19 39224978 39224978 T C CAPN12 Missense_Mutation p.Q599R 0.37 tolerated(0.16) benign(0.118) TCGA-5P-A9JW-01 19 46367760 46367760 A T FOXA3 Missense_Mutation p.S16C 0.31 deleterious(0) unknown(0) TCGA-5P-A9JW-01 19 58574844 58574844 C G ZNF135 Missense_Mutation p.S76C 0.31 deleterious(0.01) possibly_damaging(0.874) TCGA-5P-A9JW-01 19 9082415 9082415 T A MUC16 Missense_Mutation p.T3134S 0.33 unknown(0) TCGA-5P-A9JW-01 1 115143493 115143493 G A DENND2C Missense_Mutation p.A635V 0.24 deleterious(0) probably_damaging(1) TCGA-5P-A9JW-01 1 151804260 151804260 C G RORC 5'UTR 0.26 TCGA-5P-A9JW-01 1 160000177 160000177 G T PIGM 3'UTR 0.24 TCGA-5P-A9JW-01 1 17328590 17328590 A C ATP13A2 Missense_Mutation p.I215S 0.31 deleterious(0) benign(0.273) TCGA-5P-A9JW-01 1 183876147 183876147 T G RGL1 Missense_Mutation p.Y527D 0.27 deleterious(0) probably_damaging(0.979) TCGA-5P-A9JW-01 1 19184089 19184089 C T TAS1R2 Silent p.Q73Q 0.33 TCGA-5P-A9JW-01 1 214505414 214505414 G A SMYD2 Missense_Mutation p.V331M 0.35 tolerated(0.17) benign(0.001) TCGA-5P-A9JW-01 1 247070993 247070993 C - AHCTF1 Frame_Shift_Del p.R218Afs*7 0.18 TCGA-5P-A9JW-01 1 28240584 28240584 T G RPA2 Missense_Mutation p.E36A 0.28 tolerated(0.29) benign(0.317) TCGA-5P-A9JW-01 20 25755790 25755790 C A FAM182B Missense_Mutation p.V56L 0.05 deleterious_low_confidence(0.03) benign(0.205) TCGA-5P-A9JW-01 20 42315498 42315498 G T MYBL2 Nonsense_Mutation p.E96* 0.38 TCGA-5P-A9JW-01 20 55071740 55071740 G A GCNT7 Missense_Mutation p.R187C 0.29 deleterious(0) possibly_damaging(0.657) TCGA-5P-A9JW-01 20 57767884 57767884 G A ZNF831 Missense_Mutation p.G604S 0.35 tolerated(0.82) benign(0.009) TCGA-5P-A9JW-01 20 62737462 62737473 GGCCCGCAGCCT - NPBWR2 In_Frame_Del p.R238_A241del 0.16 TCGA-5P-A9JW-01 22 17990894 17990894 C G CECR2 Missense_Mutation p.S266C 0.27 deleterious(0) benign(0.03) TCGA-5P-A9JW-01 22 18022519 18022519 G T CECR2 Missense_Mutation p.C875F 0.33 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-5P-A9JW-01 22 42093132 42093132 C A C22orf46 3'UTR 0.22 TCGA-5P-A9JW-01 2 159170296 159170296 T C CCDC148 Missense_Mutation p.Y292C 0.33 deleterious(0.03) probably_damaging(0.966) TCGA-5P-A9JW-01 2 174829164 174829164 T C SP3 Missense_Mutation p.N42S 0.21 tolerated(0.13) benign(0) TCGA-5P-A9JW-01 2 240954246 240954246 G A NDUFA10 Silent p.V193V 0.24 TCGA-5P-A9JW-01 2 47601159 47601159 A C EPCAM Missense_Mutation p.I133L 0.29 tolerated(1) benign(0.01) TCGA-5P-A9JW-01 2 55826141 55826141 T G SMEK2 Missense_Mutation p.Q111P 0.23 deleterious(0) possibly_damaging(0.61) TCGA-5P-A9JW-01 2 96852507 96852507 G T STARD7 Missense_Mutation p.N358K 0.31 tolerated_low_confidence(0.51) benign(0.005) TCGA-5P-A9JW-01 3 113786834 113786834 G A QTRTD1 Missense_Mutation p.G98D 0.34 deleterious(0) probably_damaging(0.996) TCGA-5P-A9JW-01 3 123452791 123452791 C T MYLK Missense_Mutation p.R351K 0.34 tolerated(1) benign(0.044) TCGA-5P-A9JW-01 3 123663747 123663747 T G CCDC14 Missense_Mutation p.E438A 0.28 deleterious(0) possibly_damaging(0.801) TCGA-5P-A9JW-01 3 12977447 12977447 G A IQSEC1 Missense_Mutation p.R371W 0.23 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-5P-A9JW-01 3 186953373 186953373 G T MASP1 3'UTR 0.39 TCGA-5P-A9JW-01 3 196509506 196509506 T C PAK2 5'UTR 0.30 TCGA-5P-A9JW-01 3 37459681 37459681 T C C3orf35 Intron 0.11 TCGA-5P-A9JW-01 3 38182953 38182953 T C MYD88 3'UTR 0.29 TCGA-5P-A9JW-01 3 4355443 4355443 G C SETMAR Missense_Mutation p.E340Q 0.31 tolerated_low_confidence(0.33) benign(0.094) TCGA-5P-A9JW-01 3 52539392 52539397 CTGGAG A STAB1 Frame_Shift_Del p.L526Kfs*22 0.22 TCGA-5P-A9JW-01 3 53694259 53694259 C A CACNA1D Silent p.A241A 0.30 TCGA-5P-A9JW-01 3 71821688 71821688 C T PROK2 3'UTR 0.24 TCGA-5P-A9JW-01 4 140046428 140046428 G T ELF2 Missense_Mutation p.A43D 0.14 deleterious(0) probably_damaging(0.996) TCGA-5P-A9JW-01 4 177098210 177098210 C A WDR17 Missense_Mutation p.Q1190K 0.24 tolerated(0.18) probably_damaging(0.974) TCGA-5P-A9JW-01 4 185637572 185637572 G A CENPU Silent p.N199N 0.36 TCGA-5P-A9JW-01 4 38134807 38134807 A T TBC1D1 Nonsense_Mutation p.R1079* 0.32 TCGA-5P-A9JW-01 4 56841058 56841058 C T CEP135 Missense_Mutation p.H466Y 0.32 deleterious(0.01) benign(0.315) TCGA-5P-A9JW-01 4 81256926 81256926 G C C4orf22 Missense_Mutation p.D2H 0.23 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-5P-A9JW-01 5 109183439 109183439 T - MAN2A1 Frame_Shift_Del p.T976Qfs*9 0.23 TCGA-5P-A9JW-01 5 132032201 132032201 C G KIF3A 3'UTR 0.31 TCGA-5P-A9JW-01 5 132099512 132099512 G T SEPT8 Silent p.R140R 0.30 TCGA-5P-A9JW-01 5 142675051 142675052 AT - NR3C1 Frame_Shift_Del p.M667Efs*11 0.27 TCGA-5P-A9JW-01 5 180047224 180047224 G A FLT4 Silent p.L831L 0.31 TCGA-5P-A9JW-01 5 63257506 63257506 G T HTR1A Nonsense_Mutation p.S14* 0.31 TCGA-5P-A9JW-01 5 63257507 63257507 A G HTR1A Missense_Mutation p.S14P 0.30 tolerated_low_confidence(0.2) benign(0.079) TCGA-5P-A9JW-01 5 9052121 9052121 C G SEMA5A Silent p.S903S 0.33 TCGA-5P-A9JW-01 6 109697298 109697298 C T CD164 Missense_Mutation p.V117M 0.30 tolerated(0.22) benign(0.133) TCGA-5P-A9JW-01 6 31829963 31829963 C T NEU1 Silent p.Q55Q 0.21 TCGA-5P-A9JW-01 6 51889838 51889838 G C PKHD1 Silent p.L1590L 0.24 TCGA-5P-A9JW-01 6 74161674 74161674 A G MB21D1 Silent p.T77T 0.20 TCGA-5P-A9JW-01 7 115624558 115624558 G C TFEC 5'UTR 0.34 TCGA-5P-A9JW-01 7 142574503 142574503 T A TRPV6 Missense_Mutation p.Q192L 0.29 deleterious(0) probably_damaging(0.986) TCGA-5P-A9JW-01 7 149416721 149416721 C G KRBA1 5'UTR 0.23 TCGA-5P-A9JW-01 7 150554433 150554433 C A AOC1 Missense_Mutation p.P292H 0.26 deleterious(0.04) benign(0.005) TCGA-5P-A9JW-01 7 21639539 21639539 A T DNAH11 Silent p.T934T 0.33 TCGA-5P-A9JW-01 7 43663376 43663376 A T STK17A Missense_Mutation p.E270V 0.24 deleterious(0) probably_damaging(0.965) TCGA-5P-A9JW-01 7 82465003 82465003 G A PCLO Silent p.V4743V 0.30 TCGA-5P-A9JW-01 8 125562081 125562081 T A NDUFB9 Nonsense_Mutation p.L163* 0.31 TCGA-5P-A9JW-01 8 12886088 12886088 T C KIAA1456 3'UTR 0.38 TCGA-5P-A9JW-01 8 13357626 13357626 G A DLC1 5'UTR 0.24 TCGA-5P-A9JW-01 8 144657205 144657205 C T NAPRT1 Missense_Mutation p.S502N 0.31 tolerated(0.45) benign(0.003) TCGA-5P-A9JW-01 8 19809403 19809405 GCG - LPL In_Frame_Del p.A125del 0.30 TCGA-5P-A9JW-01 8 21608372 21608372 G T GFRA2 Nonsense_Mutation p.C174* 0.36 TCGA-5P-A9JW-01 8 23294697 23294697 T C ENTPD4 Missense_Mutation p.D375G 0.31 tolerated(0.07) probably_damaging(1) TCGA-5P-A9JW-01 9 106874013 106874013 A G SMC2 Missense_Mutation p.E391G 0.30 tolerated(0.24) benign(0.009) TCGA-5P-A9JW-01 9 131670150 131670150 A T LRRC8A Missense_Mutation p.E236V 0.09 deleterious(0) probably_damaging(0.987) TCGA-5P-A9JW-01 9 89763782 89763782 C G C9orf170 Missense_Mutation p.S46C 0.30 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-5P-A9JW-01 9 95165578 95165578 A G OGN Missense_Mutation p.F38L 0.29 tolerated(0.5) benign(0.002) TCGA-5P-A9JW-01 X 119004538 119004538 G A RNF113A 3'UTR 0.66 TCGA-5P-A9JW-01 X 131207116 131207118 TCA CC MST4 Frame_Shift_Del p.K409Sfs*31 0.28 TCGA-5P-A9JY-01 10 104679232 104679232 T - CNNM2 Frame_Shift_Del p.I332Tfs*15 0.31 TCGA-5P-A9JY-01 10 134219456 134219456 C T PWWP2B Silent p.D484D 0.07 TCGA-5P-A9JY-01 10 3193438 3193438 C G PITRM1 Splice_Site p.X580_splice 0.49 TCGA-5P-A9JY-01 10 46264959 46264959 A T FAM21C Missense_Mutation p.E644D 0.38 tolerated(0.22) benign(0.002) TCGA-5P-A9JY-01 10 50532215 50532217 TCA - C10orf71 In_Frame_Del p.I543del 0.38 TCGA-5P-A9JY-01 10 62551998 62551998 T C CDK1 Missense_Mutation p.L249P 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-5P-A9JY-01 10 87407232 87407232 C - GRID1 Intron 0.29 TCGA-5P-A9JY-01 10 89685305 89685305 T A PTEN Missense_Mutation p.I67K 0.02 deleterious(0) probably_damaging(0.996) TCGA-5P-A9JY-01 10 96447963 96447965 AGA G CYP2C18 Frame_Shift_Del p.K138Rfs*27 0.31 TCGA-5P-A9JY-01 11 102562558 102562558 C G MMP27 Missense_Mutation p.S494T 0.15 tolerated_low_confidence(0.06) benign(0.219) TCGA-5P-A9JY-01 11 124121214 124121214 A T OR8G1 Intron 0.27 TCGA-5P-A9JY-01 11 208817 208817 G T RIC8A 5'UTR 0.45 TCGA-5P-A9JY-01 11 3111822 3111822 G C OSBPL5 Silent p.L788L 0.54 TCGA-5P-A9JY-01 11 3239681 3239681 G A MRGPRG Silent p.A121A 0.46 TCGA-5P-A9JY-01 11 33083259 33083259 G T TCP11L1 Missense_Mutation p.R320M 0.44 deleterious(0.01) probably_damaging(0.918) TCGA-5P-A9JY-01 11 4143450 4143450 G C RRM1 Missense_Mutation p.S373T 0.38 deleterious_low_confidence(0.02) benign(0.001) TCGA-5P-A9JY-01 11 605692 605692 C T PHRF1 Silent p.P473P 0.40 TCGA-5P-A9JY-01 11 94279515 94279515 G C FUT4 3'UTR 0.40 TCGA-5P-A9JY-01 12 111951196 111951196 G C ATXN2 Missense_Mutation p.P668R 0.41 probably_damaging(0.924) TCGA-5P-A9JY-01 12 114377884 114377884 A T RBM19 Missense_Mutation p.F607I 0.12 deleterious(0) probably_damaging(0.998) TCGA-5P-A9JY-01 12 123052914 123052914 C T KNTC1 Missense_Mutation p.H571Y 0.47 tolerated(0.16) benign(0.001) TCGA-5P-A9JY-01 12 6672800 6672803 GGGG - NOP2 Frame_Shift_Del p.P255Lfs*45 0.43 TCGA-5P-A9JY-01 12 67696393 67696393 C A CAND1 Missense_Mutation p.Q431K 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-5P-A9JY-01 12 78593299 78593299 G T NAV3 Missense_Mutation p.D2213Y 0.37 deleterious(0) possibly_damaging(0.756) TCGA-5P-A9JY-01 13 115051803 115051803 T C UPF3A Missense_Mutation p.F150L 0.39 deleterious(0) possibly_damaging(0.62) TCGA-5P-A9JY-01 13 31728852 31728852 T C HSPH1 Missense_Mutation p.Q116R 0.48 deleterious(0) probably_damaging(0.996) TCGA-5P-A9JY-01 14 102675867 102675867 A G WDR20 Missense_Mutation p.I485V 0.56 tolerated(0.8) benign(0) TCGA-5P-A9JY-01 14 21679430 21679430 C A HNRNPC Missense_Mutation p.E291D 0.43 tolerated_low_confidence(0.07) probably_damaging(0.952) TCGA-5P-A9JY-01 14 56079186 56079186 C G KTN1 Silent p.G140G 0.44 TCGA-5P-A9JY-01 14 92403395 92403395 T C FBLN5 Missense_Mutation p.Y92C 0.46 tolerated(0.17) benign(0.003) TCGA-5P-A9JY-01 15 35196623 35196623 T G AQR Missense_Mutation p.T639P 0.50 tolerated(0.15) possibly_damaging(0.787) TCGA-5P-A9JY-01 15 41709461 41709461 G C RTF1 Missense_Mutation p.V50L 0.46 tolerated(0.39) benign(0.004) TCGA-5P-A9JY-01 15 63632589 63632589 G A CA12 Silent p.T215T 0.23 TCGA-5P-A9JY-01 15 65943145 65943145 G A SLC24A1 Silent p.E886E 0.05 TCGA-5P-A9JY-01 15 75341008 75341009 TT - PPCDC Frame_Shift_Del p.F159Wfs*17 0.27 TCGA-5P-A9JY-01 16 12571579 12571579 T A SNX29 Missense_Mutation p.Y681N 0.58 deleterious(0) benign(0.404) TCGA-5P-A9JY-01 16 3594306 3594306 T C NLRC3 Missense_Mutation p.D978G 0.60 deleterious(0.01) probably_damaging(0.955) TCGA-5P-A9JY-01 16 4637082 4637082 A T C16orf96 Missense_Mutation p.N799Y 0.63 deleterious(0) possibly_damaging(0.844) TCGA-5P-A9JY-01 16 4927063 4927068 CATCGT - UBN1 In_Frame_Del p.I1073_V1074del 0.45 TCGA-5P-A9JY-01 16 57147302 57147317 CTCTTTGACCAGGACA - CPNE2 Frame_Shift_Del p.L95Sfs*35 0.14 TCGA-5P-A9JY-01 16 75688221 75688221 G T TERF2IP Nonsense_Mutation p.E241* 0.34 TCGA-5P-A9JY-01 16 849062 849062 C T GNG13 Missense_Mutation p.V6M 0.57 tolerated(0.07) benign(0.14) TCGA-5P-A9JY-01 16 9196862 9196862 G A C16orf72 Missense_Mutation p.R110Q 0.34 deleterious(0.01) probably_damaging(0.975) TCGA-5P-A9JY-01 17 29654742 29654742 G A NF1 Missense_Mutation p.E1832K 0.27 deleterious(0.01) possibly_damaging(0.887) TCGA-5P-A9JY-01 17 36891478 36891482 AAGTT - PCGF2 Frame_Shift_Del p.T344R 0.26 TCGA-5P-A9JY-01 17 39324382 39324382 A T KRTAP4-3 Missense_Mutation p.C15S 0.69 deleterious(0) unknown(0) TCGA-5P-A9JY-01 17 40629677 40629677 G T ATP6V0A1 Missense_Mutation p.Q148H 0.55 tolerated(0.14) possibly_damaging(0.694) TCGA-5P-A9JY-01 17 43483118 43483118 T C ARHGAP27 5'UTR 0.51 TCGA-5P-A9JY-01 17 44833327 44833327 T G NSF 3'UTR 0.31 TCGA-5P-A9JY-01 17 4871090 4871090 G A SPAG7 Silent p.L4L 0.27 TCGA-5P-A9JY-01 17 78356798 78356798 A G RNF213 Silent p.T4666T 0.61 TCGA-5P-A9JY-01 17 79193680 79193680 C T AZI1 Silent p.L59L 0.15 TCGA-5P-A9JY-01 17 8404183 8404183 G T MYH10 Silent p.A1235A 0.35 TCGA-5P-A9JY-01 18 32920383 32920383 G A ZNF24 Missense_Mutation p.R78C 0.41 tolerated(0.19) possibly_damaging(0.898) TCGA-5P-A9JY-01 18 61324647 61324647 C T SERPINB3 Splice_Site p.X157_splice 0.28 TCGA-5P-A9JY-01 19 13915605 13915605 G T ZSWIM4 Splice_Site p.X119_splice 0.09 TCGA-5P-A9JY-01 19 17881335 17881335 G C FCHO1 Missense_Mutation p.M146I 0.41 tolerated(0.25) benign(0.011) TCGA-5P-A9JY-01 19 3019295 3019295 G T TLE2 Missense_Mutation p.A179D 0.44 tolerated(0.13) benign(0.022) TCGA-5P-A9JY-01 19 36727964 36727964 G T ZNF146 Missense_Mutation p.G208C 0.34 deleterious(0) probably_damaging(1) TCGA-5P-A9JY-01 19 4357351 4357354 GATG T MPND In_Frame_Del p.Q366_M367delinsH 0.41 TCGA-5P-A9JY-01 19 4700253 4700253 T G DPP9 Missense_Mutation p.E350A 0.47 deleterious(0) probably_damaging(0.996) TCGA-5P-A9JY-01 19 4839324 4839324 G T PLIN3 Silent p.A395A 0.39 TCGA-5P-A9JY-01 19 8615148 8615148 G C MYO1F Missense_Mutation p.R333G 0.41 deleterious(0.03) possibly_damaging(0.803) TCGA-5P-A9JY-01 19 932539 932539 C T ARID3A Missense_Mutation p.P164S 0.50 tolerated_low_confidence(0.74) benign(0.004) TCGA-5P-A9JY-01 1 1141898 1141898 C A TNFRSF18 Silent p.L18L 0.49 TCGA-5P-A9JY-01 1 11562062 11562062 C T PTCHD2 Missense_Mutation p.S338L 0.43 deleterious(0) probably_damaging(0.996) TCGA-5P-A9JY-01 1 11585336 11585336 G T PTCHD2 Silent p.V860V 0.36 TCGA-5P-A9JY-01 1 12318000 12318000 A T VPS13D Missense_Mutation p.E317V 0.38 probably_damaging(0.943) TCGA-5P-A9JY-01 1 153084937 153084937 C T SPRR2F 3'UTR 0.17 TCGA-5P-A9JY-01 1 154315937 154315937 C G ATP8B2 Missense_Mutation p.P584A 0.43 deleterious(0.03) possibly_damaging(0.62) TCGA-5P-A9JY-01 1 161198920 161198920 C G TOMM40L 3'UTR 0.40 TCGA-5P-A9JY-01 1 170967558 170967558 G T MROH9 Intron 0.35 TCGA-5P-A9JY-01 1 183097856 183097856 A G LAMC1 Missense_Mutation p.D1084G 0.40 deleterious(0.05) benign(0.005) TCGA-5P-A9JY-01 1 211654560 211654576 TGTGCTGGCCAGCCAGC - RD3 Frame_Shift_Del p.S61Tfs*6 0.34 TCGA-5P-A9JY-01 1 23696194 23696194 C T C1orf213 3'UTR 0.57 TCGA-5P-A9JY-01 1 24124946 24124946 T C GALE Intron 0.29 TCGA-5P-A9JY-01 1 249142997 249142997 G A ZNF672 3'UTR 0.42 TCGA-5P-A9JY-01 1 27685320 27685320 C A MAP3K6 Missense_Mutation p.Q821H 0.48 tolerated(0.1) possibly_damaging(0.566) TCGA-5P-A9JY-01 1 35657092 35657092 T C SFPQ Silent p.G289G 0.39 TCGA-5P-A9JY-01 1 39469081 39469081 C A AKIRIN1 Missense_Mutation p.P187T 0.37 tolerated(0.08) possibly_damaging(0.818) TCGA-5P-A9JY-01 1 55604356 55604356 A G USP24 Silent p.H951H 0.49 TCGA-5P-A9JY-01 1 6527606 6527606 T C PLEKHG5 3'UTR 0.49 TCGA-5P-A9JY-01 1 71532486 71532486 C G ZRANB2 Missense_Mutation p.R301T 0.34 deleterious_low_confidence(0) unknown(0) TCGA-5P-A9JY-01 1 7845028 7845028 T - PER3 Frame_Shift_Del p.F31Sfs*32 0.28 TCGA-5P-A9JY-01 1 85040112 85040112 G A CTBS 5'UTR 0.07 TCGA-5P-A9JY-01 1 99127306 99127307 - C SNX7 Frame_Shift_Ins p.S8Ifs*81 0.23 TCGA-5P-A9JY-01 20 11898938 11898938 G T BTBD3 Missense_Mutation p.K5N 0.15 deleterious_low_confidence(0) benign(0.066) TCGA-5P-A9JY-01 20 62038497 62038497 C T KCNQ2 Missense_Mutation p.A707T 0.12 tolerated(0.5) benign(0.001) TCGA-5P-A9JY-01 21 39671467 39671468 - A KCNJ15 Frame_Shift_Ins p.E96Rfs*4 0.34 TCGA-5P-A9JY-01 21 46021419 46021419 C T KRTAP10-7 Missense_Mutation p.P300S 0.50 deleterious(0.02) unknown(0) TCGA-5P-A9JY-01 21 46917559 46917559 C - COL18A1 Frame_Shift_Del p.G1072Dfs*17 0.15 TCGA-5P-A9JY-01 22 21348913 21348913 G A LZTR1 Missense_Mutation p.R561H 0.19 deleterious(0) probably_damaging(0.994) TCGA-5P-A9JY-01 22 23047260 23047260 G C IGLV3-22 Missense_Mutation p.D100H 0.51 deleterious(0) probably_damaging(0.991) TCGA-5P-A9JY-01 22 38877266 38877266 A T KDELR3 Missense_Mutation p.Q134L 0.59 deleterious(0) probably_damaging(0.996) TCGA-5P-A9JY-01 22 38877267 38877267 G A KDELR3 Silent p.Q134Q 0.59 TCGA-5P-A9JY-01 22 38958351 38958351 A - DMC1 Frame_Shift_Del p.F89Lfs*24 0.32 TCGA-5P-A9JY-01 22 39887382 39887382 C A MGAT3 3'UTR 0.34 TCGA-5P-A9JY-01 22 46505745 46505745 G C FLJ27365 Missense_Mutation p.R113P 0.14 deleterious_low_confidence(0) unknown(0) TCGA-5P-A9JY-01 2 10091848 10091848 T G GRHL1 5'UTR 0.38 TCGA-5P-A9JY-01 2 179391818 179391818 C A TTN Missense_Mutation p.G35966V 0.46 TCGA-5P-A9JY-01 2 198360061 198360061 T G HSPD1 Missense_Mutation p.K156T 0.46 deleterious(0.02) possibly_damaging(0.889) TCGA-5P-A9JY-01 2 220027074 220027074 T C SLC23A3 Missense_Mutation p.Q503R 0.47 tolerated(0.45) benign(0.045) TCGA-5P-A9JY-01 2 230656737 230656737 C - TRIP12 Frame_Shift_Del p.Q1345Hfs*13 0.26 TCGA-5P-A9JY-01 2 234890560 234890561 - TTT TRPM8 Splice_Site p.X863_splice 0.50 TCGA-5P-A9JY-01 2 28460154 28460155 - TGCTCACCA BRE In_Frame_Ins p.T258_N259insMLT 0.44 TCGA-5P-A9JY-01 2 3523139 3523139 C T ADI1 Silent p.K40K 0.46 TCGA-5P-A9JY-01 2 48738524 48738524 A C PPP1R21 Missense_Mutation p.M744L 0.43 deleterious(0.02) probably_damaging(0.974) TCGA-5P-A9JY-01 2 61417473 61417473 T G USP34 Missense_Mutation p.Y3269S 0.44 tolerated(0.37) benign(0.004) TCGA-5P-A9JY-01 2 61448652 61448652 C T USP34 Silent p.L2628L 0.15 TCGA-5P-A9JY-01 3 12447494 12447494 C T PPARG Missense_Mutation p.H245Y 0.24 deleterious(0.05) benign(0.104) TCGA-5P-A9JY-01 3 127298938 127298938 G A TPRA1 Missense_Mutation p.P18S 0.33 tolerated(0.17) benign(0.001) TCGA-5P-A9JY-01 3 142840750 142840750 C - CHST2 Frame_Shift_Del p.R365Afs*83 0.22 TCGA-5P-A9JY-01 3 147106394 147106394 G C ZIC4 3'UTR 0.38 TCGA-5P-A9JY-01 3 183695342 183695342 G C ABCC5 Missense_Mutation p.S456C 0.25 deleterious(0) possibly_damaging(0.865) TCGA-5P-A9JY-01 3 38180443 38180443 C A MYD88 Silent p.A97A 0.24 TCGA-5P-A9JY-01 3 53914039 53914049 ACGTGAGGAAT G ACTR8 Frame_Shift_Del p.I71Pfs*20 0.26 TCGA-5P-A9JY-01 4 128942319 128942320 - G C4orf29 Intron 0.35 TCGA-5P-A9JY-01 4 2492121 2492121 A G RNF4 5'UTR 0.32 TCGA-5P-A9JY-01 4 57215435 57215435 C T AASDH Missense_Mutation p.V828M 0.47 deleterious(0.01) benign(0.213) TCGA-5P-A9JY-01 4 84376623 84376624 - G HELQ Frame_Shift_Ins p.L75Pfs*7 0.26 TCGA-5P-A9JY-01 4 85418816 85418816 C T NKX6-1 Missense_Mutation p.R189Q 0.42 tolerated(0.08) unknown(0) TCGA-5P-A9JY-01 4 91229870 91229871 - A CCSER1 Frame_Shift_Ins p.N146Kfs*13 0.29 TCGA-5P-A9JY-01 5 112851004 112851005 AG - YTHDC2 Frame_Shift_Del p.R75Sfs*15 0.30 TCGA-5P-A9JY-01 5 115167445 115167445 C T ATG12 3'UTR 0.31 TCGA-5P-A9JY-01 5 115428295 115428295 T A COMMD10 Silent p.I99I 0.49 TCGA-5P-A9JY-01 5 140719649 140719649 G A PCDHGA2 Missense_Mutation p.V371I 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.736) TCGA-5P-A9JY-01 5 73205422 73205422 G T ARHGEF28 Missense_Mutation p.Q1449H 0.36 deleterious(0) probably_damaging(0.999) TCGA-5P-A9JY-01 5 83402477 83402477 G A EDIL3 Missense_Mutation p.P214L 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-5P-A9JY-01 6 109315799 109315799 A G SESN1 Missense_Mutation p.F329S 0.38 tolerated(0.41) benign(0.006) TCGA-5P-A9JY-01 6 138657620 138657620 G T KIAA1244 Silent p.V2177V 0.37 TCGA-5P-A9JY-01 6 26459730 26459730 C A BTN2A1 Missense_Mutation p.P35H 0.44 deleterious(0.02) probably_damaging(0.942) TCGA-5P-A9JY-01 6 41119115 41119115 T A TREML1 Missense_Mutation p.E128D 0.46 tolerated(0.25) benign(0.014) TCGA-5P-A9JY-01 6 51890829 51890829 G A PKHD1 Missense_Mutation p.A1260V 0.34 tolerated(0.31) benign(0.016) TCGA-5P-A9JY-01 6 80737712 80737712 C T TTK Missense_Mutation p.P502L 0.42 deleterious(0) benign(0.028) TCGA-5P-A9JY-01 6 89793815 89793815 A T PNRC1 Missense_Mutation p.K295M 0.42 deleterious(0.05) probably_damaging(1) TCGA-5P-A9JY-01 7 107262631 107262631 T A BCAP29 3'UTR 0.33 TCGA-5P-A9JY-01 7 107262632 107262632 C T BCAP29 3'UTR 0.30 TCGA-5P-A9JY-01 7 107746348 107746348 G A LAMB4 Missense_Mutation p.R262W 0.59 deleterious(0) possibly_damaging(0.683) TCGA-5P-A9JY-01 7 108213747 108213747 C T DNAJB9 Nonsense_Mutation p.Q208* 0.23 TCGA-5P-A9JY-01 7 1132892 1132892 G A GPER1 3'UTR 0.34 TCGA-5P-A9JY-01 7 128470570 128470570 A C FLNC 5'UTR 0.67 TCGA-5P-A9JY-01 7 139056209 139056209 G T C7orf55-LUC7L2 Intron 0.28 TCGA-5P-A9JY-01 7 45726165 45726165 C T ADCY1 Missense_Mutation p.R783C 0.07 deleterious(0.01) possibly_damaging(0.677) TCGA-5P-A9JY-01 7 91761140 91761140 G T CYP51A1 Missense_Mutation p.A80D 0.32 deleterious(0) probably_damaging(0.949) TCGA-5P-A9JY-01 8 104432694 104432694 A G DCAF13 Intron 0.34 TCGA-5P-A9JY-01 8 135614212 135614212 A G ZFAT Missense_Mutation p.S584P 0.54 tolerated(0.34) benign(0.143) TCGA-5P-A9JY-01 8 144660509 144660510 - CCGGC NAPRT1 5'UTR 0.31 TCGA-5P-A9JY-01 8 144790026 144790026 T C CCDC166 Missense_Mutation p.Q85R 0.50 tolerated(0.11) benign(0.063) TCGA-5P-A9JY-01 8 144790027 144790027 G T CCDC166 Missense_Mutation p.Q85K 0.50 tolerated(0.08) possibly_damaging(0.574) TCGA-5P-A9JY-01 8 82606176 82606176 A G SLC10A5 Silent p.P344P 0.51 TCGA-5P-A9JY-01 9 111642434 111642434 A - IKBKAP Frame_Shift_Del p.Y1120Ifs*21 0.29 TCGA-5P-A9JY-01 9 135939799 135939799 C T CEL Silent p.A28A 0.06 TCGA-5P-A9JY-01 9 139996055 139996055 G - MAN1B1 Frame_Shift_Del p.A396Pfs*3 0.25 TCGA-5P-A9JY-01 9 141016005 141016005 C T CACNA1B Nonsense_Mutation p.Q2192* 0.46 TCGA-5P-A9JY-01 9 214408 214408 G T C9orf66 3'UTR 0.40 TCGA-5P-A9JY-01 9 214413 214413 A G C9orf66 3'UTR 0.42 TCGA-5P-A9JY-01 9 32467857 32467857 G A DDX58 Silent p.A696A 0.44 TCGA-5P-A9JY-01 9 35548396 35548396 C A RUSC2 Missense_Mutation p.H626Q 0.36 tolerated(0.52) benign(0) TCGA-5P-A9JY-01 X 40526005 40526005 T C MED14 Missense_Mutation p.I1078V 0.10 tolerated(0.51) benign(0.004) TCGA-5P-A9JZ-01 10 126515171 126515171 T G FAM175B Missense_Mutation p.I92S 0.25 deleterious(0) probably_damaging(0.943) TCGA-5P-A9JZ-01 10 33199326 33199326 C T ITGB1 Silent p.Q663Q 0.39 TCGA-5P-A9JZ-01 11 121498410 121498410 G A SORL1 Missense_Mutation p.A2171T 0.43 tolerated(0.19) possibly_damaging(0.867) TCGA-5P-A9JZ-01 11 123909026 123909026 C T OR10G7 Missense_Mutation p.R228H 0.08 tolerated(0.21) benign(0.027) TCGA-5P-A9JZ-01 11 64677319 64677320 - AA ATG2A Frame_Shift_Ins p.P648Sfs*27 0.34 TCGA-5P-A9JZ-01 11 82877690 82877690 A G PCF11 Missense_Mutation p.N584S 0.40 tolerated(0.15) possibly_damaging(0.633) TCGA-5P-A9JZ-01 11 85396249 85396262 GCTTCCTGTCTTCA T CCDC89 Frame_Shift_Del p.N304Kfs*18 0.29 TCGA-5P-A9JZ-01 12 100453755 100453755 A G UHRF1BP1L Missense_Mutation p.L539P 0.35 deleterious(0) probably_damaging(0.993) TCGA-5P-A9JZ-01 12 40940408 40940408 C - MUC19 3'UTR 0.26 TCGA-5P-A9JZ-01 13 29674966 29674966 G T MTUS2 Missense_Mutation p.G845C 0.31 deleterious(0) probably_damaging(1) TCGA-5P-A9JZ-01 13 29674967 29674967 G T MTUS2 Missense_Mutation p.G845V 0.31 deleterious(0) probably_damaging(1) TCGA-5P-A9JZ-01 14 104219447 104219447 G T PPP1R13B Missense_Mutation p.Q240K 0.33 tolerated(0.11) benign(0.085) TCGA-5P-A9JZ-01 15 28377879 28377879 C T HERC2 Missense_Mutation p.G4110R 0.35 probably_damaging(0.999) TCGA-5P-A9JZ-01 15 42678446 42678446 G C CAPN3 Missense_Mutation p.S154T 0.46 tolerated(0.11) benign(0.031) TCGA-5P-A9JZ-01 15 43816966 43816966 G C MAP1A Missense_Mutation p.V1099L 0.35 possibly_damaging(0.68) TCGA-5P-A9JZ-01 15 72767235 72767235 C T ARIH1 Silent p.G85G 0.07 TCGA-5P-A9JZ-01 17 4686223 4686223 C T TM4SF5 Missense_Mutation p.T157M 0.56 tolerated(0.06) benign(0.243) TCGA-5P-A9JZ-01 17 76411070 76411070 G T PGS1 Missense_Mutation p.V505L 0.26 deleterious(0.02) benign(0.221) TCGA-5P-A9JZ-01 17 8170960 8170960 C A PFAS Missense_Mutation p.A1120E 0.29 deleterious(0) probably_damaging(0.998) TCGA-5P-A9JZ-01 17 9632491 9632491 C T USP43 3'UTR 0.50 TCGA-5P-A9JZ-01 19 12921202 12921202 C A RNASEH2A Silent p.G207G 0.42 TCGA-5P-A9JZ-01 19 50097807 50097807 G T PRR12 Missense_Mutation p.G99V 0.09 benign(0.001) TCGA-5P-A9JZ-01 19 51301757 51301757 G C C19orf48 5'UTR 0.42 TCGA-5P-A9JZ-01 19 55710166 55710166 C T PTPRH Nonsense_Mutation p.W512* 0.42 TCGA-5P-A9JZ-01 19 7806665 7806665 C G CD209 3'UTR 0.33 TCGA-5P-A9JZ-01 1 156130786 156130786 G C SEMA4A Missense_Mutation p.R259T 0.31 deleterious(0.01) benign(0.102) TCGA-5P-A9JZ-01 1 205033767 205033767 G C CNTN2 Missense_Mutation p.D470H 0.37 deleterious(0) possibly_damaging(0.828) TCGA-5P-A9JZ-01 1 2121360 2121360 C A AL590822.2 5'UTR 0.31 TCGA-5P-A9JZ-01 1 26189318 26189318 T G PAQR7 Missense_Mutation p.Q338P 0.39 deleterious(0.01) benign(0.065) TCGA-5P-A9JZ-01 1 45295617 45295617 C T PTCH2 Missense_Mutation p.G300E 0.43 deleterious(0) probably_damaging(1) TCGA-5P-A9JZ-01 1 57372456 57372456 G A C8A Missense_Mutation p.G405S 0.39 tolerated(0.54) benign(0.063) TCGA-5P-A9JZ-01 20 44277251 44277251 A C WFDC11 3'UTR 0.43 TCGA-5P-A9JZ-01 20 52824563 52824563 C T PFDN4 5'UTR 0.31 TCGA-5P-A9JZ-01 22 30731504 30731513 AATCTTCACC - SF3A1 Frame_Shift_Del p.K741Nfs*112 0.26 TCGA-5P-A9JZ-01 2 136603847 136603847 G T MCM6 Silent p.I723I 0.34 TCGA-5P-A9JZ-01 2 216213834 216213834 G T ATIC Missense_Mutation p.K507N 0.35 tolerated(0.37) benign(0.002) TCGA-5P-A9JZ-01 2 220085096 220085096 C T ATG9A 3'UTR 0.38 TCGA-5P-A9JZ-01 2 220342166 220342166 A G SPEG Silent p.S1576S 0.37 TCGA-5P-A9JZ-01 2 65299543 65299543 T G CEP68 Missense_Mutation p.L438R 0.42 tolerated(0.12) benign(0.052) TCGA-5P-A9JZ-01 3 187003751 187003751 C T MASP1 Silent p.S33S 0.41 TCGA-5P-A9JZ-01 4 15539635 15539635 T C CC2D2A Silent p.D626D 0.34 TCGA-5P-A9JZ-01 4 176622905 176622905 G C GPM6A Missense_Mutation p.C17W 0.08 deleterious(0) probably_damaging(0.998) TCGA-5P-A9JZ-01 4 8470057 8470057 G T TRMT44 Missense_Mutation p.K637N 0.38 tolerated(0.3) benign(0.015) TCGA-5P-A9JZ-01 5 118788219 118788219 C A HSD17B4 5'Flank 0.40 TCGA-5P-A9JZ-01 5 139494272 139494272 G A PURA Missense_Mutation p.R169H 0.36 deleterious(0) probably_damaging(0.999) TCGA-5P-A9JZ-01 5 34945005 34945005 G A DNAJC21 Silent p.R339R 0.36 TCGA-5P-A9JZ-01 6 10687259 10687259 C A C6orf52 Missense_Mutation p.K70N 0.07 tolerated(0.48) benign(0.001) TCGA-5P-A9JZ-01 6 137468891 137468891 G A IL22RA2 Nonsense_Mutation p.R204* 0.43 TCGA-5P-A9JZ-01 6 44137019 44137019 G A CAPN11 Silent p.E30E 0.38 TCGA-5P-A9JZ-01 6 71567632 71567633 TA - SMAP1 Frame_Shift_Del p.M324Gfs*84 0.29 TCGA-5P-A9JZ-01 7 105624700 105624700 G A CDHR3 Missense_Mutation p.D160N 0.13 deleterious(0) probably_damaging(0.999) TCGA-5P-A9JZ-01 7 128363339 128363339 T - FAM71F1 Frame_Shift_Del p.F260Lfs*10 0.22 TCGA-5P-A9JZ-01 7 144015742 144015744 CTT - OR2A1 In_Frame_Del p.F177del 0.17 TCGA-5P-A9JZ-01 7 148311173 148311173 T C C7orf33 Missense_Mutation p.F82L 0.65 tolerated_low_confidence(0.22) benign(0.008) TCGA-5P-A9JZ-01 7 55221781 55221781 C T EGFR Silent p.Y275Y 0.29 TCGA-5P-A9JZ-01 8 125580765 125580765 A G MTSS1 Missense_Mutation p.I158T 0.07 deleterious(0.02) possibly_damaging(0.619) TCGA-5P-A9JZ-01 8 127569437 127569437 C T FAM84B Silent p.P66P 0.04 TCGA-5P-A9JZ-01 8 144645196 144645196 G A GSDMD 3'UTR 0.26 TCGA-5P-A9JZ-01 8 145736222 145736222 T A MFSD3 Missense_Mutation p.L334Q 0.43 deleterious(0) probably_damaging(0.938) TCGA-5P-A9JZ-01 9 140006480 140006480 G T DPP7 Missense_Mutation p.A351D 0.38 deleterious(0) probably_damaging(0.976) TCGA-5P-A9JZ-01 9 140006481 140006481 C A DPP7 Missense_Mutation p.A351S 0.38 tolerated(0.06) possibly_damaging(0.505) TCGA-5P-A9JZ-01 9 21994432 21994432 C G RP11-149I2.4 5'Flank 0.42 TCGA-5P-A9JZ-01 9 35809716 35809716 A T NPR2 3'UTR 0.36 TCGA-5P-A9JZ-01 X 150349201 150349201 C T GPR50 Silent p.A382A 0.34 TCGA-5P-A9JZ-01 X 151897110 151897110 A G MAGEA12 3'Flank 0.44 TCGA-5P-A9JZ-01 X 46434241 46434241 A G CHST7 Missense_Mutation p.Q292R 0.41 tolerated(0.25) benign(0.01) TCGA-5P-A9JZ-01 X 82764651 82764651 T G POU3F4 3'UTR 0.37 TCGA-5P-A9K0-01 10 116615097 116615097 C A FAM160B1 Missense_Mutation p.Q649K 0.31 deleterious(0) probably_damaging(0.967) TCGA-5P-A9K0-01 10 120789990 120789990 T A NANOS1 Missense_Mutation p.L226H 0.75 deleterious(0) benign(0.355) TCGA-5P-A9K0-01 10 135013101 135013101 C T KNDC1 Silent p.S966S 0.50 TCGA-5P-A9K0-01 10 21785503 21785503 C A CASC10 Intron 0.50 TCGA-5P-A9K0-01 10 52751105 52751105 G T PRKG1 5'UTR 0.32 TCGA-5P-A9K0-01 10 72534001 72534001 T G TBATA Missense_Mutation p.E295D 0.40 tolerated(0.27) benign(0.003) TCGA-5P-A9K0-01 10 89311958 89311958 A G MINPP1 Missense_Mutation p.K396R 0.32 tolerated(0.5) benign(0.005) TCGA-5P-A9K0-01 10 98741057 98741057 C - C10orf12 5'UTR 0.35 TCGA-5P-A9K0-01 11 102818617 102818617 T A MMP13 Intron 0.46 TCGA-5P-A9K0-01 11 12535059 12535059 A T PARVA Intron 0.42 TCGA-5P-A9K0-01 11 134175113 134175113 G T GLB1L3 Intron 0.17 TCGA-5P-A9K0-01 11 6238643 6238643 G T FAM160A2 Missense_Mutation p.P739T 0.37 deleterious(0.02) probably_damaging(0.939) TCGA-5P-A9K0-01 11 64410176 64410176 G A NRXN2 Intron 0.33 TCGA-5P-A9K0-01 12 100042138 100042138 G T FAM71C Silent p.V62V 0.27 TCGA-5P-A9K0-01 12 111348861 111348861 G A MYL2 3'UTR 0.33 TCGA-5P-A9K0-01 12 111348862 111348862 C G MYL2 3'UTR 0.32 TCGA-5P-A9K0-01 12 48379569 48379569 G C COL2A1 Missense_Mutation p.P541R 0.62 possibly_damaging(0.842) TCGA-5P-A9K0-01 12 7261763 7261763 C T C1RL Missense_Mutation p.R5K 0.14 tolerated_low_confidence(0.65) benign(0.01) TCGA-5P-A9K0-01 13 103301430 103301430 G A TPP2 Silent p.K934K 0.33 TCGA-5P-A9K0-01 13 21217615 21217615 C G IFT88 Silent p.P577P 0.37 TCGA-5P-A9K0-01 13 28830508 28830508 A T PAN3 Missense_Mutation p.R360S 0.39 tolerated(0.06) probably_damaging(0.966) TCGA-5P-A9K0-01 13 32527398 32527398 G A EEF1DP3 RNA 0.47 TCGA-5P-A9K0-01 13 46554017 46554017 C A ZC3H13 Missense_Mutation p.D615Y 0.31 probably_damaging(0.999) TCGA-5P-A9K0-01 14 45628482 45628482 A G FANCM Missense_Mutation p.E527G 0.22 deleterious(0) possibly_damaging(0.506) TCGA-5P-A9K0-01 14 60976418 60976418 A G SIX6 Missense_Mutation p.K101R 0.36 tolerated(0.24) benign(0.023) TCGA-5P-A9K0-01 14 80669452 80669452 A G DIO2 Silent p.P170P 0.42 TCGA-5P-A9K0-01 15 28999700 28999700 T A WHAMMP2 Intron 0.19 TCGA-5P-A9K0-01 15 52699526 52699526 C T MYO5A Silent p.K303K 0.34 TCGA-5P-A9K0-01 15 65563347 65563347 T C PARP16 Missense_Mutation p.K80E 0.40 tolerated(0.77) benign(0.001) TCGA-5P-A9K0-01 15 65943145 65943145 G A SLC24A1 Silent p.E886E 0.05 TCGA-5P-A9K0-01 15 68620582 68620582 C T ITGA11 Silent p.Q640Q 0.45 TCGA-5P-A9K0-01 16 10274246 10274246 G T GRIN2A Missense_Mutation p.T8N 0.31 tolerated(0.1) benign(0.013) TCGA-5P-A9K0-01 16 18434370 18434370 T A NPIPA8 5'Flank 0.35 TCGA-5P-A9K0-01 16 31486006 31486014 CCTCAGCCG - TGFB1I1 In_Frame_Del p.L215_R217del 0.44 TCGA-5P-A9K0-01 16 57099127 57099127 G A NLRC5 Silent p.V1386V 0.54 TCGA-5P-A9K0-01 16 824858 824858 C G MSLNL Missense_Mutation p.A572P 0.34 probably_damaging(0.931) TCGA-5P-A9K0-01 16 84050195 84050197 AAC - SLC38A8 In_Frame_Del p.F364del 0.42 TCGA-5P-A9K0-01 17 12028658 12028658 C T MAP2K4 Silent p.R287R 0.51 TCGA-5P-A9K0-01 17 39084730 39084730 G A KRT23 Missense_Mutation p.H256Y 0.19 deleterious(0) probably_damaging(0.949) TCGA-5P-A9K0-01 17 42248107 42248107 G A ASB16 5'UTR 0.33 TCGA-5P-A9K0-01 17 61498264 61498264 G T TANC2 Missense_Mutation p.A1641S 0.17 tolerated_low_confidence(0.45) benign(0.003) TCGA-5P-A9K0-01 17 65720229 65720229 T G NOL11 Nonsense_Mutation p.L195* 0.50 TCGA-5P-A9K0-01 17 66039316 66039316 T C KPNA2 Missense_Mutation p.L256S 0.54 deleterious(0.03) possibly_damaging(0.766) TCGA-5P-A9K0-01 18 59221635 59221635 A C CDH20 Missense_Mutation p.I705L 0.39 tolerated(0.42) probably_damaging(0.987) TCGA-5P-A9K0-01 19 17986910 17986910 C A SLC5A5 Silent p.L231L 0.55 TCGA-5P-A9K0-01 19 18309591 18309591 A C RAB3A Missense_Mutation p.M139R 0.54 tolerated(0.11) benign(0.004) TCGA-5P-A9K0-01 19 30106331 30106331 G T POP4 3'UTR 0.41 TCGA-5P-A9K0-01 19 3740744 3740744 G A TJP3 Missense_Mutation p.R618Q 0.43 deleterious(0.01) probably_damaging(0.982) TCGA-5P-A9K0-01 19 4343749 4343749 C A MPND Missense_Mutation p.P18T 0.52 deleterious_low_confidence(0.03) unknown(0) TCGA-5P-A9K0-01 19 44039436 44039442 CGCACAG - ZNF575 Frame_Shift_Del p.H113Afs*? 0.29 TCGA-5P-A9K0-01 19 46308112 46308112 T G RSPH6A Missense_Mutation p.I351L 0.35 tolerated(1) benign(0.001) TCGA-5P-A9K0-01 19 57088479 57088481 TTA CT ZNF470 Frame_Shift_Del p.K229Nfs*127 0.29 TCGA-5P-A9K0-01 1 109440639 109440645 GTTTTGG - GPSM2 Frame_Shift_Del p.S158Ifs*8 0.25 TCGA-5P-A9K0-01 1 147086326 147086331 CCATGG - BCL9 In_Frame_Del p.H158_G159del 0.34 TCGA-5P-A9K0-01 1 150483676 150483676 T A ECM1 Splice_Site p.X263_splice 0.33 TCGA-5P-A9K0-01 1 175129943 175129943 C T KIAA0040 Silent p.K69K 0.24 TCGA-5P-A9K0-01 1 182357774 182357774 G - GLUL Frame_Shift_Del p.I33Mfs*81 0.28 TCGA-5P-A9K0-01 1 248512735 248512735 T G OR14C36 Missense_Mutation p.F220C 0.39 deleterious(0) probably_damaging(0.995) TCGA-5P-A9K0-01 1 40230481 40230481 C T BMP8B Missense_Mutation p.V228M 0.27 tolerated(0.15) benign(0.259) TCGA-5P-A9K0-01 1 55165833 55165833 T C MROH7 Intron 0.40 TCGA-5P-A9K0-01 1 9781589 9781589 G A PIK3CD Silent p.L633L 0.47 TCGA-5P-A9K0-01 20 13976287 13976287 G T MACROD2 5'UTR 0.63 TCGA-5P-A9K0-01 20 13976288 13976288 C A MACROD2 5'UTR 0.63 TCGA-5P-A9K0-01 20 35864988 35864988 C A RPN2 Missense_Mutation p.L587M 0.30 deleterious(0.03) probably_damaging(1) TCGA-5P-A9K0-01 20 3766512 3766512 G T CENPB Missense_Mutation p.Q207K 0.58 tolerated(1) unknown(0) TCGA-5P-A9K0-01 21 32185474 32185474 G - KRTAP8-1 Frame_Shift_Del p.P22Rfs*108 0.23 TCGA-5P-A9K0-01 21 37741433 37741433 A C MORC3 Silent p.A589A 0.48 TCGA-5P-A9K0-01 22 19956092 19956092 C G COMT Missense_Mutation p.L217V 0.37 tolerated(0.14) benign(0.326) TCGA-5P-A9K0-01 2 125204404 125204404 C G CNTNAP5 Missense_Mutation p.H270D 0.33 deleterious(0) probably_damaging(0.983) TCGA-5P-A9K0-01 2 198272752 198272752 T C SF3B1 Silent p.E403E 0.23 TCGA-5P-A9K0-01 2 20173442 20173442 T C WDR35 Missense_Mutation p.Y255C 0.46 tolerated(0.16) benign(0.001) TCGA-5P-A9K0-01 2 218683236 218683236 A G TNS1 Silent p.A1169A 0.29 TCGA-5P-A9K0-01 2 38812955 38812955 T C HNRNPLL Missense_Mutation p.E121G 0.48 tolerated(0.16) benign(0.021) TCGA-5P-A9K0-01 2 42990746 42990746 G A OXER1 Silent p.L192L 0.24 TCGA-5P-A9K0-01 2 46739823 46739823 T G ATP6V1E2 Missense_Mutation p.K10Q 0.31 deleterious(0.02) benign(0.378) TCGA-5P-A9K0-01 2 46739824 46739824 T A ATP6V1E2 Missense_Mutation p.K9N 0.27 deleterious(0.02) benign(0.004) TCGA-5P-A9K0-01 2 73438089 73438089 T G NOTO 3'UTR 0.28 TCGA-5P-A9K0-01 3 138724832 138724832 A G PRR23A Silent p.D93D 0.42 TCGA-5P-A9K0-01 3 164906764 164906764 G T SLITRK3 Missense_Mutation p.P619T 0.25 tolerated(0.58) benign(0.001) TCGA-5P-A9K0-01 3 167086364 167086364 T A ZBBX Splice_Site p.X23_splice 0.42 TCGA-5P-A9K0-01 3 169701000 169701000 C G SEC62 Missense_Mutation p.L170V 0.32 deleterious(0) possibly_damaging(0.694) TCGA-5P-A9K0-01 3 183887831 183887831 C T DVL3 Silent p.S512S 0.41 TCGA-5P-A9K0-01 3 184654055 184654055 T C VPS8 Missense_Mutation p.C974R 0.43 tolerated(0.58) benign(0.001) TCGA-5P-A9K0-01 3 186961355 186961355 G A MASP1 Missense_Mutation p.T382I 0.31 deleterious(0) benign(0.266) TCGA-5P-A9K0-01 3 195800989 195800990 - AT TFRC Frame_Shift_Ins p.M82Ifs*2 0.19 TCGA-5P-A9K0-01 3 33155650 33155650 A C CRTAP Missense_Mutation p.Q27H 0.45 deleterious(0) probably_damaging(0.999) TCGA-5P-A9K0-01 3 38167691 38167691 C G ACAA1 Missense_Mutation p.G320A 0.45 deleterious(0) probably_damaging(0.997) TCGA-5P-A9K0-01 3 49338037 49338037 A C USP4 Missense_Mutation p.L459V 0.41 tolerated(0.06) possibly_damaging(0.503) TCGA-5P-A9K0-01 3 51431290 51431290 T C RBM15B Silent p.L820L 0.35 TCGA-5P-A9K0-01 4 38869705 38869705 T C FAM114A1 Intron 0.35 TCGA-5P-A9K0-01 4 46390760 46390760 A - GABRA2 Intron 0.27 TCGA-5P-A9K0-01 4 52861896 52861896 G T LRRC66 Missense_Mutation p.A431D 0.47 deleterious(0) probably_damaging(0.927) TCGA-5P-A9K0-01 4 65274879 65274880 - T TECRL Frame_Shift_Ins p.I64Nfs*3 0.27 TCGA-5P-A9K0-01 4 66230804 66230806 CTA TT EPHA5 Frame_Shift_Del p.L722Qfs*18 0.27 TCGA-5P-A9K0-01 5 137527594 137527594 C G CDC23 Missense_Mutation p.G440A 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-5P-A9K0-01 5 140308835 140308835 G T PCDHAC1 Silent p.G786G 0.07 TCGA-5P-A9K0-01 5 140480073 140480073 G A PCDHB3 5'Flank 0.27 TCGA-5P-A9K0-01 5 37226992 37226992 G T C5orf42 Missense_Mutation p.L569M 0.43 deleterious(0) probably_damaging(0.998) TCGA-5P-A9K0-01 5 37226993 37226993 T C C5orf42 Silent p.E568E 0.42 TCGA-5P-A9K0-01 5 483552 483552 G A SLC9A3 Silent p.N326N 0.30 TCGA-5P-A9K0-01 5 55439741 55439741 G A ANKRD55 Missense_Mutation p.H167Y 0.42 deleterious(0) probably_damaging(0.997) TCGA-5P-A9K0-01 5 89705554 89705554 G A CETN3 5'UTR 0.42 TCGA-5P-A9K0-01 6 119345322 119345322 A - FAM184A Frame_Shift_Del p.F272Lfs*31 0.25 TCGA-5P-A9K0-01 6 138727155 138727155 G T HEBP2 Missense_Mutation p.G96C 0.32 deleterious(0.03) probably_damaging(0.916) TCGA-5P-A9K0-01 6 18121925 18121925 C T NHLRC1 Missense_Mutation p.G305S 0.43 tolerated(0.88) benign(0.009) TCGA-5P-A9K0-01 6 26597296 26597296 A C ABT1 Missense_Mutation p.Q29P 0.41 tolerated(0.13) benign(0.002) TCGA-5P-A9K0-01 6 350921 350921 G A DUSP22 3'UTR 0.07 TCGA-5P-A9K0-01 6 35442933 35442933 A - TEAD3 Frame_Shift_Del p.V399Gfs*45 0.24 TCGA-5P-A9K0-01 6 3723713 3723713 G T PXDC1 3'UTR 0.29 TCGA-5P-A9K0-01 6 3723879 3723879 G T PXDC1 Missense_Mutation p.P224T 0.41 tolerated_low_confidence(0.1) probably_damaging(0.991) TCGA-5P-A9K0-01 6 41704737 41704737 G A PGC Silent p.N340N 0.32 TCGA-5P-A9K0-01 6 56564500 56564500 T - DST Frame_Shift_Del p.N122Ifs*4 0.29 TCGA-5P-A9K0-01 6 96652212 96652212 T G FUT9 3'UTR 0.37 TCGA-5P-A9K0-01 7 2617955 2617955 A T IQCE Missense_Mutation p.D182V 0.49 deleterious(0) probably_damaging(0.999) TCGA-5P-A9K0-01 7 75045047 75045047 G T POM121C 3'Flank 0.29 TCGA-5P-A9K0-01 7 99017004 99017004 T C PTCD1 3'Flank 0.56 TCGA-5P-A9K0-01 8 126034264 126034264 T A SQLE 3'UTR 0.53 TCGA-5P-A9K0-01 8 143956705 143956705 A G CYP11B1 Missense_Mutation p.L382P 0.42 deleterious(0) benign(0.169) TCGA-5P-A9K0-01 8 95539042 95539042 A C KIAA1429 Missense_Mutation p.L477R 0.34 deleterious(0) probably_damaging(0.999) TCGA-5P-A9K0-01 8 97243192 97243192 A T UQCRB 3'UTR 0.36 TCGA-5P-A9K0-01 9 139566407 139566407 C A EGFL7 Missense_Mutation p.H222Q 0.20 tolerated(0.11) possibly_damaging(0.649) TCGA-5P-A9K0-01 9 15666301 15666301 G C CCDC171 Missense_Mutation p.E352D 0.42 tolerated(0.11) benign(0.056) TCGA-5P-A9K0-01 9 34616054 34616054 G T DCTN3 Missense_Mutation p.P109T 0.06 deleterious(0) probably_damaging(0.965) TCGA-5P-A9K0-01 9 80851208 80851208 C T CEP78 5'UTR 0.28 TCGA-5P-A9K0-01 X 119500447 119500447 G C ATP1B4 Missense_Mutation p.R44P 0.79 deleterious_low_confidence(0.02) benign(0.001) TCGA-5P-A9K0-01 X 153357719 153357719 C A MECP2 Intron 0.82 TCGA-5P-A9K0-01 X 154113386 154113386 C A H2AFB1 Missense_Mutation p.S21Y 0.82 deleterious(0) possibly_damaging(0.831) TCGA-5P-A9K0-01 X 44950075 44950075 A - KDM6A Frame_Shift_Del p.K1282Rfs*10 0.39 TCGA-5P-A9K0-01 X 49126754 49126754 T A PPP1R3F Missense_Mutation p.L141Q 0.69 deleterious(0) probably_damaging(0.998) TCGA-5P-A9K0-01 X 53619440 53619440 C T HUWE1 Missense_Mutation p.G1297E 0.93 benign(0.027) TCGA-5P-A9K0-01 X 70679095 70679095 A G TAF1 Intron 0.73 TCGA-5P-A9K2-01 10 106034479 106034479 T - GSTO2 5'UTR 0.29 TCGA-5P-A9K2-01 10 70404540 70404540 T A TET1 Nonsense_Mutation p.L685* 0.40 TCGA-5P-A9K2-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.22 TCGA-5P-A9K2-01 11 102221170 102221170 A G BIRC2 Silent p.P195P 0.35 TCGA-5P-A9K2-01 11 10789494 10789494 G A CTR9 Missense_Mutation p.V610M 0.31 deleterious(0) benign(0.017) TCGA-5P-A9K2-01 11 118965647 118965647 G T H2AFX 3'UTR 0.42 TCGA-5P-A9K2-01 11 43284016 43284016 G A HNRNPKP3 RNA 0.29 TCGA-5P-A9K2-01 11 43284017 43284017 A T HNRNPKP3 RNA 0.23 TCGA-5P-A9K2-01 11 47260547 47260547 G A DDB2 3'UTR 0.30 TCGA-5P-A9K2-01 11 65349066 65349066 A G EHBP1L1 Missense_Mutation p.K308R 0.44 tolerated(0.07) probably_damaging(0.987) TCGA-5P-A9K2-01 11 65729217 65729233 TCGGCGGCAGCCGGGCT - SART1 5'UTR 0.20 TCGA-5P-A9K2-01 11 89392720 89392720 G A FOLH1B RNA 0.27 TCGA-5P-A9K2-01 11 9165682 9165682 A - DENND5A Frame_Shift_Del p.I1089Tfs*15 0.27 TCGA-5P-A9K2-01 12 1017121 1017121 A C WNK1 Missense_Mutation p.H2251P 0.33 deleterious(0) probably_damaging(0.997) TCGA-5P-A9K2-01 12 104719206 104719206 C T TXNRD1 Missense_Mutation p.T436M 0.04 deleterious(0) probably_damaging(1) TCGA-5P-A9K2-01 12 133331516 133331516 C T ANKLE2 Missense_Mutation p.A129T 0.36 tolerated(0.14) benign(0.008) TCGA-5P-A9K2-01 12 51844689 51844689 A G SLC4A8 Missense_Mutation p.M54V 0.42 tolerated(1) benign(0.05) TCGA-5P-A9K2-01 12 6887602 6887602 A - LAG3 3'UTR 0.35 TCGA-5P-A9K2-01 13 27669947 27669947 G T USP12 Missense_Mutation p.Q122K 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-5P-A9K2-01 14 100996202 100996202 T A WDR25 Missense_Mutation p.L487M 0.36 tolerated(0.12) probably_damaging(0.999) TCGA-5P-A9K2-01 14 24563739 24563739 G C PCK2 Intron 0.35 TCGA-5P-A9K2-01 14 86088353 86088353 T C FLRT2 Silent p.F165F 0.31 TCGA-5P-A9K2-01 14 86091891 86091891 T - FLRT2 3'UTR 0.27 TCGA-5P-A9K2-01 15 22991163 22991163 C T CYFIP1 Missense_Mutation p.T951M 0.50 deleterious(0.04) possibly_damaging(0.871) TCGA-5P-A9K2-01 16 14704668 14704668 T G PARN Splice_Site p.X130_splice 0.31 TCGA-5P-A9K2-01 16 67405136 67405137 AG - LRRC36 Frame_Shift_Del p.G496Qfs*6 0.22 TCGA-5P-A9K2-01 16 71607494 71607494 C T TAT Missense_Mutation p.R119Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-5P-A9K2-01 16 87445572 87445572 G A ZCCHC14 Missense_Mutation p.P782S 0.62 tolerated(0.06) unknown(0) TCGA-5P-A9K2-01 17 16667486 16667486 G A CCDC144A Silent p.L1365L 0.23 TCGA-5P-A9K2-01 17 16667487 16667487 A G CCDC144A Missense_Mutation p.K1366E 0.23 tolerated_low_confidence(0.05) possibly_damaging(0.636) TCGA-5P-A9K2-01 17 30696690 30696690 C T ZNF207 Missense_Mutation p.P466L 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-5P-A9K2-01 17 4841167 4841167 A T SLC25A11 Missense_Mutation p.Y272N 0.24 tolerated(1) benign(0) TCGA-5P-A9K2-01 17 48557272 48557272 C A RSAD1 Missense_Mutation p.P101T 0.56 deleterious(0) probably_damaging(1) TCGA-5P-A9K2-01 18 72776216 72776216 A G ZNF407 Missense_Mutation p.Q2180R 0.44 deleterious(0) benign(0.023) TCGA-5P-A9K2-01 18 72776240 72776240 A G ZNF407 Missense_Mutation p.H2188R 0.38 deleterious(0) probably_damaging(0.987) TCGA-5P-A9K2-01 18 9888142 9888142 T C TXNDC2 3'UTR 0.08 TCGA-5P-A9K2-01 19 12575957 12575957 G C ZNF709 Missense_Mutation p.A260G 0.36 tolerated(0.06) benign(0.266) TCGA-5P-A9K2-01 19 42754700 42754700 A G ERF Missense_Mutation p.W14R 0.38 deleterious(0) probably_damaging(0.999) TCGA-5P-A9K2-01 19 44466901 44466901 T G ZNF221 Missense_Mutation p.L8R 0.31 tolerated_low_confidence(0.1) possibly_damaging(0.902) TCGA-5P-A9K2-01 19 48248919 48248919 A C GLTSCR2 Silent p.R35R 0.40 TCGA-5P-A9K2-01 19 54652449 54652449 C G CNOT3 Silent p.S459S 0.39 TCGA-5P-A9K2-01 19 54930303 54930303 C A TTYH1 Missense_Mutation p.A43D 0.35 deleterious(0) probably_damaging(0.999) TCGA-5P-A9K2-01 19 5587272 5587272 G T SAFB2 Missense_Mutation p.H948Q 0.40 deleterious(0.02) benign(0.227) TCGA-5P-A9K2-01 19 994054 994056 GCT - WDR18 In_Frame_Del p.L379del 0.45 TCGA-5P-A9K2-01 1 109779490 109779503 AAGGTCTGGGTTGT - SARS Intron 0.27 TCGA-5P-A9K2-01 1 109805879 109805879 C T CELSR2 Silent p.S1608S 0.06 TCGA-5P-A9K2-01 1 112281924 112281924 T A FAM212B 5'UTR 0.35 TCGA-5P-A9K2-01 1 1268443 1268443 G - TAS1R3 Frame_Shift_Del p.R473Sfs*11 0.26 TCGA-5P-A9K2-01 1 155451901 155451901 T C ASH1L Missense_Mutation p.I254V 0.36 tolerated_low_confidence(0.68) benign(0.101) TCGA-5P-A9K2-01 1 17084086 17084086 A T MST1L RNA 0.08 TCGA-5P-A9K2-01 1 220267813 220267813 G T IARS2 Silent p.L85L 0.35 TCGA-5P-A9K2-01 1 2491291 2491291 T C TNFRSF14 Missense_Mutation p.S112P 0.44 deleterious(0) probably_damaging(0.997) TCGA-5P-A9K2-01 1 32198684 32198684 G A BAI2 Silent p.A1171A 0.08 TCGA-5P-A9K2-01 1 36751972 36751972 T G THRAP3 Silent p.S47S 0.41 TCGA-5P-A9K2-01 1 38288019 38288019 G A MTF1 Missense_Mutation p.S514L 0.48 tolerated(0.07) benign(0.016) TCGA-5P-A9K2-01 20 23345062 23345062 A C GZF1 Silent p.P14P 0.74 TCGA-5P-A9K2-01 20 25011596 25011596 T C ACSS1 Splice_Site p.X144_splice 0.31 TCGA-5P-A9K2-01 20 62200744 62200744 T - HELZ2 Frame_Shift_Del p.N282Ifs*33 0.32 TCGA-5P-A9K2-01 20 62365029 62365029 G A ZGPAT Missense_Mutation p.R270H 0.66 deleterious(0.01) possibly_damaging(0.812) TCGA-5P-A9K2-01 20 62494129 62494129 G - ABHD16B Frame_Shift_Del p.E413Rfs*18 0.29 TCGA-5P-A9K2-01 21 46603314 46603314 T G ADARB1 Missense_Mutation p.S429A 0.42 tolerated(0.8) benign(0.135) TCGA-5P-A9K2-01 2 160289719 160289719 G C BAZ2B Missense_Mutation p.F483L 0.47 benign(0.153) TCGA-5P-A9K2-01 2 160634461 160634461 T C LY75-CD302 Missense_Mutation p.K1803E 0.41 tolerated(0.28) benign(0.085) TCGA-5P-A9K2-01 2 169787177 169787177 C - ABCB11 Frame_Shift_Del p.V1137* 0.21 TCGA-5P-A9K2-01 2 187466865 187466865 A C ITGAV Missense_Mutation p.E101D 0.30 tolerated(0.39) benign(0.053) TCGA-5P-A9K2-01 2 198270054 198270054 G T SF3B1 Missense_Mutation p.S461Y 0.44 deleterious(0.04) benign(0.19) TCGA-5P-A9K2-01 2 211455529 211455529 G T CPS1 Missense_Mutation p.L288F 0.09 deleterious(0.03) benign(0.021) TCGA-5P-A9K2-01 2 228356286 228356286 G T AGFG1 Missense_Mutation p.R64M 0.42 deleterious(0) probably_damaging(0.975) TCGA-5P-A9K2-01 2 27463149 27463149 G T CAD Missense_Mutation p.R1838L 0.38 tolerated(0.12) benign(0.268) TCGA-5P-A9K2-01 2 50434820 50434820 G A NRXN1 Intron 0.07 TCGA-5P-A9K2-01 3 128720759 128720759 C A EFCC1 Silent p.A96A 0.28 TCGA-5P-A9K2-01 3 195511828 195511828 G C MUC4 Missense_Mutation p.P2208R 0.06 unknown(0) TCGA-5P-A9K2-01 3 48727116 48727116 C T IP6K2 Missense_Mutation p.R212H 0.26 tolerated(0.59) possibly_damaging(0.899) TCGA-5P-A9K2-01 3 52156422 52156422 G T POC1A Silent p.A318A 0.06 TCGA-5P-A9K2-01 4 121828665 121828665 G A PRDM5 Silent p.D47D 0.46 TCGA-5P-A9K2-01 4 122722895 122722901 AGTGCTT - EXOSC9 Intron 0.33 TCGA-5P-A9K2-01 4 122825529 122825529 A T TRPC3 Missense_Mutation p.V734D 0.29 deleterious(0) probably_damaging(0.998) TCGA-5P-A9K2-01 4 122825544 122825544 A T TRPC3 Missense_Mutation p.V729E 0.31 deleterious(0) probably_damaging(0.985) TCGA-5P-A9K2-01 4 159092466 159092466 G A FAM198B Missense_Mutation p.P21L 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.859) TCGA-5P-A9K2-01 4 184366090 184366090 C - CDKN2AIP Frame_Shift_Del p.A49Lfs*61 0.28 TCGA-5P-A9K2-01 4 2835654 2835654 A G SH3BP2 3'UTR 0.35 TCGA-5P-A9K2-01 4 42119418 42119418 G T BEND4 3'UTR 0.36 TCGA-5P-A9K2-01 4 48581047 48581047 T C FRYL Missense_Mutation p.Y824C 0.41 deleterious(0.01) probably_damaging(0.985) TCGA-5P-A9K2-01 4 54248495 54248495 C G FIP1L1 Missense_Mutation p.P74R 0.34 tolerated_low_confidence(0.09) benign(0.077) TCGA-5P-A9K2-01 5 102364826 102364826 C T PAM 3'Flank 0.41 TCGA-5P-A9K2-01 5 125808993 125808993 A G GRAMD3 Missense_Mutation p.Q155R 0.42 deleterious(0) probably_damaging(1) TCGA-5P-A9K2-01 5 94783981 94783981 T C FAM81B Silent p.S346S 0.43 TCGA-5P-A9K2-01 6 127775183 127775183 A G SOGA3 3'UTR 0.56 TCGA-5P-A9K2-01 6 152470766 152470766 A C SYNE1 Missense_Mutation p.I8163S 0.40 benign(0.349) TCGA-5P-A9K2-01 6 18149368 18149368 G T TPMT 5'UTR 0.35 TCGA-5P-A9K2-01 6 27420389 27420389 G T ZNF184 Missense_Mutation p.Q317K 0.33 tolerated(0.11) possibly_damaging(0.818) TCGA-5P-A9K2-01 6 31239839 31239839 T C HLA-C Missense_Mutation p.M4V 0.37 tolerated_low_confidence(0.12) benign(0.011) TCGA-5P-A9K2-01 6 43039962 43039962 T A KLC4 Missense_Mutation p.L504Q 0.40 deleterious(0) probably_damaging(0.994) TCGA-5P-A9K2-01 6 7249194 7249198 TGGAG - RREB1 Frame_Shift_Del p.E1742T 0.36 TCGA-5P-A9K2-01 6 72892828 72892828 G C RIMS1 Missense_Mutation p.E552Q 0.33 deleterious(0) possibly_damaging(0.772) TCGA-5P-A9K2-01 6 99283832 99283832 C A POU3F2 Silent p.I361I 0.31 TCGA-5P-A9K2-01 7 138738235 138738235 C G ZC3HAV1 Missense_Mutation p.S804T 0.47 deleterious(0.02) benign(0.004) TCGA-5P-A9K2-01 7 139316430 139316430 A G HIPK2 Missense_Mutation p.I382T 0.59 deleterious(0) probably_damaging(0.99) TCGA-5P-A9K2-01 7 33138929 33138929 T A RP9 Missense_Mutation p.K101N 0.48 deleterious(0.02) possibly_damaging(0.484) TCGA-5P-A9K2-01 7 50544331 50544331 A G DDC Silent p.T344T 0.50 TCGA-5P-A9K2-01 7 825379 825379 C - HEATR2 3'UTR 0.32 TCGA-5P-A9K2-01 7 99092213 99092213 G A ZNF394 Nonsense_Mutation p.Q209* 0.59 TCGA-5P-A9K2-01 9 116276826 116276826 C A RGS3 Missense_Mutation p.H522Q 0.38 deleterious(0.01) benign(0.186) TCGA-5P-A9K2-01 9 118969802 118969802 T A PAPPA Missense_Mutation p.F516I 0.48 deleterious(0) possibly_damaging(0.637) TCGA-5P-A9K2-01 9 138516059 138516059 T C GLT6D1 Missense_Mutation p.I239V 0.38 tolerated(1) benign(0.011) TCGA-5P-A9K2-01 9 96214579 96214579 A C FAM120A Missense_Mutation p.N128H 0.36 deleterious(0.04) possibly_damaging(0.885) TCGA-5P-A9K3-01 10 104678741 104678741 C T CNNM2 Silent p.R168R 0.36 TCGA-5P-A9K3-01 10 119044221 119044221 C T PDZD8 Missense_Mutation p.D675N 0.34 tolerated(0.08) benign(0.435) TCGA-5P-A9K3-01 10 94250353 94250353 C T IDE Splice_Site p.X477_splice 0.40 TCGA-5P-A9K3-01 11 62648449 62648449 C A SLC3A2 Intron 0.42 TCGA-5P-A9K3-01 11 64419057 64419057 C T NRXN2 Missense_Mutation p.G863D 0.10 deleterious(0) probably_damaging(0.978) TCGA-5P-A9K3-01 11 65744127 65744127 G C SART1 Missense_Mutation p.D583H 0.34 deleterious(0) probably_damaging(0.998) TCGA-5P-A9K3-01 11 66627359 66627359 C G LRFN4 Missense_Mutation p.T534S 0.38 tolerated(0.05) possibly_damaging(0.771) TCGA-5P-A9K3-01 11 76372150 76372150 G A LRRC32 Missense_Mutation p.R163C 0.17 deleterious(0.02) probably_damaging(0.932) TCGA-5P-A9K3-01 11 76872079 76872079 C T MYO7A Missense_Mutation p.P421S 0.40 deleterious(0.01) possibly_damaging(0.731) TCGA-5P-A9K3-01 12 10251426 10251426 A C CLEC1A Missense_Mutation p.H32Q 0.24 tolerated(0.53) benign(0) TCGA-5P-A9K3-01 12 40422123 40422134 TCCTCTTCAATG - SLC2A13 In_Frame_Del p.N298_E302delinsK 0.28 TCGA-5P-A9K3-01 12 43896178 43896178 A C ADAMTS20 Missense_Mutation p.F215C 0.29 tolerated(0.19) possibly_damaging(0.879) TCGA-5P-A9K3-01 12 49317595 49317596 CA - FKBP11 Nonsense_Mutation p.Y119* 0.25 TCGA-5P-A9K3-01 12 50514226 50514226 T C COX14 3'UTR 0.42 TCGA-5P-A9K3-01 12 72666799 72666799 T C TRHDE Missense_Mutation p.S81P 0.06 tolerated_low_confidence(0.34) benign(0) TCGA-5P-A9K3-01 12 80182551 80182551 A G PPP1R12A Silent p.S893S 0.38 TCGA-5P-A9K3-01 13 77742691 77742691 T C MYCBP2 Missense_Mutation p.N1958D 0.39 possibly_damaging(0.892) TCGA-5P-A9K3-01 14 105395668 105395668 C T PLD4 Nonsense_Mutation p.Q165* 0.39 TCGA-5P-A9K3-01 14 25075755 25075755 G T GZMH 3'UTR 0.42 TCGA-5P-A9K3-01 14 38680475 38680475 C T SSTR1 3'UTR 0.32 TCGA-5P-A9K3-01 14 51208398 51208398 G T NIN Silent p.R1784R 0.36 TCGA-5P-A9K3-01 14 67769140 67769140 G T MPP5 Missense_Mutation p.R272L 0.26 deleterious(0.03) probably_damaging(0.956) TCGA-5P-A9K3-01 14 89016788 89016795 GCAAAGAG - PTPN21 5'UTR 0.15 TCGA-5P-A9K3-01 15 50904942 50904942 G A TRPM7 Missense_Mutation p.P619S 0.37 tolerated(0.46) benign(0.007) TCGA-5P-A9K3-01 15 72037466 72037466 G A THSD4 Missense_Mutation p.R643H 0.28 tolerated(0.38) benign(0.005) TCGA-5P-A9K3-01 16 27751558 27751558 C T KIAA0556 Missense_Mutation p.A647V 0.05 tolerated(0.06) benign(0.197) TCGA-5P-A9K3-01 16 30960513 30960513 C A ORAI3 5'UTR 0.46 TCGA-5P-A9K3-01 16 67645250 67645250 A G CTCF Missense_Mutation p.N172S 0.39 tolerated(0.15) possibly_damaging(0.672) TCGA-5P-A9K3-01 16 89940088 89940089 - C TCF25 Frame_Shift_Ins p.L6Pfs*25 0.27 TCGA-5P-A9K3-01 17 37099134 37099134 A T FBXO47 Missense_Mutation p.L327H 0.20 deleterious(0) probably_damaging(0.997) TCGA-5P-A9K3-01 17 7579355 7579355 A G TP53 Missense_Mutation p.L111P 0.59 deleterious(0) probably_damaging(0.999) TCGA-5P-A9K3-01 17 80656364 80656364 C G RAB40B Missense_Mutation p.G37R 0.23 deleterious(0) probably_damaging(0.969) TCGA-5P-A9K3-01 18 21530086 21530086 C T LAMA3 Missense_Mutation p.P3202L 0.57 benign(0.405) TCGA-5P-A9K3-01 19 13050917 13050917 T C CALR Missense_Mutation p.Y150H 0.06 tolerated(0.07) possibly_damaging(0.57) TCGA-5P-A9K3-01 19 13065098 13065098 T G GADD45GIP1 Missense_Mutation p.K198T 0.08 deleterious(0.01) probably_damaging(0.913) TCGA-5P-A9K3-01 19 15586537 15586537 C A PGLYRP2 Missense_Mutation p.R315L 0.48 deleterious(0.02) possibly_damaging(0.877) TCGA-5P-A9K3-01 19 40900916 40900916 C A PRX Missense_Mutation p.A1115S 0.28 tolerated(0.52) possibly_damaging(0.567) TCGA-5P-A9K3-01 19 53793709 53793709 G C BIRC8 5'UTR 0.33 TCGA-5P-A9K3-01 19 55450484 55450484 A T NLRP7 Missense_Mutation p.L568Q 0.17 deleterious(0.01) probably_damaging(0.923) TCGA-5P-A9K3-01 19 56935542 56935542 A T ZNF583 Silent p.G505G 0.43 TCGA-5P-A9K3-01 1 186072734 186072734 C G HMCN1 Silent p.P3568P 0.49 TCGA-5P-A9K3-01 1 196448320 196448320 G C KCNT2 Missense_Mutation p.L125V 0.35 tolerated(0.05) probably_damaging(0.965) TCGA-5P-A9K3-01 1 203276494 203276495 - A BTG2 Frame_Shift_Ins p.T136Nfs*40 0.16 TCGA-5P-A9K3-01 1 220232335 220232335 C G BPNT1 Splice_Site p.X260_splice 0.21 TCGA-5P-A9K3-01 1 89587538 89587538 C G GBP2 Missense_Mutation p.V38L 0.76 tolerated(0.15) benign(0.375) TCGA-5P-A9K3-01 20 13763687 13763687 T A ESF1 Missense_Mutation p.I34F 0.37 deleterious(0) probably_damaging(0.991) TCGA-5P-A9K3-01 20 1961100 1961100 G A PDYN Missense_Mutation p.R212W 0.09 deleterious(0) probably_damaging(1) TCGA-5P-A9K3-01 20 3652297 3652297 G C ADAM33 Silent p.L612L 0.40 TCGA-5P-A9K3-01 20 57599619 57599619 T C TUBB1 Silent p.N379N 0.36 TCGA-5P-A9K3-01 21 33956569 33956569 G A TCP10L Missense_Mutation p.H16Y 0.28 deleterious(0.01) possibly_damaging(0.86) TCGA-5P-A9K3-01 21 47546102 47546102 C T COL6A2 Silent p.D791D 0.29 TCGA-5P-A9K3-01 22 21370247 21370247 A C P2RX6 Missense_Mutation p.K61Q 0.44 deleterious(0.02) benign(0.34) TCGA-5P-A9K3-01 22 41527606 41527606 T C EP300 Silent p.S499S 0.17 TCGA-5P-A9K3-01 22 50555698 50555698 G T MOV10L1 Nonsense_Mutation p.E458* 0.32 TCGA-5P-A9K3-01 2 179584977 179584977 C T TTN Missense_Mutation p.V7798M 0.15 TCGA-5P-A9K3-01 2 219250142 219250142 C T SLC11A1 Intron 0.33 TCGA-5P-A9K3-01 3 130290142 130290142 G A COL6A6 Missense_Mutation p.G961E 0.34 tolerated(0.11) probably_damaging(1) TCGA-5P-A9K3-01 3 173997169 173997169 T - NLGN1 Frame_Shift_Del p.F460Lfs*11 0.19 TCGA-5P-A9K3-01 3 178916725 178916725 C T PIK3CA Missense_Mutation p.R38C 0.52 deleterious(0) probably_damaging(1) TCGA-5P-A9K3-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.48 deleterious(0.04) probably_damaging(0.96) TCGA-5P-A9K3-01 3 47079260 47079260 G A SETD2 Nonsense_Mutation p.Q2416* 0.57 TCGA-5P-A9K3-01 3 52613184 52613184 T - PBRM1 Frame_Shift_Del p.N1115Mfs*19 0.40 TCGA-5P-A9K3-01 4 110624544 110624544 G C CASP6 Missense_Mutation p.S3W 0.60 deleterious_low_confidence(0) benign(0.189) TCGA-5P-A9K3-01 4 138442122 138442122 G T PCDH18 3'UTR 0.25 TCGA-5P-A9K3-01 4 2930015 2930015 A G ADD1 Missense_Mutation p.K691R 0.46 tolerated_low_confidence(0.3) benign(0.165) TCGA-5P-A9K3-01 4 6055528 6055528 C A JAKMIP1 Intron 0.50 TCGA-5P-A9K3-01 4 88929118 88929118 C T PKD2 Missense_Mutation p.P78L 0.57 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-5P-A9K3-01 5 102423700 102423700 T C GIN1 Missense_Mutation p.T491A 0.38 tolerated_low_confidence(0.93) benign(0) TCGA-5P-A9K3-01 5 14751188 14751188 G A ANKH Missense_Mutation p.P226L 0.39 tolerated(0.34) benign(0.008) TCGA-5P-A9K3-01 5 41071175 41071175 C A MROH2B 5'UTR 0.42 TCGA-5P-A9K3-01 6 160211710 160211710 T G MRPL18 Intron 0.26 TCGA-5P-A9K3-01 6 32064651 32064651 C T TNXB Missense_Mutation p.V327M 0.42 probably_damaging(0.987) TCGA-5P-A9K3-01 6 35047434 35047434 G A ANKS1A Missense_Mutation p.E809K 0.43 deleterious(0) probably_damaging(0.976) TCGA-5P-A9K3-01 6 38919137 38919137 A T DNAH8 Missense_Mutation p.I3881F 0.42 probably_damaging(0.965) TCGA-5P-A9K3-01 6 51524419 51524419 T A PKHD1 Missense_Mutation p.E3502V 0.42 deleterious(0) probably_damaging(0.974) TCGA-5P-A9K3-01 7 102743820 102743820 T G NAPEPLD 3'UTR 0.15 TCGA-5P-A9K3-01 7 64863907 64863907 T A ZNF92 Missense_Mutation p.F294I 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-5P-A9K3-01 7 91755569 91755569 G T CYP51A1 Missense_Mutation p.F256L 0.30 deleterious(0.01) possibly_damaging(0.88) TCGA-5P-A9K3-01 7 99516791 99516791 G A TRIM4 Silent p.R78R 0.42 TCGA-5P-A9K3-01 8 101300044 101300044 G C RNF19A Missense_Mutation p.T120S 0.35 tolerated(0.48) benign(0.002) TCGA-5P-A9K3-01 8 145727219 145727220 - GC PPP1R16A Frame_Shift_Ins p.L508Rfs*88 0.24 TCGA-5P-A9K3-01 8 146157588 146157588 G A ZNF16 Silent p.D195D 0.43 TCGA-5P-A9K3-01 9 139741257 139741257 C T C9orf172 Silent p.R797R 0.35 TCGA-5P-A9K3-01 9 91961869 91961869 C - SECISBP2 Frame_Shift_Del p.P504Rfs*11 0.23 TCGA-5P-A9K3-01 X 128582334 128582334 C G SMARCA1 Missense_Mutation p.K1039N 0.71 tolerated(0.06) benign(0.403) TCGA-5P-A9K3-01 X 13732344 13732344 C G TRAPPC2 3'Flank 0.24 TCGA-5P-A9K3-01 X 148607520 148607520 C T IDS Intron 0.78 TCGA-5P-A9K3-01 X 14862799 14862799 G A FANCB Missense_Mutation p.S664L 0.76 deleterious(0) probably_damaging(0.999) TCGA-5P-A9K3-01 X 48979991 48979991 C A GPKOW Missense_Mutation p.A28S 0.78 tolerated(0.63) benign(0.011) TCGA-5P-A9K6-01 10 121586617 121586617 T C INPP5F Silent p.L908L 0.26 TCGA-5P-A9K6-01 10 74920305 74920311 ACCTCCT CG ECD Splice_Site p.X69_splice 0.22 TCGA-5P-A9K6-01 11 11373596 11373596 T C CSNK2A3 Silent p.S357S 0.20 TCGA-5P-A9K6-01 11 116655623 116655623 G A ZNF259 Silent p.S256S 0.40 TCGA-5P-A9K6-01 11 18051107 18051107 T C TPH1 Missense_Mutation p.Y141C 0.20 deleterious(0) probably_damaging(1) TCGA-5P-A9K6-01 11 977190 977190 C T AP2A2 Missense_Mutation p.S190F 0.26 deleterious(0.03) benign(0.037) TCGA-5P-A9K6-01 12 22606969 22606969 C A C2CD5 Missense_Mutation p.G911V 0.26 deleterious(0) probably_damaging(0.996) TCGA-5P-A9K6-01 12 52776299 52776299 G A KRT84 Silent p.F278F 0.25 TCGA-5P-A9K6-01 12 668503 668503 A T B4GALNT3 Missense_Mutation p.K935M 0.26 deleterious(0) probably_damaging(1) TCGA-5P-A9K6-01 13 37271391 37271391 G A SERTM1 3'UTR 0.44 TCGA-5P-A9K6-01 13 61985258 61985258 T A PCDH20 3'UTR 0.47 TCGA-5P-A9K6-01 14 22133689 22133689 C T OR4E2 Silent p.H131H 0.31 TCGA-5P-A9K6-01 14 31085631 31085631 C T G2E3 Missense_Mutation p.A671V 0.30 tolerated(0.3) benign(0.009) TCGA-5P-A9K6-01 14 93761032 93761032 T G BTBD7 Missense_Mutation p.K112Q 0.27 deleterious(0.01) probably_damaging(0.975) TCGA-5P-A9K6-01 14 94845767 94845767 C A SERPINA1 Intron 0.30 TCGA-5P-A9K6-01 14 94845768 94845768 C T SERPINA1 Intron 0.30 TCGA-5P-A9K6-01 16 31488254 31488254 G T TGFB1I1 Missense_Mutation p.G348C 0.60 deleterious(0) probably_damaging(1) TCGA-5P-A9K6-01 16 70543137 70543137 C T COG4 Silent p.Q333Q 0.49 TCGA-5P-A9K6-01 17 2405596 2405596 T G METTL16 Missense_Mutation p.R10S 0.43 deleterious(0) probably_damaging(0.997) TCGA-5P-A9K6-01 17 36623021 36623021 G T ARHGAP23 Missense_Mutation p.G366V 0.49 deleterious(0.02) possibly_damaging(0.482) TCGA-5P-A9K6-01 17 39274461 39274461 C G KRTAP4-11 Missense_Mutation p.R36T 0.11 deleterious(0.04) unknown(0) TCGA-5P-A9K6-01 17 52990171 52990171 A G TOM1L1 Missense_Mutation p.I123V 0.11 deleterious(0.04) possibly_damaging(0.642) TCGA-5P-A9K6-01 17 56670954 56670954 C A TEX14 Missense_Mutation p.K852N 0.23 tolerated(0.14) benign(0.08) TCGA-5P-A9K6-01 17 7984019 7984019 A G ALOX12B Missense_Mutation p.S203P 0.24 deleterious(0.01) possibly_damaging(0.827) TCGA-5P-A9K6-01 17 8438748 8438748 C T MYH10 Silent p.L617L 0.54 TCGA-5P-A9K6-01 18 21106695 21106695 A C C18orf8 Missense_Mutation p.E385D 0.36 tolerated(1) benign(0) TCGA-5P-A9K6-01 18 2729383 2729383 G A SMCHD1 Silent p.T1008T 0.36 TCGA-5P-A9K6-01 19 47341743 47341743 C T AP2S1 Silent p.K130K 0.37 TCGA-5P-A9K6-01 19 58472818 58472818 C - C19orf18 Frame_Shift_Del p.G158Vfs*34 0.22 TCGA-5P-A9K6-01 19 9763811 9763811 A G ZNF562 Silent p.N365N 0.31 TCGA-5P-A9K6-01 1 120301769 120301769 A - HMGCS2 Frame_Shift_Del p.I277Sfs*22 0.20 TCGA-5P-A9K6-01 1 178863074 178863074 T A RALGPS2 Nonsense_Mutation p.L449* 0.32 TCGA-5P-A9K6-01 1 190067038 190067038 A C BRINP3 3'UTR 0.42 TCGA-5P-A9K6-01 1 226033088 226033088 T A EPHX1 3'UTR 0.50 TCGA-5P-A9K6-01 20 25004243 25004243 T C ACSS1 Silent p.G222G 0.38 TCGA-5P-A9K6-01 20 30602782 30602782 C T CCM2L Missense_Mutation p.R36C 0.38 deleterious(0) probably_damaging(0.999) TCGA-5P-A9K6-01 22 22160189 22160189 G A MAPK1 Missense_Mutation p.R148C 0.31 deleterious(0.01) probably_damaging(1) TCGA-5P-A9K6-01 22 32108919 32108919 T G PRR14L Silent p.R1636R 0.37 TCGA-5P-A9K6-01 2 116593770 116593770 C A DPP10 Nonsense_Mutation p.S667* 0.24 TCGA-5P-A9K6-01 2 128461243 128461243 G T WDR33 3'UTR 0.08 TCGA-5P-A9K6-01 2 169999196 169999197 - A LRP2 Frame_Shift_Ins p.E4366* 0.21 TCGA-5P-A9K6-01 2 202591545 202591545 C A ALS2 Missense_Mutation p.L1008F 0.30 deleterious(0) probably_damaging(0.999) TCGA-5P-A9K6-01 2 203165004 203165004 G C NOP58 Missense_Mutation p.C439S 0.32 tolerated(1) benign(0) TCGA-5P-A9K6-01 2 24362254 24362254 A G FAM228B Missense_Mutation p.I125M 0.26 tolerated(0.14) benign(0.21) TCGA-5P-A9K6-01 2 27360426 27360426 G A C2orf53 Missense_Mutation p.P258S 0.29 deleterious(0.01) possibly_damaging(0.656) TCGA-5P-A9K6-01 3 140409996 140409996 A C TRIM42 Missense_Mutation p.N683H 0.26 deleterious(0) probably_damaging(1) TCGA-5P-A9K6-01 3 184042785 184042785 G A EIF4G1 Silent p.E920E 0.35 TCGA-5P-A9K6-01 3 44369747 44369747 C G TOPAZ1 Missense_Mutation p.L1561V 0.43 deleterious(0.05) benign(0.163) TCGA-5P-A9K6-01 4 13543692 13543692 G A NKX3-2 Silent p.P309P 0.27 TCGA-5P-A9K6-01 4 140432721 140432721 C T SETD7 3'UTR 0.58 TCGA-5P-A9K6-01 4 71660584 71660584 G A RUFY3 Silent p.R510R 0.36 TCGA-5P-A9K6-01 4 83350614 83350614 C G HNRNPDL Missense_Mutation p.G77A 0.36 tolerated_low_confidence(0.17) possibly_damaging(0.794) TCGA-5P-A9K6-01 5 40681759 40681759 T C PTGER4 Missense_Mutation p.S222P 0.25 deleterious(0.04) possibly_damaging(0.771) TCGA-5P-A9K6-01 5 43613093 43613093 G A NNT Missense_Mutation p.V79I 0.42 deleterious(0.04) probably_damaging(0.993) TCGA-5P-A9K6-01 6 152589267 152589267 G T SYNE1 Missense_Mutation p.L6247I 0.34 benign(0.181) TCGA-5P-A9K6-01 6 158489737 158489737 C T SYNJ2 Silent p.S592S 0.08 TCGA-5P-A9K6-01 6 35745347 35745347 T C CLPSL2 Missense_Mutation p.C66R 0.27 deleterious(0) probably_damaging(0.919) TCGA-5P-A9K6-01 6 43268946 43268946 T C SLC22A7 Missense_Mutation p.C301R 0.42 deleterious(0) possibly_damaging(0.831) TCGA-5P-A9K6-01 7 108213747 108213747 C T DNAJB9 Nonsense_Mutation p.Q208* 0.49 TCGA-5P-A9K6-01 7 74564248 74564248 G T GTF2IRD2B Missense_Mutation p.L665F 0.31 deleterious(0.04) probably_damaging(0.994) TCGA-5P-A9K6-01 8 131955677 131955677 T A ADCY8 Missense_Mutation p.N425Y 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-5P-A9K6-01 8 67900447 67900447 C G PPP1R42 3'UTR 0.30 TCGA-5P-A9K6-01 8 8234618 8234618 G T SGK223 Missense_Mutation p.A434E 0.27 benign(0.143) TCGA-5P-A9K6-01 9 131477092 131477093 - AT PKN3 Frame_Shift_Ins p.M535Ifs*29 0.22 TCGA-5P-A9K6-01 9 20907233 20907233 A C FOCAD Missense_Mutation p.I904L 0.33 tolerated(0.12) benign(0.005) TCGA-5P-A9K6-01 X 135593689 135593689 T G HTATSF1 Missense_Mutation p.N595K 0.72 deleterious_low_confidence(0) benign(0.403) TCGA-5P-A9K6-01 X 19973668 19973668 A C CXorf23 Missense_Mutation p.S431A 0.65 tolerated(0.18) benign(0.049) TCGA-5P-A9K8-01 12 56182870 56182870 T C SARNP Missense_Mutation p.I164V 0.11 tolerated(0.73) benign(0.001) TCGA-5P-A9K8-01 12 78516053 78516053 G A NAV3 Silent p.P1361P 0.33 TCGA-5P-A9K8-01 14 29236691 29236691 C A FOXG1 Missense_Mutation p.P69Q 0.05 tolerated_low_confidence(0.1) unknown(0) TCGA-5P-A9K8-01 14 47530477 47530477 G A MDGA2 Silent p.I500I 0.63 TCGA-5P-A9K8-01 16 3119278 3119278 C A IL32 Missense_Mutation p.F163L 0.07 tolerated(0.59) benign(0.024) TCGA-5P-A9K8-01 16 74372379 74372379 G A RP11-252A24.2 RNA 0.19 TCGA-5P-A9K8-01 16 74976685 74976685 T C WDR59 Missense_Mutation p.N162S 0.07 tolerated(0.1) benign(0.009) TCGA-5P-A9K8-01 17 38640761 38640761 A C TNS4 Silent p.V492V 0.12 TCGA-5P-A9K8-01 17 47590457 47590457 T G NGFR 3'UTR 0.27 TCGA-5P-A9K8-01 17 80115637 80115637 G T CCDC57 Missense_Mutation p.A743D 0.08 deleterious(0) benign(0.004) TCGA-5P-A9K8-01 18 22805343 22805343 C T ZNF521 Missense_Mutation p.A847T 0.07 tolerated(0.34) benign(0.23) TCGA-5P-A9K8-01 1 145440061 145440064 AAAG - TXNIP Frame_Shift_Del p.K167Ffs*63 0.44 TCGA-5P-A9K8-01 1 172558934 172558934 G T SUCO Missense_Mutation p.G898V 0.12 deleterious(0.04) benign(0.078) TCGA-5P-A9K8-01 1 236959019 236959019 C T MTR Nonsense_Mutation p.Q6* 0.11 TCGA-5P-A9K8-01 1 248487386 248487386 G A OR2M7 Missense_Mutation p.A162V 0.05 tolerated(1) benign(0.004) TCGA-5P-A9K8-01 20 37163753 37163753 G A RALGAPB Missense_Mutation p.R761H 0.51 tolerated(0.06) probably_damaging(0.978) TCGA-5P-A9K8-01 21 33744844 33744844 A G URB1 Missense_Mutation p.Y325H 0.56 tolerated(0.31) possibly_damaging(0.649) TCGA-5P-A9K8-01 22 17072976 17072976 C T CCT8L2 Silent p.L155L 0.07 TCGA-5P-A9K8-01 22 50615492 50615492 G A PANX2 Silent p.S117S 0.44 TCGA-5P-A9K8-01 4 187006026 187006026 A G TLR3 Silent p.%3D 0.09 TCGA-5P-A9K8-01 5 13794140 13794140 G A DNAH5 Nonsense_Mutation p.R2639* 0.29 TCGA-5P-A9K8-01 5 173416244 173416244 G A C5orf47 5'UTR 0.50 TCGA-5P-A9K8-01 6 160239629 160239629 C T PNLDC1 Silent p.D389D 0.19 TCGA-5P-A9K8-01 6 26216532 26216532 C G HIST1H2BG Missense_Mutation p.E114Q 0.25 deleterious_low_confidence(0.02) benign(0.113) TCGA-5P-A9K8-01 6 49986773 49986773 G T DEFB110 Missense_Mutation p.Q41K 0.54 tolerated(0.27) benign(0.001) TCGA-5P-A9K8-01 7 299880 299880 G T FAM20C Missense_Mutation p.R563S 0.12 tolerated(0.06) benign(0.027) TCGA-5P-A9K8-01 8 108348443 108348443 G T ANGPT1 Silent p.T170T 0.10 TCGA-5P-A9K8-01 X 70099888 70099888 C T TEX11 Missense_Mutation p.D52N 0.11 tolerated(0.35) benign(0.037) TCGA-5P-A9KA-01 10 105990410 105990410 T C WDR96 Missense_Mutation p.K86R 0.35 tolerated(0.61) benign(0.012) TCGA-5P-A9KA-01 10 117228744 117228744 G T ATRNL1 Missense_Mutation p.D1187Y 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-5P-A9KA-01 10 88768386 88768386 G C RP11-96C23.10 3'Flank 0.35 TCGA-5P-A9KA-01 10 96612504 96612504 G A CYP2C19 Missense_Mutation p.V436M 0.08 tolerated(0.05) benign(0.224) TCGA-5P-A9KA-01 11 117064631 117064631 C T SIDT2 Silent p.V758V 0.27 TCGA-5P-A9KA-01 11 117335821 117335844 GTTGCTGCCGGGGCTGTTCTCTCT - DSCAML1 In_Frame_Del p.R1087_N1094del 0.29 TCGA-5P-A9KA-01 11 119206568 119206568 C A RNF26 Missense_Mutation p.H246N 0.18 tolerated(1) benign(0.002) TCGA-5P-A9KA-01 11 134253770 134253770 G C B3GAT1 Missense_Mutation p.T142R 0.14 deleterious(0) probably_damaging(1) TCGA-5P-A9KA-01 11 32955850 32955850 A G QSER1 Missense_Mutation p.K887E 0.30 deleterious(0) probably_damaging(0.997) TCGA-5P-A9KA-01 11 32955852 32955852 A T QSER1 Missense_Mutation p.K887N 0.30 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KA-01 11 68703885 68703885 T G IGHMBP2 Missense_Mutation p.I646S 0.31 deleterious(0) benign(0.103) TCGA-5P-A9KA-01 11 9595767 9595767 C A WEE1 Missense_Mutation p.P96H 0.27 tolerated_low_confidence(0.12) benign(0) TCGA-5P-A9KA-01 12 123034324 123034324 C A KNTC1 Silent p.L333L 0.44 TCGA-5P-A9KA-01 12 70974991 70974991 T G PTPRB Missense_Mutation p.E801D 0.47 tolerated(1) benign(0.003) TCGA-5P-A9KA-01 12 7351708 7351710 TGG - PEX5 Splice_Site p.X199_splice 0.22 TCGA-5P-A9KA-01 13 100623797 100623797 C G ZIC5 Missense_Mutation p.A45P 0.23 deleterious(0) unknown(0) TCGA-5P-A9KA-01 13 100623798 100623798 C T ZIC5 Silent p.T44T 0.22 TCGA-5P-A9KA-01 13 103289504 103289504 G A TPP2 Missense_Mutation p.S584N 0.31 tolerated(0.06) benign(0.063) TCGA-5P-A9KA-01 13 25670354 25670354 C A PABPC3 Silent p.P6P 0.16 TCGA-5P-A9KA-01 13 79945297 79945297 T G RBM26 Missense_Mutation p.R139S 0.20 tolerated(0.06) unknown(0) TCGA-5P-A9KA-01 14 39627583 39627583 A - TRAPPC6B Frame_Shift_Del p.F58Sfs*5 0.32 TCGA-5P-A9KA-01 14 64494496 64494496 T C SYNE2 Silent p.L2233L 0.35 TCGA-5P-A9KA-01 14 74042320 74042320 A G ACOT2 3'UTR 0.31 TCGA-5P-A9KA-01 14 91338269 91338269 A G RPS6KA5 3'UTR 0.22 TCGA-5P-A9KA-01 14 92627590 92627590 A T CPSF2 Missense_Mutation p.R752S 0.31 deleterious(0) probably_damaging(0.994) TCGA-5P-A9KA-01 15 63112730 63112731 - A TLN2 Frame_Shift_Ins p.E2309Rfs*14 0.19 TCGA-5P-A9KA-01 15 85382963 85382963 G C ALPK3 Missense_Mutation p.Q353H 0.16 deleterious(0) probably_damaging(1) TCGA-5P-A9KA-01 16 11856530 11856535 CGCTCC GA ZC3H7A Frame_Shift_Del p.G691Sfs*8 0.26 TCGA-5P-A9KA-01 16 2112991 2112991 C G TSC2 Silent p.A460A 0.22 TCGA-5P-A9KA-01 16 72991450 72991450 G A ZFHX3 Silent p.Y865Y 0.35 TCGA-5P-A9KA-01 16 74442816 74442816 T A CLEC18B 3'UTR 0.12 TCGA-5P-A9KA-01 16 90110481 90110481 A G GAS8 3'UTR 0.33 TCGA-5P-A9KA-01 17 10299694 10299694 C A MYH8 Missense_Mutation p.V1536L 0.29 tolerated(1) benign(0.003) TCGA-5P-A9KA-01 17 26906847 26906847 A C SPAG5 Missense_Mutation p.S936A 0.26 tolerated(0.64) benign(0.019) TCGA-5P-A9KA-01 17 45822709 45822709 T - TBX21 Frame_Shift_Del p.Y530Ifs*11 0.20 TCGA-5P-A9KA-01 17 8137889 8137889 C T CTC1 Missense_Mutation p.D568N 0.28 tolerated(0.28) benign(0.126) TCGA-5P-A9KA-01 17 9559778 9559778 A - USP43 Frame_Shift_Del p.E188Dfs*46 0.23 TCGA-5P-A9KA-01 18 21343469 21343469 G T LAMA3 Silent p.G388G 0.28 TCGA-5P-A9KA-01 18 43796193 43796193 A T C18orf25 Missense_Mutation p.E116V 0.30 probably_damaging(0.917) TCGA-5P-A9KA-01 18 52556748 52556748 G T RAB27B 3'UTR 0.31 TCGA-5P-A9KA-01 18 60646284 60646284 G T PHLPP1 Missense_Mutation p.D1592Y 0.26 deleterious(0) probably_damaging(0.931) TCGA-5P-A9KA-01 18 77513834 77513834 A G CTDP1 3'UTR 0.27 TCGA-5P-A9KA-01 19 14004035 14004035 A G C19orf57 Missense_Mutation p.S70P 0.33 tolerated(0.05) possibly_damaging(0.82) TCGA-5P-A9KA-01 19 14004037 14004037 C T C19orf57 Splice_Site p.X69_splice 0.34 TCGA-5P-A9KA-01 19 18545729 18545729 G T ISYNA1 Silent p.T557T 0.35 TCGA-5P-A9KA-01 19 30935607 30935607 C A ZNF536 Silent p.R380R 0.29 TCGA-5P-A9KA-01 19 39321795 39321795 T G ECH1 Missense_Mutation p.E91A 0.37 tolerated(0.16) benign(0.165) TCGA-5P-A9KA-01 19 40721175 40721175 G C MAP3K10 Silent p.L947L 0.32 TCGA-5P-A9KA-01 19 42219064 42219064 T A CEACAM5 Missense_Mutation p.L200H 0.25 deleterious(0) probably_damaging(1) TCGA-5P-A9KA-01 19 46324744 46324744 C T SYMPK Splice_Site p.X931_splice 0.32 TCGA-5P-A9KA-01 19 46888119 46888119 T A PPP5C Missense_Mutation p.L286H 0.20 deleterious(0) probably_damaging(0.997) TCGA-5P-A9KA-01 19 49621871 49621871 C T C19orf73 3'UTR 0.38 TCGA-5P-A9KA-01 19 52719038 52719038 A C PPP2R1A Missense_Mutation p.K272Q 0.35 tolerated(0.08) benign(0.001) TCGA-5P-A9KA-01 19 52719042 52719042 C T PPP2R1A Missense_Mutation p.A273V 0.34 tolerated(0.1) benign(0.036) TCGA-5P-A9KA-01 19 56028874 56028874 T A SSC5D Missense_Mutation p.S1077R 0.34 benign(0.005) TCGA-5P-A9KA-01 19 6854009 6854009 C T VAV1 Missense_Mutation p.A795V 0.34 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KA-01 1 13475225 13475225 A - PRAMEF18 Frame_Shift_Del p.Y302Mfs*4 0.23 TCGA-5P-A9KA-01 1 186880403 186880403 G A PLA2G4A Missense_Mutation p.S147N 0.21 deleterious(0.03) benign(0.078) TCGA-5P-A9KA-01 1 20879261 20879261 C T FAM43B 5'UTR 0.42 TCGA-5P-A9KA-01 1 212534084 212534084 G C PPP2R5A Missense_Mutation p.S478T 0.11 tolerated_low_confidence(0.58) benign(0.007) TCGA-5P-A9KA-01 1 235338621 235338621 C G ARID4B Missense_Mutation p.S1181T 0.24 tolerated(0.69) benign(0.001) TCGA-5P-A9KA-01 1 43896951 43896951 C A SZT2 Missense_Mutation p.S1587R 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-5P-A9KA-01 1 48694686 48694686 G A SLC5A9 Intron 0.33 TCGA-5P-A9KA-01 20 1293357 1293357 C A SDCBP2 Missense_Mutation p.G145V 0.40 deleterious(0) probably_damaging(0.979) TCGA-5P-A9KA-01 20 39990966 39990966 G T EMILIN3 Missense_Mutation p.P415T 0.36 tolerated(0.59) benign(0.001) TCGA-5P-A9KA-01 20 43752464 43752464 C G WFDC12 3'UTR 0.23 TCGA-5P-A9KA-01 21 44838412 44838412 A T SIK1 Missense_Mutation p.V491D 0.27 deleterious(0.02) possibly_damaging(0.657) TCGA-5P-A9KA-01 22 24810693 24810693 T G SPECC1L 3'UTR 0.44 TCGA-5P-A9KA-01 22 37407323 37407323 G T TST Missense_Mutation p.F213L 0.41 tolerated(0.06) probably_damaging(0.999) TCGA-5P-A9KA-01 2 207170563 207170563 T G ZDBF2 Missense_Mutation p.D437E 0.08 deleterious(0.02) benign(0.025) TCGA-5P-A9KA-01 2 210752974 210752974 G A UNC80 Silent p.E1424E 0.30 TCGA-5P-A9KA-01 2 220044862 220044862 C G FAM134A Missense_Mutation p.H150Q 0.33 tolerated(0.18) probably_damaging(0.997) TCGA-5P-A9KA-01 2 225370771 225370771 T A CUL3 Missense_Mutation p.I370F 0.32 tolerated(0.14) possibly_damaging(0.562) TCGA-5P-A9KA-01 2 230656640 230656640 C T TRIP12 Missense_Mutation p.D1378N 0.30 tolerated(0.2) probably_damaging(0.989) TCGA-5P-A9KA-01 2 230656641 230656641 T A TRIP12 Silent p.T1377T 0.29 TCGA-5P-A9KA-01 2 32461344 32461344 T C NLRC4 Silent p.K862K 0.07 TCGA-5P-A9KA-01 2 44512608 44512608 G C SLC3A1 Intron 0.25 TCGA-5P-A9KA-01 2 86333217 86333217 A G POLR1A 5'UTR 0.37 TCGA-5P-A9KA-01 2 86333224 86333224 G T POLR1A 5'UTR 0.36 TCGA-5P-A9KA-01 3 100354648 100354648 C G GPR128 Missense_Mutation p.T192S 0.39 tolerated(0.72) benign(0.003) TCGA-5P-A9KA-01 3 10140772 10140772 A C FANCD2 3'UTR 0.27 TCGA-5P-A9KA-01 3 108271221 108271221 C A KIAA1524 Splice_Site p.X803_splice 0.44 TCGA-5P-A9KA-01 3 118865256 118865256 G C C3orf30 Missense_Mutation p.G74R 0.43 tolerated(0.76) probably_damaging(0.998) TCGA-5P-A9KA-01 3 124527967 124527967 G T ITGB5 Missense_Mutation p.Q389K 0.21 tolerated(0.94) benign(0.158) TCGA-5P-A9KA-01 3 12856913 12856913 T A CAND2 Missense_Mutation p.L427H 0.33 deleterious(0.02) probably_damaging(0.954) TCGA-5P-A9KA-01 3 14239779 14239779 C T LSM3 3'UTR 0.36 TCGA-5P-A9KA-01 3 40352381 40352381 C G EIF1B Intron 0.29 TCGA-5P-A9KA-01 3 45943247 45943247 A C CCR9 Silent p.R323R 0.34 TCGA-5P-A9KA-01 3 4704871 4704871 A G ITPR1 Missense_Mutation p.E497G 0.09 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KA-01 3 50357467 50357467 G A HYAL2 Missense_Mutation p.R152C 0.31 deleterious(0) probably_damaging(1) TCGA-5P-A9KA-01 4 151935618 151935618 T C LRBA Silent p.E59E 0.26 TCGA-5P-A9KA-01 4 186379896 186379896 C G CCDC110 Missense_Mutation p.Q615H 0.22 deleterious(0) probably_damaging(0.952) TCGA-5P-A9KA-01 4 5838634 5838634 C A CRMP1 Splice_Site p.X437_splice 0.14 TCGA-5P-A9KA-01 5 140215838 140215838 G A PCDHA7 Missense_Mutation p.V624M 0.37 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-5P-A9KA-01 5 141331117 141331117 T A PCDH12 Missense_Mutation p.Q973H 0.19 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KA-01 5 176943178 176943178 G C DDX41 Silent p.A105A 0.28 TCGA-5P-A9KA-01 6 109319902 109319902 T G SESN1 Silent p.V262V 0.25 TCGA-5P-A9KA-01 6 112392751 112392751 T C TUBE1 Missense_Mutation p.Q431R 0.22 tolerated(0.29) benign(0.005) TCGA-5P-A9KA-01 6 116442551 116442551 A G COL10A1 Missense_Mutation p.M243T 0.06 tolerated(0.6) unknown(0) TCGA-5P-A9KA-01 6 116574508 116574508 C A TSPYL4 Missense_Mutation p.D222Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KA-01 6 132696131 132696131 A T MOXD1 Intron 0.30 TCGA-5P-A9KA-01 6 146262786 146262786 A T SHPRH Silent p.A821A 0.37 TCGA-5P-A9KA-01 6 152552580 152552580 T G SYNE1 Missense_Mutation p.Q6995H 0.28 benign(0.045) TCGA-5P-A9KA-01 6 24551749 24551749 T G KIAA0319 Missense_Mutation p.K985Q 0.36 deleterious(0.02) possibly_damaging(0.801) TCGA-5P-A9KA-01 6 3259208 3259208 G T PSMG4 5'UTR 0.38 TCGA-5P-A9KA-01 6 3259209 3259209 C G PSMG4 5'UTR 0.38 TCGA-5P-A9KA-01 6 99374476 99374476 G A FBXL4 Missense_Mutation p.T130I 0.33 tolerated(0.13) benign(0.295) TCGA-5P-A9KA-01 7 116423474 116423474 T C MET Missense_Mutation p.M1268T 0.33 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KA-01 7 117375153 117375153 T A CTTNBP2 Silent p.G1230G 0.32 TCGA-5P-A9KA-01 7 121616253 121616253 C T PTPRZ1 Silent p.D161D 0.36 TCGA-5P-A9KA-01 7 122839917 122839917 G C SLC13A1 Missense_Mutation p.I28M 0.32 deleterious(0) benign(0.222) TCGA-5P-A9KA-01 7 137801423 137801423 T C AKR1D1 3'UTR 0.29 TCGA-5P-A9KA-01 7 151877112 151877112 G T KMT2C Missense_Mutation p.P2417T 0.35 benign(0.002) TCGA-5P-A9KA-01 7 151919089 151919091 GCT - KMT2C In_Frame_Del p.E1165_L1166delinsV 0.31 TCGA-5P-A9KA-01 7 27872487 27872487 G - JAZF1 Frame_Shift_Del p.L222Cfs*55 0.20 TCGA-5P-A9KA-01 7 44080669 44080669 T A DBNL 5'Flank 0.38 TCGA-5P-A9KA-01 7 55560085 55560085 A G VOPP1 Missense_Mutation p.F73S 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-5P-A9KA-01 7 56006915 56006915 A C ZNF713 Missense_Mutation p.N170T 0.26 tolerated(0.08) benign(0.024) TCGA-5P-A9KA-01 7 97860661 97860661 C - TECPR1 Frame_Shift_Del p.V667Wfs*8 0.12 TCGA-5P-A9KA-01 8 125988832 125988832 C A ZNF572 Missense_Mutation p.H108N 0.28 tolerated(0.07) benign(0.022) TCGA-5P-A9KA-01 9 106901774 106901774 A C SMC2 3'UTR 0.28 TCGA-5P-A9KA-01 9 113637651 113637651 C A LPAR1 3'UTR 0.28 TCGA-5P-A9KA-01 9 132502088 132502090 GAA - PTGES In_Frame_Del p.F87del 0.30 TCGA-5P-A9KA-01 9 135863782 135863782 C T GFI1B Missense_Mutation p.T146I 0.33 tolerated(0.21) benign(0.025) TCGA-5P-A9KA-01 9 21008120 21008120 A G PTPLAD2 Silent p.P172P 0.32 TCGA-5P-A9KA-01 9 33467722 33467722 G A NOL6 Silent p.N523N 0.31 TCGA-5P-A9KA-01 9 37442100 37442100 C T ZBTB5 Missense_Mutation p.G150E 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-5P-A9KA-01 X 100276954 100276954 T C TRMT2B Intron 0.61 TCGA-5P-A9KC-01 10 101090293 101090293 G C CNNM1 Silent p.A383A 0.27 TCGA-5P-A9KC-01 10 3109839 3109839 G A PFKP Missense_Mutation p.E18K 0.24 tolerated(0.17) benign(0.006) TCGA-5P-A9KC-01 10 79741958 79741958 G C POLR3A Missense_Mutation p.T1238R 0.26 deleterious(0) probably_damaging(0.927) TCGA-5P-A9KC-01 10 93949 93949 T C TUBB8 Missense_Mutation p.D128G 0.04 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-5P-A9KC-01 11 124310809 124310809 G T OR8B8 Missense_Mutation p.P58H 0.36 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-5P-A9KC-01 11 35685224 35685224 T A TRIM44 Missense_Mutation p.Y189N 0.30 deleterious(0) unknown(0) TCGA-5P-A9KC-01 11 49598167 49598167 G A RP11-707M1.1 RNA 0.34 TCGA-5P-A9KC-01 11 62294536 62294536 G - AHNAK Frame_Shift_Del p.N2452Ifs*9 0.22 TCGA-5P-A9KC-01 11 67926523 67926523 A C SUV420H1 Silent p.T430T 0.22 TCGA-5P-A9KC-01 11 7846802 7846802 T C OR5P3 Missense_Mutation p.T240A 0.28 deleterious(0) probably_damaging(0.914) TCGA-5P-A9KC-01 11 89536962 89536962 C T TRIM49 Splice_Site p.X138_splice 0.22 TCGA-5P-A9KC-01 11 99941227 99941227 A T CNTN5 Nonsense_Mutation p.K412* 0.16 TCGA-5P-A9KC-01 12 108169302 108169302 C A ASCL4 Missense_Mutation p.L104M 0.46 tolerated(0.05) benign(0.442) TCGA-5P-A9KC-01 12 43769218 43769218 T C ADAMTS20 Missense_Mutation p.K1804E 0.25 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KC-01 12 49392077 49392077 T A DDN Silent p.G194G 0.22 TCGA-5P-A9KC-01 12 56115958 56115958 G T RP11-644F5.10 3'UTR 0.31 TCGA-5P-A9KC-01 12 56481697 56481697 T C ERBB3 Silent p.F244F 0.49 TCGA-5P-A9KC-01 12 57662177 57662177 G A R3HDM2 Missense_Mutation p.P633S 0.24 deleterious(0.03) benign(0.126) TCGA-5P-A9KC-01 13 25009275 25009275 C T PARP4 Missense_Mutation p.S1335N 0.32 tolerated(0.52) benign(0.024) TCGA-5P-A9KC-01 13 95230409 95230409 T C TGDS Silent p.S225S 0.26 TCGA-5P-A9KC-01 14 62547937 62547937 A G SYT16 Missense_Mutation p.H460R 0.27 tolerated(0.18) benign(0.001) TCGA-5P-A9KC-01 14 77845295 77845295 G T SAMD15 Nonsense_Mutation p.E512* 0.29 TCGA-5P-A9KC-01 14 91161915 91161915 T C TTC7B Missense_Mutation p.T236A 0.28 tolerated(0.53) probably_damaging(0.993) TCGA-5P-A9KC-01 15 24924481 24924481 C G NPAP1 Missense_Mutation p.P1156R 0.21 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-5P-A9KC-01 15 75165566 75165566 C T SCAMP2 Missense_Mutation p.D11N 0.18 deleterious(0.02) benign(0.103) TCGA-5P-A9KC-01 15 76646306 76646306 A T SCAPER Missense_Mutation p.L1344Q 0.22 deleterious(0) probably_damaging(1) TCGA-5P-A9KC-01 16 20809656 20809656 G C ERI2 Missense_Mutation p.A489G 0.19 tolerated(0.09) benign(0.007) TCGA-5P-A9KC-01 16 30366037 30366037 A G CD2BP2 Intron 0.30 TCGA-5P-A9KC-01 17 33768163 33768163 A G SLFN13 Silent p.L715L 0.04 TCGA-5P-A9KC-01 17 40062802 40062802 C A ACLY Missense_Mutation p.G282V 0.25 deleterious(0) probably_damaging(1) TCGA-5P-A9KC-01 17 41246841 41246841 G C BRCA1 Missense_Mutation p.T236S 0.29 tolerated(0.41) benign(0.122) TCGA-5P-A9KC-01 17 45380155 45380156 - A ITGB3 Nonsense_Mutation p.Y695* 0.25 TCGA-5P-A9KC-01 17 4850000 4850000 T A PFN1 Missense_Mutation p.E83V 0.33 deleterious(0) probably_damaging(0.931) TCGA-5P-A9KC-01 17 48545993 48545993 T A CHAD Missense_Mutation p.N61I 0.25 deleterious(0) probably_damaging(1) TCGA-5P-A9KC-01 17 62745949 62745949 A G hsa-mir-6080 RNA 0.32 TCGA-5P-A9KC-01 17 76130534 76130534 G A TMC8 Silent p.T292T 0.26 TCGA-5P-A9KC-01 17 7759109 7759109 C A TMEM88 3'UTR 0.40 TCGA-5P-A9KC-01 18 2913290 2913290 G T EMILIN2 Missense_Mutation p.G1017V 0.19 deleterious(0) probably_damaging(1) TCGA-5P-A9KC-01 18 619236 619236 G A CLUL1 Missense_Mutation p.D44N 0.12 tolerated(0.93) benign(0.004) TCGA-5P-A9KC-01 19 36884868 36884868 C T ZFP82 Missense_Mutation p.G125E 0.24 tolerated(0.52) benign(0) TCGA-5P-A9KC-01 19 44677042 44677042 C - ZNF226 Frame_Shift_Del p.P58Lfs*2 0.20 TCGA-5P-A9KC-01 1 114414310 114414310 G T PTPN22 5'UTR 0.09 TCGA-5P-A9KC-01 1 118420722 118420723 - T GDAP2 Frame_Shift_Ins p.I452Nfs*20 0.24 TCGA-5P-A9KC-01 1 151238063 151238063 G T PSMD4 Missense_Mutation p.S211I 0.27 deleterious(0.01) possibly_damaging(0.73) TCGA-5P-A9KC-01 1 160267412 160267412 C T COPA Missense_Mutation p.D710N 0.24 deleterious(0.03) benign(0.012) TCGA-5P-A9KC-01 1 16388654 16388654 C T FAM131C Missense_Mutation p.D70N 0.14 tolerated(0.16) benign(0.035) TCGA-5P-A9KC-01 1 183520249 183520249 G A SMG7 Missense_Mutation p.S1079N 0.24 tolerated_low_confidence(0.15) benign(0.004) TCGA-5P-A9KC-01 1 209778922 209778922 G C CAMK1G Missense_Mutation p.G113A 0.24 deleterious(0) probably_damaging(0.998) TCGA-5P-A9KC-01 1 21091954 21091954 C T HP1BP3 Missense_Mutation p.R269H 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-5P-A9KC-01 1 228879035 228879035 G A RHOU Missense_Mutation p.E109K 0.16 deleterious(0.04) possibly_damaging(0.486) TCGA-5P-A9KC-01 1 245850297 245850297 G A KIF26B Missense_Mutation p.D1338N 0.25 tolerated(0.13) unknown(0) TCGA-5P-A9KC-01 1 27681714 27681714 C T MAP3K6 3'UTR 0.29 TCGA-5P-A9KC-01 1 36564328 36564328 T G COL8A2 Silent p.P318P 0.25 TCGA-5P-A9KC-01 1 52520812 52520812 C T TXNDC12 5'UTR 0.18 TCGA-5P-A9KC-01 1 53704117 53704117 C - MAGOH Frame_Shift_Del p.E2Rfs*31 0.20 TCGA-5P-A9KC-01 1 71318320 71318320 A G PTGER3 3'UTR 0.20 TCGA-5P-A9KC-01 20 33054151 33054151 T G ITCH Intron 0.25 TCGA-5P-A9KC-01 20 34067123 34067123 A G CEP250 Missense_Mutation p.E721G 0.31 benign(0.041) TCGA-5P-A9KC-01 20 61982275 61982275 A G CHRNA4 Missense_Mutation p.I163T 0.18 deleterious(0) probably_damaging(1) TCGA-5P-A9KC-01 22 21343964 21343964 G T LZTR1 Missense_Mutation p.W215L 0.38 deleterious(0) probably_damaging(1) TCGA-5P-A9KC-01 22 24167567 24167568 AC - SMARCB1 Frame_Shift_Del p.Q318Afs*42 0.39 TCGA-5P-A9KC-01 22 42093483 42093483 G A C22orf46 3'UTR 0.41 TCGA-5P-A9KC-01 2 11959665 11959665 A - LPIN1 Frame_Shift_Del p.N870Tfs*27 0.24 TCGA-5P-A9KC-01 2 125320891 125320891 T A CNTNAP5 Missense_Mutation p.C582S 0.32 deleterious(0) probably_damaging(0.998) TCGA-5P-A9KC-01 2 170871867 170871867 T C UBR3 Missense_Mutation p.S1482P 0.34 tolerated(0.13) possibly_damaging(0.855) TCGA-5P-A9KC-01 2 202025647 202025647 A G CFLAR Missense_Mutation p.Q429R 0.26 deleterious(0.03) benign(0.208) TCGA-5P-A9KC-01 2 203817333 203817333 C T CARF Missense_Mutation p.P120S 0.26 tolerated_low_confidence(1) benign(0) TCGA-5P-A9KC-01 2 20482914 20482914 T C PUM2 Missense_Mutation p.Q505R 0.16 deleterious(0.01) benign(0.017) TCGA-5P-A9KC-01 2 209203274 209203293 CTTCAGAATGGAGAAAAAGG AGT PIKFYVE Splice_Site p.X1552_splice 0.15 TCGA-5P-A9KC-01 2 238462440 238462440 C A MLPH 3'UTR 0.37 TCGA-5P-A9KC-01 2 26805731 26805731 C G CIB4 Missense_Mutation p.E163D 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-5P-A9KC-01 2 27596784 27596784 G C SNX17 Silent p.G126G 0.30 TCGA-5P-A9KC-01 2 44531230 44531230 T C SLC3A1 Intron 0.20 TCGA-5P-A9KC-01 3 113673053 113673053 G C ZDHHC23 Missense_Mutation p.G223A 0.21 deleterious(0.04) benign(0.012) TCGA-5P-A9KC-01 3 119886373 119886373 C A GPR156 Missense_Mutation p.D651Y 0.06 tolerated(0.06) benign(0.219) TCGA-5P-A9KC-01 3 12650333 12650333 T A RAF1 Missense_Mutation p.K171N 0.28 deleterious(0) probably_damaging(0.99) TCGA-5P-A9KC-01 3 133557104 133557104 C T RAB6B Splice_Site p.X134_splice 0.31 TCGA-5P-A9KC-01 3 50382588 50382599 CTCGCCCTGGCT A ZMYND10 Frame_Shift_Del p.Q54Hfs*71 0.33 TCGA-5P-A9KC-01 3 50382599 50382599 T A ZMYND10 Missense_Mutation p.S53C 0.24 tolerated(0.13) benign(0.009) TCGA-5P-A9KC-01 4 1066753 1066753 T A RNF212 Missense_Mutation p.Q268L 0.23 deleterious_low_confidence(0) benign(0.094) TCGA-5P-A9KC-01 4 110980893 110980894 CG - ELOVL6 Frame_Shift_Del p.R80Nfs*20 0.17 TCGA-5P-A9KC-01 4 164440556 164440556 C A TMA16 Missense_Mutation p.P168T 0.03 deleterious_low_confidence(0.01) benign(0.118) TCGA-5P-A9KC-01 4 186083889 186083889 T C KIAA1430 3'UTR 0.24 TCGA-5P-A9KC-01 4 39117084 39117084 G T KLHL5 Intron 0.10 TCGA-5P-A9KC-01 4 71020033 71020033 A C C4orf40 5'UTR 0.15 TCGA-5P-A9KC-01 5 180670768 180670768 G C GNB2L1 Silent p.L11L 0.26 TCGA-5P-A9KC-01 5 306756 306756 G C PDCD6 Missense_Mutation p.S83T 0.24 tolerated(0.08) benign(0.001) TCGA-5P-A9KC-01 5 39153579 39153579 G T FYB Silent p.P431P 0.30 TCGA-5P-A9KC-01 5 50679335 50679335 G T ISL1 5'UTR 0.19 TCGA-5P-A9KC-01 5 7867443 7867443 T C FASTKD3 Missense_Mutation p.T252A 0.29 tolerated(0.36) benign(0.005) TCGA-5P-A9KC-01 6 11575790 11575797 TTTGAGGT - TMEM170B Missense_Mutation 0.13 TCGA-5P-A9KC-01 6 148840743 148840743 C G SASH1 Missense_Mutation p.S308C 0.26 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-5P-A9KC-01 6 1611211 1611211 G A FOXC1 Silent p.K177K 0.27 TCGA-5P-A9KC-01 6 163148791 163148791 T C PARK2 5'UTR 0.21 TCGA-5P-A9KC-01 6 16328017 16328017 C G ATXN1 Missense_Mutation p.E175D 0.28 tolerated(0.48) probably_damaging(0.99) TCGA-5P-A9KC-01 6 36291122 36291122 G C C6orf222 Missense_Mutation p.S473R 0.25 deleterious(0.01) possibly_damaging(0.883) TCGA-5P-A9KC-01 6 41051876 41051876 G A NFYA Missense_Mutation p.G85E 0.19 deleterious(0) unknown(0) TCGA-5P-A9KC-01 6 55145137 55145137 G A HCRTR2 Missense_Mutation p.A334T 0.29 tolerated(0.61) benign(0.001) TCGA-5P-A9KC-01 6 71508431 71508431 A G SMAP1 Silent p.T189T 0.25 TCGA-5P-A9KC-01 6 76388567 76388567 T G SENP6 Missense_Mutation p.S667A 0.21 deleterious(0.01) benign(0.073) TCGA-5P-A9KC-01 7 106829794 106829794 G A HBP1 Missense_Mutation p.E275K 0.47 deleterious(0.01) benign(0.397) TCGA-5P-A9KC-01 7 150491072 150491072 A G TMEM176B Missense_Mutation p.C98R 0.20 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KC-01 7 151082317 151082317 G A WDR86 Intron 0.20 TCGA-5P-A9KC-01 7 151082318 151082318 A T WDR86 Intron 0.20 TCGA-5P-A9KC-01 7 93519981 93519981 C T TFPI2 Missense_Mutation p.A4T 0.46 tolerated(0.34) benign(0) TCGA-5P-A9KC-01 7 93633545 93633545 G A BET1 5'UTR 0.22 TCGA-5P-A9KC-01 7 94294824 94294824 G T PEG10 3'UTR 0.07 TCGA-5P-A9KC-01 8 100888008 100888008 T G VPS13B 3'UTR 0.21 TCGA-5P-A9KC-01 8 146106965 146106965 A G ZNF250 Missense_Mutation p.C540R 0.23 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KC-01 8 19805804 19805804 C T LPL Missense_Mutation p.H68Y 0.32 deleterious(0.01) benign(0.279) TCGA-5P-A9KC-01 8 22777789 22777789 T A PEBP4 Missense_Mutation p.I56F 0.31 deleterious(0.01) benign(0.319) TCGA-5P-A9KC-01 9 5763340 5763340 T - KIAA1432 Frame_Shift_Del p.F772Sfs*8 0.24 TCGA-5P-A9KC-01 9 74764444 74764444 C T GDA 5'UTR 0.29 TCGA-5P-A9KC-01 X 154007573 154007573 G C MPP1 Missense_Mutation p.A427G 0.27 tolerated(1) benign(0.009) TCGA-5P-A9KC-01 X 77084678 77084678 T - MAGT1 3'UTR 0.22 TCGA-5P-A9KE-01 10 17171776 17171776 G T CUBN 5'UTR 0.22 TCGA-5P-A9KE-01 10 29821690 29821690 C - SVIL Frame_Shift_Del p.E536Kfs*25 0.22 TCGA-5P-A9KE-01 10 70644560 70644560 G T STOX1 Missense_Mutation p.Q336H 0.31 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KE-01 10 88678972 88678972 G C BMPR1A Missense_Mutation p.Q304H 0.24 deleterious(0.02) benign(0.019) TCGA-5P-A9KE-01 11 118498570 118498570 G C PHLDB1 Missense_Mutation p.R344P 0.23 deleterious(0.03) benign(0.358) TCGA-5P-A9KE-01 11 12263967 12263967 A T MICAL2 Missense_Mutation p.E848D 0.29 tolerated_low_confidence(0.07) benign(0.009) TCGA-5P-A9KE-01 11 62744239 62744239 G T SLC22A6 3'UTR 0.30 TCGA-5P-A9KE-01 11 65480178 65480178 G A KAT5 Intron 0.30 TCGA-5P-A9KE-01 12 117178872 117178872 G C RNFT2 Missense_Mutation p.S19T 0.19 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-5P-A9KE-01 12 123340130 123340131 - C HIP1R Frame_Shift_Ins p.N345Qfs*13 0.24 TCGA-5P-A9KE-01 12 19615597 19615597 C T AEBP2 Silent p.S275S 0.15 TCGA-5P-A9KE-01 12 48579276 48579276 G C C12orf68 3'UTR 0.24 TCGA-5P-A9KE-01 12 53011930 53011930 T G KRT73 Missense_Mutation p.K127Q 0.18 tolerated(0.11) possibly_damaging(0.891) TCGA-5P-A9KE-01 12 62892784 62892784 C G MON2 Missense_Mutation p.T174S 0.20 tolerated(1) benign(0.013) TCGA-5P-A9KE-01 13 23929405 23929405 G C SACS Missense_Mutation p.P449R 0.20 probably_damaging(0.999) TCGA-5P-A9KE-01 13 25373622 25373622 A G RNF17 Missense_Mutation p.R497G 0.31 tolerated(0.24) probably_damaging(0.966) TCGA-5P-A9KE-01 13 27333950 27333950 C T GPR12 Silent p.L5L 0.24 TCGA-5P-A9KE-01 14 106354432 106354432 A - IGHD2-21 Frame_Shift_Del p.I2Nfs*? 0.19 TCGA-5P-A9KE-01 14 23893155 23893155 C A MYH7 Silent p.L961L 0.28 TCGA-5P-A9KE-01 14 55515206 55515206 A G SOCS4 3'UTR 0.30 TCGA-5P-A9KE-01 14 74531541 74531541 T A ALDH6A1 Missense_Mutation p.N496I 0.25 deleterious(0) probably_damaging(0.958) TCGA-5P-A9KE-01 15 33941289 33941289 T A RYR3 Missense_Mutation p.I1332N 0.28 possibly_damaging(0.485) TCGA-5P-A9KE-01 15 33941290 33941290 C T RYR3 Silent p.I1332I 0.30 TCGA-5P-A9KE-01 15 40268924 40268924 G A EIF2AK4 Missense_Mutation p.E710K 0.20 deleterious(0) probably_damaging(0.945) TCGA-5P-A9KE-01 15 42839565 42839565 C A LRRC57 Missense_Mutation p.S129I 0.32 tolerated(0.12) benign(0.176) TCGA-5P-A9KE-01 15 43495415 43495415 G T EPB42 Missense_Mutation p.N589K 0.30 deleterious(0) possibly_damaging(0.885) TCGA-5P-A9KE-01 15 51758502 51758502 G A DMXL2 Missense_Mutation p.L2467F 0.34 deleterious(0.03) probably_damaging(1) TCGA-5P-A9KE-01 15 63446073 63446073 A G RPS27L 3'UTR 0.20 TCGA-5P-A9KE-01 15 65275919 65275919 A G SPG21 5'UTR 0.31 TCGA-5P-A9KE-01 16 22130234 22130234 C - VWA3A Frame_Shift_Del p.R335Gfs*49 0.14 TCGA-5P-A9KE-01 16 3141821 3141821 C T ZSCAN10 Missense_Mutation p.G170S 0.17 tolerated(0.06) benign(0.019) TCGA-5P-A9KE-01 16 67199508 67199508 G T HSF4 Silent p.A69A 0.22 TCGA-5P-A9KE-01 17 18232685 18232685 G A SHMT1 Missense_Mutation p.R397W 0.16 tolerated(0.19) probably_damaging(0.977) TCGA-5P-A9KE-01 17 28380417 28380417 G A EFCAB5 Missense_Mutation p.S482N 0.18 tolerated(0.43) benign(0.013) TCGA-5P-A9KE-01 17 28380419 28380419 A T EFCAB5 Nonsense_Mutation p.K483* 0.17 TCGA-5P-A9KE-01 17 36880963 36880991 CCCATGGCCAGCCTGCTGGCAGGAAGCTC - MLLT6 Frame_Shift_Del p.P992Hfs*82 0.35 TCGA-5P-A9KE-01 17 40481785 40481785 C T STAT3 Silent p.G373G 0.32 TCGA-5P-A9KE-01 17 40481786 40481786 C A STAT3 Missense_Mutation p.G373V 0.31 tolerated(0.19) benign(0.241) TCGA-5P-A9KE-01 17 422535 422535 G T VPS53 Missense_Mutation p.L778M 0.10 deleterious(0.04) possibly_damaging(0.805) TCGA-5P-A9KE-01 17 42949881 42949881 G A EFTUD2 Silent p.F309F 0.45 TCGA-5P-A9KE-01 17 46128721 46128721 C A NFE2L1 Silent p.R81R 0.37 TCGA-5P-A9KE-01 17 4788851 4788851 G A MINK1 Nonsense_Mutation p.W194* 0.29 TCGA-5P-A9KE-01 17 57754372 57754372 T C CLTC Silent p.P873P 0.37 TCGA-5P-A9KE-01 17 67170897 67170897 A G ABCA10 Missense_Mutation p.W967R 0.24 tolerated(1) benign(0.02) TCGA-5P-A9KE-01 17 7187813 7187813 G A SLC2A4 Missense_Mutation p.R246H 0.20 deleterious(0.02) possibly_damaging(0.667) TCGA-5P-A9KE-01 17 76187110 76187110 C A AFMID Silent p.A41A 0.17 TCGA-5P-A9KE-01 18 50432459 50432459 T G DCC Missense_Mutation p.M153R 0.28 tolerated(0.6) benign(0) TCGA-5P-A9KE-01 18 60017119 60017119 G C TNFRSF11A Missense_Mutation p.D78H 0.37 deleterious(0.02) benign(0.339) TCGA-5P-A9KE-01 19 10602767 10602767 C A KEAP1 Missense_Mutation p.V271L 0.27 deleterious(0) probably_damaging(0.927) TCGA-5P-A9KE-01 19 7083714 7083714 T C ZNF557 Missense_Mutation p.Y418H 0.22 tolerated(0.49) probably_damaging(0.934) TCGA-5P-A9KE-01 1 110035211 110035211 A G ATXN7L2 Missense_Mutation p.K720E 0.22 tolerated_low_confidence(0.05) benign(0.002) TCGA-5P-A9KE-01 1 114942184 114942184 G A TRIM33 Silent p.T1005T 0.26 TCGA-5P-A9KE-01 1 117699520 117699520 T C VTCN1 Missense_Mutation p.T41A 0.29 tolerated(0.69) benign(0.066) TCGA-5P-A9KE-01 1 144881617 144881617 A T PDE4DIP Missense_Mutation p.D1193E 0.13 tolerated(0.82) benign(0.007) TCGA-5P-A9KE-01 1 156279019 156279019 C G CCT3 Missense_Mutation p.G537R 0.24 tolerated(0.06) benign(0.056) TCGA-5P-A9KE-01 1 158621173 158621173 C G SPTA1 Missense_Mutation p.G1154A 0.23 tolerated(1) probably_damaging(0.94) TCGA-5P-A9KE-01 1 209956492 209956492 T C C1orf74 Missense_Mutation p.H163R 0.28 tolerated(0.35) benign(0) TCGA-5P-A9KE-01 1 216595303 216595303 T C USH2A Missense_Mutation p.S126G 0.23 possibly_damaging(0.627) TCGA-5P-A9KE-01 1 32118334 32118334 C G COL16A1 Missense_Mutation p.C1578S 0.31 probably_damaging(0.989) TCGA-5P-A9KE-01 1 6212475 6212475 G T CHD5 Silent p.S289S 0.16 TCGA-5P-A9KE-01 1 94360206 94360206 A G GCLM Missense_Mutation p.F207L 0.18 tolerated(0.3) benign(0.253) TCGA-5P-A9KE-01 20 3669111 3669111 C G SIGLEC1 3'UTR 0.20 TCGA-5P-A9KE-01 22 17590035 17590035 A C IL17RA Missense_Mutation p.E642D 0.24 tolerated(0.2) possibly_damaging(0.501) TCGA-5P-A9KE-01 22 18300493 18300493 C T MICAL3 Missense_Mutation p.R1645H 0.18 benign(0.183) TCGA-5P-A9KE-01 22 19163563 19163563 T C SLC25A1 3'UTR 0.27 TCGA-5P-A9KE-01 22 22024222 22024222 A T PPIL2 Missense_Mutation p.Y18F 0.05 deleterious(0) benign(0.311) TCGA-5P-A9KE-01 22 28193956 28193956 T A MN1 Missense_Mutation p.K859I 0.29 probably_damaging(0.999) TCGA-5P-A9KE-01 22 29628294 29628294 C A EMID1 Silent p.T242T 0.35 TCGA-5P-A9KE-01 2 113496312 113496312 C G CKAP2L 3'UTR 0.34 TCGA-5P-A9KE-01 2 118578868 118578868 G A DDX18 Missense_Mutation p.G216S 0.28 deleterious(0.03) possibly_damaging(0.885) TCGA-5P-A9KE-01 2 170062024 170062024 A G LRP2 Silent p.Y2560Y 0.33 TCGA-5P-A9KE-01 2 178095474 178095475 - A NFE2L2 3'UTR 0.20 TCGA-5P-A9KE-01 2 179466287 179466287 T A TTN Silent p.V18479V 0.24 TCGA-5P-A9KE-01 2 188245407 188245407 A T CALCRL Missense_Mutation p.S98T 0.16 tolerated(0.78) benign(0.015) TCGA-5P-A9KE-01 2 190044338 190044338 T A COL5A2 5'UTR 0.24 TCGA-5P-A9KE-01 2 196674585 196674585 G T DNAH7 Missense_Mutation p.L3258I 0.26 tolerated(0.23) probably_damaging(0.956) TCGA-5P-A9KE-01 2 208576635 208576635 G A CCNYL1 Silent p.L5L 0.25 TCGA-5P-A9KE-01 2 231741620 231741620 G C ITM2C Missense_Mutation p.E167Q 0.21 deleterious(0.03) probably_damaging(1) TCGA-5P-A9KE-01 2 73868781 73868782 - T NAT8 5'UTR 0.25 TCGA-5P-A9KE-01 2 88390544 88390544 G C SMYD1 Missense_Mutation p.G181A 0.22 tolerated(0.31) benign(0.046) TCGA-5P-A9KE-01 3 10346761 10346761 G A SEC13 Missense_Mutation p.P222S 0.28 deleterious(0.01) probably_damaging(0.984) TCGA-5P-A9KE-01 3 121289566 121289566 G A ARGFX Silent p.R2R 0.04 TCGA-5P-A9KE-01 3 183602589 183602589 C A PARL Missense_Mutation p.A16S 0.16 tolerated_low_confidence(0.46) benign(0.009) TCGA-5P-A9KE-01 3 41268729 41268729 G C CTNNB1 Missense_Mutation p.A323P 0.26 tolerated(0.1) benign(0.019) TCGA-5P-A9KE-01 3 49568721 49568721 C G DAG1 Silent p.S259S 0.35 TCGA-5P-A9KE-01 3 53845165 53845165 G A CACNA1D Missense_Mutation p.R2093H 0.27 tolerated_low_confidence(0.27) possibly_damaging(0.754) TCGA-5P-A9KE-01 3 56694957 56694957 A C FAM208A Missense_Mutation p.L417V 0.18 tolerated(0.7) benign(0.005) TCGA-5P-A9KE-01 3 97983970 97983970 C T OR5H6 Missense_Mutation p.P281L 0.34 tolerated(0.4) benign(0.009) TCGA-5P-A9KE-01 4 10022970 10022970 C T SLC2A9 Silent p.G28G 0.44 TCGA-5P-A9KE-01 4 126372770 126372770 T C FAT4 Silent p.T3533T 0.21 TCGA-5P-A9KE-01 4 174253007 174253007 A T HMGB2 3'UTR 0.29 TCGA-5P-A9KE-01 5 111312420 111312420 T A NREP Missense_Mutation p.N6I 0.22 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-5P-A9KE-01 5 122713195 122713195 C T CEP120 Missense_Mutation p.R744H 0.22 tolerated(1) benign(0.001) TCGA-5P-A9KE-01 5 127800434 127800434 C T FBN2 Missense_Mutation p.R270H 0.30 tolerated(0.49) possibly_damaging(0.84) TCGA-5P-A9KE-01 5 170814986 170814986 C A NPM1 Missense_Mutation p.L12M 0.27 tolerated(0.24) benign(0.291) TCGA-5P-A9KE-01 5 180670822 180670822 C T GNB2L1 5'UTR 0.23 TCGA-5P-A9KE-01 5 21501869 21501869 C G GUSBP1 RNA 0.18 TCGA-5P-A9KE-01 5 26890623 26890623 G A CDH9 Missense_Mutation p.S435L 0.30 tolerated(0.07) benign(0.158) TCGA-5P-A9KE-01 5 43294862 43294863 - GT HMGCS1 Frame_Shift_Ins p.L336Hfs*23 0.23 TCGA-5P-A9KE-01 5 56207069 56207069 A C SETD9 Missense_Mutation p.K58Q 0.24 tolerated(0.21) benign(0.063) TCGA-5P-A9KE-01 5 93076952 93076952 G C POU5F2 Silent p.A106A 0.23 TCGA-5P-A9KE-01 6 117121778 117121778 T A GPRC6A Missense_Mutation p.Q506L 0.14 tolerated(0.22) benign(0.01) TCGA-5P-A9KE-01 6 167786636 167786636 T C TCP10 3'UTR 0.14 TCGA-5P-A9KE-01 6 30558445 30558445 G A ABCF1 Silent p.L835L 0.28 TCGA-5P-A9KE-01 6 35437954 35437954 A G RPL10A Splice_Site p.X104_splice 0.34 TCGA-5P-A9KE-01 6 39082699 39082699 G C SAYSD1 Missense_Mutation p.P56R 0.27 tolerated(0.16) benign(0.003) TCGA-5P-A9KE-01 6 44201182 44201182 G C SLC29A1 Missense_Mutation p.A430P 0.16 deleterious(0) probably_damaging(1) TCGA-5P-A9KE-01 7 107217029 107217029 G T DUS4L Missense_Mutation p.G233V 0.17 deleterious(0.01) probably_damaging(0.961) TCGA-5P-A9KE-01 7 150840437 150840437 G T AGAP3 Missense_Mutation p.K761N 0.38 deleterious(0) probably_damaging(0.944) TCGA-5P-A9KE-01 7 73097483 73097483 A G DNAJC30 Missense_Mutation p.F91L 0.16 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KE-01 7 99686979 99686979 T C COPS6 Missense_Mutation p.I48T 0.18 deleterious(0) probably_damaging(0.93) TCGA-5P-A9KE-01 8 145689559 145689559 C T CYHR1 Intron 0.32 TCGA-5P-A9KE-01 8 38369906 38369906 T C C8orf86 Silent p.%3D 0.29 TCGA-5P-A9KE-01 9 130489350 130489354 GGAGG - TTC16 Frame_Shift_Del p.E510Qfs*15 0.27 TCGA-5P-A9KE-01 9 131486400 131486400 G A ZDHHC12 5'Flank 0.29 TCGA-5P-A9KE-01 9 135781381 135781381 G A TSC1 Silent p.G528G 0.25 TCGA-5P-A9KE-01 X 32535954 32535954 T C DMD Intron 0.63 TCGA-5P-A9KE-01 X 44929004 44929005 - A KDM6A Frame_Shift_Ins p.H702Qfs*28 0.37 TCGA-5P-A9KH-01 10 12228325 12228325 G A NUDT5 5'UTR 0.09 TCGA-5P-A9KH-01 11 111952588 111952588 A C C11orf57 Intron 0.55 TCGA-5P-A9KH-01 11 5730402 5730402 G A TRIM22 Missense_Mutation p.A341T 0.35 tolerated(0.38) benign(0.003) TCGA-5P-A9KH-01 12 49438022 49438022 G T KMT2D Missense_Mutation p.Q1717K 0.46 benign(0.406) TCGA-5P-A9KH-01 12 8388284 8388284 G C RP11-266K4.9 RNA 0.38 TCGA-5P-A9KH-01 14 24475197 24475197 G A DHRS4L2 3'UTR 0.37 TCGA-5P-A9KH-01 14 53101695 53101695 G T GPR137C Missense_Mutation p.M384I 0.37 tolerated(1) benign(0.002) TCGA-5P-A9KH-01 15 45415103 45415103 G A DUOXA1 Missense_Mutation p.T37M 0.43 deleterious(0) probably_damaging(0.96) TCGA-5P-A9KH-01 15 45879566 45879566 C T BLOC1S6 5'UTR 0.08 TCGA-5P-A9KH-01 15 95001475 95001477 AGT - MCTP2 Splice_Site p.X787_splice 0.25 TCGA-5P-A9KH-01 17 18429065 18429065 A G FAM106A 3'UTR 0.14 TCGA-5P-A9KH-01 17 47921450 47921450 C A TAC4 Missense_Mutation p.G65W 0.71 deleterious(0) probably_damaging(0.999) TCGA-5P-A9KH-01 17 6594200 6594200 C T SLC13A5 Silent p.P445P 0.79 TCGA-5P-A9KH-01 17 7577515 7577517 TGA - TP53 In_Frame_Del p.I255del 0.26 TCGA-5P-A9KH-01 19 42866746 42866746 A G MEGF8 Missense_Mutation p.T1952A 0.25 tolerated(0.07) possibly_damaging(0.472) TCGA-5P-A9KH-01 19 49012162 49012162 G A LMTK3 Missense_Mutation p.A197V 0.07 benign(0.171) TCGA-5P-A9KH-01 1 186114982 186114982 G T HMCN1 Silent p.V4845V 0.70 TCGA-5P-A9KH-01 1 55337259 55337259 C T DHCR24 Missense_Mutation p.V214I 0.06 tolerated(0.71) benign(0.089) TCGA-5P-A9KH-01 1 906525 906525 G A PLEKHN1 Silent p.G215G 0.06 TCGA-5P-A9KH-01 20 49626294 49626294 G A KCNG1 Silent p.R194R 0.30 TCGA-5P-A9KH-01 2 132289289 132289289 C T CCDC74A Silent p.D199D 0.61 TCGA-5P-A9KH-01 2 207631573 207631573 A T FASTKD2 Missense_Mutation p.K52N 0.03 deleterious(0.03) benign(0.048) TCGA-5P-A9KH-01 3 123675552 123675552 G T CCDC14 Intron 0.04 TCGA-5P-A9KH-01 3 45266700 45266700 G A TMEM158 Missense_Mutation p.P274S 0.15 tolerated_low_confidence(0.54) unknown(0) TCGA-5P-A9KH-01 4 128904113 128904113 G A C4orf29 Translation_Start_Site p.M1? 0.38 deleterious(0.01) possibly_damaging(0.77) TCGA-5P-A9KH-01 4 25834646 25834646 G A SEL1L3 Nonsense_Mutation p.R357* 0.43 TCGA-5P-A9KH-01 5 147484552 147484552 G A SPINK5 Missense_Mutation p.E490K 0.21 deleterious(0.01) possibly_damaging(0.637) TCGA-5P-A9KH-01 5 160973398 160973398 C T GABRB2 Missense_Mutation p.M33I 0.14 tolerated(0.21) benign(0.023) TCGA-5P-A9KH-01 6 11105250 11105250 T C ERVFRD-1 Silent p.Q98Q 0.06 TCGA-5P-A9KH-01 7 100410509 100410509 C A EPHB4 Nonsense_Mutation p.E660* 0.43 TCGA-5P-A9KH-01 7 150771197 150771197 G A SLC4A2 Missense_Mutation p.M869I 0.33 tolerated(0.39) benign(0) TCGA-5P-A9KH-01 7 86394802 86394802 G A GRM3 Missense_Mutation p.R114K 0.09 tolerated(0.08) benign(0.101) TCGA-5P-A9KH-01 8 2037960 2037960 G T MYOM2 Missense_Mutation p.G592C 0.51 deleterious(0) probably_damaging(1) TCGA-5P-A9KH-01 8 59343157 59343158 - AAG UBXN2B In_Frame_Ins p.E91dup 0.11 TCGA-5P-A9KH-01 9 79465477 79465477 G A PRUNE2 Silent p.S82S 0.39 TCGA-A4-7286-01 10 129245700 129245700 T A DOCK1 Missense_Mutation p.V1798D 0.21 tolerated(0.32) possibly_damaging(0.804) TCGA-A4-7286-01 11 22363111 22363112 GA - SLC17A6 Frame_Shift_Del p.E42Afs*149 0.16 TCGA-A4-7286-01 11 46920187 46920187 T A LRP4 Missense_Mutation p.S240C 0.23 deleterious(0.01) possibly_damaging(0.864) TCGA-A4-7286-01 11 6281226 6281226 G C CCKBR Missense_Mutation p.R23P 0.25 tolerated_low_confidence(0.07) benign(0.002) TCGA-A4-7286-01 12 105428135 105428135 A C ALDH1L2 Missense_Mutation p.I729M 0.19 deleterious(0) probably_damaging(0.997) TCGA-A4-7286-01 12 122107353 122107353 G - MORN3 Frame_Shift_Del p.L13Cfs*21 0.18 TCGA-A4-7286-01 12 15784493 15784493 C A EPS8 Missense_Mutation p.A643S 0.17 tolerated(0.22) benign(0.009) TCGA-A4-7286-01 12 46320210 46320210 G T SCAF11 Missense_Mutation p.Q1092K 0.16 deleterious(0.02) benign(0.18) TCGA-A4-7286-01 12 57828750 57828750 A C INHBC Silent p.P27P 0.15 TCGA-A4-7286-01 12 62986577 62986577 G C MON2 3'UTR 0.20 TCGA-A4-7286-01 13 25171595 25171595 T C RP11-556N21.1 RNA 0.23 TCGA-A4-7286-01 13 26788332 26788332 T A RNF6 Missense_Mutation p.S563C 0.27 deleterious(0.01) possibly_damaging(0.599) TCGA-A4-7286-01 14 20857434 20857434 C T TEP1 Missense_Mutation p.D830N 0.25 tolerated(0.09) benign(0.014) TCGA-A4-7286-01 15 25959389 25959389 C G ATP10A Splice_Site p.X593_splice 0.11 TCGA-A4-7286-01 17 19575183 19575183 T A ALDH3A2 Missense_Mutation p.F453I 0.21 tolerated(0.07) benign(0.087) TCGA-A4-7286-01 17 25937030 25937030 A G KSR1 Intron 0.16 TCGA-A4-7286-01 17 27038593 27038593 C T PROCA1 Missense_Mutation p.C29Y 0.13 tolerated(0.2) benign(0.021) TCGA-A4-7286-01 17 77079593 77079593 C G ENGASE Missense_Mutation p.P391R 0.13 tolerated(0.18) probably_damaging(0.948) TCGA-A4-7286-01 17 79094952 79094952 A T AATK Silent p.S928S 0.23 TCGA-A4-7286-01 19 50017180 50017180 T C FCGRT Missense_Mutation p.S39P 0.27 tolerated(0.1) benign(0.014) TCGA-A4-7286-01 1 20067299 20067299 T C TMCO4 Missense_Mutation p.Q338R 0.05 deleterious(0) probably_damaging(0.931) TCGA-A4-7286-01 20 18142850 18142850 C G CSRP2BP Missense_Mutation p.P357A 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-A4-7286-01 20 30137040 30137040 G A HM13 Missense_Mutation p.A191T 0.17 tolerated(0.09) benign(0.267) TCGA-A4-7286-01 20 36758616 36758616 G C TGM2 3'UTR 0.12 TCGA-A4-7286-01 20 40080522 40080522 C G CHD6 Missense_Mutation p.W1156S 0.15 deleterious(0) probably_damaging(0.989) TCGA-A4-7286-01 20 49367023 49367023 T C PARD6B Nonstop_Mutation p.*373Rext*13 0.17 TCGA-A4-7286-01 20 62648174 62648174 T C PRPF6 Silent p.H541H 0.16 TCGA-A4-7286-01 2 139308572 139308572 A G SPOPL Silent p.A100A 0.26 TCGA-A4-7286-01 2 143718222 143718222 C G KYNU Missense_Mutation p.I204M 0.15 deleterious(0) probably_damaging(0.992) TCGA-A4-7286-01 2 160665004 160665004 T C LY75-CD302 Missense_Mutation p.N1593S 0.25 tolerated(0.41) possibly_damaging(0.801) TCGA-A4-7286-01 2 24991159 24991159 C T NCOA1 Silent p.L1409L 0.20 TCGA-A4-7286-01 2 37319335 37319335 A C GPATCH11 Missense_Mutation p.E155D 0.31 tolerated(0.12) benign(0.179) TCGA-A4-7286-01 2 37319336 37319336 A T GPATCH11 Missense_Mutation p.M156L 0.31 tolerated(0.55) benign(0) TCGA-A4-7286-01 2 74657398 74657398 A G RTKN Missense_Mutation p.F176L 0.17 deleterious(0.02) possibly_damaging(0.793) TCGA-A4-7286-01 3 38159473 38159473 A G DLEC1 Silent p.S1554S 0.24 TCGA-A4-7286-01 4 119952706 119952706 A T SYNPO2 Missense_Mutation p.N926Y 0.28 deleterious(0) probably_damaging(1) TCGA-A4-7286-01 4 3441324 3441324 T C RGS12 Silent p.P1419P 0.19 TCGA-A4-7286-01 4 78082688 78082688 C T CCNG2 Nonsense_Mutation p.R195* 0.16 TCGA-A4-7286-01 5 121188229 121188229 G A FTMT Missense_Mutation p.D191N 0.25 tolerated(0.05) benign(0.088) TCGA-A4-7286-01 5 180687083 180687083 G T TRIM52 Silent p.A244A 0.24 TCGA-A4-7286-01 7 103234873 103234873 G C RELN Silent p.P1202P 0.06 TCGA-A4-7286-01 7 33014881 33014881 C - FKBP9 Frame_Shift_Del p.Y153Ifs*17 0.13 TCGA-A4-7286-01 7 44607797 44607797 T G DDX56 Missense_Mutation p.D470A 0.15 deleterious(0) probably_damaging(0.988) TCGA-A4-7286-01 8 10388999 10388999 C G PRSS55 Missense_Mutation p.P181R 0.11 tolerated(0.38) benign(0.079) TCGA-A4-7286-01 8 110131438 110131438 G A TRHR Silent p.P317P 0.20 TCGA-A4-7286-01 8 139790649 139790649 C T COL22A1 Missense_Mutation p.G569R 0.33 unknown(0) TCGA-A4-7286-01 9 101533259 101533259 A T ANKS6 Missense_Mutation p.F631I 0.24 tolerated(0.06) benign(0.088) TCGA-A4-7286-01 9 101980774 101980774 G A ALG2 Silent p.I231I 0.28 TCGA-A4-7286-01 X 102004858 102004858 G C BHLHB9 Missense_Mutation p.C312S 0.29 deleterious(0) probably_damaging(1) TCGA-A4-7287-01 11 57996225 57996225 C T OR10Q1 Missense_Mutation p.M41I 0.27 tolerated(0.38) benign(0.064) TCGA-A4-7287-01 12 54764720 54764720 T C ZNF385A Silent p.Q275Q 0.28 TCGA-A4-7287-01 12 93100691 93100691 C G C12orf74 Missense_Mutation p.S95C 0.28 tolerated(0.06) benign(0.022) TCGA-A4-7287-01 13 37453851 37453851 C T SMAD9 5'UTR 0.38 TCGA-A4-7287-01 17 21319100 21319100 G A KCNJ12 Missense_Mutation p.R149H 0.08 deleterious(0) probably_damaging(1) TCGA-A4-7287-01 17 40717244 40717244 G T COASY Splice_Site p.X464_splice 0.18 TCGA-A4-7287-01 17 40997487 40997487 G C AOC2 Missense_Mutation p.V282L 0.22 deleterious(0.03) benign(0.004) TCGA-A4-7287-01 17 44101444 44101444 C G MAPT Silent p.V746V 0.06 TCGA-A4-7287-01 18 2616466 2616466 G C NDC80 Missense_Mutation p.D608H 0.26 tolerated(0.08) possibly_damaging(0.467) TCGA-A4-7287-01 18 2616517 2616517 G C NDC80 Missense_Mutation p.E625Q 0.23 tolerated(0.22) benign(0.046) TCGA-A4-7287-01 18 662242 662242 A G TYMS Missense_Mutation p.R126G 0.15 deleterious(0.03) possibly_damaging(0.522) TCGA-A4-7287-01 19 12800616 12800616 G A FBXW9 Missense_Mutation p.H369Y 0.24 tolerated(0.3) benign(0.018) TCGA-A4-7287-01 19 18778682 18778682 G A KLHL26 Missense_Mutation p.A159T 0.06 tolerated(0.23) possibly_damaging(0.699) TCGA-A4-7287-01 19 20188901 20188901 A T ZNF90 5'UTR 0.37 TCGA-A4-7287-01 19 43967294 43967300 GTTGCCG - LYPD3 Frame_Shift_Del p.D174Efs*4 0.20 TCGA-A4-7287-01 1 100327977 100327977 C G AGL Nonsense_Mutation p.S153* 0.22 TCGA-A4-7287-01 1 156843561 156843561 C T NTRK1 Silent p.F329F 0.32 TCGA-A4-7287-01 1 170501324 170501324 C T GORAB Missense_Mutation p.A12V 0.16 tolerated_low_confidence(0.32) benign(0) TCGA-A4-7287-01 1 192321246 192321246 C A RGS21 Missense_Mutation p.A53D 0.22 deleterious(0) probably_damaging(1) TCGA-A4-7287-01 1 193099338 193099338 G A CDC73 Missense_Mutation p.R91Q 0.12 deleterious(0) probably_damaging(1) TCGA-A4-7287-01 1 203832834 203832834 G A SNRPE Missense_Mutation p.R42Q 0.34 tolerated(0.1) benign(0.004) TCGA-A4-7287-01 1 203832835 203832835 G A SNRPE Silent p.R42R 0.35 TCGA-A4-7287-01 1 20440719 20440719 C T PLA2G2D Missense_Mutation p.C109Y 0.25 deleterious(0) probably_damaging(1) TCGA-A4-7287-01 1 225599084 225599084 A T LBR Missense_Mutation p.F381L 0.19 tolerated(0.17) benign(0.252) TCGA-A4-7287-01 20 1615980 1615980 C A SIRPG Silent p.A338A 0.26 TCGA-A4-7287-01 20 62203482 62203482 G A HELZ2 Missense_Mutation p.S86F 0.22 deleterious(0) possibly_damaging(0.646) TCGA-A4-7287-01 20 62642850 62642850 G C PRPF6 Missense_Mutation p.W506C 0.13 deleterious(0) probably_damaging(0.946) TCGA-A4-7287-01 21 18938063 18938063 T C CXADR 3'UTR 0.35 TCGA-A4-7287-01 21 47571511 47571511 G T FTCD Silent p.I199I 0.25 TCGA-A4-7287-01 22 19028613 19028613 C T DGCR2 Missense_Mutation p.E452K 0.17 deleterious(0) probably_damaging(0.993) TCGA-A4-7287-01 2 56420491 56420491 G A CCDC85A Missense_Mutation p.G386R 0.25 deleterious(0.01) possibly_damaging(0.788) TCGA-A4-7287-01 3 167170764 167170764 G A SERPINI2 Silent p.T308T 0.38 TCGA-A4-7287-01 3 50340364 50340364 G C HYAL1 Missense_Mutation p.I8M 0.15 deleterious(0.02) benign(0.302) TCGA-A4-7287-01 4 126371574 126371574 G A FAT4 Missense_Mutation p.G3135S 0.41 benign(0.167) TCGA-A4-7287-01 4 71892401 71892401 C A DCK Missense_Mutation p.Q229K 0.34 tolerated(1) benign(0.002) TCGA-A4-7287-01 5 140209735 140209735 G A PCDHA6 Missense_Mutation p.A687T 0.06 tolerated_low_confidence(0.26) benign(0.004) TCGA-A4-7287-01 6 112454683 112454683 G C LAMA4 Silent p.L1188L 0.23 TCGA-A4-7287-01 6 26104205 26104205 C G HIST1H4C Silent p.G10G 0.22 TCGA-A4-7287-01 6 28116192 28116192 G A ZKSCAN8 Missense_Mutation p.E3K 0.28 tolerated(0.05) benign(0.002) TCGA-A4-7287-01 6 49696475 49696475 C T CRISP3 Missense_Mutation p.A259T 0.32 deleterious(0.01) possibly_damaging(0.709) TCGA-A4-7287-01 6 70990561 70990561 G A COL9A1 Missense_Mutation p.P310L 0.31 unknown(0) TCGA-A4-7287-01 6 76660465 76660465 G C IMPG1 Missense_Mutation p.F546L 0.23 tolerated(0.51) benign(0.022) TCGA-A4-7287-01 6 76660529 76660529 G A IMPG1 Missense_Mutation p.S525F 0.19 tolerated(0.1) benign(0.023) TCGA-A4-7287-01 6 76660533 76660533 G A IMPG1 Silent p.L524L 0.22 TCGA-A4-7287-01 6 76660636 76660636 G A IMPG1 Silent p.I489I 0.24 TCGA-A4-7287-01 8 37730588 37730589 - G RAB11FIP1 Frame_Shift_Ins p.S578Lfs*2 0.28 TCGA-A4-7287-01 8 9912062 9912062 C T MSRA Silent p.L12L 0.36 TCGA-A4-7287-01 8 9912103 9912103 C T MSRA Missense_Mutation p.S26L 0.30 tolerated(0.23) benign(0.102) TCGA-A4-7287-01 9 104170234 104170234 G C ZNF189 Missense_Mutation p.E62Q 0.27 tolerated(0.41) benign(0.029) TCGA-A4-7287-01 9 135796822 135796826 GGCTA - TSC1 Splice_Site p.X222_splice 0.37 TCGA-A4-7287-01 9 139745344 139745345 - C PHPT1 3'UTR 0.39 TCGA-A4-7287-01 9 40716117 40716117 G C FAM74A3 RNA 0.13 TCGA-A4-7287-01 X 123197834 123197834 C A STAG2 Nonsense_Mutation p.S653* 0.24 TCGA-A4-7287-01 X 64936758 64936758 G C MSN Missense_Mutation p.D31H 0.17 deleterious(0) possibly_damaging(0.569) TCGA-A4-7287-01 X 70782731 70782731 C T OGT Missense_Mutation p.A671V 0.24 deleterious(0) benign(0.319) TCGA-A4-7287-01 X 77218182 77218182 A T ATP7A Intron 0.23 TCGA-A4-7288-01 10 50530974 50530974 G - C10orf71 Frame_Shift_Del p.P129Qfs*5 0.23 TCGA-A4-7288-01 11 1075662 1075662 C G MUC2 Missense_Mutation p.R30G 0.26 possibly_damaging(0.762) TCGA-A4-7288-01 11 118272388 118272388 A G ATP5L Missense_Mutation p.Q3R 0.41 tolerated(0.13) benign(0.004) TCGA-A4-7288-01 11 129724698 129724698 A G TMEM45B Silent p.A124A 0.38 TCGA-A4-7288-01 11 26725402 26725402 A G SLC5A12 Silent p.H206H 0.41 TCGA-A4-7288-01 11 33083137 33083137 G C TCP11L1 Missense_Mutation p.K279N 0.41 tolerated(0.42) benign(0.219) TCGA-A4-7288-01 11 406878 406878 G T SIGIRR Missense_Mutation p.L282M 0.50 tolerated(0.19) possibly_damaging(0.863) TCGA-A4-7288-01 11 47605943 47605943 G A NDUFS3 Silent p.L235L 0.42 TCGA-A4-7288-01 11 63403801 63403802 - A ATL3 Frame_Shift_Ins p.A286Cfs*3 0.31 TCGA-A4-7288-01 11 75298058 75298058 G A MAP6 3'UTR 0.52 TCGA-A4-7288-01 11 86086061 86086061 G C CCDC81 5'UTR 0.19 TCGA-A4-7288-01 12 46285793 46285793 G A ARID2 Splice_Site p.X1688_splice 0.91 TCGA-A4-7288-01 12 53685605 53685605 A G ESPL1 Silent p.T1884T 0.90 TCGA-A4-7288-01 12 6649694 6649694 A G IFFO1 Silent p.A549A 0.92 TCGA-A4-7288-01 12 95867845 95867845 C - METAP2 5'UTR 0.78 TCGA-A4-7288-01 13 37539814 37539814 C T ALG5 Nonsense_Mutation p.W224* 0.05 TCGA-A4-7288-01 13 38924005 38924005 C T UFM1 5'Flank 0.35 TCGA-A4-7288-01 14 21679712 21679713 AT - HNRNPC Frame_Shift_Del p.N230Rfs*2 0.52 TCGA-A4-7288-01 14 21931921 21931921 A G RAB2B Missense_Mutation p.L123P 0.42 deleterious(0) probably_damaging(0.996) TCGA-A4-7288-01 14 24568928 24568928 A C PCK2 Missense_Mutation p.E338D 0.26 tolerated(1) benign(0.001) TCGA-A4-7288-01 14 39734534 39734534 G C CTAGE5 5'Flank 0.40 TCGA-A4-7288-01 14 52494036 52494036 C T NID2 Missense_Mutation p.E853K 0.41 tolerated(0.14) benign(0.099) TCGA-A4-7288-01 14 60750192 60750192 A T PPM1A Missense_Mutation p.R330S 0.41 deleterious(0) probably_damaging(0.998) TCGA-A4-7288-01 15 43299483 43299483 C A UBR1 Splice_Site p.X1070_splice 0.39 TCGA-A4-7288-01 15 72556908 72556908 A G PARP6 Missense_Mutation p.L128P 0.04 tolerated_low_confidence(0.27) benign(0.418) TCGA-A4-7288-01 15 90634783 90634783 A G IDH2 Splice_Site p.X69_splice 0.11 TCGA-A4-7288-01 16 22926750 22926750 G A HS3ST2 Missense_Mutation p.R324Q 0.05 deleterious(0.01) possibly_damaging(0.832) TCGA-A4-7288-01 16 31144179 31144179 A G PRSS8 Missense_Mutation p.I121T 0.27 tolerated(0.1) possibly_damaging(0.595) TCGA-A4-7288-01 16 48249161 48249161 A G ABCC11 Missense_Mutation p.I349T 0.30 deleterious(0) probably_damaging(0.99) TCGA-A4-7288-01 16 56701949 56701949 A G MT1G 5'UTR 0.65 TCGA-A4-7288-01 16 677608 677608 T C RAB40C Missense_Mutation p.C278R 0.56 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-A4-7288-01 17 1400005 1400005 G C INPP5K Silent p.T352T 0.54 TCGA-A4-7288-01 17 40048661 40048661 C A ACLY Missense_Mutation p.E547D 0.37 deleterious(0.02) possibly_damaging(0.899) TCGA-A4-7288-01 17 42158172 42158172 C A HDAC5 Missense_Mutation p.D897Y 0.34 deleterious(0) probably_damaging(0.996) TCGA-A4-7288-01 17 43922606 43922611 GGCCAA - SPPL2C In_Frame_Del p.Q113_G114del 0.13 TCGA-A4-7288-01 18 12358734 12358734 T C AFG3L2 Missense_Mutation p.M321V 0.40 deleterious(0) possibly_damaging(0.643) TCGA-A4-7288-01 19 13249116 13249116 A G NACC1 Missense_Mutation p.S494G 0.39 tolerated_low_confidence(0.73) benign(0.001) TCGA-A4-7288-01 19 1468067 1468067 C T APC2 Silent p.P1589P 0.42 TCGA-A4-7288-01 19 19420931 19420931 C T SUGP1 Silent p.K95K 0.44 TCGA-A4-7288-01 19 36232080 36232080 A G IGFLR1 Translation_Start_Site p.M1? 0.36 deleterious(0) benign(0.402) TCGA-A4-7288-01 19 40098063 40098063 C A LGALS13 3'UTR 0.17 TCGA-A4-7288-01 19 41220537 41220537 T C ADCK4 Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-A4-7288-01 1 150936790 150936790 G A SETDB1 Missense_Mutation p.E1276K 0.25 tolerated(1) possibly_damaging(0.541) TCGA-A4-7288-01 1 153752431 153752431 A T SLC27A3 Missense_Mutation p.T716S 0.42 deleterious(0.05) benign(0.406) TCGA-A4-7288-01 1 15957021 15957021 C T DDI2 Missense_Mutation p.P157L 0.36 deleterious(0) probably_damaging(1) TCGA-A4-7288-01 1 200635600 200635600 G C DDX59 Missense_Mutation p.P90R 0.07 deleterious(0.03) probably_damaging(0.98) TCGA-A4-7288-01 1 203274779 203274779 C T BTG2 Silent p.A15A 0.27 TCGA-A4-7288-01 1 24124297 24124297 G T GALE Missense_Mutation p.P139H 0.50 deleterious(0) probably_damaging(1) TCGA-A4-7288-01 1 27250638 27250638 A G NUDC Missense_Mutation p.E47G 0.42 tolerated(0.53) benign(0.009) TCGA-A4-7288-01 1 32667518 32667518 G A CCDC28B 5'UTR 0.38 TCGA-A4-7288-01 1 6305577 6305580 CTAT - HES3 3'UTR 0.37 TCGA-A4-7288-01 1 70877247 70877247 G C CTH Missense_Mutation p.G50A 0.33 tolerated(0.69) benign(0.001) TCGA-A4-7288-01 1 94337674 94337674 C A DNTTIP2 Missense_Mutation p.R674I 0.44 deleterious(0) probably_damaging(0.997) TCGA-A4-7288-01 20 18471080 18471080 G A RBBP9 Missense_Mutation p.A98V 0.36 deleterious(0) probably_damaging(0.996) TCGA-A4-7288-01 20 25201971 25201971 T A ENTPD6 Splice_Site p.X349_splice 0.50 TCGA-A4-7288-01 20 42208647 42208647 A G SGK2 Missense_Mutation p.I355M 0.48 deleterious(0.04) probably_damaging(0.987) TCGA-A4-7288-01 20 44806642 44806642 C T CDH22 Missense_Mutation p.A620T 0.13 tolerated(0.17) benign(0.003) TCGA-A4-7288-01 20 45242414 45242414 G C SLC13A3 Intron 0.55 TCGA-A4-7288-01 22 31655910 31655910 T C LIMK2 Missense_Mutation p.M112T 0.83 tolerated(0.06) benign(0.008) TCGA-A4-7288-01 22 38536176 38536176 G - PLA2G6 Frame_Shift_Del p.L204Sfs*10 0.46 TCGA-A4-7288-01 2 109383218 109383218 A C RANBP2 Missense_Mutation p.M2075L 0.49 deleterious(0) probably_damaging(0.998) TCGA-A4-7288-01 2 152319615 152319615 C A RIF1 Missense_Mutation p.S1194Y 0.22 deleterious(0) possibly_damaging(0.707) TCGA-A4-7288-01 2 185802128 185802128 G C ZNF804A Missense_Mutation p.D669H 0.39 tolerated(0.06) benign(0.085) TCGA-A4-7288-01 2 198001337 198001337 C A ANKRD44 Silent p.R80R 0.47 TCGA-A4-7288-01 3 108703606 108703606 C T MORC1 Missense_Mutation p.V761I 0.35 tolerated(0.39) benign(0.001) TCGA-A4-7288-01 3 145803003 145803003 A T PLOD2 Silent p.V395V 0.40 TCGA-A4-7288-01 3 176767825 176767825 T C TBL1XR1 Missense_Mutation p.D221G 0.52 tolerated(0.11) benign(0.084) TCGA-A4-7288-01 3 185191375 185191375 G A MAP3K13 Silent p.G752G 0.05 TCGA-A4-7288-01 3 186335047 186335047 G A AHSG Missense_Mutation p.V161M 0.51 deleterious(0.02) probably_damaging(0.987) TCGA-A4-7288-01 3 53376261 53376261 G T DCP1A Silent p.R72R 0.60 TCGA-A4-7288-01 4 100470297 100470297 T C TRMT10A Missense_Mutation p.K323R 0.52 tolerated_low_confidence(0.23) benign(0.054) TCGA-A4-7288-01 4 106156045 106156045 T A TET2 Missense_Mutation p.F316I 0.58 tolerated(0.07) benign(0.014) TCGA-A4-7288-01 4 1985129 1985129 C T NELFA Missense_Mutation p.V513M 0.45 deleterious(0) probably_damaging(0.934) TCGA-A4-7288-01 4 47462161 47462163 CTC TT COMMD8 Frame_Shift_Del p.E74Kfs*6 0.34 TCGA-A4-7288-01 4 56847415 56847423 TAAGAAAGG - CEP135 In_Frame_Del p.L550_E553delinsQ 0.34 TCGA-A4-7288-01 4 57204741 57204741 A G AASDH Missense_Mutation p.S1042P 0.44 deleterious(0) probably_damaging(0.979) TCGA-A4-7288-01 5 1064225 1064225 C G SLC12A7 Silent p.L860L 0.45 TCGA-A4-7288-01 5 111500624 111500624 A G EPB41L4A 3'UTR 0.38 TCGA-A4-7288-01 5 35048004 35048004 C T AGXT2 5'UTR 0.53 TCGA-A4-7288-01 5 72192301 72192301 A G TNPO1 Missense_Mutation p.I720M 0.36 tolerated(0.22) benign(0.069) TCGA-A4-7288-01 6 111912700 111912700 G T TRAF3IP2 Missense_Mutation p.T197K 0.10 deleterious(0) probably_damaging(0.975) TCGA-A4-7288-01 6 25701512 25701512 A T SCGN Missense_Mutation p.K260N 0.08 deleterious(0) probably_damaging(1) TCGA-A4-7288-01 7 114268851 114268851 G A FOXP2 Intron 0.11 TCGA-A4-7288-01 7 120629612 120629613 - A CPED1 5'UTR 0.32 TCGA-A4-7288-01 7 148702375 148702375 C T PDIA4 Silent p.G460G 0.03 TCGA-A4-7288-01 7 72416770 72416770 G A POM121 Intron 0.29 TCGA-A4-7288-01 8 109462083 109462083 A G EMC2 Silent p.E24E 0.44 TCGA-A4-7288-01 8 19816813 19816813 G C LPL Missense_Mutation p.S354T 0.40 tolerated(0.14) benign(0.003) TCGA-A4-7288-01 8 38810172 38810172 C A PLEKHA2 Missense_Mutation p.R218S 0.21 deleterious(0) probably_damaging(1) TCGA-A4-7288-01 8 55540098 55540099 - T RP1 Frame_Shift_Ins p.V1220Cfs*3 0.32 TCGA-A4-7288-01 8 90960111 90960111 C T NBN Missense_Mutation p.E619K 0.50 tolerated(0.15) benign(0.02) TCGA-A4-7288-01 9 33385805 33385805 G T AQP7 Missense_Mutation p.N195K 0.32 tolerated(0.13) benign(0.256) TCGA-A4-7288-01 X 117960419 117960419 G A ZCCHC12 3'UTR 0.45 TCGA-A4-7583-01 10 25312238 25312238 C T THNSL1 Missense_Mutation p.A29V 0.40 tolerated_low_confidence(0.55) benign(0) TCGA-A4-7583-01 11 118869166 118869166 C T CCDC84 Silent p.R49R 0.28 TCGA-A4-7583-01 11 76888670 76888670 A T MYO7A Missense_Mutation p.I755F 0.30 deleterious(0.05) benign(0.334) TCGA-A4-7583-01 12 112183962 112183962 T C ACAD10 Silent p.A741A 0.33 TCGA-A4-7583-01 12 27845910 27845910 A G PPFIBP1 3'UTR 0.53 TCGA-A4-7583-01 12 3048537 3048537 A C TULP3 Missense_Mutation p.N419T 0.29 tolerated(0.1) benign(0.081) TCGA-A4-7583-01 13 114523928 114523928 T C GAS6 Missense_Mutation p.N649S 0.47 deleterious(0.04) benign(0.056) TCGA-A4-7583-01 14 23374814 23374814 C G RBM23 Splice_Site p.X152_splice 0.65 TCGA-A4-7583-01 16 18840922 18840922 G T SMG1 Missense_Mutation p.L3097I 0.58 tolerated(0.22) benign(0.22) TCGA-A4-7583-01 16 71317552 71317552 C T CMTR2 Missense_Mutation p.E758K 0.24 tolerated_low_confidence(0.23) benign(0.026) TCGA-A4-7583-01 16 81990321 81990321 T G PLCG2 Missense_Mutation p.S1198A 0.36 tolerated(0.3) benign(0.018) TCGA-A4-7583-01 17 34849806 34849806 A G ZNHIT3 Missense_Mutation p.D81G 0.39 tolerated(0.05) probably_damaging(0.998) TCGA-A4-7583-01 17 48072053 48072053 G C DLX3 Missense_Mutation p.P104A 0.47 tolerated(0.17) benign(0.022) TCGA-A4-7583-01 17 80885835 80885835 G C TBCD Silent p.R888R 0.34 TCGA-A4-7583-01 18 21128030 21128030 G T NPC1 Missense_Mutation p.P566H 0.38 deleterious(0.02) possibly_damaging(0.886) TCGA-A4-7583-01 18 44013351 44013357 CCCTGCA TGCG RNF165 In_Frame_Del p.T87_Q89delinsMR 0.23 TCGA-A4-7583-01 19 1106396 1106396 C G GPX4 Intron 0.15 TCGA-A4-7583-01 19 11216253 11216253 A C LDLR Missense_Mutation p.D224A 0.42 deleterious(0) probably_damaging(0.996) TCGA-A4-7583-01 19 16339616 16339616 C G AP1M1 Missense_Mutation p.N320K 0.34 deleterious(0.03) probably_damaging(0.96) TCGA-A4-7583-01 19 18254602 18254603 - CT MAST3 Frame_Shift_Ins p.C762Sfs*18 0.24 TCGA-A4-7583-01 19 18731405 18731405 G A TMEM59L 3'UTR 0.43 TCGA-A4-7583-01 19 39868382 39868391 TCCCACTGAT - SAMD4B Frame_Shift_Del p.P455Afs*21 0.32 TCGA-A4-7583-01 19 46443735 46443735 A G NOVA2 Missense_Mutation p.Y289H 0.17 deleterious(0) benign(0.018) TCGA-A4-7583-01 1 154574741 154574741 A G ADAR Missense_Mutation p.L126P 0.55 deleterious(0) possibly_damaging(0.707) TCGA-A4-7583-01 1 156715103 156715104 - A HDGF Frame_Shift_Ins p.G67Rfs*63 0.61 TCGA-A4-7583-01 1 6211114 6211114 C A CHD5 Missense_Mutation p.K324N 0.08 deleterious(0.04) benign(0.01) TCGA-A4-7583-01 1 86890015 86890015 C T CLCA2 Silent p.L29L 0.62 TCGA-A4-7583-01 20 3102965 3102965 G A UBOX5 Missense_Mutation p.P107L 0.29 tolerated(0.18) benign(0.008) TCGA-A4-7583-01 20 31604905 31604906 - T BPIFB2 Frame_Shift_Ins p.G193Wfs*8 0.25 TCGA-A4-7583-01 20 7886831 7886832 - TTT HAO1 In_Frame_Ins p.S230_L231insK 0.32 TCGA-A4-7583-01 21 37418117 37418117 T C SETD4 Silent p.R163R 0.44 TCGA-A4-7583-01 21 44841223 44841223 T C SIK1 Missense_Mutation p.K175R 0.36 tolerated(0.05) benign(0.423) TCGA-A4-7583-01 21 46911142 46911142 G A COL18A1 Missense_Mutation p.D871N 0.34 benign(0.13) TCGA-A4-7583-01 21 46911143 46911143 A T COL18A1 Missense_Mutation p.D871V 0.35 possibly_damaging(0.907) TCGA-A4-7583-01 22 38352853 38352853 A C POLR2F Intron 0.39 TCGA-A4-7583-01 22 45312440 45312440 G T PHF21B Missense_Mutation p.P95H 0.37 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-A4-7583-01 2 171806790 171806790 T C GORASP2 Missense_Mutation p.V142A 0.40 tolerated(0.05) possibly_damaging(0.54) TCGA-A4-7583-01 2 179411556 179411556 A G TTN Silent p.D31533D 0.50 TCGA-A4-7583-01 2 200193570 200193570 C A SATB2 Missense_Mutation p.V413L 0.22 deleterious(0) probably_damaging(0.965) TCGA-A4-7583-01 2 203155146 203155146 T C NOP58 Silent p.D200D 0.41 TCGA-A4-7583-01 2 73471795 73471795 G T CCT7 Silent p.L190L 0.29 TCGA-A4-7583-01 2 73471796 73471796 C T CCT7 Nonsense_Mutation p.Q191* 0.30 TCGA-A4-7583-01 2 90121923 90121923 G A IGKV1D-17 Silent p.A47A 0.14 TCGA-A4-7583-01 3 123010068 123010068 C T ADCY5 Missense_Mutation p.M1073I 0.32 deleterious(0.04) probably_damaging(0.937) TCGA-A4-7583-01 3 137742626 137742626 A T CLDN18 Missense_Mutation p.N116I 0.32 deleterious(0.02) benign(0.367) TCGA-A4-7583-01 3 185209397 185209397 T A TMEM41A Missense_Mutation p.K241N 0.41 tolerated(0.09) benign(0.016) TCGA-A4-7583-01 3 52588791 52588791 G T PBRM1 Missense_Mutation p.P1413T 0.46 tolerated(0.16) possibly_damaging(0.803) TCGA-A4-7583-01 4 114434488 114434488 G A CAMK2D Silent p.F314F 0.37 TCGA-A4-7583-01 4 15989284 15989287 ACCA - PROM1 Splice_Site p.X710_splice 0.35 TCGA-A4-7583-01 4 187004092 187004092 A C TLR3 Missense_Mutation p.K418Q 0.32 tolerated(0.37) benign(0.003) TCGA-A4-7583-01 4 87749228 87749228 G C SLC10A6 Missense_Mutation p.L227V 0.32 tolerated(0.09) probably_damaging(0.972) TCGA-A4-7583-01 5 32403408 32403408 G A ZFR Missense_Mutation p.S440L 0.44 tolerated(0.05) unknown(0) TCGA-A4-7583-01 5 67576767 67576767 T G PIK3R1 Silent p.T283T 0.29 TCGA-A4-7583-01 5 78975410 78975410 G C PAPD4 Missense_Mutation p.S406T 0.43 tolerated(0.37) benign(0.002) TCGA-A4-7583-01 6 110746234 110746234 C A SLC22A16 Nonsense_Mutation p.E526* 0.34 TCGA-A4-7583-01 6 31922209 31922209 T C NELFE Silent p.S251S 0.36 TCGA-A4-7583-01 6 66204808 66204808 T G EYS Missense_Mutation p.N166H 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-A4-7583-01 7 13971323 13971323 C G ETV1 Silent p.T202T 0.39 TCGA-A4-7583-01 7 48035693 48035693 C T SUN3 Missense_Mutation p.A210T 0.33 tolerated(0.12) benign(0.091) TCGA-A4-7583-01 7 92151473 92151473 A G PEX1 Silent p.N72N 0.42 TCGA-A4-7583-01 8 15508312 15508312 G A TUSC3 Missense_Mutation p.V139I 0.42 tolerated(0.32) benign(0.08) TCGA-A4-7583-01 8 18430149 18430149 T A PSD3 Missense_Mutation p.K891N 0.33 deleterious(0) possibly_damaging(0.906) TCGA-A4-7583-01 8 23540296 23540296 C T NKX3-1 Missense_Mutation p.R36Q 0.18 tolerated(0.19) possibly_damaging(0.559) TCGA-A4-7583-01 8 27168425 27168425 G T TRIM35 Missense_Mutation p.L110I 0.35 deleterious(0.02) benign(0.403) TCGA-A4-7583-01 8 28206721 28206721 T C ZNF395 Missense_Mutation p.S451G 0.33 tolerated(0.52) benign(0.034) TCGA-A4-7583-01 9 100840514 100840514 A G NANS Missense_Mutation p.D163G 0.37 tolerated(0.2) benign(0.003) TCGA-A4-7583-01 9 131708944 131708945 - G DOLK Frame_Shift_Ins p.T214Dfs*142 0.29 TCGA-A4-7583-01 9 34622092 34622092 C T ARID3C Missense_Mutation p.G355R 0.34 tolerated(0.11) possibly_damaging(0.529) TCGA-A4-7583-01 9 35547391 35547391 G C RUSC2 Missense_Mutation p.M291I 0.31 deleterious(0) benign(0.05) TCGA-A4-7583-01 X 86773063 86773063 C G KLHL4 Missense_Mutation p.S56C 0.83 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-A4-7584-01 10 104436547 104436547 A C ARL3 3'UTR 0.27 TCGA-A4-7584-01 10 5139704 5139704 G C AKR1C3 Missense_Mutation p.V111L 0.44 tolerated(0.08) benign(0.041) TCGA-A4-7584-01 10 71175766 71175766 A T TACR2 Missense_Mutation p.F105Y 0.41 tolerated(1) benign(0.03) TCGA-A4-7584-01 11 102987369 102987369 T C DYNC2H1 Missense_Mutation p.V231A 0.44 benign(0.023) TCGA-A4-7584-01 11 111749725 111749725 A G FDXACB1 Silent p.D44D 0.36 TCGA-A4-7584-01 11 30902745 30902745 G T DCDC1 Silent p.V1728V 0.46 TCGA-A4-7584-01 11 6703594 6703594 G A MRPL17 Missense_Mutation p.P95S 0.34 deleterious(0) probably_damaging(0.997) TCGA-A4-7584-01 12 105527569 105527569 C G KIAA1033 Silent p.V407V 0.25 TCGA-A4-7584-01 12 123429030 123429030 A - ABCB9 Frame_Shift_Del p.Y430Tfs*11 0.24 TCGA-A4-7584-01 12 12483592 12483592 T - MANSC1 Frame_Shift_Del p.N222Mfs*2 0.27 TCGA-A4-7584-01 12 14772233 14772233 A C GUCY2C Silent p.A929A 0.33 TCGA-A4-7584-01 12 41316146 41316146 C T CNTN1 Nonsense_Mutation p.Q106* 0.43 TCGA-A4-7584-01 12 57975209 57975209 C T KIF5A Missense_Mutation p.R923W 0.41 deleterious(0) possibly_damaging(0.828) TCGA-A4-7584-01 12 78604234 78604234 C T NAV3 Silent p.C2343C 0.37 TCGA-A4-7584-01 13 45768535 45768535 G A KCTD4 Silent p.D56D 0.31 TCGA-A4-7584-01 14 50256253 50256253 C T NEMF Silent p.Q886Q 0.28 TCGA-A4-7584-01 14 64916030 64916030 A G MTHFD1 Intron 0.80 TCGA-A4-7584-01 14 97321567 97321567 T A VRK1 Missense_Mutation p.L195M 0.43 deleterious(0) probably_damaging(1) TCGA-A4-7584-01 15 41037304 41037305 - GCACT RMDN3 Frame_Shift_Ins p.L227Vfs*70 0.40 TCGA-A4-7584-01 15 45453182 45453182 C - DUOX1 Frame_Shift_Del p.S1285Qfs*3 0.31 TCGA-A4-7584-01 15 45456067 45456067 G T DUOX1 Missense_Mutation p.R1495L 0.41 deleterious(0) probably_damaging(0.998) TCGA-A4-7584-01 15 45456068 45456068 T A DUOX1 Silent p.R1495R 0.42 TCGA-A4-7584-01 15 64791991 64791991 T C ZNF609 Missense_Mutation p.S125P 0.27 tolerated(0.36) benign(0.009) TCGA-A4-7584-01 16 10721483 10721483 C T TEKT5 Missense_Mutation p.R472H 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-A4-7584-01 16 1505793 1505793 C T CLCN7 Missense_Mutation p.G307E 0.57 deleterious(0) probably_damaging(0.996) TCGA-A4-7584-01 16 56716449 56716449 C T MT1X 5'UTR 0.54 TCGA-A4-7584-01 16 57463170 57463170 C T CIAPIN1 Missense_Mutation p.R284H 0.53 deleterious(0) probably_damaging(0.997) TCGA-A4-7584-01 17 28407885 28407885 G C EFCAB5 Silent p.L1104L 0.36 TCGA-A4-7584-01 17 29621957 29621957 G T OMG 3'UTR 0.52 TCGA-A4-7584-01 17 39622089 39622090 - C KRT32 Frame_Shift_Ins p.D215Gfs*7 0.37 TCGA-A4-7584-01 17 65214853 65214853 T G HELZ Missense_Mutation p.E23A 0.24 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-A4-7584-01 17 71199203 71199203 C A COG1 Missense_Mutation p.A713D 0.65 deleterious(0) probably_damaging(0.999) TCGA-A4-7584-01 17 72861043 72861043 A C FDXR Missense_Mutation p.I250S 0.52 deleterious(0) probably_damaging(0.983) TCGA-A4-7584-01 17 73752854 73752855 - GCTGCA ITGB4 In_Frame_Ins p.Q1658_L1659dup 0.25 TCGA-A4-7584-01 17 7727461 7727461 G A DNAH2 Missense_Mutation p.R3834Q 0.14 possibly_damaging(0.842) TCGA-A4-7584-01 18 23670482 23670482 G A SS18 Missense_Mutation p.P18S 0.33 tolerated(0.68) benign(0.192) TCGA-A4-7584-01 18 23670483 23670483 A G SS18 Silent p.T17T 0.33 TCGA-A4-7584-01 18 2913257 2913257 G T EMILIN2 Missense_Mutation p.G1006V 0.28 deleterious(0.05) probably_damaging(1) TCGA-A4-7584-01 18 30926327 30926327 T C CCDC178 Missense_Mutation p.E169G 0.32 deleterious(0) probably_damaging(0.969) TCGA-A4-7584-01 19 13996869 13996869 C G C19orf57 Splice_Site p.X557_splice 0.37 TCGA-A4-7584-01 19 35828752 35828752 C T CD22 Silent p.N271N 0.43 TCGA-A4-7584-01 19 45720794 45720794 G - EXOC3L2 Frame_Shift_Del p.R271Gfs*132 0.35 TCGA-A4-7584-01 19 50161552 50161552 A C SCAF1 Missense_Mutation p.K1279Q 0.47 probably_damaging(0.991) TCGA-A4-7584-01 19 55144006 55144006 C A LILRB1 Silent p.G251G 0.40 TCGA-A4-7584-01 19 57839968 57839968 G A ZNF543 Missense_Mutation p.A380T 0.41 tolerated(0.43) benign(0.02) TCGA-A4-7584-01 19 9059472 9059472 G T MUC16 Missense_Mutation p.A9325D 0.50 unknown(0) TCGA-A4-7584-01 19 9271676 9271676 G A ZNF317 Missense_Mutation p.G452E 0.34 deleterious(0.03) benign(0.134) TCGA-A4-7584-01 1 1248497 1248497 A G CPSF3L Missense_Mutation p.M356T 0.36 deleterious(0) possibly_damaging(0.848) TCGA-A4-7584-01 1 145497429 145497430 - T LIX1L Frame_Shift_Ins p.G213Wfs*35 0.25 TCGA-A4-7584-01 1 183944269 183944269 G C COLGALT2 Missense_Mutation p.L152V 0.35 deleterious(0) possibly_damaging(0.883) TCGA-A4-7584-01 1 186083139 186083139 G A HMCN1 Silent p.Q3720Q 0.34 TCGA-A4-7584-01 1 24121145 24121145 C A LYPLA2 Intron 0.39 TCGA-A4-7584-01 1 2430213 2430213 A G PLCH2 Missense_Mutation p.I767V 0.48 deleterious(0.03) probably_damaging(0.967) TCGA-A4-7584-01 1 34329977 34329977 C T HMGB4 Missense_Mutation p.A62V 0.40 tolerated(0.06) benign(0.06) TCGA-A4-7584-01 1 35658464 35658464 G T SFPQ Missense_Mutation p.P63T 0.27 deleterious_low_confidence(0) unknown(0) TCGA-A4-7584-01 1 54870254 54870254 C T SSBP3 Nonsense_Mutation p.W62* 0.30 TCGA-A4-7584-01 1 70876978 70876978 C A CTH 5'UTR 0.50 TCGA-A4-7584-01 20 34021936 34021936 G T GDF5 Missense_Mutation p.A426D 0.38 deleterious(0) probably_damaging(1) TCGA-A4-7584-01 20 44578919 44578919 G C ZNF335 Silent p.T1142T 0.29 TCGA-A4-7584-01 20 49366295 49366295 A G PARD6B Missense_Mutation p.H130R 0.32 tolerated(0.2) benign(0.002) TCGA-A4-7584-01 22 30951203 30951203 C G GAL3ST1 Missense_Mutation p.A337P 0.48 deleterious(0.01) possibly_damaging(0.794) TCGA-A4-7584-01 22 37914027 37914027 G C CARD10 Missense_Mutation p.F108L 0.22 deleterious(0) benign(0.347) TCGA-A4-7584-01 2 109109239 109109239 C T GCC2 Silent p.T1480T 0.46 TCGA-A4-7584-01 2 179611391 179611391 G C TTN Intron 0.45 TCGA-A4-7584-01 2 207040930 207040930 G A GPR1 Silent p.L348L 0.39 TCGA-A4-7584-01 2 223436519 223436519 G A FARSB 3'UTR 0.56 TCGA-A4-7584-01 2 238722326 238722326 G T RBM44 Splice_Site p.X26_splice 0.52 TCGA-A4-7584-01 2 29287658 29287658 T A C2orf71 3'UTR 0.39 TCGA-A4-7584-01 3 101520832 101520832 A T NXPE3 Missense_Mutation p.S283C 0.37 deleterious(0.03) probably_damaging(0.968) TCGA-A4-7584-01 3 183898969 183898969 T C AP2M1 Missense_Mutation p.V221A 0.44 tolerated(0.09) benign(0.198) TCGA-A4-7584-01 3 51697207 51697207 C G RAD54L2 Missense_Mutation p.S1392C 0.39 tolerated_low_confidence(0.06) possibly_damaging(0.695) TCGA-A4-7584-01 3 69928532 69928532 A T MITF Nonsense_Mutation p.K118* 0.52 TCGA-A4-7584-01 4 155465648 155465648 T C PLRG1 Silent p.K181K 0.39 TCGA-A4-7584-01 4 54266007 54266007 G C FIP1L1 Splice_Site p.X272_splice 0.41 TCGA-A4-7584-01 4 95220547 95220547 A G HPGDS 3'UTR 0.37 TCGA-A4-7584-01 5 156590018 156590018 G C FAM71B Missense_Mutation p.P420A 0.47 tolerated(0.5) benign(0.007) TCGA-A4-7584-01 5 179229176 179229176 C G MGAT4B 5'UTR 0.40 TCGA-A4-7584-01 5 39285241 39285241 G T C9 3'UTR 0.41 TCGA-A4-7584-01 5 95761622 95761622 C G PCSK1 Missense_Mutation p.E100Q 0.37 tolerated(0.39) probably_damaging(0.974) TCGA-A4-7584-01 6 110734538 110734538 G A DDO Missense_Mutation p.T71I 0.43 deleterious(0) probably_damaging(1) TCGA-A4-7584-01 6 152631610 152631610 G A SYNE1 Missense_Mutation p.A5647V 0.38 probably_damaging(0.971) TCGA-A4-7584-01 6 30615105 30615105 A G C6orf136 Missense_Mutation p.R33G 0.22 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-A4-7584-01 6 33543199 33543199 G A BAK1 Missense_Mutation p.R76W 0.06 deleterious(0) probably_damaging(0.986) TCGA-A4-7584-01 6 36455047 36455048 - C KCTD20 3'UTR 0.28 TCGA-A4-7584-01 6 69666026 69666027 - A BAI3 Frame_Shift_Ins p.C437Mfs*13 0.30 TCGA-A4-7584-01 7 134871027 134871027 A T WDR91 Missense_Mutation p.L707Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-A4-7584-01 7 16650259 16650259 T C ANKMY2 Missense_Mutation p.K221E 0.44 deleterious(0.03) possibly_damaging(0.728) TCGA-A4-7584-01 7 16650260 16650260 C T ANKMY2 Missense_Mutation p.M220I 0.43 tolerated(0.13) benign(0.003) TCGA-A4-7584-01 7 44073912 44073912 T C RASA4CP Splice_Site 0.62 TCGA-A4-7584-01 7 5568977 5568977 T C ACTB Missense_Mutation p.S60G 0.55 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-A4-7584-01 7 82584714 82584714 T A PCLO Missense_Mutation p.H1852L 0.32 unknown(0) TCGA-A4-7584-01 8 132968018 132968018 C T EFR3A Silent p.R214R 0.30 TCGA-A4-7584-01 9 132623219 132623219 T C USP20 Missense_Mutation p.S112P 0.32 tolerated(0.38) benign(0.007) TCGA-A4-7584-01 X 44870257 44870257 T - KDM6A Frame_Shift_Del p.Q147Sfs*33 0.37 TCGA-A4-7585-01 10 103898442 103898442 A - PPRC1 Frame_Shift_Del p.N137Mfs*79 0.15 TCGA-A4-7585-01 10 124273843 124273843 A T HTRA1 Missense_Mutation p.I471F 0.20 tolerated(0.65) benign(0.274) TCGA-A4-7585-01 11 120980039 120980039 A - TECTA Frame_Shift_Del p.I107Ffs*16 0.20 TCGA-A4-7585-01 11 72399555 72399555 T - ARAP1 Frame_Shift_Del p.I1339Lfs*10 0.19 TCGA-A4-7585-01 12 120599294 120599294 C T GCN1L1 Silent p.E812E 0.08 TCGA-A4-7585-01 12 41327590 41327590 A C CNTN1 Missense_Mutation p.N299H 0.18 deleterious(0) probably_damaging(0.995) TCGA-A4-7585-01 12 45567881 45567881 G T PLEKHA8P1 RNA 0.23 TCGA-A4-7585-01 12 49390496 49390496 G - DDN 3'UTR 0.13 TCGA-A4-7585-01 12 53097170 53097170 G T KRT77 Silent p.R17R 0.25 TCGA-A4-7585-01 12 57499083 57499083 C A STAT6 Missense_Mutation p.K284N 0.17 deleterious(0) possibly_damaging(0.87) TCGA-A4-7585-01 12 7076752 7076752 C T PHB2 Intron 0.17 TCGA-A4-7585-01 14 22772431 22772431 C T TRAV39 Silent p.A108A 0.24 TCGA-A4-7585-01 14 35871629 35871629 A T NFKBIA Missense_Mutation p.S293T 0.17 tolerated(0.28) benign(0.016) TCGA-A4-7585-01 14 69866098 69866098 C T SLC39A9 Silent p.F4F 0.27 TCGA-A4-7585-01 15 25953155 25953155 G A ATP10A Missense_Mutation p.A848V 0.06 deleterious(0) possibly_damaging(0.506) TCGA-A4-7585-01 15 45561728 45561728 A C SLC28A2 Missense_Mutation p.I521L 0.17 tolerated(0.07) possibly_damaging(0.566) TCGA-A4-7585-01 15 65295424 65295424 A C MTFMT Silent p.V382V 0.14 TCGA-A4-7585-01 15 65888068 65888068 C G VWA9 Intron 0.14 TCGA-A4-7585-01 15 76484312 76484312 G A C15orf27 Missense_Mutation p.E258K 0.17 deleterious(0.03) benign(0.342) TCGA-A4-7585-01 15 90349269 90349269 G C ANPEP Missense_Mutation p.F182L 0.03 deleterious(0.01) probably_damaging(0.997) TCGA-A4-7585-01 16 10992818 10992818 T C CIITA Missense_Mutation p.M132T 0.11 tolerated(0.71) benign(0.003) TCGA-A4-7585-01 16 48230229 48230229 G A ABCC11 Missense_Mutation p.P773L 0.06 tolerated(0.62) benign(0.003) TCGA-A4-7585-01 16 55359000 55359000 C A IRX6 5'UTR 0.14 TCGA-A4-7585-01 16 71956520 71956520 G T IST1 Missense_Mutation p.M245I 0.21 tolerated(0.38) benign(0.025) TCGA-A4-7585-01 16 81411103 81411103 C T GAN Missense_Mutation p.R566C 0.14 deleterious(0.03) possibly_damaging(0.732) TCGA-A4-7585-01 16 84158328 84158328 A C HSDL1 Silent p.L300L 0.19 TCGA-A4-7585-01 17 33464163 33464163 G A NLE1 Missense_Mutation p.R229W 0.05 deleterious(0) probably_damaging(0.991) TCGA-A4-7585-01 17 39726126 39726126 C A KRT9 Missense_Mutation p.K289N 0.21 deleterious(0.01) benign(0.299) TCGA-A4-7585-01 17 48692731 48692732 GC - CACNA1G Frame_Shift_Del p.C1590* 0.17 TCGA-A4-7585-01 17 58740446 58740446 G T PPM1D Nonsense_Mutation p.E451* 0.30 TCGA-A4-7585-01 17 67304486 67304486 C G ABCA5 Missense_Mutation p.A165P 0.13 tolerated(0.15) probably_damaging(0.984) TCGA-A4-7585-01 17 78085893 78085894 CC - GAA Frame_Shift_Del p.H584Qfs*51 0.19 TCGA-A4-7585-01 19 23926507 23926507 C G ZNF681 Missense_Mutation p.E615D 0.16 tolerated(0.06) benign(0.001) TCGA-A4-7585-01 19 5231542 5231542 T A PTPRS Missense_Mutation p.E645V 0.19 tolerated(0.08) benign(0.036) TCGA-A4-7585-01 1 150259000 150259000 T A C1orf51 Silent p.T264T 0.20 TCGA-A4-7585-01 1 153924520 153924520 C A CRTC2 Missense_Mutation p.G324V 0.13 deleterious(0.01) benign(0.305) TCGA-A4-7585-01 1 162344114 162344114 T C C1orf111 Silent p.L170L 0.16 TCGA-A4-7585-01 1 190067269 190067269 A T BRINP3 Nonsense_Mutation p.L727* 0.11 TCGA-A4-7585-01 1 198704382 198704382 G A PTPRC Splice_Site p.X801_splice 0.12 TCGA-A4-7585-01 1 229771589 229771589 G A URB2 Missense_Mutation p.R410H 0.04 deleterious(0) probably_damaging(0.998) TCGA-A4-7585-01 1 26149567 26149567 T A MTFR1L 5'UTR 0.14 TCGA-A4-7585-01 1 32207416 32207416 C A BAI2 Nonsense_Mutation p.E524* 0.14 TCGA-A4-7585-01 1 45808095 45808095 C G TOE1 Missense_Mutation p.L178V 0.16 tolerated(0.17) benign(0.444) TCGA-A4-7585-01 1 46086774 46086774 G T CCDC17 Nonsense_Mutation p.S467* 0.14 TCGA-A4-7585-01 1 82456455 82456455 C G LPHN2 Missense_Mutation p.L1280V 0.27 tolerated_low_confidence(0.21) probably_damaging(0.999) TCGA-A4-7585-01 20 4855238 4855238 A T SLC23A2 Missense_Mutation p.L310Q 0.16 deleterious(0) possibly_damaging(0.899) TCGA-A4-7585-01 20 60901783 60901783 C T LAMA5 Missense_Mutation p.A1750T 0.06 benign(0.123) TCGA-A4-7585-01 21 35239577 35239577 C A ITSN1 Missense_Mutation p.S1372Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-A4-7585-01 22 26423002 26423002 C G MYO18B Silent p.L2354L 0.24 TCGA-A4-7585-01 22 46653660 46653660 T G PKDREJ Missense_Mutation p.N1854H 0.24 tolerated(0.2) benign(0.011) TCGA-A4-7585-01 22 50878437 50878437 G T PPP6R2 Missense_Mutation p.S752I 0.20 deleterious(0.01) possibly_damaging(0.455) TCGA-A4-7585-01 2 10016047 10016047 G C TAF1B Missense_Mutation p.E203Q 0.19 tolerated(0.45) benign(0.157) TCGA-A4-7585-01 2 136566494 136566494 T - LCT Frame_Shift_Del p.A1142Pfs*27 0.12 TCGA-A4-7585-01 2 136736937 136736937 C A DARS Splice_Site p.X42_splice 0.20 TCGA-A4-7585-01 2 138169186 138169186 C A THSD7B Missense_Mutation p.S901R 0.13 deleterious(0) possibly_damaging(0.504) TCGA-A4-7585-01 2 149835496 149835496 C T KIF5C Nonsense_Mutation p.Q452* 0.27 TCGA-A4-7585-01 2 220161767 220161767 A C PTPRN Missense_Mutation p.C726G 0.29 deleterious(0) possibly_damaging(0.672) TCGA-A4-7585-01 2 238275884 238275884 T C COL6A3 Missense_Mutation p.N1649S 0.14 probably_damaging(0.961) TCGA-A4-7585-01 2 27460276 27460276 G A CAD Missense_Mutation p.E1476K 0.16 tolerated(0.06) probably_damaging(0.936) TCGA-A4-7585-01 2 99720473 99720473 C A TSGA10 Nonsense_Mutation p.E190* 0.12 TCGA-A4-7585-01 3 15262464 15262464 C T CAPN7 Missense_Mutation p.T205I 0.24 deleterious(0) probably_damaging(0.946) TCGA-A4-7585-01 3 184700420 184700420 C T VPS8 Missense_Mutation p.H1163Y 0.16 tolerated(0.22) benign(0) TCGA-A4-7585-01 3 45048921 45048921 C T EXOSC7 Missense_Mutation p.R209W 0.32 deleterious(0.04) benign(0.23) TCGA-A4-7585-01 3 48508760 48508760 A T TREX1 Missense_Mutation p.T291S 0.12 tolerated_low_confidence(0.06) benign(0.121) TCGA-A4-7585-01 3 51752144 51752144 G A GRM2 3'UTR 0.18 TCGA-A4-7585-01 3 71591191 71591191 A G MIR1284 RNA 0.07 TCGA-A4-7585-01 3 9512542 9512542 T C SETD5 Silent p.L1042L 0.17 TCGA-A4-7585-01 4 123156097 123156097 G T KIAA1109 Nonsense_Mutation p.E1165* 0.23 TCGA-A4-7585-01 4 138452043 138452043 A - PCDH18 Frame_Shift_Del p.H400Qfs*17 0.14 TCGA-A4-7585-01 4 89042889 89042889 A C ABCG2 Missense_Mutation p.I196R 0.15 deleterious(0) probably_damaging(0.999) TCGA-A4-7585-01 5 133997149 133997160 CTCACAAACAAA - SEC24A In_Frame_Del p.S147_N150del 0.20 TCGA-A4-7585-01 5 150701645 150701645 A T SLC36A2 Missense_Mutation p.L381Q 0.21 deleterious(0.03) possibly_damaging(0.866) TCGA-A4-7585-01 5 169463529 169463529 A G DOCK2 Missense_Mutation p.K1212R 0.28 tolerated(0.06) benign(0.036) TCGA-A4-7585-01 5 176696648 176696648 C T NSD1 Silent p.N1783N 0.16 TCGA-A4-7585-01 5 67593499 67593499 C A PIK3R1 3'UTR 0.15 TCGA-A4-7585-01 5 7867621 7867621 A G FASTKD3 Silent p.P192P 0.13 TCGA-A4-7585-01 5 94994451 94994451 C G SPATA9 Missense_Mutation p.R214T 0.16 tolerated(0.18) possibly_damaging(0.603) TCGA-A4-7585-01 6 146234630 146234630 C G SHPRH Missense_Mutation p.R1437P 0.20 deleterious(0.02) possibly_damaging(0.763) TCGA-A4-7585-01 6 161027563 161027563 C T LPA Missense_Mutation p.V911I 0.04 tolerated(0.55) probably_damaging(0.952) TCGA-A4-7585-01 6 16327407 16327407 G A ATXN1 Missense_Mutation p.R379W 0.24 deleterious(0) probably_damaging(0.994) TCGA-A4-7585-01 6 3850443 3850443 C T FAM50B Missense_Mutation p.A133V 0.15 tolerated(0.29) benign(0.005) TCGA-A4-7585-01 6 42796705 42796705 C G GLTSCR1L Missense_Mutation p.Q212E 0.16 tolerated(0.13) possibly_damaging(0.897) TCGA-A4-7585-01 6 43023646 43023646 A C MRPL2 Missense_Mutation p.I207S 0.23 tolerated(0.06) possibly_damaging(0.672) TCGA-A4-7585-01 6 76412443 76412443 G A SENP6 Missense_Mutation p.A791T 0.17 tolerated(0.41) benign(0.004) TCGA-A4-7585-01 7 103629656 103629656 C T RELN Missense_Mutation p.G50R 0.17 deleterious(0) possibly_damaging(0.856) TCGA-A4-7585-01 7 138602635 138602635 C T KIAA1549 Silent p.P579P 0.20 TCGA-A4-7585-01 7 36396613 36396613 G A KIAA0895 Silent p.F255F 0.13 TCGA-A4-7585-01 7 38783049 38783049 T A VPS41 Missense_Mutation p.D692V 0.05 deleterious(0) probably_damaging(0.999) TCGA-A4-7585-01 7 43918082 43918082 A C URGCP Missense_Mutation p.I327S 0.22 deleterious(0.01) benign(0.264) TCGA-A4-7585-01 7 48315672 48315672 G A ABCA13 Missense_Mutation p.D2137N 0.17 benign(0.012) TCGA-A4-7585-01 7 48317816 48317817 - T ABCA13 Frame_Shift_Ins p.S2343Ffs*12 0.31 TCGA-A4-7585-01 7 64126630 64126630 T G ZNF107 5'UTR 0.18 TCGA-A4-7585-01 8 122641473 122641473 A T HAS2 Missense_Mutation p.F36L 0.18 tolerated(1) benign(0.071) TCGA-A4-7585-01 8 42213041 42213041 A - POLB Frame_Shift_Del p.N128Mfs*5 0.11 TCGA-A4-7585-01 9 129595385 129595385 G T ZBTB43 Silent p.S199S 0.09 TCGA-A4-7585-01 9 137734002 137734002 G C COL5A1 Splice_Site p.X1791_splice 0.13 TCGA-A4-7585-01 9 18474176 18474176 G A ADAMTSL1 5'UTR 0.21 TCGA-A4-7585-01 9 79520903 79520903 C G PRUNE2 5'UTR 0.21 TCGA-A4-7585-01 X 23411958 23411959 - G PTCHD1 Frame_Shift_Ins p.F775Cfs*11 0.31 TCGA-A4-7585-01 X 53442034 53442036 ATC - SMC1A In_Frame_Del p.I65del 0.35 TCGA-A4-7732-01 10 103900396 103900396 G A PPRC1 Missense_Mutation p.V711M 0.09 deleterious_low_confidence(0.01) benign(0.01) TCGA-A4-7732-01 10 20357165 20357165 G A PLXDC2 Missense_Mutation p.G180R 0.15 deleterious(0.03) benign(0.165) TCGA-A4-7732-01 10 287963 287963 A G ZMYND11 Missense_Mutation p.I278M 0.35 tolerated(0.07) possibly_damaging(0.756) TCGA-A4-7732-01 11 113705056 113705056 G C USP28 Missense_Mutation p.S179C 0.55 deleterious(0) probably_damaging(1) TCGA-A4-7732-01 11 118969112 118969112 C T DPAGT1 Splice_Site p.X243_splice 0.48 TCGA-A4-7732-01 11 26743059 26743059 A G SLC5A12 Missense_Mutation p.L68P 0.44 deleterious(0) probably_damaging(0.992) TCGA-A4-7732-01 11 57177469 57177469 T G SLC43A3 Missense_Mutation p.I396L 0.33 deleterious(0.01) benign(0.201) TCGA-A4-7732-01 12 51495806 51495806 C T TFCP2 Missense_Mutation p.A355T 0.23 tolerated(0.17) benign(0.045) TCGA-A4-7732-01 12 56626598 56626598 A G SLC39A5 Missense_Mutation p.D138G 0.38 tolerated(0.44) benign(0.002) TCGA-A4-7732-01 12 57864354 57864354 C T GLI1 Missense_Mutation p.R611W 0.36 deleterious(0) benign(0.006) TCGA-A4-7732-01 12 6804566 6804566 G A PIANP Intron 0.39 TCGA-A4-7732-01 14 102910132 102910132 G A TECPR2 Silent p.P967P 0.08 TCGA-A4-7732-01 14 39514526 39514526 A - SEC23A Frame_Shift_Del p.F580Lfs*5 0.26 TCGA-A4-7732-01 14 47351354 47351354 G T MDGA2 Missense_Mutation p.T770K 0.27 deleterious(0.01) possibly_damaging(0.81) TCGA-A4-7732-01 15 65625620 65625620 C T IGDCC3 Silent p.T319T 0.40 TCGA-A4-7732-01 16 15159184 15159184 T C RRN3 Missense_Mutation p.N533S 0.18 deleterious(0.02) benign(0.013) TCGA-A4-7732-01 16 2868950 2868950 G T PRSS21 Missense_Mutation p.G177V 0.11 deleterious(0) probably_damaging(1) TCGA-A4-7732-01 16 68909060 68909060 G T TANGO6 Missense_Mutation p.G333V 0.42 deleterious(0) probably_damaging(0.998) TCGA-A4-7732-01 16 85112653 85112653 G C KIAA0513 Intron 0.50 TCGA-A4-7732-01 17 11772554 11772554 C T DNAH9 Missense_Mutation p.S3346F 0.30 benign(0.049) TCGA-A4-7732-01 17 73096278 73096278 G T SLC16A5 Missense_Mutation p.V174F 0.09 deleterious(0) probably_damaging(0.914) TCGA-A4-7732-01 18 57103120 57103120 C T CCBE1 3'UTR 0.38 TCGA-A4-7732-01 19 11978986 11978986 T C ZNF439 Missense_Mutation p.S368P 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-A4-7732-01 19 44680650 44680650 T - ZNF226 Frame_Shift_Del p.H413Ifs*74 0.24 TCGA-A4-7732-01 19 47987312 47987312 C T KPTN Missense_Mutation p.G36S 0.41 tolerated(0.39) benign(0.007) TCGA-A4-7732-01 19 55176288 55176288 G A LILRB4 Missense_Mutation p.V232I 0.15 tolerated(0.71) benign(0) TCGA-A4-7732-01 19 9088433 9088433 C T MUC16 Missense_Mutation p.A1128T 0.07 unknown(0) TCGA-A4-7732-01 1 114402065 114402065 A G PTPN22 Silent p.S35S 0.46 TCGA-A4-7732-01 1 152382377 152382391 TCAGGGTTGCTCACT - CRNN In_Frame_Del p.V390_E394del 0.32 TCGA-A4-7732-01 1 17023348 17023348 T C ESPNP RNA 0.14 TCGA-A4-7732-01 1 227174187 227174187 A G ADCK3 Missense_Mutation p.I565V 0.46 deleterious(0.04) benign(0.034) TCGA-A4-7732-01 1 233134020 233134020 G A PCNXL2 Missense_Mutation p.S1923F 0.44 deleterious(0.03) benign(0.092) TCGA-A4-7732-01 1 29447533 29447533 G A TMEM200B Missense_Mutation p.L270F 0.40 deleterious(0) probably_damaging(0.994) TCGA-A4-7732-01 1 94548962 94548962 G A ABCA4 Silent p.I268I 0.46 TCGA-A4-7732-01 20 10385928 10385928 C A MKKS Missense_Mutation p.L560F 0.26 deleterious(0) probably_damaging(0.999) TCGA-A4-7732-01 20 30310074 30310074 T C BCL2L1 5'UTR 0.24 TCGA-A4-7732-01 2 138771361 138771361 C A HNMT Missense_Mutation p.D180E 0.29 tolerated(1) benign(0.003) TCGA-A4-7732-01 2 166210795 166210795 A C SCN2A Missense_Mutation p.I1005L 0.43 tolerated(0.27) benign(0.045) TCGA-A4-7732-01 2 178936278 178936278 G T PDE11A Missense_Mutation p.T296K 0.51 deleterious(0.03) possibly_damaging(0.613) TCGA-A4-7732-01 2 198571900 198571900 C T MARS2 Missense_Mutation p.H591Y 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.551) TCGA-A4-7732-01 2 27355508 27355521 TGGGTCCATTTTCT - PREB Frame_Shift_Del p.Q234Hfs*63 0.28 TCGA-A4-7732-01 2 61454345 61454345 A C USP34 Silent p.V2484V 0.55 TCGA-A4-7732-01 2 75929399 75929399 G T GCFC2 Missense_Mutation p.P182H 0.43 deleterious(0.01) possibly_damaging(0.9) TCGA-A4-7732-01 2 97017653 97017669 GACTACAGAAGTGAACT TTCTAC NCAPH Frame_Shift_Del p.D269Ffs*7 0.38 TCGA-A4-7732-01 3 197427622 197427622 C G KIAA0226 Missense_Mutation p.G375R 0.26 tolerated_low_confidence(0.29) benign(0.14) TCGA-A4-7732-01 5 140798373 140798373 C G PCDHGB7 Missense_Mutation p.T316R 0.17 tolerated(0.09) probably_damaging(0.981) TCGA-A4-7732-01 5 14387672 14387672 T - TRIO Frame_Shift_Del p.L1233Cfs*29 0.26 TCGA-A4-7732-01 5 149006787 149006787 A G ARHGEF37 Missense_Mutation p.N538S 0.37 tolerated(0.67) benign(0.016) TCGA-A4-7732-01 6 27222771 27222771 C T PRSS16 Missense_Mutation p.T446I 0.45 tolerated(0.92) benign(0.002) TCGA-A4-7732-01 6 27835118 27835118 C A HIST1H1B Missense_Mutation p.A64S 0.04 deleterious(0) probably_damaging(0.996) TCGA-A4-7732-01 6 31779708 31779708 G A HSPA1L Silent p.G14G 0.41 TCGA-A4-7732-01 7 103029857 103029857 G A SLC26A5 Silent p.A442A 0.38 TCGA-A4-7732-01 8 144776267 144776267 G A ZNF707 Missense_Mutation p.R228H 0.23 tolerated(0.09) benign(0.397) TCGA-A4-7732-01 8 144801161 144801161 A T MAPK15 Splice_Site p.X140_splice 0.55 TCGA-A4-7732-01 9 32988092 32988092 T A APTX Nonsense_Mutation p.K57* 0.35 TCGA-A4-7732-01 9 4585458 4585458 T C SLC1A1 Missense_Mutation p.L492P 0.48 tolerated(0.16) benign(0.027) TCGA-A4-7732-01 9 98268787 98268787 C T PTCH1 Missense_Mutation p.G99D 0.43 deleterious(0) probably_damaging(0.987) TCGA-A4-7732-01 X 2772026 2772026 T A GYG2 Missense_Mutation p.I83N 0.93 deleterious(0) possibly_damaging(0.797) TCGA-A4-7732-01 X 49050637 49050639 TGT C SYP Frame_Shift_Del p.N136Rfs*20 0.84 TCGA-A4-7732-01 X 71829514 71829514 C T PHKA1 Missense_Mutation p.V856I 0.89 tolerated(0.1) possibly_damaging(0.449) TCGA-A4-7734-01 10 17127627 17127627 T G CUBN Missense_Mutation p.Q693H 0.39 deleterious(0.02) possibly_damaging(0.863) TCGA-A4-7734-01 10 63852307 63852307 C A ARID5B Silent p.R1029R 0.33 TCGA-A4-7734-01 10 74095536 74095536 A T DNAJB12 3'UTR 0.40 TCGA-A4-7734-01 11 119206410 119206410 G A RNF26 Missense_Mutation p.S193N 0.41 deleterious(0) probably_damaging(0.983) TCGA-A4-7734-01 11 48181586 48181586 T A PTPRJ Missense_Mutation p.D1181E 0.38 deleterious(0) possibly_damaging(0.899) TCGA-A4-7734-01 11 64974118 64974118 T G CAPN1 Missense_Mutation p.F513C 0.21 deleterious(0) possibly_damaging(0.489) TCGA-A4-7734-01 11 65271872 65271872 T C MALAT1 RNA 0.39 TCGA-A4-7734-01 12 14927594 14927594 C G H2AFJ Missense_Mutation p.L64V 0.33 deleterious_low_confidence(0.01) benign(0.228) TCGA-A4-7734-01 12 69326479 69326479 T A CPM Missense_Mutation p.S47C 0.53 deleterious(0.01) benign(0.041) TCGA-A4-7734-01 12 89744677 89744677 A G DUSP6 Missense_Mutation p.S176P 0.43 tolerated(0.08) benign(0.01) TCGA-A4-7734-01 14 74756774 74756774 G T ABCD4 Missense_Mutation p.L459M 0.33 deleterious(0.04) probably_damaging(0.991) TCGA-A4-7734-01 15 56208931 56208934 CATG - NEDD4 Frame_Shift_Del p.M33Afs*16 0.35 TCGA-A4-7734-01 15 64454355 64454355 T C PPIB Splice_Site p.X46_splice 0.43 TCGA-A4-7734-01 16 57719830 57719830 C T GPR97 Missense_Mutation p.S511F 0.44 deleterious(0) probably_damaging(1) TCGA-A4-7734-01 16 57806198 57806198 T C KIFC3 Silent p.V106V 0.41 TCGA-A4-7734-01 17 1370772 1370772 A C MYO1C Splice_Site p.X1022_splice 0.42 TCGA-A4-7734-01 17 48818486 48818486 T C LUC7L3 Missense_Mutation p.M77T 0.27 tolerated(0.42) unknown(0) TCGA-A4-7734-01 17 57724783 57724783 A T CLTC Missense_Mutation p.N92I 0.30 deleterious(0) possibly_damaging(0.859) TCGA-A4-7734-01 17 79425869 79425869 G T RP11-1055B8.7 Nonsense_Mutation p.E1827* 0.23 TCGA-A4-7734-01 18 2920265 2920265 C T LPIN2 3'UTR 0.33 TCGA-A4-7734-01 19 36606528 36606528 C G TBCB Missense_Mutation p.F22L 0.38 tolerated(0.08) benign(0.005) TCGA-A4-7734-01 19 42795453 42795453 G A CIC Missense_Mutation p.A845T 0.42 probably_damaging(0.956) TCGA-A4-7734-01 19 50783389 50783389 C T MYH14 Silent p.H1376H 0.38 TCGA-A4-7734-01 19 8455263 8455263 G C RAB11B 5'UTR 0.33 TCGA-A4-7734-01 1 112524716 112524716 C T KCND3 Silent p.P211P 0.37 TCGA-A4-7734-01 1 155638446 155638446 A T YY1AP1 Missense_Mutation p.M422K 0.32 deleterious(0.05) benign(0.373) TCGA-A4-7734-01 1 19181066 19181066 C T TAS1R2 Missense_Mutation p.A300T 0.34 deleterious(0) probably_damaging(0.998) TCGA-A4-7734-01 1 244869121 244869121 T A DESI2 3'UTR 0.47 TCGA-A4-7734-01 1 39800224 39800224 T G MACF1 Intron 0.33 TCGA-A4-7734-01 1 91406116 91406116 G A ZNF644 Silent p.F265F 0.39 TCGA-A4-7734-01 20 57597910 57597910 T C TUBB1 Missense_Mutation p.M23T 0.55 tolerated_low_confidence(0.23) benign(0.01) TCGA-A4-7734-01 21 34927198 34927198 A - SON Frame_Shift_Del p.E1889Rfs*117 0.16 TCGA-A4-7734-01 21 43963563 43963563 G A SLC37A1 Missense_Mutation p.G194E 0.30 deleterious(0) probably_damaging(0.987) TCGA-A4-7734-01 2 114399722 114399722 G A RABL2A 3'UTR 0.36 TCGA-A4-7734-01 2 173352903 173352903 C A ITGA6 Missense_Mutation p.Q818K 0.37 deleterious(0.01) benign(0.016) TCGA-A4-7734-01 2 180310448 180310448 T - ZNF385B Frame_Shift_Del p.K308Nfs*25 0.26 TCGA-A4-7734-01 2 21251317 21251317 G A APOB Nonsense_Mutation p.Q571* 0.39 TCGA-A4-7734-01 3 27161285 27161286 - GAT NEK10 In_Frame_Ins p.S1109dup 0.36 TCGA-A4-7734-01 3 27297798 27297798 G A NEK10 Silent p.I693I 0.33 TCGA-A4-7734-01 3 27297799 27297799 A T NEK10 Missense_Mutation p.I693N 0.30 deleterious(0) probably_damaging(0.994) TCGA-A4-7734-01 3 42727131 42727131 G A KLHL40 Silent p.Q7Q 0.50 TCGA-A4-7734-01 4 126411930 126411930 C A FAT4 Silent p.I4651I 0.43 TCGA-A4-7734-01 4 89410409 89410409 C G HERC5 Silent p.V685V 0.44 TCGA-A4-7734-01 5 149644564 149644564 C G CAMK2A Missense_Mutation p.E58Q 0.28 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-A4-7734-01 5 6620336 6620336 C T NSUN2 Missense_Mutation p.S233N 0.07 deleterious(0) probably_damaging(1) TCGA-A4-7734-01 5 72378596 72378596 A C FCHO2 Missense_Mutation p.E730A 0.58 deleterious(0.03) possibly_damaging(0.582) TCGA-A4-7734-01 6 112392610 112392610 C T TUBE1 3'UTR 0.29 TCGA-A4-7734-01 6 17796913 17796913 T G KIF13A Missense_Mutation p.T977P 0.43 deleterious(0) probably_damaging(0.939) TCGA-A4-7734-01 6 56463337 56463337 T C DST Silent p.A1332A 0.39 TCGA-A4-7734-01 7 116423433 116423433 T A MET Missense_Mutation p.S1254R 0.59 deleterious(0) probably_damaging(0.992) TCGA-A4-7734-01 7 123599995 123599995 T A SPAM1 Intron 0.55 TCGA-A4-7734-01 7 66514966 66514966 G T TYW1 Missense_Mutation p.G339C 0.24 deleterious(0.02) benign(0.003) TCGA-A4-7734-01 8 110420393 110420393 G C PKHD1L1 Silent p.G643G 0.20 TCGA-A4-7734-01 8 145651588 145651588 G T VPS28 Missense_Mutation p.P14H 0.64 deleterious(0) probably_damaging(0.943) TCGA-A4-7734-01 9 125582792 125582792 G A PDCL Nonsense_Mutation p.Q160* 0.36 TCGA-A4-7734-01 9 130167105 130167105 A G SLC2A8 Missense_Mutation p.M329V 0.20 deleterious(0) possibly_damaging(0.74) TCGA-A4-7734-01 9 20990148 20990148 T A FOCAD Missense_Mutation p.F1677L 0.43 tolerated(0.1) possibly_damaging(0.84) TCGA-A4-7734-01 9 72913102 72913102 G C SMC5 Missense_Mutation p.R425P 0.35 tolerated(0.08) possibly_damaging(0.657) TCGA-A4-7734-01 9 79981712 79981712 A C VPS13A Missense_Mutation p.I2799L 0.46 deleterious(0.03) benign(0.008) TCGA-A4-7734-01 X 118370291 118370291 C T PGRMC1 5'UTR 0.52 TCGA-A4-7734-01 X 54574779 54574779 C T GNL3L Missense_Mutation p.R250C 0.08 deleterious(0.03) possibly_damaging(0.79) TCGA-A4-7734-01 X 78427128 78427128 G - GPR174 Frame_Shift_Del p.V209Ffs*21 0.30 TCGA-A4-7828-01 10 127442312 127442312 A G EDRF1 Missense_Mutation p.N1148S 0.34 tolerated(0.21) benign(0.014) TCGA-A4-7828-01 10 32854549 32854549 G T CCDC7 Splice_Site p.X399_splice 0.07 TCGA-A4-7828-01 10 48371023 48371023 G T ZNF488 Missense_Mutation p.S164I 0.05 deleterious(0) probably_damaging(0.987) TCGA-A4-7828-01 11 120300474 120300474 C T ARHGEF12 Silent p.I239I 0.04 TCGA-A4-7828-01 11 74883496 74883496 G C SLCO2B1 Missense_Mutation p.G285A 0.29 tolerated(0.59) benign(0.094) TCGA-A4-7828-01 12 54857070 54857070 A G GTSF1 Silent p.D43D 0.29 TCGA-A4-7828-01 14 23859655 23859655 C G MYH6 Missense_Mutation p.A1115P 0.35 deleterious(0) probably_damaging(1) TCGA-A4-7828-01 14 31353851 31353851 A C COCH Missense_Mutation p.N241T 0.25 tolerated(0.69) possibly_damaging(0.848) TCGA-A4-7828-01 15 22872435 22872444 AAACTGCCAT - TUBGCP5 Frame_Shift_Del p.N989Cfs*4 0.10 TCGA-A4-7828-01 17 49063070 49063071 AA - SPAG9 Frame_Shift_Del p.I1003Tfs*16 0.14 TCGA-A4-7828-01 17 56281634 56281634 G A EPX Silent p.L666L 0.31 TCGA-A4-7828-01 17 80129603 80129603 C G CCDC57 Missense_Mutation p.S619T 0.17 tolerated(0.27) benign(0.025) TCGA-A4-7828-01 18 5416056 5416056 T A EPB41L3 Missense_Mutation p.N610Y 0.27 deleterious(0.01) possibly_damaging(0.724) TCGA-A4-7828-01 19 11453637 11453637 G T TMEM205 Missense_Mutation p.Q142K 0.32 tolerated(0.46) benign(0.03) TCGA-A4-7828-01 19 43683069 43683069 C A PSG5 Intron 0.03 TCGA-A4-7828-01 19 55966664 55966664 G A ISOC2 Nonsense_Mutation p.Q144* 0.16 TCGA-A4-7828-01 1 11184573 11184573 G T MTOR Missense_Mutation p.S2215Y 0.32 deleterious(0) possibly_damaging(0.77) TCGA-A4-7828-01 1 114948195 114948195 G A TRIM33 Missense_Mutation p.H869Y 0.28 deleterious(0.01) benign(0.326) TCGA-A4-7828-01 1 55118778 55118778 A C MROH7 Missense_Mutation p.D60A 0.31 tolerated_low_confidence(0.28) benign(0.031) TCGA-A4-7828-01 20 41306544 41306544 G T PTPRT Missense_Mutation p.P372Q 0.28 tolerated(0.2) probably_damaging(0.994) TCGA-A4-7828-01 20 62851191 62851191 C T MYT1 Silent p.D699D 0.22 TCGA-A4-7828-01 2 169938176 169938176 G A DHRS9 Missense_Mutation p.D29N 0.06 tolerated(0.09) benign(0.017) TCGA-A4-7828-01 2 197781305 197781305 C A PGAP1 Missense_Mutation p.G105V 0.20 deleterious(0) probably_damaging(0.969) TCGA-A4-7828-01 2 21224920 21224921 - G APOB Frame_Shift_Ins p.D4459Rfs*20 0.22 TCGA-A4-7828-01 4 57888371 57888373 AAG - POLR2B In_Frame_Del p.E827del 0.18 TCGA-A4-7828-01 5 140307713 140307713 A G PCDHAC1 Silent p.Q412Q 0.22 TCGA-A4-7828-01 5 169446069 169446069 A G DOCK2 Missense_Mutation p.D1113G 0.23 deleterious(0) probably_damaging(0.959) TCGA-A4-7828-01 5 52366069 52366069 C G ITGA2 Silent p.P738P 0.26 TCGA-A4-7828-01 5 79034426 79034426 G - CMYA5 Frame_Shift_Del p.E3281Kfs*28 0.16 TCGA-A4-7828-01 7 100806695 100806695 T A VGF Missense_Mutation p.E477V 0.27 deleterious_low_confidence(0) unknown(0) TCGA-A4-7828-01 7 47944905 47944905 T A PKD1L1 Missense_Mutation p.N514Y 0.23 deleterious(0) probably_damaging(0.962) TCGA-A4-7828-01 7 99129235 99129235 G A ZKSCAN5 Missense_Mutation p.S628N 0.05 deleterious(0.02) possibly_damaging(0.848) TCGA-A4-7828-01 8 145267981 145267981 C T MROH1 Intron 0.18 TCGA-A4-7828-01 8 68397000 68397000 G A CPA6 Missense_Mutation p.P221S 0.26 tolerated(0.74) benign(0.383) TCGA-A4-7828-01 9 36123087 36123087 C G RECK 3'UTR 0.09 TCGA-A4-7828-01 X 109695056 109695057 GA T RGAG1 Frame_Shift_Del p.R404Mfs*3 0.13 TCGA-A4-7828-01 X 131540269 131540269 T A MBNL3 Missense_Mutation p.Q110L 0.32 tolerated(0.86) benign(0.023) TCGA-A4-7828-01 X 152960547 152960547 C T SLC6A8 Nonsense_Mutation p.Q596* 0.15 TCGA-A4-7828-01 X 153657422 153657422 C A ATP6AP1 Missense_Mutation p.H64N 0.26 tolerated(0.26) probably_damaging(0.974) TCGA-A4-7915-01 10 89501012 89501012 C T PAPSS2 Silent p.D369D 0.28 TCGA-A4-7915-01 11 22294380 22294380 C A ANO5 Missense_Mutation p.P694T 0.29 deleterious(0) benign(0.172) TCGA-A4-7915-01 11 63679913 63679913 C A RCOR2 Missense_Mutation p.R374L 0.30 deleterious(0) probably_damaging(0.979) TCGA-A4-7915-01 11 6470187 6470187 C T TRIM3 3'UTR 0.13 TCGA-A4-7915-01 11 66444485 66444485 G A RBM4B Silent p.F22F 0.25 TCGA-A4-7915-01 11 92917687 92917687 C A SLC36A4 Splice_Site p.X60_splice 0.36 TCGA-A4-7915-01 14 20840924 20840924 T C TEP1 Silent p.K2348K 0.03 TCGA-A4-7915-01 15 43991328 43991328 C T CKMT1A 3'UTR 0.11 TCGA-A4-7915-01 16 30490672 30490672 G A ITGAL Missense_Mutation p.D156N 0.43 deleterious(0) possibly_damaging(0.878) TCGA-A4-7915-01 16 47005807 47005807 C - DNAJA2 Splice_Site p.X46_splice 0.22 TCGA-A4-7915-01 18 2951317 2951317 G T LPIN2 Missense_Mutation p.P109H 0.12 tolerated(0.42) probably_damaging(0.981) TCGA-A4-7915-01 19 3762750 3762750 G T MRPL54 Missense_Mutation p.A18S 0.30 tolerated(0.2) benign(0.004) TCGA-A4-7915-01 19 4290585 4290585 C T SHD Silent p.A326A 0.39 TCGA-A4-7915-01 19 47422875 47422875 C - ARHGAP35 Frame_Shift_Del p.Q315Rfs*32 0.21 TCGA-A4-7915-01 1 176809321 176809321 G A PAPPA2 Missense_Mutation p.D1739N 0.29 deleterious(0) probably_damaging(1) TCGA-A4-7915-01 1 237604652 237604652 G C RYR2 Missense_Mutation p.D347H 0.03 probably_damaging(0.989) TCGA-A4-7915-01 1 3342300 3342300 A G PRDM16 Missense_Mutation p.H1032R 0.19 tolerated(0.09) benign(0.008) TCGA-A4-7915-01 1 6639491 6639491 C T TAS1R1 Silent p.A791A 0.40 TCGA-A4-7915-01 20 45315804 45315804 T C TP53RK Missense_Mutation p.E117G 0.31 tolerated(0.33) benign(0.009) TCGA-A4-7915-01 22 38877225 38877225 G A KDELR3 Nonsense_Mutation p.W120* 0.29 TCGA-A4-7915-01 2 11716612 11716612 T A GREB1 Missense_Mutation p.N196K 0.03 deleterious(0) benign(0.281) TCGA-A4-7915-01 3 113376859 113376859 C A KIAA2018 Missense_Mutation p.A1224S 0.27 benign(0.006) TCGA-A4-7915-01 3 51750001 51750001 C T GRM2 Missense_Mutation p.L738F 0.29 deleterious(0) probably_damaging(1) TCGA-A4-7915-01 3 62477094 62477096 AAC - CADPS In_Frame_Del p.V982del 0.32 TCGA-A4-7915-01 4 123305047 123305047 C G ADAD1 Missense_Mutation p.S152C 0.26 tolerated(0.18) benign(0.033) TCGA-A4-7915-01 6 137245376 137245376 G A SLC35D3 Missense_Mutation p.A265T 0.14 tolerated(0.07) probably_damaging(0.959) TCGA-A4-7915-01 6 137519461 137519461 C A IFNGR1 Missense_Mutation p.A393S 0.05 tolerated(0.1) benign(0.062) TCGA-A4-7915-01 6 28269463 28269463 C T PGBD1 Missense_Mutation p.A611V 0.03 tolerated(0.33) probably_damaging(0.998) TCGA-A4-7915-01 7 107572810 107572810 G A LAMB1 Missense_Mutation p.P1401S 0.31 tolerated(0.17) benign(0.005) TCGA-A4-7915-01 7 121653581 121653581 G T PTPRZ1 Missense_Mutation p.S1494I 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.613) TCGA-A4-7915-01 8 27737097 27737097 C T SCARA5 Missense_Mutation p.R447Q 0.26 tolerated(0.07) benign(0.016) TCGA-A4-7915-01 9 36170395 36170395 C T CCIN Missense_Mutation p.A299V 0.06 deleterious(0) benign(0.376) TCGA-A4-7996-01 10 101606844 101606844 G - ABCC2 Frame_Shift_Del p.L1426Yfs*5 0.42 TCGA-A4-7996-01 10 127455343 127455343 T - MMP21 Frame_Shift_Del p.K533Rfs*35 0.34 TCGA-A4-7996-01 10 27687708 27687708 A G PTCHD3 Missense_Mutation p.F607L 0.66 tolerated(1) benign(0.002) TCGA-A4-7996-01 10 51585156 51585156 G T NCOA4 Missense_Mutation p.D435Y 0.65 deleterious(0) probably_damaging(0.94) TCGA-A4-7996-01 10 73111339 73111339 T A SLC29A3 Missense_Mutation p.V135D 0.05 deleterious(0) possibly_damaging(0.836) TCGA-A4-7996-01 10 88259986 88259986 C A WAPAL Missense_Mutation p.K338N 0.70 tolerated_low_confidence(0.36) benign(0.058) TCGA-A4-7996-01 10 89503313 89503313 C T PAPSS2 Missense_Mutation p.A469V 0.54 deleterious(0.04) probably_damaging(1) TCGA-A4-7996-01 10 89717645 89717646 AT - PTEN Frame_Shift_Del p.Y225Ffs*17 0.39 TCGA-A4-7996-01 10 99375962 99375962 A G MORN4 3'UTR 0.62 TCGA-A4-7996-01 10 99527220 99527220 G A SFRP5 3'UTR 0.87 TCGA-A4-7996-01 11 110007683 110007683 T C ZC3H12C Missense_Mutation p.I106T 0.52 tolerated(0.57) benign(0.001) TCGA-A4-7996-01 11 113295344 113295344 A G DRD2 Silent p.D10D 0.27 TCGA-A4-7996-01 11 11942036 11942036 G T USP47 Missense_Mutation p.D337Y 0.30 deleterious(0.01) probably_damaging(0.953) TCGA-A4-7996-01 11 4510932 4510932 C T OR52K1 Missense_Mutation p.R268C 0.29 deleterious(0.04) benign(0.008) TCGA-A4-7996-01 11 65144060 65144060 T C SLC25A45 Missense_Mutation p.M229V 0.27 deleterious(0) benign(0.158) TCGA-A4-7996-01 11 65423175 65423175 A G RELA Silent p.A339A 0.24 TCGA-A4-7996-01 11 69951883 69951883 C T ANO1 Missense_Mutation p.R246W 0.33 deleterious(0) probably_damaging(0.999) TCGA-A4-7996-01 11 71927907 71927909 CTA - FOLR2 5'UTR 0.24 TCGA-A4-7996-01 11 9173965 9173965 G - DENND5A Frame_Shift_Del p.L821Cfs*40 0.27 TCGA-A4-7996-01 12 122190050 122190050 G A TMEM120B Missense_Mutation p.E128K 0.34 deleterious(0) probably_damaging(0.982) TCGA-A4-7996-01 12 47628909 47628909 G T PCED1B Silent p.L21L 0.33 TCGA-A4-7996-01 14 102500785 102500785 A G DYNC1H1 Missense_Mutation p.N3584D 0.29 benign(0.047) TCGA-A4-7996-01 15 68489823 68489823 G A CALML4 Missense_Mutation p.R150W 0.33 deleterious(0) probably_damaging(0.998) TCGA-A4-7996-01 15 88679229 88679229 G C NTRK3 Missense_Mutation p.L270V 0.30 deleterious(0.04) probably_damaging(0.919) TCGA-A4-7996-01 15 89398462 89398462 C T ACAN Silent p.F882F 0.28 TCGA-A4-7996-01 15 90026327 90026327 T C RHCG Missense_Mutation p.N165D 0.38 deleterious(0.01) probably_damaging(0.92) TCGA-A4-7996-01 16 1398015 1398021 ACTTGTG - BAIAP3 Splice_Site p.X1084_splice 0.50 TCGA-A4-7996-01 16 2905588 2905588 G A PRSS22 Silent p.S182S 0.53 TCGA-A4-7996-01 16 2905589 2905589 C T PRSS22 Missense_Mutation p.S182N 0.52 tolerated(0.19) probably_damaging(0.936) TCGA-A4-7996-01 16 3274128 3274128 G - ZNF200 Frame_Shift_Del p.R318Vfs*14 0.32 TCGA-A4-7996-01 16 84271117 84271117 G C KCNG4 5'UTR 0.38 TCGA-A4-7996-01 17 21319584 21319584 C T KCNJ12 Silent p.T310T 0.04 TCGA-A4-7996-01 17 27074242 27074243 - C TRAF4 Frame_Shift_Ins p.K53Qfs*4 0.35 TCGA-A4-7996-01 17 27975326 27975326 C A SSH2 Missense_Mutation p.M394I 0.55 deleterious(0) probably_damaging(0.995) TCGA-A4-7996-01 17 38416825 38416825 G A WIPF2 Silent p.Q34Q 0.24 TCGA-A4-7996-01 17 38487311 38487311 A G RARA 5'UTR 0.12 TCGA-A4-7996-01 17 76354407 76354407 C T SOCS3 3'UTR 0.40 TCGA-A4-7996-01 18 29867256 29867256 A G GAREM Missense_Mutation p.F435S 0.32 tolerated(0.64) benign(0.012) TCGA-A4-7996-01 18 47800703 47800703 C T MBD1 Silent p.R333R 0.06 TCGA-A4-7996-01 18 74154041 74154041 C T ZNF516 Missense_Mutation p.E324K 0.28 deleterious(0) probably_damaging(0.997) TCGA-A4-7996-01 19 15350519 15350519 C T BRD4 Silent p.E1132E 0.38 TCGA-A4-7996-01 19 40419757 40419757 A G FCGBP Silent p.H1079H 0.27 TCGA-A4-7996-01 19 48956307 48956308 - TTT GRWD1 3'UTR 0.29 TCGA-A4-7996-01 19 49658077 49658077 C G HRC Missense_Mutation p.E140Q 0.30 deleterious(0.01) probably_damaging(0.932) TCGA-A4-7996-01 19 53762787 53762787 C T VN1R2 Nonsense_Mutation p.R387* 0.24 TCGA-A4-7996-01 19 5824062 5824062 A G NRTN 5'UTR 0.18 TCGA-A4-7996-01 19 7810714 7810714 G A CD209 Silent p.I146I 0.31 TCGA-A4-7996-01 1 110741097 110741097 C T SLC6A17 3'UTR 0.36 TCGA-A4-7996-01 1 12089277 12089277 C G MIIP Intron 0.35 TCGA-A4-7996-01 1 12266986 12266986 C T TNFRSF1B Missense_Mutation p.S432L 0.30 deleterious(0.03) benign(0.421) TCGA-A4-7996-01 1 149858178 149858178 C T HIST2H2BE Missense_Mutation p.A5T 0.05 tolerated_low_confidence(0.07) unknown(0) TCGA-A4-7996-01 1 152082279 152082279 C T TCHH Silent p.R1138R 0.28 TCGA-A4-7996-01 1 154841688 154841688 G A KCNN3 Silent p.S251S 0.37 TCGA-A4-7996-01 1 155104075 155104075 A G EFNA1 Missense_Mutation p.K118R 0.21 tolerated(0.14) possibly_damaging(0.782) TCGA-A4-7996-01 1 15909721 15909721 T A AGMAT Missense_Mutation p.I148F 0.40 deleterious(0.02) benign(0.091) TCGA-A4-7996-01 1 19408095 19408095 A G UBR4 Intron 0.32 TCGA-A4-7996-01 1 212792590 212792590 G T ATF3 Intron 0.34 TCGA-A4-7996-01 1 48713171 48713171 C T SLC5A9 Missense_Mutation p.L693F 0.28 tolerated(0.07) possibly_damaging(0.707) TCGA-A4-7996-01 1 53287171 53287171 A G ZYG11B Missense_Mutation p.K702R 0.22 tolerated(0.58) benign(0.003) TCGA-A4-7996-01 1 55612677 55612677 A G USP24 Silent p.Y725Y 0.37 TCGA-A4-7996-01 1 62365295 62365295 C T INADL Missense_Mutation p.P1058S 0.31 deleterious(0.02) probably_damaging(0.989) TCGA-A4-7996-01 1 8674682 8674682 A T RERE Missense_Mutation p.S154T 0.31 benign(0.189) TCGA-A4-7996-01 20 19679325 19679325 G C SLC24A3 Splice_Site p.X573_splice 0.44 TCGA-A4-7996-01 20 49576203 49576203 T G MOCS3 Missense_Mutation p.L275W 0.53 deleterious(0) probably_damaging(0.99) TCGA-A4-7996-01 22 19965495 19965495 C G ARVCF Missense_Mutation p.D562H 0.26 deleterious(0) benign(0.413) TCGA-A4-7996-01 22 46655720 46655720 G - PKDREJ Frame_Shift_Del p.P1167Lfs*8 0.18 TCGA-A4-7996-01 2 102849533 102849533 C T IL1RL2 Nonsense_Mutation p.Q416* 0.27 TCGA-A4-7996-01 2 113885204 113885204 G A IL1RN Intron 0.22 TCGA-A4-7996-01 2 162227815 162227815 T C PSMD14 Silent p.I148I 0.17 TCGA-A4-7996-01 2 188368497 188368497 T A TFPI Intron 0.32 TCGA-A4-7996-01 2 189898818 189898819 - TT COL5A2 Frame_Shift_Ins p.I1493Kfs*31 0.15 TCGA-A4-7996-01 2 204039877 204039877 A T NBEAL1 Missense_Mutation p.N2082Y 0.32 deleterious(0.01) possibly_damaging(0.892) TCGA-A4-7996-01 2 220099806 220099806 C - ANKZF1 Frame_Shift_Del p.P489Lfs*22 0.21 TCGA-A4-7996-01 2 233660917 233660917 A G GIGYF2 Missense_Mutation p.Q563R 0.25 probably_damaging(0.995) TCGA-A4-7996-01 2 44139638 44139638 A G LRPPRC Missense_Mutation p.Y1070H 0.38 deleterious(0) probably_damaging(0.99) TCGA-A4-7996-01 2 74441208 74441208 G A MTHFD2 Missense_Mutation p.V298I 0.29 deleterious(0.02) benign(0.1) TCGA-A4-7996-01 2 74883759 74883759 C G SEMA4F Missense_Mutation p.R82G 0.29 deleterious(0) probably_damaging(0.916) TCGA-A4-7996-01 3 126194470 126194470 T C ZXDC Missense_Mutation p.E80G 0.62 tolerated_low_confidence(0.07) benign(0.007) TCGA-A4-7996-01 3 46307340 46307340 A G CCR3 Missense_Mutation p.S252G 0.42 deleterious(0.03) benign(0.036) TCGA-A4-7996-01 3 50294280 50294280 A C GNAI2 Missense_Mutation p.E240A 0.40 tolerated(0.19) benign(0.163) TCGA-A4-7996-01 4 128812805 128812805 C A PLK4 Missense_Mutation p.N669K 0.34 tolerated(0.12) benign(0.005) TCGA-A4-7996-01 4 153896859 153896859 G A FHDC1 Missense_Mutation p.G806S 0.37 tolerated(0.46) benign(0.09) TCGA-A4-7996-01 4 87809274 87809274 A T C4orf36 Missense_Mutation p.S74T 0.30 tolerated(0.74) possibly_damaging(0.682) TCGA-A4-7996-01 5 1074691 1074691 T G SLC12A7 Missense_Mutation p.K688T 0.31 deleterious(0) benign(0.424) TCGA-A4-7996-01 5 162940576 162940577 - A MAT2B Frame_Shift_Ins p.H92Qfs*22 0.29 TCGA-A4-7996-01 5 175843340 175843342 AGA - CLTB In_Frame_Del p.F8del 0.59 TCGA-A4-7996-01 5 176831350 176831350 A G F12 Missense_Mutation p.Y289H 0.35 tolerated(0.05) probably_damaging(0.919) TCGA-A4-7996-01 6 139563572 139563572 A G TXLNB 3'UTR 0.31 TCGA-A4-7996-01 6 162864432 162864432 C T PARK2 Silent p.K27K 0.30 TCGA-A4-7996-01 6 31927082 31927082 C A SKIV2L Missense_Mutation p.P11T 0.30 deleterious_low_confidence(0.02) benign(0.357) TCGA-A4-7996-01 6 32007842 32007849 CAGCCGAG GAC CYP21A2 Frame_Shift_Del p.Q267Dfs*27 0.17 TCGA-A4-7996-01 6 32139261 32139268 GCCACAAA - AGPAT1 Frame_Shift_Del p.L3Rfs*156 0.41 TCGA-A4-7996-01 6 33271676 33271676 A G TAPBP Missense_Mutation p.I464T 0.26 tolerated_low_confidence(0.11) benign(0.016) TCGA-A4-7996-01 6 51930865 51930865 A G PKHD1 Silent p.S263S 0.30 TCGA-A4-7996-01 7 103159949 103159949 T C RELN Silent p.L2561L 0.05 TCGA-A4-7996-01 7 111555869 111555869 G A DOCK4 Missense_Mutation p.T386I 0.26 deleterious(0) possibly_damaging(0.885) TCGA-A4-7996-01 7 150553627 150553627 G C AOC1 Silent p.P23P 0.44 TCGA-A4-7996-01 7 24727063 24727075 GACTTGAAGAAAA - MPP6 Frame_Shift_Del p.D485Qfs*18 0.43 TCGA-A4-7996-01 7 34889027 34889027 G A NPSR1 Intron 0.42 TCGA-A4-7996-01 7 44807159 44807159 G - ZMIZ2 Frame_Shift_Del p.G901Afs*73 0.17 TCGA-A4-7996-01 7 5633277 5633277 G A FSCN1 Missense_Mutation p.S237N 0.13 deleterious(0.04) benign(0.111) TCGA-A4-7996-01 8 141449171 141449172 TT - TRAPPC9 Frame_Shift_Del p.N335* 0.33 TCGA-A4-7996-01 8 28991695 28991695 C G KIF13B Missense_Mutation p.Q882H 0.35 tolerated(0.14) possibly_damaging(0.905) TCGA-A4-7996-01 8 53570007 53570007 C T RB1CC1 Silent p.L794L 0.34 TCGA-A4-7996-01 8 67405943 67405943 T A C8orf46 Silent p.I20I 0.29 TCGA-A4-7996-01 9 127572163 127572163 C T OLFML2A Silent p.Y477Y 0.32 TCGA-A4-7996-01 9 131607633 131607633 A T CCBL1 Missense_Mutation p.W18R 0.16 deleterious(0.04) possibly_damaging(0.473) TCGA-A4-7996-01 9 2718279 2718279 C T KCNV2 Silent p.R180R 0.31 TCGA-A4-7996-01 9 35699405 35699405 C A TLN1 Missense_Mutation p.K2274N 0.31 deleterious(0) probably_damaging(0.985) TCGA-A4-7996-01 X 73815805 73815805 T - RLIM Frame_Shift_Del p.N3Tfs*34 0.34 TCGA-A4-7997-01 10 101841440 101841440 T C CPN1 5'UTR 0.30 TCGA-A4-7997-01 10 104687226 104687226 G A CNNM2 Intron 0.26 TCGA-A4-7997-01 10 27459483 27459483 T C MASTL Missense_Mutation p.L532P 0.35 deleterious(0) probably_damaging(0.999) TCGA-A4-7997-01 10 73055666 73055666 C T UNC5B Silent p.L758L 0.39 TCGA-A4-7997-01 11 108155202 108155202 T C ATM Splice_Site p.X1331_splice 0.36 TCGA-A4-7997-01 11 17124313 17124313 A C PIK3C2A Missense_Mutation p.C1249W 0.36 deleterious(0) probably_damaging(1) TCGA-A4-7997-01 11 59811100 59811100 G A OOSP2 Missense_Mutation p.D75N 0.40 tolerated(0.19) benign(0.324) TCGA-A4-7997-01 11 94823276 94823276 C T ENDOD1 Missense_Mutation p.A62V 0.38 tolerated(0.21) benign(0.197) TCGA-A4-7997-01 12 132405713 132405713 C G ULK1 Silent p.A1010A 0.54 TCGA-A4-7997-01 12 21679409 21679409 G A C12orf39 Translation_Start_Site p.M1? 0.31 deleterious(0.04) benign(0.015) TCGA-A4-7997-01 12 22218064 22218064 T A CMAS Missense_Mutation p.V375E 0.50 tolerated(1) benign(0.001) TCGA-A4-7997-01 12 49416134 49416134 A C KMT2D Missense_Mutation p.N5447K 0.61 unknown(0) TCGA-A4-7997-01 12 6138619 6138619 G A VWF Silent p.H952H 0.60 TCGA-A4-7997-01 12 7014840 7014840 G C LRRC23 Missense_Mutation p.D15H 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-A4-7997-01 14 45605157 45605157 G A FANCM 5'UTR 0.47 TCGA-A4-7997-01 15 32916475 32916475 C T ARHGAP11A Silent p.L133L 0.37 TCGA-A4-7997-01 15 43023981 43023981 C T CDAN1 Missense_Mutation p.E526K 0.34 deleterious(0.02) probably_damaging(0.98) TCGA-A4-7997-01 15 52446239 52446239 C T GNB5 Silent p.G91G 0.31 TCGA-A4-7997-01 15 64021464 64021464 C T HERC1 Nonsense_Mutation p.W1042* 0.15 TCGA-A4-7997-01 15 99672333 99672333 G T SYNM Silent p.V1255V 0.34 TCGA-A4-7997-01 16 1869997 1869997 A G HAGH Silent p.N111N 0.21 TCGA-A4-7997-01 16 23646368 23646368 G A PALB2 Missense_Mutation p.S500F 0.26 tolerated(0.07) benign(0.048) TCGA-A4-7997-01 16 3807907 3807907 G A CREBBP Missense_Mutation p.T1171I 0.27 unknown(0) TCGA-A4-7997-01 16 396884 396884 T G AXIN1 Missense_Mutation p.K48Q 0.58 deleterious(0.02) possibly_damaging(0.864) TCGA-A4-7997-01 16 4895118 4895118 C G GLYR1 Missense_Mutation p.G38R 0.50 tolerated(0.22) possibly_damaging(0.715) TCGA-A4-7997-01 16 67863889 67863889 T A CENPT Missense_Mutation p.E322V 0.26 tolerated(0.24) benign(0.01) TCGA-A4-7997-01 17 39505660 39505660 C G KRT33A Missense_Mutation p.E123D 0.43 tolerated(0.18) benign(0.075) TCGA-A4-7997-01 17 45916322 45916322 C A SCRN2 Missense_Mutation p.A203S 0.33 tolerated(0.35) benign(0.142) TCGA-A4-7997-01 17 7755333 7755333 G C KDM6B Missense_Mutation p.W1410C 0.21 probably_damaging(0.998) TCGA-A4-7997-01 17 79094413 79094413 A C AATK Missense_Mutation p.L1108R 0.25 tolerated(0.74) benign(0.01) TCGA-A4-7997-01 17 80443450 80443450 G A NARF Missense_Mutation p.R350Q 0.11 deleterious(0) possibly_damaging(0.563) TCGA-A4-7997-01 18 29787415 29787415 A - MEP1B Frame_Shift_Del p.N250Ifs*10 0.22 TCGA-A4-7997-01 18 5394764 5394764 T G EPB41L3 Missense_Mutation p.K1061T 0.35 deleterious(0) probably_damaging(0.986) TCGA-A4-7997-01 19 12126384 12126384 G T ZNF433 Missense_Mutation p.S433Y 0.28 tolerated(1) possibly_damaging(0.781) TCGA-A4-7997-01 19 1223168 1223168 C T STK11 Missense_Mutation p.P369S 0.38 tolerated(0.08) possibly_damaging(0.901) TCGA-A4-7997-01 19 18368726 18368726 C G KIAA1683 Missense_Mutation p.G1123A 0.33 tolerated(0.27) benign(0.18) TCGA-A4-7997-01 19 43358239 43358239 G A PSG10P RNA 0.35 TCGA-A4-7997-01 19 56180114 56180114 G A U2AF2 Missense_Mutation p.G301S 0.33 deleterious(0) probably_damaging(0.995) TCGA-A4-7997-01 1 113212842 113212842 G T CAPZA1 3'UTR 0.38 TCGA-A4-7997-01 1 118502024 118502024 A G WDR3 Missense_Mutation p.K929R 0.34 tolerated(0.24) benign(0.001) TCGA-A4-7997-01 1 145761288 145761288 T C PDZK1 Silent p.D367D 0.39 TCGA-A4-7997-01 1 155491175 155491175 C T ASH1L Missense_Mutation p.E46K 0.33 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-A4-7997-01 1 179834038 179834038 C A IFRG15 Missense_Mutation p.G92C 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-A4-7997-01 1 203276571 203276586 TTCCGCCCCCGCCCTG - BTG2 3'UTR 0.43 TCGA-A4-7997-01 1 205770146 205770146 C T SLC41A1 Missense_Mutation p.V139M 0.31 deleterious(0) probably_damaging(0.995) TCGA-A4-7997-01 1 207109097 207109097 C T PIGR Missense_Mutation p.C371Y 0.39 deleterious(0) probably_damaging(1) TCGA-A4-7997-01 1 209974723 209974723 G A IRF6 Silent p.P12P 0.30 TCGA-A4-7997-01 1 226127230 226127230 G A LEFTY2 Silent p.L190L 0.34 TCGA-A4-7997-01 1 231472205 231472205 C A EXOC8 Missense_Mutation p.E429D 0.22 tolerated(0.82) benign(0.01) TCGA-A4-7997-01 1 234744251 234744251 G T IRF2BP2 Silent p.A330A 0.33 TCGA-A4-7997-01 1 46290209 46290209 T C MAST2 Silent p.D94D 0.33 TCGA-A4-7997-01 1 8422892 8422892 G T RERE Missense_Mutation p.R585S 0.30 probably_damaging(0.995) TCGA-A4-7997-01 20 419913 419913 G T TBC1D20 Silent p.V265V 0.60 TCGA-A4-7997-01 20 49219116 49219116 G A FAM65C Silent p.L380L 0.21 TCGA-A4-7997-01 20 52773943 52773943 T C CYP24A1 Missense_Mutation p.H473R 0.51 tolerated(0.07) possibly_damaging(0.751) TCGA-A4-7997-01 20 62369217 62369217 C T LIME1 Missense_Mutation p.R48W 0.12 tolerated(0.17) possibly_damaging(0.632) TCGA-A4-7997-01 21 27348294 27348294 A C APP Silent p.P424P 0.31 TCGA-A4-7997-01 2 148693040 148693040 G A ORC4 3'UTR 0.31 TCGA-A4-7997-01 2 209028281 209028281 G A CRYGA 5'UTR 0.33 TCGA-A4-7997-01 2 26533773 26533773 C - GPR113 Frame_Shift_Del p.L942Wfs*3 0.31 TCGA-A4-7997-01 2 26700635 26700635 G C OTOF Intron 0.41 TCGA-A4-7997-01 2 54587528 54587528 G T C2orf73 Silent p.L231L 0.21 TCGA-A4-7997-01 2 98341626 98341626 C A ZAP70 Missense_Mutation p.H158Q 0.48 deleterious(0) probably_damaging(1) TCGA-A4-7997-01 3 121591418 121591418 G A EAF2 Missense_Mutation p.M173I 0.53 deleterious(0.01) probably_damaging(0.937) TCGA-A4-7997-01 3 130287032 130287032 G A COL6A6 Missense_Mutation p.G662D 0.26 deleterious(0) probably_damaging(1) TCGA-A4-7997-01 3 148930432 148930432 T C CP Missense_Mutation p.Y67C 0.43 deleterious(0) probably_damaging(1) TCGA-A4-7997-01 3 184071155 184071155 C A CLCN2 Silent p.G637G 0.47 TCGA-A4-7997-01 3 43618738 43618738 T A ANO10 Missense_Mutation p.Y203F 0.33 deleterious(0) probably_damaging(1) TCGA-A4-7997-01 3 4490972 4490972 A C SUMF1 Missense_Mutation p.V166G 0.32 deleterious(0) probably_damaging(0.937) TCGA-A4-7997-01 3 56787577 56787577 G C ARHGEF3 Silent p.S163S 0.20 TCGA-A4-7997-01 3 69096768 69096770 GAA - TMF1 In_Frame_Del p.S363del 0.33 TCGA-A4-7997-01 4 3156098 3156098 C A HTT Missense_Mutation p.Q1193K 0.27 benign(0.044) TCGA-A4-7997-01 4 65180367 65180367 G A TECRL Missense_Mutation p.H184Y 0.32 deleterious(0.01) probably_damaging(0.972) TCGA-A4-7997-01 4 77941678 77941678 T G SEPT11 Missense_Mutation p.F270V 0.34 deleterious(0) probably_damaging(1) TCGA-A4-7997-01 5 142416823 142416823 A G ARHGAP26 Missense_Mutation p.R403G 0.53 deleterious(0.01) benign(0.289) TCGA-A4-7997-01 5 147000262 147000262 G T JAKMIP2 Missense_Mutation p.D703E 0.50 tolerated(0.1) benign(0.197) TCGA-A4-7997-01 5 159626092 159626092 G C FABP6 5'UTR 0.32 TCGA-A4-7997-01 5 162930332 162930332 A T MAT2B 5'Flank 0.32 TCGA-A4-7997-01 5 172518026 172518026 C G CREBRF Missense_Mutation p.L282V 0.28 tolerated_low_confidence(0.57) benign(0.002) TCGA-A4-7997-01 5 36984988 36984988 A T NIPBL Missense_Mutation p.E569V 0.40 deleterious_low_confidence(0.01) benign(0.261) TCGA-A4-7997-01 5 72470002 72470002 T A TMEM174 3'UTR 0.05 TCGA-A4-7997-01 6 158288583 158288583 G A SNX9 Missense_Mutation p.R6Q 0.33 tolerated(0.29) probably_damaging(0.997) TCGA-A4-7997-01 6 34512076 34512076 G T SPDEF Missense_Mutation p.Q53K 0.24 tolerated_low_confidence(0.18) benign(0.071) TCGA-A4-7997-01 7 116417463 116417463 C T MET Missense_Mutation p.H1112Y 0.52 deleterious(0) probably_damaging(0.996) TCGA-A4-7997-01 7 117365303 117365303 G C CTTNBP2 Missense_Mutation p.S1355C 0.22 tolerated(0.19) benign(0.033) TCGA-A4-7997-01 7 151917756 151917756 C A KMT2C Missense_Mutation p.Q1188H 0.45 probably_damaging(0.984) TCGA-A4-7997-01 7 42958941 42958941 A T PSMA2 Intron 0.55 TCGA-A4-7997-01 8 54960465 54960465 T A LYPLA1 3'UTR 0.64 TCGA-A4-7997-01 8 95201459 95201459 A C CDH17 Missense_Mutation p.F36V 0.81 deleterious(0) possibly_damaging(0.698) TCGA-A4-7997-01 9 104449145 104449145 C G GRIN3A Missense_Mutation p.G346A 0.48 tolerated(0.19) benign(0.242) TCGA-A4-7997-01 9 16419221 16419221 A G BNC2 Silent p.S1022S 0.30 TCGA-A4-8098-01 10 104415049 104415049 G A TRIM8 Silent p.T293T 0.08 TCGA-A4-8098-01 10 115372127 115372127 C G NRAP Missense_Mutation p.A1122P 0.26 deleterious(0.04) benign(0.001) TCGA-A4-8098-01 10 50819621 50819621 G C SLC18A3 Missense_Mutation p.G279R 0.24 deleterious(0) probably_damaging(0.997) TCGA-A4-8098-01 10 5790239 5790239 T - FAM208B Frame_Shift_Del p.G1621Vfs*3 0.19 TCGA-A4-8098-01 10 70450862 70450862 T G TET1 Missense_Mutation p.I1901S 0.56 deleterious(0.01) benign(0.044) TCGA-A4-8098-01 10 71868875 71868875 C A H2AFY2 Missense_Mutation p.Q289K 0.12 tolerated(1) probably_damaging(0.965) TCGA-A4-8098-01 11 117077797 117077797 G A PCSK7 Silent p.I622I 0.18 TCGA-A4-8098-01 11 128840894 128840894 C T ARHGAP32 Missense_Mutation p.R1391Q 0.43 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-A4-8098-01 11 18568448 18568448 G - UEVLD Frame_Shift_Del p.L289Cfs*11 0.27 TCGA-A4-8098-01 11 21594920 21594920 A T NELL1 Missense_Mutation p.M783L 0.34 tolerated(0.12) benign(0.002) TCGA-A4-8098-01 11 27412675 27412676 - AAG LGR4 In_Frame_Ins p.S122_E123insL 0.32 TCGA-A4-8098-01 11 31482191 31482191 T C IMMP1L Missense_Mutation p.H59R 0.29 tolerated(0.75) benign(0.014) TCGA-A4-8098-01 11 36472765 36472765 C T PRR5L Missense_Mutation p.H198Y 0.42 deleterious(0) probably_damaging(0.968) TCGA-A4-8098-01 11 46804912 46804912 A G CKAP5 Missense_Mutation p.S721P 0.07 deleterious(0.02) benign(0.102) TCGA-A4-8098-01 11 67352235 67352235 G A GSTP1 Missense_Mutation p.R75H 0.46 tolerated(0.06) benign(0.244) TCGA-A4-8098-01 11 77580812 77580812 G A AAMDC Silent p.E59E 0.34 TCGA-A4-8098-01 11 82877724 82877724 A G PCF11 Silent p.K595K 0.42 TCGA-A4-8098-01 11 93808377 93808378 - AC HEPHL1 Frame_Shift_Ins p.F516Pfs*12 0.13 TCGA-A4-8098-01 12 4737430 4737430 T G AKAP3 Missense_Mutation p.K213T 0.59 deleterious(0.04) probably_damaging(0.957) TCGA-A4-8098-01 12 54856511 54856511 T A GTSF1 Splice_Site p.X82_splice 0.28 TCGA-A4-8098-01 12 65460514 65460514 G T WIF1 Missense_Mutation p.L213I 0.26 deleterious(0.03) probably_damaging(0.96) TCGA-A4-8098-01 13 25029240 25029240 T C PARP4 Silent p.T891T 0.36 TCGA-A4-8098-01 13 33629467 33629467 A - KL Intron 0.32 TCGA-A4-8098-01 13 46658419 46658419 A C CPB2 Missense_Mutation p.F70L 0.44 tolerated(0.19) possibly_damaging(0.691) TCGA-A4-8098-01 14 24032848 24032848 C T AP1G2 Splice_Site p.X411_splice 0.66 TCGA-A4-8098-01 14 45711249 45711249 A C MIS18BP1 Silent p.L377L 0.65 TCGA-A4-8098-01 15 101529603 101529603 A G LRRK1 Silent p.T254T 0.47 TCGA-A4-8098-01 15 44090645 44090645 A T SERINC4 Silent p.I172I 0.47 TCGA-A4-8098-01 16 15880497 15880497 G T MYH11 Missense_Mutation p.T208K 0.36 benign(0.013) TCGA-A4-8098-01 16 18810023 18810023 A G ARL6IP1 Missense_Mutation p.L57P 0.38 deleterious(0) probably_damaging(0.977) TCGA-A4-8098-01 16 18882177 18882177 G A SMG1 Missense_Mutation p.A779V 0.54 tolerated(0.75) benign(0.112) TCGA-A4-8098-01 16 30456699 30456699 A T SEPHS2 Missense_Mutation p.I117N 0.37 probably_damaging(0.973) TCGA-A4-8098-01 16 31098021 31098021 C T PRSS53 Silent p.Q147Q 0.47 TCGA-A4-8098-01 16 56485680 56485680 T C OGFOD1 Splice_Site p.X52_splice 0.35 TCGA-A4-8098-01 16 72120699 72120699 G T TXNL4B Missense_Mutation p.S96Y 0.41 deleterious(0) possibly_damaging(0.83) TCGA-A4-8098-01 16 89169104 89169104 G A ACSF3 Silent p.A253A 0.07 TCGA-A4-8098-01 17 34077159 34077159 G C GAS2L2 Silent p.P188P 0.32 TCGA-A4-8098-01 17 34172014 34172014 G T TAF15 Missense_Mutation p.G571C 0.33 deleterious_low_confidence(0) unknown(0) TCGA-A4-8098-01 17 45056017 45056017 C T RPRML Silent p.L119L 0.37 TCGA-A4-8098-01 17 45914207 45914207 G A LRRC46 Missense_Mutation p.M229I 0.30 tolerated(0.44) benign(0.002) TCGA-A4-8098-01 17 48549793 48549793 G A ACSF2 Missense_Mutation p.R443Q 0.57 tolerated(0.13) benign(0.007) TCGA-A4-8098-01 17 65665781 65665781 T C PITPNC1 Splice_Site p.X206_splice 0.61 TCGA-A4-8098-01 17 7189210 7189210 G C SLC2A4 Missense_Mutation p.G437R 0.36 tolerated(0.13) benign(0.402) TCGA-A4-8098-01 17 7399344 7399344 C G POLR2A Missense_Mutation p.P60A 0.35 probably_damaging(1) TCGA-A4-8098-01 17 76491997 76491997 C G DNAH17 Missense_Mutation p.G1941R 0.22 probably_damaging(0.998) TCGA-A4-8098-01 19 12902787 12902787 T C JUNB Missense_Mutation p.Y68H 0.41 tolerated(0.53) possibly_damaging(0.664) TCGA-A4-8098-01 19 13065000 13065000 T - GADD45GIP1 3'UTR 0.32 TCGA-A4-8098-01 19 34712486 34712486 G T LSM14A Missense_Mutation p.R404L 0.32 deleterious(0.01) benign(0.021) TCGA-A4-8098-01 19 38572702 38572702 T C SIPA1L3 Missense_Mutation p.L166P 0.41 deleterious(0) probably_damaging(0.984) TCGA-A4-8098-01 19 49510337 49510337 T C RUVBL2 Missense_Mutation p.S110P 0.34 deleterious(0) probably_damaging(1) TCGA-A4-8098-01 19 7615223 7615223 G A PNPLA6 Silent p.A627A 0.32 TCGA-A4-8098-01 1 110883162 110883162 G T RBM15 Missense_Mutation p.G379C 0.07 deleterious(0) probably_damaging(1) TCGA-A4-8098-01 1 145532515 145532515 G A ITGA10 Missense_Mutation p.R323K 0.38 tolerated(1) benign(0.04) TCGA-A4-8098-01 1 151109386 151109386 C T SEMA6C Silent p.V307V 0.29 TCGA-A4-8098-01 1 153955490 153955490 A G RAB13 Intron 0.33 TCGA-A4-8098-01 1 156877993 156877993 C T PEAR1 Missense_Mutation p.R326C 0.48 deleterious(0) probably_damaging(0.967) TCGA-A4-8098-01 1 160209359 160209359 A G DCAF8 Intron 0.32 TCGA-A4-8098-01 1 167096129 167096129 A G DUSP27 Silent p.T587T 0.46 TCGA-A4-8098-01 1 169100749 169100768 CGTTTTCAGGGACGTTTTGA - ATP1B1 Frame_Shift_Del p.R290Cfs*4 0.37 TCGA-A4-8098-01 1 169806133 169806133 C T C1orf112 Silent p.S535S 0.35 TCGA-A4-8098-01 20 35177592 35177592 C T MYL9 Silent p.N153N 0.29 TCGA-A4-8098-01 20 35219568 35219569 - A TGIF2 Frame_Shift_Ins p.L151Afs*12 0.32 TCGA-A4-8098-01 20 52199400 52199400 T - ZNF217 5'UTR 0.34 TCGA-A4-8098-01 22 26937461 26937461 G A TPST2 Missense_Mutation p.R46W 0.11 deleterious(0.03) benign(0.28) TCGA-A4-8098-01 2 114340578 114340578 T G MIR1302-3 RNA 0.06 TCGA-A4-8098-01 2 158115698 158115699 - T GALNT5 Frame_Shift_Ins p.S369Ffs*7 0.27 TCGA-A4-8098-01 2 238280361 238280361 C T COL6A3 Intron 0.32 TCGA-A4-8098-01 2 26693573 26693574 - C OTOF Frame_Shift_Ins p.E1304Gfs*34 0.22 TCGA-A4-8098-01 2 37365711 37365711 G A EIF2AK2 Silent p.S178S 0.44 TCGA-A4-8098-01 2 89442598 89442598 C T IGKV3-20 5'UTR 0.33 TCGA-A4-8098-01 2 97428127 97428127 A G CNNM4 Missense_Mutation p.E464G 0.39 deleterious(0.01) probably_damaging(0.978) TCGA-A4-8098-01 2 98413329 98413329 T A TMEM131 Silent p.A997A 0.35 TCGA-A4-8098-01 3 15288921 15288921 A G CAPN7 Missense_Mutation p.I721V 0.41 tolerated(0.46) benign(0.002) TCGA-A4-8098-01 3 158262150 158262150 A C RSRC1 3'UTR 0.41 TCGA-A4-8098-01 3 38168151 38168151 T G ACAA1 Missense_Mutation p.I223L 0.40 deleterious(0.01) probably_damaging(0.949) TCGA-A4-8098-01 3 44926858 44926858 G T TGM4 Missense_Mutation p.A21S 0.28 tolerated(0.43) benign(0.193) TCGA-A4-8098-01 3 47127778 47127778 C A SETD2 Missense_Mutation p.K1768N 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-A4-8098-01 4 114232517 114232517 T A ANK2 Missense_Mutation p.N885K 0.51 benign(0.381) TCGA-A4-8098-01 4 122825594 122825594 A C TRPC3 Missense_Mutation p.D712E 0.37 tolerated(0.14) benign(0.117) TCGA-A4-8098-01 4 175898831 175898832 - A ADAM29 Frame_Shift_Ins p.I721Nfs*7 0.44 TCGA-A4-8098-01 4 947053 947053 C G TMEM175 Missense_Mutation p.L180V 0.51 tolerated(0.18) benign(0.003) TCGA-A4-8098-01 4 9784197 9784197 A T DRD5 Missense_Mutation p.R182W 0.39 deleterious(0) possibly_damaging(0.886) TCGA-A4-8098-01 5 10411600 10411600 G A MARCH6 Missense_Mutation p.G616E 0.29 tolerated(0.31) possibly_damaging(0.596) TCGA-A4-8098-01 5 140724210 140724210 A T PCDHGA3 Nonsense_Mutation p.K204* 0.28 TCGA-A4-8098-01 5 68505552 68505552 A - CENPH Frame_Shift_Del p.V225Sfs*22 0.39 TCGA-A4-8098-01 5 74026107 74026107 G T GFM2 Silent p.I568I 0.29 TCGA-A4-8098-01 5 74981182 74981182 G C POC5 Silent p.S419S 0.24 TCGA-A4-8098-01 5 80160742 80160743 - GAAA MSH3 Frame_Shift_Ins p.S1039Rfs*14 0.25 TCGA-A4-8098-01 5 98195710 98195710 T C CHD1 Missense_Mutation p.Y1497C 0.62 deleterious(0) probably_damaging(0.988) TCGA-A4-8098-01 6 29694190 29694190 C T HLA-F Intron 0.37 TCGA-A4-8098-01 6 35923086 35923086 T - SLC26A8 Frame_Shift_Del p.N692Tfs*48 0.31 TCGA-A4-8098-01 6 39895360 39895360 C A MOCS1 5'UTR 0.40 TCGA-A4-8098-01 6 43266249 43266249 G A SLC22A7 Silent p.L51L 0.39 TCGA-A4-8098-01 6 53660212 53660212 A T LRRC1 Missense_Mutation p.E53V 0.28 deleterious(0) possibly_damaging(0.533) TCGA-A4-8098-01 6 74407130 74407130 T C CD109 Missense_Mutation p.F28L 0.42 deleterious(0) possibly_damaging(0.611) TCGA-A4-8098-01 6 79724879 79724879 G A PHIP Missense_Mutation p.L482F 0.14 tolerated(0.1) probably_damaging(0.995) TCGA-A4-8098-01 6 96996102 96996102 C - UFL1 Frame_Shift_Del p.H489Tfs*17 0.23 TCGA-A4-8098-01 7 121651018 121651018 G C PTPRZ1 Missense_Mutation p.E640Q 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-A4-8098-01 7 142008394 142008394 G T TRBV3-1 5'UTR 0.24 TCGA-A4-8098-01 7 142148929 142148929 C T TRBV5-5 Silent p.L114L 0.24 TCGA-A4-8098-01 7 21908512 21908512 G T DNAH11 Missense_Mutation p.G3964V 0.09 probably_damaging(0.984) TCGA-A4-8098-01 7 23306207 23306207 C A GPNMB Missense_Mutation p.H376N 0.36 deleterious(0.04) benign(0.105) TCGA-A4-8098-01 7 28220225 28220225 C T JAZF1 5'UTR 0.47 TCGA-A4-8098-01 7 99971777 99971777 T G PILRA Missense_Mutation p.W59G 0.10 tolerated(0.19) benign(0.023) TCGA-A4-8098-01 8 144942527 144942527 C G EPPK1 Missense_Mutation p.G1632A 0.34 probably_damaging(0.998) TCGA-A4-8098-01 8 71039066 71039067 - AAAC NCOA2 Frame_Shift_Ins p.P1300Vfs*14 0.22 TCGA-A4-8098-01 9 116135765 116135765 C A HDHD3 3'UTR 0.39 TCGA-A4-8098-01 9 123900898 123900898 T G CNTRL Missense_Mutation p.F760V 0.40 benign(0.017) TCGA-A4-8098-01 9 130477806 130477806 C T C9orf117 3'Flank 0.45 TCGA-A4-8098-01 9 130985083 130985083 T A DNM1 Missense_Mutation p.D380E 0.37 deleterious(0.05) benign(0.381) TCGA-A4-8098-01 9 136305499 136305499 G T ADAMTS13 Silent p.G607G 0.30 TCGA-A4-8098-01 X 123211859 123211862 AGAT - STAG2 Frame_Shift_Del p.I910Tfs*20 0.80 TCGA-A4-8098-01 X 153037078 153037078 G C PLXNB3 Missense_Mutation p.E852Q 1.00 tolerated(0.43) benign(0.012) TCGA-A4-8098-01 X 47069022 47069022 T G UBA1 Missense_Mutation p.W647G 0.81 deleterious(0) probably_damaging(1) TCGA-A4-8310-01 10 17157562 17157562 A G CUBN Missense_Mutation p.C210R 0.35 deleterious(0) probably_damaging(1) TCGA-A4-8310-01 10 93252242 93252243 - T HECTD2 Splice_Site p.X478_splice 0.26 TCGA-A4-8310-01 10 94239044 94239044 T C IDE Missense_Mutation p.Y625C 0.41 tolerated(0.07) benign(0.078) TCGA-A4-8310-01 11 111715419 111715419 A G ALG9 Missense_Mutation p.I137T 0.45 deleterious(0.02) benign(0.1) TCGA-A4-8310-01 11 11373529 11373529 C A CSNK2A3 Missense_Mutation p.G380W 0.55 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-A4-8310-01 11 62782340 62782340 T C SLC22A8 Missense_Mutation p.M31V 0.32 deleterious(0.04) benign(0.022) TCGA-A4-8310-01 11 67263727 67263727 T C PITPNM1 Missense_Mutation p.K747E 0.48 deleterious(0.04) benign(0.155) TCGA-A4-8310-01 11 95724681 95724681 T C MAML2 Intron 0.45 TCGA-A4-8310-01 12 58087952 58087952 C T OS9 Missense_Mutation p.A3V 0.27 deleterious(0.02) benign(0.003) TCGA-A4-8310-01 12 6638743 6638743 C A NCAPD2 Silent p.R1213R 0.17 TCGA-A4-8310-01 13 31035448 31035448 T - HMGB1 3'UTR 0.13 TCGA-A4-8310-01 13 47345616 47345616 A G ESD Missense_Mutation p.Y262H 0.23 deleterious(0) probably_damaging(0.998) TCGA-A4-8310-01 13 52511445 52511445 T G ATP7B Missense_Mutation p.I1330L 0.43 deleterious(0.03) possibly_damaging(0.53) TCGA-A4-8310-01 13 99114124 99114125 - C STK24 Frame_Shift_Ins p.S332Qfs*2 0.30 TCGA-A4-8310-01 14 94756790 94756790 C T SERPINA10 Silent p.E47E 0.37 TCGA-A4-8310-01 15 59515313 59515313 C G MYO1E Silent p.L285L 0.15 TCGA-A4-8310-01 15 60849084 60849084 T C RORA Missense_Mutation p.E88G 0.50 tolerated(0.09) benign(0) TCGA-A4-8310-01 16 14755823 14755823 G T BFAR Silent p.L286L 0.57 TCGA-A4-8310-01 16 17202725 17202725 C A XYLT1 Nonsense_Mutation p.E903* 0.06 TCGA-A4-8310-01 16 2035934 2035934 A C GFER Missense_Mutation p.N175H 0.60 deleterious(0) probably_damaging(1) TCGA-A4-8310-01 16 2035967 2035967 T A GFER Missense_Mutation p.F186I 0.59 deleterious(0) probably_damaging(0.996) TCGA-A4-8310-01 16 67982000 67982000 G A SLC12A4 Missense_Mutation p.T606I 0.24 deleterious(0.02) probably_damaging(0.936) TCGA-A4-8310-01 17 21101617 21101617 C T TMEM11 3'UTR 0.36 TCGA-A4-8310-01 17 2595388 2595388 G T CLUH Missense_Mutation p.H1149Q 0.67 tolerated(0.07) probably_damaging(0.916) TCGA-A4-8310-01 17 38612795 38612795 A G IGFBP4 Missense_Mutation p.E246G 0.22 deleterious(0.01) possibly_damaging(0.627) TCGA-A4-8310-01 17 40025023 40025023 T C ACLY Silent p.E1050E 0.23 TCGA-A4-8310-01 17 80202675 80202675 C T CSNK1D Silent p.Q410Q 0.50 TCGA-A4-8310-01 17 8350137 8350137 T C NDEL1 Silent p.S102S 0.50 TCGA-A4-8310-01 19 11132430 11132430 A T SMARCA4 Missense_Mutation p.E882D 0.30 possibly_damaging(0.897) TCGA-A4-8310-01 19 55752903 55752903 A T PPP6R1 Nonsense_Mutation p.L317* 0.27 TCGA-A4-8310-01 1 150634375 150634375 A T GOLPH3L Silent p.G115G 0.34 TCGA-A4-8310-01 1 153915526 153915526 A T DENND4B Missense_Mutation p.L133Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-A4-8310-01 1 16577319 16577320 - TATTAAA FBXO42 Nonsense_Mutation p.S667Ifs*2 0.14 TCGA-A4-8310-01 1 180166465 180166465 C T QSOX1 3'UTR 0.39 TCGA-A4-8310-01 1 190068039 190068039 G C BRINP3 Missense_Mutation p.S470R 0.23 tolerated(0.32) benign(0.067) TCGA-A4-8310-01 1 233190130 233190130 T C PCNXL2 Missense_Mutation p.N1412S 0.45 tolerated(0.07) benign(0.119) TCGA-A4-8310-01 1 23779230 23779231 - GG ASAP3 Frame_Shift_Ins p.L128Pfs*5 0.29 TCGA-A4-8310-01 1 25889193 25889193 A G LDLRAP1 Missense_Mutation p.Q173R 0.42 deleterious(0) benign(0.2) TCGA-A4-8310-01 1 89325567 89325567 T C GTF2B Missense_Mutation p.K178R 0.45 deleterious(0) probably_damaging(0.996) TCGA-A4-8310-01 1 93680444 93680444 C - CCDC18 Frame_Shift_Del p.A600Vfs*9 0.32 TCGA-A4-8310-01 20 31375212 31375212 G A DNMT3B Silent p.P203P 0.60 TCGA-A4-8310-01 20 33330861 33330861 T C NCOA6 Missense_Mutation p.R1067G 0.61 probably_damaging(0.997) TCGA-A4-8310-01 20 34817281 34817281 G T EPB41L1 3'UTR 0.18 TCGA-A4-8310-01 20 47628617 47628617 C A ARFGEF2 Missense_Mutation p.P1305H 0.25 deleterious(0) probably_damaging(0.971) TCGA-A4-8310-01 22 36055131 36055131 C G APOL6 Missense_Mutation p.L174V 0.12 tolerated(0.32) benign(0) TCGA-A4-8310-01 2 133721438 133721438 T G NCKAP5 Missense_Mutation p.K145T 0.37 tolerated(0.08) benign(0.108) TCGA-A4-8310-01 2 135659397 135659398 - T ACMSD Frame_Shift_Ins p.L328Ffs*4 0.41 TCGA-A4-8310-01 2 148677893 148677893 G A ACVR2A Missense_Mutation p.A353T 0.37 tolerated(0.68) benign(0.016) TCGA-A4-8310-01 2 152482148 152482148 A G NEB Missense_Mutation p.L3451S 0.30 probably_damaging(0.986) TCGA-A4-8310-01 2 182778659 182778659 A T SSFA2 Missense_Mutation p.Q525L 0.53 deleterious(0.03) benign(0.024) TCGA-A4-8310-01 2 204732583 204732583 G C CTLA4 5'UTR 0.56 TCGA-A4-8310-01 2 204822592 204822592 A C ICOS Missense_Mutation p.K191T 0.40 tolerated(0.07) benign(0.329) TCGA-A4-8310-01 2 220239739 220239739 G A DNPEP Silent p.L415L 0.39 TCGA-A4-8310-01 2 95540716 95540716 G A TEKT4 Silent p.R303R 0.20 TCGA-A4-8310-01 3 121433805 121433805 G A GOLGB1 Missense_Mutation p.S436F 0.50 possibly_damaging(0.847) TCGA-A4-8310-01 4 120446828 120446828 T A PDE5A Missense_Mutation p.Q552L 0.39 tolerated(0.12) benign(0.306) TCGA-A4-8310-01 4 174254247 174254247 T C HMGB2 Missense_Mutation p.K90R 0.37 deleterious(0.02) benign(0.088) TCGA-A4-8310-01 4 186188140 186188140 G A SNX25 Missense_Mutation p.E144K 0.42 deleterious(0.02) benign(0.278) TCGA-A4-8310-01 4 2746482 2746482 G A TNIP2 Missense_Mutation p.A283V 0.44 tolerated(0.2) benign(0.006) TCGA-A4-8310-01 4 3388125 3388125 C G RGS12 Intron 0.31 TCGA-A4-8310-01 4 52765463 52765463 T C DCUN1D4 Silent p.N178N 0.38 TCGA-A4-8310-01 4 87797562 87797562 T C RP11-397E7.2 RNA 0.24 TCGA-A4-8310-01 5 127641530 127641530 G C FBN2 Missense_Mutation p.L1845V 0.10 deleterious(0.01) probably_damaging(0.93) TCGA-A4-8310-01 5 1323010 1323010 T C CLPTM1L Missense_Mutation p.I433V 0.30 tolerated(0.16) benign(0.007) TCGA-A4-8310-01 5 178987050 178987050 A G RUFY1 Missense_Mutation p.E112G 0.54 deleterious(0) probably_damaging(0.993) TCGA-A4-8310-01 5 32059458 32059458 C A PDZD2 Missense_Mutation p.L772M 0.37 deleterious(0) probably_damaging(1) TCGA-A4-8310-01 5 37181023 37181023 C T C5orf42 Missense_Mutation p.V1836I 0.37 tolerated(0.09) benign(0.015) TCGA-A4-8310-01 5 39390645 39390645 A G DAB2 Silent p.I121I 0.43 TCGA-A4-8310-01 5 39394411 39394411 T C DAB2 Silent p.E4E 0.41 TCGA-A4-8310-01 5 5240027 5240027 C G ADAMTS16 Missense_Mutation p.L838V 0.11 deleterious(0.04) probably_damaging(0.951) TCGA-A4-8310-01 6 153332802 153332802 A T RGS17 Silent p.T180T 0.23 TCGA-A4-8310-01 6 31696435 31696435 C T DDAH2 Missense_Mutation p.V129I 0.41 tolerated(0.15) benign(0.18) TCGA-A4-8310-01 6 52658943 52658943 A G GSTA1 Missense_Mutation p.Y132H 0.33 deleterious(0.03) probably_damaging(1) TCGA-A4-8310-01 6 56489324 56489324 T C DST Intron 0.40 TCGA-A4-8310-01 6 82904254 82904254 T G IBTK Missense_Mutation p.I1094L 0.44 tolerated(0.07) benign(0.213) TCGA-A4-8310-01 6 97562031 97562031 G T KLHL32 Missense_Mutation p.V334L 0.07 tolerated(0.38) benign(0.006) TCGA-A4-8310-01 7 142131666 142131666 A G TRBV5-6 Missense_Mutation p.L30P 0.18 deleterious(0.03) possibly_damaging(0.87) TCGA-A4-8310-01 7 148495672 148495672 T C CUL1 Missense_Mutation p.L680S 0.59 deleterious(0.02) possibly_damaging(0.497) TCGA-A4-8310-01 7 44839397 44839397 G T PPIA Missense_Mutation p.G96C 0.19 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-A4-8310-01 7 90042777 90042777 T A CLDN12 3'UTR 0.65 TCGA-A4-8310-01 8 126085409 126085409 T G KIAA0196 Missense_Mutation p.H379P 0.42 deleterious(0) probably_damaging(0.919) TCGA-A4-8310-01 8 143623373 143623373 G C BAI1 Missense_Mutation p.E1260Q 0.14 tolerated(0.06) possibly_damaging(0.557) TCGA-A4-8310-01 8 17419589 17419589 G A SLC7A2 Silent p.Q587Q 0.46 TCGA-A4-8310-01 8 8654999 8654999 C G MFHAS1 Missense_Mutation p.E1001Q 0.06 tolerated(0.17) benign(0.116) TCGA-A4-8310-01 9 139272475 139272475 G T SNAPC4 Silent p.A1268A 0.33 TCGA-A4-8310-01 9 43626666 43626666 G A SPATA31A6 Missense_Mutation p.T674I 0.48 tolerated(0.24) benign(0.045) TCGA-A4-8310-01 9 78953204 78953204 T C PCSK5 Missense_Mutation p.C1576R 0.35 deleterious(0) possibly_damaging(0.794) TCGA-A4-8310-01 9 86587099 86587099 G T HNRNPK Silent p.P217P 0.47 TCGA-A4-8310-01 X 150844638 150844638 G C PASD1 3'UTR 0.24 TCGA-A4-8310-01 X 39932880 39932880 G T BCOR Silent p.A573A 0.85 TCGA-A4-8310-01 X 40506303 40506303 A G CXorf38 Missense_Mutation p.C103R 0.62 deleterious(0) probably_damaging(1) TCGA-A4-8310-01 X 70444364 70444364 C T GJB1 Silent p.T269T 0.67 TCGA-A4-8311-01 10 45429133 45429133 G C TMEM72 Missense_Mutation p.W86C 0.50 deleterious(0.02) probably_damaging(0.957) TCGA-A4-8311-01 10 73473122 73473122 G C C10orf105 3'UTR 0.50 TCGA-A4-8311-01 10 73473124 73473124 T C C10orf105 3'UTR 0.50 TCGA-A4-8311-01 11 118771983 118771983 C T BCL9L Silent p.Q823Q 0.40 TCGA-A4-8311-01 11 120352127 120352127 G T ARHGEF12 Missense_Mutation p.A1466S 0.33 tolerated_low_confidence(0.11) benign(0.097) TCGA-A4-8311-01 11 1275533 1275533 G C MUC5B Missense_Mutation p.M5143I 0.39 unknown(0) TCGA-A4-8311-01 11 63273900 63273900 G C LGALS12 Silent p.T12T 0.05 TCGA-A4-8311-01 11 65788966 65788966 C T CATSPER1 Splice_Site p.X564_splice 0.43 TCGA-A4-8311-01 12 102164771 102164771 T C GNPTAB Intron 0.38 TCGA-A4-8311-01 12 50847454 50847454 T C LARP4 Missense_Mutation p.L339P 0.49 deleterious(0) probably_damaging(0.968) TCGA-A4-8311-01 12 52401016 52401016 C A GRASP Silent p.L71L 0.55 TCGA-A4-8311-01 13 58208351 58208351 G - PCDH17 Frame_Shift_Del p.A559Rfs*11 0.16 TCGA-A4-8311-01 14 64914978 64914979 AA - MTHFD1 Frame_Shift_Del p.Q741Hfs*2 0.24 TCGA-A4-8311-01 15 52338881 52338881 A G MAPK6 Missense_Mutation p.D75G 0.39 deleterious(0) probably_damaging(0.96) TCGA-A4-8311-01 16 3339974 3339974 T - ZNF263 Frame_Shift_Del p.Y490Tfs*66 0.26 TCGA-A4-8311-01 16 568988 568988 G A RAB11FIP3 Silent p.T562T 0.26 TCGA-A4-8311-01 17 19770705 19770705 T A ULK2 Missense_Mutation p.Y9F 0.56 tolerated(1) benign(0.127) TCGA-A4-8311-01 17 25746859 25746859 T C TBC1D3P5 RNA 0.22 TCGA-A4-8311-01 17 29645740 29645740 A T EVI2A Missense_Mutation p.S121T 0.59 tolerated(0.21) benign(0.011) TCGA-A4-8311-01 17 36099582 36099582 T C HNF1B Silent p.Q131Q 0.63 TCGA-A4-8311-01 17 38926071 38926071 C A KRT26 Nonsense_Mutation p.E302* 0.31 TCGA-A4-8311-01 17 80443514 80443514 C T NARF Silent p.V371V 0.72 TCGA-A4-8311-01 18 29788204 29788204 A T MEP1B Missense_Mutation p.S297C 0.44 deleterious(0) possibly_damaging(0.895) TCGA-A4-8311-01 18 77679262 77679262 A T PQLC1 Missense_Mutation p.L177Q 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-A4-8311-01 19 10206815 10206815 C T ANGPTL6 Missense_Mutation p.R142H 0.38 deleterious(0.02) probably_damaging(0.967) TCGA-A4-8311-01 19 36038383 36038383 C T TMEM147 3'UTR 0.47 TCGA-A4-8311-01 19 49000760 49000760 G A LMTK3 Missense_Mutation p.T1218M 0.09 unknown(0) TCGA-A4-8311-01 19 9077786 9077786 G T MUC16 Silent p.I3220I 0.44 TCGA-A4-8311-01 1 10678475 10678475 G A PEX14 Splice_Site p.X128_splice 0.39 TCGA-A4-8311-01 1 16945460 16945460 C T RP5-1182A14.5 3'Flank 0.06 TCGA-A4-8311-01 1 230372159 230372159 C T GALNT2 Silent p.S178S 0.31 TCGA-A4-8311-01 1 36316582 36316582 C A AGO4 Missense_Mutation p.P802Q 0.07 deleterious(0) probably_damaging(0.995) TCGA-A4-8311-01 1 42921731 42921731 G A ZMYND12 5'UTR 0.38 TCGA-A4-8311-01 1 52961169 52961169 T C ZCCHC11 Missense_Mutation p.Y399C 0.45 deleterious(0) probably_damaging(0.999) TCGA-A4-8311-01 20 32026771 32026771 G A SNTA1 Silent p.D124D 0.31 TCGA-A4-8311-01 20 37153507 37153507 C A RALGAPB Missense_Mutation p.P569H 0.62 deleterious(0.02) benign(0.002) TCGA-A4-8311-01 20 46291842 46291842 T A SULF2 Missense_Mutation p.Y781F 0.51 tolerated(0.09) benign(0.109) TCGA-A4-8311-01 20 47835928 47835928 A C DDX27 Missense_Mutation p.E12D 0.27 tolerated_low_confidence(0.52) benign(0) TCGA-A4-8311-01 21 37505106 37505106 A T CBR3 5'Flank 0.56 TCGA-A4-8311-01 21 44589374 44589374 C G CRYAA Silent p.T55T 0.52 TCGA-A4-8311-01 22 30163434 30163434 G A UQCR10 Missense_Mutation p.R16H 0.47 deleterious(0.05) benign(0.351) TCGA-A4-8311-01 22 30866522 30866522 A T SEC14L3 Missense_Mutation p.D34E 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-A4-8311-01 22 39138452 39138452 G A SUN2 Silent p.L329L 0.41 TCGA-A4-8311-01 2 234638329 234638329 A G UGT1A3 Missense_Mutation p.Q186R 0.48 tolerated(0.2) possibly_damaging(0.677) TCGA-A4-8311-01 2 238990470 238990470 T C SCLY Missense_Mutation p.I210T 0.40 tolerated(0.08) benign(0.052) TCGA-A4-8311-01 2 45616665 45616665 G C SRBD1 Silent p.G924G 0.27 TCGA-A4-8311-01 2 8872073 8872073 A - KIDINS220 Frame_Shift_Del p.S1365Pfs*33 0.27 TCGA-A4-8311-01 2 95815137 95815137 A C ZNF514 Missense_Mutation p.F365V 0.43 tolerated(0.09) benign(0.026) TCGA-A4-8311-01 3 12623848 12623848 T C MKRN2 3'UTR 0.35 TCGA-A4-8311-01 3 140979087 140979087 C A ACPL2 Missense_Mutation p.L24M 0.48 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-A4-8311-01 3 15751227 15751227 T C ANKRD28 Missense_Mutation p.N422D 0.57 tolerated(0.37) benign(0.026) TCGA-A4-8311-01 3 45780273 45780273 G A SACM1L Missense_Mutation p.D493N 0.55 deleterious(0) probably_damaging(0.927) TCGA-A4-8311-01 4 2824663 2824664 GC T SH3BP2 Frame_Shift_Del p.W103Cfs*30 0.33 TCGA-A4-8311-01 4 2934166 2934166 A G MFSD10 Missense_Mutation p.M202T 0.40 tolerated(1) benign(0.002) TCGA-A4-8311-01 4 437056 437056 A G ZNF721 Silent p.S400S 0.43 TCGA-A4-8311-01 5 101834204 101834204 C A SLCO6A1 Silent p.L115L 0.47 TCGA-A4-8311-01 5 135228124 135228124 T C IL9 Missense_Mutation p.I131V 0.44 tolerated(0.57) benign(0) TCGA-A4-8311-01 5 138723416 138723416 A T MZB1 3'UTR 0.40 TCGA-A4-8311-01 5 139947279 139947279 T A SLC35A4 Silent p.A175A 0.46 TCGA-A4-8311-01 5 33944736 33944736 A G SLC45A2 3'UTR 0.40 TCGA-A4-8311-01 6 41129014 41129014 C T TREM2 Silent p.V126V 0.34 TCGA-A4-8311-01 7 134873248 134873248 C T WDR91 Silent p.E606E 0.21 TCGA-A4-8311-01 7 27565778 27565778 G T HIBADH 3'UTR 0.41 TCGA-A4-8311-01 7 27565781 27565781 G T HIBADH 3'UTR 0.36 TCGA-A4-8311-01 7 75617074 75617074 C T POR 3'Flank 0.24 TCGA-A4-8311-01 7 77648617 77648617 C T MAGI2 3'UTR 0.28 TCGA-A4-8311-01 8 120816142 120816142 G A TAF2 Missense_Mutation p.S179F 0.46 deleterious(0) probably_damaging(0.986) TCGA-A4-8311-01 8 48744423 48744423 G T PRKDC Silent p.L2738L 0.39 TCGA-A4-8311-01 8 67577113 67577113 A G VCPIP1 Missense_Mutation p.L694P 0.38 deleterious(0) probably_damaging(0.987) TCGA-A4-8311-01 9 117552848 117552848 G A TNFSF15 Missense_Mutation p.L214F 0.43 deleterious(0.01) probably_damaging(1) TCGA-A4-8311-01 9 139008421 139008421 C T C9orf69 Missense_Mutation p.R109H 0.50 tolerated(0.25) possibly_damaging(0.566) TCGA-A4-8311-01 X 122756985 122756985 T A THOC2 Missense_Mutation p.K1218I 0.90 tolerated(0.06) possibly_damaging(0.888) TCGA-A4-8311-01 X 15682860 15682860 A G TMEM27 Silent p.H13H 0.76 TCGA-A4-8312-01 11 102826393 102826393 C A MMP13 Missense_Mutation p.W14C 0.09 tolerated(0.16) benign(0.155) TCGA-A4-8312-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.52 deleterious(0) benign(0.361) TCGA-A4-8312-01 12 2614092 2614092 G T CACNA1C Missense_Mutation p.V400F 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-A4-8312-01 12 32491723 32491724 AT - BICD1 Frame_Shift_Del p.Q858Hfs*7 0.28 TCGA-A4-8312-01 13 29599704 29599704 C T MTUS2 Missense_Mutation p.S300L 0.27 tolerated(0.14) benign(0.002) TCGA-A4-8312-01 14 70527578 70527578 C T SLC8A3 Silent p.P621P 0.31 TCGA-A4-8312-01 14 92470654 92470654 T A TRIP11 Missense_Mutation p.E1222D 0.46 deleterious(0.05) benign(0.057) TCGA-A4-8312-01 15 25972305 25972305 A T ATP10A Splice_Site p.X283_splice 0.42 TCGA-A4-8312-01 16 2580428 2580428 C T AMDHD2 Nonsense_Mutation p.R485* 0.09 TCGA-A4-8312-01 16 30718524 30718524 G T SRCAP Silent p.R109R 0.38 TCGA-A4-8312-01 17 34261844 34261844 C T LYZL6 Missense_Mutation p.G135S 0.25 deleterious(0) probably_damaging(0.926) TCGA-A4-8312-01 17 3844534 3844534 T C ATP2A3 Missense_Mutation p.I611V 0.05 tolerated(0.24) benign(0.033) TCGA-A4-8312-01 17 48600413 48600413 A T MYCBPAP Silent p.R500R 0.38 TCGA-A4-8312-01 1 167097085 167097085 A C DUSP27 Missense_Mutation p.K906T 0.11 deleterious(0.03) possibly_damaging(0.701) TCGA-A4-8312-01 2 217279802 217279802 C G SMARCAL1 Silent p.P125P 0.40 TCGA-A4-8312-01 6 36842542 36842542 C T PPIL1 Missense_Mutation p.A3T 0.12 tolerated_low_confidence(0.08) benign(0.001) TCGA-A4-8312-01 9 116840419 116840419 G A AMBP Missense_Mutation p.T24M 0.42 tolerated(0.15) benign(0.032) TCGA-A4-8312-01 9 123527053 123527053 G A FBXW2 Silent p.D383D 0.08 TCGA-A4-8515-01 11 113103986 113103986 G T NCAM1 Missense_Mutation p.W596L 0.38 tolerated(0.09) probably_damaging(0.994) TCGA-A4-8515-01 11 125765906 125765922 TCTCTTCAATGGTATTA - PUS3 Frame_Shift_Del p.N86Kfs*4 0.46 TCGA-A4-8515-01 11 47745663 47745663 G T FNBP4 Missense_Mutation p.T794K 0.39 tolerated(0.05) benign(0.081) TCGA-A4-8515-01 11 47745665 47745665 A G FNBP4 Silent p.A793A 0.40 TCGA-A4-8515-01 11 48142761 48142761 A G PTPRJ Missense_Mutation p.T187A 0.29 tolerated(0.58) benign(0.14) TCGA-A4-8515-01 12 11461501 11461501 C A PRB4 Missense_Mutation p.G139V 0.42 deleterious_low_confidence(0.01) unknown(0) TCGA-A4-8515-01 12 124106234 124106234 G A EIF2B1 3'UTR 0.41 TCGA-A4-8515-01 12 6886460 6886460 C G LAG3 Missense_Mutation p.S363C 0.41 deleterious(0.02) possibly_damaging(0.781) TCGA-A4-8515-01 12 83290130 83290130 G A TMTC2 Silent p.L396L 0.47 TCGA-A4-8515-01 12 92537939 92537939 T C BTG1 Missense_Mutation p.S145G 0.49 tolerated(0.27) benign(0.008) TCGA-A4-8515-01 12 94976205 94976205 T A TMCC3 Missense_Mutation p.K63M 0.41 deleterious(0) probably_damaging(1) TCGA-A4-8515-01 13 95886864 95886864 C A ABCC4 Missense_Mutation p.K177N 0.44 deleterious(0) probably_damaging(0.981) TCGA-A4-8515-01 13 95886865 95886865 T G ABCC4 Missense_Mutation p.K177T 0.43 deleterious(0) probably_damaging(0.981) TCGA-A4-8515-01 14 99958984 99958984 C - CCNK 5'UTR 0.48 TCGA-A4-8515-01 15 66031104 66031104 A G DENND4A Silent p.N247N 0.42 TCGA-A4-8515-01 15 72432229 72432229 G - SENP8 Frame_Shift_Del p.A89Pfs*44 0.33 TCGA-A4-8515-01 15 74032301 74032301 A T C15orf59 Missense_Mutation p.L280Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-A4-8515-01 16 20682868 20682868 G T ACSM1 Missense_Mutation p.P246H 0.33 tolerated(0.55) benign(0.009) TCGA-A4-8515-01 16 71768532 71768533 - A AP1G1 Frame_Shift_Ins p.K786* 0.41 TCGA-A4-8515-01 17 10433386 10433386 G A MYH2 Silent p.A901A 0.33 TCGA-A4-8515-01 17 1633711 1633711 G A WDR81 Silent p.K1235K 0.21 TCGA-A4-8515-01 17 37188047 37188047 C A CTD-2206N4.2 5'Flank 0.16 TCGA-A4-8515-01 17 3924472 3924472 T - ZZEF1 Frame_Shift_Del p.K2452Sfs*17 0.27 TCGA-A4-8515-01 17 4445915 4445915 T C MYBBP1A Missense_Mutation p.H1005R 0.61 deleterious(0.05) possibly_damaging(0.481) TCGA-A4-8515-01 17 57078973 57078974 TG - TRIM37 Frame_Shift_Del p.Q933Afs*4 0.09 TCGA-A4-8515-01 17 61561775 61561775 G C ACE Silent p.P598P 0.44 TCGA-A4-8515-01 17 7948982 7948982 C T ALOX15B Missense_Mutation p.P393L 0.47 deleterious(0) probably_damaging(1) TCGA-A4-8515-01 18 2666935 2666935 C - SMCHD1 Frame_Shift_Del p.A110Vfs*39 0.27 TCGA-A4-8515-01 18 28660278 28660278 A C DSC2 Missense_Mutation p.I435S 0.42 deleterious(0) probably_damaging(0.991) TCGA-A4-8515-01 18 5406855 5406855 T C EPB41L3 Missense_Mutation p.K757R 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-A4-8515-01 19 10403449 10403449 A G ICAM5 Missense_Mutation p.N375D 0.13 tolerated(0.5) benign(0.002) TCGA-A4-8515-01 1 109649721 109649721 G A C1orf194 Silent p.F62F 0.44 TCGA-A4-8515-01 1 151314667 151314667 G T RFX5 Missense_Mutation p.P616T 0.49 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-A4-8515-01 1 173772191 173772191 G T CENPL Missense_Mutation p.F337L 0.09 deleterious(0) probably_damaging(0.999) TCGA-A4-8515-01 1 216017693 216017693 A T USH2A Missense_Mutation p.N3067K 0.32 benign(0.015) TCGA-A4-8515-01 1 232650317 232650317 G A SIPA1L2 Missense_Mutation p.R257C 0.37 tolerated(0.15) possibly_damaging(0.556) TCGA-A4-8515-01 1 248616864 248616864 G T OR2T2 Missense_Mutation p.A256S 0.11 tolerated(0.08) probably_damaging(0.998) TCGA-A4-8515-01 1 27107195 27107195 C A ARID1A Nonsense_Mutation p.S2269* 0.38 TCGA-A4-8515-01 1 32670343 32670343 T G CCDC28B Intron 0.45 TCGA-A4-8515-01 20 34215310 34215310 G T CPNE1 Nonsense_Mutation p.Y381* 0.45 TCGA-A4-8515-01 20 34288799 34288799 A G ROMO1 Missense_Mutation p.M71V 0.40 deleterious(0) benign(0.089) TCGA-A4-8515-01 2 106498221 106498221 A G NCK2 Missense_Mutation p.M222V 0.41 deleterious(0.01) probably_damaging(0.976) TCGA-A4-8515-01 2 227872789 227872789 A G COL4A4 Missense_Mutation p.I1585T 0.34 unknown(0) TCGA-A4-8515-01 2 29297095 29297096 - A C2orf71 Frame_Shift_Ins p.N12Kfs*26 0.36 TCGA-A4-8515-01 2 64323347 64323347 G A PELI1 Missense_Mutation p.S201F 0.36 deleterious(0) possibly_damaging(0.866) TCGA-A4-8515-01 3 12957106 12957106 C T IQSEC1 Silent p.V730V 0.24 TCGA-A4-8515-01 3 170020936 170020936 A T PRKCI 3'UTR 0.53 TCGA-A4-8515-01 3 187009418 187009418 C G MASP1 Translation_Start_Site p.M1? 0.19 tolerated(0.08) benign(0.004) TCGA-A4-8515-01 3 189586503 189586503 G A TP63 Missense_Mutation p.R376H 0.64 deleterious(0.03) benign(0) TCGA-A4-8515-01 3 195706657 195706657 G A SDHAP1 RNA 0.20 TCGA-A4-8515-01 3 37369907 37369907 A G GOLGA4 Silent p.K2002K 0.04 TCGA-A4-8515-01 3 8955405 8955406 - TG RAD18 Splice_Site p.X297_splice 0.58 TCGA-A4-8515-01 4 186380257 186380257 C A CCDC110 Missense_Mutation p.S495I 0.38 tolerated(0.96) benign(0.001) TCGA-A4-8515-01 4 186545386 186545386 G T SORBS2 Missense_Mutation p.F495L 0.45 tolerated(0.55) benign(0.008) TCGA-A4-8515-01 4 39515753 39515753 A G UGDH Missense_Mutation p.S72P 0.40 deleterious(0.01) benign(0.263) TCGA-A4-8515-01 5 7886796 7886796 A G MTRR Missense_Mutation p.I403V 0.05 deleterious(0.04) possibly_damaging(0.851) TCGA-A4-8515-01 6 127611395 127611395 T C ECHDC1 Silent p.R181R 0.39 TCGA-A4-8515-01 6 159401839 159401839 C T RSPH3 Missense_Mutation p.D418N 0.38 tolerated(0.19) benign(0.049) TCGA-A4-8515-01 6 31323288 31323288 G - HLA-B Frame_Shift_Del p.P234Lfs*6 0.19 TCGA-A4-8515-01 6 82461655 82461655 C A FAM46A Missense_Mutation p.W68C 0.49 deleterious(0.05) probably_damaging(1) TCGA-A4-8515-01 6 90411386 90411386 T A MDN1 Missense_Mutation p.E2773V 0.47 probably_damaging(0.968) TCGA-A4-8515-01 7 100404084 100404104 CATCACCTCCCACATCACAAT - EPHB4 In_Frame_Del p.I808_M814del 0.12 TCGA-A4-8515-01 7 100609824 100609824 A T MUC3A Nonsense_Mutation p.K822* 0.15 TCGA-A4-8515-01 7 128470547 128470547 C T FLNC 5'UTR 0.78 TCGA-A4-8515-01 7 18625059 18625059 C T HDAC9 Nonsense_Mutation p.Q60* 0.06 TCGA-A4-8515-01 7 35707133 35707133 A G HERPUD2 Silent p.G135G 0.62 TCGA-A4-8515-01 7 6639468 6639468 A T C7orf26 Missense_Mutation p.I197F 0.57 deleterious(0.03) benign(0.402) TCGA-A4-8515-01 8 52733204 52733204 C G PCMTD1 Missense_Mutation p.D261H 0.04 tolerated(0.08) benign(0.001) TCGA-A4-8515-01 9 100862406 100862406 A - TRIM14 Frame_Shift_Del p.F115Sfs*44 0.32 TCGA-A4-8515-01 9 128117063 128117063 G A GAPVD1 Missense_Mutation p.V1261I 0.39 tolerated(0.11) benign(0.211) TCGA-A4-8515-01 9 140508526 140508526 C A ARRDC1 Missense_Mutation p.L160M 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-A4-8515-01 9 35560975 35560975 G A RUSC2 Silent p.L1410L 0.45 TCGA-A4-8515-01 X 8433850 8433850 C T VCX3B Missense_Mutation p.A56V 0.18 deleterious_low_confidence(0.03) unknown(0) TCGA-A4-8517-01 10 104139057 104139057 A G GBF1 Missense_Mutation p.H1503R 0.10 deleterious(0) possibly_damaging(0.822) TCGA-A4-8517-01 10 12226925 12226925 C G NUDT5 Missense_Mutation p.E32Q 0.44 tolerated(0.13) possibly_damaging(0.535) TCGA-A4-8517-01 10 14896200 14896200 T A HSPA14 Missense_Mutation p.S271T 0.14 tolerated(0.46) benign(0.015) TCGA-A4-8517-01 10 61112192 61112192 C A FAM13C Silent p.L54L 0.36 TCGA-A4-8517-01 10 6157469 6157469 T C RBM17 Missense_Mutation p.F386L 0.45 deleterious(0) probably_damaging(0.949) TCGA-A4-8517-01 10 75056667 75056667 T G TTC18 Intron 0.25 TCGA-A4-8517-01 10 93999658 93999658 A C CPEB3 Silent p.T150T 0.29 TCGA-A4-8517-01 10 98145849 98145849 G C TLL2 Missense_Mutation p.S659C 0.21 tolerated(0.05) possibly_damaging(0.874) TCGA-A4-8517-01 11 114450961 114450961 C T NXPE4 Missense_Mutation p.S331N 0.38 tolerated(0.82) benign(0.006) TCGA-A4-8517-01 11 117308640 117308640 T C DSCAML1 Missense_Mutation p.E1528G 0.44 deleterious(0.01) benign(0.207) TCGA-A4-8517-01 11 56237295 56237295 G A OR5M3 Missense_Mutation p.R227C 0.05 tolerated(0.07) benign(0.047) TCGA-A4-8517-01 11 56949791 56949791 A T LRRC55 Missense_Mutation p.N142Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-A4-8517-01 11 56949792 56949792 A C LRRC55 Missense_Mutation p.N142T 0.40 deleterious(0) probably_damaging(0.991) TCGA-A4-8517-01 11 60975055 60975055 A G PGA3 Missense_Mutation p.M142V 0.20 deleterious(0.04) possibly_damaging(0.475) TCGA-A4-8517-01 11 66366974 66366974 G A CCS Missense_Mutation p.V99M 0.47 deleterious(0) probably_damaging(0.95) TCGA-A4-8517-01 11 67787234 67787234 A T ALDH3B1 Silent p.L176L 0.41 TCGA-A4-8517-01 11 87908439 87908439 G A RAB38 Silent p.Y38Y 0.37 TCGA-A4-8517-01 12 49334777 49334777 T C ARF3 Silent p.L34L 0.33 TCGA-A4-8517-01 12 49951572 49951572 G A KCNH3 Missense_Mutation p.A1030T 0.05 tolerated_low_confidence(0.07) benign(0) TCGA-A4-8517-01 13 45010883 45010883 T A TSC22D1 Intron 0.49 TCGA-A4-8517-01 14 21870158 21870158 G - CHD8 Frame_Shift_Del p.I1341Sfs*43 0.33 TCGA-A4-8517-01 14 23451577 23451577 G A AJUBA 5'UTR 0.08 TCGA-A4-8517-01 14 64633956 64633956 T A SYNE2 Missense_Mutation p.H5537Q 0.28 possibly_damaging(0.795) TCGA-A4-8517-01 14 92349359 92349359 G T FBLN5 Silent p.G267G 0.43 TCGA-A4-8517-01 15 42462024 42462024 G T VPS39 Silent p.P377P 0.45 TCGA-A4-8517-01 15 48414420 48414420 T G SLC24A5 Intron 0.38 TCGA-A4-8517-01 15 76726602 76726603 - TA SCAPER Frame_Shift_Ins p.K1043Ifs*8 0.27 TCGA-A4-8517-01 15 78807316 78807316 G A HYKK Missense_Mutation p.G115D 0.30 deleterious(0.02) possibly_damaging(0.548) TCGA-A4-8517-01 15 89865055 89865055 T C POLG Missense_Mutation p.Y837C 0.05 tolerated(0.09) possibly_damaging(0.656) TCGA-A4-8517-01 16 18856931 18856931 C - SMG1 Frame_Shift_Del p.M2014* 0.40 TCGA-A4-8517-01 16 67208730 67208730 G A NOL3 Silent p.R164R 0.15 TCGA-A4-8517-01 16 80654830 80654830 G T CDYL2 Silent p.I279I 0.23 TCGA-A4-8517-01 16 84228709 84228709 G A ADAD2 Silent p.A286A 0.25 TCGA-A4-8517-01 17 7759061 7759061 G A TMEM88 3'UTR 0.38 TCGA-A4-8517-01 17 80405459 80405459 C T C17orf62 Missense_Mutation p.G42R 0.25 tolerated(0.26) possibly_damaging(0.894) TCGA-A4-8517-01 19 12576137 12576137 T G ZNF709 Missense_Mutation p.E200A 0.37 tolerated(0.33) probably_damaging(0.996) TCGA-A4-8517-01 19 14581037 14581037 G T PKN1 Missense_Mutation p.V792L 0.10 deleterious(0) probably_damaging(0.971) TCGA-A4-8517-01 19 15303027 15303027 G T NOTCH3 Silent p.R141R 0.33 TCGA-A4-8517-01 19 3192650 3192650 G A NCLN Missense_Mutation p.V123I 0.45 tolerated(0.27) benign(0.002) TCGA-A4-8517-01 19 36515358 36515358 A C CLIP3 Missense_Mutation p.N286K 0.43 tolerated(1) benign(0.006) TCGA-A4-8517-01 19 3653310 3653310 T - PIP5K1C Frame_Shift_Del p.K300Rfs*84 0.28 TCGA-A4-8517-01 19 59063432 59063433 - T CHMP2A Frame_Shift_Ins p.E157Rfs*5 0.26 TCGA-A4-8517-01 1 107600260 107600260 C - PRMT6 Frame_Shift_Del p.T309Pfs*17 0.36 TCGA-A4-8517-01 1 110561173 110561173 G A AHCYL1 Splice_Site p.X407_splice 0.44 TCGA-A4-8517-01 1 145592731 145592731 G - POLR3C Frame_Shift_Del p.L522Cfs*10 0.26 TCGA-A4-8517-01 1 149897857 149897857 G A SF3B4 Missense_Mutation p.P262S 0.07 tolerated(0.16) unknown(0) TCGA-A4-8517-01 1 152188167 152188167 A G HRNR Missense_Mutation p.Y1980H 0.06 unknown(0) TCGA-A4-8517-01 1 160305059 160305059 A G COPA Silent p.D94D 0.46 TCGA-A4-8517-01 1 197522038 197522038 T C DENND1B 3'UTR 0.39 TCGA-A4-8517-01 1 31347253 31347253 G T SDC3 Silent p.P351P 0.32 TCGA-A4-8517-01 1 40211152 40211152 G A PPIE Missense_Mutation p.V164I 0.53 tolerated(0.27) benign(0.005) TCGA-A4-8517-01 1 40536545 40536545 C T CAP1 Missense_Mutation p.T413I 0.38 deleterious(0) probably_damaging(1) TCGA-A4-8517-01 1 40961061 40961061 G T ZFP69 Missense_Mutation p.C304F 0.32 deleterious(0) possibly_damaging(0.873) TCGA-A4-8517-01 1 51767185 51767185 C T TTC39A Intron 0.75 TCGA-A4-8517-01 1 52256297 52256297 C A NRD1 Nonsense_Mutation p.E1094* 0.44 TCGA-A4-8517-01 20 25271238 25271238 G A PYGB Missense_Mutation p.R650H 0.59 deleterious(0.02) probably_damaging(0.989) TCGA-A4-8517-01 20 30897803 30897803 G A KIF3B Missense_Mutation p.E75K 0.56 tolerated(0.07) benign(0.062) TCGA-A4-8517-01 20 35800375 35800375 A T MROH8 Missense_Mutation p.S182R 0.53 tolerated_low_confidence(0.07) benign(0.109) TCGA-A4-8517-01 20 43959164 43959164 C A SDC4 Missense_Mutation p.G96V 0.27 tolerated(0.25) benign(0.443) TCGA-A4-8517-01 20 47628619 47628619 C A ARFGEF2 Silent p.R1306R 0.56 TCGA-A4-8517-01 20 58569544 58569544 G C CDH26 Missense_Mutation p.G556R 0.31 deleterious(0) probably_damaging(0.976) TCGA-A4-8517-01 21 22849618 22849618 A G NCAM2 Missense_Mutation p.K635E 0.34 tolerated(0.38) probably_damaging(0.999) TCGA-A4-8517-01 22 19423455 19423455 G T MRPL40 Missense_Mutation p.K197N 0.36 deleterious(0) probably_damaging(0.989) TCGA-A4-8517-01 22 20796432 20796432 G C KLHL22 Silent p.A611A 0.38 TCGA-A4-8517-01 22 46765598 46765598 A G CELSR1 Silent p.A2621A 0.36 TCGA-A4-8517-01 22 50926723 50926723 G T MIOX Silent p.G120G 0.41 TCGA-A4-8517-01 2 109380509 109380509 T G RANBP2 Missense_Mutation p.F1172V 0.38 deleterious(0) benign(0.149) TCGA-A4-8517-01 2 124783169 124783169 C T CNTNAP5 5'UTR 0.47 TCGA-A4-8517-01 2 141816463 141816463 G C LRP1B Missense_Mutation p.T466S 0.43 benign(0.075) TCGA-A4-8517-01 2 141816476 141816476 A T LRP1B Missense_Mutation p.Y462N 0.32 possibly_damaging(0.485) TCGA-A4-8517-01 2 206640967 206640967 C A NRP2 Intron 0.38 TCGA-A4-8517-01 2 230861514 230861516 AAT - FBXO36 In_Frame_Del p.N85del 0.38 TCGA-A4-8517-01 2 27373231 27373231 A T TCF23 Nonsense_Mutation p.K155* 0.41 TCGA-A4-8517-01 2 54852000 54852000 C T SPTBN1 Silent p.L414L 0.18 TCGA-A4-8517-01 2 9515054 9515054 T C ASAP2 Missense_Mutation p.I576T 0.40 deleterious(0) possibly_damaging(0.662) TCGA-A4-8517-01 3 134267996 134267996 A - CEP63 Frame_Shift_Del p.E387Dfs*9 0.21 TCGA-A4-8517-01 3 179076735 179076735 A C MFN1 Missense_Mutation p.D119A 0.36 deleterious(0.02) probably_damaging(0.938) TCGA-A4-8517-01 3 179426711 179426711 C A USP13 Silent p.A257A 0.44 TCGA-A4-8517-01 3 194062198 194062198 G T CPN2 Missense_Mutation p.Q412K 0.39 tolerated(0.9) benign(0.055) TCGA-A4-8517-01 3 50357591 50357591 C T HYAL2 Silent p.R110R 0.33 TCGA-A4-8517-01 3 53808687 53808687 C T CACNA1D Missense_Mutation p.A1415V 0.04 deleterious(0.02) possibly_damaging(0.769) TCGA-A4-8517-01 4 122724130 122724130 G A EXOSC9 Silent p.K114K 0.45 TCGA-A4-8517-01 4 185719656 185719656 T C ACSL1 Intron 0.45 TCGA-A4-8517-01 4 71064324 71064324 T A ODAM Missense_Mutation p.M135K 0.07 deleterious(0.01) benign(0.021) TCGA-A4-8517-01 4 72429564 72429564 A G SLC4A4 Intron 0.36 TCGA-A4-8517-01 4 77661360 77661360 G - SHROOM3 Frame_Shift_Del p.E679Sfs*2 0.34 TCGA-A4-8517-01 5 140724915 140724915 A C PCDHGA3 Missense_Mutation p.T439P 0.17 tolerated_low_confidence(0.09) benign(0.024) TCGA-A4-8517-01 5 140724920 140724920 G T PCDHGA3 Silent p.L440L 0.17 TCGA-A4-8517-01 5 150444534 150444534 C G TNIP1 Silent p.G41G 0.35 TCGA-A4-8517-01 5 167833322 167833322 A C WWC1 Missense_Mutation p.D237A 0.42 deleterious(0) probably_damaging(0.976) TCGA-A4-8517-01 5 70813231 70813231 T A BDP1 Missense_Mutation p.V1648E 0.42 tolerated(0.22) possibly_damaging(0.506) TCGA-A4-8517-01 5 82836395 82836395 A T VCAN Missense_Mutation p.R2525W 0.35 deleterious(0.03) benign(0.01) TCGA-A4-8517-01 5 86690787 86690787 A - CCNH Intron 0.33 TCGA-A4-8517-01 5 94727057 94727057 G T FAM81B 5'UTR 0.46 TCGA-A4-8517-01 6 151117019 151117019 T G PLEKHG1 Missense_Mutation p.Y204D 0.42 deleterious(0) probably_damaging(0.999) TCGA-A4-8517-01 6 168349109 168349109 A T MLLT4 Missense_Mutation p.E1254V 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.522) TCGA-A4-8517-01 6 30865203 30865203 C A DDR1 Missense_Mutation p.P688Q 0.38 deleterious(0) benign(0.027) TCGA-A4-8517-01 6 31632033 31632035 TTC - GPANK1 In_Frame_Del p.R74del 0.40 TCGA-A4-8517-01 6 33365943 33365943 G T KIFC1 Missense_Mutation p.K50N 0.31 deleterious(0.01) possibly_damaging(0.701) TCGA-A4-8517-01 6 43153712 43153712 T C CUL9 Missense_Mutation p.F257S 0.38 deleterious(0) probably_damaging(0.99) TCGA-A4-8517-01 6 43153713 43153713 C T CUL9 Silent p.F257F 0.41 TCGA-A4-8517-01 7 149502569 149502569 C A SSPO RNA 0.18 TCGA-A4-8517-01 7 156963038 156963038 T A UBE3C Nonsense_Mutation p.L79* 0.28 TCGA-A4-8517-01 7 44747234 44747234 T C OGDH Silent p.N950N 0.28 TCGA-A4-8517-01 7 73932549 73932549 G A GTF2IRD1 Missense_Mutation p.G200R 0.07 deleterious(0) probably_damaging(0.995) TCGA-A4-8517-01 8 28991587 28991587 C T KIF13B Silent p.P918P 0.35 TCGA-A4-8517-01 9 125330116 125330116 C T OR1L8 Missense_Mutation p.C214Y 0.48 deleterious(0.04) benign(0.25) TCGA-A4-8517-01 9 32467853 32467868 AGGTGGCAATCAGAAT - DDX58 Frame_Shift_Del p.I693Qfs*27 0.41 TCGA-A4-8517-01 9 72333519 72333519 A G PTAR1 Intron 0.42 TCGA-A4-8517-01 9 94821490 94821490 G A SPTLC1 Silent p.L221L 0.40 TCGA-A4-8517-01 X 10094307 10094307 C - WWC3 Frame_Shift_Del p.Y689* 0.13 TCGA-A4-8517-01 X 108780250 108780250 G A NXT2 Silent p.L60L 0.43 TCGA-A4-8517-01 X 122755201 122755201 T A THOC2 Missense_Mutation p.K1341N 0.85 tolerated(0.09) probably_damaging(0.997) TCGA-A4-8630-01 10 104158555 104158555 G A NFKB2 Missense_Mutation p.G351R 0.45 tolerated(0.11) benign(0.225) TCGA-A4-8630-01 11 133402248 133402248 G C OPCML 5'UTR 0.36 TCGA-A4-8630-01 11 22696335 22696335 T C GAS2 Intron 0.29 TCGA-A4-8630-01 11 34119411 34119411 C T CAPRIN1 Intron 0.43 TCGA-A4-8630-01 11 406346 406346 T C SIGIRR Intron 0.44 TCGA-A4-8630-01 11 88045694 88045694 G C CTSC Missense_Mutation p.T116S 0.40 tolerated(1) benign(0) TCGA-A4-8630-01 12 51102296 51102296 C A DIP2B Missense_Mutation p.P867H 0.57 deleterious(0.03) probably_damaging(0.954) TCGA-A4-8630-01 12 51450186 51450186 G A LETMD1 Silent p.L285L 0.43 TCGA-A4-8630-01 12 55714436 55714436 A G OR6C1 Missense_Mutation p.D18G 0.34 deleterious_low_confidence(0) benign(0.048) TCGA-A4-8630-01 13 61034625 61034625 G A TDRD3 Missense_Mutation p.G102S 0.20 deleterious(0) probably_damaging(1) TCGA-A4-8630-01 14 21821646 21821648 CCT - SUPT16H Splice_Site p.X999_splice 0.39 TCGA-A4-8630-01 14 36104756 36104756 G C RALGAPA1 Missense_Mutation p.P1403A 0.45 deleterious(0) probably_damaging(0.999) TCGA-A4-8630-01 15 45410080 45410080 C A DUOXA2 Missense_Mutation p.D312E 0.41 deleterious_low_confidence(0.04) benign(0.003) TCGA-A4-8630-01 15 72172105 72172105 T C MYO9A Missense_Mutation p.E1899G 0.46 deleterious(0) possibly_damaging(0.881) TCGA-A4-8630-01 16 1604905 1604905 A T TMEM204 Missense_Mutation p.I187F 0.28 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-A4-8630-01 16 23387095 23387095 C T SCNN1B Missense_Mutation p.R397C 0.23 deleterious(0) possibly_damaging(0.579) TCGA-A4-8630-01 16 67236622 67236622 T A ELMO3 Silent p.T550T 0.63 TCGA-A4-8630-01 16 90023966 90023966 G A DEF8 Silent p.E151E 0.31 TCGA-A4-8630-01 17 17701717 17701717 G A RAI1 Missense_Mutation p.A1819T 0.67 tolerated(1) benign(0.001) TCGA-A4-8630-01 17 19566808 19566808 A G ALDH3A2 Missense_Mutation p.H368R 0.44 tolerated(0.09) benign(0) TCGA-A4-8630-01 17 34171754 34171754 G A TAF15 Missense_Mutation p.G484D 0.47 deleterious_low_confidence(0) unknown(0) TCGA-A4-8630-01 17 65074431 65074431 G A HELZ Silent p.L1922L 0.29 TCGA-A4-8630-01 17 6703554 6703554 C A TEKT1 Splice_Site p.X350_splice 0.29 TCGA-A4-8630-01 18 2718194 2718194 C T SMCHD1 Nonsense_Mutation p.Q767* 0.40 TCGA-A4-8630-01 18 52921812 52921812 A G TCF4 Silent p.I524I 0.41 TCGA-A4-8630-01 19 20044771 20044771 C T ZNF93 Missense_Mutation p.T336I 0.40 deleterious(0.01) possibly_damaging(0.654) TCGA-A4-8630-01 19 37642652 37642652 G T ZNF585A Missense_Mutation p.P662T 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-A4-8630-01 19 37642653 37642653 C A ZNF585A Missense_Mutation p.K661N 0.45 deleterious(0.01) probably_damaging(0.963) TCGA-A4-8630-01 19 49184127 49184127 C T RN7SL345P 5'Flank 0.47 TCGA-A4-8630-01 19 9056220 9056220 G C MUC16 Missense_Mutation p.T10409R 0.38 benign(0.027) TCGA-A4-8630-01 1 117618867 117618867 C G TTF2 Missense_Mutation p.I447M 0.37 deleterious(0) possibly_damaging(0.764) TCGA-A4-8630-01 1 1480325 1480325 C T SSU72 Silent p.R94R 0.36 TCGA-A4-8630-01 1 153520171 153520171 G C S100A3 Missense_Mutation p.P98R 0.48 deleterious(0) possibly_damaging(0.66) TCGA-A4-8630-01 1 156221203 156221203 G - SMG5 Frame_Shift_Del p.A940Efs*10 0.26 TCGA-A4-8630-01 1 156706431 156706431 T C RRNAD1 Silent p.H438H 0.39 TCGA-A4-8630-01 1 171482181 171482181 C G PRRC2C Missense_Mutation p.R52G 0.35 unknown(0) TCGA-A4-8630-01 1 1849335 1849335 G T TMEM52 Missense_Mutation p.P206T 0.35 tolerated_low_confidence(0.12) benign(0.001) TCGA-A4-8630-01 1 22310247 22310247 C T CELA3B Silent p.L141L 0.30 TCGA-A4-8630-01 1 228584695 228584695 G T TRIM11 Missense_Mutation p.T271N 0.46 tolerated(0.28) possibly_damaging(0.505) TCGA-A4-8630-01 1 23759922 23759922 T A ASAP3 Missense_Mutation p.E708V 0.54 deleterious(0) possibly_damaging(0.77) TCGA-A4-8630-01 1 33985175 33985175 T A CSMD2 Silent p.T3469T 0.37 TCGA-A4-8630-01 1 38148727 38148727 A G C1orf109 3'UTR 0.48 TCGA-A4-8630-01 22 50903300 50903300 G A SBF1 Missense_Mutation p.P460L 0.35 tolerated(0.08) benign(0.013) TCGA-A4-8630-01 2 179429832 179429834 AAT - TTN In_Frame_Del p.I27009del 0.47 TCGA-A4-8630-01 2 179596191 179596191 C T TTN Missense_Mutation p.D5768N 0.07 TCGA-A4-8630-01 2 27560093 27560093 C T GTF3C2 Intron 0.35 TCGA-A4-8630-01 2 40405590 40405590 T C SLC8A1 Missense_Mutation p.K618E 0.46 deleterious(0.03) probably_damaging(1) TCGA-A4-8630-01 2 48049436 48049436 A C FBXO11 Missense_Mutation p.N541K 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-A4-8630-01 3 11600049 11600049 G A VGLL4 Missense_Mutation p.S291F 0.18 deleterious_low_confidence(0) unknown(0) TCGA-A4-8630-01 3 124487860 124487860 C T ITGB5 Missense_Mutation p.V673M 0.30 tolerated(0.14) benign(0.028) TCGA-A4-8630-01 4 106967781 106967781 G A TBCK Silent p.G876G 0.33 TCGA-A4-8630-01 4 154256196 154256196 T C TRIM2 3'UTR 0.30 TCGA-A4-8630-01 4 1807787 1807787 A G FGFR3 Missense_Mutation p.R618G 0.40 deleterious(0) probably_damaging(1) TCGA-A4-8630-01 4 190874221 190874221 A G FRG1 Splice_Site p.X87_splice 0.10 TCGA-A4-8630-01 4 48384849 48384849 T A SLAIN2 Missense_Mutation p.V376E 0.46 tolerated(0.29) benign(0.401) TCGA-A4-8630-01 5 129241299 129241299 C T CHSY3 Silent p.R259R 0.30 TCGA-A4-8630-01 5 131953819 131953819 A G RAD50 Silent p.A1074A 0.45 TCGA-A4-8630-01 5 176471535 176471535 G C ZNF346 Splice_Site p.X173_splice 0.33 TCGA-A4-8630-01 5 78610483 78610483 C T JMY Missense_Mutation p.P823L 0.33 tolerated(0.17) possibly_damaging(0.804) TCGA-A4-8630-01 6 32813531 32813531 C G TAP1 Missense_Mutation p.R751P 0.07 tolerated(0.08) benign(0.096) TCGA-A4-8630-01 6 4117677 4117677 C G ECI2 Missense_Mutation p.E298D 0.35 tolerated(0.06) possibly_damaging(0.555) TCGA-A4-8630-01 7 38431574 38431574 A - AMPH Frame_Shift_Del p.H551Qfs*9 0.35 TCGA-A4-8630-01 7 42959686 42959686 C A PSMA2 Intron 0.85 TCGA-A4-8630-01 7 97482647 97482647 C - ASNS Frame_Shift_Del p.L430Ffs*7 0.19 TCGA-A4-8630-01 8 24339727 24339728 - TA ADAM7 Frame_Shift_Ins p.S262Ifs*4 0.20 TCGA-A4-8630-01 8 8176328 8176328 C T SGK223 Missense_Mutation p.G1186D 0.31 benign(0.123) TCGA-A4-8630-01 9 131597888 131597888 T A CCBL1 Missense_Mutation p.Y305F 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-A4-8630-01 9 88284416 88284416 T G AGTPBP1 Missense_Mutation p.N216H 0.41 tolerated(0.52) possibly_damaging(0.517) TCGA-A4-A48D-01 10 74884990 74884990 T G NUDT13 Missense_Mutation p.Y194D 0.24 deleterious(0) probably_damaging(0.983) TCGA-A4-A48D-01 10 82039973 82039973 G T MAT1A Missense_Mutation p.R169S 0.08 deleterious(0) possibly_damaging(0.687) TCGA-A4-A48D-01 10 83635455 83635455 C G NRG3 Missense_Mutation p.S120C 0.27 deleterious(0.01) possibly_damaging(0.847) TCGA-A4-A48D-01 10 85984556 85984556 A T LRIT2 Missense_Mutation p.L142H 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-A4-A48D-01 10 88681453 88681453 G A BMPR1A Splice_Site p.X448_splice 0.28 TCGA-A4-A48D-01 10 88722852 88722852 C G SNCG 3'UTR 0.29 TCGA-A4-A48D-01 11 108381937 108381941 CTTCT - EXPH5 Frame_Shift_Del p.E1432* 0.25 TCGA-A4-A48D-01 11 116741113 116741113 A G SIK3 Missense_Mutation p.V523A 0.22 deleterious_low_confidence(0.02) benign(0.012) TCGA-A4-A48D-01 11 120355824 120355824 T A ARHGEF12 3'UTR 0.24 TCGA-A4-A48D-01 11 47602561 47602561 T A NDUFS3 Intron 0.19 TCGA-A4-A48D-01 11 5510196 5510196 T C OR52D1 Missense_Mutation p.I87T 0.27 deleterious(0.01) benign(0.006) TCGA-A4-A48D-01 11 621148 621148 T C CDHR5 Missense_Mutation p.T241A 0.21 tolerated(0.48) benign(0.025) TCGA-A4-A48D-01 12 126138829 126138830 - CAA TMEM132B In_Frame_Ins p.N938dup 0.18 TCGA-A4-A48D-01 12 14577475 14577475 C G ATF7IP Missense_Mutation p.P209R 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.904) TCGA-A4-A48D-01 12 40713882 40713882 A T LRRK2 Missense_Mutation p.K1640N 0.24 tolerated(0.55) benign(0.127) TCGA-A4-A48D-01 12 40745358 40745358 T A LRRK2 Missense_Mutation p.N2133K 0.12 tolerated(0.07) probably_damaging(0.998) TCGA-A4-A48D-01 12 53225246 53225246 C A KRT79 Silent p.G214G 0.23 TCGA-A4-A48D-01 12 56624990 56624990 C A SLC39A5 Intron 0.15 TCGA-A4-A48D-01 12 56827702 56827703 - CACG TIMELESS Frame_Shift_Ins p.K36Rfs*11 0.22 TCGA-A4-A48D-01 12 57389791 57389791 C G GPR182 Silent p.V266V 0.28 TCGA-A4-A48D-01 12 6974373 6974374 TG - USP5 Frame_Shift_Del p.C816Wfs*18 0.17 TCGA-A4-A48D-01 13 21163994 21163994 T C IFT88 Silent p.A75A 0.13 TCGA-A4-A48D-01 13 27664060 27664060 A T USP12 Missense_Mutation p.Y232N 0.35 deleterious(0.01) possibly_damaging(0.893) TCGA-A4-A48D-01 13 31711141 31711141 G C HSPH1 3'UTR 0.08 TCGA-A4-A48D-01 13 60686191 60686191 T C DIAPH3 Missense_Mutation p.K115E 0.23 tolerated(0.16) possibly_damaging(0.559) TCGA-A4-A48D-01 14 23444254 23444254 G A AJUBA Silent p.N433N 0.30 TCGA-A4-A48D-01 14 24701547 24701547 G T NEDD8 5'UTR 0.28 TCGA-A4-A48D-01 14 90769186 90769186 C T NRDE2 Missense_Mutation p.S430N 0.18 deleterious(0) possibly_damaging(0.701) TCGA-A4-A48D-01 15 39886356 39886356 C A THBS1 Nonsense_Mutation p.Y1108* 0.24 TCGA-A4-A48D-01 15 72190908 72190908 A G MYO9A Silent p.P1312P 0.32 TCGA-A4-A48D-01 15 74912367 74912371 ACCAG - CLK3 Frame_Shift_Del p.Y205* 0.27 TCGA-A4-A48D-01 15 79045665 79045665 G C RP11-160C18.4 RNA 0.28 TCGA-A4-A48D-01 16 1837701 1837701 G T NUBP2 Missense_Mutation p.D120Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-A4-A48D-01 16 18861438 18861438 T C SMG1 Missense_Mutation p.D1765G 0.34 tolerated(0.27) benign(0.107) TCGA-A4-A48D-01 16 20559488 20559488 G A ACSM2B Nonsense_Mutation p.Q332* 0.27 TCGA-A4-A48D-01 16 4557884 4557884 G T HMOX2 Silent p.V125V 0.16 TCGA-A4-A48D-01 16 68338097 68338097 C G SLC7A6OS Missense_Mutation p.E170D 0.33 deleterious(0.01) benign(0.392) TCGA-A4-A48D-01 16 721880 721880 G T RHOT2 Silent p.S325S 0.11 TCGA-A4-A48D-01 17 15466840 15466840 C G TVP23C-CDRT4 5'UTR 0.24 TCGA-A4-A48D-01 17 18226353 18226353 A T SMCR8 Missense_Mutation p.D928V 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-A4-A48D-01 17 37886504 37886504 T C MIEN1 Missense_Mutation p.S44G 0.25 deleterious(0.04) benign(0.089) TCGA-A4-A48D-01 18 2703754 2703754 A C SMCHD1 Missense_Mutation p.D571A 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-A4-A48D-01 18 39542509 39542509 C A PIK3C3 Missense_Mutation p.Q105K 0.05 tolerated(0.07) benign(0.117) TCGA-A4-A48D-01 19 19790040 19790040 A - ZNF101 Frame_Shift_Del p.T82Lfs*10 0.20 TCGA-A4-A48D-01 19 36029207 36029207 A C GAPDHS Splice_Site p.X82_splice 0.22 TCGA-A4-A48D-01 19 37369300 37369302 GCT A ZNF345 3'UTR 0.11 TCGA-A4-A48D-01 19 40276543 40276551 AGAATCCTG - LEUTX In_Frame_Del p.K92_G95delinsR 0.19 TCGA-A4-A48D-01 19 47278738 47278738 A C SLC1A5 3'UTR 0.26 TCGA-A4-A48D-01 19 54244568 54244568 A C MIR517C RNA 0.20 TCGA-A4-A48D-01 19 8642191 8642191 C G MYO1F Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0.05) benign(0.001) TCGA-A4-A48D-01 1 110734657 110734657 G A SLC6A17 Missense_Mutation p.G310S 0.23 deleterious(0.03) probably_damaging(0.913) TCGA-A4-A48D-01 1 110921516 110921516 C A SLC16A4 Missense_Mutation p.G330V 0.31 deleterious(0) probably_damaging(0.989) TCGA-A4-A48D-01 1 151261140 151261140 T G ZNF687 Missense_Mutation p.L751R 0.24 deleterious(0) probably_damaging(0.997) TCGA-A4-A48D-01 1 155015935 155015935 G T DCST1 Silent p.L374L 0.29 TCGA-A4-A48D-01 1 167825476 167825476 C T ADCY10 Missense_Mutation p.V700I 0.30 tolerated(0.15) benign(0.005) TCGA-A4-A48D-01 1 196227503 196227503 C T KCNT2 Missense_Mutation p.R1011Q 0.05 deleterious(0) probably_damaging(0.99) TCGA-A4-A48D-01 1 203151959 203151959 T C CHI3L1 Missense_Mutation p.K163E 0.26 tolerated(0.49) benign(0.01) TCGA-A4-A48D-01 1 226108161 226108161 C T PYCR2 Silent p.K319K 0.18 TCGA-A4-A48D-01 1 27662015 27662015 T G TMEM222 3'UTR 0.23 TCGA-A4-A48D-01 1 53416459 53416459 C T SCP2 Missense_Mutation p.H78Y 0.20 tolerated(0.23) probably_damaging(0.998) TCGA-A4-A48D-01 1 53535630 53535630 G T PODN Missense_Mutation p.G83C 0.44 tolerated_low_confidence(0.1) possibly_damaging(0.496) TCGA-A4-A48D-01 1 68697907 68697910 TTTG - WLS Frame_Shift_Del p.Q25Sfs*9 0.26 TCGA-A4-A48D-01 1 78395127 78395127 G C NEXN Missense_Mutation p.E331Q 0.27 tolerated(0.1) benign(0.008) TCGA-A4-A48D-01 1 9324818 9324818 A G H6PD Missense_Mutation p.T756A 0.22 tolerated(0.5) benign(0.155) TCGA-A4-A48D-01 20 1161648 1161648 G A TMEM74B Silent p.Y205Y 0.22 TCGA-A4-A48D-01 20 42310472 42310472 A G MYBL2 Missense_Mutation p.K55E 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-A4-A48D-01 20 49625900 49625900 G C KCNG1 Intron 0.38 TCGA-A4-A48D-01 22 40800334 40800334 C T SGSM3 Silent p.L81L 0.26 TCGA-A4-A48D-01 22 40802147 40802147 C T SGSM3 Missense_Mutation p.L294F 0.04 deleterious(0) probably_damaging(0.996) TCGA-A4-A48D-01 22 40825749 40825749 G A MKL1 Silent p.L54L 0.24 TCGA-A4-A48D-01 22 40825750 40825750 A G MKL1 Missense_Mutation p.L54P 0.25 deleterious(0) probably_damaging(0.991) TCGA-A4-A48D-01 2 113180154 113180154 T G RGPD8 Missense_Mutation p.N75H 0.23 tolerated(0.16) probably_damaging(0.959) TCGA-A4-A48D-01 2 160206728 160206728 C T BAZ2B Missense_Mutation p.E1452K 0.19 benign(0.109) TCGA-A4-A48D-01 2 170012842 170012842 G T LRP2 Silent p.V4031V 0.22 TCGA-A4-A48D-01 2 21227463 21227463 T C APOB Missense_Mutation p.Y3958C 0.25 probably_damaging(0.998) TCGA-A4-A48D-01 2 233676027 233676029 CTT - GIGYF2 In_Frame_Del p.L681del 0.28 TCGA-A4-A48D-01 2 29295663 29295663 G A C2orf71 Missense_Mutation p.P489S 0.31 tolerated(0.35) benign(0.034) TCGA-A4-A48D-01 3 123695737 123695737 C G ROPN1 Missense_Mutation p.E70Q 0.16 tolerated(0.08) possibly_damaging(0.742) TCGA-A4-A48D-01 3 13399893 13399893 G A NUP210 Silent p.V719V 0.12 TCGA-A4-A48D-01 3 150321105 150321105 G A SELT 5'UTR 0.13 TCGA-A4-A48D-01 3 15298471 15298471 G A SH3BP5 Silent p.L347L 0.21 TCGA-A4-A48D-01 3 154855893 154855893 T A MME Silent p.A241A 0.46 TCGA-A4-A48D-01 3 15765925 15765925 G A ANKRD28 Silent p.I219I 0.13 TCGA-A4-A48D-01 3 38316203 38316203 T C SLC22A13 Silent p.A197A 0.38 TCGA-A4-A48D-01 3 38755540 38755540 A C SCN10A Missense_Mutation p.L1238R 0.34 deleterious(0.01) benign(0.108) TCGA-A4-A48D-01 3 42577629 42577629 C T VIPR1 Silent p.G410G 0.46 TCGA-A4-A48D-01 3 4878618 4878618 A C ITPR1 Missense_Mutation p.Q2715P 0.22 deleterious(0) probably_damaging(0.993) TCGA-A4-A48D-01 3 51432461 51432461 G C RBM15B 3'UTR 0.43 TCGA-A4-A48D-01 4 102030234 102030236 AAC - PPP3CA Splice_Site p.X87_splice 0.17 TCGA-A4-A48D-01 4 128726257 128726266 GAAATTGTAG - HSPA4L Frame_Shift_Del p.I340Efs*8 0.17 TCGA-A4-A48D-01 4 141590874 141590874 G A TBC1D9 Silent p.L451L 0.03 TCGA-A4-A48D-01 4 153691183 153691183 C T TIGD4 Missense_Mutation p.S325N 0.22 tolerated(0.15) benign(0.02) TCGA-A4-A48D-01 4 22436990 22436990 C G GPR125 Missense_Mutation p.V463L 0.24 deleterious(0.03) benign(0.22) TCGA-A4-A48D-01 4 38988027 38988027 T A TMEM156 Missense_Mutation p.K251I 0.18 deleterious(0.04) possibly_damaging(0.689) TCGA-A4-A48D-01 4 56301748 56301748 A G CLOCK Missense_Mutation p.L792P 0.28 deleterious(0) possibly_damaging(0.879) TCGA-A4-A48D-01 4 84376489 84376489 A C HELQ Intron 0.05 TCGA-A4-A48D-01 5 134223683 134223688 TGGCGC - TXNDC15 In_Frame_Del p.G137_A138del 0.14 TCGA-A4-A48D-01 5 137506838 137506838 C - BRD8 Frame_Shift_Del p.G83Vfs*18 0.13 TCGA-A4-A48D-01 5 151784506 151784506 C A NMUR2 Missense_Mutation p.V57L 0.04 tolerated(0.32) benign(0.01) TCGA-A4-A48D-01 5 37017244 37017247 ATAG - NIPBL Frame_Shift_Del p.I1634Nfs*4 0.44 TCGA-A4-A48D-01 5 66449317 66449317 C A MAST4 Missense_Mutation p.A1186E 0.20 probably_damaging(0.976) TCGA-A4-A48D-01 5 66449318 66449318 A T MAST4 Silent p.A1186A 0.20 TCGA-A4-A48D-01 5 665190 665190 G A TPPP 3'UTR 0.17 TCGA-A4-A48D-01 5 7867846 7867846 A G FASTKD3 Silent p.S117S 0.43 TCGA-A4-A48D-01 5 82808190 82808190 C G VCAN Missense_Mutation p.S339R 0.31 deleterious(0) probably_damaging(0.995) TCGA-A4-A48D-01 5 82808191 82808191 A C VCAN Silent p.R340R 0.30 TCGA-A4-A48D-01 6 109690201 109690201 C T CD164 Silent p.V149V 0.21 TCGA-A4-A48D-01 6 158330822 158330822 T G SNX9 Silent p.T277T 0.24 TCGA-A4-A48D-01 6 2948772 2948772 C A SERPINB6 Silent p.L297L 0.24 TCGA-A4-A48D-01 6 31735431 31735431 T C VWA7 Missense_Mutation p.D535G 0.30 tolerated(0.1) benign(0.147) TCGA-A4-A48D-01 6 41065250 41065250 T G NFYA 3'UTR 0.24 TCGA-A4-A48D-01 6 49586991 49586991 C T RHAG Missense_Mutation p.G81D 0.25 deleterious(0) probably_damaging(0.997) TCGA-A4-A48D-01 6 656335 656335 A T HUS1B Missense_Mutation p.F204I 0.25 deleterious(0) probably_damaging(0.996) TCGA-A4-A48D-01 7 100344177 100344177 C T ZAN Silent p.L261L 0.26 TCGA-A4-A48D-01 7 113519562 113519562 T C PPP1R3A Missense_Mutation p.K529E 0.12 tolerated(0.51) benign(0.427) TCGA-A4-A48D-01 7 1478499 1478499 T G MICALL2 Missense_Mutation p.K700T 0.31 tolerated(0.22) benign(0.084) TCGA-A4-A48D-01 7 157369349 157369349 G C PTPRN2 Missense_Mutation p.D913E 0.07 deleterious(0.03) probably_damaging(0.973) TCGA-A4-A48D-01 7 27582616 27582616 C G HIBADH Silent p.V196V 0.24 TCGA-A4-A48D-01 7 43508701 43508701 A - HECW1 Frame_Shift_Del p.K1033Sfs*30 0.20 TCGA-A4-A48D-01 7 99434139 99434139 T - CYP3A43 Frame_Shift_Del p.L47Wfs*43 0.20 TCGA-A4-A48D-01 8 101076121 101076121 C G RGS22 Missense_Mutation p.R292T 0.14 tolerated(0.11) probably_damaging(0.949) TCGA-A4-A48D-01 8 11831570 11831570 G A DEFB136 Missense_Mutation p.A38V 0.28 deleterious(0) benign(0.334) TCGA-A4-A48D-01 8 125988719 125988719 A C ZNF572 Missense_Mutation p.E70A 0.22 tolerated(0.28) benign(0.079) TCGA-A4-A48D-01 8 140631226 140631231 TGTTCA - KCNK9 In_Frame_Del p.M132_N133del 0.14 TCGA-A4-A48D-01 8 145947050 145947050 A T ZNF251 Silent p.I665I 0.31 TCGA-A4-A48D-01 8 27516084 27516084 C T SCARA3 Nonsense_Mutation p.Q133* 0.07 TCGA-A4-A48D-01 8 37730035 37730036 - T RAB11FIP1 Frame_Shift_Ins p.S762Kfs*8 0.16 TCGA-A4-A48D-01 8 76463728 76463728 A G HNF4G Missense_Mutation p.Q153R 0.13 deleterious(0.04) benign(0.387) TCGA-A4-A48D-01 8 8234889 8234889 C A SGK223 Missense_Mutation p.G344C 0.05 probably_damaging(0.936) TCGA-A4-A48D-01 8 86250502 86250502 C T CA1 Missense_Mutation p.E72K 0.08 deleterious(0.04) benign(0.012) TCGA-A4-A48D-01 8 91029497 91029498 - A DECR1 Frame_Shift_Ins p.K73* 0.23 TCGA-A4-A48D-01 9 104125253 104125253 T C BAAT Silent p.V238V 0.26 TCGA-A4-A48D-01 9 132845879 132845879 A G GPR107 Missense_Mutation p.K188E 0.05 tolerated(0.24) benign(0.002) TCGA-A4-A48D-01 X 44922715 44922715 G T KDM6A Missense_Mutation p.G526W 0.63 deleterious(0) probably_damaging(0.997) TCGA-A4-A48D-01 X 44922716 44922716 G A KDM6A Missense_Mutation p.G526E 0.63 deleterious(0) probably_damaging(0.984) TCGA-A4-A48D-01 X 48760673 48760673 G T SLC35A2 3'UTR 0.05 TCGA-A4-A4ZT-01 10 71874678 71874678 G A AIFM2 Missense_Mutation p.P323L 0.25 tolerated(0.06) benign(0.133) TCGA-A4-A4ZT-01 11 63990576 63990576 G T FERMT3 Missense_Mutation p.R580L 0.38 deleterious(0.05) possibly_damaging(0.842) TCGA-A4-A4ZT-01 12 56814422 56814422 T G TIMELESS Missense_Mutation p.E1053D 0.49 tolerated(0.97) benign(0.02) TCGA-A4-A4ZT-01 12 85279278 85279278 A G SLC6A15 Silent p.S170S 0.27 TCGA-A4-A4ZT-01 13 113140459 113140459 C G TUBGCP3 Missense_Mutation p.V858L 0.42 tolerated(0.2) possibly_damaging(0.487) TCGA-A4-A4ZT-01 13 42185853 42185853 G C VWA8 Missense_Mutation p.A1579G 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-A4-A4ZT-01 15 41798200 41798200 G T LTK Silent p.A515A 0.46 TCGA-A4-A4ZT-01 15 78790510 78790510 C G IREB2 3'UTR 0.36 TCGA-A4-A4ZT-01 15 79587095 79587095 G A ANKRD34C Missense_Mutation p.G490D 0.32 deleterious(0) possibly_damaging(0.902) TCGA-A4-A4ZT-01 16 18849889 18849889 A G SMG1 Silent p.N2356N 0.23 TCGA-A4-A4ZT-01 16 30007027 30007027 G T HIRIP3 5'UTR 0.65 TCGA-A4-A4ZT-01 16 58292369 58292369 G C CCDC113 Missense_Mutation p.G163A 0.45 deleterious(0.01) possibly_damaging(0.881) TCGA-A4-A4ZT-01 16 58292370 58292370 G T CCDC113 Silent p.G163G 0.43 TCGA-A4-A4ZT-01 16 839242 839242 G T CHTF18 Missense_Mutation p.V107F 0.53 deleterious(0.01) benign(0.015) TCGA-A4-A4ZT-01 16 90127013 90127013 C A PRDM7 Silent p.R323R 0.28 TCGA-A4-A4ZT-01 17 27958364 27958364 C T SSH2 Missense_Mutation p.R1256H 0.61 deleterious(0.03) benign(0.051) TCGA-A4-A4ZT-01 17 33772567 33772567 T C SLFN13 Missense_Mutation p.R45G 0.52 tolerated(0.22) benign(0.164) TCGA-A4-A4ZT-01 17 37070728 37070728 G A LASP1 Missense_Mutation p.V170I 0.48 tolerated(0.36) benign(0.034) TCGA-A4-A4ZT-01 17 39661375 39661375 T A KRT13 Missense_Mutation p.Q143L 0.62 deleterious(0.02) possibly_damaging(0.842) TCGA-A4-A4ZT-01 17 45918192 45918192 A G SCRN2 Silent p.P6P 0.20 TCGA-A4-A4ZT-01 17 4872081 4872081 T A CAMTA2 Missense_Mutation p.R1216W 0.25 deleterious_low_confidence(0) possibly_damaging(0.675) TCGA-A4-A4ZT-01 18 9547717 9547717 A G PPP4R1 3'UTR 0.38 TCGA-A4-A4ZT-01 19 12639471 12639471 G T ZNF564 Missense_Mutation p.L15I 0.20 tolerated(0.41) possibly_damaging(0.824) TCGA-A4-A4ZT-01 19 21606232 21606232 A C ZNF493 Missense_Mutation p.R257S 0.51 tolerated(0.11) possibly_damaging(0.755) TCGA-A4-A4ZT-01 1 109265207 109265229 GAAAACTGGTATGTAAACAAGAG - FNDC7 Splice_Site p.X283_splice 0.25 TCGA-A4-A4ZT-01 1 109338856 109338856 G C STXBP3 Missense_Mutation p.D371H 0.24 deleterious(0) probably_damaging(0.997) TCGA-A4-A4ZT-01 1 19524166 19524172 ATTACGA - UBR4 Frame_Shift_Del p.R296Afs*6 0.36 TCGA-A4-A4ZT-01 1 24488008 24488008 G T IFNLR1 Intron 0.39 TCGA-A4-A4ZT-01 1 34052133 34052133 T A CSMD2 Missense_Mutation p.Q2343L 0.42 tolerated(0.09) benign(0.012) TCGA-A4-A4ZT-01 1 39878312 39878312 C T KIAA0754 Missense_Mutation p.S656L 0.28 benign(0) TCGA-A4-A4ZT-01 1 41237162 41237162 T A NFYC 3'Flank 0.05 TCGA-A4-A4ZT-01 20 25028726 25028755 GGTGATCCTCACTTCCGTTCCAGGCTCATC - ACSS1 In_Frame_Del p.D133_T142del 0.14 TCGA-A4-A4ZT-01 20 33866848 33866848 G T EIF6 3'UTR 0.24 TCGA-A4-A4ZT-01 20 36641648 36641648 G C TTI1 Missense_Mutation p.P191A 0.32 tolerated(1) benign(0.391) TCGA-A4-A4ZT-01 20 51871576 51871576 G A TSHZ2 Missense_Mutation p.A527T 0.35 deleterious(0) probably_damaging(0.998) TCGA-A4-A4ZT-01 21 34725061 34725061 T C IFNAR1 Intron 0.75 TCGA-A4-A4ZT-01 21 34725063 34725063 G A IFNAR1 Splice_Site p.X382_splice 0.75 TCGA-A4-A4ZT-01 22 45748333 45748333 G T SMC1B Missense_Mutation p.H1141Q 0.28 tolerated(0.06) benign(0.329) TCGA-A4-A4ZT-01 2 132290624 132290624 A G CCDC74A Missense_Mutation p.K330R 0.39 tolerated(0.14) possibly_damaging(0.69) TCGA-A4-A4ZT-01 2 172195861 172195861 G A METTL8 Missense_Mutation p.P147S 0.21 tolerated(0.33) benign(0.154) TCGA-A4-A4ZT-01 2 172195862 172195862 A G METTL8 Silent p.C146C 0.22 TCGA-A4-A4ZT-01 2 220161482 220161482 C T PTPRN Missense_Mutation p.A767T 0.24 deleterious(0) probably_damaging(0.997) TCGA-A4-A4ZT-01 2 225688235 225688235 C T DOCK10 Missense_Mutation p.V1056I 0.54 tolerated(0.08) benign(0.004) TCGA-A4-A4ZT-01 2 231264856 231264856 T A SP140L Missense_Mutation p.D404E 0.54 tolerated(0.09) possibly_damaging(0.747) TCGA-A4-A4ZT-01 2 71188132 71188132 A T ATP6V1B1 Missense_Mutation p.I223F 0.57 deleterious(0) probably_damaging(0.984) TCGA-A4-A4ZT-01 2 99938405 99938405 T G TXNDC9 Intron 0.25 TCGA-A4-A4ZT-01 3 152554722 152554722 G A P2RY1 3'UTR 0.23 TCGA-A4-A4ZT-01 3 171969140 171969140 T A FNDC3B Missense_Mutation p.I200N 0.58 tolerated(0.47) benign(0.063) TCGA-A4-A4ZT-01 3 183558378 183558378 A G PARL Missense_Mutation p.Y270H 0.36 tolerated(0.29) benign(0.008) TCGA-A4-A4ZT-01 3 8809352 8809352 G T OXTR Silent p.I174I 0.54 TCGA-A4-A4ZT-01 4 10099338 10099338 A G WDR1 Silent p.I185I 0.38 TCGA-A4-A4ZT-01 4 114277121 114277121 C A ANK2 Missense_Mutation p.H2449Q 0.34 possibly_damaging(0.837) TCGA-A4-A4ZT-01 5 353963 353963 C T AHRR Silent p.L65L 0.36 TCGA-A4-A4ZT-01 5 64956553 64956553 T G TRAPPC13 Nonsense_Mutation p.Y242* 0.36 TCGA-A4-A4ZT-01 5 96443096 96443096 C A LIX1 Nonsense_Mutation p.E119* 0.28 TCGA-A4-A4ZT-01 6 27806755 27806755 G A HIST1H2BN Missense_Mutation p.E106K 0.37 deleterious_low_confidence(0.01) benign(0.017) TCGA-A4-A4ZT-01 6 30572781 30572781 G A PPP1R10 Missense_Mutation p.T315M 0.33 deleterious(0) probably_damaging(0.994) TCGA-A4-A4ZT-01 7 141352597 141352597 G C AGK Missense_Mutation p.G381A 0.46 deleterious(0.03) probably_damaging(0.936) TCGA-A4-A4ZT-01 7 5567473 5567473 A G ACTB Missense_Mutation p.I345T 0.50 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-A4-A4ZT-01 7 84644467 84644467 A G SEMA3D Silent p.Y537Y 0.03 TCGA-A4-A4ZT-01 8 27913490 27913490 T G NUGGC Missense_Mutation p.K400Q 0.33 tolerated(0.07) possibly_damaging(0.548) TCGA-A4-A4ZT-01 8 27913492 27913492 T C NUGGC Missense_Mutation p.E399G 0.33 deleterious(0.02) possibly_damaging(0.448) TCGA-A4-A4ZT-01 8 62577734 62577734 T C ASPH Intron 0.40 TCGA-A4-A4ZT-01 9 131735460 131735460 A G NUP188 Missense_Mutation p.M379V 0.27 tolerated(0.6) benign(0.012) TCGA-A4-A4ZT-01 X 48751030 48751030 G C TIMM17B Missense_Mutation p.S217R 0.33 tolerated(0.35) benign(0.002) TCGA-A4-A4ZT-01 X 48751031 48751031 C T TIMM17B Missense_Mutation p.S217N 0.33 tolerated(0.56) benign(0.001) TCGA-A4-A57E-01 10 118357347 118357347 T C PNLIPRP1 Silent p.D194D 0.38 TCGA-A4-A57E-01 11 108384826 108384826 C T EXPH5 Missense_Mutation p.G470R 0.24 tolerated(1) benign(0.003) TCGA-A4-A57E-01 11 1094686 1094686 C T MUC2 Missense_Mutation p.T1925M 0.38 unknown(0) TCGA-A4-A57E-01 11 119027153 119027153 G T ABCG4 Missense_Mutation p.M267I 0.55 tolerated(0.08) benign(0.146) TCGA-A4-A57E-01 11 18159591 18159591 G - MRGPRX3 Frame_Shift_Del p.R281Lfs*7 0.26 TCGA-A4-A57E-01 11 48347236 48347236 C T OR4C3 Silent p.Y248Y 0.15 TCGA-A4-A57E-01 11 67789010 67789010 G T ALDH3B1 Missense_Mutation p.V206F 0.05 deleterious(0) probably_damaging(0.913) TCGA-A4-A57E-01 11 96126509 96126509 T G JRKL 3'UTR 0.69 TCGA-A4-A57E-01 12 122669246 122669246 T C LRRC43 Silent p.L111L 0.43 TCGA-A4-A57E-01 12 124335495 124335495 G A DNAH10 Missense_Mutation p.G1937S 0.55 probably_damaging(0.994) TCGA-A4-A57E-01 12 125509696 125509696 G T BRI3BP Missense_Mutation p.W159L 0.46 deleterious(0) probably_damaging(0.996) TCGA-A4-A57E-01 12 18435382 18435382 G A PIK3C2G Missense_Mutation p.E123K 0.14 tolerated_low_confidence(0.14) benign(0.007) TCGA-A4-A57E-01 12 33031889 33031889 G A PKP2 Missense_Mutation p.R101C 0.06 tolerated(0.2) benign(0.009) TCGA-A4-A57E-01 12 52700004 52700004 A G KRT86 Missense_Mutation p.K396R 0.31 deleterious(0) probably_damaging(0.996) TCGA-A4-A57E-01 12 58158227 58158227 G A CYP27B1 Missense_Mutation p.A357V 0.40 tolerated(0.3) benign(0.006) TCGA-A4-A57E-01 12 64491125 64491125 G C SRGAP1 Missense_Mutation p.E595Q 0.35 deleterious(0.01) possibly_damaging(0.906) TCGA-A4-A57E-01 13 75923415 75923415 C A TBC1D4 Silent p.L433L 0.53 TCGA-A4-A57E-01 14 20846267 20846267 G C TEP1 Silent p.A1879A 0.37 TCGA-A4-A57E-01 14 63447729 63447729 G A KCNH5 Missense_Mutation p.T268M 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-A4-A57E-01 14 65053588 65053588 G A PPP1R36 Silent p.K234K 0.21 TCGA-A4-A57E-01 14 67768686 67768686 C T MPP5 Intron 0.45 TCGA-A4-A57E-01 14 93117951 93117952 - T RIN3 Frame_Shift_Ins p.P187Sfs*30 0.38 TCGA-A4-A57E-01 15 32929467 32929467 T C ARHGAP11A Silent p.L831L 0.44 TCGA-A4-A57E-01 15 35275620 35275620 T A ZNF770 Missense_Mutation p.N6Y 0.39 tolerated(0.47) possibly_damaging(0.732) TCGA-A4-A57E-01 16 21156633 21156633 G A DNAH3 Missense_Mutation p.P106L 0.27 deleterious_low_confidence(0.04) benign(0.048) TCGA-A4-A57E-01 16 27473632 27473632 C T GTF3C1 Missense_Mutation p.V2034M 0.28 deleterious(0) probably_damaging(0.983) TCGA-A4-A57E-01 16 31473812 31473812 G A ARMC5 Missense_Mutation p.R315Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-A4-A57E-01 16 3711954 3711954 C G TRAP1 Intron 0.56 TCGA-A4-A57E-01 16 68941414 68941414 G T TANGO6 Missense_Mutation p.G579V 0.30 tolerated(0.33) benign(0.003) TCGA-A4-A57E-01 16 71779166 71779166 T G AP1G1 Missense_Mutation p.D630A 0.66 tolerated(0.71) benign(0.012) TCGA-A4-A57E-01 17 1630298 1630298 C T WDR81 Missense_Mutation p.S682F 0.70 deleterious(0.03) possibly_damaging(0.812) TCGA-A4-A57E-01 17 26901111 26901111 C T ALDOC Missense_Mutation p.R258H 0.56 tolerated(0.13) benign(0.154) TCGA-A4-A57E-01 17 27958146 27958146 T C SSH2 Missense_Mutation p.T1329A 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.624) TCGA-A4-A57E-01 17 28512533 28512533 G T NSRP1 Silent p.G506G 0.55 TCGA-A4-A57E-01 17 42828645 42828645 C A DBF4B 3'UTR 0.67 TCGA-A4-A57E-01 17 48191564 48191565 TG - SAMD14 Frame_Shift_Del p.Q338Vfs*4 0.19 TCGA-A4-A57E-01 17 7577559 7577559 G C TP53 Missense_Mutation p.S241C 0.75 deleterious(0) probably_damaging(1) TCGA-A4-A57E-01 19 16199862 16199862 G - TPM4 Frame_Shift_Del p.G191Vfs*14 0.37 TCGA-A4-A57E-01 19 19640278 19640278 G T NDUFA13 3'Flank 0.21 TCGA-A4-A57E-01 19 31769063 31769063 C T TSHZ3 Missense_Mutation p.G546S 0.46 deleterious(0) probably_damaging(0.999) TCGA-A4-A57E-01 19 39019255 39019255 A T RYR1 Missense_Mutation p.M3652L 0.35 benign(0) TCGA-A4-A57E-01 19 50918079 50918079 T A POLD1 Missense_Mutation p.F799Y 0.35 tolerated(0.36) benign(0.02) TCGA-A4-A57E-01 19 57766126 57766126 T A ZNF805 3'Flank 0.34 TCGA-A4-A57E-01 19 57908473 57908473 C T ZNF548 Missense_Mutation p.L37F 0.38 deleterious(0) probably_damaging(0.998) TCGA-A4-A57E-01 1 12835789 12835789 C T PRAMEF12 Nonsense_Mutation p.R131* 0.39 TCGA-A4-A57E-01 1 150256865 150256882 ATGGACAGGATCCAGCGT - C1orf51 In_Frame_Del p.M158_R163del 0.24 TCGA-A4-A57E-01 1 151001408 151001408 A - PRUNE Frame_Shift_Del p.L308Sfs*17 0.26 TCGA-A4-A57E-01 1 173454563 173454563 A G PRDX6 Missense_Mutation p.R106G 0.42 tolerated(0.12) benign(0.001) TCGA-A4-A57E-01 1 17907127 17907127 G T ARHGEF10L Nonsense_Mutation p.G13* 0.34 TCGA-A4-A57E-01 1 232600607 232600607 C G SIPA1L2 Missense_Mutation p.R933S 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-A4-A57E-01 1 23520587 23520587 G A HTR1D Silent p.A42A 0.40 TCGA-A4-A57E-01 1 3747716 3747716 G A CEP104 Missense_Mutation p.A577V 0.71 tolerated(0.18) benign(0.029) TCGA-A4-A57E-01 1 39881606 39881606 C A KIAA0754 3'UTR 0.32 TCGA-A4-A57E-01 1 47400713 47400713 C A CYP4A11 Missense_Mutation p.R250L 0.43 tolerated(0.11) benign(0.193) TCGA-A4-A57E-01 1 47905224 47905224 G A FOXD2 Missense_Mutation p.G473R 0.61 deleterious_low_confidence(0) unknown(0) TCGA-A4-A57E-01 20 36869309 36869309 C A KIAA1755 Missense_Mutation p.E408D 0.44 tolerated(0.14) benign(0.005) TCGA-A4-A57E-01 20 42199308 42199308 T C SGK2 Missense_Mutation p.F198L 0.22 deleterious(0.02) probably_damaging(1) TCGA-A4-A57E-01 20 43090810 43090810 G A C20orf62 Silent p.N76N 0.27 TCGA-A4-A57E-01 20 9525075 9525075 C A PAK7 Missense_Mutation p.V604F 0.31 deleterious(0) probably_damaging(0.999) TCGA-A4-A57E-01 20 9525076 9525076 C T PAK7 Silent p.L603L 0.30 TCGA-A4-A57E-01 22 42289163 42289163 C A SREBF2 Missense_Mutation p.H751N 0.54 tolerated(0.23) benign(0.03) TCGA-A4-A57E-01 2 113540317 113540317 G T IL1A Silent p.S24S 0.21 TCGA-A4-A57E-01 2 114487016 114487016 A C SLC35F5 Missense_Mutation p.V351G 0.65 deleterious(0) possibly_damaging(0.465) TCGA-A4-A57E-01 2 1241762 1241762 C A SNTG2 Silent p.A274A 0.64 TCGA-A4-A57E-01 2 1241763 1241763 A T SNTG2 Missense_Mutation p.N275Y 0.66 deleterious(0) possibly_damaging(0.885) TCGA-A4-A57E-01 2 131812937 131812937 G A FAM168B Missense_Mutation p.P128L 0.64 tolerated_low_confidence(0.06) probably_damaging(0.998) TCGA-A4-A57E-01 2 204304798 204304798 C G RAPH1 Missense_Mutation p.G1039R 0.29 unknown(0) TCGA-A4-A57E-01 2 220072714 220072714 C T ZFAND2B Silent p.L130L 0.70 TCGA-A4-A57E-01 2 225422463 225422463 T G CUL3 Missense_Mutation p.R59S 0.66 deleterious(0) possibly_damaging(0.864) TCGA-A4-A57E-01 4 55570036 55570036 C G KIT Silent p.V301V 0.36 TCGA-A4-A57E-01 4 73148995 73148995 C T ADAMTS3 Missense_Mutation p.S1159N 0.33 tolerated_low_confidence(0.55) benign(0) TCGA-A4-A57E-01 5 118451949 118451949 A T DMXL1 Missense_Mutation p.I221F 0.27 deleterious(0.01) benign(0.056) TCGA-A4-A57E-01 5 141035313 141035313 G C ARAP3 Missense_Mutation p.Q1329E 0.30 tolerated(0.4) possibly_damaging(0.519) TCGA-A4-A57E-01 5 178567002 178567002 G A ADAMTS2 Missense_Mutation p.P555L 0.29 tolerated(0.06) probably_damaging(0.973) TCGA-A4-A57E-01 6 129766960 129766960 C T LAMA2 Silent p.A2141A 0.45 TCGA-A4-A57E-01 6 139235873 139235873 G T REPS1 Silent p.A581A 0.45 TCGA-A4-A57E-01 6 26597328 26597328 A T ABT1 Nonsense_Mutation p.K40* 0.40 TCGA-A4-A57E-01 6 28962735 28962735 T C ZNF311 3'UTR 0.25 TCGA-A4-A57E-01 6 30638810 30638810 T A DHX16 Intron 0.39 TCGA-A4-A57E-01 6 55925556 55925557 - A COL21A1 Frame_Shift_Ins p.C797Lfs*19 0.26 TCGA-A4-A57E-01 6 56966590 56966590 C T ZNF451 Intron 0.49 TCGA-A4-A57E-01 7 100676808 100676808 A G MUC17 Missense_Mutation p.E704G 0.22 probably_damaging(0.995) TCGA-A4-A57E-01 7 15725867 15725867 G C MEOX2 Missense_Mutation p.P54R 0.24 deleterious(0) benign(0.137) TCGA-A4-A57E-01 7 18975517 18975517 C T HDAC9 Silent p.A963A 0.24 TCGA-A4-A57E-01 7 23728992 23728992 C G FAM221A Missense_Mutation p.P115R 0.26 deleterious(0) probably_damaging(0.999) TCGA-A4-A57E-01 7 31377935 31377935 G A NEUROD6 Silent p.Y316Y 0.48 TCGA-A4-A57E-01 7 63537709 63537709 A T ZNF727 Silent p.S94S 0.24 TCGA-A4-A57E-01 7 92764048 92764048 A T SAMD9L Missense_Mutation p.Y413N 0.25 deleterious(0.01) benign(0.248) TCGA-A4-A57E-01 7 92953019 92953019 A T CCDC132 Missense_Mutation p.Y651F 0.20 tolerated(0.23) benign(0.048) TCGA-A4-A57E-01 7 99798628 99798628 C T GATS 3'UTR 0.57 TCGA-A4-A57E-01 8 104432588 104432588 A C DCAF13 Missense_Mutation p.K208T 0.38 deleterious(0) probably_damaging(0.993) TCGA-A4-A57E-01 8 139707076 139707076 C T COL22A1 Missense_Mutation p.G880E 0.42 probably_damaging(1) TCGA-A4-A57E-01 8 144397926 144397926 G C TOP1MT Missense_Mutation p.H508Q 0.45 tolerated(0.49) benign(0.131) TCGA-A4-A57E-01 9 138649177 138649177 C G KCNT1 Missense_Mutation p.P237A 0.33 deleterious(0) probably_damaging(0.992) TCGA-A4-A57E-01 X 125955414 125955414 T A CXorf64 Missense_Mutation p.F265I 0.79 deleterious(0) possibly_damaging(0.895) TCGA-A4-A5DU-01 10 112540726 112540726 T C RBM20 Missense_Mutation p.L120P 0.36 deleterious(0) probably_damaging(0.999) TCGA-A4-A5DU-01 10 70670106 70670106 C A DDX50 Missense_Mutation p.P143H 0.27 deleterious(0.03) possibly_damaging(0.592) TCGA-A4-A5DU-01 11 100641096 100641096 A T ARHGAP42 Missense_Mutation p.K59N 0.49 deleterious(0) possibly_damaging(0.859) TCGA-A4-A5DU-01 11 26720060 26720060 C A SLC5A12 Missense_Mutation p.G282C 0.55 deleterious(0) probably_damaging(1) TCGA-A4-A5DU-01 11 61897408 61897408 G A INCENP Missense_Mutation p.A137T 0.40 tolerated(0.29) unknown(0) TCGA-A4-A5DU-01 11 72293520 72293520 G T PDE2A Missense_Mutation p.P607T 0.51 deleterious(0) probably_damaging(0.985) TCGA-A4-A5DU-01 12 98995295 98995295 T A SLC25A3 Missense_Mutation p.L360I 0.63 tolerated_low_confidence(0.1) probably_damaging(0.984) TCGA-A4-A5DU-01 14 21793036 21793036 C T RPGRIP1 Silent p.P674P 0.37 TCGA-A4-A5DU-01 14 47120994 47120994 C T RPL10L 5'UTR 0.46 TCGA-A4-A5DU-01 15 41064527 41064527 A T C15orf62 3'UTR 0.28 TCGA-A4-A5DU-01 15 81181040 81181040 A T KIAA1199 Splice_Site p.X290_splice 0.52 TCGA-A4-A5DU-01 16 56700768 56700768 T C MT1G 3'UTR 0.60 TCGA-A4-A5DU-01 17 4693110 4693110 A G GLTPD2 Missense_Mutation p.K132R 0.56 deleterious(0) probably_damaging(1) TCGA-A4-A5DU-01 17 7751756 7751756 C T KDM6B Missense_Mutation p.A717V 0.07 unknown(0) TCGA-A4-A5DU-01 19 10506875 10506875 C T CDC37 Missense_Mutation p.R36Q 0.50 deleterious(0.02) probably_damaging(0.926) TCGA-A4-A5DU-01 1 151785765 151785765 G A RORC Missense_Mutation p.T375M 0.45 deleterious(0) probably_damaging(1) TCGA-A4-A5DU-01 1 172634980 172634980 A G FASLG Missense_Mutation p.M224V 0.44 deleterious(0) benign(0) TCGA-A4-A5DU-01 1 207112530 207112530 A G PIGR Missense_Mutation p.Y108H 0.36 deleterious(0) probably_damaging(1) TCGA-A4-A5DU-01 1 220324630 220324630 A G RAB3GAP2 Missense_Mutation p.I1382T 0.06 tolerated(0.1) benign(0.004) TCGA-A4-A5DU-01 1 231931003 231931003 A - DISC1 Frame_Shift_Del p.K551Nfs*16 0.32 TCGA-A4-A5DU-01 1 43902958 43902958 C T SZT2 Missense_Mutation p.R1994C 0.51 deleterious(0) probably_damaging(0.999) TCGA-A4-A5DU-01 1 6639633 6639633 G A TAS1R1 Missense_Mutation p.G839S 0.37 tolerated(0.4) benign(0.017) TCGA-A4-A5DU-01 22 41911896 41911896 T C ACO2 Silent p.P270P 0.54 TCGA-A4-A5DU-01 2 215865727 215865727 G C ABCA12 Missense_Mutation p.P961A 0.34 deleterious(0) probably_damaging(1) TCGA-A4-A5DU-01 2 218713569 218713569 C G TNS1 Missense_Mutation p.L432F 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-A4-A5DU-01 2 44457731 44457731 T C PPM1B Silent p.S438S 0.66 TCGA-A4-A5DU-01 2 45879246 45879246 G C PRKCE Missense_Mutation p.V3L 0.51 tolerated(0.31) benign(0.003) TCGA-A4-A5DU-01 3 52526011 52526011 C T NISCH Missense_Mutation p.P1343L 0.27 tolerated(0.05) probably_damaging(0.981) TCGA-A4-A5DU-01 4 15552558 15552558 A G CC2D2A Missense_Mutation p.S765G 0.47 deleterious(0) benign(0.238) TCGA-A4-A5DU-01 4 436799 436801 GAG - ZNF721 In_Frame_Del p.S487del 0.30 TCGA-A4-A5DU-01 5 55237637 55237637 T A IL6ST Missense_Mutation p.N677I 0.41 deleterious(0) possibly_damaging(0.602) TCGA-A4-A5DU-01 6 31612378 31612378 A T BAG6 Missense_Mutation p.D463E 0.43 tolerated(0.26) possibly_damaging(0.74) TCGA-A4-A5DU-01 6 97051597 97051597 A G FHL5 Silent p.V36V 0.38 TCGA-A4-A5DU-01 7 133984905 133984905 T C SLC35B4 Missense_Mutation p.N199S 0.48 tolerated(0.47) benign(0.048) TCGA-A4-A5DU-01 7 44796552 44796552 G A ZMIZ2 Missense_Mutation p.G58R 0.44 deleterious(0) probably_damaging(0.992) TCGA-A4-A5DU-01 7 70229864 70229864 C G AUTS2 Silent p.T447T 0.54 TCGA-A4-A5DU-01 7 95040981 95040981 G T PON2 Missense_Mutation p.H160N 0.49 deleterious(0.01) benign(0.297) TCGA-A4-A5DU-01 8 94934633 94934633 C T PDP1 Nonsense_Mutation p.Q141* 0.46 TCGA-A4-A5DU-01 9 1055809 1055809 T C DMRT2 Intron 0.71 TCGA-A4-A5DU-01 9 19379661 19379661 A G RPS6 Intron 0.47 TCGA-A4-A5XZ-01 10 106074121 106074121 G A ITPRIP 3'UTR 0.33 TCGA-A4-A5XZ-01 10 49659052 49659052 C G ARHGAP22 Missense_Mutation p.E390Q 0.45 deleterious(0.02) possibly_damaging(0.591) TCGA-A4-A5XZ-01 10 70209856 70209856 T C DNA2 Missense_Mutation p.T376A 0.41 tolerated(0.34) benign(0.008) TCGA-A4-A5XZ-01 11 111934729 111934729 C G DLAT 3'UTR 0.33 TCGA-A4-A5XZ-01 11 35642087 35642087 G A FJX1 3'UTR 0.34 TCGA-A4-A5XZ-01 11 46726233 46726233 A C ZNF408 Missense_Mutation p.Q328P 0.30 deleterious(0.01) possibly_damaging(0.462) TCGA-A4-A5XZ-01 11 67168351 67168351 A C PPP1CA Missense_Mutation p.F87C 0.28 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-A4-A5XZ-01 11 72145550 72145550 C G CLPB 5'UTR 0.54 TCGA-A4-A5XZ-01 11 764914 764914 G A TALDO1 3'UTR 0.22 TCGA-A4-A5XZ-01 12 49390815 49390815 A T DDN Missense_Mutation p.V615E 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A4-A5XZ-01 12 69743944 69743944 G T LYZ Missense_Mutation p.A65S 0.31 tolerated(0.53) benign(0.001) TCGA-A4-A5XZ-01 12 93835811 93835811 T A UBE2N 5'UTR 0.49 TCGA-A4-A5XZ-01 13 100635322 100635322 G A ZIC2 Missense_Mutation p.C335Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-A4-A5XZ-01 14 31175075 31175075 A T SCFD1 Missense_Mutation p.T513S 0.30 tolerated(0.33) benign(0.007) TCGA-A4-A5XZ-01 14 57072352 57072352 A C TMEM260 Missense_Mutation p.Y196S 0.36 deleterious(0) probably_damaging(0.924) TCGA-A4-A5XZ-01 14 68252617 68252617 C T ZFYVE26 Missense_Mutation p.D1088N 0.31 deleterious(0.01) benign(0.109) TCGA-A4-A5XZ-01 14 69697234 69697234 G C EXD2 Missense_Mutation p.E212D 0.31 tolerated(0.06) possibly_damaging(0.811) TCGA-A4-A5XZ-01 14 70989617 70989617 A C ADAM20 Missense_Mutation p.C670G 0.34 deleterious(0) probably_damaging(1) TCGA-A4-A5XZ-01 14 74206660 74206660 A T ELMSAN1 Missense_Mutation p.F18I 0.37 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-A4-A5XZ-01 15 52404725 52404725 A T BCL2L10 Missense_Mutation p.Y67N 0.39 deleterious(0) probably_damaging(0.984) TCGA-A4-A5XZ-01 15 65108030 65108030 A T PIF1 3'UTR 0.32 TCGA-A4-A5XZ-01 15 75132623 75132623 C T ULK3 Silent p.R216R 0.38 TCGA-A4-A5XZ-01 16 3063765 3063765 C A CLDN9 Silent p.I134I 0.54 TCGA-A4-A5XZ-01 17 26851949 26851949 C - FOXN1 Frame_Shift_Del p.Y186Tfs*116 0.24 TCGA-A4-A5XZ-01 17 37358657 37358657 C T RPL19 Missense_Mutation p.T67I 0.50 tolerated(0.14) benign(0.12) TCGA-A4-A5XZ-01 17 38230555 38230555 A G THRA 5'UTR 0.44 TCGA-A4-A5XZ-01 17 48941072 48941072 T A TOB1 Missense_Mutation p.I103F 0.25 deleterious(0) possibly_damaging(0.485) TCGA-A4-A5XZ-01 17 57288259 57288259 C A SMG8 Missense_Mutation p.Q283K 0.06 tolerated(0.82) benign(0.078) TCGA-A4-A5XZ-01 17 62496852 62496852 G C DDX5 Missense_Mutation p.P419R 0.24 deleterious(0) probably_damaging(1) TCGA-A4-A5XZ-01 19 10610566 10610566 G T KEAP1 Silent p.G48G 0.39 TCGA-A4-A5XZ-01 19 36229181 36229181 A G KMT2B Splice_Site p.X2625_splice 0.37 TCGA-A4-A5XZ-01 19 45211204 45211204 G A CEACAM16 Missense_Mutation p.V338M 0.29 deleterious(0) probably_damaging(1) TCGA-A4-A5XZ-01 19 623528 623528 T C POLRMT Missense_Mutation p.M406V 0.18 tolerated(1) benign(0) TCGA-A4-A5XZ-01 1 2066777 2066777 C T PRKCZ Silent p.R137R 0.59 TCGA-A4-A5XZ-01 1 223536686 223536686 T C SUSD4 Missense_Mutation p.R28G 0.33 tolerated_low_confidence(0.06) probably_damaging(0.983) TCGA-A4-A5XZ-01 1 227935595 227935595 T A SNAP47 Missense_Mutation p.I98K 0.43 deleterious(0) probably_damaging(0.943) TCGA-A4-A5XZ-01 1 90180077 90180077 A G LRRC8C Missense_Mutation p.T650A 0.30 tolerated(1) benign(0.003) TCGA-A4-A5XZ-01 1 91403569 91403569 G T ZNF644 Nonsense_Mutation p.S1054* 0.44 TCGA-A4-A5XZ-01 20 61467549 61467549 G T COL9A3 Missense_Mutation p.R471L 0.29 tolerated(0.14) probably_damaging(0.999) TCGA-A4-A5XZ-01 22 20030918 20030918 C T TANGO2 Missense_Mutation p.P33S 0.29 deleterious(0) probably_damaging(0.925) TCGA-A4-A5XZ-01 22 42174850 42174850 C G MEI1 Intron 0.30 TCGA-A4-A5XZ-01 2 202939695 202939695 T A AC079354.1 Missense_Mutation p.W56R 0.20 deleterious(0) possibly_damaging(0.804) TCGA-A4-A5XZ-01 2 220342479 220342479 T C SPEG Missense_Mutation p.F1600L 0.54 benign(0.002) TCGA-A4-A5XZ-01 2 234580542 234580542 T C UGT1A9 5'UTR 0.37 TCGA-A4-A5XZ-01 2 242082279 242082279 G T PASK Missense_Mutation p.L57I 0.54 deleterious(0) probably_damaging(0.999) TCGA-A4-A5XZ-01 2 242196033 242196033 T C HDLBP Silent p.L213L 0.28 TCGA-A4-A5XZ-01 2 27436144 27436144 A G ATRAID Missense_Mutation p.N122D 0.27 tolerated(0.21) benign(0.013) TCGA-A4-A5XZ-01 2 71036918 71036918 G A CLEC4F Silent p.S537S 0.30 TCGA-A4-A5XZ-01 2 86947925 86947925 G A RMND5A Silent p.Q45Q 0.42 TCGA-A4-A5XZ-01 3 113176133 113176133 C T SPICE1 Missense_Mutation p.E503K 0.40 deleterious(0.02) possibly_damaging(0.779) TCGA-A4-A5XZ-01 3 125826081 125826081 A C ALDH1L1 Missense_Mutation p.F796V 0.62 tolerated(0.39) benign(0.321) TCGA-A4-A5XZ-01 3 49689059 49689059 C A BSN Silent p.I690I 0.38 TCGA-A4-A5XZ-01 3 85851274 85851274 G C CADM2 Missense_Mutation p.D49H 0.05 deleterious(0.01) possibly_damaging(0.591) TCGA-A4-A5XZ-01 4 3230734 3230734 T C HTT Missense_Mutation p.S2703P 0.38 possibly_damaging(0.786) TCGA-A4-A5XZ-01 5 140034136 140034136 A C IK Missense_Mutation p.E185D 0.33 tolerated(0.25) benign(0.113) TCGA-A4-A5XZ-01 5 140800833 140800833 G A PCDHGA11 Silent p.L13L 0.32 TCGA-A4-A5XZ-01 5 34020467 34020467 G A C1QTNF3 3'UTR 0.73 TCGA-A4-A5XZ-01 6 20739778 20739778 G C CDKAL1 Missense_Mutation p.V134L 0.26 deleterious(0.03) probably_damaging(0.922) TCGA-A4-A5XZ-01 6 21596548 21596548 C - SOX4 3'UTR 0.36 TCGA-A4-A5XZ-01 6 36653614 36653614 G A CDKN1A 3'UTR 0.40 TCGA-A4-A5XZ-01 6 41059422 41059422 G A NFYA Missense_Mutation p.G235R 0.36 deleterious(0) probably_damaging(1) TCGA-A4-A5XZ-01 6 43483379 43483379 T - YIPF3 Frame_Shift_Del p.I117Sfs*21 0.29 TCGA-A4-A5XZ-01 7 100485329 100485329 T C SRRT Silent p.P725P 0.31 TCGA-A4-A5XZ-01 7 2275155 2275155 G T FTSJ2 Missense_Mutation p.H115N 0.36 tolerated(0.19) benign(0.058) TCGA-A4-A5XZ-01 7 30492406 30492406 G A NOD1 Silent p.S209S 0.29 TCGA-A4-A5XZ-01 7 44747231 44747232 - A OGDH Frame_Shift_Ins p.N950Kfs*3 0.27 TCGA-A4-A5XZ-01 7 64388953 64388953 C G ZNF273 Missense_Mutation p.T416S 0.43 tolerated(0.54) benign(0.192) TCGA-A4-A5XZ-01 7 87049331 87049331 T C ABCB4 Missense_Mutation p.K793E 0.42 tolerated(0.08) benign(0.038) TCGA-A4-A5XZ-01 8 48809814 48809814 C G PRKDC Missense_Mutation p.V1169L 0.40 probably_damaging(0.98) TCGA-A4-A5XZ-01 8 53077753 53077753 G T ST18 Missense_Mutation p.P413T 0.06 deleterious(0.02) probably_damaging(1) TCGA-A4-A5XZ-01 8 53569322 53569322 G A RB1CC1 Nonsense_Mutation p.Q1023* 0.24 TCGA-A4-A5XZ-01 X 39932148 39932148 A G BCOR Silent p.T817T 0.51 TCGA-A4-A5Y0-01 10 81838633 81838633 G A TMEM254 Intron 0.68 TCGA-A4-A5Y0-01 11 134095054 134095054 A T VPS26B Missense_Mutation p.E13V 0.51 tolerated(0.05) benign(0.006) TCGA-A4-A5Y0-01 11 65826742 65826742 C T SF3B2 Missense_Mutation p.A418V 0.04 tolerated(0.55) benign(0) TCGA-A4-A5Y0-01 12 49362081 49362081 G T WNT10B Missense_Mutation p.S120Y 0.73 deleterious(0) possibly_damaging(0.837) TCGA-A4-A5Y0-01 12 57006901 57006901 T A BAZ2A Missense_Mutation p.N347Y 0.46 tolerated(0.09) possibly_damaging(0.665) TCGA-A4-A5Y0-01 12 83251132 83251132 G T TMTC2 Missense_Mutation p.G143W 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-A4-A5Y0-01 14 102718326 102718326 C A MOK Missense_Mutation p.R97I 0.46 deleterious(0.03) probably_damaging(0.961) TCGA-A4-A5Y0-01 14 38060788 38060788 A T FOXA1 Missense_Mutation p.S401T 0.55 deleterious(0) probably_damaging(0.993) TCGA-A4-A5Y0-01 14 73959009 73959009 G A HEATR4 Intron 0.46 TCGA-A4-A5Y0-01 15 40544920 40544920 C T C15orf56 Missense_Mutation p.R57Q 0.43 tolerated_low_confidence(0.17) benign(0.417) TCGA-A4-A5Y0-01 15 40914359 40914359 A - CASC5 Frame_Shift_Del p.S659Afs*2 0.27 TCGA-A4-A5Y0-01 16 1826070 1826070 C T EME2 Missense_Mutation p.A324V 0.32 tolerated(0.07) benign(0.388) TCGA-A4-A5Y0-01 16 2369834 2369834 G C ABCA3 Missense_Mutation p.I207M 0.28 tolerated(0.07) benign(0.217) TCGA-A4-A5Y0-01 16 30435583 30435583 A T DCTPP1 Missense_Mutation p.C162S 0.52 tolerated_low_confidence(0.67) benign(0.001) TCGA-A4-A5Y0-01 16 3486347 3486354 GGACATAT - ZNF597 3'UTR 0.43 TCGA-A4-A5Y0-01 16 4042307 4042307 C - ADCY9 Frame_Shift_Del p.E683Rfs*23 0.37 TCGA-A4-A5Y0-01 16 72142801 72142801 C T DHX38 Missense_Mutation p.H1120Y 0.36 deleterious(0.01) probably_damaging(1) TCGA-A4-A5Y0-01 17 10215392 10215392 A - MYH13 Frame_Shift_Del p.V1456Afs*33 0.24 TCGA-A4-A5Y0-01 17 15971431 15971431 T G NCOR1 Silent p.T1506T 0.28 TCGA-A4-A5Y0-01 17 38711306 38711306 G T CCR7 Missense_Mutation p.F275L 0.31 tolerated(0.35) possibly_damaging(0.528) TCGA-A4-A5Y0-01 17 42335911 42335911 T A SLC4A1 Silent p.L319L 0.29 TCGA-A4-A5Y0-01 17 48216644 48216644 T C PPP1R9B Missense_Mutation p.Q684R 0.27 deleterious(0.01) benign(0.36) TCGA-A4-A5Y0-01 17 51901648 51901648 C T KIF2B Silent p.V418V 0.29 TCGA-A4-A5Y0-01 17 61613115 61613115 A G KCNH6 Missense_Mutation p.Y396C 0.58 deleterious(0.03) probably_damaging(1) TCGA-A4-A5Y0-01 17 76210286 76210286 C A BIRC5 5'UTR 0.19 TCGA-A4-A5Y0-01 18 29454405 29454405 G A TRAPPC8 Intron 0.64 TCGA-A4-A5Y0-01 18 6992669 6992669 G A LAMA1 Silent p.L1687L 0.51 TCGA-A4-A5Y0-01 18 74700845 74700845 C T RP11-862L9.3 3'Flank 0.41 TCGA-A4-A5Y0-01 18 9257703 9257703 C G ANKRD12 Missense_Mutation p.Q1480E 0.39 deleterious_low_confidence(0) benign(0.097) TCGA-A4-A5Y0-01 19 21990696 21990696 A T ZNF43 Missense_Mutation p.F715I 0.51 deleterious(0.01) possibly_damaging(0.761) TCGA-A4-A5Y0-01 19 46215847 46215847 T C FBXO46 Missense_Mutation p.K303E 0.47 tolerated(0.11) probably_damaging(0.953) TCGA-A4-A5Y0-01 1 111957940 111957940 A C OVGP1 Missense_Mutation p.F395V 0.39 deleterious(0.01) benign(0.118) TCGA-A4-A5Y0-01 1 151993859 151993863 AGGTA - NBPF18P Splice_Site 0.43 TCGA-A4-A5Y0-01 1 156294858 156294858 A G CCT3 Silent p.A109A 0.47 TCGA-A4-A5Y0-01 1 222705394 222705394 C T HHIPL2 Missense_Mutation p.C546Y 0.48 deleterious(0.02) possibly_damaging(0.896) TCGA-A4-A5Y0-01 1 226784625 226784625 G A C1orf95 Missense_Mutation p.V109I 0.40 tolerated(0.75) benign(0.006) TCGA-A4-A5Y0-01 1 24120872 24120872 A G LYPLA2 Intron 0.59 TCGA-A4-A5Y0-01 1 24921934 24921934 A T NCMAP Missense_Mutation p.T5S 0.47 tolerated(0.2) probably_damaging(0.994) TCGA-A4-A5Y0-01 1 62740358 62740358 A T KANK4 Missense_Mutation p.L140M 0.41 tolerated(0.22) benign(0.268) TCGA-A4-A5Y0-01 1 76253203 76253203 A G RABGGTB Missense_Mutation p.I9V 0.43 tolerated(0.31) benign(0) TCGA-A4-A5Y0-01 1 9305536 9305536 C T H6PD Silent p.F181F 0.38 TCGA-A4-A5Y0-01 20 57876603 57876603 G T EDN3 Missense_Mutation p.G64V 0.47 deleterious(0.03) benign(0.01) TCGA-A4-A5Y0-01 2 11376037 11376037 T G ROCK2 Missense_Mutation p.M172L 0.05 deleterious(0) probably_damaging(0.997) TCGA-A4-A5Y0-01 2 190306179 190306179 G A WDR75 5'UTR 0.18 TCGA-A4-A5Y0-01 2 190306269 190306269 G C WDR75 Missense_Mutation p.L17F 0.19 deleterious(0.01) possibly_damaging(0.89) TCGA-A4-A5Y0-01 2 225362540 225362540 C G CUL3 Missense_Mutation p.R546P 0.91 deleterious(0) probably_damaging(0.998) TCGA-A4-A5Y0-01 2 233344925 233344925 G A ECEL1 Missense_Mutation p.R756W 0.06 deleterious(0) probably_damaging(0.995) TCGA-A4-A5Y0-01 2 28615823 28615823 G C FOSL2 5'UTR 0.13 TCGA-A4-A5Y0-01 2 28615827 28615827 G T FOSL2 5'UTR 0.12 TCGA-A4-A5Y0-01 2 58386912 58386912 T C FANCL Silent p.G377G 0.04 TCGA-A4-A5Y0-01 2 80136916 80136916 T C CTNNA2 Missense_Mutation p.M350T 0.41 deleterious(0.03) benign(0.332) TCGA-A4-A5Y0-01 3 137849689 137849689 A C A4GNT Splice_Site p.X136_splice 0.49 TCGA-A4-A5Y0-01 3 142403182 142403182 A G PLS1 Missense_Mutation p.Y278C 0.48 deleterious(0) probably_damaging(0.943) TCGA-A4-A5Y0-01 3 170020905 170020905 A - PRKCI Frame_Shift_Del p.E594Dfs*18 0.31 TCGA-A4-A5Y0-01 3 179298770 179298770 G T ACTL6A Nonsense_Mutation p.G307* 0.51 TCGA-A4-A5Y0-01 3 49695566 49695566 C T BSN Silent p.T2859T 0.55 TCGA-A4-A5Y0-01 3 50645901 50645901 C A CISH Missense_Mutation p.E65D 0.58 tolerated(0.26) benign(0.004) TCGA-A4-A5Y0-01 3 52380547 52380547 C A DNAH1 Missense_Mutation p.S572R 0.29 possibly_damaging(0.459) TCGA-A4-A5Y0-01 3 53886139 53886147 CCCTCTGGT - IL17RB In_Frame_Del p.P114_G116del 0.36 TCGA-A4-A5Y0-01 4 39435920 39435920 G T KLB Nonsense_Mutation p.E306* 0.40 TCGA-A4-A5Y0-01 4 85722839 85722839 C A WDFY3 Missense_Mutation p.R929L 0.44 deleterious(0) probably_damaging(0.988) TCGA-A4-A5Y0-01 5 178360141 178360141 A T ZFP2 3'UTR 0.41 TCGA-A4-A5Y0-01 5 179728377 179728377 G C GFPT2 3'UTR 0.61 TCGA-A4-A5Y0-01 5 33534943 33534943 C A ADAMTS12 Missense_Mutation p.S1534I 0.49 tolerated(0.09) benign(0.333) TCGA-A4-A5Y0-01 6 101075824 101075824 C A ASCC3 Missense_Mutation p.R1472L 0.41 deleterious(0) probably_damaging(0.999) TCGA-A4-A5Y0-01 6 14133946 14133946 C - CD83 Frame_Shift_Del p.A150Vfs*7 0.31 TCGA-A4-A5Y0-01 6 20490451 20490451 C G E2F3 Missense_Mutation p.N396K 0.51 tolerated(0.63) benign(0.045) TCGA-A4-A5Y0-01 6 29910554 29910554 T G HLA-A Missense_Mutation p.F32V 0.27 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-A4-A5Y0-01 6 32944714 32944714 G A BRD2 Splice_Site p.X400_splice 0.50 TCGA-A4-A5Y0-01 6 90392973 90392973 T G MDN1 Missense_Mutation p.K3994Q 0.41 benign(0.03) TCGA-A4-A5Y0-01 7 100320843 100320843 C T EPO 3'UTR 0.41 TCGA-A4-A5Y0-01 7 107807453 107807453 T C NRCAM Missense_Mutation p.M1127V 0.38 tolerated(0.6) benign(0.004) TCGA-A4-A5Y0-01 7 142750247 142750247 G C OR6V1 Missense_Mutation p.K270N 0.51 deleterious(0) probably_damaging(0.964) TCGA-A4-A5Y0-01 7 157177601 157177601 T C DNAJB6 Silent p.T173T 0.40 TCGA-A4-A5Y0-01 7 157177612 157177612 C T DNAJB6 Missense_Mutation p.S177F 0.42 tolerated(0.08) unknown(0) TCGA-A4-A5Y0-01 7 72420322 72420322 C T POM121 3'UTR 0.28 TCGA-A4-A5Y0-01 8 49833817 49833817 C G SNAI2 Missense_Mutation p.R3P 0.57 deleterious(0) benign(0.014) TCGA-A4-A5Y0-01 9 133579154 133579154 A - EXOSC2 Frame_Shift_Del p.E292Gfs*57 0.34 TCGA-A4-A5Y0-01 9 3301560 3301560 G A RFX3 Missense_Mutation p.L179F 0.51 deleterious(0.04) possibly_damaging(0.519) TCGA-A4-A5Y0-01 9 38397530 38397530 C T ALDH1B1 3'UTR 0.57 TCGA-A4-A5Y0-01 9 85637283 85637283 T G RASEF Missense_Mutation p.I213L 0.40 tolerated(0.31) benign(0.17) TCGA-A4-A5Y0-01 X 138857091 138857091 C G ATP11C Missense_Mutation p.E661D 0.58 tolerated(0.25) probably_damaging(0.927) TCGA-A4-A5Y0-01 X 153170562 153170563 CA - AVPR2 5'UTR 0.10 TCGA-A4-A5Y1-01 10 101370968 101370968 T A SLC25A28 Missense_Mutation p.T245S 0.30 tolerated(0.07) benign(0.3) TCGA-A4-A5Y1-01 10 17169853 17169853 C A CUBN Missense_Mutation p.S108I 0.44 deleterious(0) possibly_damaging(0.668) TCGA-A4-A5Y1-01 11 16010773 16010773 C A SOX6 Intron 0.42 TCGA-A4-A5Y1-01 11 2798240 2798240 C G KCNQ1 Silent p.P570P 0.28 TCGA-A4-A5Y1-01 11 30032894 30032894 T C KCNA4 Silent p.R444R 0.29 TCGA-A4-A5Y1-01 11 35684955 35684956 - T TRIM44 Frame_Shift_Ins p.E100* 0.24 TCGA-A4-A5Y1-01 11 46419222 46419222 G A AMBRA1 Silent p.G1135G 0.48 TCGA-A4-A5Y1-01 11 65486712 65486712 C G KAT5 3'UTR 0.46 TCGA-A4-A5Y1-01 12 21680692 21680692 G C C12orf39 Silent p.R59R 0.75 TCGA-A4-A5Y1-01 12 49436945 49436945 G A KMT2D Missense_Mutation p.A1853V 0.08 possibly_damaging(0.449) TCGA-A4-A5Y1-01 13 37679458 37679458 G A CSNK1A1L 5'UTR 0.16 TCGA-A4-A5Y1-01 14 23886422 23886422 C T MYH7 Missense_Mutation p.A1487T 0.40 deleterious(0.04) probably_damaging(0.955) TCGA-A4-A5Y1-01 14 24649411 24649411 C G REC8 3'UTR 0.38 TCGA-A4-A5Y1-01 14 51368558 51368558 C T ABHD12B Silent p.N264N 0.68 TCGA-A4-A5Y1-01 14 67787027 67787027 T C MPP5 Silent p.L484L 0.73 TCGA-A4-A5Y1-01 14 75248111 75248111 G A YLPM1 Nonsense_Mutation p.W455* 0.74 TCGA-A4-A5Y1-01 14 92195753 92195753 T C CATSPERB Missense_Mutation p.Y24C 0.46 deleterious(0.01) possibly_damaging(0.821) TCGA-A4-A5Y1-01 15 40913801 40913801 A T CASC5 Nonsense_Mutation p.R473* 0.41 TCGA-A4-A5Y1-01 15 59344604 59344604 G T RNF111 Missense_Mutation p.E327D 0.41 deleterious(0) benign(0.129) TCGA-A4-A5Y1-01 15 59664764 59664764 A T MYO1E 5'UTR 0.40 TCGA-A4-A5Y1-01 15 62155703 62155703 C A VPS13C Nonsense_Mutation p.E3630* 0.35 TCGA-A4-A5Y1-01 15 68434644 68434644 A G PIAS1 Missense_Mutation p.K191E 0.38 deleterious(0) possibly_damaging(0.791) TCGA-A4-A5Y1-01 15 81517938 81517938 A G IL16 Silent p.T66T 0.25 TCGA-A4-A5Y1-01 15 89856164 89856164 A T FANCI Silent p.G1227G 0.42 TCGA-A4-A5Y1-01 16 1397801 1397801 C A BAIAP3 Missense_Mutation p.L1037M 0.66 deleterious(0.01) probably_damaging(1) TCGA-A4-A5Y1-01 16 15127164 15127164 C T PDXDC1 Missense_Mutation p.L574F 0.68 deleterious(0.01) benign(0.13) TCGA-A4-A5Y1-01 16 1877593 1877593 G T FAHD1 Silent p.L121L 0.15 TCGA-A4-A5Y1-01 16 2153522 2153522 T C PKD1 Missense_Mutation p.T2846A 0.76 probably_damaging(0.984) TCGA-A4-A5Y1-01 16 90127007 90127007 A T PRDM7 Missense_Mutation p.D325E 0.61 tolerated(1) probably_damaging(0.978) TCGA-A4-A5Y1-01 17 27899239 27899239 C G TP53I13 Missense_Mutation p.S198C 0.37 deleterious(0.03) possibly_damaging(0.878) TCGA-A4-A5Y1-01 17 29220519 29220519 A T ATAD5 Nonsense_Mutation p.K1550* 0.60 TCGA-A4-A5Y1-01 17 33902662 33902662 A T PEX12 3'UTR 0.59 TCGA-A4-A5Y1-01 17 3514081 3514081 G T SHPK Silent p.R404R 0.57 TCGA-A4-A5Y1-01 17 3808622 3808622 G C P2RX1 Missense_Mutation p.S59R 0.26 deleterious(0) possibly_damaging(0.456) TCGA-A4-A5Y1-01 17 4873373 4873373 G A CAMTA2 Missense_Mutation p.P1028S 0.25 tolerated(0.19) benign(0.014) TCGA-A4-A5Y1-01 18 10691260 10691260 T A PIEZO2 Nonsense_Mutation p.K2325* 0.27 TCGA-A4-A5Y1-01 18 20606136 20606136 C G RBBP8 Missense_Mutation p.P876R 0.25 deleterious(0.05) possibly_damaging(0.721) TCGA-A4-A5Y1-01 19 1481811 1481811 G A PCSK4 Missense_Mutation p.R739C 0.12 tolerated_low_confidence(0.08) benign(0.353) TCGA-A4-A5Y1-01 19 16688124 16688124 G C MED26 Missense_Mutation p.L173V 0.48 tolerated(0.41) probably_damaging(0.997) TCGA-A4-A5Y1-01 19 33168433 33168433 G A RGS9BP 3'UTR 0.22 TCGA-A4-A5Y1-01 19 36606539 36606539 A T TBCB Missense_Mutation p.K26M 0.44 deleterious(0) benign(0.211) TCGA-A4-A5Y1-01 19 40330915 40330915 G A FBL Silent p.V112V 0.28 TCGA-A4-A5Y1-01 19 51451945 51451945 T G KLK5 Missense_Mutation p.D226A 0.44 tolerated(0.05) benign(0.307) TCGA-A4-A5Y1-01 1 158261919 158261919 G A CD1C Missense_Mutation p.G125E 0.46 deleterious(0.05) benign(0.445) TCGA-A4-A5Y1-01 1 17046552 17046552 G A ESPNP RNA 0.40 TCGA-A4-A5Y1-01 1 182898789 182898789 G T SHCBP1L Missense_Mutation p.T392N 0.37 deleterious(0.01) benign(0.299) TCGA-A4-A5Y1-01 1 201104800 201104800 C T TMEM9 Missense_Mutation p.M181I 0.43 deleterious(0.02) benign(0.266) TCGA-A4-A5Y1-01 1 224468833 224468833 G A NVL Silent p.L652L 0.31 TCGA-A4-A5Y1-01 1 33957362 33957362 T A ZSCAN20 Intron 0.84 TCGA-A4-A5Y1-01 1 898747 898747 G A KLHL17 Silent p.V406V 0.70 TCGA-A4-A5Y1-01 1 898748 898748 G A KLHL17 Missense_Mutation p.E407K 0.70 deleterious(0) possibly_damaging(0.856) TCGA-A4-A5Y1-01 20 17417493 17417493 C T PCSK2 Missense_Mutation p.L284F 0.36 deleterious(0.02) benign(0.239) TCGA-A4-A5Y1-01 20 31892698 31892698 G A BPIFB1 Splice_Site p.X418_splice 0.37 TCGA-A4-A5Y1-01 20 62859303 62859303 A T MYT1 Missense_Mutation p.K885M 0.39 probably_damaging(0.968) TCGA-A4-A5Y1-01 21 31691828 31691828 G C KRTAP26-1 Missense_Mutation p.L176V 0.25 tolerated(0.43) benign(0.012) TCGA-A4-A5Y1-01 21 43410925 43410925 A G ZBTB21 3'UTR 0.40 TCGA-A4-A5Y1-01 22 22869192 22869192 T C ZNF280A Missense_Mutation p.I255V 0.84 tolerated(0.11) benign(0.002) TCGA-A4-A5Y1-01 22 50649114 50649114 C T SELO Silent p.Y375Y 0.70 TCGA-A4-A5Y1-01 2 173352476 173352476 A - ITGA6 Frame_Shift_Del p.S756Vfs*16 0.15 TCGA-A4-A5Y1-01 2 17847696 17847696 T G SMC6 Missense_Mutation p.Q1051P 0.50 deleterious(0) probably_damaging(0.99) TCGA-A4-A5Y1-01 2 179547441 179547441 T G TTN Missense_Mutation p.H11026P 0.53 TCGA-A4-A5Y1-01 2 182765617 182765618 - T SSFA2 Frame_Shift_Ins p.Y234Lfs*11 0.19 TCGA-A4-A5Y1-01 2 186671593 186671593 C T FSIP2 Nonsense_Mutation p.Q5943* 0.24 TCGA-A4-A5Y1-01 2 217724631 217724631 G A TNP1 Missense_Mutation p.R43W 0.48 tolerated_low_confidence(0.05) probably_damaging(0.998) TCGA-A4-A5Y1-01 2 228399580 228399580 C G AGFG1 Silent p.G372G 0.59 TCGA-A4-A5Y1-01 2 235943690 235943690 C T SH3BP4 Missense_Mutation p.P15L 0.39 deleterious_low_confidence(0.02) benign(0.157) TCGA-A4-A5Y1-01 3 137964017 137964040 CGGAAGAAGGTGAGTCTGGGAGAG - ARMC8 Splice_Site p.X362_splice 0.23 TCGA-A4-A5Y1-01 3 145939879 145939879 C A PLSCR4 Intron 0.24 TCGA-A4-A5Y1-01 3 151012432 151012432 A T GPR87 Missense_Mutation p.V201D 0.21 deleterious(0.05) possibly_damaging(0.643) TCGA-A4-A5Y1-01 3 196612951 196612952 - T SENP5 Frame_Shift_Ins p.C301Lfs*25 0.30 TCGA-A4-A5Y1-01 3 47098859 47098860 GC T SETD2 Frame_Shift_Del p.Q2139Nfs*8 0.39 TCGA-A4-A5Y1-01 4 123260393 123260393 T A KIAA1109 Missense_Mutation p.V4061E 0.55 benign(0.41) TCGA-A4-A5Y1-01 4 13602646 13602646 T G BOD1L1 Missense_Mutation p.S1960R 0.09 probably_damaging(0.965) TCGA-A4-A5Y1-01 4 183713663 183713663 C T TENM3 Silent p.V1946V 0.34 TCGA-A4-A5Y1-01 4 39851206 39851214 CTTCATAAA G PDS5A Frame_Shift_Del p.F1049Qfs*17 0.37 TCGA-A4-A5Y1-01 5 140037217 140037217 C T IK Missense_Mutation p.R294C 0.22 deleterious(0) probably_damaging(0.999) TCGA-A4-A5Y1-01 5 140751665 140751665 G A PCDHGB3 Silent p.G568G 0.25 TCGA-A4-A5Y1-01 5 17926935 17926935 G T RP11-454P21.1 Intron 0.32 TCGA-A4-A5Y1-01 5 59893587 59893587 C T DEPDC1B Missense_Mutation p.R528Q 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-A4-A5Y1-01 5 68660738 68660738 C A TAF9 3'UTR 0.50 TCGA-A4-A5Y1-01 5 77521385 77521385 A C AP3B1 Missense_Mutation p.L195R 0.62 deleterious(0) probably_damaging(0.998) TCGA-A4-A5Y1-01 6 24836059 24836059 C T FAM65B Missense_Mutation p.E715K 0.30 deleterious(0.01) benign(0.341) TCGA-A4-A5Y1-01 6 26056096 26056096 T C HIST1H1C Silent p.K187K 0.09 TCGA-A4-A5Y1-01 6 34059858 34059858 C T GRM4 Missense_Mutation p.A180T 0.51 deleterious(0) possibly_damaging(0.687) TCGA-A4-A5Y1-01 7 103050896 103050896 G C SLC26A5 Missense_Mutation p.S224C 0.31 deleterious(0) probably_damaging(0.94) TCGA-A4-A5Y1-01 7 131887415 131887415 C T PLXNA4 Missense_Mutation p.R859H 0.19 deleterious(0.03) possibly_damaging(0.795) TCGA-A4-A5Y1-01 8 74464271 74464271 A G STAU2 Silent p.Y502Y 0.43 TCGA-A4-A5Y1-01 9 107267461 107267461 T G OR13F1 Missense_Mutation p.I306M 0.42 tolerated(0.12) benign(0.008) TCGA-A4-A5Y1-01 9 131379924 131379924 A G SPTAN1 Missense_Mutation p.K1788R 0.34 deleterious(0.02) probably_damaging(1) TCGA-A4-A5Y1-01 9 140710514 140710514 G A EHMT1 Missense_Mutation p.R1125K 0.48 tolerated(0.32) benign(0.002) TCGA-A4-A5Y1-01 9 15468982 15468982 G - PSIP1 Frame_Shift_Del p.H393Qfs*4 0.31 TCGA-A4-A5Y1-01 9 17298385 17298385 T G CNTLN Intron 0.08 TCGA-A4-A5Y1-01 X 12708337 12708337 G T FRMPD4 Missense_Mutation p.E235D 0.86 tolerated(0.26) possibly_damaging(0.883) TCGA-A4-A5Y1-01 X 1407702 1407702 G T CSF2RA Missense_Mutation p.D132Y 0.32 deleterious(0.01) probably_damaging(0.973) TCGA-A4-A5Y1-01 X 153198018 153198018 C T NAA10 Missense_Mutation p.V67M 0.36 deleterious(0.01) possibly_damaging(0.86) TCGA-A4-A5Y1-01 X 153700940 153700940 C T PLXNA3 Missense_Mutation p.T1843M 0.87 tolerated(0.16) benign(0.409) TCGA-A4-A6HP-01 10 103906723 103906723 G A PPRC1 Missense_Mutation p.R1325H 0.28 tolerated(0.31) benign(0.16) TCGA-A4-A6HP-01 10 112655819 112655819 A G PDCD4 Silent p.K441K 0.31 TCGA-A4-A6HP-01 10 71391490 71391490 G C C10orf35 5'UTR 0.20 TCGA-A4-A6HP-01 10 98741939 98741939 T G C10orf12 Silent p.S264S 0.32 TCGA-A4-A6HP-01 11 108043550 108043550 C T NPAT Missense_Mutation p.D721N 0.33 tolerated(0.42) benign(0.006) TCGA-A4-A6HP-01 11 194568 194568 C G SCGB1C1 3'UTR 0.28 TCGA-A4-A6HP-01 11 3733714 3733714 A G NUP98 Intron 0.32 TCGA-A4-A6HP-01 11 63065116 63065116 A T SLC22A10 Silent p.G249G 0.39 TCGA-A4-A6HP-01 11 63071636 63071636 A G SLC22A10 Missense_Mutation p.T448A 0.34 tolerated(1) benign(0.002) TCGA-A4-A6HP-01 11 65347841 65347841 G T EHBP1L1 Missense_Mutation p.M175I 0.13 deleterious(0) probably_damaging(0.954) TCGA-A4-A6HP-01 12 120984362 120984362 C A RNF10 Missense_Mutation p.S104R 0.25 tolerated_low_confidence(0.4) possibly_damaging(0.649) TCGA-A4-A6HP-01 12 123214112 123214112 C T HCAR1 Missense_Mutation p.A259T 0.43 deleterious(0.04) possibly_damaging(0.753) TCGA-A4-A6HP-01 12 131471648 131471648 T G GPR133 Missense_Mutation p.W167G 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-A4-A6HP-01 12 23757377 23757377 A G SOX5 Missense_Mutation p.S370P 0.27 tolerated(0.23) benign(0.003) TCGA-A4-A6HP-01 12 46322677 46322678 AT - SCAF11 Intron 0.32 TCGA-A4-A6HP-01 12 49168249 49168249 G A ADCY6 Missense_Mutation p.A740V 0.47 tolerated(0.6) benign(0.004) TCGA-A4-A6HP-01 12 54447788 54447788 T A HOXC4 Missense_Mutation p.Y28N 0.19 deleterious(0) probably_damaging(0.99) TCGA-A4-A6HP-01 13 113474213 113474213 G A ATP11A Splice_Site p.X225_splice 0.29 TCGA-A4-A6HP-01 13 40251678 40251678 A G COG6 Missense_Mutation p.S168G 0.30 tolerated(0.37) benign(0.001) TCGA-A4-A6HP-01 13 98667795 98667795 A T IPO5 Silent p.V797V 0.37 TCGA-A4-A6HP-01 14 74180901 74180901 C T PNMA1 5'UTR 0.06 TCGA-A4-A6HP-01 14 74970233 74970233 G A LTBP2 Silent p.C1553C 0.09 TCGA-A4-A6HP-01 14 92413703 92413703 G A FBLN5 5'UTR 0.37 TCGA-A4-A6HP-01 15 43653718 43653718 T C ZSCAN29 Silent p.K704K 0.28 TCGA-A4-A6HP-01 15 82575198 82575198 C A FAM154B Missense_Mutation p.T331K 0.33 deleterious(0.01) possibly_damaging(0.827) TCGA-A4-A6HP-01 15 85407685 85407685 G A ALPK3 Silent p.L1706L 0.37 TCGA-A4-A6HP-01 16 2011289 2011289 A T NDUFB10 Missense_Mutation p.D89V 0.34 deleterious(0) probably_damaging(0.983) TCGA-A4-A6HP-01 16 2821882 2821882 G C TCEB2 Intron 0.21 TCGA-A4-A6HP-01 16 3712967 3712967 G A TRAP1 Silent p.A570A 0.36 TCGA-A4-A6HP-01 16 72011209 72011209 C G PKD1L3 RNA 0.40 TCGA-A4-A6HP-01 16 75256870 75256870 A G CTRB1 Missense_Mutation p.K54E 0.30 tolerated(0.4) benign(0.001) TCGA-A4-A6HP-01 17 12898190 12898190 A G ELAC2 Silent p.C640C 0.49 TCGA-A4-A6HP-01 17 18541949 18541949 A G TBC1D28 Silent p.Y88Y 0.42 TCGA-A4-A6HP-01 17 38282491 38282491 A G MSL1 Missense_Mutation p.N12S 0.48 tolerated(1) benign(0.026) TCGA-A4-A6HP-01 17 3980188 3980189 - T ZZEF1 Frame_Shift_Ins p.V1029Sfs*42 0.34 TCGA-A4-A6HP-01 17 46703276 46703276 T C HOXB9 Missense_Mutation p.E119G 0.25 tolerated(0.07) benign(0.388) TCGA-A4-A6HP-01 17 46703277 46703277 C T HOXB9 Missense_Mutation p.E119K 0.24 deleterious(0.05) benign(0.294) TCGA-A4-A6HP-01 17 5138062 5138062 T A SCIMP 5'UTR 0.23 TCGA-A4-A6HP-01 17 58503225 58503225 G A C17orf64 Missense_Mutation p.D45N 0.50 tolerated(0.06) possibly_damaging(0.529) TCGA-A4-A6HP-01 17 7748926 7748926 C A KDM6B Silent p.A18A 0.22 TCGA-A4-A6HP-01 17 7750199 7750199 A G KDM6B Silent p.P258P 0.24 TCGA-A4-A6HP-01 18 44416377 44416377 G A PIAS2 Missense_Mutation p.T382I 0.12 deleterious(0) probably_damaging(0.995) TCGA-A4-A6HP-01 19 15226103 15226103 A G ILVBL Missense_Mutation p.I620T 0.29 deleterious(0) probably_damaging(0.973) TCGA-A4-A6HP-01 19 30018224 30018224 T A VSTM2B Silent p.I63I 0.44 TCGA-A4-A6HP-01 19 30018225 30018225 C A VSTM2B Missense_Mutation p.Q64K 0.37 deleterious(0) probably_damaging(0.981) TCGA-A4-A6HP-01 19 31040126 31040126 C G ZNF536 Missense_Mutation p.D1200E 0.36 tolerated_low_confidence(0.72) benign(0.015) TCGA-A4-A6HP-01 19 36727612 36727612 C A ZNF146 Missense_Mutation p.H90Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-A4-A6HP-01 19 47569625 47569625 G - ZC3H4 Frame_Shift_Del p.C1302Afs*25 0.15 TCGA-A4-A6HP-01 19 49485593 49485593 A G GYS1 Silent p.F327F 0.36 TCGA-A4-A6HP-01 19 55740079 55740079 T C TMEM86B Missense_Mutation p.K11E 0.37 tolerated(0.27) benign(0.018) TCGA-A4-A6HP-01 19 58301686 58301686 G T ZNF586 Missense_Mutation p.E27D 0.22 tolerated(0.08) probably_damaging(0.922) TCGA-A4-A6HP-01 19 9639036 9639036 A T ZNF426 3'UTR 0.36 TCGA-A4-A6HP-01 1 144874782 144874782 C T PDE4DIP Missense_Mutation p.S1609N 0.14 deleterious(0.02) possibly_damaging(0.759) TCGA-A4-A6HP-01 1 150039897 150039897 A G VPS45 5'UTR 0.05 TCGA-A4-A6HP-01 1 155258315 155258315 T C HCN3 3'UTR 0.37 TCGA-A4-A6HP-01 1 156108215 156108215 T A LMNA Intron 0.41 TCGA-A4-A6HP-01 1 201958580 201958590 TTCCAGATGTG - RNPEP Frame_Shift_Del p.F220Sfs*19 0.22 TCGA-A4-A6HP-01 1 207881585 207881585 G T CR1L Missense_Mutation p.S464I 0.22 deleterious(0.01) possibly_damaging(0.787) TCGA-A4-A6HP-01 1 207881586 207881586 C G CR1L Missense_Mutation p.S464R 0.23 deleterious(0.02) benign(0.029) TCGA-A4-A6HP-01 1 209849372 209849372 A G G0S2 3'UTR 0.40 TCGA-A4-A6HP-01 1 225965621 225965621 T C SRP9 5'UTR 0.15 TCGA-A4-A6HP-01 1 228520936 228520936 G C OBSCN Missense_Mutation p.E6213D 0.35 benign(0.238) TCGA-A4-A6HP-01 1 38343988 38343988 A G INPP5B Missense_Mutation p.C517R 0.22 deleterious(0) probably_damaging(0.999) TCGA-A4-A6HP-01 1 55059680 55059687 GCCACCTT - ACOT11 Frame_Shift_Del p.A147Rfs*30 0.30 TCGA-A4-A6HP-01 1 6659179 6659179 T C KLHL21 Missense_Mutation p.D452G 0.33 tolerated(0.28) benign(0.009) TCGA-A4-A6HP-01 1 78959108 78959108 T C PTGFR Missense_Mutation p.L227P 0.31 deleterious(0) probably_damaging(1) TCGA-A4-A6HP-01 1 78959111 78959111 T C PTGFR Missense_Mutation p.L228S 0.30 deleterious(0) probably_damaging(0.932) TCGA-A4-A6HP-01 1 987003 987003 C A AGRN Missense_Mutation p.F1847L 0.37 deleterious(0.04) benign(0.326) TCGA-A4-A6HP-01 20 13830099 13830099 T A SEL1L2 3'UTR 0.31 TCGA-A4-A6HP-01 20 19998643 19998643 A G NAA20 Intron 0.28 TCGA-A4-A6HP-01 20 30156952 30156952 C T HM13 Missense_Mutation p.A404V 0.38 tolerated_low_confidence(0.48) benign(0) TCGA-A4-A6HP-01 20 32878681 32878681 C T AHCY Missense_Mutation p.D208N 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A4-A6HP-01 20 45217868 45217868 A G SLC13A3 Missense_Mutation p.I316T 0.23 tolerated(0.63) benign(0.297) TCGA-A4-A6HP-01 21 45563146 45563146 T G C21orf33 Missense_Mutation p.V194G 0.40 deleterious(0) probably_damaging(0.987) TCGA-A4-A6HP-01 22 30403186 30403186 A C MTMR3 Missense_Mutation p.H252P 0.29 deleterious(0) probably_damaging(1) TCGA-A4-A6HP-01 22 37898635 37898635 C G CARD10 Silent p.R587R 0.32 TCGA-A4-A6HP-01 22 38981984 38981988 ACAAC G FAM227A Intron 0.41 TCGA-A4-A6HP-01 2 130912744 130912744 G A SMPD4 Missense_Mutation p.P499S 0.25 tolerated(0.09) probably_damaging(0.932) TCGA-A4-A6HP-01 2 168103277 168103277 T A XIRP2 Missense_Mutation p.L1792Q 0.27 probably_damaging(0.995) TCGA-A4-A6HP-01 2 183594619 183594619 G T DNAJC10 Silent p.V226V 0.32 TCGA-A4-A6HP-01 2 196602570 196602570 G T DNAH7 3'UTR 0.27 TCGA-A4-A6HP-01 2 198285205 198285205 T A SF3B1 Missense_Mutation p.K121M 0.35 deleterious(0.03) benign(0.006) TCGA-A4-A6HP-01 2 198285207 198285207 T C SF3B1 Silent p.K120K 0.35 TCGA-A4-A6HP-01 2 198365881 198365881 A G HSPE1-MOB4 Silent p.G29G 0.38 TCGA-A4-A6HP-01 2 201768315 201768315 C A NIF3L1 Missense_Mutation p.L350I 0.36 deleterious(0.02) probably_damaging(0.993) TCGA-A4-A6HP-01 2 219529245 219529245 G A RNF25 Missense_Mutation p.A272V 0.09 tolerated(0.81) benign(0) TCGA-A4-A6HP-01 2 234580827 234580828 - T UGT1A9 Frame_Shift_Ins p.E84Gfs*32 0.25 TCGA-A4-A6HP-01 2 55191764 55191764 C A EML6 Missense_Mutation p.F1796L 0.38 tolerated(0.18) benign(0.049) TCGA-A4-A6HP-01 2 70039804 70039804 A T ANXA4 Missense_Mutation p.N166I 0.36 tolerated(0.17) benign(0.06) TCGA-A4-A6HP-01 2 71360588 71360588 T G MPHOSPH10 Missense_Mutation p.I217R 0.41 deleterious(0.02) benign(0.364) TCGA-A4-A6HP-01 2 86371557 86371557 T A IMMT Missense_Mutation p.E704V 0.31 deleterious(0) probably_damaging(0.999) TCGA-A4-A6HP-01 3 120320001 120320001 A G NDUFB4 Missense_Mutation p.N75S 0.40 tolerated(0.14) benign(0.219) TCGA-A4-A6HP-01 3 160964158 160964158 C T NMD3 Missense_Mutation p.S351F 0.40 deleterious(0) benign(0.414) TCGA-A4-A6HP-01 3 183602604 183602604 A G PARL Missense_Mutation p.W11R 0.35 tolerated_low_confidence(0.06) benign(0.01) TCGA-A4-A6HP-01 3 195517971 195517971 T A MUC4 Missense_Mutation p.E160D 0.41 unknown(0) TCGA-A4-A6HP-01 3 27233518 27233518 A T NEK10 Splice_Site p.X835_splice 0.32 TCGA-A4-A6HP-01 3 47374712 47374712 G T KLHL18 Missense_Mutation p.E222D 0.27 tolerated(0.24) benign(0.058) TCGA-A4-A6HP-01 3 47374713 47374713 C A KLHL18 Missense_Mutation p.L223M 0.29 deleterious(0.01) probably_damaging(0.977) TCGA-A4-A6HP-01 3 69072460 69072460 T C TMF1 Silent p.Q1050Q 0.30 TCGA-A4-A6HP-01 4 113303701 113303701 A T ALPK1 Missense_Mutation p.Q90L 0.38 deleterious(0.02) benign(0.322) TCGA-A4-A6HP-01 4 1369834 1369834 G A UVSSA Silent p.A482A 0.37 TCGA-A4-A6HP-01 4 166000935 166000935 G T TMEM192 Missense_Mutation p.L231I 0.33 deleterious(0.01) possibly_damaging(0.519) TCGA-A4-A6HP-01 4 436719 436719 A G ZNF721 Missense_Mutation p.S513P 0.31 tolerated(0.2) possibly_damaging(0.625) TCGA-A4-A6HP-01 5 149213062 149213062 G A PPARGC1B Missense_Mutation p.V476M 0.33 deleterious(0) probably_damaging(0.999) TCGA-A4-A6HP-01 5 153755929 153755929 C T GALNT10 Nonsense_Mutation p.R221* 0.38 TCGA-A4-A6HP-01 5 173317154 173317154 T G CPEB4 Missense_Mutation p.L140V 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-A4-A6HP-01 5 176018324 176018324 G A CDHR2 Missense_Mutation p.R1218Q 0.37 tolerated(0.3) benign(0.361) TCGA-A4-A6HP-01 6 10415335 10415335 A G TFAP2A 5'UTR 0.09 TCGA-A4-A6HP-01 6 11575733 11575733 G T TMEM170B Missense_Mutation p.G113V 0.27 deleterious(0) probably_damaging(0.988) TCGA-A4-A6HP-01 6 139135653 139135653 T C ECT2L Missense_Mutation p.I31T 0.39 deleterious(0) possibly_damaging(0.662) TCGA-A4-A6HP-01 6 139694869 139694869 A G CITED2 Silent p.H71H 0.31 TCGA-A4-A6HP-01 6 31626752 31626752 T C C6orf47 3'UTR 0.26 TCGA-A4-A6HP-01 6 73017054 73017055 AT - RIMS1 Frame_Shift_Del p.D1315Afs*8 0.20 TCGA-A4-A6HP-01 6 7583589 7583589 G A DSP Missense_Mutation p.V2032I 0.28 benign(0.214) TCGA-A4-A6HP-01 6 97345689 97345689 A T NDUFAF4 5'UTR 0.26 TCGA-A4-A6HP-01 7 105189036 105189036 A - RINT1 Frame_Shift_Del p.K293Nfs*18 0.25 TCGA-A4-A6HP-01 7 12375822 12375822 A C VWDE Missense_Mutation p.I1533M 0.44 deleterious(0) possibly_damaging(0.873) TCGA-A4-A6HP-01 7 127991277 127991277 C G PRRT4 Missense_Mutation p.G778A 0.40 tolerated(0.55) benign(0.232) TCGA-A4-A6HP-01 7 150070540 150070540 A G REPIN1 3'Flank 0.45 TCGA-A4-A6HP-01 7 4841357 4841357 G A RADIL Silent p.G923G 0.41 TCGA-A4-A6HP-01 8 124992806 124992806 G A FER1L6 Missense_Mutation p.E389K 0.32 deleterious(0) probably_damaging(0.999) TCGA-A4-A6HP-01 8 42977953 42977953 A G POMK Missense_Mutation p.E329G 0.34 deleterious(0.03) benign(0.013) TCGA-A4-A6HP-01 8 7308688 7308688 G T SPAG11B Intron 0.03 TCGA-A4-A6HP-01 9 107578436 107578436 C T ABCA1 Silent p.T1242T 0.42 TCGA-A4-A6HP-01 9 131095205 131095205 G A COQ4 Silent p.P203P 0.38 TCGA-A4-A6HP-01 9 136227264 136227264 G T SURF2 Missense_Mutation p.R214M 0.35 possibly_damaging(0.87) TCGA-A4-A6HP-01 9 136230189 136230189 A G SURF4 3'UTR 0.32 TCGA-A4-A6HP-01 9 139407915 139407915 G T NOTCH1 Missense_Mutation p.P761H 0.29 deleterious(0) probably_damaging(0.999) TCGA-A4-A6HP-01 9 33443353 33443354 - A AQP3 Frame_Shift_Ins p.A116Cfs*10 0.25 TCGA-A4-A6HP-01 9 37441549 37441549 G T ZBTB5 Missense_Mutation p.L334M 0.25 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-A4-A6HP-01 X 100098334 100098334 T G NOX1 3'UTR 0.09 TCGA-A4-A6HP-01 X 152613356 152613356 T A ZNF275 3'UTR 0.73 TCGA-A4-A772-01 11 111473373 111473373 G A SIK2 Missense_Mutation p.G29D 0.07 deleterious(0) probably_damaging(1) TCGA-A4-A772-01 11 46334184 46334184 C T CREB3L1 Missense_Mutation p.R309C 0.42 deleterious(0) probably_damaging(0.995) TCGA-A4-A772-01 11 62563986 62563986 T C NXF1 Missense_Mutation p.H411R 0.43 deleterious(0) probably_damaging(0.999) TCGA-A4-A772-01 11 88070840 88070840 T C CTSC Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0.01) benign(0.354) TCGA-A4-A772-01 12 120984221 120984221 C T RNF10 Silent p.S57S 0.51 TCGA-A4-A772-01 12 125397821 125397821 G A UBC Missense_Mutation p.T166I 0.05 tolerated(0.05) probably_damaging(0.989) TCGA-A4-A772-01 12 32145476 32145476 G A KIAA1551 3'UTR 0.25 TCGA-A4-A772-01 12 32145477 32145477 A G KIAA1551 3'UTR 0.25 TCGA-A4-A772-01 12 33003716 33003716 A T PKP2 Silent p.T454T 0.21 TCGA-A4-A772-01 13 101287287 101287287 G T TMTC4 Silent p.T455T 0.42 TCGA-A4-A772-01 13 95131273 95131273 G T DCT Missense_Mutation p.N79K 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-A4-A772-01 13 96577955 96577955 A T UGGT2 Silent p.L758L 0.04 TCGA-A4-A772-01 14 106208457 106208457 T G IGHG1 Missense_Mutation p.D148A 0.05 deleterious(0) possibly_damaging(0.76) TCGA-A4-A772-01 14 23240318 23240318 T C OXA1L Missense_Mutation p.I404T 0.42 deleterious(0) probably_damaging(0.915) TCGA-A4-A772-01 14 24656090 24656090 G T IPO4 Nonsense_Mutation p.C250* 0.26 TCGA-A4-A772-01 14 95053705 95053705 G A SERPINA5 Silent p.Q2Q 0.48 TCGA-A4-A772-01 15 42142086 42142086 G - SPTBN5 Frame_Shift_Del p.R3665Gfs*33 0.29 TCGA-A4-A772-01 17 17209883 17209883 A T NT5M Silent p.S98S 0.21 TCGA-A4-A772-01 17 41859202 41859202 G A C17orf105 Missense_Mutation p.A86T 0.03 deleterious(0.01) probably_damaging(0.913) TCGA-A4-A772-01 17 45822561 45822561 G C TBX21 Missense_Mutation p.E479D 0.50 tolerated(0.27) benign(0.002) TCGA-A4-A772-01 17 48755182 48755182 G A ABCC3 Silent p.S1152S 0.30 TCGA-A4-A772-01 17 56388456 56388456 G A BZRAP1 Missense_Mutation p.A1067V 0.06 tolerated(0.61) benign(0.017) TCGA-A4-A772-01 19 10738606 10738606 T C SLC44A2 Silent p.H57H 0.39 TCGA-A4-A772-01 19 15838984 15838984 T G OR10H2 Missense_Mutation p.L44R 0.43 deleterious(0) probably_damaging(0.933) TCGA-A4-A772-01 19 18277937 18277937 C - PIK3R2 Intron 0.23 TCGA-A4-A772-01 19 2248577 2248577 C T SF3A2 3'UTR 0.37 TCGA-A4-A772-01 19 35775707 35775707 G T HAMP Nonsense_Mutation p.E36* 0.23 TCGA-A4-A772-01 1 109338883 109338883 G A STXBP3 Missense_Mutation p.G380R 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-A4-A772-01 1 155225859 155225859 A C SCAMP3 3'UTR 0.62 TCGA-A4-A772-01 1 156911226 156911226 C T ARHGEF11 Splice_Site p.X1151_splice 0.35 TCGA-A4-A772-01 1 168550611 168550611 T C XCL1 3'UTR 0.44 TCGA-A4-A772-01 1 223989924 223989924 C - TP53BP2 Frame_Shift_Del p.K374Sfs*18 0.26 TCGA-A4-A772-01 1 226110029 226110029 C T RP4-559A3.7 Missense_Mutation p.V65I 0.26 tolerated_low_confidence(0.09) benign(0.284) TCGA-A4-A772-01 1 52260504 52260504 T C NRD1 Missense_Mutation p.Y944C 0.38 tolerated(0.06) benign(0.099) TCGA-A4-A772-01 1 62626789 62626789 T A INADL 3'UTR 0.62 TCGA-A4-A772-01 1 76378456 76378456 G A MSH4 Missense_Mutation p.A899T 0.27 deleterious(0.04) benign(0.196) TCGA-A4-A772-01 20 33586408 33586408 G T MYH7B Silent p.R1365R 0.45 TCGA-A4-A772-01 20 34085785 34085785 C G CEP250 Missense_Mutation p.L1182V 0.20 probably_damaging(0.999) TCGA-A4-A772-01 20 61299155 61299155 C A SLCO4A1 Missense_Mutation p.Q511K 0.36 tolerated(0.93) benign(0.063) TCGA-A4-A772-01 20 61439544 61439544 C A OGFR Intron 0.38 TCGA-A4-A772-01 22 37257147 37257150 GAGG - NCF4 5'UTR 0.47 TCGA-A4-A772-01 22 38153684 38153684 G A TRIOBP Missense_Mutation p.A1918T 0.47 tolerated(0.1) possibly_damaging(0.504) TCGA-A4-A772-01 2 114513036 114513036 C G SLC35F5 Missense_Mutation p.K42N 0.40 tolerated_low_confidence(0.16) benign(0.007) TCGA-A4-A772-01 2 135815643 135815643 A G RAB3GAP1 Missense_Mutation p.K46R 0.33 tolerated(0.37) benign(0.001) TCGA-A4-A772-01 2 159488407 159488407 T A PKP4 Silent p.T432T 0.23 TCGA-A4-A772-01 2 163256852 163256852 C T KCNH7 Missense_Mutation p.G752S 0.30 deleterious(0.03) probably_damaging(0.927) TCGA-A4-A772-01 2 179642594 179642594 A C TTN Silent p.P1439P 0.05 TCGA-A4-A772-01 3 113795727 113795727 C T QTRTD1 Silent p.T240T 0.20 TCGA-A4-A772-01 3 120321109 120321109 T A NDUFB4 Missense_Mutation p.S128T 0.43 tolerated(0.24) benign(0.225) TCGA-A4-A772-01 3 14526398 14526417 AAGGGAACCCAACCGCTGGG - SLC6A6 Frame_Shift_Del p.R583Cfs*53 0.35 TCGA-A4-A772-01 3 14724106 14724106 G A C3orf20 5'UTR 0.21 TCGA-A4-A772-01 3 43073936 43073936 C T FAM198A Missense_Mutation p.R61W 0.05 tolerated_low_confidence(0.19) benign(0.006) TCGA-A4-A772-01 3 55768866 55768866 T C ERC2 Missense_Mutation p.K882R 0.05 tolerated(0.12) possibly_damaging(0.884) TCGA-A4-A772-01 3 58494718 58494718 A C ACOX2 Missense_Mutation p.F629V 0.23 deleterious(0.03) possibly_damaging(0.902) TCGA-A4-A772-01 3 86114787 86114787 G A CADM2 Missense_Mutation p.D368N 0.55 deleterious(0.02) probably_damaging(0.94) TCGA-A4-A772-01 5 106763191 106763191 G A EFNA5 Missense_Mutation p.H49Y 0.41 deleterious(0.02) possibly_damaging(0.674) TCGA-A4-A772-01 5 61602219 61602219 A C KIF2A 5'Flank 0.24 TCGA-A4-A772-01 6 169632105 169632105 G A THBS2 Silent p.C707C 0.07 TCGA-A4-A772-01 6 27277799 27277799 G A POM121L2 Silent p.S717S 0.36 TCGA-A4-A772-01 6 33179580 33179580 G A RING1 Missense_Mutation p.R307Q 0.40 tolerated(0.53) unknown(0) TCGA-A4-A772-01 7 142658912 142658912 T G KEL Silent p.A17A 0.53 TCGA-A4-A772-01 7 48654963 48654963 A G ABCA13 Missense_Mutation p.I4943V 0.29 benign(0.166) TCGA-A4-A772-01 8 105509750 105509750 C G LRP12 Missense_Mutation p.V344L 0.41 tolerated(0.33) probably_damaging(0.975) TCGA-A4-A772-01 9 138589408 138589408 C G SOHLH1 Silent p.S137S 0.31 TCGA-A4-A772-01 9 140952502 140952502 G C CACNA1B Missense_Mutation p.V1370L 0.33 deleterious(0.04) probably_damaging(0.961) TCGA-A4-A772-01 9 86004612 86004615 TTTG - FRMD3 Frame_Shift_Del p.K53Gfs*44 0.36 TCGA-A4-A772-01 X 7894062 7894062 C G PNPLA4 Silent p.V33V 0.18 TCGA-A4-A7UZ-01 10 102824381 102824381 G T KAZALD1 Missense_Mutation p.A266S 0.13 deleterious(0) probably_damaging(1) TCGA-A4-A7UZ-01 10 103900008 103900008 A T PPRC1 Missense_Mutation p.Q581H 0.20 deleterious_low_confidence(0.05) benign(0.116) TCGA-A4-A7UZ-01 10 74700949 74700949 C A PLA2G12B Silent p.L148L 0.06 TCGA-A4-A7UZ-01 10 90122460 90122461 - T RNLS Frame_Shift_Ins p.Q184Afs*18 0.08 TCGA-A4-A7UZ-01 11 112019383 112019384 AG - IL18 Frame_Shift_Del p.S101Cfs*4 0.21 TCGA-A4-A7UZ-01 11 113629365 113629365 T A ZW10 Missense_Mutation p.K215I 0.22 deleterious(0.04) benign(0.058) TCGA-A4-A7UZ-01 11 64085710 64085710 C T PRDX5 Missense_Mutation p.A8V 0.35 tolerated_low_confidence(1) benign(0) TCGA-A4-A7UZ-01 11 64897359 64897359 C T SYVN1 Silent p.A479A 0.25 TCGA-A4-A7UZ-01 11 93796840 93796840 G T HEPHL1 Missense_Mutation p.K194N 0.24 deleterious(0.03) probably_damaging(0.969) TCGA-A4-A7UZ-01 12 101514351 101514351 T G ANO4 Missense_Mutation p.L840R 0.26 deleterious(0) probably_damaging(1) TCGA-A4-A7UZ-01 12 111951273 111951273 G - ATXN2 Frame_Shift_Del p.I643Yfs*5 0.14 TCGA-A4-A7UZ-01 12 49259581 49259581 A C RND1 5'UTR 0.16 TCGA-A4-A7UZ-01 12 50571415 50571415 A - LIMA1 Frame_Shift_Del p.V572Afs*3 0.26 TCGA-A4-A7UZ-01 12 50594621 50594621 T C LIMA1 Missense_Mutation p.E304G 0.20 deleterious(0.05) benign(0.062) TCGA-A4-A7UZ-01 13 29675108 29675108 G T MTUS2 Splice_Site p.X892_splice 0.26 TCGA-A4-A7UZ-01 14 20944903 20944903 T G PNP 3'UTR 0.25 TCGA-A4-A7UZ-01 14 24786273 24786273 G T LTB4R 3'UTR 0.23 TCGA-A4-A7UZ-01 14 45370100 45370100 C T C14orf28 Silent p.Y154Y 0.34 TCGA-A4-A7UZ-01 14 71572155 71572155 T C PCNX Missense_Mutation p.L2100P 0.17 tolerated(0.34) possibly_damaging(0.877) TCGA-A4-A7UZ-01 15 56992974 56992974 T C ZNF280D Intron 0.64 TCGA-A4-A7UZ-01 15 65892192 65892192 G C VWA9 Missense_Mutation p.R79G 0.28 tolerated(0.08) possibly_damaging(0.792) TCGA-A4-A7UZ-01 15 79265658 79265658 G C RASGRF1 Missense_Mutation p.S1216C 0.26 tolerated(0.06) benign(0.354) TCGA-A4-A7UZ-01 16 14758841 14758841 C T BFAR Missense_Mutation p.T358I 0.21 deleterious(0.03) probably_damaging(0.99) TCGA-A4-A7UZ-01 16 1550652 1550652 G A TELO2 Silent p.E411E 0.19 TCGA-A4-A7UZ-01 16 1550653 1550653 G T TELO2 Missense_Mutation p.V412F 0.20 deleterious(0.02) benign(0.284) TCGA-A4-A7UZ-01 16 16228223 16228223 G A ABCC1 Missense_Mutation p.R1328Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-A4-A7UZ-01 16 27561107 27561108 - A GTF3C1 Frame_Shift_Ins p.L37Afs*25 0.30 TCGA-A4-A7UZ-01 16 30531224 30531224 T G ITGAL Missense_Mutation p.L1092R 0.14 deleterious(0) possibly_damaging(0.853) TCGA-A4-A7UZ-01 16 47195736 47195736 C T ITFG1 Missense_Mutation p.R529Q 0.13 deleterious(0.01) possibly_damaging(0.894) TCGA-A4-A7UZ-01 16 53504377 53504377 C T RBL2 Silent p.S776S 0.25 TCGA-A4-A7UZ-01 16 555550 555550 G T RAB11FIP3 Silent p.L474L 0.15 TCGA-A4-A7UZ-01 16 68344822 68344832 GCCTCCATAGT - SLC7A6OS Missense_Mutation 0.18 TCGA-A4-A7UZ-01 16 7703911 7703911 G A RBFOX1 Silent p.R304R 0.38 TCGA-A4-A7UZ-01 17 16455883 16455885 GAA - ZNF287 In_Frame_Del p.L524del 0.14 TCGA-A4-A7UZ-01 17 34073315 34073330 CTGACGAGGTACACTG - GAS2L2 Frame_Shift_Del p.Q396Efs*100 0.11 TCGA-A4-A7UZ-01 17 35620716 35620716 C G ACACA Missense_Mutation p.A401P 0.08 deleterious(0) possibly_damaging(0.766) TCGA-A4-A7UZ-01 17 35946557 35946557 T G SYNRG Missense_Mutation p.D114A 0.37 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-A4-A7UZ-01 17 41584425 41584426 AC - DHX8 Frame_Shift_Del p.T595Nfs*54 0.14 TCGA-A4-A7UZ-01 17 5424855 5424865 AGCAGTCACTT - NLRP1 Frame_Shift_Del p.S1255Hfs*7 0.12 TCGA-A4-A7UZ-01 17 7417258 7417260 CTC - POLR2A In_Frame_Del p.P1893del 0.17 TCGA-A4-A7UZ-01 18 56964141 56964141 T C CPLX4 Missense_Mutation p.N91S 0.05 tolerated(0.92) benign(0.006) TCGA-A4-A7UZ-01 18 73000853 73000853 T C TSHZ1 3'UTR 0.15 TCGA-A4-A7UZ-01 18 77013436 77013436 T G ATP9B Nonsense_Mutation p.L388* 0.23 TCGA-A4-A7UZ-01 19 50436188 50436188 C T ATF5 Missense_Mutation p.R230W 0.07 deleterious(0) probably_damaging(0.998) TCGA-A4-A7UZ-01 1 113236732 113236732 C T MOV10 Silent p.I411I 0.26 TCGA-A4-A7UZ-01 1 115488960 115488960 T C SYCP1 Silent p.Y735Y 0.26 TCGA-A4-A7UZ-01 1 150705450 150705451 AT - CTSS 3'UTR 0.19 TCGA-A4-A7UZ-01 1 162372577 162372577 G A SH2D1B Silent p.V50V 0.22 TCGA-A4-A7UZ-01 1 176811634 176811634 G A PAPPA2 3'UTR 0.20 TCGA-A4-A7UZ-01 1 196952181 196952181 A G CFHR5 Silent p.E75E 0.25 TCGA-A4-A7UZ-01 1 204433195 204433198 CATT - PIK3C2B Frame_Shift_Del p.N418Wfs*8 0.20 TCGA-A4-A7UZ-01 1 2434215 2434215 C T PLCH2 Missense_Mutation p.P1082L 0.33 tolerated_low_confidence(0.55) benign(0) TCGA-A4-A7UZ-01 20 2779177 2779177 G T CPXM1 Missense_Mutation p.P116H 0.16 deleterious(0) probably_damaging(0.998) TCGA-A4-A7UZ-01 20 60988918 60988918 C G RBBP8NL Missense_Mutation p.G497R 0.44 tolerated(0.13) benign(0.02) TCGA-A4-A7UZ-01 20 61513486 61513486 T A DIDO1 Missense_Mutation p.K1274N 0.47 probably_damaging(0.994) TCGA-A4-A7UZ-01 21 45959678 45959678 G C KRTAP10-1 Missense_Mutation p.S119C 0.06 tolerated(0.07) unknown(0) TCGA-A4-A7UZ-01 22 41368480 41368480 G A RBX1 Silent p.K105K 0.27 TCGA-A4-A7UZ-01 2 110374491 110374492 - T SOWAHC 3'UTR 0.17 TCGA-A4-A7UZ-01 2 130900335 130900335 G A CCDC74B Intron 0.20 TCGA-A4-A7UZ-01 2 131803640 131803640 C A ARHGEF4 Missense_Mutation p.Q651K 0.27 deleterious(0.01) benign(0.271) TCGA-A4-A7UZ-01 2 203156090 203156091 CA - NOP58 Intron 0.38 TCGA-A4-A7UZ-01 2 227661691 227661691 T A IRS1 Missense_Mutation p.E588D 0.28 tolerated(1) benign(0.034) TCGA-A4-A7UZ-01 3 186505347 186505348 - A EIF4A2 Frame_Shift_Ins p.R325Qfs*7 0.14 TCGA-A4-A7UZ-01 3 37092015 37092015 G T MLH1 Missense_Mutation p.W714C 0.25 deleterious(0) possibly_damaging(0.727) TCGA-A4-A7UZ-01 3 40433654 40433654 G T ENTPD3 Intron 0.26 TCGA-A4-A7UZ-01 3 52397032 52397032 A G DNAH1 Missense_Mutation p.M1706V 0.33 possibly_damaging(0.893) TCGA-A4-A7UZ-01 4 104064497 104064497 C G CENPE Missense_Mutation p.D1738H 0.21 possibly_damaging(0.687) TCGA-A4-A7UZ-01 4 186427722 186427722 C A PDLIM3 Missense_Mutation p.Q249H 0.08 deleterious(0.02) benign(0.167) TCGA-A4-A7UZ-01 4 39408520 39408520 C T KLB 5'UTR 0.28 TCGA-A4-A7UZ-01 5 115350221 115350221 A C AQPEP Missense_Mutation p.N816T 0.31 tolerated(0.13) benign(0.044) TCGA-A4-A7UZ-01 5 137503621 137503625 ACCTG - BRD8 Splice_Site p.X262_splice 0.12 TCGA-A4-A7UZ-01 5 157230728 157230728 C T CLINT1 Splice_Site p.X315_splice 0.22 TCGA-A4-A7UZ-01 5 96315035 96315035 G A LNPEP Silent p.E71E 0.27 TCGA-A4-A7UZ-01 6 11714462 11714462 G A ADTRP 3'Flank 0.31 TCGA-A4-A7UZ-01 6 29141971 29141971 C T OR2J2 Missense_Mutation p.R187C 0.14 deleterious(0) possibly_damaging(0.764) TCGA-A4-A7UZ-01 6 42224839 42224839 G A TRERF1 Missense_Mutation p.R780C 0.11 deleterious(0.03) possibly_damaging(0.689) TCGA-A4-A7UZ-01 6 44151648 44151648 G A CAPN11 Silent p.L733L 0.31 TCGA-A4-A7UZ-01 6 49754913 49754913 A T PGK2 5'UTR 0.25 TCGA-A4-A7UZ-01 6 87994224 87994224 A G GJB7 Missense_Mutation p.I136T 0.28 tolerated(0.11) benign(0.016) TCGA-A4-A7UZ-01 7 100692139 100692139 T C MUC17 Silent p.T4183T 0.06 TCGA-A4-A7UZ-01 7 105752601 105752601 G A SYPL1 Silent p.I36I 0.54 TCGA-A4-A7UZ-01 7 12728539 12728539 A T ARL4A 3'UTR 0.14 TCGA-A4-A7UZ-01 7 30702464 30702464 C T CRHR2 Splice_Site p.X209_splice 0.20 TCGA-A4-A7UZ-01 7 44122031 44122032 - GAGC POLM Frame_Shift_Ins p.P3Afs*13 0.25 TCGA-A4-A7UZ-01 7 45124446 45124446 C T NACAD Missense_Mutation p.V445M 0.05 tolerated(0.11) benign(0) TCGA-A4-A7UZ-01 7 64639786 64639786 C T INTS4L1 RNA 0.05 TCGA-A4-A7UZ-01 8 39468142 39468142 G C ADAM18 Missense_Mutation p.D147H 0.23 tolerated(0.1) benign(0.004) TCGA-A4-A7UZ-01 9 104187772 104187773 - A ALDOB Frame_Shift_Ins p.T255Nfs*23 0.20 TCGA-A4-A7UZ-01 9 125612089 125612089 T G RC3H2 Missense_Mutation p.K1131N 0.30 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-A4-A7UZ-01 9 132481530 132481530 C T PRRX2 Missense_Mutation p.R94C 0.08 tolerated(0.06) benign(0.009) TCGA-A4-A7UZ-01 9 135668059 135668059 C T AK8 Silent p.Q361Q 0.26 TCGA-A4-A7UZ-01 9 21385222 21385222 C T IFNA2 Missense_Mutation p.R36K 0.13 tolerated(0.34) benign(0.114) TCGA-A4-A7UZ-01 9 79121648 79121648 G A GCNT1 3'UTR 0.19 TCGA-A4-A7UZ-01 X 129058817 129058817 G A UTP14A Silent p.Q465Q 0.52 TCGA-A4-A7UZ-01 X 134715638 134715638 A C DDX26B 3'UTR 0.49 TCGA-A4-A7UZ-01 X 21674429 21674429 A G KLHL34 Missense_Mutation p.L493P 0.34 tolerated(0.21) probably_damaging(0.968) TCGA-A4-A7UZ-01 X 24024135 24024157 AGCAAAACCGGATATTCTGAATG C KLHL15 Frame_Shift_Del p.I218Mfs*2 0.23 TCGA-A4-A7UZ-01 X 69420179 69420179 T C DGAT2L6 Silent p.F114F 0.48 TCGA-AL-3466-01 10 1043230 1043230 G A GTPBP4 Silent p.K181K 0.45 TCGA-AL-3466-01 11 114465481 114465481 T G NXPE4 Translation_Start_Site p.M1? 0.17 tolerated_low_confidence(0.08) possibly_damaging(0.661) TCGA-AL-3466-01 11 17190402 17190402 G A PIK3C2A Missense_Mutation p.S296L 0.20 tolerated_low_confidence(0.35) benign(0.001) TCGA-AL-3466-01 11 60268545 60268545 C T MS4A12 Missense_Mutation p.H102Y 0.16 deleterious(0) probably_damaging(0.991) TCGA-AL-3466-01 11 61026692 61026692 C A VWCE Nonsense_Mutation p.E775* 0.20 TCGA-AL-3466-01 12 9096395 9096395 A G M6PR Splice_Site p.X151_splice 0.17 TCGA-AL-3466-01 14 106967163 106967163 G A IGHV1-46 Silent p.Y79Y 0.63 TCGA-AL-3466-01 14 38311414 38311414 G A TTC6 Missense_Mutation p.R1860H 0.64 deleterious(0.04) possibly_damaging(0.907) TCGA-AL-3466-01 15 37184626 37184626 C A MEIS2 Missense_Mutation p.Q394H 0.25 tolerated_low_confidence(0.44) benign(0.002) TCGA-AL-3466-01 16 84940197 84940197 G A CRISPLD2 Silent p.L481L 0.22 TCGA-AL-3466-01 17 43213380 43213380 A G ACBD4 Intron 0.26 TCGA-AL-3466-01 17 47588006 47588006 G T NGFR Silent p.V267V 0.16 TCGA-AL-3466-01 17 49710848 49710848 A C CA10 Missense_Mutation p.L318R 0.14 deleterious(0.03) possibly_damaging(0.691) TCGA-AL-3466-01 17 76134728 76134757 GCCCTTGGGCTCCCGCCCATTGGCCAGCGT - TMC8 In_Frame_Del p.G582_L591del 0.18 TCGA-AL-3466-01 18 43514887 43514888 - A EPG5 Frame_Shift_Ins p.S716Vfs*46 0.23 TCGA-AL-3466-01 19 23926850 23926850 G A ZNF681 Missense_Mutation p.T501I 0.25 deleterious(0.04) possibly_damaging(0.906) TCGA-AL-3466-01 19 41198098 41198098 C T ADCK4 Missense_Mutation p.A493T 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-AL-3466-01 19 49657602 49657602 C T HRC Missense_Mutation p.R298Q 0.52 tolerated(0.78) benign(0.006) TCGA-AL-3466-01 1 100572938 100572938 C G SASS6 Missense_Mutation p.E440Q 0.14 deleterious(0.01) benign(0.292) TCGA-AL-3466-01 1 152127802 152127802 T C RPTN Missense_Mutation p.I591M 0.28 tolerated(0.32) benign(0.008) TCGA-AL-3466-01 1 184767228 184767228 C A FAM129A Missense_Mutation p.D551Y 0.09 deleterious(0.01) probably_damaging(0.944) TCGA-AL-3466-01 1 186327733 186327735 GAT - TPR In_Frame_Del p.S480del 0.12 TCGA-AL-3466-01 1 214557259 214557259 T C PTPN14 Missense_Mutation p.N647D 0.32 deleterious(0.04) benign(0.016) TCGA-AL-3466-01 1 220971317 220971317 G A MARC1 Silent p.R238R 0.24 TCGA-AL-3466-01 1 234458910 234458910 A T SLC35F3 Missense_Mutation p.E465V 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-AL-3466-01 1 6285068 6285068 G C ICMT 3'UTR 0.03 TCGA-AL-3466-01 20 49626897 49626897 C T KCNG1 5'UTR 0.16 TCGA-AL-3466-01 2 178416990 178416990 C T TTC30B Missense_Mutation p.G168R 0.13 deleterious(0.02) possibly_damaging(0.883) TCGA-AL-3466-01 2 179415765 179415765 G A TTN Missense_Mutation p.A30498V 0.09 TCGA-AL-3466-01 2 225266233 225266233 C T FAM124B Missense_Mutation p.V85I 0.14 tolerated(0.14) benign(0.016) TCGA-AL-3466-01 2 62374018 62374018 C T AC018462.2 5'Flank 0.12 TCGA-AL-3466-01 2 73315269 73315269 C T RAB11FIP5 Missense_Mutation p.A493T 0.13 tolerated(0.1) possibly_damaging(0.709) TCGA-AL-3466-01 3 151072983 151072983 C T MED12L Missense_Mutation p.L790F 0.27 tolerated(1) benign(0.092) TCGA-AL-3466-01 3 48577177 48577177 C A PFKFB4 Nonsense_Mutation p.E136* 0.40 TCGA-AL-3466-01 3 53264627 53264627 C T TKT Missense_Mutation p.R326H 0.06 deleterious(0) probably_damaging(0.989) TCGA-AL-3466-01 3 73110176 73110176 T A PPP4R2 Missense_Mutation p.N128K 0.20 deleterious(0) possibly_damaging(0.825) TCGA-AL-3466-01 5 156482352 156482362 AATAGCTTATA - HAVCR1 Frame_Shift_Del p.Y77Gfs*19 0.29 TCGA-AL-3466-01 6 160183235 160183235 G C ACAT2 Intron 0.19 TCGA-AL-3466-01 6 27775403 27775403 C T HIST1H2BL Silent p.E94E 0.73 TCGA-AL-3466-01 6 53989447 53989447 T C MLIP Silent p.I132I 0.77 TCGA-AL-3466-01 7 150698913 150698913 G A NOS3 Missense_Mutation p.V503M 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-AL-3466-01 8 107752622 107752622 T A OXR1 Missense_Mutation p.Y740N 0.13 deleterious(0) probably_damaging(0.997) TCGA-AL-3466-01 9 117139726 117139726 T C AKNA Missense_Mutation p.T121A 0.52 tolerated(0.11) benign(0.037) TCGA-AL-3466-01 9 121930244 121930244 C T BRINP1 Silent p.S468S 0.23 TCGA-AL-3466-01 X 71681922 71681922 G C HDAC8 Missense_Mutation p.R313G 0.32 deleterious(0) probably_damaging(1) TCGA-AL-3467-01 11 124180427 124180427 G A OR8D1 Missense_Mutation p.P79L 0.10 deleterious(0) probably_damaging(0.999) TCGA-AL-3467-01 11 45948105 45948105 A C GYLTL1B Missense_Mutation p.E374A 0.33 deleterious(0.04) benign(0.022) TCGA-AL-3467-01 12 9754098 9754098 T C KLRB1 Silent p.S61S 0.06 TCGA-AL-3467-01 14 24544466 24544466 C A CPNE6 Missense_Mutation p.T253K 0.44 tolerated(0.76) benign(0.029) TCGA-AL-3467-01 14 34263109 34263109 A G NPAS3 Missense_Mutation p.N387S 0.07 tolerated(0.08) possibly_damaging(0.587) TCGA-AL-3467-01 15 57922023 57922023 C G GCOM1 Missense_Mutation p.Q217E 0.04 deleterious(0.03) possibly_damaging(0.452) TCGA-AL-3467-01 16 61891030 61891030 A C CDH8 Silent p.P220P 0.31 TCGA-AL-3467-01 16 61891031 61891031 G T CDH8 Missense_Mutation p.P220H 0.32 deleterious(0) probably_damaging(0.935) TCGA-AL-3467-01 16 70805949 70805949 C A VAC14 Intron 0.12 TCGA-AL-3467-01 17 4645266 4645266 G - ZMYND15 Frame_Shift_Del p.T296Hfs*30 0.33 TCGA-AL-3467-01 17 59560359 59560359 G A TBX4 Missense_Mutation p.D374N 0.05 deleterious(0.02) benign(0.443) TCGA-AL-3467-01 1 147381387 147381387 T G GJA8 3'UTR 0.10 TCGA-AL-3467-01 1 171553162 171553162 C T PRRC2C Missense_Mutation p.H2491Y 0.34 probably_damaging(0.986) TCGA-AL-3467-01 22 45929662 45929662 G A FBLN1 Missense_Mutation p.G223D 0.07 tolerated(0.07) probably_damaging(0.989) TCGA-AL-3467-01 22 46785299 46785299 A G CELSR1 Missense_Mutation p.L2148P 0.05 deleterious(0.02) benign(0.071) TCGA-AL-3467-01 2 53897567 53897568 - G ASB3 3'UTR 0.39 TCGA-AL-3467-01 5 126860252 126860252 G T PRRC1 Missense_Mutation p.V45L 0.07 tolerated_low_confidence(0.1) benign(0.046) TCGA-AL-3467-01 6 111208734 111208734 A G AMD1 Missense_Mutation p.D46G 0.16 tolerated(0.53) benign(0.067) TCGA-AL-3467-01 6 31543456 31543456 C A TNF 5'UTR 0.34 TCGA-AL-3467-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-AL-3467-01 7 17836512 17836512 T C SNX13 Missense_Mutation p.D855G 0.09 deleterious(0) possibly_damaging(0.682) TCGA-AL-3467-01 X 114541171 114541171 T A LUZP4 Silent p.T248T 0.03 TCGA-AL-3467-01 X 3028196 3028196 C T ARSF Silent p.P431P 0.03 TCGA-AL-3468-01 10 111860425 111860425 C T ADD3 Missense_Mutation p.A5V 0.05 tolerated(0.06) benign(0.017) TCGA-AL-3468-01 10 135009191 135009191 G A KNDC1 Missense_Mutation p.V534I 0.40 tolerated(0.23) probably_damaging(0.939) TCGA-AL-3468-01 10 135440205 135440205 G A FRG2B Silent p.S14S 0.21 TCGA-AL-3468-01 10 77159027 77159027 G T ZNF503 Missense_Mutation p.P474Q 0.68 tolerated(0.07) possibly_damaging(0.896) TCGA-AL-3468-01 11 134147793 134147793 A C GLB1L3 Missense_Mutation p.N117H 0.45 deleterious(0) probably_damaging(1) TCGA-AL-3468-01 11 597418 597418 G T PHRF1 Nonsense_Mutation p.E248* 0.22 TCGA-AL-3468-01 11 62567921 62567921 A GG NXF1 Frame_Shift_Ins p.L315Pfs*15 0.25 TCGA-AL-3468-01 11 66082566 66082566 T - CD248 Frame_Shift_Del p.I645Sfs*160 0.39 TCGA-AL-3468-01 11 7817940 7817940 A T OR5P2 Missense_Mutation p.S184T 0.39 deleterious(0.01) possibly_damaging(0.831) TCGA-AL-3468-01 12 109182194 109182194 T A SSH1 Missense_Mutation p.H907L 0.69 tolerated_low_confidence(0.1) benign(0.04) TCGA-AL-3468-01 12 121735350 121735350 A T CAMKK2 5'UTR 0.52 TCGA-AL-3468-01 12 27156249 27156249 G T TM7SF3 Missense_Mutation p.H56N 0.34 tolerated(0.06) benign(0.015) TCGA-AL-3468-01 12 50524260 50524261 - GCCAA CERS5 3'UTR 0.25 TCGA-AL-3468-01 12 56822670 56822670 C T TIMELESS Missense_Mutation p.R434H 0.28 deleterious(0.02) benign(0.194) TCGA-AL-3468-01 12 6494285 6494285 C T LTBR Silent p.I97I 0.58 TCGA-AL-3468-01 12 66765685 66765685 G A GRIP1 Missense_Mutation p.T882M 0.27 deleterious(0.03) benign(0.091) TCGA-AL-3468-01 13 52548120 52548120 T - ATP7B Frame_Shift_Del p.E412Dfs*6 0.33 TCGA-AL-3468-01 14 103807312 103807312 A - EIF5 Frame_Shift_Del p.K407Rfs*11 0.34 TCGA-AL-3468-01 14 22217853 22217853 G A TRAV5 Silent p.T68T 0.50 TCGA-AL-3468-01 14 58949256 58949256 C T KIAA0586 Silent p.L1043L 0.45 TCGA-AL-3468-01 14 69256762 69256762 A G ZFP36L1 Missense_Mutation p.Y169H 0.34 deleterious(0) probably_damaging(1) TCGA-AL-3468-01 14 92491671 92491671 G C TRIP11 Missense_Mutation p.Q99E 0.51 tolerated(0.22) benign(0.023) TCGA-AL-3468-01 15 63882867 63882867 T G USP3 Missense_Mutation p.S469A 0.38 tolerated(0.15) benign(0.136) TCGA-AL-3468-01 15 66021476 66021476 T G DENND4A Missense_Mutation p.Y474S 0.25 deleterious(0) probably_damaging(0.999) TCGA-AL-3468-01 15 91161146 91161146 G C CRTC3 Missense_Mutation p.E215D 0.44 deleterious(0.05) possibly_damaging(0.809) TCGA-AL-3468-01 15 96875754 96875755 - T NR2F2 Frame_Shift_Ins p.K141* 0.28 TCGA-AL-3468-01 16 1263882 1263882 T C CACNA1H Missense_Mutation p.I1627T 0.62 deleterious(0) probably_damaging(0.989) TCGA-AL-3468-01 16 30736125 30736125 C G SRCAP Missense_Mutation p.P1794A 0.35 probably_damaging(0.956) TCGA-AL-3468-01 16 57494525 57494525 C T COQ9 Nonsense_Mutation p.Q316* 0.19 TCGA-AL-3468-01 17 27067537 27067537 C G NEK8 Missense_Mutation p.P492A 0.27 tolerated(0.16) benign(0.132) TCGA-AL-3468-01 17 37331566 37331566 C T CACNB1 Silent p.L559L 0.31 TCGA-AL-3468-01 17 38447499 38447499 C T CDC6 Missense_Mutation p.S123L 0.57 tolerated(0.31) benign(0.004) TCGA-AL-3468-01 17 62500099 62500102 ACAG - DDX5 Splice_Site p.X147_splice 0.33 TCGA-AL-3468-01 17 68171425 68171425 G A KCNJ2 Missense_Mutation p.R82Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-AL-3468-01 17 72736931 72736931 G A RAB37 Missense_Mutation p.V45I 0.06 deleterious(0.02) possibly_damaging(0.503) TCGA-AL-3468-01 17 73945931 73945931 C T ACOX1 Missense_Mutation p.C449Y 0.54 tolerated(1) benign(0) TCGA-AL-3468-01 18 29867890 29867890 G A GAREM Missense_Mutation p.P224S 0.38 deleterious(0) probably_damaging(0.999) TCGA-AL-3468-01 18 61621714 61621714 A G HMSD Missense_Mutation p.I49V 0.09 tolerated(1) benign(0.011) TCGA-AL-3468-01 19 10096525 10096525 C T COL5A3 Missense_Mutation p.G800E 0.54 unknown(0) TCGA-AL-3468-01 19 11141551 11141551 C G SMARCA4 Missense_Mutation p.S1176R 0.53 probably_damaging(0.995) TCGA-AL-3468-01 19 39915323 39915323 C T PLEKHG2 Missense_Mutation p.P1184S 0.41 tolerated_low_confidence(0.14) benign(0.001) TCGA-AL-3468-01 19 42872696 42872696 T C MEGF8 Silent p.C2054C 0.44 TCGA-AL-3468-01 19 50832052 50832052 G A KCNC3 Silent p.G96G 0.40 TCGA-AL-3468-01 19 54963393 54963393 T G LENG8 Silent p.A54A 0.42 TCGA-AL-3468-01 19 55603617 55603617 G C PPP1R12C Silent p.L711L 0.25 TCGA-AL-3468-01 19 56544099 56544099 C T NLRP5 Missense_Mutation p.T800I 0.38 tolerated(0.29) benign(0.015) TCGA-AL-3468-01 19 57931956 57931959 TTCT - ZNF17 Frame_Shift_Del p.F366Lfs*91 0.14 TCGA-AL-3468-01 1 114964258 114964258 G T TRIM33 Missense_Mutation p.H621N 0.42 tolerated(0.08) benign(0.016) TCGA-AL-3468-01 1 155032387 155032387 A T ADAM15 Missense_Mutation p.S669C 0.39 deleterious(0) probably_damaging(0.971) TCGA-AL-3468-01 1 155408153 155408153 T A ASH1L Silent p.P1931P 0.35 TCGA-AL-3468-01 1 156693972 156693972 G A ISG20L2 Missense_Mutation p.L306F 0.09 deleterious(0) probably_damaging(0.931) TCGA-AL-3468-01 1 159898194 159898194 G T IGSF9 Missense_Mutation p.P995H 0.50 deleterious(0) benign(0.396) TCGA-AL-3468-01 1 160771585 160771585 T - LY9 Intron 0.40 TCGA-AL-3468-01 1 21276537 21276537 G A EIF4G3 Missense_Mutation p.A211V 0.16 deleterious_low_confidence(0.04) probably_damaging(0.995) TCGA-AL-3468-01 1 21276538 21276538 C A EIF4G3 Missense_Mutation p.A211S 0.19 tolerated_low_confidence(0.22) probably_damaging(0.995) TCGA-AL-3468-01 1 214178606 214178606 C T PROX1 Silent p.S608S 0.33 TCGA-AL-3468-01 1 220232228 220232229 - GCATA BPNT1 Frame_Shift_Ins p.S296Mfs*30 0.40 TCGA-AL-3468-01 20 17207956 17207957 - GGT PCSK2 In_Frame_Ins p.G4dup 0.66 TCGA-AL-3468-01 20 3128940 3128940 A G FASTKD5 Silent p.P259P 0.29 TCGA-AL-3468-01 20 33104253 33104253 A G DYNLRB1 5'UTR 0.05 TCGA-AL-3468-01 20 39831715 39831715 G T ZHX3 Silent p.T614T 0.61 TCGA-AL-3468-01 21 41710196 41710196 T C DSCAM Missense_Mutation p.K539E 0.77 deleterious(0) probably_damaging(0.976) TCGA-AL-3468-01 22 21330826 21330826 G C AIFM3 Silent p.L343L 0.45 TCGA-AL-3468-01 22 23237695 23237695 C T IGLL5 Missense_Mutation p.P156S 0.33 tolerated_low_confidence(0.66) benign(0.018) TCGA-AL-3468-01 22 31837941 31837941 T C EIF4ENIF1 Silent p.R790R 0.10 TCGA-AL-3468-01 22 42998037 42998037 G - POLDIP3 Frame_Shift_Del p.P159Hfs*9 0.34 TCGA-AL-3468-01 22 46931045 46931045 T C CELSR1 Missense_Mutation p.I675V 0.30 tolerated(0.45) benign(0.173) TCGA-AL-3468-01 22 50941823 50941823 C T LMF2 Silent p.K707K 0.11 TCGA-AL-3468-01 2 107049613 107049613 A G RGPD3 Silent p.H778H 0.30 TCGA-AL-3468-01 2 116598392 116598392 C A DPP10 Missense_Mutation p.T754N 0.45 deleterious(0) benign(0.295) TCGA-AL-3468-01 2 130932501 130932501 C T SMPD4 Missense_Mutation p.D77N 0.07 tolerated(0.11) possibly_damaging(0.908) TCGA-AL-3468-01 2 160982928 160982928 T C ITGB6 Silent p.E615E 0.10 TCGA-AL-3468-01 2 198358118 198358118 G T HSPD1 Missense_Mutation p.H267N 0.43 tolerated(0.42) benign(0.016) TCGA-AL-3468-01 2 211081149 211081149 T C ACADL Missense_Mutation p.Q153R 0.28 deleterious(0) probably_damaging(0.996) TCGA-AL-3468-01 2 215593624 215593624 T G BARD1 Missense_Mutation p.S704R 0.60 tolerated(0.09) benign(0.011) TCGA-AL-3468-01 2 242437690 242437690 C A STK25 Missense_Mutation p.S331I 0.04 tolerated(0.07) benign(0.001) TCGA-AL-3468-01 2 46372319 46372319 T C PRKCE Silent p.N560N 0.43 TCGA-AL-3468-01 2 74589259 74589259 G C DCTN1 Missense_Mutation p.L1207V 0.50 tolerated(0.6) benign(0.013) TCGA-AL-3468-01 3 14508150 14508150 G A SLC6A6 Missense_Mutation p.D287N 0.59 deleterious(0.04) possibly_damaging(0.458) TCGA-AL-3468-01 3 155860950 155860951 - C KCNAB1 Intron 0.29 TCGA-AL-3468-01 3 170732492 170732492 A G SLC2A2 Missense_Mutation p.L46S 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-AL-3468-01 3 178960597 178960597 C G KCNMB3 3'UTR 0.63 TCGA-AL-3468-01 3 183861938 183861938 G A EIF2B5 Missense_Mutation p.D641N 0.26 tolerated(0.06) probably_damaging(0.982) TCGA-AL-3468-01 3 5024904 5024904 A T BHLHE40 Missense_Mutation p.S256C 0.65 tolerated(0.1) benign(0.003) TCGA-AL-3468-01 3 52441417 52441417 G C BAP1 Silent p.A145A 0.30 TCGA-AL-3468-01 3 73432828 73432828 C T PDZRN3 Silent p.A963A 0.27 TCGA-AL-3468-01 5 147505159 147505159 G T SPINK5 Missense_Mutation p.V938F 0.49 tolerated(0.57) benign(0.071) TCGA-AL-3468-01 5 149580661 149580661 T C SLC6A7 Missense_Mutation p.F245L 0.46 deleterious(0.03) probably_damaging(0.966) TCGA-AL-3468-01 5 167836950 167836950 G A WWC1 Silent p.Q297Q 0.48 TCGA-AL-3468-01 5 176733459 176733459 A C PRELID1 Missense_Mutation p.K183T 0.31 tolerated(0.11) probably_damaging(0.991) TCGA-AL-3468-01 5 66479676 66479676 T C CD180 Missense_Mutation p.H332R 0.43 tolerated(0.56) benign(0.001) TCGA-AL-3468-01 6 29080474 29080475 TT - OR2J3 Frame_Shift_Del p.Q271Rfs*16 0.84 TCGA-AL-3468-01 6 31712029 31712029 A G MSH5 Silent p.E200E 0.31 TCGA-AL-3468-01 6 4998958 4998958 T C RPP40 Missense_Mutation p.H184R 0.94 deleterious(0.01) benign(0.328) TCGA-AL-3468-01 6 53787458 53787458 C A LRRC1 Missense_Mutation p.P481Q 0.88 deleterious(0) probably_damaging(0.999) TCGA-AL-3468-01 7 100463708 100463708 T C SLC12A9 Silent p.D742D 0.46 TCGA-AL-3468-01 7 12728407 12728407 G C ARL4A Missense_Mutation p.K176N 0.43 tolerated(0.57) benign(0.187) TCGA-AL-3468-01 7 142378936 142378936 C A MTRNR2L6 3'Flank 0.40 TCGA-AL-3468-01 7 4153049 4153049 C G SDK1 Missense_Mutation p.T1188S 0.06 deleterious(0.05) possibly_damaging(0.739) TCGA-AL-3468-01 7 44259810 44259810 C T CAMK2B Missense_Mutation p.A618T 0.09 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-AL-3468-01 7 55459595 55459595 G C LANCL2 Missense_Mutation p.G105A 0.17 deleterious(0.01) probably_damaging(1) TCGA-AL-3468-01 7 87148688 87148688 C T ABCB1 Missense_Mutation p.A961T 0.37 deleterious(0.04) benign(0.285) TCGA-AL-3468-01 7 99950090 99950090 G A PILRB 5'UTR 0.57 TCGA-AL-3468-01 8 10396268 10396268 C A PRSS55 Missense_Mutation p.L342M 0.38 deleterious(0.01) probably_damaging(0.98) TCGA-AL-3468-01 8 22058818 22058818 C T BMP1 Intron 0.50 TCGA-AL-3468-01 8 94792858 94792858 A C TMEM67 Missense_Mutation p.N251T 0.47 deleterious(0) probably_damaging(0.999) TCGA-AL-3468-01 8 99441466 99441466 A - KCNS2 Frame_Shift_Del p.K421Sfs*16 0.35 TCGA-AL-3468-01 9 113234604 113234615 CTGGATAGTCGG - SVEP1 Splice_Site p.X867_splice 0.52 TCGA-AL-3468-01 9 137714852 137714852 T C COL5A1 Silent p.P1539P 0.22 TCGA-AL-3468-01 9 40774146 40774146 C A ZNF658 Nonsense_Mutation p.E377* 0.41 TCGA-AL-3468-01 9 84609703 84609703 A - SPATA31D1 Frame_Shift_Del p.A1441Lfs*28 0.35 TCGA-AL-3468-01 X 57021007 57021007 G C SPIN3 Missense_Mutation p.A125G 0.04 deleterious(0.03) benign(0.089) TCGA-AL-3468-01 X 77387232 77387232 G T TAF9B Missense_Mutation p.P211T 0.31 deleterious(0.04) benign(0.391) TCGA-AL-3472-01 11 123900948 123900948 T G OR10G8 Missense_Mutation p.S207A 0.39 tolerated(0.39) benign(0.02) TCGA-AL-3472-01 11 130066334 130066334 A G ST14 Missense_Mutation p.N405S 0.20 tolerated(0.06) benign(0.344) TCGA-AL-3472-01 11 19955397 19955397 C T NAV2 Missense_Mutation p.S559F 0.42 deleterious(0) probably_damaging(0.997) TCGA-AL-3472-01 12 112229114 112229114 G A ALDH2 Missense_Mutation p.G229D 0.07 deleterious(0) probably_damaging(0.998) TCGA-AL-3472-01 12 114397941 114397941 C T RBM19 Missense_Mutation p.A88T 0.38 tolerated(0.08) possibly_damaging(0.53) TCGA-AL-3472-01 12 132393457 132393457 G A ULK1 Missense_Mutation p.A169T 0.41 deleterious(0) probably_damaging(0.999) TCGA-AL-3472-01 12 29670368 29670368 A G TMTC1 Silent p.L721L 0.43 TCGA-AL-3472-01 12 4554499 4554499 C A FGF6 Missense_Mutation p.V80L 0.47 tolerated(1) benign(0.007) TCGA-AL-3472-01 12 4554500 4554500 C G FGF6 Missense_Mutation p.L79F 0.47 deleterious(0.02) probably_damaging(0.994) TCGA-AL-3472-01 12 58114751 58114751 C A OS9 3'UTR 0.42 TCGA-AL-3472-01 12 6886462 6886462 C A LAG3 Missense_Mutation p.L364M 0.43 tolerated(0.17) possibly_damaging(0.541) TCGA-AL-3472-01 14 103430982 103430982 C T CDC42BPB Silent p.P861P 0.08 TCGA-AL-3472-01 14 75528414 75528414 G C ACYP1 Intron 0.34 TCGA-AL-3472-01 15 101592098 101592098 C A LRRK1 Missense_Mutation p.H1208N 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-AL-3472-01 16 11066855 11066855 A C CLEC16A Missense_Mutation p.N222T 0.40 deleterious(0.04) possibly_damaging(0.495) TCGA-AL-3472-01 16 2814808 2814809 - T SRRM2 Frame_Shift_Ins p.M1427Ifs*22 0.32 TCGA-AL-3472-01 16 49670867 49670867 C G ZNF423 Missense_Mutation p.K732N 0.51 deleterious(0) probably_damaging(1) TCGA-AL-3472-01 16 85100829 85100829 C T KIAA0513 Missense_Mutation p.A51V 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-AL-3472-01 17 10258306 10258306 C G MYH13 Silent p.L269L 0.18 TCGA-AL-3472-01 17 17080727 17080727 G A MPRIP Splice_Site p.X987_splice 0.27 TCGA-AL-3472-01 19 1391140 1391140 C T NDUFS7 Missense_Mutation p.P144L 0.42 tolerated_low_confidence(0.06) probably_damaging(1) TCGA-AL-3472-01 19 38876904 38876904 G T GGN Missense_Mutation p.A333D 0.38 deleterious_low_confidence(0) unknown(0) TCGA-AL-3472-01 19 46268691 46268691 C - SIX5 3'UTR 0.47 TCGA-AL-3472-01 19 49538974 49538974 G A CGB1 Missense_Mutation p.P121S 0.26 tolerated(0.1) probably_damaging(0.93) TCGA-AL-3472-01 19 50102854 50102854 C T PRR12 Missense_Mutation p.P1335L 0.36 possibly_damaging(0.851) TCGA-AL-3472-01 19 56459468 56459468 G A NLRP8 Missense_Mutation p.G67D 0.46 tolerated(0.13) benign(0.394) TCGA-AL-3472-01 19 56934490 56934490 A T ZNF583 Missense_Mutation p.N155Y 0.46 tolerated(0.06) benign(0.001) TCGA-AL-3472-01 19 9063328 9063328 T C MUC16 Missense_Mutation p.T8040A 0.51 unknown(0) TCGA-AL-3472-01 1 153924730 153924730 G A CRTC2 Missense_Mutation p.P254L 0.41 tolerated(0.05) benign(0.147) TCGA-AL-3472-01 1 156593855 156593855 C T HAPLN2 Silent p.V114V 0.58 TCGA-AL-3472-01 1 216073458 216073458 C T USH2A Missense_Mutation p.S2518N 0.50 benign(0.033) TCGA-AL-3472-01 1 37307384 37307384 C T GRIK3 Missense_Mutation p.D495N 0.49 tolerated(0.79) benign(0.004) TCGA-AL-3472-01 20 44534919 44534919 G A PLTP Silent p.D231D 0.41 TCGA-AL-3472-01 20 44670175 44670175 C T SLC12A5 Silent p.I377I 0.43 TCGA-AL-3472-01 20 56140816 56140817 GA - PCK1 Frame_Shift_Del p.E611Dfs*16 0.31 TCGA-AL-3472-01 21 45743723 45743723 C T PFKL Silent p.I524I 0.41 TCGA-AL-3472-01 22 31523948 31523948 G C INPP5J Missense_Mutation p.W232S 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-AL-3472-01 22 42191444 42191444 C A MEI1 Silent p.L1188L 0.39 TCGA-AL-3472-01 2 172647961 172647961 C G SLC25A12 Missense_Mutation p.G529R 0.40 deleterious(0.04) probably_damaging(0.997) TCGA-AL-3472-01 2 198260814 198260814 C T SF3B1 Missense_Mutation p.V1169I 0.44 tolerated(0.32) benign(0.211) TCGA-AL-3472-01 2 239176835 239176850 GGACACTGCGGAGAAG - PER2 Splice_Site p.X275_splice 0.42 TCGA-AL-3472-01 2 8871568 8871568 T - KIDINS220 Frame_Shift_Del p.N1533Tfs*17 0.32 TCGA-AL-3472-01 2 99689479 99689479 A C TSGA10 Splice_Site p.X313_splice 0.50 TCGA-AL-3472-01 3 52830615 52830615 C T ITIH3 Missense_Mutation p.S78F 0.34 tolerated(0.21) benign(0.008) TCGA-AL-3472-01 3 88190087 88190087 A T ZNF654 Nonsense_Mutation p.R543* 0.29 TCGA-AL-3472-01 4 128564929 128564929 A G INTU Missense_Mutation p.N134D 0.44 tolerated(0.46) benign(0.003) TCGA-AL-3472-01 4 40810405 40810405 G C NSUN7 Missense_Mutation p.G536R 0.41 tolerated(0.1) possibly_damaging(0.563) TCGA-AL-3472-01 4 4276342 4276342 C T LYAR Missense_Mutation p.R195Q 0.45 tolerated(0.05) probably_damaging(0.999) TCGA-AL-3472-01 5 139193773 139193773 T C PSD2 Silent p.D280D 0.45 TCGA-AL-3472-01 5 140683030 140683030 G A SLC25A2 Nonsense_Mutation p.Q135* 0.41 TCGA-AL-3472-01 5 40853728 40853728 G T CARD6 Missense_Mutation p.W765L 0.40 tolerated(0.09) benign(0.037) TCGA-AL-3472-01 6 135732541 135732541 G C AHI1 Missense_Mutation p.T969S 0.83 tolerated(0.09) benign(0.043) TCGA-AL-3472-01 6 30140094 30140094 A - TRIM15 Frame_Shift_Del p.G458Vfs*6 0.46 TCGA-AL-3472-01 6 3410472 3410472 A T SLC22A23 Missense_Mutation p.F288Y 0.98 deleterious(0) probably_damaging(0.999) TCGA-AL-3472-01 6 51712728 51712728 A G PKHD1 Missense_Mutation p.L2651P 0.88 deleterious(0) probably_damaging(0.977) TCGA-AL-3472-01 7 116415115 116415115 T A MET Missense_Mutation p.V1088E 0.59 deleterious(0) probably_damaging(0.993) TCGA-AL-3472-01 7 4876021 4876021 G T RADIL Missense_Mutation p.L251M 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-AL-3472-01 8 142480802 142480802 G A MROH5 3'UTR 0.50 TCGA-AL-3472-01 9 130213582 130213582 G A RPL12 Silent p.F5F 0.42 TCGA-AL-3472-01 9 21334413 21334413 A T KLHL9 Missense_Mutation p.V149D 0.45 deleterious(0) benign(0.221) TCGA-AL-3472-01 9 80942983 80942984 - A PSAT1 Frame_Shift_Ins p.N297Kfs*2 0.38 TCGA-AL-3473-01 10 104184514 104184514 C T CUEDC2 Missense_Mutation p.G37E 0.13 deleterious(0) probably_damaging(0.999) TCGA-AL-3473-01 10 32560793 32560793 A G EPC1 Silent p.H709H 0.10 TCGA-AL-3473-01 10 43691608 43691608 G T RASGEF1A 3'UTR 0.20 TCGA-AL-3473-01 10 63957650 63957650 T G RTKN2 3'UTR 0.17 TCGA-AL-3473-01 11 102206814 102206814 T G BIRC3 Missense_Mutation p.V481G 0.18 tolerated(0.22) benign(0.02) TCGA-AL-3473-01 11 104903803 104903803 A T CASP1 Missense_Mutation p.S109T 0.18 tolerated(0.51) benign(0.031) TCGA-AL-3473-01 11 1104253 1104253 G A MUC2 Missense_Mutation p.G2815E 0.16 unknown(0) TCGA-AL-3473-01 11 122929764 122929764 T C HSPA8 Intron 0.12 TCGA-AL-3473-01 11 124135727 124135727 C T OR8G5 Silent p.A335A 0.23 TCGA-AL-3473-01 11 125280693 125280693 C T PKNOX2 Missense_Mutation p.P246L 0.17 deleterious(0) possibly_damaging(0.892) TCGA-AL-3473-01 11 18159638 18159638 G A MRGPRX3 Missense_Mutation p.D297N 0.06 deleterious(0.01) possibly_damaging(0.753) TCGA-AL-3473-01 11 64802325 64802325 T G SNX15 Missense_Mutation p.F88C 0.12 tolerated(0.05) benign(0.11) TCGA-AL-3473-01 12 102045044 102045044 C G MYBPC1 Missense_Mutation p.Q442E 0.07 deleterious(0.01) benign(0.21) TCGA-AL-3473-01 12 24102509 24102509 C G SOX5 Missense_Mutation p.Q9H 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-AL-3473-01 12 64377805 64377805 T A SRGAP1 Missense_Mutation p.L49Q 0.12 deleterious(0) probably_damaging(0.996) TCGA-AL-3473-01 12 6554287 6554287 T A CD27 Missense_Mutation p.L9Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-AL-3473-01 12 978188 978188 T A WNK1 Intron 0.15 TCGA-AL-3473-01 14 21464718 21464718 G T METTL17 Missense_Mutation p.M371I 0.16 deleterious(0.03) benign(0.038) TCGA-AL-3473-01 14 21464719 21464719 G T METTL17 Missense_Mutation p.V372L 0.16 tolerated(0.43) benign(0.012) TCGA-AL-3473-01 14 52485956 52485956 A C NID2 Missense_Mutation p.Y951D 0.25 tolerated(0.21) benign(0.158) TCGA-AL-3473-01 15 40685795 40685795 G T KNSTRN Missense_Mutation p.M316I 0.18 tolerated(0.1) benign(0.013) TCGA-AL-3473-01 15 55516128 55516128 T A RAB27A Silent p.V142V 0.14 TCGA-AL-3473-01 16 19073098 19073098 A T TMC7 Splice_Site p.X703_splice 0.17 TCGA-AL-3473-01 16 21080893 21080893 C T DNAH3 Missense_Mutation p.R1075H 0.12 tolerated(0.24) possibly_damaging(0.671) TCGA-AL-3473-01 17 40726133 40726133 G T PSMC3IP Nonsense_Mutation p.C107* 0.24 TCGA-AL-3473-01 17 41365849 41365849 C T TMEM106A Silent p.L72L 0.10 TCGA-AL-3473-01 17 47486482 47486483 CT - PHB Frame_Shift_Del p.E144Afs*23 0.12 TCGA-AL-3473-01 17 8079579 8079579 G T TMEM107 Missense_Mutation p.P9H 0.13 deleterious(0) probably_damaging(1) TCGA-AL-3473-01 18 48442562 48442562 C G ME2 Missense_Mutation p.D139E 0.09 tolerated(0.16) probably_damaging(0.999) TCGA-AL-3473-01 19 19221630 19221630 T - SLC25A42 Frame_Shift_Del p.I301Tfs*22 0.13 TCGA-AL-3473-01 19 36362560 36362560 T A APLP1 Nonsense_Mutation p.L195* 0.16 TCGA-AL-3473-01 19 36582178 36582178 C T WDR62 Missense_Mutation p.S704L 0.16 deleterious(0) probably_damaging(0.98) TCGA-AL-3473-01 19 37678072 37678072 T A ZNF585B Missense_Mutation p.I123F 0.10 tolerated(0.07) benign(0.052) TCGA-AL-3473-01 1 10342493 10342493 T A KIF1B Missense_Mutation p.C400S 0.16 tolerated(0.84) benign(0.036) TCGA-AL-3473-01 1 113657326 113657326 C A LRIG2 Silent p.S786S 0.13 TCGA-AL-3473-01 1 160253370 160253370 C T PEX19 Missense_Mutation p.A44T 0.13 tolerated(0.49) possibly_damaging(0.483) TCGA-AL-3473-01 1 237713899 237713899 G A RYR2 Missense_Mutation p.R1041Q 0.17 probably_damaging(0.948) TCGA-AL-3473-01 1 41503104 41503104 G A SCMH1 Silent p.H526H 0.13 TCGA-AL-3473-01 1 78959187 78959187 G A PTGFR Silent p.A253A 0.14 TCGA-AL-3473-01 20 21143713 21143713 C T RP4-777D9.2 Intron 0.13 TCGA-AL-3473-01 20 47675025 47675025 C A CSE1L Missense_Mutation p.Q9K 0.10 tolerated(0.81) benign(0.165) TCGA-AL-3473-01 20 62598869 62598869 C A ZNF512B Silent p.P43P 0.18 TCGA-AL-3473-01 20 62598870 62598870 G A ZNF512B Missense_Mutation p.P43L 0.18 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-AL-3473-01 2 170029726 170029726 C T LRP2 Missense_Mutation p.A3675T 0.09 benign(0.15) TCGA-AL-3473-01 2 20175308 20175308 T A WDR35 Missense_Mutation p.N185Y 0.18 tolerated(0.06) benign(0.326) TCGA-AL-3473-01 2 228882137 228882137 C T SPHKAP Missense_Mutation p.E1145K 0.17 deleterious(0) probably_damaging(0.928) TCGA-AL-3473-01 2 61275734 61275735 - G PEX13 Frame_Shift_Ins p.V348Gfs*15 0.10 TCGA-AL-3473-01 3 10188203 10188204 - T VHL Frame_Shift_Ins p.W117Lfs*15 0.19 TCGA-AL-3473-01 3 121341915 121341915 C T FBXO40 Missense_Mutation p.P547S 0.18 deleterious(0) probably_damaging(0.998) TCGA-AL-3473-01 3 25832524 25832524 C A OXSM Missense_Mutation p.L5M 0.20 tolerated_low_confidence(0.15) possibly_damaging(0.534) TCGA-AL-3473-01 3 49167097 49167098 GG - LAMB2 Frame_Shift_Del p.P486Qfs*17 0.12 TCGA-AL-3473-01 3 52437889 52437889 C - BAP1 Frame_Shift_Del p.K425Sfs*5 0.20 TCGA-AL-3473-01 3 93624723 93624723 C G PROS1 Missense_Mutation p.G169A 0.15 tolerated(0.17) benign(0.047) TCGA-AL-3473-01 5 140188710 140188710 C T PCDHA4 Silent p.R646R 0.15 TCGA-AL-3473-01 5 17354258 17354258 A C CTD-2139B15.2 RNA 0.16 TCGA-AL-3473-01 5 56542173 56542173 T A GPBP1 Silent p.I182I 0.15 TCGA-AL-3473-01 6 129670492 129670492 G A LAMA2 Missense_Mutation p.A1496T 0.12 deleterious(0.01) benign(0.177) TCGA-AL-3473-01 6 147637421 147637421 G A STXBP5 Silent p.E560E 0.14 TCGA-AL-3473-01 7 102769017 102769017 C T NAPEPLD Nonsense_Mutation p.W69* 0.07 TCGA-AL-3473-01 7 30472766 30472766 A G NOD1 Missense_Mutation p.V884A 0.21 tolerated(1) benign(0.003) TCGA-AL-3473-01 7 35674964 35674964 G T HERPUD2 Missense_Mutation p.P241Q 0.14 deleterious(0.04) benign(0.05) TCGA-AL-3473-01 8 22474942 22474942 G - CCAR2 Frame_Shift_Del p.L620Ffs*36 0.16 TCGA-AL-3473-01 X 107433650 107433650 T G COL4A6 Missense_Mutation p.K467N 0.38 benign(0.403) TCGA-AL-7173-01 10 75672687 75672687 T A PLAU Missense_Mutation p.S67T 0.11 tolerated(0.25) benign(0.039) TCGA-AL-7173-01 11 102822873 102822873 C G MMP13 Missense_Mutation p.E223Q 0.18 deleterious(0) probably_damaging(1) TCGA-AL-7173-01 11 62606983 62606983 C G WDR74 Missense_Mutation p.L20F 0.26 deleterious(0.01) probably_damaging(0.977) TCGA-AL-7173-01 11 64074935 64074935 C A ESRRA Missense_Mutation p.S95Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-AL-7173-01 11 74915493 74915493 C T SLCO2B1 Silent p.F666F 0.21 TCGA-AL-7173-01 12 111885276 111885276 G A SH2B3 Silent p.V388V 0.17 TCGA-AL-7173-01 12 113610194 113610194 A G DDX54 Missense_Mutation p.F415L 0.40 deleterious(0) probably_damaging(1) TCGA-AL-7173-01 12 2910328 2910328 G A FKBP4 Missense_Mutation p.G360R 0.22 deleterious(0) probably_damaging(1) TCGA-AL-7173-01 12 7023220 7023220 A C LRRC23 3'UTR 0.39 TCGA-AL-7173-01 12 7640255 7640255 G A CD163 Missense_Mutation p.R584C 0.05 deleterious(0) probably_damaging(0.991) TCGA-AL-7173-01 12 91449805 91449805 G C KERA Missense_Mutation p.T85S 0.15 tolerated(0.54) benign(0.006) TCGA-AL-7173-01 13 26975735 26975738 GGAC AA CDK8 Frame_Shift_Del p.G415Nfs*114 0.12 TCGA-AL-7173-01 13 60566699 60566699 T A DIAPH3 Missense_Mutation p.I345F 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-AL-7173-01 14 24545747 24545747 G A CPNE6 Silent p.P382P 0.31 TCGA-AL-7173-01 15 45847824 45847824 G A RP11-96O20.2 5'Flank 0.22 TCGA-AL-7173-01 15 65214185 65214185 A - ANKDD1A Frame_Shift_Del p.N112Tfs*14 0.17 TCGA-AL-7173-01 15 74708932 74708932 A C SEMA7A Missense_Mutation p.V262G 0.27 deleterious(0) probably_damaging(1) TCGA-AL-7173-01 15 77406689 77406689 G A PEAK1 Silent p.L1684L 0.25 TCGA-AL-7173-01 16 49670185 49670185 T C ZNF423 Missense_Mutation p.M960V 0.18 deleterious(0.04) possibly_damaging(0.472) TCGA-AL-7173-01 17 18150655 18150655 A C FLII Missense_Mutation p.F835C 0.15 deleterious(0) probably_damaging(0.998) TCGA-AL-7173-01 17 34149828 34149828 C T TAF15 Missense_Mutation p.H159Y 0.06 tolerated_low_confidence(0.09) benign(0.177) TCGA-AL-7173-01 17 38027753 38027753 T C ZPBP2 Missense_Mutation p.L94P 0.27 deleterious(0) probably_damaging(1) TCGA-AL-7173-01 17 7219319 7219319 C A NEURL4 3'UTR 0.33 TCGA-AL-7173-01 19 15562546 15562546 C T RASAL3 3'UTR 0.28 TCGA-AL-7173-01 19 17476968 17476968 T C PLVAP Missense_Mutation p.I136V 0.27 tolerated(0.2) probably_damaging(0.998) TCGA-AL-7173-01 19 35176227 35176227 A G ZNF302 3'UTR 0.23 TCGA-AL-7173-01 19 36361805 36361805 C T APLP1 Missense_Mutation p.P100L 0.31 deleterious(0) probably_damaging(1) TCGA-AL-7173-01 19 40581903 40581903 G C ZNF780A Missense_Mutation p.P150R 0.22 tolerated(0.06) benign(0.215) TCGA-AL-7173-01 19 55449434 55449434 T A NLRP7 Missense_Mutation p.T703S 0.24 tolerated(0.33) benign(0.041) TCGA-AL-7173-01 19 797489 797489 C T PTBP1 5'UTR 0.15 TCGA-AL-7173-01 1 115601516 115601516 G A TSPAN2 Silent p.T144T 0.24 TCGA-AL-7173-01 1 183885638 183885638 G C RGL1 Missense_Mutation p.G638R 0.27 deleterious(0.02) probably_damaging(0.921) TCGA-AL-7173-01 1 8415616 8415616 G T RERE Silent p.P1510P 0.22 TCGA-AL-7173-01 20 61982183 61982183 T C CHRNA4 Missense_Mutation p.M194V 0.25 tolerated(0.12) benign(0.011) TCGA-AL-7173-01 20 62333531 62333531 G C ARFRP1 Missense_Mutation p.D101E 0.29 deleterious(0) probably_damaging(1) TCGA-AL-7173-01 22 20130720 20130720 C T ZDHHC8 Missense_Mutation p.R523C 0.23 deleterious(0) benign(0.002) TCGA-AL-7173-01 22 40745897 40745897 T A ADSL Missense_Mutation p.I72N 0.16 deleterious(0.02) probably_damaging(0.976) TCGA-AL-7173-01 22 44581694 44581694 A T PARVG Missense_Mutation p.K29M 0.23 deleterious(0) probably_damaging(0.977) TCGA-AL-7173-01 22 50684494 50684494 A G HDAC10 Silent p.L560L 0.09 TCGA-AL-7173-01 2 180016091 180016091 T A SESTD1 Missense_Mutation p.T133S 0.42 tolerated(0.5) possibly_damaging(0.5) TCGA-AL-7173-01 2 217724363 217724363 C G TNP1 3'UTR 0.12 TCGA-AL-7173-01 2 225422410 225422410 A G CUL3 Missense_Mutation p.L77P 0.29 deleterious(0) probably_damaging(0.994) TCGA-AL-7173-01 2 225449722 225449722 G T CUL3 Nonsense_Mutation p.S2* 0.24 TCGA-AL-7173-01 2 3483103 3483103 G A TRAPPC12 Silent p.V693V 0.26 TCGA-AL-7173-01 3 149468478 149468478 C T COMMD2 Missense_Mutation p.R130Q 0.19 deleterious(0) probably_damaging(0.969) TCGA-AL-7173-01 3 186362554 186362554 A G FETUB Missense_Mutation p.I147V 0.25 tolerated(0.1) benign(0.011) TCGA-AL-7173-01 3 186790685 186790685 G - ST6GAL1 Frame_Shift_Del p.G252Efs*3 0.19 TCGA-AL-7173-01 3 3209360 3209360 T C CRBN Silent p.R215R 0.07 TCGA-AL-7173-01 4 110865158 110865158 A T EGF Missense_Mutation p.S224C 0.29 deleterious(0.01) possibly_damaging(0.832) TCGA-AL-7173-01 4 162697048 162697048 A G FSTL5 Silent p.D196D 0.05 TCGA-AL-7173-01 5 109026116 109026116 A T MAN2A1 5'UTR 0.12 TCGA-AL-7173-01 5 145552256 145552256 T - LARS Frame_Shift_Del p.K69Nfs*6 0.28 TCGA-AL-7173-01 5 147510840 147510840 G C SPINK5 Missense_Mutation p.D1025H 0.17 tolerated(1) benign(0.003) TCGA-AL-7173-01 5 37187887 37187887 G C C5orf42 Missense_Mutation p.S1290C 0.17 deleterious(0) probably_damaging(1) TCGA-AL-7173-01 5 40964972 40964972 C G C7 Missense_Mutation p.Q627E 0.05 deleterious(0.01) benign(0.284) TCGA-AL-7173-01 5 52204750 52204750 T - ITGA1 Frame_Shift_Del p.L494* 0.19 TCGA-AL-7173-01 6 57246849 57246849 G T PRIM2 Silent p.L192L 0.24 TCGA-AL-7173-01 6 57246850 57246850 G T PRIM2 Missense_Mutation p.D193Y 0.24 deleterious(0) probably_damaging(0.993) TCGA-AL-7173-01 7 101845410 101845410 A T CUX1 Missense_Mutation p.T956S 0.34 deleterious(0.02) unknown(0) TCGA-AL-7173-01 7 116417463 116417463 C T MET Missense_Mutation p.H1112Y 0.34 deleterious(0) probably_damaging(0.996) TCGA-AL-7173-01 7 139030365 139030365 A T LUC7L2 Missense_Mutation p.K86M 0.18 tolerated(0.07) benign(0.382) TCGA-AL-7173-01 7 142658089 142658089 C A KEL Missense_Mutation p.G109V 0.20 deleterious(0) probably_damaging(0.982) TCGA-AL-7173-01 7 143956670 143956670 C T OR2A7 Missense_Mutation p.V18I 0.07 tolerated(0.12) benign(0.003) TCGA-AL-7173-01 7 27134334 27134334 C T HOXA1 Missense_Mutation p.E245K 0.22 deleterious(0) possibly_damaging(0.714) TCGA-AL-7173-01 7 74146900 74146900 G C GTF2I Missense_Mutation p.G401R 0.33 deleterious(0.01) probably_damaging(1) TCGA-AL-7173-01 7 78131031 78131031 C A MAGI2 Silent p.V276V 0.20 TCGA-AL-7173-01 7 82763823 82763823 C G PCLO Missense_Mutation p.A1015P 0.27 unknown(0) TCGA-AL-7173-01 7 99328744 99328744 T A CYP3A7 Nonsense_Mutation p.K35* 0.38 TCGA-AL-7173-01 8 101152996 101152996 C G FBXO43 Missense_Mutation p.D496H 0.22 deleterious(0) probably_damaging(1) TCGA-AL-7173-01 9 134151632 134151632 C T FAM78A 5'UTR 0.36 TCGA-AL-7173-01 9 137801883 137801883 G C FCN1 Missense_Mutation p.L248V 0.20 deleterious(0) possibly_damaging(0.697) TCGA-AL-7173-01 9 139091693 139091693 C T LHX3 Silent p.L100L 0.14 TCGA-AL-7173-01 9 14801824 14801824 C G FREM1 Missense_Mutation p.V1174L 0.23 tolerated(0.18) benign(0.003) TCGA-AL-7173-01 9 34637423 34637423 G A SIGMAR1 Intron 0.30 TCGA-AL-7173-01 X 3544550 3544550 G C PRKX Missense_Mutation p.P242R 0.27 deleterious(0) probably_damaging(0.999) TCGA-AL-7173-01 X 73961092 73961092 C T KIAA2022 Silent p.E1100E 0.05 TCGA-AL-A5DJ-01 10 96702326 96702326 C A CYP2C9 Intron 0.25 TCGA-AL-A5DJ-01 11 128772504 128772504 C T C11orf45 Missense_Mutation p.R129H 0.46 tolerated_low_confidence(0.17) possibly_damaging(0.715) TCGA-AL-A5DJ-01 11 4869479 4869479 A T OR51S1 Silent p.G320G 0.20 TCGA-AL-A5DJ-01 12 18478009 18478009 C T PIK3C2G Silent p.L417L 0.41 TCGA-AL-A5DJ-01 12 7651490 7651490 G A CD163 Missense_Mutation p.A251V 0.20 tolerated(0.14) possibly_damaging(0.9) TCGA-AL-A5DJ-01 14 45577615 45577615 A T PRPF39 Intron 0.19 TCGA-AL-A5DJ-01 14 50092296 50092296 G T DNAAF2 Missense_Mutation p.F826L 0.26 tolerated(0.05) benign(0.404) TCGA-AL-A5DJ-01 15 55731768 55731768 T C DYX1C1 Silent p.K265K 0.25 TCGA-AL-A5DJ-01 16 4163953 4163953 G A ADCY9 Silent p.C497C 0.71 TCGA-AL-A5DJ-01 16 4164162 4164162 G A ADCY9 Missense_Mutation p.R428C 0.18 deleterious(0.02) probably_damaging(0.913) TCGA-AL-A5DJ-01 16 58541744 58541744 C T NDRG4 Missense_Mutation p.T270M 0.13 tolerated(0.11) benign(0.063) TCGA-AL-A5DJ-01 16 67265386 67265386 G A FHOD1 Missense_Mutation p.R818C 0.03 deleterious(0) possibly_damaging(0.893) TCGA-AL-A5DJ-01 17 27207444 27207444 C A FLOT2 3'UTR 0.19 TCGA-AL-A5DJ-01 19 11129655 11129655 G A SMARCA4 Missense_Mutation p.E821K 0.74 probably_damaging(0.999) TCGA-AL-A5DJ-01 19 13002761 13002761 C T GCDH Missense_Mutation p.R82C 0.16 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-AL-A5DJ-01 1 153520965 153520965 C T S100A3 Intron 0.18 TCGA-AL-A5DJ-01 1 172501735 172501735 G T SUCO 5'Flank 0.15 TCGA-AL-A5DJ-01 1 3425692 3425692 G A MEGF6 Missense_Mutation p.A492V 0.26 tolerated(0.58) benign(0.205) TCGA-AL-A5DJ-01 20 7894923 7894923 G A HAO1 Missense_Mutation p.R145W 0.24 deleterious(0.01) possibly_damaging(0.762) TCGA-AL-A5DJ-01 22 43523734 43523734 G T BIK Missense_Mutation p.G65W 0.22 deleterious(0) probably_damaging(0.964) TCGA-AL-A5DJ-01 2 109399079 109399079 T G RANBP2 Missense_Mutation p.L3044V 0.24 deleterious(0.04) possibly_damaging(0.522) TCGA-AL-A5DJ-01 2 113079400 113079400 C G ZC3H6 Silent p.S348S 0.31 TCGA-AL-A5DJ-01 2 16085781 16085781 C T MYCN Silent p.I319I 0.23 TCGA-AL-A5DJ-01 2 208988981 208988981 G A CRYGD Missense_Mutation p.A36V 0.09 tolerated(0.25) benign(0) TCGA-AL-A5DJ-01 2 88913362 88913362 T C EIF2AK3 Silent p.V106V 0.41 TCGA-AL-A5DJ-01 2 98206091 98206091 G T ANKRD36B RNA 0.21 TCGA-AL-A5DJ-01 3 142031582 142031582 G A XRN1 Missense_Mutation p.S1559L 0.22 tolerated_low_confidence(0.19) benign(0.102) TCGA-AL-A5DJ-01 3 183777668 183777668 C T HTR3C Silent p.T326T 0.22 TCGA-AL-A5DJ-01 3 44762365 44762365 G T ZNF502 Missense_Mutation p.G19V 0.45 deleterious(0.01) possibly_damaging(0.578) TCGA-AL-A5DJ-01 3 49135888 49135888 A T QARS Missense_Mutation p.L661Q 0.29 deleterious(0) probably_damaging(1) TCGA-AL-A5DJ-01 3 51994252 51994252 C T PCBP4 Missense_Mutation p.G114S 0.20 deleterious(0.02) probably_damaging(1) TCGA-AL-A5DJ-01 4 108955610 108955610 C T HADH 3'UTR 0.19 TCGA-AL-A5DJ-01 4 170625204 170625204 T C CLCN3 Missense_Mutation p.I540T 0.29 deleterious(0.04) benign(0.115) TCGA-AL-A5DJ-01 4 175413038 175413038 C T HPGD 3'UTR 0.18 TCGA-AL-A5DJ-01 5 74018240 74018240 T G GFM2 Missense_Mutation p.K725N 0.06 deleterious(0) possibly_damaging(0.794) TCGA-AL-A5DJ-01 6 110301525 110301525 A G GPR6 3'UTR 0.21 TCGA-AL-A5DJ-01 6 26217562 26217562 G A HIST1H2AE Silent p.K120K 0.63 TCGA-AL-A5DJ-01 6 36238386 36238386 G A PNPLA1 Silent p.A50A 0.84 TCGA-AL-A5DJ-01 7 1132621 1132622 CG - GPER1 3'UTR 0.36 TCGA-AL-A5DJ-01 7 135282924 135282924 G A NUP205 Missense_Mutation p.R748H 0.32 tolerated(0.23) benign(0.066) TCGA-AL-A5DJ-01 7 151859226 151859226 C A KMT2C Missense_Mutation p.E3812D 0.17 benign(0.012) TCGA-AL-A5DJ-01 7 63720609 63720609 C A ZNF679 Missense_Mutation p.T17K 0.06 deleterious(0.03) benign(0.311) TCGA-AL-A5DJ-01 8 140630623 140630623 C T KCNK9 Missense_Mutation p.E335K 0.42 tolerated(0.25) benign(0.368) TCGA-AL-A5DJ-01 X 106845237 106845237 G C FRMPD3 Missense_Mutation p.R1356T 0.12 deleterious_low_confidence(0) benign(0.143) TCGA-AL-A5DJ-01 X 122338407 122338407 C A GRIA3 Intron 0.34 TCGA-AL-A5DJ-01 X 140996146 140996146 G T MAGEC1 Missense_Mutation p.G986W 0.29 deleterious(0) unknown(0) TCGA-AL-A5DJ-01 X 151532942 151532942 C T GABRA3 Missense_Mutation p.R34Q 0.46 tolerated_low_confidence(0.41) benign(0.005) TCGA-AL-A5DJ-01 X 75392944 75392944 G A PBDC1 5'UTR 0.03 TCGA-AT-A5NU-01 10 102675796 102675796 C T FAM178A Nonsense_Mutation p.Q61* 0.36 TCGA-AT-A5NU-01 10 115964520 115964520 G A TDRD1 Missense_Mutation p.G389R 0.44 tolerated(0.08) probably_damaging(0.998) TCGA-AT-A5NU-01 10 122665493 122665493 T A WDR11 Missense_Mutation p.S1133T 0.42 deleterious(0) benign(0.371) TCGA-AT-A5NU-01 11 56000572 56000573 AA - OR5T2 Frame_Shift_Del p.F30Yfs*17 0.38 TCGA-AT-A5NU-01 11 61557365 61557365 G A TMEM258 Missense_Mutation p.R48C 0.05 tolerated(0.05) benign(0.028) TCGA-AT-A5NU-01 11 64603951 64603963 CCAGCTGGGGGCC - CDC42BPG Frame_Shift_Del p.G475Vfs*65 0.28 TCGA-AT-A5NU-01 11 67817430 67817430 A G TCIRG1 Missense_Mutation p.E672G 0.51 tolerated(0.31) benign(0.102) TCGA-AT-A5NU-01 11 89868775 89868775 A G NAALAD2 Missense_Mutation p.H44R 0.16 tolerated(0.22) benign(0.002) TCGA-AT-A5NU-01 12 104182695 104182695 G C NT5DC3 Missense_Mutation p.P341R 0.44 deleterious(0) probably_damaging(1) TCGA-AT-A5NU-01 14 58796735 58796735 A C ARID4A Missense_Mutation p.S252R 0.44 tolerated(0.34) probably_damaging(0.966) TCGA-AT-A5NU-01 14 89338717 89338717 C T TTC8 Missense_Mutation p.A423V 0.45 tolerated(0.05) benign(0.13) TCGA-AT-A5NU-01 15 31342655 31342655 A T TRPM1 Missense_Mutation p.V482E 0.38 tolerated(0.17) benign(0.004) TCGA-AT-A5NU-01 15 35189882 35189882 T G AQR Silent p.G756G 0.40 TCGA-AT-A5NU-01 16 64981793 64981793 A G CDH11 Missense_Mutation p.Y702H 0.52 tolerated(0.54) probably_damaging(0.93) TCGA-AT-A5NU-01 16 67690142 67690142 G C RLTPR Missense_Mutation p.D1252H 0.47 deleterious(0) probably_damaging(0.999) TCGA-AT-A5NU-01 17 1679947 1679953 GAGAACT - SERPINF1 Frame_Shift_Del p.E304Rfs*12 0.58 TCGA-AT-A5NU-01 17 73702116 73702116 G C SAP30BP Missense_Mutation p.G230A 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-AT-A5NU-01 17 74738356 74738356 G A MFSD11 Splice_Site p.X146_splice 0.06 TCGA-AT-A5NU-01 17 9501596 9501596 C A WDR16 Silent p.I194I 0.30 TCGA-AT-A5NU-01 18 20768825 20768825 C T CABLES1 Missense_Mutation p.S290F 0.32 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-AT-A5NU-01 18 2945954 2945954 T A LPIN2 Intron 0.55 TCGA-AT-A5NU-01 19 1041554 1041554 A T ABCA7 Missense_Mutation p.I38F 0.35 deleterious(0) probably_damaging(0.996) TCGA-AT-A5NU-01 19 31768208 31768208 C T TSHZ3 Missense_Mutation p.V831I 0.40 tolerated(0.23) benign(0.022) TCGA-AT-A5NU-01 19 33873260 33873260 G T CEBPG 3'UTR 0.39 TCGA-AT-A5NU-01 19 33873262 33873262 A G CEBPG 3'UTR 0.38 TCGA-AT-A5NU-01 19 35231657 35231657 T C ZNF181 Missense_Mutation p.I124T 0.27 tolerated(0.35) benign(0.001) TCGA-AT-A5NU-01 19 38850108 38850108 A T CATSPERG Splice_Site p.X499_splice 0.48 TCGA-AT-A5NU-01 19 39966780 39966780 G C SUPT5H Missense_Mutation p.E1028D 0.09 tolerated(1) benign(0.001) TCGA-AT-A5NU-01 19 41381550 41381550 G A CYP2A7 3'UTR 0.43 TCGA-AT-A5NU-01 19 46002036 46002036 C T PPM1N Silent p.L102L 0.15 TCGA-AT-A5NU-01 1 110170816 110170816 C G AMPD2 Missense_Mutation p.R452G 0.44 deleterious(0.03) possibly_damaging(0.477) TCGA-AT-A5NU-01 1 120165395 120165395 G A ZNF697 Missense_Mutation p.A524V 0.42 tolerated(0.21) benign(0.169) TCGA-AT-A5NU-01 1 167515417 167515417 T A CREG1 Missense_Mutation p.I194L 0.44 tolerated(0.07) probably_damaging(0.966) TCGA-AT-A5NU-01 1 48918785 48918785 C T SPATA6 Missense_Mutation p.V24M 0.42 tolerated(0.12) benign(0.402) TCGA-AT-A5NU-01 1 89352944 89352944 C G GTF2B Missense_Mutation p.G42R 0.48 deleterious(0.02) benign(0.229) TCGA-AT-A5NU-01 1 92707844 92707844 A C C1orf146 Missense_Mutation p.I48L 0.56 tolerated(0.16) benign(0.156) TCGA-AT-A5NU-01 21 45978023 45978023 G A KRTAP10-3 Silent p.A192A 0.04 TCGA-AT-A5NU-01 22 30818390 30818391 - A SEC14L2 Frame_Shift_Ins p.*404Ifs*30 0.28 TCGA-AT-A5NU-01 22 38273745 38273745 G A EIF3L Missense_Mutation p.R381H 0.39 tolerated(0.07) benign(0.125) TCGA-AT-A5NU-01 22 40283710 40283710 A C ENTHD1 Missense_Mutation p.S15A 0.38 deleterious(0) probably_damaging(0.999) TCGA-AT-A5NU-01 22 42339699 42339699 C T CENPM Missense_Mutation p.R106Q 0.40 tolerated(0.32) benign(0.005) TCGA-AT-A5NU-01 2 109087879 109087879 T A GCC2 Missense_Mutation p.S698R 0.23 tolerated(0.53) benign(0.235) TCGA-AT-A5NU-01 2 148695764 148695764 T A ORC4 Missense_Mutation p.Q358L 0.06 deleterious(0.02) benign(0.24) TCGA-AT-A5NU-01 2 152579988 152579989 - A NEB Frame_Shift_Ins p.E209* 0.34 TCGA-AT-A5NU-01 2 159459582 159459582 C A PKP4 Missense_Mutation p.S82R 0.23 deleterious(0.02) benign(0.082) TCGA-AT-A5NU-01 2 175331330 175331330 A G GPR155 Missense_Mutation p.L403S 0.32 deleterious(0) probably_damaging(1) TCGA-AT-A5NU-01 2 203972839 203972839 G A NBEAL1 Nonsense_Mutation p.W597* 0.58 TCGA-AT-A5NU-01 2 219222408 219222408 C T C2orf62 Silent p.A90A 0.49 TCGA-AT-A5NU-01 2 37455042 37455042 T A CEBPZ Missense_Mutation p.N432Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-AT-A5NU-01 2 84517826 84517826 G T FUNDC2P2 RNA 0.12 TCGA-AT-A5NU-01 3 122354765 122354765 C T PARP15 Nonsense_Mutation p.R619* 0.31 TCGA-AT-A5NU-01 3 136676867 136676867 C T IL20RB 5'UTR 0.50 TCGA-AT-A5NU-01 3 184935956 184935956 T A EHHADH Missense_Mutation p.E179V 0.10 deleterious(0.01) possibly_damaging(0.827) TCGA-AT-A5NU-01 3 49161312 49161312 G C LAMB2 Missense_Mutation p.Q1216E 0.69 tolerated(0.5) benign(0.017) TCGA-AT-A5NU-01 3 97595925 97595925 A T CRYBG3 Nonsense_Mutation p.K15* 0.58 TCGA-AT-A5NU-01 4 1316285 1316285 G T MAEA Missense_Mutation p.K191N 0.41 deleterious(0) probably_damaging(0.936) TCGA-AT-A5NU-01 4 145916549 145916549 G T ANAPC10 Missense_Mutation p.F178L 0.53 tolerated(0.21) benign(0.022) TCGA-AT-A5NU-01 4 156268933 156268933 T G MAP9 3'UTR 0.27 TCGA-AT-A5NU-01 4 20535255 20535255 T A SLIT2 Silent p.G583G 0.25 TCGA-AT-A5NU-01 5 109904274 109904274 T G TMEM232 Missense_Mutation p.K443N 0.48 deleterious(0.01) possibly_damaging(0.888) TCGA-AT-A5NU-01 5 133895661 133895661 C A JADE2 Missense_Mutation p.N151K 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-AT-A5NU-01 5 135561911 135561911 T A TRPC7 Silent p.R691R 0.48 TCGA-AT-A5NU-01 5 137903216 137903216 T C HSPA9 Missense_Mutation p.N215S 0.11 deleterious_low_confidence(0.02) benign(0.013) TCGA-AT-A5NU-01 5 140953451 140953451 G T DIAPH1 Missense_Mutation p.P656T 0.47 unknown(0) TCGA-AT-A5NU-01 5 148747898 148747898 A T PCYOX1L Missense_Mutation p.Q389L 0.40 tolerated(0.33) probably_damaging(0.984) TCGA-AT-A5NU-01 5 156346423 156346423 T A TIMD4 3'UTR 0.05 TCGA-AT-A5NU-01 5 167937680 167937680 G T RARS Nonsense_Mutation p.E481* 0.39 TCGA-AT-A5NU-01 5 176943307 176943307 G C DDX41 Missense_Mutation p.L94V 0.42 tolerated(0.11) probably_damaging(0.987) TCGA-AT-A5NU-01 5 33658354 33658354 A G ADAMTS12 Silent p.S375S 0.06 TCGA-AT-A5NU-01 5 90281309 90281309 C T GPR98 Missense_Mutation p.S6041L 0.34 benign(0.012) TCGA-AT-A5NU-01 6 105563684 105563684 G A BVES Missense_Mutation p.H279Y 0.35 tolerated(0.16) benign(0.063) TCGA-AT-A5NU-01 6 139694300 139694309 CACACGAAGT - CITED2 Frame_Shift_Del p.D258Afs*8 0.33 TCGA-AT-A5NU-01 6 40399589 40399589 G T LRFN2 Missense_Mutation p.P422T 0.43 tolerated(0.3) benign(0.06) TCGA-AT-A5NU-01 6 97634560 97634560 C T MMS22L Missense_Mutation p.M682I 0.34 tolerated(0.4) benign(0.032) TCGA-AT-A5NU-01 7 102553614 102553614 G A FBXL13 Silent p.F309F 0.22 TCGA-AT-A5NU-01 7 107599767 107599767 C G LAMB1 Missense_Mutation p.A873P 0.04 deleterious(0) probably_damaging(0.962) TCGA-AT-A5NU-01 7 107605061 107605061 G C LAMB1 Missense_Mutation p.P545R 0.37 tolerated(0.06) benign(0.248) TCGA-AT-A5NU-01 7 142640932 142640932 G T KEL Missense_Mutation p.S510R 0.04 deleterious(0) probably_damaging(0.933) TCGA-AT-A5NU-01 7 44047040 44047040 G A SPDYE1 Missense_Mutation p.R269H 0.61 tolerated_low_confidence(1) benign(0.007) TCGA-AT-A5NU-01 7 98988630 98988630 A G ARPC1B Silent p.V205V 0.56 TCGA-AT-A5NU-01 8 144808646 144808646 T C FAM83H Silent p.Q995Q 0.04 TCGA-AT-A5NU-01 8 17916973 17916973 T - ASAH1 Frame_Shift_Del p.E322Dfs*36 0.28 TCGA-AT-A5NU-01 8 27097616 27097616 G - STMN4 Frame_Shift_Del p.Q155Kfs*56 0.08 TCGA-AT-A5NU-01 X 105280775 105280775 A G SERPINA7 Missense_Mutation p.I92T 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-AT-A5NU-01 X 106173805 106173805 G T CLDN2 3'UTR 0.86 TCGA-AT-A5NU-01 X 123637524 123637524 G T TENM1 Missense_Mutation p.P1111T 0.87 tolerated(0.25) benign(0.003) TCGA-AT-A5NU-01 X 153200984 153200985 - T RENBP Frame_Shift_Ins p.E375Rfs*? 0.51 TCGA-AT-A5NU-01 X 48676773 48676773 A G HDAC6 Missense_Mutation p.D714G 0.87 deleterious(0) probably_damaging(0.967) TCGA-AT-A5NU-01 X 57146532 57146532 A T SPIN2B Silent p.L177L 0.85 TCGA-B1-5398-01 10 101458575 101458575 G C ENTPD7 Missense_Mutation p.G432A 0.18 tolerated(0.09) probably_damaging(0.951) TCGA-B1-5398-01 10 104156717 104156717 C T NFKB2 Silent p.D100D 0.14 TCGA-B1-5398-01 10 62648933 62648933 T A RHOBTB1 Nonsense_Mutation p.R165* 0.11 TCGA-B1-5398-01 11 104825523 104825523 C T CASP4 Missense_Mutation p.M71I 0.16 tolerated(1) benign(0.002) TCGA-B1-5398-01 11 113651037 113651037 A G CLDN25 Missense_Mutation p.I174V 0.18 tolerated(0.31) benign(0.003) TCGA-B1-5398-01 11 45926284 45926284 C T MAPK8IP1 Missense_Mutation p.R598W 0.18 deleterious(0) probably_damaging(0.998) TCGA-B1-5398-01 11 47345285 47345285 G C MADD Missense_Mutation p.E1481Q 0.20 deleterious(0) probably_damaging(0.932) TCGA-B1-5398-01 11 4904096 4904096 A C OR51T1 Silent p.R350R 0.08 TCGA-B1-5398-01 11 55563326 55563326 T A OR5D14 Missense_Mutation p.C99S 0.09 deleterious(0) probably_damaging(1) TCGA-B1-5398-01 11 6291417 6291417 G A CCKBR Missense_Mutation p.R168H 0.22 deleterious(0) probably_damaging(0.985) TCGA-B1-5398-01 11 63064875 63064875 C T SLC22A10 Missense_Mutation p.R203C 0.14 deleterious(0.01) probably_damaging(0.913) TCGA-B1-5398-01 11 64532812 64532812 A T SF1 3'UTR 0.15 TCGA-B1-5398-01 11 65266413 65266413 G T MALAT1 RNA 0.17 TCGA-B1-5398-01 11 71724282 71724282 C T NUMA1 Missense_Mutation p.A1423T 0.18 possibly_damaging(0.836) TCGA-B1-5398-01 11 71948376 71948376 C T INPPL1 Missense_Mutation p.R1030W 0.17 tolerated(0.12) benign(0.428) TCGA-B1-5398-01 11 73021440 73021440 T C ARHGEF17 Missense_Mutation p.I586T 0.14 tolerated_low_confidence(0.12) benign(0.01) TCGA-B1-5398-01 11 76944148 76944148 G C GDPD4 Silent p.A437A 0.09 TCGA-B1-5398-01 11 82877690 82877690 A G PCF11 Missense_Mutation p.N584S 0.18 tolerated(0.15) possibly_damaging(0.633) TCGA-B1-5398-01 12 105433493 105433493 C T ALDH1L2 Silent p.K681K 0.15 TCGA-B1-5398-01 12 26217472 26217472 A T RASSF8 Missense_Mutation p.T49S 0.18 tolerated(0.2) benign(0.379) TCGA-B1-5398-01 12 2909578 2909578 T G FKBP4 Silent p.A289A 0.18 TCGA-B1-5398-01 12 40681240 40681240 A T LRRK2 Missense_Mutation p.N863I 0.20 tolerated(0.24) benign(0.128) TCGA-B1-5398-01 12 42858293 42858293 G A PRICKLE1 Nonsense_Mutation p.Q515* 0.18 TCGA-B1-5398-01 12 43858498 43858498 C T ADAMTS20 Missense_Mutation p.E469K 0.09 tolerated(0.14) benign(0.185) TCGA-B1-5398-01 12 46318586 46318586 T A SCAF11 Silent p.P1277P 0.19 TCGA-B1-5398-01 12 57922959 57922959 C T MBD6 Missense_Mutation p.P985L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-B1-5398-01 12 62795034 62795034 T A USP15 Silent p.T914T 0.23 TCGA-B1-5398-01 12 66838463 66838463 T - GRIP1 Frame_Shift_Del p.I478Ffs*45 0.22 TCGA-B1-5398-01 12 6707540 6707540 G A CHD4 Nonsense_Mutation p.Q512* 0.15 TCGA-B1-5398-01 13 113803360 113803360 C - F10 Frame_Shift_Del p.T333Pfs*4 0.15 TCGA-B1-5398-01 13 36382392 36382396 GGAGA - DCLK1 Frame_Shift_Del p.S610Ifs*4 0.25 TCGA-B1-5398-01 14 102323022 102323022 G A PPP2R5C Splice_Site p.X63_splice 0.18 TCGA-B1-5398-01 14 104027517 104027517 A T BAG5 Silent p.T36T 0.18 TCGA-B1-5398-01 14 20612708 20612708 T G OR4N5 Missense_Mutation p.S272A 0.18 tolerated(0.29) benign(0.047) TCGA-B1-5398-01 14 45667882 45667882 T - FANCM Frame_Shift_Del p.Y1918Mfs*5 0.23 TCGA-B1-5398-01 14 50472313 50472313 T C C14orf182 Missense_Mutation p.R69G 0.15 deleterious_low_confidence(0.05) benign(0.003) TCGA-B1-5398-01 14 75516130 75516130 T A MLH3 Nonsense_Mutation p.K77* 0.17 TCGA-B1-5398-01 14 91642321 91642321 T A C14orf159 Missense_Mutation p.D217E 0.18 tolerated(0.49) benign(0.015) TCGA-B1-5398-01 15 51993377 51993377 A G SCG3 Silent p.G381G 0.21 TCGA-B1-5398-01 16 11217780 11217780 G A CLEC16A Missense_Mutation p.R817H 0.12 tolerated(0.23) benign(0.012) TCGA-B1-5398-01 16 2807812 2807812 A T SRRM2 Missense_Mutation p.L127F 0.16 unknown(0) TCGA-B1-5398-01 16 28157419 28157419 T A XPO6 Missense_Mutation p.N444Y 0.28 deleterious(0.02) benign(0.309) TCGA-B1-5398-01 16 29848119 29848119 T G MVP Missense_Mutation p.L250R 0.07 deleterious(0) benign(0.343) TCGA-B1-5398-01 16 30723210 30723210 A - SRCAP Frame_Shift_Del p.T517Qfs*62 0.18 TCGA-B1-5398-01 16 31090723 31090723 G A ZNF646 Silent p.E1026E 0.14 TCGA-B1-5398-01 16 58633189 58633190 - CCAC CNOT1 Frame_Shift_Ins p.D18Gfs*26 0.25 TCGA-B1-5398-01 16 69143465 69143465 T A HAS3 Missense_Mutation p.L56Q 0.13 deleterious(0) probably_damaging(0.95) TCGA-B1-5398-01 16 84063153 84063153 A G SLC38A8 Silent p.P212P 0.34 TCGA-B1-5398-01 17 10626593 10626593 G C TMEM220 Missense_Mutation p.S114C 0.14 deleterious(0) probably_damaging(0.983) TCGA-B1-5398-01 17 18653137 18653137 T A FBXW10 Nonsense_Mutation p.L258* 0.16 TCGA-B1-5398-01 17 40262859 40262859 T A DHX58 Missense_Mutation p.Q148L 0.17 tolerated(0.07) benign(0.009) TCGA-B1-5398-01 17 45699224 45699224 C T NPEPPS Nonsense_Mutation p.R900* 0.08 TCGA-B1-5398-01 17 74303551 74303551 C G QRICH2 Missense_Mutation p.A11P 0.07 tolerated_low_confidence(0.33) benign(0.003) TCGA-B1-5398-01 18 47375980 47375980 T A MYO5B Missense_Mutation p.K1424N 0.13 deleterious(0) possibly_damaging(0.833) TCGA-B1-5398-01 19 11489162 11489162 A G EPOR Missense_Mutation p.M342T 0.23 tolerated(0.93) benign(0) TCGA-B1-5398-01 19 24309780 24309780 A G ZNF254 Silent p.E326E 0.13 TCGA-B1-5398-01 19 34924279 34924279 G A UBA2 Missense_Mutation p.R107Q 0.18 tolerated(0.32) benign(0.028) TCGA-B1-5398-01 19 54656944 54656944 T A CNOT3 Intron 0.30 TCGA-B1-5398-01 19 54872527 54872527 C A LAIR1 Silent p.V120V 0.18 TCGA-B1-5398-01 19 58018029 58018029 G A ZNF773 Missense_Mutation p.R189K 0.10 tolerated(0.22) benign(0.005) TCGA-B1-5398-01 19 58018032 58018032 A G ZNF773 Missense_Mutation p.H190R 0.09 tolerated(0.19) benign(0.004) TCGA-B1-5398-01 1 145562384 145562384 G C ANKRD35 Missense_Mutation p.R691P 0.13 deleterious(0) probably_damaging(0.998) TCGA-B1-5398-01 1 16907371 16907371 C T NBPF1 Missense_Mutation p.G487D 0.03 tolerated(0.32) probably_damaging(0.999) TCGA-B1-5398-01 1 169094257 169094257 T G ATP1B1 Missense_Mutation p.M121R 0.18 tolerated(0.21) benign(0.046) TCGA-B1-5398-01 1 192778190 192778190 G T RGS2 5'UTR 0.21 TCGA-B1-5398-01 1 19440382 19440382 A C UBR4 Intron 0.13 TCGA-B1-5398-01 1 231858382 231858382 T A DISC1 Intron 0.16 TCGA-B1-5398-01 1 235386544 235386544 T C ARID4B Silent p.G334G 0.11 TCGA-B1-5398-01 1 63066787 63066787 T A ANGPTL3 Missense_Mutation p.I214N 0.14 tolerated(0.68) benign(0) TCGA-B1-5398-01 20 31015986 31015986 A G ASXL1 Missense_Mutation p.E103G 0.10 deleterious(0) probably_damaging(0.997) TCGA-B1-5398-01 20 36989402 36989402 T G LBP Silent p.P211P 0.13 TCGA-B1-5398-01 20 57769662 57769662 G A ZNF831 Silent p.A1196A 0.07 TCGA-B1-5398-01 21 46902710 46902710 G A COL18A1 Missense_Mutation p.G739D 0.16 probably_damaging(0.969) TCGA-B1-5398-01 22 24226511 24226511 C T SLC2A11 Silent p.A402A 0.16 TCGA-B1-5398-01 22 41076973 41076973 A T MCHR1 Missense_Mutation p.S104C 0.15 deleterious(0.02) benign(0.41) TCGA-B1-5398-01 22 42149973 42149973 T G MEI1 Missense_Mutation p.V625G 0.14 deleterious(0.01) possibly_damaging(0.84) TCGA-B1-5398-01 22 46790151 46790151 A T CELSR1 Missense_Mutation p.L1951H 0.16 tolerated(0.21) possibly_damaging(0.897) TCGA-B1-5398-01 2 111921836 111921836 T G BCL2L11 3'UTR 0.12 TCGA-B1-5398-01 2 166915109 166915109 C T SCN1A Silent p.R118R 0.14 TCGA-B1-5398-01 2 170815017 170815017 G A UBR3 Missense_Mutation p.M1205I 0.20 deleterious(0.01) probably_damaging(0.921) TCGA-B1-5398-01 2 180308133 180308133 A G ZNF385B Silent p.P420P 0.19 TCGA-B1-5398-01 2 182765433 182765433 T C SSFA2 Silent p.L172L 0.17 TCGA-B1-5398-01 2 191797555 191797555 A G GLS Intron 0.20 TCGA-B1-5398-01 2 201478584 201478584 C T AOX1 Silent p.S502S 0.22 TCGA-B1-5398-01 2 227872134 227872134 C T COL4A4 Silent p.Q1660Q 0.15 TCGA-B1-5398-01 2 234652351 234652351 G A UGT1A10 Intron 0.22 TCGA-B1-5398-01 2 234652372 234652372 A G UGT1A10 Intron 0.17 TCGA-B1-5398-01 2 235962373 235962373 C - SH3BP4 Frame_Shift_Del p.T936Lfs*4 0.16 TCGA-B1-5398-01 2 238234213 238234213 A T COL6A3 Silent p.V3161V 0.23 TCGA-B1-5398-01 2 239184526 239184526 A C PER2 Silent p.S102S 0.17 TCGA-B1-5398-01 2 54135515 54135515 T C PSME4 Missense_Mutation p.H909R 0.16 tolerated(0.22) benign(0.01) TCGA-B1-5398-01 2 70314950 70314950 A G PCBP1 Silent p.V25V 0.25 TCGA-B1-5398-01 3 179334831 179334831 A C NDUFB5 Missense_Mutation p.K114T 0.36 deleterious(0) possibly_damaging(0.876) TCGA-B1-5398-01 3 183706444 183706444 C T ABCC5 Missense_Mutation p.R120H 0.29 tolerated(0.55) benign(0.003) TCGA-B1-5398-01 3 25773885 25773885 A T NGLY1 Silent p.P450P 0.35 TCGA-B1-5398-01 3 38891987 38891988 GC - SCN11A Frame_Shift_Del p.L1438Sfs*5 0.22 TCGA-B1-5398-01 3 50155671 50155671 G T RBM5 Intron 0.53 TCGA-B1-5398-01 4 156725753 156725753 A G GUCY1B3 Missense_Mutation p.I521M 0.12 deleterious(0) probably_damaging(0.998) TCGA-B1-5398-01 4 178243705 178243705 C G NEIL3 Silent p.L83L 0.13 TCGA-B1-5398-01 4 186380443 186380443 T A CCDC110 Missense_Mutation p.N433I 0.19 deleterious(0) probably_damaging(1) TCGA-B1-5398-01 4 419663 419663 A T ABCA11P RNA 0.31 TCGA-B1-5398-01 4 71201158 71201158 T - CABS1 Frame_Shift_Del p.S136Pfs*4 0.15 TCGA-B1-5398-01 4 74014608 74014608 T A ANKRD17 Missense_Mutation p.N497Y 0.15 probably_damaging(1) TCGA-B1-5398-01 4 83719607 83719607 C G SCD5 Missense_Mutation p.E28D 0.17 tolerated(0.54) benign(0.008) TCGA-B1-5398-01 5 112458403 112458403 A T MCC Silent p.S335S 0.08 TCGA-B1-5398-01 5 140222316 140222316 G C PCDHA8 Silent p.P470P 0.15 TCGA-B1-5398-01 5 142513635 142513635 T A ARHGAP26 Missense_Mutation p.L601Q 0.17 deleterious(0.02) possibly_damaging(0.766) TCGA-B1-5398-01 5 145641187 145641187 T G RBM27 Missense_Mutation p.L670V 0.15 deleterious(0.03) possibly_damaging(0.854) TCGA-B1-5398-01 5 173370039 173370039 T G CPEB4 Nonsense_Mutation p.Y423* 0.13 TCGA-B1-5398-01 5 31983432 31983432 C G PDZD2 Silent p.T216T 0.21 TCGA-B1-5398-01 5 35026613 35026613 A C AGXT2 Missense_Mutation p.C258G 0.09 tolerated(0.38) benign(0.005) TCGA-B1-5398-01 5 50683584 50683584 G T ISL1 Splice_Site p.X160_splice 0.32 TCGA-B1-5398-01 5 71739940 71739940 G C ZNF366 Nonsense_Mutation p.Y626* 0.17 TCGA-B1-5398-01 6 10796389 10796389 C G MAK Missense_Mutation p.D329H 0.22 tolerated(0.07) benign(0.016) TCGA-B1-5398-01 6 110086287 110086287 A T FIG4 Missense_Mutation p.K502N 0.17 deleterious(0) possibly_damaging(0.814) TCGA-B1-5398-01 6 30679993 30679993 C T MDC1 Missense_Mutation p.D576N 0.20 tolerated(0.1) benign(0.435) TCGA-B1-5398-01 6 31778274 31778274 G T HSPA1L Silent p.A492A 0.18 TCGA-B1-5398-01 6 33169242 33169242 G C SLC39A7 Missense_Mutation p.G74R 0.24 deleterious(0.05) unknown(0) TCGA-B1-5398-01 6 70451754 70451755 - AA LMBRD1 Frame_Shift_Ins p.L163Ffs*2 0.16 TCGA-B1-5398-01 6 83075159 83075159 G - TPBG Frame_Shift_Del p.A161Lfs*18 0.19 TCGA-B1-5398-01 7 107115465 107115465 T A GPR22 Silent p.S320S 0.18 TCGA-B1-5398-01 7 123136764 123136764 T C IQUB Missense_Mutation p.Y407C 0.22 deleterious(0) probably_damaging(0.995) TCGA-B1-5398-01 7 140453193 140453193 T C BRAF Missense_Mutation p.N581S 0.17 deleterious(0.04) benign(0.082) TCGA-B1-5398-01 7 16837318 16837318 A G AGR2 Missense_Mutation p.Y111H 0.21 tolerated(1) benign(0.075) TCGA-B1-5398-01 7 16837319 16837319 C A AGR2 Splice_Site p.X111_splice 0.19 TCGA-B1-5398-01 7 20778604 20778604 A G ABCB5 Splice_Site p.X956_splice 0.14 TCGA-B1-5398-01 7 66459200 66459200 T C SBDS Missense_Mutation p.Q86R 0.17 tolerated(0.06) benign(0.123) TCGA-B1-5398-01 8 124031432 124031432 T G DERL1 Intron 0.14 TCGA-B1-5398-01 9 123591454 123591454 T C PSMD5 Silent p.E198E 0.14 TCGA-B1-5398-01 9 131339498 131339498 T C SPTAN1 Silent p.A292A 0.22 TCGA-B1-5398-01 9 138594079 138594079 G C KCNT1 5'UTR 0.26 TCGA-B1-5398-01 9 138683918 138683918 G A KCNT1 Missense_Mutation p.V1207M 0.16 tolerated(0.1) benign(0.094) TCGA-B1-5398-01 9 86485505 86485505 T A KIF27 Nonsense_Mutation p.K896* 0.13 TCGA-B1-5398-01 9 90254289 90254289 G C DAPK1 Missense_Mutation p.L148F 0.15 deleterious(0.01) possibly_damaging(0.532) TCGA-B1-5398-01 X 2826885 2826885 T C ARSD Splice_Site p.X433_splice 0.26 TCGA-B1-7332-01 10 70749011 70749011 G C KIAA1279 Silent p.A141A 0.61 TCGA-B1-7332-01 13 30814673 30814673 T C KATNAL1 Missense_Mutation p.K217R 0.52 deleterious(0) probably_damaging(0.999) TCGA-B1-7332-01 15 72637848 72637848 A T HEXA Missense_Mutation p.L489M 0.14 tolerated(0.11) benign(0.006) TCGA-B1-7332-01 15 84568410 84568410 G T ADAMTSL3 Missense_Mutation p.V543L 0.07 deleterious(0.03) benign(0.012) TCGA-B1-7332-01 16 21666647 21666647 G T METTL9 Missense_Mutation p.G284V 0.25 deleterious(0) probably_damaging(0.998) TCGA-B1-7332-01 16 2256032 2256032 A C MLST8 Intron 0.06 TCGA-B1-7332-01 17 18881908 18881908 G A FAM83G Silent p.V357V 0.14 TCGA-B1-7332-01 17 3493543 3493543 T C SHPK Intron 0.15 TCGA-B1-7332-01 17 44109553 44109553 A G KANSL1 Missense_Mutation p.S984P 0.37 tolerated(0.22) benign(0.001) TCGA-B1-7332-01 17 47388762 47388762 A G ZNF652 Silent p.H407H 0.13 TCGA-B1-7332-01 17 4891638 4891638 G C INCA1 3'UTR 0.48 TCGA-B1-7332-01 18 2772342 2772342 C T SMCHD1 Missense_Mutation p.T1716I 0.37 tolerated(0.08) benign(0.094) TCGA-B1-7332-01 19 15558957 15558957 C T WIZ Silent p.K54K 0.39 TCGA-B1-7332-01 19 17476947 17476947 A C PLVAP Missense_Mutation p.C143G 0.38 deleterious(0.01) probably_damaging(1) TCGA-B1-7332-01 19 17664416 17664416 C - FAM129C 3'UTR 0.28 TCGA-B1-7332-01 19 40903295 40903295 C T PRX Missense_Mutation p.V322M 0.25 tolerated(0.09) possibly_damaging(0.781) TCGA-B1-7332-01 19 45666434 45666434 C T TRAPPC6A 3'UTR 0.26 TCGA-B1-7332-01 1 110584419 110584419 G T STRIP1 Missense_Mutation p.C274F 0.34 deleterious(0) probably_damaging(0.996) TCGA-B1-7332-01 1 110584420 110584420 C T STRIP1 Silent p.C274C 0.33 TCGA-B1-7332-01 1 156704225 156704225 C T RRNAD1 Missense_Mutation p.P354L 0.33 deleterious(0) probably_damaging(0.986) TCGA-B1-7332-01 1 16360221 16360221 T G CLCNKA 3'UTR 0.45 TCGA-B1-7332-01 1 169096573 169096573 A T ATP1B1 Missense_Mutation p.E165V 0.40 tolerated(0.11) benign(0.009) TCGA-B1-7332-01 1 182798130 182798130 T A NPL 3'UTR 0.31 TCGA-B1-7332-01 1 183253891 183253891 G C NMNAT2 Missense_Mutation p.S161R 0.27 tolerated(0.24) possibly_damaging(0.478) TCGA-B1-7332-01 1 210006621 210006621 A - DIEXF Frame_Shift_Del p.K161Nfs*23 0.28 TCGA-B1-7332-01 1 211654645 211654645 C A RD3 Missense_Mutation p.R38L 0.52 deleterious(0) benign(0.313) TCGA-B1-7332-01 1 215953196 215953196 T C USH2A Missense_Mutation p.H3643R 0.44 probably_damaging(0.979) TCGA-B1-7332-01 1 220267643 220267643 T C IARS2 Missense_Mutation p.C29R 0.55 tolerated_low_confidence(0.58) benign(0.001) TCGA-B1-7332-01 1 22850847 22850847 C A ZBTB40 Silent p.T1145T 0.21 TCGA-B1-7332-01 1 35365842 35365842 G A DLGAP3 Silent p.T380T 0.36 TCGA-B1-7332-01 1 64603076 64603076 C A ROR1 Missense_Mutation p.F169L 0.41 tolerated(0.07) benign(0.314) TCGA-B1-7332-01 1 9656944 9656944 G A TMEM201 Missense_Mutation p.A88T 0.33 deleterious(0.03) probably_damaging(1) TCGA-B1-7332-01 20 25229042 25229042 C T PYGB Silent p.Y76Y 0.14 TCGA-B1-7332-01 20 60910168 60910168 G A LAMA5 Silent p.C797C 0.10 TCGA-B1-7332-01 21 47851808 47851808 G - PCNT Frame_Shift_Del p.V2811Cfs*29 0.17 TCGA-B1-7332-01 22 36123235 36123235 C T APOL5 Missense_Mutation p.P374S 0.40 tolerated_low_confidence(0.32) possibly_damaging(0.641) TCGA-B1-7332-01 22 50727529 50727529 A T PLXNB2 Missense_Mutation p.Y371N 0.19 tolerated(0.45) probably_damaging(0.991) TCGA-B1-7332-01 2 170058174 170058174 A G LRP2 Missense_Mutation p.C2806R 0.17 probably_damaging(1) TCGA-B1-7332-01 2 172691265 172691266 GC - SLC25A12 Frame_Shift_Del p.G241Dfs*6 0.12 TCGA-B1-7332-01 2 202900338 202900338 G A FZD7 Missense_Mutation p.G323D 0.19 tolerated(0.09) benign(0.053) TCGA-B1-7332-01 2 20402393 20402393 A T SDC1 3'UTR 0.25 TCGA-B1-7332-01 2 234580593 234580593 G - UGT1A9 Frame_Shift_Del p.W6Gfs*13 0.20 TCGA-B1-7332-01 2 238289848 238289848 A G COL6A3 Missense_Mutation p.L536P 0.15 probably_damaging(0.981) TCGA-B1-7332-01 3 150264542 150264542 T G EIF2A 5'UTR 0.18 TCGA-B1-7332-01 3 44986685 44986687 TGA - ZDHHC3 In_Frame_Del p.I135del 0.17 TCGA-B1-7332-01 3 49568799 49568799 A G DAG1 Silent p.A285A 0.42 TCGA-B1-7332-01 3 97661309 97661309 A G MINA 3'UTR 0.11 TCGA-B1-7332-01 4 146653660 146653660 C T C4orf51 Missense_Mutation p.A186V 0.44 tolerated(0.09) benign(0) TCGA-B1-7332-01 4 147561825 147561825 C T POU4F2 Silent p.A365A 0.32 TCGA-B1-7332-01 4 24543620 24543620 T - DHX15 Frame_Shift_Del p.E454Gfs*5 0.28 TCGA-B1-7332-01 5 31409241 31409241 T C DROSHA Missense_Mutation p.N1259S 0.61 deleterious(0.03) possibly_damaging(0.69) TCGA-B1-7332-01 5 89797779 89797779 A G POLR3G Missense_Mutation p.T138A 0.29 tolerated(0.6) benign(0.065) TCGA-B1-7332-01 6 110423180 110423180 G A WASF1 Missense_Mutation p.A378V 0.06 deleterious(0.01) unknown(0) TCGA-B1-7332-01 6 11735821 11735821 G A ADTRP Silent p.A180A 0.18 TCGA-B1-7332-01 7 116422117 116422117 T A MET Missense_Mutation p.F1218I 0.37 deleterious(0) probably_damaging(0.998) TCGA-B1-7332-01 7 135433461 135433461 T C FAM180A 5'UTR 0.14 TCGA-B1-7332-01 7 150498736 150498736 T C TMEM176A Missense_Mutation p.L33P 0.27 deleterious(0) probably_damaging(1) TCGA-B1-7332-01 7 27872553 27872553 T C JAZF1 Missense_Mutation p.T200A 0.07 tolerated(0.14) benign(0.016) TCGA-B1-7332-01 8 116631588 116631588 C T TRPS1 Missense_Mutation p.G246D 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-B1-7332-01 8 144941596 144941596 G A EPPK1 Silent p.D1942D 0.41 TCGA-B1-7332-01 8 25226181 25226181 C A DOCK5 Silent p.P1126P 0.38 TCGA-B1-7332-01 9 136208505 136208505 T C MED22 Silent p.E151E 0.16 TCGA-B1-7332-01 9 33048146 33048146 G C SMU1 Nonsense_Mutation p.Y467* 0.20 TCGA-B1-7332-01 X 138844142 138844142 A G ATP11C Missense_Mutation p.L876P 0.44 deleterious(0) probably_damaging(0.999) TCGA-B1-7332-01 X 41203029 41203029 G T DDX3X Missense_Mutation p.S240I 0.11 deleterious(0) probably_damaging(0.997) TCGA-B1-A47M-01 10 103552626 103552626 A G MGEA5 Silent p.Y715Y 0.37 TCGA-B1-A47M-01 10 112361757 112361757 T A SMC3 Missense_Mutation p.L976I 0.20 deleterious(0.02) possibly_damaging(0.774) TCGA-B1-A47M-01 10 119798692 119798692 C A RAB11FIP2 Missense_Mutation p.E352D 0.30 tolerated(0.22) benign(0.01) TCGA-B1-A47M-01 10 45500620 45500620 A G ZNF22 3'UTR 0.31 TCGA-B1-A47M-01 10 46282627 46282627 G C FAM21C Missense_Mutation p.G986R 0.25 tolerated(0.11) benign(0.003) TCGA-B1-A47M-01 10 51028290 51028292 ATA TT PARG Frame_Shift_Del p.Y414Nfs*9 0.22 TCGA-B1-A47M-01 10 70446307 70446307 G - TET1 Frame_Shift_Del p.Q1749Hfs*13 0.25 TCGA-B1-A47M-01 10 91344035 91344035 T G PANK1 3'UTR 0.43 TCGA-B1-A47M-01 11 117869943 117869943 G T IL10RA Missense_Mutation p.A442S 0.28 deleterious(0.05) benign(0.176) TCGA-B1-A47M-01 11 4674486 4674486 G A OR51E1 Missense_Mutation p.V244I 0.33 tolerated(0.31) benign(0.007) TCGA-B1-A47M-01 11 57466844 57466844 G A ZDHHC5 Missense_Mutation p.V646I 0.41 tolerated(0.75) benign(0.001) TCGA-B1-A47M-01 11 61957709 61957709 A C SCGB1D1 5'UTR 0.24 TCGA-B1-A47M-01 11 64789247 64789247 G A ARL2 Missense_Mutation p.A159T 0.43 deleterious(0.02) benign(0.265) TCGA-B1-A47M-01 12 57486863 57486863 C - NAB2 Frame_Shift_Del p.P388Lfs*46 0.26 TCGA-B1-A47M-01 13 112725834 112725834 C T SOX1 3'UTR 0.35 TCGA-B1-A47M-01 13 21950661 21950661 T C ZDHHC20 3'UTR 0.33 TCGA-B1-A47M-01 13 41381598 41381598 A - SLC25A15 Frame_Shift_Del p.G208Afs*5 0.31 TCGA-B1-A47M-01 13 99481633 99481633 G A DOCK9 Silent p.S1608S 0.30 TCGA-B1-A47M-01 14 100801160 100801160 T A WARS 3'UTR 0.20 TCGA-B1-A47M-01 14 102699995 102699995 C T MOK Intron 0.41 TCGA-B1-A47M-01 14 39871674 39871674 A G FBXO33 Missense_Mutation p.L214P 0.29 tolerated(0.06) benign(0.004) TCGA-B1-A47M-01 14 50713788 50713788 T C L2HGDH Silent p.R460R 0.37 TCGA-B1-A47M-01 14 70990728 70990729 CT - ADAM20 Frame_Shift_Del p.E299Gfs*2 0.20 TCGA-B1-A47M-01 14 74824279 74824279 T A VRTN Missense_Mutation p.S265T 0.36 tolerated(0.69) benign(0.016) TCGA-B1-A47M-01 14 88412007 88412007 A C GALC Missense_Mutation p.I520M 0.27 tolerated(0.23) benign(0.004) TCGA-B1-A47M-01 14 90870815 90870815 C T CALM1 Silent p.I126I 0.27 TCGA-B1-A47M-01 15 25981205 25981205 G A ATP10A Silent p.C246C 0.38 TCGA-B1-A47M-01 15 49293279 49293279 A C SECISBP2L Silent p.V681V 0.39 TCGA-B1-A47M-01 15 56686956 56686956 A - TEX9 Frame_Shift_Del p.K252Nfs*23 0.23 TCGA-B1-A47M-01 16 57283687 57283687 G T ARL2BP Missense_Mutation p.L72F 0.18 tolerated(0.06) probably_damaging(0.977) TCGA-B1-A47M-01 17 21320929 21320931 AGG - KCNJ12 3'UTR 0.40 TCGA-B1-A47M-01 17 33904481 33904481 A C PEX12 Missense_Mutation p.F86V 0.29 deleterious(0) probably_damaging(0.999) TCGA-B1-A47M-01 17 38447445 38447445 A G CDC6 Missense_Mutation p.K105R 0.11 tolerated(0.42) benign(0.004) TCGA-B1-A47M-01 17 42160014 42160014 G C HDAC5 Missense_Mutation p.A850G 0.27 deleterious(0.01) possibly_damaging(0.612) TCGA-B1-A47M-01 17 58288852 58288852 C A USP32 Missense_Mutation p.G735C 0.32 deleterious(0) probably_damaging(1) TCGA-B1-A47M-01 17 65739904 65739904 G A NOL11 Missense_Mutation p.E697K 0.22 deleterious(0) possibly_damaging(0.804) TCGA-B1-A47M-01 17 7256621 7256621 C T KCTD11 Silent p.D120D 0.27 TCGA-B1-A47M-01 17 76967786 76967786 T C LGALS3BP Missense_Mutation p.I544V 0.12 tolerated(0.28) benign(0.022) TCGA-B1-A47M-01 18 29178601 29178601 A G TTR Missense_Mutation p.Y136C 0.25 deleterious(0) probably_damaging(0.998) TCGA-B1-A47M-01 18 33558958 33558958 C G C18orf21 Missense_Mutation p.L218V 0.33 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-B1-A47M-01 18 72999468 72999468 C AA TSHZ1 Frame_Shift_Ins p.E660Gfs*24 0.27 TCGA-B1-A47M-01 19 19427332 19427332 C G SUGP1 Missense_Mutation p.Q35H 0.31 deleterious(0) probably_damaging(0.999) TCGA-B1-A47M-01 19 37210700 37210700 T A ZNF567 Silent p.T327T 0.39 TCGA-B1-A47M-01 19 37210701 37210701 C T ZNF567 Missense_Mutation p.H328Y 0.39 deleterious(0) probably_damaging(0.983) TCGA-B1-A47M-01 19 37904781 37904781 T C ZNF569 Missense_Mutation p.H260R 0.50 deleterious(0) probably_damaging(0.981) TCGA-B1-A47M-01 19 42461228 42461228 G T RABAC1 Silent p.G137G 0.38 TCGA-B1-A47M-01 19 49920441 49920441 G A CCDC155 Missense_Mutation p.A489T 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-B1-A47M-01 19 50285918 50285918 A G AP2A1 Missense_Mutation p.N137S 0.32 deleterious(0.02) benign(0.332) TCGA-B1-A47M-01 19 52887363 52887363 C T ZNF880 Missense_Mutation p.A177V 0.25 tolerated(0.96) benign(0.009) TCGA-B1-A47M-01 1 117078689 117078689 T C CD58 Missense_Mutation p.K176E 0.32 tolerated(0.37) possibly_damaging(0.813) TCGA-B1-A47M-01 1 151381040 151381040 G A POGZ Silent p.S693S 0.33 TCGA-B1-A47M-01 1 156268771 156268771 C T VHLL Nonsense_Mutation p.W70* 0.27 TCGA-B1-A47M-01 1 161009697 161009697 T G USF1 3'UTR 0.24 TCGA-B1-A47M-01 1 197237545 197237545 G T CRB1 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0.04) benign(0.002) TCGA-B1-A47M-01 1 202866048 202866048 G A KLHL12 Silent p.S291S 0.41 TCGA-B1-A47M-01 1 207271520 207271520 C A C4BPB Missense_Mutation p.Q177K 0.33 tolerated(0.07) possibly_damaging(0.577) TCGA-B1-A47M-01 1 213251150 213251150 T C RPS6KC1 Missense_Mutation p.I85T 0.49 tolerated(0.21) benign(0.044) TCGA-B1-A47M-01 1 223286361 223286361 G A TLR5 Silent p.L5L 0.37 TCGA-B1-A47M-01 1 38042060 38042060 C T GNL2 Missense_Mutation p.C336Y 0.33 deleterious(0) probably_damaging(0.986) TCGA-B1-A47M-01 1 38397488 38397488 G A INPP5B Intron 0.27 TCGA-B1-A47M-01 1 53995548 53995548 C T GLIS1 Silent p.P291P 0.51 TCGA-B1-A47M-01 1 8074134 8074135 AG - ERRFI1 Frame_Shift_Del p.T175Kfs*15 0.26 TCGA-B1-A47M-01 1 84768963 84768963 G T SAMD13 Missense_Mutation p.V30L 0.40 tolerated(0.31) benign(0.085) TCGA-B1-A47M-01 20 10639160 10639160 T G JAG1 Missense_Mutation p.N217T 0.42 deleterious(0.03) probably_damaging(0.995) TCGA-B1-A47M-01 20 56098141 56098141 T - CTCFL Frame_Shift_Del p.N246Ifs*31 0.26 TCGA-B1-A47M-01 20 60908164 60908164 G A LAMA5 Silent p.I1088I 0.53 TCGA-B1-A47M-01 20 62851117 62851117 A G MYT1 Missense_Mutation p.K675E 0.38 possibly_damaging(0.852) TCGA-B1-A47M-01 20 62871879 62871879 C A MYT1 3'UTR 0.29 TCGA-B1-A47M-01 21 38884349 38884349 G A DYRK1A Missense_Mutation p.G603S 0.36 tolerated_low_confidence(0.22) possibly_damaging(0.855) TCGA-B1-A47M-01 22 24175838 24175839 - TT SMARCB1 Frame_Shift_Ins p.T357* 0.23 TCGA-B1-A47M-01 22 30038228 30038228 C A NF2 Missense_Mutation p.P134H 0.38 deleterious(0) possibly_damaging(0.796) TCGA-B1-A47M-01 22 30038229 30038229 T C NF2 Silent p.P134P 0.39 TCGA-B1-A47M-01 2 102805602 102805602 G A IL1RL2 Missense_Mutation p.C42Y 0.34 deleterious(0.02) possibly_damaging(0.774) TCGA-B1-A47M-01 2 12858616 12858616 C A TRIB2 Silent p.I61I 0.40 TCGA-B1-A47M-01 2 136393707 136393707 G T R3HDM1 Missense_Mutation p.R286I 0.30 deleterious(0) probably_damaging(0.985) TCGA-B1-A47M-01 2 166848746 166848746 A T SCN1A Missense_Mutation p.V1680D 0.33 deleterious(0) probably_damaging(0.998) TCGA-B1-A47M-01 2 178098806 178098806 G T NFE2L2 Missense_Mutation p.T80K 0.31 deleterious(0) probably_damaging(1) TCGA-B1-A47M-01 2 191066096 191066096 A T C2orf88 3'UTR 0.31 TCGA-B1-A47M-01 2 203560690 203560690 G - FAM117B Frame_Shift_Del p.A230Lfs*16 0.23 TCGA-B1-A47M-01 2 220404816 220404816 A T CHPF Silent p.A539A 0.50 TCGA-B1-A47M-01 2 238259816 238259816 C G COL6A3 Missense_Mutation p.G2258A 0.32 unknown(0) TCGA-B1-A47M-01 2 239093869 239093869 A G ILKAP Missense_Mutation p.F162S 0.27 deleterious(0) probably_damaging(0.949) TCGA-B1-A47M-01 2 74641431 74641431 G A C2orf81 3'UTR 0.36 TCGA-B1-A47M-01 2 90154249 90154249 T G IGKV3D-15 Missense_Mutation p.N112K 0.33 tolerated(0.26) benign(0.002) TCGA-B1-A47M-01 3 101284214 101284214 C T TRMT10C Nonsense_Mutation p.Q197* 0.30 TCGA-B1-A47M-01 3 113684200 113684200 G A KIAA1407 Silent p.I871I 0.20 TCGA-B1-A47M-01 3 197592302 197592302 C G LRCH3 Missense_Mutation p.D575E 0.27 tolerated(0.32) benign(0.012) TCGA-B1-A47M-01 3 37034787 37034787 C A EPM2AIP1 5'UTR 0.36 TCGA-B1-A47M-01 3 43744053 43744053 T C ABHD5 Silent p.A160A 0.24 TCGA-B1-A47M-01 4 100057629 100057629 G T ADH4 Silent p.I190I 0.31 TCGA-B1-A47M-01 4 123109188 123109188 A T KIAA1109 Missense_Mutation p.N256Y 0.32 probably_damaging(0.998) TCGA-B1-A47M-01 4 144457751 144457751 A C SMARCA5 Missense_Mutation p.Y472S 0.38 deleterious(0) benign(0.313) TCGA-B1-A47M-01 4 187093141 187093141 A T FAM149A Nonstop_Mutation p.*483Cext*33 0.09 TCGA-B1-A47M-01 4 44450334 44450334 A T KCTD8 Silent p.T69T 0.43 TCGA-B1-A47M-01 4 88053423 88053423 C T AFF1 Silent p.C1058C 0.31 TCGA-B1-A47M-01 5 118183873 118183873 C T DTWD2 Missense_Mutation p.R213Q 0.30 deleterious(0) probably_damaging(1) TCGA-B1-A47M-01 5 137346798 137346798 C G FAM13B Missense_Mutation p.V197L 0.48 deleterious(0.05) benign(0.298) TCGA-B1-A47M-01 5 140572491 140572494 AGTC - PCDHB10 Frame_Shift_Del p.V123Gfs*3 0.27 TCGA-B1-A47M-01 5 141316790 141316790 A C KIAA0141 Missense_Mutation p.I393L 0.29 deleterious(0.05) possibly_damaging(0.669) TCGA-B1-A47M-01 5 156590131 156590131 G A FAM71B Missense_Mutation p.T382I 0.22 deleterious(0) benign(0.214) TCGA-B1-A47M-01 5 178030682 178030683 - T CLK4 Frame_Shift_Ins p.T461Nfs*8 0.32 TCGA-B1-A47M-01 5 31294229 31294229 C A CDH6 Missense_Mutation p.A130D 0.30 deleterious(0) probably_damaging(1) TCGA-B1-A47M-01 6 116441541 116441541 G T COL10A1 Missense_Mutation p.Q580K 0.25 deleterious(0.04) benign(0.113) TCGA-B1-A47M-01 6 15512476 15512476 T C JARID2 Missense_Mutation p.V997A 0.30 deleterious(0) probably_damaging(0.995) TCGA-B1-A47M-01 6 26458834 26458834 G A BTN2A1 Splice_Site 0.32 TCGA-B1-A47M-01 6 31852466 31852467 GG A EHMT2 Frame_Shift_Del p.T853Ifs*38 0.35 TCGA-B1-A47M-01 6 36294405 36294405 G C C6orf222 Silent p.S306S 0.34 TCGA-B1-A47M-01 6 43184050 43184050 T C CUL9 Missense_Mutation p.S2031P 0.32 deleterious(0.01) benign(0.124) TCGA-B1-A47M-01 7 121769482 121769482 G A AASS Missense_Mutation p.A107V 0.37 tolerated(0.47) probably_damaging(0.954) TCGA-B1-A47M-01 7 143421829 143421829 C T FAM115C 3'UTR 0.11 TCGA-B1-A47M-01 7 158828654 158828654 T C VIPR2 Silent p.L266L 0.47 TCGA-B1-A47M-01 7 99219063 99219063 T A ZSCAN25 Missense_Mutation p.I152N 0.40 deleterious(0) benign(0.029) TCGA-B1-A47M-01 8 124989660 124989660 C T FER1L6 Nonsense_Mutation p.R292* 0.37 TCGA-B1-A47M-01 8 16021617 16021617 A G MSR1 Silent p.D258D 0.29 TCGA-B1-A47M-01 8 72182014 72182014 G A EYA1 Silent p.H337H 0.30 TCGA-B1-A47M-01 9 100227199 100227199 T G TDRD7 Silent p.P506P 0.22 TCGA-B1-A47M-01 9 111761412 111761412 A C CTNNAL1 Missense_Mutation p.I89R 0.29 deleterious(0) probably_damaging(1) TCGA-B1-A47M-01 9 111761413 111761413 T C CTNNAL1 Missense_Mutation p.I89V 0.29 deleterious(0) probably_damaging(0.997) TCGA-B1-A47M-01 9 125673886 125673886 T C ZBTB6 Missense_Mutation p.N156D 0.26 tolerated(0.63) benign(0.01) TCGA-B1-A47M-01 9 131250301 131250301 G - ODF2 Frame_Shift_Del p.K512Rfs*21 0.21 TCGA-B1-A47M-01 9 140110791 140110791 C G NDOR1 Missense_Mutation p.L582V 0.24 tolerated(0.08) benign(0.347) TCGA-B1-A47M-01 9 21481036 21481036 C T IFNE 3'UTR 0.51 TCGA-B1-A47M-01 9 79325026 79325026 G A PRUNE2 Nonsense_Mutation p.Q722* 0.51 TCGA-B1-A47M-01 9 96079890 96079890 C T WNK2 Missense_Mutation p.P2239L 0.31 unknown(0) TCGA-B1-A47M-01 X 48762075 48762075 G A SLC35A2 Missense_Mutation p.P371S 0.62 tolerated_low_confidence(0.15) possibly_damaging(0.857) TCGA-B1-A47M-01 X 78011381 78011381 C T LPAR4 Missense_Mutation p.P339S 0.72 tolerated_low_confidence(0.33) benign(0.001) TCGA-B1-A47N-01 10 24873803 24873803 T C ARHGAP21 Silent p.G1805G 0.36 TCGA-B1-A47N-01 11 46702650 46702650 G A ARHGAP1 Silent p.F182F 0.08 TCGA-B1-A47N-01 11 62296065 62296065 C T AHNAK Missense_Mutation p.V1942M 0.07 possibly_damaging(0.781) TCGA-B1-A47N-01 11 66636384 66636384 T C PC Missense_Mutation p.K319E 0.35 tolerated(0.32) benign(0.034) TCGA-B1-A47N-01 12 123071288 123071288 C - KNTC1 Frame_Shift_Del p.C1239Afs*14 0.11 TCGA-B1-A47N-01 12 132834320 132834320 G A GALNT9 Silent p.N289N 0.25 TCGA-B1-A47N-01 12 306024 306024 A G SLC6A12 Missense_Mutation p.F367S 0.27 deleterious(0) possibly_damaging(0.88) TCGA-B1-A47N-01 12 52201225 52201225 A G SCN8A 3'UTR 0.40 TCGA-B1-A47N-01 12 56490144 56490144 C A ERBB3 Intron 0.33 TCGA-B1-A47N-01 13 27332981 27332981 C T GPR12 Silent p.A328A 0.45 TCGA-B1-A47N-01 13 32823745 32823745 G T FRY Missense_Mutation p.R2364L 0.04 tolerated(0.07) probably_damaging(0.932) TCGA-B1-A47N-01 13 39600511 39600511 C T PROSER1 Missense_Mutation p.G128D 0.33 deleterious(0) probably_damaging(0.999) TCGA-B1-A47N-01 14 45564665 45564665 G A PRPF39 Missense_Mutation p.A75T 0.40 tolerated(0.58) benign(0.037) TCGA-B1-A47N-01 15 40588729 40588729 C T PLCB2 Silent p.S531S 0.43 TCGA-B1-A47N-01 15 75673957 75673957 T A SIN3A Silent p.A1095A 0.45 TCGA-B1-A47N-01 15 75673982 75673982 T A SIN3A Missense_Mutation p.E1087V 0.44 tolerated(0.07) possibly_damaging(0.741) TCGA-B1-A47N-01 16 74750468 74750468 G C FA2H Missense_Mutation p.F272L 0.39 deleterious(0) probably_damaging(0.954) TCGA-B1-A47N-01 16 778934 778934 G C HAGHL Intron 0.79 TCGA-B1-A47N-01 17 1630052 1630052 C T WDR81 Missense_Mutation p.P600L 0.58 tolerated(0.05) possibly_damaging(0.487) TCGA-B1-A47N-01 17 4445767 4445767 G T MYBBP1A Missense_Mutation p.R1027S 0.31 deleterious(0.02) possibly_damaging(0.82) TCGA-B1-A47N-01 19 422299 422299 G T SHC2 Missense_Mutation p.H489Q 0.12 tolerated(0.4) probably_damaging(0.993) TCGA-B1-A47N-01 19 52877551 52877551 G A ZNF880 Splice_Site p.X47_splice 0.09 TCGA-B1-A47N-01 1 110950347 110950347 C - LAMTOR5 Frame_Shift_Del p.A48Rfs*12 0.22 TCGA-B1-A47N-01 1 150131515 150131515 C A PLEKHO1 Missense_Mutation p.P343T 0.14 tolerated(0.14) benign(0.437) TCGA-B1-A47N-01 1 63119731 63119731 A G DOCK7 Missense_Mutation p.F82L 0.35 deleterious(0.01) possibly_damaging(0.447) TCGA-B1-A47N-01 2 176996164 176996165 - CCCTAGCCCT HOXD8 Frame_Shift_Ins p.T237Pfs*107 0.21 TCGA-B1-A47N-01 2 197750195 197750195 G T PGAP1 Missense_Mutation p.Q409K 0.06 tolerated(0.08) benign(0.165) TCGA-B1-A47N-01 2 220465972 220465972 C T STK11IP Missense_Mutation p.S37F 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-B1-A47N-01 2 47382353 47382353 A G C2orf61 Missense_Mutation p.I13T 0.29 tolerated_low_confidence(0.07) benign(0.01) TCGA-B1-A47N-01 2 95847510 95847510 C G ZNF2 Missense_Mutation p.P313A 0.33 deleterious(0) probably_damaging(0.92) TCGA-B1-A47N-01 3 188925189 188925189 A G TPRG1 Missense_Mutation p.S6G 0.15 deleterious_low_confidence(0.01) benign(0.119) TCGA-B1-A47N-01 3 195490958 195490958 G A MUC4 Missense_Mutation p.R4668W 0.04 probably_damaging(0.965) TCGA-B1-A47N-01 4 156784757 156784757 G A ASIC5 Missense_Mutation p.L64F 0.37 tolerated(0.17) benign(0.02) TCGA-B1-A47N-01 4 184241521 184241521 A C CLDN22 5'UTR 0.49 TCGA-B1-A47N-01 6 161026202 161026202 A G LPA Missense_Mutation p.Y941H 0.56 deleterious(0.02) probably_damaging(0.999) TCGA-B1-A47N-01 6 33400480 33400480 C T SYNGAP1 Missense_Mutation p.R136W 0.32 deleterious(0) possibly_damaging(0.694) TCGA-B1-A47N-01 7 27856559 27856559 A T TAX1BP1 Nonsense_Mutation p.R663* 0.60 TCGA-B1-A47N-01 8 1954726 1954726 C T KBTBD11 3'UTR 0.05 TCGA-B1-A47N-01 8 61775123 61775123 C T CHD7 Missense_Mutation p.A2663V 0.05 probably_damaging(0.993) TCGA-B1-A47N-01 9 133948708 133948708 G A LAMC3 Missense_Mutation p.S1165N 0.40 deleterious(0.01) possibly_damaging(0.881) TCGA-B1-A47N-01 9 19050975 19050975 T A RRAGA 3'UTR 0.31 TCGA-B1-A47N-01 X 53114044 53114044 C A TSPYL2 Silent p.R331R 0.93 TCGA-B1-A47O-01 10 3143674 3143674 G A PFKP Missense_Mutation p.D128N 0.14 deleterious(0) benign(0.242) TCGA-B1-A47O-01 10 55581933 55581933 G A PCDH15 Silent p.N1853N 0.04 TCGA-B1-A47O-01 12 112605266 112605266 C T HECTD4 Missense_Mutation p.G3984E 0.26 probably_damaging(0.999) TCGA-B1-A47O-01 12 129180556 129180556 G A TMEM132C Missense_Mutation p.A613T 0.25 tolerated(0.68) benign(0.008) TCGA-B1-A47O-01 12 1372211 1372211 T A ERC1 Silent p.R833R 0.19 TCGA-B1-A47O-01 12 49259443 49259443 A G RND1 Silent p.D36D 0.09 TCGA-B1-A47O-01 12 51757995 51757995 C G GALNT6 Missense_Mutation p.R320P 0.21 deleterious(0.04) probably_damaging(1) TCGA-B1-A47O-01 12 53663722 53663722 A T ESPL1 Silent p.P332P 0.25 TCGA-B1-A47O-01 13 29675028 29675028 C T MTUS2 Silent p.V865V 0.25 TCGA-B1-A47O-01 13 88331009 88331009 T A SLITRK5 3'UTR 0.12 TCGA-B1-A47O-01 14 44974383 44974383 G A FSCB Missense_Mutation p.A603V 0.19 tolerated(0.23) possibly_damaging(0.682) TCGA-B1-A47O-01 15 64702014 64702014 G C TRIP4 Missense_Mutation p.E344Q 0.30 tolerated(0.07) possibly_damaging(0.501) TCGA-B1-A47O-01 17 27379969 27379969 G C PIPOX Missense_Mutation p.E99Q 0.13 tolerated(0.3) benign(0.198) TCGA-B1-A47O-01 17 72589019 72589019 C T C17orf77 3'UTR 0.14 TCGA-B1-A47O-01 17 7734797 7734797 C G DNAH2 Silent p.S4183S 0.24 TCGA-B1-A47O-01 18 580595 580595 G A CETN1 Missense_Mutation p.E63K 0.29 deleterious(0) probably_damaging(0.932) TCGA-B1-A47O-01 19 39879309 39879309 T C PAF1 Missense_Mutation p.M250V 0.18 tolerated(0.32) benign(0.124) TCGA-B1-A47O-01 19 41063170 41063170 G A SPTBN4 Missense_Mutation p.R1844Q 0.19 deleterious(0.02) possibly_damaging(0.577) TCGA-B1-A47O-01 1 154680665 154680665 C T KCNN3 Silent p.S661S 0.26 TCGA-B1-A47O-01 1 155262969 155262969 G A PKLR Missense_Mutation p.R479C 0.24 deleterious(0) probably_damaging(0.927) TCGA-B1-A47O-01 1 207642240 207642240 G A CR2 Missense_Mutation p.E244K 0.07 tolerated(0.17) benign(0.041) TCGA-B1-A47O-01 1 22902757 22902757 G A EPHA8 Silent p.T69T 0.20 TCGA-B1-A47O-01 1 24981475 24981475 T C SRRM1 Silent p.P390P 0.22 TCGA-B1-A47O-01 1 3607445 3607445 G A TP73 Intron 0.30 TCGA-B1-A47O-01 1 44778900 44778900 G A ERI3 Missense_Mutation p.L203F 0.26 deleterious(0) probably_damaging(1) TCGA-B1-A47O-01 20 32856797 32856797 A G ASIP Missense_Mutation p.K75E 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-B1-A47O-01 2 109003803 109003804 - CA SULT1C4 Frame_Shift_Ins p.V277Pfs*16 0.16 TCGA-B1-A47O-01 2 166246020 166246020 C T SCN2A Missense_Mutation p.R1902C 0.19 deleterious(0) probably_damaging(0.999) TCGA-B1-A47O-01 2 170003429 170003429 C T LRP2 Missense_Mutation p.E4211K 0.20 probably_damaging(1) TCGA-B1-A47O-01 2 179473456 179473456 A T TTN Missense_Mutation p.C17428S 0.24 TCGA-B1-A47O-01 3 93845254 93845254 G T NSUN3 Missense_Mutation p.V315L 0.12 deleterious(0) probably_damaging(0.996) TCGA-B1-A47O-01 5 176831349 176831349 T C F12 Missense_Mutation p.Y289C 0.15 deleterious(0) probably_damaging(0.998) TCGA-B1-A47O-01 6 108533371 108533371 A C SNX3 Silent p.S157S 0.18 TCGA-B1-A47O-01 6 161071428 161071428 C T LPA Missense_Mutation p.A51T 0.21 tolerated(0.54) probably_damaging(0.937) TCGA-B1-A47O-01 7 2645529 2645529 T C IQCE Missense_Mutation p.V588A 0.20 tolerated(0.1) benign(0.013) TCGA-B1-A47O-01 7 75050987 75050987 C A POM121C Missense_Mutation p.G850W 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-B1-A47O-01 7 82544315 82544315 A G PCLO Silent p.S4329S 0.27 TCGA-B1-A47O-01 8 9953504 9953504 C T MSRA Intron 0.12 TCGA-B1-A47O-01 9 32571048 32571048 G T NDUFB6 Silent p.V61V 0.21 TCGA-B1-A47O-01 9 91964729 91964729 G A SECISBP2 Missense_Mutation p.V593I 0.18 tolerated(0.28) benign(0.006) TCGA-B1-A47O-01 X 30237276 30237276 C G MAGEB2 Silent p.L193L 0.23 TCGA-B1-A47O-01 X 54957701 54957701 T C TRO 3'UTR 0.11 TCGA-B1-A654-01 10 60936661 60936661 C A PHYHIPL Silent p.P16P 0.33 TCGA-B1-A654-01 10 89725343 89725343 G A PTEN 3'UTR 0.06 TCGA-B1-A654-01 11 118938495 118938495 C A VPS11 5'UTR 0.44 TCGA-B1-A654-01 11 15197495 15197495 C A INSC Missense_Mutation p.R136S 0.45 tolerated(0.92) benign(0.024) TCGA-B1-A654-01 11 64089246 64089246 G T PRDX5 3'UTR 0.09 TCGA-B1-A654-01 11 66204727 66204727 C G MRPL11 Missense_Mutation p.E107D 0.51 tolerated(0.07) probably_damaging(0.971) TCGA-B1-A654-01 11 67410051 67410051 A G ACY3 3'UTR 0.36 TCGA-B1-A654-01 11 68518126 68518126 C A MTL5 Translation_Start_Site p.M1? 0.52 deleterious_low_confidence(0) unknown(0) TCGA-B1-A654-01 11 73007583 73007583 C A P2RY6 Missense_Mutation p.T7K 0.39 deleterious(0.02) possibly_damaging(0.738) TCGA-B1-A654-01 12 100731225 100731225 C T SCYL2 Silent p.L696L 0.50 TCGA-B1-A654-01 12 101799660 101799660 T C ARL1 Missense_Mutation p.Y35C 0.47 deleterious(0.01) possibly_damaging(0.587) TCGA-B1-A654-01 12 104345076 104345076 T C C12orf73 3'UTR 0.38 TCGA-B1-A654-01 12 109490532 109490532 A T USP30 Missense_Mutation p.I17F 0.47 deleterious_low_confidence(0.01) benign(0.046) TCGA-B1-A654-01 12 4796296 4796296 T - NDUFA9 3'UTR 0.27 TCGA-B1-A654-01 12 64377795 64377795 C T SRGAP1 Missense_Mutation p.L46F 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-B1-A654-01 13 32972588 32972588 A C BRCA2 Missense_Mutation p.K3313T 0.42 deleterious(0) probably_damaging(0.953) TCGA-B1-A654-01 13 80911824 80911824 T C SPRY2 Missense_Mutation p.Q6R 0.52 deleterious(0) probably_damaging(0.932) TCGA-B1-A654-01 14 102548766 102548766 G A HSP90AA1 Nonsense_Mutation p.R713* 0.44 TCGA-B1-A654-01 14 102675840 102675840 A G WDR20 Missense_Mutation p.S476G 0.42 tolerated(0.7) benign(0.003) TCGA-B1-A654-01 14 93408247 93408247 A T ITPK1 Missense_Mutation p.Y302N 0.54 deleterious(0) probably_damaging(1) TCGA-B1-A654-01 15 69548696 69548696 T C GLCE Missense_Mutation p.V184A 0.32 tolerated(0.25) benign(0.012) TCGA-B1-A654-01 15 72190184 72190184 C G MYO9A Missense_Mutation p.V1554L 0.45 tolerated_low_confidence(0.31) benign(0.001) TCGA-B1-A654-01 15 72698982 72698982 T A TMEM202 Missense_Mutation p.V126D 0.47 deleterious(0.04) possibly_damaging(0.466) TCGA-B1-A654-01 15 75309011 75309011 G T SCAMP5 Missense_Mutation p.G72C 0.45 deleterious(0) probably_damaging(1) TCGA-B1-A654-01 16 2014483 2014484 - CGGCCT RPS2 In_Frame_Ins p.R48_G49dup 0.38 TCGA-B1-A654-01 16 31414858 31414858 A C ITGAD Missense_Mutation p.H199P 0.48 deleterious(0) probably_damaging(0.99) TCGA-B1-A654-01 16 67976796 67976796 G T LCAT Missense_Mutation p.S132Y 0.40 deleterious(0) possibly_damaging(0.886) TCGA-B1-A654-01 16 69458736 69458736 C T CYB5B Silent p.Y50Y 0.05 TCGA-B1-A654-01 17 40734802 40734802 C A FAM134C Missense_Mutation p.R278M 0.30 deleterious(0.04) possibly_damaging(0.787) TCGA-B1-A654-01 17 48221032 48221032 A G PPP1R9B Missense_Mutation p.M517T 0.60 tolerated(0.32) benign(0.103) TCGA-B1-A654-01 17 62502385 62502385 A T DDX5 5'UTR 0.47 TCGA-B1-A654-01 17 72781730 72781730 T A TMEM104 Missense_Mutation p.L52Q 0.58 deleterious(0) probably_damaging(0.969) TCGA-B1-A654-01 18 11852649 11852649 T C CHMP1B 3'UTR 0.45 TCGA-B1-A654-01 18 54814657 54814657 C T BOD1L2 Silent p.L38L 0.45 TCGA-B1-A654-01 19 16757936 16757936 G - SMIM7 3'UTR 0.33 TCGA-B1-A654-01 19 57133380 57133380 A T ZNF71 Missense_Mutation p.Y242F 0.41 tolerated(0.17) benign(0.01) TCGA-B1-A654-01 19 6165945 6165945 G - ACSBG2 Frame_Shift_Del p.K220Rfs*21 0.24 TCGA-B1-A654-01 19 6312214 6312214 C T ACER1 Missense_Mutation p.G99D 0.37 deleterious(0) possibly_damaging(0.47) TCGA-B1-A654-01 1 100676255 100676255 A G DBT Missense_Mutation p.Y338H 0.46 tolerated(0.06) benign(0.183) TCGA-B1-A654-01 1 120927211 120927212 GC - FCGR1B Frame_Shift_Del p.E256Dfs*45 0.13 TCGA-B1-A654-01 1 153926765 153926765 A G CRTC2 Missense_Mutation p.Y134H 0.33 deleterious(0.04) probably_damaging(0.998) TCGA-B1-A654-01 1 154184703 154184703 T A C1orf43 Intron 0.59 TCGA-B1-A654-01 1 186355194 186355194 T C C1orf27 Silent p.D103D 0.42 TCGA-B1-A654-01 1 226253741 226253741 T C H3F3A Intron 0.53 TCGA-B1-A654-01 1 38005993 38005993 C G SNIP1 Missense_Mutation p.A231P 0.54 deleterious(0.01) probably_damaging(0.973) TCGA-B1-A654-01 20 3804962 3804963 - CTT AP5S1 3'UTR 0.57 TCGA-B1-A654-01 21 45750162 45750162 C A C21orf2 Missense_Mutation p.E349D 0.44 deleterious(0.01) possibly_damaging(0.636) TCGA-B1-A654-01 22 28192976 28192976 C T MN1 Missense_Mutation p.A1186T 0.44 benign(0.035) TCGA-B1-A654-01 22 41924098 41924098 C A POLR3H 3'UTR 0.46 TCGA-B1-A654-01 2 128051097 128051097 G T ERCC3 Missense_Mutation p.L76I 0.37 tolerated(0.21) possibly_damaging(0.67) TCGA-B1-A654-01 2 128522273 128522273 G A WDR33 Intron 0.48 TCGA-B1-A654-01 2 182780851 182780851 T C SSFA2 Silent p.T828T 0.45 TCGA-B1-A654-01 2 25180723 25180723 G T DNAJC27 Missense_Mutation p.H121N 0.42 tolerated(0.47) benign(0.005) TCGA-B1-A654-01 2 44547379 44547379 A G SLC3A1 Silent p.Q553Q 0.35 TCGA-B1-A654-01 3 167189524 167189527 AAGA T SERPINI2 In_Frame_Del p.D32_L33delinsE 0.47 TCGA-B1-A654-01 3 189612036 189612036 G C TP63 Silent p.A596A 0.41 TCGA-B1-A654-01 3 383612 383612 C A CHL1 Missense_Mutation p.Q176K 0.48 deleterious(0) probably_damaging(0.998) TCGA-B1-A654-01 3 46000087 46000087 G C FYCO1 Nonsense_Mutation p.Y1204* 0.54 TCGA-B1-A654-01 3 48699894 48699894 G A CELSR3 Silent p.G58G 0.48 TCGA-B1-A654-01 3 69230503 69230503 G A FRMD4B Missense_Mutation p.P800S 0.06 deleterious(0.05) benign(0.022) TCGA-B1-A654-01 4 2930230 2930232 AAG - ADD1 In_Frame_Del p.K765del 0.40 TCGA-B1-A654-01 4 7783233 7783233 G T AFAP1 Missense_Mutation p.P551H 0.37 deleterious(0.01) benign(0.375) TCGA-B1-A654-01 5 10992734 10992734 C T CTNND2 Missense_Mutation p.R1047Q 0.51 deleterious(0.05) possibly_damaging(0.534) TCGA-B1-A654-01 5 120021847 120021847 C T PRR16 Missense_Mutation p.P97S 0.05 tolerated_low_confidence(0.18) probably_damaging(0.999) TCGA-B1-A654-01 5 140870632 140870633 - T PCDHGC5 Frame_Shift_Ins p.L610Vfs*18 0.35 TCGA-B1-A654-01 5 145547749 145547751 TCC - LARS In_Frame_Del p.E126del 0.35 TCGA-B1-A654-01 6 13228185 13228185 A G PHACTR1 Missense_Mutation p.N375S 0.47 deleterious(0.01) benign(0.088) TCGA-B1-A654-01 6 152453307 152453307 C A SYNE1 Missense_Mutation p.G8682W 0.40 probably_damaging(0.994) TCGA-B1-A654-01 6 168377288 168377288 T C RP3-470B24.5 RNA 0.33 TCGA-B1-A654-01 6 3137663 3137663 C T BPHL Silent p.D200D 0.40 TCGA-B1-A654-01 7 116423413 116423413 T C MET Missense_Mutation p.Y1248H 0.59 deleterious(0) probably_damaging(0.999) TCGA-B1-A654-01 7 124503439 124503439 T C POT1 Missense_Mutation p.K171E 0.28 deleterious(0) possibly_damaging(0.48) TCGA-B1-A654-01 7 151884405 151884405 A T KMT2C Silent p.T1650T 0.27 TCGA-B1-A654-01 7 24784199 24784199 A T DFNA5 Missense_Mutation p.I129N 0.19 deleterious(0) probably_damaging(0.958) TCGA-B1-A654-01 7 27203455 27203455 G T HOXA9 Missense_Mutation p.P196T 0.25 deleterious(0) probably_damaging(0.992) TCGA-B1-A654-01 7 43490498 43490498 T C HECW1 Missense_Mutation p.Y824H 0.56 deleterious(0.01) possibly_damaging(0.593) TCGA-B1-A654-01 7 75615290 75615290 T C POR Silent p.D573D 0.20 TCGA-B1-A654-01 7 99022430 99022430 G A ATP5J2-PTCD1 Silent p.L624L 0.29 TCGA-B1-A654-01 8 110488892 110488892 C G PKHD1L1 Nonsense_Mutation p.Y2971* 0.40 TCGA-B1-A654-01 8 11705226 11705226 G T CTSB Missense_Mutation p.P213H 0.45 tolerated(0.09) possibly_damaging(0.585) TCGA-B1-A654-01 8 86027335 86027335 G A LRRCC1 Missense_Mutation p.G182E 0.44 deleterious(0.01) possibly_damaging(0.566) TCGA-B1-A654-01 8 88885869 88885869 C G DCAF4L2 Missense_Mutation p.E111Q 0.36 tolerated(0.05) benign(0.09) TCGA-B1-A654-01 9 6814817 6814817 T C KDM4C Intron 0.08 TCGA-B1-A654-01 X 118715383 118715383 T G UBE2A Intron 0.50 TCGA-B1-A654-01 X 129546641 129546641 A T RBMX2 Missense_Mutation p.K263M 0.46 deleterious(0.01) probably_damaging(0.935) TCGA-B1-A654-01 X 38664368 38664368 G T MID1IP1 Missense_Mutation p.G57C 0.47 tolerated_low_confidence(0.06) possibly_damaging(0.665) TCGA-B1-A654-01 X 96139635 96139635 G A RPA4 Missense_Mutation p.G109D 0.52 tolerated(0.72) benign(0.025) TCGA-B1-A655-01 10 101935785 101935785 G C ERLIN1 Missense_Mutation p.T116S 0.36 tolerated(0.08) benign(0.314) TCGA-B1-A655-01 10 128830577 128830577 T A DOCK1 Silent p.T614T 0.38 TCGA-B1-A655-01 10 134733640 134733640 C T TTC40 Silent p.K551K 0.29 TCGA-B1-A655-01 10 35896876 35896876 C A GJD4 Silent p.I145I 0.33 TCGA-B1-A655-01 10 72513573 72513573 G T ADAMTS14 Missense_Mutation p.W919L 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-B1-A655-01 10 77818509 77818509 A G C10orf11 Missense_Mutation p.R134G 0.15 deleterious(0.01) benign(0.135) TCGA-B1-A655-01 10 98744160 98744160 A C C10orf12 Missense_Mutation p.N1005H 0.33 deleterious(0) probably_damaging(0.994) TCGA-B1-A655-01 11 33374883 33374883 T C HIPK3 Silent p.S1139S 0.28 TCGA-B1-A655-01 11 46666907 46666907 C T ATG13 Nonsense_Mutation p.Q30* 0.05 TCGA-B1-A655-01 11 49598199 49598199 C T RP11-707M1.1 RNA 0.31 TCGA-B1-A655-01 11 61067594 61067594 C - DDB1 3'UTR 0.13 TCGA-B1-A655-01 11 65397996 65397996 A C PCNXL3 Missense_Mutation p.Y1464S 0.33 deleterious(0) probably_damaging(0.993) TCGA-B1-A655-01 11 94225958 94225958 C A MRE11A Missense_Mutation p.A4S 0.10 tolerated_low_confidence(0.48) benign(0.001) TCGA-B1-A655-01 12 48543736 48543736 C T ASB8 Missense_Mutation p.A94T 0.32 tolerated(0.05) probably_damaging(0.986) TCGA-B1-A655-01 12 51758036 51758036 A - GALNT6 Frame_Shift_Del p.F306Lfs*22 0.24 TCGA-B1-A655-01 14 32560648 32560648 A - ARHGAP5 Frame_Shift_Del p.Y258Ffs*26 0.33 TCGA-B1-A655-01 14 72939649 72939649 C - RGS6 Frame_Shift_Del p.H203Tfs*8 0.33 TCGA-B1-A655-01 14 93760330 93760330 G T BTBD7 Missense_Mutation p.P346T 0.05 tolerated(0.13) probably_damaging(0.932) TCGA-B1-A655-01 14 94964196 94964196 A C SERPINA12 Missense_Mutation p.F180C 0.47 deleterious(0) possibly_damaging(0.905) TCGA-B1-A655-01 15 38798102 38798102 T C RASGRP1 Missense_Mutation p.Y421C 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-B1-A655-01 15 40660678 40660678 C G DISP2 Missense_Mutation p.P789A 0.28 deleterious(0) probably_damaging(1) TCGA-B1-A655-01 15 42005518 42005518 G C MGA Missense_Mutation p.R1085T 0.29 deleterious(0) probably_damaging(0.978) TCGA-B1-A655-01 15 49074426 49074426 C - CEP152 Frame_Shift_Del p.S442Qfs*21 0.26 TCGA-B1-A655-01 15 85400827 85400827 A T ALPK3 Missense_Mutation p.D1155V 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-B1-A655-01 16 1268594 1268594 C A CACNA1H Missense_Mutation p.H1944N 0.32 tolerated(0.24) benign(0.07) TCGA-B1-A655-01 16 14738464 14738464 C T BFAR Silent p.L87L 0.31 TCGA-B1-A655-01 16 25266603 25266603 C G ZKSCAN2 Missense_Mutation p.E170D 0.23 tolerated(0.05) benign(0.004) TCGA-B1-A655-01 16 48576756 48576756 G C N4BP1 3'UTR 0.50 TCGA-B1-A655-01 16 66804098 66804098 C T CCDC79 Missense_Mutation p.D463N 0.37 tolerated(0.27) benign(0.004) TCGA-B1-A655-01 16 71969289 71969289 T C RP11-498D10.6 3'Flank 0.39 TCGA-B1-A655-01 17 37814678 37814685 TGGCTACC - STARD3 Frame_Shift_Del p.G151Afs*17 0.30 TCGA-B1-A655-01 17 41203099 41203099 G A BRCA1 Silent p.P1792P 0.39 TCGA-B1-A655-01 17 45518349 45518349 T A EFCAB13 3'UTR 0.64 TCGA-B1-A655-01 17 58121036 58121036 G T HEATR6 Missense_Mutation p.P1145Q 0.23 tolerated(0.59) benign(0.04) TCGA-B1-A655-01 17 65162707 65162707 T C HELZ Silent p.Q594Q 0.08 TCGA-B1-A655-01 17 66265196 66265196 C G SLC16A6 3'UTR 0.06 TCGA-B1-A655-01 17 6943299 6943299 C T SLC16A13 3'UTR 0.29 TCGA-B1-A655-01 17 7578271 7578271 T G TP53 Missense_Mutation p.H193P 0.23 deleterious(0) probably_damaging(1) TCGA-B1-A655-01 17 79496379 79496379 G A FSCN2 Silent p.R274R 0.58 TCGA-B1-A655-01 17 79865647 79865647 A G PCYT2 Splice_Site p.X164_splice 0.27 TCGA-B1-A655-01 18 77659162 77659162 G A KCNG2 Silent p.A249A 0.22 TCGA-B1-A655-01 19 10395839 10395839 T A ICAM1 Missense_Mutation p.I492K 0.36 deleterious(0.03) benign(0.087) TCGA-B1-A655-01 19 13418985 13418985 A - CACNA1A Frame_Shift_Del p.F621Sfs*37 0.24 TCGA-B1-A655-01 19 39913652 39913652 G A PLEKHG2 Missense_Mutation p.G653D 0.06 tolerated_low_confidence(0.17) benign(0.087) TCGA-B1-A655-01 19 49674876 49674876 C T TRPM4 Silent p.L300L 0.32 TCGA-B1-A655-01 19 52091298 52091298 T C ZNF175 Missense_Mutation p.S572P 0.29 deleterious(0.01) possibly_damaging(0.758) TCGA-B1-A655-01 1 115221050 115221050 A G AMPD1 Silent p.Y365Y 0.35 TCGA-B1-A655-01 1 1326940 1326940 C A CCNL2 Intron 0.31 TCGA-B1-A655-01 1 145765085 145765085 A G GPR89A Silent p.A434A 0.33 TCGA-B1-A655-01 1 162724591 162724591 T G DDR2 Missense_Mutation p.N121K 0.37 tolerated(0.85) benign(0.01) TCGA-B1-A655-01 1 17318334 17318334 G T ATP13A2 Missense_Mutation p.L716M 0.28 tolerated(1) possibly_damaging(0.714) TCGA-B1-A655-01 1 185953350 185953350 T G HMCN1 Missense_Mutation p.I947S 0.05 benign(0.34) TCGA-B1-A655-01 1 21936724 21936724 G C RAP1GAP Silent p.V360V 0.28 TCGA-B1-A655-01 1 226895480 226895480 A G ITPKB Intron 0.49 TCGA-B1-A655-01 1 28218509 28218509 A T RPA2 3'UTR 0.31 TCGA-B1-A655-01 1 36939407 36939408 - GTC CSF3R In_Frame_Ins p.G147_P148insR 0.33 TCGA-B1-A655-01 1 45242407 45242407 C G RPS8 Missense_Mutation p.L58V 0.43 deleterious(0.01) benign(0.119) TCGA-B1-A655-01 1 47489659 47489659 A - CYP4X1 Frame_Shift_Del p.H57Pfs*47 0.25 TCGA-B1-A655-01 1 6279565 6279565 A - RNF207 3'UTR 0.19 TCGA-B1-A655-01 1 85097342 85097342 G A C1orf180 Missense_Mutation p.P17S 0.40 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-B1-A655-01 20 24523674 24523674 G C SYNDIG1 5'UTR 0.53 TCGA-B1-A655-01 20 24523675 24523675 G T SYNDIG1 5'UTR 0.53 TCGA-B1-A655-01 20 50051812 50051813 GC - NFATC2 Frame_Shift_Del p.H649Yfs*39 0.20 TCGA-B1-A655-01 21 40665927 40665927 G T BRWD1 Nonsense_Mutation p.S214* 0.34 TCGA-B1-A655-01 22 32754194 32754194 T A RFPL3 Missense_Mutation p.Y46N 0.27 tolerated(0.09) probably_damaging(0.999) TCGA-B1-A655-01 22 32754195 32754195 A T RFPL3 Missense_Mutation p.Y46F 0.27 tolerated(0.14) probably_damaging(0.997) TCGA-B1-A655-01 22 37602594 37602594 A G SSTR3 Missense_Mutation p.Y417H 0.21 deleterious_low_confidence(0) possibly_damaging(0.671) TCGA-B1-A655-01 2 100903452 100903452 G A LONRF2 Missense_Mutation p.A665V 0.08 tolerated(0.45) benign(0.045) TCGA-B1-A655-01 2 131520234 131520234 C T AMER3 Nonsense_Mutation p.R197* 0.12 TCGA-B1-A655-01 2 168108259 168108259 C T XIRP2 Missense_Mutation p.H3453Y 0.40 benign(0.226) TCGA-B1-A655-01 2 169780012 169780012 T - ABCB11 3'UTR 0.21 TCGA-B1-A655-01 2 172700922 172700937 CGGTTATGCCCAAAAT - SLC25A12 Frame_Shift_Del p.H136Rfs*36 0.15 TCGA-B1-A655-01 2 17896324 17896324 T A SMC6 Missense_Mutation p.I512F 0.41 deleterious(0.03) probably_damaging(0.929) TCGA-B1-A655-01 2 179577514 179577514 C T TTN Missense_Mutation p.D9080N 0.28 TCGA-B1-A655-01 2 1805513 1805513 T C MYT1L Silent p.E1075E 0.28 TCGA-B1-A655-01 2 20647312 20647312 A G RHOB Missense_Mutation p.E29G 0.30 tolerated(0.11) benign(0.019) TCGA-B1-A655-01 2 207655323 207655323 T C FASTKD2 Silent p.S642S 0.33 TCGA-B1-A655-01 2 238666100 238666100 A T LRRFIP1 Intron 0.28 TCGA-B1-A655-01 2 239103239 239103239 C T ILKAP Intron 0.56 TCGA-B1-A655-01 2 27427730 27427730 G C SLC5A6 Silent p.L268L 0.31 TCGA-B1-A655-01 2 55806886 55806886 A - SMEK2 Frame_Shift_Del p.F466Sfs*14 0.26 TCGA-B1-A655-01 2 74684908 74684908 T A INO80B Missense_Mutation p.C330S 0.32 deleterious(0) probably_damaging(0.977) TCGA-B1-A655-01 2 89037541 89037541 T G RPIA Missense_Mutation p.F262L 0.09 deleterious(0) probably_damaging(0.998) TCGA-B1-A655-01 2 97368368 97368368 A C LMAN2L 3'Flank 0.36 TCGA-B1-A655-01 3 154858036 154858036 A G MME Silent p.T304T 0.34 TCGA-B1-A655-01 3 182897126 182897126 C T MCF2L2 3'UTR 0.07 TCGA-B1-A655-01 3 44612087 44612087 T C ZKSCAN7 Silent p.Y495Y 0.09 TCGA-B1-A655-01 3 45989447 45989447 C T CXCR6 3'Flank 0.14 TCGA-B1-A655-01 3 51452313 51452313 T G VPRBP Splice_Site p.X773_splice 0.09 TCGA-B1-A655-01 3 52720200 52720200 T C GNL3 Intron 0.29 TCGA-B1-A655-01 4 141302294 141302294 T C SCOC 3'UTR 0.35 TCGA-B1-A655-01 4 44688034 44688034 T C GUF1 Missense_Mutation p.I243T 0.26 deleterious(0) possibly_damaging(0.661) TCGA-B1-A655-01 4 7811366 7811366 T C AFAP1 Silent p.S343S 0.33 TCGA-B1-A655-01 4 88996109 88996109 G C PKD2 Missense_Mutation p.E890Q 0.20 deleterious(0) probably_damaging(0.995) TCGA-B1-A655-01 5 13839483 13839483 A C DNAH5 Missense_Mutation p.I1955R 0.34 possibly_damaging(0.712) TCGA-B1-A655-01 5 139506144 139506144 A C IGIP 5'UTR 0.24 TCGA-B1-A655-01 5 140745640 140745640 C T PCDHGA5 Silent p.S581S 0.32 TCGA-B1-A655-01 5 171661228 171661228 C T UBTD2 Missense_Mutation p.E69K 0.34 deleterious(0) benign(0.079) TCGA-B1-A655-01 5 176798989 176798989 C T RGS14 Silent p.P538P 0.38 TCGA-B1-A655-01 5 33998825 33998825 A G AMACR Silent p.Y220Y 0.33 TCGA-B1-A655-01 5 64766709 64766709 C T ADAMTS6 Missense_Mutation p.G120R 0.25 tolerated(0.15) possibly_damaging(0.766) TCGA-B1-A655-01 6 126250025 126250025 A G NCOA7 3'UTR 0.33 TCGA-B1-A655-01 6 132059234 132059234 A C ENPP3 Missense_Mutation p.N744T 0.38 deleterious(0) probably_damaging(0.997) TCGA-B1-A655-01 6 158358486 158358486 C A SNX9 Missense_Mutation p.F488L 0.25 tolerated(0.67) benign(0.116) TCGA-B1-A655-01 6 2624333 2624333 C G C6orf195 5'UTR 0.10 TCGA-B1-A655-01 6 27100264 27100264 G A HIST1H2BJ Missense_Mutation p.T89I 0.34 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-B1-A655-01 6 39285639 39285639 G T KCNK16 Missense_Mutation p.L140I 0.11 tolerated(0.07) probably_damaging(0.946) TCGA-B1-A655-01 6 57467163 57467163 G C PRIM2 3'UTR 0.04 TCGA-B1-A655-01 6 84233613 84233613 C T PRSS35 Silent p.S151S 0.35 TCGA-B1-A655-01 7 12680013 12680013 T - SCIN Frame_Shift_Del p.L485Cfs*51 0.23 TCGA-B1-A655-01 7 39504216 39504216 A - POU6F2 Frame_Shift_Del p.K670Nfs*14 0.20 TCGA-B1-A655-01 7 44185276 44185276 C G GCK Missense_Mutation p.R359P 0.38 tolerated(0.29) benign(0.328) TCGA-B1-A655-01 7 6077111 6077112 - T EIF2AK1 Frame_Shift_Ins p.L426Ifs*10 0.15 TCGA-B1-A655-01 7 75070316 75070316 A C POM121C Missense_Mutation p.L48R 0.26 deleterious(0) probably_damaging(0.939) TCGA-B1-A655-01 8 145134932 145134932 C T EXOSC4 Silent p.R86R 0.34 TCGA-B1-A655-01 8 145640398 145640398 G T SLC39A4 Missense_Mutation p.P255H 0.37 tolerated(0.13) benign(0.059) TCGA-B1-A655-01 8 2020508 2020508 G C MYOM2 Missense_Mutation p.E293Q 0.27 deleterious(0.04) possibly_damaging(0.878) TCGA-B1-A655-01 8 23198538 23198538 G A LOXL2 Missense_Mutation p.P237L 0.32 deleterious(0.01) probably_damaging(1) TCGA-B1-A655-01 9 125315955 125315955 C T OR1N2 Silent p.T169T 0.40 TCGA-B1-A655-01 9 134889753 134889753 A G MED27 Silent p.A150A 0.17 TCGA-B1-A655-01 9 15190552 15190552 C G TTC39B Missense_Mutation p.G369R 0.09 deleterious(0) probably_damaging(1) TCGA-B1-A655-01 9 15729747 15729747 T C CCDC171 Missense_Mutation p.L667P 0.30 deleterious(0) probably_damaging(1) TCGA-B1-A655-01 9 35698339 35698339 T G TLN1 Missense_Mutation p.E2451A 0.10 tolerated(0.08) benign(0.197) TCGA-B1-A655-01 9 35792786 35792786 T C NPR2 Silent p.S127S 0.22 TCGA-B1-A655-01 9 35800822 35800822 C - NPR2 Frame_Shift_Del p.P446Hfs*31 0.22 TCGA-B1-A655-01 X 102841991 102841991 A G TCEAL4 Missense_Mutation p.T130A 0.45 deleterious(0.01) possibly_damaging(0.531) TCGA-B1-A655-01 X 103294650 103294650 A T H2BFM Missense_Mutation p.Q36L 0.49 deleterious(0.02) possibly_damaging(0.468) TCGA-B1-A655-01 X 29973429 29973429 A C IL1RAPL1 Missense_Mutation p.K528T 0.47 deleterious(0) probably_damaging(0.999) TCGA-B1-A655-01 X 71427693 71427693 G T ERCC6L Silent p.A308A 0.04 TCGA-B1-A656-01 10 108371744 108371744 G T SORCS1 Missense_Mutation p.N986K 0.27 deleterious(0.01) possibly_damaging(0.691) TCGA-B1-A656-01 10 45936826 45936826 T A ALOX5 Missense_Mutation p.I407N 0.35 deleterious(0) probably_damaging(0.992) TCGA-B1-A656-01 10 51585173 51585173 G A NCOA4 Silent p.K440K 0.31 TCGA-B1-A656-01 10 64566072 64566072 G A ADO 3'UTR 0.33 TCGA-B1-A656-01 10 74879906 74879906 A C NUDT13 Missense_Mutation p.S72R 0.34 tolerated(0.13) benign(0.078) TCGA-B1-A656-01 10 80968102 80968102 A T ZMIZ1 Missense_Mutation p.N24Y 0.25 probably_damaging(0.991) TCGA-B1-A656-01 11 103091430 103091430 C G DYNC2H1 Missense_Mutation p.P3009A 0.13 probably_damaging(0.99) TCGA-B1-A656-01 11 117186300 117186300 G A BACE1 Missense_Mutation p.S71L 0.37 deleterious(0.01) probably_damaging(0.95) TCGA-B1-A656-01 11 130319535 130319535 C G ADAMTS15 Missense_Mutation p.L223V 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-B1-A656-01 11 27402259 27402259 C G LGR4 Splice_Site p.X277_splice 0.32 TCGA-B1-A656-01 11 64034708 64034708 C T PLCB3 Nonsense_Mutation p.Q1156* 0.32 TCGA-B1-A656-01 11 64813975 64813975 G A NAALADL1 Silent p.Y541Y 0.22 TCGA-B1-A656-01 11 72145214 72145214 T A CLPB Missense_Mutation p.D102V 0.21 tolerated_low_confidence(0.09) benign(0.002) TCGA-B1-A656-01 11 74168349 74168349 T A KCNE3 Missense_Mutation p.K87M 0.21 deleterious(0) probably_damaging(0.999) TCGA-B1-A656-01 11 74168350 74168350 T A KCNE3 Nonsense_Mutation p.K87* 0.21 TCGA-B1-A656-01 11 7818418 7818418 T A OR5P2 Silent p.P24P 0.22 TCGA-B1-A656-01 11 7818419 7818419 G A OR5P2 Missense_Mutation p.P24L 0.22 deleterious(0.03) benign(0.062) TCGA-B1-A656-01 11 7818420 7818420 G T OR5P2 Missense_Mutation p.P24T 0.23 deleterious(0.02) benign(0.175) TCGA-B1-A656-01 11 86663362 86663362 T C FZD4 Missense_Mutation p.S146G 0.20 tolerated(0.12) possibly_damaging(0.867) TCGA-B1-A656-01 12 110902939 110902939 T C GPN3 Silent p.A82A 0.15 TCGA-B1-A656-01 12 14839143 14839143 C G GUCY2C Missense_Mutation p.G116A 0.39 tolerated(0.12) probably_damaging(0.999) TCGA-B1-A656-01 12 40076521 40076521 A - C12orf40 Frame_Shift_Del p.I266Yfs*19 0.18 TCGA-B1-A656-01 12 57112267 57112267 G T NACA Intron 0.25 TCGA-B1-A656-01 12 59268266 59268266 T G LRIG3 Missense_Mutation p.M929L 0.36 tolerated_low_confidence(0.68) benign(0) TCGA-B1-A656-01 13 113719317 113719318 - G MCF2L Frame_Shift_Ins p.A226Gfs*2 0.16 TCGA-B1-A656-01 13 32912897 32912897 G T BRCA2 Missense_Mutation p.D1469Y 0.28 deleterious(0.01) possibly_damaging(0.77) TCGA-B1-A656-01 13 39585418 39585418 C A PROSER1 3'UTR 0.19 TCGA-B1-A656-01 13 73636276 73636276 C T KLF5 Missense_Mutation p.P180L 0.22 deleterious(0.04) probably_damaging(0.982) TCGA-B1-A656-01 14 20585754 20585754 G A OR4K17 Silent p.S63S 0.28 TCGA-B1-A656-01 14 62213865 62213865 T G HIF1A 3'UTR 0.24 TCGA-B1-A656-01 14 74180736 74180736 T A PNMA1 5'UTR 0.40 TCGA-B1-A656-01 15 39877738 39877738 A G THBS1 Missense_Mutation p.D365G 0.22 deleterious(0.01) possibly_damaging(0.768) TCGA-B1-A656-01 15 40685538 40685538 A G KNSTRN Intron 0.33 TCGA-B1-A656-01 15 41136856 41136856 C A SPINT1 Missense_Mutation p.A35D 0.28 tolerated(0.11) possibly_damaging(0.856) TCGA-B1-A656-01 15 42837381 42837381 C T LRRC57 Missense_Mutation p.S191N 0.35 tolerated(0.42) benign(0.025) TCGA-B1-A656-01 15 49148178 49148178 G T SHC4 Missense_Mutation p.P405H 0.24 tolerated(0.11) possibly_damaging(0.847) TCGA-B1-A656-01 15 63889797 63889797 C T FBXL22 Missense_Mutation p.P69L 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B1-A656-01 15 71128826 71128826 T C LARP6 Silent p.G73G 0.33 TCGA-B1-A656-01 15 88680721 88680721 T C NTRK3 Missense_Mutation p.E179G 0.11 tolerated(0.25) possibly_damaging(0.546) TCGA-B1-A656-01 16 14678281 14678281 T C PARN Splice_Site p.X336_splice 0.36 TCGA-B1-A656-01 16 20489950 20489950 G A ACSM2A Missense_Mutation p.G411D 0.37 deleterious(0) probably_damaging(0.954) TCGA-B1-A656-01 16 24801321 24801321 C G TNRC6A Missense_Mutation p.P453R 0.24 deleterious(0) probably_damaging(0.999) TCGA-B1-A656-01 16 31228204 31228204 A G PYDC1 Missense_Mutation p.I49T 0.22 tolerated(0.19) benign(0.193) TCGA-B1-A656-01 16 48576974 48576974 G A N4BP1 Silent p.P844P 0.14 TCGA-B1-A656-01 16 50338447 50338447 C T ADCY7 Silent p.N515N 0.23 TCGA-B1-A656-01 16 75276534 75276534 G C BCAR1 Missense_Mutation p.P202R 0.28 deleterious(0.02) benign(0.157) TCGA-B1-A656-01 16 837749 837749 C T RPUSD1 5'UTR 0.40 TCGA-B1-A656-01 17 13504436 13504436 G T HS3ST3A1 Missense_Mutation p.P4Q 0.21 deleterious_low_confidence(0.02) benign(0.174) TCGA-B1-A656-01 17 33288777 33288777 C A ZNF830 Silent p.L64L 0.40 TCGA-B1-A656-01 17 34934557 34934557 C T GGNBP2 Silent p.C262C 0.21 TCGA-B1-A656-01 17 41020555 41020555 C T AOC4P RNA 0.23 TCGA-B1-A656-01 17 41343439 41343439 T C NBR1 Missense_Mutation p.L305S 0.26 deleterious(0) probably_damaging(1) TCGA-B1-A656-01 17 45056083 45056083 G T RPRML Missense_Mutation p.S97R 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-B1-A656-01 17 72862364 72862364 G A FDXR Silent p.S175S 0.15 TCGA-B1-A656-01 18 13055803 13055803 A T CEP192 Missense_Mutation p.T1072S 0.33 deleterious(0.02) possibly_damaging(0.586) TCGA-B1-A656-01 18 20814665 20814665 G A CABLES1 Silent p.G394G 0.31 TCGA-B1-A656-01 18 60384475 60384475 T A PHLPP1 Missense_Mutation p.L520H 0.36 deleterious(0) probably_damaging(0.991) TCGA-B1-A656-01 19 10444569 10444569 T A ICAM3 Silent p.T536T 0.19 TCGA-B1-A656-01 19 12740160 12740160 A T ZNF791 3'UTR 0.46 TCGA-B1-A656-01 19 15752256 15752256 C G CYP4F3 Missense_Mutation p.L11V 0.25 deleterious(0.04) possibly_damaging(0.493) TCGA-B1-A656-01 19 19905760 19905760 G C ZNF506 Silent p.P312P 0.25 TCGA-B1-A656-01 19 41129532 41129532 C T LTBP4 Nonsense_Mutation p.R1260* 0.29 TCGA-B1-A656-01 19 41627458 41627458 C T CYP2F1 Missense_Mutation p.R194C 0.29 deleterious(0.01) probably_damaging(0.973) TCGA-B1-A656-01 19 4306032 4306032 C T FSD1 Silent p.N35N 0.34 TCGA-B1-A656-01 19 43772079 43772079 C T PSG9 Missense_Mutation p.S96N 0.29 deleterious(0) possibly_damaging(0.615) TCGA-B1-A656-01 19 45561034 45561034 G A CLASRP Missense_Mutation p.G164D 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-B1-A656-01 19 4792820 4792820 C A FEM1A Silent p.A318A 0.29 TCGA-B1-A656-01 19 52660313 52660313 A T ZNF836 Missense_Mutation p.L208H 0.27 tolerated(0.83) possibly_damaging(0.533) TCGA-B1-A656-01 19 57286732 57286732 C T ZIM2 Missense_Mutation p.G303E 0.24 tolerated(0.09) benign(0.1) TCGA-B1-A656-01 19 8922694 8922694 A G ZNF558 Missense_Mutation p.F158L 0.13 tolerated(0.2) possibly_damaging(0.824) TCGA-B1-A656-01 19 9639297 9639297 G A ZNF426 Missense_Mutation p.P475L 0.25 deleterious(0) probably_damaging(0.942) TCGA-B1-A656-01 1 150459921 150459921 A G TARS2 5'UTR 0.27 TCGA-B1-A656-01 1 150479669 150479669 C G TARS2 3'UTR 0.25 TCGA-B1-A656-01 1 155734744 155734744 A G GON4L Intron 0.28 TCGA-B1-A656-01 1 170508438 170508438 A C GORAB Missense_Mutation p.K75T 0.26 deleterious(0.02) possibly_damaging(0.795) TCGA-B1-A656-01 1 182369011 182369011 A G TEDDM1 Missense_Mutation p.W204R 0.25 deleterious(0.04) possibly_damaging(0.824) TCGA-B1-A656-01 1 1960690 1960690 G A GABRD Missense_Mutation p.A278T 0.12 deleterious(0) probably_damaging(0.999) TCGA-B1-A656-01 1 206767112 206767112 C T EIF2D Missense_Mutation p.G514S 0.23 deleterious(0) probably_damaging(1) TCGA-B1-A656-01 1 223983631 223983631 C A TP53BP2 Missense_Mutation p.E870D 0.24 deleterious(0.04) probably_damaging(0.99) TCGA-B1-A656-01 1 226555997 226555999 GAG - PARP1 In_Frame_Del p.S727del 0.21 TCGA-B1-A656-01 1 232945512 232945512 A T MAP10 3'UTR 0.24 TCGA-B1-A656-01 1 27100918 27100918 T C ARID1A Silent p.P1400P 0.23 TCGA-B1-A656-01 1 27943445 27943445 T A FGR Missense_Mutation p.K202I 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-B1-A656-01 1 36921882 36921882 A G MRPS15 Missense_Mutation p.I181T 0.30 tolerated(1) benign(0.012) TCGA-B1-A656-01 1 94033045 94033045 G C BCAR3 Missense_Mutation p.S697C 0.21 deleterious(0.02) possibly_damaging(0.816) TCGA-B1-A656-01 1 94655805 94655805 A T ARHGAP29 Intron 0.50 TCGA-B1-A656-01 20 13029789 13029789 G A SPTLC3 Intron 0.28 TCGA-B1-A656-01 20 3452154 3452154 G C ATRN Missense_Mutation p.G134R 0.19 deleterious(0) probably_damaging(0.991) TCGA-B1-A656-01 21 32639267 32639267 G A TIAM1 Missense_Mutation p.H8Y 0.29 deleterious_low_confidence(0.01) benign(0) TCGA-B1-A656-01 22 42093588 42093588 A G C22orf46 3'UTR 0.21 TCGA-B1-A656-01 2 100019396 100019397 - A REV1 Frame_Shift_Ins p.D1114* 0.22 TCGA-B1-A656-01 2 125175092 125175092 G A CNTNAP5 Missense_Mutation p.V152I 0.33 tolerated(0.13) benign(0.011) TCGA-B1-A656-01 2 16082258 16082258 A G MYCN Silent p.L24L 0.27 TCGA-B1-A656-01 2 179843225 179843225 C A CCDC141 Nonsense_Mutation p.E135* 0.16 TCGA-B1-A656-01 2 191069874 191069874 T C HIBCH Missense_Mutation p.K377R 0.28 tolerated(0.24) benign(0.024) TCGA-B1-A656-01 2 233898967 233898967 C T NEU2 Silent p.L115L 0.19 TCGA-B1-A656-01 2 24055201 24055201 A T ATAD2B Intron 0.28 TCGA-B1-A656-01 2 32264491 32264491 T A DPY30 Missense_Mutation p.Q12L 0.29 tolerated(0.08) benign(0.008) TCGA-B1-A656-01 2 46607787 46607787 C G EPAS1 Missense_Mutation p.T659R 0.24 tolerated(0.56) benign(0.004) TCGA-B1-A656-01 2 64685653 64685653 A - LGALSL 3'UTR 0.27 TCGA-B1-A656-01 3 13525052 13525052 T G HDAC11 Silent p.L80L 0.62 TCGA-B1-A656-01 3 3133807 3133807 G T IL5RA Intron 0.15 TCGA-B1-A656-01 3 42218379 42218379 G A TRAK1 Silent p.E120E 0.47 TCGA-B1-A656-01 3 43388848 43388848 A T SNRK Missense_Mutation p.K366I 0.64 deleterious(0.05) possibly_damaging(0.553) TCGA-B1-A656-01 3 47165390 47165391 - A SETD2 Frame_Shift_Ins p.V246Cfs*10 0.35 TCGA-B1-A656-01 3 52649430 52649430 T A PBRM1 Nonsense_Mutation p.K621* 0.57 TCGA-B1-A656-01 3 57616537 57616537 T G DENND6A Missense_Mutation p.L474F 0.33 tolerated(0.05) probably_damaging(0.996) TCGA-B1-A656-01 4 154542029 154542029 C A KIAA0922 Nonsense_Mutation p.S1230* 0.29 TCGA-B1-A656-01 4 165891293 165891293 G C TRIM61 5'UTR 0.45 TCGA-B1-A656-01 4 73012854 73012854 C G NPFFR2 Silent p.S298S 0.27 TCGA-B1-A656-01 4 8230146 8230146 T C SH3TC1 Missense_Mutation p.F909L 0.31 tolerated(0.43) benign(0.023) TCGA-B1-A656-01 4 89658657 89658657 T A FAM13A Missense_Mutation p.E871V 0.29 deleterious(0) probably_damaging(0.994) TCGA-B1-A656-01 5 13788822 13788822 T A DNAH5 Intron 0.36 TCGA-B1-A656-01 5 138855862 138855862 C T TMEM173 Missense_Mutation p.R375H 0.42 deleterious(0.05) probably_damaging(1) TCGA-B1-A656-01 5 176305475 176305475 G A UNC5A Splice_Site p.X674_splice 0.23 TCGA-B1-A656-01 5 176395662 176395662 C T UIMC1 Missense_Mutation p.R365K 0.22 deleterious(0.03) possibly_damaging(0.535) TCGA-B1-A656-01 5 179250983 179250983 A T SQSTM1 Missense_Mutation p.S143C 0.45 deleterious(0) benign(0.155) TCGA-B1-A656-01 5 76029290 76029290 A G F2R Missense_Mutation p.N414D 0.17 tolerated(0.06) benign(0.131) TCGA-B1-A656-01 6 168377462 168377462 G A RP3-470B24.5 RNA 0.32 TCGA-B1-A656-01 6 30622528 30622528 C A DHX16 Silent p.L984L 0.29 TCGA-B1-A656-01 6 30951939 30951939 G A MUC21 Intron 0.31 TCGA-B1-A656-01 6 70646796 70646796 A G COL19A1 Silent p.P289P 0.27 TCGA-B1-A656-01 7 100485704 100485704 C A SRRT Missense_Mutation p.Q790K 0.45 deleterious(0.04) probably_damaging(0.959) TCGA-B1-A656-01 7 105673047 105673047 G - CDHR3 Frame_Shift_Del p.G855Vfs*20 0.17 TCGA-B1-A656-01 7 107556127 107556128 AA T DLD Frame_Shift_Del p.I289Lfs*36 0.12 TCGA-B1-A656-01 7 122081599 122081599 A G CADPS2 Silent p.G773G 0.19 TCGA-B1-A656-01 7 129592340 129592340 T C UBE2H Intron 0.25 TCGA-B1-A656-01 7 150501526 150501526 G T TMEM176A Missense_Mutation p.W211L 0.17 tolerated(0.42) benign(0.002) TCGA-B1-A656-01 7 28996484 28996484 G A AC005013.5 5'Flank 0.25 TCGA-B1-A656-01 7 48319048 48319048 G A ABCA13 Missense_Mutation p.D2753N 0.20 benign(0.076) TCGA-B1-A656-01 7 72717405 72717408 GCCT - NSUN5 Frame_Shift_Del p.E467Vfs*46 0.57 TCGA-B1-A656-01 7 73535230 73535230 G A LIMK1 Silent p.G544G 0.04 TCGA-B1-A656-01 7 90896150 90896150 T C FZD1 3'UTR 0.14 TCGA-B1-A656-01 7 97833339 97833339 T G LMTK2 Missense_Mutation p.S1442A 0.43 tolerated(0.33) benign(0.016) TCGA-B1-A656-01 8 41551436 41551436 C T ANK1 Missense_Mutation p.R1212H 0.23 deleterious(0) probably_damaging(0.91) TCGA-B1-A656-01 8 42302170 42302170 T - SLC20A2 Frame_Shift_Del p.I242* 0.23 TCGA-B1-A656-01 9 130438137 130438137 G A STXBP1 Missense_Mutation p.A389T 0.23 tolerated(0.58) possibly_damaging(0.892) TCGA-B1-A656-01 9 130582297 130582297 G A ENG Missense_Mutation p.T385M 0.16 tolerated(0.17) benign(0.033) TCGA-B1-A656-01 9 132400146 132400146 T A ASB6 Nonsense_Mutation p.K397* 0.30 TCGA-B1-A656-01 9 19516367 19516367 A - SLC24A2 Frame_Shift_Del p.H591Tfs*38 0.22 TCGA-B1-A656-01 9 3271084 3271084 C G RFX3 Missense_Mutation p.S374T 0.28 tolerated(0.93) benign(0.004) TCGA-B1-A656-01 9 35754147 35754147 A G MSMP 5'UTR 0.30 TCGA-B1-A656-01 9 85624582 85624582 A T RASEF Nonsense_Mutation p.Y311* 0.22 TCGA-B1-A656-01 X 101152941 101152941 A T ZMAT1 Silent p.I135I 0.46 TCGA-B1-A656-01 X 110544774 110544774 C G DCX 3'UTR 0.54 TCGA-B1-A656-01 X 113997817 113997817 C T HTR2C Intron 0.36 TCGA-B1-A656-01 X 152937048 152937048 G C PNCK Missense_Mutation p.A248G 0.58 tolerated(0.42) benign(0.006) TCGA-B1-A656-01 X 15403223 15403224 - TCA PIR In_Frame_Ins p.M258dup 0.33 TCGA-B1-A656-01 X 1540611 1540611 G C ASMTL Missense_Mutation p.I395M 0.41 deleterious(0.02) possibly_damaging(0.673) TCGA-B1-A656-01 X 23723161 23723161 G A ACOT9 Silent p.I352I 0.61 TCGA-B1-A657-01 10 135372389 135372389 A T SYCE1 Missense_Mutation p.L88Q 0.29 deleterious(0) probably_damaging(0.973) TCGA-B1-A657-01 10 135372390 135372390 G T SYCE1 Missense_Mutation p.L88M 0.29 deleterious(0.02) possibly_damaging(0.527) TCGA-B1-A657-01 10 89692845 89692845 A - PTEN Frame_Shift_Del p.Q110Hfs*3 0.20 TCGA-B1-A657-01 11 61111339 61111339 A G DAK Missense_Mutation p.T332A 0.29 deleterious(0.02) benign(0.046) TCGA-B1-A657-01 11 66359427 66359427 C T CCDC87 Missense_Mutation p.A354T 0.42 tolerated(0.06) benign(0.077) TCGA-B1-A657-01 11 67058950 67058950 C A ANKRD13D Missense_Mutation p.P119T 0.28 deleterious(0.01) possibly_damaging(0.625) TCGA-B1-A657-01 11 67267651 67267651 G A PITPNM1 Silent p.P294P 0.45 TCGA-B1-A657-01 12 12303827 12303827 G C LRP6 Silent p.L979L 0.26 TCGA-B1-A657-01 12 50529605 50529605 T C CERS5 Missense_Mutation p.N261S 0.24 deleterious(0) benign(0.285) TCGA-B1-A657-01 12 71139777 71139777 T A PTPRR Missense_Mutation p.L276F 0.27 tolerated(0.3) benign(0.238) TCGA-B1-A657-01 13 28367053 28367053 C T GSX1 Silent p.L76L 0.29 TCGA-B1-A657-01 13 35758158 35758158 T G NBEA Missense_Mutation p.F1626C 0.31 tolerated_low_confidence(0.17) benign(0.135) TCGA-B1-A657-01 13 98865472 98865472 A G FARP1 Splice_Site 0.30 TCGA-B1-A657-01 14 106091025 106091025 C A IGHG4 Missense_Mutation p.A258S 0.22 tolerated(1) benign(0.003) TCGA-B1-A657-01 14 53099007 53099007 T A GPR137C Missense_Mutation p.W283R 0.19 deleterious(0) probably_damaging(0.986) TCGA-B1-A657-01 15 33024381 33024381 C A GREM1 3'UTR 0.27 TCGA-B1-A657-01 15 40331316 40331316 A G SRP14 Translation_Start_Site p.M1? 0.11 deleterious(0) possibly_damaging(0.907) TCGA-B1-A657-01 15 41099608 41099608 A G ZFYVE19 5'UTR 0.26 TCGA-B1-A657-01 15 44105507 44105507 C T MFAP1 Silent p.Q222Q 0.31 TCGA-B1-A657-01 15 49304926 49304926 A T SECISBP2L Silent p.S550S 0.23 TCGA-B1-A657-01 15 64448384 64448384 A G SNX22 3'UTR 0.32 TCGA-B1-A657-01 15 65114469 65114469 A T PIF1 Missense_Mutation p.F271L 0.20 deleterious(0) probably_damaging(0.998) TCGA-B1-A657-01 15 73581573 73581573 C A NEO1 Missense_Mutation p.P1246T 0.44 tolerated(0.09) probably_damaging(1) TCGA-B1-A657-01 15 74325643 74325643 G A PML Silent p.K515K 0.23 TCGA-B1-A657-01 15 85476453 85476453 G A SLC28A1 Silent p.P387P 0.31 TCGA-B1-A657-01 16 19179812 19179812 G T SYT17 5'UTR 0.07 TCGA-B1-A657-01 16 31092685 31092685 C T ZNF646 Silent p.T1680T 0.18 TCGA-B1-A657-01 16 31335987 31335987 C A ITGAM Missense_Mutation p.P726T 0.12 tolerated(0.44) benign(0.003) TCGA-B1-A657-01 16 3487293 3487293 A T ZNF597 Missense_Mutation p.L136I 0.59 tolerated(0.16) possibly_damaging(0.629) TCGA-B1-A657-01 16 4322892 4322892 G T TFAP4 5'UTR 0.33 TCGA-B1-A657-01 16 69988283 69988283 T C CLEC18A Missense_Mutation p.L88P 0.46 tolerated(0.3) benign(0.033) TCGA-B1-A657-01 16 72984405 72984405 A C ZFHX3 Missense_Mutation p.V1060G 0.51 probably_damaging(0.991) TCGA-B1-A657-01 16 84270270 84270270 C T KCNG4 Intron 0.50 TCGA-B1-A657-01 16 87678517 87678517 G A JPH3 Missense_Mutation p.G346S 0.39 tolerated(0.1) possibly_damaging(0.701) TCGA-B1-A657-01 17 27949913 27949913 C T CORO6 5'UTR 0.50 TCGA-B1-A657-01 17 40010765 40010765 T C KLHL11 Missense_Mutation p.K452E 0.45 tolerated(0.23) benign(0.02) TCGA-B1-A657-01 17 40010766 40010766 G T KLHL11 Silent p.V451V 0.45 TCGA-B1-A657-01 17 43009571 43009571 C T KIF18B Silent p.Q414Q 0.13 TCGA-B1-A657-01 17 60663585 60663585 C A TLK2 Missense_Mutation p.H486Q 0.49 tolerated(0.23) benign(0.137) TCGA-B1-A657-01 18 2939488 2939488 T C LPIN2 Missense_Mutation p.E271G 0.38 deleterious(0) probably_damaging(0.999) TCGA-B1-A657-01 18 30992013 30992013 C T CCDC178 Missense_Mutation p.D14N 0.34 tolerated(0.53) benign(0.047) TCGA-B1-A657-01 19 12859011 12859011 A G ASNA1 3'UTR 0.50 TCGA-B1-A657-01 19 12911694 12911694 T C PRDX2 Intron 0.29 TCGA-B1-A657-01 19 45162149 45162149 C T PVR Silent p.H377H 0.07 TCGA-B1-A657-01 19 46215777 46215777 A G FBXO46 Missense_Mutation p.L326P 0.28 tolerated(0.35) probably_damaging(0.955) TCGA-B1-A657-01 19 8183905 8183905 G A FBN3 Silent p.D1071D 0.40 TCGA-B1-A657-01 19 8809128 8809128 T C ACTL9 5'UTR 0.44 TCGA-B1-A657-01 1 153916546 153916546 A G DENND4B Missense_Mutation p.L102P 0.23 deleterious(0) probably_damaging(0.943) TCGA-B1-A657-01 1 155175049 155175049 C T THBS3 Silent p.A115A 0.22 TCGA-B1-A657-01 1 156219753 156219753 A T SMG5 3'UTR 0.32 TCGA-B1-A657-01 1 169798424 169798424 T - C1orf112 Frame_Shift_Del p.F384Sfs*20 0.17 TCGA-B1-A657-01 1 173962176 173962176 A T RC3H1 5'UTR 0.23 TCGA-B1-A657-01 1 182922005 182922005 C G SHCBP1L Silent p.A88A 0.35 TCGA-B1-A657-01 1 197020002 197020002 T C F13B Silent p.K521K 0.41 TCGA-B1-A657-01 1 204379052 204379052 A G PPP1R15B Silent p.I496I 0.32 TCGA-B1-A657-01 1 226570817 226570817 T A PARP1 Missense_Mutation p.E360V 0.41 tolerated(0.26) benign(0.007) TCGA-B1-A657-01 1 229461075 229461076 AG - CCSAP Frame_Shift_Del p.S240Cfs*47 0.27 TCGA-B1-A657-01 1 235345203 235345203 A T ARID4B Missense_Mutation p.F1011I 0.32 tolerated_low_confidence(0.06) probably_damaging(0.989) TCGA-B1-A657-01 20 29960794 29960794 G T DEFB118 Missense_Mutation p.V65F 0.27 tolerated(0.16) benign(0.026) TCGA-B1-A657-01 20 30388879 30388879 G T TPX2 Missense_Mutation p.C747F 0.33 deleterious(0) probably_damaging(0.999) TCGA-B1-A657-01 21 30715180 30715180 T C BACH1 3'UTR 0.31 TCGA-B1-A657-01 22 18899405 18899405 G A DGCR6 3'UTR 0.20 TCGA-B1-A657-01 22 24579518 24579518 T A SUSD2 Missense_Mutation p.C115S 0.42 deleterious(0) probably_damaging(0.937) TCGA-B1-A657-01 22 50355280 50355280 T C PIM3 Missense_Mutation p.L146P 0.35 deleterious(0.04) possibly_damaging(0.762) TCGA-B1-A657-01 2 130939457 130939457 G A SMPD4 5'UTR 0.20 TCGA-B1-A657-01 2 179431535 179431535 T C TTN Missense_Mutation p.T26442A 0.67 TCGA-B1-A657-01 2 97215160 97215160 C A ARID5A Missense_Mutation p.P75T 0.58 deleterious(0) probably_damaging(0.988) TCGA-B1-A657-01 3 12447397 12447397 G C PPARG Silent p.R212R 0.05 TCGA-B1-A657-01 3 127783971 127783971 C A SEC61A1 Intron 0.57 TCGA-B1-A657-01 3 152163262 152163262 C T MBNL1 Silent p.I247I 0.26 TCGA-B1-A657-01 3 179462840 179462840 T A USP13 Missense_Mutation p.I515N 0.40 tolerated(0.48) benign(0.374) TCGA-B1-A657-01 3 195270067 195270067 C G PPP1R2 5'UTR 0.38 TCGA-B1-A657-01 3 196888577 196888577 A T DLG1 Silent p.T172T 0.25 TCGA-B1-A657-01 3 38101279 38101280 - CAT DLEC1 In_Frame_Ins p.H205dup 0.48 TCGA-B1-A657-01 3 49547996 49547996 T C DAG1 Missense_Mutation p.L10P 0.21 tolerated_low_confidence(0.13) benign(0) TCGA-B1-A657-01 3 50644797 50644797 A G CISH 3'UTR 0.56 TCGA-B1-A657-01 3 52361913 52361913 G A DNAH1 Missense_Mutation p.D252N 0.03 benign(0.015) TCGA-B1-A657-01 4 10522421 10522421 T G CLNK Missense_Mutation p.N256H 0.33 tolerated(0.07) benign(0.155) TCGA-B1-A657-01 4 53492228 53492228 T C USP46 Missense_Mutation p.Q173R 0.31 deleterious(0.05) benign(0.033) TCGA-B1-A657-01 4 56759888 56759888 T C EXOC1 Missense_Mutation p.L632P 0.33 deleterious(0) probably_damaging(0.997) TCGA-B1-A657-01 4 80976344 80976344 C - ANTXR2 Frame_Shift_Del p.S172Mfs*38 0.23 TCGA-B1-A657-01 5 121487756 121487756 C A ZNF474 Missense_Mutation p.T24N 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B1-A657-01 5 156565625 156565625 A G MED7 3'UTR 0.27 TCGA-B1-A657-01 5 172660100 172660100 C A NKX2-5 Missense_Mutation p.Q149H 0.28 deleterious(0) probably_damaging(0.986) TCGA-B1-A657-01 5 176520385 176520385 A G FGFR4 Intron 0.44 TCGA-B1-A657-01 6 38863980 38863980 A C DNAH8 Missense_Mutation p.E2756D 0.22 benign(0.016) TCGA-B1-A657-01 6 45515092 45515092 A T RUNX2 3'UTR 0.33 TCGA-B1-A657-01 6 53380907 53380907 C T GCLC Missense_Mutation p.S187N 0.22 deleterious(0.02) benign(0.016) TCGA-B1-A657-01 6 53380911 53380911 A G GCLC Missense_Mutation p.F186L 0.23 deleterious(0) probably_damaging(0.94) TCGA-B1-A657-01 6 71236101 71236101 A G FAM135A Missense_Mutation p.Y1105C 0.30 tolerated(0.12) benign(0.003) TCGA-B1-A657-01 7 108154603 108154603 T - PNPLA8 Frame_Shift_Del p.G398Efs*15 0.15 TCGA-B1-A657-01 7 11582721 11582721 A C THSD7A Missense_Mutation p.L493V 0.45 deleterious(0.03) benign(0.181) TCGA-B1-A657-01 7 132570441 132570442 - G CHCHD3 Frame_Shift_Ins p.L145Pfs*3 0.18 TCGA-B1-A657-01 7 152345944 152345944 G T XRCC2 Missense_Mutation p.P209H 0.19 tolerated(0.08) possibly_damaging(0.813) TCGA-B1-A657-01 7 193541 193541 C T FAM20C Silent p.A114A 0.57 TCGA-B1-A657-01 7 193561 193561 T A FAM20C Nonsense_Mutation p.L121* 0.52 TCGA-B1-A657-01 7 44621390 44621390 T G TMED4 Missense_Mutation p.K65Q 0.42 tolerated(0.37) benign(0.012) TCGA-B1-A657-01 7 6661545 6661545 A T ZNF853 Missense_Mutation p.Q308L 0.23 deleterious_low_confidence(0) unknown(0) TCGA-B1-A657-01 8 124154514 124154514 A T TBC1D31 Missense_Mutation p.N885Y 0.30 deleterious(0.01) benign(0.005) TCGA-B1-A657-01 8 139707081 139707081 C A COL22A1 Silent p.L878L 0.28 TCGA-B1-A657-01 8 144892982 144892982 A T SCRIB Missense_Mutation p.D426E 0.37 benign(0.014) TCGA-B1-A657-01 9 128723051 128723051 C T PBX3 Missense_Mutation p.T311M 0.24 tolerated(0.13) probably_damaging(0.921) TCGA-B1-A657-01 9 139734263 139734263 G A RABL6 Missense_Mutation p.D627N 0.38 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-B1-A657-01 9 37919918 37919918 C - SHB Frame_Shift_Del p.S477Mfs*30 0.18 TCGA-B1-A657-01 9 43815789 43815789 T C CNTNAP3B Silent p.S181S 0.12 TCGA-B1-A657-01 9 6007447 6007447 T C KIAA2026 Missense_Mutation p.E114G 0.37 deleterious(0.01) benign(0.06) TCGA-B1-A657-01 X 123515037 123515037 T G TENM1 Silent p.G2516G 0.80 TCGA-B1-A657-01 X 135098843 135098843 T A SLC9A6 Missense_Mutation p.F426I 0.56 deleterious(0) probably_damaging(0.998) TCGA-B1-A657-01 X 17819166 17819166 T G RAI2 Missense_Mutation p.K322T 0.05 deleterious(0) unknown(0) TCGA-B1-A657-01 X 48755416 48755416 C T TIMM17B 5'UTR 0.71 TCGA-B1-A657-01 X 70280928 70280928 G T SNX12 Missense_Mutation p.H143N 0.67 tolerated(0.27) probably_damaging(0.998) TCGA-B3-3925-01 10 100167696 100167696 A G PYROXD2 Missense_Mutation p.I69T 0.25 deleterious(0) benign(0.049) TCGA-B3-3925-01 10 105793764 105793764 A G COL17A1 Silent p.A1365A 0.28 TCGA-B3-3925-01 10 129859261 129859261 C A PTPRE Silent p.I190I 0.35 TCGA-B3-3925-01 10 135193909 135193909 C T PAOX Silent p.G196G 0.10 TCGA-B3-3925-01 10 98741324 98741326 TTT - C10orf12 In_Frame_Del p.L60del 0.38 TCGA-B3-3925-01 11 1215781 1215781 C T MUC5AC RNA 0.38 TCGA-B3-3925-01 11 128839901 128839901 T - ARHGAP32 Frame_Shift_Del p.N1722Tfs*5 0.32 TCGA-B3-3925-01 11 20139823 20139823 C - NAV2 3'UTR 0.20 TCGA-B3-3925-01 11 63129877 63129877 C T SLC22A10 3'UTR 0.29 TCGA-B3-3925-01 11 6453151 6453151 G C HPX Missense_Mutation p.A311G 0.34 deleterious(0) probably_damaging(0.993) TCGA-B3-3925-01 12 111321841 111321841 G C CCDC63 Missense_Mutation p.K287N 0.47 deleterious(0) probably_damaging(0.971) TCGA-B3-3925-01 12 121746455 121746458 TTCT - ANAPC5 Frame_Shift_Del p.K698Tfs*53 0.45 TCGA-B3-3925-01 12 121880611 121880611 C T KDM2B Missense_Mutation p.R878H 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.834) TCGA-B3-3925-01 12 21757442 21757442 G T GYS2 Missense_Mutation p.L29M 0.50 tolerated(0.08) benign(0.168) TCGA-B3-3925-01 12 58177005 58177005 C T TSFM Missense_Mutation p.T57I 0.28 deleterious(0) probably_damaging(1) TCGA-B3-3925-01 13 38154716 38154716 T G POSTN Missense_Mutation p.K504T 0.34 tolerated(0.29) benign(0.089) TCGA-B3-3925-01 13 61987658 61987658 A G PCDH20 Missense_Mutation p.F192L 0.08 tolerated(1) benign(0) TCGA-B3-3925-01 14 106791229 106791229 C T IGHV3-30 Missense_Mutation p.A43T 0.16 deleterious_low_confidence(0.03) benign(0.11) TCGA-B3-3925-01 14 23886422 23886422 C T MYH7 Missense_Mutation p.A1487T 0.29 deleterious(0.04) probably_damaging(0.955) TCGA-B3-3925-01 15 100332761 100332761 C A AC090825.1 3'Flank 0.12 TCGA-B3-3925-01 15 40594160 40594160 T A PLCB2 Nonsense_Mutation p.K194* 0.30 TCGA-B3-3925-01 15 40633079 40633079 A - C15orf52 Frame_Shift_Del p.F25Sfs*33 0.32 TCGA-B3-3925-01 15 51693835 51693835 G A GLDN Missense_Mutation p.G358D 0.40 tolerated(0.53) benign(0.02) TCGA-B3-3925-01 15 62221845 62221845 C G VPS13C Missense_Mutation p.K2047N 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-B3-3925-01 15 68497600 68497600 T G CALML4 Missense_Mutation p.S39R 0.34 tolerated(0.13) benign(0.025) TCGA-B3-3925-01 15 72192125 72192125 T G MYO9A Silent p.R1125R 0.38 TCGA-B3-3925-01 15 72432655 72432655 A G SENP8 3'UTR 0.31 TCGA-B3-3925-01 15 84581896 84581896 C T ADAMTSL3 Nonsense_Mutation p.Q585* 0.27 TCGA-B3-3925-01 16 18844471 18844471 G A SMG1 Silent p.F2861F 0.29 TCGA-B3-3925-01 16 30732089 30732089 C A SRCAP Missense_Mutation p.P1015T 0.35 unknown(0) TCGA-B3-3925-01 16 3641173 3641173 C G SLX4 Missense_Mutation p.M822I 0.27 tolerated(0.08) benign(0.007) TCGA-B3-3925-01 17 27045260 27045260 A C RAB34 Missense_Mutation p.L9W 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.521) TCGA-B3-3925-01 17 3953114 3953114 C T ZZEF1 Missense_Mutation p.G1968E 0.28 deleterious(0.05) benign(0.14) TCGA-B3-3925-01 17 40725220 40725220 C G MLX 3'UTR 0.08 TCGA-B3-3925-01 17 74283337 74283337 T A QRICH2 Missense_Mutation p.Q1150L 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-B3-3925-01 17 80888515 80888515 G C TBCD Missense_Mutation p.E1037Q 0.26 deleterious(0.01) benign(0.063) TCGA-B3-3925-01 18 44662721 44662721 T C HDHD2 Silent p.E30E 0.35 TCGA-B3-3925-01 18 47500737 47500737 C T MYO5B Silent p.G435G 0.36 TCGA-B3-3925-01 18 52555227 52555230 CCAA - RAB27B Frame_Shift_Del p.Q116Cfs*12 0.24 TCGA-B3-3925-01 18 59483063 59483063 A C RNF152 3'UTR 0.05 TCGA-B3-3925-01 19 40486339 40486339 T C PSMC4 Silent p.S355S 0.33 TCGA-B3-3925-01 19 46184876 46184876 C G GIPR Missense_Mutation p.S389R 0.31 deleterious(0) probably_damaging(0.923) TCGA-B3-3925-01 19 49261265 49261265 C A FGF21 Missense_Mutation p.H140N 0.35 deleterious(0.04) benign(0.388) TCGA-B3-3925-01 19 51633170 51633170 C G SIGLEC9 Intron 0.24 TCGA-B3-3925-01 19 6013026 6013026 C T RFX2 Missense_Mutation p.M290I 0.36 deleterious(0.04) benign(0.008) TCGA-B3-3925-01 1 104122036 104122036 G A AMY2B Missense_Mutation p.V484I 0.18 deleterious(0.02) benign(0.055) TCGA-B3-3925-01 1 113616063 113616063 A T LRIG2 Missense_Mutation p.Q12L 0.35 tolerated_low_confidence(0.2) benign(0) TCGA-B3-3925-01 1 155899153 155899153 C G KIAA0907 Missense_Mutation p.S133T 0.38 tolerated(0.07) benign(0.359) TCGA-B3-3925-01 1 161011569 161011569 T C USF1 Missense_Mutation p.H115R 0.08 tolerated(1) probably_damaging(0.95) TCGA-B3-3925-01 1 205238546 205238546 G T TMCC2 Missense_Mutation p.V406F 0.31 deleterious(0) probably_damaging(0.997) TCGA-B3-3925-01 1 243289920 243289920 C A CEP170 Missense_Mutation p.S1529I 0.38 deleterious_low_confidence(0.02) benign(0.275) TCGA-B3-3925-01 1 43917268 43917268 G A SZT2 3'UTR 0.41 TCGA-B3-3925-01 1 46745119 46745119 G - LRRC41 Intron 0.30 TCGA-B3-3925-01 1 79402059 79402059 T C ELTD1 Silent p.K266K 0.15 TCGA-B3-3925-01 20 18433281 18433281 C G DZANK1 Missense_Mutation p.R174T 0.19 tolerated(0.56) benign(0.232) TCGA-B3-3925-01 20 44757638 44757638 G C CD40 Missense_Mutation p.D265H 0.19 deleterious(0) probably_damaging(0.998) TCGA-B3-3925-01 20 47887763 47887763 T C ZNFX1 Missense_Mutation p.S196G 0.48 tolerated(0.1) benign(0.002) TCGA-B3-3925-01 21 46842430 46842430 C T COL18A1-AS1 RNA 0.78 TCGA-B3-3925-01 22 23438484 23438484 A G GNAZ Missense_Mutation p.D201G 0.29 deleterious(0) probably_damaging(0.999) TCGA-B3-3925-01 22 24447425 24447425 T A CABIN1 Silent p.I265I 0.44 TCGA-B3-3925-01 22 32193641 32193641 A T DEPDC5 Nonsense_Mutation p.K275* 0.44 TCGA-B3-3925-01 22 38374016 38374016 C T SOX10 Silent p.Q185Q 0.29 TCGA-B3-3925-01 22 45683306 45683306 A C UPK3A Silent p.A154A 0.33 TCGA-B3-3925-01 2 215440518 215440518 G T VWC2L Nonsense_Mutation p.E215* 0.30 TCGA-B3-3925-01 2 233681733 233681734 - AGGAAAC GIGYF2 Frame_Shift_Ins 0.15 TCGA-B3-3925-01 2 233681744 233681744 T A GIGYF2 Splice_Site p.X811_splice 0.26 TCGA-B3-3925-01 2 48050458 48050458 T G FBXO11 Silent p.A480A 0.33 TCGA-B3-3925-01 2 48808956 48808956 A G STON1-GTF2A1L Missense_Mutation p.E395G 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-B3-3925-01 2 86371415 86371415 T G IMMT Silent p.G751G 0.40 TCGA-B3-3925-01 3 113503595 113503595 C G ATP6V1A Missense_Mutation p.S160W 0.35 deleterious(0) possibly_damaging(0.841) TCGA-B3-3925-01 3 12633229 12633229 T A RAF1 Missense_Mutation p.R391W 0.30 deleterious(0) probably_damaging(0.99) TCGA-B3-3925-01 3 25646332 25646332 C A TOP2B Missense_Mutation p.D1465Y 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.645) TCGA-B3-3925-01 3 38835251 38835251 G A SCN10A Missense_Mutation p.P84L 0.30 deleterious(0) possibly_damaging(0.499) TCGA-B3-3925-01 3 50374858 50374858 A - RASSF1 Intron 0.34 TCGA-B3-3925-01 3 9798228 9798228 T AAA OGG1 Frame_Shift_Ins p.I274Kfs*112 0.40 TCGA-B3-3925-01 4 13370083 13370083 C G RAB28 3'UTR 0.38 TCGA-B3-3925-01 4 138450855 138450855 G A PCDH18 Silent p.H796H 0.45 TCGA-B3-3925-01 4 146041306 146041306 G A ABCE1 Splice_Site p.X382_splice 0.36 TCGA-B3-3925-01 4 71659564 71659564 A G RUFY3 Missense_Mutation p.D467G 0.34 deleterious(0.01) benign(0.423) TCGA-B3-3925-01 4 76532405 76532405 T C CDKL2 Silent p.R168R 0.36 TCGA-B3-3925-01 4 78532299 78532300 - A CXCL13 3'UTR 0.25 TCGA-B3-3925-01 4 90035227 90035227 G T TIGD2 Nonsense_Mutation p.E368* 0.29 TCGA-B3-3925-01 6 105825364 105825364 C G PREP Missense_Mutation p.V51L 0.34 tolerated(0.3) benign(0) TCGA-B3-3925-01 6 117622147 117622147 T G ROS1 Missense_Mutation p.E2241D 0.26 deleterious(0.03) benign(0.069) TCGA-B3-3925-01 6 150342042 150342042 T A RAET1L Silent p.G210G 0.36 TCGA-B3-3925-01 6 30115596 30115596 C T TRIM40 3'UTR 0.40 TCGA-B3-3925-01 6 30857025 30857025 G A DDR1 Missense_Mutation p.V79M 0.30 deleterious(0.01) probably_damaging(0.987) TCGA-B3-3925-01 6 43466697 43466697 C T TJAP1 Intron 0.50 TCGA-B3-3925-01 6 47591945 47591953 AGCTGTCCT - CD2AP In_Frame_Del p.A635_L637del 0.11 TCGA-B3-3925-01 7 100383746 100383746 G T ZAN Missense_Mutation p.S2320I 0.49 unknown(0) TCGA-B3-3925-01 7 100692247 100692247 G A MUC17 Silent p.T4219T 0.35 TCGA-B3-3925-01 7 123264837 123264837 C A ASB15 Missense_Mutation p.H222Q 0.41 deleterious(0.05) possibly_damaging(0.665) TCGA-B3-3925-01 7 141800677 141800677 T G MGAM Missense_Mutation p.D1754E 0.49 deleterious(0) benign(0.267) TCGA-B3-3925-01 7 75045841 75045841 A G POM121C 3'Flank 0.47 TCGA-B3-3925-01 7 99950204 99950204 G A PILRB 5'UTR 0.56 TCGA-B3-3925-01 8 121587444 121587444 G A SNTB1 Nonsense_Mutation p.Q340* 0.28 TCGA-B3-3925-01 8 144332048 144332048 C T ZFP41 Missense_Mutation p.P12L 0.26 tolerated(0.72) benign(0) TCGA-B3-3925-01 8 22022973 22022973 C A BMP1 Missense_Mutation p.P19T 0.26 tolerated_low_confidence(0.52) benign(0) TCGA-B3-3925-01 9 84608132 84608132 G A SPATA31D1 Nonsense_Mutation p.W916* 0.41 TCGA-B3-3925-01 X 16685795 16685795 A C CTPS2 Silent p.L414L 0.69 TCGA-B3-3925-01 X 3238719 3238719 A G MXRA5 Silent p.S1669S 0.75 TCGA-B3-3926-01 11 12951718 12951718 C T TEAD1 Intron 0.23 TCGA-B3-3926-01 14 24646579 24646579 G C REC8 Missense_Mutation p.A242P 0.47 tolerated(0.14) benign(0.003) TCGA-B3-3926-01 14 50319493 50319493 C A NEMF 5'UTR 0.24 TCGA-B3-3926-01 14 51132122 51132129 CTAGACTT - SAV1 Frame_Shift_Del p.R101Sfs*5 0.37 TCGA-B3-3926-01 17 16701804 16701804 C T CCDC144A 3'UTR 0.07 TCGA-B3-3926-01 17 60766323 60766323 T C MRC2 Splice_Site p.X1112_splice 0.19 TCGA-B3-3926-01 19 18685757 18685757 A T UBA52 Missense_Mutation p.N90Y 0.10 deleterious(0) possibly_damaging(0.876) TCGA-B3-3926-01 20 23029807 23029807 G A THBD Missense_Mutation p.T112M 0.29 deleterious(0) probably_damaging(1) TCGA-B3-3926-01 20 49557481 49557484 AAAC - DPM1 Intron 0.08 TCGA-B3-3926-01 2 179476553 179476553 G T TTN Missense_Mutation p.A16828D 0.39 TCGA-B3-3926-01 2 29432730 29432730 C G ALK Missense_Mutation p.R1253T 0.14 deleterious(0) probably_damaging(0.999) TCGA-B3-3926-01 3 129284750 129284750 C A PLXND1 Missense_Mutation p.K1434N 0.13 deleterious(0) probably_damaging(0.996) TCGA-B3-3926-01 3 170727776 170727776 G T SLC2A2 Missense_Mutation p.A156D 0.18 deleterious(0.01) possibly_damaging(0.493) TCGA-B3-3926-01 7 37960767 37960767 G T EPDR1 Missense_Mutation p.V76L 0.14 tolerated(0.28) benign(0.003) TCGA-B3-3926-01 7 5105227 5105227 C T RBAK Missense_Mutation p.L714F 0.24 tolerated_low_confidence(0.05) benign(0.007) TCGA-B3-3926-01 9 35733059 35733059 A G CREB3 Missense_Mutation p.I66V 0.49 tolerated(1) benign(0) TCGA-B3-4103-01 10 106075425 106075425 C T ITPRIP Missense_Mutation p.A129T 0.43 tolerated(0.41) benign(0.001) TCGA-B3-4103-01 10 15879212 15879212 T A FAM188A Missense_Mutation p.L189F 0.30 tolerated(0.2) possibly_damaging(0.815) TCGA-B3-4103-01 10 93593686 93593686 T C TNKS2 Missense_Mutation p.L451P 0.33 deleterious(0) probably_damaging(0.999) TCGA-B3-4103-01 11 119027678 119027678 G T ABCG4 Missense_Mutation p.S341I 0.34 tolerated(0.12) benign(0.001) TCGA-B3-4103-01 11 18955994 18955994 A T MRGPRX1 Missense_Mutation p.L113Q 0.04 deleterious(0) probably_damaging(0.998) TCGA-B3-4103-01 11 55371692 55371692 A T OR4C11 Missense_Mutation p.L53Q 0.33 deleterious(0) possibly_damaging(0.863) TCGA-B3-4103-01 12 122413567 122413567 T C WDR66 Silent p.I994I 0.35 TCGA-B3-4103-01 12 124497505 124497505 A - ZNF664 3'UTR 0.14 TCGA-B3-4103-01 12 56607850 56607850 A T RNF41 5'UTR 0.32 TCGA-B3-4103-01 14 105622266 105622266 T C JAG2 Missense_Mutation p.K179R 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-B3-4103-01 14 77274402 77274411 GAGTGAACTG - ANGEL1 Frame_Shift_Del p.Q244* 0.27 TCGA-B3-4103-01 15 100657190 100657190 C T ADAMTS17 Missense_Mutation p.G584S 0.38 deleterious(0.02) benign(0.329) TCGA-B3-4103-01 15 81648105 81648105 G A TMC3 Missense_Mutation p.A299V 0.31 deleterious(0.02) probably_damaging(0.98) TCGA-B3-4103-01 16 1608090 1608090 G T IFT140 Missense_Mutation p.H749N 0.27 tolerated(0.5) benign(0.005) TCGA-B3-4103-01 16 24551952 24551952 C G RBBP6 Missense_Mutation p.S2C 0.03 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-B3-4103-01 16 3073346 3073346 G C HCFC1R1 Missense_Mutation p.Q57E 0.03 deleterious_low_confidence(0.01) benign(0.242) TCGA-B3-4103-01 17 2604434 2604434 C T CLUH Missense_Mutation p.R304K 0.53 deleterious(0.01) possibly_damaging(0.589) TCGA-B3-4103-01 17 27370356 27370357 - G PIPOX Frame_Shift_Ins 0.41 TCGA-B3-4103-01 17 4084580 4084580 T C ANKFY1 Missense_Mutation p.N779D 0.03 tolerated(0.12) benign(0.034) TCGA-B3-4103-01 17 41143845 41143845 C A RUNDC1 3'UTR 0.48 TCGA-B3-4103-01 17 43364549 43364549 C T MAP3K14 RNA 0.23 TCGA-B3-4103-01 17 61562641 61562641 T C ACE Missense_Mutation p.Y656H 0.49 deleterious(0.05) benign(0.422) TCGA-B3-4103-01 17 7081872 7081872 T G ASGR1 Missense_Mutation p.E4A 0.45 tolerated(0.05) benign(0.169) TCGA-B3-4103-01 17 8170542 8170542 C T PFAS Missense_Mutation p.P1055L 0.31 tolerated(0.52) benign(0.001) TCGA-B3-4103-01 18 61058289 61058289 T C VPS4B Silent p.L418L 0.12 TCGA-B3-4103-01 19 10230530 10230530 A G EIF3G Silent p.P2P 0.25 TCGA-B3-4103-01 19 11728624 11728624 G T ZNF627 Missense_Mutation p.V436L 0.25 tolerated(0.7) benign(0) TCGA-B3-4103-01 19 1428875 1428875 A G DAZAP1 Missense_Mutation p.K194R 0.27 tolerated(0.19) unknown(0) TCGA-B3-4103-01 19 3979985 3979985 C T EEF2 Missense_Mutation p.D476N 0.29 deleterious(0) probably_damaging(1) TCGA-B3-4103-01 19 41928188 41928188 C G BCKDHA Missense_Mutation p.L256V 0.23 deleterious(0.04) possibly_damaging(0.539) TCGA-B3-4103-01 19 8182139 8182139 T - FBN3 Frame_Shift_Del p.D1167Afs*21 0.18 TCGA-B3-4103-01 1 113616165 113616165 C A LRIG2 Missense_Mutation p.P46H 0.19 deleterious(0.05) benign(0.002) TCGA-B3-4103-01 1 116941400 116941400 G C ATP1A1 Missense_Mutation p.G761A 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-B3-4103-01 1 152884123 152884123 G A IVL 3'UTR 0.37 TCGA-B3-4103-01 1 169096584 169096584 T C ATP1B1 Missense_Mutation p.Y169H 0.31 deleterious(0) probably_damaging(0.999) TCGA-B3-4103-01 1 169698749 169698749 T - SELE Frame_Shift_Del p.S261Afs*18 0.34 TCGA-B3-4103-01 1 179965912 179965912 A - CEP350 Frame_Shift_Del p.N208Ifs*5 0.19 TCGA-B3-4103-01 1 204183026 204183026 G T GOLT1A Silent p.S3S 0.19 TCGA-B3-4103-01 21 35467607 35467607 G A SLC5A3 Missense_Mutation p.S37N 0.35 tolerated(0.07) benign(0.023) TCGA-B3-4103-01 22 24581140 24581140 C A SUSD2 Silent p.A287A 0.29 TCGA-B3-4103-01 22 41574679 41574681 CCC - EP300 In_Frame_Del p.P2323del 0.41 TCGA-B3-4103-01 22 43442517 43442517 C G TTLL1 Silent p.L347L 0.04 TCGA-B3-4103-01 2 10101557 10101557 G A GRHL1 Missense_Mutation p.V221I 0.30 tolerated(0.25) benign(0.263) TCGA-B3-4103-01 2 120194829 120194829 T C TMEM37 Missense_Mutation p.I129T 0.27 tolerated(0.36) benign(0.076) TCGA-B3-4103-01 2 163241347 163241347 A G KCNH7 Missense_Mutation p.I938T 0.31 tolerated(0.46) benign(0.001) TCGA-B3-4103-01 2 220101734 220101734 C T GLB1L 3'UTR 0.45 TCGA-B3-4103-01 3 124515613 124515613 C A ITGB5 Nonsense_Mutation p.E439* 0.22 TCGA-B3-4103-01 3 124515614 124515614 C T ITGB5 Silent p.T438T 0.23 TCGA-B3-4103-01 3 127299009 127299009 G C TPRA1 Intron 0.15 TCGA-B3-4103-01 3 195974373 195974373 G A PCYT1A Silent p.L117L 0.25 TCGA-B3-4103-01 3 196387840 196387840 C T NRROS Silent p.P442P 0.42 TCGA-B3-4103-01 4 56301654 56301654 A T CLOCK Silent p.S823S 0.32 TCGA-B3-4103-01 4 69978199 69978199 A G UGT2B7 Silent p.L445L 0.26 TCGA-B3-4103-01 4 86921691 86921691 A G ARHGAP24 Missense_Mutation p.D688G 0.43 deleterious(0) benign(0.437) TCGA-B3-4103-01 4 96025660 96025660 G A BMPR1B Missense_Mutation p.V59I 0.32 tolerated(0.4) benign(0) TCGA-B3-4103-01 5 128956361 128956361 A G ADAMTS19 Missense_Mutation p.H504R 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-B3-4103-01 5 161576298 161576298 A T GABRG2 Missense_Mutation p.K409N 0.32 tolerated(0.07) possibly_damaging(0.767) TCGA-B3-4103-01 6 56499603 56499603 A C DST Missense_Mutation p.I575S 0.32 probably_damaging(0.999) TCGA-B3-4103-01 6 71234676 71234676 T A FAM135A Missense_Mutation p.M630K 0.40 tolerated(0.37) benign(0.01) TCGA-B3-4103-01 7 117364734 117364734 T A CTTNBP2 Silent p.I1438I 0.29 TCGA-B3-4103-01 7 117396642 117396642 G A CTTNBP2 Silent p.I1105I 0.04 TCGA-B3-4103-01 7 127229193 127229193 A G ARF5 Missense_Mutation p.I42V 0.36 tolerated_low_confidence(0.49) benign(0.024) TCGA-B3-4103-01 7 149422542 149422542 G C KRBA1 Missense_Mutation p.Q421H 0.07 deleterious(0.02) probably_damaging(0.977) TCGA-B3-4103-01 7 99700326 99700326 T C AP4M1 Missense_Mutation p.I59T 0.21 deleterious(0.03) possibly_damaging(0.824) TCGA-B3-4103-01 8 107782408 107782408 C A ABRA Missense_Mutation p.G4V 0.21 deleterious_low_confidence(0.04) probably_damaging(0.956) TCGA-B3-4103-01 8 121455496 121455496 G A MRPL13 Missense_Mutation p.P27L 0.31 deleterious(0.03) probably_damaging(1) TCGA-B3-4103-01 8 125580583 125580583 A T MTSS1 Intron 0.31 TCGA-B3-4103-01 8 145690192 145690192 C G CYHR1 Missense_Mutation p.E31D 0.36 tolerated_low_confidence(0.07) benign(0) TCGA-B3-4103-01 9 116267710 116267710 G T RGS3 Intron 0.32 TCGA-B3-4103-01 9 117666220 117666220 A C TNFSF8 Missense_Mutation p.N232K 0.30 tolerated(0.13) benign(0.005) TCGA-B3-4103-01 9 14824065 14824065 T G FREM1 Silent p.V709V 0.22 TCGA-B3-4104-01 10 21309109 21309109 G A NEBL Silent p.F28F 0.05 TCGA-B3-4104-01 10 52071078 52071078 T C SGMS1 Missense_Mutation p.Y280C 0.45 deleterious(0) probably_damaging(0.992) TCGA-B3-4104-01 10 94297234 94297234 G C IDE Missense_Mutation p.P58A 0.41 tolerated(0.56) benign(0.001) TCGA-B3-4104-01 11 209483 209483 T A RIC8A Missense_Mutation p.V70D 0.22 deleterious(0) possibly_damaging(0.828) TCGA-B3-4104-01 11 55418712 55418712 C T OR4S2 Silent p.F111F 0.03 TCGA-B3-4104-01 11 57004337 57004337 G C APLNR Missense_Mutation p.L48V 0.46 tolerated(0.29) possibly_damaging(0.557) TCGA-B3-4104-01 11 60540926 60540926 T A MS4A15 Missense_Mutation p.I156N 0.56 deleterious(0) probably_damaging(0.939) TCGA-B3-4104-01 11 61026184 61026184 G A VWCE Missense_Mutation p.P944L 0.30 tolerated_low_confidence(0.12) benign(0) TCGA-B3-4104-01 11 67207603 67207603 C - CORO1B Frame_Shift_Del p.K331Nfs*20 0.37 TCGA-B3-4104-01 11 72470333 72470333 C G STARD10 Missense_Mutation p.E101Q 0.50 deleterious(0.03) probably_damaging(0.93) TCGA-B3-4104-01 11 74985127 74985127 G C ARRB1 Missense_Mutation p.S302C 0.45 deleterious(0) benign(0.263) TCGA-B3-4104-01 12 110788001 110788001 C A ATP2A2 3'Flank 0.45 TCGA-B3-4104-01 12 29486774 29486774 A - FAR2 3'UTR 0.34 TCGA-B3-4104-01 12 48142257 48142257 G A RAPGEF3 Missense_Mutation p.S408F 0.36 deleterious(0.02) benign(0.403) TCGA-B3-4104-01 12 49425839 49425839 G A KMT2D Nonsense_Mutation p.Q4217* 0.42 TCGA-B3-4104-01 12 49426526 49426526 G A KMT2D Nonsense_Mutation p.Q3988* 0.48 TCGA-B3-4104-01 14 36005048 36005048 C T INSM2 Silent p.C530C 0.20 TCGA-B3-4104-01 14 45603575 45603575 G A FKBP3 Silent p.L29L 0.33 TCGA-B3-4104-01 14 69256349 69256349 C G ZFP36L1 Silent p.L306L 0.42 TCGA-B3-4104-01 14 74325603 74325603 G T PTGR2 Splice_Site p.X13_splice 0.04 TCGA-B3-4104-01 14 75514890 75514890 G C MLH3 Missense_Mutation p.S490C 0.38 tolerated(0.08) benign(0.014) TCGA-B3-4104-01 15 25296712 25296712 G C SNORD116-1 RNA 0.46 TCGA-B3-4104-01 15 26793190 26793190 G C GABRB3 Nonsense_Mutation p.S391* 0.46 TCGA-B3-4104-01 15 51857284 51857284 C A DMXL2 Splice_Site p.X122_splice 0.43 TCGA-B3-4104-01 16 74990405 74990405 G A WDR59 Missense_Mutation p.H70Y 0.35 deleterious(0.04) probably_damaging(0.998) TCGA-B3-4104-01 16 85010706 85010706 C T ZDHHC7 Missense_Mutation p.E286K 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-B3-4104-01 17 3659152 3659152 A T ITGAE Missense_Mutation p.I404N 0.50 deleterious(0.03) benign(0.391) TCGA-B3-4104-01 17 39659037 39659037 T A KRT13 Missense_Mutation p.T309S 0.45 tolerated(0.92) benign(0.084) TCGA-B3-4104-01 17 42828063 42828063 C T DBF4B Silent p.L430L 0.48 TCGA-B3-4104-01 17 48615544 48615544 G A EPN3 Missense_Mutation p.E223K 0.63 deleterious(0) probably_damaging(1) TCGA-B3-4104-01 17 48616322 48616322 G C EPN3 Missense_Mutation p.E253D 0.50 tolerated(0.05) benign(0.011) TCGA-B3-4104-01 17 48628090 48628090 G A SPATA20 Missense_Mutation p.E399K 0.45 deleterious(0) probably_damaging(0.985) TCGA-B3-4104-01 17 48628385 48628385 G A SPATA20 Silent p.Q470Q 0.46 TCGA-B3-4104-01 17 48628557 48628557 G A SPATA20 Intron 0.58 TCGA-B3-4104-01 17 48628568 48628568 G A SPATA20 Intron 0.58 TCGA-B3-4104-01 17 62238165 62238165 C G TEX2 Missense_Mutation p.E941Q 0.69 deleterious(0.04) possibly_damaging(0.888) TCGA-B3-4104-01 17 65026963 65026963 T C CACNG4 Missense_Mutation p.M276T 0.19 deleterious(0) possibly_damaging(0.71) TCGA-B3-4104-01 17 7579415 7579415 C T TP53 Nonsense_Mutation p.W91* 0.16 TCGA-B3-4104-01 17 79249777 79249777 C T SLC38A10 Missense_Mutation p.E302K 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-B3-4104-01 18 28660162 28660162 G C DSC2 Missense_Mutation p.P474A 0.53 tolerated(0.7) benign(0.002) TCGA-B3-4104-01 19 18279617 18279617 G A PIK3R2 Silent p.T630T 0.43 TCGA-B3-4104-01 19 50099849 50099849 G A PRR12 Missense_Mutation p.A753T 0.31 possibly_damaging(0.695) TCGA-B3-4104-01 19 757669 757669 C T MISP Silent p.N241N 0.52 TCGA-B3-4104-01 1 113126670 113126670 T C ST7L Silent p.A260A 0.47 TCGA-B3-4104-01 1 116931284 116931284 G A ATP1A1 Missense_Mutation p.E176K 0.39 tolerated(0.26) benign(0.124) TCGA-B3-4104-01 1 12854436 12854436 G C PRAMEF1 Silent p.L220L 0.45 TCGA-B3-4104-01 1 1334456 1334456 G A CCNL2 Silent p.L77L 0.37 TCGA-B3-4104-01 1 1334592 1334592 G A CCNL2 Missense_Mutation p.S32L 0.47 tolerated(0.06) unknown(0) TCGA-B3-4104-01 1 148025786 148025786 G A NBPF14 Nonsense_Mutation p.Q22* 0.21 TCGA-B3-4104-01 1 148025829 148025829 C T NBPF14 Missense_Mutation p.M7I 0.21 tolerated(0.06) benign(0.039) TCGA-B3-4104-01 1 154493835 154493835 G A TDRD10 Silent p.V83V 0.09 TCGA-B3-4104-01 1 180849312 180849312 G C XPR1 Missense_Mutation p.D637H 0.49 deleterious(0.02) probably_damaging(0.914) TCGA-B3-4104-01 1 205888030 205888030 C T SLC26A9 Missense_Mutation p.D732N 0.46 deleterious(0) probably_damaging(1) TCGA-B3-4104-01 1 36748232 36748232 G A THRAP3 Missense_Mutation p.R23H 0.45 deleterious_low_confidence(0) unknown(0) TCGA-B3-4104-01 1 39910503 39910503 G C MACF1 Missense_Mutation p.R4475T 0.45 possibly_damaging(0.753) TCGA-B3-4104-01 1 6528353 6528353 C T PLEKHG5 Missense_Mutation p.R927Q 0.43 tolerated(1) benign(0.001) TCGA-B3-4104-01 20 2775058 2775058 C A CPXM1 Missense_Mutation p.W661C 0.22 deleterious(0) probably_damaging(1) TCGA-B3-4104-01 20 56090811 56090811 C G CTCFL Missense_Mutation p.R380T 0.44 deleterious(0.02) benign(0.11) TCGA-B3-4104-01 20 62407208 62407208 G A ZBTB46 Silent p.L349L 0.47 TCGA-B3-4104-01 22 38470965 38470965 C G PICK1 Missense_Mutation p.F358L 0.33 deleterious(0.01) possibly_damaging(0.799) TCGA-B3-4104-01 22 40814967 40814967 G A MKL1 Missense_Mutation p.S492L 0.17 deleterious(0) probably_damaging(0.945) TCGA-B3-4104-01 22 44564537 44564537 C T PARVB Silent p.T391T 0.11 TCGA-B3-4104-01 22 46930992 46930992 G A CELSR1 Silent p.Y692Y 0.26 TCGA-B3-4104-01 2 100623250 100623250 G A AFF3 Silent p.D264D 0.43 TCGA-B3-4104-01 2 110065844 110065844 G A SH3RF3 Missense_Mutation p.A683T 0.07 tolerated(0.17) benign(0.029) TCGA-B3-4104-01 2 130868165 130868165 G C POTEF Missense_Mutation p.L336V 0.07 tolerated_low_confidence(0.34) benign(0.068) TCGA-B3-4104-01 2 152397247 152397247 C T NEB Silent p.L6917L 0.05 TCGA-B3-4104-01 2 183387116 183387116 A C PDE1A 5'UTR 0.06 TCGA-B3-4104-01 2 219886640 219886640 C T CCDC108 Missense_Mutation p.E998K 0.57 tolerated(0.14) benign(0.029) TCGA-B3-4104-01 2 25057766 25057766 G A ADCY3 Missense_Mutation p.R568C 0.06 tolerated(0.09) possibly_damaging(0.453) TCGA-B3-4104-01 2 67631299 67631299 A G ETAA1 Silent p.Q495Q 0.51 TCGA-B3-4104-01 2 73302579 73302579 G C RAB11FIP5 3'UTR 0.43 TCGA-B3-4104-01 3 130287049 130287049 G A COL6A6 Missense_Mutation p.D668N 0.46 tolerated(0.26) benign(0.237) TCGA-B3-4104-01 3 19925989 19925989 G C EFHB Silent p.L684L 0.45 TCGA-B3-4104-01 3 9547649 9547649 G A LHFPL4 Splice_Site p.X215_splice 0.46 TCGA-B3-4104-01 4 122722582 122722582 G A EXOSC9 Translation_Start_Site p.M1? 0.40 deleterious(0.01) probably_damaging(0.974) TCGA-B3-4104-01 4 124011731 124011731 C T SPATA5 Intron 0.52 TCGA-B3-4104-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.43 deleterious(0.01) possibly_damaging(0.594) TCGA-B3-4104-01 4 1803584 1803584 C A FGFR3 Silent p.I254I 0.41 TCGA-B3-4104-01 4 1803749 1803749 C T FGFR3 Silent p.L309L 0.30 TCGA-B3-4104-01 4 189068521 189068521 G A TRIML1 Missense_Mutation p.V468I 0.46 tolerated_low_confidence(0.24) benign(0.001) TCGA-B3-4104-01 4 247622 247622 G A ZNF876P RNA 0.18 TCGA-B3-4104-01 4 96127913 96127913 G T UNC5C Missense_Mutation p.P590T 0.17 deleterious(0.02) possibly_damaging(0.615) TCGA-B3-4104-01 5 140725009 140725009 C T PCDHGA3 Missense_Mutation p.S470F 0.47 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-B3-4104-01 5 140811015 140811015 T C PCDHGA12 Missense_Mutation p.V230A 0.43 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-B3-4104-01 5 157240138 157240138 C G CLINT1 Missense_Mutation p.K150N 0.48 deleterious(0) probably_damaging(0.941) TCGA-B3-4104-01 5 180048230 180048230 C T FLT4 Silent p.T681T 0.49 TCGA-B3-4104-01 5 41870488 41870488 G A OXCT1 5'UTR 0.38 TCGA-B3-4104-01 5 76749713 76749713 C A WDR41 Missense_Mutation p.G151V 0.04 deleterious(0.04) probably_damaging(0.987) TCGA-B3-4104-01 6 109763791 109763791 C - SMPD2 Frame_Shift_Del p.R152Vfs*40 0.37 TCGA-B3-4104-01 6 29274483 29274483 C T OR14J1 Missense_Mutation p.S6L 0.39 tolerated(0.11) benign(0.02) TCGA-B3-4104-01 6 32945959 32945959 C G BRD2 Silent p.P545P 0.40 TCGA-B3-4104-01 6 32947799 32947799 C G BRD2 Nonsense_Mutation p.S714* 0.44 TCGA-B3-4104-01 7 136700056 136700056 G T CHRM2 Missense_Mutation p.W148C 0.19 deleterious(0) probably_damaging(0.999) TCGA-B3-4104-01 7 151372582 151372582 C G PRKAG2 Missense_Mutation p.R203T 0.44 deleterious(0) probably_damaging(0.917) TCGA-B3-4104-01 7 151879016 151879016 G A KMT2C Nonsense_Mutation p.Q1977* 0.16 TCGA-B3-4104-01 7 20199090 20199090 C A MACC1 Missense_Mutation p.K298N 0.18 tolerated(0.49) benign(0.209) TCGA-B3-4104-01 8 27288656 27288656 C A PTK2B Intron 0.09 TCGA-B3-4104-01 8 37597912 37597912 G A ERLIN2 Missense_Mutation p.G46D 0.05 tolerated(0.28) possibly_damaging(0.836) TCGA-B3-4104-01 8 53028901 53028901 C T ST18 Silent p.L979L 0.39 TCGA-B3-4104-01 8 53028912 53028912 C T ST18 Missense_Mutation p.E976K 0.37 deleterious(0) benign(0.345) TCGA-B3-4104-01 9 12704628 12704628 C A TYRP1 Missense_Mutation p.P395Q 0.29 deleterious(0) probably_damaging(1) TCGA-B3-4104-01 9 2651933 2651933 G A VLDLR Missense_Mutation p.A799T 0.28 tolerated(0.48) benign(0.356) TCGA-B3-4104-01 9 34397497 34397497 C T C9orf24 Silent p.P45P 0.29 TCGA-B3-4104-01 9 38396007 38396007 C T ALDH1B1 Missense_Mutation p.R88C 0.07 tolerated(0.11) benign(0) TCGA-B3-4104-01 X 123176469 123176469 C T STAG2 Nonsense_Mutation p.R146* 0.88 TCGA-B3-4104-01 X 155232601 155232601 G A IL9R Missense_Mutation p.R20Q 0.35 tolerated(0.55) benign(0.016) TCGA-B3-8121-01 10 49365382 49365382 A G FRMPD2 Missense_Mutation p.S1305P 0.14 tolerated_low_confidence(0.2) benign(0.004) TCGA-B3-8121-01 10 91152442 91152442 C T IFIT1 5'UTR 0.10 TCGA-B3-8121-01 11 5373425 5373425 G A OR51B6 Missense_Mutation p.G230R 0.05 tolerated(0.09) benign(0.009) TCGA-B3-8121-01 11 88911048 88911048 A G TYR 5'UTR 0.24 TCGA-B3-8121-01 12 110385121 110385127 TGGGAGA - GIT2 Frame_Shift_Del p.Y525* 0.18 TCGA-B3-8121-01 12 131359114 131359114 G A RAN Missense_Mutation p.D91N 0.18 deleterious(0.01) possibly_damaging(0.791) TCGA-B3-8121-01 12 30888129 30888129 C T CAPRIN2 Silent p.A194A 0.05 TCGA-B3-8121-01 14 22509285 22509285 G A TRAV20 Missense_Mutation p.G75R 0.18 tolerated(0.52) possibly_damaging(0.649) TCGA-B3-8121-01 14 77765102 77765102 G A POMT2 Silent p.D312D 0.19 TCGA-B3-8121-01 15 30008820 30008820 A G TJP1 Silent p.S1399S 0.10 TCGA-B3-8121-01 15 30065529 30065529 G T TJP1 Missense_Mutation p.S39Y 0.18 deleterious(0) probably_damaging(1) TCGA-B3-8121-01 17 3801065 3801065 T G P2RX1 3'UTR 0.21 TCGA-B3-8121-01 17 60484528 60484528 T C EFCAB3 Silent p.H326H 0.10 TCGA-B3-8121-01 17 71231747 71231747 T G C17orf80 Nonsense_Mutation p.Y42* 0.13 TCGA-B3-8121-01 18 30350134 30350134 A C KLHL14 Missense_Mutation p.Y141D 0.19 deleterious(0) benign(0.292) TCGA-B3-8121-01 18 43671697 43671697 A G ATP5A1 Missense_Mutation p.L87P 0.25 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-B3-8121-01 19 33132944 33132944 G A ANKRD27 Missense_Mutation p.S297F 0.26 deleterious(0.03) possibly_damaging(0.788) TCGA-B3-8121-01 19 54819027 54819027 G A LILRA5 Missense_Mutation p.A240V 0.20 tolerated(0.14) benign(0.033) TCGA-B3-8121-01 1 112002161 112002161 A G ATP5F1 Missense_Mutation p.Y199C 0.14 deleterious(0) probably_damaging(1) TCGA-B3-8121-01 1 113460277 113460277 G A SLC16A1 Nonsense_Mutation p.Q251* 0.20 TCGA-B3-8121-01 1 120906086 120906086 C G RP11-439A17.4 5'Flank 0.10 TCGA-B3-8121-01 1 153631989 153631989 C G SNAPIN Missense_Mutation p.L86V 0.14 tolerated(0.4) benign(0.022) TCGA-B3-8121-01 1 17395526 17395526 G A PADI2 3'UTR 0.21 TCGA-B3-8121-01 1 33292114 33292114 A - S100PBP Frame_Shift_Del p.L139* 0.15 TCGA-B3-8121-01 20 32345059 32345060 - C ZNF341 Frame_Shift_Ins p.S284Qfs*11 0.26 TCGA-B3-8121-01 22 45574449 45574449 T - NUP50 Frame_Shift_Del p.F225Lfs*40 0.15 TCGA-B3-8121-01 2 113418129 113418129 G A SLC20A1 Silent p.L591L 0.24 TCGA-B3-8121-01 2 219510938 219510938 C A ZNF142 Missense_Mutation p.K469N 0.22 deleterious(0) benign(0.403) TCGA-B3-8121-01 2 32475306 32475306 G C NLRC4 Missense_Mutation p.Q543E 0.20 tolerated(0.54) benign(0.094) TCGA-B3-8121-01 2 32475307 32475307 C T NLRC4 Silent p.E542E 0.20 TCGA-B3-8121-01 3 149678840 149678840 C T RNF13 Silent p.V365V 0.21 TCGA-B3-8121-01 3 46944260 46944260 T C PTH1R Missense_Mutation p.Y459H 0.07 deleterious(0) probably_damaging(0.999) TCGA-B3-8121-01 5 5235247 5235247 C G ADAMTS16 Missense_Mutation p.S657R 0.12 tolerated(0.15) benign(0.046) TCGA-B3-8121-01 5 82850838 82850838 G A VCAN Nonsense_Mutation p.W3239* 0.12 TCGA-B3-8121-01 5 837562 837562 A C ZDHHC11 Missense_Mutation p.I273S 0.13 tolerated(0.21) benign(0.326) TCGA-B3-8121-01 6 24528249 24528249 G A ALDH5A1 Missense_Mutation p.V413I 0.20 tolerated(0.23) benign(0.001) TCGA-B3-8121-01 6 26027471 26027471 G C HIST1H4B Missense_Mutation p.R4G 0.16 tolerated_low_confidence(0.06) benign(0.011) TCGA-B3-8121-01 6 51924820 51924820 A C PKHD1 Missense_Mutation p.F380C 0.26 deleterious(0) probably_damaging(0.999) TCGA-B3-8121-01 6 73905126 73905126 A G KCNQ5 Missense_Mutation p.K949E 0.15 deleterious_low_confidence(0.04) benign(0.231) TCGA-B3-8121-01 6 88231239 88231239 A T RARS2 Missense_Mutation p.D326E 0.21 deleterious(0) probably_damaging(0.955) TCGA-B3-8121-01 7 100465513 100465514 - C TRIP6 Frame_Shift_Ins p.L49Pfs*4 0.22 TCGA-B3-8121-01 7 45932569 45932569 C - IGFBP1 Frame_Shift_Del p.M221Wfs*43 0.09 TCGA-B3-8121-01 7 91753101 91753108 CTGTCTGC A CYP51A1 Frame_Shift_Del p.R277Lfs*14 0.35 TCGA-B3-8121-01 9 80866948 80866948 A - CEP78 Frame_Shift_Del p.R401Dfs*7 0.26 TCGA-B3-8121-01 X 100542647 100542647 A C TAF7L Intron 0.27 TCGA-B3-8121-01 X 53589174 53589174 C T HUWE1 Silent p.E2412E 0.26 TCGA-B3-A6W5-01 11 121174116 121174116 A T SC5D Missense_Mutation p.Y11F 0.33 tolerated(0.12) benign(0.009) TCGA-B3-A6W5-01 11 281566 281566 A G NLRP6 Missense_Mutation p.E611G 0.09 deleterious(0.05) possibly_damaging(0.717) TCGA-B3-A6W5-01 12 122618155 122618155 A G MLXIP Silent p.P451P 0.04 TCGA-B3-A6W5-01 12 42853462 42853462 T A PRICKLE1 3'UTR 0.45 TCGA-B3-A6W5-01 12 54366963 54366963 A G HOXC11 5'UTR 0.48 TCGA-B3-A6W5-01 13 103343200 103343200 T A METTL21C Missense_Mutation p.E82V 0.48 deleterious(0) possibly_damaging(0.876) TCGA-B3-A6W5-01 14 91691191 91691191 G T C14orf159 3'UTR 0.06 TCGA-B3-A6W5-01 15 88576204 88576204 G T NTRK3 Missense_Mutation p.T490K 0.35 deleterious(0.04) possibly_damaging(0.828) TCGA-B3-A6W5-01 17 62496733 62496733 C G DDX5 Missense_Mutation p.V459L 0.26 deleterious(0.03) possibly_damaging(0.829) TCGA-B3-A6W5-01 17 72367881 72367881 C T GPR142 Silent p.T177T 0.18 TCGA-B3-A6W5-01 17 73654500 73654500 A G RECQL5 Missense_Mutation p.Y343H 0.31 deleterious(0) probably_damaging(0.998) TCGA-B3-A6W5-01 18 59167691 59167691 G T CDH20 Missense_Mutation p.S206I 0.10 deleterious(0.02) benign(0.303) TCGA-B3-A6W5-01 19 22272080 22272084 ACTGG - ZNF257 Frame_Shift_Del p.T510Rfs*7 0.30 TCGA-B3-A6W5-01 19 42314872 42314872 G A CEACAM3 Missense_Mutation p.M210I 0.42 tolerated(0.59) benign(0.022) TCGA-B3-A6W5-01 19 51301931 51301931 A T C19orf48 5'UTR 0.37 TCGA-B3-A6W5-01 19 53995342 53995342 A G ZNF813 3'UTR 0.36 TCGA-B3-A6W5-01 1 109801145 109801145 G A CELSR2 Silent p.E1134E 0.34 TCGA-B3-A6W5-01 1 114397574 114397574 C T PTPN22 Missense_Mutation p.R213H 0.49 deleterious(0.03) possibly_damaging(0.461) TCGA-B3-A6W5-01 1 115453123 115453123 G A SYCP1 Splice_Site p.X475_splice 0.33 TCGA-B3-A6W5-01 1 167829047 167829047 G T ADCY10 Missense_Mutation p.L632M 0.07 tolerated(0.13) benign(0.007) TCGA-B3-A6W5-01 1 220345388 220345388 G A RAB3GAP2 Missense_Mutation p.A807V 0.27 deleterious(0.03) benign(0.122) TCGA-B3-A6W5-01 1 228468061 228468061 A G OBSCN Silent p.V3044V 0.37 TCGA-B3-A6W5-01 1 33790580 33790580 G C PHC2 Missense_Mutation p.I821M 0.40 deleterious(0) probably_damaging(1) TCGA-B3-A6W5-01 1 44035436 44035436 G T PTPRF Missense_Mutation p.K185N 0.35 deleterious(0) probably_damaging(1) TCGA-B3-A6W5-01 21 28213400 28213400 G A ADAMTS1 Missense_Mutation p.S432L 0.40 deleterious(0) probably_damaging(0.999) TCGA-B3-A6W5-01 21 39671219 39671219 C A KCNJ15 Silent p.P12P 0.34 TCGA-B3-A6W5-01 21 40555300 40555300 C T PSMG1 Silent p.T4T 0.37 TCGA-B3-A6W5-01 22 42274013 42274013 C T SREBF2 Silent p.V549V 0.39 TCGA-B3-A6W5-01 2 131332081 131332081 C A AC140481.2 Missense_Mutation p.D52E 0.14 tolerated(0.56) benign(0.137) TCGA-B3-A6W5-01 2 216269139 216269139 G A FN1 Missense_Mutation p.P1076S 0.28 tolerated(0.21) benign(0.039) TCGA-B3-A6W5-01 2 228172490 228172490 A C COL4A3 Silent p.A1439A 0.55 TCGA-B3-A6W5-01 2 44541326 44541326 A G SLC3A1 Intron 0.48 TCGA-B3-A6W5-01 2 96950320 96950340 ATACCTGGCGGGCAGAGGAGG - SNRNP200 Splice_Site p.X1389_splice 0.49 TCGA-B3-A6W5-01 2 97400231 97400231 C T LMAN2L Silent p.V113V 0.59 TCGA-B3-A6W5-01 4 186318028 186318028 C T ANKRD37 5'UTR 0.36 TCGA-B3-A6W5-01 4 6718786 6718786 G A BLOC1S4 3'UTR 0.26 TCGA-B3-A6W5-01 4 6882582 6882582 C T KIAA0232 Silent p.R1359R 0.38 TCGA-B3-A6W5-01 4 8238155 8238155 G C SH3TC1 Missense_Mutation p.G1186R 0.34 deleterious(0) probably_damaging(0.997) TCGA-B3-A6W5-01 4 86491717 86491717 C T ARHGAP24 Missense_Mutation p.T8M 0.46 tolerated(0.16) benign(0.067) TCGA-B3-A6W5-01 5 137728920 137728920 C T KDM3B Missense_Mutation p.P897L 0.51 deleterious(0.02) possibly_damaging(0.694) TCGA-B3-A6W5-01 5 36152268 36152268 G A SKP2 5'UTR 0.24 TCGA-B3-A6W5-01 5 60839459 60839459 C T ZSWIM6 Missense_Mutation p.A988V 0.49 deleterious(0) probably_damaging(0.994) TCGA-B3-A6W5-01 5 66479374 66479374 G T CD180 Missense_Mutation p.H433N 0.37 tolerated(0.17) benign(0.005) TCGA-B3-A6W5-01 5 78407670 78407670 T C BHMT 5'UTR 0.39 TCGA-B3-A6W5-01 6 97702477 97702477 C T MMS22L Missense_Mutation p.A359T 0.37 deleterious(0.03) probably_damaging(0.995) TCGA-B3-A6W5-01 7 100028947 100028947 G C MEPCE Missense_Mutation p.V436L 0.37 tolerated(0.28) benign(0.064) TCGA-B3-A6W5-01 7 154760427 154760427 T A PAXIP1 Missense_Mutation p.H495L 0.39 tolerated_low_confidence(0.11) unknown(0) TCGA-B3-A6W5-01 7 2671817 2671817 T C TTYH3 Missense_Mutation p.W10R 0.39 deleterious(0) possibly_damaging(0.736) TCGA-B3-A6W5-01 7 66103373 66103373 G A KCTD7 Missense_Mutation p.E150K 0.27 deleterious(0) probably_damaging(0.919) TCGA-B3-A6W5-01 8 143833924 143833924 A T LYPD2 5'UTR 0.46 TCGA-B3-A6W5-01 8 71040937 71040937 C T NCOA2 Silent p.Q1201Q 0.33 TCGA-B3-A6W5-01 9 109736499 109736500 CC - ZNF462 Frame_Shift_Del p.Y2261Sfs*10 0.16 TCGA-B9-4113-01 10 101491791 101491791 A C COX15 Missense_Mutation p.F6V 0.29 tolerated_low_confidence(0.63) benign(0) TCGA-B9-4113-01 10 74896486 74896486 T G ECD Missense_Mutation p.K593N 0.40 deleterious(0) possibly_damaging(0.9) TCGA-B9-4113-01 11 19251275 19251275 A T E2F8 Missense_Mutation p.L540Q 0.36 tolerated(0.12) benign(0.01) TCGA-B9-4113-01 11 32954930 32954930 C A QSER1 Nonsense_Mutation p.S580* 0.26 TCGA-B9-4113-01 11 46880524 46880525 - T LRP4 3'UTR 0.29 TCGA-B9-4113-01 11 47304129 47304129 T G MADD Missense_Mutation p.L556R 0.38 deleterious(0) probably_damaging(0.999) TCGA-B9-4113-01 12 112184083 112184083 C A ACAD10 Missense_Mutation p.P782T 0.26 deleterious(0) benign(0.127) TCGA-B9-4113-01 12 130184819 130184819 C G TMEM132D Silent p.L168L 0.58 TCGA-B9-4113-01 12 18658292 18658292 G A PIK3C2G Missense_Mutation p.D1033N 0.60 deleterious(0.01) probably_damaging(1) TCGA-B9-4113-01 12 41585335 41585335 C T PDZRN4 Nonsense_Mutation p.R242* 0.30 TCGA-B9-4113-01 12 57619608 57619608 C A NXPH4 3'UTR 0.33 TCGA-B9-4113-01 12 9006738 9006738 A - A2ML1 Frame_Shift_Del p.T869Lfs*126 0.40 TCGA-B9-4113-01 12 93968463 93968463 C G SOCS2 Intron 0.48 TCGA-B9-4113-01 13 29287510 29287510 A G SLC46A3 Missense_Mutation p.Y123H 0.24 deleterious(0.03) probably_damaging(0.945) TCGA-B9-4113-01 13 52548108 52548108 A T ATP7B Silent p.A416A 0.36 TCGA-B9-4113-01 13 79190506 79190506 T A RNF219 Missense_Mutation p.T464S 0.43 tolerated(1) benign(0.005) TCGA-B9-4113-01 15 41146021 41146021 C T SPINT1 Silent p.G285G 0.34 TCGA-B9-4113-01 15 43724401 43724401 G A TP53BP1 Silent p.L1222L 0.41 TCGA-B9-4113-01 15 44816498 44816498 G C CTDSPL2 3'UTR 0.33 TCGA-B9-4113-01 15 57730838 57730838 C G CGNL1 Missense_Mutation p.T214R 0.36 tolerated(0.27) benign(0.003) TCGA-B9-4113-01 15 94841734 94841734 C T MCTP2 Silent p.S80S 0.29 TCGA-B9-4113-01 16 22237028 22237028 G C EEF2K 5'UTR 0.32 TCGA-B9-4113-01 17 29220728 29220728 T G ATAD5 Missense_Mutation p.N1619K 0.23 tolerated(0.37) benign(0.009) TCGA-B9-4113-01 17 61466867 61466867 C A TANC2 Missense_Mutation p.L931M 0.49 tolerated(0.56) benign(0.14) TCGA-B9-4113-01 17 66270212 66270212 C A SLC16A6 Splice_Site p.X78_splice 0.41 TCGA-B9-4113-01 18 7567846 7567847 TT A PTPRM Frame_Shift_Del p.L11Wfs*6 0.30 TCGA-B9-4113-01 18 76754972 76754972 T C SALL3 Missense_Mutation p.I994T 0.37 deleterious(0) possibly_damaging(0.652) TCGA-B9-4113-01 19 12297631 12297631 G T ZNF136 Missense_Mutation p.W146C 0.36 deleterious(0) possibly_damaging(0.723) TCGA-B9-4113-01 19 15164633 15164633 C T CASP14 Silent p.H89H 0.15 TCGA-B9-4113-01 19 16918705 16918705 G A NWD1 Missense_Mutation p.E1349K 0.38 tolerated(0.2) benign(0.285) TCGA-B9-4113-01 19 2191111 2191111 C G DOT1L Missense_Mutation p.P122R 0.33 deleterious(0) probably_damaging(0.994) TCGA-B9-4113-01 19 2216711 2216711 G A DOT1L Silent p.L785L 0.37 TCGA-B9-4113-01 19 53669370 53669370 C G ZNF665 Missense_Mutation p.A125P 0.32 deleterious(0.01) benign(0.212) TCGA-B9-4113-01 1 11273603 11273603 G C MTOR Silent p.T1046T 0.38 TCGA-B9-4113-01 1 156713018 156713018 A G HDGF 3'Flank 0.36 TCGA-B9-4113-01 1 19490300 19490300 C G UBR4 Missense_Mutation p.K1574N 0.41 probably_damaging(0.918) TCGA-B9-4113-01 1 204167487 204167487 C A GOLT1A 3'UTR 0.49 TCGA-B9-4113-01 1 207105906 207105906 C A PIGR Nonsense_Mutation p.G635* 0.42 TCGA-B9-4113-01 1 207940508 207940508 C A CD46 Missense_Mutation p.T275N 0.33 deleterious(0.01) benign(0.29) TCGA-B9-4113-01 1 22927186 22927186 A T EPHA8 Silent p.P807P 0.39 TCGA-B9-4113-01 1 235318245 235318245 T A RBM34 Missense_Mutation p.N183I 0.34 deleterious(0) possibly_damaging(0.864) TCGA-B9-4113-01 1 35457962 35457962 T - ZMYM6 Frame_Shift_Del p.K673Nfs*14 0.30 TCGA-B9-4113-01 1 85487988 85487988 C A MCOLN3 Missense_Mutation p.K397N 0.33 deleterious(0.02) benign(0.158) TCGA-B9-4113-01 20 62193087 62193087 T C HELZ2 Missense_Mutation p.R2235G 0.37 deleterious(0.04) possibly_damaging(0.697) TCGA-B9-4113-01 21 47626684 47626684 T G LSS Splice_Site p.X490_splice 0.38 TCGA-B9-4113-01 22 22319734 22319735 - TTG TOP3B In_Frame_Ins p.T288dup 0.37 TCGA-B9-4113-01 22 42523507 42523516 AGGGGGACGA - CYP2D6 Frame_Shift_Del p.I369Rfs*3 0.09 TCGA-B9-4113-01 2 109527287 109527287 C T EDAR Silent p.P225P 0.35 TCGA-B9-4113-01 2 127818193 127818193 C G BIN1 Intron 0.32 TCGA-B9-4113-01 2 201790595 201790595 C A ORC2 Missense_Mutation p.D371Y 0.35 deleterious(0) probably_damaging(0.995) TCGA-B9-4113-01 2 216981563 216981564 - C XRCC5 Frame_Shift_Ins p.F107Lfs*15 0.31 TCGA-B9-4113-01 2 26459821 26459821 G C HADHA Missense_Mutation p.F72L 0.33 tolerated(0.55) benign(0.019) TCGA-B9-4113-01 2 27275809 27275809 T C AGBL5 5'UTR 0.34 TCGA-B9-4113-01 2 27565919 27565920 - TGGCCTTT GTF3C2 Frame_Shift_Ins p.Q115Kfs*18 0.12 TCGA-B9-4113-01 2 27565920 27565920 G T GTF3C2 Silent p.P114P 0.30 TCGA-B9-4113-01 2 42488420 42488420 T C EML4 Silent p.A166A 0.26 TCGA-B9-4113-01 2 42994588 42994588 G C HAAO Missense_Mutation p.P284A 0.13 tolerated(0.06) benign(0.001) TCGA-B9-4113-01 2 69472576 69472579 GCAC - ANTXR1 Frame_Shift_Del p.A552Lfs*41 0.40 TCGA-B9-4113-01 3 142274792 142274792 A T ATR Silent p.S756S 0.34 TCGA-B9-4113-01 3 31774841 31774841 G A OSBPL10 Missense_Mutation p.L335F 0.29 tolerated(0.25) benign(0.018) TCGA-B9-4113-01 3 3189651 3189651 G C TRNT1 Missense_Mutation p.C373S 0.37 tolerated(0.41) benign(0) TCGA-B9-4113-01 4 115767018 115767018 G A NDST4 Silent p.I692I 0.42 TCGA-B9-4113-01 4 177136796 177136796 T C ASB5 Silent p.Q315Q 0.32 TCGA-B9-4113-01 4 187077186 187077186 A G FAM149A Missense_Mutation p.Q139R 0.37 tolerated(0.48) benign(0.002) TCGA-B9-4113-01 4 22390249 22390249 C G GPR125 Missense_Mutation p.L1015F 0.40 deleterious(0.04) benign(0.086) TCGA-B9-4113-01 4 57248668 57248668 A T AASDH Missense_Mutation p.I109N 0.33 deleterious(0) probably_damaging(0.987) TCGA-B9-4113-01 4 8417674 8417674 C T ACOX3 Missense_Mutation p.G66E 0.38 tolerated(0.08) benign(0.157) TCGA-B9-4113-01 4 89039327 89039327 A G ABCG2 Silent p.L259L 0.38 TCGA-B9-4113-01 4 985220 985220 G A SLC26A1 Missense_Mutation p.S91L 0.34 deleterious(0) probably_damaging(0.952) TCGA-B9-4113-01 5 150660717 150660717 G T SLC36A3 Nonsense_Mutation p.Y375* 0.37 TCGA-B9-4113-01 5 170814888 170814888 C T NPM1 5'UTR 0.35 TCGA-B9-4113-01 5 176797996 176797996 G T RGS14 Missense_Mutation p.K406N 0.33 deleterious(0) probably_damaging(1) TCGA-B9-4113-01 5 38504185 38504185 T C LIFR Missense_Mutation p.I444V 0.33 tolerated(0.91) benign(0) TCGA-B9-4113-01 5 38953603 38953603 C G RICTOR Missense_Mutation p.W917S 0.15 tolerated(0.14) probably_damaging(0.95) TCGA-B9-4113-01 6 139495590 139495590 A - HECA Frame_Shift_Del p.K461Sfs*32 0.40 TCGA-B9-4113-01 6 29395381 29395381 T G OR11A1 Missense_Mutation p.E13A 0.32 deleterious(0.01) possibly_damaging(0.616) TCGA-B9-4113-01 6 36269817 36269817 G A PNPLA1 Missense_Mutation p.D319N 0.36 tolerated(0.17) benign(0.003) TCGA-B9-4113-01 7 100875882 100875882 C T CLDN15 Intron 0.40 TCGA-B9-4113-01 7 102040095 102040095 G A PRKRIP1 Silent p.K102K 0.41 TCGA-B9-4113-01 7 102040096 102040096 G A PRKRIP1 Splice_Site p.X102_splice 0.41 TCGA-B9-4113-01 7 149129443 149129443 C T ZNF777 Silent p.E640E 0.38 TCGA-B9-4113-01 7 35912377 35912377 G A SEPT7 Splice_Site p.X127_splice 0.41 TCGA-B9-4113-01 9 107521645 107521645 C T NIPSNAP3A 3'UTR 0.35 TCGA-B9-4113-01 9 137593045 137593045 A - COL5A1 Frame_Shift_Del p.K174Rfs*6 0.34 TCGA-B9-4113-01 9 88201776 88201776 T A AGTPBP1 Missense_Mutation p.Q961H 0.34 tolerated(0.23) possibly_damaging(0.458) TCGA-B9-4114-01 10 103917239 103917239 C T NOLC1 Missense_Mutation p.A123V 0.27 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-B9-4114-01 10 72195424 72195424 T A NODAL Missense_Mutation p.E170V 0.30 tolerated(0.09) benign(0.443) TCGA-B9-4114-01 11 111590501 111590501 C T SIK2 Silent p.V423V 0.36 TCGA-B9-4114-01 11 114401163 114401163 C T NXPE1 Silent p.A47A 0.20 TCGA-B9-4114-01 11 120097580 120097580 A C OAF Missense_Mutation p.H141P 0.29 tolerated(0.22) benign(0.444) TCGA-B9-4114-01 11 120097581 120097581 C A OAF Missense_Mutation p.H141Q 0.28 tolerated(0.35) benign(0.027) TCGA-B9-4114-01 11 1466623 1466623 C T BRSK2 Silent p.D350D 0.42 TCGA-B9-4114-01 11 17794283 17794283 C T KCNC1 Intron 0.30 TCGA-B9-4114-01 11 32623898 32623898 A T EIF3M Missense_Mutation p.N360Y 0.43 deleterious(0) unknown(0) TCGA-B9-4114-01 11 57480106 57480106 C A TMX2 Missense_Mutation p.P6T 0.32 tolerated_low_confidence(0.16) probably_damaging(0.911) TCGA-B9-4114-01 11 64889268 64889268 G T FAU Silent p.R6R 0.23 TCGA-B9-4114-01 11 64889269 64889269 C G FAU Missense_Mutation p.R6P 0.23 deleterious(0.02) benign(0.016) TCGA-B9-4114-01 11 93466710 93466710 C T KIAA1731 3'Flank 0.27 TCGA-B9-4114-01 12 109834319 109834319 A - MYO1H Frame_Shift_Del p.T125Pfs*4 0.15 TCGA-B9-4114-01 12 118577333 118577333 G A PEBP1 Missense_Mutation p.G108D 0.41 deleterious(0) probably_damaging(0.997) TCGA-B9-4114-01 12 122964832 122964833 - A ZCCHC8 Frame_Shift_Ins p.G349Wfs*7 0.32 TCGA-B9-4114-01 12 54689074 54689074 G C NFE2 5'UTR 0.24 TCGA-B9-4114-01 12 56558312 56558312 T G SMARCC2 Missense_Mutation p.N1115H 0.43 tolerated_low_confidence(0.16) unknown(0) TCGA-B9-4114-01 12 57861143 57861143 C A GLI1 Missense_Mutation p.R314S 0.21 deleterious(0) probably_damaging(0.912) TCGA-B9-4114-01 12 64615826 64615826 G C C12orf66 Silent p.A64A 0.27 TCGA-B9-4114-01 13 25067776 25067776 T C PARP4 Silent p.E279E 0.29 TCGA-B9-4114-01 13 48830432 48830433 - CAA ITM2B In_Frame_Ins p.F122_E123insQ 0.31 TCGA-B9-4114-01 14 102675938 102675938 T C WDR20 Silent p.D508D 0.33 TCGA-B9-4114-01 14 24617213 24617213 C G RNF31 Missense_Mutation p.T74R 0.32 deleterious(0.02) probably_damaging(1) TCGA-B9-4114-01 14 45433529 45433529 C - FAM179B Frame_Shift_Del p.H635Qfs*16 0.26 TCGA-B9-4114-01 14 94849213 94849213 T G SERPINA1 Missense_Mutation p.Q121P 0.22 deleterious(0.01) benign(0.182) TCGA-B9-4114-01 15 101114034 101114034 C - LINS Frame_Shift_Del p.L349Cfs*2 0.26 TCGA-B9-4114-01 15 40590557 40590557 G A PLCB2 Missense_Mutation p.S341L 0.22 deleterious(0) probably_damaging(1) TCGA-B9-4114-01 15 65239709 65239709 G T ANKDD1A Missense_Mutation p.W416L 0.32 deleterious(0) probably_damaging(0.911) TCGA-B9-4114-01 15 74425252 74425252 G - ISLR2 Frame_Shift_Del p.V53* 0.28 TCGA-B9-4114-01 15 82574679 82574679 A C FAM154B Missense_Mutation p.H158P 0.18 deleterious(0) benign(0.363) TCGA-B9-4114-01 16 23646407 23646407 A T PALB2 Missense_Mutation p.V487D 0.51 tolerated(0.36) possibly_damaging(0.726) TCGA-B9-4114-01 16 30776526 30776526 A T RNF40 Missense_Mutation p.T266S 0.27 tolerated(0.2) benign(0.298) TCGA-B9-4114-01 17 1946480 1946480 C A DPH1 3'UTR 0.67 TCGA-B9-4114-01 17 37876080 37876080 A C ERBB2 Silent p.R647R 0.18 TCGA-B9-4114-01 17 42275086 42275086 C A ATXN7L3 Nonsense_Mutation p.E22* 0.17 TCGA-B9-4114-01 17 48628196 48628196 G C SPATA20 Missense_Mutation p.G434A 0.17 deleterious(0.01) possibly_damaging(0.52) TCGA-B9-4114-01 17 67108373 67108373 C T ABCA6 Missense_Mutation p.G695S 0.43 deleterious(0) probably_damaging(1) TCGA-B9-4114-01 17 74382029 74382029 G A SPHK1 Intron 0.47 TCGA-B9-4114-01 17 7762716 7762716 C T CYB5D1 Missense_Mutation p.S158F 0.22 deleterious(0) benign(0.197) TCGA-B9-4114-01 19 1279088 1279088 C A C19orf24 3'UTR 0.20 TCGA-B9-4114-01 19 19823080 19823080 C A ZNF14 Missense_Mutation p.C337F 0.29 deleterious(0) probably_damaging(1) TCGA-B9-4114-01 19 36050918 36050918 G T ATP4A Missense_Mutation p.A282E 0.26 deleterious(0) probably_damaging(0.998) TCGA-B9-4114-01 1 116931576 116931576 A C ATP1A1 Missense_Mutation p.D230A 0.41 deleterious(0.02) benign(0.002) TCGA-B9-4114-01 1 120839913 120839913 C A FAM72B Missense_Mutation p.S27Y 0.14 tolerated(0.66) benign(0.004) TCGA-B9-4114-01 1 153279661 153279661 G C PGLYRP3 Nonsense_Mutation p.Y46* 0.27 TCGA-B9-4114-01 1 19420561 19420561 G T UBR4 Missense_Mutation p.R4607S 0.28 probably_damaging(0.982) TCGA-B9-4114-01 1 234743056 234743058 AGC - IRF2BP2 In_Frame_Del p.C530del 0.34 TCGA-B9-4114-01 1 53236935 53236935 C A ZYG11B Missense_Mutation p.T147N 0.32 tolerated(0.18) benign(0.027) TCGA-B9-4114-01 1 67138996 67138996 C A SGIP1 Missense_Mutation p.A198D 0.31 tolerated(0.79) possibly_damaging(0.631) TCGA-B9-4114-01 1 94054731 94054731 C T BCAR3 Silent p.Q244Q 0.35 TCGA-B9-4114-01 20 3090943 3090943 G A UBOX5 Silent p.L479L 0.40 TCGA-B9-4114-01 20 44512145 44512145 A T ZSWIM1 Missense_Mutation p.N305I 0.31 tolerated(0.19) benign(0.047) TCGA-B9-4114-01 22 47068788 47068788 G A GRAMD4 Missense_Mutation p.R378H 0.37 deleterious(0.02) possibly_damaging(0.879) TCGA-B9-4114-01 2 202262967 202262967 G A TRAK2 Silent p.F197F 0.50 TCGA-B9-4114-01 2 231177371 231177371 C T SP140 Missense_Mutation p.A859V 0.31 deleterious(0) possibly_damaging(0.688) TCGA-B9-4114-01 2 30955349 30955349 A T CAPN13 Missense_Mutation p.F628I 0.26 deleterious(0) probably_damaging(0.911) TCGA-B9-4114-01 2 99995867 99995867 T G EIF5B Missense_Mutation p.N679K 0.44 benign(0.017) TCGA-B9-4114-01 3 107937434 107937434 G C IFT57 Missense_Mutation p.L148V 0.13 deleterious(0.02) probably_damaging(0.951) TCGA-B9-4114-01 3 158422600 158422600 G C RARRES1 Missense_Mutation p.L218V 0.22 tolerated(0.67) benign(0.091) TCGA-B9-4114-01 4 44449784 44449784 T G KCTD8 Missense_Mutation p.N253H 0.38 deleterious(0) probably_damaging(0.994) TCGA-B9-4114-01 4 44449785 44449785 G A KCTD8 Silent p.L252L 0.39 TCGA-B9-4114-01 4 54343092 54343092 C T LNX1 Missense_Mutation p.A574T 0.18 deleterious(0) probably_damaging(0.933) TCGA-B9-4114-01 4 5721079 5721079 G A EVC Silent p.S93S 0.42 TCGA-B9-4114-01 4 84457815 84457815 T C AGPAT9 Missense_Mutation p.W14R 0.20 deleterious(0) probably_damaging(0.915) TCGA-B9-4114-01 5 131006178 131006178 G A FNIP1 Missense_Mutation p.S1029L 0.22 deleterious(0.01) benign(0.393) TCGA-B9-4114-01 5 131042155 131042155 C A FNIP1 Missense_Mutation p.R288L 0.18 deleterious(0) probably_damaging(0.998) TCGA-B9-4114-01 5 140811171 140811177 GGTATGT - PCDHGA12 Frame_Shift_Del p.Y283Tfs*10 0.34 TCGA-B9-4114-01 5 34757668 34757668 C T RAI14 Silent p.A47A 0.18 TCGA-B9-4114-01 5 50123848 50123848 T A PARP8 Missense_Mutation p.F683Y 0.32 deleterious(0) probably_damaging(0.976) TCGA-B9-4114-01 5 9119220 9119220 A T SEMA5A Silent p.S605S 0.25 TCGA-B9-4114-01 5 92929424 92929424 C A NR2F1 Missense_Mutation p.S383Y 0.29 deleterious(0) possibly_damaging(0.781) TCGA-B9-4114-01 5 93076682 93076682 A T POU5F2 Silent p.L196L 0.31 TCGA-B9-4114-01 6 117746764 117746764 C G ROS1 Missense_Mutation p.C19S 0.31 tolerated_low_confidence(0.17) benign(0.007) TCGA-B9-4114-01 6 12123740 12123740 T C HIVEP1 Silent p.L1238L 0.05 TCGA-B9-4114-01 6 32713781 32713781 C T HLA-DQA2 Missense_Mutation p.S182F 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-B9-4114-01 6 33748926 33748926 A C LEMD2 Missense_Mutation p.N286K 0.30 deleterious(0.01) possibly_damaging(0.828) TCGA-B9-4114-01 6 43251695 43251695 C A TTBK1 Missense_Mutation p.L1073M 0.40 possibly_damaging(0.483) TCGA-B9-4114-01 7 100228607 100228607 C T TFR2 Missense_Mutation p.G392D 0.29 tolerated(0.06) probably_damaging(0.991) TCGA-B9-4114-01 7 151882674 151882674 T G KMT2C Missense_Mutation p.K1684T 0.10 probably_damaging(0.945) TCGA-B9-4114-01 7 1590513 1590513 G A TMEM184A Missense_Mutation p.L109F 0.21 deleterious(0.03) benign(0.248) TCGA-B9-4114-01 7 82763635 82763635 A G PCLO Silent p.N1077N 0.23 TCGA-B9-4114-01 8 139164000 139164000 G T FAM135B Silent p.G906G 0.30 TCGA-B9-4114-01 8 139164004 139164004 T C FAM135B Missense_Mutation p.K905R 0.28 deleterious(0.01) benign(0.035) TCGA-B9-4114-01 8 22464154 22464154 T A CCAR2 Missense_Mutation p.V62D 0.32 deleterious(0) probably_damaging(0.999) TCGA-B9-4114-01 8 6614714 6614714 T A AGPAT5 Missense_Mutation p.D300E 0.50 tolerated(0.14) benign(0.016) TCGA-B9-4114-01 8 9413684 9413684 C G TNKS Missense_Mutation p.R79G 0.27 deleterious_low_confidence(0.02) unknown(0) TCGA-B9-4114-01 8 99441267 99441267 G T KCNS2 Nonsense_Mutation p.E354* 0.26 TCGA-B9-4114-01 9 117792668 117792668 G - TNC Frame_Shift_Del p.F1980Sfs*10 0.48 TCGA-B9-4114-01 9 133748371 133748371 C T ABL1 Silent p.A363A 0.63 TCGA-B9-4114-01 9 35375163 35375163 A G UNC13B Missense_Mutation p.M445V 0.61 tolerated(0.17) benign(0.011) TCGA-B9-4115-01 10 126477651 126477651 A G METTL10 Silent p.L84L 0.36 TCGA-B9-4115-01 10 73579285 73579285 C A PSAP Missense_Mutation p.K429N 0.07 tolerated(0.06) possibly_damaging(0.83) TCGA-B9-4115-01 11 133814179 133814179 C A IGSF9B Silent p.V115V 0.36 TCGA-B9-4115-01 11 61957759 61957759 G T SCGB1D1 Translation_Start_Site p.M1? 0.10 deleterious(0.01) unknown(0) TCGA-B9-4115-01 11 63756155 63756155 G T OTUB1 Missense_Mutation p.E50D 0.36 tolerated(0.87) benign(0.001) TCGA-B9-4115-01 11 6486812 6486812 C T TRIM3 Silent p.L38L 0.35 TCGA-B9-4115-01 12 120882569 120882569 C T TRIAP1 3'UTR 0.40 TCGA-B9-4115-01 12 2016649 2016649 C T CACNA2D4 Nonsense_Mutation p.W246* 0.05 TCGA-B9-4115-01 12 56115013 56115013 G A RDH5 Silent p.L15L 0.25 TCGA-B9-4115-01 12 56115044 56115044 G A RDH5 Missense_Mutation p.A26T 0.29 tolerated(0.52) benign(0.001) TCGA-B9-4115-01 13 113516824 113516824 G A ATP11A Missense_Mutation p.A976T 0.41 tolerated(0.11) benign(0.044) TCGA-B9-4115-01 13 113516825 113516825 C G ATP11A Missense_Mutation p.A976G 0.41 tolerated(0.55) benign(0.006) TCGA-B9-4115-01 13 99481713 99481713 T C DOCK9 Missense_Mutation p.T1582A 0.23 deleterious(0) probably_damaging(0.998) TCGA-B9-4115-01 14 105222013 105222013 C T SIVA1 Silent p.D55D 0.30 TCGA-B9-4115-01 14 68282659 68282659 C A ZFYVE26 Nonsense_Mutation p.E8* 0.39 TCGA-B9-4115-01 14 95556880 95556880 G T DICER1 Silent p.A1908A 0.35 TCGA-B9-4115-01 16 15716936 15716936 A - KIAA0430 Frame_Shift_Del p.F772Sfs*27 0.36 TCGA-B9-4115-01 16 19498328 19498328 T G TMC5 Missense_Mutation p.F809V 0.38 deleterious(0) probably_damaging(1) TCGA-B9-4115-01 16 21213128 21213128 C A ZP2 Missense_Mutation p.S468I 0.03 tolerated(0.08) benign(0.125) TCGA-B9-4115-01 16 67038037 67038037 C A CES4A Missense_Mutation p.D330E 0.35 tolerated(0.58) benign(0.048) TCGA-B9-4115-01 17 47869250 47869250 G T KAT7 Missense_Mutation p.R6S 0.17 deleterious_low_confidence(0) benign(0.114) TCGA-B9-4115-01 17 4805695 4805695 A G C17orf107 3'UTR 0.50 TCGA-B9-4115-01 17 7464141 7464141 G A TNFSF12-TNFSF13 Silent p.V328V 0.24 TCGA-B9-4115-01 18 13049324 13049324 T - CEP192 Frame_Shift_Del p.Y846Mfs*16 0.30 TCGA-B9-4115-01 19 36642400 36642402 TGT - COX7A1 In_Frame_Del p.N50del 0.44 TCGA-B9-4115-01 19 41223385 41223385 A T ITPKC Silent p.P115P 0.36 TCGA-B9-4115-01 19 42752789 42752790 - AAA ERF In_Frame_Ins p.D491_C492insF 0.37 TCGA-B9-4115-01 19 49971767 49971767 A T ALDH16A1 Missense_Mutation p.T690S 0.40 tolerated(0.64) benign(0.034) TCGA-B9-4115-01 19 5700933 5700933 G A LONP1 Missense_Mutation p.T458I 0.08 tolerated(0.05) benign(0.287) TCGA-B9-4115-01 19 58131703 58131703 C A ZNF134 Missense_Mutation p.H72Q 0.39 tolerated(0.07) benign(0.255) TCGA-B9-4115-01 1 110203917 110203917 C A GSTM4 3'UTR 0.07 TCGA-B9-4115-01 1 160093040 160093040 G T ATP1A2 Missense_Mutation p.R72L 0.50 deleterious(0.01) possibly_damaging(0.474) TCGA-B9-4115-01 1 160105304 160105304 C A ATP1A2 Silent p.G732G 0.29 TCGA-B9-4115-01 1 160968607 160968607 C G F11R 3'UTR 0.30 TCGA-B9-4115-01 1 209964089 209964089 G C IRF6 Missense_Mutation p.L271V 0.40 deleterious(0) probably_damaging(0.999) TCGA-B9-4115-01 1 22903356 22903356 G C EPHA8 Missense_Mutation p.R269P 0.27 tolerated(0.24) benign(0.078) TCGA-B9-4115-01 1 27121059 27121059 C T PIGV Silent p.F178F 0.36 TCGA-B9-4115-01 1 27428600 27428600 C T SLC9A1 Silent p.L614L 0.29 TCGA-B9-4115-01 1 36359988 36359988 C T AGO1 Missense_Mutation p.P286L 0.37 deleterious(0) benign(0.009) TCGA-B9-4115-01 1 39907695 39907695 T G MACF1 Missense_Mutation p.N4189K 0.36 possibly_damaging(0.755) TCGA-B9-4115-01 1 72748088 72748088 G T NEGR1 Silent p.S30S 0.07 TCGA-B9-4115-01 1 72748110 72748110 C T NEGR1 Missense_Mutation p.S23N 0.39 tolerated(0.06) benign(0.24) TCGA-B9-4115-01 1 85491700 85491700 A G MCOLN3 Silent p.N339N 0.31 TCGA-B9-4115-01 20 19956190 19956190 C T RIN2 Silent p.F556F 0.05 TCGA-B9-4115-01 20 2411617 2411617 G T TGM6 Missense_Mutation p.K637N 0.09 tolerated(0.13) benign(0.035) TCGA-B9-4115-01 20 32199022 32199022 A G CBFA2T2 Missense_Mutation p.T110A 0.32 tolerated(1) benign(0.003) TCGA-B9-4115-01 21 42748818 42748818 G T MX2 5'UTR 0.08 TCGA-B9-4115-01 21 42749037 42749037 G T MX2 Missense_Mutation p.L68F 0.08 deleterious(0) probably_damaging(0.997) TCGA-B9-4115-01 22 40061912 40061912 T G CACNA1I Missense_Mutation p.C1335W 0.34 deleterious(0) possibly_damaging(0.892) TCGA-B9-4115-01 2 100019166 100019166 C T REV1 Missense_Mutation p.G1161E 0.31 deleterious(0) probably_damaging(1) TCGA-B9-4115-01 2 45879507 45879507 G C PRKCE Missense_Mutation p.G90R 0.46 tolerated(0.07) probably_damaging(0.943) TCGA-B9-4115-01 3 13415370 13415370 G A NUP210 Missense_Mutation p.H479Y 0.45 tolerated(0.1) benign(0.002) TCGA-B9-4115-01 3 172241139 172241139 C T TNFSF10 Silent p.L12L 0.05 TCGA-B9-4115-01 3 38178134 38178134 C G ACAA1 Missense_Mutation p.V72L 0.52 tolerated(0.51) benign(0.002) TCGA-B9-4115-01 4 1232016 1232016 A - CTBP1 Frame_Shift_Del p.V51Wfs*17 0.35 TCGA-B9-4115-01 4 159092402 159092402 A T FAM198B Silent p.T42T 0.35 TCGA-B9-4115-01 4 3201562 3201562 C T HTT Silent p.S1824S 0.08 TCGA-B9-4115-01 4 84243394 84243394 G A HPSE Silent p.Y117Y 0.48 TCGA-B9-4115-01 5 10249973 10249973 C T FAM173B Missense_Mutation p.G5R 0.37 tolerated_low_confidence(0.09) benign(0.003) TCGA-B9-4115-01 5 132160478 132160478 G T SHROOM1 Missense_Mutation p.P357H 0.41 deleterious(0.02) benign(0.016) TCGA-B9-4115-01 5 134002687 134002687 G A SEC24A Splice_Site p.X247_splice 0.28 TCGA-B9-4115-01 5 136834142 136834142 C A SPOCK1 Missense_Mutation p.G36C 0.50 deleterious(0) benign(0.382) TCGA-B9-4115-01 5 66438012 66438022 AGGCAGAATTT - MAST4 Frame_Shift_Del p.K855Nfs*7 0.35 TCGA-B9-4115-01 5 73163796 73163796 G C ARHGEF28 Missense_Mutation p.G750R 0.38 tolerated(0.53) benign(0.091) TCGA-B9-4115-01 5 74063164 74063164 T A GFM2 5'UTR 0.28 TCGA-B9-4115-01 6 108499383 108499383 T G NR2E1 Missense_Mutation p.F194V 0.35 deleterious(0) probably_damaging(0.927) TCGA-B9-4115-01 6 26199108 26199109 CA - HIST1H2AD Frame_Shift_Del p.H124Pfs*? 0.12 TCGA-B9-4115-01 6 26370805 26370805 A - BTN3A2 Frame_Shift_Del p.K231Rfs*47 0.37 TCGA-B9-4115-01 6 28501952 28501952 G T GPX5 3'UTR 0.22 TCGA-B9-4115-01 6 39313488 39313488 G T KIF6 Missense_Mutation p.P770Q 0.30 tolerated(0.68) benign(0.001) TCGA-B9-4115-01 7 139299101 139299101 T C HIPK2 Missense_Mutation p.T641A 0.39 tolerated(0.25) benign(0.001) TCGA-B9-4115-01 7 142334896 142334896 C T TRBV20-1 Silent p.Y106Y 0.41 TCGA-B9-4115-01 8 10285904 10285904 G A MSRA 3'UTR 0.35 TCGA-B9-4115-01 8 36698474 36698474 C A KCNU1 Silent p.L552L 0.20 TCGA-B9-4115-01 8 38034599 38034599 G A BAG4 Missense_Mutation p.G71D 0.72 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-B9-4115-01 8 65494499 65494499 C T BHLHE22 3'UTR 0.28 TCGA-B9-4115-01 9 116859620 116859620 A T KIF12 Missense_Mutation p.F65I 0.43 tolerated(0.45) benign(0.026) TCGA-B9-4115-01 9 12694339 12694339 C G TYRP1 Missense_Mutation p.P115A 0.31 tolerated(0.15) benign(0.011) TCGA-B9-4115-01 9 5801231 5801231 A T ERMP1 Missense_Mutation p.F671Y 0.41 deleterious(0.03) possibly_damaging(0.806) TCGA-B9-4115-01 X 135594033 135594033 A T HTATSF1 Missense_Mutation p.E710V 0.73 tolerated_low_confidence(0.05) unknown(0) TCGA-B9-4115-01 X 41198303 41198303 C T DDX3X Missense_Mutation p.P40S 0.07 deleterious(0) benign(0.009) TCGA-B9-4115-01 X 82763970 82763970 C T POU3F4 Missense_Mutation p.A213V 0.10 deleterious(0) probably_damaging(1) TCGA-B9-4116-01 10 120879873 120879873 A T FAM45A Missense_Mutation p.M168L 0.28 tolerated(0.55) benign(0.009) TCGA-B9-4116-01 10 88728249 88728249 G A ADIRF 5'UTR 0.43 TCGA-B9-4116-01 10 99192203 99192203 C T PGAM1 Silent p.P229P 0.37 TCGA-B9-4116-01 11 133805658 133805658 C T IGSF9B Splice_Site p.X274_splice 0.61 TCGA-B9-4116-01 11 40136626 40136630 AGCAC - LRRC4C Frame_Shift_Del p.V405Qfs*2 0.32 TCGA-B9-4116-01 11 55032729 55032729 G T TRIM48 Missense_Mutation p.S133I 0.54 deleterious(0.01) benign(0.089) TCGA-B9-4116-01 11 63743765 63743765 C G COX8A Missense_Mutation p.H61Q 0.27 deleterious(0) possibly_damaging(0.85) TCGA-B9-4116-01 11 65305494 65305494 G A SCYL1 Nonsense_Mutation p.W696* 0.47 TCGA-B9-4116-01 11 69625465 69625465 G TT FGF3 Frame_Shift_Ins p.H110Kfs*18 0.30 TCGA-B9-4116-01 12 105512257 105512259 GTG - KIAA1033 In_Frame_Del p.V158del 0.33 TCGA-B9-4116-01 12 111963052 111963052 A G ATXN2 Missense_Mutation p.W374R 0.34 probably_damaging(0.998) TCGA-B9-4116-01 12 133732280 133732280 G C ZNF10 Missense_Mutation p.V150L 0.22 tolerated(0.06) benign(0.048) TCGA-B9-4116-01 12 53647275 53647275 T G MFSD5 Missense_Mutation p.L326R 0.35 tolerated(0.05) possibly_damaging(0.763) TCGA-B9-4116-01 12 56096870 56096870 T - ITGA7 Frame_Shift_Del p.E100Gfs*60 0.35 TCGA-B9-4116-01 12 56559482 56559482 A G SMARCC2 Missense_Mutation p.L920P 0.28 deleterious(0) possibly_damaging(0.766) TCGA-B9-4116-01 12 81661720 81661720 A G PPFIA2 Silent p.L1153L 0.30 TCGA-B9-4116-01 13 21295994 21295994 C T IL17D Silent p.V170V 0.38 TCGA-B9-4116-01 13 22245934 22245935 - G FGF9 5'UTR 0.25 TCGA-B9-4116-01 13 48620019 48620019 C T NUDT15 3'UTR 0.24 TCGA-B9-4116-01 14 74416885 74416885 T C COQ6 5'Flank 0.44 TCGA-B9-4116-01 15 51285604 51285604 T G AP4E1 Missense_Mutation p.W710G 0.12 deleterious(0) probably_damaging(0.999) TCGA-B9-4116-01 15 99465632 99465632 C A IGF1R Missense_Mutation p.N819K 0.34 deleterious(0.03) benign(0.23) TCGA-B9-4116-01 16 14346228 14346228 T G MKL2 Missense_Mutation p.S808A 0.30 tolerated(0.11) probably_damaging(0.995) TCGA-B9-4116-01 16 14755800 14755800 C G BFAR Missense_Mutation p.P279A 0.36 deleterious(0) probably_damaging(0.999) TCGA-B9-4116-01 16 18851234 18851234 C T SMG1 Missense_Mutation p.G2244E 0.21 tolerated(0.13) possibly_damaging(0.673) TCGA-B9-4116-01 16 19884048 19884048 G A GPRC5B Silent p.D40D 0.38 TCGA-B9-4116-01 16 30899187 30899187 C T BCL7C Silent p.%3D 0.39 TCGA-B9-4116-01 16 49671278 49671278 G T ZNF423 Missense_Mutation p.H595Q 0.31 tolerated(0.21) benign(0.12) TCGA-B9-4116-01 16 56531663 56531663 G A BBS2 Silent p.L597L 0.41 TCGA-B9-4116-01 16 74425443 74425443 C A NPIPB15 Missense_Mutation p.P266H 0.11 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-B9-4116-01 16 88653023 88653023 G T ZC3H18 Nonsense_Mutation p.E207* 0.25 TCGA-B9-4116-01 17 15964734 15964734 A G NCOR1 Silent p.S1954S 0.28 TCGA-B9-4116-01 17 40821477 40821477 C A PLEKHH3 Nonsense_Mutation p.E726* 0.40 TCGA-B9-4116-01 17 42289718 42289718 C G UBTF Missense_Mutation p.E255D 0.34 tolerated(0.74) benign(0.013) TCGA-B9-4116-01 17 4800540 4800540 T G MINK1 Silent p.V1319V 0.30 TCGA-B9-4116-01 17 6942168 6942169 - ATA SLC16A13 In_Frame_Ins p.I348dup 0.37 TCGA-B9-4116-01 17 7193332 7193332 C A YBX2 Missense_Mutation p.G268V 0.41 deleterious(0) probably_damaging(0.953) TCGA-B9-4116-01 17 7324267 7324267 C A SPEM1 Silent p.V91V 0.40 TCGA-B9-4116-01 17 7919305 7919305 A C GUCY2D Missense_Mutation p.Y1035S 0.33 deleterious(0.01) possibly_damaging(0.751) TCGA-B9-4116-01 19 10132218 10132218 C A RDH8 Silent p.V263V 0.34 TCGA-B9-4116-01 19 11324999 11325018 GGCACTCTGGGCACTGCCCA - DOCK6 Frame_Shift_Del p.L1424Pfs*92 0.17 TCGA-B9-4116-01 19 18963808 18963808 A G UPF1 Missense_Mutation p.I329V 0.31 tolerated(0.57) benign(0.01) TCGA-B9-4116-01 19 39412717 39412717 A T SARS2 Missense_Mutation p.V132E 0.39 tolerated(0.4) benign(0.403) TCGA-B9-4116-01 19 49316535 49316535 A C HSD17B14 Missense_Mutation p.F237C 0.47 deleterious(0) probably_damaging(1) TCGA-B9-4116-01 19 6393064 6393064 C A GTF2F1 5'UTR 0.37 TCGA-B9-4116-01 19 8002997 8002997 T A TIMM44 Missense_Mutation p.E76V 0.34 deleterious(0) probably_damaging(0.999) TCGA-B9-4116-01 19 8468330 8468337 CAGACCGC GACCGT RAB11B Frame_Shift_Del p.A182Gfs*100 0.32 TCGA-B9-4116-01 19 9362275 9362275 T G OR7E24 Missense_Mutation p.C186G 0.22 tolerated(0.14) probably_damaging(0.974) TCGA-B9-4116-01 1 11888206 11888206 G A CLCN6 Missense_Mutation p.R295H 0.05 deleterious(0) possibly_damaging(0.836) TCGA-B9-4116-01 1 164761796 164761796 A T PBX1 Missense_Mutation p.M111L 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-B9-4116-01 1 201039482 201039482 G A CACNA1S Missense_Mutation p.P760S 0.33 tolerated(0.05) possibly_damaging(0.899) TCGA-B9-4116-01 1 231502192 231502192 T A EGLN1 Nonsense_Mutation p.K416* 0.28 TCGA-B9-4116-01 1 27943508 27943508 G A FGR Missense_Mutation p.S181F 0.58 deleterious(0.02) probably_damaging(1) TCGA-B9-4116-01 1 40038242 40038244 GTC TA PABPC4 Frame_Shift_Del p.D70* 0.20 TCGA-B9-4116-01 1 9009376 9009376 A - CA6 Frame_Shift_Del p.Q45Rfs*19 0.35 TCGA-B9-4116-01 20 21376576 21376576 G T NKX2-4 Silent p.A346A 0.30 TCGA-B9-4116-01 20 34091451 34091451 A - CEP250 Frame_Shift_Del p.D1753Tfs*14 0.33 TCGA-B9-4116-01 20 37400319 37400319 G C ACTR5 Missense_Mutation p.G562R 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-B9-4116-01 20 47864026 47864026 G A ZNFX1 Silent p.H1845H 0.37 TCGA-B9-4116-01 20 47864027 47864027 T G ZNFX1 Missense_Mutation p.H1845P 0.38 deleterious(0) probably_damaging(0.999) TCGA-B9-4116-01 20 5903027 5903027 A G CHGB Silent p.T79T 0.36 TCGA-B9-4116-01 20 61833792 61833792 T C YTHDF1 Silent p.K500K 0.16 TCGA-B9-4116-01 21 43221789 43221789 C G PRDM15 Missense_Mutation p.A1379P 0.35 tolerated_low_confidence(0.39) benign(0.006) TCGA-B9-4116-01 22 18028580 18028580 T A CECR2 Silent p.P1180P 0.33 TCGA-B9-4116-01 22 24041048 24041048 A T RGL4 Missense_Mutation p.Q467L 0.28 deleterious(0.05) benign(0.005) TCGA-B9-4116-01 22 41572951 41572951 T A EP300 Missense_Mutation p.C1746S 0.33 benign(0.444) TCGA-B9-4116-01 2 16086058 16086058 G C MYCN Missense_Mutation p.V412L 0.33 tolerated(0.09) benign(0.015) TCGA-B9-4116-01 2 209045533 209045533 A C C2orf80 Missense_Mutation p.I101S 0.28 deleterious(0) possibly_damaging(0.57) TCGA-B9-4116-01 2 231266487 231266487 C G SP140L Missense_Mutation p.R537G 0.33 deleterious(0) probably_damaging(0.999) TCGA-B9-4116-01 2 30863165 30863173 GAAGAGAAA - LCLAT1 In_Frame_Del p.K311_E313del 0.12 TCGA-B9-4116-01 2 85769094 85769097 AAGT - MAT2A Splice_Site p.X183_splice 0.39 TCGA-B9-4116-01 3 100349576 100349576 T G GPR128 Missense_Mutation p.M86R 0.23 tolerated(0.47) benign(0.002) TCGA-B9-4116-01 3 101370247 101370247 T G ZBTB11 Missense_Mutation p.Q975H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.534) TCGA-B9-4116-01 3 110830989 110830989 G A PVRL3 Nonsense_Mutation p.W91* 0.25 TCGA-B9-4116-01 3 112736366 112736368 CAT - C3orf17 In_Frame_Del p.D63del 0.33 TCGA-B9-4116-01 3 196675120 196675120 A T PIGZ Silent p.L216L 0.42 TCGA-B9-4116-01 3 49946456 49946456 G A MON1A Silent p.L650L 0.28 TCGA-B9-4116-01 3 69096707 69096707 T C TMF1 Silent p.T383T 0.39 TCGA-B9-4116-01 3 9793597 9793597 A G OGG1 Missense_Mutation p.T177A 0.34 tolerated(0.4) benign(0.004) TCGA-B9-4116-01 4 156136059 156136059 T G NPY2R Missense_Mutation p.L323R 0.34 deleterious(0) probably_damaging(0.926) TCGA-B9-4116-01 4 187549407 187549407 C A FAT1 Missense_Mutation p.V1571F 0.37 probably_damaging(1) TCGA-B9-4116-01 4 39325032 39325032 C T RFC1 Silent p.E216E 0.38 TCGA-B9-4116-01 4 69968643 69968643 A T UGT2B7 Missense_Mutation p.Q330L 0.33 deleterious(0) possibly_damaging(0.624) TCGA-B9-4116-01 4 80992809 80992809 C A ANTXR2 Splice_Site p.X51_splice 0.26 TCGA-B9-4116-01 4 98865112 98865112 T G STPG2 Missense_Mutation p.N327T 0.29 tolerated(0.09) benign(0.276) TCGA-B9-4116-01 5 140186954 140186954 C T PCDHA4 Missense_Mutation p.P61L 0.09 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-B9-4116-01 5 156565887 156565887 T G MED7 Missense_Mutation p.T186P 0.37 tolerated(0.07) benign(0.418) TCGA-B9-4116-01 5 26906161 26906161 C T CDH9 Missense_Mutation p.D240N 0.22 deleterious(0) probably_damaging(0.997) TCGA-B9-4116-01 6 110757106 110757106 G A SLC22A16 Missense_Mutation p.A457V 0.32 tolerated(0.29) benign(0.21) TCGA-B9-4116-01 6 136709627 136709627 G A MAP7 Missense_Mutation p.R166W 0.34 deleterious(0) probably_damaging(1) TCGA-B9-4116-01 6 158449969 158449969 A T SYNJ2 Silent p.S132S 0.30 TCGA-B9-4116-01 6 46630133 46630133 T C SLC25A27 Missense_Mutation p.M135T 0.24 tolerated(0.05) possibly_damaging(0.507) TCGA-B9-4116-01 7 117879989 117879989 C A ANKRD7 Missense_Mutation p.H247N 0.14 tolerated(0.93) benign(0) TCGA-B9-4116-01 7 151262972 151262972 C T PRKAG2 Splice_Site p.X412_splice 0.35 TCGA-B9-4116-01 7 30475651 30475651 T A NOD1 Missense_Mutation p.R862W 0.31 deleterious(0.04) benign(0.006) TCGA-B9-4116-01 7 73601993 73601993 A G EIF4H Missense_Mutation p.T38A 0.32 deleterious(0.02) benign(0.054) TCGA-B9-4116-01 7 75615481 75615481 A G POR Missense_Mutation p.Y607C 0.45 deleterious(0) probably_damaging(1) TCGA-B9-4116-01 7 97933661 97933661 G A BAIAP2L1 Silent p.T423T 0.19 TCGA-B9-4116-01 8 127569250 127569250 G C FAM84B Missense_Mutation p.Q129E 0.27 tolerated(0.38) probably_damaging(0.992) TCGA-B9-4116-01 9 134010301 134010301 A T NUP214 Missense_Mutation p.H283L 0.30 unknown(0) TCGA-B9-4116-01 9 139369195 139369195 G - SEC16A Frame_Shift_Del p.P958Lfs*9 0.30 TCGA-B9-4116-01 9 35660717 35660717 G A CCDC107 Intron 0.62 TCGA-B9-4116-01 9 90501484 90501484 C T SPATA31E1 Silent p.T694T 0.22 TCGA-B9-4116-01 X 152710189 152710189 G T TREX2 Missense_Mutation p.L234M 0.31 deleterious_low_confidence(0.04) benign(0.38) TCGA-B9-4117-01 10 102255181 102255181 C G SEC31B Missense_Mutation p.E811D 0.50 tolerated(0.22) benign(0.003) TCGA-B9-4117-01 10 115608965 115608965 A G DCLRE1A Silent p.R633R 0.35 TCGA-B9-4117-01 11 126276866 126276866 G C ST3GAL4 Missense_Mutation p.E44Q 0.39 tolerated(0.36) benign(0.184) TCGA-B9-4117-01 11 47436836 47436836 C G SLC39A13 Intron 0.26 TCGA-B9-4117-01 11 57188512 57188512 C T SLC43A3 Missense_Mutation p.R155H 0.40 deleterious(0) probably_damaging(0.992) TCGA-B9-4117-01 12 102038482 102038482 A T MYBPC1 Missense_Mutation p.K266N 0.28 tolerated(0.06) probably_damaging(0.964) TCGA-B9-4117-01 12 112174685 112174685 T A ACAD10 Missense_Mutation p.Y562N 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-B9-4117-01 12 132551479 132551479 T A EP400 Missense_Mutation p.I2905N 0.42 probably_damaging(0.996) TCGA-B9-4117-01 13 21189985 21189985 T G IFT88 Missense_Mutation p.V398G 0.32 deleterious(0) benign(0.282) TCGA-B9-4117-01 13 21189988 21189988 T A IFT88 Missense_Mutation p.I399N 0.31 deleterious(0) probably_damaging(0.997) TCGA-B9-4117-01 14 95669398 95669398 T C CLMN Missense_Mutation p.Y763C 0.42 tolerated(0.2) benign(0.004) TCGA-B9-4117-01 15 76196905 76196905 G A FBXO22 Missense_Mutation p.G72S 0.30 tolerated(0.7) benign(0.005) TCGA-B9-4117-01 15 96869444 96869444 T C NR2F2 5'Flank 0.32 TCGA-B9-4117-01 16 3808859 3808859 A G CREBBP Missense_Mutation p.I1122T 0.27 unknown(0) TCGA-B9-4117-01 16 56970652 56970652 G T HERPUD1 Missense_Mutation p.E118D 0.56 tolerated(0.61) benign(0.007) TCGA-B9-4117-01 16 71674415 71674415 T A MARVELD3 Missense_Mutation p.Y240N 0.27 deleterious(0.02) probably_damaging(0.989) TCGA-B9-4117-01 16 72984698 72984698 G A ZFHX3 Silent p.G962G 0.23 TCGA-B9-4117-01 17 40344945 40344945 G T GHDC Missense_Mutation p.D122E 0.36 tolerated(0.31) benign(0.021) TCGA-B9-4117-01 17 40344972 40344972 C T GHDC Silent p.Q113Q 0.42 TCGA-B9-4117-01 19 2234038 2234038 G T PLEKHJ1 Missense_Mutation p.L115I 0.32 tolerated(0.06) possibly_damaging(0.566) TCGA-B9-4117-01 19 34921484 34921484 G C UBA2 Missense_Mutation p.D48H 0.32 deleterious(0) probably_damaging(1) TCGA-B9-4117-01 19 39039030 39039030 T C RYR1 Silent p.R4084R 0.33 TCGA-B9-4117-01 19 40366038 40366038 C G FCGBP Silent p.P4732P 0.31 TCGA-B9-4117-01 19 45515450 45515452 CCG - RELB In_Frame_Del p.R141del 0.68 TCGA-B9-4117-01 19 49422348 49422348 G A NUCB1 Missense_Mutation p.R293Q 0.38 deleterious(0.01) probably_damaging(0.934) TCGA-B9-4117-01 19 5131903 5131903 G C KDM4B Silent p.P597P 0.22 TCGA-B9-4117-01 19 53668284 53668284 T A ZNF665 Nonsense_Mutation p.K487* 0.32 TCGA-B9-4117-01 19 54783677 54783677 C T LILRB2 Silent p.E108E 0.30 TCGA-B9-4117-01 20 13695769 13695769 A T ESF1 Missense_Mutation p.L770M 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-B9-4117-01 20 32868894 32868914 CTGGGCTTGCTTCTCAGTTAG - AHCY In_Frame_Del p.L409_Q415del 0.34 TCGA-B9-4117-01 2 105858582 105858582 C G GPR45 Silent p.P89P 0.47 TCGA-B9-4117-01 2 122042681 122042681 A T TFCP2L1 Missense_Mutation p.L2H 0.64 deleterious(0) probably_damaging(0.984) TCGA-B9-4117-01 2 202626257 202626257 G A ALS2 Nonsense_Mutation p.Q154* 0.48 TCGA-B9-4117-01 2 27259433 27259433 T G TMEM214 Missense_Mutation p.F267V 0.30 tolerated(0.07) probably_damaging(0.966) TCGA-B9-4117-01 2 37454852 37454852 G A CEBPZ Missense_Mutation p.P495L 0.54 deleterious(0) probably_damaging(1) TCGA-B9-4117-01 3 122283388 122283388 G T DTX3L Missense_Mutation p.G39W 0.18 deleterious(0) probably_damaging(1) TCGA-B9-4117-01 5 126753406 126753406 G A MEGF10 Missense_Mutation p.G403R 0.46 deleterious(0) probably_damaging(1) TCGA-B9-4117-01 5 311485 311485 G A PDCD6 Missense_Mutation p.D149N 0.25 deleterious(0.01) possibly_damaging(0.839) TCGA-B9-4117-01 5 41911262 41911262 A T C5orf51 Missense_Mutation p.K156I 0.60 deleterious(0) probably_damaging(0.937) TCGA-B9-4117-01 5 6616902 6616902 G T NSUN2 Missense_Mutation p.T320K 0.45 deleterious(0) probably_damaging(0.999) TCGA-B9-4117-01 6 17507928 17507928 T C CAP2 Silent p.T167T 0.35 TCGA-B9-4117-01 7 116140377 116140377 T A CAV2 Missense_Mutation p.C72S 0.26 tolerated(0.16) probably_damaging(0.968) TCGA-B9-4117-01 7 43916495 43916495 C - URGCP Frame_Shift_Del p.G856Afs*36 0.27 TCGA-B9-4117-01 7 50778651 50778651 T A GRB10 Intron 0.52 TCGA-B9-4117-01 8 26505196 26505196 T A DPYSL2 Missense_Mutation p.N387K 0.61 deleterious(0) probably_damaging(0.997) TCGA-B9-4117-01 9 35711016 35711016 C T TLN1 Silent p.K1361K 0.26 TCGA-B9-4117-01 9 88940291 88940291 G C ZCCHC6 Missense_Mutation p.R583G 0.38 deleterious(0) probably_damaging(1) TCGA-B9-4117-01 X 100099033 100099033 T C NOX1 Missense_Mutation p.T535A 0.39 tolerated(1) benign(0.004) TCGA-B9-4117-01 X 1505385 1505385 A G SLC25A6 3'UTR 0.39 TCGA-B9-4117-01 X 43590945 43590945 A C MAOA Missense_Mutation p.K267T 0.34 deleterious(0.04) benign(0.049) TCGA-B9-4117-01 X 47002143 47002143 T G NDUFB11 Missense_Mutation p.N70H 0.04 deleterious(0) probably_damaging(1) TCGA-B9-4617-01 10 76602897 76602897 G T KAT6B Silent p.G94G 0.31 TCGA-B9-4617-01 11 108276173 108276173 T C C11orf65 Missense_Mutation p.I181M 0.45 deleterious(0.02) possibly_damaging(0.513) TCGA-B9-4617-01 11 126278238 126278238 C A ST3GAL4 Missense_Mutation p.D158E 0.33 tolerated(0.17) probably_damaging(0.999) TCGA-B9-4617-01 11 46897384 46897384 G A LRP4 Nonsense_Mutation p.Q1224* 0.39 TCGA-B9-4617-01 11 55703836 55703836 A T OR5I1 Missense_Mutation p.F14Y 0.43 deleterious(0) probably_damaging(0.952) TCGA-B9-4617-01 11 66411450 66411450 T A RBM14-RBM4 Silent p.A289A 0.38 TCGA-B9-4617-01 11 82877725 82877725 A G PCF11 Missense_Mutation p.R596G 0.44 deleterious(0) probably_damaging(0.997) TCGA-B9-4617-01 12 11035282 11035282 T A PRH1 Missense_Mutation p.E39V 0.28 tolerated_low_confidence(0.11) possibly_damaging(0.607) TCGA-B9-4617-01 12 12317326 12317326 T G LRP6 Missense_Mutation p.I645L 0.33 tolerated(0.08) possibly_damaging(0.811) TCGA-B9-4617-01 12 124093348 124093348 A T DDX55 Nonsense_Mutation p.R175* 0.62 TCGA-B9-4617-01 12 56349929 56349929 G A PMEL Silent p.L477L 0.52 TCGA-B9-4617-01 14 21546590 21546590 C G ARHGEF40 Missense_Mutation p.A730G 0.26 tolerated(0.05) benign(0.043) TCGA-B9-4617-01 14 23564436 23564436 A C ACIN1 Missense_Mutation p.N20K 0.46 probably_damaging(0.968) TCGA-B9-4617-01 14 24648037 24648037 C T REC8 Missense_Mutation p.P372L 0.37 tolerated(0.07) benign(0.002) TCGA-B9-4617-01 14 33291241 33291241 G A AKAP6 Missense_Mutation p.V1408M 0.43 tolerated_low_confidence(0.12) benign(0.014) TCGA-B9-4617-01 16 11859408 11859408 C A ZC3H7A Missense_Mutation p.K552N 0.30 tolerated(0.23) benign(0.004) TCGA-B9-4617-01 16 11876404 11876404 T A ZC3H7A 5'UTR 0.26 TCGA-B9-4617-01 16 48173154 48173154 A G ABCC12 Missense_Mutation p.C251R 0.28 deleterious(0.01) probably_damaging(0.969) TCGA-B9-4617-01 17 43351921 43351921 A G MAP3K14 RNA 0.18 TCGA-B9-4617-01 17 53398135 53398135 G A HLF Silent p.E261E 0.30 TCGA-B9-4617-01 17 62020429 62020429 G A SCN4A Missense_Mutation p.L1349F 0.28 tolerated(1) benign(0.001) TCGA-B9-4617-01 17 63049838 63049838 C A GNA13 Missense_Mutation p.V98L 0.53 deleterious(0.02) possibly_damaging(0.485) TCGA-B9-4617-01 17 694912 694912 A T RNMTL1 Missense_Mutation p.N289I 0.54 deleterious(0) possibly_damaging(0.596) TCGA-B9-4617-01 17 695133 695133 A C RNMTL1 Missense_Mutation p.S363R 0.61 deleterious(0) probably_damaging(0.999) TCGA-B9-4617-01 17 7230249 7230249 G A NEURL4 Silent p.N291N 0.55 TCGA-B9-4617-01 19 12903546 12903546 G A JUNB Missense_Mutation p.V321M 0.12 deleterious(0) probably_damaging(0.994) TCGA-B9-4617-01 19 43343788 43343788 A C PSG10P 3'Flank 0.19 TCGA-B9-4617-01 1 110768796 110768796 G A KCNC4 Silent p.R605R 0.37 TCGA-B9-4617-01 1 161090544 161090544 C A NIT1 Missense_Mutation p.P325T 0.43 deleterious_low_confidence(0.03) benign(0.11) TCGA-B9-4617-01 1 21585300 21585300 G T ECE1 Silent p.A216A 0.32 TCGA-B9-4617-01 1 27682529 27682529 G A MAP3K6 Silent p.G1233G 0.49 TCGA-B9-4617-01 20 20269294 20269294 G A C20orf26 Silent p.T946T 0.02 TCGA-B9-4617-01 20 467041 467041 T C CSNK2A1 Missense_Mutation p.S347G 0.24 tolerated_low_confidence(0.1) benign(0.002) TCGA-B9-4617-01 2 136680361 136680361 A C DARS Missense_Mutation p.I268M 0.46 deleterious(0) probably_damaging(0.942) TCGA-B9-4617-01 2 170460568 170460568 A G PPIG Missense_Mutation p.Q6R 0.38 deleterious(0.01) possibly_damaging(0.476) TCGA-B9-4617-01 2 174097114 174097114 G T MLTK Missense_Mutation p.R377L 0.52 deleterious(0) probably_damaging(0.968) TCGA-B9-4617-01 2 17699684 17699685 AC - RAD51AP2 5'UTR 0.34 TCGA-B9-4617-01 2 191827660 191827660 A G GLS Missense_Mutation p.D653G 0.42 tolerated_low_confidence(0.1) benign(0.011) TCGA-B9-4617-01 2 204154489 204154489 T C CYP20A1 Missense_Mutation p.Y325H 0.45 deleterious(0) probably_damaging(0.999) TCGA-B9-4617-01 2 242170343 242170343 G C HDLBP Missense_Mutation p.T1102S 0.42 tolerated(0.13) possibly_damaging(0.564) TCGA-B9-4617-01 3 127831784 127831784 G A RUVBL1 Missense_Mutation p.S103L 0.35 deleterious(0) probably_damaging(0.988) TCGA-B9-4617-01 3 44776081 44776081 A G ZNF501 Silent p.G56G 0.32 TCGA-B9-4617-01 4 85630153 85630153 A - WDFY3 Frame_Shift_Del p.L2709* 0.37 TCGA-B9-4617-01 5 132216640 132216640 A - AFF4 3'UTR 0.47 TCGA-B9-4617-01 5 141233645 141233645 C G PCDH1 Missense_Mutation p.A1226P 0.57 tolerated_low_confidence(0.26) benign(0.146) TCGA-B9-4617-01 5 168135045 168135045 T - SLIT3 Frame_Shift_Del p.N927Ifs*46 0.55 TCGA-B9-4617-01 5 70931074 70931075 - TA MCCC2 Splice_Site p.X333_splice 0.33 TCGA-B9-4617-01 6 155774565 155774565 C - NOX3 Frame_Shift_Del p.V105Sfs*5 0.32 TCGA-B9-4617-01 6 29054989 29054989 T G OR2B3 Missense_Mutation p.I13L 0.42 tolerated(0.08) benign(0.008) TCGA-B9-4617-01 6 7601644 7601644 G C SNRNP48 Missense_Mutation p.R161P 0.36 deleterious(0) probably_damaging(0.996) TCGA-B9-4617-01 7 100032973 100032973 T C PPP1R35 3'UTR 0.41 TCGA-B9-4617-01 7 101837159 101837159 G A CUX1 Missense_Mutation p.A383T 0.58 tolerated(0.1) unknown(0) TCGA-B9-4617-01 7 122774491 122774491 C G SLC13A1 Missense_Mutation p.W302S 0.47 deleterious(0) probably_damaging(1) TCGA-B9-4617-01 7 30118461 30118461 C T PLEKHA8 3'UTR 0.54 TCGA-B9-4617-01 7 40127807 40127807 T C CDK13 Missense_Mutation p.S1038P 0.46 tolerated(0.69) possibly_damaging(0.777) TCGA-B9-4617-01 9 104190767 104190770 TTTG - ALDOB Frame_Shift_Del p.N120Kfs*32 0.48 TCGA-B9-4617-01 9 123939598 123939598 T A CNTRL 3'UTR 0.46 TCGA-B9-4617-01 X 128885748 128885749 TC - XPNPEP2 Frame_Shift_Del p.I256Tfs*3 0.56 TCGA-B9-4617-01 X 30261219 30261219 G T MAGEB4 Missense_Mutation p.A323S 0.85 tolerated(0.06) unknown(0) TCGA-B9-4617-01 X 32867885 32867885 C T DMD Missense_Mutation p.R49H 0.10 probably_damaging(0.983) TCGA-B9-5155-01 10 103912048 103912048 C T NOLC1 5'UTR 0.38 TCGA-B9-5155-01 10 120967430 120967430 A T GRK5 Translation_Start_Site p.M1? 0.56 deleterious(0.02) possibly_damaging(0.558) TCGA-B9-5155-01 10 21804183 21804183 T C SKIDA1 Missense_Mutation p.I857V 0.47 tolerated(0.47) unknown(0) TCGA-B9-5155-01 10 24762791 24762791 G C KIAA1217 Missense_Mutation p.G494A 0.45 tolerated(0.8) probably_damaging(0.999) TCGA-B9-5155-01 10 3823844 3823844 C A KLF6 Missense_Mutation p.R222L 0.57 deleterious(0) unknown(0) TCGA-B9-5155-01 10 69714847 69714847 A G HERC4 Missense_Mutation p.L697P 0.29 deleterious(0) possibly_damaging(0.594) TCGA-B9-5155-01 10 70513756 70513756 G A CCAR1 Missense_Mutation p.M422I 0.47 deleterious(0.01) benign(0.023) TCGA-B9-5155-01 10 79745045 79745045 C T POLR3A Missense_Mutation p.G1042D 0.37 deleterious(0) probably_damaging(0.997) TCGA-B9-5155-01 10 88769761 88769761 T A RP11-96C23.10 Intron 0.41 TCGA-B9-5155-01 11 103124155 103124155 C T DYNC2H1 Missense_Mutation p.T3402I 0.30 probably_damaging(0.996) TCGA-B9-5155-01 11 117869597 117869597 A T IL10RA Silent p.P326P 0.38 TCGA-B9-5155-01 11 122930940 122930940 A G HSPA8 Missense_Mutation p.F150L 0.44 deleterious_low_confidence(0.01) benign(0.028) TCGA-B9-5155-01 11 26720065 26720065 A G SLC5A12 Missense_Mutation p.L280S 0.62 deleterious(0.01) probably_damaging(1) TCGA-B9-5155-01 11 34118752 34118752 A G CAPRIN1 Missense_Mutation p.D637G 0.47 deleterious(0) probably_damaging(0.99) TCGA-B9-5155-01 11 49175458 49175458 T - FOLH1 Frame_Shift_Del p.K637Rfs*23 0.29 TCGA-B9-5155-01 11 67400113 67400113 G A TBX10 Missense_Mutation p.P245L 0.04 deleterious(0) probably_damaging(1) TCGA-B9-5155-01 11 82642927 82642927 C A C11orf82 Missense_Mutation p.Q183K 0.37 deleterious(0.04) benign(0.437) TCGA-B9-5155-01 11 94224022 94224022 A C MRE11A Missense_Mutation p.L44V 0.38 deleterious(0) probably_damaging(0.965) TCGA-B9-5155-01 12 1219488 1219488 G A ERC1 Missense_Mutation p.S431N 0.48 tolerated(0.12) benign(0.291) TCGA-B9-5155-01 12 25308273 25308273 A G CASC1 Missense_Mutation p.L91S 0.38 deleterious(0.01) possibly_damaging(0.49) TCGA-B9-5155-01 12 51138542 51138542 G T DIP2B Nonsense_Mutation p.G1551* 0.57 TCGA-B9-5155-01 12 63994135 63994135 G T DPY19L2 Missense_Mutation p.T437K 0.41 deleterious(0) probably_damaging(0.97) TCGA-B9-5155-01 13 25009395 25009395 G - PARP4 Frame_Shift_Del p.P1295Qfs*53 0.33 TCGA-B9-5155-01 13 47269134 47269134 G A LRCH1 Silent p.S409S 0.47 TCGA-B9-5155-01 14 105621904 105621904 C T JAG2 Silent p.E261E 0.53 TCGA-B9-5155-01 14 106054709 106054709 G T IGHA2 Silent p.V8V 0.32 TCGA-B9-5155-01 14 31348144 31348144 G T COCH Missense_Mutation p.V123L 0.46 tolerated(0.11) benign(0.004) TCGA-B9-5155-01 14 57938247 57938247 T G C14orf105 Missense_Mutation p.K239N 0.49 deleterious(0.03) possibly_damaging(0.453) TCGA-B9-5155-01 14 73137911 73137911 G C DPF3 Missense_Mutation p.P336R 0.29 deleterious_low_confidence(0) unknown(0) TCGA-B9-5155-01 14 95081284 95081284 A G SERPINA3 Missense_Mutation p.D169G 0.50 deleterious(0.01) possibly_damaging(0.634) TCGA-B9-5155-01 15 101114203 101114205 TGA - LINS In_Frame_Del p.I291_Q292delinsM 0.42 TCGA-B9-5155-01 15 63548782 63548782 A T RAB8B Nonsense_Mutation p.R135* 0.51 TCGA-B9-5155-01 15 63953965 63953965 T G HERC1 Missense_Mutation p.T3053P 0.37 benign(0) TCGA-B9-5155-01 15 83935687 83935687 C A BNC1 Silent p.L112L 0.52 TCGA-B9-5155-01 15 89449052 89449053 - AA MFGE8 Frame_Shift_Ins p.L207Ffs*22 0.33 TCGA-B9-5155-01 16 30124831 30124831 C T GDPD3 5'UTR 0.27 TCGA-B9-5155-01 16 72992086 72992086 G C ZFHX3 Silent p.R653R 0.05 TCGA-B9-5155-01 16 89785598 89785598 A T VPS9D1 Intron 0.44 TCGA-B9-5155-01 16 89785599 89785599 A G VPS9D1 Intron 0.42 TCGA-B9-5155-01 17 18220177 18220177 T C SMCR8 Silent p.D358D 0.30 TCGA-B9-5155-01 17 26943748 26943748 G C KIAA0100 Missense_Mutation p.I2015M 0.63 deleterious(0) probably_damaging(0.968) TCGA-B9-5155-01 17 27959406 27959406 C G SSH2 Missense_Mutation p.A909P 0.57 tolerated_low_confidence(0.06) possibly_damaging(0.522) TCGA-B9-5155-01 17 33289325 33289325 C G ZNF830 Missense_Mutation p.P247R 0.58 deleterious(0) probably_damaging(1) TCGA-B9-5155-01 17 33310454 33310454 T C LIG3 Missense_Mutation p.F144L 0.68 deleterious(0.01) probably_damaging(0.988) TCGA-B9-5155-01 17 33520712 33520712 C T SLC35G3 Silent p.L205L 0.70 TCGA-B9-5155-01 17 79411728 79411728 C T RP11-1055B8.7 Silent p.P849P 0.31 TCGA-B9-5155-01 17 79411738 79411738 C T RP11-1055B8.7 Missense_Mutation p.P853S 0.32 probably_damaging(0.998) TCGA-B9-5155-01 18 44555040 44555040 A T TCEB3C Missense_Mutation p.L392I 0.06 deleterious(0) possibly_damaging(0.887) TCGA-B9-5155-01 19 1220439 1220439 A T STK11 Nonsense_Mutation p.K178* 0.47 TCGA-B9-5155-01 19 16513268 16513268 T C EPS15L1 Missense_Mutation p.E552G 0.49 deleterious(0.02) possibly_damaging(0.783) TCGA-B9-5155-01 19 22363129 22363129 A C ZNF676 Missense_Mutation p.F464V 0.40 deleterious(0) benign(0.042) TCGA-B9-5155-01 19 58083736 58083736 G C ZNF416 Missense_Mutation p.H512Q 0.48 deleterious(0) probably_damaging(1) TCGA-B9-5155-01 19 58083765 58083765 A G ZNF416 Missense_Mutation p.F503L 0.43 deleterious(0) probably_damaging(1) TCGA-B9-5155-01 1 112999957 112999957 C G CTTNBP2NL Missense_Mutation p.L615V 0.42 tolerated(0.15) benign(0.04) TCGA-B9-5155-01 1 12569165 12569165 G A VPS13D 3'UTR 0.55 TCGA-B9-5155-01 1 159804954 159804954 C A C1orf204 3'UTR 0.48 TCGA-B9-5155-01 1 159846354 159846354 C A CCDC19 Missense_Mutation p.R448S 0.48 deleterious(0.04) benign(0.124) TCGA-B9-5155-01 1 161011449 161011449 G A USF1 Missense_Mutation p.P155L 0.34 tolerated(0.08) benign(0.003) TCGA-B9-5155-01 1 161090529 161090529 G C NIT1 Missense_Mutation p.G320R 0.36 deleterious(0.02) benign(0.068) TCGA-B9-5155-01 1 171553267 171553267 C T PRRC2C Nonsense_Mutation p.Q2526* 0.44 TCGA-B9-5155-01 1 179503894 179503894 A T AXDND1 Missense_Mutation p.E943V 0.39 deleterious(0) possibly_damaging(0.788) TCGA-B9-5155-01 1 179609125 179609130 GTGTTC A TDRD5 Frame_Shift_Del p.V558Ifs*67 0.28 TCGA-B9-5155-01 1 18023596 18023596 G A ARHGEF10L Silent p.L1187L 0.50 TCGA-B9-5155-01 1 20063898 20063898 A G TMCO4 Missense_Mutation p.Y411H 0.57 deleterious(0) probably_damaging(0.995) TCGA-B9-5155-01 1 230907780 230907780 A G CAPN9 Silent p.R270R 0.43 TCGA-B9-5155-01 1 247712456 247712456 G A GCSAML 5'UTR 0.50 TCGA-B9-5155-01 1 249211266 249211267 - A PGBD2 Frame_Shift_Ins p.N162Kfs*53 0.33 TCGA-B9-5155-01 1 47685450 47685450 G T TAL1 Missense_Mutation p.T313K 0.49 deleterious_low_confidence(0.02) possibly_damaging(0.574) TCGA-B9-5155-01 1 85656155 85656155 T C SYDE2 Silent p.V342V 0.49 TCGA-B9-5155-01 1 87569257 87569257 G A HS2ST1 Missense_Mutation p.E277K 0.44 tolerated(0.23) benign(0.017) TCGA-B9-5155-01 1 90179254 90179254 T C LRRC8C Silent p.H375H 0.34 TCGA-B9-5155-01 1 92612759 92612759 C G BTBD8 Missense_Mutation p.S318C 0.43 deleterious(0.01) possibly_damaging(0.711) TCGA-B9-5155-01 20 30064536 30064536 G A REM1 Silent p.L96L 0.53 TCGA-B9-5155-01 20 33163023 33163023 C T PIGU Missense_Mutation p.C360Y 0.39 deleterious(0) benign(0.026) TCGA-B9-5155-01 20 51871026 51871026 T - TSHZ2 Frame_Shift_Del p.S345Lfs*36 0.37 TCGA-B9-5155-01 20 54974310 54974310 T A CSTF1 Silent p.S311S 0.45 TCGA-B9-5155-01 21 39671714 39671714 C T KCNJ15 Silent p.T177T 0.40 TCGA-B9-5155-01 22 30771620 30771620 A G CCDC157 Missense_Mutation p.I609V 0.09 tolerated(0.59) probably_damaging(0.949) TCGA-B9-5155-01 22 38881951 38881951 A G DDX17 Missense_Mutation p.S729P 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-B9-5155-01 2 10712118 10712118 T A NOL10 3'UTR 0.11 TCGA-B9-5155-01 2 139318408 139318408 G A SPOPL Missense_Mutation p.V250I 0.50 deleterious(0.01) possibly_damaging(0.865) TCGA-B9-5155-01 2 15735617 15735617 C T DDX1 Silent p.L24L 0.06 TCGA-B9-5155-01 2 159537000 159537001 - T PKP4 Frame_Shift_Ins p.L1131Ffs*8 0.31 TCGA-B9-5155-01 2 179701991 179701991 G A CCDC141 Missense_Mutation p.H1319Y 0.38 tolerated(0.14) benign(0.306) TCGA-B9-5155-01 2 225670917 225670917 T C DOCK10 Missense_Mutation p.Q1247R 0.47 tolerated(0.56) benign(0.04) TCGA-B9-5155-01 2 24046400 24046400 G C ATAD2B Missense_Mutation p.A620G 0.46 deleterious(0) probably_damaging(0.979) TCGA-B9-5155-01 2 24262142 24262142 C A C2orf44 Missense_Mutation p.V75F 0.46 deleterious(0) benign(0.331) TCGA-B9-5155-01 2 32530814 32530814 G C YIPF4 3'UTR 0.40 TCGA-B9-5155-01 2 70188627 70188627 A G ASPRV1 Missense_Mutation p.L65P 0.44 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-B9-5155-01 3 121500645 121500645 T C IQCB1 Missense_Mutation p.D452G 0.58 deleterious(0) probably_damaging(0.998) TCGA-B9-5155-01 3 195711414 195711414 T A SDHAP1 RNA 0.05 TCGA-B9-5155-01 3 30819676 30819676 T C GADL1 Missense_Mutation p.N463D 0.25 tolerated(0.18) benign(0.001) TCGA-B9-5155-01 3 38307350 38307350 A G SLC22A13 5'UTR 0.54 TCGA-B9-5155-01 3 47158197 47158197 C G SETD2 Missense_Mutation p.C1501S 0.57 deleterious(0) probably_damaging(0.996) TCGA-B9-5155-01 3 49149414 49149414 A G USP19 Missense_Mutation p.F943L 0.41 tolerated(0.11) possibly_damaging(0.819) TCGA-B9-5155-01 3 58514651 58514651 G A ACOX2 Missense_Mutation p.T342I 0.43 deleterious(0) probably_damaging(0.962) TCGA-B9-5155-01 4 114823444 114823444 C T ARSJ Missense_Mutation p.V596I 0.41 tolerated_low_confidence(0.6) benign(0) TCGA-B9-5155-01 4 13481115 13481115 A - RAB28 Frame_Shift_Del p.F37Lfs*9 0.32 TCGA-B9-5155-01 4 39196261 39196261 C G WDR19 Missense_Mutation p.R130G 0.15 deleterious(0) probably_damaging(0.979) TCGA-B9-5155-01 5 102503901 102503901 A G PPIP5K2 Missense_Mutation p.I730V 0.47 tolerated(0.37) benign(0.108) TCGA-B9-5155-01 5 112200371 112200371 A G SRP19 Silent p.R81R 0.43 TCGA-B9-5155-01 5 140563850 140563850 C T PCDHB16 Silent p.C572C 0.83 TCGA-B9-5155-01 5 33982376 33982376 T C SLC45A2 Missense_Mutation p.K176R 0.31 tolerated(0.17) benign(0.395) TCGA-B9-5155-01 5 40832426 40832426 A G RPL37 3'UTR 0.58 TCGA-B9-5155-01 5 43555937 43555937 A - PAIP1 Frame_Shift_Del p.Y144Tfs*23 0.31 TCGA-B9-5155-01 6 111213404 111213404 T C AMD1 Silent p.C156C 0.51 TCGA-B9-5155-01 6 134350343 134350343 C A SLC2A12 Missense_Mutation p.G207V 0.06 deleterious(0.01) probably_damaging(0.98) TCGA-B9-5155-01 6 1390675 1390675 C G FOXF2 Missense_Mutation p.L165V 0.43 deleterious(0.01) possibly_damaging(0.906) TCGA-B9-5155-01 6 16254914 16254914 T A GMPR Missense_Mutation p.F138Y 0.48 deleterious(0) probably_damaging(0.996) TCGA-B9-5155-01 6 17292212 17292212 G A RBM24 Silent p.G191G 0.32 TCGA-B9-5155-01 6 31605276 31605276 G A PRRC2A Silent p.G2129G 0.44 TCGA-B9-5155-01 6 51923120 51923120 C A PKHD1 Splice_Site p.X504_splice 0.40 TCGA-B9-5155-01 6 74119027 74119027 G A DDX43 Silent p.K412K 0.50 TCGA-B9-5155-01 7 103002482 103002482 G T PSMC2 Silent p.V123V 0.34 TCGA-B9-5155-01 7 141408685 141408685 A T WEE2 Nonsense_Mutation p.K43* 0.59 TCGA-B9-5155-01 7 16685258 16685258 C T ANKMY2 5'UTR 0.39 TCGA-B9-5155-01 7 40172563 40172563 A T MPLKIP 3'UTR 0.88 TCGA-B9-5155-01 7 90042218 90042218 A G CLDN12 Silent p.S76S 0.32 TCGA-B9-5155-01 7 95668696 95668696 C T DYNC1I1 Missense_Mutation p.S508L 0.65 deleterious(0) probably_damaging(0.998) TCGA-B9-5155-01 7 96651541 96651541 C G DLX5 Missense_Mutation p.E166Q 0.20 deleterious(0.01) benign(0.303) TCGA-B9-5155-01 7 99800113 99800113 T C STAG3 Missense_Mutation p.L867P 0.64 deleterious(0) probably_damaging(0.998) TCGA-B9-5155-01 8 122627047 122627047 C - HAS2 Frame_Shift_Del p.V321Cfs*2 0.36 TCGA-B9-5155-01 8 26267940 26267940 A G BNIP3L 3'UTR 0.40 TCGA-B9-5155-01 8 41794928 41794928 C A KAT6A Missense_Mutation p.E1066D 0.42 benign(0.384) TCGA-B9-5155-01 9 104238602 104238602 T C TMEM246 Missense_Mutation p.E258G 0.44 deleterious(0) probably_damaging(0.996) TCGA-B9-5155-01 9 123742457 123742457 A G C5 Silent p.L1188L 0.39 TCGA-B9-5155-01 9 136915699 136915699 C G BRD3 Missense_Mutation p.V171L 0.53 tolerated(0.32) benign(0.001) TCGA-B9-5155-01 9 33797829 33797829 G A PRSS3 Missense_Mutation p.R125H 0.32 tolerated(0.1) benign(0.017) TCGA-B9-5155-01 9 36169599 36169599 G A CCIN Missense_Mutation p.V34M 0.09 deleterious(0) probably_damaging(1) TCGA-B9-5155-01 9 98229471 98229471 C A PTCH1 Silent p.V829V 0.40 TCGA-B9-5156-01 10 102239758 102239758 G A WNT8B Missense_Mutation p.G77E 0.25 tolerated(0.97) benign(0.315) TCGA-B9-5156-01 11 130284505 130284505 G T ADAMTS8 Missense_Mutation p.A496D 0.31 deleterious(0) probably_damaging(0.922) TCGA-B9-5156-01 11 208831 208831 C A RIC8A 5'UTR 0.45 TCGA-B9-5156-01 11 7064099 7064099 A C NLRP14 Missense_Mutation p.Q281P 0.31 tolerated(0.05) probably_damaging(0.996) TCGA-B9-5156-01 11 76062971 76062971 A T PRKRIR Missense_Mutation p.L408H 0.30 tolerated(0.37) benign(0.052) TCGA-B9-5156-01 11 85445140 85445140 A T SYTL2 Missense_Mutation p.M410K 0.26 tolerated(0.92) benign(0.001) TCGA-B9-5156-01 12 104497066 104497066 T G HCFC2 3'UTR 0.32 TCGA-B9-5156-01 12 108641980 108641980 C T WSCD2 Missense_Mutation p.R520C 0.19 deleterious(0) probably_damaging(1) TCGA-B9-5156-01 12 26553127 26553127 G A ITPR2 Silent p.T2488T 0.21 TCGA-B9-5156-01 12 50149442 50149442 T C TMBIM6 Missense_Mutation p.S122P 0.21 tolerated(0.08) benign(0.315) TCGA-B9-5156-01 12 53824991 53824991 G C AMHR2 Missense_Mutation p.D486H 0.49 deleterious(0) probably_damaging(0.961) TCGA-B9-5156-01 13 111532214 111532214 A T ANKRD10 Missense_Mutation p.C345S 0.28 deleterious(0.01) possibly_damaging(0.767) TCGA-B9-5156-01 13 39452997 39452997 C G FREM2 Silent p.T2963T 0.27 TCGA-B9-5156-01 13 39587574 39587574 A - PROSER1 Frame_Shift_Del p.M606* 0.30 TCGA-B9-5156-01 14 23862897 23862897 T G MYH6 Missense_Mutation p.E969A 0.31 deleterious(0.01) possibly_damaging(0.524) TCGA-B9-5156-01 14 23897724 23897724 A C MYH7 Missense_Mutation p.I521M 0.08 deleterious(0) probably_damaging(0.989) TCGA-B9-5156-01 14 24805465 24805465 G T RIPK3 Silent p.P491P 0.26 TCGA-B9-5156-01 14 39524378 39524378 A T SEC23A Missense_Mutation p.L543H 0.28 deleterious(0) probably_damaging(0.935) TCGA-B9-5156-01 15 72104834 72104834 C T NR2E3 RNA 0.33 TCGA-B9-5156-01 15 75586089 75586089 C T GOLGA6D Missense_Mutation p.P538L 0.15 tolerated(1) benign(0.271) TCGA-B9-5156-01 16 1815160 1815160 G A MAPK8IP3 Silent p.L808L 0.08 TCGA-B9-5156-01 16 46766187 46766187 C T MYLK3 Silent p.R465R 0.52 TCGA-B9-5156-01 16 56435720 56435720 T C AMFR Missense_Mutation p.N337S 0.49 deleterious(0.03) benign(0.082) TCGA-B9-5156-01 17 28405254 28405255 - A EFCAB5 Frame_Shift_Ins p.P922Afs*24 0.15 TCGA-B9-5156-01 17 33903043 33903043 G A PEX12 Missense_Mutation p.P280S 0.44 deleterious(0.05) probably_damaging(0.998) TCGA-B9-5156-01 17 77077140 77077140 T C ENGASE Missense_Mutation p.L286P 0.58 deleterious(0) probably_damaging(0.999) TCGA-B9-5156-01 17 77077141 77077141 C G ENGASE Silent p.L286L 0.60 TCGA-B9-5156-01 18 48581177 48581177 G A SMAD4 Missense_Mutation p.E161K 0.20 deleterious(0.04) probably_damaging(0.91) TCGA-B9-5156-01 18 48581187 48581187 A G SMAD4 Missense_Mutation p.H164R 0.23 tolerated(0.36) benign(0.001) TCGA-B9-5156-01 18 59483577 59483577 C A RNF152 Missense_Mutation p.Q40H 0.45 tolerated(0.57) benign(0.328) TCGA-B9-5156-01 19 11144150 11144150 G C SMARCA4 Missense_Mutation p.R1244P 0.21 possibly_damaging(0.651) TCGA-B9-5156-01 19 11304538 11304538 A T KANK2 Missense_Mutation p.L73Q 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-B9-5156-01 19 12739559 12739559 C A ZNF791 Missense_Mutation p.H406N 0.38 deleterious(0) probably_damaging(0.996) TCGA-B9-5156-01 19 3527659 3527659 C A FZR1 Silent p.P167P 0.22 TCGA-B9-5156-01 19 37005333 37005333 G A ZNF260 Missense_Mutation p.H270Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-B9-5156-01 19 4117623 4117623 T G MAP2K2 Missense_Mutation p.N33H 0.39 deleterious(0.01) benign(0.016) TCGA-B9-5156-01 19 50063190 50063190 C G NOSIP Splice_Site p.X59_splice 0.23 TCGA-B9-5156-01 19 5082512 5082512 T C KDM4B Silent p.T305T 0.22 TCGA-B9-5156-01 19 5082513 5082513 C A KDM4B Missense_Mutation p.Q306K 0.19 benign(0.105) TCGA-B9-5156-01 1 144915498 144915498 T - PDE4DIP Frame_Shift_Del p.M643Wfs*10 0.18 TCGA-B9-5156-01 1 145075864 145075864 G T PDE4DIP 5'UTR 0.05 TCGA-B9-5156-01 1 145752477 145752477 G T PDZK1 Missense_Mutation p.M170I 0.30 tolerated(0.48) benign(0.158) TCGA-B9-5156-01 1 150390094 150390094 T C RPRD2 Silent p.N76N 0.35 TCGA-B9-5156-01 1 151395875 151395875 G T POGZ Missense_Mutation p.T559N 0.39 deleterious(0) possibly_damaging(0.893) TCGA-B9-5156-01 1 186158954 186158954 A G HMCN1 Missense_Mutation p.I5618V 0.27 benign(0.001) TCGA-B9-5156-01 1 19166252 19166252 C G TAS1R2 Silent p.L787L 0.41 TCGA-B9-5156-01 1 204588079 204588079 T C LRRN2 Missense_Mutation p.S348G 0.27 deleterious(0) probably_damaging(0.989) TCGA-B9-5156-01 1 229771856 229771856 C T URB2 Missense_Mutation p.S499F 0.33 tolerated(0.6) benign(0.121) TCGA-B9-5156-01 1 36354062 36354062 G A AGO1 Silent p.V20V 0.28 TCGA-B9-5156-01 1 45478626 45478626 C T UROD Missense_Mutation p.A23V 0.31 deleterious(0.03) probably_damaging(0.965) TCGA-B9-5156-01 20 42935425 42935425 G T FITM2 Missense_Mutation p.A210D 0.35 deleterious(0) probably_damaging(0.911) TCGA-B9-5156-01 20 61809914 61809914 G A MIR124-3 RNA 0.26 TCGA-B9-5156-01 22 36716872 36716872 A T MYH9 Missense_Mutation p.L280H 0.25 probably_damaging(0.91) TCGA-B9-5156-01 22 41489069 41489069 C G EP300 Missense_Mutation p.P21A 0.27 unknown(0) TCGA-B9-5156-01 2 136673870 136673871 - A DARS Frame_Shift_Ins p.R345Kfs*6 0.22 TCGA-B9-5156-01 2 145156027 145156027 G A ZEB2 Silent p.F909F 0.34 TCGA-B9-5156-01 2 160637446 160637446 T C LY75-CD302 Missense_Mutation p.K1722R 0.24 tolerated(0.18) possibly_damaging(0.469) TCGA-B9-5156-01 2 170843265 170843265 C G UBR3 Missense_Mutation p.R1249G 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-B9-5156-01 2 241468551 241468551 T G ANKMY1 Missense_Mutation p.N197H 0.29 tolerated(0.16) benign(0.03) TCGA-B9-5156-01 2 44507998 44507998 G T SLC3A1 Missense_Mutation p.D192Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-B9-5156-01 2 55908004 55908004 A G PNPT1 Missense_Mutation p.L168P 0.27 deleterious(0) possibly_damaging(0.869) TCGA-B9-5156-01 2 58431304 58431304 A G FANCL Silent p.S144S 0.27 TCGA-B9-5156-01 2 88482283 88482283 A G THNSL2 Missense_Mutation p.I290V 0.31 deleterious(0.04) possibly_damaging(0.531) TCGA-B9-5156-01 2 9570989 9570994 TTCTGA - CPSF3 In_Frame_Del p.S108_D109del 0.41 TCGA-B9-5156-01 2 96260855 96260855 A T TRIM43 Missense_Mutation p.N157Y 0.29 deleterious(0.02) benign(0.086) TCGA-B9-5156-01 3 112991328 112991328 A C BOC Missense_Mutation p.S247R 0.22 tolerated(0.25) benign(0.117) TCGA-B9-5156-01 3 128348859 128348859 C T RPN1 Missense_Mutation p.G324D 0.47 deleterious(0) probably_damaging(1) TCGA-B9-5156-01 3 142268491 142268491 C A ATR Missense_Mutation p.D1001Y 0.45 tolerated(1) benign(0.003) TCGA-B9-5156-01 3 45038724 45038724 G C EXOSC7 Missense_Mutation p.V134L 0.46 tolerated(0.2) benign(0.003) TCGA-B9-5156-01 3 78735047 78735047 T A ROBO1 Missense_Mutation p.Q397H 0.13 deleterious(0.03) benign(0.012) TCGA-B9-5156-01 4 104041471 104041471 T - CENPE Frame_Shift_Del p.N2388Ifs*18 0.25 TCGA-B9-5156-01 4 151827133 151827134 - T LRBA Frame_Shift_Ins p.S538Ifs*4 0.33 TCGA-B9-5156-01 4 15640266 15640266 T C FBXL5 Missense_Mutation p.I150V 0.32 deleterious(0.01) probably_damaging(0.934) TCGA-B9-5156-01 4 4323044 4323044 T G ZBTB49 3'UTR 0.26 TCGA-B9-5156-01 4 72620174 72620174 G A GC Silent p.L425L 0.31 TCGA-B9-5156-01 4 8229750 8229752 ACC - SH3TC1 In_Frame_Del p.T777del 0.29 TCGA-B9-5156-01 5 114515696 114515696 G A TRIM36 Silent p.I13I 0.35 TCGA-B9-5156-01 5 1282605 1282605 T G TERT Missense_Mutation p.K570Q 0.24 deleterious(0) probably_damaging(0.994) TCGA-B9-5156-01 5 140712438 140712438 A G PCDHGA1 Silent p.G729G 0.36 TCGA-B9-5156-01 5 145506033 145506033 T C LARS Missense_Mutation p.M986V 0.28 tolerated(0.1) benign(0.007) TCGA-B9-5156-01 5 149511592 149511592 G T PDGFRB Missense_Mutation p.A398D 0.22 deleterious(0) possibly_damaging(0.814) TCGA-B9-5156-01 5 176824798 176824800 CTT - SLC34A1 In_Frame_Del p.F480del 0.20 TCGA-B9-5156-01 5 31323226 31323226 T G CDH6 Silent p.T728T 0.14 TCGA-B9-5156-01 6 30954340 30954340 A T MUC21 Missense_Mutation p.S130C 0.25 deleterious(0.05) unknown(0) TCGA-B9-5156-01 6 4032504 4032504 A C PRPF4B Missense_Mutation p.K251N 0.39 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-B9-5156-01 6 51889440 51889440 C G PKHD1 Missense_Mutation p.R1723T 0.28 deleterious(0) probably_damaging(0.999) TCGA-B9-5156-01 7 107836289 107836289 G T NRCAM Missense_Mutation p.A460E 0.06 tolerated(0.41) benign(0.005) TCGA-B9-5156-01 7 148767680 148767680 G A ZNF786 Silent p.P728P 0.47 TCGA-B9-5156-01 7 148767681 148767681 G T ZNF786 Missense_Mutation p.P728H 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-B9-5156-01 7 150325338 150325338 G A GIMAP6 Silent p.I116I 0.22 TCGA-B9-5156-01 7 73530183 73530183 G A LIMK1 Missense_Mutation p.E488K 0.29 tolerated(0.08) possibly_damaging(0.869) TCGA-B9-5156-01 7 75633079 75633079 T C STYXL1 Missense_Mutation p.I232V 0.57 tolerated(0.08) benign(0.248) TCGA-B9-5156-01 7 75643205 75643205 T C STYXL1 Missense_Mutation p.D103G 0.48 tolerated(0.35) benign(0.004) TCGA-B9-5156-01 7 99669265 99669266 - C ZNF3 Frame_Shift_Ins p.E281Gfs*5 0.22 TCGA-B9-5156-01 8 52336162 52336162 C G PXDNL Missense_Mutation p.V590L 0.45 tolerated(0.24) benign(0.012) TCGA-B9-5156-01 8 94797545 94797545 T C TMEM67 Silent p.Y409Y 0.30 TCGA-B9-5156-01 8 94797546 94797546 A T TMEM67 Missense_Mutation p.I410F 0.30 deleterious(0.01) possibly_damaging(0.511) TCGA-B9-5156-01 9 132576423 132576423 T G TOR1A Missense_Mutation p.H276P 0.29 deleterious(0) probably_damaging(0.997) TCGA-B9-5156-01 9 139925712 139925712 C A FUT7 Missense_Mutation p.W160L 0.20 tolerated(0.31) benign(0) TCGA-B9-5156-01 X 40999924 40999924 C A USP9X Missense_Mutation p.L224I 0.66 deleterious(0.01) possibly_damaging(0.708) TCGA-B9-7268-01 10 101507060 101507060 A C CUTC Missense_Mutation p.L162F 0.22 deleterious(0.01) benign(0.076) TCGA-B9-7268-01 10 121598084 121598084 A G MCMBP Silent p.D459D 0.37 TCGA-B9-7268-01 10 90974746 90974746 G - LIPA Frame_Shift_Del p.A348Qfs*10 0.35 TCGA-B9-7268-01 11 118243839 118243839 G A UBE4A Missense_Mutation p.E261K 0.47 tolerated(0.55) benign(0.001) TCGA-B9-7268-01 11 119183001 119183001 A C MCAM Missense_Mutation p.S333R 0.34 tolerated(0.07) benign(0.439) TCGA-B9-7268-01 11 63971658 63971658 C A STIP1 3'UTR 0.51 TCGA-B9-7268-01 11 94862157 94862157 C G ENDOD1 Missense_Mutation p.S306C 0.41 deleterious(0.02) possibly_damaging(0.778) TCGA-B9-7268-01 12 102125409 102125409 T C SYCP3 Silent p.Q163Q 0.57 TCGA-B9-7268-01 12 120884511 120884511 C T GATC Missense_Mutation p.L45F 0.28 deleterious(0.04) benign(0.352) TCGA-B9-7268-01 12 12940182 12940182 C T APOLD1 Missense_Mutation p.R146W 0.24 deleterious(0.03) possibly_damaging(0.861) TCGA-B9-7268-01 12 131590407 131590407 C A GPR133 Silent p.G628G 0.55 TCGA-B9-7268-01 12 48866497 48866497 C A ANP32D Missense_Mutation p.S17Y 0.53 deleterious(0) benign(0.446) TCGA-B9-7268-01 12 53205646 53205646 C G KRT4 Missense_Mutation p.S193T 0.36 tolerated(0.08) benign(0.234) TCGA-B9-7268-01 12 85449852 85449852 G T LRRIQ1 Silent p.V427V 0.12 TCGA-B9-7268-01 12 95867834 95867834 G T METAP2 5'UTR 0.32 TCGA-B9-7268-01 14 61434959 61434959 T C MNAT1 Silent p.H274H 0.32 TCGA-B9-7268-01 16 1525020 1525020 C G CLCN7 5'UTR 0.36 TCGA-B9-7268-01 16 69402345 69402345 C G TERF2 Missense_Mutation p.S252T 0.37 tolerated(0.17) benign(0.002) TCGA-B9-7268-01 16 85715212 85715212 T C GINS2 Missense_Mutation p.E94G 0.52 deleterious(0.05) probably_damaging(1) TCGA-B9-7268-01 17 14005508 14005508 T A COX10 Silent p.L191L 0.64 TCGA-B9-7268-01 18 14513780 14513780 C A POTEC Nonsense_Mutation p.E472* 0.44 TCGA-B9-7268-01 19 11144469 11144469 C A SMARCA4 Silent p.G1267G 0.11 TCGA-B9-7268-01 19 35718874 35718874 C T FAM187B Missense_Mutation p.G237E 0.36 deleterious(0) probably_damaging(0.983) TCGA-B9-7268-01 19 40540794 40540794 G C ZNF780B Missense_Mutation p.Q658E 0.37 tolerated(1) possibly_damaging(0.523) TCGA-B9-7268-01 19 41930541 41930541 C G BCKDHA 3'UTR 0.51 TCGA-B9-7268-01 19 42492245 42492245 G A ATP1A3 Missense_Mutation p.P80L 0.11 tolerated(0.06) probably_damaging(1) TCGA-B9-7268-01 19 52660096 52660096 G A ZNF836 Silent p.G280G 0.39 TCGA-B9-7268-01 1 109302625 109302625 T G STXBP3 Missense_Mutation p.F119C 0.44 deleterious(0) probably_damaging(0.999) TCGA-B9-7268-01 1 150248209 150248212 GTGA - C1orf54 Splice_Site p.X63_splice 0.28 TCGA-B9-7268-01 1 151259373 151259373 C G ZNF687 Silent p.A202A 0.46 TCGA-B9-7268-01 1 153004965 153004965 C T SPRR1B Silent p.P48P 0.39 TCGA-B9-7268-01 1 24192102 24192102 T C FUCA1 Missense_Mutation p.T135A 0.21 deleterious(0) probably_damaging(0.992) TCGA-B9-7268-01 1 26528995 26528995 T C CATSPER4 Missense_Mutation p.S461P 0.13 tolerated(0.07) benign(0.002) TCGA-B9-7268-01 1 39797681 39797681 G C MACF1 Intron 0.39 TCGA-B9-7268-01 1 40029530 40029530 C T PABPC4 Silent p.L506L 0.45 TCGA-B9-7268-01 1 45115700 45115700 G T RNF220 Intron 0.44 TCGA-B9-7268-01 1 45250593 45250593 A G BEST4 Missense_Mutation p.I326T 0.09 deleterious(0) probably_damaging(0.999) TCGA-B9-7268-01 22 20791897 20791897 G T SCARF2 Missense_Mutation p.R49S 0.40 tolerated(0.11) benign(0.017) TCGA-B9-7268-01 22 22661564 22661564 C G BMS1P20 RNA 0.45 TCGA-B9-7268-01 22 36052428 36052428 A T APOL6 Intron 0.42 TCGA-B9-7268-01 2 152507333 152507333 C T NEB Missense_Mutation p.D2328N 0.50 probably_damaging(1) TCGA-B9-7268-01 2 173832042 173832042 G A RAPGEF4 Missense_Mutation p.D292N 0.53 deleterious(0.04) probably_damaging(0.998) TCGA-B9-7268-01 2 218712984 218712984 G C TNS1 Silent p.P627P 0.47 TCGA-B9-7268-01 2 241073371 241073371 C G MYEOV2 Missense_Mutation p.V70L 0.38 deleterious_low_confidence(0.01) benign(0.315) TCGA-B9-7268-01 2 33412001 33412006 GAAAAC AAAAA LTBP1 Frame_Shift_Del p.G427Efs*40 0.18 TCGA-B9-7268-01 2 85777685 85777685 G T GGCX Missense_Mutation p.R693S 0.48 tolerated(0.05) possibly_damaging(0.885) TCGA-B9-7268-01 3 113376680 113376680 G T KIAA2018 Silent p.G1283G 0.63 TCGA-B9-7268-01 3 52526307 52526307 C A NISCH Missense_Mutation p.L1442I 0.30 deleterious(0.01) possibly_damaging(0.899) TCGA-B9-7268-01 3 86115951 86115951 T C CADM2 3'Flank 0.31 TCGA-B9-7268-01 3 9877081 9877081 G A TTLL3 Missense_Mutation p.V886M 0.35 tolerated_low_confidence(0.06) benign(0.017) TCGA-B9-7268-01 4 123254840 123254840 A G KIAA1109 Missense_Mutation p.K3841R 0.52 possibly_damaging(0.621) TCGA-B9-7268-01 4 123843660 123843660 G A NUDT6 Missense_Mutation p.S23L 0.14 tolerated_low_confidence(0.65) benign(0) TCGA-B9-7268-01 4 169931208 169931208 G T CBR4 Silent p.S11S 0.50 TCGA-B9-7268-01 4 187540602 187540602 C T FAT1 Missense_Mutation p.V2380I 0.52 benign(0.05) TCGA-B9-7268-01 5 73136427 73136427 T C ARHGEF28 Silent p.S423S 0.48 TCGA-B9-7268-01 6 32940538 32940538 A G BRD2 5'UTR 0.38 TCGA-B9-7268-01 6 38704982 38704982 A T DNAH8 Missense_Mutation p.E84V 0.46 benign(0.003) TCGA-B9-7268-01 6 42665930 42665930 C T PRPH2 3'UTR 0.42 TCGA-B9-7268-01 7 150068863 150068864 - A REPIN1 Frame_Shift_Ins p.C236Mfs*24 0.14 TCGA-B9-7268-01 7 24745817 24745817 A T DFNA5 Missense_Mutation p.V390D 0.58 deleterious(0) probably_damaging(0.938) TCGA-B9-7268-01 8 68070755 68070755 G - CSPP1 Frame_Shift_Del p.A769Qfs*27 0.22 TCGA-B9-7268-01 8 8235103 8235103 A T SGK223 Silent p.T272T 0.62 TCGA-B9-7268-01 8 99215364 99215364 A T NIPAL2 Silent p.I284I 0.47 TCGA-B9-7268-01 9 117400851 117400851 T C C9orf91 Silent p.L232L 0.43 TCGA-B9-7268-01 X 149638972 149638972 C T MAMLD1 Missense_Mutation p.S351L 0.08 deleterious(0.01) benign(0.305) TCGA-B9-A44B-01 10 105205187 105205189 TTC - PDCD11 In_Frame_Del p.F1835del 0.29 TCGA-B9-A44B-01 10 120792066 120792066 C A NANOS1 3'UTR 0.23 TCGA-B9-A44B-01 10 35500415 35500415 C T CREM Intron 0.36 TCGA-B9-A44B-01 10 75187422 75187422 C A MSS51 Missense_Mutation p.R109I 0.51 deleterious(0) possibly_damaging(0.857) TCGA-B9-A44B-01 10 75533456 75533456 C T FUT11 Missense_Mutation p.A406V 0.51 tolerated(0.28) benign(0.005) TCGA-B9-A44B-01 10 76781667 76781667 G C KAT6B Missense_Mutation p.C1017S 0.35 benign(0.032) TCGA-B9-A44B-01 10 87484287 87484287 T G GRID1 Silent p.P560P 0.12 TCGA-B9-A44B-01 11 111179020 111179020 C G COLCA2 Missense_Mutation p.S108W 0.07 deleterious(0) probably_damaging(1) TCGA-B9-A44B-01 11 118509935 118509935 G A PHLDB1 Missense_Mutation p.R901K 0.82 tolerated(0.38) benign(0.006) TCGA-B9-A44B-01 11 33770331 33770331 C T FBXO3 Missense_Mutation p.G347E 0.25 deleterious(0) probably_damaging(1) TCGA-B9-A44B-01 11 57335094 57335094 G C UBE2L6 5'UTR 0.25 TCGA-B9-A44B-01 11 60778597 60778605 AGTCACTAT - CD6 In_Frame_Del p.V381_I383del 0.33 TCGA-B9-A44B-01 11 62491416 62491416 C - HNRNPUL2 Frame_Shift_Del p.E241Rfs*6 0.37 TCGA-B9-A44B-01 11 64694184 64694184 A G PPP2R5B Missense_Mutation p.D67G 0.16 deleterious(0) probably_damaging(0.965) TCGA-B9-A44B-01 11 6654032 6654032 G T DCHS1 Missense_Mutation p.P904Q 0.45 deleterious(0.03) probably_damaging(0.996) TCGA-B9-A44B-01 11 67220043 67220043 C T GPR152 Silent p.A51A 0.33 TCGA-B9-A44B-01 11 93797512 93797529 ATTCAGGGACACGGAATG - HEPHL1 In_Frame_Del p.S216_D221del 0.33 TCGA-B9-A44B-01 12 113593105 113593106 AG - CCDC42B Frame_Shift_Del p.K244Nfs*58 0.38 TCGA-B9-A44B-01 12 120653013 120653013 G - PXN Frame_Shift_Del p.Q347Sfs*13 0.31 TCGA-B9-A44B-01 12 1902856 1902856 A G CACNA2D4 Missense_Mutation p.C1127R 0.31 tolerated(0.31) benign(0.072) TCGA-B9-A44B-01 12 22670928 22670928 G T C2CD5 Missense_Mutation p.P315H 0.41 deleterious(0) benign(0.371) TCGA-B9-A44B-01 12 39726729 39726729 G C KIF21A Missense_Mutation p.Q890E 0.40 tolerated(0.42) benign(0.191) TCGA-B9-A44B-01 12 46205220 46205221 AA - ARID2 Frame_Shift_Del p.K102Sfs*8 0.28 TCGA-B9-A44B-01 12 49690229 49690229 C T PRPH Silent p.A207A 0.06 TCGA-B9-A44B-01 12 49951017 49951018 AC - KCNH3 Frame_Shift_Del p.L878Gfs*133 0.37 TCGA-B9-A44B-01 12 52754642 52754642 C T KRT85 Missense_Mutation p.A507T 0.43 tolerated_low_confidence(0.06) unknown(0) TCGA-B9-A44B-01 12 53346341 53346341 A G KRT18 Intron 0.33 TCGA-B9-A44B-01 12 6692008 6692011 ACTT - CHD4 Intron 0.46 TCGA-B9-A44B-01 12 6729174 6729174 A T LPAR5 3'UTR 0.36 TCGA-B9-A44B-01 12 70932007 70932007 A T PTPRB Missense_Mutation p.D1958E 0.40 deleterious(0) probably_damaging(0.998) TCGA-B9-A44B-01 12 94965249 94965249 T C TMCC3 Missense_Mutation p.I466V 0.47 tolerated(0.42) probably_damaging(0.986) TCGA-B9-A44B-01 13 32912283 32912283 A G BRCA2 Missense_Mutation p.K1264R 0.40 tolerated(0.28) benign(0.085) TCGA-B9-A44B-01 13 52951444 52951444 C G THSD1 3'UTR 0.29 TCGA-B9-A44B-01 13 95840715 95840715 C A ABCC4 Missense_Mutation p.A449S 0.19 tolerated(0.31) benign(0.054) TCGA-B9-A44B-01 13 99449739 99449739 T C DOCK9 Missense_Mutation p.N1988S 0.16 deleterious(0.01) possibly_damaging(0.579) TCGA-B9-A44B-01 14 102675669 102675669 C A WDR20 Missense_Mutation p.L419I 0.37 tolerated(0.07) possibly_damaging(0.668) TCGA-B9-A44B-01 14 23549484 23549484 C G ACIN1 Missense_Mutation p.E412Q 0.46 probably_damaging(0.99) TCGA-B9-A44B-01 14 55203876 55203876 C T SAMD4A Missense_Mutation p.L284F 0.41 tolerated(0.36) benign(0.117) TCGA-B9-A44B-01 14 64522891 64522891 C A SYNE2 Missense_Mutation p.A3325D 0.45 possibly_damaging(0.888) TCGA-B9-A44B-01 14 64610587 64610587 A G SYNE2 Missense_Mutation p.Y5135C 0.53 probably_damaging(0.982) TCGA-B9-A44B-01 14 64924942 64924942 T C MTHFD1 Missense_Mutation p.M910T 0.42 deleterious(0) benign(0.109) TCGA-B9-A44B-01 14 68159767 68159767 T G RDH11 Missense_Mutation p.K26T 0.36 deleterious(0.05) benign(0.357) TCGA-B9-A44B-01 15 102346642 102346642 G T OR4F6 Silent p.L240L 0.35 TCGA-B9-A44B-01 15 37002072 37002072 T A C15orf41 Missense_Mutation p.I209K 0.44 deleterious(0) probably_damaging(0.943) TCGA-B9-A44B-01 15 41657726 41657726 A G NUSAP1 Missense_Mutation p.T263A 0.37 tolerated(0.17) benign(0.036) TCGA-B9-A44B-01 15 43771711 43771711 T C TP53BP1 Silent p.E224E 0.35 TCGA-B9-A44B-01 15 43940128 43940128 G A CATSPER2 Silent p.I44I 0.41 TCGA-B9-A44B-01 15 64204316 64204316 C G DAPK2 Missense_Mutation p.R313S 0.54 deleterious(0) possibly_damaging(0.777) TCGA-B9-A44B-01 15 72432461 72432461 A T SENP8 Missense_Mutation p.Y166F 0.29 tolerated(0.11) possibly_damaging(0.79) TCGA-B9-A44B-01 15 72543559 72543559 G A PARP6 Missense_Mutation p.P433S 0.47 deleterious(0.05) probably_damaging(0.962) TCGA-B9-A44B-01 15 85121409 85121409 T - LINC00933 RNA 0.34 TCGA-B9-A44B-01 15 89801970 89801970 A - FANCI Frame_Shift_Del p.V42Lfs*6 0.31 TCGA-B9-A44B-01 16 23690422 23690422 C A PLK1 Missense_Mutation p.R57S 0.37 tolerated(0.13) benign(0.334) TCGA-B9-A44B-01 16 48311386 48311386 T G LONP2 Missense_Mutation p.L460R 0.33 deleterious(0) probably_damaging(1) TCGA-B9-A44B-01 16 70721819 70721819 G A VAC14 3'UTR 0.36 TCGA-B9-A44B-01 17 21208389 21208389 C A MAP2K3 Missense_Mutation p.N241K 0.15 tolerated(0.16) benign(0.139) TCGA-B9-A44B-01 17 26938587 26938587 A G SGK494 Missense_Mutation p.M270T 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-B9-A44B-01 17 28296149 28296149 A T EFCAB5 Missense_Mutation p.K177N 0.45 deleterious(0.05) probably_damaging(0.999) TCGA-B9-A44B-01 17 28961122 28961122 G A LRRC37BP1 RNA 0.42 TCGA-B9-A44B-01 17 40557359 40557359 T A PTRF Missense_Mutation p.K173N 0.18 deleterious(0.03) probably_damaging(0.978) TCGA-B9-A44B-01 17 43227953 43227953 G C HEXIM1 3'UTR 0.18 TCGA-B9-A44B-01 17 4789856 4789856 A G MINK1 Missense_Mutation p.E295G 0.31 deleterious(0) possibly_damaging(0.46) TCGA-B9-A44B-01 17 49302371 49302371 A C MBTD1 Missense_Mutation p.M51R 0.29 tolerated(0.06) possibly_damaging(0.837) TCGA-B9-A44B-01 17 55197616 55197616 G A AKAP1 Silent p.V881V 0.32 TCGA-B9-A44B-01 17 56382447 56382447 G A BZRAP1 Missense_Mutation p.P1840L 0.04 tolerated(0.07) benign(0.009) TCGA-B9-A44B-01 17 60042511 60042511 T C MED13 Missense_Mutation p.N1567S 0.39 tolerated(0.99) benign(0) TCGA-B9-A44B-01 17 61623068 61623068 A G KCNH6 Silent p.A930A 0.41 TCGA-B9-A44B-01 17 72768142 72768142 T G NAT9 Missense_Mutation p.N149T 0.43 deleterious(0) probably_damaging(1) TCGA-B9-A44B-01 17 78166392 78166392 G A CARD14 Missense_Mutation p.D444N 0.20 tolerated(0.14) benign(0.001) TCGA-B9-A44B-01 17 78449367 78449367 A - NPTX1 Frame_Shift_Del p.V199Afs*7 0.33 TCGA-B9-A44B-01 17 7910749 7910749 G A GUCY2D Missense_Mutation p.R490Q 0.07 tolerated(0.22) benign(0.019) TCGA-B9-A44B-01 18 29038453 29038453 T G DSG3 Missense_Mutation p.S88A 0.52 deleterious(0) possibly_damaging(0.765) TCGA-B9-A44B-01 19 10395998 10395998 C - ICAM1 3'UTR 0.26 TCGA-B9-A44B-01 19 1059069 1059069 G T ABCA7 Silent p.G1816G 0.24 TCGA-B9-A44B-01 19 12502558 12502558 C T ZNF799 Silent p.T218T 0.38 TCGA-B9-A44B-01 19 14517156 14517156 G T CD97 Missense_Mutation p.C612F 0.59 deleterious(0) probably_damaging(0.961) TCGA-B9-A44B-01 19 16548668 16548669 AT - EPS15L1 Frame_Shift_Del p.Y74Cfs*14 0.20 TCGA-B9-A44B-01 19 18288015 18288015 C T IFI30 Silent p.R183R 0.21 TCGA-B9-A44B-01 19 21106164 21106164 G C ZNF85 5'UTR 0.23 TCGA-B9-A44B-01 19 32873421 32873421 T A ZNF507 Silent p.S803S 0.53 TCGA-B9-A44B-01 19 3546268 3546268 G A MFSD12 Silent p.L393L 0.33 TCGA-B9-A44B-01 19 45016957 45016957 C T CEACAM20 RNA 0.04 TCGA-B9-A44B-01 1 110029635 110029635 G C ATXN7L2 Missense_Mutation p.R102T 0.13 deleterious(0) probably_damaging(0.995) TCGA-B9-A44B-01 1 112999419 112999419 G - CTTNBP2NL Frame_Shift_Del p.K435Nfs*19 0.36 TCGA-B9-A44B-01 1 1179848 1179848 G C FAM132A Silent p.S69S 0.19 TCGA-B9-A44B-01 1 11848880 11848880 C T MTHFR 3'UTR 0.60 TCGA-B9-A44B-01 1 151688462 151688462 C T CELF3 Missense_Mutation p.G12E 0.65 deleterious(0) probably_damaging(1) TCGA-B9-A44B-01 1 153012516 153012516 G A SPRR2D 3'UTR 0.03 TCGA-B9-A44B-01 1 156707893 156707893 G A MRPL24 Missense_Mutation p.R105W 0.19 deleterious(0.03) benign(0.001) TCGA-B9-A44B-01 1 16258337 16258337 T G SPEN Missense_Mutation p.L1868V 0.72 probably_damaging(0.99) TCGA-B9-A44B-01 1 179460842 179460842 A C AXDND1 Missense_Mutation p.K754T 0.17 tolerated(0.08) benign(0.023) TCGA-B9-A44B-01 1 182026912 182026918 TTCCTCT - ZNF648 Frame_Shift_Del p.E77Rfs*29 0.22 TCGA-B9-A44B-01 1 200376815 200376815 T C ZNF281 Silent p.Q673Q 0.19 TCGA-B9-A44B-01 1 24840954 24840954 A - RCAN3 Frame_Shift_Del p.N32Mfs*8 0.33 TCGA-B9-A44B-01 1 38027791 38027793 AGA - DNALI1 In_Frame_Del p.K253del 0.56 TCGA-B9-A44B-01 1 41482995 41482995 G T SLFNL1 Missense_Mutation p.Q338K 0.12 deleterious(0.01) benign(0.102) TCGA-B9-A44B-01 1 47144193 47144194 AA - EFCAB14 Frame_Shift_Del p.F476* 0.29 TCGA-B9-A44B-01 1 6142274 6142274 C A KCNAB2 Missense_Mutation p.T107N 0.39 deleterious(0.01) possibly_damaging(0.868) TCGA-B9-A44B-01 1 95360468 95360468 T C SLC44A3 Missense_Mutation p.I651T 0.20 tolerated(0.05) benign(0.003) TCGA-B9-A44B-01 20 26061816 26061816 C A FAM182A RNA 0.18 TCGA-B9-A44B-01 20 32245622 32245622 G C NECAB3 3'UTR 0.21 TCGA-B9-A44B-01 20 40143495 40143495 C A CHD6 Silent p.T217T 0.37 TCGA-B9-A44B-01 20 42328636 42328636 C T MYBL2 Silent p.I301I 0.40 TCGA-B9-A44B-01 20 44181865 44181865 G T WFDC8 Missense_Mutation p.P166T 0.39 tolerated(0.11) possibly_damaging(0.876) TCGA-B9-A44B-01 20 49458324 49458324 C T BCAS4 Missense_Mutation p.H126Y 0.43 tolerated(0.13) possibly_damaging(0.854) TCGA-B9-A44B-01 20 61389632 61389632 G A NTSR1 Missense_Mutation p.A311T 0.05 deleterious(0.02) probably_damaging(0.997) TCGA-B9-A44B-01 21 33757860 33757860 T G URB1 Missense_Mutation p.E92D 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-B9-A44B-01 22 16266950 16266950 G T POTEH Missense_Mutation p.T500N 0.10 tolerated(0.23) benign(0.004) TCGA-B9-A44B-01 22 18029082 18029082 G A CECR2 Missense_Mutation p.A1348T 0.48 tolerated(0.12) benign(0.02) TCGA-B9-A44B-01 22 20128194 20128194 A T ZDHHC8 Missense_Mutation p.N239Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-B9-A44B-01 22 31601067 31601067 T C RNF185 3'UTR 0.33 TCGA-B9-A44B-01 22 32555017 32555019 CTG - C22orf42 In_Frame_Del p.Q62del 0.25 TCGA-B9-A44B-01 2 107073432 107073432 G A RGPD3 Silent p.L134L 0.39 TCGA-B9-A44B-01 2 114391751 114391751 G A RABL2A Silent p.T53T 0.03 TCGA-B9-A44B-01 2 166153545 166153545 A T SCN2A Nonsense_Mutation p.K96* 0.52 TCGA-B9-A44B-01 2 170055306 170055306 A G LRP2 Silent p.P2856P 0.33 TCGA-B9-A44B-01 2 197784853 197784853 G T PGAP1 Missense_Mutation p.L57M 0.49 deleterious(0.01) possibly_damaging(0.823) TCGA-B9-A44B-01 2 20818857 20818857 C G HS1BP3 Missense_Mutation p.A357P 0.47 deleterious(0.04) benign(0.015) TCGA-B9-A44B-01 2 238275565 238275565 C T COL6A3 Silent p.S1755S 0.04 TCGA-B9-A44B-01 2 242407764 242407764 C G FARP2 Silent p.P701P 0.39 TCGA-B9-A44B-01 2 27850548 27850548 A G CCDC121 Missense_Mutation p.L202P 0.29 deleterious(0.01) probably_damaging(0.964) TCGA-B9-A44B-01 2 29420473 29420473 C A ALK Missense_Mutation p.Q1336H 0.44 deleterious(0) probably_damaging(0.99) TCGA-B9-A44B-01 2 74146708 74146708 G A ACTG2 3'UTR 0.34 TCGA-B9-A44B-01 2 96906416 96906416 C A STARD7-AS1 RNA 0.31 TCGA-B9-A44B-01 3 12611673 12611673 G A MKRN2 Missense_Mutation p.V87I 0.92 tolerated(0.74) benign(0.001) TCGA-B9-A44B-01 3 184090635 184090635 A C THPO Missense_Mutation p.I243S 0.32 tolerated_low_confidence(0.34) benign(0.018) TCGA-B9-A44B-01 3 186503770 186503770 G T EIF4A2 Missense_Mutation p.Q149H 0.22 deleterious(0.03) possibly_damaging(0.623) TCGA-B9-A44B-01 3 39453553 39453556 GTAT - RPSA Splice_Site p.X265_splice 0.83 TCGA-B9-A44B-01 3 47163966 47163967 - C SETD2 Frame_Shift_Ins p.F721Ifs*5 0.41 TCGA-B9-A44B-01 3 52181040 52181040 C A POC1A Missense_Mutation p.S176I 0.24 deleterious(0) possibly_damaging(0.835) TCGA-B9-A44B-01 3 52637647 52637647 G T PBRM1 Missense_Mutation p.A890E 0.89 deleterious(0) probably_damaging(0.988) TCGA-B9-A44B-01 3 57743531 57743531 A G SLMAP Silent p.L51L 0.83 TCGA-B9-A44B-01 3 9879640 9879640 C A RPUSD3 3'UTR 0.94 TCGA-B9-A44B-01 4 41988028 41988028 G C DCAF4L1 3'UTR 0.41 TCGA-B9-A44B-01 4 6473985 6473985 G A PPP2R2C 5'UTR 0.43 TCGA-B9-A44B-01 4 68777111 68777112 GT A TMPRSS11A Frame_Shift_Del p.Y405Lfs*4 0.35 TCGA-B9-A44B-01 5 126860514 126860514 G C PRRC1 Missense_Mutation p.G132A 0.47 tolerated_low_confidence(0.09) probably_damaging(0.999) TCGA-B9-A44B-01 5 138643239 138643239 G A MATR3 Missense_Mutation p.M45I 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.48) TCGA-B9-A44B-01 5 148730494 148730494 C T GRPEL2 Silent p.F109F 0.24 TCGA-B9-A44B-01 5 16465479 16465479 A G ZNF622 Missense_Mutation p.V99A 0.20 tolerated(0.07) benign(0.096) TCGA-B9-A44B-01 5 16685914 16685914 A C MYO10 Missense_Mutation p.V1308G 0.43 deleterious(0) probably_damaging(0.998) TCGA-B9-A44B-01 5 26915851 26915851 C T CDH9 Missense_Mutation p.R137Q 0.33 tolerated(0.23) benign(0.236) TCGA-B9-A44B-01 5 37834925 37834925 C A GDNF Splice_Site p.X9_splice 0.41 TCGA-B9-A44B-01 6 105298839 105298839 A T HACE1 Missense_Mutation p.F55Y 0.57 deleterious(0.01) probably_damaging(0.992) TCGA-B9-A44B-01 6 107827527 107827527 C A SOBP Missense_Mutation p.A106D 0.16 tolerated(0.09) benign(0.302) TCGA-B9-A44B-01 6 118015319 118015319 G A NUS1 Missense_Mutation p.V223I 0.59 tolerated(0.09) benign(0.032) TCGA-B9-A44B-01 6 142691578 142691578 C T GPR126 Silent p.V239V 0.20 TCGA-B9-A44B-01 6 160445676 160445676 T C IGF2R Missense_Mutation p.Y196H 0.27 tolerated(0.07) possibly_damaging(0.711) TCGA-B9-A44B-01 6 25850278 25850278 A - SLC17A3 Frame_Shift_Del p.L374* 0.30 TCGA-B9-A44B-01 6 30681013 30681013 C A MDC1 Missense_Mutation p.A236S 0.05 tolerated(0.07) probably_damaging(0.978) TCGA-B9-A44B-01 6 35086064 35086064 T G TCP11 Silent p.T511T 0.42 TCGA-B9-A44B-01 6 43041648 43041648 T CGACAACAC KLC4 Frame_Shift_Ins p.M603Tfs*10 0.35 TCGA-B9-A44B-01 6 43480515 43480515 A G YIPF3 Missense_Mutation p.L255P 0.39 tolerated(0.19) probably_damaging(0.968) TCGA-B9-A44B-01 6 84371294 84371294 A T SNAP91 Missense_Mutation p.Y127N 0.60 deleterious(0) unknown(0) TCGA-B9-A44B-01 6 88775941 88775941 C A SPACA1 Missense_Mutation p.P258H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.789) TCGA-B9-A44B-01 6 90402313 90402313 G C MDN1 Nonsense_Mutation p.S3479* 0.21 TCGA-B9-A44B-01 7 106799967 106799967 T A PRKAR2B Nonsense_Mutation p.Y399* 0.39 TCGA-B9-A44B-01 7 110765461 110765461 A T LRRN3 3'UTR 0.45 TCGA-B9-A44B-01 7 140380887 140380887 G T ADCK2 Missense_Mutation p.D419Y 0.42 deleterious(0) possibly_damaging(0.702) TCGA-B9-A44B-01 7 155534581 155534582 - A RBM33 Frame_Shift_Ins p.N707Kfs*4 0.27 TCGA-B9-A44B-01 7 31378439 31378439 T A NEUROD6 Missense_Mutation p.E148D 0.42 deleterious(0) possibly_damaging(0.636) TCGA-B9-A44B-01 7 31378440 31378440 T A NEUROD6 Missense_Mutation p.E148V 0.41 deleterious(0) possibly_damaging(0.788) TCGA-B9-A44B-01 7 31682718 31682718 C A CCDC129 Missense_Mutation p.D604E 0.45 tolerated(0.35) benign(0.287) TCGA-B9-A44B-01 7 35733937 35733937 C T HERPUD2 Missense_Mutation p.D2N 0.37 tolerated(0.08) benign(0.311) TCGA-B9-A44B-01 7 44620579 44620580 - ATAT TMED4 Intron 0.24 TCGA-B9-A44B-01 7 47853600 47853600 C T PKD1L1 Missense_Mutation p.G2368R 0.49 deleterious(0) probably_damaging(0.989) TCGA-B9-A44B-01 7 75511278 75511278 G A RHBDD2 Missense_Mutation p.V104M 0.05 deleterious(0.04) possibly_damaging(0.456) TCGA-B9-A44B-01 7 76240801 76240801 G T POMZP3 Missense_Mutation p.S182Y 0.32 tolerated_low_confidence(0.26) benign(0.208) TCGA-B9-A44B-01 7 82579041 82579041 T - PCLO Frame_Shift_Del p.V3622Sfs*15 0.29 TCGA-B9-A44B-01 7 82585266 82585266 T C PCLO Missense_Mutation p.K1668R 0.44 unknown(0) TCGA-B9-A44B-01 7 91957150 91957150 T C ANKIB1 Silent p.I241I 0.47 TCGA-B9-A44B-01 8 101276971 101276971 G A RNF19A Missense_Mutation p.R412W 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-B9-A44B-01 8 108970372 108970372 T C RSPO2 Silent p.T184T 0.46 TCGA-B9-A44B-01 8 120651056 120651056 C T ENPP2 5'UTR 0.38 TCGA-B9-A44B-01 8 142486196 142486196 G A MROH5 Intron 0.53 TCGA-B9-A44B-01 8 144661995 144661995 C G EEF1D Missense_Mutation p.Q637H 0.38 deleterious(0.01) possibly_damaging(0.906) TCGA-B9-A44B-01 8 27328706 27328706 C G CHRNA2 5'UTR 0.45 TCGA-B9-A44B-01 8 33246682 33246683 - A FUT10 Frame_Shift_Ins p.R338Qfs*6 0.28 TCGA-B9-A44B-01 9 129596559 129596559 T C ZBTB43 3'UTR 0.81 TCGA-B9-A44B-01 9 36583634 36583634 A G MELK Silent p.A23A 0.43 TCGA-B9-A44B-01 X 103349337 103349337 C T SLC25A53 Missense_Mutation p.G202S 0.13 tolerated(0.53) benign(0.006) TCGA-B9-A44B-01 X 153276560 153276560 G - IRAK1 3'UTR 0.44 TCGA-B9-A44B-01 X 23723676 23723676 G A ACOT9 Silent p.F323F 0.75 TCGA-B9-A44B-01 X 24744126 24744126 T A POLA1 Missense_Mutation p.I443K 0.77 tolerated(1) benign(0.007) TCGA-B9-A44B-01 X 67283721 67283721 G A OPHN1 Silent p.P711P 0.92 TCGA-B9-A5W7-01 11 64883476 64883476 A G TM7SF2 Missense_Mutation p.Q403R 0.24 tolerated(0.11) benign(0.003) TCGA-B9-A5W7-01 11 72945937 72945937 C T P2RY2 Missense_Mutation p.R245C 0.38 deleterious(0) benign(0.133) TCGA-B9-A5W7-01 14 103570687 103570687 G A EXOC3L4 Silent p.Q415Q 0.05 TCGA-B9-A5W7-01 14 104639376 104639376 G A KIF26A Missense_Mutation p.A495T 0.09 deleterious(0) possibly_damaging(0.749) TCGA-B9-A5W7-01 14 20296302 20296302 C A OR4N2 Missense_Mutation p.A232E 0.16 deleterious(0.02) benign(0.005) TCGA-B9-A5W7-01 17 8272373 8272374 CT - KRBA2 3'UTR 0.38 TCGA-B9-A5W7-01 19 34890973 34890973 T A GPI 3'UTR 0.42 TCGA-B9-A5W7-01 19 42525580 42525580 G A GRIK5 Missense_Mutation p.R582C 0.26 deleterious(0.02) probably_damaging(0.94) TCGA-B9-A5W7-01 19 43568407 43568407 T C PSG2 3'UTR 0.20 TCGA-B9-A5W7-01 1 38261401 38261401 C T MANEAL Intron 0.12 TCGA-B9-A5W7-01 22 39388453 39388453 G T APOBEC3B 3'UTR 0.39 TCGA-B9-A5W7-01 22 43569808 43569808 G T TTLL12 Nonsense_Mutation p.C418* 0.16 TCGA-B9-A5W7-01 2 279929 279929 A T FAM150B 3'UTR 0.12 TCGA-B9-A5W7-01 2 54855278 54855278 G C SPTBN1 Silent p.V563V 0.36 TCGA-B9-A5W7-01 3 130425829 130425831 GAG - PIK3R4 In_Frame_Del p.S895del 0.11 TCGA-B9-A5W7-01 4 83996480 83996480 A - COPS4 Frame_Shift_Del p.Q373Rfs*9 0.18 TCGA-B9-A5W7-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.16 TCGA-B9-A5W7-01 6 37606390 37606390 C T MDGA1 Missense_Mutation p.A864T 0.05 deleterious(0.03) benign(0.284) TCGA-B9-A5W7-01 6 57393114 57393114 A G PRIM2 Missense_Mutation p.H255R 0.12 tolerated(0.21) benign(0.034) TCGA-B9-A5W7-01 7 128804350 128804350 C A TSPAN33 Silent p.A133A 0.64 TCGA-B9-A5W7-01 7 56151013 56151013 A C PHKG1 Missense_Mutation p.F201V 0.22 deleterious(0) possibly_damaging(0.767) TCGA-B9-A5W7-01 7 81588631 81588631 T G CACNA2D1 Missense_Mutation p.Y1040S 0.23 deleterious(0) probably_damaging(0.986) TCGA-B9-A5W7-01 9 139327715 139327715 G T INPP5E Missense_Mutation p.R351S 0.19 tolerated(0.05) possibly_damaging(0.474) TCGA-B9-A5W7-01 9 37919732 37919732 G T SHB 3'UTR 0.08 TCGA-B9-A5W7-01 X 70338525 70338525 T C MED12 5'Flank 0.06 TCGA-B9-A5W8-01 10 108371705 108371705 C A SORCS1 Missense_Mutation p.R999S 0.23 deleterious(0.01) benign(0.196) TCGA-B9-A5W8-01 10 115917414 115917414 G A C10orf118 Nonsense_Mutation p.Q220* 0.25 TCGA-B9-A5W8-01 11 58601915 58601915 T C GLYATL2 Missense_Mutation p.K291R 0.29 tolerated(0.24) benign(0.004) TCGA-B9-A5W8-01 12 118462664 118462664 A - RFC5 Frame_Shift_Del p.K144Nfs*34 0.19 TCGA-B9-A5W8-01 12 47170779 47170779 C T SLC38A4 Missense_Mutation p.R361Q 0.24 tolerated(0.58) benign(0.221) TCGA-B9-A5W8-01 12 51319010 51319030 GGAGTTTGCGGGCCCCTCCGG - METTL7A In_Frame_Del p.E64_G70del 0.27 TCGA-B9-A5W8-01 12 56647586 56647586 T A ANKRD52 Splice_Site p.X303_splice 0.05 TCGA-B9-A5W8-01 12 64808728 64808728 C A XPOT Silent p.A34A 0.16 TCGA-B9-A5W8-01 12 7526000 7526000 G T CD163L1 Missense_Mutation p.H1216N 0.15 tolerated(0.09) possibly_damaging(0.707) TCGA-B9-A5W8-01 12 7526001 7526001 C T CD163L1 Silent p.T1215T 0.16 TCGA-B9-A5W8-01 12 94975986 94975987 - A TMCC3 Frame_Shift_Ins p.Y136Lfs*15 0.12 TCGA-B9-A5W8-01 12 95907438 95907438 A G METAP2 Missense_Mutation p.T399A 0.22 tolerated(1) benign(0.003) TCGA-B9-A5W8-01 14 24528535 24528547 CATCAATGCCCTG - LRRC16B Frame_Shift_Del p.I562Afs*11 0.26 TCGA-B9-A5W8-01 14 36103887 36103887 G A RALGAPA1 Missense_Mutation p.A1457V 0.19 tolerated(0.18) benign(0.228) TCGA-B9-A5W8-01 14 93650105 93650105 C A MOAP1 Missense_Mutation p.K161N 0.10 tolerated(0.25) benign(0.012) TCGA-B9-A5W8-01 16 22358803 22358803 A G CDR2 Missense_Mutation p.F283S 0.24 tolerated(0.55) benign(0.283) TCGA-B9-A5W8-01 16 30794425 30794425 G A ZNF629 Silent p.G408G 0.28 TCGA-B9-A5W8-01 16 69727578 69727578 C T NFAT5 Nonsense_Mutation p.Q1284* 0.25 TCGA-B9-A5W8-01 16 83994295 83994295 G A OSGIN1 Nonsense_Mutation p.W109* 0.33 TCGA-B9-A5W8-01 16 86565821 86565821 G A MTHFSD Silent p.D316D 0.18 TCGA-B9-A5W8-01 17 48541577 48541577 A G ACSF2 Splice_Site p.X380_splice 0.34 TCGA-B9-A5W8-01 17 8424548 8424548 G A MYH10 Silent p.G671G 0.24 TCGA-B9-A5W8-01 19 11134286 11134286 C G SMARCA4 Silent p.V984V 0.18 TCGA-B9-A5W8-01 19 47856826 47856826 T C DHX34 Missense_Mutation p.V180A 0.33 deleterious(0) probably_damaging(0.999) TCGA-B9-A5W8-01 19 55143956 55143956 A G LILRB1 Missense_Mutation p.I235V 0.31 tolerated(1) benign(0) TCGA-B9-A5W8-01 1 164761953 164761953 C T PBX1 Missense_Mutation p.T163M 0.50 deleterious(0.05) probably_damaging(0.954) TCGA-B9-A5W8-01 1 223438095 223438095 G A SUSD4 Missense_Mutation p.P201S 0.18 tolerated(0.07) possibly_damaging(0.741) TCGA-B9-A5W8-01 1 2938841 2938841 C A ACTRT2 Silent p.L197L 0.37 TCGA-B9-A5W8-01 20 42984469 42984469 G T R3HDML 3'Flank 0.22 TCGA-B9-A5W8-01 20 44533615 44533615 G A PLTP Missense_Mutation p.A283V 0.28 deleterious(0) probably_damaging(0.987) TCGA-B9-A5W8-01 22 24628898 24628898 G C GGT5 Missense_Mutation p.F163L 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-B9-A5W8-01 2 182543048 182543051 GGTG - NEUROD1 Frame_Shift_Del p.T180Pfs*81 0.32 TCGA-B9-A5W8-01 2 233651899 233651899 G C GIGYF2 Missense_Mutation p.G213A 0.17 probably_damaging(0.999) TCGA-B9-A5W8-01 3 13438880 13438880 T C NUP210 Missense_Mutation p.K138R 0.30 tolerated(0.09) benign(0.285) TCGA-B9-A5W8-01 3 167747034 167747034 T C GOLIM4 Missense_Mutation p.Q497R 0.06 deleterious(0.05) probably_damaging(0.976) TCGA-B9-A5W8-01 3 50147868 50147868 T C RBM5 Silent p.P445P 0.23 TCGA-B9-A5W8-01 4 122774226 122774226 T A BBS7 Missense_Mutation p.D245V 0.30 tolerated(0.06) benign(0.241) TCGA-B9-A5W8-01 4 40818110 40818110 T A APBB2 Nonstop_Mutation p.*760Lext*15 0.23 TCGA-B9-A5W8-01 4 48536646 48536646 A G FRYL Silent p.S2207S 0.13 TCGA-B9-A5W8-01 4 5754739 5754739 G A EVC Silent p.Q425Q 0.31 TCGA-B9-A5W8-01 4 6860177 6860177 G A KIAA0232 Silent p.E154E 0.30 TCGA-B9-A5W8-01 5 131602211 131602211 C T PDLIM4 Silent p.H100H 0.31 TCGA-B9-A5W8-01 5 131647952 131647952 A C SLC22A4 Silent p.S164S 0.30 TCGA-B9-A5W8-01 5 134785315 134785315 G C TIFAB Silent p.V105V 0.18 TCGA-B9-A5W8-01 5 145214826 145214826 G T PRELID2 5'UTR 0.08 TCGA-B9-A5W8-01 5 161116041 161116041 T C GABRA6 Silent p.N104N 0.23 TCGA-B9-A5W8-01 6 132171207 132171207 A C ENPP1 Missense_Mutation p.N131H 0.31 deleterious(0) probably_damaging(0.998) TCGA-B9-A5W8-01 6 24701750 24701750 A T ACOT13 Silent p.G110G 0.04 TCGA-B9-A5W8-01 6 27833355 27833357 AAG - HIST1H2AL In_Frame_Del p.K76del 0.26 TCGA-B9-A5W8-01 6 27858516 27858516 T G HIST1H3J Missense_Mutation p.K19Q 0.26 deleterious_low_confidence(0.01) benign(0.012) TCGA-B9-A5W8-01 6 38875811 38875811 G A DNAH8 Missense_Mutation p.R2926H 0.06 probably_damaging(0.996) TCGA-B9-A5W8-01 7 107398636 107398636 C T CBLL1 Silent p.L163L 0.21 TCGA-B9-A5W8-01 7 108212287 108212287 G A DNAJB9 Silent p.E39E 0.32 TCGA-B9-A5W8-01 7 1477990 1477990 C G MICALL2 Splice_Site p.X708_splice 0.22 TCGA-B9-A5W8-01 7 151859497 151859497 T - KMT2C Frame_Shift_Del p.K3722Rfs*23 0.25 TCGA-B9-A5W8-01 9 71509346 71509346 T C PIP5K1B Missense_Mutation p.M188T 0.24 deleterious(0) probably_damaging(0.953) TCGA-B9-A5W8-01 X 13680806 13680808 CCT - TCEANC In_Frame_Del p.S91del 0.55 TCGA-B9-A5W8-01 X 19560045 19560045 C TA SH3KBP1 Frame_Shift_Ins p.Q630Hfs*6 0.45 TCGA-B9-A5W8-01 X 70618524 70618524 G A TAF1 Silent p.K1261K 0.60 TCGA-B9-A5W9-01 10 119003520 119003520 G T SLC18A2 Nonsense_Mutation p.E54* 0.45 TCGA-B9-A5W9-01 10 71128300 71128300 G A HK1 Silent p.L172L 0.40 TCGA-B9-A5W9-01 10 99358955 99358955 C T HOGA1 Silent p.L150L 0.39 TCGA-B9-A5W9-01 11 111958619 111958619 A G SDHD Missense_Mutation p.I31V 0.46 tolerated(1) benign(0) TCGA-B9-A5W9-01 11 30352522 30352522 C T ARL14EP Silent p.V9V 0.43 TCGA-B9-A5W9-01 11 66407706 66407706 T C RBM4 Intron 0.27 TCGA-B9-A5W9-01 12 100811853 100811853 T G SLC17A8 Missense_Mutation p.I448M 0.70 deleterious(0) probably_damaging(0.999) TCGA-B9-A5W9-01 12 109702126 109702126 G A ACACB Missense_Mutation p.V2293M 0.56 deleterious(0.02) probably_damaging(0.92) TCGA-B9-A5W9-01 12 118575948 118575948 A C PEBP1 Missense_Mutation p.K80N 0.32 deleterious(0.03) benign(0.029) TCGA-B9-A5W9-01 12 121881832 121881832 G A KDM2B Silent p.L812L 0.20 TCGA-B9-A5W9-01 12 121881833 121881833 C A KDM2B Missense_Mutation p.E811D 0.20 tolerated_low_confidence(0.37) benign(0.022) TCGA-B9-A5W9-01 12 49073468 49073469 TT A KANSL2 Frame_Shift_Del p.E133Dfs*11 0.42 TCGA-B9-A5W9-01 12 49432161 49432161 A C KMT2D Missense_Mutation p.L2993R 0.28 probably_damaging(0.996) TCGA-B9-A5W9-01 12 49460045 49460045 C A RHEBL1 Missense_Mutation p.V117L 0.61 deleterious(0) benign(0.082) TCGA-B9-A5W9-01 12 56384574 56384574 A G RAB5B Missense_Mutation p.M142V 0.58 tolerated(0.24) benign(0.001) TCGA-B9-A5W9-01 14 24661497 24661519 CTGCTGAGTTAATGGCCCCATGA - TM9SF1 Frame_Shift_Del p.G339Lfs*96 0.37 TCGA-B9-A5W9-01 14 65253201 65253201 C T SPTB Missense_Mutation p.S1161N 0.37 tolerated(0.11) benign(0.001) TCGA-B9-A5W9-01 15 32930116 32930116 C T ARHGAP11A 3'UTR 0.41 TCGA-B9-A5W9-01 15 32930117 32930117 A T ARHGAP11A 3'UTR 0.41 TCGA-B9-A5W9-01 15 42166194 42166194 A C SPTBN5 Missense_Mutation p.L1580R 0.35 probably_damaging(1) TCGA-B9-A5W9-01 15 74468065 74468065 G T ISLR Missense_Mutation p.G289V 0.58 tolerated(0.1) probably_damaging(1) TCGA-B9-A5W9-01 16 11348663 11348663 T G SOCS1 3'UTR 0.61 TCGA-B9-A5W9-01 16 57713092 57713092 C T GPR97 Missense_Mutation p.P166S 0.27 tolerated(0.15) benign(0.063) TCGA-B9-A5W9-01 16 72821093 72821093 G T ZFHX3 Silent p.T3694T 0.29 TCGA-B9-A5W9-01 16 74444869 74444869 G T CLEC18B Missense_Mutation p.L350M 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-B9-A5W9-01 16 88889080 88889080 G A GALNS Silent p.V427V 0.30 TCGA-B9-A5W9-01 17 18058522 18058522 C T MYO15A Missense_Mutation p.R2775C 0.11 unknown(0) TCGA-B9-A5W9-01 17 35345926 35345926 G A AATF Missense_Mutation p.M352I 0.54 tolerated(0.44) benign(0.009) TCGA-B9-A5W9-01 17 38487464 38487464 G C RARA 5'UTR 0.44 TCGA-B9-A5W9-01 17 38487465 38487465 C T RARA 5'UTR 0.42 TCGA-B9-A5W9-01 17 55058480 55058480 A C SCPEP1 Missense_Mutation p.E38D 0.47 deleterious(0.01) probably_damaging(0.992) TCGA-B9-A5W9-01 18 19020247 19020247 G C GREB1L Missense_Mutation p.G323R 0.36 deleterious(0) probably_damaging(1) TCGA-B9-A5W9-01 18 50985743 50985743 T A DCC Silent p.S1178S 0.50 TCGA-B9-A5W9-01 19 12541862 12541862 T C ZNF443 Missense_Mutation p.D375G 0.30 tolerated(0.4) probably_damaging(0.963) TCGA-B9-A5W9-01 19 15760902 15760902 G A CYP4F3 Missense_Mutation p.R276H 0.46 tolerated(0.2) benign(0.015) TCGA-B9-A5W9-01 19 17389869 17389869 A C BABAM1 3'UTR 0.44 TCGA-B9-A5W9-01 19 18507658 18507658 C G LRRC25 Missense_Mutation p.S39T 0.41 tolerated(0.76) benign(0) TCGA-B9-A5W9-01 19 19822257 19822257 T G ZNF14 Silent p.G611G 0.44 TCGA-B9-A5W9-01 19 36243734 36243734 G - LIN37 Frame_Shift_Del 0.34 TCGA-B9-A5W9-01 1 146696657 146696657 T A FMO5 Intron 0.40 TCGA-B9-A5W9-01 1 160342319 160342319 G A NHLH1 3'UTR 0.10 TCGA-B9-A5W9-01 1 183885769 183885769 T G RGL1 Missense_Mutation p.N681K 0.45 tolerated(0.89) benign(0.028) TCGA-B9-A5W9-01 1 205308913 205308913 C T KLHDC8A Missense_Mutation p.G134R 0.67 deleterious(0) probably_damaging(1) TCGA-B9-A5W9-01 1 211748682 211748682 C T SLC30A1 3'UTR 0.07 TCGA-B9-A5W9-01 1 225546329 225546329 T C DNAH14 Silent p.T3060T 0.48 TCGA-B9-A5W9-01 1 26524220 26524220 T A CATSPER4 Missense_Mutation p.L168H 0.35 deleterious(0.04) probably_damaging(0.935) TCGA-B9-A5W9-01 1 27995854 27995854 A G IFI6 5'UTR 0.37 TCGA-B9-A5W9-01 1 40702398 40702398 G A RLF Missense_Mutation p.G675D 0.40 deleterious(0) probably_damaging(0.993) TCGA-B9-A5W9-01 1 91742587 91742587 C G HFM1 Missense_Mutation p.E1142Q 0.36 tolerated(0.29) benign(0.017) TCGA-B9-A5W9-01 1 95330398 95330398 T A SLC44A3 Silent p.S446S 0.31 TCGA-B9-A5W9-01 20 31685559 31685559 A T BPIFB4 Missense_Mutation p.K512I 0.47 deleterious(0.02) benign(0.217) TCGA-B9-A5W9-01 22 30885910 30885910 C G SEC14L4 3'UTR 0.36 TCGA-B9-A5W9-01 2 204009565 204009566 - T NBEAL1 Frame_Shift_Ins p.E1671* 0.27 TCGA-B9-A5W9-01 2 220473931 220473931 T C STK11IP Missense_Mutation p.V652A 0.38 tolerated(0.28) benign(0.009) TCGA-B9-A5W9-01 2 223168484 223168484 C A CCDC140 5'UTR 0.38 TCGA-B9-A5W9-01 2 39088916 39088916 T C DHX57 Silent p.A212A 0.56 TCGA-B9-A5W9-01 2 46608860 46608860 G A EPAS1 Missense_Mutation p.G724E 0.44 tolerated(1) benign(0.008) TCGA-B9-A5W9-01 3 124515325 124515325 A T ITGB5 Missense_Mutation p.C535S 0.37 deleterious(0) possibly_damaging(0.871) TCGA-B9-A5W9-01 3 127842581 127842581 G A RUVBL1 5'UTR 0.47 TCGA-B9-A5W9-01 3 133331389 133331389 C T TOPBP1 Silent p.L1293L 0.40 TCGA-B9-A5W9-01 3 190126252 190126252 T G CLDN16 Missense_Mutation p.L248V 0.51 tolerated(0.43) benign(0.122) TCGA-B9-A5W9-01 3 51393580 51393580 G - DOCK3 Frame_Shift_Del p.V1438Yfs*14 0.27 TCGA-B9-A5W9-01 3 63983337 63983337 C T ATXN7 Missense_Mutation p.T901I 0.39 tolerated_low_confidence(0.06) benign(0) TCGA-B9-A5W9-01 4 128813596 128813596 T C PLK4 Silent p.Y705Y 0.28 TCGA-B9-A5W9-01 4 166300624 166300624 A C CPE Missense_Mutation p.E84A 0.61 deleterious(0.04) benign(0.357) TCGA-B9-A5W9-01 5 139574037 139574037 T G CYSTM1 5'UTR 0.63 TCGA-B9-A5W9-01 5 175816407 175816407 T A HIGD2A Missense_Mutation p.L77H 0.26 deleterious(0.02) probably_damaging(0.975) TCGA-B9-A5W9-01 5 176300996 176300996 T G UNC5A Missense_Mutation p.L305R 0.59 deleterious(0) possibly_damaging(0.894) TCGA-B9-A5W9-01 6 118790282 118790282 C T CEP85L Missense_Mutation p.R739H 0.20 deleterious(0) probably_damaging(0.992) TCGA-B9-A5W9-01 6 138656258 138656258 G A KIAA1244 Missense_Mutation p.R2092K 0.39 tolerated_low_confidence(0.24) probably_damaging(0.989) TCGA-B9-A5W9-01 6 4130664 4130664 T G ECI2 Missense_Mutation p.D148A 0.28 deleterious(0.01) benign(0.437) TCGA-B9-A5W9-01 6 47254097 47254097 G A TNFRSF21 Nonsense_Mutation p.Q111* 0.44 TCGA-B9-A5W9-01 7 36446013 36446013 A C ANLN Missense_Mutation p.K237N 0.55 deleterious(0) possibly_damaging(0.691) TCGA-B9-A5W9-01 7 90043720 90043720 A G CLDN12 3'UTR 0.56 TCGA-B9-A5W9-01 X 118219440 118219440 T G KIAA1210 Missense_Mutation p.K1585T 0.12 deleterious(0.01) possibly_damaging(0.752) TCGA-B9-A69E-01 10 104103846 104103846 T G GBF1 Missense_Mutation p.F68V 0.23 deleterious(0) probably_damaging(0.999) TCGA-B9-A69E-01 10 14372162 14372162 C T FRMD4A 5'UTR 0.16 TCGA-B9-A69E-01 10 21970293 21970293 T A MLLT10 Missense_Mutation p.C552S 0.29 tolerated(0.38) benign(0.001) TCGA-B9-A69E-01 10 25288439 25288439 G T ENKUR Missense_Mutation p.D38E 0.20 tolerated(1) benign(0.004) TCGA-B9-A69E-01 10 71136714 71136714 G T HK1 Missense_Mutation p.M304I 0.23 deleterious(0.01) benign(0.287) TCGA-B9-A69E-01 11 104901192 104901192 A C CASP1 Silent p.L164L 0.24 TCGA-B9-A69E-01 11 123894195 123894195 C T OR10G9 Missense_Mutation p.T159I 0.27 deleterious(0.01) probably_damaging(0.956) TCGA-B9-A69E-01 11 17099463 17099463 A G RPS13 5'Flank 0.30 TCGA-B9-A69E-01 11 4567069 4567069 A T OR52M1 Missense_Mutation p.I217F 0.22 deleterious(0) probably_damaging(0.939) TCGA-B9-A69E-01 11 46895104 46895104 C G LRP4 Missense_Mutation p.G1424R 0.28 tolerated(0.26) benign(0.271) TCGA-B9-A69E-01 11 55135807 55135807 C T OR4A15 Nonsense_Mutation p.R150* 0.30 TCGA-B9-A69E-01 11 61213668 61213668 C A SDHAF2 3'UTR 0.23 TCGA-B9-A69E-01 11 8132577 8132577 C T RIC3 Missense_Mutation p.E260K 0.21 deleterious(0.01) possibly_damaging(0.615) TCGA-B9-A69E-01 12 100733074 100733074 A C SCYL2 3'UTR 0.31 TCGA-B9-A69E-01 12 118651868 118651868 A T TAOK3 Missense_Mutation p.Y231N 0.20 deleterious(0) probably_damaging(0.996) TCGA-B9-A69E-01 12 121175942 121175942 C T ACADS Intron 0.26 TCGA-B9-A69E-01 12 69666802 69666802 T C CPSF6 3'UTR 0.36 TCGA-B9-A69E-01 12 81471841 81471841 C T ACSS3 5'UTR 0.29 TCGA-B9-A69E-01 13 52509756 52509756 A G ATP7B Missense_Mutation p.V1366A 0.26 deleterious(0) possibly_damaging(0.694) TCGA-B9-A69E-01 14 31081505 31081505 G A G2E3 Silent p.T531T 0.22 TCGA-B9-A69E-01 14 45645152 45645152 C G FANCM Missense_Mutation p.C1065W 0.26 deleterious(0.02) possibly_damaging(0.619) TCGA-B9-A69E-01 14 55642723 55642723 C A DLGAP5 Missense_Mutation p.A355S 0.13 tolerated(0.45) benign(0.068) TCGA-B9-A69E-01 14 64937441 64937441 T G AKAP5 3'UTR 0.24 TCGA-B9-A69E-01 15 29346718 29346718 C T APBA2 Missense_Mutation p.R211C 0.06 deleterious_low_confidence(0.01) benign(0.003) TCGA-B9-A69E-01 15 51285700 51285700 G T AP4E1 Missense_Mutation p.D742Y 0.13 deleterious(0) possibly_damaging(0.594) TCGA-B9-A69E-01 15 72499107 72499107 C T PKM Missense_Mutation p.G368R 0.12 deleterious(0) probably_damaging(1) TCGA-B9-A69E-01 15 73614819 73614819 A T HCN4 3'UTR 0.21 TCGA-B9-A69E-01 15 90321562 90321562 C T MESP2 Silent p.Y397Y 0.23 TCGA-B9-A69E-01 16 19474632 19474632 G T TMC5 Missense_Mutation p.Q393H 0.25 tolerated(0.06) benign(0.006) TCGA-B9-A69E-01 16 27549611 27549611 C T GTF3C1 Silent p.E166E 0.28 TCGA-B9-A69E-01 16 3078701 3078701 T A CCDC64B Missense_Mutation p.K413M 0.21 deleterious(0) probably_damaging(0.971) TCGA-B9-A69E-01 16 3367508 3367508 T C ZNF75A Missense_Mutation p.I177T 0.25 tolerated(0.05) benign(0.158) TCGA-B9-A69E-01 16 68853183 68853183 A C CDH1 Silent p.T522T 0.25 TCGA-B9-A69E-01 16 89650107 89650107 T A CPNE7 Silent p.I195I 0.27 TCGA-B9-A69E-01 17 17925092 17925092 G A ATPAF2 Missense_Mutation p.H195Y 0.29 tolerated(0.13) benign(0.074) TCGA-B9-A69E-01 17 21322042 21322042 C T KCNJ12 3'UTR 0.27 TCGA-B9-A69E-01 17 26675218 26675218 A - POLDIP2 Frame_Shift_Del p.F343Lfs*76 0.18 TCGA-B9-A69E-01 17 35974304 35974304 A C DDX52 3'UTR 0.23 TCGA-B9-A69E-01 17 41019876 41019876 T G AOC4P RNA 0.27 TCGA-B9-A69E-01 17 7157996 7157996 T C ELP5 Missense_Mutation p.C111R 0.27 tolerated(0.32) possibly_damaging(0.793) TCGA-B9-A69E-01 18 2610806 2610806 A - NDC80 Frame_Shift_Del p.N580Ifs*7 0.16 TCGA-B9-A69E-01 18 46798650 46798650 C G DYM Silent p.L383L 0.29 TCGA-B9-A69E-01 19 1082889 1082889 G T HMHA1 Silent p.L872L 0.37 TCGA-B9-A69E-01 19 11918315 11918315 G A ZNF491 3'UTR 0.24 TCGA-B9-A69E-01 19 13883025 13883025 A T MRI1 Missense_Mutation p.E347V 0.23 tolerated(0.18) benign(0.042) TCGA-B9-A69E-01 19 14211641 14211641 A G PRKACA Missense_Mutation p.F139S 0.32 deleterious(0) probably_damaging(0.998) TCGA-B9-A69E-01 19 17366410 17366410 G A USHBP1 Silent p.A492A 0.18 TCGA-B9-A69E-01 19 22362603 22362603 C T ZNF676 3'UTR 0.27 TCGA-B9-A69E-01 19 33464971 33464972 - A C19orf40 Frame_Shift_Ins p.N84Kfs*3 0.21 TCGA-B9-A69E-01 19 45281521 45281521 C G CBLC Missense_Mutation p.F111L 0.25 tolerated(0.1) benign(0.054) TCGA-B9-A69E-01 19 52376955 52376955 A G ZNF577 Silent p.F96F 0.22 TCGA-B9-A69E-01 19 5653148 5653148 C T SAFB Missense_Mutation p.T439I 0.31 deleterious(0) probably_damaging(1) TCGA-B9-A69E-01 19 58489700 58489700 T C ZNF606 Missense_Mutation p.Q783R 0.26 tolerated(0.06) benign(0.002) TCGA-B9-A69E-01 1 103573828 103573828 G C COL11A1 5'UTR 0.34 TCGA-B9-A69E-01 1 158639217 158639217 G - SPTA1 Frame_Shift_Del p.A605Efs*12 0.17 TCGA-B9-A69E-01 1 202850297 202850297 C T RABIF Missense_Mutation p.D61N 0.36 deleterious(0.02) benign(0.192) TCGA-B9-A69E-01 1 214826247 214826247 T C CENPF Missense_Mutation p.I2746T 0.21 benign(0.018) TCGA-B9-A69E-01 1 21889674 21889674 C A ALPL Silent p.A123A 0.40 TCGA-B9-A69E-01 1 228511117 228511117 G A OBSCN Missense_Mutation p.M6111I 0.21 benign(0.012) TCGA-B9-A69E-01 1 27333078 27333078 A T FAM46B Missense_Mutation p.F212Y 0.28 deleterious(0.02) probably_damaging(0.991) TCGA-B9-A69E-01 1 34643683 34643683 G C C1orf94 Missense_Mutation p.R98T 0.32 tolerated(0.13) benign(0.007) TCGA-B9-A69E-01 1 52897102 52897102 G T ZCCHC11 Missense_Mutation p.Q1432K 0.31 deleterious(0.03) probably_damaging(0.989) TCGA-B9-A69E-01 1 87570377 87570377 T C HS2ST1 Nonstop_Mutation p.*357Rext*2 0.32 TCGA-B9-A69E-01 20 1902142 1902142 A G SIRPA Missense_Mutation p.I180V 0.30 tolerated(0.13) probably_damaging(0.986) TCGA-B9-A69E-01 20 31627181 31627181 C A BPIFB6 Missense_Mutation p.P310H 0.39 deleterious(0.02) probably_damaging(0.981) TCGA-B9-A69E-01 20 43108944 43108944 A G TTPAL Missense_Mutation p.Y102C 0.31 deleterious(0) possibly_damaging(0.729) TCGA-B9-A69E-01 20 43251682 43251682 G A ADA Missense_Mutation p.A215V 0.21 deleterious(0) probably_damaging(0.994) TCGA-B9-A69E-01 21 35743124 35743124 C T KCNE2 Missense_Mutation p.A116V 0.27 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-B9-A69E-01 21 39671646 39671649 TTGA - KCNJ15 Frame_Shift_Del p.I156Rfs*40 0.29 TCGA-B9-A69E-01 22 31524142 31524143 CC - INPP5J Intron 0.26 TCGA-B9-A69E-01 22 39387407 39387407 T G APOBEC3B Missense_Mutation p.L265W 0.35 tolerated(0.05) benign(0.003) TCGA-B9-A69E-01 2 175614800 175614800 G A CHRNA1 Silent p.P317P 0.16 TCGA-B9-A69E-01 2 44116985 44116985 G A LRPPRC Missense_Mutation p.A1339V 0.22 tolerated(0.06) benign(0.077) TCGA-B9-A69E-01 2 44116986 44116986 C G LRPPRC Missense_Mutation p.A1339P 0.23 deleterious(0) possibly_damaging(0.882) TCGA-B9-A69E-01 2 73868823 73868823 C A NAT8 5'UTR 0.31 TCGA-B9-A69E-01 3 131190046 131190046 G T MRPL3 Missense_Mutation p.T236N 0.16 deleterious(0) probably_damaging(0.996) TCGA-B9-A69E-01 3 13359089 13359089 G A NUP210 3'UTR 0.62 TCGA-B9-A69E-01 3 134078995 134078995 A C AMOTL2 Missense_Mutation p.N612K 0.31 tolerated(0.17) probably_damaging(0.915) TCGA-B9-A69E-01 3 135720283 135720283 T G PPP2R3A 5'UTR 0.20 TCGA-B9-A69E-01 3 140675502 140675502 G A SLC25A36 Missense_Mutation p.V59I 0.36 tolerated(0.5) benign(0.015) TCGA-B9-A69E-01 3 151107816 151107816 T G MED12L Missense_Mutation p.I1799S 0.40 tolerated(0.07) benign(0.024) TCGA-B9-A69E-01 3 195516343 195516343 C A MUC4 Missense_Mutation p.G703V 0.19 unknown(0) TCGA-B9-A69E-01 3 77671536 77671536 A T ROBO2 Missense_Mutation p.D1254V 0.38 deleterious(0) benign(0.001) TCGA-B9-A69E-01 4 119952865 119952865 T A SYNPO2 Missense_Mutation p.F979I 0.19 deleterious(0) probably_damaging(0.996) TCGA-B9-A69E-01 4 128694780 128694780 A G SLC25A31 3'UTR 0.21 TCGA-B9-A69E-01 4 129131283 129131283 G T LARP1B 3'UTR 0.25 TCGA-B9-A69E-01 4 17635486 17635486 C A FAM184B Missense_Mutation p.S972I 0.23 deleterious(0) probably_damaging(0.982) TCGA-B9-A69E-01 4 183245385 183245385 C A TENM3 Missense_Mutation p.A71E 0.11 tolerated_low_confidence(0.27) possibly_damaging(0.849) TCGA-B9-A69E-01 4 187517964 187517964 C G FAT1 Missense_Mutation p.D4244H 0.26 probably_damaging(0.999) TCGA-B9-A69E-01 4 3478120 3478121 - GGCTA DOK7 Frame_Shift_Ins p.T130Rfs*118 0.26 TCGA-B9-A69E-01 4 38776735 38776735 G T TLR10 Missense_Mutation p.F159L 0.19 tolerated(1) benign(0.022) TCGA-B9-A69E-01 4 71347168 71347168 C T MUC7 Missense_Mutation p.A236V 0.25 tolerated(0.09) unknown(0) TCGA-B9-A69E-01 5 140530875 140530875 C T PCDHB6 Missense_Mutation p.T346I 0.05 tolerated(0.19) benign(0.006) TCGA-B9-A69E-01 5 140532834 140532834 T A PCDHB6 3'UTR 0.07 TCGA-B9-A69E-01 5 149921206 149921206 C T NDST1 Silent p.L608L 0.31 TCGA-B9-A69E-01 5 21752166 21752166 T C CDH12 Missense_Mutation p.I689V 0.27 tolerated(0.5) benign(0.007) TCGA-B9-A69E-01 5 55212822 55212822 T C IL31RA Silent p.G723G 0.28 TCGA-B9-A69E-01 5 61662304 61662304 A T KIF2A Missense_Mutation p.N548Y 0.21 deleterious(0) probably_damaging(0.959) TCGA-B9-A69E-01 5 6663046 6663047 - T SRD5A1 Frame_Shift_Ins p.L229Ffs*4 0.19 TCGA-B9-A69E-01 5 908120 908120 C T TRIP13 Silent p.T230T 0.30 TCGA-B9-A69E-01 6 109977966 109977966 G - AK9 Frame_Shift_Del p.T251Ifs*2 0.21 TCGA-B9-A69E-01 6 159655428 159655428 T G FNDC1 Missense_Mutation p.M1295R 0.33 deleterious_low_confidence(0) unknown(0) TCGA-B9-A69E-01 6 56504731 56504731 C T DST Missense_Mutation p.S335N 0.37 probably_damaging(0.994) TCGA-B9-A69E-01 6 72960096 72960096 C G RIMS1 Missense_Mutation p.L769V 0.14 deleterious(0) probably_damaging(0.995) TCGA-B9-A69E-01 6 90276604 90276605 TT - ANKRD6 5'UTR 0.20 TCGA-B9-A69E-01 7 100466248 100466248 C T TRIP6 Silent p.G165G 0.33 TCGA-B9-A69E-01 7 112724144 112724146 ATC - GPR85 In_Frame_Del p.D211del 0.15 TCGA-B9-A69E-01 7 11500346 11500346 C T THSD7A Missense_Mutation p.V850M 0.13 deleterious(0) benign(0.063) TCGA-B9-A69E-01 7 127958110 127958111 - GAC RBM28 In_Frame_Ins p.G537_Q538insR 0.24 TCGA-B9-A69E-01 8 124796777 124796777 G C FAM91A1 Missense_Mutation p.K257N 0.20 deleterious(0) possibly_damaging(0.868) TCGA-B9-A69E-01 8 15998431 15998431 T C MSR1 Intron 0.34 TCGA-B9-A69E-01 8 38027436 38027436 C - LSM1 Splice_Site p.X39_splice 0.19 TCGA-B9-A69E-01 8 40011041 40011041 T A C8orf4 5'UTR 0.37 TCGA-B9-A69E-01 8 94805453 94805453 G C TMEM67 Missense_Mutation p.A535P 0.27 deleterious(0.01) probably_damaging(0.921) TCGA-B9-A69E-01 9 114412019 114412019 A G DNAJC25 Missense_Mutation p.Y259C 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-B9-A69E-01 9 132501744 132501744 G C PTGES 3'UTR 0.29 TCGA-B9-A69E-01 9 132501746 132501746 G T PTGES 3'UTR 0.29 TCGA-B9-A69E-01 X 118977251 118977251 T C UPF3B Silent p.R161R 0.54 TCGA-B9-A69E-01 X 135582848 135582848 T C HTATSF1 Silent p.D147D 0.06 TCGA-B9-A69E-01 X 153490483 153490483 T A OPN1MW2 Silent p.L73L 0.76 TCGA-B9-A69E-01 X 41043810 41043810 C T USP9X Missense_Mutation p.A1147V 0.50 tolerated(0.19) probably_damaging(0.97) TCGA-B9-A8YH-01 10 100167377 100167377 G T PYROXD2 Missense_Mutation p.L93M 0.35 deleterious(0) probably_damaging(0.968) TCGA-B9-A8YH-01 10 103922184 103922184 T C NOLC1 3'UTR 0.30 TCGA-B9-A8YH-01 10 112837876 112837876 C A ADRA2A Missense_Mutation p.T41N 0.33 tolerated(0.48) benign(0.055) TCGA-B9-A8YH-01 10 63852419 63852419 C T ARID5B Missense_Mutation p.S1066L 0.40 tolerated(1) benign(0.004) TCGA-B9-A8YH-01 10 88197365 88197365 A G WAPAL Missense_Mutation p.C1170R 0.43 deleterious(0.03) benign(0.003) TCGA-B9-A8YH-01 10 89419610 89419610 T C PAPSS2 5'UTR 0.40 TCGA-B9-A8YH-01 10 93851649 93851649 G A CPEB3 Missense_Mutation p.S542F 0.45 deleterious(0) possibly_damaging(0.588) TCGA-B9-A8YH-01 10 95720327 95720327 A G PIPSL RNA 0.39 TCGA-B9-A8YH-01 11 112042835 112042835 T C TEX12 3'UTR 0.33 TCGA-B9-A8YH-01 11 123847533 123847533 A T OR10S1 Missense_Mutation p.F289Y 0.42 deleterious(0) probably_damaging(0.923) TCGA-B9-A8YH-01 11 125864286 125864286 T C CDON Splice_Site p.X849_splice 0.48 TCGA-B9-A8YH-01 11 14532443 14532443 G A PSMA1 Missense_Mutation p.P206L 0.40 deleterious(0.01) probably_damaging(0.971) TCGA-B9-A8YH-01 11 46701795 46701795 G A ARHGAP1 Silent p.N286N 0.34 TCGA-B9-A8YH-01 11 46772905 46772905 T C CKAP5 Silent p.K1771K 0.05 TCGA-B9-A8YH-01 11 47372130 47372130 G A MYBPC3 Missense_Mutation p.P110L 0.15 deleterious(0.03) benign(0.001) TCGA-B9-A8YH-01 11 47374216 47374226 CAGGCACGAAG - MYBPC3 5'UTR 0.22 TCGA-B9-A8YH-01 11 47494737 47494737 A C CELF1 Missense_Mutation p.F438L 0.49 deleterious(0) possibly_damaging(0.896) TCGA-B9-A8YH-01 11 554230 554230 C T LRRC56 Missense_Mutation p.P528L 0.27 tolerated_low_confidence(0.12) possibly_damaging(0.908) TCGA-B9-A8YH-01 12 128899711 128899711 G A TMEM132C Missense_Mutation p.A174T 0.65 deleterious(0) probably_damaging(0.996) TCGA-B9-A8YH-01 12 29639178 29639178 C A OVCH1 Splice_Site p.X332_splice 0.57 TCGA-B9-A8YH-01 12 30834737 30834737 A G IPO8 Missense_Mutation p.M113T 0.33 tolerated(0.44) benign(0.001) TCGA-B9-A8YH-01 12 57619121 57619121 C A NXPH4 Missense_Mutation p.P173H 0.54 tolerated(0.12) possibly_damaging(0.541) TCGA-B9-A8YH-01 12 9875396 9875396 A C CLECL1 Missense_Mutation p.F110L 0.61 tolerated(0.69) benign(0.35) TCGA-B9-A8YH-01 12 988861 988861 T C WNK1 Silent p.P832P 0.58 TCGA-B9-A8YH-01 13 21265426 21265429 TAAG - IFT88 3'UTR 0.44 TCGA-B9-A8YH-01 13 84453695 84453695 T G SLITRK1 Missense_Mutation p.K650Q 0.33 tolerated(1) benign(0.024) TCGA-B9-A8YH-01 14 35002688 35002688 A G EAPP Missense_Mutation p.I105T 0.45 deleterious(0) benign(0.394) TCGA-B9-A8YH-01 14 53224474 53224474 G C STYX Silent p.V118V 0.30 TCGA-B9-A8YH-01 14 94956103 94956103 C G SERPINA12 Missense_Mutation p.V303L 0.42 tolerated(0.28) benign(0.409) TCGA-B9-A8YH-01 15 101438391 101438391 G C ALDH1A3 Splice_Site p.X295_splice 0.43 TCGA-B9-A8YH-01 15 42704110 42704110 C A CAPN3 3'UTR 0.52 TCGA-B9-A8YH-01 15 59911624 59911624 G A GCNT3 Missense_Mutation p.G396E 0.38 deleterious(0) probably_damaging(1) TCGA-B9-A8YH-01 15 77363411 77363411 C T TSPAN3 5'UTR 0.44 TCGA-B9-A8YH-01 16 2498939 2498939 T A CCNF Missense_Mutation p.M393K 0.40 deleterious(0) possibly_damaging(0.905) TCGA-B9-A8YH-01 16 28495396 28495396 C A CLN3 Missense_Mutation p.G241W 0.53 tolerated(0.06) probably_damaging(0.923) TCGA-B9-A8YH-01 17 18286356 18286356 C T EVPLL Missense_Mutation p.R177W 0.23 deleterious(0.03) benign(0) TCGA-B9-A8YH-01 17 27580671 27580672 - T CRYBA1 Frame_Shift_Ins p.K125* 0.36 TCGA-B9-A8YH-01 17 33679953 33679953 A G SLFN11 Silent p.L710L 0.32 TCGA-B9-A8YH-01 17 3539502 3539525 CCGCGCAGCCATTATCTCCCTGAC - SHPK Missense_Mutation 0.08 TCGA-B9-A8YH-01 17 35896194 35896194 C G SYNRG Missense_Mutation p.E1185Q 0.34 deleterious(0) probably_damaging(0.997) TCGA-B9-A8YH-01 17 38634839 38634839 G A TNS4 Nonsense_Mutation p.Q658* 0.39 TCGA-B9-A8YH-01 17 42978381 42978381 C T CCDC103 Silent p.D5D 0.26 TCGA-B9-A8YH-01 17 48545565 48545565 T C CHAD Missense_Mutation p.R204G 0.24 tolerated(0.55) benign(0.003) TCGA-B9-A8YH-01 17 5389469 5389469 T C DERL2 Missense_Mutation p.S5G 0.24 tolerated(0.56) benign(0.001) TCGA-B9-A8YH-01 17 78178935 78178935 C A CARD14 Missense_Mutation p.P834T 0.33 deleterious(0) probably_damaging(0.999) TCGA-B9-A8YH-01 18 11853914 11853914 C T CHMP1B 3'UTR 0.25 TCGA-B9-A8YH-01 18 13105009 13105009 T C CEP192 Silent p.F2326F 0.38 TCGA-B9-A8YH-01 18 29622139 29622139 T A RNF125 Intron 0.36 TCGA-B9-A8YH-01 18 43481032 43481032 A C EPG5 Silent p.A1525A 0.33 TCGA-B9-A8YH-01 19 10742023 10742023 T G SLC44A2 Missense_Mutation p.Y135D 0.39 tolerated(0.07) benign(0.004) TCGA-B9-A8YH-01 19 35085225 35085226 AC - SCGB2B2 Frame_Shift_Del p.V34Cfs*3 0.26 TCGA-B9-A8YH-01 19 40330883 40330883 A C FBL Missense_Mutation p.V123G 0.12 deleterious(0) probably_damaging(0.92) TCGA-B9-A8YH-01 19 46387877 46387878 - G IRF2BP1 Frame_Shift_Ins p.E386Rfs*30 0.22 TCGA-B9-A8YH-01 19 48281875 48281875 C A SEPW1 5'UTR 0.53 TCGA-B9-A8YH-01 1 112029234 112029234 T A ADORA3 Missense_Mutation p.K282N 0.46 deleterious_low_confidence(0) benign(0.196) TCGA-B9-A8YH-01 1 144882724 144882724 G T PDE4DIP Missense_Mutation p.Q1099K 0.21 tolerated(0.42) benign(0.373) TCGA-B9-A8YH-01 1 150599578 150599578 A G ENSA Intron 0.22 TCGA-B9-A8YH-01 1 151867562 151867562 C G THEM4 Missense_Mutation p.D70H 0.36 deleterious(0) possibly_damaging(0.838) TCGA-B9-A8YH-01 1 153964111 153964111 T A RPS27 Missense_Mutation p.V62D 0.43 deleterious(0.01) benign(0.247) TCGA-B9-A8YH-01 1 155034762 155034762 G A ADAM15 Silent p.L822L 0.44 TCGA-B9-A8YH-01 1 167343431 167343431 C G POU2F1 Missense_Mutation p.H163Q 0.39 tolerated(0.13) unknown(0) TCGA-B9-A8YH-01 1 17942531 17942531 T G ARHGEF10L Intron 0.39 TCGA-B9-A8YH-01 1 186277770 186277770 T C PRG4 Silent p.I973I 0.41 TCGA-B9-A8YH-01 1 19526229 19526229 C G UBR4 Missense_Mutation p.Q98H 0.31 benign(0.243) TCGA-B9-A8YH-01 1 197026477 197026477 G T F13B Silent p.I308I 0.43 TCGA-B9-A8YH-01 1 201292313 201292313 G A PKP1 Missense_Mutation p.G580E 0.38 deleterious(0) probably_damaging(1) TCGA-B9-A8YH-01 1 211836794 211836794 T - NEK2 Frame_Shift_Del p.S438Afs*21 0.29 TCGA-B9-A8YH-01 1 246670463 246670463 G T SMYD3 Silent p.R19R 0.41 TCGA-B9-A8YH-01 1 46120388 46120388 C T GPBP1L1 Missense_Mutation p.G102S 0.37 tolerated(0.07) probably_damaging(0.998) TCGA-B9-A8YH-01 1 46685971 46685971 G A LURAP1 3'UTR 0.26 TCGA-B9-A8YH-01 1 5965397 5965397 C G NPHP4 Missense_Mutation p.C637S 0.36 tolerated(0.4) benign(0.098) TCGA-B9-A8YH-01 1 71513083 71513083 G T PTGER3 Missense_Mutation p.L60I 0.34 tolerated(1) benign(0.002) TCGA-B9-A8YH-01 1 71513084 71513084 C A PTGER3 Silent p.L59L 0.34 TCGA-B9-A8YH-01 20 21321426 21321426 C G XRN2 Missense_Mutation p.P449R 0.30 tolerated(0.06) benign(0.028) TCGA-B9-A8YH-01 20 2635804 2635810 AGGCCCT - NOP56 Intron 0.27 TCGA-B9-A8YH-01 20 42088517 42088517 C T SRSF6 Silent p.C121C 0.29 TCGA-B9-A8YH-01 20 54579177 54579177 G A CBLN4 Silent p.V17V 0.25 TCGA-B9-A8YH-01 20 54972276 54972276 T G CSTF1 Missense_Mutation p.D61E 0.50 tolerated(1) benign(0.002) TCGA-B9-A8YH-01 20 62322275 62322275 G A RTEL1 Missense_Mutation p.R868Q 0.36 tolerated(0.61) benign(0.001) TCGA-B9-A8YH-01 21 18938157 18938157 A G CXADR 3'UTR 0.52 TCGA-B9-A8YH-01 21 46285323 46285323 A G PTTG1IP Missense_Mutation p.L52P 0.36 deleterious(0) probably_damaging(0.999) TCGA-B9-A8YH-01 22 18369959 18369959 T C MICAL3 Missense_Mutation p.R682G 0.37 benign(0.014) TCGA-B9-A8YH-01 22 24036113 24036113 G C RGL4 Missense_Mutation p.R288S 0.28 tolerated(0.06) benign(0.003) TCGA-B9-A8YH-01 22 29182126 29182126 C G CCDC117 Missense_Mutation p.L218V 0.43 deleterious(0.01) possibly_damaging(0.801) TCGA-B9-A8YH-01 22 31740781 31740781 G T PATZ1 Missense_Mutation p.P270T 0.45 deleterious(0) benign(0.012) TCGA-B9-A8YH-01 22 37471189 37471189 T C TMPRSS6 Missense_Mutation p.Y452C 0.43 deleterious(0) probably_damaging(0.954) TCGA-B9-A8YH-01 22 38201472 38201472 C G H1F0 5'UTR 0.51 TCGA-B9-A8YH-01 22 41572322 41572322 T C EP300 Silent p.P1617P 0.36 TCGA-B9-A8YH-01 22 50899027 50899027 A G SBF1 Silent p.L1028L 0.35 TCGA-B9-A8YH-01 2 170097724 170097724 T C LRP2 Silent p.S1273S 0.32 TCGA-B9-A8YH-01 2 179424376 179424376 T C TTN Missense_Mutation p.Q28828R 0.34 TCGA-B9-A8YH-01 2 207655298 207655298 T C FASTKD2 Missense_Mutation p.V634A 0.39 deleterious(0.03) benign(0.055) TCGA-B9-A8YH-01 2 241621833 241621833 T A AQP12B Missense_Mutation p.H141L 0.26 deleterious(0) possibly_damaging(0.897) TCGA-B9-A8YH-01 2 242683053 242683053 G T D2HGDH Missense_Mutation p.Q169H 0.33 deleterious(0) probably_damaging(0.964) TCGA-B9-A8YH-01 2 28974788 28974788 T A PPP1CB 5'UTR 0.33 TCGA-B9-A8YH-01 3 121410064 121410064 T A GOLGB1 Missense_Mutation p.D2716V 0.12 probably_damaging(0.982) TCGA-B9-A8YH-01 3 142840256 142840258 GTA AT CHST2 Frame_Shift_Del p.V200Ifs*21 0.38 TCGA-B9-A8YH-01 3 142841351 142841351 A - CHST2 3'UTR 0.21 TCGA-B9-A8YH-01 3 38592252 38592252 G A SCN5A Silent p.L1871L 0.33 TCGA-B9-A8YH-01 3 56649243 56649243 A G CCDC66 Missense_Mutation p.I552V 0.53 deleterious(0) probably_damaging(0.985) TCGA-B9-A8YH-01 4 139965852 139965871 GAAAGGAAATGTCTCATCCT - CCRN4L Frame_Shift_Del p.E174Gfs*9 0.29 TCGA-B9-A8YH-01 4 151520233 151520233 C T LRBA Missense_Mutation p.R1991H 0.44 deleterious(0) probably_damaging(0.999) TCGA-B9-A8YH-01 4 99363256 99363257 TG - RAP1GDS1 Frame_Shift_Del p.V606Gfs*15 0.17 TCGA-B9-A8YH-01 5 1087036 1087036 C - SLC12A7 Frame_Shift_Del p.T220Pfs*6 0.26 TCGA-B9-A8YH-01 5 141313856 141313856 T C KIAA0141 Missense_Mutation p.Y317H 0.43 deleterious(0) probably_damaging(1) TCGA-B9-A8YH-01 5 74009349 74009349 C A HEXB Missense_Mutation p.H264N 0.42 deleterious(0) possibly_damaging(0.894) TCGA-B9-A8YH-01 5 96329525 96329525 G T LNPEP Missense_Mutation p.L419F 0.44 deleterious(0) probably_damaging(1) TCGA-B9-A8YH-01 6 134350058 134350058 G A SLC2A12 Missense_Mutation p.S302L 0.47 deleterious(0) probably_damaging(1) TCGA-B9-A8YH-01 6 134495179 134495179 C A SGK1 Missense_Mutation p.Q159H 0.38 deleterious(0.02) benign(0.049) TCGA-B9-A8YH-01 6 137243570 137243570 C T SLC35D3 Missense_Mutation p.R2W 0.45 deleterious_low_confidence(0) benign(0.353) TCGA-B9-A8YH-01 6 30638231 30638231 C G DHX16 Missense_Mutation p.A208P 0.24 deleterious(0.03) unknown(0) TCGA-B9-A8YH-01 6 41046900 41046900 G T NFYA Missense_Mutation p.Q24H 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-B9-A8YH-01 6 64395141 64395141 G A PHF3 Silent p.P506P 0.39 TCGA-B9-A8YH-01 6 72011551 72011551 C T OGFRL1 Silent p.S385S 0.40 TCGA-B9-A8YH-01 6 76621412 76621412 T G MYO6 Missense_Mutation p.S1146A 0.42 tolerated(0.73) benign(0.12) TCGA-B9-A8YH-01 7 100238449 100238449 G A TFR2 Silent p.C111C 0.47 TCGA-B9-A8YH-01 7 121755193 121755193 C G AASS Missense_Mutation p.Q326H 0.42 deleterious(0.01) possibly_damaging(0.797) TCGA-B9-A8YH-01 7 149462502 149462502 G A ZNF467 Silent p.S363S 0.47 TCGA-B9-A8YH-01 7 42959145 42959145 C T PSMA2 Intron 0.49 TCGA-B9-A8YH-01 7 70239070 70239070 C T AUTS2 Silent p.L629L 0.43 TCGA-B9-A8YH-01 7 94298424 94298425 - T PEG10 3'UTR 0.31 TCGA-B9-A8YH-01 8 11412365 11412365 C T BLK Missense_Mutation p.P196S 0.50 tolerated(0.71) benign(0.068) TCGA-B9-A8YH-01 8 120831745 120831745 C - TAF2 Frame_Shift_Del p.G47Dfs*5 0.29 TCGA-B9-A8YH-01 8 144689268 144689268 T G PYCRL Missense_Mutation p.E76A 0.41 tolerated(0.08) possibly_damaging(0.805) TCGA-B9-A8YH-01 8 4494878 4494878 C - CSMD1 Frame_Shift_Del p.N97Ifs*2 0.25 TCGA-B9-A8YH-01 8 62556523 62556523 C A ASPH Missense_Mutation p.M230I 0.47 tolerated_low_confidence(0.48) benign(0.004) TCGA-B9-A8YH-01 9 135505682 135505682 A G DDX31 Missense_Mutation p.Y639H 0.47 deleterious(0) probably_damaging(0.993) TCGA-B9-A8YH-01 9 35396502 35396502 G A UNC13B Missense_Mutation p.A1031T 0.48 tolerated(0.45) possibly_damaging(0.67) TCGA-B9-A8YH-01 9 98684631 98684631 C T ERCC6L2 Silent p.Y459Y 0.34 TCGA-B9-A8YH-01 X 100375404 100375404 G C CENPI Missense_Mutation p.C202S 0.73 deleterious(0.03) possibly_damaging(0.796) TCGA-B9-A8YH-01 X 153695615 153695615 C - PLXNA3 Frame_Shift_Del p.G1083Afs*64 0.37 TCGA-B9-A8YH-01 X 2867593 2867593 T - ARSE Frame_Shift_Del p.V203Sfs*10 0.41 TCGA-B9-A8YH-01 X 38186788 38186788 C A RPGR 5'UTR 0.76 TCGA-B9-A8YH-01 X 50378467 50378467 A G SHROOM4 Silent p.C202C 0.82 TCGA-B9-A8YI-01 10 104158212 104158212 A G NFKB2 Missense_Mutation p.Q308R 0.38 deleterious(0.01) benign(0.242) TCGA-B9-A8YI-01 10 129909928 129909928 G A MKI67 Silent p.D747D 0.29 TCGA-B9-A8YI-01 10 129909929 129909929 T A MKI67 Missense_Mutation p.D747V 0.28 deleterious(0) probably_damaging(0.999) TCGA-B9-A8YI-01 10 26505778 26505778 G T GAD2 Nonsense_Mutation p.E14* 0.38 TCGA-B9-A8YI-01 10 28908467 28908468 - TACT WAC Frame_Shift_Ins p.F628Tfs*8 0.26 TCGA-B9-A8YI-01 10 33496597 33496597 A G NRP1 Silent p.F554F 0.09 TCGA-B9-A8YI-01 10 60549020 60549020 A G BICC1 Splice_Site p.X201_splice 0.42 TCGA-B9-A8YI-01 10 99330070 99330070 C A UBTD1 Silent p.G158G 0.34 TCGA-B9-A8YI-01 11 1020248 1020248 G T MUC6 Missense_Mutation p.P1217H 0.33 unknown(0) TCGA-B9-A8YI-01 11 10328163 10328163 G A ADM Missense_Mutation p.S178N 0.32 deleterious_low_confidence(0.05) unknown(0) TCGA-B9-A8YI-01 11 113683009 113683009 T A USP28 Missense_Mutation p.Y654F 0.33 tolerated(1) benign(0.048) TCGA-B9-A8YI-01 11 128354849 128354849 T G ETS1 Missense_Mutation p.K244T 0.47 tolerated(0.19) possibly_damaging(0.494) TCGA-B9-A8YI-01 11 45203876 45203876 A C PRDM11 Missense_Mutation p.S67R 0.34 tolerated(0.07) possibly_damaging(0.681) TCGA-B9-A8YI-01 11 5969097 5969097 G T OR56A3 Missense_Mutation p.G174V 0.30 deleterious(0.04) benign(0.033) TCGA-B9-A8YI-01 11 85416053 85416053 T - SYTL2 Frame_Shift_Del p.I1046Sfs*2 0.26 TCGA-B9-A8YI-01 11 86661994 86661994 A T FZD4 3'UTR 0.27 TCGA-B9-A8YI-01 12 103248991 103248991 A T PAH Missense_Mutation p.F210Y 0.43 deleterious(0) probably_damaging(0.994) TCGA-B9-A8YI-01 12 109212091 109212091 T A SSH1 Splice_Site p.X72_splice 0.45 TCGA-B9-A8YI-01 12 112457648 112457648 A C ERP29 Missense_Mutation p.E78A 0.33 tolerated(0.13) possibly_damaging(0.746) TCGA-B9-A8YI-01 12 118852238 118852238 A C SUDS3 Nonstop_Mutation p.*329Cext*8 0.36 TCGA-B9-A8YI-01 12 125420120 125420120 T C RPL22P19 RNA 0.36 TCGA-B9-A8YI-01 12 46322508 46322509 - A SCAF11 Frame_Shift_Ins p.N326* 0.23 TCGA-B9-A8YI-01 12 48866715 48866715 C G ANP32D Missense_Mutation p.L90V 0.33 deleterious(0) probably_damaging(0.951) TCGA-B9-A8YI-01 12 52201156 52201161 GGAAGG - SCN8A In_Frame_Del p.E1963_G1964del 0.32 TCGA-B9-A8YI-01 12 54422191 54422191 T A HOXC6 5'UTR 0.32 TCGA-B9-A8YI-01 12 54930736 54930739 AACA T NCKAP1L In_Frame_Del p.N1028_N1029delinsY 0.33 TCGA-B9-A8YI-01 12 674467 674467 G T NINJ2 Missense_Mutation p.F167L 0.64 deleterious(0.03) probably_damaging(0.999) TCGA-B9-A8YI-01 12 72179447 72179447 T C RAB21 Silent p.S224S 0.32 TCGA-B9-A8YI-01 12 72179448 72179448 G A RAB21 Missense_Mutation p.G225R 0.32 deleterious_low_confidence(0) possibly_damaging(0.755) TCGA-B9-A8YI-01 13 101077890 101077890 G C PCCA Missense_Mutation p.E584Q 0.35 tolerated(0.22) benign(0.027) TCGA-B9-A8YI-01 13 103498666 103498666 T G ERCC5 Missense_Mutation p.V17G 0.38 deleterious(0) probably_damaging(0.909) TCGA-B9-A8YI-01 13 108882094 108882094 G A ABHD13 Silent p.V176V 0.33 TCGA-B9-A8YI-01 13 39438516 39438516 T C FREM2 Missense_Mutation p.Y2586H 0.34 tolerated(0.28) possibly_damaging(0.768) TCGA-B9-A8YI-01 13 45515340 45515340 C G NUFIP1 3'UTR 0.41 TCGA-B9-A8YI-01 13 70371015 70371015 C G KLHL1 Missense_Mutation p.Q498H 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-B9-A8YI-01 14 105716843 105716843 C A BTBD6 Missense_Mutation p.T431K 0.15 deleterious(0) probably_damaging(0.975) TCGA-B9-A8YI-01 15 41191884 41191884 G A VPS18 Missense_Mutation p.D290N 0.62 tolerated(0.95) benign(0.003) TCGA-B9-A8YI-01 15 49089695 49089695 G T CEP152 Silent p.R115R 0.41 TCGA-B9-A8YI-01 15 58971446 58971446 C T ADAM10 Missense_Mutation p.D121N 0.37 tolerated(0.23) benign(0.129) TCGA-B9-A8YI-01 15 63991178 63991178 A G HERC1 Silent p.L1552L 0.42 TCGA-B9-A8YI-01 15 65822962 65822962 G C PTPLAD1 5'UTR 0.35 TCGA-B9-A8YI-01 15 77924661 77924661 G T LINGO1 5'UTR 0.30 TCGA-B9-A8YI-01 15 90774633 90774633 G T CIB1 Missense_Mutation p.T101K 0.36 tolerated(0.18) benign(0.033) TCGA-B9-A8YI-01 16 16244452 16244452 G C ABCC6 Silent p.S1462S 0.38 TCGA-B9-A8YI-01 16 67264360 67264360 C T FHOD1 Missense_Mutation p.E970K 0.14 deleterious(0.05) probably_damaging(0.95) TCGA-B9-A8YI-01 16 67862427 67862427 A G CENPT Silent p.H504H 0.19 TCGA-B9-A8YI-01 16 68867229 68867229 C - CDH1 Frame_Shift_Del p.P826Lfs*20 0.20 TCGA-B9-A8YI-01 16 70497156 70497156 T A FUK Missense_Mutation p.S21R 0.18 tolerated(0.08) benign(0.361) TCGA-B9-A8YI-01 17 10596136 10596136 G C SCO1 Missense_Mutation p.C169W 0.35 deleterious(0) probably_damaging(1) TCGA-B9-A8YI-01 17 39723874 39723874 C G KRT9 Missense_Mutation p.G508A 0.42 tolerated_low_confidence(0.16) unknown(0) TCGA-B9-A8YI-01 17 39981892 39981892 C T NT5C3B Silent p.E262E 0.45 TCGA-B9-A8YI-01 17 42457409 42457409 C A ITGA2B Missense_Mutation p.K571N 0.41 tolerated(0.49) benign(0.016) TCGA-B9-A8YI-01 17 44954298 44954298 C G WNT9B 3'UTR 0.35 TCGA-B9-A8YI-01 17 45916949 45916949 C A SCRN2 Silent p.L139L 0.28 TCGA-B9-A8YI-01 17 47219412 47219413 TC - B4GALNT2 Frame_Shift_Del p.N137Kfs*5 0.22 TCGA-B9-A8YI-01 17 47888871 47888871 A C KAT7 Missense_Mutation p.K263Q 0.43 tolerated(0.22) benign(0.005) TCGA-B9-A8YI-01 17 649755 649755 C T GEMIN4 Missense_Mutation p.G510S 0.28 deleterious(0) probably_damaging(1) TCGA-B9-A8YI-01 17 80156222 80156222 C A CCDC57 Nonsense_Mutation p.E162* 0.25 TCGA-B9-A8YI-01 17 9820477 9820477 G A GAS7 3'UTR 0.45 TCGA-B9-A8YI-01 18 44260388 44260388 A C ST8SIA5 Missense_Mutation p.Y250D 0.52 probably_damaging(0.998) TCGA-B9-A8YI-01 18 9337206 9337206 T G TWSG1 5'UTR 0.25 TCGA-B9-A8YI-01 19 12187708 12187708 G C ZNF844 Silent p.V591V 0.35 TCGA-B9-A8YI-01 19 15230250 15230250 G - ILVBL Frame_Shift_Del p.P298Qfs*28 0.26 TCGA-B9-A8YI-01 19 21608532 21608532 A C ZNF493 3'UTR 0.33 TCGA-B9-A8YI-01 19 47155784 47155784 C G DACT3 Intron 0.38 TCGA-B9-A8YI-01 1 1103319 1103319 C T MIR200A RNA 0.42 TCGA-B9-A8YI-01 1 156453166 156453166 A - MEF2D 5'UTR 0.14 TCGA-B9-A8YI-01 1 173754361 173754361 A G KLHL20 Silent p.T602T 0.44 TCGA-B9-A8YI-01 1 176105635 176105635 T G RFWD2 Missense_Mutation p.K294Q 0.32 tolerated(0.36) benign(0.039) TCGA-B9-A8YI-01 1 185276272 185276272 C A IVNS1ABP Splice_Site p.X178_splice 0.40 TCGA-B9-A8YI-01 1 210415797 210415797 T C SERTAD4 3'UTR 0.33 TCGA-B9-A8YI-01 1 214568286 214568292 GAATGGT - PTPN14 Frame_Shift_Del p.T266* 0.28 TCGA-B9-A8YI-01 1 220316411 220316411 A - IARS2 Frame_Shift_Del p.N897Mfs*10 0.23 TCGA-B9-A8YI-01 1 241823862 241823862 C A WDR64 Nonsense_Mutation p.S59* 0.31 TCGA-B9-A8YI-01 1 248004550 248004550 G A OR11L1 Missense_Mutation p.P217S 0.32 tolerated(1) benign(0) TCGA-B9-A8YI-01 1 25784936 25784936 G A TMEM57 Missense_Mutation p.G236D 0.36 tolerated(0.33) probably_damaging(0.993) TCGA-B9-A8YI-01 1 26230144 26230144 T A STMN1 Missense_Mutation p.E58D 0.24 deleterious(0.01) possibly_damaging(0.555) TCGA-B9-A8YI-01 1 27742557 27742557 A C WASF2 Silent p.P153P 0.30 TCGA-B9-A8YI-01 1 28212455 28212455 C G THEMIS2 3'UTR 0.30 TCGA-B9-A8YI-01 1 29585188 29585188 G C PTPRU Missense_Mutation p.G126A 0.37 tolerated(0.06) probably_damaging(1) TCGA-B9-A8YI-01 1 35370206 35370206 C T DLGAP3 Nonsense_Mutation p.W260* 0.33 TCGA-B9-A8YI-01 1 6214783 6214783 C T CHD5 Missense_Mutation p.V228I 0.42 tolerated_low_confidence(0.4) benign(0.001) TCGA-B9-A8YI-01 1 8926559 8926559 G T ENO1 Missense_Mutation p.A149E 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-B9-A8YI-01 20 1457834 1457834 A C SIRPB2 Intron 0.29 TCGA-B9-A8YI-01 20 49354467 49354467 T C PARD6B Missense_Mutation p.L47P 0.30 deleterious(0) probably_damaging(0.996) TCGA-B9-A8YI-01 20 56140427 56140427 C T PCK1 Missense_Mutation p.P479L 0.44 deleterious(0) probably_damaging(0.996) TCGA-B9-A8YI-01 20 61981808 61981808 G - CHRNA4 Frame_Shift_Del p.L319Cfs*40 0.24 TCGA-B9-A8YI-01 22 36863738 36863738 G T TXN2 3'UTR 0.42 TCGA-B9-A8YI-01 22 47433038 47433038 C A TBC1D22A Missense_Mutation p.L425M 0.31 deleterious(0) probably_damaging(1) TCGA-B9-A8YI-01 2 113090134 113090134 T C ZC3H6 3'UTR 0.33 TCGA-B9-A8YI-01 2 136614438 136614438 G A MCM6 Missense_Mutation p.R496W 0.29 deleterious(0) probably_damaging(1) TCGA-B9-A8YI-01 2 179604477 179604477 T A TTN Missense_Mutation p.I4495F 0.36 TCGA-B9-A8YI-01 2 179604480 179604480 T G TTN Silent p.R4494R 0.37 TCGA-B9-A8YI-01 2 225360561 225360561 T - CUL3 Frame_Shift_Del p.K610Nfs*44 0.28 TCGA-B9-A8YI-01 2 233001388 233001388 C T DIS3L2 Silent p.C303C 0.34 TCGA-B9-A8YI-01 2 39201053 39201054 AT - ARHGEF33 3'UTR 0.11 TCGA-B9-A8YI-01 2 55900032 55900032 G C PNPT1 Missense_Mutation p.H288D 0.40 tolerated(0.08) benign(0.002) TCGA-B9-A8YI-01 2 97427711 97427711 C G CNNM4 Missense_Mutation p.D325E 0.37 tolerated(0.12) probably_damaging(0.999) TCGA-B9-A8YI-01 3 13383246 13383246 A G NUP210 Splice_Site p.X1076_splice 0.38 TCGA-B9-A8YI-01 3 134264553 134264553 A G CEP63 Missense_Mutation p.I227M 0.33 tolerated(0.08) probably_damaging(0.994) TCGA-B9-A8YI-01 3 151012726 151012726 C G GPR87 Missense_Mutation p.G103A 0.29 tolerated(0.08) possibly_damaging(0.578) TCGA-B9-A8YI-01 3 15531095 15531095 G T COLQ Nonsense_Mutation p.C52* 0.34 TCGA-B9-A8YI-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.39 deleterious(0.04) probably_damaging(0.96) TCGA-B9-A8YI-01 3 179519441 179519441 T - PEX5L 3'UTR 0.50 TCGA-B9-A8YI-01 3 41275683 41275683 T G CTNNB1 Silent p.P526P 0.40 TCGA-B9-A8YI-01 3 98241616 98241616 G A CLDND1 Intron 0.29 TCGA-B9-A8YI-01 4 123222494 123222494 G T KIAA1109 Missense_Mutation p.G3143V 0.34 benign(0.01) TCGA-B9-A8YI-01 4 124323105 124323105 C T SPRY1 Missense_Mutation p.A120V 0.40 tolerated(0.12) possibly_damaging(0.877) TCGA-B9-A8YI-01 4 154625017 154625017 C T TLR2 Missense_Mutation p.P320S 0.35 tolerated(0.21) benign(0.065) TCGA-B9-A8YI-01 4 159816926 159816926 C G FNIP2 Missense_Mutation p.L1059V 0.27 deleterious(0) probably_damaging(1) TCGA-B9-A8YI-01 4 24521846 24521846 A C MIR573 RNA 0.34 TCGA-B9-A8YI-01 4 38690438 38690438 T C KLF3 Missense_Mutation p.M97T 0.35 tolerated(0.46) benign(0.014) TCGA-B9-A8YI-01 4 4389387 4389387 A G NSG1 Missense_Mutation p.K11E 0.34 deleterious(0) benign(0.21) TCGA-B9-A8YI-01 4 514958 514958 A C PIGG Silent p.R410R 0.39 TCGA-B9-A8YI-01 4 74703566 74703566 C A CXCL6 3'UTR 0.38 TCGA-B9-A8YI-01 4 83424056 83424056 T G TMEM150C Silent p.P53P 0.35 TCGA-B9-A8YI-01 4 85748064 85748064 T C WDFY3 Missense_Mutation p.T343A 0.35 tolerated(0.09) benign(0.018) TCGA-B9-A8YI-01 5 131705653 131705654 - C SLC22A5 5'UTR 0.33 TCGA-B9-A8YI-01 5 131973842 131973842 A C RAD50 Missense_Mutation p.Y1182S 0.37 deleterious(0) probably_damaging(1) TCGA-B9-A8YI-01 5 139494641 139494641 G A PURA Missense_Mutation p.C292Y 0.36 deleterious_low_confidence(0) unknown(0) TCGA-B9-A8YI-01 5 149449790 149449790 G A CSF1R Missense_Mutation p.P425L 0.39 deleterious(0) probably_damaging(1) TCGA-B9-A8YI-01 5 160763641 160763641 G T GABRB2 Missense_Mutation p.T226K 0.36 deleterious(0) probably_damaging(0.999) TCGA-B9-A8YI-01 5 17354674 17354674 C T CTD-2139B15.2 RNA 0.39 TCGA-B9-A8YI-01 5 176025462 176025462 C T GPRIN1 Silent p.P458P 0.34 TCGA-B9-A8YI-01 5 176799074 176799074 T C RGS14 Nonstop_Mutation p.*567Rext*163 0.20 TCGA-B9-A8YI-01 5 93722048 93722048 C T KIAA0825 Missense_Mutation p.R1173Q 0.34 tolerated(0.45) benign(0.016) TCGA-B9-A8YI-01 6 134492291 134492291 G T SGK1 Missense_Mutation p.A398D 0.37 tolerated(0.6) benign(0.116) TCGA-B9-A8YI-01 6 146215295 146215296 - T SHPRH Frame_Shift_Ins p.T1563Dfs*10 0.28 TCGA-B9-A8YI-01 6 148855991 148855991 C T SASH1 Silent p.H683H 0.41 TCGA-B9-A8YI-01 6 152473219 152473219 A G SYNE1 Missense_Mutation p.Y8063H 0.34 probably_damaging(0.994) TCGA-B9-A8YI-01 6 157099429 157099429 G A ARID1B Silent p.Q122Q 0.17 TCGA-B9-A8YI-01 6 160201286 160201286 G T TCP1 Intron 0.27 TCGA-B9-A8YI-01 6 160466824 160466824 T A IGF2R Missense_Mutation p.C605S 0.27 deleterious(0) probably_damaging(1) TCGA-B9-A8YI-01 6 28060579 28060579 C T ZNF165 3'Flank 0.31 TCGA-B9-A8YI-01 6 30917945 30917945 G A DPCR1 Silent p.L568L 0.39 TCGA-B9-A8YI-01 6 35604801 35604826 ACTAAAGACAAATGGTTCATTTCTAT - FKBP5 Frame_Shift_Del p.D72Afs*41 0.20 TCGA-B9-A8YI-01 6 49668403 49668403 G A CRISP2 Missense_Mutation p.P54L 0.39 tolerated(0.05) benign(0.071) TCGA-B9-A8YI-01 6 74149944 74149944 T G MB21D1 Missense_Mutation p.N368H 0.27 deleterious(0.05) benign(0.178) TCGA-B9-A8YI-01 7 105516974 105516974 G C ATXN7L1 Missense_Mutation p.L11V 0.28 tolerated_low_confidence(0.09) benign(0.186) TCGA-B9-A8YI-01 7 151874116 151874116 C T KMT2C Missense_Mutation p.D2808N 0.29 benign(0.131) TCGA-B9-A8YI-01 7 20418715 20418715 A C ITGB8 Missense_Mutation p.K144Q 0.31 deleterious(0.04) benign(0.069) TCGA-B9-A8YI-01 7 27211696 27211696 T C HOXA10 Missense_Mutation p.E352G 0.27 deleterious(0) probably_damaging(1) TCGA-B9-A8YI-01 7 48317949 48317949 C A ABCA13 Missense_Mutation p.F2386L 0.33 benign(0.001) TCGA-B9-A8YI-01 7 73184246 73184246 A G CLDN3 Missense_Mutation p.I45T 0.34 tolerated(0.35) benign(0.01) TCGA-B9-A8YI-01 7 87760960 87760960 T G ADAM22 Intron 0.62 TCGA-B9-A8YI-01 7 88964261 88964261 C G ZNF804B Missense_Mutation p.N655K 0.36 tolerated(0.55) benign(0.021) TCGA-B9-A8YI-01 8 120255915 120255919 GAAAT - MAL2 3'UTR 0.47 TCGA-B9-A8YI-01 8 9564428 9564428 T C TNKS Silent p.A459A 0.38 TCGA-B9-A8YI-01 9 137989668 137989668 G T OLFM1 Intron 0.30 TCGA-B9-A8YI-01 9 140009153 140009153 G C DPP7 Missense_Mutation p.P5A 0.32 tolerated_low_confidence(0.2) unknown(0) TCGA-B9-A8YI-01 9 140354898 140354898 G T PNPLA7 Missense_Mutation p.P1326T 0.34 tolerated_low_confidence(0.06) benign(0.015) TCGA-B9-A8YI-01 9 33167143 33167151 TCAGGAGCG GC B4GALT1 Frame_Shift_Del p.P6Rfs*40 0.25 TCGA-B9-A8YI-01 X 114953290 114953290 A G RP1-241P17.4 Missense_Mutation p.F87S 0.64 deleterious(0.01) possibly_damaging(0.596) TCGA-B9-A8YI-01 X 129263426 129263426 T C AIFM1 3'UTR 0.83 TCGA-B9-A8YI-01 X 153713966 153713966 C T UBL4A Missense_Mutation p.R129H 0.66 deleterious(0.02) possibly_damaging(0.724) TCGA-B9-A8YI-01 X 46898381 46898381 C G JADE3 Missense_Mutation p.P296A 0.68 deleterious(0) probably_damaging(0.973) TCGA-B9-A8YI-01 X 48763629 48763629 C T SLC35A2 Intron 0.79 TCGA-B9-A8YI-01 X 78622633 78622633 C T ITM2A Missense_Mutation p.R27H 0.17 tolerated(0.49) benign(0.001) TCGA-BQ-5875-01 10 104130546 104130546 G T GBF1 Missense_Mutation p.V1196L 0.41 tolerated(0.67) benign(0.009) TCGA-BQ-5875-01 10 104353417 104353417 C A SUFU Missense_Mutation p.L208I 0.51 deleterious(0.01) probably_damaging(0.994) TCGA-BQ-5875-01 10 71176138 71176138 T C TACR2 5'UTR 0.34 TCGA-BQ-5875-01 10 98136535 98136535 C A TLL2 Missense_Mutation p.A788S 0.31 tolerated(0.47) benign(0.005) TCGA-BQ-5875-01 11 104879534 104879534 T G CASP5 Missense_Mutation p.K74Q 0.38 tolerated(0.14) benign(0.113) TCGA-BQ-5875-01 11 18101957 18101957 C G SAAL1 Missense_Mutation p.V472L 0.24 tolerated_low_confidence(0.48) benign(0.016) TCGA-BQ-5875-01 11 4967850 4967856 AGGGAAG - OR51A4 Frame_Shift_Del p.L159Sfs*5 0.22 TCGA-BQ-5875-01 11 4976463 4976469 AGGGAAG - OR51A2 Frame_Shift_Del p.L159Sfs*5 0.23 TCGA-BQ-5875-01 11 62752181 62752181 G A SLC22A6 5'UTR 0.26 TCGA-BQ-5875-01 11 74979954 74979954 C T ARRB1 Missense_Mutation p.E358K 0.33 tolerated(0.08) benign(0.04) TCGA-BQ-5875-01 11 77934564 77934564 G A GAB2 Silent p.D487D 0.31 TCGA-BQ-5875-01 11 840428 840428 G A POLR2L Silent p.L50L 0.29 TCGA-BQ-5875-01 12 118462710 118462710 C A RFC5 Nonsense_Mutation p.S159* 0.07 TCGA-BQ-5875-01 12 118627860 118627860 G A TAOK3 Intron 0.30 TCGA-BQ-5875-01 12 19615463 19615463 G C AEBP2 Missense_Mutation p.D231H 0.41 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-BQ-5875-01 12 404935 404935 G C KDM5A Missense_Mutation p.P1420R 0.36 tolerated(0.16) benign(0.202) TCGA-BQ-5875-01 12 48538849 48538849 C A PFKM Silent p.A747A 0.34 TCGA-BQ-5875-01 12 54903761 54903761 T G NCKAP1L Missense_Mutation p.S243A 0.37 tolerated(0.06) possibly_damaging(0.758) TCGA-BQ-5875-01 14 73412735 73412735 G A DCAF4 Silent p.K226K 0.36 TCGA-BQ-5875-01 16 19516303 19516303 A C GDE1 Missense_Mutation p.F250V 0.30 tolerated(0.31) benign(0.103) TCGA-BQ-5875-01 16 22237117 22237117 C T EEF2K Missense_Mutation p.H23Y 0.21 tolerated_low_confidence(0.11) benign(0.05) TCGA-BQ-5875-01 16 57413588 57413588 A G CX3CL1 Missense_Mutation p.K38R 0.19 tolerated(0.23) benign(0.015) TCGA-BQ-5875-01 16 67981315 67981315 C G SLC12A4 Missense_Mutation p.G666A 0.20 deleterious(0.04) probably_damaging(1) TCGA-BQ-5875-01 16 68224719 68224719 C A NFATC3 Missense_Mutation p.P716Q 0.56 deleterious(0) possibly_damaging(0.628) TCGA-BQ-5875-01 16 89715819 89715819 C T CHMP1A Silent p.R64R 0.29 TCGA-BQ-5875-01 16 89756963 89756963 C T CDK10 Missense_Mutation p.R55W 0.19 deleterious(0) probably_damaging(0.993) TCGA-BQ-5875-01 17 26604362 26604363 - A AC061975.8 5'Flank 0.35 TCGA-BQ-5875-01 17 29162059 29162059 G C ATAD5 Missense_Mutation p.K320N 0.37 deleterious(0) possibly_damaging(0.611) TCGA-BQ-5875-01 17 30348539 30348539 G T LRRC37B Missense_Mutation p.R125L 0.31 tolerated(1) benign(0) TCGA-BQ-5875-01 17 7250507 7250507 G A ACAP1 Nonsense_Mutation p.W430* 0.32 TCGA-BQ-5875-01 17 74772621 74772621 C T MFSD11 Nonsense_Mutation p.Q395* 0.49 TCGA-BQ-5875-01 18 40853823 40853823 C T SYT4 Missense_Mutation p.D191N 0.41 deleterious(0) probably_damaging(1) TCGA-BQ-5875-01 19 17396342 17396342 C T ANKLE1 Silent p.A493A 0.30 TCGA-BQ-5875-01 19 35434608 35434608 G - ZNF30 Frame_Shift_Del p.K247Nfs*124 0.40 TCGA-BQ-5875-01 19 36831787 36831787 C T ZFP14 Missense_Mutation p.C314Y 0.38 deleterious(0) probably_damaging(1) TCGA-BQ-5875-01 19 3765208 3765208 G A MRPL54 Missense_Mutation p.A55T 0.51 tolerated(0.25) benign(0.018) TCGA-BQ-5875-01 19 44635911 44635911 A C ZNF225 Silent p.R382R 0.45 TCGA-BQ-5875-01 19 57888699 57888699 G A ZNF547 Missense_Mutation p.A119T 0.30 tolerated(0.14) benign(0.063) TCGA-BQ-5875-01 1 111146524 111146524 C A KCNA2 Missense_Mutation p.R294L 0.35 deleterious(0) benign(0.13) TCGA-BQ-5875-01 1 118535132 118535132 A T SPAG17 Missense_Mutation p.V1773D 0.24 deleterious(0.02) possibly_damaging(0.784) TCGA-BQ-5875-01 1 15894410 15894410 G A DNAJC16 Missense_Mutation p.G696D 0.22 deleterious(0) probably_damaging(1) TCGA-BQ-5875-01 1 15894493 15894493 G - DNAJC16 Frame_Shift_Del p.S725Rfs*31 0.23 TCGA-BQ-5875-01 1 159169659 159169659 G A CADM3 Silent p.R391R 0.07 TCGA-BQ-5875-01 1 171303684 171303684 T C FMO4 Missense_Mutation p.I321T 0.39 deleterious(0.01) possibly_damaging(0.828) TCGA-BQ-5875-01 1 180063597 180063597 A T CEP350 Missense_Mutation p.Q2786L 0.35 benign(0.341) TCGA-BQ-5875-01 1 32203282 32203282 G A BAI2 Silent p.T949T 0.35 TCGA-BQ-5875-01 1 48688404 48688408 AACAG - SLC5A9 5'UTR 0.14 TCGA-BQ-5875-01 1 65895651 65895651 C A LEPROT Silent p.R67R 0.08 TCGA-BQ-5875-01 1 8425998 8425998 T - RERE Frame_Shift_Del p.T441Pfs*45 0.20 TCGA-BQ-5875-01 1 94502837 94502837 C A ABCA4 Missense_Mutation p.G1226V 0.18 deleterious(0.01) probably_damaging(1) TCGA-BQ-5875-01 20 25457543 25457543 C T NINL Missense_Mutation p.R795H 0.16 tolerated(0.17) benign(0) TCGA-BQ-5875-01 20 34288875 34288875 T C ROMO1 3'UTR 0.35 TCGA-BQ-5875-01 21 43529716 43529716 G A UMODL1 Missense_Mutation p.A522T 0.05 tolerated(0.39) possibly_damaging(0.832) TCGA-BQ-5875-01 21 46306670 46306670 A C ITGB2 Missense_Mutation p.L743R 0.15 tolerated(0.61) possibly_damaging(0.616) TCGA-BQ-5875-01 22 30038223 30038223 C A NF2 Nonsense_Mutation p.Y132* 0.69 TCGA-BQ-5875-01 2 102626224 102626224 G T IL1R2 Missense_Mutation p.D90Y 0.31 deleterious(0.02) benign(0.038) TCGA-BQ-5875-01 2 162711596 162711596 C A SLC4A10 Missense_Mutation p.T178N 0.41 deleterious(0) probably_damaging(0.95) TCGA-BQ-5875-01 2 162711597 162711597 T G SLC4A10 Silent p.T178T 0.41 TCGA-BQ-5875-01 2 16736394 16736394 A T FAM49A Missense_Mutation p.I284K 0.23 deleterious(0) probably_damaging(0.962) TCGA-BQ-5875-01 2 172379114 172379114 G A CYBRD1 Missense_Mutation p.G20D 0.11 deleterious(0) probably_damaging(1) TCGA-BQ-5875-01 2 204305855 204305855 C T RAPH1 Silent p.P686P 0.05 TCGA-BQ-5875-01 2 46815297 46815297 T C PIGF Intron 0.48 TCGA-BQ-5875-01 2 47300864 47300864 C T TTC7A Silent p.G793G 0.39 TCGA-BQ-5875-01 2 9630624 9630624 C T ADAM17 Missense_Mutation p.M719I 0.21 tolerated(0.12) benign(0.005) TCGA-BQ-5875-01 3 101378652 101378652 G C ZBTB11 Missense_Mutation p.T674R 0.38 deleterious(0) probably_damaging(1) TCGA-BQ-5875-01 3 129023705 129023706 CA - HMCES 3'UTR 0.28 TCGA-BQ-5875-01 3 36587768 36587768 T G STAC Missense_Mutation p.L399R 0.76 deleterious(0) probably_damaging(1) TCGA-BQ-5875-01 3 47061276 47061276 T A SETD2 Nonsense_Mutation p.K2469* 0.84 TCGA-BQ-5875-01 3 50386372 50386372 T A NPRL2 Missense_Mutation p.D173V 0.73 deleterious(0.01) probably_damaging(0.97) TCGA-BQ-5875-01 3 52441190 52441190 C T BAP1 Missense_Mutation p.G194R 0.65 deleterious(0) probably_damaging(1) TCGA-BQ-5875-01 4 159138552 159138552 A - TMEM144 Frame_Shift_Del p.T105Lfs*23 0.29 TCGA-BQ-5875-01 4 44450342 44450342 C T KCTD8 Missense_Mutation p.D67N 0.39 tolerated(0.41) benign(0.188) TCGA-BQ-5875-01 4 57262889 57262889 G A PPAT Missense_Mutation p.A418V 0.38 deleterious(0) probably_damaging(0.987) TCGA-BQ-5875-01 4 72204858 72204858 C G SLC4A4 Intron 0.09 TCGA-BQ-5875-01 5 132270292 132270292 T G AFF4 Silent p.S155S 0.43 TCGA-BQ-5875-01 5 54429246 54429246 C A CDC20B Missense_Mutation p.D231Y 0.38 deleterious(0) probably_damaging(0.961) TCGA-BQ-5875-01 6 56480769 56480769 C T DST Intron 0.41 TCGA-BQ-5875-01 7 114299729 114299729 G A FOXP2 Splice_Site p.X574_splice 0.41 TCGA-BQ-5875-01 7 140402766 140402766 T A NDUFB2 Missense_Mutation p.F67I 0.32 deleterious(0) probably_damaging(0.999) TCGA-BQ-5875-01 7 35930343 35930344 AA T SEPT7 Frame_Shift_Del p.K314Ifs*5 0.29 TCGA-BQ-5875-01 8 144998457 144998457 C T PLEC Silent p.L2017L 0.40 TCGA-BQ-5875-01 8 28209093 28209093 C A ZNF395 Silent p.P384P 0.34 TCGA-BQ-5875-01 8 8234118 8234118 C A SGK223 Missense_Mutation p.G601C 0.25 probably_damaging(0.931) TCGA-BQ-5875-01 9 79955424 79955424 T A VPS13A Silent p.A2328A 0.45 TCGA-BQ-5875-01 X 102332664 102332664 C T NXF3 Missense_Mutation p.V488M 0.04 tolerated(0.25) possibly_damaging(0.487) TCGA-BQ-5875-01 X 119739295 119739296 CC ATAT MCTS1 Frame_Shift_Ins p.Q17Yfs*3 0.30 TCGA-BQ-5875-01 X 123184115 123184118 AATG - STAG2 Frame_Shift_Del p.N325Tfs*4 0.38 TCGA-BQ-5875-01 X 154563881 154563881 C G CLIC2 5'UTR 0.33 TCGA-BQ-5875-01 X 46491075 46491075 A T SLC9A7 Silent p.V561V 0.36 TCGA-BQ-5875-01 X 53564649 53564649 C T HUWE1 Missense_Mutation p.R4002H 0.09 unknown(0) TCGA-BQ-5876-01 10 101460770 101460770 T G ENTPD7 Missense_Mutation p.F459C 0.34 deleterious(0) possibly_damaging(0.908) TCGA-BQ-5876-01 11 130785820 130785820 T A SNX19 Silent p.T5T 0.46 TCGA-BQ-5876-01 11 47711964 47711964 T G AGBL2 Missense_Mutation p.N432T 0.23 deleterious(0) probably_damaging(1) TCGA-BQ-5876-01 11 60696113 60696113 G C TMEM132A Missense_Mutation p.A183P 0.46 tolerated(0.05) probably_damaging(0.971) TCGA-BQ-5876-01 11 64111815 64111815 C A CCDC88B Missense_Mutation p.P601H 0.06 deleterious_low_confidence(0.04) benign(0.016) TCGA-BQ-5876-01 11 65113198 65113198 G A DPF2 Silent p.L233L 0.39 TCGA-BQ-5876-01 11 66468283 66468283 G T SPTBN2 Missense_Mutation p.T1096N 0.54 tolerated(0.1) possibly_damaging(0.666) TCGA-BQ-5876-01 11 82877600 82877600 A G PCF11 Missense_Mutation p.D554G 0.27 deleterious(0.02) probably_damaging(0.971) TCGA-BQ-5876-01 12 123479959 123479959 C T PITPNM2 Silent p.Q677Q 0.30 TCGA-BQ-5876-01 12 130883630 130883631 - T RIMBP2 3'UTR 0.40 TCGA-BQ-5876-01 12 7045767 7045767 C A ATN1 Missense_Mutation p.P446H 0.39 probably_damaging(0.963) TCGA-BQ-5876-01 12 80726809 80726813 ACATC - OTOGL Frame_Shift_Del p.I1450Cfs*3 0.29 TCGA-BQ-5876-01 13 103510748 103510748 T - BIVM-ERCC5 Frame_Shift_Del p.L644Yfs*26 0.30 TCGA-BQ-5876-01 13 92345909 92345909 C T GPC5 Missense_Mutation p.A265V 0.37 tolerated(0.19) benign(0.04) TCGA-BQ-5876-01 14 22362920 22362920 A C TRAV8-4 Silent p.G17G 0.65 TCGA-BQ-5876-01 14 51387749 51387749 C T PYGL Missense_Mutation p.G233S 0.58 deleterious(0) probably_damaging(0.977) TCGA-BQ-5876-01 14 91161893 91161893 C G TTC7B Missense_Mutation p.R243T 0.57 deleterious(0) probably_damaging(0.954) TCGA-BQ-5876-01 15 42105966 42105966 G A MAPKBP1 Missense_Mutation p.V329I 0.27 tolerated(0.6) benign(0.002) TCGA-BQ-5876-01 15 51289917 51289917 T A AP4E1 Missense_Mutation p.I914K 0.44 tolerated_low_confidence(0.29) benign(0.016) TCGA-BQ-5876-01 15 68479999 68479999 T C PIAS1 Silent p.S594S 0.44 TCGA-BQ-5876-01 16 30581595 30581595 G A ZNF688 Missense_Mutation p.A158V 0.44 tolerated(0.17) benign(0.004) TCGA-BQ-5876-01 16 53708941 53708941 A C RPGRIP1L Missense_Mutation p.I290M 0.43 deleterious(0.02) benign(0.092) TCGA-BQ-5876-01 17 28543164 28543164 G T SLC6A4 Missense_Mutation p.P303H 0.32 deleterious(0) probably_damaging(1) TCGA-BQ-5876-01 17 62223780 62223780 C A TEX2 3'Flank 0.36 TCGA-BQ-5876-01 17 6942204 6942204 C G SLC16A13 Silent p.L359L 0.07 TCGA-BQ-5876-01 17 7357711 7357711 C G CHRNB1 Missense_Mutation p.P306A 0.28 deleterious(0) probably_damaging(0.961) TCGA-BQ-5876-01 17 7536218 7536218 C A SHBG Missense_Mutation p.A334D 0.47 tolerated(0.69) benign(0.004) TCGA-BQ-5876-01 18 44639349 44639349 A T HDHD2 Silent p.T225T 0.30 TCGA-BQ-5876-01 19 46387423 46387423 G A IRF2BP1 Missense_Mutation p.A537V 0.12 deleterious(0.01) benign(0.019) TCGA-BQ-5876-01 19 49793532 49793532 G T SLC6A16 Missense_Mutation p.P687T 0.03 tolerated(0.1) benign(0.167) TCGA-BQ-5876-01 19 50970929 50970929 G A FAM71E1 Missense_Mutation p.R217C 0.40 tolerated(0.16) benign(0.151) TCGA-BQ-5876-01 19 53343640 53343640 A T ZNF468 3'UTR 0.54 TCGA-BQ-5876-01 19 57066282 57066282 T C ZFP28 Missense_Mutation p.F710L 0.34 deleterious(0) probably_damaging(1) TCGA-BQ-5876-01 19 57066298 57066298 C A ZFP28 Missense_Mutation p.S715Y 0.33 tolerated(0.14) possibly_damaging(0.861) TCGA-BQ-5876-01 19 9083127 9083127 C A MUC16 Missense_Mutation p.E2896D 0.25 unknown(0) TCGA-BQ-5876-01 1 100572514 100572514 A C SASS6 Silent p.V454V 0.29 TCGA-BQ-5876-01 1 12327038 12327038 T C VPS13D Silent p.T565T 0.16 TCGA-BQ-5876-01 1 150679129 150679129 T A HORMAD1 Missense_Mutation p.N235I 0.38 deleterious(0.02) possibly_damaging(0.775) TCGA-BQ-5876-01 1 155223872 155223872 C A FAM189B Intron 0.34 TCGA-BQ-5876-01 1 159176128 159176128 C A DARC Missense_Mutation p.T302K 0.37 deleterious(0.01) possibly_damaging(0.799) TCGA-BQ-5876-01 1 161019045 161019045 C T ARHGAP30 Missense_Mutation p.C589Y 0.24 deleterious(0.04) probably_damaging(0.993) TCGA-BQ-5876-01 1 167515357 167515357 A G CREG1 Missense_Mutation p.Y214H 0.41 deleterious(0) probably_damaging(1) TCGA-BQ-5876-01 1 204199641 204199641 A G PLEKHA6 Missense_Mutation p.M828T 0.33 deleterious(0) benign(0.254) TCGA-BQ-5876-01 1 44058242 44058242 C G PTPRF Missense_Mutation p.P595A 0.38 tolerated(0.59) benign(0.146) TCGA-BQ-5876-01 1 46654508 46654508 G T POMGNT1 Missense_Mutation p.N710K 0.13 benign(0.002) TCGA-BQ-5876-01 1 67861878 67861878 C T IL12RB2 3'UTR 0.14 TCGA-BQ-5876-01 1 85725088 85725088 T G C1orf52 Missense_Mutation p.N77H 0.38 tolerated(0.11) probably_damaging(0.996) TCGA-BQ-5876-01 1 90399406 90399406 A T LRRC8D Missense_Mutation p.K260I 0.38 deleterious(0.01) benign(0.169) TCGA-BQ-5876-01 1 94058022 94058022 C G BCAR3 Intron 0.42 TCGA-BQ-5876-01 1 94342829 94342829 A C DNTTIP2 Missense_Mutation p.I221S 0.36 deleterious(0.03) benign(0.037) TCGA-BQ-5876-01 20 22562341 22562341 T G FOXA2 3'UTR 0.55 TCGA-BQ-5876-01 20 33329544 33329544 T C NCOA6 Missense_Mutation p.K1506E 0.40 possibly_damaging(0.874) TCGA-BQ-5876-01 21 35468362 35468362 G A SLC5A3 Missense_Mutation p.A289T 0.42 deleterious(0) probably_damaging(0.998) TCGA-BQ-5876-01 22 16287580 16287580 G T POTEH Nonsense_Mutation p.C102* 0.50 TCGA-BQ-5876-01 22 24167461 24167461 A - SMARCB1 Frame_Shift_Del p.D282Afs*14 0.49 TCGA-BQ-5876-01 22 42342456 42342456 C G CENPM Silent p.S34S 0.14 TCGA-BQ-5876-01 2 100015354 100015354 A C EIF5B Silent p.T1179T 0.38 TCGA-BQ-5876-01 2 128484249 128484249 T - WDR33 Frame_Shift_Del p.K276Rfs*16 0.29 TCGA-BQ-5876-01 2 136873381 136873381 G T CXCR4 Silent p.I43I 0.36 TCGA-BQ-5876-01 2 179585887 179585887 G A TTN Missense_Mutation p.A7620V 0.11 TCGA-BQ-5876-01 2 196749321 196749321 T C DNAH7 Silent p.Q1917Q 0.29 TCGA-BQ-5876-01 2 197636546 197636546 T G GTF3C3 Missense_Mutation p.N729T 0.04 tolerated(0.1) benign(0.115) TCGA-BQ-5876-01 2 212426810 212426810 C A ERBB4 Missense_Mutation p.A769S 0.40 deleterious(0.03) probably_damaging(0.973) TCGA-BQ-5876-01 2 27664588 27664588 G A NRBP1 Missense_Mutation p.R506Q 0.38 deleterious(0.04) benign(0.015) TCGA-BQ-5876-01 2 32693046 32693046 T C BIRC6 Missense_Mutation p.Y1883H 0.10 probably_damaging(0.994) TCGA-BQ-5876-01 2 40656328 40656328 G T SLC8A1 Missense_Mutation p.R365S 0.04 deleterious(0) probably_damaging(0.984) TCGA-BQ-5876-01 2 48027125 48027125 C G MSH6 Missense_Mutation p.S668C 0.37 deleterious(0.02) possibly_damaging(0.868) TCGA-BQ-5876-01 2 55566741 55566741 T G CCDC88A Silent p.S459S 0.30 TCGA-BQ-5876-01 2 85536242 85536242 T C TCF7L1 Missense_Mutation p.M475T 0.33 tolerated(1) benign(0.002) TCGA-BQ-5876-01 2 86400770 86400770 T C IMMT Intron 0.38 TCGA-BQ-5876-01 2 9533671 9533671 T C ASAP2 Missense_Mutation p.L860S 0.33 tolerated(0.64) benign(0.046) TCGA-BQ-5876-01 3 196304554 196304554 A T FBXO45 Missense_Mutation p.Q183H 0.83 tolerated(0.63) benign(0.012) TCGA-BQ-5876-01 3 33434887 33434887 G C UBP1 Missense_Mutation p.L484V 0.77 tolerated(0.28) benign(0.001) TCGA-BQ-5876-01 3 47125642 47125643 - A SETD2 Frame_Shift_Ins p.M1877Nfs*10 0.46 TCGA-BQ-5876-01 5 140865325 140865325 C G PCDHGC4 Silent p.L195L 0.34 TCGA-BQ-5876-01 5 16764479 16764479 G T MYO10 Silent p.A402A 0.40 TCGA-BQ-5876-01 5 180661231 180661232 - C TRIM41 Frame_Shift_Ins p.R451Pfs*14 0.34 TCGA-BQ-5876-01 5 33561191 33561191 G C ADAMTS12 Missense_Mutation p.P1356A 0.38 deleterious(0.02) possibly_damaging(0.529) TCGA-BQ-5876-01 5 35771741 35771743 GAA - SPEF2 In_Frame_Del p.E1280del 0.33 TCGA-BQ-5876-01 5 38942400 38942400 A C RICTOR 3'UTR 0.29 TCGA-BQ-5876-01 5 42801471 42801471 T G CCDC152 3'UTR 0.37 TCGA-BQ-5876-01 5 50137860 50137860 A T PARP8 Missense_Mutation p.K841N 0.40 deleterious(0.03) possibly_damaging(0.756) TCGA-BQ-5876-01 5 89989974 89989974 A T GPR98 Silent p.T2467T 0.45 TCGA-BQ-5876-01 6 152658075 152658075 C G SYNE1 Missense_Mutation p.W4143C 0.29 possibly_damaging(0.885) TCGA-BQ-5876-01 6 41739084 41739084 C T FRS3 Missense_Mutation p.R251Q 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-BQ-5876-01 6 43275360 43275360 T C CRIP3 Silent p.Q106Q 0.38 TCGA-BQ-5876-01 6 72011098 72011098 C A OGFRL1 Missense_Mutation p.H234Q 0.35 deleterious(0) probably_damaging(0.99) TCGA-BQ-5876-01 7 129987643 129987643 G T CPA5 Missense_Mutation p.K51N 0.06 tolerated(0.16) benign(0.345) TCGA-BQ-5876-01 7 143826220 143826220 G T OR2A14 Missense_Mutation p.K5N 0.44 deleterious(0) benign(0.001) TCGA-BQ-5876-01 7 5781025 5781025 A G RNF216 Missense_Mutation p.L208P 0.33 deleterious_low_confidence(0.04) probably_damaging(0.93) TCGA-BQ-5876-01 7 76241120 76241120 G C POMZP3 Missense_Mutation p.T119S 0.19 tolerated_low_confidence(0.08) probably_damaging(0.966) TCGA-BQ-5876-01 7 89866095 89866095 G T STEAP2 3'UTR 0.37 TCGA-BQ-5876-01 8 1728798 1728798 A G CLN8 3'UTR 0.36 TCGA-BQ-5876-01 8 37635734 37635734 T G PROSC 3'UTR 0.46 TCGA-BQ-5876-01 9 12821680 12821680 G T LURAP1L Missense_Mutation p.S203I 0.39 deleterious(0.01) possibly_damaging(0.554) TCGA-BQ-5876-01 9 21385064 21385067 GATT - IFNA2 Frame_Shift_Del p.N88Sfs*16 0.44 TCGA-BQ-5876-01 X 109764504 109764514 CAGCATTTGGC - TDGF1P3 RNA 0.87 TCGA-BQ-5876-01 X 119746147 119746147 A C MCTS1 3'UTR 0.47 TCGA-BQ-5876-01 X 123518587 123518587 G C TENM1 Missense_Mutation p.T2065S 0.82 deleterious(0.01) benign(0.118) TCGA-BQ-5876-01 X 70643918 70643918 T C TAF1 Splice_Site p.X1576_splice 0.76 TCGA-BQ-5877-01 10 105944865 105944865 G T WDR96 Missense_Mutation p.H684N 0.35 tolerated(0.58) benign(0.004) TCGA-BQ-5877-01 10 131755589 131755589 G - EBF3 Frame_Shift_Del p.R163Gfs*19 0.24 TCGA-BQ-5877-01 10 55626411 55626411 G A PCDH15 Silent p.A1236A 0.24 TCGA-BQ-5877-01 10 75037057 75037057 G A TTC18 Nonsense_Mutation p.Q891* 0.33 TCGA-BQ-5877-01 10 75104981 75104981 C T TTC18 Missense_Mutation p.V151I 0.31 tolerated(0.16) benign(0.117) TCGA-BQ-5877-01 10 89118099 89118099 C A NUTM2D Missense_Mutation p.S26Y 0.17 deleterious_low_confidence(0) benign(0.129) TCGA-BQ-5877-01 11 1907965 1907965 G T LSP1 Missense_Mutation p.A369S 0.41 tolerated_low_confidence(0.67) possibly_damaging(0.72) TCGA-BQ-5877-01 11 57080232 57080232 G T TNKS1BP1 Missense_Mutation p.L644M 0.29 tolerated(0.08) benign(0.146) TCGA-BQ-5877-01 11 65271312 65271314 ATA - MALAT1 RNA 0.41 TCGA-BQ-5877-01 12 131439188 131439188 G C GPR133 Missense_Mutation p.R29T 0.23 tolerated_low_confidence(0.25) benign(0.055) TCGA-BQ-5877-01 12 2760913 2760913 G T CACNA1C Missense_Mutation p.W1399C 0.28 deleterious(0) probably_damaging(0.999) TCGA-BQ-5877-01 12 53447247 53447247 G C TENC1 Intron 0.12 TCGA-BQ-5877-01 13 41556209 41556210 - GGAT ELF1 5'UTR 0.27 TCGA-BQ-5877-01 14 106321585 106321585 C T IGHM Missense_Mutation p.D217N 0.56 tolerated(0.54) benign(0.001) TCGA-BQ-5877-01 14 24040204 24040204 C G JPH4 Missense_Mutation p.G579A 0.29 tolerated(0.3) benign(0.001) TCGA-BQ-5877-01 14 24885007 24885007 C - NYNRIN Frame_Shift_Del p.Y1352Mfs*88 0.29 TCGA-BQ-5877-01 14 39868808 39868808 G A FBXO33 Missense_Mutation p.A527V 0.35 tolerated(0.09) possibly_damaging(0.874) TCGA-BQ-5877-01 14 73750966 73750966 G A NUMB Missense_Mutation p.P258S 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-BQ-5877-01 14 95660233 95660233 C G CLMN Missense_Mutation p.L931F 0.21 deleterious(0.01) possibly_damaging(0.894) TCGA-BQ-5877-01 14 96924426 96924426 A T AK7 Missense_Mutation p.I412F 0.28 deleterious(0.02) benign(0.049) TCGA-BQ-5877-01 15 42691695 42691695 C G CAPN3 Missense_Mutation p.S400C 0.34 deleterious(0) benign(0.33) TCGA-BQ-5877-01 15 45445603 45445603 G C DUOX1 Silent p.V1150V 0.35 TCGA-BQ-5877-01 15 65490142 65490142 G A CILP Silent p.L828L 0.32 TCGA-BQ-5877-01 16 21261659 21261659 G A ANKS4B Missense_Mutation p.G258S 0.19 tolerated(0.81) benign(0.001) TCGA-BQ-5877-01 16 2817459 2817459 T C SRRM2 Silent p.S2310S 0.29 TCGA-BQ-5877-01 16 3297239 3297240 - T MEFV Frame_Shift_Ins p.T455Nfs*2 0.35 TCGA-BQ-5877-01 16 51174769 51174769 G C SALL1 Missense_Mutation p.A455G 0.31 tolerated(0.19) benign(0.07) TCGA-BQ-5877-01 16 54966812 54966813 GC - IRX5 Frame_Shift_Del p.A218Rfs*4 0.29 TCGA-BQ-5877-01 16 55705980 55705980 C T SLC6A2 Silent p.T179T 0.23 TCGA-BQ-5877-01 17 10366488 10366488 G A MYH4 Nonsense_Mutation p.R275* 0.19 TCGA-BQ-5877-01 17 17106274 17106274 G A PLD6 Missense_Mutation p.T189M 0.24 tolerated(0.67) possibly_damaging(0.634) TCGA-BQ-5877-01 17 18039921 18039921 T G MYO15A Missense_Mutation p.L1567R 0.27 unknown(0) TCGA-BQ-5877-01 17 44806264 44806264 G A NSF Silent p.Q624Q 0.36 TCGA-BQ-5877-01 17 4862852 4862852 C T SPAG7 Missense_Mutation p.E221K 0.23 tolerated(0.13) benign(0.026) TCGA-BQ-5877-01 17 58348812 58348812 T G USP32 Missense_Mutation p.K201T 0.32 deleterious(0) probably_damaging(0.968) TCGA-BQ-5877-01 17 74383269 74383269 C G SPHK1 Missense_Mutation p.P339A 0.20 deleterious(0.03) benign(0.257) TCGA-BQ-5877-01 18 51025752 51025752 G T DCC Missense_Mutation p.S1328I 0.55 deleterious(0.01) possibly_damaging(0.703) TCGA-BQ-5877-01 19 10745556 10745556 G C SLC44A2 Missense_Mutation p.L316F 0.29 tolerated(0.29) possibly_damaging(0.846) TCGA-BQ-5877-01 19 11833231 11833231 G C ZNF823 Missense_Mutation p.S373W 0.31 deleterious(0) probably_damaging(0.994) TCGA-BQ-5877-01 19 15559122 15559123 - T WIZ 5'UTR 0.31 TCGA-BQ-5877-01 19 1986877 1986877 C G BTBD2 Silent p.P456P 0.18 TCGA-BQ-5877-01 19 35500801 35500802 - CA GRAMD1A Frame_Shift_Ins p.T85Pfs*65 0.27 TCGA-BQ-5877-01 19 36883897 36883897 G T ZFP82 Missense_Mutation p.P449T 0.31 deleterious(0) probably_damaging(1) TCGA-BQ-5877-01 19 50200612 50200612 C A CPT1C Silent p.A57A 0.25 TCGA-BQ-5877-01 19 52447643 52447643 T A ZNF613 Missense_Mutation p.H169Q 0.39 tolerated(0.09) benign(0.027) TCGA-BQ-5877-01 19 5668394 5668394 T C SAFB 3'Flank 0.50 TCGA-BQ-5877-01 19 59082617 59082617 A G MZF1 Missense_Mutation p.F47S 0.09 deleterious(0) probably_damaging(0.995) TCGA-BQ-5877-01 1 156628454 156628454 C A BCAN Missense_Mutation p.L853M 0.41 tolerated(0.11) possibly_damaging(0.882) TCGA-BQ-5877-01 1 15766798 15766798 T C CTRC Missense_Mutation p.S15P 0.15 tolerated(0.17) benign(0.158) TCGA-BQ-5877-01 1 186072770 186072770 A G HMCN1 Silent p.G3580G 0.24 TCGA-BQ-5877-01 1 200974516 200974517 TC - KIF21B Frame_Shift_Del p.Q217Hfs*30 0.34 TCGA-BQ-5877-01 1 228596833 228596833 G T TRIM17 Intron 0.35 TCGA-BQ-5877-01 1 231472695 231472695 T A EXOC8 Missense_Mutation p.N266I 0.41 deleterious(0.01) possibly_damaging(0.839) TCGA-BQ-5877-01 20 2775062 2775063 - A CPXM1 Frame_Shift_Ins p.Y660Lfs*31 0.34 TCGA-BQ-5877-01 20 32357951 32357951 A C ZNF341 Missense_Mutation p.E485A 0.32 deleterious(0.05) possibly_damaging(0.602) TCGA-BQ-5877-01 20 42213698 42213698 G T SGK2 3'UTR 0.44 TCGA-BQ-5877-01 22 22285579 22285579 T - PPM1F Frame_Shift_Del p.I278Ffs*9 0.36 TCGA-BQ-5877-01 22 24447376 24447376 C T CABIN1 Missense_Mutation p.A249V 0.41 deleterious(0.01) possibly_damaging(0.879) TCGA-BQ-5877-01 22 30050709 30050709 A T NF2 Nonsense_Mutation p.K171* 0.50 TCGA-BQ-5877-01 22 30394747 30394747 T A MTMR3 Intron 0.66 TCGA-BQ-5877-01 2 109392304 109392304 T C RANBP2 Silent p.I2803I 0.40 TCGA-BQ-5877-01 2 112863589 112863589 A G TMEM87B Missense_Mutation p.I487M 0.35 tolerated(1) benign(0.034) TCGA-BQ-5877-01 2 15542368 15542368 T G NBAS Missense_Mutation p.I999L 0.31 deleterious(0.05) benign(0.348) TCGA-BQ-5877-01 2 201790562 201790562 C A ORC2 Nonsense_Mutation p.E382* 0.31 TCGA-BQ-5877-01 2 27016052 27016052 T C CENPA Missense_Mutation p.Y110H 0.36 tolerated(0.06) probably_damaging(0.974) TCGA-BQ-5877-01 2 27427450 27427450 T C SLC5A6 Missense_Mutation p.Y295C 0.34 deleterious(0) probably_damaging(0.986) TCGA-BQ-5877-01 2 33036148 33036148 G A TTC27 Missense_Mutation p.V686I 0.39 tolerated(0.22) benign(0.001) TCGA-BQ-5877-01 2 39983057 39983058 - T THUMPD2 Frame_Shift_Ins p.I312Nfs*7 0.30 TCGA-BQ-5877-01 2 54125075 54125075 C G PSME4 Missense_Mutation p.V1180L 0.27 tolerated(0.28) benign(0.004) TCGA-BQ-5877-01 2 89246874 89246874 C A IGKV1-5 Missense_Mutation p.S99I 0.30 deleterious(0.01) possibly_damaging(0.551) TCGA-BQ-5877-01 3 112324460 112324460 A T CCDC80 Missense_Mutation p.M886K 0.40 deleterious(0) probably_damaging(0.992) TCGA-BQ-5877-01 3 183013205 183013205 G A MCF2L2 Nonsense_Mutation p.Q520* 0.32 TCGA-BQ-5877-01 3 184071937 184071937 C T CLCN2 Missense_Mutation p.R558Q 0.28 tolerated(1) possibly_damaging(0.768) TCGA-BQ-5877-01 3 20187858 20187858 C T KAT2B Silent p.Y685Y 0.48 TCGA-BQ-5877-01 3 47161751 47161757 GCTGTGG - SETD2 Frame_Shift_Del p.P1457Dfs*24 0.55 TCGA-BQ-5877-01 3 52439900 52439900 A G BAP1 Missense_Mutation p.I271T 0.36 deleterious(0.04) benign(0.221) TCGA-BQ-5877-01 3 86114798 86114799 - T CADM2 Frame_Shift_Ins p.I372Yfs*27 0.32 TCGA-BQ-5877-01 4 154249812 154249812 G A TRIM2 Missense_Mutation p.S718N 0.37 tolerated(0.06) possibly_damaging(0.883) TCGA-BQ-5877-01 4 187541245 187541246 TG A FAT1 Frame_Shift_Del p.S2165Lfs*11 0.29 TCGA-BQ-5877-01 5 121787084 121787084 T G SNCAIP Missense_Mutation p.S848A 0.30 tolerated(0.94) benign(0.063) TCGA-BQ-5877-01 5 150946163 150946163 G C FAT2 Missense_Mutation p.P777R 0.37 probably_damaging(0.925) TCGA-BQ-5877-01 5 172410944 172410944 C T ATP6V0E1 Silent p.F27F 0.35 TCGA-BQ-5877-01 5 71479648 71479648 C A MAP1B Missense_Mutation p.T122N 0.31 unknown(0) TCGA-BQ-5877-01 5 73165934 73165934 T A ARHGEF28 Missense_Mutation p.D822E 0.37 tolerated(0.15) benign(0.101) TCGA-BQ-5877-01 6 111213388 111213388 G A AMD1 Missense_Mutation p.R151H 0.32 tolerated(0.08) benign(0.01) TCGA-BQ-5877-01 6 136562761 136562761 C T MTFR2 Missense_Mutation p.R112Q 0.25 tolerated(1) benign(0) TCGA-BQ-5877-01 6 55142265 55142265 T C HCRTR2 Missense_Mutation p.S284P 0.35 tolerated(0.32) benign(0.003) TCGA-BQ-5877-01 6 7562980 7562980 T A DSP Nonsense_Mutation p.Y231* 0.69 TCGA-BQ-5877-01 7 48284203 48284203 G A ABCA13 Silent p.L431L 0.36 TCGA-BQ-5877-01 8 133898849 133898849 C - TG Frame_Shift_Del p.T411Rfs*68 0.32 TCGA-BQ-5877-01 8 25766046 25766046 A C EBF2 Missense_Mutation p.C193G 0.31 deleterious(0.01) probably_damaging(0.963) TCGA-BQ-5877-01 8 56015502 56015504 GTG - XKR4 In_Frame_Del p.V153del 0.33 TCGA-BQ-5877-01 9 33246702 33246702 A G SPINK4 Missense_Mutation p.E64G 0.30 deleterious(0) probably_damaging(0.974) TCGA-BQ-5878-01 10 102683799 102683799 C T FAM178A Silent p.S347S 0.43 TCGA-BQ-5878-01 10 104161522 104161522 G C NFKB2 Missense_Mutation p.D772H 0.19 deleterious(0.04) benign(0.221) TCGA-BQ-5878-01 10 22676767 22676767 G T SPAG6 Missense_Mutation p.A232S 0.34 tolerated(0.06) probably_damaging(1) TCGA-BQ-5878-01 10 23003187 23003187 G A PIP4K2A Silent p.F23F 0.41 TCGA-BQ-5878-01 10 44112496 44112496 C T ZNF485 Silent p.F335F 0.38 TCGA-BQ-5878-01 10 55583106 55583106 G C PCDH15 Silent p.L1462L 0.13 TCGA-BQ-5878-01 10 79686110 79686110 G A DLG5 Missense_Mutation p.L57F 0.40 deleterious(0) probably_damaging(0.986) TCGA-BQ-5878-01 10 79796974 79796974 A G RPS24 Missense_Mutation p.K101R 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.644) TCGA-BQ-5878-01 11 1466527 1466527 G C BRSK2 Silent p.G318G 0.27 TCGA-BQ-5878-01 11 31561263 31561263 A G ELP4 Missense_Mutation p.E105G 0.40 deleterious(0) probably_damaging(0.999) TCGA-BQ-5878-01 11 5068082 5068082 C T OR52J3 Silent p.F109F 0.14 TCGA-BQ-5878-01 11 5373545 5373545 G T OR51B6 Missense_Mutation p.V270F 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-BQ-5878-01 11 55111508 55111508 C A OR4A16 Missense_Mutation p.L278I 0.31 deleterious_low_confidence(0) benign(0.334) TCGA-BQ-5878-01 11 62458109 62458109 C T BSCL2 Silent p.E403E 0.42 TCGA-BQ-5878-01 11 73418504 73418504 A - RAB6A Frame_Shift_Del p.F152Lfs*12 0.35 TCGA-BQ-5878-01 11 8120419 8120419 C G TUB Missense_Mutation p.C426W 0.38 deleterious(0) probably_damaging(1) TCGA-BQ-5878-01 11 89224506 89224506 C T NOX4 5'UTR 0.67 TCGA-BQ-5878-01 12 10766047 10766047 G T MAGOHB Silent p.R29R 0.08 TCGA-BQ-5878-01 12 120173153 120173153 C T CIT Missense_Mutation p.D990N 0.39 deleterious(0.01) possibly_damaging(0.51) TCGA-BQ-5878-01 12 121465530 121465530 C A OASL Nonsense_Mutation p.E250* 0.37 TCGA-BQ-5878-01 12 49434210 49434210 T - KMT2D Frame_Shift_Del p.D2448Afs*37 0.33 TCGA-BQ-5878-01 12 7942255 7942255 A C NANOG Missense_Mutation p.E15D 0.15 deleterious(0) possibly_damaging(0.694) TCGA-BQ-5878-01 13 93518824 93518824 G A GPC5 3'UTR 0.48 TCGA-BQ-5878-01 14 23467861 23467861 A C C14orf93 Silent p.P124P 0.42 TCGA-BQ-5878-01 14 50605361 50605361 G A SOS2 Missense_Mutation p.P976L 0.41 deleterious(0) probably_damaging(1) TCGA-BQ-5878-01 14 76045280 76045280 C T FLVCR2 5'UTR 0.10 TCGA-BQ-5878-01 14 96917831 96917831 G A AK7 Missense_Mutation p.R341Q 0.39 tolerated(0.1) benign(0.042) TCGA-BQ-5878-01 15 32929514 32929514 C T ARHGAP11A Missense_Mutation p.S847F 0.04 deleterious(0) probably_damaging(1) TCGA-BQ-5878-01 15 67956981 67956981 G C MAP2K5 Missense_Mutation p.R282T 0.08 deleterious(0) probably_damaging(1) TCGA-BQ-5878-01 15 87217502 87217502 A G AGBL1 Splice_Site p.X974_splice 0.40 TCGA-BQ-5878-01 16 2816146 2816146 C G SRRM2 Missense_Mutation p.H1873D 0.30 unknown(0) TCGA-BQ-5878-01 16 2818196 2818196 C G SRRM2 Missense_Mutation p.S2556C 0.37 probably_damaging(0.994) TCGA-BQ-5878-01 16 48385617 48385617 T C LONP2 Silent p.F821F 0.38 TCGA-BQ-5878-01 16 72828734 72828734 C T ZFHX3 Missense_Mutation p.R2616K 0.41 unknown(0) TCGA-BQ-5878-01 16 88926369 88926369 C T TRAPPC2L Silent p.R121R 0.05 TCGA-BQ-5878-01 17 10608559 10608559 C T ADPRM Missense_Mutation p.H106Y 0.16 deleterious(0) probably_damaging(1) TCGA-BQ-5878-01 17 27430634 27430634 A T MYO18A Missense_Mutation p.C1164S 0.48 tolerated(0.4) benign(0.102) TCGA-BQ-5878-01 17 649344 649344 C G GEMIN4 Missense_Mutation p.E647Q 0.12 tolerated(0.51) benign(0.046) TCGA-BQ-5878-01 17 68129360 68129360 G A KCNJ16 Missense_Mutation p.A378T 0.51 tolerated(0.11) benign(0.065) TCGA-BQ-5878-01 17 79414059 79414059 C T RP11-1055B8.7 Intron 0.43 TCGA-BQ-5878-01 17 80525990 80525990 C T FOXK2 Silent p.G225G 0.07 TCGA-BQ-5878-01 18 28576918 28576918 T - DSC3 Frame_Shift_Del p.T778Pfs*4 0.31 TCGA-BQ-5878-01 18 29496396 29496396 C T TRAPPC8 Silent p.A152A 0.06 TCGA-BQ-5878-01 18 756694 756694 G A YES1 Missense_Mutation p.S45F 0.14 tolerated(0.87) benign(0.224) TCGA-BQ-5878-01 19 11618829 11618829 T C ECSIT Missense_Mutation p.D258G 0.33 tolerated(0.07) possibly_damaging(0.61) TCGA-BQ-5878-01 19 12875721 12875721 C T HOOK2 Silent p.R578R 0.06 TCGA-BQ-5878-01 19 1489873 1489873 A - PCSK4 Frame_Shift_Del p.H72Tfs*12 0.38 TCGA-BQ-5878-01 19 15288375 15288375 T C NOTCH3 Missense_Mutation p.N1455S 0.31 tolerated(0.19) possibly_damaging(0.803) TCGA-BQ-5878-01 19 17750273 17750273 A T UNC13A Missense_Mutation p.L973H 0.25 deleterious(0) probably_damaging(0.979) TCGA-BQ-5878-01 19 39108568 39108568 G A MAP4K1 5'Flank 0.38 TCGA-BQ-5878-01 19 41596079 41596079 C G CYP2A13 Missense_Mutation p.I157M 0.61 tolerated(0.06) possibly_damaging(0.606) TCGA-BQ-5878-01 19 46289265 46289265 G A DMWD Missense_Mutation p.P497S 0.41 tolerated(0.12) possibly_damaging(0.857) TCGA-BQ-5878-01 19 49658341 49658341 C T HRC Missense_Mutation p.E52K 0.13 deleterious(0) possibly_damaging(0.899) TCGA-BQ-5878-01 19 50862007 50862007 A - NAPSA Frame_Shift_Del p.S356Pfs*35 0.42 TCGA-BQ-5878-01 19 52272650 52272650 G C FPR2 Missense_Mutation p.V247L 0.45 deleterious(0.01) possibly_damaging(0.654) TCGA-BQ-5878-01 19 55019129 55019129 T A LAIR2 Missense_Mutation p.S32T 0.34 tolerated(0.17) benign(0.386) TCGA-BQ-5878-01 19 5978102 5978102 C T RANBP3 5'UTR 0.10 TCGA-BQ-5878-01 19 9087506 9087506 C T MUC16 Missense_Mutation p.D1437N 0.08 unknown(0) TCGA-BQ-5878-01 1 11562884 11562884 G T PTCHD2 Nonsense_Mutation p.E416* 0.10 TCGA-BQ-5878-01 1 116202267 116202267 G C VANGL1 Missense_Mutation p.R26T 0.04 deleterious(0.02) possibly_damaging(0.784) TCGA-BQ-5878-01 1 156849153 156849153 G A NTRK1 Missense_Mutation p.R682H 0.52 deleterious(0) probably_damaging(0.984) TCGA-BQ-5878-01 1 193074704 193074704 G A GLRX2 Missense_Mutation p.A22V 0.44 tolerated_low_confidence(0.13) benign(0.311) TCGA-BQ-5878-01 1 198266319 198266319 G C NEK7 Missense_Mutation p.K249N 0.45 tolerated(0.06) possibly_damaging(0.629) TCGA-BQ-5878-01 1 27057775 27057775 C T ARID1A Missense_Mutation p.H495Y 0.14 benign(0) TCGA-BQ-5878-01 1 46662703 46662704 GA - POMGNT1 Frame_Shift_Del p.I58Tfs*9 0.38 TCGA-BQ-5878-01 1 55272686 55272686 T C C1orf177 Missense_Mutation p.V41A 0.41 tolerated(0.11) benign(0.159) TCGA-BQ-5878-01 1 6204188 6204188 G A CHD5 Silent p.Y610Y 0.51 TCGA-BQ-5878-01 1 62672679 62672679 G C L1TD1 Missense_Mutation p.G127R 0.45 tolerated(0.31) unknown(0) TCGA-BQ-5878-01 20 33762617 33762617 A T PROCR Silent p.P61P 0.38 TCGA-BQ-5878-01 20 45204227 45204227 C A SLC13A3 Missense_Mutation p.M439I 0.47 deleterious(0) benign(0.199) TCGA-BQ-5878-01 20 57766279 57766279 G A ZNF831 Missense_Mutation p.G69R 0.43 deleterious(0) probably_damaging(0.999) TCGA-BQ-5878-01 21 15554081 15554081 T C LIPI Missense_Mutation p.N235S 0.47 deleterious(0.01) benign(0.049) TCGA-BQ-5878-01 22 32301997 32301997 T G DEPDC5 Silent p.S1479S 0.53 TCGA-BQ-5878-01 22 50719301 50719302 - T PLXNB2 Frame_Shift_Ins p.S1289Ifs*18 0.31 TCGA-BQ-5878-01 2 179401833 179401833 C T TTN Missense_Mutation p.E33335K 0.21 TCGA-BQ-5878-01 2 179452053 179452053 C T TTN Silent p.G21295G 0.06 TCGA-BQ-5878-01 2 179458757 179458757 C T TTN Missense_Mutation p.G19455S 0.15 TCGA-BQ-5878-01 2 207833968 207833968 G C CPO Silent p.L311L 0.43 TCGA-BQ-5878-01 2 20871056 20871056 C T GDF7 Silent p.D408D 0.69 TCGA-BQ-5878-01 2 215840568 215840568 A G ABCA12 Silent p.Y1774Y 0.36 TCGA-BQ-5878-01 2 79364431 79364431 G A REG1P RNA 0.14 TCGA-BQ-5878-01 3 129247565 129247565 A G RHO 5'UTR 0.42 TCGA-BQ-5878-01 3 183960275 183960275 T A ALG3 3'UTR 0.43 TCGA-BQ-5878-01 3 33135655 33135655 C T TMPPE Silent p.A11A 0.07 TCGA-BQ-5878-01 3 41274905 41274905 C T CTNNB1 Silent p.L385L 0.38 TCGA-BQ-5878-01 3 51697406 51697406 C T RAD54L2 Silent p.D1458D 0.44 TCGA-BQ-5878-01 3 69101211 69101211 G A TMF1 Silent p.L9L 0.41 TCGA-BQ-5878-01 4 151827110 151827110 A T LRBA Silent p.L545L 0.45 TCGA-BQ-5878-01 4 156763435 156763435 G A ASIC5 Silent p.S311S 0.56 TCGA-BQ-5878-01 4 156763436 156763436 C T ASIC5 Missense_Mutation p.S311N 0.57 deleterious(0.04) benign(0.35) TCGA-BQ-5878-01 4 174254775 174254775 G A HMGB2 Missense_Mutation p.P9L 0.50 tolerated(0.14) benign(0.404) TCGA-BQ-5878-01 4 183664509 183664515 GCGATTT - TENM3 Frame_Shift_Del p.G1189Afs*13 0.31 TCGA-BQ-5878-01 4 86950416 86950416 T C MAPK10 Missense_Mutation p.K396E 0.52 tolerated(0.21) benign(0.001) TCGA-BQ-5878-01 5 136328174 136328174 G A SPOCK1 Silent p.G235G 0.39 TCGA-BQ-5878-01 5 137715373 137715373 T C KDM3B Silent p.R227R 0.34 TCGA-BQ-5878-01 5 138715041 138715067 GACCTGTGCTCGGAGGGAGACAGGATG - SLC23A1 Splice_Site p.X313_splice 0.57 TCGA-BQ-5878-01 5 139197069 139197069 C T PSD2 Silent p.N340N 0.35 TCGA-BQ-5878-01 5 140625417 140625417 G C PCDHB15 Missense_Mutation p.D91H 0.08 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-BQ-5878-01 5 149240372 149240372 T G PDE6A 3'UTR 0.39 TCGA-BQ-5878-01 5 150892049 150892049 T C FAT2 Missense_Mutation p.D3861G 0.05 benign(0) TCGA-BQ-5878-01 5 172396527 172396527 G A RPL26L1 Missense_Mutation p.E141K 0.08 tolerated(0.06) benign(0.039) TCGA-BQ-5878-01 5 33984558 33984558 C T SLC45A2 Missense_Mutation p.G44E 0.36 deleterious(0) probably_damaging(1) TCGA-BQ-5878-01 5 35070231 35070231 G C PRLR Missense_Mutation p.P227R 0.39 deleterious(0) probably_damaging(0.956) TCGA-BQ-5878-01 5 42801313 42801313 C G SEPP1 Missense_Mutation p.G219R 0.41 tolerated(0.08) probably_damaging(0.988) TCGA-BQ-5878-01 5 446365 446365 G A EXOC3 Silent p.R15R 0.43 TCGA-BQ-5878-01 6 106968949 106968949 A T AIM1 Missense_Mutation p.E881V 0.45 tolerated(0.06) possibly_damaging(0.611) TCGA-BQ-5878-01 6 112457351 112457351 G A LAMA4 Nonsense_Mutation p.Q1130* 0.05 TCGA-BQ-5878-01 6 132271489 132271489 C T CTGF Missense_Mutation p.E162K 0.41 deleterious(0) possibly_damaging(0.844) TCGA-BQ-5878-01 6 148808752 148808752 C G SASH1 Silent p.L210L 0.35 TCGA-BQ-5878-01 6 166571789 166571789 T C T 3'UTR 0.33 TCGA-BQ-5878-01 6 34210572 34210572 G A HMGA1 Silent p.R73R 0.20 TCGA-BQ-5878-01 6 43320114 43320114 C - ZNF318 Splice_Site p.X924_splice 0.34 TCGA-BQ-5878-01 6 55223928 55223928 C T GFRAL Missense_Mutation p.S315L 0.12 deleterious(0) probably_damaging(0.997) TCGA-BQ-5878-01 6 6196094 6196094 G A F13A1 Missense_Mutation p.S414L 0.26 deleterious(0) probably_damaging(1) TCGA-BQ-5878-01 7 47440438 47440438 G A TNS3 Missense_Mutation p.A266V 0.41 deleterious(0) probably_damaging(0.96) TCGA-BQ-5878-01 7 5352384 5352384 G A TNRC18 Missense_Mutation p.S2713L 0.20 unknown(0) TCGA-BQ-5878-01 7 72412723 72412723 A G POM121 Missense_Mutation p.I466V 0.36 tolerated(0.09) benign(0.138) TCGA-BQ-5878-01 7 94915545 94915545 C A PPP1R9A Missense_Mutation p.P1213T 0.34 deleterious(0.04) probably_damaging(0.959) TCGA-BQ-5878-01 7 97823560 97823560 C T LMTK2 Silent p.I1261I 0.42 TCGA-BQ-5878-01 8 11188670 11188670 C T SLC35G5 Missense_Mutation p.P19S 0.40 tolerated(0.08) benign(0.009) TCGA-BQ-5878-01 8 41577342 41577342 C T ANK1 Missense_Mutation p.G348E 0.39 deleterious(0.02) probably_damaging(1) TCGA-BQ-5878-01 8 59477584 59477584 C T SDCBP 5'UTR 0.54 TCGA-BQ-5878-01 9 138415819 138415819 G A LCN1 Missense_Mutation p.R129Q 0.07 tolerated(0.15) benign(0.024) TCGA-BQ-5878-01 9 91083448 91083448 G C SPIN1 Missense_Mutation p.D173H 0.07 deleterious(0) probably_damaging(0.971) TCGA-BQ-5878-01 X 103499100 103499100 C T ESX1 Missense_Mutation p.E81K 0.13 tolerated(0.24) benign(0.038) TCGA-BQ-5878-01 X 132091225 132091225 G C HS6ST2 Missense_Mutation p.F186L 0.07 tolerated_low_confidence(0.12) benign(0.008) TCGA-BQ-5878-01 X 154130375 154130375 G T F8 Silent p.G2022G 0.51 TCGA-BQ-5878-01 X 48979068 48979068 G A GPKOW Missense_Mutation p.R79C 0.47 tolerated(0.18) possibly_damaging(0.696) TCGA-BQ-5878-01 X 99891692 99891692 G A TSPAN6 5'UTR 0.29 TCGA-BQ-5879-01 10 17401582 17401582 T A ST8SIA6 Missense_Mutation p.Y103F 0.08 deleterious(0.04) benign(0.038) TCGA-BQ-5879-01 12 45097517 45097517 T C NELL2 Missense_Mutation p.Y487C 0.32 tolerated(0.07) probably_damaging(0.935) TCGA-BQ-5879-01 14 74196477 74196477 T C ELMSAN1 Missense_Mutation p.Y654C 0.30 deleterious(0) probably_damaging(0.999) TCGA-BQ-5879-01 15 33905537 33905537 G T RYR3 Missense_Mutation p.G773V 0.54 probably_damaging(0.993) TCGA-BQ-5879-01 16 70595650 70595650 C T SF3B3 Missense_Mutation p.P751S 0.39 tolerated(0.08) benign(0.057) TCGA-BQ-5879-01 17 10554908 10554908 G A MYH3 Silent p.G142G 0.30 TCGA-BQ-5879-01 17 5314095 5314095 C T NUP88 Missense_Mutation p.R203H 0.36 tolerated(0.17) benign(0.003) TCGA-BQ-5879-01 17 61628109 61628109 G T DCAF7 Missense_Mutation p.W24L 0.07 tolerated(0.15) benign(0) TCGA-BQ-5879-01 17 61995168 61995168 G T GH1 Silent p.V136V 0.44 TCGA-BQ-5879-01 19 34710448 34710449 AG - LSM14A Frame_Shift_Del p.E313Vfs*3 0.30 TCGA-BQ-5879-01 19 38948197 38948197 G T RYR1 Missense_Mutation p.D618Y 0.03 probably_damaging(0.926) TCGA-BQ-5879-01 19 52091521 52091521 T C ZNF175 Missense_Mutation p.L646P 0.32 deleterious(0.02) benign(0.001) TCGA-BQ-5879-01 19 54705015 54705015 C G RPS9 Intron 0.40 TCGA-BQ-5879-01 1 156105085 156105085 C T LMNA Silent p.L306L 0.35 TCGA-BQ-5879-01 1 17083706 17083706 C T MST1L RNA 0.14 TCGA-BQ-5879-01 1 79386001 79386001 G A ELTD1 Missense_Mutation p.A443V 0.28 tolerated(0.08) benign(0.426) TCGA-BQ-5879-01 20 2998529 2998529 C T PTPRA Silent p.V337V 0.48 TCGA-BQ-5879-01 2 135815628 135815628 G A RAB3GAP1 Missense_Mutation p.G41E 0.35 tolerated(0.05) benign(0.066) TCGA-BQ-5879-01 2 179429062 179429062 G T TTN Missense_Mutation p.A27266E 0.22 TCGA-BQ-5879-01 2 27427384 27427384 G A SLC5A6 Missense_Mutation p.A317V 0.31 tolerated(0.1) possibly_damaging(0.449) TCGA-BQ-5879-01 2 89986908 89986908 G A IGKV2D-29 Silent p.Q63Q 0.20 TCGA-BQ-5879-01 2 98275011 98275014 GAGT - ACTR1B Frame_Shift_Del p.H178Pfs*140 0.20 TCGA-BQ-5879-01 3 148916162 148916162 C A CP Missense_Mutation p.G569W 0.16 deleterious(0.01) probably_damaging(1) TCGA-BQ-5879-01 5 1094290 1094290 C T SLC12A7 Silent p.G66G 0.54 TCGA-BQ-5879-01 5 136314458 136314458 C T SPOCK1 Missense_Mutation p.R402Q 0.60 tolerated_low_confidence(0.61) benign(0) TCGA-BQ-5879-01 5 56189549 56189549 C G MAP3K1 3'UTR 0.38 TCGA-BQ-5879-01 8 99142345 99142345 C T POP1 Missense_Mutation p.A209V 0.42 deleterious(0) probably_damaging(1) TCGA-BQ-5879-01 X 109694572 109694572 T C RGAG1 Missense_Mutation p.S243P 0.31 deleterious(0) probably_damaging(0.999) TCGA-BQ-5879-01 X 132160221 132160221 A C USP26 Silent p.P676P 0.21 TCGA-BQ-5879-01 X 48123289 48123289 G A SSX1 Missense_Mutation p.D135N 0.06 tolerated(0.43) benign(0.04) TCGA-BQ-5880-01 10 124793900 124793900 C T ACADSB Missense_Mutation p.S24F 0.20 deleterious(0) benign(0.211) TCGA-BQ-5880-01 10 16918967 16918967 G A CUBN Missense_Mutation p.P3012L 0.16 deleterious(0) possibly_damaging(0.856) TCGA-BQ-5880-01 11 118971040 118971040 C T DPAGT1 Missense_Mutation p.G192D 0.17 deleterious(0) probably_damaging(1) TCGA-BQ-5880-01 11 27390335 27390336 - A LGR4 Frame_Shift_Ins p.L645Ffs*40 0.19 TCGA-BQ-5880-01 11 55904466 55904466 C T OR8J3 Silent p.S243S 0.22 TCGA-BQ-5880-01 12 108589975 108589975 G C WSCD2 Missense_Mutation p.E122D 0.38 tolerated(0.38) benign(0.006) TCGA-BQ-5880-01 12 49443557 49443558 AT - KMT2D Frame_Shift_Del p.L1272Vfs*13 0.13 TCGA-BQ-5880-01 12 56346149 56346149 C G DGKA Missense_Mutation p.F559L 0.33 tolerated(0.17) benign(0.116) TCGA-BQ-5880-01 13 46549686 46549686 C A ZC3H13 Missense_Mutation p.D734Y 0.19 unknown(0) TCGA-BQ-5880-01 14 50089217 50089220 CTAA - MGAT2 Frame_Shift_Del p.T412Sfs*8 0.10 TCGA-BQ-5880-01 14 68157017 68157017 G A RDH11 Silent p.G192G 0.30 TCGA-BQ-5880-01 15 22929873 22929873 A - CYFIP1 Frame_Shift_Del p.N183Tfs*48 0.09 TCGA-BQ-5880-01 15 56387238 56387238 C G RFX7 Missense_Mutation p.Q896H 0.18 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-BQ-5880-01 17 40456566 40456591 CGTGCTGACCGGCGGGGTGCAGAGTC - STAT5A Frame_Shift_Del p.A427Dfs*10 0.27 TCGA-BQ-5880-01 17 80041413 80041413 A C FASN Missense_Mutation p.L1774R 0.10 deleterious(0) probably_damaging(1) TCGA-BQ-5880-01 18 22806306 22806306 A C ZNF521 Missense_Mutation p.S526A 0.24 tolerated(0.39) benign(0.017) TCGA-BQ-5880-01 18 7025998 7025998 A G LAMA1 Silent p.P794P 0.21 TCGA-BQ-5880-01 18 74622686 74622686 C T ZNF236 Silent p.S906S 0.22 TCGA-BQ-5880-01 19 17311587 17311587 G T MYO9B Missense_Mutation p.Q1504H 0.25 deleterious(0.04) benign(0.212) TCGA-BQ-5880-01 19 9524367 9524367 T G ZNF266 Missense_Mutation p.K412Q 0.29 tolerated(0.21) benign(0.055) TCGA-BQ-5880-01 19 9721627 9721627 G A ZNF561 Missense_Mutation p.S237F 0.21 deleterious(0) probably_damaging(0.996) TCGA-BQ-5880-01 1 107937850 107937850 C A NTNG1 Missense_Mutation p.T321N 0.17 deleterious(0) probably_damaging(0.981) TCGA-BQ-5880-01 1 117131439 117131439 C T IGSF3 Missense_Mutation p.E793K 0.21 tolerated(0.07) benign(0.028) TCGA-BQ-5880-01 1 169677647 169677647 C T SELL Missense_Mutation p.C141Y 0.29 deleterious(0) probably_damaging(1) TCGA-BQ-5880-01 1 27106982 27106982 T C ARID1A Missense_Mutation p.F2198S 0.13 probably_damaging(0.998) TCGA-BQ-5880-01 1 39775962 39775962 C A MACF1 Missense_Mutation p.L993I 0.20 probably_damaging(0.998) TCGA-BQ-5880-01 1 41976755 41976755 G C HIVEP3 Silent p.P2196P 0.17 TCGA-BQ-5880-01 20 36612011 36612011 T A TTI1 Silent p.P1039P 0.11 TCGA-BQ-5880-01 20 47271873 47271873 G A PREX1 Nonsense_Mutation p.Q722* 0.21 TCGA-BQ-5880-01 21 43505425 43505425 C T UMODL1 Missense_Mutation p.S169F 0.17 tolerated(0.72) possibly_damaging(0.715) TCGA-BQ-5880-01 22 26400727 26400727 C T MYO18B Nonsense_Mutation p.Q2126* 0.13 TCGA-BQ-5880-01 22 40814880 40814880 C T MKL1 Missense_Mutation p.R521H 0.22 tolerated(0.15) probably_damaging(0.984) TCGA-BQ-5880-01 2 111399713 111399713 G A BUB1 Nonsense_Mutation p.Q816* 0.12 TCGA-BQ-5880-01 2 138208579 138208579 G T THSD7B Missense_Mutation p.D1042Y 0.22 deleterious(0) unknown(0) TCGA-BQ-5880-01 2 27459639 27459639 C A CAD Missense_Mutation p.A1446D 0.22 tolerated(0.52) benign(0.197) TCGA-BQ-5880-01 2 63280064 63280064 C A OTX1 5'UTR 0.06 TCGA-BQ-5880-01 2 98744846 98744846 G T VWA3B Missense_Mutation p.D283Y 0.20 deleterious(0) probably_damaging(0.964) TCGA-BQ-5880-01 3 38167081 38167092 TGAGCAGCGTGA - ACAA1 In_Frame_Del p.I388_L391del 0.15 TCGA-BQ-5880-01 3 52398951 52398951 A G DNAH1 Missense_Mutation p.I1812V 0.31 benign(0.001) TCGA-BQ-5880-01 3 57898917 57898917 G T SLMAP Missense_Mutation p.A651S 0.18 tolerated_low_confidence(0.88) benign(0.002) TCGA-BQ-5880-01 3 72957696 72957696 G A GXYLT2 Missense_Mutation p.E152K 0.22 tolerated(0.28) possibly_damaging(0.484) TCGA-BQ-5880-01 3 81698998 81698998 A - GBE1 Frame_Shift_Del p.D169Ifs*3 0.16 TCGA-BQ-5880-01 4 47901107 47901107 G A NFXL1 Missense_Mutation p.T286I 0.18 deleterious(0.03) benign(0.439) TCGA-BQ-5880-01 4 72429512 72429512 T A SLC4A4 Intron 0.17 TCGA-BQ-5880-01 5 134785073 134785073 A T TIFAB 3'UTR 0.29 TCGA-BQ-5880-01 5 139193812 139193812 G - PSD2 Frame_Shift_Del p.L295Wfs*65 0.15 TCGA-BQ-5880-01 6 35949921 35949921 C T SLC26A8 Silent p.T334T 0.16 TCGA-BQ-5880-01 7 101943829 101943829 G A SH2B2 Missense_Mutation p.E42K 0.23 tolerated_low_confidence(1) benign(0.009) TCGA-BQ-5880-01 7 134133231 134133231 T C AKR1B1 Silent p.P189P 0.19 TCGA-BQ-5880-01 7 21468915 21468915 G A SP4 Silent p.Q44Q 0.12 TCGA-BQ-5880-01 7 5104736 5104736 A T RBAK Missense_Mutation p.E550V 0.30 deleterious(0.01) possibly_damaging(0.681) TCGA-BQ-5880-01 7 92932848 92932848 A G CCDC132 Missense_Mutation p.I480V 0.19 tolerated(0.36) benign(0.085) TCGA-BQ-5880-01 7 99779767 99779767 T - STAG3 Frame_Shift_Del p.R58Afs*3 0.18 TCGA-BQ-5880-01 8 69046477 69046477 T C PREX2 Missense_Mutation p.L1317P 0.05 deleterious(0) possibly_damaging(0.641) TCGA-BQ-5880-01 9 127620113 127620113 G C WDR38 3'UTR 0.21 TCGA-BQ-5880-01 9 134020018 134020018 G T NUP214 Missense_Mutation p.G549V 0.23 probably_damaging(0.979) TCGA-BQ-5880-01 9 33900238 33900238 T A UBE2R2 Missense_Mutation p.S111T 0.23 deleterious(0.05) probably_damaging(0.966) TCGA-BQ-5880-01 9 35751270 35751270 G A RGP1 Silent p.Q165Q 0.22 TCGA-BQ-5880-01 X 43702915 43702915 C G MAOB Splice_Site p.X47_splice 0.52 TCGA-BQ-5880-01 X 53407985 53407985 A T SMC1A Missense_Mutation p.V1154D 0.41 deleterious(0) probably_damaging(0.999) TCGA-BQ-5881-01 11 113628545 113628545 G A ZW10 Missense_Mutation p.P255L 0.28 deleterious(0.01) possibly_damaging(0.554) TCGA-BQ-5881-01 11 62417117 62417117 A G INTS5 Silent p.S145S 0.38 TCGA-BQ-5881-01 11 72423355 72423355 A G ARAP1 Missense_Mutation p.L303S 0.24 tolerated(0.41) benign(0) TCGA-BQ-5881-01 13 102235670 102235670 G C ITGBL1 Missense_Mutation p.A278P 0.33 deleterious_low_confidence(0.02) benign(0.032) TCGA-BQ-5881-01 13 21732196 21732196 A G SKA3 Silent p.T328T 0.23 TCGA-BQ-5881-01 14 33204952 33204952 T A AKAP6 Missense_Mutation p.L1079Q 0.34 deleterious(0) probably_damaging(0.994) TCGA-BQ-5881-01 14 59791109 59791109 T A DAAM1 Missense_Mutation p.L309Q 0.30 deleterious(0) unknown(0) TCGA-BQ-5881-01 15 42005411 42005411 T A MGA Missense_Mutation p.N1049K 0.29 tolerated(0.11) possibly_damaging(0.764) TCGA-BQ-5881-01 15 62167108 62167108 T A VPS13C Missense_Mutation p.I3461F 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-BQ-5881-01 16 57181631 57181631 C G CPNE2 3'UTR 0.31 TCGA-BQ-5881-01 17 19451346 19451346 A G SLC47A1 Missense_Mutation p.S119G 0.54 tolerated(1) benign(0.002) TCGA-BQ-5881-01 17 48546019 48546019 C A CHAD Missense_Mutation p.K52N 0.20 tolerated(0.29) benign(0.053) TCGA-BQ-5881-01 17 7578190 7578190 T G TP53 Missense_Mutation p.Y220S 0.14 deleterious(0) probably_damaging(1) TCGA-BQ-5881-01 19 9452840 9452840 A - ZNF559 Frame_Shift_Del p.K239Nfs*22 0.29 TCGA-BQ-5881-01 1 109839700 109839700 G C MYBPHL Missense_Mutation p.T181R 0.33 deleterious(0.02) possibly_damaging(0.876) TCGA-BQ-5881-01 1 156236156 156236156 T C SMG5 Missense_Mutation p.K424R 0.36 tolerated(0.7) benign(0.002) TCGA-BQ-5881-01 1 6399500 6399500 G T ACOT7 Silent p.I147I 0.24 TCGA-BQ-5881-01 1 85124036 85124036 A T SSX2IP Missense_Mutation p.I348N 0.28 tolerated(0.13) possibly_damaging(0.883) TCGA-BQ-5881-01 20 43940944 43940944 C T RBPJL Silent p.R176R 0.33 TCGA-BQ-5881-01 22 22327036 22327036 G T TOP3B Missense_Mutation p.P86H 0.42 deleterious(0) possibly_damaging(0.564) TCGA-BQ-5881-01 22 24483456 24483456 C A CABIN1 Missense_Mutation p.D1105E 0.22 tolerated(0.2) probably_damaging(0.99) TCGA-BQ-5881-01 2 178098956 178098956 A C NFE2L2 Missense_Mutation p.L30R 0.10 deleterious(0) probably_damaging(1) TCGA-BQ-5881-01 2 178301498 178301498 T G AGPS Missense_Mutation p.L150V 0.07 tolerated(0.39) benign(0.004) TCGA-BQ-5881-01 2 182786760 182786760 G C SSFA2 Missense_Mutation p.G1099A 0.23 tolerated(0.51) benign(0.133) TCGA-BQ-5881-01 2 220072989 220072989 T G ZFAND2B Missense_Mutation p.I149S 0.37 deleterious(0) benign(0.046) TCGA-BQ-5881-01 2 234637943 234637943 G A UGT1A3 Silent p.Q57Q 0.28 TCGA-BQ-5881-01 2 239344354 239344354 G A ASB1 Missense_Mutation p.R65H 0.09 tolerated(0.54) probably_damaging(0.986) TCGA-BQ-5881-01 2 25387619 25387619 C T POMC Missense_Mutation p.R8H 0.28 tolerated(0.39) benign(0.011) TCGA-BQ-5881-01 2 32656054 32656054 A C BIRC6 Missense_Mutation p.E1048D 0.32 probably_damaging(0.97) TCGA-BQ-5881-01 3 122102042 122102042 A G CCDC58 Silent p.C10C 0.12 TCGA-BQ-5881-01 3 138409857 138409857 A G PIK3CB Missense_Mutation p.L674P 0.23 deleterious(0) probably_damaging(1) TCGA-BQ-5881-01 3 25651158 25651158 A C TOP2B Missense_Mutation p.F1273V 0.25 tolerated(0.35) benign(0) TCGA-BQ-5881-01 3 44438258 44438258 C T TCAIM Missense_Mutation p.R273C 0.43 tolerated(0.18) benign(0.01) TCGA-BQ-5881-01 4 619837 619837 A C PDE6B Missense_Mutation p.H141P 0.50 tolerated(0.12) probably_damaging(0.936) TCGA-BQ-5881-01 6 28543371 28543371 C A SCAND3 Missense_Mutation p.V371F 0.30 tolerated_low_confidence(0.27) possibly_damaging(0.621) TCGA-BQ-5881-01 6 31655645 31655646 - G ABHD16A Frame_Shift_Ins p.R468Pfs*20 0.19 TCGA-BQ-5881-01 7 102769233 102769233 T C NAPEPLD 5'UTR 0.41 TCGA-BQ-5881-01 7 102952636 102952636 C T PMPCB Intron 0.25 TCGA-BQ-5881-01 7 121668665 121668665 C A PTPRZ1 Missense_Mutation p.S1683Y 0.06 deleterious(0) benign(0.396) TCGA-BQ-5881-01 7 1535858 1535858 T C INTS1 Missense_Mutation p.M549V 0.24 tolerated(0.17) benign(0.118) TCGA-BQ-5881-01 8 125074167 125074167 T A FER1L6 Missense_Mutation p.S1074R 0.31 tolerated(0.28) probably_damaging(1) TCGA-BQ-5881-01 8 48308957 48308957 G C SPIDR Missense_Mutation p.E183Q 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-BQ-5881-01 X 23019108 23019108 G A DDX53 Missense_Mutation p.V312M 0.56 deleterious(0) probably_damaging(0.999) TCGA-BQ-5882-01 10 24508666 24508666 G T KIAA1217 Missense_Mutation p.R61L 0.23 deleterious(0) possibly_damaging(0.764) TCGA-BQ-5882-01 10 32580239 32580239 C G EPC1 Missense_Mutation p.G276A 0.16 tolerated(0.36) benign(0.032) TCGA-BQ-5882-01 10 6157412 6157414 TCA - RBM17 Splice_Site p.X368_splice 0.51 TCGA-BQ-5882-01 11 3141834 3141834 G C OSBPL5 Missense_Mutation p.S141R 0.56 deleterious(0.03) benign(0.285) TCGA-BQ-5882-01 11 55890629 55890629 A G OR8H3 Missense_Mutation p.K261E 0.48 deleterious(0.01) probably_damaging(0.938) TCGA-BQ-5882-01 11 66384144 66384144 G C RBM14-RBM4 5'UTR 0.53 TCGA-BQ-5882-01 12 111947692 111947692 A T ATXN2 Intron 0.33 TCGA-BQ-5882-01 12 120582190 120582190 G T GCN1L1 Silent p.I1805I 0.27 TCGA-BQ-5882-01 12 25702289 25702289 C A IFLTD1 Missense_Mutation p.G94V 0.28 tolerated(0.36) benign(0.007) TCGA-BQ-5882-01 12 38714192 38714192 T C ALG10B Missense_Mutation p.V200A 0.32 tolerated(0.13) benign(0.039) TCGA-BQ-5882-01 13 39596542 39596542 A T PROSER1 Nonsense_Mutation p.Y217* 0.48 TCGA-BQ-5882-01 14 101348358 101348358 T - RTL1 Frame_Shift_Del p.K923Rfs*24 0.24 TCGA-BQ-5882-01 14 51475908 51475908 T C TRIM9 Missense_Mutation p.Q399R 0.33 deleterious(0.04) benign(0.122) TCGA-BQ-5882-01 15 50835960 50835960 G A USP50 Silent p.A93A 0.20 TCGA-BQ-5882-01 15 64463956 64463956 C A CSNK1G1 3'UTR 0.33 TCGA-BQ-5882-01 15 79064138 79064138 G A ADAMTS7 Missense_Mutation p.A722V 0.51 deleterious(0) probably_damaging(1) TCGA-BQ-5882-01 16 23540828 23540828 C T EARS2 Silent p.V449V 0.28 TCGA-BQ-5882-01 16 31089679 31089679 T C ZNF646 Silent p.A678A 0.35 TCGA-BQ-5882-01 16 88765421 88765421 C A RNF166 Silent p.V166V 0.50 TCGA-BQ-5882-01 17 37579984 37579984 A T MED1 Silent p.S314S 0.41 TCGA-BQ-5882-01 17 73837041 73837041 A T UNC13D Missense_Mutation p.M204K 0.31 deleterious(0) possibly_damaging(0.68) TCGA-BQ-5882-01 17 74288035 74288035 G A QRICH2 Nonsense_Mutation p.Q759* 0.35 TCGA-BQ-5882-01 18 23865865 23865865 G A TAF4B Missense_Mutation p.R331Q 0.52 deleterious(0) probably_damaging(1) TCGA-BQ-5882-01 19 36357565 36357565 G A KIRREL2 3'UTR 0.25 TCGA-BQ-5882-01 19 38190209 38190209 G T ZNF607 Missense_Mutation p.H275N 0.40 deleterious(0.01) probably_damaging(1) TCGA-BQ-5882-01 19 38621370 38621370 A C SIPA1L3 Missense_Mutation p.K1034T 0.29 deleterious(0.02) possibly_damaging(0.78) TCGA-BQ-5882-01 19 40540344 40540344 G A ZNF780B Missense_Mutation p.P808S 0.39 deleterious(0.03) benign(0) TCGA-BQ-5882-01 19 45495628 45495628 G A CLPTM1 Missense_Mutation p.V565I 0.40 tolerated(0.15) benign(0.048) TCGA-BQ-5882-01 19 55493701 55493701 A T NLRP2 Missense_Mutation p.Y212F 0.39 deleterious(0.01) benign(0.295) TCGA-BQ-5882-01 19 814747 814747 T C LPPR3 Missense_Mutation p.K201R 0.34 tolerated(0.08) probably_damaging(0.969) TCGA-BQ-5882-01 1 155695186 155695186 G AA DAP3 Frame_Shift_Ins p.S95Kfs*2 0.29 TCGA-BQ-5882-01 1 168168189 168168189 G A TIPRL Silent p.T215T 0.20 TCGA-BQ-5882-01 1 205312513 205312513 C T KLHDC8A Missense_Mutation p.V74I 0.31 tolerated(0.09) benign(0.036) TCGA-BQ-5882-01 1 33099257 33099257 A C ZBTB8OS Missense_Mutation p.F118V 0.59 deleterious(0.03) probably_damaging(0.995) TCGA-BQ-5882-01 1 40701983 40701983 G A RLF Missense_Mutation p.D537N 0.31 tolerated(0.15) benign(0.199) TCGA-BQ-5882-01 1 45120714 45120714 G T TMEM53 Silent p.V117V 0.56 TCGA-BQ-5882-01 20 10394202 10394202 T C MKKS 5'UTR 0.38 TCGA-BQ-5882-01 21 41301052 41301052 C A PCP4 3'UTR 0.29 TCGA-BQ-5882-01 22 39714484 39714484 C A RPL3 Missense_Mutation p.K39N 0.24 deleterious(0.02) benign(0.025) TCGA-BQ-5882-01 22 44107398 44107399 - A EFCAB6 Frame_Shift_Ins p.V330Cfs*19 0.25 TCGA-BQ-5882-01 2 128918714 128918714 C A UGGT1 Silent p.I899I 0.31 TCGA-BQ-5882-01 2 135206357 135206357 G A MGAT5 Missense_Mutation p.R722K 0.34 deleterious(0) probably_damaging(0.962) TCGA-BQ-5882-01 2 153471511 153471511 T A FMNL2 Silent p.S403S 0.34 TCGA-BQ-5882-01 2 157367411 157367411 C T GPD2 Silent p.I126I 0.28 TCGA-BQ-5882-01 2 179575504 179575504 G A TTN Silent p.G9440G 0.30 TCGA-BQ-5882-01 2 211081192 211081192 C T ACADL Missense_Mutation p.G139S 0.40 deleterious(0.02) benign(0.155) TCGA-BQ-5882-01 2 234363455 234363455 G T DGKD Missense_Mutation p.G771C 0.26 deleterious(0) probably_damaging(1) TCGA-BQ-5882-01 2 26534291 26534291 C A GPR113 Missense_Mutation p.A769S 0.06 tolerated(0.26) benign(0.083) TCGA-BQ-5882-01 2 37267620 37267620 A T HEATR5B Missense_Mutation p.S966R 0.31 deleterious(0.03) benign(0.18) TCGA-BQ-5882-01 3 134670526 134670526 T A EPHB1 Missense_Mutation p.F146Y 0.50 deleterious(0) probably_damaging(0.996) TCGA-BQ-5882-01 3 142775322 142775322 G T U2SURP 3'UTR 0.31 TCGA-BQ-5882-01 3 151078359 151078359 A G MED12L Missense_Mutation p.S940G 0.52 tolerated(0.09) benign(0.097) TCGA-BQ-5882-01 3 18391172 18391172 T A SATB1 Missense_Mutation p.Q626H 0.36 tolerated(0.12) benign(0.028) TCGA-BQ-5882-01 3 42793437 42793438 - TC CCDC13 Frame_Shift_Ins p.D198Efs*11 0.38 TCGA-BQ-5882-01 3 49314321 49314321 C T C3orf62 5'UTR 0.46 TCGA-BQ-5882-01 3 52544437 52544437 G A STAB1 Missense_Mutation p.V901I 0.52 tolerated(0.22) benign(0.006) TCGA-BQ-5882-01 4 164050121 164050121 G A NAF1 Silent p.P471P 0.74 TCGA-BQ-5882-01 5 1255515 1255515 C A TERT Missense_Mutation p.C1015F 0.27 deleterious(0) probably_damaging(0.999) TCGA-BQ-5882-01 5 127597425 127597425 C A FBN2 Intron 0.10 TCGA-BQ-5882-01 5 132084160 132084160 C A CCNI2 Nonsense_Mutation p.S184* 0.27 TCGA-BQ-5882-01 5 140563807 140563807 C A PCDHB16 Nonsense_Mutation p.S558* 0.49 TCGA-BQ-5882-01 5 140683316 140683316 C T SLC25A2 Silent p.T39T 0.32 TCGA-BQ-5882-01 6 29323498 29323498 G C OR5V1 Missense_Mutation p.H159D 0.57 deleterious(0) probably_damaging(1) TCGA-BQ-5882-01 6 73108662 73108662 T G RIMS1 Missense_Mutation p.Y1576D 0.39 deleterious(0) possibly_damaging(0.856) TCGA-BQ-5882-01 7 100681165 100681165 T C MUC17 Silent p.Y2156Y 0.31 TCGA-BQ-5882-01 7 116340025 116340025 T C MET Missense_Mutation p.L296P 0.30 deleterious(0) probably_damaging(0.999) TCGA-BQ-5882-01 7 121651531 121651531 C T PTPRZ1 Silent p.L811L 0.30 TCGA-BQ-5882-01 7 36445953 36445953 T C ANLN Silent p.N217N 0.32 TCGA-BQ-5882-01 8 109489022 109489022 C T EMC2 Silent p.T201T 0.33 TCGA-BQ-5882-01 8 130883632 130883632 C A FAM49B Nonsense_Mutation p.E62* 0.36 TCGA-BQ-5882-01 8 133816926 133816926 G C PHF20L1 Missense_Mutation p.R263T 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-BQ-5882-01 8 30938567 30938567 G A WRN Missense_Mutation p.V342I 0.23 tolerated(0.39) benign(0.002) TCGA-BQ-5882-01 8 38831823 38831823 G A HTRA4 Missense_Mutation p.C14Y 0.21 tolerated_low_confidence(0.68) benign(0.005) TCGA-BQ-5882-01 9 101894787 101894787 T A TGFBR1 Intron 0.28 TCGA-BQ-5882-01 9 140328840 140328840 A - ENTPD8 3'UTR 0.32 TCGA-BQ-5882-01 9 35676109 35676109 G T CA9 Missense_Mutation p.R218L 0.12 deleterious(0.02) benign(0.41) TCGA-BQ-5882-01 9 37537307 37537307 G T FBXO10 Missense_Mutation p.L407M 0.35 tolerated(0.12) probably_damaging(0.956) TCGA-BQ-5882-01 X 21875588 21875588 G A YY2 Missense_Mutation p.R329H 0.70 deleterious(0.03) probably_damaging(1) TCGA-BQ-5883-01 10 115978231 115978231 A T TDRD1 Missense_Mutation p.K794N 0.07 deleterious(0) benign(0.035) TCGA-BQ-5883-01 10 127459092 127459092 C T MMP21 Missense_Mutation p.V350M 0.05 tolerated(0.1) benign(0.091) TCGA-BQ-5883-01 11 110450663 110450663 C T ARHGAP20 Missense_Mutation p.G1003S 0.04 tolerated(0.25) benign(0.005) TCGA-BQ-5883-01 11 126201299 126201299 G T DCPS Splice_Site p.X126_splice 0.06 TCGA-BQ-5883-01 11 984672 984672 C T AP2A2 Nonsense_Mutation p.Q245* 0.08 TCGA-BQ-5883-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.33 deleterious(0) benign(0.361) TCGA-BQ-5883-01 12 48596939 48596939 A G OR10AD1 Missense_Mutation p.I46T 0.10 deleterious(0) possibly_damaging(0.776) TCGA-BQ-5883-01 14 81862455 81862455 C G STON2 Missense_Mutation p.E52D 0.10 tolerated_low_confidence(0.29) benign(0.011) TCGA-BQ-5883-01 15 101013174 101013174 C - CERS3 Frame_Shift_Del p.T232Pfs*3 0.17 TCGA-BQ-5883-01 15 44109600 44109600 T G MFAP1 Silent p.G42G 0.06 TCGA-BQ-5883-01 16 32265013 32265013 T C TP53TG3D Silent p.T113T 0.07 TCGA-BQ-5883-01 17 8108544 8108544 C T AURKB Missense_Mutation p.R284H 0.10 deleterious(0.01) possibly_damaging(0.555) TCGA-BQ-5883-01 18 20573491 20573491 C G RBBP8 Missense_Mutation p.C567W 0.05 tolerated(0.14) benign(0.029) TCGA-BQ-5883-01 1 154294468 154294468 C T AQP10 Silent p.F55F 0.05 TCGA-BQ-5883-01 1 19545821 19545821 C T EMC1 Silent p.K986K 0.06 TCGA-BQ-5883-01 1 76282197 76282197 A C MSH4 Missense_Mutation p.N319H 0.04 tolerated(0.12) benign(0.082) TCGA-BQ-5883-01 20 47632919 47632919 G A ARFGEF2 Missense_Mutation p.V1428I 0.30 tolerated(0.91) benign(0.001) TCGA-BQ-5883-01 22 24123480 24123480 G A MMP11 Missense_Mutation p.R320H 0.26 deleterious(0.05) probably_damaging(0.997) TCGA-BQ-5883-01 2 130931124 130931124 C T SMPD4 Missense_Mutation p.V117M 0.17 tolerated(0.08) probably_damaging(0.934) TCGA-BQ-5883-01 2 137852688 137852688 C T THSD7B Missense_Mutation p.P399L 0.09 tolerated(0.08) probably_damaging(0.991) TCGA-BQ-5883-01 3 40465427 40465427 T A ENTPD3 Silent p.T442T 0.04 TCGA-BQ-5883-01 3 46492033 46492033 A G LTF Silent p.S278S 0.07 TCGA-BQ-5883-01 4 123264653 123264653 C G KIAA1109 Silent p.G4147G 0.08 TCGA-BQ-5883-01 5 140229899 140229899 C T PCDHA9 Missense_Mutation p.L607F 0.09 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-BQ-5883-01 7 92763422 92763422 G A SAMD9L Silent p.I621I 0.03 TCGA-BQ-5883-01 8 131916171 131916174 TAAG - ADCY8 Frame_Shift_Del p.Y585* 0.15 TCGA-BQ-5883-01 8 30210564 30210564 C - TUBBP1 RNA 0.08 TCGA-BQ-5883-01 9 74300679 74300679 G C TMEM2 Missense_Mutation p.P1312R 0.08 tolerated(0.08) possibly_damaging(0.563) TCGA-BQ-5884-01 10 16871011 16871011 T A CUBN Missense_Mutation p.R3519S 0.24 tolerated(1) benign(0.003) TCGA-BQ-5884-01 10 32582651 32582651 C A EPC1 Missense_Mutation p.A110S 0.26 tolerated(0.39) possibly_damaging(0.654) TCGA-BQ-5884-01 10 43088537 43088537 T G ZNF33B Missense_Mutation p.K621Q 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-BQ-5884-01 10 74322781 74322786 TTTTTA GTTTT MICU1 Frame_Shift_Del p.L66Qfs*46 0.12 TCGA-BQ-5884-01 10 91178386 91178387 - GCTC IFIT5 Frame_Shift_Ins p.R479Afs*45 0.15 TCGA-BQ-5884-01 11 10823076 10823079 GTAT AGTAC EIF4G2 Intron 0.22 TCGA-BQ-5884-01 11 110036283 110036283 T A ZC3H12C Missense_Mutation p.C825S 0.17 tolerated(0.93) benign(0.027) TCGA-BQ-5884-01 12 100041928 100041929 - A FAM71C 5'UTR 0.16 TCGA-BQ-5884-01 12 110488880 110488880 T - C12orf76 Intron 0.30 TCGA-BQ-5884-01 12 123253468 123253468 G - DENR Frame_Shift_Del 0.24 TCGA-BQ-5884-01 12 21422427 21422430 AATT - SLCO1A2 3'UTR 0.26 TCGA-BQ-5884-01 12 56630209 56630209 C G SLC39A5 Silent p.L325L 0.27 TCGA-BQ-5884-01 12 56742947 56742947 C T STAT2 Silent p.Q480Q 0.25 TCGA-BQ-5884-01 13 39265553 39265553 A G FREM2 Missense_Mutation p.T1358A 0.23 tolerated(0.71) benign(0.001) TCGA-BQ-5884-01 13 45913688 45913688 T A TPT1 Missense_Mutation p.M115L 0.22 deleterious(0.04) benign(0.04) TCGA-BQ-5884-01 13 49796387 49796387 C G MLNR Silent p.L371L 0.25 TCGA-BQ-5884-01 16 2122849 2122849 G A TSC2 Splice_Site p.X741_splice 0.45 TCGA-BQ-5884-01 17 77915895 77915895 C A TBC1D16 Silent p.L673L 0.14 TCGA-BQ-5884-01 17 79220316 79220316 C T SLC38A10 Silent p.Q800Q 0.29 TCGA-BQ-5884-01 18 56587630 56587630 C T ZNF532 Missense_Mutation p.T704I 0.22 tolerated(0.09) benign(0) TCGA-BQ-5884-01 19 30308341 30308341 A G CCNE1 Missense_Mutation p.I119V 0.05 tolerated(1) possibly_damaging(0.548) TCGA-BQ-5884-01 19 41800265 41800265 C G HNRNPUL1 Missense_Mutation p.P430R 0.24 deleterious(0) unknown(0) TCGA-BQ-5884-01 1 200376079 200376079 A C ZNF281 3'UTR 0.30 TCGA-BQ-5884-01 1 232650793 232650793 A C SIPA1L2 Missense_Mutation p.L98R 0.21 tolerated(0.57) benign(0.16) TCGA-BQ-5884-01 1 24979017 24979017 A T SRRM1 Missense_Mutation p.K273M 0.29 unknown(0) TCGA-BQ-5884-01 1 32100869 32100869 T C PEF1 Silent p.P93P 0.22 TCGA-BQ-5884-01 1 53555558 53555558 G A SLC1A7 Silent p.A425A 0.05 TCGA-BQ-5884-01 20 50769885 50769885 C T ZFP64 Silent p.S282S 0.33 TCGA-BQ-5884-01 21 34799207 34799207 A T IFNGR2 Silent p.P143P 0.28 TCGA-BQ-5884-01 2 160086335 160086335 C A TANC1 Silent p.P1466P 0.25 TCGA-BQ-5884-01 2 170034511 170034513 GAT - LRP2 In_Frame_Del p.H3398del 0.29 TCGA-BQ-5884-01 2 227662872 227662872 C T IRS1 Missense_Mutation p.V195M 0.26 deleterious(0) probably_damaging(0.973) TCGA-BQ-5884-01 2 39285904 39285904 C T SOS1 Nonsense_Mutation p.W85* 0.28 TCGA-BQ-5884-01 3 131254172 131254172 G A CPNE4 Missense_Mutation p.A514V 0.21 tolerated(0.14) probably_damaging(0.985) TCGA-BQ-5884-01 4 113199250 113199250 T G TIFA Missense_Mutation p.K108T 0.26 deleterious(0) probably_damaging(1) TCGA-BQ-5884-01 4 119631350 119631350 T A METTL14 Missense_Mutation p.S422T 0.17 tolerated_low_confidence(0.72) unknown(0) TCGA-BQ-5884-01 4 123161284 123161284 G C KIAA1109 Missense_Mutation p.E1483Q 0.22 possibly_damaging(0.464) TCGA-BQ-5884-01 5 142283206 142283206 G C ARHGAP26 Missense_Mutation p.M268I 0.18 tolerated(0.3) benign(0.019) TCGA-BQ-5884-01 5 160753381 160753381 C G GABRB2 Silent p.L395L 0.04 TCGA-BQ-5884-01 5 169477372 169477372 G C DOCK2 Missense_Mutation p.G1395A 0.24 deleterious(0.03) benign(0.107) TCGA-BQ-5884-01 5 176831305 176831305 G A F12 Missense_Mutation p.P304S 0.24 tolerated(0.19) benign(0.045) TCGA-BQ-5884-01 5 179193285 179193285 G T MAML1 Missense_Mutation p.G425V 0.04 deleterious(0.02) benign(0.394) TCGA-BQ-5884-01 5 81474374 81474374 C A ATG10 Missense_Mutation p.L141I 0.17 tolerated(0.13) benign(0.101) TCGA-BQ-5884-01 6 33423041 33423041 A G ZBTB9 Missense_Mutation p.Q55R 0.26 deleterious(0) possibly_damaging(0.53) TCGA-BQ-5884-01 6 43333130 43333130 T - ZNF318 Frame_Shift_Del p.I150Sfs*37 0.28 TCGA-BQ-5884-01 6 74229620 74229620 T C EEF1A1 Missense_Mutation p.K44E 0.08 deleterious_low_confidence(0.01) benign(0.011) TCGA-BQ-5884-01 6 87964665 87964665 T C ZNF292 Missense_Mutation p.W440R 0.10 deleterious(0) probably_damaging(0.999) TCGA-BQ-5884-01 7 103019735 103019735 A C SLC26A5 Missense_Mutation p.I544M 0.33 tolerated(0.19) probably_damaging(0.999) TCGA-BQ-5884-01 7 157046775 157046775 A G UBE3C Missense_Mutation p.Q941R 0.37 deleterious(0.05) benign(0.225) TCGA-BQ-5884-01 7 92019370 92019370 T C ANKIB1 Silent p.Y664Y 0.25 TCGA-BQ-5884-01 8 123965936 123965936 A C ZHX2 Missense_Mutation p.Q729P 0.24 tolerated(0.14) benign(0) TCGA-BQ-5884-01 8 142477599 142477599 G A MROH5 3'UTR 0.24 TCGA-BQ-5884-01 8 22452077 22452077 C T PDLIM2 3'Flank 0.06 TCGA-BQ-5884-01 8 87226722 87226722 T A SLC7A13 Nonsense_Mutation p.R445* 0.31 TCGA-BQ-5884-01 9 114178598 114178598 A G KIAA0368 Missense_Mutation p.M751T 0.24 tolerated(0.85) benign(0.002) TCGA-BQ-5884-01 9 86258746 86258746 C G IDNK 3'UTR 0.33 TCGA-BQ-5884-01 9 86955546 86955546 C A SLC28A3 Translation_Start_Site p.M1? 0.05 deleterious_low_confidence(0.03) benign(0.023) TCGA-BQ-5884-01 X 1718090 1718090 A T AKAP17A Missense_Mutation p.Q306L 0.15 deleterious(0.02) unknown(0) TCGA-BQ-5885-01 10 104130513 104130513 C A GBF1 Missense_Mutation p.L1185I 0.35 tolerated(0.17) benign(0.282) TCGA-BQ-5885-01 10 104679308 104679308 G T CNNM2 Missense_Mutation p.E357D 0.32 deleterious(0) probably_damaging(0.992) TCGA-BQ-5885-01 10 108412294 108412294 G A SORCS1 Missense_Mutation p.S774F 0.31 deleterious(0) probably_damaging(0.974) TCGA-BQ-5885-01 10 127455494 127455494 T G MMP21 Missense_Mutation p.N483H 0.27 tolerated(0.14) possibly_damaging(0.617) TCGA-BQ-5885-01 10 30749913 30749913 G T MAP3K8 3'UTR 0.50 TCGA-BQ-5885-01 10 64960365 64960365 A - JMJD1C Frame_Shift_Del p.L1716Yfs*9 0.33 TCGA-BQ-5885-01 10 72537063 72537063 T C TBATA Missense_Mutation p.E179G 0.28 deleterious(0) probably_damaging(0.944) TCGA-BQ-5885-01 10 75294429 75294429 G A USP54 Missense_Mutation p.S415F 0.35 deleterious(0) probably_damaging(0.997) TCGA-BQ-5885-01 10 99400806 99400806 G A PI4K2A Missense_Mutation p.E103K 0.27 tolerated(0.88) benign(0.001) TCGA-BQ-5885-01 11 118771686 118771686 A C BCL9L Missense_Mutation p.N922K 0.24 benign(0.4) TCGA-BQ-5885-01 11 124179984 124179984 G T OR8D1 Missense_Mutation p.H227N 0.08 deleterious(0.03) benign(0.109) TCGA-BQ-5885-01 11 124310919 124310919 C T OR8B8 Silent p.P21P 0.36 TCGA-BQ-5885-01 11 601639 601639 T C PHRF1 Missense_Mutation p.S364P 0.47 deleterious(0.04) possibly_damaging(0.843) TCGA-BQ-5885-01 11 64888258 64888258 C A FAU Missense_Mutation p.K99N 0.37 deleterious(0) probably_damaging(0.94) TCGA-BQ-5885-01 11 66260242 66260242 G A DPP3 Silent p.A348A 0.41 TCGA-BQ-5885-01 11 75509461 75509461 C T DGAT2 Silent p.P333P 0.31 TCGA-BQ-5885-01 11 99690367 99690367 A C CNTN5 Missense_Mutation p.T50P 0.12 tolerated_low_confidence(0.08) benign(0.092) TCGA-BQ-5885-01 12 104698219 104698219 T A EID3 Missense_Mutation p.H169Q 0.42 deleterious(0) probably_damaging(0.928) TCGA-BQ-5885-01 12 31586129 31586130 - GGCGAA DENND5B In_Frame_Ins p.L687_R688dup 0.13 TCGA-BQ-5885-01 12 31586145 31586145 T C DENND5B Missense_Mutation p.K684E 0.26 deleterious(0.04) benign(0.081) TCGA-BQ-5885-01 12 53931334 53931334 A T ATF7 Silent p.A89A 0.32 TCGA-BQ-5885-01 12 64521913 64521913 C A SRGAP1 Missense_Mutation p.S938Y 0.28 deleterious(0) possibly_damaging(0.781) TCGA-BQ-5885-01 12 8212439 8212439 C T C3AR1 Missense_Mutation p.A115T 0.27 deleterious(0.02) possibly_damaging(0.589) TCGA-BQ-5885-01 13 111885553 111885553 G A ARHGEF7 Silent p.E245E 0.58 TCGA-BQ-5885-01 13 29001983 29001983 G A FLT1 Silent p.D394D 0.04 TCGA-BQ-5885-01 14 51131903 51131903 C T SAV1 Missense_Mutation p.A177T 0.58 tolerated(0.85) benign(0) TCGA-BQ-5885-01 15 41983867 41983867 T A MGA Intron 0.39 TCGA-BQ-5885-01 16 18841596 18841596 G T SMG1 Missense_Mutation p.A2963E 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-BQ-5885-01 16 18841597 18841597 C T SMG1 Missense_Mutation p.A2963T 0.44 deleterious(0.01) probably_damaging(0.984) TCGA-BQ-5885-01 16 27374876 27374876 C T IL4R Nonsense_Mutation p.Q735* 0.24 TCGA-BQ-5885-01 16 50059600 50059600 G A CNEP1R1 Missense_Mutation p.G22S 0.05 tolerated(0.74) benign(0.122) TCGA-BQ-5885-01 16 50667463 50667463 C G NKD1 Missense_Mutation p.A395G 0.32 tolerated(0.23) benign(0.008) TCGA-BQ-5885-01 17 13977738 13977738 A C COX10 Missense_Mutation p.I48L 0.35 tolerated_low_confidence(0.44) benign(0.002) TCGA-BQ-5885-01 17 3458126 3458126 C T TRPV3 Missense_Mutation p.E7K 0.31 deleterious_low_confidence(0) possibly_damaging(0.734) TCGA-BQ-5885-01 17 43585458 43585462 TGGGC - LRRC37A4P 3'Flank 0.29 TCGA-BQ-5885-01 17 59544913 59544913 G C TBX4 Silent p.L148L 0.30 TCGA-BQ-5885-01 17 7674232 7674232 G A DNAH2 Missense_Mutation p.R1448H 0.13 probably_damaging(0.998) TCGA-BQ-5885-01 17 80320426 80320426 C A TEX19 Missense_Mutation p.L134M 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-BQ-5885-01 18 23731852 23731852 A G PSMA8 Missense_Mutation p.N93S 0.31 tolerated(0.09) benign(0.014) TCGA-BQ-5885-01 19 17778940 17778940 G A UNC13A Missense_Mutation p.R152W 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.526) TCGA-BQ-5885-01 19 18123878 18123878 A G ARRDC2 3'UTR 0.33 TCGA-BQ-5885-01 19 19603133 19603133 G T GATAD2A Missense_Mutation p.R96S 0.53 deleterious(0) benign(0.158) TCGA-BQ-5885-01 19 2917763 2917763 C T ZNF57 Missense_Mutation p.H382Y 0.40 deleterious(0) probably_damaging(0.986) TCGA-BQ-5885-01 19 39667267 39667267 G T PAK4 Missense_Mutation p.S466I 0.42 deleterious(0) probably_damaging(0.977) TCGA-BQ-5885-01 19 9868191 9868191 A G ZNF846 Missense_Mutation p.L521P 0.36 deleterious(0) probably_damaging(0.997) TCGA-BQ-5885-01 1 109735396 109735396 G T KIAA1324 Missense_Mutation p.G616V 0.39 deleterious(0) probably_damaging(0.993) TCGA-BQ-5885-01 1 118475908 118475908 C T WDR3 Intron 0.32 TCGA-BQ-5885-01 1 160326495 160326495 C T NCSTN Missense_Mutation p.T582I 0.27 deleterious(0) benign(0.397) TCGA-BQ-5885-01 1 171303821 171303821 A G FMO4 Missense_Mutation p.I367V 0.28 tolerated(1) benign(0.023) TCGA-BQ-5885-01 1 171303822 171303822 T C FMO4 Missense_Mutation p.I367T 0.29 deleterious(0) possibly_damaging(0.529) TCGA-BQ-5885-01 1 184943459 184943459 G T FAM129A Missense_Mutation p.D10E 0.30 deleterious(0.02) benign(0.14) TCGA-BQ-5885-01 1 204586967 204586967 A G LRRN2 3'UTR 0.31 TCGA-BQ-5885-01 1 236738095 236738095 C T HEATR1 Missense_Mutation p.G1065R 0.41 tolerated(0.25) benign(0.126) TCGA-BQ-5885-01 1 236749736 236749736 T C HEATR1 Missense_Mutation p.I578V 0.33 tolerated(0.31) benign(0.001) TCGA-BQ-5885-01 1 248366486 248366486 C A OR2M3 Missense_Mutation p.F39L 0.09 tolerated(1) benign(0.002) TCGA-BQ-5885-01 1 26603078 26603078 A T CEP85 Missense_Mutation p.H652L 0.62 deleterious(0.03) benign(0.197) TCGA-BQ-5885-01 1 36915923 36915923 C T OSCP1 Silent p.E16E 0.39 TCGA-BQ-5885-01 1 46751890 46751890 T G LRRC41 Silent p.S213S 0.33 TCGA-BQ-5885-01 1 54640395 54640395 C T CYB5RL Missense_Mutation p.R282K 0.43 tolerated(0.09) benign(0.02) TCGA-BQ-5885-01 20 1551504 1551504 T A SIRPB1 Missense_Mutation p.Y344F 0.39 tolerated(0.68) benign(0.001) TCGA-BQ-5885-01 20 3146663 3146663 G A LZTS3 Missense_Mutation p.S268L 0.06 tolerated(0.63) benign(0.016) TCGA-BQ-5885-01 20 57613690 57613690 C T SLMO2 Splice_Site p.X11_splice 0.40 TCGA-BQ-5885-01 22 30737847 30737847 T A SF3A1 Missense_Mutation p.E302V 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-BQ-5885-01 22 39482535 39482535 C G APOBEC3G Silent p.A329A 0.29 TCGA-BQ-5885-01 22 46804928 46804928 C T CELSR1 Missense_Mutation p.A1731T 0.25 deleterious(0.03) probably_damaging(0.969) TCGA-BQ-5885-01 2 101670697 101670697 G A TBC1D8 Silent p.F153F 0.79 TCGA-BQ-5885-01 2 120439354 120439354 G A TMEM177 Missense_Mutation p.G309S 0.32 tolerated_low_confidence(0.11) benign(0.072) TCGA-BQ-5885-01 2 141819633 141819633 A T LRP1B Missense_Mutation p.I408N 0.36 benign(0.446) TCGA-BQ-5885-01 2 170083080 170083080 A G LRP2 Missense_Mutation p.I1749T 0.22 benign(0.347) TCGA-BQ-5885-01 2 222365873 222365873 G - EPHA4 Frame_Shift_Del p.Y281* 0.46 TCGA-BQ-5885-01 2 225422516 225422516 G A CUL3 Nonsense_Mutation p.Q42* 0.54 TCGA-BQ-5885-01 2 234449396 234449396 G T USP40 Missense_Mutation p.P372H 0.43 deleterious(0.05) possibly_damaging(0.754) TCGA-BQ-5885-01 2 234847784 234847784 T A TRPM8 Missense_Mutation p.I164N 0.41 deleterious(0) probably_damaging(0.997) TCGA-BQ-5885-01 2 24426474 24426474 T C ITSN2 3'UTR 0.21 TCGA-BQ-5885-01 2 27440797 27440797 C A CAD Nonsense_Mutation p.Y45* 0.39 TCGA-BQ-5885-01 2 55253513 55253513 T A RTN4 Missense_Mutation p.E574D 0.22 deleterious(0) probably_damaging(0.986) TCGA-BQ-5885-01 2 55253514 55253514 T G RTN4 Missense_Mutation p.E574A 0.22 deleterious(0) probably_damaging(0.983) TCGA-BQ-5885-01 2 61505306 61505306 T - USP34 Frame_Shift_Del p.G1810Dfs*5 0.28 TCGA-BQ-5885-01 2 73680677 73680677 T C ALMS1 Silent p.N2340N 0.20 TCGA-BQ-5885-01 2 74902749 74902749 G A SEMA4F Missense_Mutation p.M490I 0.27 tolerated(1) benign(0.292) TCGA-BQ-5885-01 3 10387742 10387742 G A ATP2B2 Silent p.L828L 0.24 TCGA-BQ-5885-01 3 113798773 113798773 G A QTRTD1 Missense_Mutation p.R268Q 0.40 tolerated(0.19) benign(0.022) TCGA-BQ-5885-01 3 167083714 167083714 T G ZBBX Missense_Mutation p.Q78P 0.38 deleterious(0.04) benign(0.033) TCGA-BQ-5885-01 3 172224404 172224404 T A TNFSF10 Missense_Mutation p.I242F 0.35 deleterious(0) probably_damaging(0.91) TCGA-BQ-5885-01 3 44762384 44762384 G - ZNF502 Frame_Shift_Del p.K25Nfs*16 0.24 TCGA-BQ-5885-01 3 46009968 46009968 C T FYCO1 Silent p.E286E 0.22 TCGA-BQ-5885-01 3 46415150 46415150 A T CCR5 Missense_Mutation p.I253F 0.29 deleterious(0) probably_damaging(0.939) TCGA-BQ-5885-01 3 49726041 49726042 - AAGC MST1 Frame_Shift_Ins p.G29Lfs*12 0.10 TCGA-BQ-5885-01 4 123336554 123336554 A G ADAD1 Missense_Mutation p.T424A 0.07 deleterious(0.02) possibly_damaging(0.874) TCGA-BQ-5885-01 4 125592787 125592787 A G ANKRD50 Silent p.L549L 0.11 TCGA-BQ-5885-01 4 128804442 128804442 C T PLK4 Missense_Mutation p.A51V 0.26 tolerated(0.24) benign(0.26) TCGA-BQ-5885-01 4 151829520 151829520 G A LRBA Nonsense_Mutation p.Q487* 0.33 TCGA-BQ-5885-01 4 187540288 187540291 TCCA - FAT1 Frame_Shift_Del p.I2483Mfs*18 0.27 TCGA-BQ-5885-01 4 4199006 4199006 T C OTOP1 Missense_Mutation p.S519G 0.26 tolerated(0.4) benign(0.002) TCGA-BQ-5885-01 4 4199007 4199007 C T OTOP1 Silent p.E518E 0.26 TCGA-BQ-5885-01 4 76877179 76877179 C T SDAD1 Silent p.R655R 0.33 TCGA-BQ-5885-01 5 10402110 10402110 A - MARCH6 Intron 0.29 TCGA-BQ-5885-01 5 114469835 114469835 A G TRIM36 Missense_Mutation p.V419A 0.30 tolerated(1) benign(0.001) TCGA-BQ-5885-01 5 140228538 140228538 C A PCDHA9 Missense_Mutation p.P153Q 0.26 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BQ-5885-01 5 140784720 140784720 G C PCDHGA9 Missense_Mutation p.G734A 0.32 deleterious_low_confidence(0.02) benign(0.223) TCGA-BQ-5885-01 5 140856636 140856636 A G PCDHGC3 Missense_Mutation p.H318R 0.34 deleterious(0) possibly_damaging(0.464) TCGA-BQ-5885-01 5 32126417 32126417 C A GOLPH3 Missense_Mutation p.K266N 0.21 tolerated(0.5) probably_damaging(0.962) TCGA-BQ-5885-01 5 56545332 56545332 T G GPBP1 Missense_Mutation p.F308V 0.31 deleterious(0) possibly_damaging(0.804) TCGA-BQ-5885-01 5 64905230 64905230 A T TRIM23 Missense_Mutation p.L295Q 0.31 deleterious(0) probably_damaging(0.946) TCGA-BQ-5885-01 5 66478708 66478708 T G CD180 Silent p.R655R 0.34 TCGA-BQ-5885-01 5 96328816 96328816 T A LNPEP Missense_Mutation p.I410N 0.40 deleterious(0) probably_damaging(0.981) TCGA-BQ-5885-01 6 106992678 106992678 C A AIM1 Missense_Mutation p.H1320N 0.31 deleterious(0) probably_damaging(1) TCGA-BQ-5885-01 6 137243696 137243696 G C SLC35D3 Missense_Mutation p.V44L 0.35 tolerated(0.54) benign(0.003) TCGA-BQ-5885-01 6 31507042 31507042 T C DDX39B Missense_Mutation p.E74G 0.43 deleterious(0.01) possibly_damaging(0.751) TCGA-BQ-5885-01 6 32188966 32188966 G A NOTCH4 Silent p.N196N 0.05 TCGA-BQ-5885-01 6 56347659 56347659 A G DST Missense_Mutation p.L4452S 0.32 probably_damaging(1) TCGA-BQ-5885-01 7 127637844 127637844 C A SND1 Intron 0.31 TCGA-BQ-5885-01 7 27856087 27856087 T C TAX1BP1 Silent p.N628N 0.34 TCGA-BQ-5885-01 7 63721262 63721262 G A ZNF679 Missense_Mutation p.E73K 0.42 tolerated(0.15) benign(0.048) TCGA-BQ-5885-01 7 65705943 65705964 CAAATTTCTCCTGATGGTCCGA - TPST1 Frame_Shift_Del p.K178Mfs*9 0.29 TCGA-BQ-5885-01 7 86802963 86802966 AAGG - DMTF1 Splice_Site p.X147_splice 0.24 TCGA-BQ-5885-01 7 91631868 91631868 A G AKAP9 Silent p.E879E 0.30 TCGA-BQ-5885-01 7 92119227 92119227 T C PEX1 Splice_Site p.X1147_splice 0.45 TCGA-BQ-5885-01 7 97823720 97823720 G C LMTK2 Missense_Mutation p.E1315Q 0.33 tolerated(0.33) possibly_damaging(0.863) TCGA-BQ-5885-01 8 102381094 102381094 G T NACAP1 RNA 0.20 TCGA-BQ-5885-01 8 110587763 110587763 T - SYBU Frame_Shift_Del p.D455Afs*19 0.28 TCGA-BQ-5885-01 8 133854952 133854952 G C PHF20L1 Missense_Mutation p.E860D 0.47 deleterious(0.01) probably_damaging(0.984) TCGA-BQ-5885-01 8 144944250 144944250 G T EPPK1 Missense_Mutation p.L1058I 0.32 probably_damaging(0.998) TCGA-BQ-5885-01 8 145806407 145806407 T C ARHGAP39 Missense_Mutation p.N112S 0.40 tolerated(0.57) possibly_damaging(0.889) TCGA-BQ-5885-01 8 17401959 17401959 G T SLC7A2 Splice_Site p.X166_splice 0.31 TCGA-BQ-5885-01 8 25715868 25715868 G A EBF2 Silent p.L499L 0.32 TCGA-BQ-5885-01 8 48826505 48826505 G A PRKDC Nonsense_Mutation p.R913* 0.31 TCGA-BQ-5885-01 8 71126196 71126196 A C NCOA2 Silent p.P67P 0.31 TCGA-BQ-5885-01 9 118997553 118997553 C G PAPPA Missense_Mutation p.P790R 0.37 deleterious(0) possibly_damaging(0.804) TCGA-BQ-5885-01 9 38571968 38571968 T A ANKRD18A 3'UTR 0.34 TCGA-BQ-5885-01 9 72901129 72901129 A T SMC5 Missense_Mutation p.K332M 0.38 deleterious(0.01) possibly_damaging(0.776) TCGA-BQ-5885-01 X 115303624 115303624 T G AGTR2 Missense_Mutation p.S31A 0.65 tolerated(0.41) benign(0.008) TCGA-BQ-5886-01 10 129350829 129350829 T - NPS Frame_Shift_Del p.F66Lfs*2 0.14 TCGA-BQ-5886-01 10 73521465 73521465 C T C10orf54 Missense_Mutation p.R134H 0.06 tolerated(0.59) benign(0.003) TCGA-BQ-5886-01 10 99349694 99349694 T A C10orf62 Missense_Mutation p.S14T 0.08 tolerated(0.59) benign(0.001) TCGA-BQ-5886-01 11 120336044 120336044 G T ARHGEF12 Missense_Mutation p.K904N 0.29 deleterious(0.03) probably_damaging(0.991) TCGA-BQ-5886-01 11 13378432 13378432 A C ARNTL Intron 0.50 TCGA-BQ-5886-01 11 55890388 55890388 C A OR8H3 Missense_Mutation p.D180E 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-BQ-5886-01 11 62290316 62290316 C T AHNAK Missense_Mutation p.G3858D 0.09 possibly_damaging(0.683) TCGA-BQ-5886-01 11 62346405 62346405 T C TUT1 Missense_Mutation p.D301G 0.27 tolerated(0.13) benign(0.023) TCGA-BQ-5886-01 11 8751785 8751785 G A ST5 Missense_Mutation p.P351L 0.22 tolerated(0.38) benign(0) TCGA-BQ-5886-01 12 49431830 49431830 A T KMT2D Silent p.A3103A 0.33 TCGA-BQ-5886-01 12 62972277 62972277 G A MON2 Missense_Mutation p.D1523N 0.18 deleterious(0.01) possibly_damaging(0.883) TCGA-BQ-5886-01 12 76444427 76444427 C T NAP1L1 Missense_Mutation p.D315N 0.31 deleterious(0.02) benign(0.411) TCGA-BQ-5886-01 13 41515309 41515309 G A ELF1 Missense_Mutation p.P335L 0.23 deleterious(0.04) benign(0.027) TCGA-BQ-5886-01 14 67389425 67389425 G C GPHN Missense_Mutation p.D167H 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-BQ-5886-01 14 74416831 74416831 C G FAM161B Missense_Mutation p.A30P 0.32 deleterious_low_confidence(0.03) benign(0.033) TCGA-BQ-5886-01 14 96761860 96761860 A T ATG2B Missense_Mutation p.L1726H 0.32 deleterious(0) probably_damaging(0.985) TCGA-BQ-5886-01 16 31371300 31371300 G A ITGAX Silent p.R207R 0.48 TCGA-BQ-5886-01 16 3273696 3273696 T C ZNF200 3'UTR 0.47 TCGA-BQ-5886-01 16 66547680 66547680 T A TK2 Missense_Mutation p.E218V 0.07 deleterious(0) possibly_damaging(0.891) TCGA-BQ-5886-01 17 26948415 26948415 A G KIAA0100 Splice_Site p.X1687_splice 0.22 TCGA-BQ-5886-01 17 42089271 42089272 - CAT TMEM101 3'UTR 0.49 TCGA-BQ-5886-01 17 48192925 48192926 - A SAMD14 Intron 0.39 TCGA-BQ-5886-01 17 6606332 6606332 T G SLC13A5 Missense_Mutation p.T225P 0.28 deleterious(0) probably_damaging(0.997) TCGA-BQ-5886-01 17 72954436 72954436 C G HID1 Missense_Mutation p.D460H 0.10 deleterious(0) probably_damaging(1) TCGA-BQ-5886-01 17 73752809 73752809 C T ITGB4 Missense_Mutation p.P1641L 0.22 deleterious(0) probably_damaging(0.999) TCGA-BQ-5886-01 17 8812455 8812455 A G PIK3R5 Missense_Mutation p.L47P 0.14 deleterious(0) probably_damaging(0.995) TCGA-BQ-5886-01 19 2477582 2477582 T A GADD45B Missense_Mutation p.S156T 0.30 tolerated(0.95) benign(0.011) TCGA-BQ-5886-01 19 3179456 3179456 C T S1PR4 Silent p.L222L 0.32 TCGA-BQ-5886-01 19 36831480 36831480 G A ZFP14 Silent p.S416S 0.33 TCGA-BQ-5886-01 19 36831481 36831481 C T ZFP14 Missense_Mutation p.S416N 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-BQ-5886-01 19 40395905 40395905 T G FCGBP Missense_Mutation p.N2498H 0.13 benign(0.103) TCGA-BQ-5886-01 19 40395906 40395906 C T FCGBP Silent p.E2497E 0.13 TCGA-BQ-5886-01 19 45322968 45322968 G T BCAM Missense_Mutation p.R583L 0.41 tolerated(0.24) benign(0.062) TCGA-BQ-5886-01 19 57839185 57839185 G - ZNF543 Frame_Shift_Del p.Q120Nfs*16 0.22 TCGA-BQ-5886-01 19 7686169 7686169 G - XAB2 Frame_Shift_Del p.I545Sfs*17 0.10 TCGA-BQ-5886-01 1 110709565 110709565 G A SLC6A17 Missense_Mutation p.S5N 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.77) TCGA-BQ-5886-01 1 155531892 155531892 A G ASH1L Intron 0.15 TCGA-BQ-5886-01 1 201984378 201984378 G C ELF3 Missense_Mutation p.R348P 0.20 deleterious(0) probably_damaging(0.998) TCGA-BQ-5886-01 1 230883264 230883264 C G CAPN9 Missense_Mutation p.P8A 0.29 tolerated(0.16) benign(0.002) TCGA-BQ-5886-01 1 8420197 8420197 G C RERE Missense_Mutation p.P1124A 0.25 unknown(0) TCGA-BQ-5886-01 20 3016279 3016279 G T PTPRA Missense_Mutation p.D657Y 0.44 tolerated(1) probably_damaging(1) TCGA-BQ-5886-01 20 49366607 49366607 T C PARD6B Missense_Mutation p.M234T 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-BQ-5886-01 21 46067216 46067216 G A KRTAP10-11 Missense_Mutation p.A281T 0.06 tolerated(0.37) possibly_damaging(0.798) TCGA-BQ-5886-01 22 29627008 29627008 G T EMID1 Splice_Site p.X156_splice 0.25 TCGA-BQ-5886-01 22 50885659 50885659 G C SBF1 Missense_Mutation p.T1865R 0.20 deleterious(0.01) possibly_damaging(0.718) TCGA-BQ-5886-01 2 170072853 170072853 A G LRP2 Silent p.T1912T 0.39 TCGA-BQ-5886-01 2 62066806 62066806 G A FAM161A Missense_Mutation p.H445Y 0.31 tolerated(0.07) benign(0.025) TCGA-BQ-5886-01 2 97373520 97373520 T C LMAN2L Missense_Mutation p.T290A 0.24 tolerated(0.24) benign(0.075) TCGA-BQ-5886-01 3 108788509 108788509 T A MORC1 Missense_Mutation p.K262I 0.27 deleterious(0) probably_damaging(0.973) TCGA-BQ-5886-01 3 15298286 15298286 G A SH3BP5 Intron 0.17 TCGA-BQ-5886-01 3 37340849 37340849 T C GOLGA4 Missense_Mutation p.L380P 0.53 probably_damaging(1) TCGA-BQ-5886-01 4 100787280 100787280 T G DAPP1 Splice_Site p.X258_splice 0.25 TCGA-BQ-5886-01 5 140481178 140481178 T C PCDHB3 Silent p.Y315Y 0.38 TCGA-BQ-5886-01 5 167674296 167674296 C A TENM2 Missense_Mutation p.R2118S 0.30 tolerated(0.07) possibly_damaging(0.546) TCGA-BQ-5886-01 5 176827191 176827191 T C PFN3 Missense_Mutation p.I129M 0.25 tolerated(0.07) benign(0.07) TCGA-BQ-5886-01 5 68399835 68399835 A G SLC30A5 Intron 0.28 TCGA-BQ-5886-01 5 75913735 75913735 A G F2RL2 Missense_Mutation p.L266S 0.19 deleterious(0) probably_damaging(0.995) TCGA-BQ-5886-01 5 78415082 78415082 T C BHMT Missense_Mutation p.V56A 0.32 deleterious(0) probably_damaging(0.988) TCGA-BQ-5886-01 6 121576521 121576521 T A TBC1D32 Silent p.V657V 0.38 TCGA-BQ-5886-01 6 143091819 143091819 T C HIVEP2 Missense_Mutation p.I1353V 0.31 tolerated(1) probably_damaging(0.977) TCGA-BQ-5886-01 6 30893383 30893383 G C VARS2 Missense_Mutation p.G980R 0.19 tolerated(0.6) benign(0.006) TCGA-BQ-5886-01 6 43226956 43226956 C G TTBK1 Silent p.V399V 0.24 TCGA-BQ-5886-01 6 46977043 46977043 G A GPR110 Missense_Mutation p.P710S 0.25 deleterious(0) probably_damaging(1) TCGA-BQ-5886-01 7 122269335 122269335 A G CADPS2 Silent p.D278D 0.20 TCGA-BQ-5886-01 7 135276257 135276257 T G NUP205 Missense_Mutation p.I511M 0.35 deleterious(0) possibly_damaging(0.781) TCGA-BQ-5886-01 8 142504970 142504970 A G MROH5 3'Flank 0.17 TCGA-BQ-5886-01 8 54764571 54764573 ATT C RGS20 Frame_Shift_Del p.I38Pfs*7 0.31 TCGA-BQ-5886-01 9 106862707 106862707 T C SMC2 Missense_Mutation p.L210S 0.30 deleterious(0) probably_damaging(1) TCGA-BQ-5886-01 9 114359672 114359672 T G PTGR1 Missense_Mutation p.K11Q 0.42 tolerated(0.05) benign(0.013) TCGA-BQ-5886-01 9 128064468 128064468 C T GAPVD1 Missense_Mutation p.T131I 0.31 tolerated(0.22) possibly_damaging(0.882) TCGA-BQ-5886-01 9 131010868 131010868 G A DNM1 Missense_Mutation p.E638K 0.30 tolerated(0.33) benign(0.034) TCGA-BQ-5886-01 9 35077002 35077002 A G FANCG Missense_Mutation p.V248A 0.24 deleterious(0) probably_damaging(0.998) TCGA-BQ-5886-01 X 24089815 24089815 C T EIF2S3 Missense_Mutation p.R385C 0.70 tolerated(0.06) benign(0.002) TCGA-BQ-5886-01 X 44949021 44949021 G A KDM6A Nonsense_Mutation p.W1194* 0.76 TCGA-BQ-5887-01 10 96087727 96087727 G A PLCE1 Intron 0.08 TCGA-BQ-5887-01 12 46244916 46244916 A T ARID2 Missense_Mutation p.S1004C 0.16 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BQ-5887-01 12 4736579 4736579 G C AKAP3 Missense_Mutation p.P497A 0.19 tolerated(0.12) benign(0.257) TCGA-BQ-5887-01 14 106236118 106236118 C T IGHG3 Silent p.T229T 0.14 TCGA-BQ-5887-01 14 24523942 24523942 G A LRRC16B Missense_Mutation p.A129T 0.13 tolerated(0.5) benign(0.045) TCGA-BQ-5887-01 15 33954438 33954438 C T RYR3 Silent p.C1569C 0.13 TCGA-BQ-5887-01 17 18149935 18149935 G A FLII Silent p.F1008F 0.24 TCGA-BQ-5887-01 17 72860612 72860612 G C FDXR Missense_Mutation p.D307E 0.08 tolerated(0.84) benign(0.002) TCGA-BQ-5887-01 18 13731629 13731630 - T RNMT Frame_Shift_Ins p.S39Ffs*7 0.17 TCGA-BQ-5887-01 19 13988494 13988494 A G NANOS3 Silent p.R144R 0.23 TCGA-BQ-5887-01 19 55452315 55452315 C T NLRP7 Silent p.S112S 0.23 TCGA-BQ-5887-01 1 247751788 247751788 T C OR2G2 Silent p.L43L 0.26 TCGA-BQ-5887-01 20 62198513 62198513 C T HELZ2 Missense_Mutation p.R733Q 0.06 tolerated(0.47) benign(0.028) TCGA-BQ-5887-01 22 31529986 31529986 C T INPP5J Missense_Mutation p.L500F 0.21 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-BQ-5887-01 2 187693177 187693177 T A ZSWIM2 Missense_Mutation p.N479I 0.15 tolerated(0.07) benign(0.018) TCGA-BQ-5887-01 2 62115531 62115531 T C CCT4 Missense_Mutation p.I38V 0.45 deleterious(0.01) benign(0.062) TCGA-BQ-5887-01 2 98264602 98264602 G C COX5B 3'UTR 0.27 TCGA-BQ-5887-01 4 76439476 76439476 T C RCHY1 Silent p.E7E 0.15 TCGA-BQ-5887-01 5 137766032 137766032 A G KDM3B Missense_Mutation p.Y1663C 0.15 deleterious(0) possibly_damaging(0.823) TCGA-BQ-5887-01 5 150439876 150439876 C T TNIP1 Intron 0.30 TCGA-BQ-5887-01 5 90052799 90052799 G A GPR98 Missense_Mutation p.A3921T 0.24 benign(0.012) TCGA-BQ-5887-01 6 151789725 151789725 T G C6orf211 Missense_Mutation p.L269W 0.09 deleterious(0) probably_damaging(0.997) TCGA-BQ-5887-01 7 7412962 7412962 C A COL28A1 Missense_Mutation p.D859Y 0.19 deleterious(0) possibly_damaging(0.863) TCGA-BQ-5887-01 7 7412963 7412963 C T COL28A1 Silent p.K858K 0.20 TCGA-BQ-5888-01 10 12811756 12811756 G A CAMK1D Missense_Mutation p.G175R 0.18 deleterious(0) probably_damaging(0.959) TCGA-BQ-5888-01 11 56000140 56000140 G T OR5T2 Missense_Mutation p.S174R 0.23 tolerated(0.39) benign(0.013) TCGA-BQ-5888-01 11 61544792 61544798 GGTGCCC - MYRF Frame_Shift_Del p.V550Tfs*53 0.25 TCGA-BQ-5888-01 12 113704162 113704162 G T TPCN1 Splice_Site p.X210_splice 0.19 TCGA-BQ-5888-01 16 89345492 89345492 G A ANKRD11 Silent p.L2486L 0.20 TCGA-BQ-5888-01 17 33679780 33679780 G A SLFN11 Silent p.A767A 0.21 TCGA-BQ-5888-01 18 8379245 8379245 G A PTPRM Silent p.R1231R 0.22 TCGA-BQ-5888-01 19 49703680 49703680 G T TRPM4 Silent p.V923V 0.26 TCGA-BQ-5888-01 19 54745734 54745734 G T LILRA6 Missense_Mutation p.L126I 0.40 deleterious(0) possibly_damaging(0.784) TCGA-BQ-5888-01 19 56220140 56220140 G A NLRP9 3'UTR 0.15 TCGA-BQ-5888-01 19 841048 841048 C T PRTN3 Silent p.L14L 0.21 TCGA-BQ-5888-01 1 162769622 162769622 C A HSD17B7 Missense_Mutation p.F179L 0.05 tolerated(0.11) possibly_damaging(0.572) TCGA-BQ-5888-01 1 196706023 196706023 A T CFH Missense_Mutation p.N828I 0.10 deleterious(0) probably_damaging(0.912) TCGA-BQ-5888-01 1 204379183 204379183 C A PPP1R15B Nonsense_Mutation p.E453* 0.22 TCGA-BQ-5888-01 1 32508212 32508212 A G KHDRBS1 Missense_Mutation p.Y440C 0.22 deleterious(0) probably_damaging(0.99) TCGA-BQ-5888-01 1 45241253 45241253 C T RPS8 5'UTR 0.15 TCGA-BQ-5888-01 1 84348653 84348653 T C TTLL7 Missense_Mutation p.N846D 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-BQ-5888-01 21 45978127 45978127 C T KRTAP10-3 Missense_Mutation p.V158M 0.22 tolerated(0.11) unknown(0) TCGA-BQ-5888-01 22 46724721 46724721 A C GTSE1 Missense_Mutation p.K621Q 0.17 tolerated(0.45) benign(0.203) TCGA-BQ-5888-01 2 233075106 233075106 C G DIS3L2 Missense_Mutation p.L399V 0.12 deleterious(0.01) benign(0.434) TCGA-BQ-5888-01 3 49755505 49755505 T C AMIGO3 Missense_Mutation p.N465S 0.15 deleterious(0.02) probably_damaging(0.962) TCGA-BQ-5888-01 6 43412937 43412937 C T ABCC10 Missense_Mutation p.A972V 0.05 deleterious(0.01) probably_damaging(0.957) TCGA-BQ-5888-01 7 121681010 121681010 G A PTPRZ1 Silent p.V1926V 0.16 TCGA-BQ-5888-01 8 121518998 121518998 C T MTBP Missense_Mutation p.P594S 0.08 tolerated(0.39) benign(0.046) TCGA-BQ-5889-01 10 17735224 17735224 G A STAM Missense_Mutation p.A150T 0.08 tolerated(0.42) benign(0.032) TCGA-BQ-5889-01 10 51465326 51465326 T G AGAP7 Missense_Mutation p.K377T 0.05 deleterious(0) probably_damaging(0.969) TCGA-BQ-5889-01 10 70775391 70775391 C T KIAA1279 Missense_Mutation p.A362V 0.07 tolerated(0.11) benign(0.091) TCGA-BQ-5889-01 10 90611458 90611458 A T ANKRD22 5'UTR 0.14 TCGA-BQ-5889-01 11 48152110 48152110 T C PTPRJ Missense_Mutation p.I486T 0.12 tolerated(0.49) benign(0.006) TCGA-BQ-5889-01 11 65480307 65480307 T A KAT5 Splice_Site p.X83_splice 0.05 TCGA-BQ-5889-01 11 67379406 67379406 C A NDUFV1 Missense_Mutation p.F373L 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BQ-5889-01 12 109939240 109939240 C T UBE3B Missense_Mutation p.R395W 0.15 deleterious(0) possibly_damaging(0.634) TCGA-BQ-5889-01 12 58016635 58016635 T C SLC26A10 Missense_Mutation p.I286T 0.12 deleterious(0) possibly_damaging(0.515) TCGA-BQ-5889-01 12 69759615 69759615 A C YEATS4 Missense_Mutation p.E95A 0.17 deleterious(0) probably_damaging(1) TCGA-BQ-5889-01 12 75436984 75436984 G T KCNC2 Silent p.G606G 0.07 TCGA-BQ-5889-01 13 20398872 20398872 T C ZMYM5 Silent p.K585K 0.11 TCGA-BQ-5889-01 13 24243093 24243093 A C TNFRSF19 Missense_Mutation p.N368H 0.08 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-BQ-5889-01 13 53042426 53042426 T A CKAP2 Missense_Mutation p.M498K 0.07 deleterious(0) benign(0.201) TCGA-BQ-5889-01 14 38723829 38723829 C T CLEC14A Missense_Mutation p.G467R 0.13 tolerated_low_confidence(0.61) benign(0.017) TCGA-BQ-5889-01 15 24923231 24923231 T A NPAP1 Silent p.T739T 0.09 TCGA-BQ-5889-01 15 28510872 28510872 T A HERC2 Missense_Mutation p.S588C 0.11 probably_damaging(0.986) TCGA-BQ-5889-01 15 43426530 43426530 A G TMEM62 Missense_Mutation p.I86V 0.09 tolerated(0.75) benign(0.005) TCGA-BQ-5889-01 15 91438758 91438758 G T FES Missense_Mutation p.E813D 0.07 tolerated(0.44) benign(0.018) TCGA-BQ-5889-01 16 2126139 2126139 T C TSC2 Missense_Mutation p.F904L 0.13 tolerated(0.1) benign(0.102) TCGA-BQ-5889-01 16 457438 457438 T G DECR2 Missense_Mutation p.L72R 0.06 deleterious(0) probably_damaging(1) TCGA-BQ-5889-01 17 1564455 1564455 A T PRPF8 Missense_Mutation p.V1447D 0.11 tolerated(0.07) possibly_damaging(0.493) TCGA-BQ-5889-01 17 45915217 45915217 T C SCRN2 Missense_Mutation p.Y424C 0.18 deleterious(0) probably_damaging(0.999) TCGA-BQ-5889-01 17 62290509 62290509 C T TEX2 Missense_Mutation p.G357S 0.11 tolerated(0.43) benign(0.038) TCGA-BQ-5889-01 17 7220554 7220554 G A NEURL4 Missense_Mutation p.A1485V 0.09 deleterious(0.04) benign(0.011) TCGA-BQ-5889-01 17 74307703 74307703 T - PRPSAP1 Frame_Shift_Del p.I360Ffs*47 0.11 TCGA-BQ-5889-01 17 8452026 8452026 T - MYH10 Frame_Shift_Del p.D334Ifs*12 0.08 TCGA-BQ-5889-01 19 8604865 8604865 T G MYO1F Missense_Mutation p.K553T 0.07 deleterious(0) probably_damaging(0.984) TCGA-BQ-5889-01 1 145439917 145439917 G A TXNIP Missense_Mutation p.D155N 0.10 tolerated(0.42) benign(0.206) TCGA-BQ-5889-01 1 156816378 156816378 G - INSRR Frame_Shift_Del p.T582Lfs*149 0.11 TCGA-BQ-5889-01 1 158912063 158912063 T G PYHIN1 Silent p.A292A 0.08 TCGA-BQ-5889-01 1 228491399 228491399 G A OBSCN Missense_Mutation p.D4588N 0.11 benign(0.441) TCGA-BQ-5889-01 1 238053765 238053765 A T ZP4 Silent p.A57A 0.09 TCGA-BQ-5889-01 1 28800653 28800653 A T PHACTR4 Missense_Mutation p.M481L 0.09 tolerated(0.41) benign(0.108) TCGA-BQ-5889-01 1 55077293 55077293 A C FAM151A Missense_Mutation p.F309C 0.06 deleterious(0) probably_damaging(0.954) TCGA-BQ-5889-01 1 85121610 85121610 G A SSX2IP Missense_Mutation p.L432F 0.09 tolerated(0.05) probably_damaging(0.973) TCGA-BQ-5889-01 20 24930141 24930141 C T CST7 5'UTR 0.08 TCGA-BQ-5889-01 20 55949867 55949867 C T RAE1 Intron 0.09 TCGA-BQ-5889-01 2 113404533 113404533 A T SLC20A1 Missense_Mutation p.D43V 0.10 deleterious(0) probably_damaging(1) TCGA-BQ-5889-01 2 113404573 113404573 A G SLC20A1 Silent p.V56V 0.07 TCGA-BQ-5889-01 2 128050232 128050232 T A ERCC3 Missense_Mutation p.K142M 0.12 deleterious(0.01) probably_damaging(0.964) TCGA-BQ-5889-01 2 234669022 234669022 T C UGT1A8 Intron 0.11 TCGA-BQ-5889-01 2 243056830 243056830 G A AC093642.5 RNA 0.11 TCGA-BQ-5889-01 2 36583678 36583678 C G CRIM1 Nonsense_Mutation p.Y81* 0.10 TCGA-BQ-5889-01 2 45647009 45647009 T C SRBD1 Missense_Mutation p.K692E 0.10 tolerated(0.05) probably_damaging(0.936) TCGA-BQ-5889-01 2 90248931 90248931 G C IGKV1D-43 Missense_Mutation p.R4S 0.05 deleterious(0.05) benign(0.131) TCGA-BQ-5889-01 2 99978207 99978207 A T EIF5B Silent p.V281V 0.08 TCGA-BQ-5889-01 3 111432757 111432757 C T PLCXD2 Silent p.P216P 0.13 TCGA-BQ-5889-01 3 169664290 169664290 T C RP11-379K17.4 RNA 0.08 TCGA-BQ-5889-01 3 3143448 3143448 G A IL5RA Missense_Mutation p.R99W 0.06 deleterious(0) probably_damaging(0.972) TCGA-BQ-5889-01 4 146076795 146076795 C A OTUD4 Missense_Mutation p.R180I 0.06 tolerated(0.05) benign(0.419) TCGA-BQ-5889-01 4 4276371 4276375 CTTCA - LYAR Frame_Shift_Del p.V184Efs*3 0.09 TCGA-BQ-5889-01 4 57842784 57842784 C A NOA1 Missense_Mutation p.G323V 0.05 deleterious(0) probably_damaging(1) TCGA-BQ-5889-01 4 9784079 9784079 C G DRD5 Missense_Mutation p.I142M 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-BQ-5889-01 5 10261751 10261751 T G CCT5 Missense_Mutation p.L358R 0.10 tolerated(0.23) benign(0.016) TCGA-BQ-5889-01 5 141033934 141033934 T C ARAP3 Silent p.P1406P 0.10 TCGA-BQ-5889-01 5 147781650 147781650 A G FBXO38 Missense_Mutation p.H123R 0.13 tolerated(0.46) benign(0.085) TCGA-BQ-5889-01 5 90052965 90052965 T A GPR98 Missense_Mutation p.F3976Y 0.09 probably_damaging(0.95) TCGA-BQ-5889-01 6 117241541 117241541 T C RFX6 Silent p.D417D 0.09 TCGA-BQ-5889-01 7 142562311 142562311 G T EPHB6 Silent p.G251G 0.15 TCGA-BQ-5889-01 7 1855740 1855740 G A MAD1L1 Missense_Mutation p.T708I 0.19 deleterious(0) probably_damaging(1) TCGA-BQ-5889-01 7 42004728 42004728 G T GLI3 Missense_Mutation p.Q1315K 0.06 tolerated_low_confidence(0.2) benign(0.013) TCGA-BQ-5889-01 7 93055856 93055856 A G CALCR Missense_Mutation p.W447R 0.11 deleterious(0.03) probably_damaging(0.971) TCGA-BQ-5889-01 8 28321296 28321296 T G FBXO16 Missense_Mutation p.T59P 0.11 tolerated(0.25) benign(0.163) TCGA-BQ-5889-01 8 82670792 82670792 T A CHMP4C 3'UTR 0.06 TCGA-BQ-5889-01 8 94935503 94935503 T A PDP1 Missense_Mutation p.L431I 0.08 tolerated(0.06) benign(0.364) TCGA-BQ-5889-01 9 115567070 115567071 - A SNX30 Frame_Shift_Ins p.N58Kfs*24 0.13 TCGA-BQ-5889-01 9 128117986 128117986 T A GAPVD1 Missense_Mutation p.L1301H 0.08 deleterious(0) probably_damaging(0.987) TCGA-BQ-5889-01 9 14307404 14307404 A T NFIB Missense_Mutation p.M49K 0.07 deleterious(0.03) possibly_damaging(0.769) TCGA-BQ-5889-01 9 35105253 35105253 C - FAM214B Frame_Shift_Del p.A528Pfs*99 0.10 TCGA-BQ-5889-01 X 101910683 101910683 G C GPRASP1 Silent p.G614G 0.15 TCGA-BQ-5889-01 X 154157883 154157883 C T F8 Silent p.T1394T 0.19 TCGA-BQ-5890-01 10 124351862 124351862 C A DMBT1 Silent p.R751R 0.32 TCGA-BQ-5890-01 10 63699986 63699986 A G ARID5B Silent p.E107E 0.34 TCGA-BQ-5890-01 11 21581738 21581738 T G NELL1 Missense_Mutation p.I597S 0.40 deleterious(0) possibly_damaging(0.899) TCGA-BQ-5890-01 11 2417109 2417109 G T CD81 Missense_Mutation p.C157F 0.42 deleterious(0) probably_damaging(0.982) TCGA-BQ-5890-01 11 26742996 26742996 A T SLC5A12 Missense_Mutation p.L89Q 0.43 tolerated(0.21) benign(0.131) TCGA-BQ-5890-01 11 63884401 63884401 T A FLRT1 Missense_Mutation p.L221H 0.27 deleterious(0) probably_damaging(0.999) TCGA-BQ-5890-01 11 67265787 67265787 G A PITPNM1 Silent p.S497S 0.32 TCGA-BQ-5890-01 12 106460987 106460987 G T NUAK1 Missense_Mutation p.H527N 0.41 deleterious(0.04) probably_damaging(0.991) TCGA-BQ-5890-01 12 130648407 130648407 C A FZD10 Missense_Mutation p.T307N 0.32 deleterious(0) probably_damaging(0.999) TCGA-BQ-5890-01 12 75441966 75441966 A C KCNC2 Missense_Mutation p.Y583D 0.38 deleterious_low_confidence(0.03) benign(0.389) TCGA-BQ-5890-01 12 977170 977170 C T WNK1 Intron 0.05 TCGA-BQ-5890-01 13 25352542 25352542 T C RNF17 Silent p.L143L 0.31 TCGA-BQ-5890-01 15 75981607 75981607 C T CSPG4 Missense_Mutation p.G600D 0.45 deleterious(0.05) benign(0.097) TCGA-BQ-5890-01 15 94884070 94884070 G T MCTP2 Missense_Mutation p.D296Y 0.44 deleterious(0) probably_damaging(0.993) TCGA-BQ-5890-01 16 23083424 23083424 G T USP31 Silent p.T810T 0.08 TCGA-BQ-5890-01 16 2868724 2868724 C G PRSS21 Missense_Mutation p.Q102E 0.19 tolerated(1) benign(0.011) TCGA-BQ-5890-01 16 3487524 3487524 G C ZNF597 Missense_Mutation p.P59A 0.61 tolerated(0.72) benign(0.001) TCGA-BQ-5890-01 16 56792502 56792502 T C NUP93 Silent p.L78L 0.35 TCGA-BQ-5890-01 16 67942644 67942644 G A PSKH1 5'UTR 0.29 TCGA-BQ-5890-01 16 69368791 69368791 C G COG8 Missense_Mutation p.C349S 0.36 deleterious(0) possibly_damaging(0.705) TCGA-BQ-5890-01 16 74442845 74442845 C A CLEC18B 3'UTR 0.19 TCGA-BQ-5890-01 16 89294017 89294017 C T ZNF778 Nonsense_Mutation p.R413* 0.28 TCGA-BQ-5890-01 16 90015887 90015887 C A DEF8 Missense_Mutation p.S5Y 0.35 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-BQ-5890-01 17 45753779 45753779 G T KPNB1 Missense_Mutation p.L639F 0.28 deleterious(0) possibly_damaging(0.872) TCGA-BQ-5890-01 17 62121548 62121548 G A ERN1 Missense_Mutation p.R912W 0.35 deleterious(0) probably_damaging(0.975) TCGA-BQ-5890-01 17 66981100 66981100 G A ABCA9 Silent p.I1435I 0.16 TCGA-BQ-5890-01 17 67170778 67170778 G T ABCA10 Missense_Mutation p.F1006L 0.30 tolerated(0.56) benign(0.001) TCGA-BQ-5890-01 17 7755372 7755372 T G KDM6B Silent p.A1423A 0.29 TCGA-BQ-5890-01 17 80050833 80050833 G A FASN Missense_Mutation p.R240W 0.38 deleterious(0) benign(0.038) TCGA-BQ-5890-01 19 49379135 49379135 G A PPP1R15A Missense_Mutation p.V644I 0.33 tolerated(0.69) unknown(0) TCGA-BQ-5890-01 19 58018434 58018434 T C ZNF773 Missense_Mutation p.V324A 0.25 tolerated(0.06) possibly_damaging(0.549) TCGA-BQ-5890-01 19 58437999 58437999 T C ZNF418 Missense_Mutation p.K517R 0.39 deleterious(0.05) probably_damaging(0.949) TCGA-BQ-5890-01 19 8922351 8922351 G C ZNF558 Missense_Mutation p.A272G 0.34 deleterious(0.02) possibly_damaging(0.887) TCGA-BQ-5890-01 1 161185157 161185157 G T FCER1G Missense_Mutation p.A16S 0.31 tolerated(0.11) possibly_damaging(0.855) TCGA-BQ-5890-01 1 161487871 161487871 C A FCGR2A Missense_Mutation p.P296H 0.35 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-BQ-5890-01 1 17322884 17322884 G T ATP13A2 Missense_Mutation p.L435M 0.42 deleterious(0) probably_damaging(0.961) TCGA-BQ-5890-01 1 199996860 199996860 G A NR5A2 5'UTR 0.24 TCGA-BQ-5890-01 1 201030589 201030589 A G CACNA1S Missense_Mutation p.Y1021H 0.20 deleterious(0.02) probably_damaging(1) TCGA-BQ-5890-01 1 201781618 201781618 G T NAV1 Nonsense_Mutation p.E1684* 0.47 TCGA-BQ-5890-01 1 204236626 204236626 T A PLEKHA6 Missense_Mutation p.D86V 0.31 deleterious(0) probably_damaging(1) TCGA-BQ-5890-01 1 233518317 233518317 A G MLK4 Missense_Mutation p.R991G 0.26 tolerated(0.1) probably_damaging(0.931) TCGA-BQ-5890-01 1 235599915 235599915 A C TBCE Missense_Mutation p.I319L 0.19 tolerated(0.09) possibly_damaging(0.463) TCGA-BQ-5890-01 1 2540842 2540842 C T MMEL1 Silent p.S157S 0.17 TCGA-BQ-5890-01 1 33150060 33150060 A G RBBP4 3'UTR 0.29 TCGA-BQ-5890-01 1 891312 891312 T G NOC2L Missense_Mutation p.D230A 0.83 deleterious(0.03) benign(0.053) TCGA-BQ-5890-01 20 43726464 43726464 A T KCNS1 Missense_Mutation p.Y317N 0.50 deleterious(0) probably_damaging(1) TCGA-BQ-5890-01 20 44108666 44108666 G A WFDC2 Missense_Mutation p.C103Y 0.40 deleterious(0) probably_damaging(1) TCGA-BQ-5890-01 20 44424050 44424050 A G DNTTIP1 Missense_Mutation p.I114V 0.44 tolerated(0.25) benign(0.132) TCGA-BQ-5890-01 20 5919003 5919003 G T TRMT6 3'UTR 0.25 TCGA-BQ-5890-01 20 60714841 60714841 T G PSMA7 Missense_Mutation p.K115T 0.35 deleterious(0) probably_damaging(0.922) TCGA-BQ-5890-01 20 62642772 62642772 G C PRPF6 Silent p.T480T 0.25 TCGA-BQ-5890-01 20 8741054 8741054 G T PLCB1 Missense_Mutation p.G886V 0.31 tolerated(0.07) benign(0.165) TCGA-BQ-5890-01 21 34925625 34925625 C T SON Missense_Mutation p.S1363L 0.25 benign(0.32) TCGA-BQ-5890-01 21 45710878 45710878 C T AIRE Intron 0.44 TCGA-BQ-5890-01 2 109400408 109400408 G C RANBP2 3'UTR 0.30 TCGA-BQ-5890-01 2 121991738 121991738 C T TFCP2L1 Missense_Mutation p.C376Y 0.37 deleterious(0.02) benign(0.424) TCGA-BQ-5890-01 2 215880304 215880304 G T ABCA12 Nonsense_Mutation p.C622* 0.06 TCGA-BQ-5890-01 2 220039577 220039577 T G CNPPD1 Missense_Mutation p.N145H 0.32 deleterious(0) probably_damaging(0.988) TCGA-BQ-5890-01 2 241808770 241808770 G A AGXT Missense_Mutation p.E117K 0.39 tolerated(0.42) benign(0.012) TCGA-BQ-5890-01 2 242065794 242065794 G A PASK Missense_Mutation p.H846Y 0.35 tolerated(1) benign(0.001) TCGA-BQ-5890-01 2 28847964 28847964 A C PLB1 Missense_Mutation p.K1190Q 0.30 deleterious(0.01) probably_damaging(0.97) TCGA-BQ-5890-01 3 12192767 12192767 C T TIMP4 3'Flank 0.62 TCGA-BQ-5890-01 3 132410108 132410108 T C NPHP3 Missense_Mutation p.E833G 0.55 tolerated(0.05) benign(0.075) TCGA-BQ-5890-01 3 44763320 44763320 C G ZNF502 Missense_Mutation p.N337K 0.67 tolerated(0.22) probably_damaging(0.95) TCGA-BQ-5890-01 3 47032943 47032943 G T NBEAL2 Silent p.L230L 0.76 TCGA-BQ-5890-01 3 47143047 47143047 T C SETD2 Splice_Site p.X1640_splice 0.74 TCGA-BQ-5890-01 3 52696272 52696272 T - PBRM1 Frame_Shift_Del p.A136Pfs*38 0.43 TCGA-BQ-5890-01 4 111119479 111119479 C A ELOVL6 Missense_Mutation p.V5L 0.32 tolerated(0.33) benign(0.001) TCGA-BQ-5890-01 4 143181690 143181690 G T INPP4B Missense_Mutation p.P215T 0.30 tolerated(0.74) benign(0.012) TCGA-BQ-5890-01 4 153691640 153691640 C T TIGD4 Missense_Mutation p.D173N 0.33 deleterious(0.02) benign(0.075) TCGA-BQ-5890-01 4 186545113 186545113 G A SORBS2 Silent p.H586H 0.40 TCGA-BQ-5890-01 4 186545114 186545114 T G SORBS2 Missense_Mutation p.H586P 0.41 tolerated(0.07) benign(0) TCGA-BQ-5890-01 4 4436571 4436571 C T STX18 Missense_Mutation p.E210K 0.23 tolerated(0.41) benign(0.001) TCGA-BQ-5890-01 4 69185877 69185877 T C YTHDC1 Missense_Mutation p.R550G 0.31 deleterious(0.01) possibly_damaging(0.637) TCGA-BQ-5890-01 5 136975648 136975648 C T KLHL3 Missense_Mutation p.G308S 0.22 deleterious(0.03) probably_damaging(0.967) TCGA-BQ-5890-01 5 137289855 137289855 C G FAM13B Missense_Mutation p.R551T 0.19 deleterious(0) probably_damaging(0.997) TCGA-BQ-5890-01 5 161281260 161281260 G A GABRA1 Silent p.L57L 0.18 TCGA-BQ-5890-01 5 41048530 41048530 C T MROH2B Missense_Mutation p.G527E 0.50 deleterious(0) probably_damaging(0.999) TCGA-BQ-5890-01 5 72743507 72743507 G A FOXD1 Silent p.L227L 0.12 TCGA-BQ-5890-01 6 132206107 132206107 A C ENPP1 Missense_Mutation p.K783T 0.37 deleterious(0.03) benign(0.057) TCGA-BQ-5890-01 6 138200458 138200458 C A TNFAIP3 Missense_Mutation p.L626M 0.56 deleterious(0.02) probably_damaging(1) TCGA-BQ-5890-01 6 35213120 35213120 G A SCUBE3 Silent p.K839K 0.33 TCGA-BQ-5890-01 6 42932546 42932546 C T PEX6 Missense_Mutation p.V930I 0.37 tolerated(0.63) benign(0.006) TCGA-BQ-5890-01 6 51882414 51882414 G A PKHD1 Silent p.F1798F 0.39 TCGA-BQ-5890-01 7 102110042 102110042 T G LRWD1 Missense_Mutation p.I417S 0.19 deleterious(0) probably_damaging(0.996) TCGA-BQ-5890-01 7 102110043 102110043 C A LRWD1 Silent p.I417I 0.20 TCGA-BQ-5890-01 7 27140389 27140390 - A HOXA2 Frame_Shift_Ins p.T363Yfs*58 0.16 TCGA-BQ-5890-01 8 121219275 121219276 - A COL14A1 Frame_Shift_Ins p.N379Kfs*39 0.23 TCGA-BQ-5890-01 8 24357759 24357759 A C ADAM7 Missense_Mutation p.L664F 0.37 tolerated(0.16) benign(0.023) TCGA-BQ-5890-01 8 24357760 24357760 C A ADAM7 Missense_Mutation p.H665N 0.37 tolerated(0.85) benign(0) TCGA-BQ-5890-01 8 3216707 3216707 G A CSMD1 Missense_Mutation p.R1091C 0.29 probably_damaging(0.969) TCGA-BQ-5890-01 8 41906580 41906586 GGAGGCT - KAT6A 5'UTR 0.35 TCGA-BQ-5890-01 9 113013695 113013695 T C TXN Silent p.V24V 0.25 TCGA-BQ-5890-01 9 116078978 116078978 A G WDR31 3'UTR 0.41 TCGA-BQ-5890-01 9 129143362 129143362 G C MVB12B Missense_Mutation p.G75A 0.31 deleterious(0.03) possibly_damaging(0.575) TCGA-BQ-5890-01 9 139617402 139617402 C A FAM69B Intron 0.37 TCGA-BQ-5890-01 9 84608073 84608073 T G SPATA31D1 Missense_Mutation p.S896R 0.40 deleterious(0.01) benign(0.306) TCGA-BQ-5890-01 X 123200037 123200037 T C STAG2 Silent p.L703L 0.64 TCGA-BQ-5891-01 10 108427534 108427534 T C SORCS1 Missense_Mutation p.N739S 0.94 tolerated(0.78) benign(0.02) TCGA-BQ-5891-01 11 117866403 117866403 G A IL10RA Missense_Mutation p.R263Q 0.51 tolerated(0.34) benign(0.097) TCGA-BQ-5891-01 11 5068288 5068288 A T OR52J3 Missense_Mutation p.H178L 0.96 deleterious(0) probably_damaging(1) TCGA-BQ-5891-01 13 22088516 22088516 C T MICU2 Silent p.V213V 0.09 TCGA-BQ-5891-01 13 33591068 33591068 G C KL Missense_Mutation p.V164L 0.41 tolerated(0.2) benign(0.008) TCGA-BQ-5891-01 13 33591076 33591076 C T KL Silent p.N166N 0.31 TCGA-BQ-5891-01 16 67840335 67840335 C T RANBP10 Silent p.L35L 0.29 TCGA-BQ-5891-01 17 19861611 19861611 A G AKAP10 Missense_Mutation p.F198S 0.48 tolerated(0.6) benign(0.003) TCGA-BQ-5891-01 17 45490253 45490253 A G EFCAB13 Missense_Mutation p.N798S 0.22 tolerated(0.53) benign(0.001) TCGA-BQ-5891-01 17 54230835 54230835 C T ANKFN1 5'Flank 0.04 TCGA-BQ-5891-01 17 7129055 7129055 A G DVL2 3'UTR 0.33 TCGA-BQ-5891-01 19 53958709 53958709 T A ZNF761 RNA 0.85 TCGA-BQ-5891-01 19 53958711 53958711 G A ZNF761 RNA 0.85 TCGA-BQ-5891-01 19 9065718 9065718 G T MUC16 Missense_Mutation p.S7243Y 0.07 unknown(0) TCGA-BQ-5891-01 20 23967129 23967129 C T GGTLC1 Silent p.L40L 0.58 TCGA-BQ-5891-01 21 19685347 19685347 T G TMPRSS15 Silent p.R694R 0.93 TCGA-BQ-5891-01 21 45732008 45732008 C T PFKL Silent p.S86S 1.00 TCGA-BQ-5891-01 22 19870863 19870863 A T TXNRD2 Silent p.I357I 0.86 TCGA-BQ-5891-01 22 21989095 21989095 C G CCDC116 Nonsense_Mutation p.S248* 0.04 TCGA-BQ-5891-01 2 141643776 141643776 G C LRP1B Missense_Mutation p.Q1299E 0.83 benign(0.042) TCGA-BQ-5891-01 2 153591621 153591621 C T ARL6IP6 Missense_Mutation p.L190F 0.04 tolerated(0.11) possibly_damaging(0.698) TCGA-BQ-5891-01 2 186671400 186671400 T C FSIP2 Silent p.D5878D 0.97 TCGA-BQ-5891-01 2 211057526 211057527 AC G ACADL Splice_Site p.X400_splice 0.50 TCGA-BQ-5891-01 2 61709536 61709536 G A XPO1 Missense_Mutation p.S984L 0.08 deleterious(0.02) benign(0.015) TCGA-BQ-5891-01 3 179304341 179304341 G A ACTL6A Missense_Mutation p.R377Q 0.86 deleterious(0) possibly_damaging(0.819) TCGA-BQ-5891-01 3 46415326 46415326 C T CCR5 Silent p.F311F 0.03 TCGA-BQ-5891-01 3 47162849 47162850 TT - SETD2 Frame_Shift_Del p.S1093Lfs*2 0.52 TCGA-BQ-5891-01 3 8809676 8809676 G A OXTR Silent p.T66T 0.20 TCGA-BQ-5891-01 5 136963990 136963990 G A KLHL3 Silent p.N529N 0.36 TCGA-BQ-5891-01 5 140711928 140711928 G A PCDHGA1 Silent p.A559A 0.48 TCGA-BQ-5891-01 5 174870046 174870046 G A DRD1 Silent p.D19D 0.39 TCGA-BQ-5891-01 6 27440077 27440077 A C ZNF184 5'UTR 0.90 TCGA-BQ-5891-01 6 42657391 42657391 G A UBR2 Silent p.E1703E 0.90 TCGA-BQ-5891-01 6 83862077 83862077 A G DOPEY1 Silent p.L2040L 0.05 TCGA-BQ-5891-01 6 99930682 99930682 C A USP45 Missense_Mutation p.E264D 0.92 tolerated(0.08) benign(0.341) TCGA-BQ-5891-01 7 128587532 128587532 C T IRF5 Missense_Mutation p.P244S 0.42 tolerated(0.1) possibly_damaging(0.547) TCGA-BQ-5891-01 9 104125282 104125282 C T BAAT Missense_Mutation p.V229I 0.38 tolerated(1) benign(0.015) TCGA-BQ-5892-01 10 128193076 128193076 C G C10orf90 Missense_Mutation p.E231D 0.24 tolerated(0.05) benign(0.005) TCGA-BQ-5892-01 11 47653227 47653227 G - MTCH2 Frame_Shift_Del p.L136Sfs*8 0.31 TCGA-BQ-5892-01 11 47819410 47819410 A C NUP160 Silent p.A1070A 0.23 TCGA-BQ-5892-01 11 55371448 55371448 C A OR4C11 Missense_Mutation p.M134I 0.05 deleterious(0.02) benign(0.259) TCGA-BQ-5892-01 11 6190974 6190974 T A OR52B2 Missense_Mutation p.T195S 0.20 tolerated(1) possibly_damaging(0.654) TCGA-BQ-5892-01 12 12974592 12974592 T C DDX47 Missense_Mutation p.V125A 0.34 deleterious(0.03) possibly_damaging(0.721) TCGA-BQ-5892-01 12 48866684 48866684 C T ANP32D Silent p.G79G 0.34 TCGA-BQ-5892-01 14 21862522 21862522 T - CHD8 Frame_Shift_Del p.K1838Rfs*53 0.26 TCGA-BQ-5892-01 14 55818351 55818351 C G FBXO34 Missense_Mutation p.P415A 0.26 deleterious(0.03) benign(0.002) TCGA-BQ-5892-01 14 70238167 70238167 A G SRSF5 Missense_Mutation p.S270G 0.14 tolerated_low_confidence(0.83) benign(0.184) TCGA-BQ-5892-01 14 95562982 95562982 C A DICER1 Missense_Mutation p.E1425D 0.38 tolerated_low_confidence(0.33) benign(0.009) TCGA-BQ-5892-01 16 1552985 1552985 G T TELO2 Missense_Mutation p.Q608H 0.11 deleterious(0.03) possibly_damaging(0.844) TCGA-BQ-5892-01 16 58580300 58580300 T G CNOT1 Missense_Mutation p.N1311H 0.27 tolerated(0.16) benign(0.001) TCGA-BQ-5892-01 16 74729257 74729257 C G MLKL Missense_Mutation p.W133C 0.17 tolerated(0.44) benign(0.093) TCGA-BQ-5892-01 17 30932193 30932193 C T MYO1D Missense_Mutation p.D926N 0.18 deleterious(0) probably_damaging(0.99) TCGA-BQ-5892-01 17 34853996 34853996 A T ZNHIT3 3'Flank 0.22 TCGA-BQ-5892-01 17 42289818 42289818 G C UBTF Missense_Mutation p.T222S 0.25 tolerated(1) benign(0.129) TCGA-BQ-5892-01 17 45901623 45901623 G A MRPL10 Missense_Mutation p.S255F 0.47 deleterious(0) benign(0.405) TCGA-BQ-5892-01 17 6597517 6597517 C G SLC13A5 Splice_Site p.X352_splice 0.25 TCGA-BQ-5892-01 17 9846496 9846496 G A GAS7 Nonsense_Mutation p.Q225* 0.05 TCGA-BQ-5892-01 19 12384693 12384693 G C ZNF44 Missense_Mutation p.T174S 0.28 tolerated(0.28) benign(0.164) TCGA-BQ-5892-01 19 422226 422226 T C SHC2 Missense_Mutation p.T514A 0.27 deleterious(0) probably_damaging(0.994) TCGA-BQ-5892-01 19 44636328 44636328 T - ZNF225 Frame_Shift_Del p.F521Lfs*17 0.10 TCGA-BQ-5892-01 19 58774085 58774085 G A ZNF544 Missense_Mutation p.V705M 0.27 tolerated(0.05) benign(0.126) TCGA-BQ-5892-01 19 7960603 7960603 G - LRRC8E Frame_Shift_Del p.V40Sfs*8 0.21 TCGA-BQ-5892-01 19 9046479 9046479 C G MUC16 Missense_Mutation p.V11718L 0.27 benign(0.001) TCGA-BQ-5892-01 19 9085838 9085838 C A MUC16 Nonsense_Mutation p.E1993* 0.06 TCGA-BQ-5892-01 1 110741226 110741226 T A SLC6A17 3'UTR 0.25 TCGA-BQ-5892-01 1 171247924 171247924 A T FMO1 Missense_Mutation p.I181L 0.32 tolerated(0.3) benign(0.015) TCGA-BQ-5892-01 1 172558217 172558217 T G SUCO Missense_Mutation p.L659R 0.34 tolerated(0.54) benign(0.003) TCGA-BQ-5892-01 1 182921876 182921876 C T SHCBP1L Silent p.L131L 0.24 TCGA-BQ-5892-01 1 200973948 200973948 C A KIF21B Silent p.R282R 0.29 TCGA-BQ-5892-01 1 205053045 205053045 A C TMEM81 Missense_Mutation p.F135C 0.23 deleterious(0) probably_damaging(0.994) TCGA-BQ-5892-01 1 24840967 24840967 T - RCAN3 Frame_Shift_Del p.L36Wfs*4 0.16 TCGA-BQ-5892-01 1 29475685 29475685 C T SRSF4 Missense_Mutation p.R241Q 0.10 tolerated(0.08) benign(0.238) TCGA-BQ-5892-01 1 35223072 35223072 C A GJB5 Missense_Mutation p.D47E 0.06 tolerated(1) benign(0.162) TCGA-BQ-5892-01 1 43317094 43317094 C A ZNF691 Silent p.L186L 0.22 TCGA-BQ-5892-01 1 65143946 65143946 G A CACHD1 Missense_Mutation p.G1015E 0.07 deleterious(0) probably_damaging(0.999) TCGA-BQ-5892-01 20 10625851 10625851 C T JAG1 Missense_Mutation p.E723K 0.31 tolerated(0.65) benign(0.006) TCGA-BQ-5892-01 20 34064377 34064378 - T CEP250 Frame_Shift_Ins p.L608Ffs*5 0.29 TCGA-BQ-5892-01 21 34918555 34918555 T G SON Missense_Mutation p.N38K 0.34 benign(0.403) TCGA-BQ-5892-01 21 34922861 34922861 T G SON Missense_Mutation p.S442A 0.28 benign(0.097) TCGA-BQ-5892-01 21 39775557 39775557 C T ERG Missense_Mutation p.V162I 0.09 tolerated(0.59) benign(0.13) TCGA-BQ-5892-01 22 21975858 21975858 G C UBE2L3 Missense_Mutation p.R180P 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-BQ-5892-01 2 175346653 175346657 GTTAA - GPR155 Frame_Shift_Del p.L10Hfs*18 0.34 TCGA-BQ-5892-01 2 18767651 18767651 G C NT5C1B Missense_Mutation p.Q103E 0.12 deleterious_low_confidence(0) benign(0.234) TCGA-BQ-5892-01 2 207827299 207827299 C T CPO Silent p.Y246Y 0.06 TCGA-BQ-5892-01 3 10191506 10191506 C G VHL Missense_Mutation p.R167G 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-BQ-5892-01 3 52443866 52443866 C T BAP1 Missense_Mutation p.S10N 0.51 deleterious(0) probably_damaging(0.998) TCGA-BQ-5892-01 4 113333046 113333046 G A ALPK1 Missense_Mutation p.V114M 0.18 tolerated(0.37) benign(0.003) TCGA-BQ-5892-01 4 123128292 123128292 G C KIAA1109 Missense_Mutation p.S509T 0.24 benign(0.101) TCGA-BQ-5892-01 4 41015603 41015603 T A APBB2 Missense_Mutation p.T278S 0.27 tolerated(0.32) benign(0.02) TCGA-BQ-5892-01 4 68777129 68777129 C T TMPRSS11A Silent p.K399K 0.04 TCGA-BQ-5892-01 5 133956720 133956720 T - SAR1B Frame_Shift_Del p.K27Nfs*19 0.21 TCGA-BQ-5892-01 5 179192969 179192987 GGGTCTGCAGGGCAGACCT - MAML1 Frame_Shift_Del p.G320Ffs*9 0.37 TCGA-BQ-5892-01 5 43280172 43280172 A G NIM1K Missense_Mutation p.S218G 0.31 deleterious(0) probably_damaging(1) TCGA-BQ-5892-01 5 70800508 70800508 C T BDP1 Nonsense_Mutation p.Q768* 0.30 TCGA-BQ-5892-01 6 131949337 131949337 C G MED23 5'UTR 0.33 TCGA-BQ-5892-01 6 25701539 25701539 T C SCGN Silent p.C269C 0.29 TCGA-BQ-5892-01 6 31937328 31937328 G A SKIV2L Missense_Mutation p.E1193K 0.26 deleterious(0) probably_damaging(1) TCGA-BQ-5892-01 6 4128067 4128067 T A ECI2 Splice_Site p.X168_splice 0.28 TCGA-BQ-5892-01 7 100087003 100087003 C T NYAP1 Silent p.A553A 0.24 TCGA-BQ-5892-01 7 107580801 107580801 A G LAMB1 Missense_Mutation p.C1132R 0.05 deleterious(0) probably_damaging(1) TCGA-BQ-5892-01 7 122130209 122130210 - A CADPS2 Frame_Shift_Ins p.Y593Lfs*2 0.23 TCGA-BQ-5892-01 7 134363602 134363602 C T BPGM Intron 0.24 TCGA-BQ-5892-01 7 75052401 75052401 C - POM121C Frame_Shift_Del p.P379Rfs*21 0.10 TCGA-BQ-5892-01 8 126021238 126021238 T - SQLE Frame_Shift_Del p.A284Qfs*28 0.19 TCGA-BQ-5892-01 8 22473664 22473664 C T CCAR2 Missense_Mutation p.A583V 0.29 tolerated(0.27) benign(0) TCGA-BQ-5892-01 8 30704070 30704070 T C TEX15 Missense_Mutation p.I822V 0.10 tolerated(0.2) benign(0.005) TCGA-BQ-5892-01 8 39604144 39604144 C T ADAM2 Missense_Mutation p.R674H 0.17 tolerated(0.13) benign(0.013) TCGA-BQ-5892-01 8 42940435 42940435 G A FNTA 3'UTR 0.11 TCGA-BQ-5892-01 9 40705657 40705657 C T SPATA31A3 Missense_Mutation p.P1105L 0.53 tolerated(0.18) probably_damaging(0.991) TCGA-BQ-5892-01 9 77286722 77286722 G A RORB Missense_Mutation p.E377K 0.33 deleterious(0.02) benign(0.176) TCGA-BQ-5892-01 X 129045744 129045744 C T UTP14A Silent p.I128I 0.62 TCGA-BQ-5892-01 X 13337247 13337248 TG - ATXN3L Frame_Shift_Del p.T269Ifs*19 0.44 TCGA-BQ-5893-01 10 45799786 45799786 C T OR13A1 Missense_Mutation p.E29K 0.47 deleterious(0.04) benign(0.046) TCGA-BQ-5893-01 10 72517740 72517740 G T ADAMTS14 Missense_Mutation p.G990V 0.33 deleterious(0) probably_damaging(0.989) TCGA-BQ-5893-01 10 93667890 93667890 C T FGFBP3 3'UTR 0.58 TCGA-BQ-5893-01 11 43380551 43380551 G A TTC17 Missense_Mutation p.C16Y 0.50 tolerated_low_confidence(0.24) benign(0.013) TCGA-BQ-5893-01 11 7618800 7618800 C G PPFIBP2 Missense_Mutation p.L128V 0.47 deleterious(0) benign(0.257) TCGA-BQ-5893-01 11 85714416 85714416 C A PICALM Missense_Mutation p.A296S 0.27 tolerated(0.21) benign(0.119) TCGA-BQ-5893-01 12 104721450 104721453 GTGA - TXNRD1 Splice_Site p.X514_splice 0.39 TCGA-BQ-5893-01 13 24825881 24825881 C A SPATA13 Missense_Mutation p.A682D 0.39 deleterious(0) possibly_damaging(0.747) TCGA-BQ-5893-01 13 26620708 26620708 C G SHISA2 Missense_Mutation p.Q277H 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-BQ-5893-01 15 65983020 65983020 C T DENND4A Silent p.V1303V 0.28 TCGA-BQ-5893-01 15 75692465 75692465 C T SIN3A Silent p.S590S 0.35 TCGA-BQ-5893-01 16 10992850 10992850 C A CIITA Missense_Mutation p.Q143K 0.20 tolerated(0.12) benign(0.059) TCGA-BQ-5893-01 16 89349917 89349917 C G ANKRD11 Missense_Mutation p.K1011N 0.58 possibly_damaging(0.603) TCGA-BQ-5893-01 17 18082124 18082124 C A MYO15A Missense_Mutation p.N3511K 0.56 unknown(0) TCGA-BQ-5893-01 17 6946933 6946933 C A SLC16A11 5'UTR 0.11 TCGA-BQ-5893-01 18 59888685 59888685 C T KIAA1468 Silent p.N271N 0.29 TCGA-BQ-5893-01 19 33503622 33503622 G C RHPN2 Missense_Mutation p.I133M 0.45 deleterious(0) probably_damaging(0.945) TCGA-BQ-5893-01 19 34832921 34832921 G A KIAA0355 Silent p.L694L 0.31 TCGA-BQ-5893-01 19 36230750 36230750 G C IGFLR1 Silent p.A194A 0.43 TCGA-BQ-5893-01 19 40884144 40884144 C T PLD3 3'UTR 0.33 TCGA-BQ-5893-01 19 42893120 42893120 A G CNFN Missense_Mutation p.W24R 0.59 deleterious(0) probably_damaging(0.996) TCGA-BQ-5893-01 19 46280763 46280763 G A DMPK Missense_Mutation p.T333I 0.42 tolerated(0.5) benign(0.002) TCGA-BQ-5893-01 19 54385815 54385815 G T PRKCG Missense_Mutation p.G23W 0.46 deleterious(0) probably_damaging(0.999) TCGA-BQ-5893-01 19 55239373 55239373 G A KIR3DL3 Missense_Mutation p.V218I 0.32 tolerated(0.13) benign(0.001) TCGA-BQ-5893-01 1 171501662 171501662 A C PRRC2C Silent p.R477R 1.00 TCGA-BQ-5893-01 1 173505010 173505010 G T SLC9C2 Missense_Mutation p.F578L 0.25 tolerated(0.62) benign(0.004) TCGA-BQ-5893-01 1 247835611 247835611 C G OR13G1 Missense_Mutation p.V245L 0.25 deleterious(0) probably_damaging(0.997) TCGA-BQ-5893-01 1 65344759 65344759 C T JAK1 Missense_Mutation p.R93H 0.51 tolerated(1) benign(0) TCGA-BQ-5893-01 1 99150445 99150445 C A SNX7 Missense_Mutation p.A62D 0.35 deleterious_low_confidence(0.04) benign(0.386) TCGA-BQ-5893-01 3 39149269 39149269 C T GORASP1 5'UTR 0.24 TCGA-BQ-5893-01 4 79531260 79531260 A T ANXA3 Silent p.G321G 0.48 TCGA-BQ-5893-01 5 140476195 140476195 G T PCDHB2 Missense_Mutation p.Q607H 0.20 deleterious(0.02) probably_damaging(0.964) TCGA-BQ-5893-01 5 145533344 145533344 C T LARS Missense_Mutation p.D395N 0.48 deleterious(0) probably_damaging(0.986) TCGA-BQ-5893-01 5 148730749 148730749 C T GRPEL2 Silent p.T194T 0.37 TCGA-BQ-5893-01 5 32789367 32789367 C T NPR3 3'UTR 0.29 TCGA-BQ-5893-01 5 74712823 74712828 TACCAT - COL4A3BP In_Frame_Del p.N365_G366del 0.45 TCGA-BQ-5893-01 6 147830100 147830100 G A SAMD5 Silent p.A12A 0.17 TCGA-BQ-5893-01 6 30867669 30867669 C T DDR1 3'UTR 0.56 TCGA-BQ-5893-01 7 144245631 144245631 C A TPK1 Missense_Mutation p.G189V 0.45 deleterious(0) probably_damaging(1) TCGA-BQ-5893-01 7 149318520 149318520 G T ZNF767 RNA 0.46 TCGA-BQ-5893-01 7 151845739 151845739 C A KMT2C Missense_Mutation p.D4425Y 0.43 probably_damaging(0.999) TCGA-BQ-5893-01 7 47970797 47970797 G A PKD1L1 Missense_Mutation p.T214M 0.31 tolerated(0.11) benign(0.002) TCGA-BQ-5893-01 8 113249531 113249531 G T CSMD3 Nonsense_Mutation p.Y3505* 0.37 TCGA-BQ-5893-01 8 113249566 113249566 C A CSMD3 Missense_Mutation p.V3494L 0.32 deleterious(0) benign(0.023) TCGA-BQ-5893-01 8 142186773 142186773 C T DENND3 Silent p.F793F 0.43 TCGA-BQ-5893-01 8 144809117 144809117 G C FAM83H Silent p.A838A 0.35 TCGA-BQ-5893-01 8 2044224 2044224 A G MYOM2 Missense_Mutation p.K755E 0.31 tolerated(1) benign(0.155) TCGA-BQ-5893-01 8 25766022 25766022 C A EBF2 Missense_Mutation p.A201S 0.44 deleterious(0.02) probably_damaging(0.919) TCGA-BQ-5893-01 8 59059734 59059734 C T FAM110B Silent p.S315S 0.40 TCGA-BQ-5893-01 8 67477040 67477040 T A MYBL1 Silent p.T717T 0.40 TCGA-BQ-5893-01 9 113141740 113141740 T C SVEP1 Missense_Mutation p.Y3432C 0.48 probably_damaging(0.976) TCGA-BQ-5893-01 9 125391500 125391500 G A OR1B1 Silent p.F105F 0.38 TCGA-BQ-5893-01 9 2110312 2110312 C T SMARCA2 Silent p.S1117S 0.28 TCGA-BQ-5893-01 9 84607771 84607771 G T SPATA31D1 Missense_Mutation p.D796Y 0.36 tolerated(0.08) probably_damaging(0.984) TCGA-BQ-5893-01 X 129173153 129173154 - CTGG BCORL1 Frame_Shift_Ins p.L1508Afs*34 0.71 TCGA-BQ-5893-01 X 20152121 20152121 C A EIF1AX Missense_Mutation p.W70L 0.59 tolerated(0.06) probably_damaging(0.998) TCGA-BQ-5893-01 X 41555435 41555435 T A GPR34 Silent p.L183L 0.83 TCGA-BQ-5894-01 10 102750271 102750271 G T C10orf2 Missense_Mutation p.M521I 0.32 deleterious(0) benign(0.444) TCGA-BQ-5894-01 10 114205268 114205268 G T ZDHHC6 5'UTR 0.24 TCGA-BQ-5894-01 10 17747670 17747670 T A STAM Missense_Mutation p.M380K 0.28 tolerated(0.08) benign(0.028) TCGA-BQ-5894-01 11 101868476 101868476 C T KIAA1377 3'UTR 0.15 TCGA-BQ-5894-01 11 116633298 116633298 A G BUD13 Missense_Mutation p.F336S 0.31 tolerated(0.46) benign(0.004) TCGA-BQ-5894-01 11 44073203 44073203 G T ACCSL Missense_Mutation p.V236L 0.13 deleterious(0) probably_damaging(0.997) TCGA-BQ-5894-01 11 5799428 5799428 G T OR52N5 Missense_Mutation p.T146N 0.32 deleterious(0.04) probably_damaging(0.931) TCGA-BQ-5894-01 12 112694159 112694159 C T HECTD4 Missense_Mutation p.D952N 0.32 benign(0.117) TCGA-BQ-5894-01 12 57910481 57910481 G A DDIT3 3'UTR 0.17 TCGA-BQ-5894-01 12 7084424 7084424 G A EMG1 Missense_Mutation p.V168I 0.16 tolerated(0.35) TCGA-BQ-5894-01 14 24601751 24601751 G C FITM1 Missense_Mutation p.E200Q 0.40 deleterious(0) possibly_damaging(0.875) TCGA-BQ-5894-01 16 30507473 30507473 G A ITGAL Missense_Mutation p.R520Q 0.13 tolerated(0.07) benign(0.423) TCGA-BQ-5894-01 17 72428210 72428210 C G GPRC5C Silent p.P11P 0.10 TCGA-BQ-5894-01 17 80579499 80579499 T C WDR45B Missense_Mutation p.T202A 0.14 deleterious(0) probably_damaging(0.988) TCGA-BQ-5894-01 17 8092343 8092364 GGGCCCTGCCCTGGCCAGGACC - C17orf59 3'UTR 0.31 TCGA-BQ-5894-01 19 51359636 51359636 G T KLK3 Missense_Mutation p.A63S 0.31 deleterious(0) probably_damaging(0.998) TCGA-BQ-5894-01 19 7747477 7747477 G A TRAPPC5 Missense_Mutation p.R113H 0.07 tolerated(0.05) benign(0.018) TCGA-BQ-5894-01 1 161726704 161726704 G - DUSP12 Frame_Shift_Del p.L330Ffs*17 0.26 TCGA-BQ-5894-01 1 208270156 208270156 C A PLXNA2 Missense_Mutation p.V602L 0.30 tolerated(0.36) benign(0.005) TCGA-BQ-5894-01 21 19190580 19190580 C T C21orf91 Missense_Mutation p.S19N 0.04 deleterious(0.01) probably_damaging(0.98) TCGA-BQ-5894-01 22 38823432 38823433 - GGA KCNJ4 In_Frame_Ins p.L235_P236insS 0.30 TCGA-BQ-5894-01 2 149226038 149226038 A G MBD5 Missense_Mutation p.N176D 0.24 tolerated(0.16) possibly_damaging(0.486) TCGA-BQ-5894-01 2 158287080 158287080 T C CYTIP Missense_Mutation p.N156S 0.19 deleterious(0.04) benign(0.107) TCGA-BQ-5894-01 2 86790490 86790490 T A CHMP3 Intron 0.14 TCGA-BQ-5894-01 2 97505559 97505559 C T ANKRD23 Missense_Mutation p.G243R 0.19 deleterious(0) probably_damaging(1) TCGA-BQ-5894-01 5 32108131 32108131 A G PDZD2 Missense_Mutation p.N2804D 0.42 tolerated(0.14) probably_damaging(1) TCGA-BQ-5894-01 6 144507993 144507993 C T STX11 Missense_Mutation p.R77W 0.09 deleterious(0) probably_damaging(1) TCGA-BQ-5894-01 6 1930387 1930387 C T GMDS Missense_Mutation p.G241R 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-BQ-5894-01 6 46801054 46801054 A G MEP1A Missense_Mutation p.E463G 0.14 deleterious(0) probably_damaging(1) TCGA-BQ-5894-01 6 47754339 47754339 C A OPN5 Silent p.I73I 0.32 TCGA-BQ-5894-01 6 53517013 53517013 C T KLHL31 Missense_Mutation p.E430K 0.35 tolerated(0.42) benign(0.084) TCGA-BQ-5894-01 6 70639518 70639518 G T COL19A1 Missense_Mutation p.D198Y 0.18 deleterious(0) unknown(0) TCGA-BQ-5894-01 9 5922386 5922386 T G KIAA2026 Missense_Mutation p.S1204R 0.32 deleterious(0) benign(0.429) TCGA-BQ-7044-01 10 101646325 101646325 G C DNMBP Missense_Mutation p.P1117R 0.35 deleterious(0) probably_damaging(0.999) TCGA-BQ-7044-01 10 105750528 105750528 A G SLK Missense_Mutation p.I82M 0.42 deleterious(0) probably_damaging(1) TCGA-BQ-7044-01 10 61413807 61413807 A G SLC16A9 Missense_Mutation p.L326P 0.39 deleterious(0.03) probably_damaging(0.99) TCGA-BQ-7044-01 10 96998413 96998413 T G PDLIM1 Missense_Mutation p.S239R 0.35 deleterious(0) possibly_damaging(0.781) TCGA-BQ-7044-01 10 97607150 97607150 T - ENTPD1 Intron 0.28 TCGA-BQ-7044-01 11 1247945 1247945 C G MUC5B Missense_Mutation p.N100K 0.23 unknown(0) TCGA-BQ-7044-01 11 76063689 76063689 G C PRKRIR Missense_Mutation p.L169V 0.65 tolerated(0.11) benign(0.384) TCGA-BQ-7044-01 12 101767360 101767360 T C UTP20 Intron 0.62 TCGA-BQ-7044-01 12 132472272 132472272 T A EP400 Missense_Mutation p.I749N 0.27 unknown(0) TCGA-BQ-7044-01 12 132472274 132472274 G C EP400 Missense_Mutation p.A750P 0.27 unknown(0) TCGA-BQ-7044-01 12 49436618 49436618 C G KMT2D Missense_Mutation p.K1896N 0.05 probably_damaging(0.997) TCGA-BQ-7044-01 12 62959064 62959064 A G MON2 Missense_Mutation p.I1360M 0.45 deleterious(0) possibly_damaging(0.661) TCGA-BQ-7044-01 13 28136573 28136576 CCGG A LNX2 Nonsense_Mutation p.P400_E401delins* 0.40 TCGA-BQ-7044-01 13 41766948 41766948 A T KBTBD7 Silent p.V482V 0.49 TCGA-BQ-7044-01 13 99540613 99540613 C T DOCK9 Splice_Site p.X659_splice 0.10 TCGA-BQ-7044-01 14 101201161 101201161 C T DLK1 Silent p.A360A 0.45 TCGA-BQ-7044-01 14 35871173 35871173 T G NFKBIA 3'UTR 0.53 TCGA-BQ-7044-01 14 67688507 67688507 C A FAM71D Missense_Mutation p.T391N 0.18 tolerated_low_confidence(0.06) benign(0.05) TCGA-BQ-7044-01 14 73238479 73238479 T G DPF3 Missense_Mutation p.N52T 0.43 deleterious(0) possibly_damaging(0.859) TCGA-BQ-7044-01 14 94640864 94640864 T C PPP4R4 Missense_Mutation p.M21T 0.23 deleterious(0.03) benign(0.044) TCGA-BQ-7044-01 15 100871170 100871170 G A ADAMTS17 Silent p.I180I 0.56 TCGA-BQ-7044-01 15 101933522 101933522 G A PCSK6 Silent p.S367S 0.42 TCGA-BQ-7044-01 15 20588449 20588449 G C HERC2P3 RNA 0.36 TCGA-BQ-7044-01 15 28090200 28090200 T A OCA2 Splice_Site p.X780_splice 0.34 TCGA-BQ-7044-01 15 41794669 41794670 - A ITPKA Frame_Shift_Ins p.E361Rfs*7 0.32 TCGA-BQ-7044-01 15 45270783 45270783 A - C15orf43 Frame_Shift_Del p.I208Lfs*6 0.36 TCGA-BQ-7044-01 15 64966235 64966235 G T ZNF609 Silent p.G394G 0.36 TCGA-BQ-7044-01 15 72063439 72063439 G C THSD4 Missense_Mutation p.E936Q 0.42 deleterious(0) possibly_damaging(0.884) TCGA-BQ-7044-01 15 83932666 83932666 G A BNC1 Missense_Mutation p.T446M 0.41 tolerated(0.09) benign(0.003) TCGA-BQ-7044-01 16 55360382 55360382 G A IRX6 Silent p.A60A 0.56 TCGA-BQ-7044-01 16 66413245 66413245 A C CDH5 Missense_Mutation p.Q2P 0.23 deleterious_low_confidence(0.04) benign(0.282) TCGA-BQ-7044-01 16 81922847 81922847 A T PLCG2 Missense_Mutation p.E279V 0.27 deleterious(0.03) probably_damaging(0.915) TCGA-BQ-7044-01 17 17722461 17722461 T C SREBF1 Missense_Mutation p.S342G 0.40 tolerated(1) benign(0.001) TCGA-BQ-7044-01 17 29490388 29490388 C - NF1 Frame_Shift_Del p.S158Lfs*7 0.39 TCGA-BQ-7044-01 17 29552188 29552189 AG - NF1 Frame_Shift_Del p.Q642Nfs*6 0.30 TCGA-BQ-7044-01 17 3583061 3583061 G A P2RX5 Missense_Mutation p.S361F 0.28 deleterious(0.04) benign(0.089) TCGA-BQ-7044-01 17 62486981 62486981 C G POLG2 Missense_Mutation p.E301Q 0.49 deleterious(0) possibly_damaging(0.885) TCGA-BQ-7044-01 17 78293016 78293016 C G RNF213 Silent p.A976A 0.35 TCGA-BQ-7044-01 17 79870325 79870325 G A SIRT7 Silent p.C390C 0.48 TCGA-BQ-7044-01 18 163336 163336 T G USP14 Missense_Mutation p.F15L 0.70 tolerated(0.06) benign(0.272) TCGA-BQ-7044-01 19 16503123 16503123 G A EPS15L1 Missense_Mutation p.P699S 0.55 tolerated(0.12) benign(0.249) TCGA-BQ-7044-01 19 16503124 16503124 T A EPS15L1 Missense_Mutation p.L698F 0.56 tolerated(0.05) possibly_damaging(0.73) TCGA-BQ-7044-01 19 16551694 16551694 A G EPS15L1 Silent p.G64G 0.39 TCGA-BQ-7044-01 19 18557590 18557590 G A ELL Silent p.P500P 0.41 TCGA-BQ-7044-01 19 21493348 21493348 A G ZNF708 Missense_Mutation p.Y29H 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-BQ-7044-01 19 21512050 21512050 T A ZNF708 5'UTR 0.42 TCGA-BQ-7044-01 19 2796020 2796020 T C THOP1 Intron 0.50 TCGA-BQ-7044-01 19 35434184 35434184 G A ZNF30 Missense_Mutation p.C106Y 0.50 tolerated(1) possibly_damaging(0.6) TCGA-BQ-7044-01 19 45322619 45322619 C T BCAM Missense_Mutation p.P497L 0.47 tolerated(0.28) benign(0.022) TCGA-BQ-7044-01 19 55385758 55385758 C T FCAR Nonsense_Mutation p.Q5* 0.40 TCGA-BQ-7044-01 19 58266075 58266075 G A ZNF776 3'UTR 0.10 TCGA-BQ-7044-01 19 7570473 7570475 CGG - C19orf45 In_Frame_Del p.G323del 0.41 TCGA-BQ-7044-01 1 150601936 150601936 T G ENSA Missense_Mutation p.K4T 0.47 tolerated_low_confidence(0.14) benign(0.014) TCGA-BQ-7044-01 1 150689613 150689613 C T HORMAD1 Splice_Site p.X60_splice 0.33 TCGA-BQ-7044-01 1 171174553 171174553 C A FMO2 Missense_Mutation p.N321K 0.27 tolerated(0.12) benign(0.009) TCGA-BQ-7044-01 1 34180229 34180229 C T CSMD2 Missense_Mutation p.G1082S 0.65 deleterious(0.01) probably_damaging(1) TCGA-BQ-7044-01 1 78444626 78444626 G A FUBP1 Silent p.G21G 0.70 TCGA-BQ-7044-01 20 23856777 23856777 G - CST5 3'UTR 0.30 TCGA-BQ-7044-01 20 49366983 49366991 TCAAAAACT - PARD6B In_Frame_Del p.Q360_L362del 0.33 TCGA-BQ-7044-01 20 55777539 55777539 G A BMP7 Missense_Mutation p.T251M 0.76 deleterious(0.02) possibly_damaging(0.756) TCGA-BQ-7044-01 22 37709603 37709603 T C CYTH4 3'UTR 0.85 TCGA-BQ-7044-01 2 122122716 122122716 A C CLASP1 Missense_Mutation p.F1344C 0.55 deleterious(0) probably_damaging(0.998) TCGA-BQ-7044-01 2 152490361 152490362 - C NEB Frame_Shift_Ins p.E3074Gfs*7 0.38 TCGA-BQ-7044-01 2 178098800 178098800 T C NFE2L2 Missense_Mutation p.E82G 0.43 deleterious(0) probably_damaging(1) TCGA-BQ-7044-01 2 179550284 179550284 G A TTN Missense_Mutation p.H10785Y 0.38 TCGA-BQ-7044-01 2 197629315 197629315 G A GTF3C3 Missense_Mutation p.T878M 0.51 tolerated(0.22) benign(0) TCGA-BQ-7044-01 2 216289927 216289927 A C FN1 Missense_Mutation p.V309G 0.41 tolerated(0.46) possibly_damaging(0.875) TCGA-BQ-7044-01 2 37235951 37235951 G A HEATR5B Missense_Mutation p.S1442L 0.41 tolerated(0.27) benign(0.005) TCGA-BQ-7044-01 2 9515020 9515020 G C ASAP2 Missense_Mutation p.A565P 0.38 deleterious(0.03) benign(0.216) TCGA-BQ-7044-01 3 130673864 130673864 C T ATP2C1 Silent p.V266V 0.30 TCGA-BQ-7044-01 3 38645417 38645417 G A SCN5A Missense_Mutation p.T559I 0.54 tolerated(0.11) benign(0.054) TCGA-BQ-7044-01 4 48490947 48490948 - TC SLC10A4 Frame_Shift_Ins p.*438S 0.24 TCGA-BQ-7044-01 4 7857226 7857226 T G AFAP1 Missense_Mutation p.S101R 0.43 tolerated(0.07) probably_damaging(0.973) TCGA-BQ-7044-01 4 95191935 95191935 A G SMARCAD1 Missense_Mutation p.K513R 0.37 tolerated(0.06) benign(0.155) TCGA-BQ-7044-01 5 123983889 123983889 A T ZNF608 Missense_Mutation p.S730T 0.45 tolerated(0.07) benign(0.172) TCGA-BQ-7044-01 5 179192887 179192887 G A MAML1 Silent p.L292L 0.44 TCGA-BQ-7044-01 5 32108145 32108145 G A PDZD2 Silent p.L2808L 0.44 TCGA-BQ-7044-01 5 74872636 74872636 A C POLK Missense_Mutation p.N191T 0.42 deleterious(0) benign(0.222) TCGA-BQ-7044-01 6 31124892 31124892 C G CCHCR1 Intron 0.35 TCGA-BQ-7044-01 6 31595867 31595867 C T PRRC2A Missense_Mutation p.A539V 0.39 unknown(0) TCGA-BQ-7044-01 6 42858492 42858492 G A C6orf226 Missense_Mutation p.P12L 0.33 tolerated_low_confidence(0.22) possibly_damaging(0.859) TCGA-BQ-7044-01 6 51917922 51917922 C T PKHD1 Missense_Mutation p.G698S 0.36 tolerated(0.15) benign(0.039) TCGA-BQ-7044-01 7 100486530 100486530 G - UFSP1 Frame_Shift_Del p.N122Tfs*8 0.40 TCGA-BQ-7044-01 7 132069932 132069932 G T PLXNA4 Intron 0.37 TCGA-BQ-7044-01 7 132754922 132754922 G A CHCHD3 Missense_Mutation p.S50F 0.20 tolerated(0.13) benign(0.026) TCGA-BQ-7044-01 7 133692515 133692515 A G EXOC4 Missense_Mutation p.R872G 0.40 deleterious(0) probably_damaging(0.998) TCGA-BQ-7044-01 7 138595898 138595898 G T KIAA1549 Missense_Mutation p.Q1047K 0.28 deleterious(0.02) possibly_damaging(0.814) TCGA-BQ-7044-01 7 141750617 141750617 G T MGAM Missense_Mutation p.V920F 0.20 tolerated(0.3) benign(0.093) TCGA-BQ-7044-01 7 142364264 142364264 T C TRBV24-1 Missense_Mutation p.F11L 0.07 tolerated(0.95) benign(0.012) TCGA-BQ-7044-01 7 73752800 73752800 A T CLIP2 Silent p.S48S 0.61 TCGA-BQ-7044-01 8 110451259 110451259 G A PKHD1L1 Silent p.K1298K 0.39 TCGA-BQ-7044-01 8 20107305 20107305 G A LZTS1 Silent p.A573A 0.45 TCGA-BQ-7044-01 8 26227846 26227849 CACA - PPP2R2A Frame_Shift_Del p.H431Qfs*12 0.33 TCGA-BQ-7044-01 9 116269730 116269730 C T RGS3 Missense_Mutation p.R417W 0.40 deleterious(0) probably_damaging(0.996) TCGA-BQ-7045-01 10 134896356 134896356 C T GPR123-AS1 3'Flank 0.29 TCGA-BQ-7045-01 11 33563978 33563978 C T KIAA1549L 5'UTR 0.31 TCGA-BQ-7045-01 11 55322355 55322355 G C OR4C15 Missense_Mutation p.R191S 0.29 tolerated_low_confidence(0.1) benign(0.003) TCGA-BQ-7045-01 11 73745646 73745646 G - C2CD3 Frame_Shift_Del p.*1964Efs*24 0.27 TCGA-BQ-7045-01 12 59283874 59283874 T A LRIG3 Missense_Mutation p.D188V 0.32 deleterious(0) possibly_damaging(0.898) TCGA-BQ-7045-01 12 6976722 6976722 T C TPI1 Missense_Mutation p.S35P 0.47 tolerated_low_confidence(0.2) benign(0) TCGA-BQ-7045-01 13 30096467 30096467 C T SLC7A1 Silent p.S392S 0.26 TCGA-BQ-7045-01 13 94482740 94482740 C G GPC6 Missense_Mutation p.A218G 0.32 deleterious(0) probably_damaging(0.992) TCGA-BQ-7045-01 13 98086836 98086836 G A RAP2A Missense_Mutation p.D38N 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-BQ-7045-01 13 99907879 99907879 G A GPR18 Missense_Mutation p.A83V 0.26 tolerated(0.6) benign(0.01) TCGA-BQ-7045-01 14 102466716 102466716 G A DYNC1H1 Missense_Mutation p.V1352I 0.31 benign(0.145) TCGA-BQ-7045-01 14 20345257 20345257 C A OR4K2 Silent p.I277I 0.20 TCGA-BQ-7045-01 14 35062276 35062276 A T SNX6 Silent p.S243S 0.27 TCGA-BQ-7045-01 14 38724316 38724316 C T CLEC14A Silent p.R304R 0.34 TCGA-BQ-7045-01 14 53386065 53386065 T A FERMT2 Missense_Mutation p.K56I 0.29 tolerated(0.19) benign(0.011) TCGA-BQ-7045-01 14 70713349 70713349 T C ADAM21P1 RNA 0.19 TCGA-BQ-7045-01 15 25924510 25924510 G A ATP10A Missense_Mutation p.A1493V 0.26 deleterious_low_confidence(0) benign(0.017) TCGA-BQ-7045-01 15 89422488 89422488 G - HAPLN3 Frame_Shift_Del p.P169Lfs*109 0.29 TCGA-BQ-7045-01 15 99670274 99670274 A T SYNM Missense_Mutation p.K569M 0.21 deleterious(0.01) probably_damaging(0.922) TCGA-BQ-7045-01 16 2052644 2052644 C T ZNF598 Silent p.G185G 0.20 TCGA-BQ-7045-01 16 28848194 28848194 T C ATXN2L 3'UTR 0.29 TCGA-BQ-7045-01 16 3554721 3554721 T C CLUAP1 Silent p.N8N 0.20 TCGA-BQ-7045-01 17 27400954 27400954 C G TIAF1 Missense_Mutation p.R88S 0.50 tolerated_low_confidence(0.56) benign(0.402) TCGA-BQ-7045-01 17 36991435 36991435 G T C17orf98 3'UTR 0.49 TCGA-BQ-7045-01 17 40723629 40723629 T C MLX 3'UTR 0.32 TCGA-BQ-7045-01 17 42089524 42089524 C T TMEM101 Silent p.L182L 0.22 TCGA-BQ-7045-01 17 56386306 56386306 G T BZRAP1 Missense_Mutation p.L1443M 0.25 tolerated(0.12) benign(0.192) TCGA-BQ-7045-01 17 61623123 61623123 C T KCNH6 Silent p.L949L 0.21 TCGA-BQ-7045-01 17 74004559 74004559 C T EVPL Missense_Mutation p.R1576Q 0.29 tolerated(0.37) benign(0.015) TCGA-BQ-7045-01 18 31263418 31263418 A G ASXL3 Silent p.G255G 0.26 TCGA-BQ-7045-01 18 48513160 48513160 G C ELAC1 Missense_Mutation p.C266S 0.29 deleterious(0.01) benign(0.349) TCGA-BQ-7045-01 18 56196435 56196435 A G ALPK2 Missense_Mutation p.F1797L 0.28 tolerated(0.07) benign(0.309) TCGA-BQ-7045-01 18 9257291 9257291 T C ANKRD12 Silent p.T1342T 0.36 TCGA-BQ-7045-01 19 12089881 12089881 T C ZNF763 Missense_Mutation p.F384S 0.39 tolerated(0.48) benign(0) TCGA-BQ-7045-01 19 13915960 13915960 A G ZSWIM4 Missense_Mutation p.N237S 0.24 tolerated(0.65) benign(0.001) TCGA-BQ-7045-01 19 17946018 17946018 T C JAK3 Missense_Mutation p.K641E 0.24 deleterious(0) probably_damaging(0.917) TCGA-BQ-7045-01 19 20808028 20808028 G A ZNF626 Missense_Mutation p.H219Y 0.24 deleterious(0.04) probably_damaging(0.995) TCGA-BQ-7045-01 19 4512468 4512468 C T PLIN4 Missense_Mutation p.V488M 0.29 tolerated(0.11) benign(0.285) TCGA-BQ-7045-01 19 54657042 54657042 A C CNOT3 Intron 0.34 TCGA-BQ-7045-01 1 114448194 114448194 T A DCLRE1B 5'UTR 0.22 TCGA-BQ-7045-01 1 150230470 150230470 C T CA14 5'UTR 0.29 TCGA-BQ-7045-01 1 151735603 151735616 CGCTCCACGATGAC - MRPL9 Frame_Shift_Del p.V54Lfs*23 0.40 TCGA-BQ-7045-01 1 16889992 16889992 G A NBPF1 3'UTR 0.29 TCGA-BQ-7045-01 1 214170437 214170438 - AT PROX1 Frame_Shift_Ins p.E188Mfs*12 0.26 TCGA-BQ-7045-01 1 216373415 216373415 G A USH2A Missense_Mutation p.S1122F 0.35 possibly_damaging(0.841) TCGA-BQ-7045-01 1 33236795 33236795 C A KIAA1522 Missense_Mutation p.P672Q 0.29 deleterious(0) unknown(0) TCGA-BQ-7045-01 1 48708165 48708165 C T SLC5A9 Missense_Mutation p.L597F 0.06 tolerated(0.54) benign(0.078) TCGA-BQ-7045-01 1 70895506 70895506 T C CTH Silent p.S206S 0.31 TCGA-BQ-7045-01 1 94528186 94528186 A T ABCA4 Silent p.A628A 0.29 TCGA-BQ-7045-01 20 34025518 34025518 C T GDF5 Missense_Mutation p.S64N 0.32 deleterious_low_confidence(0.04) benign(0.004) TCGA-BQ-7045-01 20 50405586 50405586 G A SALL4 Silent p.S852S 0.32 TCGA-BQ-7045-01 21 31768620 31768620 G T KRTAP13-1 Missense_Mutation p.E72D 0.32 deleterious(0) benign(0.266) TCGA-BQ-7045-01 21 34861049 34861050 - A DNAJC28 Frame_Shift_Ins p.D218* 0.20 TCGA-BQ-7045-01 21 44317078 44317078 T C NDUFV3 Silent p.S30S 0.29 TCGA-BQ-7045-01 22 22287929 22287929 A G PPM1F Missense_Mutation p.F194S 0.43 deleterious(0) possibly_damaging(0.838) TCGA-BQ-7045-01 22 31924806 31924806 C T SFI1 Missense_Mutation p.H75Y 0.31 tolerated(0.57) benign(0.009) TCGA-BQ-7045-01 22 36661665 36661665 C T APOL1 Silent p.N277N 0.30 TCGA-BQ-7045-01 22 40669533 40669533 A G TNRC6B Missense_Mutation p.T1024A 0.33 tolerated(1) benign(0.001) TCGA-BQ-7045-01 2 131904282 131904284 CAC GG PLEKHB2 Frame_Shift_Del p.A210Gfs*14 0.23 TCGA-BQ-7045-01 2 231988374 231988374 C A HTR2B Missense_Mutation p.Q35H 0.33 tolerated_low_confidence(0.07) benign(0.188) TCGA-BQ-7045-01 2 238283616 238283616 C T COL6A3 Missense_Mutation p.V1040I 0.29 probably_damaging(0.974) TCGA-BQ-7045-01 3 130686204 130686204 A G ATP2C1 Missense_Mutation p.R451G 0.27 tolerated(0.11) benign(0.005) TCGA-BQ-7045-01 3 137805834 137805834 A G DZIP1L Missense_Mutation p.L344P 0.23 deleterious(0) probably_damaging(0.999) TCGA-BQ-7045-01 3 141326509 141326518 TTATTATTTA - RASA2 Splice_Site p.X645_splice 0.68 TCGA-BQ-7045-01 3 184041746 184041746 T C EIF4G1 Missense_Mutation p.M825T 0.26 deleterious(0) possibly_damaging(0.794) TCGA-BQ-7045-01 3 28382066 28382066 C - AZI2 Frame_Shift_Del p.E15Kfs*9 0.34 TCGA-BQ-7045-01 3 33156008 33156008 C T CRTAP Missense_Mutation p.P147S 0.34 deleterious(0.01) possibly_damaging(0.793) TCGA-BQ-7045-01 3 46939563 46939563 G T PTH1R Splice_Site p.X142_splice 0.20 TCGA-BQ-7045-01 3 49148708 49148708 T A USP19 Missense_Mutation p.E1101V 0.47 deleterious(0) possibly_damaging(0.466) TCGA-BQ-7045-01 3 49148709 49148709 C T USP19 Missense_Mutation p.E1101K 0.48 tolerated(0.09) possibly_damaging(0.53) TCGA-BQ-7045-01 3 50645554 50645554 A - CISH Frame_Shift_Del p.T105Rfs*18 0.12 TCGA-BQ-7045-01 3 53919483 53919483 A T SELK 3'UTR 0.22 TCGA-BQ-7045-01 3 69988260 69988261 - T MITF Frame_Shift_Ins p.E200* 0.37 TCGA-BQ-7045-01 4 109571838 109571838 C T OSTC Silent p.F9F 0.33 TCGA-BQ-7045-01 4 165878655 165878655 C A FAM218A 3'UTR 0.27 TCGA-BQ-7045-01 4 17590497 17590497 G A LAP3 Missense_Mutation p.G254R 0.39 deleterious(0) probably_damaging(1) TCGA-BQ-7045-01 4 38990526 38990526 G T TMEM156 Silent p.I228I 0.24 TCGA-BQ-7045-01 4 55981041 55981042 - T KDR Frame_Shift_Ins p.G220Rfs*3 0.24 TCGA-BQ-7045-01 4 57182080 57182080 T - KIAA1211 Frame_Shift_Del p.Y805Tfs*24 0.29 TCGA-BQ-7045-01 4 6826145 6826145 T C KIAA0232 5'UTR 0.34 TCGA-BQ-7045-01 4 82074809 82074809 C A PRKG2 Missense_Mutation p.A327S 0.16 tolerated(1) possibly_damaging(0.71) TCGA-BQ-7045-01 5 140242250 140242250 G A AC005609.1 3'UTR 0.45 TCGA-BQ-7045-01 5 147010974 147010974 A G JAKMIP2 Splice_Site p.X625_splice 0.26 TCGA-BQ-7045-01 5 1801592 1801592 C A NDUFS6 Missense_Mutation p.L21M 0.49 tolerated(0.1) benign(0.245) TCGA-BQ-7045-01 6 111587895 111587895 A T KIAA1919 Missense_Mutation p.Q377L 0.29 tolerated(0.26) benign(0.165) TCGA-BQ-7045-01 6 132179808 132179808 A - ENPP1 Frame_Shift_Del p.K240Nfs*9 0.19 TCGA-BQ-7045-01 6 168276027 168276027 A C MLLT4 Silent p.R197R 0.32 TCGA-BQ-7045-01 6 169622311 169622311 G T THBS2 Missense_Mutation p.T1085K 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-BQ-7045-01 6 2623684 2623684 C A C6orf195 Nonsense_Mutation p.E125* 0.37 TCGA-BQ-7045-01 6 43970795 43970795 C T C6orf223 Missense_Mutation p.R221C 0.44 tolerated_low_confidence(0.13) benign(0.015) TCGA-BQ-7045-01 6 55223709 55223709 C - GFRAL Frame_Shift_Del p.S242* 0.28 TCGA-BQ-7045-01 7 100160553 100160553 C T AGFG2 Silent p.P385P 0.21 TCGA-BQ-7045-01 7 132523165 132523165 T G CHCHD3 Missense_Mutation p.K173T 0.52 tolerated(0.08) possibly_damaging(0.708) TCGA-BQ-7045-01 7 142569741 142569741 C A TRPV6 Missense_Mutation p.V633L 0.17 deleterious(0.03) benign(0.291) TCGA-BQ-7045-01 7 151064971 151064971 C A NUB1 Missense_Mutation p.L362M 0.22 deleterious(0) probably_damaging(1) TCGA-BQ-7045-01 7 45104062 45104062 A G CCM2 Missense_Mutation p.R118G 0.13 deleterious(0.01) benign(0.138) TCGA-BQ-7045-01 7 82532016 82532016 A G PCLO Silent p.P4493P 0.54 TCGA-BQ-7045-01 8 110986410 110986410 C A KCNV1 Missense_Mutation p.V70L 0.54 tolerated(0.71) benign(0.004) TCGA-BQ-7045-01 8 142432281 142432282 - TC PTP4A3 5'UTR 0.27 TCGA-BQ-7045-01 9 119202962 119202962 G T ASTN2 Silent p.V1185V 0.37 TCGA-BQ-7045-01 9 131028577 131028577 G A GOLGA2 Nonsense_Mutation p.Q197* 0.36 TCGA-BQ-7045-01 9 138839743 138839743 T C UBAC1 Silent p.Q114Q 0.41 TCGA-BQ-7045-01 X 153627911 153627911 G A RPL10 Missense_Mutation p.E56K 0.59 deleterious(0.01) possibly_damaging(0.591) TCGA-BQ-7046-01 10 29811367 29811367 G C SVIL Missense_Mutation p.P1121A 0.31 tolerated(0.24) benign(0.005) TCGA-BQ-7046-01 10 34648076 34648076 T C PARD3 Missense_Mutation p.E689G 0.28 deleterious(0.01) possibly_damaging(0.618) TCGA-BQ-7046-01 10 63212836 63212836 C T TMEM26 Missense_Mutation p.E2K 0.37 deleterious(0.03) benign(0.424) TCGA-BQ-7046-01 10 74100871 74100871 T A DNAJB12 Missense_Mutation p.Q206L 0.32 tolerated(0.78) possibly_damaging(0.687) TCGA-BQ-7046-01 11 124765531 124765531 G A ROBO4 Silent p.T286T 0.30 TCGA-BQ-7046-01 11 125791202 125791202 A - DDX25 Frame_Shift_Del p.G442Afs*6 0.11 TCGA-BQ-7046-01 11 1776167 1776167 G A CTSD Missense_Mutation p.R266C 0.30 deleterious(0) probably_damaging(0.999) TCGA-BQ-7046-01 11 63594447 63594448 GT - C11orf84 Frame_Shift_Del p.V328Afs*28 0.29 TCGA-BQ-7046-01 11 64453122 64453122 C T NRXN2 Missense_Mutation p.R383H 0.31 deleterious(0) benign(0.044) TCGA-BQ-7046-01 11 65270521 65270522 GA - MALAT1 RNA 0.17 TCGA-BQ-7046-01 11 73681178 73681178 G - DNAJB13 3'UTR 0.15 TCGA-BQ-7046-01 12 12334210 12334210 T G LRP6 Missense_Mutation p.E380D 0.36 tolerated(0.1) benign(0.042) TCGA-BQ-7046-01 12 67691215 67691215 C A CAND1 Missense_Mutation p.P174T 0.23 tolerated(0.44) benign(0.058) TCGA-BQ-7046-01 14 21862588 21862588 T A CHD8 Missense_Mutation p.E1816V 0.32 tolerated(1) probably_damaging(0.991) TCGA-BQ-7046-01 15 96875635 96875635 A G NR2F2 Missense_Mutation p.S101G 0.37 tolerated(0.32) probably_damaging(0.98) TCGA-BQ-7046-01 16 57261323 57261323 A - RSPRY1 Frame_Shift_Del p.N411Mfs*18 0.33 TCGA-BQ-7046-01 17 3788981 3788981 T C CAMKK1 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) benign(0.01) TCGA-BQ-7046-01 17 39140321 39140321 T A KRT40 Missense_Mutation p.N69Y 0.54 tolerated(0.08) benign(0.033) TCGA-BQ-7046-01 17 42855164 42855164 C G ADAM11 Missense_Mutation p.P668R 0.66 deleterious(0) probably_damaging(0.958) TCGA-BQ-7046-01 17 4451584 4451584 C T MYBBP1A Silent p.T526T 0.54 TCGA-BQ-7046-01 17 72436053 72436053 T A GPRC5C Silent p.S91S 0.54 TCGA-BQ-7046-01 19 3525916 3525916 G A FZR1 Silent p.S40S 0.30 TCGA-BQ-7046-01 19 42224098 42224098 G A CEACAM5 Missense_Mutation p.R581H 0.35 tolerated(0.33) benign(0.02) TCGA-BQ-7046-01 1 109642945 109642945 G - TMEM167B 3'Flank 0.24 TCGA-BQ-7046-01 1 151509762 151509762 C T CGN Silent p.Y1184Y 0.28 TCGA-BQ-7046-01 1 154562826 154562826 T C ADAR Missense_Mutation p.K777R 0.18 deleterious(0) probably_damaging(0.999) TCGA-BQ-7046-01 1 1638914 1638914 G T CDK11A Silent p.P393P 0.54 TCGA-BQ-7046-01 1 201034981 201034981 G T CACNA1S Silent p.G946G 0.37 TCGA-BQ-7046-01 1 5935029 5935029 G A NPHP4 Silent p.A983A 0.09 TCGA-BQ-7046-01 20 24944513 24944513 C T APMAP Missense_Mutation p.G396E 0.14 deleterious(0) possibly_damaging(0.677) TCGA-BQ-7046-01 20 46254125 46254125 G T NCOA3 Missense_Mutation p.G86V 0.42 tolerated(0.06) probably_damaging(1) TCGA-BQ-7046-01 21 30698866 30698866 A - BACH1 Frame_Shift_Del p.T241Lfs*35 0.24 TCGA-BQ-7046-01 21 41459172 41459172 G A DSCAM Missense_Mutation p.P1298L 0.11 deleterious(0) probably_damaging(1) TCGA-BQ-7046-01 22 21237785 21237785 G C SNAP29 Missense_Mutation p.A183P 0.29 tolerated(0.13) possibly_damaging(0.895) TCGA-BQ-7046-01 22 36649906 36649906 A C APOL1 5'UTR 0.57 TCGA-BQ-7046-01 2 202493983 202493983 A - TMEM237 Frame_Shift_Del p.L280Wfs*3 0.26 TCGA-BQ-7046-01 3 148872995 148872995 A G HPS3 Missense_Mutation p.K501R 0.31 tolerated(0.83) probably_damaging(0.953) TCGA-BQ-7046-01 4 40440532 40440532 C G RBM47 Missense_Mutation p.A127P 0.12 deleterious(0) probably_damaging(0.992) TCGA-BQ-7046-01 4 98633942 98633942 A T STPG2 Missense_Mutation p.L410I 0.35 tolerated(0.15) benign(0.207) TCGA-BQ-7046-01 5 118525502 118525502 C G DMXL1 Missense_Mutation p.P2412R 0.27 tolerated(0.16) benign(0.001) TCGA-BQ-7046-01 5 64020168 64020168 A - SREK1IP1 3'UTR 0.19 TCGA-BQ-7046-01 6 24578370 24578370 C G KIAA0319 Missense_Mutation p.L491F 0.34 deleterious(0) probably_damaging(0.999) TCGA-BQ-7046-01 7 21737744 21737744 A G DNAH11 Silent p.L2038L 0.49 TCGA-BQ-7046-01 7 76828725 76828726 - T FGL2 Frame_Shift_Ins p.R129Kfs*3 0.17 TCGA-BQ-7046-01 8 22102938 22102938 C T POLR3D 5'UTR 0.39 TCGA-BQ-7046-01 8 41836161 41836161 C - KAT6A Frame_Shift_Del p.V348Yfs*37 0.24 TCGA-BQ-7046-01 9 17462949 17462949 T - CNTLN Frame_Shift_Del p.N1114Kfs*2 0.23 TCGA-BQ-7048-01 10 111878343 111878343 A G ADD3 Splice_Site p.X190_splice 0.44 TCGA-BQ-7048-01 10 61829643 61829643 T C ANK3 Missense_Mutation p.T3666A 0.44 benign(0) TCGA-BQ-7048-01 10 81702148 81702148 G C SFTPD Silent p.P143P 0.40 TCGA-BQ-7048-01 11 119210071 119210071 G C C1QTNF5 Silent p.S234S 0.32 TCGA-BQ-7048-01 11 12316190 12316190 C T MICALCL Silent p.D404D 0.37 TCGA-BQ-7048-01 11 43418965 43418965 C A TTC17 Missense_Mutation p.A281D 0.46 deleterious(0) probably_damaging(0.999) TCGA-BQ-7048-01 11 56019938 56019938 C T OR5T3 Missense_Mutation p.P88L 0.28 deleterious(0) possibly_damaging(0.707) TCGA-BQ-7048-01 11 56143937 56143937 G C OR8U1 Missense_Mutation p.V280L 0.03 tolerated(0.86) benign(0.236) TCGA-BQ-7048-01 11 65267784 65267784 T C MALAT1 RNA 0.12 TCGA-BQ-7048-01 12 12302076 12302076 C T LRP6 Silent p.V1002V 0.43 TCGA-BQ-7048-01 12 48888593 48888593 T C C12orf54 Silent p.P85P 0.41 TCGA-BQ-7048-01 12 49437679 49437679 A G KMT2D Missense_Mutation p.L1764P 0.32 probably_damaging(0.999) TCGA-BQ-7048-01 12 70704758 70704758 C T CNOT2 Silent p.Y44Y 0.24 TCGA-BQ-7048-01 13 43462629 43462629 C A EPSTI1 Missense_Mutation p.E330D 0.38 tolerated_low_confidence(0.37) benign(0.009) TCGA-BQ-7048-01 13 45768267 45768269 TTA - KCTD4 In_Frame_Del p.I145del 0.10 TCGA-BQ-7048-01 14 19553567 19553567 G A POTEG Missense_Mutation p.D51N 0.04 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BQ-7048-01 14 21928272 21928272 C T RAB2B 3'UTR 0.29 TCGA-BQ-7048-01 14 35872504 35872504 A G NFKBIA Silent p.A133A 0.05 TCGA-BQ-7048-01 14 50196254 50196254 C G KLHDC1 Missense_Mutation p.T233S 0.42 tolerated(0.08) benign(0.01) TCGA-BQ-7048-01 15 25959142 25959142 C A ATP10A Missense_Mutation p.D675Y 0.29 deleterious(0.02) benign(0.288) TCGA-BQ-7048-01 15 27777965 27777965 T C GABRG3 Missense_Mutation p.F448L 0.05 tolerated(0.47) probably_damaging(0.995) TCGA-BQ-7048-01 15 81282037 81282037 G A MESDC2 Silent p.C32C 0.48 TCGA-BQ-7048-01 16 29830999 29830999 C G PAGR1 Missense_Mutation p.S230W 0.19 deleterious(0.01) possibly_damaging(0.889) TCGA-BQ-7048-01 16 49670868 49670868 T A ZNF423 Missense_Mutation p.K732M 0.13 deleterious(0) probably_damaging(1) TCGA-BQ-7048-01 17 56565509 56565509 G A HSF5 Nonsense_Mutation p.Q43* 0.52 TCGA-BQ-7048-01 17 72368139 72368139 C A GPR142 Silent p.P263P 0.16 TCGA-BQ-7048-01 17 74158077 74158077 C A RNF157 Nonsense_Mutation p.E267* 0.43 TCGA-BQ-7048-01 17 76115385 76115385 G C TMC6 Missense_Mutation p.L602V 0.32 deleterious(0) probably_damaging(0.927) TCGA-BQ-7048-01 18 61379816 61379816 A - SERPINB11 Frame_Shift_Del p.I83Ffs*40 0.28 TCGA-BQ-7048-01 19 35617832 35617832 G T LGI4 Missense_Mutation p.P240T 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-BQ-7048-01 1 117633172 117633172 A T TTF2 Nonsense_Mutation p.K839* 0.21 TCGA-BQ-7048-01 1 144823878 144823878 A C NBPF9 Missense_Mutation p.Y381S 0.10 tolerated(0.61) unknown(0) TCGA-BQ-7048-01 1 169824950 169824950 A T SCYL3 Silent p.T487T 0.38 TCGA-BQ-7048-01 1 171810797 171810797 A C DNM3 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0.03) benign(0.372) TCGA-BQ-7048-01 1 182775301 182775301 G C NPL Missense_Mutation p.G55A 0.17 deleterious(0.02) probably_damaging(0.974) TCGA-BQ-7048-01 1 19566346 19566346 T C EMC1 Missense_Mutation p.Y307C 0.33 tolerated(0.18) benign(0.028) TCGA-BQ-7048-01 1 90399759 90399759 T A LRRC8D Missense_Mutation p.F378I 0.36 tolerated(0.13) benign(0.001) TCGA-BQ-7048-01 1 92948601 92948601 T C GFI1 Missense_Mutation p.S40G 0.40 tolerated_low_confidence(0.43) possibly_damaging(0.483) TCGA-BQ-7048-01 1 94506770 94506770 T A ABCA4 Missense_Mutation p.S1173C 0.31 tolerated(0.21) benign(0) TCGA-BQ-7048-01 20 44579218 44579218 T C ZNF335 Missense_Mutation p.H1069R 0.11 deleterious(0) probably_damaging(1) TCGA-BQ-7048-01 20 50701575 50701575 G A ZFP64 Missense_Mutation p.R487W 0.27 deleterious(0) probably_damaging(0.965) TCGA-BQ-7048-01 20 62421455 62421455 C G ZBTB46 Missense_Mutation p.G219A 0.38 tolerated(0.33) benign(0.011) TCGA-BQ-7048-01 21 31709825 31709825 G A KRTAP27-1 Silent p.C54C 0.34 TCGA-BQ-7048-01 21 32638551 32638551 G A TIAM1 Silent p.N246N 0.30 TCGA-BQ-7048-01 21 47865319 47865319 T C PCNT 3'UTR 0.32 TCGA-BQ-7048-01 22 17280836 17280836 G T XKR3 Silent p.I138I 0.45 TCGA-BQ-7048-01 22 24145544 24145544 C T SMARCB1 Missense_Mutation p.P188L 0.09 deleterious(0) probably_damaging(1) TCGA-BQ-7048-01 22 24891325 24891325 A C UPB1 5'UTR 0.47 TCGA-BQ-7048-01 22 24891329 24891329 C G UPB1 5'UTR 0.48 TCGA-BQ-7048-01 22 31799189 31799189 A G DRG1 Missense_Mutation p.Q114R 0.06 deleterious(0.01) probably_damaging(0.968) TCGA-BQ-7048-01 22 37578392 37578392 C T C1QTNF6 Missense_Mutation p.E225K 0.23 deleterious(0) benign(0.232) TCGA-BQ-7048-01 22 40816560 40816562 CCC - MKL1 In_Frame_Del p.G301del 0.48 TCGA-BQ-7048-01 2 111921708 111921716 AGGTATTTT - BCL2L11 Splice_Site p.X167_splice 0.29 TCGA-BQ-7048-01 2 128526506 128526506 C A WDR33 Splice_Site p.X91_splice 0.38 TCGA-BQ-7048-01 2 178977555 178977555 C T RBM45 Silent p.N94N 0.13 TCGA-BQ-7048-01 2 230701700 230701702 ACT - TRIP12 Splice_Site p.X336_splice 0.47 TCGA-BQ-7048-01 2 38302357 38302357 G C CYP1B1 Missense_Mutation p.L59V 0.50 tolerated(0.61) benign(0.075) TCGA-BQ-7048-01 2 74362686 74362686 C A BOLA3 3'UTR 0.29 TCGA-BQ-7048-01 3 160232961 160232961 A G KPNA4 Intron 0.20 TCGA-BQ-7048-01 3 171394619 171394619 G A PLD1 Silent p.F667F 0.41 TCGA-BQ-7048-01 3 64084893 64084893 A G PRICKLE2 Missense_Mutation p.F790S 0.45 deleterious(0) probably_damaging(0.965) TCGA-BQ-7048-01 4 184931856 184931856 A - STOX2 Frame_Shift_Del p.E622Gfs*6 0.08 TCGA-BQ-7048-01 4 185724472 185724472 A T ACSL1 Splice_Site p.X65_splice 0.64 TCGA-BQ-7048-01 4 25806261 25806261 A T SEL1L3 Missense_Mutation p.F560I 0.43 tolerated(0.18) benign(0.027) TCGA-BQ-7048-01 5 131007378 131007379 CT - FNIP1 Frame_Shift_Del p.S920Ffs*3 0.32 TCGA-BQ-7048-01 5 140230736 140230736 T G PCDHA9 Intron 0.54 TCGA-BQ-7048-01 5 141974869 141974869 C A FGF1 Missense_Mutation p.V152F 0.37 deleterious(0) benign(0.069) TCGA-BQ-7048-01 5 172518450 172518450 A G CREBRF Intron 0.35 TCGA-BQ-7048-01 5 72151675 72151675 G A TNPO1 Missense_Mutation p.G94S 0.24 tolerated(0.41) benign(0.001) TCGA-BQ-7048-01 6 150005370 150005370 G T LATS1 Silent p.I285I 0.45 TCGA-BQ-7048-01 6 152201893 152201893 A G ESR1 Silent p.G249G 0.34 TCGA-BQ-7048-01 6 153043198 153043198 G T MYCT1 Missense_Mutation p.C173F 0.44 deleterious(0.05) possibly_damaging(0.632) TCGA-BQ-7048-01 6 167755036 167755036 G T TTLL2 Missense_Mutation p.D550Y 0.38 tolerated(0.43) possibly_damaging(0.592) TCGA-BQ-7048-01 6 43541219 43541219 G C XPO5 Silent p.V75V 0.51 TCGA-BQ-7048-01 6 44390390 44390390 T C CDC5L Silent p.P416P 0.04 TCGA-BQ-7048-01 7 150935887 150935887 A T CHPF2 3'UTR 0.36 TCGA-BQ-7048-01 7 70255838 70255838 T - AUTS2 Frame_Shift_Del p.P1213Rfs*5 0.18 TCGA-BQ-7048-01 7 72988278 72988278 G A TBL2 Missense_Mutation p.P146S 0.31 deleterious(0) probably_damaging(0.994) TCGA-BQ-7048-01 8 17581310 17581310 A G MTUS1 Missense_Mutation p.S774P 0.41 tolerated(0.06) possibly_damaging(0.45) TCGA-BQ-7048-01 9 101894937 101894937 C G TGFBR1 Missense_Mutation p.P164A 0.31 tolerated(0.64) benign(0.265) TCGA-BQ-7048-01 9 124522288 124522288 G T DAB2IP Missense_Mutation p.G219V 0.24 deleterious(0.01) benign(0.068) TCGA-BQ-7048-01 9 139621127 139621127 A G FAM69B 3'Flank 0.20 TCGA-BQ-7048-01 9 36211662 36211662 G - CLTA Frame_Shift_Del p.V214Wfs*49 0.32 TCGA-BQ-7049-01 11 119051968 119051968 T A NLRX1 Splice_Site p.X785_splice 0.31 TCGA-BQ-7049-01 11 82882883 82882883 A G PCF11 Silent p.P1228P 0.06 TCGA-BQ-7049-01 16 78011538 78011538 G T VAT1L Missense_Mutation p.E402D 0.16 deleterious_low_confidence(0.04) probably_damaging(0.931) TCGA-BQ-7049-01 17 18025392 18025392 C T MYO15A Missense_Mutation p.P1093L 0.09 unknown(0) TCGA-BQ-7049-01 19 44378055 44378055 A G ZNF404 Missense_Mutation p.V104A 0.04 tolerated(0.48) benign(0.037) TCGA-BQ-7049-01 19 50981244 50981244 A G EMC10 Missense_Mutation p.H58R 0.21 deleterious(0) probably_damaging(0.999) TCGA-BQ-7049-01 22 22869234 22869234 C A ZNF280A Missense_Mutation p.D241Y 0.14 deleterious(0.02) benign(0.004) TCGA-BQ-7049-01 2 166904262 166904262 A T SCN1A Missense_Mutation p.Y349N 0.12 deleterious(0) possibly_damaging(0.87) TCGA-BQ-7049-01 2 179247924 179247924 C G OSBPL6 Missense_Mutation p.L624V 0.35 deleterious(0) probably_damaging(0.999) TCGA-BQ-7049-01 2 203395530 203395530 T C BMPR2 Silent p.P327P 0.07 TCGA-BQ-7049-01 3 93629510 93629510 G A PROS1 Missense_Mutation p.A100V 0.10 tolerated(0.13) benign(0.013) TCGA-BQ-7049-01 5 224586 224586 G A SDHA Missense_Mutation p.A88T 0.16 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BQ-7049-01 5 33596055 33596055 T G ADAMTS12 Missense_Mutation p.K880Q 0.18 tolerated(0.14) benign(0.077) TCGA-BQ-7049-01 6 26123936 26123936 A C HIST1H2BC Missense_Mutation p.F66C 0.06 deleterious_low_confidence(0) possibly_damaging(0.732) TCGA-BQ-7049-01 8 42037495 42037495 G A PLAT Silent p.L438L 0.23 TCGA-BQ-7049-01 9 139972976 139972976 A G UAP1L1 Missense_Mutation p.T173A 0.21 deleterious(0) probably_damaging(0.998) TCGA-BQ-7049-01 9 23762205 23762205 T C ELAVL2 Missense_Mutation p.T10A 0.19 tolerated_low_confidence(0.53) benign(0.001) TCGA-BQ-7049-01 X 16773188 16773188 T C SYAP1 Silent p.N232N 0.45 TCGA-BQ-7050-01 11 110134893 110134893 C T RDX Missense_Mutation p.E87K 0.22 deleterious(0.01) possibly_damaging(0.537) TCGA-BQ-7050-01 11 82875304 82875304 C T PCF11 Missense_Mutation p.P188L 0.28 tolerated(0.06) possibly_damaging(0.758) TCGA-BQ-7050-01 12 56720460 56720460 T C PAN2 Silent p.P401P 0.45 TCGA-BQ-7050-01 12 72017888 72017888 A T ZFC3H1 Nonsense_Mutation p.L1501* 0.18 TCGA-BQ-7050-01 15 39882095 39882095 C G THBS1 Silent p.P672P 0.19 TCGA-BQ-7050-01 18 56586514 56586514 C T ZNF532 Missense_Mutation p.P332L 0.41 deleterious(0.02) benign(0.02) TCGA-BQ-7050-01 19 11943483 11943485 GTT - ZNF440 In_Frame_Del p.V498del 0.36 TCGA-BQ-7050-01 19 39898403 39898403 T C ZFP36 Silent p.P21P 0.35 TCGA-BQ-7050-01 19 52497088 52497088 C A ZNF615 Missense_Mutation p.C425F 0.37 tolerated(0.27) possibly_damaging(0.857) TCGA-BQ-7050-01 19 868391 868391 C T MED16 Intron 0.44 TCGA-BQ-7050-01 1 155317614 155317614 A G ASH1L Missense_Mutation p.S2546P 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.505) TCGA-BQ-7050-01 1 169076130 169076130 G - ATP1B1 Frame_Shift_Del p.K22Rfs*19 0.25 TCGA-BQ-7050-01 1 198231718 198231718 T G NEK7 Missense_Mutation p.M71R 0.16 deleterious(0.01) probably_damaging(0.936) TCGA-BQ-7050-01 3 132184844 132184844 T C DNAJC13 Missense_Mutation p.L633P 0.29 deleterious(0) probably_damaging(0.999) TCGA-BQ-7050-01 3 142141468 142141468 G C XRN1 Missense_Mutation p.P308R 0.09 deleterious(0) probably_damaging(0.921) TCGA-BQ-7050-01 4 101386577 101386577 T C EMCN Intron 0.46 TCGA-BQ-7050-01 5 145836845 145836845 G A TCERG1 Missense_Mutation p.A129T 0.34 tolerated(0.26) benign(0.057) TCGA-BQ-7050-01 5 148563057 148563057 A G ABLIM3 Missense_Mutation p.N19S 0.14 tolerated(0.74) benign(0) TCGA-BQ-7050-01 6 159414935 159414935 C T RSPH3 Missense_Mutation p.G189E 0.15 deleterious(0.01) probably_damaging(0.927) TCGA-BQ-7050-01 7 116166677 116166677 C T CAV1 Silent p.D43D 0.11 TCGA-BQ-7050-01 7 142568111 142568111 A G EPHB6 Missense_Mutation p.M918V 0.10 deleterious(0.02) benign(0.409) TCGA-BQ-7050-01 8 144940482 144940482 A G EPPK1 Missense_Mutation p.Y2314H 0.07 probably_damaging(0.993) TCGA-BQ-7050-01 9 139795025 139795025 G A TRAF2 Intron 0.24 TCGA-BQ-7050-01 9 139837319 139837319 A C FBXW5 Missense_Mutation p.F143C 0.12 deleterious(0) probably_damaging(0.999) TCGA-BQ-7050-01 9 87342656 87342656 C G NTRK2 Missense_Mutation p.A314G 0.38 tolerated(0.06) benign(0.084) TCGA-BQ-7051-01 10 3206029 3206029 G A PITRM1 Missense_Mutation p.P227S 0.49 deleterious(0) probably_damaging(0.988) TCGA-BQ-7051-01 10 51586276 51586276 A T NCOA4 Silent p.V584V 0.35 TCGA-BQ-7051-01 10 89717669 89717669 A G PTEN Missense_Mutation p.T232A 0.31 tolerated(0.37) benign(0.039) TCGA-BQ-7051-01 11 108535821 108535821 A G DDX10 5'UTR 0.47 TCGA-BQ-7051-01 11 118250228 118250228 C T UBE4A Nonsense_Mutation p.Q554* 0.53 TCGA-BQ-7051-01 11 119044337 119044337 C T NLRX1 Missense_Mutation p.P127S 0.36 tolerated(0.73) benign(0.001) TCGA-BQ-7051-01 11 119988941 119988941 G A TRIM29 Silent p.F539F 0.34 TCGA-BQ-7051-01 11 55110978 55110978 T C OR4A16 Missense_Mutation p.I101T 0.08 tolerated_low_confidence(0.36) benign(0.045) TCGA-BQ-7051-01 11 639919 639919 G A DRD4 Missense_Mutation p.V224M 0.45 deleterious(0.04) unknown(0) TCGA-BQ-7051-01 11 77047284 77047284 T - PAK1 Frame_Shift_Del p.K420Nfs*6 0.32 TCGA-BQ-7051-01 12 2909052 2909052 A G FKBP4 Silent p.Q236Q 0.53 TCGA-BQ-7051-01 12 41323760 41323760 A G CNTN1 Missense_Mutation p.K220R 0.39 deleterious(0.04) possibly_damaging(0.73) TCGA-BQ-7051-01 12 43823478 43823478 A - ADAMTS20 Frame_Shift_Del p.L1144Yfs*7 0.44 TCGA-BQ-7051-01 12 49087909 49087909 G T CCNT1 Missense_Mutation p.S363Y 0.44 deleterious(0.03) possibly_damaging(0.804) TCGA-BQ-7051-01 12 49435198 49435199 - G KMT2D Frame_Shift_Ins p.A2119Rfs*36 0.43 TCGA-BQ-7051-01 12 52579248 52579248 C G KRT80 Missense_Mutation p.E142Q 0.42 tolerated(1) benign(0.099) TCGA-BQ-7051-01 12 52647401 52647401 G A KRT7 3'Flank 0.27 TCGA-BQ-7051-01 12 67699344 67699344 G A CAND1 Silent p.L632L 0.48 TCGA-BQ-7051-01 12 7867786 7867786 T A DPPA3 Silent p.S30S 0.44 TCGA-BQ-7051-01 13 36700222 36700222 G A DCLK1 Missense_Mutation p.A18V 0.21 tolerated_low_confidence(0.58) unknown(0) TCGA-BQ-7051-01 13 39450406 39450406 T G FREM2 Missense_Mutation p.Y2811D 0.53 deleterious(0) possibly_damaging(0.617) TCGA-BQ-7051-01 13 41705610 41705612 CAC - KBTBD6 In_Frame_Del p.V346del 0.15 TCGA-BQ-7051-01 14 20845481 20845481 G A TEP1 Silent p.L2016L 0.44 TCGA-BQ-7051-01 14 20944608 20944608 C T PNP Missense_Mutation p.L240F 0.44 deleterious(0) probably_damaging(1) TCGA-BQ-7051-01 14 24626550 24626550 C T RNF31 Missense_Mutation p.R849C 0.56 deleterious(0) possibly_damaging(0.677) TCGA-BQ-7051-01 14 35592664 35592664 T G KIAA0391 Missense_Mutation p.D71E 0.47 tolerated(0.24) benign(0.001) TCGA-BQ-7051-01 14 68118141 68118141 C T VTI1B Silent p.L220L 0.53 TCGA-BQ-7051-01 15 75221461 75221461 A - COX5A Frame_Shift_Del p.I74* 0.21 TCGA-BQ-7051-01 15 75501176 75501176 G A C15orf39 Intron 0.46 TCGA-BQ-7051-01 15 75664533 75664533 G A SIN3A Silent p.S1203S 0.35 TCGA-BQ-7051-01 15 90138745 90138745 T C TICRR Silent p.D601D 0.45 TCGA-BQ-7051-01 17 26731859 26731859 C - SLC46A1 Frame_Shift_Del p.D286Tfs*3 0.40 TCGA-BQ-7051-01 17 26911390 26911390 A G SPAG5 Missense_Mutation p.L757P 0.68 deleterious(0) probably_damaging(0.957) TCGA-BQ-7051-01 17 38938378 38938378 A G KRT27 Missense_Mutation p.F123S 0.06 tolerated(0.11) possibly_damaging(0.816) TCGA-BQ-7051-01 17 48275830 48275830 C G COL1A1 Missense_Mutation p.E169D 0.29 unknown(0) TCGA-BQ-7051-01 17 56164457 56164457 T A DYNLL2 Silent p.S2S 0.69 TCGA-BQ-7051-01 17 80382347 80382347 T C HEXDC Silent p.P54P 0.27 TCGA-BQ-7051-01 18 71816322 71816322 C G TIMM21 Silent p.T93T 0.55 TCGA-BQ-7051-01 19 11312640 11312640 C A DOCK6 Missense_Mutation p.K1871N 0.53 deleterious(0) probably_damaging(0.999) TCGA-BQ-7051-01 19 11312680 11312680 G C DOCK6 Missense_Mutation p.P1858R 0.31 tolerated(0.79) benign(0.06) TCGA-BQ-7051-01 19 14991895 14991895 G A OR7A17 Silent p.V91V 0.48 TCGA-BQ-7051-01 19 17362478 17362478 C G USHBP1 Missense_Mutation p.R612P 0.44 tolerated(0.08) possibly_damaging(0.615) TCGA-BQ-7051-01 19 18876245 18876245 C G CRTC1 Missense_Mutation p.H322Q 0.36 deleterious(0.05) possibly_damaging(0.462) TCGA-BQ-7051-01 19 20003291 20003291 C T ZNF253 Missense_Mutation p.S412F 0.50 deleterious(0.03) benign(0.026) TCGA-BQ-7051-01 19 57037192 57037192 T C ZNF471 Missense_Mutation p.C586R 0.41 tolerated(0.15) benign(0.001) TCGA-BQ-7051-01 19 7712265 7712265 A T STXBP2 Missense_Mutation p.N522Y 0.41 deleterious(0.01) possibly_damaging(0.721) TCGA-BQ-7051-01 1 12061548 12061549 TT - MFN2 Frame_Shift_Del p.F303Cfs*4 0.41 TCGA-BQ-7051-01 1 155581021 155581021 C G MSTO1 Missense_Mutation p.T102S 0.22 tolerated(0.17) benign(0.084) TCGA-BQ-7051-01 1 180000535 180000535 A C CEP350 Missense_Mutation p.K1211Q 0.42 possibly_damaging(0.889) TCGA-BQ-7051-01 1 214556993 214556993 G A PTPN14 Silent p.A735A 0.39 TCGA-BQ-7051-01 1 22214014 22214014 C A HSPG2 Missense_Mutation p.G286V 0.47 possibly_damaging(0.673) TCGA-BQ-7051-01 1 241757604 241757604 A G OPN3 3'UTR 0.55 TCGA-BQ-7051-01 1 2436173 2436173 G A PLCH2 3'UTR 0.36 TCGA-BQ-7051-01 1 40362992 40362992 A - MYCL 3'UTR 0.30 TCGA-BQ-7051-01 1 42048585 42048585 A T HIVEP3 Silent p.L628L 0.38 TCGA-BQ-7051-01 1 47402352 47402352 G C CYP4A11 Missense_Mutation p.S165C 0.36 deleterious(0.05) benign(0.443) TCGA-BQ-7051-01 1 52902541 52902541 G T ZCCHC11 Silent p.R1350R 0.45 TCGA-BQ-7051-01 1 59042130 59042131 CT - TACSTD2 Frame_Shift_Del p.E233Vfs*143 0.17 TCGA-BQ-7051-01 1 90475714 90475714 A G ZNF326 Missense_Mutation p.N228S 0.05 tolerated(0.24) benign(0.003) TCGA-BQ-7051-01 20 40043694 40043694 A G CHD6 Intron 0.62 TCGA-BQ-7051-01 20 41100970 41100970 G A PTPRT Silent p.L462L 0.34 TCGA-BQ-7051-01 20 62366823 62366823 T C ZGPAT Missense_Mutation p.L455P 0.60 deleterious(0) probably_damaging(1) TCGA-BQ-7051-01 22 32002357 32002357 G C SFI1 Missense_Mutation p.D700H 0.40 tolerated(0.3) possibly_damaging(0.779) TCGA-BQ-7051-01 22 37578251 37578251 G C C1QTNF6 Missense_Mutation p.L272V 0.52 deleterious(0) probably_damaging(0.998) TCGA-BQ-7051-01 22 43213794 43213794 A G ARFGAP3 Silent p.I294I 0.47 TCGA-BQ-7051-01 2 109002781 109002781 T C SULT1C4 Missense_Mutation p.I250T 0.49 deleterious(0.03) benign(0.131) TCGA-BQ-7051-01 2 109370389 109370389 A T RANBP2 Missense_Mutation p.I722L 0.34 tolerated(1) benign(0) TCGA-BQ-7051-01 2 154334999 154334999 C T RPRM Silent p.V27V 0.47 TCGA-BQ-7051-01 2 171375969 171375969 G A MYO3B Missense_Mutation p.R1165H 0.35 tolerated_low_confidence(0.36) benign(0.001) TCGA-BQ-7051-01 2 178098803 178098803 C A NFE2L2 Missense_Mutation p.G81V 0.53 deleterious(0) probably_damaging(1) TCGA-BQ-7051-01 2 232663673 232663673 A G COPS7B Missense_Mutation p.E212G 0.44 deleterious(0) possibly_damaging(0.494) TCGA-BQ-7051-01 2 95815880 95815880 C T ZNF514 Missense_Mutation p.C117Y 0.41 tolerated(0.24) benign(0.002) TCGA-BQ-7051-01 3 108282018 108282018 C A KIAA1524 Missense_Mutation p.R530I 0.37 tolerated(0.07) possibly_damaging(0.575) TCGA-BQ-7051-01 3 129290142 129290142 C G PLXND1 Missense_Mutation p.C1114S 0.40 deleterious(0.02) benign(0.259) TCGA-BQ-7051-01 3 38317429 38317429 T C SLC22A13 Missense_Mutation p.L360P 0.36 deleterious(0) probably_damaging(0.994) TCGA-BQ-7051-01 3 45773632 45773632 A T SACM1L Missense_Mutation p.Q363H 0.46 deleterious(0.04) benign(0.153) TCGA-BQ-7051-01 3 50252997 50252997 T C SLC38A3 RNA 0.40 TCGA-BQ-7051-01 3 52282683 52282683 C T PPM1M Silent p.L103L 0.46 TCGA-BQ-7051-01 3 57827089 57827089 T C SLMAP Missense_Mutation p.L137P 0.46 tolerated(0.25) benign(0.037) TCGA-BQ-7051-01 3 64536694 64536703 CACCACCTTG - ADAMTS9 Frame_Shift_Del p.K1579Vfs*16 0.28 TCGA-BQ-7051-01 4 2160925 2160925 C T POLN Missense_Mutation p.R523Q 0.39 tolerated(1) benign(0.003) TCGA-BQ-7051-01 4 40778094 40778094 C A NSUN7 Missense_Mutation p.S285Y 0.46 deleterious(0) probably_damaging(0.976) TCGA-BQ-7051-01 4 436019 436019 A C ZNF721 Missense_Mutation p.I746S 0.35 deleterious(0.01) possibly_damaging(0.733) TCGA-BQ-7051-01 4 57861558 57861558 C A POLR2B Missense_Mutation p.L240M 0.44 tolerated(0.47) benign(0.048) TCGA-BQ-7051-01 4 57891054 57891054 A G POLR2B Silent p.V989V 0.43 TCGA-BQ-7051-01 5 138268291 138268291 G A CTNNA1 Missense_Mutation p.D775N 0.55 deleterious(0) possibly_damaging(0.741) TCGA-BQ-7051-01 5 139864824 139864824 T C ANKHD1 Silent p.H663H 0.38 TCGA-BQ-7051-01 5 140021512 140021512 G A TMCO6 Silent p.L124L 0.40 TCGA-BQ-7051-01 5 54591351 54591351 A G DHX29 Silent p.D169D 0.43 TCGA-BQ-7051-01 5 66448594 66448594 T C MAST4 Missense_Mutation p.I1142T 0.52 probably_damaging(0.947) TCGA-BQ-7051-01 6 158450005 158450005 C T SYNJ2 Silent p.V144V 0.39 TCGA-BQ-7051-01 6 31431377 31431377 G T HCP5 RNA 0.55 TCGA-BQ-7051-01 6 31627425 31627425 A G C6orf47 Silent p.T100T 0.38 TCGA-BQ-7051-01 6 33380325 33380325 A T PHF1 Missense_Mutation p.D67V 0.39 deleterious(0) probably_damaging(1) TCGA-BQ-7051-01 6 42152609 42152609 C A GUCA1B Missense_Mutation p.D183Y 0.53 deleterious(0) benign(0.272) TCGA-BQ-7051-01 7 102724230 102724230 A G ARMC10 Missense_Mutation p.R116G 0.32 tolerated(0.1) benign(0.072) TCGA-BQ-7051-01 7 151880116 151880116 A - KMT2C Frame_Shift_Del p.F1736Lfs*5 0.44 TCGA-BQ-7051-01 7 16505323 16505323 G A SOSTDC1 5'UTR 0.41 TCGA-BQ-7051-01 7 21678590 21678590 C A DNAH11 Nonsense_Mutation p.Y1622* 0.26 TCGA-BQ-7051-01 8 142238284 142238284 G A SLC45A4 Nonsense_Mutation p.Q28* 0.43 TCGA-BQ-7051-01 8 55534829 55534829 A G RP1 Silent p.A256A 0.35 TCGA-BQ-7051-01 8 98943606 98943609 CTAA - MATN2 Frame_Shift_Del p.L190Sfs*9 0.41 TCGA-BQ-7051-01 8 99152324 99152324 G T POP1 Nonsense_Mutation p.E461* 0.43 TCGA-BQ-7051-01 X 130215818 130215818 G A ARHGAP36 Missense_Mutation p.R60H 0.91 deleterious(0) probably_damaging(0.999) TCGA-BQ-7051-01 X 47432308 47432308 G C SYN1 Silent p.T691T 0.96 TCGA-BQ-7051-01 X 55744773 55744773 G A RRAGB Missense_Mutation p.D5N 0.90 deleterious_low_confidence(0.05) unknown(0) TCGA-BQ-7051-01 X 65390505 65390505 C T HEPH Silent p.G85G 0.82 TCGA-BQ-7053-01 10 53227571 53227571 C G PRKG1 Missense_Mutation p.N189K 0.34 deleterious(0) probably_damaging(0.985) TCGA-BQ-7053-01 10 73406335 73406335 C T CDH23 Silent p.Y62Y 0.31 TCGA-BQ-7053-01 10 7708856 7708856 G T ITIH5 5'UTR 0.49 TCGA-BQ-7053-01 11 46401423 46401423 G T DGKZ Nonsense_Mutation p.E1094* 0.31 TCGA-BQ-7053-01 11 66636376 66636376 G T PC Nonsense_Mutation p.Y321* 0.31 TCGA-BQ-7053-01 12 102147162 102147162 T C GNPTAB Missense_Mutation p.E1197G 0.33 tolerated(0.07) probably_damaging(0.999) TCGA-BQ-7053-01 12 113565934 113565934 T A RASAL1 Missense_Mutation p.T58S 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-BQ-7053-01 12 115112487 115112488 GC - TBX3 Frame_Shift_Del p.A418Cfs*2 0.42 TCGA-BQ-7053-01 13 23906994 23906994 T C SACS Missense_Mutation p.N3674S 0.41 probably_damaging(0.978) TCGA-BQ-7053-01 13 41706340 41706340 C T KBTBD6 Missense_Mutation p.G103D 0.40 deleterious(0) probably_damaging(0.997) TCGA-BQ-7053-01 15 30665308 30665308 A - CHRFAM7A Frame_Shift_Del p.F69Lfs*8 0.29 TCGA-BQ-7053-01 15 35083348 35083348 G T ACTC1 Silent p.I319I 0.35 TCGA-BQ-7053-01 15 91009552 91009552 G T IQGAP1 Missense_Mutation p.G640V 0.26 tolerated(0.21) benign(0.001) TCGA-BQ-7053-01 16 58620607 58620607 T C CNOT1 Missense_Mutation p.Y160C 0.28 deleterious(0) probably_damaging(0.944) TCGA-BQ-7053-01 16 81298288 81298288 A G BCMO1 Missense_Mutation p.H172R 0.29 deleterious(0) probably_damaging(0.987) TCGA-BQ-7053-01 17 27049565 27049565 C T RPL23A Intron 0.35 TCGA-BQ-7053-01 17 60040331 60040331 T G MED13 Missense_Mutation p.T1616P 0.25 deleterious(0.02) probably_damaging(0.979) TCGA-BQ-7053-01 17 73746316 73746316 G A ITGB4 Nonsense_Mutation p.W1147* 0.52 TCGA-BQ-7053-01 18 50683788 50683788 A T DCC Missense_Mutation p.S442C 0.32 deleterious(0) probably_damaging(0.991) TCGA-BQ-7053-01 19 1061844 1061844 G A ABCA7 Missense_Mutation p.D1843N 0.25 deleterious(0.03) benign(0.134) TCGA-BQ-7053-01 19 17615314 17615314 C T SLC27A1 Missense_Mutation p.R612C 0.28 deleterious(0.05) benign(0.006) TCGA-BQ-7053-01 19 46294234 46294234 C A DMWD Missense_Mutation p.G185C 0.32 deleterious(0) probably_damaging(0.979) TCGA-BQ-7053-01 19 52448014 52448014 G T ZNF613 Missense_Mutation p.C293F 0.29 deleterious(0) probably_damaging(1) TCGA-BQ-7053-01 19 6760836 6760836 A G SH2D3A Missense_Mutation p.F78L 0.31 deleterious(0.03) benign(0.269) TCGA-BQ-7053-01 19 7976338 7976338 A G MAP2K7 Silent p.G318G 0.30 TCGA-BQ-7053-01 1 160523192 160523192 A G CD84 Missense_Mutation p.F246L 0.37 tolerated(0.29) benign(0.012) TCGA-BQ-7053-01 1 16258648 16258648 T C SPEN Silent p.P1971P 0.31 TCGA-BQ-7053-01 20 60927089 60927089 G T LAMA5 Missense_Mutation p.S245Y 0.35 probably_damaging(0.996) TCGA-BQ-7053-01 21 37442615 37442632 CAGAGCATCCGCGCCCTG AAGCCCTC CBR1 Frame_Shift_Del p.Q68Kfs*39 0.23 TCGA-BQ-7053-01 21 39672237 39672239 GAG - KCNJ15 In_Frame_Del p.E353del 0.30 TCGA-BQ-7053-01 22 22712454 22712454 T C IGLV1-47 Missense_Mutation p.L66P 0.33 deleterious_low_confidence(0) benign(0.134) TCGA-BQ-7053-01 22 40803806 40803806 A C SGSM3 Missense_Mutation p.K513T 0.29 deleterious(0) probably_damaging(0.943) TCGA-BQ-7053-01 2 197767380 197767380 C T PGAP1 Missense_Mutation p.D246N 0.36 deleterious(0.01) probably_damaging(1) TCGA-BQ-7053-01 2 238636568 238636568 G C LRRFIP1 Intron 0.34 TCGA-BQ-7053-01 2 96781259 96781259 C T ADRA2B Silent p.K210K 0.15 TCGA-BQ-7053-01 3 155654202 155654202 A T GMPS Missense_Mutation p.Q628L 0.29 tolerated(0.32) benign(0.003) TCGA-BQ-7053-01 3 169940480 169940480 G A PRKCI Missense_Mutation p.S8N 0.25 tolerated_low_confidence(0.31) benign(0) TCGA-BQ-7053-01 3 185146747 185146747 C T MAP3K13 Silent p.G126G 0.29 TCGA-BQ-7053-01 3 23942484 23942484 G A NKIRAS1 Nonsense_Mutation p.R51* 0.29 TCGA-BQ-7053-01 3 51457622 51457622 C G VPRBP Silent p.R505R 0.41 TCGA-BQ-7053-01 4 151935707 151935707 C A LRBA Missense_Mutation p.G30W 0.38 deleterious_low_confidence(0) benign(0) TCGA-BQ-7053-01 4 154237027 154237027 G - TRIM2 Frame_Shift_Del p.G554Dfs*21 0.33 TCGA-BQ-7053-01 4 6303094 6303094 C T WFS1 Silent p.F524F 0.40 TCGA-BQ-7053-01 4 73280662 73280662 T A ADAMTS3 Missense_Mutation p.E177D 0.10 tolerated(1) benign(0.003) TCGA-BQ-7053-01 5 1245991 1245991 T G SLC6A18 Missense_Mutation p.L562R 0.14 tolerated(0.48) possibly_damaging(0.492) TCGA-BQ-7053-01 5 129030431 129030431 T G ADAMTS19 Missense_Mutation p.V940G 0.32 deleterious(0) probably_damaging(0.954) TCGA-BQ-7053-01 5 82406899 82406899 G T XRCC4 Silent p.G64G 0.39 TCGA-BQ-7053-01 5 96139212 96139212 G A ERAP1 Missense_Mutation p.L140F 0.40 tolerated(0.15) benign(0.012) TCGA-BQ-7053-01 6 31677862 31677862 A T LY6G6F Missense_Mutation p.I236F 0.33 deleterious(0) benign(0.024) TCGA-BQ-7053-01 6 52617715 52617715 T A GSTA2 Missense_Mutation p.Q117H 0.35 deleterious(0.02) benign(0.351) TCGA-BQ-7053-01 6 75975041 75975042 AT - TMEM30A Frame_Shift_Del p.M120Vfs*6 0.33 TCGA-BQ-7053-01 7 29135764 29135764 G T CPVL Missense_Mutation p.L120I 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-BQ-7053-01 8 109215296 109215296 A T EIF3E Silent p.I405I 0.37 TCGA-BQ-7053-01 8 123965471 123965471 A G ZHX2 Missense_Mutation p.D574G 0.36 deleterious(0) possibly_damaging(0.799) TCGA-BQ-7053-01 8 144811207 144811207 A G FAM83H Missense_Mutation p.S223P 0.30 deleterious(0) probably_damaging(0.997) TCGA-BQ-7053-01 8 37963231 37963231 C T ASH2L Missense_Mutation p.P55S 0.24 tolerated_low_confidence(0.06) possibly_damaging(0.857) TCGA-BQ-7053-01 9 103059359 103059359 C A INVS Missense_Mutation p.P983T 0.60 tolerated_low_confidence(0.94) benign(0.002) TCGA-BQ-7053-01 9 36123065 36123065 G A RECK 3'UTR 0.35 TCGA-BQ-7053-01 9 39140600 39140600 G A CNTNAP3 Nonsense_Mutation p.R598* 0.38 TCGA-BQ-7053-01 X 101096014 101096014 T A NXF5 Nonsense_Mutation p.K152* 0.27 TCGA-BQ-7053-01 X 69898664 69898664 C T TEX11 Missense_Mutation p.S426N 0.32 deleterious(0.01) benign(0.288) TCGA-BQ-7053-01 X 73071036 73071061 AAACCCGCCATCTTTAACAATGCGGC - XIST RNA 0.35 TCGA-BQ-7055-01 11 61183647 61183647 G T CPSF7 Missense_Mutation p.P342T 0.04 deleterious(0.05) probably_damaging(0.938) TCGA-BQ-7055-01 11 64522811 64522811 G A PYGM Silent p.Y263Y 0.05 TCGA-BQ-7055-01 12 107399011 107399011 T C CRY1 Missense_Mutation p.K95E 0.37 tolerated(0.11) benign(0.217) TCGA-BQ-7055-01 19 51135675 51135675 G A SYT3 Missense_Mutation p.P181L 0.31 tolerated(0.18) benign(0) TCGA-BQ-7055-01 19 57869057 57869057 G A ZNF304 Missense_Mutation p.R607K 0.22 tolerated(0.12) probably_damaging(0.999) TCGA-BQ-7055-01 1 35579564 35579564 A G ZMYM1 Missense_Mutation p.I711M 0.12 tolerated(0.13) benign(0.181) TCGA-BQ-7055-01 22 18844823 18844823 C A BCRP7 Splice_Site 0.30 TCGA-BQ-7055-01 2 105886051 105886051 G A TGFBRAP1 Missense_Mutation p.A695V 0.16 deleterious(0) probably_damaging(0.941) TCGA-BQ-7055-01 2 179659659 179659659 C T TTN Missense_Mutation p.G412D 0.37 TCGA-BQ-7055-01 3 49200861 49200862 CT - CCDC71 Frame_Shift_Del p.R260Sfs*48 0.26 TCGA-BQ-7055-01 6 49931770 49931770 G A DEFB114 Silent p.L17L 0.19 TCGA-BQ-7056-01 10 104118958 104118958 G C GBF1 Intron 0.45 TCGA-BQ-7056-01 10 134012450 134012450 C T DPYSL4 Silent p.D262D 0.11 TCGA-BQ-7056-01 10 76868897 76868897 G A DUSP13 Missense_Mutation p.P7S 0.42 tolerated_low_confidence(0.15) probably_damaging(0.932) TCGA-BQ-7056-01 11 108206609 108206609 A C ATM Missense_Mutation p.Q2730P 0.31 deleterious(0) probably_damaging(0.996) TCGA-BQ-7056-01 11 111753250 111753250 C T C11orf1 Silent p.T68T 0.35 TCGA-BQ-7056-01 11 66272197 66272197 C T DPP3 Missense_Mutation p.R665C 0.07 deleterious(0) possibly_damaging(0.542) TCGA-BQ-7056-01 11 70282380 70282380 C G CTTN Intron 0.44 TCGA-BQ-7056-01 11 77412531 77412531 G T RSF1 Silent p.I581I 0.37 TCGA-BQ-7056-01 12 12311914 12311914 G A LRP6 Silent p.L880L 0.38 TCGA-BQ-7056-01 12 49319118 49319118 C G FKBP11 Missense_Mutation p.E32Q 0.38 tolerated(0.1) possibly_damaging(0.655) TCGA-BQ-7056-01 12 53895924 53895925 - T TARBP2 Frame_Shift_Ins p.N61* 0.34 TCGA-BQ-7056-01 12 80626779 80626779 G A OTOGL Missense_Mutation p.G231E 0.44 deleterious(0) probably_damaging(0.949) TCGA-BQ-7056-01 14 96152848 96152848 G A TCL1B Missense_Mutation p.R15H 0.46 tolerated(0.6) possibly_damaging(0.688) TCGA-BQ-7056-01 15 35529913 35529913 C G ANP32AP1 RNA 0.31 TCGA-BQ-7056-01 15 63978661 63978661 T C HERC1 Missense_Mutation p.Q2041R 0.43 possibly_damaging(0.714) TCGA-BQ-7056-01 15 70371784 70371784 C T TLE3 Intron 0.38 TCGA-BQ-7056-01 15 85400008 85400009 - A ALPK3 Frame_Shift_Ins p.Q883Tfs*10 0.37 TCGA-BQ-7056-01 16 67840265 67840265 G A RANBP10 Missense_Mutation p.P59S 0.25 tolerated(0.16) benign(0.003) TCGA-BQ-7056-01 16 69602415 69602415 C A NFAT5 Missense_Mutation p.P31T 0.27 benign(0.014) TCGA-BQ-7056-01 17 11520831 11520831 G C DNAH9 Silent p.R336R 0.25 TCGA-BQ-7056-01 18 11887001 11887001 G A MPPE1 Missense_Mutation p.A198V 0.46 deleterious(0) probably_damaging(0.975) TCGA-BQ-7056-01 18 9535719 9535719 C G RALBP1 Missense_Mutation p.I584M 0.56 deleterious(0.01) benign(0.025) TCGA-BQ-7056-01 19 44377748 44377748 C G ZNF404 Missense_Mutation p.Q206H 0.40 tolerated(0.11) probably_damaging(0.986) TCGA-BQ-7056-01 19 53014896 53014896 A C ZNF578 Missense_Mutation p.H421P 0.06 deleterious(0) probably_damaging(0.993) TCGA-BQ-7056-01 19 55144747 55144747 C A LILRB1 Missense_Mutation p.D413E 0.34 tolerated(1) benign(0.002) TCGA-BQ-7056-01 19 8661946 8661946 A C ADAMTS10 Missense_Mutation p.V322G 0.41 deleterious(0.04) benign(0.34) TCGA-BQ-7056-01 1 152276908 152276908 G A FLG Missense_Mutation p.A3485V 0.34 unknown(0) TCGA-BQ-7056-01 1 226109611 226109611 C G PYCR2 Missense_Mutation p.E163Q 0.24 tolerated(0.19) possibly_damaging(0.523) TCGA-BQ-7056-01 1 53287196 53287196 T C ZYG11B Silent p.H710H 0.45 TCGA-BQ-7056-01 2 1488542 1488542 G A TPO Missense_Mutation p.D505N 0.10 tolerated(0.48) benign(0.06) TCGA-BQ-7056-01 2 179443931 179443931 A G TTN Missense_Mutation p.I22609T 0.23 TCGA-BQ-7056-01 3 154006708 154006708 C T DHX36 Missense_Mutation p.D660N 0.28 tolerated(0.1) benign(0.196) TCGA-BQ-7056-01 3 48602253 48602253 G A COL7A1 Silent p.R2927R 0.47 TCGA-BQ-7056-01 3 51431021 51431021 A T RBM15B Missense_Mutation p.S731C 0.10 deleterious(0) probably_damaging(1) TCGA-BQ-7056-01 4 70513331 70513331 T C UGT2A1 Missense_Mutation p.Q11R 0.32 deleterious(0.03) benign(0.02) TCGA-BQ-7056-01 4 76489342 76489342 C T C4orf26 Missense_Mutation p.R44C 0.43 deleterious_low_confidence(0.04) benign(0.001) TCGA-BQ-7056-01 5 140798706 140798706 G A PCDHGB7 Missense_Mutation p.R427K 0.10 tolerated(0.82) benign(0.052) TCGA-BQ-7056-01 5 36035804 36035804 G A UGT3A2 Missense_Mutation p.T523I 0.35 deleterious(0.03) possibly_damaging(0.629) TCGA-BQ-7056-01 5 55088515 55088515 G T DDX4 Missense_Mutation p.R450L 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-BQ-7056-01 7 128641219 128641219 T C TNPO3 Missense_Mutation p.I256V 0.37 tolerated(0.37) benign(0.016) TCGA-BQ-7056-01 7 75616533 75616533 T C POR 3'Flank 0.47 TCGA-BQ-7056-01 8 133836263 133836264 - A PHF20L1 Frame_Shift_Ins p.V535Sfs*13 0.53 TCGA-BQ-7056-01 8 144103270 144103270 C G LY6E 3'UTR 0.10 TCGA-BQ-7056-01 X 117707873 117707873 G A DOCK11 Missense_Mutation p.M427I 0.48 deleterious(0.02) benign(0.445) TCGA-BQ-7056-01 X 1720241 1720241 C T AKAP17A Silent p.D614D 0.35 TCGA-BQ-7058-01 10 115381720 115381720 C T NRAP Missense_Mutation p.V893I 0.36 tolerated(0.63) benign(0) TCGA-BQ-7058-01 10 70670998 70670998 C T DDX50 Missense_Mutation p.P212L 0.07 deleterious(0) probably_damaging(0.982) TCGA-BQ-7058-01 10 74906091 74906091 C G ECD Missense_Mutation p.R357P 0.16 tolerated(0.1) possibly_damaging(0.587) TCGA-BQ-7058-01 10 75676325 75676325 G A PLAU 3'UTR 0.38 TCGA-BQ-7058-01 10 76468112 76468112 T C ADK Missense_Mutation p.L333P 0.36 deleterious(0.03) benign(0.131) TCGA-BQ-7058-01 11 2466713 2466713 G A KCNQ1 Missense_Mutation p.V129I 0.37 tolerated(0.06) benign(0.331) TCGA-BQ-7058-01 11 281108 281108 G C NLRP6 Silent p.A458A 0.37 TCGA-BQ-7058-01 11 57982376 57982376 G A OR1S1 Missense_Mutation p.G54R 0.40 deleterious(0) probably_damaging(0.978) TCGA-BQ-7058-01 11 64084953 64084953 C - TRMT112 Frame_Shift_Del p.V16Wfs*30 0.29 TCGA-BQ-7058-01 11 65113439 65113439 T C DPF2 Missense_Mutation p.Y272H 0.43 deleterious(0) probably_damaging(0.993) TCGA-BQ-7058-01 11 66488565 66488565 C G SPTBN2 Missense_Mutation p.K49N 0.53 deleterious(0) probably_damaging(0.979) TCGA-BQ-7058-01 11 82877707 82877707 A C PCF11 Missense_Mutation p.S590R 0.36 tolerated(0.14) benign(0.347) TCGA-BQ-7058-01 12 662534 662534 C A B4GALNT3 Missense_Mutation p.P482H 0.32 deleterious(0.02) benign(0.302) TCGA-BQ-7058-01 12 88548132 88548132 A G TMTC3 Missense_Mutation p.Y159C 0.35 deleterious(0) probably_damaging(0.998) TCGA-BQ-7058-01 13 41134463 41134471 CAGTTAATG A FOXO1 Frame_Shift_Del p.S386Ffs*58 0.28 TCGA-BQ-7058-01 13 47345444 47345444 A G ESD 3'UTR 0.40 TCGA-BQ-7058-01 14 24911829 24911829 T A SDR39U1 Intron 0.38 TCGA-BQ-7058-01 14 31598378 31598378 C A HECTD1 Missense_Mutation p.G1400V 0.33 tolerated(0.05) benign(0.032) TCGA-BQ-7058-01 14 52474565 52474565 A - NID2 Frame_Shift_Del p.F1281Lfs*42 0.28 TCGA-BQ-7058-01 14 58666932 58666932 T A ACTR10 5'UTR 0.34 TCGA-BQ-7058-01 14 71413816 71413816 G T PCNX Missense_Mutation p.R113M 0.35 tolerated(0.07) possibly_damaging(0.642) TCGA-BQ-7058-01 14 73959882 73959882 G A HEATR4 Intron 0.35 TCGA-BQ-7058-01 14 78399782 78399782 C A ADCK1 3'UTR 0.47 TCGA-BQ-7058-01 14 96152792 96152792 T C TCL1B 5'UTR 0.33 TCGA-BQ-7058-01 15 64005696 64005696 G C HERC1 Missense_Mutation p.A1440G 0.36 benign(0.004) TCGA-BQ-7058-01 15 65496681 65496681 A T CILP Missense_Mutation p.F282I 0.41 deleterious(0) probably_damaging(0.989) TCGA-BQ-7058-01 16 29115468 29115468 G A CTB-134H23.3 RNA 0.10 TCGA-BQ-7058-01 16 4245669 4245669 A C SRL Missense_Mutation p.F165L 0.70 deleterious(0.04) benign(0.137) TCGA-BQ-7058-01 16 90124613 90124613 T G PRDM7 3'UTR 0.33 TCGA-BQ-7058-01 17 26490600 26490600 A G NLK Silent p.L261L 0.34 TCGA-BQ-7058-01 17 48226606 48226607 - G PPP1R9B Frame_Shift_Ins p.Y423Lfs*58 0.27 TCGA-BQ-7058-01 17 53045784 53045784 T G COX11 Missense_Mutation p.K75T 0.51 tolerated(0.12) benign(0.023) TCGA-BQ-7058-01 17 62500170 62500170 T C DDX5 Silent p.G124G 0.59 TCGA-BQ-7058-01 17 72745286 72745286 A T SLC9A3R1 Nonsense_Mutation p.K101* 0.52 TCGA-BQ-7058-01 17 80038618 80038618 C T FASN Missense_Mutation p.S2259N 0.22 tolerated(0.3) benign(0.001) TCGA-BQ-7058-01 18 21819191 21819191 C A OSBPL1A Silent p.A479A 0.06 TCGA-BQ-7058-01 18 2554953 2554953 G C METTL4 Missense_Mutation p.Q182E 0.62 tolerated(1) benign(0.001) TCGA-BQ-7058-01 19 11944519 11944519 A C ZNF440 3'UTR 0.40 TCGA-BQ-7058-01 19 12807385 12807385 G T FBXW9 Missense_Mutation p.P4H 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BQ-7058-01 19 38976604 38976604 C T RYR1 Missense_Mutation p.S1770L 0.49 benign(0.365) TCGA-BQ-7058-01 19 4013072 4013072 A C PIAS4 Missense_Mutation p.E60A 0.47 deleterious(0) possibly_damaging(0.724) TCGA-BQ-7058-01 19 43237192 43237192 G T PSG3 Silent p.I151I 0.39 TCGA-BQ-7058-01 19 49377875 49377875 G A PPP1R15A Missense_Mutation p.G462E 0.28 tolerated(0.36) benign(0.002) TCGA-BQ-7058-01 19 746543 746543 T G PALM Missense_Mutation p.V298G 0.35 deleterious(0) probably_damaging(1) TCGA-BQ-7058-01 1 147086309 147086309 A C BCL9 Silent p.R152R 0.39 TCGA-BQ-7058-01 1 147086367 147086367 A G BCL9 Missense_Mutation p.K171R 0.54 deleterious(0.02) probably_damaging(0.98) TCGA-BQ-7058-01 1 152733695 152733695 G A KPRP Missense_Mutation p.G544D 0.45 tolerated_low_confidence(0.2) benign(0.198) TCGA-BQ-7058-01 1 207131803 207131803 A T FCAMR 3'UTR 0.41 TCGA-BQ-7058-01 1 236195870 236195870 A G NID1 Silent p.T456T 0.38 TCGA-BQ-7058-01 1 247597496 247597496 G T NLRP3 Missense_Mutation p.D807Y 0.33 tolerated(0.56) possibly_damaging(0.616) TCGA-BQ-7058-01 1 40307511 40307511 T C TRIT1 Missense_Mutation p.I437V 0.40 tolerated(0.56) benign(0) TCGA-BQ-7058-01 1 67423741 67423741 G C MIER1 Splice_Site p.X114_splice 0.28 TCGA-BQ-7058-01 1 78163088 78163088 C A USP33 Missense_Mutation p.V915F 0.35 deleterious(0) probably_damaging(0.911) TCGA-BQ-7058-01 1 94668261 94668261 C A ARHGAP29 Missense_Mutation p.A328S 0.33 deleterious(0.03) benign(0.098) TCGA-BQ-7058-01 20 29623163 29623163 T A FRG1B 5'UTR 0.02 TCGA-BQ-7058-01 20 50139902 50139902 C G NFATC2 Missense_Mutation p.G293A 0.32 tolerated(0.21) benign(0.006) TCGA-BQ-7058-01 21 47333926 47333926 T G PCBP3 Missense_Mutation p.F221C 0.40 tolerated(0.05) benign(0.031) TCGA-BQ-7058-01 22 18769720 18769720 G A GGT3P RNA 0.13 TCGA-BQ-7058-01 2 109379713 109379713 T C RANBP2 Silent p.N906N 0.30 TCGA-BQ-7058-01 2 185802049 185802049 G T ZNF804A Missense_Mutation p.Q642H 0.38 tolerated(0.26) benign(0.001) TCGA-BQ-7058-01 2 190428768 190428768 G A SLC40A1 Missense_Mutation p.A315V 0.42 deleterious(0) possibly_damaging(0.639) TCGA-BQ-7058-01 2 190428774 190428774 C G SLC40A1 Missense_Mutation p.G313A 0.39 tolerated(0.27) benign(0.014) TCGA-BQ-7058-01 2 219319519 219319519 C G USP37 3'UTR 0.33 TCGA-BQ-7058-01 2 219319549 219319549 T A USP37 3'UTR 0.27 TCGA-BQ-7058-01 2 32726845 32726845 G A BIRC6 Missense_Mutation p.G3033R 0.20 probably_damaging(0.999) TCGA-BQ-7058-01 2 37280725 37280725 C A HEATR5B Nonsense_Mutation p.E809* 0.30 TCGA-BQ-7058-01 3 122821610 122821610 T A PDIA5 Missense_Mutation p.F118L 0.88 deleterious(0) probably_damaging(0.998) TCGA-BQ-7058-01 3 51456171 51456171 G T VPRBP Missense_Mutation p.N703K 0.82 tolerated(0.33) benign(0.004) TCGA-BQ-7058-01 3 52584609 52584609 A T PBRM1 Nonsense_Mutation p.Y1468* 0.73 TCGA-BQ-7058-01 3 99513269 99513269 C T COL8A1 Missense_Mutation p.P175L 0.84 deleterious(0.01) unknown(0) TCGA-BQ-7058-01 4 109084775 109084775 A C LEF1 Missense_Mutation p.N121K 0.39 tolerated(0.41) possibly_damaging(0.5) TCGA-BQ-7058-01 4 151827549 151827549 A - LRBA Frame_Shift_Del p.L501Cfs*9 0.26 TCGA-BQ-7058-01 4 155226303 155226303 C A DCHS2 Missense_Mutation p.V1326L 0.38 tolerated(0.39) benign(0.095) TCGA-BQ-7058-01 4 71114720 71114720 T A CSN3 Missense_Mutation p.H31Q 0.09 tolerated(0.29) benign(0) TCGA-BQ-7058-01 4 74364944 74364944 T C AFM Missense_Mutation p.F468S 0.35 deleterious(0) probably_damaging(0.946) TCGA-BQ-7058-01 4 88029422 88029422 A T AFF1 Silent p.S496S 0.12 TCGA-BQ-7058-01 5 14609077 14609077 T C FAM105A Missense_Mutation p.F283S 0.36 deleterious(0) probably_damaging(0.999) TCGA-BQ-7058-01 6 7889004 7889004 A C TXNDC5 Silent p.T299T 0.41 TCGA-BQ-7058-01 7 108112970 108112970 C T PNPLA8 Missense_Mutation p.E742K 0.32 deleterious(0.01) benign(0.15) TCGA-BQ-7058-01 7 120496861 120496861 T C TSPAN12 5'UTR 0.54 TCGA-BQ-7058-01 7 27182960 27182966 CGGCTGG - HOXA5 Frame_Shift_Del p.S87Rfs*34 0.28 TCGA-BQ-7058-01 7 2963967 2963967 A T CARD11 Missense_Mutation p.S614T 0.35 tolerated(0.14) benign(0.014) TCGA-BQ-7058-01 7 54820079 54820079 T C SEC61G 3'UTR 0.21 TCGA-BQ-7058-01 7 96318107 96318107 A T SHFM1 3'UTR 0.60 TCGA-BQ-7058-01 8 120429171 120429171 G C NOV Missense_Mutation p.R91P 0.44 deleterious(0.04) possibly_damaging(0.854) TCGA-BQ-7058-01 8 35541184 35541184 C T UNC5D Silent p.T230T 0.38 TCGA-BQ-7058-01 8 95158391 95158391 C - CDH17 Frame_Shift_Del p.S645Lfs*3 0.30 TCGA-BQ-7058-01 9 118969850 118969850 C T PAPPA Missense_Mutation p.P532S 0.33 deleterious(0) possibly_damaging(0.876) TCGA-BQ-7058-01 9 119495750 119495750 T A ASTN2 Missense_Mutation p.I766F 0.10 deleterious(0.04) unknown(0) TCGA-BQ-7058-01 9 141070113 141070113 T C TUBBP5 RNA 0.17 TCGA-BQ-7058-01 9 85597649 85597649 A C RASEF Missense_Mutation p.N722K 0.32 tolerated(0.55) benign(0.004) TCGA-BQ-7058-01 X 101912417 101912418 TC - GPRASP1 Frame_Shift_Del p.I1192Mfs*10 0.43 TCGA-BQ-7058-01 X 63412033 63412033 A G AMER1 Silent p.D378D 0.08 TCGA-BQ-7059-01 10 22171214 22171214 T - DNAJC1 Frame_Shift_Del p.K325Nfs*14 0.18 TCGA-BQ-7059-01 10 27687672 27687673 - GTATAT PTCHD3 In_Frame_Ins p.I617_Y618dup 0.12 TCGA-BQ-7059-01 11 100863392 100863392 T A TMEM133 Missense_Mutation p.L118H 0.20 deleterious_low_confidence(0.03) probably_damaging(0.938) TCGA-BQ-7059-01 11 118516164 118516166 ACG CC PHLDB1 Frame_Shift_Del p.H1071Pfs*42 0.34 TCGA-BQ-7059-01 11 120745883 120745883 C T GRIK4 Silent p.F365F 0.17 TCGA-BQ-7059-01 11 125880565 125880565 A T CDON Missense_Mutation p.I408N 0.24 deleterious(0.02) possibly_damaging(0.774) TCGA-BQ-7059-01 11 3846145 3846145 G A PGAP2 Intron 0.22 TCGA-BQ-7059-01 11 64679328 64679328 T A ATG2A Missense_Mutation p.Q405L 0.28 tolerated(0.65) benign(0.027) TCGA-BQ-7059-01 11 66282135 66282135 A G BBS1 Missense_Mutation p.N140D 0.20 tolerated(0.31) benign(0.006) TCGA-BQ-7059-01 12 111070319 111070319 C T TCTN1 Missense_Mutation p.P223S 0.20 deleterious(0) probably_damaging(0.954) TCGA-BQ-7059-01 12 111908459 111908459 G C ATXN2 Missense_Mutation p.A1029G 0.36 probably_damaging(0.997) TCGA-BQ-7059-01 12 123806180 123806180 T C SBNO1 Missense_Mutation p.N742S 0.43 tolerated(0.92) benign(0) TCGA-BQ-7059-01 12 14927683 14927684 - T H2AFJ Frame_Shift_Ins p.L94Ffs*87 0.32 TCGA-BQ-7059-01 12 2716231 2716231 C T CACNA1C Silent p.D1117D 0.27 TCGA-BQ-7059-01 12 46633478 46633478 T A SLC38A1 Missense_Mutation p.N36Y 0.19 deleterious(0) probably_damaging(0.994) TCGA-BQ-7059-01 12 7982586 7982586 T A SLC2A14 Missense_Mutation p.I120F 0.19 tolerated(0.18) benign(0.064) TCGA-BQ-7059-01 14 64915025 64915025 A C MTHFD1 Missense_Mutation p.N757H 0.20 deleterious(0) probably_damaging(1) TCGA-BQ-7059-01 14 81744521 81744521 G A STON2 Silent p.H378H 0.22 TCGA-BQ-7059-01 14 96784101 96784101 C G ATG2B Missense_Mutation p.A991P 0.18 tolerated(0.32) probably_damaging(0.969) TCGA-BQ-7059-01 15 25427348 25427348 T G SNORD115-6 3'Flank 0.27 TCGA-BQ-7059-01 15 77087751 77087751 A T SCAPER Silent p.R214R 0.23 TCGA-BQ-7059-01 15 79606106 79606106 C G TMED3 Missense_Mutation p.T59S 0.17 tolerated(0.17) benign(0.016) TCGA-BQ-7059-01 16 2808492 2808492 T A SRRM2 Missense_Mutation p.S179R 0.18 unknown(0) TCGA-BQ-7059-01 16 30750805 30750805 T A SRCAP Missense_Mutation p.S3148R 0.14 benign(0.184) TCGA-BQ-7059-01 16 67233265 67233265 C A ELMO3 Silent p.I65I 0.18 TCGA-BQ-7059-01 17 21825491 21825491 G T FAM27L RNA 0.19 TCGA-BQ-7059-01 17 33289281 33289281 T C ZNF830 Silent p.H232H 0.29 TCGA-BQ-7059-01 17 38253601 38253601 A G NR1D1 Silent p.P29P 0.33 TCGA-BQ-7059-01 17 42083544 42083544 T C NAGS Missense_Mutation p.L285P 0.22 deleterious(0) probably_damaging(0.994) TCGA-BQ-7059-01 17 6012935 6012935 C G WSCD1 Silent p.P286P 0.23 TCGA-BQ-7059-01 17 79994491 79994491 C A DCXR Missense_Mutation p.G126V 0.20 deleterious(0) probably_damaging(0.961) TCGA-BQ-7059-01 19 10823458 10823458 A G QTRT1 Missense_Mutation p.T296A 0.19 tolerated(0.95) benign(0.024) TCGA-BQ-7059-01 19 15289675 15289675 C G NOTCH3 Missense_Mutation p.G1266R 0.33 deleterious(0.03) possibly_damaging(0.71) TCGA-BQ-7059-01 19 42219580 42219580 G A CEACAM5 Missense_Mutation p.A239T 0.28 tolerated(1) unknown(0) TCGA-BQ-7059-01 19 49230414 49230414 G T RASIP1 Missense_Mutation p.H625N 0.38 tolerated(0.71) benign(0.019) TCGA-BQ-7059-01 19 50397531 50397531 G C IL4I1 Silent p.L209L 0.17 TCGA-BQ-7059-01 19 51273914 51273914 G C GPR32 Silent p.L19L 0.18 TCGA-BQ-7059-01 19 5744442 5744442 A G CATSPERD Missense_Mutation p.E193G 0.14 tolerated(0.15) benign(0.058) TCGA-BQ-7059-01 19 58084258 58084258 A G ZNF416 Silent p.S338S 0.21 TCGA-BQ-7059-01 19 7619510 7619510 G A PNPLA6 Silent p.Q855Q 0.27 TCGA-BQ-7059-01 1 110034064 110034064 C A ATXN7L2 Missense_Mutation p.L627M 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.853) TCGA-BQ-7059-01 1 14149651 14149651 C G PRDM2 Intron 0.21 TCGA-BQ-7059-01 1 156811976 156811976 T G INSRR Missense_Mutation p.N1109H 0.27 deleterious(0.04) possibly_damaging(0.666) TCGA-BQ-7059-01 1 15793929 15793929 C T CELA2A Nonsense_Mutation p.Q230* 0.14 TCGA-BQ-7059-01 1 184476745 184476745 G T C1orf21 Nonsense_Mutation p.E40* 0.20 TCGA-BQ-7059-01 1 204198070 204198070 T C PLEKHA6 Missense_Mutation p.K916E 0.26 deleterious(0) possibly_damaging(0.867) TCGA-BQ-7059-01 1 216019211 216019211 G T USH2A Missense_Mutation p.H3004N 0.20 possibly_damaging(0.827) TCGA-BQ-7059-01 1 223984099 223984099 A G TP53BP2 Silent p.N714N 0.23 TCGA-BQ-7059-01 1 2340282 2340282 C G PEX10 Missense_Mutation p.G70A 0.22 deleterious(0) probably_damaging(1) TCGA-BQ-7059-01 1 36767245 36767245 G - THRAP3 Frame_Shift_Del p.E866Kfs*30 0.24 TCGA-BQ-7059-01 1 40148194 40148194 C T HPCAL4 3'UTR 0.35 TCGA-BQ-7059-01 1 7887456 7887456 G A PER3 Missense_Mutation p.A815T 0.25 tolerated(0.08) possibly_damaging(0.821) TCGA-BQ-7059-01 20 47691344 47691344 A G CSE1L Silent p.E363E 0.20 TCGA-BQ-7059-01 21 40582820 40582820 G T BRWD1 Missense_Mutation p.N1312K 0.18 tolerated(0.43) benign(0.002) TCGA-BQ-7059-01 22 36876727 36876727 T C TXN2 Missense_Mutation p.Y53C 0.20 tolerated(0.18) benign(0.006) TCGA-BQ-7059-01 2 131801882 131801882 G A ARHGEF4 Missense_Mutation p.R537H 0.45 deleterious(0.04) possibly_damaging(0.694) TCGA-BQ-7059-01 2 55844410 55844410 C T SMEK2 Silent p.T4T 0.16 TCGA-BQ-7059-01 2 74007101 74007101 T C DUSP11 Missense_Mutation p.M48V 0.30 deleterious(0) probably_damaging(0.991) TCGA-BQ-7059-01 2 85549813 85549813 A T TGOLN2 3'UTR 0.26 TCGA-BQ-7059-01 3 122414352 122414352 G A PARP14 Silent p.V226V 0.22 TCGA-BQ-7059-01 3 1371578 1371578 C G CNTN6 Missense_Mutation p.I441M 0.26 deleterious(0.02) possibly_damaging(0.857) TCGA-BQ-7059-01 3 149459267 149459267 T C COMMD2 3'UTR 0.16 TCGA-BQ-7059-01 3 53857341 53857341 A G CHDH Missense_Mutation p.I232T 0.25 tolerated(0.15) probably_damaging(0.911) TCGA-BQ-7059-01 3 87017993 87017993 C T VGLL3 Silent p.R228R 0.26 TCGA-BQ-7059-01 3 9800959 9800960 - T OGG1 Intron 0.20 TCGA-BQ-7059-01 4 104117130 104117130 G A CENPE Missense_Mutation p.H102Y 0.14 benign(0) TCGA-BQ-7059-01 4 149357285 149357285 T - NR3C2 Frame_Shift_Del p.N243Ifs*23 0.26 TCGA-BQ-7059-01 4 38798114 38798114 A T TLR1 Missense_Mutation p.L780Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-BQ-7059-01 4 42072612 42072612 T A SLC30A9 Missense_Mutation p.L441H 0.29 deleterious(0) probably_damaging(1) TCGA-BQ-7059-01 4 48076056 48076056 T A TXK Missense_Mutation p.D418V 0.17 deleterious(0) probably_damaging(0.999) TCGA-BQ-7059-01 4 85781624 85781624 G A WDFY3 Missense_Mutation p.H41Y 0.18 tolerated(0.49) possibly_damaging(0.579) TCGA-BQ-7059-01 5 131976367 131976367 T C RAD50 Silent p.L1208L 0.17 TCGA-BQ-7059-01 5 140802438 140802438 G C PCDHGA11 Silent p.S548S 0.17 TCGA-BQ-7059-01 5 179193559 179193560 - C MAML1 Frame_Shift_Ins p.L518Pfs*296 0.25 TCGA-BQ-7059-01 5 179318454 179318455 - A TBC1D9B Frame_Shift_Ins p.M323Ifs*34 0.20 TCGA-BQ-7059-01 5 54329766 54329766 T - GZMK 3'UTR 0.16 TCGA-BQ-7059-01 6 150690114 150690118 TGTTT CGTTTG IYD 5'UTR 0.18 TCGA-BQ-7059-01 6 25967011 25967011 G C TRIM38 Silent p.T87T 0.31 TCGA-BQ-7059-01 6 33644599 33644599 G A ITPR3 Missense_Mutation p.E1113K 0.26 deleterious(0) benign(0.206) TCGA-BQ-7059-01 6 83839062 83839062 C A DOPEY1 Missense_Mutation p.Q726K 0.20 tolerated(0.6) benign(0.005) TCGA-BQ-7059-01 6 83921594 83921594 G A ME1 3'UTR 0.20 TCGA-BQ-7059-01 7 116423407 116423407 G C MET Missense_Mutation p.D1246H 0.28 deleterious(0) probably_damaging(1) TCGA-BQ-7059-01 7 23163475 23163476 - T KLHL7 Frame_Shift_Ins p.N70* 0.29 TCGA-BQ-7059-01 7 44685022 44685022 G T OGDH Missense_Mutation p.V107L 0.22 tolerated(0.86) benign(0) TCGA-BQ-7059-01 8 39044454 39044454 A G ADAM32 Silent p.A314A 0.26 TCGA-BQ-7059-01 8 6335132 6335133 - A MCPH1 Frame_Shift_Ins p.M652Nfs*7 0.26 TCGA-BQ-7059-01 8 90936955 90936955 G C OSGIN2 Missense_Mutation p.R282T 0.33 tolerated(0.27) benign(0.028) TCGA-BQ-7059-01 9 124074584 124074584 G T GSN Intron 0.07 TCGA-BQ-7059-01 9 124089637 124089638 - C GSN Frame_Shift_Ins p.S600Lfs*88 0.18 TCGA-BQ-7059-01 9 130160364 130160364 T A SLC2A8 Missense_Mutation p.C134S 0.33 tolerated(0.73) benign(0.03) TCGA-BQ-7059-01 X 122770007 122770007 A G THOC2 Silent p.G647G 0.44 TCGA-BQ-7060-01 10 55581550 55581550 A G PCDH15 3'UTR 0.07 TCGA-BQ-7060-01 11 47597183 47597183 T - KBTBD4 Frame_Shift_Del p.R236Efs*12 0.23 TCGA-BQ-7060-01 11 57085299 57085299 G A TNKS1BP1 Missense_Mutation p.P264L 0.16 tolerated(0.07) benign(0.306) TCGA-BQ-7060-01 13 41905433 41905433 A T NAA16 Missense_Mutation p.I279F 0.32 tolerated(0.08) benign(0.021) TCGA-BQ-7060-01 14 20841196 20841196 C T TEP1 Missense_Mutation p.E2309K 0.39 tolerated(0.07) benign(0.01) TCGA-BQ-7060-01 14 74425838 74425838 G A ENTPD5 3'Flank 0.38 TCGA-BQ-7060-01 15 29561225 29561225 G C NDNL2 Missense_Mutation p.R229G 0.36 deleterious(0) probably_damaging(0.932) TCGA-BQ-7060-01 15 32928906 32928906 T G ARHGAP11A Missense_Mutation p.F644L 0.55 tolerated(0.83) benign(0.002) TCGA-BQ-7060-01 16 19490814 19490814 C G TMC5 Missense_Mutation p.S744C 0.29 tolerated(0.29) benign(0.208) TCGA-BQ-7060-01 16 31383749 31383749 G A ITGAX Silent p.T737T 0.51 TCGA-BQ-7060-01 16 67168085 67168085 T C C16orf70 Silent p.H155H 0.29 TCGA-BQ-7060-01 17 10267725 10267725 C T MYH13 Silent p.A41A 0.19 TCGA-BQ-7060-01 17 27182278 27182278 T C ERAL1 Missense_Mutation p.F76L 0.60 tolerated(0.81) benign(0.001) TCGA-BQ-7060-01 17 48190209 48190209 G T SAMD14 3'UTR 0.67 TCGA-BQ-7060-01 18 3499238 3499238 G T DLGAP1 Missense_Mutation p.T960N 0.23 deleterious(0) probably_damaging(0.999) TCGA-BQ-7060-01 19 10334519 10334519 C T S1PR2 3'Flank 0.42 TCGA-BQ-7060-01 19 42585518 42585518 A G ZNF574 3'UTR 0.39 TCGA-BQ-7060-01 19 5831656 5831656 A T FUT6 Missense_Mutation p.L308Q 0.42 deleterious(0) probably_damaging(1) TCGA-BQ-7060-01 19 9453288 9453293 AAAAGC GAAGG ZNF559 Frame_Shift_Del p.F390Lfs*17 0.38 TCGA-BQ-7060-01 1 120458888 120458888 A T NOTCH2 Missense_Mutation p.S2153T 0.32 deleterious(0.03) probably_damaging(0.991) TCGA-BQ-7060-01 1 144823878 144823878 A C NBPF9 Missense_Mutation p.Y381S 0.03 tolerated(0.61) unknown(0) TCGA-BQ-7060-01 1 20827614 20827614 G - MUL1 Frame_Shift_Del p.L210Cfs*12 0.27 TCGA-BQ-7060-01 1 22903099 22903099 G T EPHA8 Silent p.L183L 0.35 TCGA-BQ-7060-01 1 237061018 237061018 A T MTR 3'UTR 0.27 TCGA-BQ-7060-01 22 29445350 29445350 T C ZNRF3 Missense_Mutation p.V394A 0.27 tolerated(0.19) benign(0.23) TCGA-BQ-7060-01 3 121168266 121168266 T C POLQ Missense_Mutation p.Y2387C 0.49 deleterious(0) probably_damaging(1) TCGA-BQ-7060-01 3 160249255 160249255 A G KPNA4 Silent p.D126D 0.53 TCGA-BQ-7060-01 3 186006591 186006591 G A DGKG Missense_Mutation p.S151F 0.24 deleterious(0.01) benign(0.14) TCGA-BQ-7060-01 3 40529349 40529349 C T ZNF619 Missense_Mutation p.H490Y 0.54 deleterious(0) probably_damaging(0.986) TCGA-BQ-7060-01 3 52029445 52029445 G A RPL29 Silent p.N11N 0.24 TCGA-BQ-7060-01 4 151271258 151271259 - AT LRBA Frame_Shift_Ins p.G2429Lfs*20 0.16 TCGA-BQ-7060-01 4 88091355 88091355 C T KLHL8 Missense_Mutation p.M471I 0.07 tolerated(0.08) benign(0) TCGA-BQ-7060-01 5 176637880 176637880 T - NSD1 Frame_Shift_Del p.S828Lfs*9 0.22 TCGA-BQ-7060-01 6 76542650 76542650 A - MYO6 Frame_Shift_Del p.K162Nfs*4 0.28 TCGA-BQ-7060-01 7 116863027 116863027 A G ST7 Missense_Mutation p.Q584R 0.47 deleterious_low_confidence(0) benign(0.001) TCGA-BQ-7060-01 7 48081007 48081007 C A C7orf57 Silent p.L44L 0.46 TCGA-BQ-7060-01 8 99161148 99161148 G A POP1 Missense_Mutation p.V606M 0.37 tolerated(0.33) benign(0.094) TCGA-BQ-7060-01 9 113163288 113163288 A C SVEP1 Missense_Mutation p.L3223R 0.30 possibly_damaging(0.477) TCGA-BQ-7060-01 9 87486774 87486774 C G NTRK2 Intron 0.35 TCGA-BQ-7060-01 X 18195783 18195783 A T BEND2 Silent p.I512I 0.72 TCGA-BQ-7060-01 X 44733231 44733231 A T KDM6A Nonsense_Mutation p.K75* 0.70 TCGA-BQ-7061-01 10 101569944 101569944 C T ABCC2 Silent p.D623D 0.38 TCGA-BQ-7061-01 10 104112265 104112265 C G GBF1 Missense_Mutation p.L192V 0.36 deleterious(0.05) possibly_damaging(0.742) TCGA-BQ-7061-01 10 105350181 105350181 T C NEURL1 3'UTR 0.36 TCGA-BQ-7061-01 10 27349330 27349331 - TCA ANKRD26 In_Frame_Ins p.M502dup 0.35 TCGA-BQ-7061-01 10 8092891 8092891 G A GATA3 5'Flank 0.33 TCGA-BQ-7061-01 11 102567479 102567479 G A MMP27 Missense_Mutation p.P236L 0.10 deleterious(0) probably_damaging(1) TCGA-BQ-7061-01 11 111225200 111225200 A G POU2AF1 Missense_Mutation p.L186P 0.36 deleterious(0) probably_damaging(1) TCGA-BQ-7061-01 11 134038822 134038822 G - NCAPD3 Frame_Shift_Del p.Q1077Sfs*11 0.36 TCGA-BQ-7061-01 11 88242044 88242044 G A GRM5 Missense_Mutation p.P1119S 0.28 tolerated_low_confidence(0.31) benign(0.01) TCGA-BQ-7061-01 12 107154995 107154995 T A RFX4 Silent p.T661T 0.54 TCGA-BQ-7061-01 12 11061866 11061866 A C TAS2R13 Missense_Mutation p.L11R 0.58 deleterious(0.01) possibly_damaging(0.811) TCGA-BQ-7061-01 12 117655909 117655909 T C NOS1 Missense_Mutation p.N1445D 0.22 tolerated(0.08) possibly_damaging(0.493) TCGA-BQ-7061-01 12 130919339 130919339 G A RIMBP2 Silent p.D714D 0.15 TCGA-BQ-7061-01 12 346409 346409 A T SLC6A13 Missense_Mutation p.L204Q 0.24 deleterious(0) probably_damaging(0.98) TCGA-BQ-7061-01 12 64041138 64041138 A T DPY19L2 Missense_Mutation p.I199K 0.21 deleterious(0) possibly_damaging(0.811) TCGA-BQ-7061-01 12 7046365 7046365 C G ATN1 Silent p.S645S 0.56 TCGA-BQ-7061-01 13 20356943 20356943 G C PSPC1 5'UTR 0.04 TCGA-BQ-7061-01 13 45010862 45010862 A G TSC22D1 Intron 0.35 TCGA-BQ-7061-01 14 107198935 107198935 A C IGHV3-72 Silent p.A118A 0.39 TCGA-BQ-7061-01 14 20869208 20869208 G A TEP1 Missense_Mutation p.P495L 0.32 deleterious(0) probably_damaging(1) TCGA-BQ-7061-01 15 28447597 28447597 A G HERC2 Missense_Mutation p.L2459P 0.16 benign(0) TCGA-BQ-7061-01 15 42041819 42041837 CTAATGTAATAAAACAAAA - MGA Frame_Shift_Del p.N2006Qfs*10 0.30 TCGA-BQ-7061-01 15 43749140 43749140 T A TP53BP1 Missense_Mutation p.M556L 0.40 tolerated(1) benign(0.001) TCGA-BQ-7061-01 15 59501015 59501015 G A MYO1E Silent p.D465D 0.18 TCGA-BQ-7061-01 15 63011987 63011987 C G TLN2 Missense_Mutation p.Q967E 0.36 tolerated(0.58) benign(0.01) TCGA-BQ-7061-01 15 79264261 79264261 G A RASGRF1 Nonsense_Mutation p.R1226* 0.34 TCGA-BQ-7061-01 16 15841744 15841744 G T MYH11 Missense_Mutation p.A753D 0.33 possibly_damaging(0.713) TCGA-BQ-7061-01 16 18812838 18812838 C T ARL6IP1 5'UTR 0.46 TCGA-BQ-7061-01 16 19711796 19711797 - G C16orf62 Frame_Shift_Ins p.*1053W 0.22 TCGA-BQ-7061-01 16 21215430 21215430 T A ZP2 Missense_Mutation p.Q298L 0.41 deleterious(0.02) benign(0.178) TCGA-BQ-7061-01 16 4849743 4849743 G C ROGDI Missense_Mutation p.L126V 0.18 tolerated(0.2) possibly_damaging(0.869) TCGA-BQ-7061-01 16 86601010 86601010 T G FOXC2 Missense_Mutation p.N23K 0.39 deleterious(0.01) benign(0.197) TCGA-BQ-7061-01 17 16701681 16701681 C A CCDC144A 3'UTR 0.13 TCGA-BQ-7061-01 17 2232753 2232753 A T TSR1 Missense_Mutation p.M596K 0.33 deleterious(0.01) benign(0.101) TCGA-BQ-7061-01 17 57697411 57697423 TCCTCCTCTCCCT - CLTC 5'UTR 0.35 TCGA-BQ-7061-01 17 6375990 6375990 C T PITPNM3 Silent p.Q472Q 0.52 TCGA-BQ-7061-01 17 74570497 74570497 C T ST6GALNAC2 Missense_Mutation p.R104H 0.38 benign(0.015) TCGA-BQ-7061-01 17 76455187 76455187 C T DNAH17 Missense_Mutation p.E3239K 0.20 benign(0.012) TCGA-BQ-7061-01 19 12639496 12639497 AG - ZNF564 Frame_Shift_Del p.S6* 0.32 TCGA-BQ-7061-01 19 13226494 13226494 T A TRMT1 Missense_Mutation p.E133D 0.36 tolerated(0.31) benign(0.008) TCGA-BQ-7061-01 19 16964967 16964967 T C SIN3B Missense_Mutation p.L318P 0.43 deleterious(0) probably_damaging(0.992) TCGA-BQ-7061-01 19 35757260 35757260 A G LSR Splice_Site p.X308_splice 0.27 TCGA-BQ-7061-01 19 58187881 58187881 C G ZSCAN4 Missense_Mutation p.T123S 0.37 tolerated(0.37) benign(0.084) TCGA-BQ-7061-01 19 5824062 5824062 A G NRTN 5'UTR 0.22 TCGA-BQ-7061-01 1 11307790 11307790 C A MTOR Missense_Mutation p.V373L 0.21 deleterious(0.04) benign(0.034) TCGA-BQ-7061-01 1 152671691 152671691 G C LCE2A Missense_Mutation p.C105S 0.22 deleterious_low_confidence(0) unknown(0) TCGA-BQ-7061-01 1 182850707 182850707 A G DHX9 Missense_Mutation p.M947V 0.71 tolerated(0.31) benign(0.01) TCGA-BQ-7061-01 1 197073973 197073974 - A ASPM Frame_Shift_Ins p.I1470Yfs*7 0.45 TCGA-BQ-7061-01 1 31819623 31819623 C G ZCCHC17 Intron 0.68 TCGA-BQ-7061-01 1 35476600 35476600 G A ZMYM6 Missense_Mutation p.A367V 0.41 tolerated(0.4) benign(0.005) TCGA-BQ-7061-01 1 92712096 92712096 C G GLMN Silent p.G592G 0.09 TCGA-BQ-7061-01 20 25198149 25198149 G C ENTPD6 Missense_Mutation p.Q270H 0.25 deleterious(0.01) benign(0.072) TCGA-BQ-7061-01 22 21384544 21384544 A T SLC7A4 Missense_Mutation p.V360E 0.11 deleterious(0) possibly_damaging(0.883) TCGA-BQ-7061-01 22 26086189 26086189 G A ADRBK2 Missense_Mutation p.A331T 0.18 deleterious(0.03) benign(0.027) TCGA-BQ-7061-01 2 143986166 143986166 T C ARHGAP15 Missense_Mutation p.S105P 0.26 deleterious(0.01) possibly_damaging(0.46) TCGA-BQ-7061-01 2 168103542 168103542 T A XIRP2 Missense_Mutation p.H1880Q 0.25 benign(0.005) TCGA-BQ-7061-01 2 220309733 220309733 C G SPEG Missense_Mutation p.P222R 0.37 benign(0.075) TCGA-BQ-7061-01 2 224824513 224824513 A G MRPL44 Missense_Mutation p.M148V 0.44 deleterious(0.04) benign(0.004) TCGA-BQ-7061-01 2 27317347 27317347 T A KHK Missense_Mutation p.F71Y 0.29 deleterious(0.05) possibly_damaging(0.73) TCGA-BQ-7061-01 2 3502643 3502643 C A ADI1 3'UTR 0.51 TCGA-BQ-7061-01 2 61450209 61450209 G C USP34 Missense_Mutation p.R2579G 0.24 tolerated(0.08) possibly_damaging(0.737) TCGA-BQ-7061-01 2 75921529 75921529 G C GCFC2 Missense_Mutation p.H286Q 0.39 deleterious(0.03) probably_damaging(0.914) TCGA-BQ-7061-01 2 99411105 99411105 G C KIAA1211L Missense_Mutation p.L927V 0.41 deleterious(0.03) benign(0.425) TCGA-BQ-7061-01 3 113377559 113377559 T C KIAA2018 Silent p.S990S 0.77 TCGA-BQ-7061-01 3 121822644 121822644 C G CD86 Missense_Mutation p.P117R 0.85 deleterious(0.04) benign(0.34) TCGA-BQ-7061-01 3 127783691 127783691 T C SEC61A1 Intron 0.82 TCGA-BQ-7061-01 3 37365472 37365472 G A GOLGA4 Missense_Mutation p.A721T 0.76 benign(0.012) TCGA-BQ-7061-01 3 47164114 47164114 A - SETD2 Frame_Shift_Del p.L671* 0.46 TCGA-BQ-7061-01 3 52023049 52023049 G C ACY1 Silent p.L395L 0.78 TCGA-BQ-7061-01 3 52651555 52651555 C T PBRM1 Splice_Site p.X514_splice 0.69 TCGA-BQ-7061-01 4 146475084 146475084 T G SMAD1 Missense_Mutation p.I382M 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-BQ-7061-01 4 185339324 185339324 G C IRF2 Missense_Mutation p.I136M 0.35 tolerated(0.14) benign(0.141) TCGA-BQ-7061-01 4 187525694 187525694 A G FAT1 Missense_Mutation p.L3462P 0.36 probably_damaging(1) TCGA-BQ-7061-01 5 36039694 36039694 A C UGT3A2 Missense_Mutation p.F320L 0.37 tolerated(0.23) probably_damaging(0.941) TCGA-BQ-7061-01 5 7766912 7766912 T G ADCY2 Missense_Mutation p.F736C 0.34 tolerated(0.21) benign(0.001) TCGA-BQ-7061-01 6 117706858 117706858 T A ROS1 Silent p.G764G 0.45 TCGA-BQ-7061-01 6 136512787 136512788 - A PDE7B Frame_Shift_Ins p.W389Mfs*7 0.25 TCGA-BQ-7061-01 6 149721831 149721831 C T SUMO4 3'UTR 0.39 TCGA-BQ-7061-01 6 150240371 150240371 T C RAET1G Missense_Mutation p.I147V 0.44 tolerated(1) benign(0.003) TCGA-BQ-7061-01 6 34730469 34730469 T C SNRPC Missense_Mutation p.I50T 0.25 tolerated(0.06) benign(0.186) TCGA-BQ-7061-01 6 35392132 35392132 A C PPARD Silent p.T218T 0.36 TCGA-BQ-7061-01 6 44254102 44254102 C T TCTE1 Missense_Mutation p.G149S 0.22 tolerated(0.1) benign(0.14) TCGA-BQ-7061-01 6 46660547 46660547 G C TDRD6 Missense_Mutation p.R1561T 0.41 tolerated(0.4) benign(0.044) TCGA-BQ-7061-01 6 82461531 82461531 C T FAM46A Missense_Mutation p.E110K 0.47 tolerated(0.19) benign(0.055) TCGA-BQ-7061-01 6 88855053 88855053 A T CNR1 5'UTR 0.41 TCGA-BQ-7061-01 7 103029511 103029511 A G SLC26A5 Silent p.Y486Y 0.21 TCGA-BQ-7061-01 7 103824559 103824571 TTACACAGTTACC - ORC5 Splice_Site p.X245_splice 0.38 TCGA-BQ-7061-01 7 138602963 138602963 T C KIAA1549 Missense_Mutation p.D470G 0.30 tolerated(0.06) benign(0.036) TCGA-BQ-7061-01 7 138982613 138982613 T G UBN2 3'UTR 0.32 TCGA-BQ-7061-01 7 150493608 150493608 G C TMEM176B Missense_Mutation p.P17R 0.05 tolerated(0.52) benign(0.001) TCGA-BQ-7061-01 7 79842142 79842142 A G GNAI1 Silent p.K277K 0.28 TCGA-BQ-7061-01 7 92734539 92734539 T G SAMD9 Missense_Mutation p.E291A 0.53 deleterious(0) possibly_damaging(0.662) TCGA-BQ-7061-01 8 145637843 145637843 A G SLC39A4 3'UTR 0.31 TCGA-BQ-7061-01 8 77617295 77617295 G T ZFHX4 Silent p.G324G 0.39 TCGA-BQ-7061-01 8 77617296 77617296 A T ZFHX4 Missense_Mutation p.I325F 0.39 benign(0.402) TCGA-BQ-7061-01 X 144904633 144904633 G C SLITRK2 Missense_Mutation p.W230C 0.19 deleterious(0) probably_damaging(0.999) TCGA-BQ-7061-01 X 144904634 144904634 C T SLITRK2 Silent p.L231L 0.20 TCGA-BQ-7061-01 X 144904635 144904635 T A SLITRK2 Missense_Mutation p.L231Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-BQ-7061-01 X 153496172 153496172 C A OPN1MW2 Missense_Mutation p.H300Q 0.68 tolerated(0.28) benign(0.162) TCGA-BQ-7061-01 X 51486959 51486959 G T GSPT2 Silent p.P79P 0.29 TCGA-BQ-7061-01 X 51486960 51486960 C T GSPT2 Missense_Mutation p.P80S 0.29 tolerated(0.24) benign(0.003) TCGA-BQ-7061-01 X 54099400 54099400 G T FAM120C 3'UTR 0.51 TCGA-BQ-7061-01 X 64749564 64749564 C A LAS1L Nonsense_Mutation p.E237* 0.33 TCGA-BQ-7061-01 X 69637856 69637856 T C KIF4A Splice_Site p.X1124_splice 0.35 TCGA-BQ-7062-01 10 103347208 103347208 T C POLL Intron 0.38 TCGA-BQ-7062-01 10 124352013 124352013 G A DMBT1 Missense_Mutation p.R801H 0.07 tolerated(0.35) unknown(0) TCGA-BQ-7062-01 10 91177427 91177427 A G IFIT5 Silent p.Q157Q 0.24 TCGA-BQ-7062-01 11 47726183 47726183 G - AGBL2 Frame_Shift_Del p.S168Pfs*51 0.19 TCGA-BQ-7062-01 11 62489600 62489600 C A HNRNPUL2 Nonsense_Mutation p.E450* 0.26 TCGA-BQ-7062-01 12 103234258 103234258 A G PAH Missense_Mutation p.V412A 0.44 deleterious(0.02) possibly_damaging(0.83) TCGA-BQ-7062-01 12 123187395 123187395 T A HCAR2 Missense_Mutation p.I146F 0.20 tolerated(0.72) benign(0.027) TCGA-BQ-7062-01 12 4657343 4657343 A T RAD51AP1 Missense_Mutation p.L152F 0.41 tolerated(0.08) probably_damaging(0.975) TCGA-BQ-7062-01 12 49500795 49500795 G T LMBR1L Missense_Mutation p.L36I 0.45 tolerated(0.7) benign(0.135) TCGA-BQ-7062-01 12 50295155 50295155 C T FAIM2 Intron 0.21 TCGA-BQ-7062-01 12 50295156 50295156 C T FAIM2 Intron 0.21 TCGA-BQ-7062-01 13 20356928 20356928 A T PSPC1 5'UTR 0.24 TCGA-BQ-7062-01 15 78885562 78885562 A C CHRNA5 Missense_Mutation p.L458F 0.23 deleterious_low_confidence(0.01) benign(0.032) TCGA-BQ-7062-01 16 20787239 20787239 C T ACSM3 Silent p.L100L 0.19 TCGA-BQ-7062-01 16 4029168 4029168 G A ADCY9 Silent p.P876P 0.19 TCGA-BQ-7062-01 17 1631524 1631524 G A WDR81 Missense_Mutation p.V1091M 0.16 deleterious(0.03) probably_damaging(0.983) TCGA-BQ-7062-01 17 34871758 34871758 T C MYO19 Missense_Mutation p.I164V 0.16 tolerated(0.76) benign(0.009) TCGA-BQ-7062-01 17 4848277 4848277 T C RNF167 Missense_Mutation p.L340P 0.22 tolerated_low_confidence(0.09) unknown(0) TCGA-BQ-7062-01 17 54926211 54926211 A G DGKE Missense_Mutation p.D348G 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-BQ-7062-01 18 72344119 72344120 - TA ZNF407 Frame_Shift_Ins p.D383* 0.23 TCGA-BQ-7062-01 19 4328673 4328673 C G STAP2 Missense_Mutation p.G197R 0.43 tolerated(0.06) benign(0.058) TCGA-BQ-7062-01 19 6312191 6312191 A G ACER1 Missense_Mutation p.C107R 0.10 tolerated(0.65) benign(0.05) TCGA-BQ-7062-01 1 1686870 1686870 A T NADK Missense_Mutation p.F356I 0.17 deleterious(0) probably_damaging(0.997) TCGA-BQ-7062-01 1 173839638 173839638 T C ZBTB37 Missense_Mutation p.I92T 0.25 deleterious(0) possibly_damaging(0.596) TCGA-BQ-7062-01 1 204923960 204923960 C A NFASC Missense_Mutation p.S139Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-BQ-7062-01 1 24021204 24021204 T G RPL11 Missense_Mutation p.F107V 0.33 deleterious(0) probably_damaging(0.975) TCGA-BQ-7062-01 1 240371517 240371517 T A FMN2 Silent p.L1135L 0.36 TCGA-BQ-7062-01 1 87805263 87805263 T - LMO4 Frame_Shift_Del p.P95Lfs*7 0.24 TCGA-BQ-7062-01 20 37536822 37536822 G T PPP1R16B Nonsense_Mutation p.E394* 0.15 TCGA-BQ-7062-01 20 37536828 37536828 A G PPP1R16B Missense_Mutation p.K396E 0.14 tolerated(0.63) benign(0.11) TCGA-BQ-7062-01 20 43264929 43264929 C T ADA Missense_Mutation p.V12M 0.21 deleterious(0) probably_damaging(0.996) TCGA-BQ-7062-01 22 21304307 21304307 T C CRKL 3'UTR 0.29 TCGA-BQ-7062-01 22 36623446 36623446 G C APOL2 3'UTR 0.21 TCGA-BQ-7062-01 22 38313744 38313744 C T MICALL1 Missense_Mutation p.A123V 0.24 deleterious(0.02) benign(0.004) TCGA-BQ-7062-01 2 233322816 233322816 C T ALPI Missense_Mutation p.P322L 0.24 deleterious(0) possibly_damaging(0.696) TCGA-BQ-7062-01 3 100074152 100074152 A G NIT2 3'UTR 0.18 TCGA-BQ-7062-01 3 186383957 186383957 A T HRG Missense_Mutation p.Y46F 0.40 tolerated(0.09) benign(0.418) TCGA-BQ-7062-01 3 47455522 47455522 C A SCAP Missense_Mutation p.C1221F 0.41 deleterious(0) probably_damaging(0.99) TCGA-BQ-7062-01 3 48459373 48459373 C A PLXNB1 Silent p.T1107T 0.22 TCGA-BQ-7062-01 3 49059877 49059877 A T NDUFAF3 Missense_Mutation p.Y59F 0.21 tolerated(0.56) benign(0.003) TCGA-BQ-7062-01 3 52432935 52432935 A G DNAH1 Silent p.V4053V 0.20 TCGA-BQ-7062-01 5 121187826 121187826 G T FTMT Silent p.R56R 0.30 TCGA-BQ-7062-01 5 149515196 149515213 CCGTGTCTAGCCCAGTGA - PDGFRB In_Frame_Del p.L90_G96delinsR 0.28 TCGA-BQ-7062-01 6 101296249 101296249 T A ASCC3 Silent p.I192I 0.23 TCGA-BQ-7062-01 6 11723579 11723579 G T ADTRP Intron 0.24 TCGA-BQ-7062-01 7 156752614 156752614 A - NOM1 Frame_Shift_Del p.E461Sfs*27 0.23 TCGA-BQ-7062-01 8 143762846 143762846 C G PSCA Missense_Mutation p.R43G 0.33 tolerated(0.11) probably_damaging(0.945) TCGA-BQ-7062-01 8 33369560 33369560 A T TTI2 Missense_Mutation p.F191Y 0.25 deleterious(0) probably_damaging(0.988) TCGA-BQ-7062-01 8 73921183 73921183 C T TERF1 Missense_Mutation p.A21V 0.19 deleterious_low_confidence(0.03) benign(0.091) TCGA-BQ-7062-01 9 35698169 35698169 C G TLN1 Missense_Mutation p.A2458P 0.16 tolerated(0.05) benign(0.354) TCGA-BQ-7062-01 X 106201626 106201626 A G MORC4 Missense_Mutation p.I442T 0.54 tolerated(0.15) benign(0.023) TCGA-DW-5560-01 10 70706453 70706453 A - DDX50 3'UTR 0.48 TCGA-DW-5560-01 11 208890 208890 G T RIC8A Silent p.T12T 0.21 TCGA-DW-5560-01 11 428825 428825 T C ANO9 Missense_Mutation p.E306G 0.45 deleterious(0) possibly_damaging(0.887) TCGA-DW-5560-01 11 5566652 5566652 C - OR52H1 Frame_Shift_Del p.W34* 0.34 TCGA-DW-5560-01 11 65273039 65273039 C T MALAT1 RNA 0.43 TCGA-DW-5560-01 11 66113458 66113458 A G B3GNT1 3'UTR 0.44 TCGA-DW-5560-01 11 67430584 67430584 G A ALDH3B2 3'UTR 0.39 TCGA-DW-5560-01 11 68318632 68318637 TTCATC GT PPP6R3 Frame_Shift_Del p.V199Gfs*22 0.14 TCGA-DW-5560-01 12 112843158 112843158 C T RPL6 Missense_Mutation p.R246H 0.29 tolerated(0.15) benign(0.022) TCGA-DW-5560-01 12 123801801 123801802 - T SBNO1 Frame_Shift_Ins p.P968Tfs*5 0.29 TCGA-DW-5560-01 14 105174895 105174896 - C INF2 Frame_Shift_Ins p.R622Pfs*28 0.40 TCGA-DW-5560-01 15 51783908 51783908 G A DMXL2 Missense_Mutation p.S1607F 0.41 deleterious(0) probably_damaging(0.999) TCGA-DW-5560-01 15 64448203 64448203 A T PPIB 3'UTR 0.29 TCGA-DW-5560-01 15 93567925 93567925 G A CHD2 Missense_Mutation p.R1826Q 0.07 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-DW-5560-01 16 67315014 67315014 G C PLEKHG4 Missense_Mutation p.G247A 0.55 deleterious(0.01) probably_damaging(0.998) TCGA-DW-5560-01 16 71789972 71789972 C T AP1G1 Silent p.E396E 0.43 TCGA-DW-5560-01 17 34340315 34340315 G A CCL23 Silent p.A112A 0.05 TCGA-DW-5560-01 17 37627488 37627488 T A CDK12 Missense_Mutation p.L468Q 0.27 benign(0.202) TCGA-DW-5560-01 17 57754485 57754485 A G CLTC Missense_Mutation p.K911R 0.65 tolerated(0.08) probably_damaging(0.999) TCGA-DW-5560-01 17 66267173 66267173 A G SLC16A6 Silent p.F376F 0.65 TCGA-DW-5560-01 17 7219426 7219426 A G NEURL4 3'UTR 0.56 TCGA-DW-5560-01 1 100214268 100214268 A G FRRS1 Silent p.Y19Y 0.37 TCGA-DW-5560-01 1 10177626 10177626 C A UBE4B Silent p.R436R 0.09 TCGA-DW-5560-01 1 110604111 110604111 G T ALX3 Silent p.P223P 0.34 TCGA-DW-5560-01 1 60133071 60133091 TACTGGTAAGTCTGGGAAAGA - FGGY Splice_Site p.X495_splice 0.35 TCGA-DW-5560-01 20 46252817 46252817 A - NCOA3 Frame_Shift_Del p.E84Sfs*30 0.20 TCGA-DW-5560-01 20 62340218 62340218 G A ZGPAT Missense_Mutation p.A96T 0.62 tolerated(0.49) benign(0.001) TCGA-DW-5560-01 22 32889131 32889131 C A FBXO7 Missense_Mutation p.P336Q 0.41 deleterious(0) probably_damaging(0.996) TCGA-DW-5560-01 22 50218005 50218005 A G BRD1 5'UTR 0.49 TCGA-DW-5560-01 2 127828371 127828371 T C BIN1 Missense_Mutation p.K63E 0.45 deleterious(0) possibly_damaging(0.794) TCGA-DW-5560-01 2 130738210 130738210 G A RAB6C Silent p.L174L 0.35 TCGA-DW-5560-01 2 152512859 152512859 C T NEB Silent p.E2101E 0.41 TCGA-DW-5560-01 2 179433843 179433843 G C TTN Nonsense_Mutation p.Y25672* 0.43 TCGA-DW-5560-01 3 42636041 42636041 G A SS18L2 3'UTR 0.61 TCGA-DW-5560-01 3 50005960 50005960 G T RBM6 Missense_Mutation p.D368Y 0.44 deleterious(0.01) possibly_damaging(0.823) TCGA-DW-5560-01 4 152592364 152592364 T C PET112 Missense_Mutation p.M546V 0.47 tolerated(0.44) benign(0) TCGA-DW-5560-01 5 176831341 176831341 G A F12 Silent p.L292L 0.42 TCGA-DW-5560-01 6 144416675 144416675 G A SF3B5 5'UTR 0.39 TCGA-DW-5560-01 6 42584954 42584954 G A UBR2 Intron 0.45 TCGA-DW-5560-01 7 142334804 142334804 G A TRBV20-1 Missense_Mutation p.V76I 0.33 deleterious(0) benign(0.06) TCGA-DW-5560-01 8 133823424 133823424 A T PHF20L1 Intron 0.58 TCGA-DW-5560-01 9 139757816 139757816 C A EDF1 Missense_Mutation p.R72M 0.40 deleterious(0) possibly_damaging(0.738) TCGA-DW-5561-01 10 104211148 104211149 - C C10orf95 Frame_Shift_Ins p.D27Rfs*11 0.40 TCGA-DW-5561-01 11 128360461 128360461 A T ETS1 Nonsense_Mutation p.C75* 0.35 TCGA-DW-5561-01 11 14280994 14280994 G A RP11-21L19.1 3'Flank 0.20 TCGA-DW-5561-01 11 55110797 55110797 C T OR4A16 Missense_Mutation p.L41F 0.35 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-DW-5561-01 12 11150353 11150353 A T TAS2R20 Missense_Mutation p.I41N 0.63 deleterious(0) probably_damaging(0.992) TCGA-DW-5561-01 12 335609 335609 A G SLC6A13 Missense_Mutation p.L336P 0.60 deleterious(0) probably_damaging(0.983) TCGA-DW-5561-01 12 4383160 4383160 T C CCND2 5'UTR 0.53 TCGA-DW-5561-01 12 6646478 6646485 TGCCTCCT - GAPDH Frame_Shift_Del p.N149Kfs*15 0.42 TCGA-DW-5561-01 12 72288466 72288466 A T TBC1D15 Nonsense_Mutation p.K237* 0.53 TCGA-DW-5561-01 12 89918277 89918277 A C GALNT4 Missense_Mutation p.F17C 0.41 tolerated_low_confidence(0.22) benign(0) TCGA-DW-5561-01 13 25285672 25285672 T C ATP12A 3'UTR 0.26 TCGA-DW-5561-01 13 30091728 30091728 T C SLC7A1 Missense_Mutation p.I498V 0.28 tolerated(1) benign(0.001) TCGA-DW-5561-01 14 20404312 20404313 AC - OR4K1 Frame_Shift_Del p.T163Sfs*10 0.35 TCGA-DW-5561-01 15 35044907 35044907 C T GJD2 Silent p.R246R 0.06 TCGA-DW-5561-01 15 64702017 64702017 T C TRIP4 Missense_Mutation p.Y345H 0.32 deleterious(0) probably_damaging(0.999) TCGA-DW-5561-01 16 4165346 4165346 T G ADCY9 Missense_Mutation p.N33T 0.44 tolerated_low_confidence(0.14) benign(0.007) TCGA-DW-5561-01 17 27002076 27002076 T C SUPT6H Missense_Mutation p.I145T 0.32 deleterious(0) unknown(0) TCGA-DW-5561-01 18 55217906 55217906 G - FECH 3'UTR 0.36 TCGA-DW-5561-01 19 14677078 14677078 C A NDUFB7 Splice_Site p.X94_splice 0.41 TCGA-DW-5561-01 19 19452209 19452209 C T MAU2 Missense_Mutation p.A243V 0.06 tolerated(0.25) benign(0.214) TCGA-DW-5561-01 19 23927477 23927484 TTAAAGGC - ZNF681 Frame_Shift_Del p.A290Sfs*9 0.38 TCGA-DW-5561-01 19 54711238 54711238 G T RPS9 Intron 0.32 TCGA-DW-5561-01 1 11346095 11346095 G C UBIAD1 Silent p.L308L 0.38 TCGA-DW-5561-01 1 156213043 156213044 - CCCCC PMF1-BGLAP 3'UTR 0.45 TCGA-DW-5561-01 1 17609568 17609568 G A PADI3 Silent p.V663V 0.20 TCGA-DW-5561-01 1 205052751 205052751 G T TMEM81 Missense_Mutation p.A233D 0.31 deleterious(0.01) possibly_damaging(0.82) TCGA-DW-5561-01 1 205064022 205064022 C T RBBP5 Missense_Mutation p.E523K 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.636) TCGA-DW-5561-01 1 207642031 207642031 A C CR2 Missense_Mutation p.K202T 0.44 tolerated(0.48) benign(0.007) TCGA-DW-5561-01 1 27176925 27176925 G A ZDHHC18 Silent p.T260T 0.42 TCGA-DW-5561-01 1 33237745 33237745 C A KIAA1522 Missense_Mutation p.P989T 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-DW-5561-01 1 39835802 39835802 C G MACF1 Missense_Mutation p.P2285A 0.55 benign(0.006) TCGA-DW-5561-01 20 42087023 42087023 G A SRSF6 Missense_Mutation p.D44N 0.50 tolerated(0.09) probably_damaging(0.982) TCGA-DW-5561-01 22 30891293 30891293 C T SEC14L4 Missense_Mutation p.R124H 0.40 deleterious(0) possibly_damaging(0.87) TCGA-DW-5561-01 22 32352660 32352660 C T YWHAH Silent p.L208L 0.55 TCGA-DW-5561-01 2 120197613 120197613 G T SCTR 3'UTR 0.30 TCGA-DW-5561-01 2 220338577 220338577 C A SPEG Silent p.R1467R 0.56 TCGA-DW-5561-01 2 69664479 69664479 G C NFU1 Intron 0.37 TCGA-DW-5561-01 2 74328030 74328030 C A TET3 Missense_Mutation p.A1237D 0.30 tolerated_low_confidence(0.09) benign(0.197) TCGA-DW-5561-01 3 11356947 11356947 T A ATG7 Missense_Mutation p.F220I 0.39 deleterious(0.01) benign(0.04) TCGA-DW-5561-01 3 193132518 193132518 G C ATP13A4 Missense_Mutation p.P955R 0.33 deleterious(0.03) possibly_damaging(0.894) TCGA-DW-5561-01 3 195395509 195395509 A G SDHAP2 RNA 0.16 TCGA-DW-5561-01 4 111397845 111397845 G A ENPEP Missense_Mutation p.R92Q 0.39 deleterious(0) probably_damaging(0.964) TCGA-DW-5561-01 4 25396298 25396298 A G ANAPC4 Missense_Mutation p.E316G 0.42 deleterious(0.01) probably_damaging(0.967) TCGA-DW-5561-01 4 75937687 75937687 G C PARM1 Silent p.P32P 0.47 TCGA-DW-5561-01 4 8021392 8021392 C T ABLIM2 Missense_Mutation p.G459D 0.06 deleterious(0.01) possibly_damaging(0.732) TCGA-DW-5561-01 5 10288604 10288609 AAGGCT - CMBL In_Frame_Del p.E83_W85delinsG 0.36 TCGA-DW-5561-01 5 149827271 149827271 T C RPS14 Missense_Mutation p.K9R 0.46 tolerated(0.1) benign(0.008) TCGA-DW-5561-01 5 173317605 173317605 G - CPEB4 Frame_Shift_Del p.S290Ifs*32 0.35 TCGA-DW-5561-01 5 7820695 7820695 G A ADCY2 Missense_Mutation p.V1006M 0.52 deleterious(0) probably_damaging(1) TCGA-DW-5561-01 6 4047415 4047415 C G PRPF4B Missense_Mutation p.S623C 0.32 deleterious(0.01) unknown(0) TCGA-DW-5561-01 7 119915491 119915491 G T KCND2 Missense_Mutation p.A269S 0.26 tolerated(0.16) probably_damaging(1) TCGA-DW-5561-01 7 73008336 73008336 G C MLXIPL Intron 0.38 TCGA-DW-5561-01 8 20107210 20107210 G T LZTS1 3'UTR 0.35 TCGA-DW-5561-01 9 107531256 107531256 T A NIPSNAP3B Silent p.I128I 0.51 TCGA-DW-5561-01 9 22006244 22006244 G A CDKN2B Silent p.V53V 0.35 TCGA-DW-5561-01 X 54319393 54319393 A T WNK3 Missense_Mutation p.H655Q 0.74 tolerated(0.25) benign(0.003) TCGA-DW-7834-01 10 104404881 104404881 C T TRIM8 Silent p.Y169Y 0.20 TCGA-DW-7834-01 10 55570392 55570392 C T PCDH15 Missense_Mutation p.R1476Q 0.28 possibly_damaging(0.575) TCGA-DW-7834-01 10 91498338 91498338 A C KIF20B Missense_Mutation p.E1207A 0.37 deleterious(0) probably_damaging(0.917) TCGA-DW-7834-01 11 117860196 117860196 C A IL10RA Missense_Mutation p.S76R 0.36 tolerated(0.13) benign(0.049) TCGA-DW-7834-01 11 48149503 48149503 C T PTPRJ Missense_Mutation p.P422L 0.34 tolerated(0.13) benign(0.001) TCGA-DW-7834-01 11 64822081 64822081 C T NAALADL1 Missense_Mutation p.E245K 0.25 deleterious(0) possibly_damaging(0.826) TCGA-DW-7834-01 12 49743366 49743366 T C DNAJC22 Silent p.L237L 0.31 TCGA-DW-7834-01 12 9356427 9356427 T A PZP Missense_Mutation p.E68D 0.33 tolerated(0.42) benign(0.01) TCGA-DW-7834-01 12 99548286 99548286 G C ANKS1B Intron 0.26 TCGA-DW-7834-01 13 99908051 99908051 G C GPR18 Missense_Mutation p.L26V 0.21 tolerated(0.12) possibly_damaging(0.504) TCGA-DW-7834-01 14 23607203 23607203 C T SLC7A8 Missense_Mutation p.A315T 0.23 deleterious(0.02) benign(0.43) TCGA-DW-7834-01 14 65032084 65032084 T A PPP1R36 Missense_Mutation p.D93E 0.31 tolerated(0.86) benign(0.019) TCGA-DW-7834-01 14 67848335 67848335 T C EIF2S1 Silent p.Y202Y 0.36 TCGA-DW-7834-01 15 74888137 74888137 C A ARID3B 3'UTR 0.28 TCGA-DW-7834-01 16 1836594 1836594 G C NUBP2 Missense_Mutation p.G25R 0.19 deleterious(0) probably_damaging(1) TCGA-DW-7834-01 16 27720066 27720066 T C KIAA0556 Missense_Mutation p.I477T 0.19 deleterious(0.03) benign(0.059) TCGA-DW-7834-01 16 57917898 57917898 G T CNGB1 3'UTR 0.78 TCGA-DW-7834-01 17 18212208 18212208 A G TOP3A Silent p.H76H 0.31 TCGA-DW-7834-01 17 42945230 42945230 G A EFTUD2 Missense_Mutation p.S365F 0.58 deleterious(0.01) possibly_damaging(0.824) TCGA-DW-7834-01 17 44845986 44845986 C T WNT3 Silent p.V256V 0.45 TCGA-DW-7834-01 17 72840356 72840356 A - GRIN2C Intron 0.28 TCGA-DW-7834-01 17 7464431 7464432 - A TNFSF12-TNFSF13 3'UTR 0.32 TCGA-DW-7834-01 17 78321576 78321576 C T RNF213 Silent p.R3147R 0.07 TCGA-DW-7834-01 18 65181492 65181492 A G DSEL Silent p.N128N 0.30 TCGA-DW-7834-01 19 14584193 14584193 G T PTGER1 Missense_Mutation p.L314M 0.27 deleterious(0) probably_damaging(0.961) TCGA-DW-7834-01 19 2151253 2151253 G C AP3D1 Missense_Mutation p.N27K 0.44 deleterious(0.03) benign(0.142) TCGA-DW-7834-01 19 40478461 40478461 A G PSMC4 Silent p.T107T 0.24 TCGA-DW-7834-01 19 42861598 42861598 C G MEGF8 Missense_Mutation p.L1558V 0.27 deleterious(0) probably_damaging(0.959) TCGA-DW-7834-01 19 54818652 54818652 G T LILRA5 3'UTR 0.18 TCGA-DW-7834-01 19 58805588 58805588 G A ZNF8 Silent p.G138G 0.24 TCGA-DW-7834-01 19 860929 860929 T G CFD Missense_Mutation p.L94R 0.36 tolerated(0.08) benign(0.021) TCGA-DW-7834-01 1 161092019 161092019 A C DEDD Missense_Mutation p.L292R 0.34 deleterious(0) probably_damaging(0.999) TCGA-DW-7834-01 1 192547354 192547354 G C RGS1 Missense_Mutation p.G95R 0.27 deleterious(0) probably_damaging(1) TCGA-DW-7834-01 1 201980419 201980420 - G ELF3 Frame_Shift_Ins p.T54Yfs*38 0.08 TCGA-DW-7834-01 1 208215581 208215581 C T PLXNA2 Missense_Mutation p.R1383Q 0.33 deleterious(0.02) probably_damaging(0.979) TCGA-DW-7834-01 1 229631732 229631732 G T NUP133 Silent p.I294I 0.41 TCGA-DW-7834-01 1 24421403 24421403 G T MYOM3 Missense_Mutation p.L290M 0.34 deleterious(0.02) probably_damaging(0.98) TCGA-DW-7834-01 1 27087947 27087947 G A ARID1A Missense_Mutation p.S745N 0.07 unknown(0) TCGA-DW-7834-01 1 32100955 32100955 C A PEF1 Nonsense_Mutation p.G65* 0.34 TCGA-DW-7834-01 1 43649478 43649478 G C WDR65 Missense_Mutation p.E231Q 0.26 tolerated(0.07) possibly_damaging(0.88) TCGA-DW-7834-01 1 70385302 70385302 G A LRRC7 Intron 0.17 TCGA-DW-7834-01 20 34021660 34021660 A G GDF5 3'UTR 0.32 TCGA-DW-7834-01 20 56227616 56227616 C T PMEPA1 Silent p.L119L 0.23 TCGA-DW-7834-01 20 61468580 61468580 C T COL9A3 Silent p.R583R 0.31 TCGA-DW-7834-01 21 16337670 16337670 A G NRIP1 Silent p.D948D 0.28 TCGA-DW-7834-01 21 22658662 22658662 A T NCAM2 Silent p.R137R 0.25 TCGA-DW-7834-01 21 34932382 34932382 A G SON Intron 0.31 TCGA-DW-7834-01 22 18021911 18021911 C T CECR2 Silent p.C672C 0.27 TCGA-DW-7834-01 22 29656765 29656765 C A RHBDD3 Silent p.G207G 0.33 TCGA-DW-7834-01 2 11913751 11913751 T C LPIN1 Missense_Mutation p.L250P 0.30 tolerated(0.34) benign(0.005) TCGA-DW-7834-01 2 137928319 137928319 A G THSD7B Missense_Mutation p.T512A 0.12 deleterious(0.03) benign(0.388) TCGA-DW-7834-01 2 163167397 163167397 A G IFIH1 Missense_Mutation p.L167P 0.26 deleterious(0) probably_damaging(1) TCGA-DW-7834-01 2 192543405 192543405 A C NABP1 Missense_Mutation p.N22T 0.31 deleterious(0.03) benign(0.053) TCGA-DW-7834-01 2 198274598 198274598 G T SF3B1 Missense_Mutation p.T267N 0.34 deleterious(0.05) benign(0.022) TCGA-DW-7834-01 3 51982616 51982616 T C PARP3 3'UTR 0.25 TCGA-DW-7834-01 3 9691346 9691346 C G MTMR14 Missense_Mutation p.L27V 0.20 tolerated(1) benign(0.021) TCGA-DW-7834-01 4 169172121 169172121 C T DDX60 Missense_Mutation p.R1281K 0.24 deleterious(0.03) possibly_damaging(0.58) TCGA-DW-7834-01 4 169433375 169433375 G A PALLD Silent p.R240R 0.04 TCGA-DW-7834-01 4 184166688 184166688 A C WWC2 Missense_Mutation p.D241A 0.25 deleterious(0) probably_damaging(0.998) TCGA-DW-7834-01 5 32074625 32074625 G T PDZD2 Missense_Mutation p.S1138I 0.38 tolerated(0.11) benign(0.391) TCGA-DW-7834-01 5 33938277 33938277 G C RXFP3 3'UTR 0.30 TCGA-DW-7834-01 5 42807146 42807146 T A SEPP1 Missense_Mutation p.N90Y 0.19 deleterious(0) probably_damaging(0.974) TCGA-DW-7834-01 5 72383545 72383545 A G FCHO2 Missense_Mutation p.Y792C 0.27 deleterious(0) probably_damaging(1) TCGA-DW-7834-01 5 82785943 82785943 A T VCAN Missense_Mutation p.R33W 0.26 deleterious(0) probably_damaging(0.945) TCGA-DW-7834-01 6 117245902 117245902 T A RFX6 Missense_Mutation p.N542K 0.22 tolerated(0.13) benign(0.325) TCGA-DW-7834-01 6 170886625 170886625 T G PDCD2 3'UTR 0.32 TCGA-DW-7834-01 6 30888201 30888201 T C VARS2 Missense_Mutation p.L492P 0.30 deleterious(0) probably_damaging(0.998) TCGA-DW-7834-01 6 35260658 35260658 C T ZNF76 Missense_Mutation p.A389V 0.30 tolerated(0.2) benign(0.046) TCGA-DW-7834-01 6 38709565 38709565 A G DNAH8 Missense_Mutation p.M182V 0.33 benign(0.145) TCGA-DW-7834-01 6 42147152 42147152 C A GUCA1A 3'UTR 0.40 TCGA-DW-7834-01 6 42610219 42610220 - GTAAT UBR2 Frame_Shift_Ins 0.26 TCGA-DW-7834-01 6 69943243 69943243 C T BAI3 Missense_Mutation p.H848Y 0.31 tolerated(0.06) probably_damaging(0.992) TCGA-DW-7834-01 7 121944146 121944146 T G FEZF1 Missense_Mutation p.S116R 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.599) TCGA-DW-7834-01 7 139107032 139107032 T A LUC7L2 Missense_Mutation p.N441K 0.51 deleterious_low_confidence(0) unknown(0) TCGA-DW-7834-01 7 44152208 44152208 G C AEBP1 Missense_Mutation p.V757L 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-DW-7834-01 7 44714122 44714122 G A OGDH Missense_Mutation p.G301S 0.43 deleterious(0) probably_damaging(1) TCGA-DW-7834-01 7 54617692 54617692 C T VSTM2A Missense_Mutation p.R155C 0.38 deleterious(0.01) probably_damaging(0.939) TCGA-DW-7834-01 8 10390473 10390473 G A PRSS55 Nonsense_Mutation p.W219* 0.36 TCGA-DW-7834-01 8 27888815 27888815 C G NUGGC Missense_Mutation p.G618A 0.24 tolerated(0.12) benign(0.345) TCGA-DW-7834-01 X 135314169 135314169 T C MAP7D3 Missense_Mutation p.N316S 0.11 tolerated(0.49) benign(0.096) TCGA-DW-7834-01 X 20194424 20194424 C T RPS6KA3 Missense_Mutation p.G349D 0.10 tolerated(0.12) possibly_damaging(0.846) TCGA-DW-7836-01 10 17891759 17891759 C T MRC1L1 Silent p.L414L 0.39 TCGA-DW-7836-01 10 75214208 75214208 T C PPP3CB Missense_Mutation p.D383G 0.31 deleterious(0.01) benign(0.049) TCGA-DW-7836-01 11 62298802 62298802 A C AHNAK Missense_Mutation p.I1029M 0.51 probably_damaging(0.915) TCGA-DW-7836-01 11 73021701 73021701 C A ARHGEF17 Nonsense_Mutation p.S673* 0.08 TCGA-DW-7836-01 12 10342575 10342575 T C TMEM52B Missense_Mutation p.S110P 0.58 tolerated(0.36) benign(0.014) TCGA-DW-7836-01 12 120882669 120882669 T A TRIAP1 3'UTR 0.48 TCGA-DW-7836-01 12 31242022 31242022 G A DDX11 Silent p.V243V 0.26 TCGA-DW-7836-01 12 53188038 53188038 G C KRT3 Missense_Mutation p.I241M 0.38 tolerated(0.17) benign(0.18) TCGA-DW-7836-01 14 23830017 23830017 T A EFS Missense_Mutation p.D15V 0.33 deleterious(0) probably_damaging(1) TCGA-DW-7836-01 14 64587724 64587724 C T SYNE2 Missense_Mutation p.S4368F 0.52 benign(0.009) TCGA-DW-7836-01 16 22324995 22324995 C A POLR3E Missense_Mutation p.S140Y 0.62 deleterious(0) possibly_damaging(0.905) TCGA-DW-7836-01 16 69294139 69294139 G A SNTB2 Silent p.K327K 0.61 TCGA-DW-7836-01 17 1386297 1386297 G C MYO1C Missense_Mutation p.A135G 0.14 deleterious(0.02) benign(0.257) TCGA-DW-7836-01 17 26864406 26864406 C - FOXN1 Frame_Shift_Del p.S635Lfs*41 0.18 TCGA-DW-7836-01 17 27005892 27005892 G A SUPT6H Missense_Mutation p.M420I 0.63 deleterious(0.04) benign(0.298) TCGA-DW-7836-01 17 48462617 48462617 T A LRRC59 Nonsense_Mutation p.K180* 0.28 TCGA-DW-7836-01 17 5461735 5461735 T A NLRP1 Missense_Mutation p.S761C 0.29 tolerated(1) benign(0) TCGA-DW-7836-01 18 2552727 2552727 G A METTL4 Missense_Mutation p.P289L 0.58 deleterious(0) probably_damaging(1) TCGA-DW-7836-01 19 14508541 14508541 T A CD97 Missense_Mutation p.Y233N 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-DW-7836-01 19 14876545 14876545 A T EMR2 Missense_Mutation p.Y236N 0.18 deleterious(0.02) possibly_damaging(0.734) TCGA-DW-7836-01 19 39219691 39219691 T C ACTN4 Missense_Mutation p.L825P 0.45 tolerated(0.14) benign(0.039) TCGA-DW-7836-01 19 54214270 54214270 C T MIR524 RNA 0.28 TCGA-DW-7836-01 19 55148239 55148239 C A LILRB1 Silent p.T623T 0.30 TCGA-DW-7836-01 19 5789679 5789679 C A DUS3L Missense_Mutation p.V147L 0.33 tolerated(0.31) benign(0.02) TCGA-DW-7836-01 19 9452847 9452847 C A ZNF559 Missense_Mutation p.F240L 0.44 tolerated(0.17) benign(0) TCGA-DW-7836-01 19 9452848 9452848 T A ZNF559 Missense_Mutation p.Y241N 0.45 deleterious(0.01) benign(0.029) TCGA-DW-7836-01 1 159752041 159752041 T A DUSP23 Silent p.I122I 0.49 TCGA-DW-7836-01 1 161197494 161197494 G T TOMM40L Missense_Mutation p.L115F 0.54 tolerated(0.49) possibly_damaging(0.633) TCGA-DW-7836-01 1 201013478 201013478 G A CACNA1S Missense_Mutation p.A1592V 0.46 deleterious(0.03) benign(0.032) TCGA-DW-7836-01 1 236385229 236385229 A G ERO1LB Silent p.L402L 0.54 TCGA-DW-7836-01 1 248129596 248129596 A G OR2AK2 Silent p.G321G 0.42 TCGA-DW-7836-01 1 27271886 27271886 T C NUDC Silent p.N249N 0.44 TCGA-DW-7836-01 22 17444670 17444670 G C GAB4 Missense_Mutation p.P509R 0.33 tolerated(0.17) benign(0.022) TCGA-DW-7836-01 22 19175579 19175579 G C CLTCL1 Missense_Mutation p.P1450A 0.37 deleterious(0.03) probably_damaging(0.917) TCGA-DW-7836-01 22 30805245 30805245 A C SEC14L2 Missense_Mutation p.K165Q 0.52 deleterious(0) probably_damaging(0.998) TCGA-DW-7836-01 2 202606404 202606404 A - ALS2 Frame_Shift_Del p.Y782Ifs*28 0.27 TCGA-DW-7836-01 2 208425071 208425071 A G CREB1 Missense_Mutation p.Q79R 0.45 deleterious(0.01) probably_damaging(0.985) TCGA-DW-7836-01 2 218749811 218749811 A T TNS1 Missense_Mutation p.I273N 0.43 deleterious(0) probably_damaging(0.974) TCGA-DW-7836-01 2 33246142 33246142 T A LTBP1 Silent p.P244P 0.35 TCGA-DW-7836-01 2 99861757 99861757 C A LYG2 Missense_Mutation p.D117Y 0.42 deleterious(0) probably_damaging(0.989) TCGA-DW-7836-01 3 192078219 192078219 T C FGF12 Missense_Mutation p.Y103C 0.25 tolerated(0.07) possibly_damaging(0.747) TCGA-DW-7836-01 3 50129618 50129618 T G RBM5 Missense_Mutation p.Y54D 0.57 tolerated(0.19) possibly_damaging(0.485) TCGA-DW-7836-01 4 156136064 156136064 T C NPY2R Missense_Mutation p.Y325H 0.41 deleterious(0) probably_damaging(1) TCGA-DW-7836-01 4 39409050 39409050 G A KLB Missense_Mutation p.D161N 0.43 tolerated(0.94) benign(0.013) TCGA-DW-7836-01 5 139919043 139919043 T A ANKHD1 Intron 0.95 TCGA-DW-7836-01 6 73904447 73904447 C T KCNQ5 Silent p.Y722Y 0.46 TCGA-DW-7836-01 7 107335130 107335130 C A SLC26A4 Missense_Mutation p.P469H 0.63 deleterious(0.04) probably_damaging(1) TCGA-DW-7836-01 7 44012233 44012233 A T POLR2J4 RNA 0.25 TCGA-DW-7836-01 8 113697851 113697852 CT G CSMD3 Frame_Shift_Del p.S757Afs*96 0.35 TCGA-DW-7836-01 8 39068760 39068760 C T ADAM32 Nonsense_Mutation p.Q384* 0.67 TCGA-DW-7836-01 9 119976826 119976826 G T ASTN2 Missense_Mutation p.H276N 0.33 tolerated_low_confidence(0.09) unknown(0) TCGA-DW-7836-01 X 2867409 2867409 G A ARSE Nonsense_Mutation p.Q264* 0.95 TCGA-DW-7836-01 X 54475683 54475683 G A FGD1 Missense_Mutation p.R723W 0.09 deleterious(0.01) probably_damaging(0.948) TCGA-DW-7837-01 10 13658431 13658431 A G RP11-295P9.3 Missense_Mutation p.N153D 0.28 deleterious(0) probably_damaging(0.927) TCGA-DW-7837-01 10 16957909 16957910 - A CUBN Frame_Shift_Ins p.Y2374Lfs*7 0.28 TCGA-DW-7837-01 11 67203274 67203287 GCAAAGGCGTGCAG - PTPRCAP Frame_Shift_Del p.L180Wfs*7 0.36 TCGA-DW-7837-01 11 73066676 73066676 C G ARHGEF17 Silent p.A1184A 0.35 TCGA-DW-7837-01 11 94532582 94532582 T G AMOTL1 Missense_Mutation p.S76A 0.58 tolerated_low_confidence(1) benign(0.001) TCGA-DW-7837-01 13 24895929 24895929 C T C1QTNF9 3'UTR 0.37 TCGA-DW-7837-01 15 66180113 66180113 G C RAB11A Missense_Mutation p.V196L 0.11 tolerated_low_confidence(0.21) benign(0.001) TCGA-DW-7837-01 16 57265132 57265132 A G RSPRY1 Missense_Mutation p.N477S 0.29 deleterious(0) probably_damaging(0.996) TCGA-DW-7837-01 17 15935762 15935762 G C NCOR1 Missense_Mutation p.R2391G 0.20 benign(0.005) TCGA-DW-7837-01 17 41180521 41180521 G A RND2 Missense_Mutation p.V170I 0.27 tolerated(0.14) possibly_damaging(0.619) TCGA-DW-7837-01 17 74005355 74005355 T G EVPL Missense_Mutation p.K1311Q 0.22 tolerated(0.21) benign(0.1) TCGA-DW-7837-01 17 80053200 80053200 G A FASN Silent p.D92D 0.11 TCGA-DW-7837-01 19 42861619 42861619 T C MEGF8 Missense_Mutation p.S1565P 0.32 deleterious(0) probably_damaging(0.975) TCGA-DW-7837-01 19 56539072 56539072 C T NLRP5 Silent p.V491V 0.45 TCGA-DW-7837-01 19 6375028 6375028 G A ALKBH7 3'UTR 0.28 TCGA-DW-7837-01 1 15890499 15890500 GA - DNAJC16 Frame_Shift_Del p.S473* 0.24 TCGA-DW-7837-01 1 77528824 77528824 T G ST6GALNAC5 Missense_Mutation p.F315C 0.31 probably_damaging(1) TCGA-DW-7837-01 1 77528835 77528835 G A ST6GALNAC5 Missense_Mutation p.D319N 0.30 benign(0.04) TCGA-DW-7837-01 20 33591257 33591257 G T TRPC4AP Missense_Mutation p.Q738K 0.29 tolerated(0.71) benign(0.031) TCGA-DW-7837-01 20 62078166 62078166 G C KCNQ2 Silent p.L107L 0.30 TCGA-DW-7837-01 2 122206659 122206659 C T CLASP1 Missense_Mutation p.A521T 0.30 deleterious(0.01) probably_damaging(1) TCGA-DW-7837-01 2 180309603 180309603 T A ZNF385B Silent p.A399A 0.30 TCGA-DW-7837-01 3 14695999 14695999 G C CCDC174 Missense_Mutation p.D37H 0.41 deleterious(0) benign(0.043) TCGA-DW-7837-01 4 169337906 169337906 G A DDX60L Missense_Mutation p.L885F 0.30 deleterious(0.02) benign(0.088) TCGA-DW-7837-01 5 56177037 56177037 T A MAP3K1 Silent p.P769P 0.32 TCGA-DW-7837-01 7 107216872 107216872 T A DUS4L Missense_Mutation p.S181T 0.27 tolerated(0.2) possibly_damaging(0.514) TCGA-DW-7837-01 7 138145434 138145434 G A TRIM24 Silent p.A47A 0.44 TCGA-DW-7837-01 7 72298673 72298673 G A TYW1B 5'UTR 0.29 TCGA-DW-7837-01 8 145730807 145730807 T C GPT Missense_Mutation p.L225P 0.21 deleterious(0) benign(0.111) TCGA-DW-7837-01 8 27457323 27457323 C G CLU Missense_Mutation p.D380H 0.38 deleterious(0) possibly_damaging(0.519) TCGA-DW-7837-01 8 41791942 41791942 T G KAT6A Missense_Mutation p.K1266Q 0.33 unknown(0) TCGA-DW-7837-01 9 133759489 133759489 C A ABL1 Silent p.I623I 0.35 TCGA-DW-7838-01 10 104176443 104176443 G C PSD Missense_Mutation p.P118R 0.21 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DW-7838-01 10 127782637 127782637 C G ADAM12 Silent p.G357G 0.16 TCGA-DW-7838-01 10 5139633 5139633 C G AKR1C3 Missense_Mutation p.S87C 0.20 tolerated(1) benign(0.048) TCGA-DW-7838-01 10 6008174 6008174 T C IL15RA Missense_Mutation p.T73A 0.14 deleterious(0) probably_damaging(0.969) TCGA-DW-7838-01 10 76980587 76980587 C T VDAC2 Missense_Mutation p.A163V 0.16 tolerated(0.22) benign(0.01) TCGA-DW-7838-01 10 88705024 88705026 ATC - MMRN2 Splice_Site p.X134_splice 0.19 TCGA-DW-7838-01 10 93773747 93773747 A T BTAF1 Missense_Mutation p.K1515N 0.12 deleterious(0) probably_damaging(1) TCGA-DW-7838-01 10 99222420 99222420 C T MMS19 Silent p.L644L 0.12 TCGA-DW-7838-01 11 1459605 1459605 G A BRSK2 Missense_Mutation p.E132K 0.13 deleterious(0) probably_damaging(0.986) TCGA-DW-7838-01 11 33770334 33770334 G T FBXO3 Missense_Mutation p.P346H 0.21 deleterious(0) probably_damaging(1) TCGA-DW-7838-01 11 67412339 67412339 A G ACY3 Silent p.G212G 0.13 TCGA-DW-7838-01 12 14613823 14613823 C T ATF7IP Silent p.P851P 0.14 TCGA-DW-7838-01 12 15134417 15134417 A T PDE6H 3'UTR 0.23 TCGA-DW-7838-01 12 53431279 53431279 C T EIF4B Missense_Mutation p.P465S 0.12 tolerated(0.56) benign(0.109) TCGA-DW-7838-01 12 6968684 6968684 C T USP5 Missense_Mutation p.T370I 0.23 deleterious(0.05) possibly_damaging(0.644) TCGA-DW-7838-01 14 22968715 22968715 G A TRAJ40 Missense_Mutation p.R15K 0.25 unknown(0) TCGA-DW-7838-01 14 22968732 22968732 A G TRAJ40 Silent p.%3D 0.21 TCGA-DW-7838-01 14 64633998 64633998 G A SYNE2 Silent p.L5551L 0.09 TCGA-DW-7838-01 14 95670344 95670344 C T CLMN Missense_Mutation p.G448R 0.21 tolerated_low_confidence(0.07) benign(0.382) TCGA-DW-7838-01 15 42149779 42149779 C G SPTBN5 Missense_Mutation p.A2786P 0.32 probably_damaging(0.982) TCGA-DW-7838-01 16 30035201 30035219 ACTCAGGTATGAACCAGCT - C16orf92 Splice_Site p.X95_splice 0.22 TCGA-DW-7838-01 16 51172851 51172851 A G SALL1 Silent p.H1094H 0.15 TCGA-DW-7838-01 16 58713827 58713827 C T SLC38A7 Silent p.G68G 0.14 TCGA-DW-7838-01 16 67577079 67577079 T A FAM65A Missense_Mutation p.L817Q 0.34 deleterious(0) possibly_damaging(0.766) TCGA-DW-7838-01 17 32614739 32614739 G A CCL11 3'UTR 0.16 TCGA-DW-7838-01 17 32614740 32614740 C T CCL11 3'UTR 0.16 TCGA-DW-7838-01 17 38420797 38420806 AAGGCCTCCA TCCG WIPF2 In_Frame_Del p.R124_P125del 0.29 TCGA-DW-7838-01 17 3919676 3919676 C A ZZEF1 Nonsense_Mutation p.G2696* 0.23 TCGA-DW-7838-01 17 39577782 39577782 C G KRT37 Missense_Mutation p.A360P 0.11 deleterious(0.01) benign(0.132) TCGA-DW-7838-01 17 60023946 60023946 C G MED13 Missense_Mutation p.Q2136H 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-DW-7838-01 17 74163165 74163165 C A RNF157 Missense_Mutation p.Q162H 0.12 tolerated(1) benign(0) TCGA-DW-7838-01 17 76212806 76212806 G A BIRC5 Missense_Mutation p.E118K 0.25 tolerated(0.09) benign(0.142) TCGA-DW-7838-01 18 10471914 10471914 G A APCDD1 Silent p.Q210Q 0.17 TCGA-DW-7838-01 18 13071144 13071144 G T CEP192 Missense_Mutation p.D1761Y 0.22 deleterious(0) benign(0.126) TCGA-DW-7838-01 18 14105675 14105675 T C ZNF519 Silent p.G288G 0.23 TCGA-DW-7838-01 18 21451430 21451430 G T LAMA3 Silent p.V1601V 0.14 TCGA-DW-7838-01 18 22805629 22805629 G C ZNF521 Silent p.V751V 0.17 TCGA-DW-7838-01 18 34802114 34802114 G C KIAA1328 Missense_Mutation p.R553P 0.43 tolerated(0.18) possibly_damaging(0.548) TCGA-DW-7838-01 19 21240780 21240780 C G ZNF430 Missense_Mutation p.L556V 0.24 deleterious(0.01) possibly_damaging(0.726) TCGA-DW-7838-01 19 2425910 2425910 T A TIMM13 3'UTR 0.13 TCGA-DW-7838-01 19 32930113 32930113 T G DPY19L3 Missense_Mutation p.L231R 0.19 deleterious(0) probably_damaging(0.995) TCGA-DW-7838-01 19 43858482 43858482 A G CD177 Missense_Mutation p.Q106R 0.17 tolerated(0.31) benign(0.108) TCGA-DW-7838-01 19 44739499 44739499 T - ZNF227 Frame_Shift_Del p.F306Sfs*146 0.08 TCGA-DW-7838-01 19 49206557 49206557 A C FUT2 Missense_Mutation p.H115P 0.08 tolerated(0.42) benign(0.327) TCGA-DW-7838-01 19 50550199 50550199 G T ZNF473 Silent p.L833L 0.25 TCGA-DW-7838-01 19 52004707 52004707 T A SIGLEC12 Missense_Mutation p.H94L 0.12 tolerated(0.23) benign(0.229) TCGA-DW-7838-01 19 53303801 53303801 G C ZNF28 Missense_Mutation p.H433D 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-DW-7838-01 19 53958007 53958007 T G ZNF761 RNA 0.10 TCGA-DW-7838-01 19 55401195 55401195 T G FCAR Missense_Mutation p.L277W 0.15 tolerated_low_confidence(0.45) benign(0) TCGA-DW-7838-01 19 55401196 55401196 G T FCAR Missense_Mutation p.L277F 0.16 tolerated_low_confidence(0.2) benign(0.036) TCGA-DW-7838-01 1 109554105 109554105 T - WDR47 Frame_Shift_Del p.K195Rfs*11 0.16 TCGA-DW-7838-01 1 145561665 145561665 C T ANKRD35 Silent p.T451T 0.19 TCGA-DW-7838-01 1 152191362 152191362 G A HRNR Missense_Mutation p.R915W 0.20 unknown(0) TCGA-DW-7838-01 1 154961016 154961016 G A FLAD1 Missense_Mutation p.G270R 0.14 tolerated(0.45) benign(0.222) TCGA-DW-7838-01 1 26386776 26386776 T A TRIM63 Missense_Mutation p.D193V 0.19 deleterious(0) possibly_damaging(0.556) TCGA-DW-7838-01 1 31897695 31897695 G A SERINC2 Missense_Mutation p.D132N 0.16 deleterious(0) probably_damaging(0.98) TCGA-DW-7838-01 1 45206651 45206651 C A KIF2C Missense_Mutation p.A46E 0.10 tolerated(0.14) benign(0.017) TCGA-DW-7838-01 20 43752864 43752864 C T WFDC12 Missense_Mutation p.C41Y 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-DW-7838-01 20 62374341 62374341 T C SLC2A4RG Nonstop_Mutation p.*388Qext*69 0.27 TCGA-DW-7838-01 21 43732212 43732212 A G TFF3 3'UTR 0.33 TCGA-DW-7838-01 2 132236969 132236969 G A TUBA3D Silent p.R105R 0.16 TCGA-DW-7838-01 2 164466515 164466515 A T FIGN Missense_Mutation p.F609L 0.21 tolerated(1) benign(0.01) TCGA-DW-7838-01 2 179650403 179650403 T A TTN Missense_Mutation p.S813C 0.17 TCGA-DW-7838-01 2 238303376 238303376 A G COL6A3 Missense_Mutation p.I188T 0.15 benign(0.085) TCGA-DW-7838-01 2 241516157 241516157 C T RNPEPL1 Silent p.L341L 0.14 TCGA-DW-7838-01 2 74761483 74761483 G A LOXL3 Silent p.H633H 0.15 TCGA-DW-7838-01 2 86279952 86279952 C T POLR1A Missense_Mutation p.G794S 0.11 deleterious(0) probably_damaging(1) TCGA-DW-7838-01 3 107491690 107491690 G C BBX Missense_Mutation p.E374D 0.42 tolerated(0.14) benign(0.015) TCGA-DW-7838-01 3 119246583 119246583 C G CD80 3'UTR 0.31 TCGA-DW-7838-01 3 123166392 123166392 A - ADCY5 Frame_Shift_Del p.F334Sfs*43 0.19 TCGA-DW-7838-01 3 153993923 153993923 T G DHX36 3'UTR 0.10 TCGA-DW-7838-01 3 184922367 184922367 G A EHHADH Silent p.I249I 0.31 TCGA-DW-7838-01 3 47456625 47456625 C T SCAP Silent p.L1034L 0.24 TCGA-DW-7838-01 3 50602964 50602964 G A C3orf18 Missense_Mutation p.T56M 0.20 deleterious(0.02) possibly_damaging(0.595) TCGA-DW-7838-01 4 104070327 104070327 A T CENPE Missense_Mutation p.F1212Y 0.22 possibly_damaging(0.529) TCGA-DW-7838-01 4 13601157 13601157 A G BOD1L1 Missense_Mutation p.L2456P 0.05 benign(0.007) TCGA-DW-7838-01 4 164392978 164392978 G C TKTL2 3'UTR 0.22 TCGA-DW-7838-01 4 37650975 37650975 T A RELL1 Missense_Mutation p.H79L 0.11 deleterious(0) probably_damaging(1) TCGA-DW-7838-01 4 6066676 6066676 C T JAKMIP1 Silent p.L454L 0.07 TCGA-DW-7838-01 4 88583660 88583660 G A DMP1 Missense_Mutation p.E244K 0.07 tolerated(0.7) benign(0.339) TCGA-DW-7838-01 5 118824931 118824931 C T HSD17B4 Missense_Mutation p.L248F 0.32 tolerated(0.08) possibly_damaging(0.832) TCGA-DW-7838-01 5 123980011 123980011 G A ZNF608 Missense_Mutation p.P1350L 0.16 deleterious(0) probably_damaging(0.999) TCGA-DW-7838-01 5 89953910 89953915 AAATCA - GPR98 In_Frame_Del p.K1523_S1524del 0.28 TCGA-DW-7838-01 5 93856481 93856481 A C KIAA0825 Missense_Mutation p.S148A 0.24 tolerated(0.78) benign(0.023) TCGA-DW-7838-01 6 117249981 117249981 C A RFX6 Missense_Mutation p.Q820K 0.18 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-DW-7838-01 6 138727187 138727187 C A HEBP2 Silent p.T106T 0.18 TCGA-DW-7838-01 6 46867766 46867766 C A GPR116 Missense_Mutation p.V53F 0.21 deleterious(0) possibly_damaging(0.796) TCGA-DW-7838-01 7 100361742 100361742 C T ZAN Missense_Mutation p.T1397I 0.41 unknown(0) TCGA-DW-7838-01 7 129962495 129962495 T C CPA4 Silent p.H415H 0.20 TCGA-DW-7838-01 7 129962499 129962499 C T CPA4 Missense_Mutation p.R417W 0.23 tolerated(0.09) benign(0.094) TCGA-DW-7838-01 7 134260620 134260620 C T AKR1B15 Silent p.C228C 0.16 TCGA-DW-7838-01 7 138281232 138281232 G A SVOPL Missense_Mutation p.S466L 0.14 deleterious(0.01) benign(0.201) TCGA-DW-7838-01 7 148979208 148979208 G A ZNF783 Missense_Mutation p.G472D 0.07 deleterious(0) possibly_damaging(0.734) TCGA-DW-7838-01 7 149152518 149152518 A T ZNF777 Missense_Mutation p.L199Q 0.22 deleterious(0) possibly_damaging(0.894) TCGA-DW-7838-01 7 158902583 158902587 GTGAT - VIPR2 Frame_Shift_Del p.I59Vfs*36 0.09 TCGA-DW-7838-01 7 39446255 39446255 C T POU6F2 Silent p.S314S 0.31 TCGA-DW-7838-01 7 43982648 43982649 - T UBE2D4 Intron 0.17 TCGA-DW-7838-01 7 44805818 44805818 C G ZMIZ2 Silent p.P766P 0.14 TCGA-DW-7838-01 7 6035170 6035170 C T PMS2 Missense_Mutation p.A300T 0.28 tolerated(0.18) benign(0.025) TCGA-DW-7838-01 7 86808890 86808890 C - DMTF1 Frame_Shift_Del p.I184Sfs*16 0.19 TCGA-DW-7838-01 7 99454477 99454477 C A CYP3A43 Missense_Mutation p.Q274K 0.10 deleterious(0) benign(0.003) TCGA-DW-7838-01 8 143381927 143381927 C G TSNARE1 Missense_Mutation p.E404Q 0.13 tolerated(0.14) benign(0.057) TCGA-DW-7838-01 8 145729984 145729984 C A GPT Intron 0.27 TCGA-DW-7838-01 9 100368460 100368460 G T TSTD2 Missense_Mutation p.L307I 0.12 tolerated(0.06) benign(0.424) TCGA-DW-7838-01 9 116018468 116018469 - C SLC31A1 Frame_Shift_Ins p.N15Qfs*38 0.12 TCGA-DW-7838-01 9 125316283 125316283 C - OR1N2 Frame_Shift_Del p.P279Lfs*19 0.16 TCGA-DW-7838-01 9 128001454 128001454 A G HSPA5 Silent p.G254G 0.12 TCGA-DW-7838-01 9 131476565 131476565 C A PKN3 Missense_Mutation p.P468T 0.17 tolerated(0.8) possibly_damaging(0.848) TCGA-DW-7838-01 9 131512978 131512978 A G ZER1 Missense_Mutation p.Y426H 0.16 tolerated(0.53) benign(0.172) TCGA-DW-7838-01 9 33255131 33255131 T C BAG1 3'UTR 0.23 TCGA-DW-7838-01 9 97863944 97863944 G A FANCC 3'UTR 0.23 TCGA-DW-7838-01 9 99489494 99489494 A G RP11-535M15.2 RNA 0.12 TCGA-DW-7838-01 X 110366494 110366494 G A PAK3 Missense_Mutation p.G55R 0.30 tolerated(0.18) probably_damaging(0.972) TCGA-DW-7838-01 X 69595071 69595071 G A KIF4A Missense_Mutation p.R599H 0.10 deleterious(0.02) benign(0.081) TCGA-DW-7839-01 10 16943441 16943441 T C CUBN Missense_Mutation p.I2694V 0.57 tolerated(0.36) benign(0.001) TCGA-DW-7839-01 10 83635770 83635770 C A NRG3 Missense_Mutation p.P225H 0.48 deleterious(0) probably_damaging(0.999) TCGA-DW-7839-01 11 126147693 126147693 C T FOXRED1 3'UTR 0.35 TCGA-DW-7839-01 11 55658774 55658774 A G TRIM51 Missense_Mutation p.Y342C 0.44 deleterious(0) probably_damaging(1) TCGA-DW-7839-01 11 66114291 66114291 T A B3GNT1 Missense_Mutation p.E242D 0.48 tolerated(0.59) benign(0.026) TCGA-DW-7839-01 11 723296 723296 C A EPS8L2 Nonsense_Mutation p.S466* 0.44 TCGA-DW-7839-01 11 85722090 85722090 A G PICALM Missense_Mutation p.F250L 0.58 deleterious(0) probably_damaging(0.947) TCGA-DW-7839-01 11 92590392 92590392 C T FAT3 Missense_Mutation p.P3793L 0.46 benign(0.425) TCGA-DW-7839-01 12 116429670 116429670 G C MED13L Missense_Mutation p.A1030G 0.45 tolerated(0.15) unknown(0) TCGA-DW-7839-01 12 27787953 27787953 T C PPFIBP1 Silent p.L59L 0.46 TCGA-DW-7839-01 12 3149691 3149694 CGGG - TEAD4 3'UTR 0.52 TCGA-DW-7839-01 12 49333834 49333834 C G ARF3 Missense_Mutation p.G69R 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.45) TCGA-DW-7839-01 12 57920964 57920964 C T MBD6 Missense_Mutation p.A679V 0.69 deleterious_low_confidence(0) unknown(0) TCGA-DW-7839-01 13 33700266 33700266 T G STARD13 Missense_Mutation p.Q678H 0.49 deleterious(0.02) possibly_damaging(0.82) TCGA-DW-7839-01 14 61449295 61449295 A C SLC38A6 Missense_Mutation p.M59L 0.46 tolerated(0.08) benign(0.044) TCGA-DW-7839-01 15 41796537 41796537 C T LTK Intron 0.38 TCGA-DW-7839-01 15 83518619 83518620 - T HOMER2 Frame_Shift_Ins p.V305Sfs*9 0.38 TCGA-DW-7839-01 16 24802526 24802526 G - TNRC6A Frame_Shift_Del p.D855Ifs*48 0.28 TCGA-DW-7839-01 16 84228944 84228944 T A ADAD2 Missense_Mutation p.L341Q 0.36 deleterious(0) probably_damaging(0.996) TCGA-DW-7839-01 17 17721579 17721579 T C SREBF1 Missense_Mutation p.K423R 0.27 tolerated(0.06) benign(0.106) TCGA-DW-7839-01 17 35295436 35295436 C G LHX1 5'UTR 0.41 TCGA-DW-7839-01 17 37880219 37880219 T C ERBB2 Silent p.L755L 0.64 TCGA-DW-7839-01 17 37880220 37880220 T C ERBB2 Missense_Mutation p.L755S 0.62 deleterious(0) probably_damaging(1) TCGA-DW-7839-01 19 17660379 17660379 G - FAM129C Intron 0.33 TCGA-DW-7839-01 19 41352945 41352945 C T CYP2A6 Missense_Mutation p.M222I 0.23 benign(0.081) TCGA-DW-7839-01 19 41384830 41384830 C T CYP2A7 Missense_Mutation p.M222I 0.13 tolerated(0.31) benign(0.091) TCGA-DW-7839-01 19 46281110 46281110 C T DMPK Missense_Mutation p.G243S 0.45 deleterious(0.01) probably_damaging(1) TCGA-DW-7839-01 19 55494859 55494859 C T NLRP2 Missense_Mutation p.T598M 0.46 tolerated(0.23) possibly_damaging(0.769) TCGA-DW-7839-01 1 103400626 103400626 G - COL11A1 Frame_Shift_Del p.P1161Lfs*37 0.38 TCGA-DW-7839-01 1 204006295 204006295 C T LINC00303 Intron 0.43 TCGA-DW-7839-01 1 207818592 207818592 T G CR1L Missense_Mutation p.V5G 0.49 tolerated_low_confidence(0.35) benign(0.009) TCGA-DW-7839-01 1 212791490 212791490 A G ATF3 Missense_Mutation p.R88G 0.52 deleterious(0) probably_damaging(0.999) TCGA-DW-7839-01 1 228290925 228290925 A C C1orf35 Missense_Mutation p.F2V 0.60 deleterious(0) probably_damaging(0.976) TCGA-DW-7839-01 20 17933351 17933351 C G SNX5 Missense_Mutation p.E131D 0.44 tolerated(0.09) benign(0.043) TCGA-DW-7839-01 20 44258534 44258534 A - WFDC10A Frame_Shift_Del p.R28Gfs*49 0.31 TCGA-DW-7839-01 21 45564875 45564875 C G C21orf33 3'UTR 0.62 TCGA-DW-7839-01 22 38240305 38240305 T G ANKRD54 5'UTR 0.33 TCGA-DW-7839-01 2 108627345 108627345 C A SLC5A7 3'UTR 0.45 TCGA-DW-7839-01 2 214161997 214161997 C G SPAG16 Missense_Mutation p.D65E 0.38 tolerated(0.09) possibly_damaging(0.64) TCGA-DW-7839-01 2 73827935 73827935 T C ALMS1 Silent p.R3932R 0.52 TCGA-DW-7839-01 3 14106982 14106982 T C TPRXL 3'UTR 0.62 TCGA-DW-7839-01 3 142141567 142141567 A T XRN1 Missense_Mutation p.I275N 0.41 deleterious(0) possibly_damaging(0.702) TCGA-DW-7839-01 3 182597406 182597429 GCTGTCGTATGGCTCCACTGCAGA - ATP11B Nonsense_Mutation p.C792_K800delins* 0.19 TCGA-DW-7839-01 4 100140381 100140381 A G ADH6 5'UTR 0.55 TCGA-DW-7839-01 4 13604361 13604361 C T BOD1L1 Missense_Mutation p.S1388N 0.49 benign(0.051) TCGA-DW-7839-01 4 1701385 1701385 C G SLBP Missense_Mutation p.E129Q 0.48 deleterious(0) probably_damaging(0.993) TCGA-DW-7839-01 5 153078528 153078528 C G GRIA1 Missense_Mutation p.H459Q 0.44 tolerated(0.06) probably_damaging(1) TCGA-DW-7839-01 6 43044271 43044271 T G PTK7 5'Flank 0.70 TCGA-DW-7839-01 7 141731533 141731533 T G MGAM Silent p.V508V 0.48 TCGA-DW-7839-01 7 143175477 143175477 A T TAS2R41 Missense_Mutation p.K171M 0.40 tolerated(0.19) benign(0.067) TCGA-DW-7839-01 7 26235509 26235509 C T HNRNPA2B1 Missense_Mutation p.G239R 0.43 tolerated(0.13) unknown(0) TCGA-DW-7839-01 7 92734994 92734994 T - SAMD9 Frame_Shift_Del p.V140Lfs*4 0.32 TCGA-DW-7839-01 8 145746824 145746825 AT - LRRC14 Frame_Shift_Del p.I482Lfs*15 0.34 TCGA-DW-7839-01 9 19316719 19316719 A T DENND4C Missense_Mutation p.Q563H 0.45 deleterious(0) benign(0.315) TCGA-DW-7839-01 X 37028486 37028486 C T FAM47C Missense_Mutation p.P668L 0.40 tolerated(0.12) benign(0.007) TCGA-DW-7839-01 X 51075840 51075840 C T NUDT10 Missense_Mutation p.T8I 0.17 tolerated(0.28) benign(0.004) TCGA-DW-7839-01 X 51239274 51239274 G A NUDT11 Missense_Mutation p.T8M 0.52 deleterious(0.01) benign(0.028) TCGA-DW-7839-01 X 71351213 71351213 T C RGAG4 Missense_Mutation p.I60V 0.44 tolerated_low_confidence(0.48) benign(0.004) TCGA-DW-7840-01 10 115411657 115411657 T C NRAP Missense_Mutation p.K194E 0.31 deleterious(0) possibly_damaging(0.868) TCGA-DW-7840-01 10 14939337 14939337 A T SUV39H2 Missense_Mutation p.T224S 0.34 tolerated(0.44) benign(0.091) TCGA-DW-7840-01 10 14939338 14939338 C T SUV39H2 Missense_Mutation p.T224I 0.36 tolerated(0.31) benign(0.297) TCGA-DW-7840-01 10 24835172 24835172 T C KIAA1217 Silent p.H1917H 0.51 TCGA-DW-7840-01 10 28270470 28270470 T C ARMC4 Silent p.K287K 0.06 TCGA-DW-7840-01 10 35324145 35324145 G T CUL2 Silent p.I338I 0.36 TCGA-DW-7840-01 10 45869784 45869784 C A ALOX5 Missense_Mutation p.D19E 0.45 tolerated(0.27) possibly_damaging(0.63) TCGA-DW-7840-01 10 87407050 87407050 T C GRID1 Missense_Mutation p.Q701R 0.37 tolerated(0.63) probably_damaging(0.996) TCGA-DW-7840-01 11 118513026 118513026 A T PHLDB1 Missense_Mutation p.M931L 0.34 tolerated(0.18) benign(0) TCGA-DW-7840-01 11 315058 315058 C G IFITM1 Missense_Mutation p.S108C 0.29 tolerated(0.18) possibly_damaging(0.7) TCGA-DW-7840-01 11 407548 407548 A G SIGIRR Missense_Mutation p.Y168H 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-DW-7840-01 11 43905565 43905565 T C ALKBH3 Silent p.I72I 0.39 TCGA-DW-7840-01 11 6479061 6479061 C T TRIM3 Missense_Mutation p.C127Y 0.34 deleterious(0) possibly_damaging(0.903) TCGA-DW-7840-01 11 66613413 66613413 A C RCE1 Silent p.P279P 0.38 TCGA-DW-7840-01 11 66617140 66617141 - G PC Frame_Shift_Ins p.L1030Pfs*3 0.22 TCGA-DW-7840-01 11 66620716 66620716 A T PC Missense_Mutation p.Y503N 0.31 deleterious(0) probably_damaging(0.991) TCGA-DW-7840-01 12 110765478 110765478 C - ATP2A2 Frame_Shift_Del p.Q251Kfs*3 0.23 TCGA-DW-7840-01 12 12334248 12334248 C T LRP6 Missense_Mutation p.D368N 0.56 deleterious(0.01) probably_damaging(0.965) TCGA-DW-7840-01 12 7342955 7342955 C T PEX5 Intron 0.27 TCGA-DW-7840-01 12 81671123 81671123 G A PPFIA2 Missense_Mutation p.R1095W 0.59 deleterious(0) probably_damaging(0.999) TCGA-DW-7840-01 12 86199543 86199543 T C RASSF9 Missense_Mutation p.K82R 0.24 tolerated(0.18) possibly_damaging(0.873) TCGA-DW-7840-01 14 102906785 102906785 G T TECPR2 Missense_Mutation p.W864L 0.35 deleterious(0) probably_damaging(1) TCGA-DW-7840-01 14 102906786 102906786 G T TECPR2 Missense_Mutation p.W864C 0.35 deleterious(0) probably_damaging(1) TCGA-DW-7840-01 14 22409720 22409720 G A TRAV9-2 Silent p.T70T 0.39 TCGA-DW-7840-01 15 31362391 31362391 G T TRPM1 Missense_Mutation p.P58H 0.39 tolerated(0.54) possibly_damaging(0.76) TCGA-DW-7840-01 15 65223120 65223120 T G ANKDD1A Splice_Site p.X223_splice 0.40 TCGA-DW-7840-01 15 65684505 65684505 T A IGDCC4 Nonsense_Mutation p.K697* 0.39 TCGA-DW-7840-01 15 67985904 67985904 G T MAP2K5 Missense_Mutation p.A324S 0.32 tolerated(0.31) probably_damaging(1) TCGA-DW-7840-01 15 78485857 78485857 C G ACSBG1 Missense_Mutation p.K218N 0.42 deleterious(0.01) possibly_damaging(0.794) TCGA-DW-7840-01 15 79254568 79254568 T C RASGRF1 Missense_Mutation p.Y1247C 0.36 deleterious(0) probably_damaging(0.993) TCGA-DW-7840-01 16 2142548 2142548 G A PKD1 Silent p.Y3734Y 0.06 TCGA-DW-7840-01 16 89774204 89774204 G A VPS9D1 3'UTR 0.44 TCGA-DW-7840-01 17 10312636 10312636 A T MYH8 Silent p.T619T 0.53 TCGA-DW-7840-01 17 1248680 1248680 C T YWHAE 3'UTR 0.56 TCGA-DW-7840-01 17 7470323 7470323 G A SENP3 Splice_Site p.X447_splice 0.21 TCGA-DW-7840-01 19 11135092 11135092 A G SMARCA4 Missense_Mutation p.D1020G 0.34 possibly_damaging(0.877) TCGA-DW-7840-01 19 12541116 12541116 C T ZNF443 Missense_Mutation p.A624T 0.37 tolerated(0.07) benign(0.074) TCGA-DW-7840-01 19 50473279 50473279 A - SIGLEC16 RNA 0.27 TCGA-DW-7840-01 19 51955588 51955588 C A SIGLEC8 3'UTR 0.45 TCGA-DW-7840-01 19 58386399 58386399 T - ZNF814 Frame_Shift_Del p.H120Pfs*101 0.42 TCGA-DW-7840-01 19 6501326 6501326 C A TUBB4A Missense_Mutation p.Q83H 0.51 tolerated_low_confidence(0.08) benign(0.002) TCGA-DW-7840-01 19 7083599 7083599 T C ZNF557 Silent p.S379S 0.26 TCGA-DW-7840-01 19 758211 758211 C A MISP Missense_Mutation p.P422H 0.52 deleterious(0.02) probably_damaging(0.983) TCGA-DW-7840-01 1 110883658 110883658 C G RBM15 Missense_Mutation p.T544S 0.41 tolerated(0.58) benign(0.015) TCGA-DW-7840-01 1 167870956 167870956 T A ADCY10 Missense_Mutation p.H127L 0.36 deleterious(0.01) possibly_damaging(0.876) TCGA-DW-7840-01 1 206651658 206651658 A G IKBKE Missense_Mutation p.H323R 0.27 tolerated(0.6) benign(0.002) TCGA-DW-7840-01 1 210267875 210267875 T C SYT14 Silent p.S262S 0.38 TCGA-DW-7840-01 1 24147039 24147039 A C HMGCL Missense_Mutation p.I35M 0.36 deleterious(0.02) possibly_damaging(0.573) TCGA-DW-7840-01 1 28785697 28785697 T C PHACTR4 Missense_Mutation p.F50L 0.32 tolerated(0.5) probably_damaging(0.998) TCGA-DW-7840-01 1 31406096 31406096 A T PUM1 Missense_Mutation p.L1177I 0.37 deleterious(0.02) benign(0.298) TCGA-DW-7840-01 1 46782341 46782341 A G UQCRH 3'UTR 0.47 TCGA-DW-7840-01 1 62582269 62582269 T C INADL Missense_Mutation p.L1574S 0.42 deleterious(0) probably_damaging(0.997) TCGA-DW-7840-01 1 7721912 7721912 G C CAMTA1 Missense_Mutation p.C264S 0.35 deleterious(0.01) benign(0.156) TCGA-DW-7840-01 1 8424145 8424145 T A RERE Missense_Mutation p.S571C 0.41 probably_damaging(0.998) TCGA-DW-7840-01 1 93996339 93996339 C T FNBP1L Missense_Mutation p.H180Y 0.33 deleterious(0) possibly_damaging(0.869) TCGA-DW-7840-01 20 31374365 31374365 C G DNMT3B Missense_Mutation p.R122G 0.43 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-DW-7840-01 20 33851627 33851627 T C MMP24 Missense_Mutation p.L284P 0.47 deleterious(0) probably_damaging(1) TCGA-DW-7840-01 20 42089767 42089767 T C SRSF6 3'UTR 0.40 TCGA-DW-7840-01 20 42203603 42203603 T - SGK2 Frame_Shift_Del p.W278Gfs*78 0.29 TCGA-DW-7840-01 21 46117131 46117131 C T KRTAP10-12 Silent p.S5S 0.37 TCGA-DW-7840-01 21 47731374 47731374 C A C21orf58 Missense_Mutation p.K239N 0.44 deleterious(0) possibly_damaging(0.731) TCGA-DW-7840-01 22 29445939 29445939 C G ZNRF3 Silent p.L590L 0.36 TCGA-DW-7840-01 22 41574164 41574176 CACAGCAGCAACT - EP300 Frame_Shift_Del p.Q2151Sfs*7 0.40 TCGA-DW-7840-01 2 113820191 113820191 G - IL36RN Frame_Shift_Del p.Q135Hfs*37 0.25 TCGA-DW-7840-01 2 135891507 135891507 A G RAB3GAP1 Missense_Mutation p.N468S 0.36 deleterious(0.04) possibly_damaging(0.851) TCGA-DW-7840-01 2 218713668 218713668 C G TNS1 Silent p.T399T 0.40 TCGA-DW-7840-01 2 32422810 32422810 T A SLC30A6 Missense_Mutation p.F234I 0.39 deleterious(0.02) benign(0.059) TCGA-DW-7840-01 2 55470636 55470636 A G MTIF2 Missense_Mutation p.F494L 0.30 tolerated(0.07) benign(0.007) TCGA-DW-7840-01 2 61493234 61493234 C T USP34 Silent p.K1834K 0.41 TCGA-DW-7840-01 3 127396051 127396051 C A ABTB1 Silent p.I228I 0.47 TCGA-DW-7840-01 3 194379786 194379786 T G LSG1 Missense_Mutation p.E220A 0.36 tolerated(0.14) benign(0.097) TCGA-DW-7840-01 3 195782165 195782165 T A TFRC Missense_Mutation p.D562V 0.27 tolerated(0.12) benign(0.097) TCGA-DW-7840-01 3 38524865 38524866 - A ACVR2B 3'UTR 0.20 TCGA-DW-7840-01 4 104081805 104081805 C T CENPE Missense_Mutation p.E755K 0.44 probably_damaging(0.998) TCGA-DW-7840-01 4 151821345 151821345 G T LRBA Missense_Mutation p.L594M 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-DW-7840-01 4 184182067 184182067 T A WWC2 Missense_Mutation p.S431T 0.50 deleterious(0.02) probably_damaging(0.993) TCGA-DW-7840-01 4 76415883 76415883 A C RCHY1 Missense_Mutation p.S189A 0.32 deleterious(0) probably_damaging(0.999) TCGA-DW-7840-01 4 79786783 79786783 T C BMP2K Silent p.T380T 0.42 TCGA-DW-7840-01 5 101735268 101735268 G A SLCO6A1 Missense_Mutation p.A602V 0.06 tolerated(0.1) benign(0.076) TCGA-DW-7840-01 5 140605207 140605207 G C PCDHB14 Silent p.A710A 0.35 TCGA-DW-7840-01 5 157078648 157078648 C T SOX30 Missense_Mutation p.D147N 0.42 deleterious_low_confidence(0) benign(0.019) TCGA-DW-7840-01 5 159738975 159738975 G A CCNJL 5'UTR 0.38 TCGA-DW-7840-01 5 52211309 52211309 G T ITGA1 Missense_Mutation p.G625W 0.40 deleterious(0) probably_damaging(0.992) TCGA-DW-7840-01 5 5461992 5461992 A T KIAA0947 Missense_Mutation p.T849S 0.41 tolerated(0.16) benign(0.033) TCGA-DW-7840-01 5 77784725 77784725 G A LHFPL2 Missense_Mutation p.L228F 0.41 deleterious(0.04) benign(0.159) TCGA-DW-7840-01 6 106967843 106967843 T - AIM1 Frame_Shift_Del p.N512Kfs*7 0.31 TCGA-DW-7840-01 6 107827597 107827597 T - SOBP Frame_Shift_Del p.L130* 0.29 TCGA-DW-7840-01 6 11723657 11723657 C - ADTRP Frame_Shift_Del p.A213Lfs*28 0.29 TCGA-DW-7840-01 6 131958414 131958414 T A ENPP3 5'UTR 0.57 TCGA-DW-7840-01 6 161470014 161470014 C A MAP3K4 Nonsense_Mutation p.S237* 0.44 TCGA-DW-7840-01 6 32945538 32945538 T C BRD2 Missense_Mutation p.V445A 0.51 deleterious(0.01) probably_damaging(0.996) TCGA-DW-7840-01 6 43267444 43267444 T C SLC22A7 Missense_Mutation p.Y195H 0.36 deleterious(0) probably_damaging(0.982) TCGA-DW-7840-01 6 93969151 93969151 C A EPHA7 Missense_Mutation p.E615D 0.43 deleterious(0) benign(0.002) TCGA-DW-7840-01 7 100485469 100485473 GCCCC - SRRT Frame_Shift_Del p.A774Dfs*62 0.16 TCGA-DW-7840-01 7 111629106 111629106 T C DOCK4 Missense_Mutation p.K143R 0.18 tolerated(0.07) probably_damaging(0.985) TCGA-DW-7840-01 7 124404923 124404923 G C GPR37 Missense_Mutation p.N36K 0.69 deleterious_low_confidence(0.04) benign(0.003) TCGA-DW-7840-01 7 33134707 33134707 A G RP9 3'UTR 0.60 TCGA-DW-7840-01 7 47870900 47870900 G C PKD1L1 Missense_Mutation p.Q2130E 0.23 tolerated(0.62) benign(0.025) TCGA-DW-7840-01 7 72419166 72419166 G A POM121 3'UTR 0.20 TCGA-DW-7840-01 7 803456 803456 T G HEATR2 Missense_Mutation p.M543R 0.16 deleterious(0) benign(0.342) TCGA-DW-7840-01 7 94057039 94057039 G T COL1A2 Missense_Mutation p.R1123L 0.21 unknown(0) TCGA-DW-7840-01 8 12943266 12943266 A T DLC1 3'UTR 0.39 TCGA-DW-7840-01 9 134404931 134404931 G A UCK1 Silent p.N108N 0.44 TCGA-DW-7840-01 9 135156906 135156906 T C SETX Missense_Mutation p.K2201R 0.43 deleterious(0) probably_damaging(0.989) TCGA-DW-7840-01 9 135781374 135781374 C T TSC1 Missense_Mutation p.V531M 0.37 tolerated(0.11) benign(0.025) TCGA-DW-7840-01 X 125685498 125685498 A C DCAF12L1 Missense_Mutation p.V365G 0.84 deleterious(0) possibly_damaging(0.864) TCGA-DW-7840-01 X 19626146 19626146 G T SH3KBP1 Silent p.G305G 0.80 TCGA-DW-7840-01 X 30261230 30261230 C A MAGEB4 Silent p.G326G 0.14 TCGA-DW-7841-01 10 105793785 105793786 GC A COL17A1 Frame_Shift_Del p.G1358Vfs*21 0.14 TCGA-DW-7841-01 11 10011061 10011061 C T SBF2 Missense_Mutation p.E460K 0.23 tolerated(0.26) benign(0.034) TCGA-DW-7841-01 11 74880776 74880776 C A SLCO2B1 Missense_Mutation p.R250S 0.27 deleterious(0.05) benign(0.164) TCGA-DW-7841-01 12 57005874 57005874 G A BAZ2A Missense_Mutation p.T433I 0.75 tolerated(0.2) benign(0) TCGA-DW-7841-01 12 6932873 6932873 C T GPR162 5'UTR 0.57 TCGA-DW-7841-01 13 41767953 41767953 G A KBTBD7 Silent p.A147A 0.27 TCGA-DW-7841-01 13 61103190 61103190 G A TDRD3 Missense_Mutation p.A611T 0.38 tolerated(0.36) benign(0.004) TCGA-DW-7841-01 14 45650876 45650876 G A FANCM Missense_Mutation p.A1452T 0.26 tolerated(0.06) possibly_damaging(0.642) TCGA-DW-7841-01 14 55890942 55890942 A C TBPL2 Missense_Mutation p.I329S 0.29 deleterious(0.02) possibly_damaging(0.862) TCGA-DW-7841-01 14 63447722 63447722 G T KCNH5 Missense_Mutation p.F270L 0.45 deleterious(0.02) probably_damaging(0.994) TCGA-DW-7841-01 15 33603296 33603296 C T RYR3 Missense_Mutation p.T17I 0.36 possibly_damaging(0.566) TCGA-DW-7841-01 16 27519910 27519910 A G GTF3C1 Missense_Mutation p.L398P 0.30 deleterious(0) probably_damaging(0.999) TCGA-DW-7841-01 16 68867455 68867455 A C CDH1 3'UTR 0.29 TCGA-DW-7841-01 16 716291 716291 C A WDR90 Missense_Mutation p.R1561S 0.27 deleterious(0) possibly_damaging(0.765) TCGA-DW-7841-01 17 27052951 27052951 G T TLCD1 Silent p.S55S 0.36 TCGA-DW-7841-01 17 27380072 27380083 GGTTGCCCAGGG - PIPOX In_Frame_Del p.L134_G137del 0.32 TCGA-DW-7841-01 17 36003445 36003445 T C DDX52 Missense_Mutation p.D2G 0.19 deleterious(0) probably_damaging(0.963) TCGA-DW-7841-01 17 38933310 38933310 T C KRT27 Missense_Mutation p.T441A 0.20 tolerated(0.07) benign(0.002) TCGA-DW-7841-01 17 39296291 39296291 C A KRTAP4-6 Missense_Mutation p.C150F 0.09 deleterious(0) unknown(0) TCGA-DW-7841-01 17 4575082 4575082 C T PELP1 Silent p.E1068E 0.18 TCGA-DW-7841-01 17 74134123 74134123 C A FOXJ1 Missense_Mutation p.G193C 0.30 deleterious(0) probably_damaging(0.999) TCGA-DW-7841-01 17 7492754 7492754 T C SOX15 Missense_Mutation p.K81E 0.38 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DW-7841-01 17 7758402 7758402 G T TMEM88 Missense_Mutation p.V4F 0.26 tolerated(0.1) benign(0.05) TCGA-DW-7841-01 17 7758962 7758962 C A TMEM88 Missense_Mutation p.P137Q 0.07 tolerated(0.11) benign(0.033) TCGA-DW-7841-01 17 79514289 79514299 TGAGACTGTAG - C17orf70 Frame_Shift_Del p.F603Lfs*14 0.48 TCGA-DW-7841-01 17 79632531 79632531 C T OXLD1 Silent p.A48A 0.20 TCGA-DW-7841-01 18 22040669 22040669 T C HRH4 5'UTR 0.26 TCGA-DW-7841-01 19 19976752 19976752 C T ZNF253 5'UTR 0.28 TCGA-DW-7841-01 19 23159778 23159778 C G ZNF728 Missense_Mutation p.D121H 0.10 deleterious(0.02) probably_damaging(0.912) TCGA-DW-7841-01 19 48551593 48551593 G C PLA2G4C 3'UTR 0.24 TCGA-DW-7841-01 19 58867603 58867603 C A ZNF497 Nonsense_Mutation p.E467* 0.33 TCGA-DW-7841-01 19 8551158 8551158 G A HNRNPM Missense_Mutation p.G616S 0.36 tolerated(0.09) benign(0.182) TCGA-DW-7841-01 1 209800244 209800244 C T LAMB3 Missense_Mutation p.R522Q 0.22 tolerated(0.24) benign(0.168) TCGA-DW-7841-01 1 8075357 8075374 AGAATACATACCAAGTGG - ERRFI1 Splice_Site p.X66_splice 0.22 TCGA-DW-7841-01 1 85648788 85648788 T C SYDE2 Missense_Mutation p.N513D 0.06 deleterious(0) possibly_damaging(0.493) TCGA-DW-7841-01 20 56090837 56090837 C G CTCFL Missense_Mutation p.Q371H 0.47 tolerated(0.12) benign(0.134) TCGA-DW-7841-01 21 44185564 44185565 - G PDE9A Frame_Shift_Ins p.E440Gfs*4 0.29 TCGA-DW-7841-01 22 18293564 18293564 C T MICAL3 Missense_Mutation p.E1821K 0.23 probably_damaging(0.99) TCGA-DW-7841-01 22 30805476 30805477 - T SEC14L2 Splice_Site p.X194_splice 0.22 TCGA-DW-7841-01 22 42154472 42154472 A C MEI1 Silent p.G685G 0.34 TCGA-DW-7841-01 22 43010826 43010826 C T POLDIP3 Missense_Mutation p.R13H 0.22 deleterious(0) probably_damaging(0.993) TCGA-DW-7841-01 22 43533107 43533107 C T MCAT Missense_Mutation p.V237M 0.25 deleterious(0) probably_damaging(0.998) TCGA-DW-7841-01 2 148684830 148684834 AATCT - ACVR2A Frame_Shift_Del p.S512Mfs*21 0.29 TCGA-DW-7841-01 2 167284362 167284362 A T SCN7A Missense_Mutation p.I930N 0.33 deleterious(0) probably_damaging(1) TCGA-DW-7841-01 2 44207047 44207047 A G LRPPRC Silent p.S129S 0.30 TCGA-DW-7841-01 3 112282282 112282290 TATGCTCCT - SLC35A5 In_Frame_Del p.I11_L14delinsM 0.27 TCGA-DW-7841-01 3 160249310 160249310 T C KPNA4 Missense_Mutation p.D108G 0.23 deleterious(0.02) probably_damaging(0.976) TCGA-DW-7841-01 3 48510782 48510782 C T SHISA5 Silent p.P207P 0.20 TCGA-DW-7841-01 4 42037333 42037333 T G SLC30A9 Missense_Mutation p.F218V 0.24 tolerated(0.49) benign(0.082) TCGA-DW-7841-01 5 140753888 140753888 C T PCDHGA6 Nonsense_Mutation p.R80* 0.35 TCGA-DW-7841-01 5 159520919 159520919 G A PWWP2A Silent p.V246V 0.30 TCGA-DW-7841-01 5 80600585 80600585 G A ZCCHC9 Silent p.R3R 0.27 TCGA-DW-7841-01 6 138200108 138200108 C T TNFAIP3 Missense_Mutation p.A509V 0.22 tolerated(0.32) benign(0.001) TCGA-DW-7841-01 6 35436591 35436591 C T RPL10A Silent p.R7R 0.21 TCGA-DW-7841-01 8 101932785 101932785 A G YWHAZ 3'UTR 0.27 TCGA-DW-7841-01 8 124787418 124787418 C A FAM91A1 Nonsense_Mutation p.Y63* 0.43 TCGA-DW-7841-01 8 38880710 38880711 - GG ADAM9 Frame_Shift_Ins p.L262Dfs*10 0.29 TCGA-DW-7841-01 9 114820886 114820888 CTA TT SUSD1 Frame_Shift_Del p.F643Lfs*29 0.22 TCGA-DW-7841-01 9 116132384 116132384 T A BSPRY Missense_Mutation p.F391I 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-DW-7842-01 10 17276732 17276732 C G VIM Missense_Mutation p.A308G 0.15 deleterious(0.02) possibly_damaging(0.897) TCGA-DW-7842-01 10 24885703 24885704 - G ARHGAP21 Frame_Shift_Ins p.R1148Pfs*4 0.31 TCGA-DW-7842-01 11 134115448 134115448 C T VPS26B Silent p.T325T 0.55 TCGA-DW-7842-01 11 47074069 47074069 G T C11orf49 Missense_Mutation p.D94Y 0.44 deleterious(0) probably_damaging(0.984) TCGA-DW-7842-01 11 61732149 61732149 T C FTH1 3'UTR 0.65 TCGA-DW-7842-01 11 73020470 73020470 G A ARHGEF17 Missense_Mutation p.G263R 0.51 tolerated_low_confidence(0.07) benign(0.008) TCGA-DW-7842-01 11 76890090 76890090 G T MYO7A Splice_Site p.X761_splice 0.56 TCGA-DW-7842-01 11 93542943 93542943 C A MED17 Missense_Mutation p.L549M 0.44 deleterious(0.05) probably_damaging(0.988) TCGA-DW-7842-01 12 48080648 48080648 C T RPAP3 Missense_Mutation p.E303K 0.55 deleterious(0.01) benign(0.116) TCGA-DW-7842-01 14 52734893 52734893 C A PTGDR Missense_Mutation p.L121M 0.35 tolerated(0.05) possibly_damaging(0.725) TCGA-DW-7842-01 14 52734894 52734894 T G PTGDR Missense_Mutation p.L121R 0.34 deleterious(0) probably_damaging(0.984) TCGA-DW-7842-01 15 42442584 42442584 A G PLA2G4F Missense_Mutation p.V291A 0.56 deleterious(0.01) possibly_damaging(0.611) TCGA-DW-7842-01 15 90129030 90129030 G A TICRR Missense_Mutation p.R423H 0.08 tolerated(0.63) benign(0.02) TCGA-DW-7842-01 17 18967236 18967236 A G SNORD3B-2 RNA 0.10 TCGA-DW-7842-01 17 45727756 45727756 G A KPNB1 Silent p.R15R 0.08 TCGA-DW-7842-01 18 28980927 28980927 A T DSG4 Missense_Mutation p.K454M 0.47 deleterious(0.03) benign(0.046) TCGA-DW-7842-01 19 35614428 35614428 A T FXYD3 3'UTR 0.41 TCGA-DW-7842-01 19 56511120 56511120 G A NLRP5 Missense_Mutation p.G10E 0.14 tolerated_low_confidence(0.31) unknown(0) TCGA-DW-7842-01 19 992048 992048 A G WDR18 Missense_Mutation p.H342R 0.61 deleterious(0.05) possibly_damaging(0.691) TCGA-DW-7842-01 1 160181403 160181403 C A PEA15 Silent p.L23L 0.15 TCGA-DW-7842-01 1 47882415 47882415 A C FOXE3 Missense_Mutation p.N143T 0.30 deleterious(0) probably_damaging(0.982) TCGA-DW-7842-01 2 234173559 234173559 T C ATG16L1 Silent p.T137T 0.35 TCGA-DW-7842-01 2 95941238 95941238 G A PROM2 Missense_Mutation p.A92T 0.33 deleterious(0.02) possibly_damaging(0.622) TCGA-DW-7842-01 7 111368503 111368503 G C DOCK4 Missense_Mutation p.L1910V 0.05 tolerated_low_confidence(0.51) benign(0.107) TCGA-DW-7842-01 7 151805279 151805279 T C GALNT11 Missense_Mutation p.V290A 0.73 deleterious(0) probably_damaging(0.999) TCGA-DW-7842-01 8 2063780 2063780 C T MYOM2 Missense_Mutation p.T1070I 0.43 deleterious(0) possibly_damaging(0.697) TCGA-DW-7842-01 9 100117239 100117239 A G CCDC180 Missense_Mutation p.I1115M 0.45 tolerated(0.82) possibly_damaging(0.506) TCGA-DW-7842-01 9 114429094 114429094 G A DNAJC25-GNG10 Splice_Site p.X113_splice 0.33 TCGA-DW-7842-01 9 33255090 33255090 A G BAG1 3'UTR 0.36 TCGA-DW-7963-01 10 26506915 26506915 C T GAD2 Missense_Mutation p.A94V 0.29 deleterious(0.04) benign(0.003) TCGA-DW-7963-01 10 32326205 32326205 C A KIF5B Missense_Mutation p.V230F 0.12 deleterious(0) probably_damaging(0.999) TCGA-DW-7963-01 10 49983779 49983779 C T WDFY4 Missense_Mutation p.P931S 0.31 tolerated(0.06) benign(0.012) TCGA-DW-7963-01 11 4104179 4104179 T G STIM1 Missense_Mutation p.L402R 0.31 deleterious(0) probably_damaging(0.998) TCGA-DW-7963-01 12 65152878 65152878 A T GNS Missense_Mutation p.V60E 0.21 tolerated(0.53) benign(0.005) TCGA-DW-7963-01 12 88471486 88471486 G T CEP290 Silent p.T1858T 0.19 TCGA-DW-7963-01 14 107083541 107083541 C T IGHV4-59 Silent p.V21V 0.12 TCGA-DW-7963-01 14 31576342 31576342 G A HECTD1 Missense_Mutation p.H2246Y 0.23 tolerated(0.97) benign(0.002) TCGA-DW-7963-01 15 90174782 90174782 T G KIF7 Missense_Mutation p.K1019Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-DW-7963-01 16 85010785 85010785 G A ZDHHC7 Silent p.F259F 0.21 TCGA-DW-7963-01 16 89986901 89986901 C G MC1R 3'UTR 0.33 TCGA-DW-7963-01 17 10293668 10293668 T G MYH8 3'UTR 0.41 TCGA-DW-7963-01 1 216262462 216262462 G T USH2A Missense_Mutation p.T1593N 0.32 probably_damaging(0.993) TCGA-DW-7963-01 1 237730023 237730023 C G RYR2 Missense_Mutation p.P1124R 0.25 probably_damaging(0.991) TCGA-DW-7963-01 1 53362195 53362195 T C ECHDC2 Silent p.K292K 0.27 TCGA-DW-7963-01 1 55250459 55250459 G T TTC22 Intron 0.33 TCGA-DW-7963-01 20 31389169 31389169 G C DNMT3B Missense_Mutation p.W694C 0.28 deleterious(0) probably_damaging(1) TCGA-DW-7963-01 20 42162966 42162966 G A L3MBTL1 Missense_Mutation p.V526M 0.24 deleterious(0) probably_damaging(0.999) TCGA-DW-7963-01 21 37642372 37642372 C T DOPEY2 Missense_Mutation p.T1850I 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-DW-7963-01 22 18835074 18835074 G A AC008132.13 Silent p.G210G 0.23 TCGA-DW-7963-01 22 50279802 50279802 C T ZBED4 Missense_Mutation p.T831M 0.33 deleterious(0.01) benign(0.426) TCGA-DW-7963-01 2 42990999 42990999 C A OXER1 Silent p.L107L 0.33 TCGA-DW-7963-01 3 125298795 125298795 A T OSBPL11 Missense_Mutation p.L108H 0.19 deleterious(0) probably_damaging(1) TCGA-DW-7963-01 3 130464067 130464067 G A PIK3R4 5'UTR 0.27 TCGA-DW-7963-01 3 132418235 132418235 A T NPHP3 Silent p.I649I 0.36 TCGA-DW-7963-01 5 176833055 176833058 AGTG - F12 Frame_Shift_Del p.T41Sfs*53 0.38 TCGA-DW-7963-01 6 111701285 111701285 C A REV3L Nonsense_Mutation p.E452* 0.32 TCGA-DW-7963-01 7 99707631 99707631 G A TAF6 Silent p.D445D 0.23 TCGA-DW-7963-01 8 27099960 27099960 G A STMN4 Silent p.S21S 0.31 TCGA-DW-7963-01 9 117143567 117143567 C A AKNA Missense_Mutation p.G16V 0.29 deleterious(0) probably_damaging(1) TCGA-DZ-6131-01 10 1170912 1170915 TGTT - WDR37 Frame_Shift_Del p.F435Ifs*66 0.12 TCGA-DZ-6131-01 11 1099777 1099777 T C MUC2 Silent p.P2458P 0.37 TCGA-DZ-6131-01 12 64174892 64174892 T G TMEM5 Nonsense_Mutation p.L88* 0.35 TCGA-DZ-6131-01 12 69666999 69666999 T A CPSF6 3'UTR 0.39 TCGA-DZ-6131-01 12 80203769 80203769 T G PPP1R12A Missense_Mutation p.I421L 0.29 tolerated(1) benign(0.004) TCGA-DZ-6131-01 12 9000291 9000291 C T A2ML1 Silent p.R610R 0.07 TCGA-DZ-6131-01 13 53422307 53422307 C T PCDH8 Missense_Mutation p.G89S 0.37 tolerated_low_confidence(0.28) benign(0.409) TCGA-DZ-6131-01 15 23890238 23890238 C G MAGEL2 Missense_Mutation p.K281N 0.11 deleterious(0) probably_damaging(0.997) TCGA-DZ-6131-01 16 4700468 4700468 G T MGRN1 Missense_Mutation p.G64V 0.32 deleterious(0) probably_damaging(0.982) TCGA-DZ-6131-01 16 66612903 66612903 G A CMTM1 Silent p.%3D 0.39 TCGA-DZ-6131-01 17 46862380 46862380 T G TTLL6 Missense_Mutation p.N649H 0.40 tolerated(0.19) benign(0.005) TCGA-DZ-6131-01 19 39998821 39998821 T C DLL3 3'UTR 0.33 TCGA-DZ-6131-01 1 120436921 120436921 C T ADAM30 Missense_Mutation p.G680E 0.31 tolerated(1) benign(0.001) TCGA-DZ-6131-01 1 159033450 159033450 C G AIM2 Missense_Mutation p.K277N 0.30 tolerated(0.26) benign(0.335) TCGA-DZ-6131-01 1 182356292 182356292 A T GLUL Missense_Mutation p.V101D 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-DZ-6131-01 1 31836979 31836979 A C ZCCHC17 Missense_Mutation p.D222A 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.857) TCGA-DZ-6131-01 21 34877874 34877874 A C GART Missense_Mutation p.W907G 0.05 deleterious(0) probably_damaging(1) TCGA-DZ-6131-01 21 43413770 43413770 T C ZBTB21 Silent p.Q145Q 0.41 TCGA-DZ-6131-01 21 46057373 46057373 C T KRTAP10-10 Silent p.C13C 0.19 TCGA-DZ-6131-01 2 207171574 207171574 G A ZDBF2 Silent p.R774R 0.16 TCGA-DZ-6131-01 2 215865517 215865517 C G ABCA12 Missense_Mutation p.A1031P 0.35 deleterious(0) probably_damaging(1) TCGA-DZ-6131-01 2 55473595 55473595 G A MTIF2 Silent p.G328G 0.12 TCGA-DZ-6131-01 4 100787246 100787246 G C DAPP1 Missense_Mutation p.D248H 0.22 deleterious(0) probably_damaging(0.988) TCGA-DZ-6131-01 4 174225146 174225146 G A GALNT7 Splice_Site p.X423_splice 0.32 TCGA-DZ-6131-01 4 87691259 87691259 C T PTPN13 Silent p.V1575V 0.26 TCGA-DZ-6131-01 5 159781881 159781881 G A C1QTNF2 Silent p.G91G 0.41 TCGA-DZ-6131-01 5 33984733 33984733 G T SLC45A2 5'UTR 0.26 TCGA-DZ-6131-01 5 94922371 94922371 A G ARSK Missense_Mutation p.K269E 0.22 tolerated(1) benign(0.004) TCGA-DZ-6131-01 7 111368620 111368620 C T DOCK4 Missense_Mutation p.E1871K 0.08 tolerated_low_confidence(0.07) benign(0.033) TCGA-DZ-6131-01 7 21856097 21856097 C A DNAH11 Missense_Mutation p.L3456I 0.40 benign(0.011) TCGA-DZ-6131-01 8 30694449 30694449 T C TEX15 Silent p.Q2734Q 0.39 TCGA-DZ-6131-01 9 114454268 114454270 CTC - C9orf84 In_Frame_Del p.R1266del 0.17 TCGA-DZ-6131-01 X 34961454 34961454 G A FAM47B Missense_Mutation p.R169Q 0.82 tolerated(0.38) benign(0.005) TCGA-DZ-6131-01 X 53268433 53268433 C G IQSEC2 Missense_Mutation p.S1020T 0.81 tolerated(0.34) benign(0.012) TCGA-DZ-6132-01 10 24908604 24908604 T - ARHGAP21 Frame_Shift_Del p.K740Nfs*12 0.17 TCGA-DZ-6132-01 10 70645179 70645179 T - STOX1 Frame_Shift_Del p.F543Lfs*24 0.21 TCGA-DZ-6132-01 10 85997318 85997318 C T LRIT1 Missense_Mutation p.G83S 0.20 tolerated(0.65) benign(0.009) TCGA-DZ-6132-01 10 93600315 93600315 C T TNKS2 Intron 0.18 TCGA-DZ-6132-01 11 117052793 117052793 G A SIDT2 Missense_Mutation p.S163N 0.24 tolerated(0.47) benign(0.01) TCGA-DZ-6132-01 11 120302543 120302543 A T ARHGEF12 Missense_Mutation p.T283S 0.10 tolerated(0.35) benign(0.001) TCGA-DZ-6132-01 11 47469615 47469615 C A RAPSN Nonsense_Mutation p.E94* 0.21 TCGA-DZ-6132-01 11 59610051 59610052 - G GIF Frame_Shift_Ins p.N126Qfs*3 0.16 TCGA-DZ-6132-01 11 61578255 61578255 A C FADS1 Missense_Mutation p.F295V 0.18 tolerated(0.29) benign(0.288) TCGA-DZ-6132-01 11 9519250 9519250 T G ZNF143 Silent p.T290T 0.16 TCGA-DZ-6132-01 12 10780290 10780290 G C STYK1 Missense_Mutation p.L223V 0.32 deleterious(0) possibly_damaging(0.641) TCGA-DZ-6132-01 12 12232370 12232370 C T BCL2L14 Missense_Mutation p.S44L 0.12 tolerated(0.21) probably_damaging(0.998) TCGA-DZ-6132-01 12 19506893 19506893 A G PLEKHA5 Missense_Mutation p.Y1032C 0.22 deleterious(0.01) possibly_damaging(0.896) TCGA-DZ-6132-01 12 2910312 2910312 G T FKBP4 Missense_Mutation p.K354N 0.27 deleterious(0) probably_damaging(1) TCGA-DZ-6132-01 12 47178364 47178364 T A SLC38A4 Missense_Mutation p.I152F 0.15 tolerated(0.1) benign(0.008) TCGA-DZ-6132-01 12 53416313 53416313 G C EIF4B Missense_Mutation p.R190P 0.14 deleterious(0.01) possibly_damaging(0.453) TCGA-DZ-6132-01 12 56385887 56385887 A T RAB5B Missense_Mutation p.K180M 0.28 deleterious(0) possibly_damaging(0.84) TCGA-DZ-6132-01 12 66765625 66765625 A - GRIP1 Frame_Shift_Del p.F902Sfs*29 0.16 TCGA-DZ-6132-01 12 96273432 96273432 G A CCDC38 Nonsense_Mutation p.Q378* 0.19 TCGA-DZ-6132-01 13 103492131 103492131 C G BIVM-ERCC5 Missense_Mutation p.D448E 0.17 tolerated(0.91) possibly_damaging(0.866) TCGA-DZ-6132-01 13 19755906 19755906 C T TUBA3C 5'UTR 0.17 TCGA-DZ-6132-01 13 38237841 38237841 G T TRPC4 Nonsense_Mutation p.S467* 0.19 TCGA-DZ-6132-01 13 39585341 39585342 - AAA PROSER1 3'UTR 0.24 TCGA-DZ-6132-01 13 50115836 50115837 CG A RCBTB1 Frame_Shift_Del p.D434Tfs*8 0.20 TCGA-DZ-6132-01 13 95271585 95271585 G A GPR180 Splice_Site p.X229_splice 0.10 TCGA-DZ-6132-01 14 56079010 56079010 C A KTN1 Silent p.R82R 0.20 TCGA-DZ-6132-01 15 90349567 90349567 T C ANPEP Missense_Mutation p.D83G 0.19 tolerated(0.33) benign(0.158) TCGA-DZ-6132-01 15 91769497 91769497 G C SV2B Missense_Mutation p.D2H 0.31 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-DZ-6132-01 16 24582943 24582943 G C RBBP6 Missense_Mutation p.R1519T 0.18 deleterious_low_confidence(0) unknown(0) TCGA-DZ-6132-01 16 53691402 53691402 A G RPGRIP1L Missense_Mutation p.M515T 0.19 deleterious(0) probably_damaging(0.917) TCGA-DZ-6132-01 17 18422906 18422906 A T FAM106A 3'Flank 0.26 TCGA-DZ-6132-01 17 29261211 29261211 G - ADAP2 Frame_Shift_Del p.E136Kfs*15 0.17 TCGA-DZ-6132-01 17 33966737 33966737 A C AP2B1 Missense_Mutation p.L465F 0.23 deleterious(0.01) benign(0.279) TCGA-DZ-6132-01 17 39847153 39847153 A G EIF1 3'UTR 0.22 TCGA-DZ-6132-01 17 46152378 46152378 G A CBX1 Silent p.L135L 0.22 TCGA-DZ-6132-01 17 56572475 56572475 C T MTMR4 Missense_Mutation p.D1010N 0.28 deleterious(0) probably_damaging(0.999) TCGA-DZ-6132-01 17 57771125 57771125 T C CLTC Missense_Mutation p.V1647A 0.39 tolerated(0.59) benign(0) TCGA-DZ-6132-01 17 59945081 59945082 - GAA INTS2 In_Frame_Ins p.L1150dup 0.23 TCGA-DZ-6132-01 17 61570904 61570904 G T ACE Missense_Mutation p.R1007M 0.22 deleterious(0) probably_damaging(1) TCGA-DZ-6132-01 17 76133812 76133812 C T TMC8 Silent p.S422S 0.13 TCGA-DZ-6132-01 17 79082274 79082274 G - BAIAP2 Splice_Site p.X501_splice 0.17 TCGA-DZ-6132-01 18 46956680 46956680 T G DYM Missense_Mutation p.N29H 0.17 deleterious(0) probably_damaging(0.997) TCGA-DZ-6132-01 18 61562567 61562567 G T SERPINB2 Missense_Mutation p.G80W 0.17 deleterious(0.02) possibly_damaging(0.494) TCGA-DZ-6132-01 18 67992496 67992496 A - SOCS6 Frame_Shift_Del p.N198Mfs*30 0.20 TCGA-DZ-6132-01 19 10402464 10402464 C A ICAM5 Missense_Mutation p.P218T 0.14 tolerated(0.05) benign(0.012) TCGA-DZ-6132-01 19 18274091 18274091 G A PIK3R2 Missense_Mutation p.D437N 0.17 tolerated(0.11) benign(0.007) TCGA-DZ-6132-01 19 21132080 21132080 G A ZNF85 Missense_Mutation p.G254R 0.25 tolerated(0.1) possibly_damaging(0.589) TCGA-DZ-6132-01 19 21132138 21132138 T C ZNF85 Missense_Mutation p.L273P 0.14 deleterious(0.01) probably_damaging(1) TCGA-DZ-6132-01 19 35617765 35617765 T A LGI4 Missense_Mutation p.E262V 0.14 tolerated(0.1) benign(0.109) TCGA-DZ-6132-01 19 39663942 39663943 GC A PAK4 Frame_Shift_Del p.A197Rfs*172 0.13 TCGA-DZ-6132-01 19 39964723 39964723 C A SUPT5H Missense_Mutation p.N871K 0.14 tolerated(0.44) benign(0.326) TCGA-DZ-6132-01 19 40095901 40095901 G T LGALS13 Missense_Mutation p.G59V 0.17 deleterious(0) probably_damaging(0.998) TCGA-DZ-6132-01 19 42907053 42907053 G A LIPE Silent p.T891T 0.25 TCGA-DZ-6132-01 19 44570872 44570872 C T ZNF223 Silent p.F297F 0.14 TCGA-DZ-6132-01 19 50017313 50017313 A G FCGRT Missense_Mutation p.Y83C 0.39 deleterious(0) probably_damaging(1) TCGA-DZ-6132-01 19 50549983 50549983 G C ZNF473 Missense_Mutation p.Q761H 0.25 deleterious(0.04) possibly_damaging(0.522) TCGA-DZ-6132-01 19 53046525 53046525 T A ZNF808 5'UTR 0.17 TCGA-DZ-6132-01 19 54937848 54937848 A G TTYH1 Splice_Site p.X213_splice 0.18 TCGA-DZ-6132-01 19 55324637 55324637 C T KIR2DL4 Intron 0.41 TCGA-DZ-6132-01 19 9406673 9406673 G C ZNF699 Missense_Mutation p.H469Q 0.15 deleterious(0.01) probably_damaging(0.967) TCGA-DZ-6132-01 1 110233169 110233169 T G GSTM1 Missense_Mutation p.F184V 0.34 deleterious(0) probably_damaging(0.925) TCGA-DZ-6132-01 1 156821562 156821562 G A INSRR Silent p.C320C 0.11 TCGA-DZ-6132-01 1 160105252 160105252 G A ATP1A2 Missense_Mutation p.G715E 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-DZ-6132-01 1 161134645 161134645 T A USP21 Missense_Mutation p.S469T 0.19 tolerated(0.92) benign(0.019) TCGA-DZ-6132-01 1 169101982 169101985 TCTA CCT NME7 3'UTR 0.24 TCGA-DZ-6132-01 1 169102046 169102046 A G NME7 Missense_Mutation p.F370L 0.09 deleterious(0.01) benign(0.247) TCGA-DZ-6132-01 1 203036824 203036824 A G PPFIA4 Missense_Mutation p.T512A 0.12 tolerated(0.26) benign(0.002) TCGA-DZ-6132-01 1 21902288 21902288 G A ALPL Missense_Mutation p.E354K 0.13 tolerated(0.55) possibly_damaging(0.85) TCGA-DZ-6132-01 1 27739179 27739179 A G WASF2 Silent p.C237C 0.16 TCGA-DZ-6132-01 1 39888512 39888512 C T MACF1 Silent p.A3301A 0.09 TCGA-DZ-6132-01 1 44078461 44078461 G C PTPRF Intron 0.14 TCGA-DZ-6132-01 1 44078466 44078466 C G PTPRF Intron 0.11 TCGA-DZ-6132-01 1 45813333 45813333 G A TESK2 Missense_Mutation p.S219F 0.21 deleterious(0) probably_damaging(1) TCGA-DZ-6132-01 1 46159260 46159260 A G TMEM69 Missense_Mutation p.I143V 0.17 tolerated(0.88) benign(0.003) TCGA-DZ-6132-01 1 52704507 52704507 A G ZFYVE9 Missense_Mutation p.Y473C 0.17 deleterious_low_confidence(0.01) benign(0.006) TCGA-DZ-6132-01 1 53262039 53262039 T C ZYG11B Silent p.A470A 0.14 TCGA-DZ-6132-01 1 86851227 86851227 G A ODF2L Missense_Mutation p.L54F 0.22 tolerated(0.27) benign(0.024) TCGA-DZ-6132-01 1 9097752 9097752 T C SLC2A5 Missense_Mutation p.T467A 0.16 deleterious(0) possibly_damaging(0.9) TCGA-DZ-6132-01 1 94522330 94522330 A G ABCA4 Silent p.L737L 0.23 TCGA-DZ-6132-01 1 94639942 94639942 A G ARHGAP29 Missense_Mutation p.L1090P 0.17 tolerated(0.23) benign(0.003) TCGA-DZ-6132-01 20 47741019 47741019 T A STAU1 Nonsense_Mutation p.K239* 0.29 TCGA-DZ-6132-01 21 41496201 41496201 A T DSCAM Missense_Mutation p.F1206Y 0.16 tolerated(0.13) benign(0.005) TCGA-DZ-6132-01 21 41496202 41496202 A G DSCAM Missense_Mutation p.F1206L 0.16 tolerated(0.25) benign(0.009) TCGA-DZ-6132-01 22 23523615 23523616 - A BCR Frame_Shift_Ins p.N157Kfs*111 0.23 TCGA-DZ-6132-01 22 43528975 43528976 - G MCAT 3'UTR 0.29 TCGA-DZ-6132-01 2 112608404 112608404 A G ANAPC1 Silent p.D533D 0.22 TCGA-DZ-6132-01 2 141762906 141762906 G T LRP1B Missense_Mutation p.T834K 0.20 benign(0.403) TCGA-DZ-6132-01 2 163074641 163074641 A T FAP Missense_Mutation p.L206H 0.14 deleterious(0) probably_damaging(0.995) TCGA-DZ-6132-01 2 218678433 218678433 T A TNS1 Silent p.P1508P 0.12 TCGA-DZ-6132-01 2 220047044 220047044 T C FAM134A Missense_Mutation p.L442P 0.21 tolerated(0.09) benign(0.011) TCGA-DZ-6132-01 2 220370077 220370077 T C GMPPA Missense_Mutation p.S250P 0.17 deleterious(0.01) benign(0.033) TCGA-DZ-6132-01 3 101401697 101401698 - A RPL24 Frame_Shift_Ins p.T83Yfs*7 0.25 TCGA-DZ-6132-01 3 101540473 101540473 C G NXPE3 Missense_Mutation p.P452R 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-DZ-6132-01 3 108107907 108107918 TTCCAGTTCACG - MYH15 In_Frame_Del p.R1832_E1835del 0.20 TCGA-DZ-6132-01 3 121260288 121260288 G A POLQ Missense_Mutation p.L128F 0.17 deleterious(0.01) probably_damaging(1) TCGA-DZ-6132-01 3 122978380 122978380 G - SEC22A Frame_Shift_Del p.D223Mfs*36 0.11 TCGA-DZ-6132-01 3 132207161 132207161 C A DNAJC13 Missense_Mutation p.P1096H 0.19 deleterious(0) probably_damaging(0.996) TCGA-DZ-6132-01 3 142284995 142284995 C T ATR Missense_Mutation p.S87N 0.20 tolerated_low_confidence(0.64) benign(0) TCGA-DZ-6132-01 3 170201153 170201154 - A SLC7A14 Frame_Shift_Ins p.M357Dfs*11 0.09 TCGA-DZ-6132-01 3 32169609 32169609 A C GPD1L Missense_Mutation p.K30T 0.20 tolerated(0.09) benign(0.01) TCGA-DZ-6132-01 3 38051199 38051201 TCG - PLCD1 In_Frame_Del p.D484del 0.21 TCGA-DZ-6132-01 3 9801228 9801228 T C CAMK1 Missense_Mutation p.I286V 0.21 deleterious(0.02) probably_damaging(0.947) TCGA-DZ-6132-01 4 114195785 114195785 G - ANK2 Frame_Shift_Del p.A555Pfs*4 0.16 TCGA-DZ-6132-01 4 154557454 154557454 C T KIAA0922 Missense_Mutation p.P1520L 0.11 deleterious(0) probably_damaging(0.925) TCGA-DZ-6132-01 4 159756556 159756556 G A FNIP2 Splice_Site p.X219_splice 0.19 TCGA-DZ-6132-01 4 40122682 40122682 C G N4BP2 Missense_Mutation p.P984R 0.14 deleterious(0.04) possibly_damaging(0.58) TCGA-DZ-6132-01 4 69962212 69962212 G A UGT2B7 5'UTR 0.16 TCGA-DZ-6132-01 4 83557889 83557889 G C SCD5 Silent p.S219S 0.21 TCGA-DZ-6132-01 4 88584223 88584223 G A DMP1 Silent p.E431E 0.20 TCGA-DZ-6132-01 4 89034494 89034494 G C ABCG2 Missense_Mutation p.F385L 0.17 tolerated(0.12) benign(0.02) TCGA-DZ-6132-01 5 140864817 140864817 A G PCDHGC4 Missense_Mutation p.Y26C 0.16 tolerated(0.2) benign(0.002) TCGA-DZ-6132-01 5 150027927 150027927 A - SYNPO Frame_Shift_Del p.K275Rfs*7 0.25 TCGA-DZ-6132-01 5 38489203 38489203 G A LIFR Missense_Mutation p.S771F 0.23 tolerated(0.08) benign(0.019) TCGA-DZ-6132-01 5 59064392 59064392 T C PDE4D Intron 0.26 TCGA-DZ-6132-01 5 70837317 70837317 A T BDP1 Missense_Mutation p.D2020V 0.17 deleterious(0) probably_damaging(0.925) TCGA-DZ-6132-01 6 29079815 29079815 A G OR2J3 Missense_Mutation p.I50V 0.19 tolerated(0.24) benign(0.011) TCGA-DZ-6132-01 6 33284668 33284668 C T ZBTB22 Missense_Mutation p.S9N 0.22 tolerated_low_confidence(0.09) unknown(0) TCGA-DZ-6132-01 6 42559909 42559909 C G UBR2 Missense_Mutation p.T120S 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-DZ-6132-01 6 44222677 44222677 G C SLC35B2 Missense_Mutation p.I355M 0.19 deleterious(0) probably_damaging(0.998) TCGA-DZ-6132-01 6 83728805 83728805 G T UBE3D Silent p.S299S 0.15 TCGA-DZ-6132-01 7 100732355 100732355 T C TRIM56 Missense_Mutation p.S588P 0.26 tolerated(0.06) benign(0.265) TCGA-DZ-6132-01 7 107542828 107542828 T C DLD Missense_Mutation p.I86T 0.33 deleterious(0) probably_damaging(0.993) TCGA-DZ-6132-01 7 116417457 116417457 G A MET Missense_Mutation p.V1110I 0.11 deleterious(0) probably_damaging(0.984) TCGA-DZ-6132-01 7 129856318 129856318 C A SSMEM1 3'UTR 0.25 TCGA-DZ-6132-01 7 23313792 23313792 C G GPNMB Missense_Mutation p.N556K 0.15 deleterious(0.01) benign(0.012) TCGA-DZ-6132-01 7 2691878 2691878 T C TTYH3 Splice_Site p.X309_splice 0.11 TCGA-DZ-6132-01 7 65705725 65705725 C A TPST1 Missense_Mutation p.P105T 0.39 deleterious(0) probably_damaging(1) TCGA-DZ-6132-01 7 73474279 73474279 C T ELN Missense_Mutation p.P493L 0.36 unknown(0) TCGA-DZ-6132-01 7 99690937 99690937 C A MCM7 Nonsense_Mutation p.G646* 0.10 TCGA-DZ-6132-01 8 131921969 131921969 G C ADCY8 Missense_Mutation p.S542C 0.20 deleterious(0) probably_damaging(0.999) TCGA-DZ-6132-01 8 144659504 144659504 A G NAPRT1 Missense_Mutation p.M168T 0.17 deleterious(0) possibly_damaging(0.653) TCGA-DZ-6132-01 8 1497740 1497740 T A DLGAP2 Missense_Mutation p.L294Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-DZ-6132-01 8 43002092 43002092 C G HGSNAT Missense_Mutation p.D40E 0.19 deleterious(0.03) benign(0.183) TCGA-DZ-6132-01 8 6302563 6302563 T C MCPH1 Silent p.A440A 0.15 TCGA-DZ-6132-01 9 115806495 115806495 G - ZFP37 Frame_Shift_Del p.L135Sfs*50 0.13 TCGA-DZ-6132-01 9 131864688 131864688 G T CRAT Missense_Mutation p.H207Q 0.27 tolerated(0.08) probably_damaging(0.96) TCGA-DZ-6132-01 9 19369966 19369966 C T DENND4C Missense_Mutation p.P1837S 0.16 deleterious(0.03) benign(0.005) TCGA-DZ-6132-01 9 27197591 27197591 A G TEK Missense_Mutation p.S635G 0.18 tolerated(0.24) benign(0.014) TCGA-DZ-6132-01 9 88943326 88943326 C G ZCCHC6 Missense_Mutation p.D513H 0.20 deleterious(0.04) benign(0.39) TCGA-DZ-6132-01 X 101910063 101910063 T A GPRASP1 Missense_Mutation p.W408R 0.45 deleterious(0) probably_damaging(0.982) TCGA-DZ-6132-01 X 7023838 7023838 T G HDHD1 Missense_Mutation p.N58H 0.37 deleterious(0.02) benign(0.063) TCGA-DZ-6133-01 10 72503320 72503320 G T ADAMTS14 Missense_Mutation p.E650D 0.32 deleterious(0.04) probably_damaging(0.929) TCGA-DZ-6133-01 10 93812079 93812079 A G CPEB3 Missense_Mutation p.C663R 0.42 deleterious(0) probably_damaging(1) TCGA-DZ-6133-01 10 99120314 99120314 G - RRP12 Frame_Shift_Del p.P1210Lfs*33 0.36 TCGA-DZ-6133-01 10 99375928 99375932 CTCAT - MORN4 3'UTR 0.47 TCGA-DZ-6133-01 11 113270078 113270078 A G ANKK1 Missense_Mutation p.T463A 0.33 tolerated(0.05) benign(0.424) TCGA-DZ-6133-01 11 46637368 46637368 C A HARBI1 Silent p.G140G 0.36 TCGA-DZ-6133-01 11 68377390 68377390 T A PPP6R3 Silent p.S829S 0.45 TCGA-DZ-6133-01 12 104336447 104336447 T C HSP90B1 Missense_Mutation p.L506P 0.59 deleterious(0) probably_damaging(1) TCGA-DZ-6133-01 12 109834250 109834250 C T MYO1H Missense_Mutation p.L102F 0.53 deleterious(0.01) benign(0.164) TCGA-DZ-6133-01 12 119568567 119568567 C - SRRM4 Frame_Shift_Del p.P234Lfs*24 0.24 TCGA-DZ-6133-01 12 124848291 124848291 A G NCOR2 Silent p.N954N 0.53 TCGA-DZ-6133-01 12 132522561 132522561 G A EP400 Missense_Mutation p.A2043T 0.26 unknown(0) TCGA-DZ-6133-01 12 132522562 132522562 C T EP400 Missense_Mutation p.A2043V 0.26 unknown(0) TCGA-DZ-6133-01 12 30790088 30790088 C G IPO8 Silent p.L841L 0.63 TCGA-DZ-6133-01 12 31435663 31435663 A C FAM60A Missense_Mutation p.S217A 0.57 tolerated_low_confidence(0.48) benign(0.001) TCGA-DZ-6133-01 12 50041978 50041978 C T FMNL3 Missense_Mutation p.E892K 0.19 tolerated(0.09) probably_damaging(0.984) TCGA-DZ-6133-01 12 52145329 52145329 C - SCN8A Frame_Shift_Del p.H775Ifs*3 0.31 TCGA-DZ-6133-01 12 52708468 52708468 C T KRT83 Missense_Mutation p.G477S 0.38 tolerated_low_confidence(0.16) benign(0.005) TCGA-DZ-6133-01 12 7343122 7343122 T C PEX5 Missense_Mutation p.V50A 0.50 tolerated_low_confidence(0.07) benign(0.003) TCGA-DZ-6133-01 12 98941479 98941479 A - TMPO Frame_Shift_Del p.K295Rfs*12 0.37 TCGA-DZ-6133-01 13 101944368 101944368 G T NALCN Missense_Mutation p.S340R 0.63 tolerated(0.38) benign(0.017) TCGA-DZ-6133-01 13 41704906 41704906 T C KBTBD6 Missense_Mutation p.N581S 0.59 tolerated(0.13) benign(0.165) TCGA-DZ-6133-01 14 72055716 72055716 T C SIPA1L1 Missense_Mutation p.L376P 0.36 tolerated(0.31) benign(0.003) TCGA-DZ-6133-01 14 72055734 72055734 T A SIPA1L1 Missense_Mutation p.F382Y 0.34 tolerated(0.9) probably_damaging(0.942) TCGA-DZ-6133-01 15 100269138 100269138 A G LYSMD4 3'UTR 0.38 TCGA-DZ-6133-01 15 39885267 39885267 T C THBS1 Missense_Mutation p.I945T 0.44 deleterious(0.03) benign(0.438) TCGA-DZ-6133-01 15 43508525 43508525 C T EPB42 Missense_Mutation p.R76H 0.42 tolerated(0.23) benign(0.008) TCGA-DZ-6133-01 15 76074693 76074693 C T RN7SL319P 5'Flank 0.53 TCGA-DZ-6133-01 15 77756662 77756662 A G HMG20A Missense_Mutation p.Q57R 0.42 tolerated(0.19) benign(0.204) TCGA-DZ-6133-01 16 20851091 20851091 C T AC004381.6 Silent p.A466A 0.63 TCGA-DZ-6133-01 16 2130345 2130345 G A TSC2 Missense_Mutation p.G1193S 0.26 tolerated(0.1) probably_damaging(1) TCGA-DZ-6133-01 16 70867878 70867878 G A HYDIN Nonsense_Mutation p.Q4531* 0.08 TCGA-DZ-6133-01 17 16089949 16089949 G C NCOR1 Nonsense_Mutation p.S54* 0.31 TCGA-DZ-6133-01 17 36708962 36708962 C G SRCIN1 Missense_Mutation p.K777N 0.33 deleterious(0) probably_damaging(0.988) TCGA-DZ-6133-01 17 38319005 38319005 G A CASC3 Nonsense_Mutation p.W212* 0.23 TCGA-DZ-6133-01 17 47677672 47677672 G A SPOP 3'UTR 0.29 TCGA-DZ-6133-01 17 56348163 56348163 A T MPO Missense_Mutation p.S698T 0.64 tolerated(0.11) benign(0.172) TCGA-DZ-6133-01 17 59981846 59981846 G T INTS2 Missense_Mutation p.L436I 0.64 deleterious(0.04) probably_damaging(0.997) TCGA-DZ-6133-01 17 7149598 7149598 A G CTDNEP1 Missense_Mutation p.I151T 0.27 deleterious(0.02) benign(0.101) TCGA-DZ-6133-01 19 3648675 3648675 C T PIP5K1C Missense_Mutation p.G387R 0.52 deleterious(0) probably_damaging(1) TCGA-DZ-6133-01 19 38874011 38874011 A G PSMD8 Missense_Mutation p.Q345R 0.30 deleterious(0) benign(0.191) TCGA-DZ-6133-01 19 44981073 44981073 G C ZNF180 Missense_Mutation p.T542S 0.36 deleterious(0) possibly_damaging(0.893) TCGA-DZ-6133-01 19 46317979 46317979 G A RSPH6A Silent p.Y152Y 0.23 TCGA-DZ-6133-01 19 54803120 54803120 G T LILRA3 Missense_Mutation p.P186H 0.42 tolerated(0.1) probably_damaging(0.957) TCGA-DZ-6133-01 19 54963430 54963444 GTGGCCAGTGCACAG - LENG8 In_Frame_Del 0.41 TCGA-DZ-6133-01 19 58966903 58966903 T A ZNF324B Missense_Mutation p.C198S 0.38 tolerated(0.34) benign(0.004) TCGA-DZ-6133-01 19 731193 731193 C G PALM Missense_Mutation p.P123R 0.24 tolerated(0.08) benign(0.075) TCGA-DZ-6133-01 1 1269265 1269265 G A TAS1R3 Silent p.V660V 0.27 TCGA-DZ-6133-01 1 151372078 151372078 G A PSMB4 Silent p.L5L 0.41 TCGA-DZ-6133-01 1 156705540 156705540 G A RRNAD1 Missense_Mutation p.R382Q 0.48 deleterious(0.03) benign(0.412) TCGA-DZ-6133-01 1 156823725 156823725 G A INSRR Silent p.T152T 0.31 TCGA-DZ-6133-01 1 16266031 16266031 T A SPEN 3'UTR 0.50 TCGA-DZ-6133-01 1 19448476 19448477 - A UBR4 Frame_Shift_Ins p.A3283Cfs*16 0.26 TCGA-DZ-6133-01 1 204226699 204226699 C T PLEKHA6 Missense_Mutation p.E436K 0.59 tolerated(0.1) possibly_damaging(0.546) TCGA-DZ-6133-01 1 211192165 211192165 G A KCNH1 Missense_Mutation p.A331V 0.33 tolerated(0.29) benign(0.001) TCGA-DZ-6133-01 1 217975148 217975148 G T SPATA17 Nonsense_Mutation p.E321* 0.46 TCGA-DZ-6133-01 1 228494234 228494234 G A OBSCN Missense_Mutation p.G4898S 0.52 probably_damaging(0.999) TCGA-DZ-6133-01 1 22902942 22902942 G A EPHA8 Missense_Mutation p.R131H 0.45 tolerated(0.3) probably_damaging(0.999) TCGA-DZ-6133-01 20 33851638 33851638 C A MMP24 Missense_Mutation p.L288M 0.55 deleterious(0.02) probably_damaging(0.985) TCGA-DZ-6133-01 20 34800245 34800245 A G EPB41L1 Missense_Mutation p.I711V 0.33 tolerated(0.41) benign(0.001) TCGA-DZ-6133-01 21 16338944 16338944 T C NRIP1 Missense_Mutation p.N524D 0.41 tolerated(0.31) benign(0.022) TCGA-DZ-6133-01 21 34950574 34950574 T - DONSON 3'UTR 0.37 TCGA-DZ-6133-01 21 37410517 37410517 C G SETD4 Missense_Mutation p.K373N 0.47 tolerated(0.06) benign(0.217) TCGA-DZ-6133-01 22 47108141 47108141 T G CERK Missense_Mutation p.K143N 0.36 deleterious(0) probably_damaging(0.99) TCGA-DZ-6133-01 2 102493544 102493544 C A MAP4K4 Silent p.I962I 0.59 TCGA-DZ-6133-01 2 158971732 158971732 A G UPP2 Silent p.R157R 0.30 TCGA-DZ-6133-01 2 179468605 179468605 A G TTN Missense_Mutation p.I18270T 0.33 TCGA-DZ-6133-01 2 217364692 217364692 T A RPL37A Silent p.A51A 0.53 TCGA-DZ-6133-01 2 231077477 231077477 T G SP110 Silent p.S194S 0.54 TCGA-DZ-6133-01 2 70742029 70742029 G A TGFA Missense_Mutation p.A19V 0.48 tolerated_low_confidence(1) benign(0.001) TCGA-DZ-6133-01 2 74597431 74597431 T A DCTN1 Missense_Mutation p.K390M 0.31 deleterious(0) probably_damaging(0.998) TCGA-DZ-6133-01 3 101390027 101390027 A G ZBTB11 Missense_Mutation p.L242P 0.27 deleterious(0) probably_damaging(1) TCGA-DZ-6133-01 3 133692538 133692538 G C SLCO2A1 Silent p.S122S 0.28 TCGA-DZ-6133-01 3 194146121 194146121 G A ATP13A3 Missense_Mutation p.A1088V 0.53 deleterious(0.01) probably_damaging(0.984) TCGA-DZ-6133-01 3 47049869 47049869 G A NBEAL2 Missense_Mutation p.A2606T 0.61 deleterious(0.02) benign(0.025) TCGA-DZ-6133-01 3 49463424 49463424 C G NICN1 Silent p.L105L 0.31 TCGA-DZ-6133-01 3 52988412 52988412 A G SFMBT1 Missense_Mutation p.M15T 0.59 tolerated(0.39) benign(0.049) TCGA-DZ-6133-01 4 155470082 155470082 T C PLRG1 Silent p.V5V 0.38 TCGA-DZ-6133-01 4 26483517 26483517 C T CCKAR Missense_Mutation p.E344K 0.43 tolerated(0.74) benign(0.026) TCGA-DZ-6133-01 4 4322599 4322599 C A ZBTB49 Silent p.S618S 0.54 TCGA-DZ-6133-01 4 79516549 79516549 A G ANXA3 Silent p.E166E 0.35 TCGA-DZ-6133-01 5 1225707 1225707 G C SLC6A18 Missense_Mutation p.G39R 0.44 deleterious(0) probably_damaging(1) TCGA-DZ-6133-01 5 82357708 82357708 A G TMEM167A Missense_Mutation p.C46R 0.51 deleterious(0.01) benign(0.005) TCGA-DZ-6133-01 5 95728748 95728748 C T PCSK1 Missense_Mutation p.R740Q 0.43 tolerated_low_confidence(0.05) probably_damaging(0.968) TCGA-DZ-6133-01 5 98236974 98236974 T C CHD1 Missense_Mutation p.E168G 0.46 tolerated_low_confidence(0.19) benign(0.002) TCGA-DZ-6133-01 6 151151821 151151821 C T PLEKHG1 Missense_Mutation p.A525V 0.32 deleterious(0) benign(0.068) TCGA-DZ-6133-01 6 152671451 152671451 T C SYNE1 Missense_Mutation p.E3918G 0.27 probably_damaging(0.993) TCGA-DZ-6133-01 6 157527600 157527600 G A ARID1B Silent p.K1775K 0.38 TCGA-DZ-6133-01 6 30877829 30877829 C T GTF2H4 Silent p.A121A 0.43 TCGA-DZ-6133-01 6 30883015 30883015 G A VARS2 Splice_Site p.X125_splice 0.52 TCGA-DZ-6133-01 6 32714066 32714066 C T HLA-DQA2 Silent p.C221C 0.47 TCGA-DZ-6133-01 6 35199528 35199528 G T SCUBE3 Missense_Mutation p.G121C 0.47 deleterious(0) probably_damaging(1) TCGA-DZ-6133-01 6 44390515 44390515 A T CDC5L Missense_Mutation p.D458V 0.42 tolerated(0.21) benign(0.063) TCGA-DZ-6133-01 7 100349824 100349824 C A ZAN Missense_Mutation p.S699Y 0.44 possibly_damaging(0.702) TCGA-DZ-6133-01 7 142498828 142498828 C T TRBC2 Silent p.G35G 0.26 TCGA-DZ-6133-01 7 40117701 40117701 T - CDK13 Frame_Shift_Del p.L960* 0.35 TCGA-DZ-6133-01 7 75617587 75617587 G T POR 3'Flank 0.40 TCGA-DZ-6133-01 7 99017144 99017144 A C BUD31 3'UTR 0.33 TCGA-DZ-6133-01 8 22488017 22488017 G A BIN3 Silent p.L79L 0.40 TCGA-DZ-6133-01 8 6360731 6360731 G T ANGPT2 Missense_Mutation p.P461Q 0.37 tolerated(0.18) benign(0.12) TCGA-DZ-6133-01 8 82441686 82441686 C T FABP12 Missense_Mutation p.G78D 0.39 tolerated(1) benign(0.252) TCGA-DZ-6133-01 9 118949550 118949550 G T PAPPA Missense_Mutation p.R178L 0.39 deleterious(0) possibly_damaging(0.871) TCGA-DZ-6133-01 9 32541815 32541815 C G TOPORS Missense_Mutation p.R903P 0.39 tolerated(0.15) unknown(0) TCGA-DZ-6133-01 9 35061057 35061057 A G VCP Silent p.D438D 0.50 TCGA-DZ-6133-01 9 74313090 74313090 G T TMEM2 Missense_Mutation p.S1136R 0.35 tolerated(0.2) benign(0.007) TCGA-DZ-6133-01 9 84609482 84609482 T C SPATA31D1 Missense_Mutation p.I1366T 0.45 tolerated(0.58) benign(0.061) TCGA-DZ-6133-01 9 8471073 8471073 T C PTPRD Missense_Mutation p.I1142M 0.46 deleterious(0) possibly_damaging(0.791) TCGA-DZ-6133-01 X 63411696 63411696 G A AMER1 Missense_Mutation p.R491C 0.81 deleterious(0) possibly_damaging(0.67) TCGA-DZ-6134-01 10 116889093 116889093 A C ATRNL1 Missense_Mutation p.N209H 0.21 deleterious(0) probably_damaging(0.962) TCGA-DZ-6134-01 10 12595265 12595265 C T CAMK1D Missense_Mutation p.T45I 0.18 deleterious(0) benign(0.042) TCGA-DZ-6134-01 10 390986 390986 G A DIP2C Missense_Mutation p.A1099V 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-DZ-6134-01 11 57261478 57261478 T A SLC43A1 Missense_Mutation p.N287Y 0.18 deleterious(0.04) benign(0.317) TCGA-DZ-6134-01 11 76825445 76825445 C T CAPN5 Missense_Mutation p.H222Y 0.07 tolerated(0.31) benign(0.119) TCGA-DZ-6134-01 11 77921303 77921303 C T USP35 Missense_Mutation p.P801L 0.07 deleterious(0) probably_damaging(1) TCGA-DZ-6134-01 11 82877713 82877713 A G PCF11 Missense_Mutation p.K592E 0.18 tolerated(0.11) probably_damaging(0.993) TCGA-DZ-6134-01 12 53910964 53910964 G A ATF7 Missense_Mutation p.S470L 0.19 deleterious_low_confidence(0.02) benign(0.035) TCGA-DZ-6134-01 12 56558339 56558339 T C SMARCC2 Missense_Mutation p.I1106V 0.33 tolerated_low_confidence(0.52) unknown(0) TCGA-DZ-6134-01 14 105716270 105716270 C T BTBD6 Missense_Mutation p.A240V 0.12 deleterious(0) benign(0.314) TCGA-DZ-6134-01 14 55310765 55310765 C T GCH1 Silent p.R241R 0.16 TCGA-DZ-6134-01 15 41476042 41476042 C A EXD1 3'UTR 0.24 TCGA-DZ-6134-01 16 5140457 5140457 T A FAM86A Missense_Mutation p.E151V 0.09 deleterious(0) possibly_damaging(0.751) TCGA-DZ-6134-01 17 10426831 10426831 G A MYH2 Silent p.I1818I 0.36 TCGA-DZ-6134-01 17 2966535 2966535 A T OR1D5 Missense_Mutation p.Y123N 0.33 deleterious(0) possibly_damaging(0.865) TCGA-DZ-6134-01 17 30632400 30632400 C T RHBDL3 Silent p.V274V 0.13 TCGA-DZ-6134-01 17 34257138 34257138 G A RDM1 Missense_Mutation p.A73V 0.06 deleterious(0) probably_damaging(0.951) TCGA-DZ-6134-01 17 40720856 40720856 T C MLX Silent p.D111D 0.25 TCGA-DZ-6134-01 19 19313644 19313645 - T NR2C2AP Frame_Shift_Ins p.H29Tfs*7 0.17 TCGA-DZ-6134-01 19 31048256 31048256 A G ZNF536 3'UTR 0.29 TCGA-DZ-6134-01 19 33077713 33077713 A T PDCD5 Intron 0.28 TCGA-DZ-6134-01 19 37441598 37441598 T C ZNF568 Missense_Mutation p.S515P 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-DZ-6134-01 19 49447704 49447704 T G DHDH Missense_Mutation p.F279V 0.22 deleterious(0) benign(0.164) TCGA-DZ-6134-01 19 49447728 49447728 T A DHDH Missense_Mutation p.Y287N 0.18 deleterious(0) probably_damaging(0.927) TCGA-DZ-6134-01 19 58596700 58596700 G A ZSCAN18 Silent p.A351A 0.16 TCGA-DZ-6134-01 1 151378756 151378756 G A POGZ Missense_Mutation p.P919S 0.23 tolerated(1) benign(0.002) TCGA-DZ-6134-01 1 220964857 220964857 G A MARC1 Silent p.E100E 0.06 TCGA-DZ-6134-01 1 229568083 229568083 C T ACTA1 Missense_Mutation p.G184S 0.17 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-DZ-6134-01 1 24993373 24993373 C T SRRM1 Missense_Mutation p.P566S 0.13 unknown(0) TCGA-DZ-6134-01 1 9795602 9795602 C T CLSTN1 Missense_Mutation p.M602I 0.19 tolerated(0.43) benign(0.04) TCGA-DZ-6134-01 20 25469911 25469911 G T NINL Missense_Mutation p.A549E 0.15 tolerated(1) benign(0.007) TCGA-DZ-6134-01 20 25469912 25469912 C A NINL Missense_Mutation p.A549S 0.15 tolerated(0.09) benign(0.219) TCGA-DZ-6134-01 20 2796280 2796280 G T C20orf141 Silent p.L119L 0.11 TCGA-DZ-6134-01 20 2796281 2796281 C T C20orf141 Nonsense_Mutation p.Q120* 0.11 TCGA-DZ-6134-01 20 44005872 44005872 C G TP53TG5 Missense_Mutation p.K78N 0.05 deleterious(0.04) probably_damaging(0.918) TCGA-DZ-6134-01 2 10927529 10927529 A T PDIA6 Silent p.L345L 0.09 TCGA-DZ-6134-01 2 191859893 191859893 A T STAT1 Missense_Mutation p.L280M 0.33 deleterious(0.02) probably_damaging(0.991) TCGA-DZ-6134-01 2 219754883 219754883 G A WNT10A Missense_Mutation p.G185D 0.19 tolerated(0.07) possibly_damaging(0.857) TCGA-DZ-6134-01 2 231775289 231775289 C T GPR55 Missense_Mutation p.S130N 0.10 tolerated(0.16) benign(0.005) TCGA-DZ-6134-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.26 deleterious(0.04) probably_damaging(0.96) TCGA-DZ-6134-01 5 179751868 179751868 G A GFPT2 Silent p.V208V 0.18 TCGA-DZ-6134-01 6 34059742 34059742 C T GRM4 Nonsense_Mutation p.W218* 0.24 TCGA-DZ-6134-01 6 43275462 43275462 T C CRIP3 Silent p.V72V 0.16 TCGA-DZ-6134-01 7 100016757 100016757 T C ZCWPW1 Missense_Mutation p.Q113R 0.39 tolerated(0.68) benign(0.005) TCGA-DZ-6134-01 7 100780346 100780346 G C SERPINE1 Silent p.V384V 0.13 TCGA-DZ-6134-01 7 103017286 103017286 G T SLC26A5 Silent p.V670V 0.05 TCGA-DZ-6134-01 7 38389256 38389256 T C TRGV5 Silent p.K18K 0.27 TCGA-DZ-6134-01 7 90894779 90894779 G A FZD1 Missense_Mutation p.R195H 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-DZ-6134-01 7 99022814 99022814 G A ATP5J2-PTCD1 Silent p.A496A 0.33 TCGA-DZ-6134-01 9 115181173 115181173 A G HSDL2 Missense_Mutation p.Y178C 0.06 tolerated(1) benign(0) TCGA-DZ-6134-01 9 116151742 116151742 G A ALAD Silent p.D259D 0.22 TCGA-DZ-6134-01 9 88284397 88284397 C T AGTPBP1 Intron 0.09 TCGA-DZ-6134-01 X 2609851 2609851 G A CD99 Intron 0.34 TCGA-DZ-6135-01 11 118949934 118949934 C A VPS11 Missense_Mutation p.Q787K 0.38 tolerated(0.44) benign(0) TCGA-DZ-6135-01 12 6711561 6711561 C G CHD4 Missense_Mutation p.S68T 0.31 tolerated_low_confidence(0.18) benign(0.153) TCGA-DZ-6135-01 13 28143269 28143269 G A LNX2 Silent p.G184G 0.33 TCGA-DZ-6135-01 13 70549759 70549759 C G KLHL1 Missense_Mutation p.A225P 0.31 deleterious(0) benign(0.253) TCGA-DZ-6135-01 15 25616649 25616649 T A UBE3A Missense_Mutation p.L227F 0.33 tolerated(0.37) benign(0.002) TCGA-DZ-6135-01 16 12618621 12618621 C T SNX29 Silent p.N747N 0.39 TCGA-DZ-6135-01 16 775528 775528 G T CCDC78 Missense_Mutation p.T107N 0.33 tolerated(0.54) benign(0.075) TCGA-DZ-6135-01 17 18881233 18881233 T A FAM83G Missense_Mutation p.E582D 0.33 tolerated(0.23) benign(0.01) TCGA-DZ-6135-01 17 30815101 30815101 C T CDK5R1 Silent p.L155L 0.38 TCGA-DZ-6135-01 17 4837738 4837738 A G GP1BA Silent p.V613V 0.42 TCGA-DZ-6135-01 19 12060395 12060395 C G ZNF700 Missense_Mutation p.S519C 0.47 tolerated(0.24) possibly_damaging(0.902) TCGA-DZ-6135-01 19 50393785 50393785 C T IL4I1 Silent p.L304L 0.43 TCGA-DZ-6135-01 19 52496292 52496292 C A ZNF615 Silent p.P690P 0.41 TCGA-DZ-6135-01 19 59057198 59057198 G A TRIM28 Missense_Mutation p.C174Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-DZ-6135-01 1 152552161 152552161 G A LCE3D Silent p.C84C 0.34 TCGA-DZ-6135-01 1 156615922 156615922 G C BCAN Missense_Mutation p.E26Q 0.05 tolerated(0.29) possibly_damaging(0.724) TCGA-DZ-6135-01 1 85491894 85491894 G C MCOLN3 Silent p.L302L 0.38 TCGA-DZ-6135-01 22 46654232 46654232 A T PKDREJ Missense_Mutation p.M1663K 0.39 tolerated(0.84) benign(0.031) TCGA-DZ-6135-01 2 108994906 108994906 T C SULT1C4 Missense_Mutation p.I38T 0.43 deleterious(0) probably_damaging(0.96) TCGA-DZ-6135-01 2 170145584 170145584 A - LRP2 Frame_Shift_Del p.C332Vfs*74 0.25 TCGA-DZ-6135-01 2 65561771 65561771 C - SPRED2 Frame_Shift_Del p.G114Efs*2 0.34 TCGA-DZ-6135-01 2 74128513 74128513 T C ACTG2 Silent p.D25D 0.34 TCGA-DZ-6135-01 3 156266708 156266708 C A SSR3 Missense_Mutation p.K115N 0.23 deleterious(0) probably_damaging(0.96) TCGA-DZ-6135-01 3 183888625 183888628 TGTC - DVL3 3'UTR 0.60 TCGA-DZ-6135-01 3 78683096 78683096 C A ROBO1 Missense_Mutation p.S1157I 0.24 deleterious(0.02) probably_damaging(0.974) TCGA-DZ-6135-01 4 84342848 84342848 A G HELQ Silent p.F939F 0.45 TCGA-DZ-6135-01 5 10280520 10280520 T A CMBL 3'UTR 0.30 TCGA-DZ-6135-01 5 114573574 114573574 G A PGGT1B Missense_Mutation p.L154F 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-DZ-6135-01 5 140049032 140049032 T C WDR55 Silent p.H315H 0.39 TCGA-DZ-6135-01 5 176522539 176522539 C T FGFR4 Silent p.L546L 0.25 TCGA-DZ-6135-01 5 78415091 78415091 T C BHMT Missense_Mutation p.L59P 0.37 deleterious(0) probably_damaging(0.992) TCGA-DZ-6135-01 6 111632330 111632330 A T REV3L Missense_Mutation p.Y2913N 0.33 deleterious(0) probably_damaging(1) TCGA-DZ-6135-01 7 116423474 116423474 T C MET Missense_Mutation p.M1268T 0.43 deleterious(0) probably_damaging(0.999) TCGA-DZ-6135-01 7 142149130 142149130 C - TRBV5-5 Frame_Shift_Del p.H48Tfs*48 0.34 TCGA-DZ-6135-01 7 144060273 144060273 G C ARHGEF5 Missense_Mutation p.E171Q 0.18 tolerated(0.11) benign(0.066) TCGA-DZ-6135-01 7 26223344 26223347 TTCT - NFE2L3 Frame_Shift_Del p.F260Lfs*35 0.39 TCGA-DZ-6135-01 7 5567465 5567465 A G ACTB Missense_Mutation p.S348P 0.42 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DZ-6135-01 9 131361264 131361264 G T SPTAN1 Missense_Mutation p.R1181M 0.45 deleterious_low_confidence(0.05) possibly_damaging(0.66) TCGA-DZ-6135-01 9 32543270 32543270 T C TOPORS Missense_Mutation p.D418G 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-DZ-6135-01 9 86590458 86590458 G C HNRNPK Intron 0.42 TCGA-EV-5901-01 10 61836183 61836183 T C ANK3 Missense_Mutation p.R1486G 0.46 benign(0.095) TCGA-EV-5901-01 10 75185676 75185676 C T MSS51 Missense_Mutation p.G321D 0.05 deleterious(0.03) benign(0.057) TCGA-EV-5901-01 11 65270998 65270998 G A MALAT1 RNA 0.07 TCGA-EV-5901-01 12 121947832 121947832 C T KDM2B Silent p.R395R 0.34 TCGA-EV-5901-01 12 14796597 14796597 C T GUCY2C Missense_Mutation p.R614H 0.23 tolerated(0.06) benign(0.44) TCGA-EV-5901-01 12 6619468 6619468 A T NCAPD2 Intron 0.04 TCGA-EV-5901-01 13 23909472 23909472 A T SACS Missense_Mutation p.F2848Y 0.37 probably_damaging(0.983) TCGA-EV-5901-01 13 31821210 31821210 A G B3GALTL Silent p.A107A 0.28 TCGA-EV-5901-01 15 42717056 42717056 A C ZNF106 Missense_Mutation p.H1699Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-EV-5901-01 15 81230320 81230320 G A KIAA1199 Missense_Mutation p.G1136E 0.48 deleterious(0) probably_damaging(1) TCGA-EV-5901-01 16 30676958 30676958 G C FBRS Splice_Site p.X569_splice 0.20 TCGA-EV-5901-01 16 354433 354433 G A AXIN1 Silent p.Y375Y 0.07 TCGA-EV-5901-01 17 67283846 67283846 C T ABCA5 Missense_Mutation p.R650Q 0.53 deleterious(0) probably_damaging(0.999) TCGA-EV-5901-01 19 1272265 1272266 - G CIRBP Intron 0.44 TCGA-EV-5901-01 19 18313494 18313494 G C RAB3A Missense_Mutation p.F19L 0.28 deleterious(0.02) possibly_damaging(0.85) TCGA-EV-5901-01 19 621842 621842 C T POLRMT Missense_Mutation p.G619D 0.11 deleterious(0) probably_damaging(1) TCGA-EV-5901-01 1 145688091 145688091 T A RNF115 Missense_Mutation p.H262Q 0.34 deleterious(0) probably_damaging(0.993) TCGA-EV-5901-01 1 150201557 150201557 T G ANP32E Missense_Mutation p.N114T 0.41 deleterious(0.03) possibly_damaging(0.875) TCGA-EV-5901-01 1 160340735 160340735 G A NHLH1 Missense_Mutation p.A72T 0.27 tolerated(0.06) possibly_damaging(0.499) TCGA-EV-5901-01 1 161021130 161021130 C A ARHGAP30 Missense_Mutation p.G465V 0.37 deleterious(0.04) benign(0.343) TCGA-EV-5901-01 1 183221663 183221663 A G NMNAT2 3'UTR 0.36 TCGA-EV-5901-01 1 44442960 44442960 G A ATP6V0B Intron 0.48 TCGA-EV-5901-01 20 468205 468205 C T CSNK2A1 Missense_Mutation p.R280Q 0.32 tolerated(0.08) probably_damaging(0.971) TCGA-EV-5901-01 22 35779129 35779129 G T HMOX1 Missense_Mutation p.K18N 0.32 deleterious(0) probably_damaging(0.997) TCGA-EV-5901-01 22 39146253 39146253 A G SUN2 Missense_Mutation p.L187P 0.34 deleterious(0) possibly_damaging(0.653) TCGA-EV-5901-01 2 64199372 64199372 T A VPS54 Nonsense_Mutation p.K129* 0.35 TCGA-EV-5901-01 2 97216937 97216937 G A ARID5A Silent p.G224G 0.25 TCGA-EV-5901-01 2 97427340 97427340 C A CNNM4 Missense_Mutation p.L202I 0.36 deleterious(0) probably_damaging(0.999) TCGA-EV-5901-01 3 121825262 121825263 AT - CD86 Frame_Shift_Del p.F207Pfs*2 0.42 TCGA-EV-5901-01 3 134250746 134250746 G - CEP63 Frame_Shift_Del p.E95Nfs*6 0.39 TCGA-EV-5901-01 3 169847187 169847187 G A PHC3 Missense_Mutation p.P358L 0.30 tolerated(0.06) benign(0.008) TCGA-EV-5901-01 3 64004274 64004274 C A PSMD6 Splice_Site p.X276_splice 0.33 TCGA-EV-5901-01 3 97202865 97202865 A C EPHA6 Missense_Mutation p.D721A 0.60 deleterious(0) probably_damaging(0.957) TCGA-EV-5901-01 4 55139834 55139834 G A PDGFRA Missense_Mutation p.V499M 0.29 deleterious(0) possibly_damaging(0.882) TCGA-EV-5901-01 5 1268651 1268651 C A TERT Missense_Mutation p.G856W 0.09 deleterious(0) probably_damaging(0.999) TCGA-EV-5901-01 5 131729504 131729504 G A SLC22A5 Splice_Site p.X529_splice 0.40 TCGA-EV-5901-01 5 134235449 134235449 T - TXNDC15 3'UTR 0.37 TCGA-EV-5901-01 5 1488543 1488543 A T LPCAT1 Silent p.T210T 0.42 TCGA-EV-5901-01 5 6620280 6620280 C T NSUN2 Missense_Mutation p.D252N 0.33 tolerated(0.28) benign(0.029) TCGA-EV-5901-01 5 76989043 76989043 T C TBCA Intron 0.20 TCGA-EV-5901-01 5 82836813 82836813 A G VCAN Missense_Mutation p.D2664G 0.28 tolerated(0.11) benign(0.026) TCGA-EV-5901-01 6 30577691 30577691 G T PPP1R10 Missense_Mutation p.L11I 0.34 tolerated(0.14) probably_damaging(0.967) TCGA-EV-5901-01 6 31083768 31083778 GCCCAAGGCAT CAG CDSN 3'UTR 0.54 TCGA-EV-5901-01 6 31083778 31083778 T G CDSN 3'UTR 0.24 TCGA-EV-5901-01 7 102963052 102963052 A T DNAJC2 Missense_Mutation p.I280K 0.55 deleterious(0) probably_damaging(0.991) TCGA-EV-5901-01 7 102963053 102963053 T A DNAJC2 Missense_Mutation p.I280L 0.55 tolerated(0.06) probably_damaging(0.911) TCGA-EV-5901-01 7 31683522 31683527 GACTTT - CCDC129 In_Frame_Del p.T873_L874del 0.34 TCGA-EV-5901-01 7 43918184 43918184 A C URGCP Missense_Mutation p.F293C 0.29 deleterious(0) probably_damaging(0.999) TCGA-EV-5901-01 7 72907199 72907199 T C BAZ1B Silent p.G208G 0.23 TCGA-EV-5901-01 8 144997708 144997708 T A PLEC Missense_Mutation p.Q2267L 0.21 unknown(0) TCGA-EV-5901-01 9 139908396 139908396 G C ABCA2 Silent p.V1445V 0.37 TCGA-EV-5901-01 X 100646010 100646010 C T RPL36A-HNRNPH2 Silent p.R4R 0.29 TCGA-EV-5901-01 X 41202004 41202004 G A DDX3X Missense_Mutation p.G153E 0.38 tolerated(0.5) benign(0.013) TCGA-EV-5902-01 10 116225561 116225561 A G ABLIM1 Missense_Mutation p.M446T 0.51 tolerated(0.41) benign(0) TCGA-EV-5902-01 11 5717510 5717510 C T TRIM22 Silent p.P16P 0.52 TCGA-EV-5902-01 11 74717582 74717582 A G NEU3 3'UTR 0.05 TCGA-EV-5902-01 11 74800733 74800733 G A OR2AT4 Missense_Mutation p.S9L 0.47 deleterious(0) benign(0.365) TCGA-EV-5902-01 11 76867021 76867021 C T MYO7A Silent p.H118H 0.73 TCGA-EV-5902-01 12 82752495 82752495 G A METTL25 Missense_Mutation p.V51I 0.35 tolerated(0.25) benign(0.024) TCGA-EV-5902-01 12 8630141 8630141 A - CLEC6A 3'UTR 0.24 TCGA-EV-5902-01 12 97137640 97137640 A T C12orf55 Silent p.T2503T 0.51 TCGA-EV-5902-01 13 39587414 39587414 C A PROSER1 Missense_Mutation p.A659S 0.50 deleterious(0.04) benign(0.36) TCGA-EV-5902-01 13 45911726 45911726 G T TPT1 Intron 0.32 TCGA-EV-5902-01 13 46543501 46543502 - T ZC3H13 Frame_Shift_Ins p.E1060Rfs*7 0.13 TCGA-EV-5902-01 13 77799654 77799654 T C MYCBP2 Missense_Mutation p.K887E 0.44 benign(0.057) TCGA-EV-5902-01 14 106110991 106110991 A G IGHG2 Missense_Mutation p.L46P 0.42 deleterious(0) probably_damaging(1) TCGA-EV-5902-01 14 31355476 31355476 T C COCH Missense_Mutation p.Y479H 0.47 deleterious(0) probably_damaging(1) TCGA-EV-5902-01 14 36770005 36770006 - T MBIP Frame_Shift_Ins p.V305Sfs*12 0.50 TCGA-EV-5902-01 14 53360052 53360052 T C FERMT2 Missense_Mutation p.E162G 0.39 tolerated(0.31) benign(0.037) TCGA-EV-5902-01 16 14342808 14342808 C G MKL2 Missense_Mutation p.T708S 0.63 tolerated(0.69) benign(0.012) TCGA-EV-5902-01 16 1718163 1718163 C T CRAMP1L Silent p.I1101I 0.28 TCGA-EV-5902-01 16 53636027 53636027 C A RPGRIP1L Missense_Mutation p.Q1303H 0.67 tolerated(0.07) benign(0.238) TCGA-EV-5902-01 16 67236330 67236330 T G ELMO3 Missense_Mutation p.M484R 0.09 deleterious(0) possibly_damaging(0.863) TCGA-EV-5902-01 16 76587277 76587278 - GC CNTNAP4 Frame_Shift_Ins p.A1109Qfs*17 0.56 TCGA-EV-5902-01 17 40733760 40733760 G A FAM134C 3'UTR 0.40 TCGA-EV-5902-01 17 46051766 46051766 G A CDK5RAP3 Missense_Mutation p.D96N 0.09 deleterious(0) possibly_damaging(0.658) TCGA-EV-5902-01 17 58525181 58525181 C A APPBP2 Missense_Mutation p.G507C 0.42 deleterious(0) probably_damaging(1) TCGA-EV-5902-01 17 61950977 61950977 C T CSH2 5'UTR 0.13 TCGA-EV-5902-01 17 79860682 79860682 A T NPB 3'UTR 0.50 TCGA-EV-5902-01 18 29488737 29488737 T G TRAPPC8 Missense_Mutation p.I368L 0.43 tolerated(0.12) benign(0.032) TCGA-EV-5902-01 18 72179734 72179734 C A CNDP2 Missense_Mutation p.H237N 0.36 deleterious(0.03) benign(0.085) TCGA-EV-5902-01 18 74561610 74561610 G A ZNF236 Missense_Mutation p.E60K 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-EV-5902-01 19 13397703 13397703 C T CACNA1A Missense_Mutation p.R1056H 0.14 benign(0.212) TCGA-EV-5902-01 19 40541550 40541550 G T ZNF780B Missense_Mutation p.Q406K 0.44 tolerated(0.86) benign(0.292) TCGA-EV-5902-01 19 50434060 50434060 G A ATF5 5'UTR 0.88 TCGA-EV-5902-01 19 53384942 53384942 A G ZNF320 Missense_Mutation p.L146S 0.43 tolerated(1) benign(0.001) TCGA-EV-5902-01 19 53431678 53431678 C A ZNF321P 3'Flank 0.39 TCGA-EV-5902-01 19 8609279 8609279 C A MYO1F Missense_Mutation p.D476Y 0.49 deleterious(0.01) probably_damaging(0.946) TCGA-EV-5902-01 1 152279672 152279672 C A FLG Nonsense_Mutation p.G2564* 0.52 TCGA-EV-5902-01 1 171605341 171605341 G C MYOC Silent p.L413L 0.40 TCGA-EV-5902-01 1 228473855 228473855 G C OBSCN Silent p.R3456R 0.65 TCGA-EV-5902-01 1 27875947 27875947 T G AHDC1 Missense_Mutation p.K894Q 0.61 deleterious(0) possibly_damaging(0.607) TCGA-EV-5902-01 1 40705390 40705391 - T RLF Frame_Shift_Ins p.K1673* 0.35 TCGA-EV-5902-01 1 55569689 55569689 T C USP24 Missense_Mutation p.S1629G 0.31 tolerated(0.13) benign(0.012) TCGA-EV-5902-01 20 21142793 21142793 T A RP4-777D9.2 Intron 0.76 TCGA-EV-5902-01 21 22656582 22656582 G T NCAM2 Missense_Mutation p.V67L 0.34 tolerated(0.38) possibly_damaging(0.52) TCGA-EV-5902-01 22 18138590 18138590 C T BCL2L13 Missense_Mutation p.S38L 0.97 tolerated(0.25) benign(0.004) TCGA-EV-5902-01 22 30067890 30067905 AGGCTGCTGCAGATGA - NF2 Frame_Shift_Del p.R359Kfs*11 0.93 TCGA-EV-5902-01 2 102836361 102836361 A C IL1RL2 Missense_Mutation p.E292A 0.39 tolerated(0.25) benign(0.114) TCGA-EV-5902-01 2 168115244 168115247 TTTC - XIRP2 3'UTR 0.58 TCGA-EV-5902-01 2 179517427 179517427 T G TTN Missense_Mutation p.K12999T 0.46 TCGA-EV-5902-01 2 202073930 202073931 TG - CASP10 Frame_Shift_Del p.C354Yfs*15 0.36 TCGA-EV-5902-01 2 219754716 219754716 G C WNT10A Missense_Mutation p.E129D 0.38 deleterious(0) probably_damaging(0.992) TCGA-EV-5902-01 2 32667276 32667276 A C BIRC6 Missense_Mutation p.H1363P 0.54 benign(0.024) TCGA-EV-5902-01 2 38791355 38791355 T A HNRNPLL Missense_Mutation p.K528M 0.48 deleterious(0) probably_damaging(0.999) TCGA-EV-5902-01 2 39030017 39030017 T - DHX57 Frame_Shift_Del p.K1286Rfs*2 0.36 TCGA-EV-5902-01 2 44508525 44508525 G C SLC3A1 Splice_Site p.X204_splice 0.44 TCGA-EV-5902-01 2 49190328 49190328 G A FSHR Silent p.V544V 0.49 TCGA-EV-5902-01 2 95753148 95753148 C G MRPS5 Missense_Mutation p.G416A 0.46 deleterious(0.01) possibly_damaging(0.839) TCGA-EV-5902-01 3 138456588 138456588 T C PIK3CB Silent p.V254V 0.53 TCGA-EV-5902-01 3 183551347 183551347 C G PARL Missense_Mutation p.A321P 0.40 deleterious(0) possibly_damaging(0.877) TCGA-EV-5902-01 3 183551348 183551348 T G PARL Silent p.T320T 0.41 TCGA-EV-5902-01 3 196214405 196214405 G T RNF168 Silent p.A141A 0.48 TCGA-EV-5902-01 3 24003534 24003534 T G NR1D2 Missense_Mutation p.M195R 0.40 deleterious(0) probably_damaging(0.974) TCGA-EV-5902-01 3 38889146 38889146 C T SCN11A Missense_Mutation p.R1472Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-EV-5902-01 3 44935102 44935102 G A TGM4 Missense_Mutation p.R155H 0.42 deleterious(0) probably_damaging(0.991) TCGA-EV-5902-01 3 45874547 45874547 T G LZTFL1 Missense_Mutation p.N151H 0.36 tolerated(0.23) benign(0.044) TCGA-EV-5902-01 3 49362339 49362339 T C USP4 Silent p.L207L 0.47 TCGA-EV-5902-01 3 74350871 74350871 G T CNTN3 Missense_Mutation p.N624K 0.45 deleterious(0) possibly_damaging(0.513) TCGA-EV-5902-01 4 69203291 69203291 T G YTHDC1 Missense_Mutation p.E153A 0.53 tolerated_low_confidence(0.07) unknown(0) TCGA-EV-5902-01 4 71510231 71510231 C T ENAM Missense_Mutation p.P1030S 0.48 tolerated(0.09) possibly_damaging(0.612) TCGA-EV-5902-01 4 79512751 79512751 C T ANXA3 Missense_Mutation p.R153W 0.40 deleterious(0) probably_damaging(0.992) TCGA-EV-5902-01 5 131324510 131324510 T A ACSL6 Missense_Mutation p.I214F 0.33 deleterious(0) probably_damaging(0.999) TCGA-EV-5902-01 5 14471560 14471560 C T TRIO Missense_Mutation p.S1966F 0.73 benign(0.019) TCGA-EV-5902-01 5 154330411 154330411 T - MRPL22 Frame_Shift_Del p.S36Rfs*39 0.43 TCGA-EV-5902-01 5 160113261 160113261 G T ATP10B Missense_Mutation p.L99M 0.22 deleterious(0.01) possibly_damaging(0.714) TCGA-EV-5902-01 5 160113262 160113262 G C ATP10B Missense_Mutation p.F98L 0.22 deleterious(0) probably_damaging(0.998) TCGA-EV-5902-01 5 180374575 180374575 G A BTNL8 Missense_Mutation p.G246D 0.64 tolerated(0.39) possibly_damaging(0.543) TCGA-EV-5902-01 5 38954924 38954924 A C RICTOR Nonsense_Mutation p.Y883* 0.60 TCGA-EV-5902-01 5 67588178 67588178 A G PIK3R1 Silent p.G336G 0.32 TCGA-EV-5902-01 5 67591286 67591286 A T PIK3R1 Missense_Mutation p.N595I 0.30 deleterious(0) probably_damaging(0.957) TCGA-EV-5902-01 5 7873543 7873543 G A MTRR Missense_Mutation p.G90R 0.26 deleterious(0) probably_damaging(1) TCGA-EV-5902-01 5 93856355 93856363 AAATTTTTT C KIAA0825 Frame_Shift_Del p.Q187Rfs*29 0.22 TCGA-EV-5902-01 6 36949411 36949411 T A MTCH1 Missense_Mutation p.N120I 1.00 deleterious(0) probably_damaging(0.948) TCGA-EV-5902-01 7 100032922 100032922 T A PPP1R35 3'UTR 0.47 TCGA-EV-5902-01 7 110763780 110763780 A G LRRN3 Missense_Mutation p.N318D 0.56 deleterious(0) probably_damaging(1) TCGA-EV-5902-01 7 128626935 128626935 T A TNPO3 Missense_Mutation p.K513M 0.59 deleterious(0.03) benign(0.375) TCGA-EV-5902-01 7 26412183 26412200 GGAATCCTGAAAAATAAT - SNX10 Missense_Mutation 0.48 TCGA-EV-5902-01 7 27150278 27150278 T C HOXA3 5'UTR 0.37 TCGA-EV-5902-01 7 56045954 56045955 AC - GBAS Frame_Shift_Del p.Q77Vfs*5 0.43 TCGA-EV-5902-01 7 99753405 99753405 G A C7orf43 Silent p.A428A 0.52 TCGA-EV-5902-01 8 124243792 124243792 G T C8orf76 Missense_Mutation p.S188Y 0.03 deleterious(0.03) possibly_damaging(0.889) TCGA-EV-5902-01 8 144995793 144995793 C T PLEC Silent p.A2869A 0.06 TCGA-EV-5902-01 8 27097566 27097566 T - STMN4 Frame_Shift_Del p.K171Nfs*40 0.38 TCGA-EV-5902-01 9 114503767 114503767 A T C9orf84 Missense_Mutation p.F324Y 0.51 tolerated(0.07) possibly_damaging(0.638) TCGA-EV-5902-01 9 116837296 116837296 G - AMBP Frame_Shift_Del p.T94Sfs*23 0.35 TCGA-EV-5902-01 9 131515779 131515779 A - ZER1 Frame_Shift_Del p.F137Sfs*49 0.40 TCGA-EV-5902-01 9 140137389 140137389 T C TUBB4B Missense_Mutation p.L240P 0.44 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EV-5902-01 9 35739010 35739010 A G GBA2 Missense_Mutation p.I595T 0.53 deleterious(0.01) benign(0.206) TCGA-EV-5902-01 9 97063238 97063238 C T ZNF169 Silent p.G466G 0.52 TCGA-EV-5902-01 X 123519705 123519705 G T TENM1 Silent p.T1966T 0.18 TCGA-EV-5902-01 X 128963040 128963040 G T ZDHHC9 Missense_Mutation p.T82K 0.97 deleterious(0.03) benign(0.419) TCGA-EV-5903-01 10 118689489 118689489 C T KIAA1598 Missense_Mutation p.E295K 0.25 tolerated(0.2) benign(0.099) TCGA-EV-5903-01 10 118689491 118689491 A G KIAA1598 Missense_Mutation p.L294P 0.24 deleterious(0) probably_damaging(0.999) TCGA-EV-5903-01 10 131964822 131964822 G T GLRX3 Missense_Mutation p.S177I 0.24 deleterious(0.01) possibly_damaging(0.703) TCGA-EV-5903-01 10 3191832 3191832 A C PITRM1 Missense_Mutation p.F618V 0.28 deleterious(0) probably_damaging(0.994) TCGA-EV-5903-01 10 43651227 43651227 A G CSGALNACT2 Silent p.K210K 0.22 TCGA-EV-5903-01 10 79741971 79741971 C G POLR3A Missense_Mutation p.A1234P 0.30 tolerated(0.23) benign(0.427) TCGA-EV-5903-01 10 858887 858887 A G LARP4B Silent p.T732T 0.27 TCGA-EV-5903-01 11 18253017 18253017 C T SAA4 3'UTR 0.19 TCGA-EV-5903-01 11 46740795 46740795 G A F2 Missense_Mutation p.V4I 0.30 tolerated_low_confidence(0.62) benign(0.006) TCGA-EV-5903-01 11 4929158 4929158 C T OR51A7 Silent p.L187L 0.31 TCGA-EV-5903-01 11 552211 552211 C T LRRC56 Missense_Mutation p.A387V 0.34 tolerated(0.08) benign(0.064) TCGA-EV-5903-01 11 59573812 59573812 T C MRPL16 3'UTR 0.30 TCGA-EV-5903-01 11 6640045 6640045 A C TPP1 Missense_Mutation p.L64R 0.29 tolerated(0.13) benign(0.085) TCGA-EV-5903-01 11 66627368 66627368 T A LRFN4 Nonsense_Mutation p.L537* 0.42 TCGA-EV-5903-01 11 82877690 82877690 A T PCF11 Missense_Mutation p.N584I 0.18 deleterious(0.01) probably_damaging(0.949) TCGA-EV-5903-01 11 82878314 82878314 G C PCF11 Missense_Mutation p.E655D 0.22 deleterious(0.03) possibly_damaging(0.852) TCGA-EV-5903-01 11 89537575 89537575 G C TRIM49 Nonsense_Mutation p.Y21* 0.28 TCGA-EV-5903-01 12 118577332 118577332 G T PEBP1 Missense_Mutation p.G108C 0.16 deleterious(0) probably_damaging(1) TCGA-EV-5903-01 12 12980185 12980185 A C DDX47 Missense_Mutation p.D371A 0.33 deleterious(0) possibly_damaging(0.847) TCGA-EV-5903-01 12 2064679 2064679 G C DCP1B Missense_Mutation p.I190M 0.33 deleterious(0) probably_damaging(0.977) TCGA-EV-5903-01 12 26810769 26810769 A T ITPR2 Missense_Mutation p.I688N 0.32 tolerated(0.35) benign(0.039) TCGA-EV-5903-01 12 346349 346349 C G SLC6A13 Missense_Mutation p.W224S 0.23 deleterious(0.01) probably_damaging(0.97) TCGA-EV-5903-01 12 40265609 40265609 T C SLC2A13 Missense_Mutation p.S397G 0.36 deleterious(0) probably_damaging(0.999) TCGA-EV-5903-01 12 57891971 57891971 A C MARS Missense_Mutation p.I268L 0.31 deleterious(0.02) probably_damaging(0.919) TCGA-EV-5903-01 12 78513435 78513436 - G NAV3 Frame_Shift_Ins p.H1155Pfs*9 0.30 TCGA-EV-5903-01 13 20356720 20356720 C T PSPC1 Missense_Mutation p.E60K 0.29 tolerated(0.39) benign(0.022) TCGA-EV-5903-01 14 21821861 21821861 C T SUPT16H Splice_Site p.X974_splice 0.23 TCGA-EV-5903-01 14 22133796 22133796 C G OR4E2 Missense_Mutation p.P167R 0.31 deleterious(0) probably_damaging(1) TCGA-EV-5903-01 14 24036472 24036472 C - AP1G2 Frame_Shift_Del p.A18Pfs*10 0.32 TCGA-EV-5903-01 14 51219341 51219341 T A NIN Silent p.T1615T 0.30 TCGA-EV-5903-01 14 61434986 61434986 T C MNAT1 Silent p.L283L 0.33 TCGA-EV-5903-01 14 73733497 73733497 T C PAPLN Missense_Mutation p.L1126S 0.32 tolerated(0.34) benign(0.267) TCGA-EV-5903-01 15 78474881 78474881 T G ACSBG1 Missense_Mutation p.N274T 0.18 deleterious(0.02) benign(0.364) TCGA-EV-5903-01 16 28989282 28989282 A G SPNS1 Missense_Mutation p.R121G 0.45 deleterious(0) probably_damaging(1) TCGA-EV-5903-01 16 599030 599030 G A CAPN15 Missense_Mutation p.G496E 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-EV-5903-01 16 72198700 72198700 T C PMFBP1 Missense_Mutation p.N43S 0.45 tolerated(0.17) benign(0.094) TCGA-EV-5903-01 16 8890423 8890423 T C TMEM186 Missense_Mutation p.R10G 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.576) TCGA-EV-5903-01 16 89776218 89776219 GA - VPS9D1 Frame_Shift_Del p.S452Pfs*48 0.15 TCGA-EV-5903-01 17 17119717 17119717 A G FLCN Missense_Mutation p.I426T 0.14 deleterious(0) benign(0.193) TCGA-EV-5903-01 17 30687743 30687743 C A ZNF207 Missense_Mutation p.P145Q 0.19 deleterious(0.03) possibly_damaging(0.904) TCGA-EV-5903-01 17 46266785 46266785 C T SKAP1 Missense_Mutation p.D120N 0.21 deleterious(0) probably_damaging(0.963) TCGA-EV-5903-01 17 6328845 6328845 C T AIPL1 Missense_Mutation p.A364T 0.43 tolerated_low_confidence(0.3) unknown(0) TCGA-EV-5903-01 17 6328868 6328868 G A AIPL1 Missense_Mutation p.T356I 0.46 tolerated_low_confidence(0.19) unknown(0) TCGA-EV-5903-01 17 7386125 7386125 C T SLC35G6 Silent p.V274V 0.14 TCGA-EV-5903-01 18 66378637 66378637 A C TMX3 Missense_Mutation p.F35L 0.40 deleterious(0.04) possibly_damaging(0.717) TCGA-EV-5903-01 18 8376563 8376563 C T PTPRM Missense_Mutation p.R1144W 0.06 deleterious(0.02) probably_damaging(1) TCGA-EV-5903-01 19 1272588 1272588 C T CIRBP 3'UTR 0.21 TCGA-EV-5903-01 19 1785678 1785678 C A ATP8B3 Missense_Mutation p.K1061N 0.25 deleterious(0.01) benign(0.045) TCGA-EV-5903-01 19 19115397 19115397 G T SUGP2 Missense_Mutation p.L837I 0.28 deleterious(0.04) possibly_damaging(0.846) TCGA-EV-5903-01 19 39359912 39359925 TGCAGCGTCCGCCT - RINL Frame_Shift_Del p.R534Qfs*14 0.27 TCGA-EV-5903-01 19 49969107 49969107 G A ALDH16A1 Missense_Mutation p.G561S 0.25 tolerated(0.06) probably_damaging(1) TCGA-EV-5903-01 19 52659397 52659397 G A ZNF836 Silent p.L513L 0.27 TCGA-EV-5903-01 19 56329449 56329449 G T NLRP11 Missense_Mutation p.A31E 0.24 tolerated(1) benign(0.002) TCGA-EV-5903-01 19 8553754 8553754 A - HNRNPM 3'UTR 0.29 TCGA-EV-5903-01 1 110587506 110587507 - TA STRIP1 Frame_Shift_Ins p.G446* 0.23 TCGA-EV-5903-01 1 13942553 13942553 C T PDPN 3'UTR 0.41 TCGA-EV-5903-01 1 160783509 160783509 G A LY9 Missense_Mutation p.V180M 0.04 tolerated(0.23) probably_damaging(0.937) TCGA-EV-5903-01 1 165514059 165514059 C G LRRC52 Missense_Mutation p.L176V 0.27 deleterious(0) probably_damaging(0.999) TCGA-EV-5903-01 1 209788597 209788597 C T LAMB3 3'UTR 0.24 TCGA-EV-5903-01 1 210015618 210015618 G A DIEXF Missense_Mutation p.M498I 0.24 tolerated(0.08) benign(0.196) TCGA-EV-5903-01 1 62550317 62550317 C T INADL Silent p.P1458P 0.27 TCGA-EV-5903-01 1 82446519 82446519 C T LPHN2 Intron 0.25 TCGA-EV-5903-01 20 31601760 31601760 C G BPIFB2 Missense_Mutation p.N151K 0.35 tolerated(0.47) benign(0.01) TCGA-EV-5903-01 20 32376706 32376706 G T ZNF341 Silent p.A623A 0.33 TCGA-EV-5903-01 20 40730779 40730779 G A PTPRT Silent p.N1233N 0.16 TCGA-EV-5903-01 21 33651272 33651272 C T MIS18A Silent p.E18E 0.25 TCGA-EV-5903-01 21 34922663 34922663 T C SON Missense_Mutation p.S376P 0.26 benign(0.307) TCGA-EV-5903-01 22 42078365 42078365 C G NHP2L1 5'UTR 0.28 TCGA-EV-5903-01 2 132020929 132020929 T G POTEE Missense_Mutation p.L634R 0.17 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-EV-5903-01 2 180810243 180810243 A G CWC22 Silent p.P780P 0.25 TCGA-EV-5903-01 2 212295693 212295693 C A ERBB4 Nonsense_Mutation p.E874* 0.28 TCGA-EV-5903-01 2 219103554 219103554 T A ARPC2 Missense_Mutation p.Y146N 0.29 deleterious(0) probably_damaging(1) TCGA-EV-5903-01 2 239988463 239988463 A T HDAC4 Silent p.I981I 0.24 TCGA-EV-5903-01 2 242433435 242433435 G C FARP2 Silent p.V1020V 0.21 TCGA-EV-5903-01 2 27322367 27322367 T C KHK Missense_Mutation p.F245L 0.27 deleterious(0) benign(0.255) TCGA-EV-5903-01 2 27503082 27503082 A T DNAJC5G Nonstop_Mutation p.*190Lext*11 0.30 TCGA-EV-5903-01 2 33359941 33359941 A C LTBP1 Missense_Mutation p.N372T 0.31 deleterious(0) probably_damaging(0.945) TCGA-EV-5903-01 2 86371396 86371396 C G IMMT Missense_Mutation p.E758Q 0.32 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EV-5903-01 3 100593699 100593699 A C ABI3BP Missense_Mutation p.L306R 0.27 deleterious(0.03) possibly_damaging(0.766) TCGA-EV-5903-01 3 121260262 121260262 C A POLQ Missense_Mutation p.M136I 0.26 deleterious(0.02) benign(0.008) TCGA-EV-5903-01 3 128598498 128598498 G C ACAD9 5'UTR 0.23 TCGA-EV-5903-01 3 136573495 136573495 G - SLC35G2 Frame_Shift_Del p.R66Efs*18 0.20 TCGA-EV-5903-01 3 172227069 172227069 G C TNFSF10 Missense_Mutation p.P119R 0.25 tolerated(0.27) benign(0.011) TCGA-EV-5903-01 3 183508727 183508727 T C YEATS2 Missense_Mutation p.V1019A 0.28 tolerated_low_confidence(0.11) benign(0.002) TCGA-EV-5903-01 3 192078247 192078247 C A FGF12 Missense_Mutation p.D94Y 0.24 deleterious(0.01) probably_damaging(0.965) TCGA-EV-5903-01 3 33552091 33552091 G T CLASP2 Missense_Mutation p.L1434I 0.17 tolerated(0.2) probably_damaging(0.998) TCGA-EV-5903-01 3 49155544 49155544 G A USP19 Missense_Mutation p.S45F 0.23 tolerated_low_confidence(0.05) benign(0.004) TCGA-EV-5903-01 3 49159166 49159166 G A LAMB2 Missense_Mutation p.A1684V 0.29 tolerated(0.14) probably_damaging(0.998) TCGA-EV-5903-01 4 1165206 1165206 A T SPON2 Missense_Mutation p.F97I 0.15 deleterious(0) possibly_damaging(0.803) TCGA-EV-5903-01 4 1347115 1347115 A C UVSSA Missense_Mutation p.E283A 0.20 tolerated(0.1) benign(0.114) TCGA-EV-5903-01 4 141560501 141560501 T C TBC1D9 Missense_Mutation p.T807A 0.24 deleterious(0.04) benign(0.257) TCGA-EV-5903-01 4 155180741 155180741 C - DCHS2 Frame_Shift_Del p.A1794Hfs*25 0.20 TCGA-EV-5903-01 5 169724562 169724562 G C LCP2 Missense_Mutation p.D18E 0.23 tolerated(0.39) benign(0.059) TCGA-EV-5903-01 5 176639042 176639042 T C NSD1 Silent p.L1214L 0.33 TCGA-EV-5903-01 5 73161823 73161823 C T ARHGEF28 Nonsense_Mutation p.Q713* 0.12 TCGA-EV-5903-01 5 87521633 87521633 A G TMEM161B Missense_Mutation p.I81T 0.21 tolerated(0.08) benign(0.383) TCGA-EV-5903-01 5 92956598 92956598 A G FAM172A 3'UTR 0.23 TCGA-EV-5903-01 6 110528715 110528715 C T CDC40 Missense_Mutation p.A138V 0.28 deleterious(0) probably_damaging(0.998) TCGA-EV-5903-01 6 111409219 111409219 G T SLC16A10 Missense_Mutation p.Q88H 0.25 tolerated(0.24) probably_damaging(0.999) TCGA-EV-5903-01 6 136693761 136693761 A - MAP7 Frame_Shift_Del p.S274Lfs*25 0.20 TCGA-EV-5903-01 6 146264642 146264642 T - SHPRH Frame_Shift_Del p.E626Nfs*11 0.22 TCGA-EV-5903-01 6 17688708 17688708 G A NUP153 Missense_Mutation p.H85Y 0.31 tolerated(0.08) possibly_damaging(0.864) TCGA-EV-5903-01 6 27420017 27420017 T C ZNF184 Missense_Mutation p.T441A 0.32 deleterious(0.04) benign(0.125) TCGA-EV-5903-01 6 33260849 33260849 T C RGL2 Missense_Mutation p.I651V 0.33 deleterious(0) possibly_damaging(0.881) TCGA-EV-5903-01 6 34309651 34309651 T G NUDT3 Missense_Mutation p.E66D 0.20 deleterious(0) possibly_damaging(0.766) TCGA-EV-5903-01 6 46108114 46108114 T G ENPP4 Missense_Mutation p.L265W 0.23 tolerated(0.19) benign(0.021) TCGA-EV-5903-01 6 83862020 83862020 T A DOPEY1 Silent p.P2021P 0.30 TCGA-EV-5903-01 7 100187679 100187679 A C FBXO24 Missense_Mutation p.Q78P 0.34 deleterious_low_confidence(0) benign(0.418) TCGA-EV-5903-01 7 111127299 111127299 T A IMMP2L Silent p.S78S 0.33 TCGA-EV-5903-01 7 12679988 12679988 G A SCIN Missense_Mutation p.G476D 0.39 deleterious(0) probably_damaging(1) TCGA-EV-5903-01 7 149509420 149509420 G A SSPO RNA 0.24 TCGA-EV-5903-01 7 2587034 2587034 C G BRAT1 Missense_Mutation p.S69T 0.46 deleterious(0.01) benign(0.424) TCGA-EV-5903-01 8 109462688 109462688 A T EMC2 Silent p.A62A 0.22 TCGA-EV-5903-01 8 120114630 120114630 A G COLEC10 Silent p.K112K 0.05 TCGA-EV-5903-01 8 20068802 20068802 C T ATP6V1B2 Missense_Mutation p.S193F 0.36 deleterious(0) probably_damaging(1) TCGA-EV-5903-01 8 67342373 67342373 G A RRS1 Missense_Mutation p.G336E 0.26 tolerated(0.05) unknown(0) TCGA-EV-5903-01 9 107599352 107599352 G T ABCA1 Missense_Mutation p.A407D 0.24 tolerated(0.15) benign(0.004) TCGA-EV-5903-01 9 131755475 131755475 G A NUP188 Splice_Site p.X881_splice 0.26 TCGA-EV-5903-01 9 132618631 132618631 T A USP20 Missense_Mutation p.C43S 0.28 deleterious(0) probably_damaging(0.991) TCGA-EV-5903-01 9 133730265 133730265 G C ABL1 Missense_Mutation p.V130L 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-EV-5903-01 9 135601117 135601117 G C AK8 Missense_Mutation p.I466M 0.33 deleterious(0) probably_damaging(0.916) TCGA-EV-5903-01 9 27548367 27548367 T A C9orf72 Missense_Mutation p.D438V 0.20 deleterious(0) probably_damaging(0.999) TCGA-EV-5903-01 9 33319104 33319106 CCT - NFX1 In_Frame_Del p.P629del 0.42 TCGA-EV-5903-01 9 36170075 36170075 C T CCIN Silent p.L192L 0.39 TCGA-EV-5903-01 9 84605892 84605892 G A SPATA31D1 Silent p.S169S 0.26 TCGA-EV-5903-01 9 96416716 96416716 A C PHF2 Missense_Mutation p.I271L 0.27 deleterious(0) unknown(0) TCGA-EV-5903-01 X 109695935 109695935 T G RGAG1 Missense_Mutation p.M697R 0.63 tolerated(0.25) benign(0.022) TCGA-EV-5903-01 X 48682180 48682180 G A HDAC6 Silent p.R1096R 0.69 TCGA-F9-A4JJ-01 10 15688856 15688856 T C ITGA8 Missense_Mutation p.D399G 0.07 deleterious(0) probably_damaging(0.984) TCGA-F9-A4JJ-01 10 88718401 88718401 G A SNCG 5'Flank 0.08 TCGA-F9-A4JJ-01 11 124135723 124135723 T C OR8G5 Missense_Mutation p.V334A 0.06 tolerated_low_confidence(0.07) benign(0.013) TCGA-F9-A4JJ-01 11 134131026 134131026 G A ACAD8 Missense_Mutation p.G265D 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-F9-A4JJ-01 11 2432685 2432685 C T TRPM5 Silent p.A893A 0.31 TCGA-F9-A4JJ-01 12 57440666 57440666 G A MYO1A Silent p.L174L 0.08 TCGA-F9-A4JJ-01 13 39438496 39438496 A G FREM2 Missense_Mutation p.K2579R 0.08 tolerated(0.96) benign(0.006) TCGA-F9-A4JJ-01 15 91517424 91517424 G T PRC1 Missense_Mutation p.P468H 0.09 tolerated(0.16) probably_damaging(0.989) TCGA-F9-A4JJ-01 16 20871250 20871250 G A DCUN1D3 Silent p.L291L 0.43 TCGA-F9-A4JJ-01 16 32893883 32893883 C A RP11-989E6.3 5'Flank 0.12 TCGA-F9-A4JJ-01 16 61687954 61687954 A C CDH8 Missense_Mutation p.I653S 0.30 tolerated(0.05) probably_damaging(0.995) TCGA-F9-A4JJ-01 16 89627425 89627425 C T RPL13 Missense_Mutation p.R20W 0.47 deleterious(0) benign(0.002) TCGA-F9-A4JJ-01 17 48148253 48148253 A G ITGA3 Missense_Mutation p.Y237C 0.40 tolerated(0.15) possibly_damaging(0.819) TCGA-F9-A4JJ-01 17 4871031 4871031 A C SPAG7 Silent p.T23T 0.24 TCGA-F9-A4JJ-01 17 67081770 67081770 C T ABCA6 Missense_Mutation p.G1342E 0.04 deleterious(0) probably_damaging(0.993) TCGA-F9-A4JJ-01 18 31224902 31224902 A G ASXL3 Missense_Mutation p.N61S 0.10 benign(0.068) TCGA-F9-A4JJ-01 18 44560193 44560193 G A TCEB3B Silent p.D481D 0.40 TCGA-F9-A4JJ-01 19 12574997 12574997 C T ZNF709 Missense_Mutation p.R580K 0.30 tolerated(0.09) benign(0.037) TCGA-F9-A4JJ-01 19 19654855 19654855 G A CILP2 Missense_Mutation p.G501S 0.36 tolerated(0.38) probably_damaging(1) TCGA-F9-A4JJ-01 19 52327625 52327625 T A FPR3 Silent p.I208I 0.42 TCGA-F9-A4JJ-01 1 151502428 151502428 G A CGN Missense_Mutation p.R717Q 0.50 tolerated(0.29) possibly_damaging(0.838) TCGA-F9-A4JJ-01 1 154471704 154471704 A G SHE Missense_Mutation p.L201S 0.28 deleterious(0) possibly_damaging(0.732) TCGA-F9-A4JJ-01 1 169094224 169094232 AAAAGTACA - ATP1B1 In_Frame_Del p.K111_K113del 0.25 TCGA-F9-A4JJ-01 1 201166405 201166405 C T IGFN1 Silent p.Y109Y 0.29 TCGA-F9-A4JJ-01 1 207669654 207669654 G C CR1 Silent p.P14P 0.11 TCGA-F9-A4JJ-01 1 214170147 214170147 C A PROX1 Missense_Mutation p.A90E 0.05 deleterious(0.02) possibly_damaging(0.856) TCGA-F9-A4JJ-01 1 241661272 241661272 T G FH Splice_Site p.X464_splice 0.28 TCGA-F9-A4JJ-01 20 36870194 36870194 C T KIAA1755 Silent p.E113E 0.22 TCGA-F9-A4JJ-01 21 15599303 15599303 G T RBM11 Missense_Mutation p.D179Y 0.42 deleterious_low_confidence(0) unknown(0) TCGA-F9-A4JJ-01 2 135738691 135738691 C G MAP3K19 Missense_Mutation p.C1207S 0.29 deleterious(0) probably_damaging(0.999) TCGA-F9-A4JJ-01 2 77746638 77746638 G T LRRTM4 Missense_Mutation p.N119K 0.26 deleterious(0) probably_damaging(0.999) TCGA-F9-A4JJ-01 2 89976362 89976362 A G IGKV2D-30 Missense_Mutation p.N78S 0.04 tolerated(0.21) benign(0.057) TCGA-F9-A4JJ-01 3 63981359 63981359 C T ATXN7 Missense_Mutation p.H621Y 0.28 tolerated(0.53) possibly_damaging(0.55) TCGA-F9-A4JJ-01 5 14497115 14497115 G C TRIO Missense_Mutation p.V2670L 0.26 unknown(0) TCGA-F9-A4JJ-01 6 133849920 133849920 G T EYA4 Missense_Mutation p.A633S 0.05 deleterious(0) probably_damaging(0.915) TCGA-F9-A4JJ-01 6 31431638 31431638 C T HCP5 RNA 0.46 TCGA-F9-A4JJ-01 6 32037362 32037362 C T TNXB Missense_Mutation p.R1852H 0.07 probably_damaging(0.995) TCGA-F9-A4JJ-01 7 128482660 128482660 G A FLNC Missense_Mutation p.R766Q 0.10 deleterious(0.03) benign(0.212) TCGA-F9-A4JJ-01 7 75145521 75145521 G A Y_RNA 5'Flank 0.37 TCGA-F9-A4JJ-01 7 92932815 92932815 T G CCDC132 Missense_Mutation p.W469G 0.34 deleterious(0.01) probably_damaging(1) TCGA-F9-A4JJ-01 8 133829702 133829702 T G PHF20L1 Missense_Mutation p.C497W 0.12 tolerated(0.16) possibly_damaging(0.533) TCGA-F9-A4JJ-01 8 29037680 29037680 G A KIF13B Nonsense_Mutation p.R221* 0.41 TCGA-F9-A4JJ-01 8 87443954 87443954 G A WWP1 Missense_Mutation p.R528H 0.04 deleterious(0) benign(0.427) TCGA-F9-A4JJ-01 9 84608041 84608041 G A SPATA31D1 Missense_Mutation p.V886I 0.48 tolerated(0.52) benign(0.008) TCGA-F9-A4JJ-01 9 93375537 93375537 C T DIRAS2 Silent p.K191K 0.41 TCGA-F9-A4JJ-01 X 119581842 119581842 G A LAMP2 Missense_Mutation p.P199S 0.08 tolerated(0.07) probably_damaging(0.933) TCGA-F9-A4JJ-01 X 152613816 152613816 T G ZNF275 3'UTR 0.04 TCGA-F9-A4JJ-01 X 48840222 48840222 C T GRIPAP1 Missense_Mutation p.E413K 0.07 possibly_damaging(0.716) TCGA-F9-A4JJ-01 X 91133625 91133625 C A PCDH11X Missense_Mutation p.P796T 0.43 tolerated(0.13) benign(0.102) TCGA-F9-A7Q0-01 10 21806056 21806056 G A SKIDA1 Silent p.A232A 0.10 TCGA-F9-A7Q0-01 11 63885924 63885924 A G FLRT1 3'UTR 0.45 TCGA-F9-A7Q0-01 14 51101991 51101991 A T SAV1 Nonsense_Mutation p.Y354* 0.73 TCGA-F9-A7Q0-01 15 24920761 24920761 G T NPAP1 5'UTR 0.80 TCGA-F9-A7Q0-01 16 71509777 71509777 C T ZNF19 Missense_Mutation p.A225T 0.33 deleterious(0.03) probably_damaging(0.993) TCGA-F9-A7Q0-01 17 33348798 33348798 C T RFFL Silent p.Q61Q 0.41 TCGA-F9-A7Q0-01 17 40354806 40354806 C G STAT5B Missense_Mutation p.V700L 0.03 deleterious(0.04) possibly_damaging(0.571) TCGA-F9-A7Q0-01 19 10886526 10886526 A G DNM2 Missense_Mutation p.N178S 0.48 deleterious(0) probably_damaging(0.974) TCGA-F9-A7Q0-01 19 41386516 41386516 C A CYP2A7 Missense_Mutation p.G121W 0.06 tolerated(0.05) benign(0.283) TCGA-F9-A7Q0-01 19 49517821 49517821 C A RUVBL2 Missense_Mutation p.P361H 0.30 deleterious(0) probably_damaging(0.965) TCGA-F9-A7Q0-01 19 51869601 51869601 C A CLDND2 3'Flank 0.45 TCGA-F9-A7Q0-01 19 9008207 9008207 G A MUC16 Silent p.P13115P 0.07 TCGA-F9-A7Q0-01 1 31351395 31351395 G T SDC3 Intron 0.06 TCGA-F9-A7Q0-01 20 31608183 31608183 G A BPIFB2 Missense_Mutation p.G377E 0.45 deleterious(0) probably_damaging(0.975) TCGA-F9-A7Q0-01 2 179612896 179612896 T C TTN Intron 0.41 TCGA-F9-A7Q0-01 2 238672877 238672878 - T LRRFIP1 3'UTR 0.08 TCGA-F9-A7Q0-01 3 170150353 170150353 G A CLDN11 Missense_Mutation p.A145T 0.40 tolerated(0.16) benign(0.018) TCGA-F9-A7Q0-01 3 42572301 42572301 C T VIPR1 Nonsense_Mutation p.Q223* 0.41 TCGA-F9-A7Q0-01 3 49137278 49137278 T C QARS Missense_Mutation p.Y435C 0.35 deleterious(0) probably_damaging(0.999) TCGA-F9-A7Q0-01 5 154395607 154395607 G T KIF4B Nonsense_Mutation p.E730* 0.20 TCGA-F9-A7Q0-01 6 117683796 117683796 G T ROS1 Silent p.G1117G 0.05 TCGA-F9-A7Q0-01 7 116937828 116937828 C T WNT2 Missense_Mutation p.G231S 0.47 deleterious(0) probably_damaging(1) TCGA-F9-A7Q0-01 7 15726145 15726145 G T MEOX2 5'UTR 0.30 TCGA-F9-A7Q0-01 7 45039911 45039911 C G CCM2 5'UTR 0.48 TCGA-F9-A7Q0-01 8 17915019 17915019 G A ASAH1 3'UTR 0.07 TCGA-F9-A7Q0-01 9 134038515 134038515 T G NUP214 Missense_Mutation p.L893R 0.05 benign(0.007) TCGA-F9-A7Q0-01 9 79119299 79119299 T A GCNT1 3'UTR 0.45 TCGA-F9-A7VF-01 10 104181618 104181618 G C FBXL15 Silent p.L94L 0.27 TCGA-F9-A7VF-01 10 131757260 131757260 G C EBF3 Nonsense_Mutation p.Y141* 0.49 TCGA-F9-A7VF-01 10 134646865 134646865 T G TTC40 Missense_Mutation p.T2372P 0.41 tolerated(0.26) benign(0.002) TCGA-F9-A7VF-01 10 24810770 24810770 G A KIAA1217 Missense_Mutation p.V790M 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-F9-A7VF-01 10 81274461 81274461 G C EIF5AL1 3'UTR 0.44 TCGA-F9-A7VF-01 11 110102521 110102521 C T RDX Intron 0.37 TCGA-F9-A7VF-01 11 124765767 124765767 G A ROBO4 Nonsense_Mutation p.R241* 0.07 TCGA-F9-A7VF-01 11 407106 407106 A G SIGIRR Silent p.L228L 0.59 TCGA-F9-A7VF-01 11 56000203 56000203 G A OR5T2 Silent p.L153L 0.41 TCGA-F9-A7VF-01 11 71507154 71507154 C A FAM86C1 Missense_Mutation p.S118Y 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.481) TCGA-F9-A7VF-01 11 9830367 9830367 A - SBF2 Intron 0.30 TCGA-F9-A7VF-01 12 101988761 101988761 T G MYBPC1 5'UTR 0.41 TCGA-F9-A7VF-01 12 110390969 110390969 G A GIT2 Silent p.P390P 0.52 TCGA-F9-A7VF-01 12 21962796 21962797 AG - ABCC9 Frame_Shift_Del p.P1435Rfs*9 0.24 TCGA-F9-A7VF-01 12 56537689 56537689 C T ESYT1 3'UTR 0.52 TCGA-F9-A7VF-01 13 77732194 77732194 A G MYCBP2 Silent p.H2178H 0.36 TCGA-F9-A7VF-01 14 23900190 23900190 C T MYH7 Missense_Mutation p.R272K 0.52 deleterious(0) probably_damaging(0.912) TCGA-F9-A7VF-01 14 24584692 24584692 T A DCAF11 5'UTR 0.36 TCGA-F9-A7VF-01 14 24798392 24798392 G A ADCY4 Missense_Mutation p.L467F 0.43 deleterious(0.05) benign(0.063) TCGA-F9-A7VF-01 14 31771694 31771694 G A RP11-596D21.1 RNA 0.36 TCGA-F9-A7VF-01 14 39639505 39639505 G C TRAPPC6B 5'UTR 0.44 TCGA-F9-A7VF-01 14 90870770 90870770 A C CALM1 Silent p.T111T 0.48 TCGA-F9-A7VF-01 15 28380665 28380665 C G HERC2 Missense_Mutation p.W4063C 0.40 probably_damaging(1) TCGA-F9-A7VF-01 15 59350658 59350658 T A RNF111 Silent p.T425T 0.34 TCGA-F9-A7VF-01 15 63419075 63419075 G T LACTB Missense_Mutation p.V148F 0.43 deleterious(0) probably_damaging(0.914) TCGA-F9-A7VF-01 16 27375041 27375041 A G IL4R Missense_Mutation p.K790E 0.27 deleterious(0) benign(0.025) TCGA-F9-A7VF-01 16 3727498 3727498 C G TRAP1 Splice_Site p.X235_splice 0.37 TCGA-F9-A7VF-01 16 69148783 69148783 T C HAS3 Missense_Mutation p.Y426H 0.43 deleterious(0) probably_damaging(0.91) TCGA-F9-A7VF-01 17 20805636 20805636 C T RP11-344E13.3 RNA 0.34 TCGA-F9-A7VF-01 17 28534784 28534784 A T SLC6A4 Missense_Mutation p.I539N 0.60 deleterious(0) possibly_damaging(0.571) TCGA-F9-A7VF-01 17 3480920 3480920 A G SHPK Missense_Mutation p.M562T 0.29 tolerated(0.67) benign(0.056) TCGA-F9-A7VF-01 17 3947660 3947660 T - ZZEF1 Frame_Shift_Del p.A2009Lfs*9 0.35 TCGA-F9-A7VF-01 17 40369252 40369259 TCACCGAC - STAT5B Frame_Shift_Del p.E433Dfs*10 0.47 TCGA-F9-A7VF-01 17 41174341 41174341 G T VAT1 5'UTR 0.58 TCGA-F9-A7VF-01 17 62499923 62499923 T C DDX5 Missense_Mutation p.I169V 0.38 deleterious(0.05) benign(0.16) TCGA-F9-A7VF-01 17 66511650 66511650 A G PRKAR1A Missense_Mutation p.Q37R 0.55 tolerated(0.1) benign(0.152) TCGA-F9-A7VF-01 17 73571018 73571018 G A LLGL2 3'UTR 0.48 TCGA-F9-A7VF-01 17 74097811 74097811 A C EXOC7 Missense_Mutation p.V87G 0.27 deleterious(0) possibly_damaging(0.638) TCGA-F9-A7VF-01 17 74097812 74097812 C A EXOC7 Missense_Mutation p.V87F 0.27 deleterious(0) possibly_damaging(0.549) TCGA-F9-A7VF-01 18 43206963 43206963 A G SLC14A2 Silent p.R124R 0.44 TCGA-F9-A7VF-01 19 37853726 37853726 C T HKR1 Silent p.N343N 0.44 TCGA-F9-A7VF-01 19 45856364 45856364 T G ERCC2 Missense_Mutation p.K603T 0.40 deleterious(0) probably_damaging(0.948) TCGA-F9-A7VF-01 19 46623600 46623600 A G IGFL3 Missense_Mutation p.V122A 0.44 tolerated_low_confidence(0.38) unknown(0) TCGA-F9-A7VF-01 19 46623601 46623601 C A IGFL3 Missense_Mutation p.V122F 0.45 deleterious_low_confidence(0.04) unknown(0) TCGA-F9-A7VF-01 1 110051227 110051227 G T AMIGO1 Missense_Mutation p.S103Y 0.37 deleterious(0.01) probably_damaging(0.911) TCGA-F9-A7VF-01 1 112003839 112003839 T G ATP5F1 3'UTR 0.40 TCGA-F9-A7VF-01 1 112299342 112299342 C T DDX20 Missense_Mutation p.L126F 0.48 deleterious(0.02) possibly_damaging(0.712) TCGA-F9-A7VF-01 1 145515471 145515471 C A PEX11B 5'Flank 0.58 TCGA-F9-A7VF-01 1 151317225 151317225 T A RFX5 Missense_Mutation p.Q111L 0.43 deleterious(0) probably_damaging(0.996) TCGA-F9-A7VF-01 1 152284898 152284898 G T FLG Missense_Mutation p.H822N 0.34 benign(0.035) TCGA-F9-A7VF-01 1 153233515 153233515 C T LOR Silent p.G30G 0.07 TCGA-F9-A7VF-01 1 169519125 169519125 C T F5 Missense_Mutation p.V509M 0.36 deleterious(0) probably_damaging(1) TCGA-F9-A7VF-01 1 17033799 17033799 C T ESPNP RNA 0.24 TCGA-F9-A7VF-01 1 22180783 22180783 T C HSPG2 Silent p.E2114E 0.46 TCGA-F9-A7VF-01 1 41976929 41976929 G T HIVEP3 Silent p.A2138A 0.52 TCGA-F9-A7VF-01 1 45485775 45485775 C T ZSWIM5 Silent p.E886E 0.38 TCGA-F9-A7VF-01 1 52929064 52929064 C A ZCCHC11 Intron 0.43 TCGA-F9-A7VF-01 1 6158661 6158661 G - KCNAB2 3'UTR 0.27 TCGA-F9-A7VF-01 20 3842062 3842062 C A MAVS Missense_Mutation p.H126N 0.57 tolerated(0.78) benign(0.349) TCGA-F9-A7VF-01 20 45216777 45216777 G T SLC13A3 Missense_Mutation p.L348I 0.21 tolerated(0.13) benign(0.297) TCGA-F9-A7VF-01 20 52612540 52612540 T G BCAS1 Missense_Mutation p.D258A 0.16 deleterious(0.04) benign(0.018) TCGA-F9-A7VF-01 21 15746231 15746231 C A HSPA13 Nonsense_Mutation p.E375* 0.36 TCGA-F9-A7VF-01 21 15746238 15746238 G T HSPA13 Silent p.T372T 0.36 TCGA-F9-A7VF-01 22 37406919 37406919 A G TST 3'UTR 0.33 TCGA-F9-A7VF-01 2 168105464 168105464 C T XIRP2 Missense_Mutation p.S2521F 0.34 probably_damaging(0.989) TCGA-F9-A7VF-01 2 179460381 179460381 C T TTN Missense_Mutation p.V19234M 0.39 TCGA-F9-A7VF-01 2 197576887 197576887 G C CCDC150 Missense_Mutation p.E572Q 0.38 tolerated(0.36) possibly_damaging(0.58) TCGA-F9-A7VF-01 2 224463934 224463934 A G SCG2 Missense_Mutation p.S23P 0.39 tolerated(0.22) benign(0.005) TCGA-F9-A7VF-01 3 10442753 10442753 A T ATP2B2 Missense_Mutation p.L222H 0.25 deleterious(0) probably_damaging(1) TCGA-F9-A7VF-01 3 113659165 113659165 C G GRAMD1C Silent p.L627L 0.20 TCGA-F9-A7VF-01 3 11374553 11374553 T A ATG7 Missense_Mutation p.M292K 0.23 tolerated(0.34) benign(0) TCGA-F9-A7VF-01 3 183888399 183888400 - C DVL3 Frame_Shift_Ins p.P672Afs*39 0.14 TCGA-F9-A7VF-01 3 194408012 194408012 T C FAM43A Missense_Mutation p.F153L 0.41 tolerated(0.08) probably_damaging(0.987) TCGA-F9-A7VF-01 3 195460180 195460180 A T MUC20 3'UTR 0.66 TCGA-F9-A7VF-01 3 51431071 51431071 C A RBM15B Silent p.I747I 0.59 TCGA-F9-A7VF-01 3 51431515 51431515 C G RBM15B 3'UTR 0.68 TCGA-F9-A7VF-01 3 52555381 52555381 C - STAB1 Frame_Shift_Del p.P1972Lfs*18 0.36 TCGA-F9-A7VF-01 3 9962215 9962215 G A IL17RC Missense_Mutation p.S240N 0.51 deleterious(0.03) benign(0.196) TCGA-F9-A7VF-01 4 11401470 11401470 A T HS3ST1 Missense_Mutation p.L54M 0.39 deleterious(0.02) probably_damaging(0.969) TCGA-F9-A7VF-01 4 1305935 1305935 G C MAEA Missense_Mutation p.V80L 0.32 tolerated(0.07) benign(0.002) TCGA-F9-A7VF-01 4 138452940 138452946 GTTTTTC CTTTTTTTT PCDH18 Frame_Shift_Ins p.N101Kfs*3 0.34 TCGA-F9-A7VF-01 4 152025383 152025383 T C RPS3A Silent p.P206P 0.38 TCGA-F9-A7VF-01 4 159634384 159634384 C A PPID Nonsense_Mutation p.E261* 0.43 TCGA-F9-A7VF-01 4 8229479 8229479 C T SH3TC1 Silent p.P686P 0.31 TCGA-F9-A7VF-01 4 84185397 84185397 C T COQ2 Silent p.K407K 0.35 TCGA-F9-A7VF-01 5 137271569 137271569 C G PKD2L2 Nonsense_Mutation p.Y585* 0.38 TCGA-F9-A7VF-01 5 176831557 176831557 C A F12 Missense_Mutation p.R248L 0.53 tolerated(0.07) benign(0.015) TCGA-F9-A7VF-01 6 31692649 31692649 A G C6orf25 Intron 0.86 TCGA-F9-A7VF-01 6 33638181 33638181 G T ITPR3 Missense_Mutation p.V757L 0.88 deleterious(0.04) benign(0.061) TCGA-F9-A7VF-01 7 100732116 100732116 C T TRIM56 Missense_Mutation p.P508L 0.32 deleterious(0) probably_damaging(0.999) TCGA-F9-A7VF-01 7 136700128 136700128 G A CHRM2 Silent p.E172E 0.24 TCGA-F9-A7VF-01 7 143885148 143885148 C T ARHGEF35 Missense_Mutation p.S110N 0.48 tolerated(0.17) benign(0.032) TCGA-F9-A7VF-01 7 18535878 18535878 T C HDAC9 5'Flank 0.31 TCGA-F9-A7VF-01 7 5567773 5567773 G A ACTB Silent p.I282I 0.30 TCGA-F9-A7VF-01 7 57529657 57529657 G A ZNF716 3'UTR 0.63 TCGA-F9-A7VF-01 7 92905642 92905642 C T CCDC132 Intron 0.20 TCGA-F9-A7VF-01 8 144990855 144990855 C A PLEC Missense_Mutation p.W4515C 0.52 probably_damaging(0.998) TCGA-F9-A7VF-01 9 123216128 123216128 C T CDK5RAP2 Missense_Mutation p.R800Q 0.36 tolerated(0.33) possibly_damaging(0.885) TCGA-F9-A7VF-01 9 134305606 134305606 T A PRRC2B Missense_Mutation p.D25E 0.46 deleterious(0) probably_damaging(0.999) TCGA-F9-A7VF-01 9 74828909 74828909 T A GDA Splice_Site p.X193_splice 0.42 TCGA-F9-A7VF-01 9 78710821 78710821 G C PCSK5 Missense_Mutation p.G304R 0.39 deleterious(0.01) probably_damaging(1) TCGA-F9-A7VF-01 9 78710822 78710822 G A PCSK5 Missense_Mutation p.G304D 0.38 deleterious(0) probably_damaging(1) TCGA-F9-A7VF-01 X 10535072 10535072 C - MID1 Frame_Shift_Del p.L173* 0.41 TCGA-F9-A7VF-01 X 119565189 119565190 - AT LAMP2 Intron 0.43 TCGA-F9-A7VF-01 X 15364334 15364334 T G FIGF Missense_Mutation p.K329T 0.71 tolerated(0.18) possibly_damaging(0.511) TCGA-F9-A8NY-01 10 126523347 126523347 C T FAM175B Missense_Mutation p.P352L 0.25 tolerated(0.6) benign(0.001) TCGA-F9-A8NY-01 10 60566346 60566347 - TT BICC1 Frame_Shift_Ins p.D730Lfs*9 0.16 TCGA-F9-A8NY-01 10 98715228 98715228 C T LCOR Missense_Mutation p.T284M 0.06 tolerated(0.22) benign(0.184) TCGA-F9-A8NY-01 11 62420735 62420735 C T INTS5 5'UTR 0.40 TCGA-F9-A8NY-01 11 94800483 94800483 G A SRSF8 Silent p.R31R 0.39 TCGA-F9-A8NY-01 12 112601434 112601434 A G HECTD4 Missense_Mutation p.I4124T 0.05 probably_damaging(0.941) TCGA-F9-A8NY-01 12 67675700 67675700 A G CAND1 Missense_Mutation p.T27A 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-F9-A8NY-01 12 76424606 76424606 G A PHLDA1 Nonsense_Mutation p.Q306* 0.29 TCGA-F9-A8NY-01 13 113714919 113714919 G A MCF2L Missense_Mutation p.A128T 0.07 deleterious(0) benign(0.098) TCGA-F9-A8NY-01 14 24653966 24653966 G A IPO4 Missense_Mutation p.T509M 0.31 tolerated(0.1) benign(0.014) TCGA-F9-A8NY-01 14 76107632 76107632 C T FLVCR2 Silent p.L483L 0.26 TCGA-F9-A8NY-01 14 96752216 96752216 G C ATG2B Missense_Mutation p.A2038G 0.31 deleterious(0.01) probably_damaging(0.973) TCGA-F9-A8NY-01 15 40383961 40383961 G A BMF 3'UTR 0.39 TCGA-F9-A8NY-01 15 44166102 44166102 C G FRMD5 Missense_Mutation p.S565T 0.39 tolerated(0.18) benign(0.075) TCGA-F9-A8NY-01 15 75653705 75653705 C T MAN2C1 Nonsense_Mutation p.W412* 0.42 TCGA-F9-A8NY-01 17 19552131 19552131 G A ALDH3A2 5'UTR 0.78 TCGA-F9-A8NY-01 17 38935785 38935785 A T KRT27 Missense_Mutation p.L314H 0.20 deleterious(0) probably_damaging(0.988) TCGA-F9-A8NY-01 17 72998179 72998179 G A CDR2L Missense_Mutation p.R121H 0.22 tolerated(0.54) possibly_damaging(0.642) TCGA-F9-A8NY-01 19 11664884 11664884 G A ELOF1 Silent p.R43R 0.37 TCGA-F9-A8NY-01 19 2987356 2987356 C T TLE6 Nonsense_Mutation p.Q182* 0.31 TCGA-F9-A8NY-01 1 110768794 110768794 C T KCNC4 Missense_Mutation p.R605W 0.47 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-F9-A8NY-01 1 120839624 120839624 G A FAM72B 5'UTR 0.07 TCGA-F9-A8NY-01 1 185267408 185267411 ACAA - IVNS1ABP Frame_Shift_Del p.F562Yfs*26 0.28 TCGA-F9-A8NY-01 1 36029001 36029001 C T NCDN Silent p.L528L 0.42 TCGA-F9-A8NY-01 1 84701058 84701058 G A PRKACB 3'UTR 0.33 TCGA-F9-A8NY-01 1 94668545 94668554 CAAGTAGAGG - ARHGAP29 Frame_Shift_Del p.P292Efs*13 0.13 TCGA-F9-A8NY-01 20 31644491 31644491 G A BPIFB3 Missense_Mutation p.E90K 0.36 tolerated(0.11) benign(0.069) TCGA-F9-A8NY-01 22 17072541 17072541 G A CCT8L2 Silent p.D300D 0.52 TCGA-F9-A8NY-01 2 10126281 10126281 A G GRHL1 Silent p.T380T 0.25 TCGA-F9-A8NY-01 2 20212199 20212199 G C MATN3 Missense_Mutation p.T65S 0.23 tolerated(1) benign(0) TCGA-F9-A8NY-01 2 70056932 70056932 C A GMCL1 5'UTR 0.20 TCGA-F9-A8NY-01 2 86348656 86348656 A G PTCD3 Missense_Mutation p.Y198C 0.34 deleterious(0.02) probably_damaging(0.995) TCGA-F9-A8NY-01 2 97559675 97559675 C T FAM178B Silent p.E588E 0.16 TCGA-F9-A8NY-01 3 105459395 105459395 G T CBLB Missense_Mutation p.T309N 0.24 deleterious(0) probably_damaging(1) TCGA-F9-A8NY-01 3 69112622 69112622 T C UBA3 Missense_Mutation p.I169V 0.33 tolerated(0.52) benign(0.024) TCGA-F9-A8NY-01 3 97598873 97598873 C T CRYBG3 Silent p.V363V 0.42 TCGA-F9-A8NY-01 4 151408963 151408963 C T LRBA Missense_Mutation p.D2169N 0.29 deleterious(0.02) probably_damaging(0.975) TCGA-F9-A8NY-01 4 189020257 189020257 G A TRIML2 Missense_Mutation p.R135C 0.34 tolerated(0.18) benign(0) TCGA-F9-A8NY-01 4 83350691 83350691 C T HNRNPDL Silent p.R51R 0.10 TCGA-F9-A8NY-01 5 140745680 140745680 G A PCDHGA5 Missense_Mutation p.D595N 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-F9-A8NY-01 5 142150297 142150297 C A ARHGAP26 5'UTR 0.14 TCGA-F9-A8NY-01 6 161512563 161512563 T G MAP3K4 Missense_Mutation p.F1042L 0.05 deleterious(0.04) probably_damaging(0.995) TCGA-F9-A8NY-01 6 43193850 43193850 C T DNPH1 Silent p.L99L 0.37 TCGA-F9-A8NY-01 6 44355567 44355567 C T CDC5L Nonsense_Mutation p.R3* 0.22 TCGA-F9-A8NY-01 7 107743597 107743597 C T LAMB4 Missense_Mutation p.V358M 0.44 deleterious(0.05) possibly_damaging(0.864) TCGA-F9-A8NY-01 7 135095338 135095338 T C CNOT4 Missense_Mutation p.N250D 0.33 tolerated(0.17) benign(0.008) TCGA-F9-A8NY-01 7 142378883 142378883 A C MTRNR2L6 3'Flank 0.26 TCGA-F9-A8NY-01 7 94540403 94540403 T G PPP1R9A Silent p.A326A 0.30 TCGA-F9-A8NY-01 8 133899367 133899367 G T TG Missense_Mutation p.A584S 0.25 tolerated(0.07) benign(0.152) TCGA-F9-A8NY-01 8 140743457 140743457 G T TRAPPC9 Silent p.G1196G 0.19 TCGA-F9-A8NY-01 9 114338818 114338818 G - PTGR1 Intron 0.47 TCGA-F9-A8NY-01 9 135545507 135545507 T A DDX31 Missense_Mutation p.S44C 0.42 deleterious_low_confidence(0.02) benign(0.002) TCGA-F9-A8NY-01 9 140356049 140356049 G T PNPLA7 Silent p.S1260S 0.38 TCGA-F9-A8NY-01 X 105153848 105153848 G C NRK Missense_Mutation p.E740Q 0.30 deleterious(0) probably_damaging(0.943) TCGA-F9-A8NY-01 X 108868336 108868336 C T KCNE1L 5'UTR 0.32 TCGA-F9-A8NY-01 X 152826209 152826211 TCT - ATP2B3 In_Frame_Del p.F973del 0.38 TCGA-F9-A8NY-01 X 21674122 21674122 G A KLHL34 Silent p.Y595Y 0.40 TCGA-F9-A8NY-01 X 53616526 53616526 A T HUWE1 Missense_Mutation p.L1481Q 0.34 probably_damaging(0.986) TCGA-F9-A8NY-01 X 77225038 77225038 G A PGAM4 Missense_Mutation p.A33V 0.33 tolerated(0.16) benign(0.003) TCGA-F9-A97G-01 10 117221517 117221517 C T ATRNL1 Missense_Mutation p.A1130V 0.23 deleterious(0.02) possibly_damaging(0.744) TCGA-F9-A97G-01 10 99361640 99361640 G A HOGA1 Missense_Mutation p.A243T 0.26 deleterious(0) possibly_damaging(0.87) TCGA-F9-A97G-01 11 10011141 10011146 AACTAG - SBF2 Splice_Site p.X433_splice 0.15 TCGA-F9-A97G-01 11 118402553 118402553 A G TMEM25 Missense_Mutation p.T13A 0.05 tolerated(0.15) benign(0.001) TCGA-F9-A97G-01 11 12534927 12534927 G A PARVA Intron 0.23 TCGA-F9-A97G-01 11 129793159 129793159 C G PRDM10 Missense_Mutation p.C677S 0.33 deleterious(0) probably_damaging(0.99) TCGA-F9-A97G-01 11 16812448 16812448 C A PLEKHA7 Silent p.S983S 0.19 TCGA-F9-A97G-01 11 64899012 64899012 G C SYVN1 Missense_Mutation p.S196C 0.13 deleterious(0.01) probably_damaging(0.94) TCGA-F9-A97G-01 11 71804574 71804574 C A LRTOMT 5'UTR 0.23 TCGA-F9-A97G-01 12 11138793 11138793 C T TAS2R50 Missense_Mutation p.V223I 0.15 tolerated(0.09) possibly_damaging(0.597) TCGA-F9-A97G-01 12 113900958 113900958 C A LHX5 3'UTR 0.31 TCGA-F9-A97G-01 12 4922072 4922072 T G KCNA6 3'UTR 0.23 TCGA-F9-A97G-01 12 88471552 88471552 T G CEP290 Silent p.I1836I 0.18 TCGA-F9-A97G-01 13 113479745 113479745 T A ATP11A Missense_Mutation p.S292T 0.20 tolerated(0.06) benign(0.34) TCGA-F9-A97G-01 13 72440446 72440446 G A DACH1 Silent p.S154S 0.11 TCGA-F9-A97G-01 14 35554933 35554940 GAAGAGAG - PPP2R3C Frame_Shift_Del p.S407Gfs*6 0.16 TCGA-F9-A97G-01 14 65208230 65208230 C G PLEKHG3 Silent p.L609L 0.22 TCGA-F9-A97G-01 14 89817056 89817056 C T FOXN3 Missense_Mutation p.V214M 0.17 tolerated(0.07) benign(0.313) TCGA-F9-A97G-01 15 25616011 25616011 C T UBE3A Missense_Mutation p.R440Q 0.19 deleterious(0.02) benign(0.217) TCGA-F9-A97G-01 15 39545591 39545591 C T C15orf54 3'UTR 0.04 TCGA-F9-A97G-01 15 39880740 39880740 G T THBS1 Missense_Mutation p.W495C 0.22 deleterious(0) benign(0.204) TCGA-F9-A97G-01 15 42445858 42445858 C T PLA2G4F Missense_Mutation p.D151N 0.29 tolerated(0.27) benign(0.008) TCGA-F9-A97G-01 15 99672909 99672909 A G SYNM Silent p.L1447L 0.22 TCGA-F9-A97G-01 16 11852437 11852437 T A ZC3H7A Intron 0.12 TCGA-F9-A97G-01 16 1470405 1470405 G A C16orf91 Missense_Mutation p.P238S 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-F9-A97G-01 16 30795810 30795810 G A ZNF629 5'UTR 0.24 TCGA-F9-A97G-01 16 81272433 81272433 G T BCMO1 5'UTR 0.18 TCGA-F9-A97G-01 16 847004 847006 TTG - CHTF18 In_Frame_Del p.I882_G883delinsR 0.12 TCGA-F9-A97G-01 17 32956193 32956193 G A TMEM132E Silent p.R346R 0.23 TCGA-F9-A97G-01 17 48433616 48433616 G T XYLT2 Silent p.R492R 0.22 TCGA-F9-A97G-01 17 48472322 48472322 C G LRRC59 Missense_Mutation p.D45H 0.17 deleterious(0) probably_damaging(1) TCGA-F9-A97G-01 18 48575090 48575090 A G SMAD4 Missense_Mutation p.Y95C 0.21 deleterious(0) probably_damaging(1) TCGA-F9-A97G-01 18 55021740 55021740 C T ST8SIA3 Missense_Mutation p.A96V 0.27 benign(0.113) TCGA-F9-A97G-01 19 10692495 10692495 G C AP1M2 Missense_Mutation p.I109M 0.19 deleterious(0) possibly_damaging(0.829) TCGA-F9-A97G-01 19 33481469 33481469 T C RHPN2 Missense_Mutation p.D584G 0.16 deleterious(0.04) benign(0.044) TCGA-F9-A97G-01 19 3827588 3827588 C T ZFR2 Missense_Mutation p.V306M 0.14 tolerated(0.24) benign(0.007) TCGA-F9-A97G-01 19 54611339 54611339 C T TFPT Silent p.P212P 0.22 TCGA-F9-A97G-01 1 110754435 110754435 A G KCNC4 Missense_Mutation p.Y105C 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-F9-A97G-01 1 119427569 119427569 G A TBX15 Missense_Mutation p.P426L 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-F9-A97G-01 1 151810577 151810577 G A C2CD4D Missense_Mutation p.P297S 0.18 tolerated(0.57) possibly_damaging(0.596) TCGA-F9-A97G-01 1 161228714 161228714 C T PCP4L1 5'UTR 0.31 TCGA-F9-A97G-01 1 180240574 180240574 A G LHX4 Missense_Mutation p.T171A 0.22 tolerated(0.05) probably_damaging(0.983) TCGA-F9-A97G-01 1 180240575 180240575 C T LHX4 Missense_Mutation p.T171I 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-F9-A97G-01 1 209880345 209880347 ATG - HSD11B1 In_Frame_Del p.D132del 0.22 TCGA-F9-A97G-01 1 22166446 22166446 G A HSPG2 Missense_Mutation p.T3193I 0.21 possibly_damaging(0.616) TCGA-F9-A97G-01 1 242511425 242511426 - T PLD5 Frame_Shift_Ins p.N103Kfs*5 0.21 TCGA-F9-A97G-01 1 24972473 24972473 A G SRRM1 Splice_Site p.X8_splice 0.20 TCGA-F9-A97G-01 1 35350632 35350632 G A DLGAP3 Silent p.N649N 0.13 TCGA-F9-A97G-01 1 41285146 41285146 T G KCNQ4 Splice_Site p.X278_splice 0.20 TCGA-F9-A97G-01 1 46532743 46532743 A - PIK3R3 Frame_Shift_Del p.L112* 0.16 TCGA-F9-A97G-01 1 47398241 47398241 G T CYP4A11 Intron 0.15 TCGA-F9-A97G-01 20 4680620 4680620 G T PRNP Missense_Mutation p.V252L 0.20 deleterious(0.03) unknown(0) TCGA-F9-A97G-01 20 4837510 4837510 C G SLC23A2 3'UTR 0.31 TCGA-F9-A97G-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.20 TCGA-F9-A97G-01 22 50321039 50321039 A C CRELD2 3'UTR 0.17 TCGA-F9-A97G-01 22 51159397 51159397 T C SHANK3 Missense_Mutation p.S1062P 0.27 probably_damaging(0.941) TCGA-F9-A97G-01 2 101883275 101883275 T C CNOT11 Missense_Mutation p.I391T 0.22 deleterious(0) probably_damaging(0.987) TCGA-F9-A97G-01 2 141272299 141272299 T G LRP1B Missense_Mutation p.K2731T 0.25 possibly_damaging(0.728) TCGA-F9-A97G-01 2 170134341 170134341 T A LRP2 Silent p.V562V 0.23 TCGA-F9-A97G-01 2 210818950 210818950 G A UNC80 Silent p.A2405A 0.19 TCGA-F9-A97G-01 2 219449436 219449436 G C RQCD1 Missense_Mutation p.G141A 0.22 deleterious(0.01) probably_damaging(0.982) TCGA-F9-A97G-01 2 89247114 89247114 C A IGKV1-5 Missense_Mutation p.G19V 0.26 deleterious(0.02) benign(0.231) TCGA-F9-A97G-01 3 119449132 119449132 A C MAATS1 Missense_Mutation p.E309A 0.18 deleterious(0.02) benign(0.093) TCGA-F9-A97G-01 3 122634444 122634444 C T SEMA5B Missense_Mutation p.G665S 0.31 deleterious(0.03) possibly_damaging(0.897) TCGA-F9-A97G-01 3 131188617 131188617 C T MRPL3 Missense_Mutation p.D247N 0.13 tolerated(0.1) benign(0.196) TCGA-F9-A97G-01 3 155199731 155199731 A T PLCH1 Missense_Mutation p.S1370T 0.23 tolerated_low_confidence(1) benign(0.254) TCGA-F9-A97G-01 3 169831155 169831155 A T PHC3 Silent p.I782I 0.20 TCGA-F9-A97G-01 3 58107208 58107208 C T FLNB Missense_Mutation p.S1035L 0.17 tolerated(0.61) benign(0.006) TCGA-F9-A97G-01 4 104116296 104116296 G A CENPE Missense_Mutation p.P151L 0.15 probably_damaging(1) TCGA-F9-A97G-01 4 25750008 25750017 AAGATTCTCT - SEL1L3 3'UTR 0.11 TCGA-F9-A97G-01 4 54362470 54362470 C A LNX1 Missense_Mutation p.R357L 0.26 deleterious(0) probably_damaging(0.999) TCGA-F9-A97G-01 4 651194 651194 A C PDE6B Missense_Mutation p.M438L 0.17 tolerated(0.31) benign(0.025) TCGA-F9-A97G-01 4 982757 982759 AGA - SLC26A1 In_Frame_Del p.I656_L657delinsM 0.24 TCGA-F9-A97G-01 5 127636522 127636522 G - FBN2 Frame_Shift_Del p.S2051Rfs*7 0.15 TCGA-F9-A97G-01 5 175740305 175740305 T G SIMC1 Intron 0.22 TCGA-F9-A97G-01 5 7897216 7897229 CTCATCTAAAGGTT - MTRR Frame_Shift_Del p.T630Ifs*55 0.19 TCGA-F9-A97G-01 5 82948645 82948645 T C HAPLN1 Splice_Site p.X34_splice 0.17 TCGA-F9-A97G-01 5 95759058 95759058 C T PCSK1 Missense_Mutation p.D168N 0.19 deleterious(0) probably_damaging(1) TCGA-F9-A97G-01 6 147105855 147105855 G T ADGB Missense_Mutation p.K1379N 0.19 deleterious(0) possibly_damaging(0.894) TCGA-F9-A97G-01 7 124387082 124387082 A T GPR37 Missense_Mutation p.F447I 0.25 deleterious(0) probably_damaging(1) TCGA-F9-A97G-01 7 43547666 43547672 ATGGCCT - HECW1 Frame_Shift_Del p.M1268Ifs*65 0.10 TCGA-F9-A97G-01 7 65441077 65441077 T C GUSB Silent p.Q279Q 0.26 TCGA-F9-A97G-01 7 75959110 75959110 A T YWHAG Silent p.A176A 0.14 TCGA-F9-A97G-01 7 77584376 77584384 TTTTAGTCT - PHTF2 3'UTR 0.12 TCGA-F9-A97G-01 8 142490515 142490515 C T MROH5 3'UTR 0.26 TCGA-F9-A97G-01 8 145726945 145726945 G T PPP1R16A Missense_Mutation p.G416W 0.18 deleterious(0.03) probably_damaging(0.995) TCGA-F9-A97G-01 9 111663801 111663801 T A IKBKAP Missense_Mutation p.N640Y 0.21 deleterious(0) probably_damaging(0.967) TCGA-F9-A97G-01 9 124929084 124929084 A G MORN5 Missense_Mutation p.T29A 0.18 deleterious(0.05) possibly_damaging(0.67) TCGA-F9-A97G-01 9 135277608 135277625 CAGAAAGCCAGGACTCCT - TTF1 In_Frame_Del p.E195_S200del 0.14 TCGA-F9-A97G-01 X 107453231 107453231 C - COL4A6 Frame_Shift_Del p.D173Ifs*23 0.30 TCGA-F9-A97G-01 X 73641736 73641736 C T SLC16A2 Silent p.T88T 0.35 TCGA-G7-6789-01 11 101937281 101937281 C G C11orf70 Missense_Mutation p.H112D 0.58 tolerated(1) benign(0) TCGA-G7-6789-01 12 29485566 29485566 T C FAR2 Silent p.L431L 0.45 TCGA-G7-6789-01 12 72680574 72680574 A G TRHDE Missense_Mutation p.Y298C 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-G7-6789-01 14 51132011 51132012 - A SAV1 Frame_Shift_Ins p.D141* 0.57 TCGA-G7-6789-01 17 78355391 78355391 C G RNF213 Silent p.G4614G 0.55 TCGA-G7-6789-01 18 33606995 33606995 C T RPRD1A Silent p.A219A 0.62 TCGA-G7-6789-01 19 40408648 40408648 G C FCGBP Silent p.P1397P 0.29 TCGA-G7-6789-01 1 115218255 115218255 G C AMPD1 Silent p.S558S 0.30 TCGA-G7-6789-01 1 179609042 179609042 A C TDRD5 Missense_Mutation p.H530P 0.16 deleterious(0.01) probably_damaging(0.921) TCGA-G7-6789-01 1 198678927 198678927 G - PTPRC Frame_Shift_Del p.S382Ifs*28 0.08 TCGA-G7-6789-01 1 41012446 41012446 A G ZNF684 Missense_Mutation p.R151G 0.64 tolerated(0.15) benign(0.009) TCGA-G7-6789-01 1 74905226 74905226 T G TNNI3K Missense_Mutation p.I745S 0.40 tolerated(0.79) benign(0.049) TCGA-G7-6789-01 2 113308552 113308559 CTTTCTTC - POLR1B Frame_Shift_Del p.L247Gfs*5 0.23 TCGA-G7-6789-01 2 233272617 233272617 G A ALPPL2 Missense_Mutation p.A180T 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-G7-6789-01 2 74702509 74702509 C T CCDC142 Missense_Mutation p.E540K 0.20 deleterious(0.03) probably_damaging(0.99) TCGA-G7-6789-01 3 52422876 52422876 C T DNAH1 Silent p.L3140L 0.68 TCGA-G7-6789-01 4 42146005 42146005 C T BEND4 Missense_Mutation p.R165Q 0.50 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-G7-6789-01 4 90168888 90168888 G T GPRIN3 3'UTR 0.51 TCGA-G7-6789-01 6 35051232 35051232 C A ANKS1A Silent p.I982I 0.66 TCGA-G7-6789-01 7 107415276 107415276 T G SLC26A3 Missense_Mutation p.K573N 0.44 deleterious(0) probably_damaging(0.994) TCGA-G7-6789-01 7 142965268 142965268 C T GSTK1 Missense_Mutation p.H264Y 0.20 tolerated(0.52) benign(0.001) TCGA-G7-6789-01 7 90894984 90894984 G T FZD1 Silent p.P263P 0.45 TCGA-G7-6789-01 9 134350415 134350415 G C PRRC2B Missense_Mutation p.G967R 0.55 tolerated(0.17) benign(0.03) TCGA-G7-6789-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.70 TCGA-G7-6789-01 X 115573956 115573956 G A SLC6A14 Missense_Mutation p.E150K 0.59 tolerated(0.85) benign(0.003) TCGA-G7-6789-01 X 8768226 8768226 G A FAM9A 5'UTR 0.25 TCGA-G7-6790-01 10 64968980 64968980 A T JMJD1C Missense_Mutation p.W904R 0.42 deleterious(0) probably_damaging(0.999) TCGA-G7-6790-01 11 40136275 40136275 A C LRRC4C Missense_Mutation p.M523R 0.26 deleterious(0) probably_damaging(0.979) TCGA-G7-6790-01 11 44105011 44105011 T C ACCS Missense_Mutation p.L431P 0.19 deleterious(0) probably_damaging(0.999) TCGA-G7-6790-01 12 121437343 121437343 C T HNF1A Nonsense_Mutation p.Q561* 0.31 TCGA-G7-6790-01 12 49434235 49434235 C T KMT2D Missense_Mutation p.V2440I 0.33 probably_damaging(0.987) TCGA-G7-6790-01 12 56115126 56115126 T C RDH5 Missense_Mutation p.F53S 0.27 deleterious(0) possibly_damaging(0.889) TCGA-G7-6790-01 12 58120789 58120789 C T AGAP2 Missense_Mutation p.A1102T 0.32 deleterious(0) benign(0.204) TCGA-G7-6790-01 12 58142137 58142137 A G TSPAN31 3'Flank 0.28 TCGA-G7-6790-01 13 107220278 107220278 G A ARGLU1 5'UTR 0.64 TCGA-G7-6790-01 13 43463356 43463356 C T EPSTI1 Missense_Mutation p.R324K 0.57 tolerated_low_confidence(1) benign(0.002) TCGA-G7-6790-01 13 43463357 43463357 T A EPSTI1 Missense_Mutation p.R324W 0.57 deleterious_low_confidence(0.02) benign(0.122) TCGA-G7-6790-01 13 52439743 52439743 C T CCDC70 Missense_Mutation p.H77Y 0.44 deleterious(0.03) benign(0.073) TCGA-G7-6790-01 13 53418949 53418949 A T PCDH8 Missense_Mutation p.F987I 0.43 deleterious(0.01) probably_damaging(0.92) TCGA-G7-6790-01 14 56107681 56107681 C T KTN1 Nonsense_Mutation p.Q672* 0.31 TCGA-G7-6790-01 15 68631978 68631978 C G ITGA11 Missense_Mutation p.G379A 0.23 deleterious(0.01) possibly_damaging(0.899) TCGA-G7-6790-01 15 76673781 76673781 C T SCAPER Missense_Mutation p.V1215M 0.23 deleterious(0) probably_damaging(0.962) TCGA-G7-6790-01 16 17252766 17252766 C G XYLT1 Missense_Mutation p.R430S 0.54 deleterious(0.01) possibly_damaging(0.458) TCGA-G7-6790-01 16 27457325 27457325 C A IL21R Intron 0.20 TCGA-G7-6790-01 16 67942590 67942590 C T PSKH1 5'UTR 0.37 TCGA-G7-6790-01 17 10227379 10227379 A T MYH13 Nonsense_Mutation p.L965* 0.64 TCGA-G7-6790-01 17 10309460 10309460 T C MYH8 Missense_Mutation p.E777G 0.52 deleterious(0.01) probably_damaging(1) TCGA-G7-6790-01 17 26459690 26459690 T - NLK Frame_Shift_Del p.F212Lfs*10 0.26 TCGA-G7-6790-01 17 37368584 37368584 C T STAC2 Silent p.K399K 0.24 TCGA-G7-6790-01 17 62496004 62496005 - TA DDX5 3'UTR 0.34 TCGA-G7-6790-01 19 11113781 11113781 G C SMARCA4 Missense_Mutation p.G630A 0.25 possibly_damaging(0.699) TCGA-G7-6790-01 19 19431865 19431865 G T MAU2 Missense_Mutation p.R66L 0.28 tolerated(0.13) benign(0.333) TCGA-G7-6790-01 19 38990577 38990577 G A RYR1 Missense_Mutation p.R2415Q 0.35 benign(0.031) TCGA-G7-6790-01 19 50764757 50764757 A G MYH14 Missense_Mutation p.N817S 0.27 tolerated(0.08) benign(0.069) TCGA-G7-6790-01 19 56459545 56459545 C A NLRP8 Missense_Mutation p.P93T 0.24 deleterious(0) probably_damaging(1) TCGA-G7-6790-01 19 59027831 59027831 C G ZBTB45 Missense_Mutation p.E404Q 0.28 tolerated(0.26) benign(0.02) TCGA-G7-6790-01 19 5914495 5914495 G T CAPS Silent p.L26L 0.38 TCGA-G7-6790-01 19 6709834 6709834 T G C3 Missense_Mutation p.Q569P 0.25 tolerated(0.27) benign(0.005) TCGA-G7-6790-01 19 757398 757398 C A MISP Missense_Mutation p.A151E 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-G7-6790-01 19 7755293 7755293 T A FCER2 Missense_Mutation p.Q207L 0.31 deleterious(0) probably_damaging(0.935) TCGA-G7-6790-01 1 110738291 110738291 T A SLC6A17 Missense_Mutation p.Y526N 0.46 deleterious(0) probably_damaging(0.996) TCGA-G7-6790-01 1 155148034 155148034 C G TRIM46 Missense_Mutation p.S79C 0.20 tolerated(0.09) probably_damaging(0.976) TCGA-G7-6790-01 1 16332451 16332451 G C C1orf64 Silent p.T40T 0.26 TCGA-G7-6790-01 1 169510915 169510916 - TT F5 Frame_Shift_Ins p.M1138Kfs*34 0.27 TCGA-G7-6790-01 1 173916659 173916660 GT - RC3H1 Frame_Shift_Del p.T862Qfs*2 0.20 TCGA-G7-6790-01 1 173962182 173962182 C T RC3H1 5'UTR 0.16 TCGA-G7-6790-01 1 38226980 38226980 C T EPHA10 Intron 0.22 TCGA-G7-6790-01 1 65330541 65330541 A T JAK1 Missense_Mutation p.F369I 0.34 deleterious(0) possibly_damaging(0.804) TCGA-G7-6790-01 20 34092361 34092361 A G CEP250 Missense_Mutation p.Q2055R 0.29 benign(0.001) TCGA-G7-6790-01 20 34778270 34778270 C A EPB41L1 Silent p.V366V 0.20 TCGA-G7-6790-01 20 48713266 48713266 T C UBE2V1 Silent p.E61E 0.29 TCGA-G7-6790-01 20 49510230 49510230 A T ADNP Missense_Mutation p.Y341N 0.28 deleterious(0.04) benign(0.045) TCGA-G7-6790-01 21 46596347 46596347 G A ADARB1 Missense_Mutation p.R244H 0.38 deleterious(0.04) probably_damaging(0.992) TCGA-G7-6790-01 22 21272259 21272259 G C CRKL Missense_Mutation p.A13P 0.19 deleterious(0) unknown(0) TCGA-G7-6790-01 22 36595420 36595420 A G APOL4 Missense_Mutation p.V16A 0.28 tolerated(0.08) benign(0.001) TCGA-G7-6790-01 2 10130855 10130855 G A GRHL1 Missense_Mutation p.R434Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-G7-6790-01 2 11758729 11758729 A G GREB1 Missense_Mutation p.Q1243R 0.06 tolerated(0.1) benign(0.005) TCGA-G7-6790-01 2 15691634 15691634 A G NBAS Missense_Mutation p.I121T 0.28 tolerated(0.06) benign(0.013) TCGA-G7-6790-01 2 171687570 171687570 C T GAD1 Silent p.L139L 0.50 TCGA-G7-6790-01 2 176794673 176794673 T G KIAA1715 3'UTR 0.30 TCGA-G7-6790-01 2 179419674 179419674 A G TTN Silent p.D29504D 0.56 TCGA-G7-6790-01 2 179650834 179650834 G C TTN Missense_Mutation p.T704R 0.53 TCGA-G7-6790-01 2 185801068 185801068 A G ZNF804A Silent p.Q315Q 0.63 TCGA-G7-6790-01 2 218938568 218938568 A T RUFY4 Missense_Mutation p.Q187L 0.15 deleterious(0.01) benign(0.4) TCGA-G7-6790-01 2 55812212 55812212 A G SMEK2 Missense_Mutation p.M403T 0.23 deleterious(0) benign(0.003) TCGA-G7-6790-01 3 127379599 127379599 T A PODXL2 Nonsense_Mutation p.L243* 0.22 TCGA-G7-6790-01 3 142123863 142123863 C G XRN1 Missense_Mutation p.R590T 0.42 tolerated(0.05) benign(0.038) TCGA-G7-6790-01 4 103225511 103225511 T C SLC39A8 Missense_Mutation p.H268R 0.32 tolerated(0.49) benign(0.124) TCGA-G7-6790-01 4 185686012 185686012 G A ACSL1 Missense_Mutation p.T476I 0.28 tolerated(0.08) benign(0.041) TCGA-G7-6790-01 4 48578146 48578146 T C FRYL Silent p.A874A 0.29 TCGA-G7-6790-01 4 48578147 48578147 G T FRYL Missense_Mutation p.A874E 0.29 deleterious(0.01) benign(0.104) TCGA-G7-6790-01 4 48578148 48578148 C T FRYL Missense_Mutation p.A874T 0.28 deleterious(0.04) benign(0.003) TCGA-G7-6790-01 4 77675996 77675996 C A SHROOM3 Missense_Mutation p.L1454M 0.36 tolerated(0.08) possibly_damaging(0.646) TCGA-G7-6790-01 5 138266342 138266342 C T CTNNA1 Nonsense_Mutation p.R731* 0.40 TCGA-G7-6790-01 5 156590094 156590094 T A FAM71B Silent p.A394A 0.38 TCGA-G7-6790-01 6 26021008 26021008 C T HIST1H3A Silent p.C97C 0.23 TCGA-G7-6790-01 6 3123907 3123927 GCCAAAGTGGCTGTGAATGGC - BPHL In_Frame_Del p.A42_G48del 0.18 TCGA-G7-6790-01 6 35437266 35437267 - A RPL10A Frame_Shift_Ins p.L93Tfs*5 0.26 TCGA-G7-6790-01 6 37442389 37442389 A G CMTR1 Silent p.L637L 0.28 TCGA-G7-6790-01 7 104717426 104717426 T G KMT2E Missense_Mutation p.I262S 0.43 tolerated(0.08) benign(0.227) TCGA-G7-6790-01 7 45747951 45747951 T C ADCY1 Silent p.A940A 0.51 TCGA-G7-6790-01 7 99746575 99746575 C - LAMTOR4 5'UTR 0.23 TCGA-G7-6790-01 8 121237425 121237425 A T COL14A1 Silent p.S612S 0.24 TCGA-G7-6790-01 8 124448833 124448833 G T WDYHV1 Missense_Mutation p.Q125H 0.27 deleterious(0.01) possibly_damaging(0.608) TCGA-G7-6790-01 9 136305491 136305491 G C ADAMTS13 Missense_Mutation p.V605L 0.37 deleterious(0.02) possibly_damaging(0.905) TCGA-G7-6790-01 9 17332674 17332674 G A CNTLN Silent p.K530K 0.24 TCGA-G7-6790-01 9 32448942 32448942 A T ACO1 Missense_Mutation p.N807Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-G7-6790-01 9 86585225 86585225 T A HNRNPK Nonsense_Mutation p.K405* 0.34 TCGA-G7-6790-01 9 94484881 94484881 C T ROR2 3'UTR 0.27 TCGA-G7-6790-01 9 94877626 94877626 A T SPTLC1 Silent p.V9V 0.17 TCGA-G7-6790-01 9 99404028 99404028 A T AAED1 3'UTR 0.26 TCGA-G7-6790-01 X 152937464 152937464 A T PNCK Silent p.G178G 0.50 TCGA-G7-6792-01 10 101911987 101911987 A G ERLIN1 Silent p.Y316Y 0.40 TCGA-G7-6792-01 10 134188858 134188858 T A LRRC27 3'UTR 0.30 TCGA-G7-6792-01 11 7669667 7669667 T C PPFIBP2 Missense_Mutation p.W566R 0.39 deleterious(0) probably_damaging(1) TCGA-G7-6792-01 12 102159058 102159058 A - GNPTAB Frame_Shift_Del p.V546Gfs*26 0.23 TCGA-G7-6792-01 12 10539567 10539567 C T KLRK1 Missense_Mutation p.S28N 0.33 tolerated(0.31) benign(0.066) TCGA-G7-6792-01 12 109692084 109692084 C T ACACB Silent p.L2037L 0.39 TCGA-G7-6792-01 12 27468238 27468238 C A STK38L Missense_Mutation p.N264K 0.24 tolerated(0.11) possibly_damaging(0.507) TCGA-G7-6792-01 12 53344644 53344644 A G KRT18 Missense_Mutation p.E204G 0.24 deleterious(0) probably_damaging(0.911) TCGA-G7-6792-01 12 75895546 75895546 T C KRR1 Silent p.A320A 0.28 TCGA-G7-6792-01 14 22409618 22409618 C T TRAV9-2 Silent p.A36A 0.25 TCGA-G7-6792-01 15 43024004 43024004 C T CDAN1 Missense_Mutation p.G518D 0.29 tolerated(0.11) possibly_damaging(0.559) TCGA-G7-6792-01 15 63414861 63414861 G - LACTB Frame_Shift_Del p.V129Lfs*5 0.29 TCGA-G7-6792-01 16 15130101 15130101 C A PDXDC1 Nonsense_Mutation p.S779* 0.30 TCGA-G7-6792-01 16 2138135 2138135 G A TSC2 Missense_Mutation p.A1719T 0.35 tolerated(0.06) possibly_damaging(0.763) TCGA-G7-6792-01 16 4731570 4731570 C A MGRN1 Missense_Mutation p.P384H 0.32 deleterious(0) probably_damaging(0.951) TCGA-G7-6792-01 17 37817259 37817259 G T STARD3 Nonsense_Mutation p.E354* 0.43 TCGA-G7-6792-01 17 76133427 76133427 T G TMC8 Silent p.V413V 0.38 TCGA-G7-6792-01 18 43464597 43464598 - AA EPG5 Frame_Shift_Ins p.M1764Sfs*4 0.29 TCGA-G7-6792-01 19 11447891 11447891 T A RAB3D Missense_Mutation p.K62M 0.32 deleterious(0) probably_damaging(0.986) TCGA-G7-6792-01 1 112303729 112303729 T G DDX20 Missense_Mutation p.F315C 0.39 deleterious(0) probably_damaging(0.999) TCGA-G7-6792-01 1 11771907 11771907 G A DRAXIN Splice_Site p.X215_splice 0.23 TCGA-G7-6792-01 1 155912175 155912175 G A RXFP4 Silent p.L225L 0.09 TCGA-G7-6792-01 1 205132071 205132071 G A DSTYK Silent p.L541L 0.43 TCGA-G7-6792-01 1 226075314 226075314 G A LEFTY1 Silent p.G174G 0.40 TCGA-G7-6792-01 1 230841791 230841791 C T AGT Missense_Mutation p.E338K 0.37 tolerated(1) benign(0.009) TCGA-G7-6792-01 1 240637474 240637474 A T FMN2 3'UTR 0.30 TCGA-G7-6792-01 20 23548869 23548869 G T CST9L Silent p.I73I 0.29 TCGA-G7-6792-01 20 3016489 3016489 G T PTPRA Silent p.V700V 0.28 TCGA-G7-6792-01 2 20232895 20232895 G A LAPTM4A 3'UTR 0.38 TCGA-G7-6792-01 2 219029397 219029397 G C CXCR1 Missense_Mutation p.P180A 0.34 tolerated(0.15) benign(0.021) TCGA-G7-6792-01 2 219029403 219029403 A T CXCR1 Missense_Mutation p.Y178N 0.35 deleterious(0) benign(0.012) TCGA-G7-6792-01 3 38009318 38009318 C G CTDSPL Missense_Mutation p.P124R 0.25 deleterious(0) probably_damaging(0.985) TCGA-G7-6792-01 3 46008824 46008824 C T FYCO1 Missense_Mutation p.A668T 0.43 tolerated(0.32) benign(0.382) TCGA-G7-6792-01 4 159825696 159825696 A G FNIP2 Silent p.%3D 0.36 TCGA-G7-6792-01 5 132334373 132334373 A G ZCCHC10 Missense_Mutation p.S139P 0.25 deleterious_low_confidence(0) unknown(0) TCGA-G7-6792-01 5 145610424 145610424 C A RBM27 Missense_Mutation p.S265Y 0.39 deleterious(0.02) benign(0.341) TCGA-G7-6792-01 5 149677576 149677576 G A ARSI Missense_Mutation p.S304L 0.41 tolerated(0.12) benign(0.052) TCGA-G7-6792-01 5 176830985 176830985 G A F12 Silent p.G375G 0.52 TCGA-G7-6792-01 6 97344647 97344647 A G NDUFAF4 Silent p.D71D 0.28 TCGA-G7-6792-01 7 132709362 132709362 T A CHCHD3 Missense_Mutation p.R65S 0.10 tolerated(0.06) benign(0.029) TCGA-G7-6792-01 7 149416749 149416749 C T KRBA1 Missense_Mutation p.T7M 0.22 tolerated(0.09) probably_damaging(0.988) TCGA-G7-6792-01 8 133931710 133931710 T G TG Missense_Mutation p.C1490G 0.39 deleterious(0) probably_damaging(1) TCGA-G7-6793-01 10 15688933 15688933 G A ITGA8 Silent p.D373D 0.20 TCGA-G7-6793-01 10 16916468 16916468 G T CUBN Silent p.I3047I 0.26 TCGA-G7-6793-01 10 99327795 99327795 G A UBTD1 Silent p.K65K 0.14 TCGA-G7-6793-01 11 108380880 108380880 C T EXPH5 Nonsense_Mutation p.W1785* 0.42 TCGA-G7-6793-01 11 113140831 113140831 C T NCAM1 Intron 0.32 TCGA-G7-6793-01 11 55606711 55606711 G A OR5D16 Missense_Mutation p.A162T 0.33 tolerated(1) benign(0.001) TCGA-G7-6793-01 11 66049735 66049735 A G CNIH2 Missense_Mutation p.I29M 0.24 deleterious(0) possibly_damaging(0.892) TCGA-G7-6793-01 12 104681083 104681083 G A TXNRD1 Intron 0.29 TCGA-G7-6793-01 12 122016841 122016841 T C KDM2B Missense_Mutation p.D46G 0.04 tolerated(0.38) benign(0.003) TCGA-G7-6793-01 12 52882316 52882316 G A KRT6A Missense_Mutation p.A407V 0.32 deleterious(0.01) possibly_damaging(0.542) TCGA-G7-6793-01 14 64694429 64694429 C - SYNE2 3'Flank 0.25 TCGA-G7-6793-01 15 22382930 22382930 T C OR4N4 Missense_Mutation p.F153S 0.12 deleterious(0) probably_damaging(0.976) TCGA-G7-6793-01 16 18856756 18856756 T C SMG1 Missense_Mutation p.K2072E 0.53 deleterious(0) benign(0.097) TCGA-G7-6793-01 16 20376785 20376785 G A PDILT Silent p.N398N 0.23 TCGA-G7-6793-01 16 2284711 2284711 C T E4F1 Missense_Mutation p.P574L 0.35 deleterious(0) probably_damaging(0.988) TCGA-G7-6793-01 19 55685920 55685920 C T SYT5 Missense_Mutation p.A309T 0.24 deleterious(0.02) benign(0.042) TCGA-G7-6793-01 19 58049607 58049607 C G ZNF549 Missense_Mutation p.T412R 0.15 deleterious(0) probably_damaging(0.993) TCGA-G7-6793-01 19 58101980 58101980 G C ZIK1 Missense_Mutation p.W267C 0.16 deleterious(0) probably_damaging(0.983) TCGA-G7-6793-01 1 157667660 157667660 G A FCRL3 Silent p.V116V 0.37 TCGA-G7-6793-01 1 19186021 19186021 A T TAS1R2 Missense_Mutation p.M45K 0.14 deleterious(0.01) benign(0.076) TCGA-G7-6793-01 1 203455866 203455866 C A PRELP Missense_Mutation p.L336I 0.27 tolerated(0.22) benign(0.005) TCGA-G7-6793-01 1 90180336 90180336 T C LRRC8C Missense_Mutation p.I736T 0.07 deleterious(0) benign(0.034) TCGA-G7-6793-01 1 9782066 9782066 G T PIK3CD Missense_Mutation p.D697Y 0.25 deleterious(0.01) probably_damaging(0.928) TCGA-G7-6793-01 21 17138432 17138432 C G USP25 Nonsense_Mutation p.Y80* 0.05 TCGA-G7-6793-01 2 113513875 113513875 C T CKAP2L Missense_Mutation p.S358N 0.38 deleterious(0.04) benign(0.001) TCGA-G7-6793-01 2 179425266 179425266 A G TTN Silent p.Y28531Y 0.35 TCGA-G7-6793-01 2 182399601 182399601 T C ITGA4 Missense_Mutation p.I981T 0.27 deleterious(0) possibly_damaging(0.662) TCGA-G7-6793-01 2 202671373 202671373 T C CDK15 5'UTR 0.32 TCGA-G7-6793-01 2 204058575 204058575 G T NBEAL1 Missense_Mutation p.D2298Y 0.28 deleterious(0) possibly_damaging(0.823) TCGA-G7-6793-01 3 111918287 111918287 C T SLC9C1 Missense_Mutation p.A802T 0.50 tolerated(0.06) benign(0.139) TCGA-G7-6793-01 4 40103811 40103811 A G N4BP2 Missense_Mutation p.I116V 0.28 tolerated(0.62) benign(0.009) TCGA-G7-6793-01 6 132649712 132649712 C G MOXD1 Missense_Mutation p.G229R 0.33 deleterious(0) probably_damaging(0.998) TCGA-G7-6793-01 8 48508505 48508506 - AGC SPIDR In_Frame_Ins p.S411dup 0.18 TCGA-G7-6793-01 X 135825892 135825892 A T ARHGEF6 Missense_Mutation p.F171L 0.29 deleterious(0) probably_damaging(0.992) TCGA-G7-6793-01 X 16864059 16864059 A G RBBP7 Silent p.F411F 0.28 TCGA-G7-6793-01 X 54777529 54777529 G A ITIH6 Missense_Mutation p.R1213C 0.34 tolerated(0.22) benign(0.003) TCGA-G7-6793-01 X 56259728 56259728 G A KLF8 5'UTR 0.08 TCGA-G7-6793-01 X 70349198 70349198 G T MED12 Missense_Mutation p.D1204Y 0.23 probably_damaging(1) TCGA-G7-6795-01 10 111860443 111860443 C G ADD3 Missense_Mutation p.T11S 0.38 tolerated(0.07) possibly_damaging(0.77) TCGA-G7-6795-01 11 10647666 10647666 C G MRVI1 Silent p.R405R 0.37 TCGA-G7-6795-01 11 108032024 108032024 A G NPAT Silent p.S1263S 0.40 TCGA-G7-6795-01 11 133790126 133790126 C A IGSF9B Missense_Mutation p.G1165V 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.576) TCGA-G7-6795-01 11 133794760 133794760 C T IGSF9B Missense_Mutation p.D692N 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-G7-6795-01 11 18309441 18309441 G A HPS5 Missense_Mutation p.R854W 0.45 deleterious(0) probably_damaging(0.98) TCGA-G7-6795-01 12 1863436 1863436 A G ADIPOR2 5'UTR 0.05 TCGA-G7-6795-01 12 49717751 49717751 A C TROAP Missense_Mutation p.N90H 0.23 deleterious(0.01) possibly_damaging(0.893) TCGA-G7-6795-01 12 56118170 56118170 A T RDH5 Silent p.R266R 0.27 TCGA-G7-6795-01 12 57114205 57114205 G A NACA Missense_Mutation p.T370I 0.56 tolerated_low_confidence(0.07) benign(0.001) TCGA-G7-6795-01 12 57918527 57918527 C A MBD6 Silent p.S46S 0.33 TCGA-G7-6795-01 15 43299382 43299382 C T UBR1 Missense_Mutation p.E1104K 0.36 deleterious(0) probably_damaging(0.998) TCGA-G7-6795-01 15 44951365 44951365 A T SPG11 Silent p.L193L 0.36 TCGA-G7-6795-01 16 67184131 67184131 G C B3GNT9 Silent p.R86R 0.33 TCGA-G7-6795-01 16 71392663 71392663 G T CALB2 5'UTR 0.58 TCGA-G7-6795-01 16 72992638 72992638 C T ZFHX3 Silent p.E469E 0.24 TCGA-G7-6795-01 17 17030034 17030034 G A MPRIP Missense_Mutation p.G96S 0.29 deleterious(0) probably_damaging(1) TCGA-G7-6795-01 17 27251080 27251080 T A PHF12 Missense_Mutation p.I188F 0.59 tolerated(0.06) benign(0.014) TCGA-G7-6795-01 17 42882624 42882624 C G GJC1 Missense_Mutation p.E188Q 0.36 deleterious(0) probably_damaging(0.992) TCGA-G7-6795-01 17 48190273 48190273 T G SAMD14 Missense_Mutation p.E441A 0.38 deleterious(0) unknown(0) TCGA-G7-6795-01 17 48669448 48669448 G A CACNA1G Missense_Mutation p.A969T 0.41 tolerated(0.31) benign(0.007) TCGA-G7-6795-01 17 56060465 56060465 G T VEZF1 Missense_Mutation p.T108N 0.41 deleterious(0.04) possibly_damaging(0.878) TCGA-G7-6795-01 18 46645145 46645145 G A DYM Missense_Mutation p.S572L 0.32 deleterious(0.02) possibly_damaging(0.675) TCGA-G7-6795-01 19 17370111 17370111 C - USHBP1 Frame_Shift_Del p.A345Pfs*31 0.33 TCGA-G7-6795-01 19 18538728 18538728 G A SSBP4 Missense_Mutation p.C72Y 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-G7-6795-01 19 19218750 19218750 G T SLC25A42 Missense_Mutation p.G182V 0.38 deleterious(0) probably_damaging(1) TCGA-G7-6795-01 19 2408353 2408353 G A TMPRSS9 Splice_Site p.X247_splice 0.11 TCGA-G7-6795-01 19 24310237 24310237 A T ZNF254 Nonsense_Mutation p.R479* 0.26 TCGA-G7-6795-01 19 38774304 38774304 G T SPINT2 Silent p.R48R 0.28 TCGA-G7-6795-01 19 41712375 41712375 C T CYP2S1 Silent p.S499S 0.09 TCGA-G7-6795-01 19 57037032 57037032 A G ZNF471 Silent p.Q532Q 0.33 TCGA-G7-6795-01 1 114443052 114443052 T G AP4B1 Intron 0.36 TCGA-G7-6795-01 1 155630357 155630357 G A YY1AP1 Silent p.L586L 0.30 TCGA-G7-6795-01 1 156347130 156347130 G C RHBG Missense_Mutation p.G76R 0.31 deleterious(0) probably_damaging(0.976) TCGA-G7-6795-01 1 52819228 52819228 G C CC2D1B Missense_Mutation p.T847S 0.45 deleterious(0.03) possibly_damaging(0.651) TCGA-G7-6795-01 1 98058809 98058809 T A DPYD Nonsense_Mutation p.K365* 0.37 TCGA-G7-6795-01 20 20491913 20491913 A T RALGAPA2 Nonsense_Mutation p.L1638* 0.50 TCGA-G7-6795-01 20 23017198 23017198 A T SSTR4 Missense_Mutation p.M360L 0.06 tolerated(0.28) benign(0) TCGA-G7-6795-01 20 31761923 31761923 C T BPIFA2 Missense_Mutation p.A114V 0.28 tolerated(1) benign(0.284) TCGA-G7-6795-01 2 16082320 16082321 - G MYCN Frame_Shift_Ins p.E47Gfs*8 0.40 TCGA-G7-6795-01 2 170843280 170843281 - T UBR3 Frame_Shift_Ins p.V1255Cfs*14 0.24 TCGA-G7-6795-01 2 207006722 207006724 AGA - NDUFS1 In_Frame_Del p.L416del 0.19 TCGA-G7-6795-01 2 21260848 21260848 G A APOB Silent p.A173A 0.58 TCGA-G7-6795-01 2 218713795 218713795 G A TNS1 Missense_Mutation p.T357M 0.20 deleterious(0.01) benign(0.065) TCGA-G7-6795-01 2 234622277 234622277 A G UGT1A5 Missense_Mutation p.M214V 0.54 tolerated(0.51) benign(0.021) TCGA-G7-6795-01 2 238672176 238672176 A - LRRFIP1 Frame_Shift_Del p.E608Kfs*4 0.13 TCGA-G7-6795-01 2 24051776 24051776 C A ATAD2B Missense_Mutation p.D588Y 0.43 deleterious(0) possibly_damaging(0.825) TCGA-G7-6795-01 2 24509153 24509155 TTC - ITSN2 In_Frame_Del p.E597del 0.23 TCGA-G7-6795-01 2 27291539 27291539 A G AGBL5 Missense_Mutation p.E761G 0.29 tolerated_low_confidence(0.11) benign(0.021) TCGA-G7-6795-01 2 27876243 27876243 T A SUPT7L 3'UTR 0.33 TCGA-G7-6795-01 2 9645412 9645412 T G ADAM17 Missense_Mutation p.K476T 0.46 deleterious(0.05) benign(0.115) TCGA-G7-6795-01 3 133329894 133329895 - CT TOPBP1 Frame_Shift_Ins p.R1376Kfs*67 0.30 TCGA-G7-6795-01 3 140397032 140397032 T C TRIM42 5'UTR 0.48 TCGA-G7-6795-01 3 152553966 152553966 A G P2RY1 Missense_Mutation p.H132R 0.33 deleterious(0) probably_damaging(0.994) TCGA-G7-6795-01 3 183547361 183547361 G T PARL 3'UTR 0.38 TCGA-G7-6795-01 3 49721384 49721384 G A APEH 3'UTR 0.39 TCGA-G7-6795-01 3 63466530 63466530 C T SYNPR Missense_Mutation p.A36V 0.39 deleterious(0) probably_damaging(0.986) TCGA-G7-6795-01 3 77542437 77542437 T G ROBO2 Missense_Mutation p.L253R 0.06 deleterious(0) probably_damaging(0.928) TCGA-G7-6795-01 4 169317122 169317122 C T DDX60L Silent p.R1215R 0.49 TCGA-G7-6795-01 4 17586652 17586652 A G LAP3 Silent p.A199A 0.23 TCGA-G7-6795-01 4 17586653 17586653 C A LAP3 Missense_Mutation p.R200S 0.23 deleterious(0) probably_damaging(1) TCGA-G7-6795-01 4 8230107 8230107 C T SH3TC1 Silent p.L896L 0.51 TCGA-G7-6795-01 4 85569852 85569852 A G CDS1 3'UTR 0.19 TCGA-G7-6795-01 5 141524143 141524143 C A NDFIP1 Silent p.L190L 0.25 TCGA-G7-6795-01 5 141524144 141524144 C G NDFIP1 Missense_Mutation p.L191V 0.24 deleterious(0.01) possibly_damaging(0.906) TCGA-G7-6795-01 5 156484974 156484974 A - HAVCR1 5'UTR 0.32 TCGA-G7-6795-01 5 37381726 37381726 C T WDR70 Silent p.D38D 0.32 TCGA-G7-6795-01 7 122765636 122765636 A G SLC13A1 Silent p.P409P 0.39 TCGA-G7-6795-01 7 134260255 134260255 G T AKR1B15 Missense_Mutation p.L199F 0.37 deleterious(0) possibly_damaging(0.79) TCGA-G7-6795-01 7 48506568 48506568 C T ABCA13 Silent p.N4277N 0.35 TCGA-G7-6795-01 7 6370804 6370804 C T FAM220A 5'UTR 0.33 TCGA-G7-6795-01 8 107718929 107718929 T C OXR1 Silent p.L395L 0.27 TCGA-G7-6795-01 8 139737673 139737673 C T COL22A1 Missense_Mutation p.G717E 0.33 unknown(0) TCGA-G7-6795-01 8 26238568 26238568 T A BNIP3L 5'Flank 0.39 TCGA-G7-6795-01 8 80963849 80963851 GAT - TPD52 In_Frame_Del p.S140del 0.38 TCGA-G7-6795-01 9 130213647 130213647 A C RPL12 5'UTR 0.35 TCGA-G7-6795-01 9 139371469 139371469 G A SEC16A Missense_Mutation p.A200V 0.47 tolerated(0.05) benign(0.356) TCGA-G7-6795-01 X 1531837 1531837 A T ASMTL Intron 0.57 TCGA-G7-6796-01 10 7825098 7825098 C G KIN Missense_Mutation p.R52T 0.12 deleterious(0) probably_damaging(0.946) TCGA-G7-6796-01 10 95849076 95849076 A G PLCE1 Intron 0.38 TCGA-G7-6796-01 11 61730354 61730354 C T BEST1 Silent p.A516A 0.14 TCGA-G7-6796-01 12 102127436 102127436 C G SYCP3 Missense_Mutation p.E124Q 0.12 tolerated(0.17) possibly_damaging(0.795) TCGA-G7-6796-01 12 21962862 21962862 G A ABCC9 Silent p.C1413C 0.20 TCGA-G7-6796-01 12 22666235 22666235 T C C2CD5 Missense_Mutation p.E344G 0.15 tolerated(0.06) benign(0.416) TCGA-G7-6796-01 12 49854715 49854715 A C SPATS2 5'UTR 0.42 TCGA-G7-6796-01 12 52761009 52761009 A G KRT85 Missense_Mutation p.S61P 0.20 tolerated(0.23) benign(0.001) TCGA-G7-6796-01 12 67663416 67663416 G A CAND1 5'UTR 0.24 TCGA-G7-6796-01 12 7055012 7055012 A G C12orf57 Missense_Mutation p.K103R 0.12 tolerated(1) probably_damaging(0.953) TCGA-G7-6796-01 12 9847536 9847536 G A CLEC2D 3'UTR 0.38 TCGA-G7-6796-01 13 31233386 31233386 A C USPL1 Missense_Mutation p.K1058Q 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-G7-6796-01 13 48833064 48833064 A G ITM2B Silent p.Q232Q 0.16 TCGA-G7-6796-01 14 24475156 24475156 T C DHRS4L2 3'UTR 0.15 TCGA-G7-6796-01 14 68162445 68162445 A G RDH11 5'UTR 0.27 TCGA-G7-6796-01 15 25453169 25453173 GCTGT - SNORD115-22 5'Flank 0.20 TCGA-G7-6796-01 15 77406883 77406886 TCCC - PEAK1 Frame_Shift_Del p.R1618Nfs*28 0.31 TCGA-G7-6796-01 16 67910484 67910484 G A EDC4 Silent p.K111K 0.20 TCGA-G7-6796-01 17 18111630 18111630 C T ALKBH5 Missense_Mutation p.R369C 0.09 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-G7-6796-01 17 29261209 29261209 G A ADAP2 Missense_Mutation p.R135Q 0.21 deleterious(0.03) probably_damaging(0.994) TCGA-G7-6796-01 17 37188161 37188161 G T CTD-2206N4.2 5'Flank 0.29 TCGA-G7-6796-01 17 41244817 41244817 C T BRCA1 Missense_Mutation p.G911R 0.16 tolerated(0.07) possibly_damaging(0.551) TCGA-G7-6796-01 17 45668145 45668145 A G NPEPPS Silent p.V386V 0.12 TCGA-G7-6796-01 17 55754379 55754379 G A MSI2 Missense_Mutation p.G326E 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-G7-6796-01 17 6718552 6718553 - A TEKT1 Frame_Shift_Ins p.I187Yfs*16 0.12 TCGA-G7-6796-01 17 74081426 74081426 T A EXOC7 Missense_Mutation p.I612F 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-G7-6796-01 18 10487626 10487626 C G APCDD1 Missense_Mutation p.A379G 0.15 deleterious(0) possibly_damaging(0.753) TCGA-G7-6796-01 19 36128157 36128157 G A RBM42 Silent p.K411K 0.16 TCGA-G7-6796-01 19 52724382 52724382 T C PPP2R1A Missense_Mutation p.I505T 0.22 deleterious(0) possibly_damaging(0.808) TCGA-G7-6796-01 19 58945194 58945194 T A ZNF132 Silent p.G539G 0.20 TCGA-G7-6796-01 19 6833546 6833546 T G VAV1 Missense_Mutation p.F540V 0.13 deleterious(0) probably_damaging(0.946) TCGA-G7-6796-01 1 144856892 144856892 T C PDE4DIP Missense_Mutation p.K2198R 0.06 tolerated(0.39) benign(0.019) TCGA-G7-6796-01 1 154574720 154574720 A T ADAR Missense_Mutation p.L133Q 0.25 deleterious(0) probably_damaging(0.99) TCGA-G7-6796-01 1 157559028 157559028 T C FCRL4 Silent p.P91P 0.19 TCGA-G7-6796-01 1 167745333 167745333 A C MPZL1 Missense_Mutation p.K213T 0.13 tolerated(0.14) benign(0.076) TCGA-G7-6796-01 1 174979129 174979129 G T CACYBP Missense_Mutation p.D201Y 0.24 deleterious(0) probably_damaging(0.976) TCGA-G7-6796-01 1 211545951 211545952 - C TRAF5 Frame_Shift_Ins p.S528Lfs*12 0.13 TCGA-G7-6796-01 1 27094329 27094329 G A ARID1A Missense_Mutation p.E1013K 0.22 unknown(0) TCGA-G7-6796-01 1 39798098 39798098 A T MACF1 Intron 0.18 TCGA-G7-6796-01 1 6246873 6246873 A T RPL22 Nonsense_Mutation p.Y82* 0.23 TCGA-G7-6796-01 20 18496315 18496315 A T SEC23B Missense_Mutation p.I101L 0.14 tolerated(0.06) benign(0.303) TCGA-G7-6796-01 2 215865500 215865500 T G ABCA12 Missense_Mutation p.Q1036H 0.19 tolerated(0.06) possibly_damaging(0.481) TCGA-G7-6796-01 2 219222364 219222364 C T C2orf62 Nonsense_Mutation p.Q76* 0.17 TCGA-G7-6796-01 3 14154311 14154311 C G CHCHD4 3'UTR 0.24 TCGA-G7-6796-01 3 172232704 172232704 T C TNFSF10 Missense_Mutation p.M73V 0.24 tolerated(0.32) benign(0.001) TCGA-G7-6796-01 3 39431018 39431018 C T SLC25A38 Silent p.G34G 0.22 TCGA-G7-6796-01 3 9758767 9758768 - T CPNE9 Frame_Shift_Ins p.D305* 0.24 TCGA-G7-6796-01 4 13616069 13616069 G T BOD1L1 Missense_Mutation p.Q309K 0.21 possibly_damaging(0.856) TCGA-G7-6796-01 4 141832440 141832440 G C RNF150 Missense_Mutation p.N352K 0.13 deleterious(0.03) benign(0.37) TCGA-G7-6796-01 4 68385012 68385012 C G CENPC Missense_Mutation p.K180N 0.26 tolerated(0.06) probably_damaging(0.981) TCGA-G7-6796-01 4 8372681 8372681 G A ACOX3 Missense_Mutation p.P646L 0.20 deleterious(0) probably_damaging(1) TCGA-G7-6796-01 5 13928214 13928214 T A DNAH5 Missense_Mutation p.E89V 0.18 benign(0) TCGA-G7-6796-01 5 140772927 140772927 C T PCDHGA8 Nonsense_Mutation p.Q183* 0.10 TCGA-G7-6796-01 5 162943775 162943775 T A MAT2B Intron 0.29 TCGA-G7-6796-01 6 152673335 152673335 T C SYNE1 Missense_Mutation p.T3803A 0.17 benign(0.001) TCGA-G7-6796-01 6 25600730 25600730 C A LRRC16A Missense_Mutation p.P1103H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.541) TCGA-G7-6796-01 6 38843585 38843585 G - DNAH8 Frame_Shift_Del p.E2396Dfs*46 0.15 TCGA-G7-6796-01 6 43042368 43042368 G T KLC4 Silent p.R624R 0.12 TCGA-G7-6796-01 6 70462182 70462182 T C LMBRD1 Missense_Mutation p.E125G 0.21 deleterious(0.02) benign(0.133) TCGA-G7-6796-01 7 120595620 120595620 A G ING3 Missense_Mutation p.Y70C 0.10 deleterious(0.01) possibly_damaging(0.853) TCGA-G7-6796-01 7 66410208 66410208 T C TMEM248 Silent p.H135H 0.17 TCGA-G7-6796-01 8 145579793 145579793 T C FBXL6 Missense_Mutation p.Q436R 0.18 tolerated(0.7) benign(0.006) TCGA-G7-6796-01 8 42173753 42173753 T A IKBKB Missense_Mutation p.W276R 0.21 deleterious(0) probably_damaging(0.962) TCGA-G7-6796-01 8 6302006 6302006 A T MCPH1 Missense_Mutation p.I255F 0.26 tolerated(0.07) possibly_damaging(0.531) TCGA-G7-6796-01 9 126143675 126143675 C T DENND1A 3'UTR 0.27 TCGA-G7-6797-01 10 13222572 13222572 A C MCM10 Missense_Mutation p.I300L 0.46 tolerated(0.28) benign(0.145) TCGA-G7-6797-01 10 72643783 72643783 T C PCBD1 Missense_Mutation p.H80R 0.31 deleterious(0) probably_damaging(1) TCGA-G7-6797-01 11 107975156 107975156 C A CUL5 3'UTR 0.49 TCGA-G7-6797-01 11 49974076 49974076 C A OR4C13 Silent p.I34I 0.12 TCGA-G7-6797-01 11 71723991 71723991 G T NUMA1 Missense_Mutation p.L1520M 0.40 probably_damaging(1) TCGA-G7-6797-01 12 110457067 110457067 T C ANKRD13A Missense_Mutation p.V223A 0.46 deleterious(0.03) possibly_damaging(0.672) TCGA-G7-6797-01 12 13140120 13140120 T C HEBP1 Missense_Mutation p.I122V 0.40 tolerated(0.19) benign(0.016) TCGA-G7-6797-01 12 27809595 27809595 A C PPFIBP1 Missense_Mutation p.E279A 0.46 deleterious(0.02) benign(0.066) TCGA-G7-6797-01 12 50503242 50503242 C G GPD1 Nonsense_Mutation p.Y330* 0.29 TCGA-G7-6797-01 12 53170736 53170736 T - KRT76 Frame_Shift_Del p.S114Vfs*45 0.32 TCGA-G7-6797-01 12 59271290 59271290 C A LRIG3 Missense_Mutation p.V810F 0.64 deleterious(0) benign(0.342) TCGA-G7-6797-01 14 61190290 61190290 A C SIX4 Missense_Mutation p.I168S 0.41 deleterious(0) possibly_damaging(0.777) TCGA-G7-6797-01 14 65056079 65056079 G A PPP1R36 3'UTR 0.46 TCGA-G7-6797-01 15 78765688 78765688 G A IREB2 Missense_Mutation p.V330I 0.46 tolerated(0.25) benign(0.04) TCGA-G7-6797-01 15 78765689 78765689 T C IREB2 Missense_Mutation p.V330A 0.46 tolerated(0.86) benign(0.006) TCGA-G7-6797-01 16 16248578 16248578 C A ABCC6 Missense_Mutation p.W1372L 0.10 deleterious(0) probably_damaging(0.999) TCGA-G7-6797-01 16 2511752 2511752 C T C16orf59 Silent p.L204L 0.24 TCGA-G7-6797-01 16 67000741 67000741 C A CES3 Missense_Mutation p.N345K 0.37 deleterious(0.01) probably_damaging(0.966) TCGA-G7-6797-01 16 67576026 67576026 G A FAM65A Missense_Mutation p.R466Q 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-G7-6797-01 16 89717999 89717999 G C CHMP1A Missense_Mutation p.A28G 0.56 tolerated(0.08) benign(0.262) TCGA-G7-6797-01 17 19610045 19610045 C G SLC47A2 Missense_Mutation p.G289R 0.50 deleterious(0) probably_damaging(0.947) TCGA-G7-6797-01 17 30696350 30696350 A T ZNF207 Missense_Mutation p.N401Y 0.51 tolerated(0.2) probably_damaging(0.991) TCGA-G7-6797-01 17 56355333 56355333 C T MPO Silent p.L353L 0.10 TCGA-G7-6797-01 17 58740837 58740837 G A PPM1D Missense_Mutation p.R581Q 0.50 tolerated_low_confidence(0.07) probably_damaging(0.962) TCGA-G7-6797-01 17 6913791 6913791 A G ALOX12 3'UTR 0.48 TCGA-G7-6797-01 18 46447887 46447887 C T SMAD7 Missense_Mutation p.R379Q 0.35 tolerated(0.16) probably_damaging(0.973) TCGA-G7-6797-01 19 19613195 19613195 C T GATAD2A Missense_Mutation p.T544M 0.37 deleterious(0.02) possibly_damaging(0.587) TCGA-G7-6797-01 19 35435141 35435141 G C ZNF30 Missense_Mutation p.G425A 0.09 deleterious(0) probably_damaging(0.991) TCGA-G7-6797-01 19 38230139 38230139 C A ZNF573 Nonsense_Mutation p.E418* 0.43 TCGA-G7-6797-01 19 38230140 38230140 C A ZNF573 Missense_Mutation p.K417N 0.44 tolerated(0.33) probably_damaging(0.996) TCGA-G7-6797-01 19 50097991 50097991 G C PRR12 Silent p.S133S 0.46 TCGA-G7-6797-01 1 212799448 212799448 G T FAM71A Missense_Mutation p.R410M 0.76 deleterious(0.05) benign(0.023) TCGA-G7-6797-01 1 229770859 229770859 G C URB2 Missense_Mutation p.A167P 0.90 tolerated(0.23) benign(0.001) TCGA-G7-6797-01 1 229770863 229770863 A G URB2 Missense_Mutation p.Q168R 0.90 tolerated(0.09) possibly_damaging(0.543) TCGA-G7-6797-01 1 33960785 33960785 C T ZSCAN20 Silent p.I947I 0.92 TCGA-G7-6797-01 20 35399580 35399580 C A DSN1 Missense_Mutation p.M17I 0.31 tolerated_low_confidence(0.21) benign(0.055) TCGA-G7-6797-01 22 30051666 30051666 G A NF2 Splice_Site p.X200_splice 0.87 TCGA-G7-6797-01 2 133541732 133541732 C G NCKAP5 Missense_Mutation p.W884C 0.62 deleterious(0.01) probably_damaging(0.986) TCGA-G7-6797-01 2 160084382 160084382 T G TANC1 Missense_Mutation p.F1319C 0.51 deleterious(0) probably_damaging(1) TCGA-G7-6797-01 2 17955658 17955658 C T GEN1 Nonsense_Mutation p.Q398* 0.48 TCGA-G7-6797-01 2 231741583 231741583 G C ITM2C Silent p.A154A 0.46 TCGA-G7-6797-01 2 26532908 26532908 C A GPR113 Silent p.V1048V 0.45 TCGA-G7-6797-01 2 54147352 54147352 C - PSME4 Frame_Shift_Del p.D800Mfs*15 0.38 TCGA-G7-6797-01 2 61705929 61705930 - A XPO1 3'UTR 0.43 TCGA-G7-6797-01 2 69553334 69553334 A T GFPT1 Missense_Mutation p.V696E 0.37 deleterious(0) probably_damaging(0.948) TCGA-G7-6797-01 3 101370105 101370105 C T ZBTB11 Missense_Mutation p.V1023I 0.42 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G7-6797-01 3 113376409 113376409 T C KIAA2018 Missense_Mutation p.M1374V 0.39 benign(0.01) TCGA-G7-6797-01 3 120122159 120122159 A G FSTL1 Silent p.N208N 0.44 TCGA-G7-6797-01 3 185766603 185766603 G A ETV5 Missense_Mutation p.A453V 0.59 deleterious(0.02) probably_damaging(0.994) TCGA-G7-6797-01 3 46399085 46399085 T A CCR2 Missense_Mutation p.F23I 0.50 tolerated(0.37) benign(0) TCGA-G7-6797-01 3 48668741 48668741 T C SLC26A6 Splice_Site p.X302_splice 0.64 TCGA-G7-6797-01 3 49394910 49394910 G A GPX1 Missense_Mutation p.P175S 0.08 deleterious(0) probably_damaging(0.987) TCGA-G7-6797-01 3 50379017 50379017 C T ZMYND10 Nonsense_Mutation p.W412* 0.41 TCGA-G7-6797-01 3 56658883 56658883 G C FAM208A Missense_Mutation p.Q1431E 0.41 deleterious(0) possibly_damaging(0.839) TCGA-G7-6797-01 3 58517532 58517532 C A ACOX2 Silent p.R197R 0.50 TCGA-G7-6797-01 4 187539870 187539870 C A FAT1 Missense_Mutation p.D2624Y 0.44 probably_damaging(1) TCGA-G7-6797-01 5 1335258 1335258 A G CLPTM1L Missense_Mutation p.L237P 0.37 deleterious(0) possibly_damaging(0.908) TCGA-G7-6797-01 5 135276238 135276238 A - FBXL21 RNA 0.30 TCGA-G7-6797-01 5 63905047 63905047 T - RGS7BP Frame_Shift_Del p.F248Sfs*19 0.34 TCGA-G7-6797-01 5 78426827 78426828 - A BHMT Frame_Shift_Ins p.D371Rfs*21 0.35 TCGA-G7-6797-01 6 151626981 151626981 C G AKAP12 Missense_Mutation p.L88V 0.40 tolerated_low_confidence(1) benign(0) TCGA-G7-6797-01 7 44105125 44105125 C A PGAM2 Missense_Mutation p.A2S 0.37 tolerated(0.48) benign(0.001) TCGA-G7-6797-01 7 44621125 44621125 A G TMED4 Missense_Mutation p.S104P 0.55 deleterious(0.02) possibly_damaging(0.692) TCGA-G7-6797-01 8 141745382 141745382 C T PTK2 Silent p.R666R 0.54 TCGA-G7-6797-01 8 24209520 24209520 T C ADAM28 Silent p.H733H 0.42 TCGA-G7-6797-01 8 56435874 56435874 C G XKR4 Silent p.A347A 0.48 TCGA-G7-6797-01 8 76465335 76465335 T C HNF4G Missense_Mutation p.I173T 0.47 tolerated(0.14) benign(0.113) TCGA-G7-6797-01 9 131565636 131565636 C G TBC1D13 Missense_Mutation p.I217M 0.55 tolerated(0.08) possibly_damaging(0.826) TCGA-G7-6797-01 9 7799724 7799724 C G TMEM261 Missense_Mutation p.R4P 0.09 tolerated(0.26) benign(0.079) TCGA-G7-6797-01 X 102337711 102337711 C T NXF3 Missense_Mutation p.V253I 0.95 tolerated(1) benign(0.001) TCGA-G7-6797-01 X 117731503 117731503 A T DOCK11 Silent p.A791A 0.96 TCGA-G7-6797-01 X 118223094 118223094 A G KIAA1210 Missense_Mutation p.I700T 0.87 tolerated(0.19) benign(0.047) TCGA-G7-7501-01 11 65829382 65829382 C A SF3B2 Silent p.P630P 0.50 TCGA-G7-7501-01 11 72406598 72406598 T C ARAP1 Missense_Mutation p.S1166G 0.40 deleterious(0.01) possibly_damaging(0.519) TCGA-G7-7501-01 11 95523844 95523844 C G CEP57 5'UTR 0.53 TCGA-G7-7501-01 12 122616846 122616846 C T MLXIP Silent p.F336F 0.50 TCGA-G7-7501-01 12 18892035 18892035 T A CAPZA3 Missense_Mutation p.L278Q 0.42 deleterious(0.01) probably_damaging(0.93) TCGA-G7-7501-01 12 52827640 52827640 C T KRT75 Missense_Mutation p.R150H 0.40 deleterious(0.01) benign(0.444) TCGA-G7-7501-01 13 29600351 29600351 G A MTUS2 Missense_Mutation p.V516I 0.40 tolerated(0.13) benign(0.154) TCGA-G7-7501-01 13 35733740 35733740 A C NBEA Silent p.T1144T 0.17 TCGA-G7-7501-01 14 52907333 52907333 G C TXNDC16 Missense_Mutation p.T651R 0.08 tolerated(0.47) benign(0.003) TCGA-G7-7501-01 15 28600108 28600108 C T RP11-483E23.2 RNA 0.20 TCGA-G7-7501-01 15 79185887 79185887 T C MORF4L1 Missense_Mutation p.Y222H 0.34 tolerated(0.48) benign(0.002) TCGA-G7-7501-01 16 24582258 24582258 A C RBBP6 Missense_Mutation p.T1291P 0.41 deleterious_low_confidence(0) unknown(0) TCGA-G7-7501-01 16 29107457 29107457 C T RRN3P2 RNA 0.32 TCGA-G7-7501-01 16 2946455 2946461 CCCTGCC GGCA FLYWCH2 In_Frame_Del p.P2_P4delinsRH 0.34 TCGA-G7-7501-01 17 2601830 2601830 C T CLUH Missense_Mutation p.G403S 0.29 deleterious(0) probably_damaging(1) TCGA-G7-7501-01 17 78444656 78444656 C A NPTX1 Missense_Mutation p.G419V 0.13 deleterious(0) probably_damaging(1) TCGA-G7-7501-01 19 12060128 12060128 C T ZNF700 Missense_Mutation p.A430V 0.37 tolerated(0.49) benign(0.14) TCGA-G7-7501-01 19 39914552 39914552 C G PLEKHG2 Missense_Mutation p.L927V 0.40 deleterious_low_confidence(0.01) benign(0.002) TCGA-G7-7501-01 19 44418234 44418234 C T ZNF45 Missense_Mutation p.G452S 0.34 tolerated(0.1) probably_damaging(0.983) TCGA-G7-7501-01 19 47969527 47969527 C T SLC8A2 Missense_Mutation p.G45E 0.75 tolerated(0.24) benign(0.028) TCGA-G7-7501-01 1 153736638 153736638 A G INTS3 Silent p.L622L 0.44 TCGA-G7-7501-01 1 167962583 167962583 G A DCAF6 Missense_Mutation p.V270I 0.21 deleterious(0.02) probably_damaging(0.931) TCGA-G7-7501-01 1 207085119 207085119 G C FAIM3 Silent p.P222P 0.25 TCGA-G7-7501-01 1 207105817 207105817 C G PIGR Silent p.R664R 0.34 TCGA-G7-7501-01 1 75114999 75114999 C A C1orf173 Silent p.G8G 0.33 TCGA-G7-7501-01 20 23370612 23370612 A G NAPB Missense_Mutation p.Y178H 0.45 deleterious(0) probably_damaging(0.997) TCGA-G7-7501-01 21 43161570 43161570 C A RIPK4 Missense_Mutation p.V595L 0.31 deleterious(0.03) benign(0.389) TCGA-G7-7501-01 22 17073382 17073382 C T CCT8L2 Missense_Mutation p.R20K 0.81 tolerated(1) benign(0) TCGA-G7-7501-01 2 131897791 131897791 G C PLEKHB2 Missense_Mutation p.V167L 0.39 tolerated(0.08) benign(0.213) TCGA-G7-7501-01 2 179567316 179567316 C A TTN Nonsense_Mutation p.E10100* 0.50 TCGA-G7-7501-01 2 198365946 198365946 C G HSPE1-MOB4 Missense_Mutation p.S51W 0.40 deleterious(0) possibly_damaging(0.619) TCGA-G7-7501-01 3 114070801 114070801 C A ZBTB20 Intron 0.35 TCGA-G7-7501-01 3 38050062 38050062 C A PLCD1 Missense_Mutation p.G618W 0.15 deleterious(0) probably_damaging(1) TCGA-G7-7501-01 3 58179114 58179114 T C DNASE1L3 Missense_Mutation p.S253G 0.35 tolerated(0.54) benign(0.004) TCGA-G7-7501-01 4 89575198 89575198 G T HERC3 Nonsense_Mutation p.E231* 0.71 TCGA-G7-7501-01 5 150050078 150050078 G A MYOZ3 Missense_Mutation p.V32M 0.68 deleterious(0.03) possibly_damaging(0.719) TCGA-G7-7501-01 6 33048613 33048613 A - HLA-DPB1 Frame_Shift_Del p.N89Tfs*28 0.12 TCGA-G7-7501-01 6 39159334 39159334 G A KCNK5 Nonsense_Mutation p.Q278* 0.33 TCGA-G7-7501-01 6 74135070 74135070 A G MB21D1 Silent p.Y483Y 0.43 TCGA-G7-7501-01 7 120629777 120629777 C G CPED1 Silent p.T34T 0.42 TCGA-G7-7501-01 7 121679512 121679512 A T PTPRZ1 Missense_Mutation p.K1836I 0.52 deleterious(0.02) possibly_damaging(0.71) TCGA-G7-7501-01 7 99746597 99746598 - G LAMTOR4 Frame_Shift_Ins 0.25 TCGA-G7-7501-01 X 111090414 111090416 TCA - TRPC5 Nonsense_Mutation p.Y542_E543delins* 0.49 TCGA-G7-7501-01 X 138684576 138684576 C T MCF2 Missense_Mutation p.A685T 0.31 tolerated(0.21) benign(0.106) TCGA-G7-7501-01 X 9863548 9863548 C T SHROOM2 Missense_Mutation p.R534W 0.40 deleterious(0.02) benign(0.061) TCGA-G7-7502-01 10 15107661 15107661 G A OLAH Missense_Mutation p.G214S 0.28 deleterious(0.03) probably_damaging(0.987) TCGA-G7-7502-01 11 26725363 26725363 A C SLC5A12 Missense_Mutation p.N219K 0.33 tolerated(0.12) possibly_damaging(0.696) TCGA-G7-7502-01 11 34514981 34514981 T G ELF5 Intron 0.33 TCGA-G7-7502-01 11 62293750 62293750 G - AHNAK Frame_Shift_Del p.L2714* 0.22 TCGA-G7-7502-01 11 66625625 66625625 C T LRFN4 Missense_Mutation p.P137L 0.27 tolerated(0.09) benign(0.391) TCGA-G7-7502-01 11 68205929 68205929 C T LRP5 Missense_Mutation p.P1376L 0.24 tolerated(0.08) benign(0.008) TCGA-G7-7502-01 12 113306301 113306301 C A RPH3A Missense_Mutation p.P171T 0.21 deleterious(0) probably_damaging(0.999) TCGA-G7-7502-01 12 123286278 123286278 A T CCDC62 Missense_Mutation p.M529L 0.24 deleterious(0.01) benign(0.004) TCGA-G7-7502-01 12 129283926 129283926 A G SLC15A4 Missense_Mutation p.M484T 0.38 deleterious(0) probably_damaging(0.998) TCGA-G7-7502-01 12 49433380 49433380 C G KMT2D Silent p.L2689L 0.31 TCGA-G7-7502-01 13 84453895 84453895 G A SLITRK1 Missense_Mutation p.A583V 0.24 tolerated(0.29) benign(0.041) TCGA-G7-7502-01 13 99890774 99890774 T C UBAC2 Missense_Mutation p.V42A 0.24 tolerated(0.33) benign(0.002) TCGA-G7-7502-01 15 40914067 40914068 TT - CASC5 Frame_Shift_Del p.N561Kfs*2 0.24 TCGA-G7-7502-01 15 73428245 73428245 G T NEO1 Missense_Mutation p.V298L 0.27 tolerated(0.18) benign(0.001) TCGA-G7-7502-01 15 75142970 75142970 A T SCAMP2 Missense_Mutation p.W173R 0.22 tolerated(0.09) benign(0.026) TCGA-G7-7502-01 15 85159554 85159554 G A ZSCAN2 Intron 0.32 TCGA-G7-7502-01 16 20482481 20482481 C G ACSM2A Missense_Mutation p.P228R 0.24 deleterious(0) probably_damaging(1) TCGA-G7-7502-01 16 27761006 27761006 T A KIAA0556 Missense_Mutation p.S909T 0.24 deleterious(0.01) possibly_damaging(0.757) TCGA-G7-7502-01 16 29884867 29884867 T A SEZ6L2 Missense_Mutation p.K763I 0.18 deleterious(0.02) probably_damaging(0.99) TCGA-G7-7502-01 16 50104088 50104088 G A HEATR3 Splice_Site p.X134_splice 0.53 TCGA-G7-7502-01 16 56401438 56401438 C A AMFR Missense_Mutation p.R506L 0.25 tolerated(0.24) benign(0.01) TCGA-G7-7502-01 16 70866949 70866949 T A HYDIN Missense_Mutation p.K4567N 0.27 possibly_damaging(0.895) TCGA-G7-7502-01 17 37898588 37898588 A G GRB7 Missense_Mutation p.S35G 0.41 deleterious(0.02) unknown(0) TCGA-G7-7502-01 17 46058013 46058013 C T CDK5RAP3 Silent p.L378L 0.06 TCGA-G7-7502-01 18 320040 320040 G A COLEC12 3'UTR 0.06 TCGA-G7-7502-01 18 59482954 59482954 A G RNF152 3'UTR 0.48 TCGA-G7-7502-01 19 10250732 10250732 A - DNMT1 Frame_Shift_Del p.S1266Pfs*31 0.20 TCGA-G7-7502-01 19 19789581 19789581 G C ZNF101 Silent p.L59L 0.18 TCGA-G7-7502-01 19 36831515 36831515 A C ZFP14 Missense_Mutation p.F405V 0.29 deleterious(0) probably_damaging(0.999) TCGA-G7-7502-01 19 58265245 58265245 T - ZNF776 Frame_Shift_Del p.N249Kfs*143 0.20 TCGA-G7-7502-01 19 5941706 5941706 T C RANBP3 Missense_Mutation p.E111G 0.29 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-G7-7502-01 1 12855985 12855985 T C PRAMEF1 Missense_Mutation p.L422S 0.04 tolerated(0.65) benign(0.121) TCGA-G7-7502-01 1 145764859 145764859 T C GPR89A 3'UTR 0.29 TCGA-G7-7502-01 1 158669896 158669896 C T OR6K2 Missense_Mutation p.V183M 0.32 deleterious(0.01) benign(0.363) TCGA-G7-7502-01 1 159019275 159019275 G T IFI16 Intron 0.25 TCGA-G7-7502-01 1 176740277 176740277 G T PAPPA2 Missense_Mutation p.G1559V 0.25 deleterious(0) probably_damaging(1) TCGA-G7-7502-01 1 196762616 196762616 G T CFHR3 Silent p.G322G 0.06 TCGA-G7-7502-01 1 196762617 196762617 A T CFHR3 Missense_Mutation p.I323L 0.06 tolerated(0.69) possibly_damaging(0.456) TCGA-G7-7502-01 1 28477260 28477260 G A PTAFR Silent p.N91N 0.36 TCGA-G7-7502-01 1 29520539 29520539 T A MECR Missense_Mutation p.M373L 0.32 tolerated(0.17) benign(0.004) TCGA-G7-7502-01 1 32646099 32646099 T C TXLNA Silent p.A51A 0.29 TCGA-G7-7502-01 1 38174030 38174030 C T CDCA8 Missense_Mutation p.H279Y 0.21 tolerated_low_confidence(0.55) benign(0.001) TCGA-G7-7502-01 1 70671136 70671136 C G LRRC40 Missense_Mutation p.G30R 0.09 tolerated(0.07) possibly_damaging(0.898) TCGA-G7-7502-01 1 7845603 7845603 A C PER3 Silent p.L77L 0.24 TCGA-G7-7502-01 20 31825663 31825663 G A BPIFA1 Missense_Mutation p.G49E 0.37 deleterious(0.02) benign(0.037) TCGA-G7-7502-01 20 33578248 33578248 A T MYH7B Intron 0.50 TCGA-G7-7502-01 20 57599037 57599037 G A TUBB1 Silent p.A185A 0.12 TCGA-G7-7502-01 20 5903930 5903930 T C CHGB Silent p.S380S 0.22 TCGA-G7-7502-01 21 30547133 30547133 T - MAP3K7CL Frame_Shift_Del p.L217* 0.22 TCGA-G7-7502-01 21 47423886 47423886 G A COL6A1 Missense_Mutation p.V1016I 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-G7-7502-01 22 19966432 19966432 G A ARVCF Missense_Mutation p.S523L 0.19 deleterious(0) probably_damaging(0.996) TCGA-G7-7502-01 22 24938994 24938994 A T GUCD1 Missense_Mutation p.F235I 0.29 deleterious(0) possibly_damaging(0.714) TCGA-G7-7502-01 22 37334445 37334445 G T CSF2RB Silent p.V865V 0.22 TCGA-G7-7502-01 22 37334446 37334446 C T CSF2RB Missense_Mutation p.P866S 0.22 deleterious(0.01) probably_damaging(0.911) TCGA-G7-7502-01 2 175215408 175215408 T C CIR1 Silent p.K219K 0.07 TCGA-G7-7502-01 2 219556970 219556970 C G STK36 Silent p.L623L 0.50 TCGA-G7-7502-01 2 233350797 233350797 G A ECEL1 Silent p.D189D 0.23 TCGA-G7-7502-01 2 86716748 86716749 - GGG KDM3A In_Frame_Ins p.K1180_D1181insG 0.42 TCGA-G7-7502-01 3 108110610 108110610 G A MYH15 Silent p.S1829S 0.18 TCGA-G7-7502-01 3 122128621 122128621 C T FAM162A Silent p.N136N 0.43 TCGA-G7-7502-01 3 142238533 142238533 G A ATR Silent p.L1454L 0.22 TCGA-G7-7502-01 3 49568641 49568641 A - DAG1 Frame_Shift_Del p.N233Tfs*34 0.19 TCGA-G7-7502-01 3 49720689 49720689 A G APEH Missense_Mutation p.S705G 0.18 tolerated(0.31) benign(0.02) TCGA-G7-7502-01 3 52022538 52022538 A C ACY1 Splice_Site p.X308_splice 0.21 TCGA-G7-7502-01 3 52554291 52554291 C A STAB1 Nonsense_Mutation p.C1828* 0.10 TCGA-G7-7502-01 3 9934676 9934676 G A JAGN1 Missense_Mutation p.S56N 0.26 tolerated(0.38) benign(0.105) TCGA-G7-7502-01 4 40122970 40122970 A - N4BP2 Frame_Shift_Del p.S1081Vfs*24 0.18 TCGA-G7-7502-01 6 132694134 132694134 A C MOXD1 Missense_Mutation p.D138E 0.29 tolerated(1) benign(0.003) TCGA-G7-7502-01 6 139563747 139563747 T C TXLNB Silent p.A657A 0.31 TCGA-G7-7502-01 6 31864742 31864742 C A EHMT2 Missense_Mutation p.A23S 0.28 tolerated_low_confidence(0.23) unknown(0) TCGA-G7-7502-01 6 32137737 32137737 C G AGPAT1 Intron 0.14 TCGA-G7-7502-01 6 32945266 32945266 T C BRD2 Silent p.A416A 0.25 TCGA-G7-7502-01 6 38913344 38913344 T C DNAH8 Missense_Mutation p.F3820L 0.31 probably_damaging(0.998) TCGA-G7-7502-01 6 43023807 43023820 GCCATCTCTCACCT - MRPL2 Splice_Site p.X173_splice 0.31 TCGA-G7-7502-01 6 44224125 44224125 G C SLC35B2 Missense_Mutation p.P105R 0.30 tolerated(0.53) benign(0.001) TCGA-G7-7502-01 6 75994430 75994430 G A TMEM30A 5'UTR 0.21 TCGA-G7-7502-01 7 27211695 27211695 C T HOXA10 Silent p.E352E 0.43 TCGA-G7-7502-01 8 32463201 32463201 G A NRG1 Missense_Mutation p.E134K 0.18 tolerated(0.24) benign(0.079) TCGA-G7-7502-01 8 37692907 37692907 C G GPR124 Missense_Mutation p.F608L 0.40 tolerated(0.31) benign(0.023) TCGA-G7-7502-01 9 128121733 128121733 G A GAPVD1 Missense_Mutation p.V1363I 0.21 tolerated(0.1) possibly_damaging(0.463) TCGA-G7-7502-01 9 27229376 27229376 C T TEK 3'UTR 0.50 TCGA-G7-A4TM-01 10 88227091 88227091 A G WAPAL Missense_Mutation p.I772T 0.52 deleterious(0) possibly_damaging(0.527) TCGA-G7-A4TM-01 11 1887915 1887915 G T LSP1 Missense_Mutation p.D71Y 0.46 deleterious_low_confidence(0) unknown(0) TCGA-G7-A4TM-01 11 62301415 62301415 C T AHNAK Silent p.T158T 0.59 TCGA-G7-A4TM-01 11 94341805 94341805 C T PIWIL4 Silent p.D632D 0.40 TCGA-G7-A4TM-01 12 109889450 109889450 G T KCTD10 Silent p.R298R 0.07 TCGA-G7-A4TM-01 12 31448170 31448170 G A FAM60A Missense_Mutation p.H76Y 0.56 deleterious(0) benign(0.038) TCGA-G7-A4TM-01 12 95415888 95415888 G T NR2C1 3'UTR 0.61 TCGA-G7-A4TM-01 15 44067740 44067740 C T ELL3 Missense_Mutation p.M184I 0.13 tolerated(0.16) benign(0.006) TCGA-G7-A4TM-01 15 77450971 77450971 C A PEAK1 Missense_Mutation p.D1069Y 0.42 deleterious(0.01) possibly_damaging(0.759) TCGA-G7-A4TM-01 16 16180696 16180696 G A ABCC1 Missense_Mutation p.G770R 0.13 deleterious(0) probably_damaging(1) TCGA-G7-A4TM-01 16 24788620 24788620 C G TNRC6A Missense_Mutation p.A177G 0.41 tolerated(0.1) benign(0.039) TCGA-G7-A4TM-01 16 3860637 3860637 G A CREBBP Silent p.I314I 0.32 TCGA-G7-A4TM-01 16 70548271 70548271 A T COG4 Missense_Mutation p.S171T 0.33 tolerated(0.31) benign(0.037) TCGA-G7-A4TM-01 17 26943696 26943696 G C KIAA0100 Missense_Mutation p.R2033G 0.62 deleterious(0) probably_damaging(0.96) TCGA-G7-A4TM-01 17 34956704 34956704 A C DHRS11 3'UTR 0.21 TCGA-G7-A4TM-01 17 46654346 46654346 G T HOXB4 Missense_Mutation p.S165Y 0.54 deleterious(0) probably_damaging(0.995) TCGA-G7-A4TM-01 17 54672182 54672182 C G NOG Missense_Mutation p.L200V 0.57 tolerated(0.28) benign(0.105) TCGA-G7-A4TM-01 17 54672302 54672302 C T NOG 3'UTR 0.58 TCGA-G7-A4TM-01 17 73487468 73487468 G T KIAA0195 Nonsense_Mutation p.E440* 0.28 TCGA-G7-A4TM-01 19 37038841 37038841 T - ZNF529 Frame_Shift_Del p.T207Pfs*4 0.24 TCGA-G7-A4TM-01 19 39226808 39226808 C T CAPN12 Missense_Mutation p.A509T 0.47 deleterious(0.02) benign(0.137) TCGA-G7-A4TM-01 19 42795850 42795850 C T CIC Missense_Mutation p.P947S 0.35 benign(0.002) TCGA-G7-A4TM-01 19 42819592 42819592 G T TMEM145 Missense_Mutation p.V216F 0.06 tolerated(0.2) benign(0.076) TCGA-G7-A4TM-01 19 45409073 45409073 T G APOE 5'UTR 0.41 TCGA-G7-A4TM-01 19 6307218 6307218 C T ACER1 Missense_Mutation p.R191H 0.24 deleterious(0) probably_damaging(0.953) TCGA-G7-A4TM-01 19 6307219 6307219 G T ACER1 Missense_Mutation p.R191S 0.26 deleterious(0) possibly_damaging(0.899) TCGA-G7-A4TM-01 1 113244309 113244309 C G RHOC Silent p.R145R 0.38 TCGA-G7-A4TM-01 1 214815619 214815619 A T CENPF Missense_Mutation p.E1313V 0.48 possibly_damaging(0.678) TCGA-G7-A4TM-01 1 26189753 26189755 TTG - PAQR7 In_Frame_Del p.N192del 0.44 TCGA-G7-A4TM-01 1 27876672 27876673 GT - AHDC1 Frame_Shift_Del p.T652Pfs*41 0.32 TCGA-G7-A4TM-01 1 42744042 42744042 T A FOXJ3 Nonsense_Mutation p.R116* 0.38 TCGA-G7-A4TM-01 1 43909353 43909353 G A SZT2 Missense_Mutation p.R2847H 0.05 deleterious(0.05) probably_damaging(0.958) TCGA-G7-A4TM-01 20 47587774 47587774 C G ARFGEF2 Silent p.L436L 0.42 TCGA-G7-A4TM-01 21 22710734 22710734 A C NCAM2 Missense_Mutation p.K308N 0.41 tolerated(0.28) possibly_damaging(0.733) TCGA-G7-A4TM-01 2 220026628 220026628 T A SLC23A3 3'UTR 0.40 TCGA-G7-A4TM-01 2 44539791 44539791 A G SLC3A1 Missense_Mutation p.M467V 0.35 tolerated(0.06) possibly_damaging(0.74) TCGA-G7-A4TM-01 3 98600601 98600601 A G DCBLD2 Silent p.C72C 0.35 TCGA-G7-A4TM-01 4 122722615 122722615 C T EXOSC9 Silent p.R12R 0.45 TCGA-G7-A4TM-01 5 153435905 153435908 TTAC - MFAP3 3'UTR 0.20 TCGA-G7-A4TM-01 5 154255023 154255023 G T CNOT8 3'UTR 0.27 TCGA-G7-A4TM-01 5 179201053 179201053 G A MAML1 Silent p.V742V 0.39 TCGA-G7-A4TM-01 5 73207182 73207182 A T ARHGEF28 Missense_Mutation p.N1577I 0.33 deleterious(0) possibly_damaging(0.461) TCGA-G7-A4TM-01 6 7584156 7584156 G C DSP Missense_Mutation p.E2221Q 0.35 benign(0.185) TCGA-G7-A4TM-01 7 151874152 151874158 TTTTTGG - KMT2C Frame_Shift_Del p.P2794Kfs*27 0.36 TCGA-G7-A4TM-01 8 125487509 125487509 C T RNF139 Silent p.L53L 0.42 TCGA-G7-A4TM-01 8 18080420 18080420 T C NAT1 Silent p.F350F 0.39 TCGA-G7-A4TM-01 9 36209297 36209297 C T CLTA Silent p.F173F 0.42 TCGA-G7-A4TM-01 9 79318374 79318374 G A PRUNE2 Missense_Mutation p.H2719Y 0.60 tolerated(0.13) possibly_damaging(0.791) TCGA-G7-A8LB-01 10 101949295 101949295 C G CHUK 3'UTR 0.43 TCGA-G7-A8LB-01 10 127512176 127512176 C T BCCIP Missense_Mutation p.P17L 0.54 deleterious_low_confidence(0.02) probably_damaging(0.96) TCGA-G7-A8LB-01 10 459976 459976 C T DIP2C Missense_Mutation p.V312M 0.42 deleterious(0.03) possibly_damaging(0.858) TCGA-G7-A8LB-01 10 48416620 48416620 A G GDF2 Missense_Mutation p.L25P 0.54 deleterious(0) probably_damaging(0.99) TCGA-G7-A8LB-01 10 69804160 69804160 C T HERC4 Splice_Site p.X129_splice 0.54 TCGA-G7-A8LB-01 10 73051493 73051493 G T UNC5B Missense_Mutation p.Q533H 0.41 tolerated(0.48) benign(0.001) TCGA-G7-A8LB-01 11 117973872 117973872 C A TMPRSS4 Missense_Mutation p.P72T 0.49 deleterious(0) possibly_damaging(0.502) TCGA-G7-A8LB-01 11 118635954 118635954 G T DDX6 Silent p.T203T 0.36 TCGA-G7-A8LB-01 11 2154108 2154108 G T IGF2 3'UTR 0.46 TCGA-G7-A8LB-01 11 47264636 47264637 - A ACP2 Frame_Shift_Ins p.V299Cfs*5 0.27 TCGA-G7-A8LB-01 11 94862760 94862760 G T ENDOD1 3'UTR 0.56 TCGA-G7-A8LB-01 11 95657091 95657091 G A MTMR2 Missense_Mutation p.L10F 0.42 deleterious_low_confidence(0.02) benign(0.102) TCGA-G7-A8LB-01 12 105582149 105582149 C A APPL2 Silent p.V518V 0.58 TCGA-G7-A8LB-01 12 112620983 112620983 C T HECTD4 Missense_Mutation p.D3477N 0.40 benign(0.172) TCGA-G7-A8LB-01 12 113704112 113704112 T A TPCN1 Missense_Mutation p.L194H 0.26 deleterious(0) probably_damaging(1) TCGA-G7-A8LB-01 12 122064731 122064731 C A ORAI1 Silent p.R28R 0.31 TCGA-G7-A8LB-01 12 122716772 122716772 G C VPS33A 3'UTR 0.31 TCGA-G7-A8LB-01 12 308000 308000 T G SLC6A12 Missense_Mutation p.Y270S 0.57 deleterious(0) probably_damaging(0.999) TCGA-G7-A8LB-01 12 31237572 31237572 G - DDX11 Frame_Shift_Del p.V151Cfs*10 0.20 TCGA-G7-A8LB-01 12 40760813 40760813 C A LRRK2 Missense_Mutation p.L2466I 0.33 tolerated(0.16) benign(0.035) TCGA-G7-A8LB-01 12 49942954 49942955 - CGGTGAGCCC KCNH3 Frame_Shift_Ins 0.17 TCGA-G7-A8LB-01 12 50834282 50834282 C T LARP4 Missense_Mutation p.H234Y 0.62 deleterious(0) possibly_damaging(0.741) TCGA-G7-A8LB-01 12 5153213 5153213 C A KCNA5 5'UTR 0.56 TCGA-G7-A8LB-01 12 51748131 51748132 - G GALNT6 3'UTR 0.21 TCGA-G7-A8LB-01 12 64615868 64615868 G A C12orf66 Silent p.S50S 0.67 TCGA-G7-A8LB-01 12 73012751 73012751 C T TRHDE Missense_Mutation p.A756V 0.32 tolerated(0.06) benign(0.413) TCGA-G7-A8LB-01 13 73357620 73357620 A T PIBF1 Missense_Mutation p.I5F 0.43 tolerated_low_confidence(0.18) benign(0.426) TCGA-G7-A8LB-01 14 105267928 105267928 C G ZBTB42 Missense_Mutation p.P132A 0.47 tolerated(0.27) benign(0.005) TCGA-G7-A8LB-01 14 21991632 21991632 C T SALL2 Missense_Mutation p.G744R 0.39 tolerated(0.06) possibly_damaging(0.577) TCGA-G7-A8LB-01 14 23511771 23511771 C T PSMB11 Missense_Mutation p.R113W 0.36 deleterious(0) probably_damaging(1) TCGA-G7-A8LB-01 14 23791398 23791398 A G BCL2L2-PABPN1 Silent p.E147E 0.39 TCGA-G7-A8LB-01 14 24682853 24682853 C A CHMP4A 5'UTR 0.52 TCGA-G7-A8LB-01 14 35871000 35871010 CTCAGAATTTC T NFKBIA 3'UTR 0.67 TCGA-G7-A8LB-01 14 92530454 92530454 A G ATXN3 3'UTR 0.60 TCGA-G7-A8LB-01 14 95058626 95058626 G C SERPINA5 3'UTR 0.38 TCGA-G7-A8LB-01 15 101188746 101188746 T G ASB7 3'UTR 0.50 TCGA-G7-A8LB-01 16 1259111 1259111 T C CACNA1H Missense_Mutation p.L1148P 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-G7-A8LB-01 16 21991981 21991981 T - UQCRC2 Frame_Shift_Del p.Q414Sfs*12 0.17 TCGA-G7-A8LB-01 16 23646629 23646629 G C PALB2 Missense_Mutation p.T413R 0.34 deleterious(0) probably_damaging(1) TCGA-G7-A8LB-01 16 27448951 27448954 ACAG - IL21R Frame_Shift_Del p.D100Sfs*26 0.50 TCGA-G7-A8LB-01 16 30537757 30537757 G A ZNF768 5'UTR 0.19 TCGA-G7-A8LB-01 16 3080512 3080512 G C CCDC64B Missense_Mutation p.L234V 0.61 tolerated(0.47) benign(0.138) TCGA-G7-A8LB-01 16 70190776 70190776 G C PDPR Silent p.G878G 0.38 TCGA-G7-A8LB-01 16 81077147 81077147 A T ATMIN Silent p.V348V 0.35 TCGA-G7-A8LB-01 16 8889985 8889985 A G TMEM186 Missense_Mutation p.C156R 0.61 deleterious(0) possibly_damaging(0.898) TCGA-G7-A8LB-01 16 89371696 89371696 C - ANKRD11 Frame_Shift_Del p.K49Rfs*3 0.21 TCGA-G7-A8LB-01 17 3446887 3446887 T C TRPV3 Missense_Mutation p.K116R 0.65 tolerated(0.24) benign(0.005) TCGA-G7-A8LB-01 17 41478069 41478069 G C ARL4D 3'UTR 0.34 TCGA-G7-A8LB-01 17 41576230 41576230 A T DHX8 Missense_Mutation p.D434V 0.21 deleterious(0.01) benign(0.022) TCGA-G7-A8LB-01 17 42855411 42855411 C T ADAM11 Missense_Mutation p.T721M 0.21 deleterious(0.01) possibly_damaging(0.743) TCGA-G7-A8LB-01 17 4619809 4619809 T C ARRB2 Missense_Mutation p.F88S 0.06 deleterious(0) probably_damaging(0.991) TCGA-G7-A8LB-01 18 19408867 19408867 T C MIB1 Intron 0.63 TCGA-G7-A8LB-01 18 43519695 43519695 T C EPG5 Missense_Mutation p.H657R 0.38 deleterious(0.01) probably_damaging(0.923) TCGA-G7-A8LB-01 18 64235858 64235858 T G CDH19 Missense_Mutation p.R95S 0.65 tolerated(0.73) benign(0.257) TCGA-G7-A8LB-01 18 74617340 74617340 C A ZNF236 Missense_Mutation p.L754I 0.31 tolerated(0.5) possibly_damaging(0.908) TCGA-G7-A8LB-01 19 11123641 11123641 G C SMARCA4 Missense_Mutation p.W764S 0.41 probably_damaging(1) TCGA-G7-A8LB-01 19 11141507 11141507 G C SMARCA4 Missense_Mutation p.G1162R 0.39 probably_damaging(1) TCGA-G7-A8LB-01 19 11470232 11470232 C A DKFZP761J1410 Intron 0.53 TCGA-G7-A8LB-01 19 17759377 17759377 G A UNC13A Missense_Mutation p.T560M 0.51 deleterious(0) probably_damaging(0.991) TCGA-G7-A8LB-01 19 39360598 39360598 G T RINL Silent p.R443R 0.38 TCGA-G7-A8LB-01 19 40172138 40172138 C T AC093063.3 5'Flank 0.32 TCGA-G7-A8LB-01 19 41105124 41105124 C G LTBP4 Missense_Mutation p.C56W 0.45 deleterious_low_confidence(0) benign(0.004) TCGA-G7-A8LB-01 19 54754535 54754541 TTGTTAG ATGT LILRB5 3'UTR 0.57 TCGA-G7-A8LB-01 19 7794389 7794389 G A CLEC4G Missense_Mutation p.H249Y 0.45 tolerated(0.17) benign(0.075) TCGA-G7-A8LB-01 19 8969402 8969403 - G MUC16 Frame_Shift_Ins p.T14315Nfs*40 0.30 TCGA-G7-A8LB-01 1 102270015 102270015 C A OLFM3 Missense_Mutation p.V386F 0.48 deleterious(0.01) possibly_damaging(0.628) TCGA-G7-A8LB-01 1 110031587 110031587 G A ATXN7L2 Missense_Mutation p.G301E 0.54 tolerated(0.98) benign(0.244) TCGA-G7-A8LB-01 1 171501480 171501480 A G PRRC2C Splice_Site p.X417_splice 0.47 TCGA-G7-A8LB-01 1 196927093 196927093 A G CFHR2 Missense_Mutation p.Y168C 0.46 deleterious(0) probably_damaging(0.972) TCGA-G7-A8LB-01 1 26392820 26392820 C T TRIM63 Missense_Mutation p.G91S 0.49 deleterious(0.01) probably_damaging(0.927) TCGA-G7-A8LB-01 20 30720849 30720849 C T TM9SF4 Silent p.L17L 0.33 TCGA-G7-A8LB-01 20 34116063 34116063 G A C20orf173 Intron 0.25 TCGA-G7-A8LB-01 20 5844152 5844152 C T C20orf196 3'UTR 0.06 TCGA-G7-A8LB-01 20 8000101 8000101 C A TMX4 Nonsense_Mutation p.E54* 0.35 TCGA-G7-A8LB-01 22 41721848 41721848 T C ZC3H7B Missense_Mutation p.S71P 0.66 deleterious(0) probably_damaging(0.994) TCGA-G7-A8LB-01 22 46704331 46704331 G A GTSE1 Missense_Mutation p.E85K 0.58 tolerated(0.2) possibly_damaging(0.67) TCGA-G7-A8LB-01 22 51159620 51159620 C T SHANK3 Missense_Mutation p.A1136V 0.65 benign(0.138) TCGA-G7-A8LB-01 2 160295123 160295123 T A BAZ2B Silent p.P328P 0.55 TCGA-G7-A8LB-01 2 166785751 166785751 A C TTC21B Missense_Mutation p.F427C 0.43 deleterious(0) probably_damaging(0.926) TCGA-G7-A8LB-01 2 179476842 179476842 G A TTN Nonsense_Mutation p.R16766* 0.44 TCGA-G7-A8LB-01 2 230127427 230127427 A G PID1 Missense_Mutation p.L32S 0.36 deleterious_low_confidence(0.02) benign(0.005) TCGA-G7-A8LB-01 2 24086371 24086371 T - ATAD2B Frame_Shift_Del p.L454* 0.31 TCGA-G7-A8LB-01 2 44512872 44512873 AC - SLC3A1 Intron 0.28 TCGA-G7-A8LB-01 2 47693891 47693892 - A MSH2 Frame_Shift_Ins p.N536Kfs*2 0.32 TCGA-G7-A8LB-01 2 68694828 68694828 C A APLF 5'UTR 0.40 TCGA-G7-A8LB-01 2 86968117 86968117 T C RMND5A Silent p.D70D 0.23 TCGA-G7-A8LB-01 2 95542306 95542306 G A TEKT4 Missense_Mutation p.S367N 0.20 tolerated(0.35) benign(0.049) TCGA-G7-A8LB-01 3 112709865 112709865 C T GTPBP8 Missense_Mutation p.R7W 0.41 deleterious_low_confidence(0.04) benign(0.004) TCGA-G7-A8LB-01 3 113442341 113442341 G T NAA50 Missense_Mutation p.H65N 0.08 tolerated(0.48) benign(0.003) TCGA-G7-A8LB-01 3 125844500 125844500 A G ALDH1L1 Missense_Mutation p.C597R 0.70 deleterious(0) probably_damaging(0.976) TCGA-G7-A8LB-01 3 152884419 152884419 T G RAP2B 3'UTR 0.26 TCGA-G7-A8LB-01 3 185341841 185341841 G T SENP2 Nonsense_Mutation p.E528* 0.35 TCGA-G7-A8LB-01 3 38070993 38070998 TCACCG - PLCD1 5'Flank 0.22 TCGA-G7-A8LB-01 3 48664425 48664425 G T SLC26A6 Missense_Mutation p.P653T 0.62 tolerated(0.12) benign(0.012) TCGA-G7-A8LB-01 3 50214250 50214250 A T SEMA3F Missense_Mutation p.K200M 0.26 deleterious(0) probably_damaging(0.998) TCGA-G7-A8LB-01 3 55018690 55018690 A G CACNA2D3 Missense_Mutation p.Y871C 0.75 deleterious(0.05) benign(0.243) TCGA-G7-A8LB-01 4 128930118 128930118 C G C4orf29 Missense_Mutation p.P108A 0.46 deleterious(0) probably_damaging(0.976) TCGA-G7-A8LB-01 4 185616233 185616233 A G CENPU 3'UTR 0.50 TCGA-G7-A8LB-01 4 2210096 2210125 GAGCTGATGCTCTTCTGTTTTTGGTCAGCA - POLN In_Frame_Del p.A102_S111del 0.40 TCGA-G7-A8LB-01 4 39191388 39191388 G C WDR19 Missense_Mutation p.D93H 0.52 deleterious(0) possibly_damaging(0.682) TCGA-G7-A8LB-01 4 57182299 57182299 C T KIAA1211 Silent p.D877D 0.51 TCGA-G7-A8LB-01 4 6107649 6107649 C T JAKMIP1 Missense_Mutation p.E59K 0.41 deleterious(0) probably_damaging(0.986) TCGA-G7-A8LB-01 4 78665898 78665898 A G CNOT6L Missense_Mutation p.C231R 0.38 tolerated(0.09) benign(0.166) TCGA-G7-A8LB-01 4 83552431 83552431 C G SCD5 3'UTR 0.53 TCGA-G7-A8LB-01 5 112860848 112860848 G C YTHDC2 Missense_Mutation p.R150T 0.51 deleterious(0.01) benign(0.041) TCGA-G7-A8LB-01 5 146991868 146991868 C T JAKMIP2 Splice_Site p.X804_splice 0.40 TCGA-G7-A8LB-01 5 156899945 156899945 A - NIPAL4 Frame_Shift_Del p.V461Yfs*3 0.29 TCGA-G7-A8LB-01 5 71739912 71739912 C T ZNF366 Missense_Mutation p.A636T 0.45 tolerated_low_confidence(0.4) benign(0.001) TCGA-G7-A8LB-01 5 74643113 74643113 A G HMGCR Missense_Mutation p.I179V 0.40 tolerated(0.12) probably_damaging(0.999) TCGA-G7-A8LB-01 6 10983974 10983974 T A ELOVL2 3'UTR 0.60 TCGA-G7-A8LB-01 6 111880633 111880633 G T TRAF3IP2 Missense_Mutation p.P558H 0.50 deleterious(0) probably_damaging(1) TCGA-G7-A8LB-01 6 11201212 11201212 G A NEDD9 Intron 0.08 TCGA-G7-A8LB-01 6 170871180 170871180 C A TBP Missense_Mutation p.P119Q 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-G7-A8LB-01 6 24667444 24667444 C A ACOT13 5'UTR 0.62 TCGA-G7-A8LB-01 6 31868749 31868749 T G ZBTB12 Missense_Mutation p.M112L 0.58 deleterious(0) benign(0.03) TCGA-G7-A8LB-01 6 33173952 33173953 GG - HSD17B8 Frame_Shift_Del 0.32 TCGA-G7-A8LB-01 6 43305593 43305593 G A ZNF318 Missense_Mutation p.S2048F 0.45 benign(0.022) TCGA-G7-A8LB-01 6 44140108 44140108 C A CAPN11 Missense_Mutation p.P160H 0.59 deleterious(0) probably_damaging(1) TCGA-G7-A8LB-01 6 80626118 80626118 A T ELOVL4 3'UTR 0.56 TCGA-G7-A8LB-01 6 89614664 89614664 C A RNGTT Missense_Mutation p.A152S 0.47 tolerated(0.09) probably_damaging(0.954) TCGA-G7-A8LB-01 7 100253150 100253150 C T ACTL6B Silent p.L54L 0.33 TCGA-G7-A8LB-01 7 133059613 133059615 GAC - EXOC4 In_Frame_Del p.D347del 0.58 TCGA-G7-A8LB-01 7 158663903 158663903 T C WDR60 Missense_Mutation p.M47T 0.65 tolerated(0.29) benign(0) TCGA-G7-A8LB-01 7 30795228 30795228 T G INMT Missense_Mutation p.S185A 0.23 tolerated(0.12) benign(0.02) TCGA-G7-A8LB-01 7 75615805 75615805 T C POR 3'UTR 0.40 TCGA-G7-A8LB-01 7 87516694 87516695 AA - DBF4 Frame_Shift_Del p.K168Nfs*5 0.36 TCGA-G7-A8LB-01 7 90897421 90897421 A C FZD1 3'UTR 0.64 TCGA-G7-A8LB-01 7 95668656 95668656 G T DYNC1I1 Missense_Mutation p.A495S 0.62 tolerated(0.15) probably_damaging(0.999) TCGA-G7-A8LB-01 7 99725947 99725947 C G MBLAC1 3'UTR 0.35 TCGA-G7-A8LB-01 8 103273473 103273473 A T UBR5 Silent p.P2619P 0.40 TCGA-G7-A8LB-01 8 135817167 135817167 A T MIR30D RNA 0.54 TCGA-G7-A8LB-01 8 145745846 145745846 T G LRRC14 Missense_Mutation p.L185R 0.43 deleterious(0) probably_damaging(0.999) TCGA-G7-A8LB-01 8 2026963 2026963 G T MYOM2 Missense_Mutation p.V471F 0.52 tolerated(0.06) benign(0.016) TCGA-G7-A8LB-01 8 86127030 86127030 T C C8orf59 Intron 0.49 TCGA-G7-A8LB-01 8 99441932 99441932 T G KCNS2 3'UTR 0.46 TCGA-G7-A8LB-01 9 125682147 125682147 T C ZBTB26 Missense_Mutation p.M23V 0.46 deleterious(0) possibly_damaging(0.795) TCGA-G7-A8LB-01 9 127215926 127215926 C G GPR144 Missense_Mutation p.P317R 0.41 tolerated(0.1) probably_damaging(0.987) TCGA-G7-A8LB-01 9 139750216 139750216 G A MAMDC4 Missense_Mutation p.G502S 0.68 deleterious(0.01) probably_damaging(1) TCGA-G7-A8LB-01 9 14776064 14776064 G A FREM1 Missense_Mutation p.P1527L 0.47 deleterious(0) benign(0.064) TCGA-G7-A8LB-01 9 4701924 4701925 - T CDC37L1 Frame_Shift_Ins p.R271Kfs*56 0.31 TCGA-G7-A8LB-01 X 105199587 105199587 G A NRK Missense_Mutation p.V1583I 0.94 deleterious_low_confidence(0.02) possibly_damaging(0.761) TCGA-G7-A8LB-01 X 109694786 109694786 C T RGAG1 Missense_Mutation p.S314F 0.98 deleterious(0.01) benign(0.06) TCGA-G7-A8LC-01 11 103907571 103907571 C T PDGFD Intron 0.41 TCGA-G7-A8LC-01 11 31811293 31811293 T A PAX6 3'UTR 0.40 TCGA-G7-A8LC-01 11 3733757 3733757 C T NUP98 Intron 0.33 TCGA-G7-A8LC-01 12 57110715 57110715 A G NACA Intron 0.33 TCGA-G7-A8LC-01 12 64377636 64377636 T A SRGAP1 Intron 0.18 TCGA-G7-A8LC-01 14 51131967 51131969 GTC TA SAV1 Frame_Shift_Del p.D155Yfs*34 0.30 TCGA-G7-A8LC-01 14 75276483 75276483 A T YLPM1 Missense_Mutation p.D1641V 0.61 probably_damaging(0.998) TCGA-G7-A8LC-01 19 35176685 35176685 T G ZNF302 3'UTR 0.27 TCGA-G7-A8LC-01 19 45404062 45404062 G A TOMM40 Missense_Mutation p.R240Q 0.44 tolerated(0.63) benign(0.096) TCGA-G7-A8LC-01 1 16063203 16063203 G T SLC25A34 Missense_Mutation p.A75S 0.07 deleterious(0.01) probably_damaging(0.97) TCGA-G7-A8LC-01 1 1663695 1663695 A G SLC35E2 3'UTR 0.33 TCGA-G7-A8LC-01 1 185159736 185159736 C G SWT1 Missense_Mutation p.H495Q 0.70 deleterious(0.01) benign(0.275) TCGA-G7-A8LC-01 1 37948521 37948521 A T ZC3H12A Missense_Mutation p.E370V 0.69 tolerated(0.24) benign(0.08) TCGA-G7-A8LC-01 2 216878169 216878169 G A MREG 5'UTR 0.50 TCGA-G7-A8LC-01 2 86327152 86327152 C T POLR1A Missense_Mutation p.C74Y 0.05 deleterious(0) probably_damaging(0.988) TCGA-G7-A8LC-01 5 1420693 1420693 G A SLC6A3 Silent p.C306C 0.45 TCGA-G7-A8LC-01 6 32138345 32138345 G A AGPAT1 Missense_Mutation p.P123S 0.07 deleterious(0.01) benign(0.089) TCGA-G7-A8LC-01 7 103018130 103018130 G A SLC26A5 Silent p.P634P 0.08 TCGA-G7-A8LC-01 7 123672482 123672482 C T TMEM229A Silent p.Q192Q 0.10 TCGA-G7-A8LC-01 8 140898201 140898201 G A TRAPPC9 Missense_Mutation p.R1091C 0.75 tolerated(0.1) benign(0.002) TCGA-G7-A8LC-01 8 8235196 8235196 C A SGK223 Missense_Mutation p.R241S 0.10 benign(0.162) TCGA-G7-A8LD-01 10 34673133 34673133 G A PARD3 Missense_Mutation p.H314Y 0.15 deleterious(0) benign(0.044) TCGA-G7-A8LD-01 11 69588117 69588117 G A FGF4 Missense_Mutation p.S194L 0.46 deleterious(0) possibly_damaging(0.851) TCGA-G7-A8LD-01 12 56623088 56623088 T - NABP2 3'UTR 0.28 TCGA-G7-A8LD-01 12 63544413 63544413 G C AVPR1A Silent p.G68G 0.19 TCGA-G7-A8LD-01 13 46287523 46287523 G A SPERT Silent p.V121V 0.82 TCGA-G7-A8LD-01 13 84456227 84456227 G A SLITRK1 5'UTR 0.16 TCGA-G7-A8LD-01 16 85832953 85832953 C T EMC8 5'UTR 0.92 TCGA-G7-A8LD-01 16 8619801 8619801 T A TMEM114 Nonsense_Mutation p.R116* 0.40 TCGA-G7-A8LD-01 17 21318791 21318791 T A KCNJ12 Missense_Mutation p.F46Y 0.09 tolerated(0.35) probably_damaging(0.999) TCGA-G7-A8LD-01 17 59533947 59533947 C T TBX4 Silent p.P32P 0.03 TCGA-G7-A8LD-01 19 19646459 19646459 T C YJEFN3 Missense_Mutation p.I222T 0.06 tolerated(0.06) probably_damaging(0.96) TCGA-G7-A8LD-01 19 19674395 19674395 C T PBX4 Missense_Mutation p.A319T 0.45 tolerated(0.26) benign(0.01) TCGA-G7-A8LD-01 19 36004269 36004269 C T DMKN Missense_Mutation p.E37K 0.19 deleterious(0) probably_damaging(0.969) TCGA-G7-A8LD-01 19 50185321 50185321 G A PRMT1 Missense_Mutation p.G116E 0.47 deleterious(0) probably_damaging(0.988) TCGA-G7-A8LD-01 19 53453491 53453491 C G ZNF816 Missense_Mutation p.E513Q 0.09 deleterious(0.03) benign(0.436) TCGA-G7-A8LD-01 19 56274128 56274128 C A RFPL4A Missense_Mutation p.H151N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-G7-A8LD-01 19 56388499 56388499 T C NLRP4 Missense_Mutation p.L888P 0.31 deleterious(0) probably_damaging(0.996) TCGA-G7-A8LD-01 1 156084843 156084843 A G LMNA Missense_Mutation p.Y45C 0.29 deleterious(0) probably_damaging(0.955) TCGA-G7-A8LD-01 1 17548815 17548815 G A PADI1 Silent p.R41R 0.04 TCGA-G7-A8LD-01 1 180843054 180843054 T G XPR1 Missense_Mutation p.V595G 0.37 deleterious(0) benign(0.213) TCGA-G7-A8LD-01 1 228560567 228560567 C G OBSCN Missense_Mutation p.A8320G 0.33 possibly_damaging(0.63) TCGA-G7-A8LD-01 1 41284206 41284206 G A KCNQ4 Missense_Mutation p.V188I 0.07 deleterious(0.03) benign(0.221) TCGA-G7-A8LD-01 20 23065706 23065706 G A CD93 Missense_Mutation p.P375L 0.43 tolerated(0.13) benign(0.058) TCGA-G7-A8LD-01 20 51589775 51589775 G A TSHZ2 5'UTR 0.45 TCGA-G7-A8LD-01 20 6031523 6031523 G T LRRN4 Missense_Mutation p.N254K 0.61 tolerated(0.13) benign(0.011) TCGA-G7-A8LD-01 20 60992282 60992282 G T RBBP8NL Missense_Mutation p.N66K 0.06 deleterious(0) benign(0.305) TCGA-G7-A8LD-01 21 27107131 27107131 A G GABPA 5'UTR 0.10 TCGA-G7-A8LD-01 21 38115795 38115795 T C SIM2 Missense_Mutation p.L369S 0.41 tolerated(0.78) benign(0.009) TCGA-G7-A8LD-01 21 47831608 47831608 A G PCNT Missense_Mutation p.N1874S 0.44 benign(0.002) TCGA-G7-A8LD-01 2 125405341 125405341 A T CNTNAP5 Missense_Mutation p.K627M 0.42 deleterious(0.03) possibly_damaging(0.841) TCGA-G7-A8LD-01 2 133540804 133540804 T C NCKAP5 Missense_Mutation p.K1194E 0.19 tolerated(1) benign(0.117) TCGA-G7-A8LD-01 2 135214113 135214113 G A TMEM163 3'UTR 0.24 TCGA-G7-A8LD-01 2 136399272 136399272 A T R3HDM1 Missense_Mutation p.Q462H 0.22 deleterious(0.05) benign(0.281) TCGA-G7-A8LD-01 2 149853801 149853801 C A KIF5C Missense_Mutation p.Q683K 0.44 tolerated(1) benign(0) TCGA-G7-A8LD-01 2 219492822 219492822 C T PLCD4 Silent p.F281F 0.46 TCGA-G7-A8LD-01 2 228855801 228855801 C T SPHKAP Missense_Mutation p.R1625Q 0.41 deleterious(0) probably_damaging(0.989) TCGA-G7-A8LD-01 2 232325488 232325488 C G NCL Missense_Mutation p.D235H 0.12 benign(0.004) TCGA-G7-A8LD-01 2 239164455 239164455 C T PER2 Silent p.K721K 0.41 TCGA-G7-A8LD-01 2 54895827 54895827 T A SPTBN1 3'UTR 0.20 TCGA-G7-A8LD-01 2 55772097 55772138 AGGAGATTGCTTGCAGAGAAACTCAAAGAAGAAGTTATTAAT - CCDC104 In_Frame_Del p.R328_N341del 0.22 TCGA-G7-A8LD-01 2 61522309 61522309 C T USP34 Silent p.E1457E 0.06 TCGA-G7-A8LD-01 3 12475800 12475800 A G PPARG 3'UTR 0.20 TCGA-G7-A8LD-01 3 139092573 139092573 C T COPB2 Missense_Mutation p.V277M 0.31 tolerated(0.11) benign(0.029) TCGA-G7-A8LD-01 3 15616583 15616583 C A HACL1 Missense_Mutation p.L270F 0.42 deleterious(0) probably_damaging(0.976) TCGA-G7-A8LD-01 3 52437709 52437709 G - BAP1 Frame_Shift_Del p.S485Hfs*86 0.41 TCGA-G7-A8LD-01 4 114257900 114257915 AGATGCACCAACCTTA - ANK2 Frame_Shift_Del p.A1255Yfs*5 0.81 TCGA-G7-A8LD-01 4 9783578 9783578 G A DRD5 5'UTR 0.46 TCGA-G7-A8LD-01 5 132556553 132556553 T G FSTL4 Missense_Mutation p.S449R 0.40 deleterious(0.01) probably_damaging(0.966) TCGA-G7-A8LD-01 5 140229249 140229249 C T PCDHA9 Missense_Mutation p.T390M 0.43 tolerated_low_confidence(0.09) benign(0.104) TCGA-G7-A8LD-01 6 158565380 158565380 C T SERAC1 Missense_Mutation p.S187N 0.44 deleterious(0.01) benign(0.013) TCGA-G7-A8LD-01 6 27419747 27419747 C G ZNF184 Missense_Mutation p.E531Q 0.20 tolerated(0.08) possibly_damaging(0.542) TCGA-G7-A8LD-01 6 42025251 42025251 G A TAF8 Silent p.P163P 0.86 TCGA-G7-A8LD-01 6 64776325 64776325 A C EYS Missense_Mutation p.S2211A 0.02 tolerated(0.25) benign(0.006) TCGA-G7-A8LD-01 6 99285377 99285377 T G POU3F2 3'UTR 0.86 TCGA-G7-A8LD-01 7 100679220 100679220 C T MUC17 Missense_Mutation p.T1508M 0.55 unknown(0) TCGA-G7-A8LD-01 7 154598747 154598747 G T DPP6 Missense_Mutation p.D531Y 0.17 tolerated(0.07) probably_damaging(0.927) TCGA-G7-A8LD-01 7 34979806 34979806 T C DPY19L1 Missense_Mutation p.Q535R 0.31 deleterious(0) possibly_damaging(0.901) TCGA-G7-A8LD-01 7 56007671 56007671 G A ZNF713 Missense_Mutation p.R422H 0.25 tolerated(0.07) benign(0.197) TCGA-G7-A8LD-01 7 98257939 98257939 T C NPTX2 Nonstop_Mutation p.*432Qext*21 0.43 TCGA-G7-A8LD-01 8 104924348 104924348 G A RIMS2 Missense_Mutation p.R587H 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G7-A8LD-01 8 124109586 124109586 A C TBC1D31 Silent p.R246R 0.30 TCGA-G7-A8LD-01 8 144654890 144654890 C T MROH6 5'UTR 0.56 TCGA-G7-A8LD-01 9 131872960 131872960 C G CRAT 5'UTR 0.56 TCGA-G7-A8LD-01 9 72728040 72728040 G C MAMDC2 Missense_Mutation p.S212T 0.37 tolerated(0.14) benign(0.403) TCGA-G7-A8LD-01 9 95077665 95077665 A G NOL8 Silent p.N414N 0.56 TCGA-G7-A8LD-01 X 128652406 128652406 G A SMARCA1 Nonsense_Mutation p.Q65* 0.90 TCGA-G7-A8LE-01 10 108389090 108389090 A C SORCS1 Silent p.S844S 0.44 TCGA-G7-A8LE-01 10 132896657 132896657 T G TCERG1L Missense_Mutation p.K506Q 0.32 tolerated(0.1) possibly_damaging(0.552) TCGA-G7-A8LE-01 10 6557092 6557092 C T PRKCQ Silent p.S2S 0.27 TCGA-G7-A8LE-01 10 74127978 74127978 C G MICU1 Missense_Mutation p.W469S 0.44 tolerated(0.06) possibly_damaging(0.601) TCGA-G7-A8LE-01 10 82264502 82264502 C A TSPAN14 Missense_Mutation p.L34I 0.39 tolerated(0.13) benign(0.033) TCGA-G7-A8LE-01 10 98113234 98113234 C - OPALIN Intron 0.23 TCGA-G7-A8LE-01 10 99340611 99340611 G C ANKRD2 Splice_Site p.X180_splice 0.35 TCGA-G7-A8LE-01 11 118766041 118766041 G - BCL9L 3'UTR 0.29 TCGA-G7-A8LE-01 11 2906711 2906711 G T CDKN1C Missense_Mutation p.D3E 0.39 deleterious(0.01) possibly_damaging(0.67) TCGA-G7-A8LE-01 11 45277403 45277403 C T SYT13 Missense_Mutation p.A75T 0.32 tolerated(0.72) benign(0.005) TCGA-G7-A8LE-01 11 559386 559386 T A C11orf35 Intron 0.24 TCGA-G7-A8LE-01 11 57427119 57427121 TGA - CLP1 In_Frame_Del p.D58del 0.36 TCGA-G7-A8LE-01 11 617189 617191 GAC - CDHR5 3'UTR 0.29 TCGA-G7-A8LE-01 11 68029170 68029172 CTT - C11orf24 In_Frame_Del p.K431del 0.36 TCGA-G7-A8LE-01 11 7063888 7063888 A C NLRP14 Missense_Mutation p.K211Q 0.35 tolerated(0.11) benign(0.049) TCGA-G7-A8LE-01 11 801091 801091 G A PIDD Silent p.L554L 0.39 TCGA-G7-A8LE-01 12 125432344 125432344 C T DHX37 3'UTR 0.38 TCGA-G7-A8LE-01 12 29608320 29608320 G C OVCH1 Missense_Mutation p.L767V 0.35 deleterious(0) probably_damaging(0.972) TCGA-G7-A8LE-01 12 29608321 29608321 T C OVCH1 Silent p.P766P 0.35 TCGA-G7-A8LE-01 12 30792659 30792659 A C IPO8 Missense_Mutation p.L760R 0.45 tolerated(0.21) benign(0.046) TCGA-G7-A8LE-01 12 40158612 40158612 G C SLC2A13 Nonsense_Mutation p.Y498* 0.29 TCGA-G7-A8LE-01 12 40441958 40441958 A - SLC2A13 Frame_Shift_Del p.L204* 0.27 TCGA-G7-A8LE-01 12 49434397 49434397 G C KMT2D Missense_Mutation p.R2386G 0.36 probably_damaging(0.994) TCGA-G7-A8LE-01 12 50410456 50410456 G - RACGAP1 Frame_Shift_Del p.V16Cfs*43 0.33 TCGA-G7-A8LE-01 12 59271539 59271539 T C LRIG3 Missense_Mutation p.K727E 0.46 deleterious(0) benign(0.217) TCGA-G7-A8LE-01 12 78400770 78400770 C A NAV3 Silent p.V484V 0.38 TCGA-G7-A8LE-01 12 7842823 7842823 C G GDF3 Missense_Mutation p.R249T 0.40 deleterious(0) possibly_damaging(0.848) TCGA-G7-A8LE-01 12 80982096 80982096 T C PTPRQ Missense_Mutation p.Y1488H 0.37 tolerated(0.48) possibly_damaging(0.771) TCGA-G7-A8LE-01 13 108885777 108885777 G C ABHD13 3'UTR 0.39 TCGA-G7-A8LE-01 13 115090748 115090748 T G CHAMP1 Silent p.P477P 0.38 TCGA-G7-A8LE-01 14 102027761 102027761 G A DIO3 5'UTR 0.40 TCGA-G7-A8LE-01 14 51026916 51026916 A G ATL1 5'UTR 0.40 TCGA-G7-A8LE-01 15 41672645 41672645 G C NUSAP1 3'Flank 0.42 TCGA-G7-A8LE-01 15 75320600 75320600 G A PPCDC 5'UTR 0.43 TCGA-G7-A8LE-01 15 79254457 79254457 G A RASGRF1 3'UTR 0.34 TCGA-G7-A8LE-01 15 85166679 85166682 TATT - ZSCAN2 3'UTR 0.32 TCGA-G7-A8LE-01 16 726998 726998 C T RHBDL1 Missense_Mutation p.R217C 0.45 tolerated(0.06) possibly_damaging(0.543) TCGA-G7-A8LE-01 17 17120495 17120495 A C FLCN Missense_Mutation p.V355G 0.59 deleterious(0) probably_damaging(0.983) TCGA-G7-A8LE-01 17 3629517 3629517 A G GSG2 Missense_Mutation p.N763S 0.58 tolerated(0.35) benign(0.001) TCGA-G7-A8LE-01 17 36889563 36889563 C T CISD3 Missense_Mutation p.T80I 0.51 tolerated(0.76) probably_damaging(0.979) TCGA-G7-A8LE-01 17 41960406 41960406 C G MPP2 Silent p.T106T 0.11 TCGA-G7-A8LE-01 17 45915920 45915920 A G SCRN2 Silent p.L305L 0.29 TCGA-G7-A8LE-01 17 48549861 48549861 T C ACSF2 Missense_Mutation p.Y466H 0.53 deleterious(0.01) probably_damaging(1) TCGA-G7-A8LE-01 17 5354241 5354241 C T DHX33 Silent p.A470A 0.22 TCGA-G7-A8LE-01 17 6909258 6909258 C A ALOX12 Missense_Mutation p.P444T 0.24 deleterious(0.02) probably_damaging(0.966) TCGA-G7-A8LE-01 17 78184124 78184124 C A SGSH 3'UTR 0.61 TCGA-G7-A8LE-01 17 8296546 8296546 G - RNF222 Frame_Shift_Del p.S79Pfs*138 0.33 TCGA-G7-A8LE-01 18 19112541 19112541 C A ESCO1 Missense_Mutation p.W756C 0.40 deleterious(0.01) probably_damaging(1) TCGA-G7-A8LE-01 19 17953323 17953323 C G JAK3 Silent p.L221L 0.35 TCGA-G7-A8LE-01 19 38572197 38572197 C A SIPA1L3 5'UTR 0.43 TCGA-G7-A8LE-01 19 38704380 38704380 T C DPF1 Silent p.L332L 0.38 TCGA-G7-A8LE-01 19 54485656 54485656 C G CACNG8 Missense_Mutation p.S277R 0.29 tolerated(0.15) possibly_damaging(0.455) TCGA-G7-A8LE-01 19 56896344 56896344 C G ZNF582 Missense_Mutation p.E148Q 0.42 tolerated(0.06) benign(0.082) TCGA-G7-A8LE-01 19 6821672 6821672 G A VAV1 Missense_Mutation p.A121T 0.35 deleterious(0) probably_damaging(0.999) TCGA-G7-A8LE-01 19 8961960 8961960 C T MUC16 Missense_Mutation p.G14473S 0.29 possibly_damaging(0.675) TCGA-G7-A8LE-01 1 110741112 110741112 C A SLC6A17 3'UTR 0.32 TCGA-G7-A8LE-01 1 11854058 11854058 A G MTHFR Missense_Mutation p.I479T 0.86 deleterious(0.03) benign(0.14) TCGA-G7-A8LE-01 1 172017810 172017810 A C DNM3 Missense_Mutation p.K419Q 0.77 tolerated(0.11) benign(0.244) TCGA-G7-A8LE-01 1 6267482 6267482 G T RNF207 Missense_Mutation p.D79Y 0.80 deleterious(0) probably_damaging(0.999) TCGA-G7-A8LE-01 20 10620302 10620302 T - JAG1 Frame_Shift_Del p.A1168Pfs*12 0.32 TCGA-G7-A8LE-01 20 25282895 25282895 T C ABHD12 Missense_Mutation p.K373E 0.41 tolerated(0.1) probably_damaging(0.998) TCGA-G7-A8LE-01 22 19839753 19839753 G T C22orf29 Missense_Mutation p.P11H 0.31 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-G7-A8LE-01 22 37603060 37603060 G T SSTR3 Silent p.A261A 0.40 TCGA-G7-A8LE-01 2 100017630 100017630 A G REV1 3'UTR 0.34 TCGA-G7-A8LE-01 2 100916274 100916274 A G LONRF2 Missense_Mutation p.L391P 0.32 tolerated(0.07) possibly_damaging(0.768) TCGA-G7-A8LE-01 2 113074893 113074893 C G ZC3H6 Missense_Mutation p.N320K 0.35 deleterious(0) probably_damaging(0.997) TCGA-G7-A8LE-01 2 113999196 113999196 C T PAX8 Missense_Mutation p.E237K 0.28 deleterious(0.01) benign(0.001) TCGA-G7-A8LE-01 2 133540450 133540451 - A NCKAP5 Frame_Shift_Ins p.L1312Sfs*56 0.28 TCGA-G7-A8LE-01 2 152214172 152214172 A G TNFAIP6 5'UTR 0.30 TCGA-G7-A8LE-01 2 169997040 169997040 A C LRP2 Missense_Mutation p.I4375S 0.33 benign(0.206) TCGA-G7-A8LE-01 2 172848147 172848147 G T HAT1 Nonsense_Mutation p.E381* 0.40 TCGA-G7-A8LE-01 2 182543486 182543486 G C NEUROD1 Missense_Mutation p.H34Q 0.41 tolerated(0.4) benign(0.001) TCGA-G7-A8LE-01 2 55863466 55863466 T C PNPT1 Missense_Mutation p.Q753R 0.39 deleterious(0.02) possibly_damaging(0.641) TCGA-G7-A8LE-01 2 71047715 71047715 C T CLEC4F 5'UTR 0.36 TCGA-G7-A8LE-01 3 100295846 100295846 C A TMEM45A Nonsense_Mutation p.S271* 0.33 TCGA-G7-A8LE-01 3 113955534 113955536 CTC - ZNF80 In_Frame_Del p.G129del 0.42 TCGA-G7-A8LE-01 3 151046672 151046672 C T P2RY13 Missense_Mutation p.G58S 0.36 deleterious(0.03) possibly_damaging(0.587) TCGA-G7-A8LE-01 3 179052413 179052413 G C ZNF639 3'UTR 0.45 TCGA-G7-A8LE-01 3 184299386 184299386 C G EPHB3 Missense_Mutation p.N991K 0.41 tolerated(0.35) benign(0.434) TCGA-G7-A8LE-01 3 197726166 197726166 G A LMLN Silent p.Q395Q 0.43 TCGA-G7-A8LE-01 3 20189921 20189921 G A KAT2B Missense_Mutation p.M749I 0.45 tolerated(0.05) benign(0.034) TCGA-G7-A8LE-01 3 52443594 52443594 T C BAP1 Missense_Mutation p.Y33C 0.05 deleterious(0) probably_damaging(0.983) TCGA-G7-A8LE-01 3 87276498 87276498 C T CHMP2B 5'UTR 0.08 TCGA-G7-A8LE-01 4 170354709 170354709 T G NEK1 Missense_Mutation p.T958P 0.34 tolerated(0.15) benign(0.002) TCGA-G7-A8LE-01 4 187629813 187629814 - AAA FAT1 Nonsense_Mutation p.K390delinsI* 0.43 TCGA-G7-A8LE-01 5 102508902 102508902 G C PPIP5K2 Missense_Mutation p.G777A 0.43 tolerated(0.25) benign(0.029) TCGA-G7-A8LE-01 5 132197228 132197228 G T GDF9 3'UTR 0.26 TCGA-G7-A8LE-01 5 135207327 135207327 T C SLC25A48 Intron 0.32 TCGA-G7-A8LE-01 5 140718667 140718667 C G PCDHGA2 Silent p.S43S 0.43 TCGA-G7-A8LE-01 5 142662143 142662143 G C NR3C1 Missense_Mutation p.S725C 0.40 deleterious(0.02) probably_damaging(1) TCGA-G7-A8LE-01 5 173372036 173372036 A G CPEB4 Missense_Mutation p.H450R 0.40 tolerated(0.21) benign(0.272) TCGA-G7-A8LE-01 5 35014199 35014199 C T AGXT2 Missense_Mutation p.G330D 0.40 deleterious(0) probably_damaging(1) TCGA-G7-A8LE-01 6 116784681 116784681 T A FAM26F Missense_Mutation p.M254K 0.39 tolerated(0.94) benign(0.064) TCGA-G7-A8LE-01 6 134349788 134349788 T A SLC2A12 Missense_Mutation p.Y392F 0.35 tolerated(0.5) benign(0.005) TCGA-G7-A8LE-01 6 27879766 27879766 T C OR2B2 Missense_Mutation p.E111G 0.40 deleterious(0) probably_damaging(0.999) TCGA-G7-A8LE-01 6 30620950 30620951 - T C6orf136 3'UTR 0.30 TCGA-G7-A8LE-01 6 31629915 31629915 C T GPANK1 3'UTR 0.41 TCGA-G7-A8LE-01 6 56489406 56489406 T G DST Silent p.R1080R 0.37 TCGA-G7-A8LE-01 7 116423413 116423413 T C MET Missense_Mutation p.Y1248H 0.54 deleterious(0) probably_damaging(0.999) TCGA-G7-A8LE-01 7 117358121 117358122 GG - CTTNBP2 Frame_Shift_Del p.P1566Cfs*7 0.35 TCGA-G7-A8LE-01 7 129847790 129847790 C T SSMEM1 Missense_Mutation p.P14S 0.55 tolerated(0.14) possibly_damaging(0.803) TCGA-G7-A8LE-01 7 142636835 142636835 G C C7orf34 Missense_Mutation p.E64D 0.49 tolerated(0.09) benign(0.035) TCGA-G7-A8LE-01 7 65439617 65439617 A G GUSB Silent p.A380A 0.23 TCGA-G7-A8LE-01 8 134024148 134024148 T C TG Missense_Mutation p.S2089P 0.48 tolerated(0.21) benign(0.003) TCGA-G7-A8LE-01 8 98289181 98289181 A C TSPYL5 Missense_Mutation p.F298V 0.33 deleterious(0) probably_damaging(0.999) TCGA-G7-A8LE-01 9 128283854 128283854 A G MAPKAP1 Intron 0.44 TCGA-G7-A8LE-01 9 130939947 130939947 G T CIZ1 Silent p.P572P 0.45 TCGA-G7-A8LE-01 9 139347888 139347888 C T SEC16A Missense_Mutation p.A2051T 0.30 deleterious(0.01) possibly_damaging(0.544) TCGA-G7-A8LE-01 X 106960127 106960127 G T TSC22D3 Intron 0.11 TCGA-G7-A8LE-01 X 153216893 153216893 C G HCFC1 Missense_Mutation p.E1809Q 0.69 deleterious(0.02) probably_damaging(0.954) TCGA-G7-A8LE-01 X 15682914 15682914 A T TMEM27 5'UTR 0.73 TCGA-GL-6846-01 10 105763115 105763115 G A SLK Missense_Mutation p.G727S 0.44 tolerated(0.26) benign(0.005) TCGA-GL-6846-01 10 121692658 121692658 T C SEC23IP Missense_Mutation p.L967P 0.44 deleterious(0) probably_damaging(0.987) TCGA-GL-6846-01 10 127789653 127789653 G A ADAM12 Missense_Mutation p.A303V 0.09 deleterious(0.02) probably_damaging(0.985) TCGA-GL-6846-01 10 128788791 128788791 C G DOCK1 Missense_Mutation p.L133V 0.46 tolerated(0.2) benign(0.098) TCGA-GL-6846-01 10 31812949 31812949 G T ZEB1 Missense_Mutation p.R898L 0.38 deleterious(0) possibly_damaging(0.664) TCGA-GL-6846-01 10 375449 375449 A T DIP2C Missense_Mutation p.V1226D 0.44 deleterious(0) probably_damaging(0.999) TCGA-GL-6846-01 11 6048449 6048449 A G OR56A1 Silent p.L162L 0.44 TCGA-GL-6846-01 11 70282521 70282521 T C CTTN 3'UTR 0.42 TCGA-GL-6846-01 12 22623804 22623804 C T C2CD5 Silent p.Q800Q 0.26 TCGA-GL-6846-01 12 53586547 53586547 T C ITGB7 Missense_Mutation p.Q625R 0.59 tolerated(0.09) benign(0.016) TCGA-GL-6846-01 14 44975261 44975261 C T FSCB Silent p.A310A 0.44 TCGA-GL-6846-01 14 69352139 69352139 T C ACTN1 Intron 0.39 TCGA-GL-6846-01 14 90429932 90429932 G A TDP1 Silent p.L158L 0.41 TCGA-GL-6846-01 15 71341787 71341787 G A LRRC49 Missense_Mutation p.E638K 0.33 tolerated(0.47) benign(0.002) TCGA-GL-6846-01 15 71341790 71341790 G A LRRC49 Missense_Mutation p.D639N 0.35 tolerated(0.45) benign(0.029) TCGA-GL-6846-01 16 2814253 2814253 G A SRRM2 Missense_Mutation p.V1242I 0.23 unknown(0) TCGA-GL-6846-01 16 67702137 67702137 C G C16orf86 Nonsense_Mutation p.Y196* 0.56 TCGA-GL-6846-01 16 89662976 89662976 C A CPNE7 Missense_Mutation p.P617T 0.08 deleterious(0) probably_damaging(0.974) TCGA-GL-6846-01 16 89775318 89775318 G - VPS9D1 Frame_Shift_Del p.T549Pfs*32 0.32 TCGA-GL-6846-01 17 1538231 1538231 T C SCARF1 Missense_Mutation p.R772G 0.56 tolerated(0.45) benign(0.002) TCGA-GL-6846-01 17 26684350 26684350 G A POLDIP2 Missense_Mutation p.A41V 0.56 tolerated_low_confidence(0.52) benign(0) TCGA-GL-6846-01 17 26684351 26684351 C T POLDIP2 Missense_Mutation p.A41T 0.56 tolerated_low_confidence(0.38) benign(0) TCGA-GL-6846-01 17 26818545 26818545 G A SLC13A2 Missense_Mutation p.S271N 0.32 tolerated(0.21) possibly_damaging(0.58) TCGA-GL-6846-01 17 26919846 26919846 T C SPAG5 Missense_Mutation p.Q139R 0.57 deleterious_low_confidence(0.03) possibly_damaging(0.57) TCGA-GL-6846-01 17 28525358 28525358 C G SLC6A4 3'UTR 0.54 TCGA-GL-6846-01 17 3788622 3788622 C G CAMKK1 Missense_Mutation p.E120D 0.32 tolerated(0.37) benign(0.016) TCGA-GL-6846-01 17 5009512 5009512 A G ZNF232 Silent p.Y314Y 0.25 TCGA-GL-6846-01 17 66538845 66538846 AA - FAM20A Frame_Shift_Del p.F306Cfs*73 0.19 TCGA-GL-6846-01 17 73831766 73831766 G T UNC13D Silent p.L563L 0.32 TCGA-GL-6846-01 18 19997258 19997258 G A CTAGE1 Missense_Mutation p.R173W 0.43 deleterious(0) probably_damaging(0.924) TCGA-GL-6846-01 19 12246707 12246707 A C ZNF20 Missense_Mutation p.S6A 0.42 tolerated(0.07) benign(0.275) TCGA-GL-6846-01 19 15989568 15989572 GTCTC TT CYP4F2 3'UTR 0.20 TCGA-GL-6846-01 19 35617247 35617247 A G LGI4 Missense_Mutation p.V409A 0.44 tolerated(0.05) probably_damaging(0.923) TCGA-GL-6846-01 19 40520846 40520846 G A ZNF546 Missense_Mutation p.E557K 0.53 deleterious(0.03) benign(0.393) TCGA-GL-6846-01 19 41306603 41306603 T A EGLN2 Nonsense_Mutation p.C42* 0.32 TCGA-GL-6846-01 19 50666348 50666348 A G IZUMO2 Missense_Mutation p.L35P 0.25 deleterious(0) possibly_damaging(0.883) TCGA-GL-6846-01 19 6306653 6306653 C G ACER1 3'UTR 0.67 TCGA-GL-6846-01 1 100346675 100346675 C G AGL Missense_Mutation p.S648C 0.46 deleterious(0.03) benign(0.209) TCGA-GL-6846-01 1 171535917 171535917 G A PRRC2C Missense_Mutation p.E2163K 0.29 probably_damaging(0.991) TCGA-GL-6846-01 1 230841797 230841797 A T AGT Missense_Mutation p.F336I 0.43 tolerated(0.65) benign(0.035) TCGA-GL-6846-01 20 19665982 19665982 C T SLC24A3 Missense_Mutation p.P434L 0.40 tolerated(0.19) benign(0.016) TCGA-GL-6846-01 20 44574469 44574469 A C PCIF1 Missense_Mutation p.I430L 0.35 tolerated(1) benign(0) TCGA-GL-6846-01 20 47641990 47641990 C T ARFGEF2 Silent p.Y1632Y 0.39 TCGA-GL-6846-01 21 45978008 45978008 G A KRTAP10-3 Silent p.L197L 0.50 TCGA-GL-6846-01 22 24175838 24175839 - T SMARCB1 Frame_Shift_Ins p.T357Dfs*4 0.47 TCGA-GL-6846-01 22 24376512 24376512 C T GSTT1 Missense_Mutation p.E212K 0.08 tolerated(0.4) benign(0.002) TCGA-GL-6846-01 2 179611166 179611166 C T TTN Intron 0.29 TCGA-GL-6846-01 2 197986231 197986231 T C ANKRD44 Missense_Mutation p.H244R 0.37 deleterious(0) probably_damaging(0.998) TCGA-GL-6846-01 2 20518349 20518349 C T PUM2 Missense_Mutation p.G37S 0.38 tolerated_low_confidence(0.06) benign(0.046) TCGA-GL-6846-01 2 208632800 208632800 A G FZD5 Missense_Mutation p.C222R 0.45 deleterious(0) probably_damaging(0.98) TCGA-GL-6846-01 2 219503380 219503380 G T ZNF142 Silent p.T1582T 0.22 TCGA-GL-6846-01 2 99232895 99232895 A T UNC50 Missense_Mutation p.H181L 0.42 tolerated(0.65) benign(0.061) TCGA-GL-6846-01 3 113721375 113721375 C A KIAA1407 Missense_Mutation p.E663D 0.31 tolerated(0.05) benign(0.189) TCGA-GL-6846-01 3 121217327 121217327 T G POLQ Missense_Mutation p.K717T 0.53 deleterious(0) probably_damaging(0.996) TCGA-GL-6846-01 3 169706125 169706125 C T SEC62 Silent p.A236A 0.27 TCGA-GL-6846-01 3 195006526 195006526 T C ACAP2 Silent p.P745P 0.13 TCGA-GL-6846-01 3 197687145 197687145 G A LMLN Missense_Mutation p.G18D 0.19 tolerated_low_confidence(0.43) benign(0.004) TCGA-GL-6846-01 3 48436087 48436087 A G FBXW12 Missense_Mutation p.D453G 0.31 tolerated(0.36) benign(0.051) TCGA-GL-6846-01 4 106157461 106157461 G T TET2 Nonsense_Mutation p.E788* 0.50 TCGA-GL-6846-01 4 122853525 122853525 G A TRPC3 Silent p.S296S 0.32 TCGA-GL-6846-01 4 187530418 187530418 T A FAT1 Silent p.I3375I 0.40 TCGA-GL-6846-01 4 48598002 48598003 TT - FRYL Frame_Shift_Del p.K350Nfs*11 0.27 TCGA-GL-6846-01 5 137474383 137474386 CTCC GAG NME5 Frame_Shift_Del p.E28Dfs*43 0.56 TCGA-GL-6846-01 5 141336615 141336615 C T PCDH12 Missense_Mutation p.A268T 0.37 deleterious(0) probably_damaging(1) TCGA-GL-6846-01 5 177642285 177642285 C T PHYKPL Silent p.G358G 0.51 TCGA-GL-6846-01 5 180166694 180166694 C T OR2Y1 Missense_Mutation p.R122H 0.30 deleterious(0.02) benign(0.308) TCGA-GL-6846-01 5 76344781 76344781 C A AGGF1 Missense_Mutation p.T445N 0.47 deleterious(0.01) possibly_damaging(0.784) TCGA-GL-6846-01 6 150289835 150289835 C A ULBP1 Missense_Mutation p.P60T 0.47 tolerated(0.7) benign(0.007) TCGA-GL-6846-01 6 168344092 168344092 T A MLLT4 Missense_Mutation p.L1052Q 0.43 deleterious(0) probably_damaging(0.967) TCGA-GL-6846-01 6 24418322 24418322 A T MRS2 Missense_Mutation p.S283C 0.44 deleterious(0) probably_damaging(0.917) TCGA-GL-6846-01 6 36454734 36454734 C T KCTD20 Missense_Mutation p.R348C 0.37 deleterious(0.04) probably_damaging(0.985) TCGA-GL-6846-01 7 107808822 107808822 G A NRCAM Silent p.S1071S 0.33 TCGA-GL-6846-01 7 5568236 5568236 T C ACTB Missense_Mutation p.T160A 0.65 deleterious_low_confidence(0.03) benign(0.017) TCGA-GL-6846-01 7 6639834 6639834 T G C7orf26 Missense_Mutation p.F319V 0.64 tolerated(0.4) possibly_damaging(0.504) TCGA-GL-6846-01 7 95125264 95125264 G A ASB4 Missense_Mutation p.D128N 0.23 tolerated(0.27) benign(0.015) TCGA-GL-6846-01 8 61654762 61654762 T C CHD7 Silent p.H257H 0.39 TCGA-GL-6846-01 9 135917679 135917679 T A GTF3C5 Missense_Mutation p.I120N 0.38 deleterious(0.01) benign(0.085) TCGA-GL-6846-01 9 135917680 135917680 T A GTF3C5 Silent p.I120I 0.39 TCGA-GL-6846-01 9 139846817 139846819 TGC - LCN12 In_Frame_Del p.L14del 0.28 TCGA-GL-6846-01 9 140943670 140943670 T C CACNA1B Silent p.L1205L 0.38 TCGA-GL-6846-01 9 16552614 16552615 - GAA BNC2 In_Frame_Ins p.F194dup 0.30 TCGA-GL-6846-01 9 8460558 8460558 G T PTPRD Missense_Mutation p.T1243N 0.42 deleterious(0) possibly_damaging(0.842) TCGA-GL-7773-01 10 115365937 115365937 G T NRAP Missense_Mutation p.D1269E 0.30 tolerated(0.52) benign(0.084) TCGA-GL-7773-01 10 115365938 115365938 T A NRAP Missense_Mutation p.D1269V 0.29 deleterious(0) probably_damaging(0.918) TCGA-GL-7773-01 10 115365939 115365939 C A NRAP Missense_Mutation p.D1269Y 0.29 deleterious(0) probably_damaging(0.969) TCGA-GL-7773-01 10 13653627 13653627 T A PRPF18 Missense_Mutation p.S175T 0.39 tolerated(0.62) benign(0.002) TCGA-GL-7773-01 10 16941136 16941136 A G CUBN Silent p.P2819P 0.41 TCGA-GL-7773-01 10 6258717 6258717 C A PFKFB3 Missense_Mutation p.H139N 0.22 benign(0.001) TCGA-GL-7773-01 10 6258718 6258718 A T PFKFB3 Missense_Mutation p.H139L 0.22 benign(0.018) TCGA-GL-7773-01 10 6258719 6258719 T A PFKFB3 Missense_Mutation p.H139Q 0.22 benign(0.001) TCGA-GL-7773-01 11 113288847 113288847 C T DRD2 Silent p.E99E 0.27 TCGA-GL-7773-01 11 133816079 133816079 C T IGSF9B Missense_Mutation p.V47M 0.21 deleterious(0) probably_damaging(0.999) TCGA-GL-7773-01 11 58978386 58978386 A T MPEG1 Silent p.G651G 0.32 TCGA-GL-7773-01 11 62414079 62414080 AG - GANAB 5'UTR 0.19 TCGA-GL-7773-01 11 63885635 63885635 G A FLRT1 Silent p.E632E 0.40 TCGA-GL-7773-01 11 66617172 66617172 G C PC Missense_Mutation p.H1019Q 0.28 tolerated(0.11) benign(0.002) TCGA-GL-7773-01 11 94278647 94278649 TTT - FUT4 In_Frame_Del p.F450del 0.41 TCGA-GL-7773-01 12 10145838 10145838 A - CLEC1B Frame_Shift_Del p.H199Ifs*16 0.30 TCGA-GL-7773-01 12 10541382 10541382 G A KLRK1 Nonsense_Mutation p.R10* 0.43 TCGA-GL-7773-01 12 12318144 12318144 T A LRP6 Missense_Mutation p.Y544F 0.37 tolerated(0.56) benign(0.008) TCGA-GL-7773-01 12 29469910 29469910 T A FAR2 Nonsense_Mutation p.Y364* 0.39 TCGA-GL-7773-01 12 40758851 40758851 A G LRRK2 Silent p.L2463L 0.34 TCGA-GL-7773-01 12 45803213 45803213 G T ANO6 Missense_Mutation p.D673Y 0.36 deleterious(0) probably_damaging(1) TCGA-GL-7773-01 12 53203234 53203234 A T KRT4 Missense_Mutation p.V256E 0.25 deleterious(0.01) possibly_damaging(0.842) TCGA-GL-7773-01 13 115022697 115022697 G T CDC16 Missense_Mutation p.Q414H 0.32 tolerated(0.08) benign(0.014) TCGA-GL-7773-01 13 52548876 52548876 G A ATP7B Silent p.S160S 0.31 TCGA-GL-7773-01 14 101012903 101012903 G A BEGAIN Silent p.H37H 0.35 TCGA-GL-7773-01 14 105408067 105408067 T - AHNAK2 Frame_Shift_Del p.D4574Afs*2 0.27 TCGA-GL-7773-01 14 20944804 20944804 A C PNP 3'UTR 0.30 TCGA-GL-7773-01 14 24612672 24612672 G T PSME2 Missense_Mutation p.S222R 0.32 deleterious(0.03) benign(0.005) TCGA-GL-7773-01 14 24709984 24709984 G C TINF2 Silent p.A234A 0.24 TCGA-GL-7773-01 14 65008125 65008125 G A HSPA2 Silent p.L186L 0.29 TCGA-GL-7773-01 14 65008173 65008173 C A HSPA2 Missense_Mutation p.D202E 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GL-7773-01 14 70991146 70991146 T C ADAM20 Missense_Mutation p.Y160C 0.43 deleterious(0) probably_damaging(0.999) TCGA-GL-7773-01 14 74959964 74959964 G A NPC2 Missense_Mutation p.A5V 0.19 tolerated(0.4) benign(0.011) TCGA-GL-7773-01 14 77844646 77844646 G A SAMD15 Silent p.K295K 0.38 TCGA-GL-7773-01 14 79423648 79423648 G A NRXN3 Missense_Mutation p.R407Q 0.37 deleterious(0.03) probably_damaging(0.966) TCGA-GL-7773-01 14 95903278 95903278 A G SYNE3 Missense_Mutation p.F806S 0.45 tolerated(0.16) benign(0.045) TCGA-GL-7773-01 15 101887839 101887839 G A PCSK6 Intron 0.29 TCGA-GL-7773-01 15 28431846 28431846 T A HERC2 Missense_Mutation p.D2901V 0.39 probably_damaging(0.971) TCGA-GL-7773-01 15 35274327 35274327 T C ZNF770 Missense_Mutation p.K437E 0.39 deleterious(0.01) benign(0.058) TCGA-GL-7773-01 15 40758294 40758294 T C BAHD1 Missense_Mutation p.F770L 0.41 deleterious(0) benign(0.443) TCGA-GL-7773-01 15 51790750 51790750 T G DMXL2 Silent p.S1557S 0.36 TCGA-GL-7773-01 15 52498142 52498142 G T MYO5C Missense_Mutation p.P1470T 0.40 tolerated(0.07) possibly_damaging(0.562) TCGA-GL-7773-01 15 74327953 74327953 G A PML Intron 0.31 TCGA-GL-7773-01 16 15133833 15133833 C G NTAN1 Missense_Mutation p.G211A 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-GL-7773-01 16 28880661 28880661 C A SH2B1 Missense_Mutation p.D422E 0.36 tolerated(0.51) benign(0.004) TCGA-GL-7773-01 16 28925762 28925762 T A RABEP2 Missense_Mutation p.D230V 0.22 deleterious(0) benign(0.235) TCGA-GL-7773-01 16 30566419 30566419 A G ZNF764 3'UTR 0.50 TCGA-GL-7773-01 16 30775599 30775599 T C RNF40 Missense_Mutation p.L181P 0.31 deleterious(0) benign(0.12) TCGA-GL-7773-01 16 31340556 31340556 G T ITGAM Missense_Mutation p.V935F 0.36 deleterious(0.02) benign(0.012) TCGA-GL-7773-01 16 338194 338194 C A AXIN1 Missense_Mutation p.E839D 0.27 deleterious(0) possibly_damaging(0.533) TCGA-GL-7773-01 16 47684490 47684490 G T PHKB Missense_Mutation p.M611I 0.33 deleterious(0.01) benign(0.345) TCGA-GL-7773-01 16 4864623 4864623 G C GLYR1 Missense_Mutation p.A311G 0.28 deleterious(0) possibly_damaging(0.594) TCGA-GL-7773-01 16 68953020 68953020 A T TANGO6 Missense_Mutation p.R675S 0.36 deleterious(0.03) benign(0.244) TCGA-GL-7773-01 17 18150014 18150014 C T FLII Missense_Mutation p.C982Y 0.29 deleterious(0.03) benign(0.056) TCGA-GL-7773-01 17 46423341 46423341 T - SKAP1 Frame_Shift_Del p.D69Vfs*31 0.27 TCGA-GL-7773-01 17 46688052 46688052 C T HOXB7 Missense_Mutation p.G77S 0.50 tolerated(0.06) benign(0.026) TCGA-GL-7773-01 17 5353590 5353590 G T DHX33 Missense_Mutation p.S554Y 0.38 deleterious(0) probably_damaging(0.989) TCGA-GL-7773-01 17 65134124 65134124 T G HELZ Missense_Mutation p.Q959P 0.35 deleterious(0) probably_damaging(1) TCGA-GL-7773-01 17 65134125 65134125 G A HELZ Nonsense_Mutation p.Q959* 0.36 TCGA-GL-7773-01 17 71197359 71197359 A G COG1 Missense_Mutation p.I465V 0.36 tolerated(0.5) benign(0.003) TCGA-GL-7773-01 17 74277019 74277019 C A QRICH2 Missense_Mutation p.G1261C 0.26 deleterious(0) probably_damaging(0.997) TCGA-GL-7773-01 17 8077025 8077025 C G TMEM107 3'Flank 0.50 TCGA-GL-7773-01 18 8813135 8813135 C TT SOGA2 Frame_Shift_Ins p.W922Lfs*48 0.29 TCGA-GL-7773-01 19 13039366 13039366 C A FARSA Missense_Mutation p.Q236H 0.60 deleterious(0.03) probably_damaging(0.99) TCGA-GL-7773-01 19 35250173 35250173 T A ZNF599 Missense_Mutation p.E511D 0.41 deleterious(0.04) benign(0.059) TCGA-GL-7773-01 19 35250175 35250175 C A ZNF599 Nonsense_Mutation p.E511* 0.40 TCGA-GL-7773-01 19 46029471 46029471 C A VASP 3'UTR 0.60 TCGA-GL-7773-01 19 56370219 56370219 A G NLRP4 Missense_Mutation p.N487S 0.44 tolerated(0.36) benign(0.001) TCGA-GL-7773-01 19 7585576 7585576 G C ZNF358 Missense_Mutation p.R483T 0.37 tolerated_low_confidence(0.53) benign(0) TCGA-GL-7773-01 1 100680458 100680458 G T DBT Missense_Mutation p.T285N 0.38 tolerated(0.11) benign(0.061) TCGA-GL-7773-01 1 109807126 109807126 C A CELSR2 Missense_Mutation p.S1780R 0.37 tolerated(0.13) benign(0.005) TCGA-GL-7773-01 1 111862962 111862962 C T CHIA Silent p.N435N 0.39 TCGA-GL-7773-01 1 114308975 114308975 G C RSBN1 Missense_Mutation p.P679R 0.40 deleterious(0) probably_damaging(0.999) TCGA-GL-7773-01 1 152276023 152276023 C G FLG Missense_Mutation p.R3780T 0.35 unknown(0) TCGA-GL-7773-01 1 164781319 164781320 - GTATA PBX1 Frame_Shift_Ins p.T312* 0.33 TCGA-GL-7773-01 1 171527271 171527271 T C PRRC2C Missense_Mutation p.I2005T 0.38 probably_damaging(0.922) TCGA-GL-7773-01 1 174987712 174987712 T C MRPS14 Missense_Mutation p.M16V 0.40 tolerated(1) benign(0) TCGA-GL-7773-01 1 175355248 175355248 G C TNR Missense_Mutation p.P566R 0.31 deleterious(0) probably_damaging(1) TCGA-GL-7773-01 1 182856426 182856426 G C DHX9 Missense_Mutation p.G1224R 0.42 tolerated(0.19) unknown(0) TCGA-GL-7773-01 1 192128419 192128419 C T RGS18 Silent p.S63S 0.24 TCGA-GL-7773-01 1 19464498 19464498 G A UBR4 Intron 0.38 TCGA-GL-7773-01 1 224804814 224804814 T A CNIH3 5'UTR 0.36 TCGA-GL-7773-01 1 232649814 232649814 A T SIPA1L2 Silent p.I424I 0.39 TCGA-GL-7773-01 1 236702385 236702385 T A LGALS8 Missense_Mutation p.F114Y 0.33 tolerated(0.08) possibly_damaging(0.462) TCGA-GL-7773-01 1 24080614 24080614 A C TCEB3 Missense_Mutation p.E547A 0.37 deleterious(0.02) possibly_damaging(0.848) TCGA-GL-7773-01 1 31479871 31479871 G C PUM1 Missense_Mutation p.Q171E 0.34 tolerated(1) benign(0.001) TCGA-GL-7773-01 1 3511980 3511980 A G MEGF6 Missense_Mutation p.Y100H 0.35 deleterious(0.04) benign(0.216) TCGA-GL-7773-01 1 43828621 43828621 G A CDC20 Splice_Site p.X441_splice 0.41 TCGA-GL-7773-01 1 47717027 47717027 T - STIL Frame_Shift_Del p.A1217Lfs*3 0.29 TCGA-GL-7773-01 1 52881045 52881046 - AGT PRPF38A Nonsense_Mutation p.K295_S296ins* 0.46 TCGA-GL-7773-01 20 50407897 50407897 G C SALL4 Missense_Mutation p.D375E 0.35 tolerated(0.25) benign(0.397) TCGA-GL-7773-01 22 38328888 38328888 A G MICALL1 Missense_Mutation p.I743V 0.42 tolerated(0.44) probably_damaging(0.991) TCGA-GL-7773-01 22 50688998 50688998 G A HDAC10 Intron 0.41 TCGA-GL-7773-01 2 179599140 179599140 A G TTN Silent p.F5137F 0.34 TCGA-GL-7773-01 2 182543429 182543429 C A NEUROD1 Silent p.L53L 0.38 TCGA-GL-7773-01 2 197889959 197889959 T C AC017035.2 3'Flank 0.37 TCGA-GL-7773-01 2 203848266 203848266 A G CARF Silent p.Q699Q 0.35 TCGA-GL-7773-01 2 33768640 33768640 G C RASGRP3 Missense_Mutation p.S447T 0.47 tolerated(0.28) possibly_damaging(0.658) TCGA-GL-7773-01 2 37129786 37129786 T G STRN Missense_Mutation p.K200N 0.41 tolerated(0.27) benign(0.007) TCGA-GL-7773-01 2 37873747 37873747 G A CDC42EP3 5'UTR 0.30 TCGA-GL-7773-01 2 96592980 96592980 C T ANKRD36C 3'Flank 0.31 TCGA-GL-7773-01 2 97428005 97428005 C A CNNM4 Nonsense_Mutation p.Y423* 0.36 TCGA-GL-7773-01 3 114057877 114057878 AT - ZBTB20 Frame_Shift_Del p.M734Efs*6 0.34 TCGA-GL-7773-01 3 146167110 146167110 C T PLSCR2 Silent p.K249K 0.40 TCGA-GL-7773-01 3 182789038 182789038 T C MCCC1 Missense_Mutation p.Y200C 0.23 deleterious(0) probably_damaging(0.988) TCGA-GL-7773-01 3 38316610 38316610 C A SLC22A13 Silent p.T256T 0.35 TCGA-GL-7773-01 3 407694 407695 - T CHL1 Frame_Shift_Ins p.L550Ffs*4 0.26 TCGA-GL-7773-01 3 48266893 48266893 T C CAMP Silent p.L167L 0.36 TCGA-GL-7773-01 3 51897303 51897303 T C IQCF2 Missense_Mutation p.C138R 0.07 deleterious(0) probably_damaging(0.955) TCGA-GL-7773-01 3 54952818 54952823 CAGGAA - LRTM1 In_Frame_Del p.L234_A236delinsP 0.39 TCGA-GL-7773-01 3 56779418 56779418 T G ARHGEF3 Missense_Mutation p.K261Q 0.34 deleterious(0.02) possibly_damaging(0.857) TCGA-GL-7773-01 3 62317065 62317065 T A C3orf14 Silent p.V81V 0.39 TCGA-GL-7773-01 3 98309567 98309567 A T CPOX Silent p.A240A 0.25 TCGA-GL-7773-01 4 123202841 123202841 G C KIAA1109 Missense_Mutation p.M2983I 0.35 benign(0.008) TCGA-GL-7773-01 4 76529105 76529105 T A CDKL2 Nonsense_Mutation p.K231* 0.40 TCGA-GL-7773-01 5 121799288 121799288 C G SNCAIP 3'UTR 0.73 TCGA-GL-7773-01 5 140741729 140741729 G A PCDHGB2 Missense_Mutation p.S676N 0.64 tolerated(0.18) benign(0.022) TCGA-GL-7773-01 5 176829362 176829363 GC - F12 Frame_Shift_Del p.R593Qfs*38 0.33 TCGA-GL-7773-01 5 180030377 180030377 C T FLT4 Missense_Mutation p.G1303S 0.37 tolerated(0.98) benign(0.002) TCGA-GL-7773-01 5 31515239 31515239 C G DROSHA Missense_Mutation p.K382N 0.36 deleterious(0.01) possibly_damaging(0.477) TCGA-GL-7773-01 5 7878202 7878202 G T MTRR Nonsense_Mutation p.E210* 0.33 TCGA-GL-7773-01 5 98192299 98192299 G A CHD1 Missense_Mutation p.H1640Y 0.62 tolerated_low_confidence(0.88) benign(0.042) TCGA-GL-7773-01 6 105776878 105776878 T A PREP Missense_Mutation p.N347Y 0.38 deleterious(0) possibly_damaging(0.722) TCGA-GL-7773-01 6 20548882 20548882 T G CDKAL1 Missense_Mutation p.S78A 0.39 deleterious(0) probably_damaging(1) TCGA-GL-7773-01 6 33156195 33156195 C A COL11A2 Missense_Mutation p.D184Y 0.38 probably_damaging(0.999) TCGA-GL-7773-01 6 71003975 71003975 G A COL9A1 Silent p.D197D 0.35 TCGA-GL-7773-01 6 90660214 90660214 G A BACH2 Silent p.P537P 0.40 TCGA-GL-7773-01 7 151254193 151254193 A G PRKAG2 3'UTR 0.39 TCGA-GL-7773-01 7 73790824 73790824 G T CLIP2 Missense_Mutation p.G698V 0.42 tolerated(0.22) benign(0.13) TCGA-GL-7773-01 7 83631283 83631283 C A SEMA3A Missense_Mutation p.M480I 0.29 deleterious(0.03) possibly_damaging(0.716) TCGA-GL-7773-01 7 95818645 95818645 C T SLC25A13 Silent p.E298E 0.40 TCGA-GL-7773-01 8 10466983 10466983 C A RP1L1 Missense_Mutation p.R1542L 0.26 unknown(0) TCGA-GL-7773-01 8 132982859 132982859 G T EFR3A Missense_Mutation p.K376N 0.29 deleterious(0.02) benign(0.323) TCGA-GL-7773-01 8 86180770 86180770 T G CA13 Missense_Mutation p.Y195D 0.38 deleterious(0) probably_damaging(1) TCGA-GL-7773-01 8 91072373 91072373 C A CALB1 3'UTR 0.36 TCGA-GL-7773-01 9 102730748 102730748 G A STX17 Silent p.V234V 0.08 TCGA-GL-7773-01 9 133759486 133759486 G A ABL1 Silent p.L622L 0.42 TCGA-GL-7773-01 9 134019822 134019822 T A NUP214 Missense_Mutation p.F484I 0.33 possibly_damaging(0.504) TCGA-GL-7773-01 9 2810352 2810352 C G KIAA0020 Missense_Mutation p.G572A 0.24 tolerated(0.09) benign(0.158) TCGA-GL-7773-01 9 33798069 33798069 T C PRSS3 Missense_Mutation p.L205P 0.30 deleterious(0.03) possibly_damaging(0.887) TCGA-GL-7773-01 9 92007357 92007357 A T SEMA4D Nonsense_Mutation p.Y201* 0.29 TCGA-GL-7773-01 X 100808732 100808733 - T ARMCX1 Frame_Shift_Ins p.L274Ffs*12 0.27 TCGA-GL-7773-01 X 114883786 114883786 G C PLS3 Missense_Mutation p.V600L 0.39 deleterious(0.01) benign(0.291) TCGA-GL-7773-01 X 117526750 117526750 T G WDR44 Missense_Mutation p.D114E 0.41 tolerated_low_confidence(0.84) benign(0.001) TCGA-GL-7773-01 X 122801090 122801090 A G THOC2 Silent p.L353L 0.39 TCGA-GL-7773-01 X 152826336 152826336 C T ATP2B3 Silent p.F1014F 0.46 TCGA-GL-7773-01 X 46401551 46401551 T A ZNF674 Intron 0.34 TCGA-GL-7966-01 11 125766029 125766029 T - PUS3 Frame_Shift_Del p.T51Lfs*15 0.08 TCGA-GL-7966-01 11 134241359 134241359 A G GLB1L2 Silent p.T467T 0.37 TCGA-GL-7966-01 11 66555634 66555634 T C C11orf80 Missense_Mutation p.I176T 0.07 deleterious(0.02) benign(0.188) TCGA-GL-7966-01 12 132395297 132395297 C T ULK1 Silent p.S300S 0.38 TCGA-GL-7966-01 12 30787080 30787080 T C IPO8 Missense_Mutation p.S946G 0.08 tolerated(0.07) benign(0.065) TCGA-GL-7966-01 15 25207297 25207297 C T SNURF Silent p.H17H 0.07 TCGA-GL-7966-01 15 25652285 25652285 C G UBE3A Intron 0.14 TCGA-GL-7966-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.15 TCGA-GL-7966-01 17 16340169 16340169 A G TRPV2 Missense_Mutation p.N754S 0.39 deleterious_low_confidence(0.02) benign(0.009) TCGA-GL-7966-01 17 37809843 37809854 CCTCCCTGGGCT - STARD3 In_Frame_Del p.G23_L26del 0.38 TCGA-GL-7966-01 17 40101470 40101470 T C TTC25 RNA 0.52 TCGA-GL-7966-01 17 48608775 48608775 C T MYCBPAP Missense_Mutation p.R981C 0.10 deleterious_low_confidence(0.05) benign(0.023) TCGA-GL-7966-01 17 6531560 6531560 G A KIAA0753 Nonsense_Mutation p.Q199* 0.06 TCGA-GL-7966-01 18 40853736 40853736 C G SYT4 Missense_Mutation p.D220H 0.47 deleterious(0) probably_damaging(0.992) TCGA-GL-7966-01 18 61585305 61585305 T A SERPINB10 Missense_Mutation p.I114K 0.12 deleterious(0) possibly_damaging(0.529) TCGA-GL-7966-01 19 18679377 18679377 A T KXD1 Missense_Mutation p.Q156L 0.06 tolerated_low_confidence(0.32) benign(0.013) TCGA-GL-7966-01 19 50939282 50939282 G T MYBPC2 Silent p.V70V 0.50 TCGA-GL-7966-01 1 158517503 158517503 A T OR6Y1 Silent p.I131I 0.09 TCGA-GL-7966-01 1 205274389 205274389 T C NUAK2 Missense_Mutation p.D254G 0.24 deleterious(0) probably_damaging(1) TCGA-GL-7966-01 1 216138718 216138718 C T USH2A Missense_Mutation p.R2354H 0.32 benign(0.001) TCGA-GL-7966-01 1 226180666 226180666 A C SDE2 Missense_Mutation p.I92M 0.36 deleterious(0) probably_damaging(1) TCGA-GL-7966-01 1 241663812 241663812 G A FH Nonsense_Mutation p.Q439* 0.43 TCGA-GL-7966-01 1 48864973 48864973 G T SPATA6 Intron 0.68 TCGA-GL-7966-01 1 93160869 93160869 C G EVI5 Missense_Mutation p.E347Q 0.10 deleterious(0.01) benign(0.261) TCGA-GL-7966-01 20 61490803 61490806 AGAA - TCFL5 Frame_Shift_Del p.F302Vfs*13 0.43 TCGA-GL-7966-01 21 47615617 47615617 G A LSS Missense_Mutation p.A597V 0.74 tolerated(0.08) possibly_damaging(0.854) TCGA-GL-7966-01 22 30061052 30061052 T - NF2 Frame_Shift_Del p.L295Rfs*14 0.39 TCGA-GL-7966-01 22 37098492 37098492 T - CACNG2 Frame_Shift_Del p.S44Vfs*15 0.43 TCGA-GL-7966-01 2 10059757 10059763 GCACACT - TAF1B Frame_Shift_Del p.S458Rfs*39 0.19 TCGA-GL-7966-01 2 166201262 166201262 C G SCN2A Silent p.L920L 0.15 TCGA-GL-7966-01 2 168105759 168105759 G A XIRP2 Silent p.R2619R 0.26 TCGA-GL-7966-01 2 179598482 179598482 C A TTN Nonsense_Mutation p.G5212* 0.06 TCGA-GL-7966-01 2 179986590 179986590 G A SESTD1 Missense_Mutation p.S450F 0.30 deleterious(0.03) benign(0.058) TCGA-GL-7966-01 2 220074990 220074990 G A ABCB6 Silent p.I794I 0.06 TCGA-GL-7966-01 2 88890366 88890366 C T EIF2AK3 Silent p.K324K 0.06 TCGA-GL-7966-01 3 32766999 32766999 G A CNOT10 Missense_Mutation p.S367N 0.05 tolerated(0.11) benign(0.066) TCGA-GL-7966-01 5 132161119 132161119 C T SHROOM1 Silent p.P238P 0.70 TCGA-GL-7966-01 5 1632962 1632962 T A RP11-43F13.1 Intron 0.11 TCGA-GL-7966-01 5 9629374 9629374 G A TAS2R1 Silent p.F257F 0.06 TCGA-GL-7966-01 7 142561393 142561393 A T EPHB6 Silent p.V35V 0.45 TCGA-GL-8500-01 10 123687474 123687474 C T ATE1 5'UTR 0.57 TCGA-GL-8500-01 10 124740205 124740205 A G PSTK Silent p.R70R 0.44 TCGA-GL-8500-01 10 22022934 22022934 A T MLLT10 Missense_Mutation p.I912F 0.44 deleterious(0) benign(0.282) TCGA-GL-8500-01 10 81927005 81927005 A C ANXA11 Missense_Mutation p.L209R 0.49 deleterious(0.01) possibly_damaging(0.827) TCGA-GL-8500-01 11 107677532 107677532 A C SLC35F2 Missense_Mutation p.V162G 0.36 deleterious(0.01) benign(0.158) TCGA-GL-8500-01 11 117058116 117058118 TTC - SIDT2 In_Frame_Del p.S347del 0.44 TCGA-GL-8500-01 11 57256737 57256737 T C SLC43A1 Missense_Mutation p.N441S 0.39 tolerated(0.23) benign(0.122) TCGA-GL-8500-01 11 61912744 61912744 G A INCENP Missense_Mutation p.D607N 0.45 deleterious(0) unknown(0) TCGA-GL-8500-01 11 85956385 85956385 T A EED Missense_Mutation p.N38K 0.49 tolerated(0.84) benign(0.074) TCGA-GL-8500-01 12 26809443 26809443 C G ITPR2 Missense_Mutation p.R744P 0.33 deleterious(0) probably_damaging(0.993) TCGA-GL-8500-01 12 308019 308019 A T SLC6A12 Missense_Mutation p.Y264N 0.54 tolerated(0.3) benign(0.424) TCGA-GL-8500-01 12 401948 401948 A G KDM5A Missense_Mutation p.C1615R 0.32 deleterious(0) probably_damaging(0.982) TCGA-GL-8500-01 12 4461705 4461705 C G C12orf5 Missense_Mutation p.L221V 0.41 tolerated(0.29) benign(0.005) TCGA-GL-8500-01 12 49224245 49224245 T - DDX23 3'UTR 0.33 TCGA-GL-8500-01 12 51092173 51092173 A G DIP2B Missense_Mutation p.Y704C 0.37 deleterious(0.02) benign(0.274) TCGA-GL-8500-01 12 53680427 53680427 C A ESPL1 Missense_Mutation p.P1303T 0.51 tolerated(0.14) benign(0.003) TCGA-GL-8500-01 12 56115258 56115258 A G RDH5 Missense_Mutation p.E97G 0.38 deleterious(0.01) benign(0.008) TCGA-GL-8500-01 12 57828547 57828547 G T INHBC 5'UTR 0.57 TCGA-GL-8500-01 12 6933600 6933600 T C GPR162 Missense_Mutation p.F179S 0.39 deleterious(0) probably_damaging(0.992) TCGA-GL-8500-01 12 75785104 75785104 C A GLIPR1L2 Missense_Mutation p.P70T 0.51 deleterious(0) probably_damaging(1) TCGA-GL-8500-01 13 113915023 113915023 C G CUL4A Missense_Mutation p.H712D 0.41 deleterious(0) probably_damaging(0.991) TCGA-GL-8500-01 13 113963979 113963979 T C LAMP1 Missense_Mutation p.S69P 0.38 tolerated(0.38) benign(0.005) TCGA-GL-8500-01 14 50292672 50292672 G A NEMF Missense_Mutation p.A497V 0.76 deleterious(0) benign(0.314) TCGA-GL-8500-01 14 55655750 55655751 - AT DLGAP5 Frame_Shift_Ins p.V50Mfs*2 0.37 TCGA-GL-8500-01 15 40661086 40661086 A - DISP2 Frame_Shift_Del p.N925Mfs*27 0.29 TCGA-GL-8500-01 15 52606371 52606371 T C MYO5A Silent p.P1788P 0.36 TCGA-GL-8500-01 16 23848699 23848699 C T PRKCB Silent p.G59G 0.59 TCGA-GL-8500-01 16 2812806 2812806 C G SRRM2 Missense_Mutation p.S759R 0.59 benign(0.184) TCGA-GL-8500-01 16 29690484 29690484 A G QPRT 5'UTR 0.27 TCGA-GL-8500-01 16 30408740 30408740 G C ZNF48 Missense_Mutation p.A57P 0.22 tolerated(0.27) benign(0.003) TCGA-GL-8500-01 16 56687059 56687059 T C MT1B 3'UTR 0.32 TCGA-GL-8500-01 16 732539 732539 G C JMJD8 3'UTR 0.56 TCGA-GL-8500-01 16 88653085 88653085 C T ZC3H18 Silent p.F227F 0.25 TCGA-GL-8500-01 17 18181411 18181411 G A TOP3A Missense_Mutation p.P802L 0.36 deleterious(0.04) benign(0.027) TCGA-GL-8500-01 17 7530935 7530935 G A SAT2 Nonsense_Mutation p.R7* 0.31 TCGA-GL-8500-01 18 48331527 48331527 A G MRO Silent p.D156D 0.32 TCGA-GL-8500-01 19 13346025 13346025 G A CACNA1A Nonsense_Mutation p.Q1711* 0.33 TCGA-GL-8500-01 19 14071818 14071818 G T DCAF15 3'UTR 0.41 TCGA-GL-8500-01 19 2290213 2290213 C T LINGO3 Silent p.P521P 0.38 TCGA-GL-8500-01 19 37147417 37147417 G C ZNF461 Missense_Mutation p.I55M 0.42 deleterious(0) benign(0.365) TCGA-GL-8500-01 19 39058443 39058443 C T RYR1 Silent p.P4515P 0.27 TCGA-GL-8500-01 19 45868315 45868315 G A ERCC2 Silent p.H154H 0.46 TCGA-GL-8500-01 19 49464330 49464330 T C BAX Silent p.Y211Y 0.46 TCGA-GL-8500-01 19 53432286 53432286 A G ZNF321P Missense_Mutation p.L191S 0.45 tolerated(1) benign(0.004) TCGA-GL-8500-01 19 56244868 56244868 A T NLRP9 Missense_Mutation p.I110K 0.45 deleterious(0) possibly_damaging(0.723) TCGA-GL-8500-01 19 59073766 59073766 G T MZF1 Missense_Mutation p.H626Q 0.67 tolerated(0.37) benign(0.255) TCGA-GL-8500-01 19 7075688 7075688 C G ZNF557 Silent p.A18A 0.46 TCGA-GL-8500-01 1 149754357 149754357 A G HIST2H2BF 3'UTR 0.78 TCGA-GL-8500-01 1 211749303 211749308 ATCTAA - SLC30A1 In_Frame_Del p.L316_D317del 0.76 TCGA-GL-8500-01 1 218480910 218480910 T G RRP15 Missense_Mutation p.L214W 0.84 deleterious(0) probably_damaging(0.999) TCGA-GL-8500-01 1 230385000 230385000 C A GALNT2 Missense_Mutation p.N296K 0.59 deleterious(0.03) benign(0.398) TCGA-GL-8500-01 1 241094065 241094065 G C RGS7 Missense_Mutation p.P113A 0.84 deleterious(0.01) probably_damaging(0.991) TCGA-GL-8500-01 1 44423086 44423086 C A IPO13 Missense_Mutation p.L469I 0.78 tolerated(0.23) benign(0.017) TCGA-GL-8500-01 20 25434063 25434064 - G NINL 3'UTR 0.27 TCGA-GL-8500-01 20 2776796 2776796 C G CPXM1 Silent p.L418L 0.37 TCGA-GL-8500-01 20 34257408 34257408 T C NFS1 3'UTR 0.50 TCGA-GL-8500-01 21 33371363 33371363 A C HUNK Missense_Mutation p.M671L 0.32 deleterious_low_confidence(0.02) benign(0.209) TCGA-GL-8500-01 21 38568034 38568035 - T TTC3 Frame_Shift_Ins p.A1760Cfs*16 0.29 TCGA-GL-8500-01 22 18293513 18293513 T C MICAL3 Missense_Mutation p.R1838G 0.34 benign(0.24) TCGA-GL-8500-01 22 30413918 30413918 G T MTMR3 Silent p.V559V 0.32 TCGA-GL-8500-01 22 38355418 38355418 C G POLR2F Missense_Mutation p.I52M 0.42 tolerated(0.07) benign(0.268) TCGA-GL-8500-01 22 38875733 38875733 A G KDELR3 Missense_Mutation p.N110D 0.44 deleterious(0.03) possibly_damaging(0.726) TCGA-GL-8500-01 2 175624262 175624262 A T CHRNA1 Missense_Mutation p.V48D 0.33 tolerated(0.36) benign(0.088) TCGA-GL-8500-01 2 190428363 190428363 A T SLC40A1 Missense_Mutation p.V450E 0.43 tolerated(0.31) benign(0.002) TCGA-GL-8500-01 2 197187250 197187250 C T HECW2 Missense_Mutation p.G279E 0.40 deleterious(0.01) probably_damaging(1) TCGA-GL-8500-01 2 220075814 220075814 A G ABCB6 Missense_Mutation p.L662P 0.38 deleterious(0) probably_damaging(0.996) TCGA-GL-8500-01 2 233599882 233599882 A T GIGYF2 5'UTR 0.44 TCGA-GL-8500-01 2 241826420 241826420 C T C2orf54 3'UTR 0.32 TCGA-GL-8500-01 2 27603308 27603308 T A ZNF513 Intron 0.56 TCGA-GL-8500-01 2 42284881 42284881 C T PKDCC 3'UTR 0.18 TCGA-GL-8500-01 2 54176408 54176408 A G PSME4 Silent p.L85L 0.28 TCGA-GL-8500-01 2 86790455 86790455 T - CHMP3 Intron 0.33 TCGA-GL-8500-01 3 10342967 10342967 T C SEC13 Missense_Mutation p.E316G 0.40 tolerated_low_confidence(0.32) benign(0.006) TCGA-GL-8500-01 3 111700691 111700691 A G ABHD10 Missense_Mutation p.Y68C 0.43 deleterious(0) probably_damaging(0.977) TCGA-GL-8500-01 3 126062544 126062545 - G KLF15 3'UTR 0.32 TCGA-GL-8500-01 3 127981023 127981023 G C EEFSEC Missense_Mutation p.A193P 0.43 deleterious(0.02) probably_damaging(0.954) TCGA-GL-8500-01 3 178785387 178785387 C A ZMAT3 Nonsense_Mutation p.E52* 0.36 TCGA-GL-8500-01 3 37042512 37042512 G A MLH1 Missense_Mutation p.A92T 0.52 tolerated(0.61) benign(0.001) TCGA-GL-8500-01 3 38404484 38404484 C G XYLB Silent p.V89V 0.42 TCGA-GL-8500-01 3 50257565 50257565 A G SLC38A3 RNA 0.77 TCGA-GL-8500-01 3 93782065 93782065 G C DHFRL1 5'UTR 0.42 TCGA-GL-8500-01 4 123229112 123229112 T - KIAA1109 Frame_Shift_Del p.W3285Gfs*2 0.31 TCGA-GL-8500-01 5 115822558 115822558 G A SEMA6A Silent p.C283C 0.42 TCGA-GL-8500-01 5 1324927 1324927 A T CLPTM1L Missense_Mutation p.F383Y 0.45 tolerated(0.12) benign(0.033) TCGA-GL-8500-01 5 135178132 135178132 C A SLC25A48 Missense_Mutation p.P25H 0.34 deleterious(0) probably_damaging(1) TCGA-GL-8500-01 5 135207543 135207543 G T SLC25A48 Intron 0.49 TCGA-GL-8500-01 5 137904733 137904733 T - HSPA9 Frame_Shift_Del p.N139Mfs*33 0.31 TCGA-GL-8500-01 5 170323085 170323085 T A RANBP17 Missense_Mutation p.I152K 0.41 tolerated(0.43) benign(0.016) TCGA-GL-8500-01 5 180661859 180661859 G A TRIM41 3'UTR 0.40 TCGA-GL-8500-01 5 52397195 52397196 - T MOCS2 Frame_Shift_Ins p.R124Kfs*26 0.30 TCGA-GL-8500-01 5 73205322 73205322 T A ARHGEF28 Missense_Mutation p.I1416N 0.47 tolerated(0.08) benign(0.016) TCGA-GL-8500-01 6 25773825 25773825 G A SLC17A4 Missense_Mutation p.E304K 0.38 deleterious(0.04) benign(0.243) TCGA-GL-8500-01 6 30955264 30955264 T A MUC21 Missense_Mutation p.S438T 0.42 tolerated(0.99) unknown(0) TCGA-GL-8500-01 6 52141973 52141973 G C MCM3 Missense_Mutation p.Q398E 0.29 deleterious(0) probably_damaging(0.999) TCGA-GL-8500-01 6 70866589 70866589 G - COL19A1 Frame_Shift_Del p.I757Yfs*28 0.21 TCGA-GL-8500-01 7 138597164 138597164 A C KIAA1549 Missense_Mutation p.I974S 0.59 deleterious(0) possibly_damaging(0.776) TCGA-GL-8500-01 7 149576654 149576654 C G ATP6V0E2 Missense_Mutation p.P177R 0.72 deleterious_low_confidence(0.05) possibly_damaging(0.884) TCGA-GL-8500-01 7 19184646 19184646 T - FERD3L Frame_Shift_Del p.M114Cfs*40 0.27 TCGA-GL-8500-01 7 84636164 84636164 G - SEMA3D Frame_Shift_Del p.T621Ifs*17 0.41 TCGA-GL-8500-01 8 11637150 11637150 A - NEIL2 Frame_Shift_Del p.M62Wfs*82 0.33 TCGA-GL-8500-01 8 121457337 121457337 T C MRPL13 5'UTR 0.45 TCGA-GL-8500-01 8 56922610 56922610 C A LYN Missense_Mutation p.Q494K 0.37 tolerated(0.17) probably_damaging(0.996) TCGA-GL-8500-01 8 95262646 95262646 G A GEM Silent p.S261S 0.34 TCGA-GL-8500-01 8 95419720 95419720 T - RAD54B Frame_Shift_Del p.N243Ifs*44 0.35 TCGA-GL-8500-01 9 110091836 110091836 G A RAD23B Missense_Mutation p.G377R 0.32 deleterious(0) probably_damaging(0.994) TCGA-GL-8500-01 9 125751642 125751642 C T RABGAP1 Silent p.V219V 0.48 TCGA-GL-8500-01 9 35869823 35869823 C T OR13J1 Silent p.T192T 0.32 TCGA-GL-8500-01 9 86590568 86590568 C T HNRNPK Intron 0.21 TCGA-GL-8500-01 9 91965762 91965762 C T SECISBP2 Missense_Mutation p.S703L 0.48 deleterious(0) probably_damaging(0.99) TCGA-GL-A4EM-01 10 32573863 32573863 T A EPC1 Missense_Mutation p.T503S 0.19 tolerated(0.13) benign(0.064) TCGA-GL-A4EM-01 10 54527970 54527970 A G MBL2 Missense_Mutation p.L225P 0.17 deleterious(0) probably_damaging(0.994) TCGA-GL-A4EM-01 11 60609627 60609627 G T CCDC86 Silent p.R10R 0.21 TCGA-GL-A4EM-01 11 65487867 65487867 C - RNASEH2C Frame_Shift_Del p.G65Afs*19 0.26 TCGA-GL-A4EM-01 11 93911576 93911576 C G PANX1 Nonsense_Mutation p.Y121* 0.23 TCGA-GL-A4EM-01 12 113333603 113333603 C A RPH3A Missense_Mutation p.H627N 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-GL-A4EM-01 12 113624499 113624499 A G RITA1 5'UTR 0.17 TCGA-GL-A4EM-01 12 52188171 52188171 T A SCN8A Missense_Mutation p.I1514N 0.35 deleterious(0.02) benign(0.017) TCGA-GL-A4EM-01 12 52779218 52779218 C G KRT84 Missense_Mutation p.G51A 0.20 deleterious(0.04) probably_damaging(0.992) TCGA-GL-A4EM-01 12 7125633 7125633 C T LPCAT3 Silent p.A32A 0.30 TCGA-GL-A4EM-01 12 88442035 88442035 T A C12orf29 Missense_Mutation p.C272S 0.25 tolerated(0.73) benign(0.001) TCGA-GL-A4EM-01 13 39262352 39262352 G C FREM2 Missense_Mutation p.A291P 0.20 deleterious(0.01) benign(0.126) TCGA-GL-A4EM-01 14 102689211 102689211 T A WDR20 Silent p.T518T 0.18 TCGA-GL-A4EM-01 14 65418357 65418362 GTATCT - RAB15 In_Frame_Del p.R69_Y70del 0.14 TCGA-GL-A4EM-01 14 68038953 68038953 C A PLEKHH1 Missense_Mutation p.R563S 0.24 deleterious(0.02) benign(0.057) TCGA-GL-A4EM-01 14 89105224 89105224 T G EML5 Missense_Mutation p.N1422T 0.17 tolerated(1) benign(0.001) TCGA-GL-A4EM-01 15 40751142 40751142 C A BAHD1 Missense_Mutation p.A160D 0.23 deleterious(0) benign(0.125) TCGA-GL-A4EM-01 15 43378432 43378432 C T UBR1 Missense_Mutation p.D30N 0.21 tolerated(0.47) benign(0.118) TCGA-GL-A4EM-01 15 48431306 48431306 T - SLC24A5 Frame_Shift_Del p.F339Sfs*20 0.10 TCGA-GL-A4EM-01 15 68118587 68118587 G A SKOR1 Missense_Mutation p.A327T 0.12 deleterious_low_confidence(0.03) benign(0.316) TCGA-GL-A4EM-01 15 72189792 72189792 T G MYO9A Intron 0.26 TCGA-GL-A4EM-01 15 73735652 73735652 G T C15orf60 Silent p.L42L 0.13 TCGA-GL-A4EM-01 15 89872222 89872222 G - POLG Frame_Shift_Del p.T326Qfs*39 0.13 TCGA-GL-A4EM-01 16 21245180 21245180 A - ANKS4B Frame_Shift_Del p.Y41Sfs*8 0.26 TCGA-GL-A4EM-01 16 3064476 3064476 C A CLDN9 3'UTR 0.28 TCGA-GL-A4EM-01 16 69368509 69368509 A T RP11-343C2.12 Missense_Mutation p.L89Q 0.17 deleterious(0) possibly_damaging(0.901) TCGA-GL-A4EM-01 16 88497561 88497561 C T ZNF469 Missense_Mutation p.P1200L 0.29 benign(0.078) TCGA-GL-A4EM-01 17 30219812 30219812 T C UTP6 Missense_Mutation p.D105G 0.12 tolerated(0.22) benign(0.011) TCGA-GL-A4EM-01 17 37561521 37561521 G A MED1 3'Flank 0.34 TCGA-GL-A4EM-01 17 4937403 4937403 G T SLC52A1 Silent p.T127T 0.28 TCGA-GL-A4EM-01 17 57760151 57760152 AG - CLTC Frame_Shift_Del p.E1255Gfs*27 0.20 TCGA-GL-A4EM-01 17 73273550 73273550 G C SLC25A19 Missense_Mutation p.L220V 0.27 tolerated(0.07) possibly_damaging(0.706) TCGA-GL-A4EM-01 17 7350850 7350850 A T CHRNB1 Missense_Mutation p.N164I 0.13 deleterious(0) probably_damaging(0.991) TCGA-GL-A4EM-01 17 7386013 7386013 G C SLC35G6 Missense_Mutation p.G237A 0.13 tolerated(0.83) benign(0.058) TCGA-GL-A4EM-01 17 78321624 78321624 C - RNF213 Frame_Shift_Del p.L3165Sfs*70 0.23 TCGA-GL-A4EM-01 19 14028999 14028999 G T CC2D1A Missense_Mutation p.V289L 0.19 tolerated(0.13) benign(0.081) TCGA-GL-A4EM-01 19 35505160 35505160 C G GRAMD1A Missense_Mutation p.P313R 0.13 tolerated(0.39) benign(0.415) TCGA-GL-A4EM-01 19 41350548 41350548 G T CYP2A6 Missense_Mutation p.P431T 0.13 probably_damaging(0.981) TCGA-GL-A4EM-01 19 44792844 44792844 T C ZNF235 Silent p.V248V 0.24 TCGA-GL-A4EM-01 19 58213806 58213806 T C ZNF154 Missense_Mutation p.S171G 0.14 tolerated(0.19) benign(0.006) TCGA-GL-A4EM-01 19 984341 984341 T A WDR18 5'UTR 0.28 TCGA-GL-A4EM-01 1 11270889 11270889 G A MTOR Silent p.L1212L 0.11 TCGA-GL-A4EM-01 1 150551617 150551617 C T MCL1 Silent p.E130E 0.17 TCGA-GL-A4EM-01 1 151372469 151372469 G A PSMB4 Silent p.V51V 0.09 TCGA-GL-A4EM-01 1 156169658 156169658 T C SLC25A44 Missense_Mutation p.I7T 0.13 deleterious(0) probably_damaging(0.948) TCGA-GL-A4EM-01 1 158724869 158724869 T - OR6K6 Frame_Shift_Del p.F89Sfs*25 0.10 TCGA-GL-A4EM-01 1 186024754 186024754 T A HMCN1 Silent p.V2364V 0.16 TCGA-GL-A4EM-01 1 204379087 204379089 CTA - PPP1R15B In_Frame_Del p.V484del 0.17 TCGA-GL-A4EM-01 1 215820886 215820886 G T USH2A Silent p.I4923I 0.17 TCGA-GL-A4EM-01 1 228462497 228462497 G C OBSCN Missense_Mutation p.V2345L 0.17 benign(0.2) TCGA-GL-A4EM-01 1 28086166 28086166 T C FAM76A Intron 0.17 TCGA-GL-A4EM-01 1 38288352 38288352 G T MTF1 Nonsense_Mutation p.S403* 0.17 TCGA-GL-A4EM-01 1 41107442 41107442 C T RIMS3 Silent p.K52K 0.20 TCGA-GL-A4EM-01 1 54417869 54417876 AAGAGAAG - LRRC42 Frame_Shift_Del p.K66Nfs*2 0.15 TCGA-GL-A4EM-01 20 2639397 2639397 C T IDH3B Silent p.%3D 0.09 TCGA-GL-A4EM-01 20 2639398 2639398 T A IDH3B Nonstop_Mutation p.*386Lext*29 0.09 TCGA-GL-A4EM-01 20 2639399 2639399 A C IDH3B Nonstop_Mutation p.*386Eext*29 0.08 TCGA-GL-A4EM-01 20 35443624 35443624 C T SOGA1 Missense_Mutation p.E741K 0.19 deleterious(0.01) possibly_damaging(0.889) TCGA-GL-A4EM-01 20 44486494 44486501 TGAGGACT - ZSWIM3 Frame_Shift_Del p.E11Qfs*77 0.10 TCGA-GL-A4EM-01 22 24105476 24105476 C G C22orf15 5'UTR 0.17 TCGA-GL-A4EM-01 2 114340537 114340537 A G MIR1302-3 RNA 0.06 TCGA-GL-A4EM-01 2 145157390 145157390 C T ZEB2 Missense_Mutation p.S455N 0.13 tolerated(1) benign(0.016) TCGA-GL-A4EM-01 2 210841021 210841021 G - UNC80 Frame_Shift_Del p.Q2856Hfs*47 0.07 TCGA-GL-A4EM-01 2 213872808 213872808 C A IKZF2 Missense_Mutation p.G286V 0.17 deleterious(0) probably_damaging(0.99) TCGA-GL-A4EM-01 2 239162231 239162231 G A PER2 Silent p.T811T 0.20 TCGA-GL-A4EM-01 2 42281437 42281445 AATGCCTAC - PKDCC In_Frame_Del p.N342_Y344del 0.10 TCGA-GL-A4EM-01 2 48025884 48025885 - G MSH6 Frame_Shift_Ins p.E255Gfs*3 0.12 TCGA-GL-A4EM-01 3 142279142 142279142 G T ATR Missense_Mutation p.L502M 0.13 tolerated_low_confidence(0.06) probably_damaging(0.976) TCGA-GL-A4EM-01 3 148924070 148924070 T G CP Missense_Mutation p.N365H 0.08 tolerated(0.18) benign(0.001) TCGA-GL-A4EM-01 3 183732125 183732125 C G ABCC5 Missense_Mutation p.S19T 0.21 tolerated_low_confidence(0.12) benign(0.01) TCGA-GL-A4EM-01 3 52429465 52429465 T A DNAH1 Missense_Mutation p.S3704T 0.18 probably_damaging(0.998) TCGA-GL-A4EM-01 3 66436541 66436541 C G LRIG1 Missense_Mutation p.Q551H 0.14 tolerated(0.08) benign(0.044) TCGA-GL-A4EM-01 3 89478285 89478285 A C EPHA3 Missense_Mutation p.M702L 0.16 deleterious(0.01) probably_damaging(0.958) TCGA-GL-A4EM-01 4 83769958 83769958 T G SEC31A Missense_Mutation p.H834P 0.16 tolerated(0.34) benign(0.397) TCGA-GL-A4EM-01 4 94690404 94690404 C T GRID2 Missense_Mutation p.H802Y 0.14 deleterious(0.01) benign(0.001) TCGA-GL-A4EM-01 5 132342536 132342536 T G ZCCHC10 Silent p.R40R 0.10 TCGA-GL-A4EM-01 5 176943931 176943931 G T DDX41 Missense_Mutation p.P6T 0.24 tolerated(0.07) benign(0) TCGA-GL-A4EM-01 5 92929575 92929575 T A NR2F1 3'UTR 0.28 TCGA-GL-A4EM-01 6 122777747 122777747 A G SERINC1 Silent p.L84L 0.16 TCGA-GL-A4EM-01 6 75860944 75860944 G T COL12A1 Missense_Mutation p.H1354N 0.19 possibly_damaging(0.896) TCGA-GL-A4EM-01 6 76602272 76602272 G C MYO6 Missense_Mutation p.R991P 0.17 tolerated(0.13) possibly_damaging(0.897) TCGA-GL-A4EM-01 6 97629854 97629854 A T MMS22L Silent p.I770I 0.13 TCGA-GL-A4EM-01 7 21469335 21469335 T C SP4 Silent p.T184T 0.19 TCGA-GL-A4EM-01 7 45010552 45010552 G T MYO1G Missense_Mutation p.P318H 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-GL-A4EM-01 8 66534565 66534565 G C ARMC1 Missense_Mutation p.R70G 0.18 tolerated(0.4) benign(0.001) TCGA-GL-A4EM-01 9 140158762 140158762 G A NELFB Silent p.L283L 0.23 TCGA-GL-A4EM-01 9 75355127 75355127 T C TMC1 Splice_Site p.X151_splice 0.24 TCGA-GL-A4EM-01 X 123190070 123190070 A - STAG2 Frame_Shift_Del p.E430Dfs*18 0.33 TCGA-GL-A4EM-01 X 128678970 128678970 T G OCRL Missense_Mutation p.V52G 0.36 tolerated(0.45) benign(0.024) TCGA-GL-A4EM-01 X 70316474 70316474 C T FOXO4 Silent p.T32T 0.23 TCGA-GL-A59R-01 10 115947630 115947635 AATTTG - TDRD1 In_Frame_Del p.N14_L15del 0.29 TCGA-GL-A59R-01 10 12162862 12162863 - T DHTKD1 Frame_Shift_Ins p.I913Yfs*34 0.25 TCGA-GL-A59R-01 10 46959941 46959941 C T SYT15 3'Flank 0.20 TCGA-GL-A59R-01 10 64968540 64968540 A G JMJD1C Silent p.F963F 0.37 TCGA-GL-A59R-01 10 74810906 74810906 G A P4HA1 Nonsense_Mutation p.Q269* 0.54 TCGA-GL-A59R-01 10 88911776 88911776 C G FAM35A Nonsense_Mutation p.S222* 0.34 TCGA-GL-A59R-01 11 108381026 108381026 T G EXPH5 Silent p.T1736T 0.38 TCGA-GL-A59R-01 11 119182661 119182661 T A MCAM Splice_Site p.X382_splice 0.48 TCGA-GL-A59R-01 11 44079985 44079985 C T ACCSL Silent p.L482L 0.47 TCGA-GL-A59R-01 11 58391968 58391968 T - CNTF Frame_Shift_Del p.Y193Ifs*11 0.26 TCGA-GL-A59R-01 11 65425828 65425840 GGAGACACGCACA - RELA Frame_Shift_Del p.V266Cfs*44 0.29 TCGA-GL-A59R-01 11 71949608 71949608 G A INPPL1 3'UTR 0.27 TCGA-GL-A59R-01 12 111926345 111926345 A G ATXN2 Silent p.V885V 0.55 TCGA-GL-A59R-01 12 120158284 120158284 T C CIT Missense_Mutation p.K1280R 0.53 tolerated(0.15) benign(0.395) TCGA-GL-A59R-01 12 12247627 12247628 CT - BCL2L14 Frame_Shift_Del p.F237Pfs*34 0.25 TCGA-GL-A59R-01 12 12274330 12274330 G C LRP6 Missense_Mutation p.H1524Q 0.24 tolerated(0.29) benign(0.391) TCGA-GL-A59R-01 12 46244883 46244883 A T ARID2 Missense_Mutation p.T993S 0.29 tolerated_low_confidence(0.08) benign(0.049) TCGA-GL-A59R-01 12 52845508 52845508 C G KRT6B Missense_Mutation p.A119P 0.15 tolerated(0.07) unknown(0) TCGA-GL-A59R-01 12 64521384 64521384 C G SRGAP1 Nonsense_Mutation p.S807* 0.61 TCGA-GL-A59R-01 12 78591182 78591182 G C NAV3 Splice_Site p.X2127_splice 0.50 TCGA-GL-A59R-01 12 7984344 7984344 A T SLC2A14 Missense_Mutation p.I66N 0.32 deleterious(0.04) possibly_damaging(0.838) TCGA-GL-A59R-01 12 93804921 93804921 T A UBE2N Missense_Mutation p.Y62F 0.21 deleterious(0) probably_damaging(0.99) TCGA-GL-A59R-01 13 42440068 42440068 C T VWA8 Missense_Mutation p.M439I 0.48 tolerated(0.33) benign(0.002) TCGA-GL-A59R-01 13 61060035 61060035 G A TDRD3 Missense_Mutation p.E224K 0.09 deleterious(0.01) probably_damaging(0.924) TCGA-GL-A59R-01 14 24030557 24030557 T C AP1G2 Silent p.P647P 0.40 TCGA-GL-A59R-01 14 61186919 61186919 T A SIX4 Missense_Mutation p.I370F 0.37 deleterious(0) benign(0.382) TCGA-GL-A59R-01 14 67647539 67647539 G A GPHN Missense_Mutation p.R732H 0.47 deleterious(0) probably_damaging(0.988) TCGA-GL-A59R-01 14 75179684 75179684 G A AC007956.1 Silent p.F39F 0.55 TCGA-GL-A59R-01 14 80677839 80677839 C - DIO2 5'UTR 0.22 TCGA-GL-A59R-01 14 89171882 89171883 - T EML5 Frame_Shift_Ins p.V626Sfs*7 0.34 TCGA-GL-A59R-01 15 34130027 34130027 A - RYR3 Frame_Shift_Del p.Q3951Kfs*30 0.36 TCGA-GL-A59R-01 16 20681301 20681301 A T ACSM1 Missense_Mutation p.L254I 0.38 deleterious(0.03) benign(0.009) TCGA-GL-A59R-01 16 21185458 21185458 G C TMEM159 Missense_Mutation p.W131C 0.47 deleterious(0.02) benign(0.128) TCGA-GL-A59R-01 16 21214557 21214557 G T ZP2 Missense_Mutation p.L330I 0.58 deleterious(0.05) possibly_damaging(0.881) TCGA-GL-A59R-01 16 30976286 30976286 C A SETD1A Missense_Mutation p.S408Y 0.33 possibly_damaging(0.831) TCGA-GL-A59R-01 16 67487539 67487539 G A ATP6V0D1 Silent p.I70I 0.44 TCGA-GL-A59R-01 16 67876718 67876718 G T THAP11 Missense_Mutation p.E87D 0.42 deleterious(0.03) unknown(0) TCGA-GL-A59R-01 17 25967635 25967635 G A LGALS9 Missense_Mutation p.D57N 0.25 tolerated(0.13) benign(0.226) TCGA-GL-A59R-01 17 61910338 61910338 C A SMARCD2 Missense_Mutation p.R519M 0.56 tolerated(0.18) possibly_damaging(0.781) TCGA-GL-A59R-01 17 66440668 66440668 C T WIPI1 Silent p.L132L 0.28 TCGA-GL-A59R-01 17 73539497 73539497 G C LLGL2 5'UTR 0.30 TCGA-GL-A59R-01 18 20562277 20562277 G A RBBP8 Silent p.R175R 0.33 TCGA-GL-A59R-01 19 1817252 1817252 G C REXO1 Missense_Mutation p.T1056S 0.36 tolerated(0.1) benign(0.002) TCGA-GL-A59R-01 19 42911843 42911843 G T LIPE Missense_Mutation p.T586K 0.45 tolerated(0.07) benign(0.178) TCGA-GL-A59R-01 19 44648726 44648726 C A ZNF234 5'UTR 0.42 TCGA-GL-A59R-01 19 49714007 49714007 G T TRPM4 Silent p.T1123T 0.33 TCGA-GL-A59R-01 19 51918318 51918318 C G SIGLEC10 Missense_Mutation p.G459R 0.25 deleterious(0.02) possibly_damaging(0.834) TCGA-GL-A59R-01 19 54669261 54669261 G T TMC4 Silent p.S285S 0.47 TCGA-GL-A59R-01 1 146747123 146747123 C A CHD1L Silent p.G459G 0.34 TCGA-GL-A59R-01 1 155313421 155313421 G A ASH1L Silent p.R2698R 0.37 TCGA-GL-A59R-01 1 155629410 155629410 G A YY1AP1 3'UTR 0.29 TCGA-GL-A59R-01 1 156107474 156107474 A C LMNA Silent p.S546S 0.38 TCGA-GL-A59R-01 1 179339155 179339155 C G AXDND1 Missense_Mutation p.R106G 0.40 deleterious(0) possibly_damaging(0.726) TCGA-GL-A59R-01 1 204948503 204948503 G A NFASC Silent p.Q664Q 0.36 TCGA-GL-A59R-01 1 204948504 204948504 T G NFASC Missense_Mutation p.F665V 0.37 deleterious(0) probably_damaging(0.968) TCGA-GL-A59R-01 1 55183223 55183223 G C TTC4 Missense_Mutation p.K96N 0.36 deleterious(0.04) benign(0.052) TCGA-GL-A59R-01 1 63868011 63868011 A - ALG6 Frame_Shift_Del p.Y85Lfs*6 0.37 TCGA-GL-A59R-01 20 47705894 47705895 - TT CSE1L Frame_Shift_Ins p.L646Ffs*22 0.18 TCGA-GL-A59R-01 20 55033659 55033659 C A CASS4 Missense_Mutation p.H739Q 0.11 tolerated(0.49) benign(0.088) TCGA-GL-A59R-01 20 61300283 61300283 G A SLCO4A1 Silent p.G626G 0.68 TCGA-GL-A59R-01 21 31933587 31933587 A - KRTAP19-7 Frame_Shift_Del p.Y8Mfs*4 0.33 TCGA-GL-A59R-01 21 35472206 35472206 A G SLC5A3 3'UTR 0.42 TCGA-GL-A59R-01 21 43547904 43547904 G T UMODL1 Missense_Mutation p.R1346L 0.42 deleterious(0) probably_damaging(0.999) TCGA-GL-A59R-01 21 46875643 46875643 C G COL18A1 Missense_Mutation p.R67G 0.45 unknown(0) TCGA-GL-A59R-01 22 17488934 17488934 G A GAB4 Missense_Mutation p.S24L 0.33 deleterious_low_confidence(0) benign(0.32) TCGA-GL-A59R-01 22 41558757 41558757 A - EP300 Frame_Shift_Del p.N1236Mfs*41 0.28 TCGA-GL-A59R-01 2 152536245 152536245 G C NEB Missense_Mutation p.A1082G 0.56 probably_damaging(0.926) TCGA-GL-A59R-01 2 178257747 178257747 C T AGPS Missense_Mutation p.A77V 0.61 tolerated(0.32) benign(0.002) TCGA-GL-A59R-01 2 178592751 178592751 T C PDE11A Intron 0.42 TCGA-GL-A59R-01 2 179598544 179598544 A C TTN Missense_Mutation p.V5191G 0.43 TCGA-GL-A59R-01 2 179598545 179598545 C A TTN Missense_Mutation p.V5191L 0.43 TCGA-GL-A59R-01 2 186672719 186672719 T C FSIP2 Missense_Mutation p.I6318T 0.08 probably_damaging(0.999) TCGA-GL-A59R-01 2 198265131 198265131 T C SF3B1 Missense_Mutation p.T916A 0.44 tolerated(0.2) benign(0.013) TCGA-GL-A59R-01 2 201535405 201535405 C A AOX1 3'UTR 0.29 TCGA-GL-A59R-01 2 30987162 30987162 A G CAPN13 Missense_Mutation p.S179P 0.39 deleterious(0.02) possibly_damaging(0.85) TCGA-GL-A59R-01 2 61705989 61705989 T C XPO1 Missense_Mutation p.N1061S 0.42 tolerated(0.12) benign(0.41) TCGA-GL-A59R-01 2 62067237 62067237 T C FAM161A Missense_Mutation p.K301R 0.44 tolerated(0.28) benign(0.109) TCGA-GL-A59R-01 2 74656034 74656034 A G RTKN Missense_Mutation p.L264P 0.29 deleterious(0) probably_damaging(0.984) TCGA-GL-A59R-01 2 84846836 84846836 T G DNAH6 Silent p.L1200L 0.42 TCGA-GL-A59R-01 3 123675184 123675185 - T CCDC14 Intron 0.27 TCGA-GL-A59R-01 3 12653543 12653543 T - RAF1 Frame_Shift_Del p.M76* 0.31 TCGA-GL-A59R-01 3 14559362 14559362 G A GRIP2 RNA 0.64 TCGA-GL-A59R-01 3 170078913 170078913 A T SKIL Missense_Mutation p.E265V 0.35 deleterious(0.01) probably_damaging(0.915) TCGA-GL-A59R-01 3 38966961 38966961 C G SCN11A Missense_Mutation p.L219F 0.39 deleterious(0) possibly_damaging(0.751) TCGA-GL-A59R-01 3 48465285 48465285 C T PLXNB1 Missense_Mutation p.A246T 0.46 tolerated(1) possibly_damaging(0.839) TCGA-GL-A59R-01 3 50513567 50513567 G T CACNA2D2 Silent p.G90G 0.33 TCGA-GL-A59R-01 3 52505969 52505969 C T NISCH Silent p.F183F 0.06 TCGA-GL-A59R-01 4 71629308 71629308 G A RUFY3 Missense_Mutation p.G131E 0.48 deleterious(0.02) probably_damaging(0.971) TCGA-GL-A59R-01 5 13814812 13814812 C A DNAH5 Nonsense_Mutation p.E2378* 0.43 TCGA-GL-A59R-01 5 139906526 139906526 G A ANKHD1 Missense_Mutation p.V1652M 0.42 possibly_damaging(0.527) TCGA-GL-A59R-01 5 140573413 140573413 A T PCDHB10 Missense_Mutation p.R430W 0.24 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-GL-A59R-01 5 21459831 21459831 A G GUSBP1 RNA 0.40 TCGA-GL-A59R-01 5 60840060 60840060 G T ZSWIM6 Missense_Mutation p.Q1188H 0.37 deleterious(0.03) probably_damaging(0.997) TCGA-GL-A59R-01 5 6600168 6600168 G A NSUN2 Silent p.T725T 0.46 TCGA-GL-A59R-01 5 7867451 7867451 T C FASTKD3 Missense_Mutation p.E249G 0.30 tolerated(0.08) benign(0.077) TCGA-GL-A59R-01 6 111912891 111912891 A - TRAF3IP2 Frame_Shift_Del p.F133Lfs*63 0.24 TCGA-GL-A59R-01 6 13230366 13230366 C A PHACTR1 Silent p.P444P 0.47 TCGA-GL-A59R-01 6 21598388 21598388 T A SOX4 3'UTR 0.49 TCGA-GL-A59R-01 6 29639314 29639314 G A MOG 3'UTR 0.45 TCGA-GL-A59R-01 6 30917934 30917934 A G DPCR1 Missense_Mutation p.R565G 0.33 deleterious(0.02) benign(0) TCGA-GL-A59R-01 6 31938842 31938842 C T DXO Missense_Mutation p.E147K 0.42 deleterious(0) probably_damaging(0.996) TCGA-GL-A59R-01 6 49753793 49753793 C G PGK2 Missense_Mutation p.V370L 0.29 deleterious(0.01) benign(0.012) TCGA-GL-A59R-01 6 90466095 90466095 T - MDN1 Frame_Shift_Del p.Y906Lfs*2 0.26 TCGA-GL-A59R-01 7 114302186 114302186 G A FOXP2 Missense_Mutation p.V597I 0.23 deleterious(0) probably_damaging(0.969) TCGA-GL-A59R-01 7 116415114 116415114 G A MET Missense_Mutation p.V1088M 0.62 deleterious(0.01) probably_damaging(0.995) TCGA-GL-A59R-01 7 116415115 116415115 T G MET Missense_Mutation p.V1088G 0.62 deleterious(0) probably_damaging(0.997) TCGA-GL-A59R-01 7 121717970 121717970 C A AASS Missense_Mutation p.G862W 0.09 deleterious(0) probably_damaging(1) TCGA-GL-A59R-01 7 121717971 121717971 A G AASS Silent p.Y861Y 0.10 TCGA-GL-A59R-01 7 138566237 138566237 G T KIAA1549 Missense_Mutation p.P1376T 0.27 deleterious(0) probably_damaging(1) TCGA-GL-A59R-01 8 41547822 41547822 G A ANK1 Silent p.L1384L 0.41 TCGA-GL-A59R-01 8 81412103 81412103 T C ZBTB10 Silent p.S449S 0.32 TCGA-GL-A59R-01 8 87447714 87447715 - AATTTTT WWP1 Frame_Shift_Ins p.G546Nfs*5 0.17 TCGA-GL-A59R-01 8 87447715 87447715 G T WWP1 Missense_Mutation p.G546C 0.16 deleterious(0.02) benign(0.002) TCGA-GL-A59R-01 9 136901648 136901648 T G BRD3 Intron 0.31 TCGA-GL-A59R-01 9 32459420 32459420 G T DDX58 Nonsense_Mutation p.C810* 0.10 TCGA-GL-A59R-01 9 5078361 5078361 G T JAK2 Missense_Mutation p.R683I 0.34 deleterious(0) probably_damaging(1) TCGA-GL-A59R-01 9 79820297 79820297 A G VPS13A Missense_Mutation p.I86V 0.60 tolerated(0.99) benign(0.008) TCGA-GL-A59R-01 9 99799669 99799669 T G CTSV Missense_Mutation p.E87D 0.49 deleterious(0.01) benign(0.439) TCGA-GL-A59T-01 10 100177417 100177417 G A HPS1 Silent p.A669A 0.28 TCGA-GL-A59T-01 10 101559080 101559080 G A ABCC2 Silent p.L328L 0.20 TCGA-GL-A59T-01 10 126100644 126100644 T - OAT Frame_Shift_Del p.T33Qfs*28 0.26 TCGA-GL-A59T-01 10 7811178 7811178 C T KIN Splice_Site p.X266_splice 0.39 TCGA-GL-A59T-01 10 96005839 96005839 A G PLCE1 Missense_Mutation p.I853V 0.10 tolerated(0.06) benign(0.094) TCGA-GL-A59T-01 11 118895661 118895661 T C SLC37A4 Missense_Mutation p.I439V 0.34 tolerated(0.09) benign(0.049) TCGA-GL-A59T-01 11 58978564 58978564 C T MPEG1 Missense_Mutation p.R592K 0.36 tolerated(0.17) benign(0.345) TCGA-GL-A59T-01 11 64517951 64517951 T A PYGM Missense_Mutation p.T692S 0.33 deleterious(0) probably_damaging(0.995) TCGA-GL-A59T-01 11 71733436 71733436 G - NUMA1 Frame_Shift_Del p.M108* 0.21 TCGA-GL-A59T-01 11 73584202 73584202 C A COA4 Missense_Mutation p.E74D 0.15 tolerated(0.1) possibly_damaging(0.899) TCGA-GL-A59T-01 11 82560214 82560214 T C PRCP Silent p.P287P 0.20 TCGA-GL-A59T-01 11 985477 985477 T C AP2A2 Missense_Mutation p.I286T 0.36 deleterious(0.04) possibly_damaging(0.871) TCGA-GL-A59T-01 12 120428098 120428098 C T CCDC64 Silent p.L142L 0.24 TCGA-GL-A59T-01 12 50847398 50847398 T C LARP4 Silent p.Y320Y 0.26 TCGA-GL-A59T-01 12 6637492 6637492 T C NCAPD2 Silent p.A1099A 0.22 TCGA-GL-A59T-01 12 88474150 88474150 C T CEP290 Missense_Mutation p.E1679K 0.40 possibly_damaging(0.758) TCGA-GL-A59T-01 12 88514780 88514780 A C CEP290 Nonsense_Mutation p.Y451* 0.56 TCGA-GL-A59T-01 12 99640158 99640158 G A ANKS1B Silent p.S747S 0.49 TCGA-GL-A59T-01 13 94938687 94938687 A C GPC6 Missense_Mutation p.E321A 0.38 deleterious(0) possibly_damaging(0.728) TCGA-GL-A59T-01 14 102028834 102028834 G A DIO3 3'UTR 0.05 TCGA-GL-A59T-01 14 74409353 74409353 A T FAM161B Missense_Mutation p.S394T 0.25 tolerated(0.39) benign(0.012) TCGA-GL-A59T-01 14 95906070 95906070 C T SYNE3 Missense_Mutation p.A709T 0.06 deleterious(0.04) possibly_damaging(0.824) TCGA-GL-A59T-01 16 2201715 2201715 A G RAB26 Missense_Mutation p.Q123R 0.26 deleterious(0) possibly_damaging(0.883) TCGA-GL-A59T-01 16 2550436 2550436 G T TBC1D24 Silent p.L490L 0.20 TCGA-GL-A59T-01 16 53288491 53288491 A G CHD9 Missense_Mutation p.S1335G 0.30 probably_damaging(0.937) TCGA-GL-A59T-01 16 72016037 72016037 A G PKD1L3 RNA 0.22 TCGA-GL-A59T-01 16 82033252 82033252 G T SDR42E1 Missense_Mutation p.P216T 0.29 deleterious(0.03) benign(0.314) TCGA-GL-A59T-01 17 18653384 18653384 G T FBXW10 Missense_Mutation p.M311I 0.15 deleterious(0) benign(0.004) TCGA-GL-A59T-01 17 37821723 37821723 G A TCAP Splice_Site p.X37_splice 0.25 TCGA-GL-A59T-01 17 38978229 38978229 G A KRT10 Silent p.I203I 0.61 TCGA-GL-A59T-01 17 72956118 72956118 T G HID1 Intron 0.21 TCGA-GL-A59T-01 17 73584690 73584690 G C MYO15B 5'Flank 0.40 TCGA-GL-A59T-01 17 78811724 78811724 A C RPTOR Missense_Mutation p.Q380P 0.21 deleterious(0.04) possibly_damaging(0.759) TCGA-GL-A59T-01 19 39421878 39421878 T C MRPS12 5'UTR 0.43 TCGA-GL-A59T-01 19 45324231 45324233 AAC TT BCAM 3'UTR 0.20 TCGA-GL-A59T-01 19 50970983 50970983 C T FAM71E1 Missense_Mutation p.A199T 0.31 deleterious(0.04) possibly_damaging(0.455) TCGA-GL-A59T-01 19 52496371 52496371 G A ZNF615 Missense_Mutation p.A664V 0.30 tolerated(0.3) benign(0.029) TCGA-GL-A59T-01 19 52496372 52496372 C T ZNF615 Missense_Mutation p.A664T 0.31 tolerated(0.51) benign(0.432) TCGA-GL-A59T-01 19 53572249 53572249 T C ZNF160 Missense_Mutation p.E513G 0.34 deleterious(0.01) probably_damaging(0.984) TCGA-GL-A59T-01 19 58084873 58084873 A T ZNF416 Nonsense_Mutation p.C133* 0.40 TCGA-GL-A59T-01 19 9048182 9048182 C T MUC16 Missense_Mutation p.G11150E 0.25 benign(0.007) TCGA-GL-A59T-01 1 153947046 153947046 G A JTB 3'UTR 0.29 TCGA-GL-A59T-01 1 154033034 154033049 TTCCATGTAAGTGATG CTCC NUP210L In_Frame_Del p.I940_M943del 0.26 TCGA-GL-A59T-01 1 155172114 155172114 G A THBS3 Nonsense_Mutation p.R346* 0.27 TCGA-GL-A59T-01 1 161089159 161089159 G A NIT1 Missense_Mutation p.E112K 0.32 tolerated(0.46) benign(0.001) TCGA-GL-A59T-01 1 176525851 176525851 G A PAPPA2 Silent p.G131G 0.08 TCGA-GL-A59T-01 1 17674521 17674521 A T PADI4 Missense_Mutation p.E378V 0.29 deleterious(0.02) benign(0.424) TCGA-GL-A59T-01 1 202566051 202566052 AG - SYT2 Frame_Shift_Del p.L365Gfs*43 0.19 TCGA-GL-A59T-01 1 2433966 2433966 C - PLCH2 Frame_Shift_Del p.C1000Afs*4 0.25 TCGA-GL-A59T-01 1 247053281 247053281 C T AHCTF1 Missense_Mutation p.E720K 0.29 tolerated(0.13) benign(0.13) TCGA-GL-A59T-01 1 52849239 52849239 G A ORC1 Silent p.L622L 0.30 TCGA-GL-A59T-01 1 95710051 95710051 A T RWDD3 Missense_Mutation p.S124C 0.28 tolerated(0.06) benign(0.005) TCGA-GL-A59T-01 1 99764611 99764611 T C LPPR4 Missense_Mutation p.C187R 0.37 deleterious(0) probably_damaging(1) TCGA-GL-A59T-01 20 33567508 33567512 TCGCT - MYH7B Frame_Shift_Del p.F125Lfs*99 0.41 TCGA-GL-A59T-01 20 39813667 39813667 G T ZHX3 3'UTR 0.21 TCGA-GL-A59T-01 20 5086868 5086868 C T TMEM230 Missense_Mutation p.G126D 0.06 deleterious(0) probably_damaging(0.988) TCGA-GL-A59T-01 20 9440354 9440354 G A PLCB4 Missense_Mutation p.E1037K 0.32 tolerated(0.09) benign(0.318) TCGA-GL-A59T-01 21 27328004 27328004 G C APP Silent p.T508T 0.25 TCGA-GL-A59T-01 22 19967613 19967613 C A ARVCF Missense_Mutation p.R350L 0.44 tolerated(0.09) benign(0.386) TCGA-GL-A59T-01 22 40055466 40055466 A G CACNA1I Missense_Mutation p.K787E 0.35 deleterious(0) possibly_damaging(0.621) TCGA-GL-A59T-01 22 46654194 46654194 G A PKDREJ Nonsense_Mutation p.Q1676* 0.40 TCGA-GL-A59T-01 22 46677589 46677589 A G TTC38 Missense_Mutation p.M237V 0.34 deleterious(0) possibly_damaging(0.688) TCGA-GL-A59T-01 2 113089251 113089251 G C ZC3H6 Missense_Mutation p.S919T 0.36 tolerated(0.14) benign(0.26) TCGA-GL-A59T-01 2 163046173 163046173 A G FAP Silent p.D514D 0.60 TCGA-GL-A59T-01 2 178416779 178416779 C T TTC30B Missense_Mutation p.S238N 0.23 deleterious(0.01) probably_damaging(1) TCGA-GL-A59T-01 2 216232592 216232592 A G FN1 Missense_Mutation p.S2338P 0.31 tolerated(0.24) probably_damaging(1) TCGA-GL-A59T-01 2 220406754 220406754 G A CHPF Missense_Mutation p.R158W 0.07 deleterious(0) benign(0.166) TCGA-GL-A59T-01 2 233498655 233498656 - AC EFHD1 Frame_Shift_Ins p.E83Rfs*31 0.47 TCGA-GL-A59T-01 2 234749356 234749356 G C HJURP Silent p.G690G 0.54 TCGA-GL-A59T-01 2 25505312 25505312 G - DNMT3A Frame_Shift_Del p.A149Gfs*13 0.34 TCGA-GL-A59T-01 2 3392363 3392363 G C TRAPPC12 Silent p.V323V 0.48 TCGA-GL-A59T-01 2 97482217 97482217 G T CNNM3 Missense_Mutation p.G68V 0.09 deleterious(0) benign(0.272) TCGA-GL-A59T-01 3 122437696 122437696 A G PARP14 Silent p.T1566T 0.26 TCGA-GL-A59T-01 3 132379518 132379518 A T UBA5 Missense_Mutation p.E46V 0.48 deleterious(0.02) benign(0.251) TCGA-GL-A59T-01 3 138665779 138665779 T C FOXL2 5'UTR 0.30 TCGA-GL-A59T-01 3 179322636 179322636 G A NDUFB5 Silent p.S11S 0.35 TCGA-GL-A59T-01 3 183226047 183226047 C T KLHL6 Missense_Mutation p.E237K 0.25 deleterious(0) probably_damaging(0.971) TCGA-GL-A59T-01 3 3080674 3080675 - TA CNTN4 Frame_Shift_Ins p.T719* 0.08 TCGA-GL-A59T-01 3 33415410 33415410 C T FBXL2 Silent p.C218C 0.46 TCGA-GL-A59T-01 3 56649978 56649978 A C CCDC66 Silent p.A580A 0.16 TCGA-GL-A59T-01 4 17710845 17710845 G T FAM184B Silent p.G188G 0.15 TCGA-GL-A59T-01 4 68930403 68930403 C A TMPRSS11F Nonsense_Mutation p.G339* 0.37 TCGA-GL-A59T-01 5 1093744 1093744 C A SLC12A7 Silent p.V82V 0.29 TCGA-GL-A59T-01 5 138727939 138727939 A G PROB1 Silent p.Y944Y 0.23 TCGA-GL-A59T-01 5 145638017 145638017 A G RBM27 Missense_Mutation p.N534D 0.05 tolerated(0.08) probably_damaging(0.989) TCGA-GL-A59T-01 5 176562915 176562915 T G NSD1 Missense_Mutation p.L271V 0.34 deleterious_low_confidence(0.02) benign(0.138) TCGA-GL-A59T-01 5 1816058 1816058 G A NDUFS6 3'UTR 0.32 TCGA-GL-A59T-01 5 53816623 53816623 C A SNX18 3'UTR 0.31 TCGA-GL-A59T-01 6 26124134 26124135 TT CTATA HIST1H2BC 5'UTR 0.09 TCGA-GL-A59T-01 6 39607523 39607523 C T KIF6 Missense_Mutation p.G88S 0.11 deleterious(0) probably_damaging(1) TCGA-GL-A59T-01 6 42176601 42176601 T A MRPS10 Missense_Mutation p.T173S 0.30 tolerated(0.05) possibly_damaging(0.676) TCGA-GL-A59T-01 6 44197513 44197513 C A SLC29A1 Missense_Mutation p.S100Y 0.35 deleterious(0) probably_damaging(0.992) TCGA-GL-A59T-01 6 74227601 74227601 C T EEF1A1 Missense_Mutation p.V441M 0.26 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-GL-A59T-01 6 84563845 84563845 C T RIPPLY2 Silent p.A68A 0.10 TCGA-GL-A59T-01 6 96657935 96657935 G A FUT9 3'UTR 0.50 TCGA-GL-A59T-01 7 100176068 100176068 C A LRCH4 Missense_Mutation p.A268S 0.08 tolerated(0.18) benign(0.26) TCGA-GL-A59T-01 7 141629867 141629867 G - CLEC5A 3'UTR 0.18 TCGA-GL-A59T-01 7 47698325 47698325 G A C7orf65 Silent p.L35L 0.06 TCGA-GL-A59T-01 7 5568199 5568199 G C ACTB Missense_Mutation p.P172R 0.03 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-GL-A59T-01 7 913091 913091 G C SUN1 3'UTR 0.40 TCGA-GL-A59T-01 7 92083893 92083893 A G GATAD1 Silent p.R171R 0.49 TCGA-GL-A59T-01 8 25224425 25224425 A G DOCK5 Missense_Mutation p.T1055A 0.09 deleterious(0.02) benign(0.049) TCGA-GL-A59T-01 8 38175506 38175506 C T WHSC1L1 Intron 0.33 TCGA-GL-A59T-01 9 114415510 114415510 T A DNAJC25 3'UTR 0.73 TCGA-GL-A59T-01 9 133738297 133738297 G A ABL1 Missense_Mutation p.D252N 0.69 deleterious(0.01) probably_damaging(0.982) TCGA-GL-A59T-01 9 134505712 134505712 C T RAPGEF1 Splice_Site p.X219_splice 0.09 TCGA-GL-A59T-01 9 5126752 5126752 T C JAK2 Silent p.A1120A 0.76 TCGA-GL-A59T-01 9 73736290 73736290 C T TRPM3 5'UTR 0.69 TCGA-GL-A59T-01 9 90321821 90321821 T G DAPK1 Missense_Mutation p.F1279V 0.73 deleterious(0) possibly_damaging(0.715) TCGA-GL-A59T-01 X 10062249 10062249 A T WWC3 Silent p.V195V 0.09 TCGA-GL-A59T-01 X 155010531 155010531 A C SPRY3 3'UTR 0.33 TCGA-GL-A59T-01 X 53584383 53584383 A G HUWE1 Silent p.T2722T 0.75 TCGA-GL-A9DC-01 10 101949109 101949109 A G CHUK 3'UTR 0.47 TCGA-GL-A9DC-01 10 124740027 124740027 G A PSTK Missense_Mutation p.G11D 0.49 tolerated_low_confidence(0.23) benign(0.004) TCGA-GL-A9DC-01 10 24911756 24911756 A G ARHGAP21 Intron 0.40 TCGA-GL-A9DC-01 10 60560753 60560753 T C BICC1 Silent p.C654C 0.35 TCGA-GL-A9DC-01 10 97784670 97784670 T A CC2D2B Splice_Site p.X280_splice 0.49 TCGA-GL-A9DC-01 10 99141485 99141485 G A RRP12 Missense_Mutation p.T436M 0.47 deleterious(0) benign(0.007) TCGA-GL-A9DC-01 11 10597782 10597782 G A MRVI1 3'UTR 0.41 TCGA-GL-A9DC-01 11 108593893 108593893 T A DDX10 Missense_Mutation p.S557T 0.46 tolerated(0.06) benign(0.04) TCGA-GL-A9DC-01 11 117031874 117031874 T C PAFAH1B2 Missense_Mutation p.L62P 0.06 deleterious(0.01) probably_damaging(0.982) TCGA-GL-A9DC-01 11 11924349 11924349 A G USP47 Silent p.K159K 0.42 TCGA-GL-A9DC-01 11 125791201 125791201 G C DDX25 Silent p.G439G 0.45 TCGA-GL-A9DC-01 11 126134972 126134972 G T SRPR Silent p.T469T 0.38 TCGA-GL-A9DC-01 11 4869827 4869827 G A OR51S1 Silent p.A204A 0.35 TCGA-GL-A9DC-01 11 58722267 58722267 T C GLYATL1 Missense_Mutation p.Y102H 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-GL-A9DC-01 11 62037675 62037675 G A SCGB2A2 5'UTR 0.39 TCGA-GL-A9DC-01 11 62600570 62600570 C A WDR74 Missense_Mutation p.V338L 0.42 tolerated(0.37) benign(0.001) TCGA-GL-A9DC-01 11 72408128 72408132 CTGCT - ARAP1 Frame_Shift_Del p.E1021Afs*4 0.35 TCGA-GL-A9DC-01 12 110760813 110760813 T C ATP2A2 Silent p.P160P 0.32 TCGA-GL-A9DC-01 12 118681252 118681252 T C TAOK3 Missense_Mutation p.K88E 0.59 deleterious(0) probably_damaging(0.934) TCGA-GL-A9DC-01 12 18891585 18891585 A C CAPZA3 Missense_Mutation p.Y128S 0.60 deleterious(0.04) probably_damaging(1) TCGA-GL-A9DC-01 12 21661461 21661461 A T GOLT1B Missense_Mutation p.I88F 0.56 tolerated(0.13) benign(0.121) TCGA-GL-A9DC-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.52 deleterious(0) benign(0.361) TCGA-GL-A9DC-01 12 40034792 40034792 A - C12orf40 Frame_Shift_Del p.K21Rfs*9 0.16 TCGA-GL-A9DC-01 12 57488550 57488550 C A NAB2 3'UTR 0.62 TCGA-GL-A9DC-01 12 7459269 7459269 A T ACSM4 Silent p.G114G 0.66 TCGA-GL-A9DC-01 12 81101509 81101509 A C MYF6 Missense_Mutation p.D4A 0.57 deleterious(0.01) probably_damaging(0.998) TCGA-GL-A9DC-01 12 94543226 94543226 G A PLXNC1 Missense_Mutation p.G160D 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-GL-A9DC-01 13 41134273 41134273 A G FOXO1 Missense_Mutation p.M452T 0.46 deleterious(0.04) benign(0.008) TCGA-GL-A9DC-01 13 52598354 52598354 C G ALG11 Missense_Mutation p.A163G 0.43 deleterious(0.02) possibly_damaging(0.788) TCGA-GL-A9DC-01 14 102431117 102431140 TGCAGAAGCACCTGCGCAAGCTGG - DYNC1H1 In_Frame_Del p.Q31_V38del 0.36 TCGA-GL-A9DC-01 14 105399474 105399474 C G PLD4 3'UTR 0.69 TCGA-GL-A9DC-01 14 24900048 24900048 G T KHNYN Missense_Mutation p.G38W 0.53 deleterious(0.02) probably_damaging(0.932) TCGA-GL-A9DC-01 14 53386039 53386039 A C FERMT2 Missense_Mutation p.W65G 0.35 deleterious(0) probably_damaging(0.958) TCGA-GL-A9DC-01 15 27777821 27777821 T - GABRG3 Frame_Shift_Del p.F400Lfs*37 0.17 TCGA-GL-A9DC-01 15 34551060 34551067 TGTTCCTT - SLC12A6 Frame_Shift_Del p.K164* 0.18 TCGA-GL-A9DC-01 15 38988810 38988810 T C C15orf53 Translation_Start_Site p.M1? 0.48 deleterious_low_confidence(0.02) benign(0.092) TCGA-GL-A9DC-01 15 40763236 40763236 C A CHST14 5'UTR 0.58 TCGA-GL-A9DC-01 15 42500466 42500466 C G VPS39 5'UTR 0.37 TCGA-GL-A9DC-01 15 59942867 59942867 C A GTF2A2 Splice_Site p.X59_splice 0.30 TCGA-GL-A9DC-01 15 63946487 63946487 C G HERC1 Missense_Mutation p.C3374S 0.45 probably_damaging(0.989) TCGA-GL-A9DC-01 16 1691167 1691167 T C CRAMP1L Missense_Mutation p.L269P 0.36 deleterious(0) probably_damaging(1) TCGA-GL-A9DC-01 16 4743827 4743828 GC A NUDT16L1 Frame_Shift_Del p.A34Tfs*18 0.35 TCGA-GL-A9DC-01 17 19480761 19480761 A G SLC47A1 Silent p.K536K 0.55 TCGA-GL-A9DC-01 17 42756205 42756205 A G CCDC43 3'UTR 0.56 TCGA-GL-A9DC-01 17 45012737 45012738 - A GOSR2 Intron 0.67 TCGA-GL-A9DC-01 17 60061702 60061702 T G MED13 Missense_Mutation p.E906D 0.31 tolerated(0.36) probably_damaging(0.99) TCGA-GL-A9DC-01 17 66533874 66533874 T C FAM20A Missense_Mutation p.K457R 0.23 tolerated(0.8) benign(0.009) TCGA-GL-A9DC-01 17 7162047 7162047 A G ELP5 Intron 0.54 TCGA-GL-A9DC-01 17 72608790 72608790 C T CD300E 3'UTR 0.19 TCGA-GL-A9DC-01 17 76969173 76969173 A G LGALS3BP Missense_Mutation p.C170R 0.24 deleterious(0) probably_damaging(0.999) TCGA-GL-A9DC-01 17 79495707 79495707 C T FSCN2 Silent p.P50P 0.32 TCGA-GL-A9DC-01 17 79875730 79875730 C G SIRT7 Missense_Mutation p.E69D 0.59 tolerated(0.45) benign(0.009) TCGA-GL-A9DC-01 18 32890002 32890002 T A ZNF271 RNA 0.45 TCGA-GL-A9DC-01 18 44416418 44416418 A T PIAS2 Missense_Mutation p.F368L 0.07 deleterious(0) probably_damaging(0.973) TCGA-GL-A9DC-01 18 72352965 72352973 ATCAAAACC - ZNF407 In_Frame_Del p.S1564_P1566del 0.37 TCGA-GL-A9DC-01 18 73000963 73000963 G A TSHZ1 3'UTR 0.47 TCGA-GL-A9DC-01 19 11833785 11833785 T G ZNF823 Silent p.G188G 0.45 TCGA-GL-A9DC-01 19 2717307 2717307 C T DIRAS1 Silent p.T166T 0.39 TCGA-GL-A9DC-01 19 46294334 46294334 G C DMWD Silent p.L151L 0.33 TCGA-GL-A9DC-01 19 49132774 49132774 G A SPHK2 Nonsense_Mutation p.W570* 0.36 TCGA-GL-A9DC-01 19 49657747 49657747 C A HRC Missense_Mutation p.D250Y 0.38 deleterious(0.01) possibly_damaging(0.773) TCGA-GL-A9DC-01 19 50918121 50918121 T A POLD1 Missense_Mutation p.L813H 0.45 deleterious(0.01) probably_damaging(0.912) TCGA-GL-A9DC-01 19 53762550 53762564 TCTCCTGGGAACAGA - VN1R2 In_Frame_Del p.S308_R312del 0.34 TCGA-GL-A9DC-01 19 54080924 54080924 C T ZNF331 Silent p.L370L 0.45 TCGA-GL-A9DC-01 19 55748303 55748303 G A PPP6R1 Missense_Mutation p.S596F 0.40 deleterious(0) probably_damaging(0.999) TCGA-GL-A9DC-01 19 58326180 58326180 G A ZNF552 5'UTR 0.46 TCGA-GL-A9DC-01 1 12918882 12918890 ACCGAGACT - PRAMEF2 In_Frame_Del p.P7_L9del 0.39 TCGA-GL-A9DC-01 1 155005652 155005652 G - DCST2 Frame_Shift_Del p.S120Afs*4 0.32 TCGA-GL-A9DC-01 1 156622136 156622136 A C BCAN Missense_Mutation p.K465T 0.49 tolerated(0.53) benign(0.001) TCGA-GL-A9DC-01 1 16258823 16258823 C T SPEN Missense_Mutation p.P2030S 0.39 benign(0) TCGA-GL-A9DC-01 1 179887044 179887044 T C TOR1AIP1 Silent p.N474N 0.48 TCGA-GL-A9DC-01 1 183090998 183090998 G A LAMC1 Missense_Mutation p.E711K 0.47 deleterious(0.01) benign(0.269) TCGA-GL-A9DC-01 1 208390905 208390905 G A PLXNA2 Silent p.Y121Y 0.49 TCGA-GL-A9DC-01 1 211093156 211093156 A T KCNH1 Missense_Mutation p.Y430N 0.51 deleterious(0) probably_damaging(0.977) TCGA-GL-A9DC-01 1 214588010 214588010 A - PTPN14 Frame_Shift_Del p.L135Wfs*4 0.31 TCGA-GL-A9DC-01 1 226050526 226050526 C T TMEM63A Missense_Mutation p.V258I 0.36 tolerated(0.22) benign(0.03) TCGA-GL-A9DC-01 1 35650120 35650120 A T SFPQ Silent p.T687T 0.47 TCGA-GL-A9DC-01 1 3742942 3742942 A G CEP104 Silent p.Y749Y 0.42 TCGA-GL-A9DC-01 1 40724001 40724001 T A ZMPSTE24 Missense_Mutation p.F20I 0.34 deleterious(0.01) possibly_damaging(0.805) TCGA-GL-A9DC-01 1 47905188 47905188 G C FOXD2 Missense_Mutation p.A461P 0.08 deleterious_low_confidence(0) unknown(0) TCGA-GL-A9DC-01 1 92479936 92479936 G A BRDT 3'UTR 0.04 TCGA-GL-A9DC-01 20 30738477 30738477 C A TM9SF4 Silent p.T380T 0.43 TCGA-GL-A9DC-01 20 34832729 34832729 A C AAR2 Missense_Mutation p.K290Q 0.43 tolerated(0.31) benign(0.023) TCGA-GL-A9DC-01 20 52569985 52569991 AGCCCCC - BCAS1 Frame_Shift_Del p.G554Sfs*101 0.31 TCGA-GL-A9DC-01 21 35477264 35477268 AGTGT - SLC5A3 3'UTR 0.77 TCGA-GL-A9DC-01 22 22311401 22311401 G A TOP3B 3'Flank 0.19 TCGA-GL-A9DC-01 22 37333782 37333782 G T CSF2RB Missense_Mutation p.Q644H 0.38 deleterious(0) probably_damaging(0.995) TCGA-GL-A9DC-01 22 41488800 41488800 C A EP300 5'UTR 0.47 TCGA-GL-A9DC-01 22 41642577 41642577 C T RANGAP1 3'UTR 0.41 TCGA-GL-A9DC-01 22 42280845 42280845 G A SREBF2 Splice_Site p.X680_splice 0.46 TCGA-GL-A9DC-01 22 42280846 42280846 G T SREBF2 Missense_Mutation p.G680V 0.46 deleterious(0) probably_damaging(0.952) TCGA-GL-A9DC-01 2 112608350 112608351 - A ANAPC1 Intron 0.28 TCGA-GL-A9DC-01 2 113089842 113089843 AC G ZC3H6 Frame_Shift_Del p.D1116Gfs*22 0.23 TCGA-GL-A9DC-01 2 120124602 120124602 C A DBI 5'Flank 0.49 TCGA-GL-A9DC-01 2 121746958 121746958 C G GLI2 Silent p.A1156A 0.40 TCGA-GL-A9DC-01 2 179478924 179478924 C G TTN Missense_Mutation p.K16400N 0.34 TCGA-GL-A9DC-01 2 24930212 24930212 A - NCOA1 Frame_Shift_Del p.K625Nfs*9 0.27 TCGA-GL-A9DC-01 2 43986044 43986044 T G PLEKHH2 Missense_Mutation p.L1316R 0.52 deleterious(0) possibly_damaging(0.906) TCGA-GL-A9DC-01 2 85276536 85276536 C A KCMF1 Missense_Mutation p.L217I 0.43 tolerated(0.16) benign(0.007) TCGA-GL-A9DC-01 2 86709141 86709141 T A KDM3A Missense_Mutation p.H867Q 0.39 tolerated(1) benign(0.015) TCGA-GL-A9DC-01 2 86839326 86839326 T - RNF103 Frame_Shift_Del p.R146Sfs*54 0.26 TCGA-GL-A9DC-01 2 97494855 97494855 G C CNNM3 Missense_Mutation p.K681N 0.54 deleterious(0.03) benign(0.347) TCGA-GL-A9DC-01 3 126200995 126200995 A G UROC1 3'UTR 0.53 TCGA-GL-A9DC-01 3 172065011 172065011 A T FNDC3B Missense_Mutation p.S792C 0.47 tolerated(1) benign(0.013) TCGA-GL-A9DC-01 3 19492810 19492810 G A KCNH8 Missense_Mutation p.R580H 0.07 tolerated(0.51) possibly_damaging(0.537) TCGA-GL-A9DC-01 3 196215554 196215554 G T RNF168 Missense_Mutation p.A101D 0.43 deleterious(0.04) benign(0.002) TCGA-GL-A9DC-01 3 38017370 38017370 C - CTDSPL Frame_Shift_Del p.H231Ifs*15 0.23 TCGA-GL-A9DC-01 3 38071127 38071127 C A PLCD1 5'Flank 0.43 TCGA-GL-A9DC-01 3 48956576 48956576 C T ARIH2OS Missense_Mutation p.G3R 0.41 tolerated_low_confidence(0.27) probably_damaging(0.98) TCGA-GL-A9DC-01 3 49934311 49934311 C T MST1R Silent p.G732G 0.41 TCGA-GL-A9DC-01 3 53221398 53221398 C G PRKCD Missense_Mutation p.H465Q 0.39 deleterious(0.02) probably_damaging(1) TCGA-GL-A9DC-01 3 56694972 56694972 A - FAM208A Frame_Shift_Del p.Y412Ifs*6 0.26 TCGA-GL-A9DC-01 3 62423814 62423814 C T CADPS Missense_Mutation p.V1248I 0.36 tolerated(0.46) benign(0.213) TCGA-GL-A9DC-01 4 100128709 100128709 G T ADH6 Missense_Mutation p.S286R 0.39 deleterious(0.01) probably_damaging(0.923) TCGA-GL-A9DC-01 4 39206803 39206804 - T WDR19 Frame_Shift_Ins p.L214Ffs*5 0.42 TCGA-GL-A9DC-01 4 85598373 85598373 C A WDFY3 Missense_Mutation p.C3479F 0.45 deleterious(0) probably_damaging(0.998) TCGA-GL-A9DC-01 4 85598374 85598374 A G WDFY3 Missense_Mutation p.C3479R 0.46 deleterious(0) probably_damaging(0.998) TCGA-GL-A9DC-01 5 1087135 1087135 G A SLC12A7 Silent p.Y186Y 0.48 TCGA-GL-A9DC-01 5 140256290 140256290 C T PCDHA12 Silent p.S411S 0.47 TCGA-GL-A9DC-01 5 140563222 140563222 T C PCDHB16 Missense_Mutation p.I363T 0.40 tolerated_low_confidence(1) benign(0.004) TCGA-GL-A9DC-01 5 149927825 149927825 C T NDST1 Missense_Mutation p.H731Y 0.51 tolerated(1) benign(0.01) TCGA-GL-A9DC-01 5 150443283 150443286 CATC ATATATT TNIP1 In_Frame_Ins p.M54delinsIY 0.30 TCGA-GL-A9DC-01 5 34688329 34688329 G A RAI14 Silent p.P7P 0.34 TCGA-GL-A9DC-01 5 76732151 76732151 C T WDR41 Missense_Mutation p.E388K 0.48 deleterious(0.02) possibly_damaging(0.887) TCGA-GL-A9DC-01 5 7831994 7831994 T A C5orf49 Missense_Mutation p.E138V 0.36 tolerated(0.07) benign(0.004) TCGA-GL-A9DC-01 6 123046657 123046657 A C PKIB 3'UTR 0.25 TCGA-GL-A9DC-01 6 167591988 167591988 G - TCP10L2 Frame_Shift_Del p.T206Lfs*58 0.20 TCGA-GL-A9DC-01 6 31963250 31963250 A C C4A Missense_Mutation p.K1030Q 0.33 tolerated(0.2) benign(0.013) TCGA-GL-A9DC-01 6 51613145 51613145 T A PKHD1 Missense_Mutation p.N3090I 0.44 tolerated(0.43) benign(0.014) TCGA-GL-A9DC-01 6 86324737 86324740 CTCG - SYNCRIP Frame_Shift_Del p.R536Vfs*25 0.36 TCGA-GL-A9DC-01 7 100802348 100802348 G C AP1S1 Missense_Mutation p.E100D 0.30 deleterious(0) probably_damaging(0.995) TCGA-GL-A9DC-01 7 100802349 100802349 C T AP1S1 Silent p.L101L 0.29 TCGA-GL-A9DC-01 7 100860559 100860559 G - PLOD3 5'UTR 0.27 TCGA-GL-A9DC-01 7 111535707 111535707 C A DOCK4 Missense_Mutation p.R516S 0.43 tolerated(0.13) possibly_damaging(0.688) TCGA-GL-A9DC-01 7 12728621 12728621 C T ARL4A 3'UTR 0.40 TCGA-GL-A9DC-01 7 151478467 151478467 T G PRKAG2 Missense_Mutation p.R79S 0.42 deleterious_low_confidence(0.01) benign(0.118) TCGA-GL-A9DC-01 7 155530893 155530893 A - RBM33 Frame_Shift_Del p.A512Hfs*138 0.30 TCGA-GL-A9DC-01 7 1607276 1607276 A T PSMG3 3'UTR 0.36 TCGA-GL-A9DC-01 7 21641145 21641145 C T DNAH11 Missense_Mutation p.T1186I 0.34 possibly_damaging(0.465) TCGA-GL-A9DC-01 7 27224287 27224287 G A HOXA11 Silent p.Y159Y 0.38 TCGA-GL-A9DC-01 7 6068606 6068606 G C EIF2AK1 Missense_Mutation p.L464V 0.39 deleterious(0) probably_damaging(0.985) TCGA-GL-A9DC-01 7 76071278 76071278 C T ZP3 Silent p.L394L 0.50 TCGA-GL-A9DC-01 7 93055856 93055856 A T CALCR Missense_Mutation p.W447R 0.43 deleterious(0.03) probably_damaging(0.971) TCGA-GL-A9DC-01 7 99145242 99145243 - T FAM200A Frame_Shift_Ins p.N263Kfs*7 0.30 TCGA-GL-A9DC-01 8 124659249 124659249 A G KLHL38 Silent p.Y452Y 0.42 TCGA-GL-A9DC-01 8 3063031 3063031 T G CSMD1 Missense_Mutation p.E1660A 0.34 possibly_damaging(0.702) TCGA-GL-A9DC-01 8 48647877 48647877 A T SPIDR Missense_Mutation p.E871D 0.42 tolerated(0.09) possibly_damaging(0.706) TCGA-GL-A9DC-01 8 59510054 59510055 - C NSMAF Frame_Shift_Ins p.Q593Afs*20 0.28 TCGA-GL-A9DC-01 9 104238139 104238139 T A TMEM246 3'UTR 0.48 TCGA-GL-A9DC-01 9 130494232 130494232 C T TOR2A 3'UTR 0.44 TCGA-GL-A9DC-01 9 139873840 139873840 C T PTGDS Intron 0.36 TCGA-GL-A9DC-01 9 77407562 77407567 ATTGGA GG TRPM6 Frame_Shift_Del p.P838Lfs*64 0.48 TCGA-GL-A9DC-01 X 10085226 10085226 G A WWC3 Missense_Mutation p.R376H 0.46 deleterious(0) probably_damaging(0.996) TCGA-GL-A9DC-01 X 48761035 48761035 G T SLC35A2 Intron 0.55 TCGA-GL-A9DC-01 X 53223343 53223343 C T KDM5C Missense_Mutation p.G1339D 0.46 tolerated(0.51) benign(0.001) TCGA-GL-A9DC-01 X 63488376 63488376 G C MTMR8 3'UTR 0.45 TCGA-GL-A9DC-01 X 77131066 77131066 A G MAGT1 Missense_Mutation p.L76P 0.42 deleterious(0) probably_damaging(0.99) TCGA-GL-A9DD-01 10 101802229 101802229 T C CPN1 Silent p.R444R 0.11 TCGA-GL-A9DD-01 10 113924280 113924282 TAC AA GPAM Splice_Site p.X436_splice 0.25 TCGA-GL-A9DD-01 10 22862322 22862322 A G PIP4K2A Missense_Mutation p.V186A 0.14 deleterious(0) possibly_damaging(0.7) TCGA-GL-A9DD-01 10 64976992 64976992 C T JMJD1C Missense_Mutation p.R218H 0.13 tolerated(0.14) benign(0.03) TCGA-GL-A9DD-01 10 70734488 70734488 A C DDX21 Missense_Mutation p.K577N 0.23 tolerated(0.25) benign(0.009) TCGA-GL-A9DD-01 10 74114543 74114543 T C DNAJB12 Missense_Mutation p.Y72C 0.22 deleterious(0.01) probably_damaging(0.922) TCGA-GL-A9DD-01 11 17113603 17113603 A C PIK3C2A Missense_Mutation p.C1528G 0.15 deleterious(0.02) possibly_damaging(0.734) TCGA-GL-A9DD-01 11 47745677 47745677 T G FNBP4 Silent p.I789I 0.18 TCGA-GL-A9DD-01 11 7111690 7111690 A - RBMXL2 3'UTR 0.14 TCGA-GL-A9DD-01 12 1017829 1017829 G C WNK1 Silent p.T2340T 0.17 TCGA-GL-A9DD-01 12 49047696 49047696 G A KANSL2 3'UTR 0.18 TCGA-GL-A9DD-01 12 49171962 49171964 GCT - ADCY6 In_Frame_Del p.Q314del 0.35 TCGA-GL-A9DD-01 12 56669848 56669848 G T CS Missense_Mutation p.F240L 0.20 tolerated(0.32) benign(0.244) TCGA-GL-A9DD-01 12 83251151 83251151 T C TMTC2 Missense_Mutation p.L149P 0.16 deleterious(0) probably_damaging(0.998) TCGA-GL-A9DD-01 13 110437628 110437628 T A IRS2 Missense_Mutation p.E258V 0.20 deleterious(0) probably_damaging(1) TCGA-GL-A9DD-01 13 75898483 75898483 A T TBC1D4 Silent p.L696L 0.19 TCGA-GL-A9DD-01 14 21969115 21969115 C G METTL3 Missense_Mutation p.E352D 0.24 tolerated(0.44) benign(0.003) TCGA-GL-A9DD-01 14 64194241 64194241 T A SGPP1 Missense_Mutation p.E141V 0.17 deleterious(0) probably_damaging(1) TCGA-GL-A9DD-01 14 71518644 71518644 T A PCNX Missense_Mutation p.S1498T 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-GL-A9DD-01 14 92469868 92469876 CTCTTGTAA - TRIP11 In_Frame_Del p.L1482_E1484del 0.12 TCGA-GL-A9DD-01 14 94527306 94527306 T G DDX24 Missense_Mutation p.E450D 0.15 tolerated(0.19) probably_damaging(0.999) TCGA-GL-A9DD-01 15 32322788 32322788 G T CHRNA7 5'UTR 0.18 TCGA-GL-A9DD-01 16 2692249 2692249 C T CTD-3126B10.4 3'Flank 0.18 TCGA-GL-A9DD-01 16 50325746 50325746 C T ADCY7 Missense_Mutation p.L159F 0.25 deleterious(0.05) benign(0.02) TCGA-GL-A9DD-01 16 72020154 72020154 T C PKD1L3 RNA 0.16 TCGA-GL-A9DD-01 17 2238104 2238115 AGCGCTTCTCCA CTCCG TSR1 Frame_Shift_Del p.V211Afs*11 0.23 TCGA-GL-A9DD-01 17 2238115 2238115 A G TSR1 Missense_Mutation p.V211A 0.30 tolerated(0.08) benign(0.009) TCGA-GL-A9DD-01 17 25919630 25919630 T - KSR1 Frame_Shift_Del p.L289Pfs*5 0.18 TCGA-GL-A9DD-01 17 26646334 26646334 C A TMEM97 Silent p.P23P 0.15 TCGA-GL-A9DD-01 17 37828984 37828984 G C PGAP3 3'UTR 0.08 TCGA-GL-A9DD-01 17 7011820 7011820 A T ASGR2 Missense_Mutation p.S105T 0.13 deleterious(0.03) benign(0.168) TCGA-GL-A9DD-01 17 74090635 74090635 C T EXOC7 Missense_Mutation p.R223H 0.06 deleterious(0) probably_damaging(0.997) TCGA-GL-A9DD-01 17 74136299 74136299 G - FOXJ1 Frame_Shift_Del p.H60Tfs*61 0.26 TCGA-GL-A9DD-01 19 11728063 11728063 A - ZNF627 Frame_Shift_Del p.K249Nfs*68 0.12 TCGA-GL-A9DD-01 19 15226999 15226999 C G ILVBL Missense_Mutation p.V479L 0.17 tolerated(0.72) benign(0.022) TCGA-GL-A9DD-01 19 15587251 15587251 T A PGLYRP2 Missense_Mutation p.N77I 0.17 tolerated(0.12) benign(0.056) TCGA-GL-A9DD-01 19 17343235 17343235 G A NR2F6 Missense_Mutation p.P381S 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-GL-A9DD-01 19 23544826 23544826 C G ZNF91 Missense_Mutation p.E319Q 0.19 deleterious(0) possibly_damaging(0.584) TCGA-GL-A9DD-01 19 42312958 42312958 A G CEACAM3 Missense_Mutation p.K178E 0.20 tolerated(0.09) benign(0.126) TCGA-GL-A9DD-01 19 45555367 45555367 A C CLASRP Silent p.R46R 0.24 TCGA-GL-A9DD-01 19 47260909 47260909 C A FKRP 3'UTR 0.14 TCGA-GL-A9DD-01 19 53208326 53208326 C A ZNF611 Missense_Mutation p.R661L 0.22 tolerated(0.54) benign(0.127) TCGA-GL-A9DD-01 19 55992960 55992961 CA T ZNF628 Frame_Shift_Del p.H134Sfs*6 0.18 TCGA-GL-A9DD-01 1 109192980 109192980 G A HENMT1 Silent p.Y203Y 0.19 TCGA-GL-A9DD-01 1 12052714 12052714 C T MFN2 Missense_Mutation p.A93V 0.19 tolerated(0.07) benign(0.244) TCGA-GL-A9DD-01 1 153433135 153433135 G C S100A7 5'UTR 0.20 TCGA-GL-A9DD-01 1 155449729 155449729 A G ASH1L Silent p.L978L 0.21 TCGA-GL-A9DD-01 1 156105104 156105104 G A LMNA Splice_Site p.X312_splice 0.20 TCGA-GL-A9DD-01 1 156510499 156510499 C A IQGAP3 Splice_Site p.X913_splice 0.15 TCGA-GL-A9DD-01 1 17256398 17256398 C - CROCC Frame_Shift_Del p.L137Wfs*70 0.15 TCGA-GL-A9DD-01 1 225267022 225267022 A G DNAH14 Silent p.K780K 0.17 TCGA-GL-A9DD-01 1 227174451 227174451 C G ADCK3 3'UTR 0.19 TCGA-GL-A9DD-01 1 29486974 29486974 G C SRSF4 Missense_Mutation p.L55V 0.15 deleterious(0) probably_damaging(0.989) TCGA-GL-A9DD-01 1 46654703 46654703 T C POMGNT1 Intron 0.29 TCGA-GL-A9DD-01 1 52991239 52991239 A C ZCCHC11 Missense_Mutation p.D238E 0.18 tolerated_low_confidence(0.27) benign(0.007) TCGA-GL-A9DD-01 1 55080373 55080373 T C FAM151A Missense_Mutation p.Q192R 0.19 tolerated(0.54) benign(0.012) TCGA-GL-A9DD-01 1 75669452 75669452 T A SLC44A5 3'Flank 0.17 TCGA-GL-A9DD-01 20 61527694 61527695 - T DIDO1 Frame_Shift_Ins p.I702Nfs*6 0.20 TCGA-GL-A9DD-01 21 34166443 34166443 G A C21orf62 Missense_Mutation p.T97M 0.22 deleterious(0) probably_damaging(0.983) TCGA-GL-A9DD-01 22 20099947 20099947 C A TRMT2A 3'UTR 0.33 TCGA-GL-A9DD-01 22 21990901 21990901 G C CCDC116 Missense_Mutation p.G462R 0.18 deleterious(0) probably_damaging(1) TCGA-GL-A9DD-01 2 100266104 100266104 G C AFF3 Missense_Mutation p.R415G 0.23 deleterious(0.04) benign(0.171) TCGA-GL-A9DD-01 2 131096793 131096793 G T CCDC115 Missense_Mutation p.A148D 0.11 deleterious(0) probably_damaging(1) TCGA-GL-A9DD-01 2 141641491 141641491 T A LRP1B Missense_Mutation p.N1355I 0.15 benign(0.018) TCGA-GL-A9DD-01 2 183989180 183989180 G T NUP35 5'UTR 0.27 TCGA-GL-A9DD-01 2 189916160 189916160 T A COL5A2 Silent p.G939G 0.22 TCGA-GL-A9DD-01 2 196915964 196915964 C T DNAH7 Missense_Mutation p.A30T 0.22 tolerated_low_confidence(0.2) benign(0) TCGA-GL-A9DD-01 2 198368007 198368007 T C HSPE1 3'UTR 0.27 TCGA-GL-A9DD-01 2 206110541 206110541 A T PARD3B Missense_Mutation p.K665I 0.23 deleterious(0.01) possibly_damaging(0.506) TCGA-GL-A9DD-01 2 211057576 211057576 A G ACADL Missense_Mutation p.V384A 0.15 deleterious(0) benign(0.113) TCGA-GL-A9DD-01 2 232081381 232081381 T C ARMC9 Missense_Mutation p.Y127H 0.23 tolerated(0.56) benign(0.005) TCGA-GL-A9DD-01 2 26587184 26587184 T C EPT1 Silent p.D24D 0.17 TCGA-GL-A9DD-01 2 38977271 38977271 T C SRSF7 Missense_Mutation p.S32G 0.14 tolerated(0.39) benign(0.042) TCGA-GL-A9DD-01 2 40657412 40657412 G A SLC8A1 Silent p.N3N 0.27 TCGA-GL-A9DD-01 2 7035978 7035978 G A RSAD2 Missense_Mutation p.E331K 0.19 tolerated(0.52) benign(0.003) TCGA-GL-A9DD-01 2 88474889 88474889 G A THNSL2 Silent p.T180T 0.15 TCGA-GL-A9DD-01 3 126270916 126270916 C - C3orf22 Frame_Shift_Del p.V47Sfs*60 0.20 TCGA-GL-A9DD-01 3 160967299 160967299 T C NMD3 Silent p.L421L 0.17 TCGA-GL-A9DD-01 3 183756708 183756709 - T HTR3D Frame_Shift_Ins p.L438Pfs*55 0.18 TCGA-GL-A9DD-01 3 183963295 183963295 G C ALG3 Silent p.T135T 0.29 TCGA-GL-A9DD-01 3 192126124 192126124 C A FGF12 5'UTR 0.15 TCGA-GL-A9DD-01 3 196613001 196613001 A T SENP5 Nonsense_Mutation p.K317* 0.36 TCGA-GL-A9DD-01 3 40523745 40523745 T A ZNF619 Missense_Mutation p.L68Q 0.29 tolerated_low_confidence(0.08) possibly_damaging(0.766) TCGA-GL-A9DD-01 3 78710202 78710202 C T ROBO1 Silent p.K766K 0.26 TCGA-GL-A9DD-01 4 1165650 1165650 A T SPON2 Silent p.S70S 0.23 TCGA-GL-A9DD-01 4 120190931 120190931 A G USP53 Silent p.L458L 0.10 TCGA-GL-A9DD-01 4 187629592 187629593 - A FAT1 Frame_Shift_Ins p.T464Yfs*10 0.22 TCGA-GL-A9DD-01 4 38800432 38800432 A - TLR1 Frame_Shift_Del p.F7Lfs*7 0.19 TCGA-GL-A9DD-01 4 6576972 6576972 C A MAN2B2 Missense_Mutation p.P12Q 0.22 tolerated(0.57) benign(0.003) TCGA-GL-A9DD-01 4 83748748 83748748 G T SEC31A Nonsense_Mutation p.S1022* 0.18 TCGA-GL-A9DD-01 4 86916509 86916510 - C ARHGAP24 Frame_Shift_Ins p.N569Qfs*21 0.11 TCGA-GL-A9DD-01 5 110448824 110448824 A T WDR36 Missense_Mutation p.I646F 0.22 deleterious(0) possibly_damaging(0.635) TCGA-GL-A9DD-01 5 140857767 140857767 T G PCDHGC3 Missense_Mutation p.L695R 0.20 deleterious(0) possibly_damaging(0.878) TCGA-GL-A9DD-01 5 175772284 175772294 GAGAAGCAGAT - SIMC1 Frame_Shift_Del p.E404* 0.16 TCGA-GL-A9DD-01 5 31526232 31526232 C A DROSHA Missense_Mutation p.D270Y 0.20 deleterious_low_confidence(0.03) benign(0.441) TCGA-GL-A9DD-01 5 76758982 76758982 A G WDR41 Silent p.L96L 0.18 TCGA-GL-A9DD-01 6 109954291 109954291 G T AK9 Silent p.I363I 0.31 TCGA-GL-A9DD-01 6 149944285 149944285 A T KATNA1 Missense_Mutation p.V152D 0.12 tolerated(0.63) benign(0.115) TCGA-GL-A9DD-01 6 151125741 151125744 TTAA G PLEKHG1 Splice_Site p.X261_splice 0.13 TCGA-GL-A9DD-01 6 24423666 24423666 T A MRS2 Intron 0.30 TCGA-GL-A9DD-01 6 36936732 36936732 A C MTCH1 Missense_Mutation p.S356A 0.23 tolerated(0.07) probably_damaging(0.987) TCGA-GL-A9DD-01 6 46604152 46604152 A C CYP39A1 Missense_Mutation p.C236G 0.17 tolerated(0.45) benign(0.007) TCGA-GL-A9DD-01 6 64574111 64574111 G - EYS Frame_Shift_Del p.P2399Hfs*48 0.15 TCGA-GL-A9DD-01 6 90405588 90405588 G T MDN1 Missense_Mutation p.S3169R 0.20 benign(0.003) TCGA-GL-A9DD-01 6 99283044 99283044 G A POU3F2 Missense_Mutation p.G99S 0.29 tolerated_low_confidence(0.1) possibly_damaging(0.746) TCGA-GL-A9DD-01 7 100844043 100844043 G A MOGAT3 Silent p.L31L 0.15 TCGA-GL-A9DD-01 7 105187490 105187490 G A RINT1 Missense_Mutation p.V217I 0.30 tolerated(0.24) benign(0.102) TCGA-GL-A9DD-01 7 117828344 117828344 G A NAA38 Missense_Mutation p.G29S 0.33 deleterious(0) probably_damaging(0.989) TCGA-GL-A9DD-01 7 138279340 138279340 T A SVOPL 3'Flank 0.39 TCGA-GL-A9DD-01 7 141720863 141720863 T A MGAM Missense_Mutation p.S180T 0.14 tolerated(0.23) benign(0.015) TCGA-GL-A9DD-01 7 148767517 148767517 A C ZNF786 Nonstop_Mutation p.*783Gext*9 0.36 TCGA-GL-A9DD-01 7 150554944 150554944 T C AOC1 Silent p.D462D 0.34 TCGA-GL-A9DD-01 7 151856014 151856014 C - KMT2C Frame_Shift_Del p.K3870Rfs*19 0.13 TCGA-GL-A9DD-01 7 5112759 5112759 G A RBAK-RBAKDN 3'UTR 0.19 TCGA-GL-A9DD-01 7 57187920 57187920 C G ZNF479 Missense_Mutation p.R401T 0.29 tolerated(0.15) possibly_damaging(0.535) TCGA-GL-A9DD-01 7 73953047 73953047 A T GTF2IRD1 Missense_Mutation p.K527N 0.16 deleterious(0.03) possibly_damaging(0.852) TCGA-GL-A9DD-01 8 133953675 133953675 C A TG Silent p.P1707P 0.20 TCGA-GL-A9DD-01 8 144999275 144999275 C T PLEC Missense_Mutation p.E1745K 0.21 unknown(0) TCGA-GL-A9DD-01 8 23012460 23012460 C A TNFRSF10D Missense_Mutation p.Q61H 0.17 tolerated(0.05) possibly_damaging(0.799) TCGA-GL-A9DD-01 9 103070843 103070843 A G TEX10 Missense_Mutation p.Y802H 0.21 tolerated(0.06) probably_damaging(0.976) TCGA-GL-A9DD-01 9 128347834 128347834 T C MAPKAP1 Missense_Mutation p.N224S 0.17 tolerated(0.31) benign(0.009) TCGA-GL-A9DD-01 9 131152180 131152180 C T URM1 3'UTR 0.42 TCGA-GL-A9DD-01 9 134394275 134394276 GG - POMT1 Frame_Shift_Del p.K497Afs*62 0.14 TCGA-GL-A9DD-01 9 136215842 136215842 G A RPL7A Silent p.E23E 0.17 TCGA-GL-A9DD-01 9 139292750 139292750 C A SNAPC4 Splice_Site p.X44_splice 0.25 TCGA-GL-A9DD-01 9 15472713 15472713 G T PSIP1 Missense_Mutation p.H298Q 0.10 tolerated(0.31) possibly_damaging(0.852) TCGA-GL-A9DD-01 9 8341183 8341183 A C PTPRD Missense_Mutation p.I1678S 0.22 deleterious(0) probably_damaging(1) TCGA-GL-A9DD-01 9 91926139 91926139 T G CKS2 5'UTR 0.16 TCGA-GL-A9DD-01 X 113961281 113961281 T G HTR2C 5'UTR 0.32 TCGA-GL-A9DD-01 X 19389154 19389154 A C MAP3K15 Missense_Mutation p.I1108S 0.40 deleterious(0) possibly_damaging(0.461) TCGA-GL-A9DE-01 10 104184908 104184908 G A CUEDC2 Missense_Mutation p.A13V 0.35 tolerated(0.26) benign(0.014) TCGA-GL-A9DE-01 10 105793812 105793812 T A COL17A1 Silent p.A1349A 0.37 TCGA-GL-A9DE-01 10 23622020 23622020 A G C10orf67 Silent p.L101L 0.45 TCGA-GL-A9DE-01 10 28906628 28906628 C G WAC Missense_Mutation p.H597D 0.43 tolerated(0.22) possibly_damaging(0.714) TCGA-GL-A9DE-01 10 327182 327182 A C DIP2C Missense_Mutation p.I1459S 0.47 deleterious(0) possibly_damaging(0.871) TCGA-GL-A9DE-01 10 46959998 46959998 G A SYT15 3'Flank 0.15 TCGA-GL-A9DE-01 10 73765519 73765519 C T CHST3 5'UTR 0.55 TCGA-GL-A9DE-01 11 118390700 118390700 C G KMT2A Missense_Mutation p.L3784V 0.57 possibly_damaging(0.817) TCGA-GL-A9DE-01 11 18333543 18333543 C A HPS5 Missense_Mutation p.W46L 0.42 deleterious(0) probably_damaging(1) TCGA-GL-A9DE-01 11 4144483 4144483 C T RRM1 Nonsense_Mutation p.Q397* 0.44 TCGA-GL-A9DE-01 11 45939414 45939414 C G PEX16 5'Flank 0.36 TCGA-GL-A9DE-01 11 62652107 62652107 G A SLC3A2 Missense_Mutation p.A357T 0.37 tolerated(0.13) possibly_damaging(0.8) TCGA-GL-A9DE-01 11 62652108 62652108 C T SLC3A2 Missense_Mutation p.A357V 0.34 tolerated(0.41) benign(0.125) TCGA-GL-A9DE-01 11 71720100 71720100 A G NUMA1 Silent p.H1657H 0.45 TCGA-GL-A9DE-01 11 71942228 71942228 C T INPPL1 Missense_Mutation p.R498C 0.44 deleterious(0) probably_damaging(0.98) TCGA-GL-A9DE-01 11 73471628 73471628 A T RAB6A Missense_Mutation p.F18Y 0.40 deleterious(0) benign(0.047) TCGA-GL-A9DE-01 11 73850650 73850650 C G C2CD3 Missense_Mutation p.R236T 0.28 deleterious(0) possibly_damaging(0.897) TCGA-GL-A9DE-01 11 94277973 94277973 A T FUT4 Missense_Mutation p.D225V 0.40 deleterious(0) probably_damaging(0.996) TCGA-GL-A9DE-01 12 102043137 102043137 G C MYBPC1 Missense_Mutation p.K407N 0.39 tolerated(0.36) possibly_damaging(0.906) TCGA-GL-A9DE-01 12 125432196 125432196 G T DHX37 3'UTR 0.17 TCGA-GL-A9DE-01 12 39836908 39836908 C T KIF21A 5'Flank 0.44 TCGA-GL-A9DE-01 12 50047553 50047554 - TT FMNL3 Frame_Shift_Ins p.N392Kfs*3 0.26 TCGA-GL-A9DE-01 12 65078565 65078565 A C RASSF3 Splice_Site p.X38_splice 0.46 TCGA-GL-A9DE-01 12 72176413 72176413 G A RAB21 Silent p.E170E 0.44 TCGA-GL-A9DE-01 12 7890038 7890038 G C CLEC4C Missense_Mutation p.T123S 0.36 tolerated(0.24) benign(0.084) TCGA-GL-A9DE-01 12 89917333 89917333 C T GALNT4 Missense_Mutation p.E332K 0.35 deleterious(0.01) possibly_damaging(0.627) TCGA-GL-A9DE-01 13 25744451 25744451 A T AMER2 Missense_Mutation p.L436Q 0.55 deleterious(0) probably_damaging(0.995) TCGA-GL-A9DE-01 13 32705963 32705963 C T FRY Missense_Mutation p.L291F 0.39 tolerated(1) benign(0.002) TCGA-GL-A9DE-01 14 31142532 31142533 - AA SCFD1 Frame_Shift_Ins p.R357Nfs*9 0.28 TCGA-GL-A9DE-01 14 60074162 60074162 A G RTN1 Missense_Mutation p.F605S 0.48 deleterious(0) probably_damaging(1) TCGA-GL-A9DE-01 14 69256832 69256832 G T ZFP36L1 Silent p.R145R 0.39 TCGA-GL-A9DE-01 14 74953056 74953057 TG - NPC2 Nonsense_Mutation p.Y55* 0.29 TCGA-GL-A9DE-01 14 95030170 95030170 C A SERPINA4 Silent p.V117V 0.44 TCGA-GL-A9DE-01 15 28459417 28459417 C G HERC2 Missense_Mutation p.E2120D 0.49 benign(0.009) TCGA-GL-A9DE-01 15 51792075 51792075 C T DMXL2 Missense_Mutation p.E1116K 0.41 tolerated(0.09) possibly_damaging(0.482) TCGA-GL-A9DE-01 15 72581548 72581548 G C CELF6 Missense_Mutation p.L321V 0.44 tolerated(0.75) benign(0.044) TCGA-GL-A9DE-01 15 90349809 90349809 G A ANPEP Silent p.A2A 0.13 TCGA-GL-A9DE-01 16 57957180 57957180 G A CNGB1 Missense_Mutation p.T547I 0.42 tolerated(0.09) benign(0.231) TCGA-GL-A9DE-01 16 842327 842327 G A CHTF18 Missense_Mutation p.E436K 0.15 deleterious(0.02) probably_damaging(1) TCGA-GL-A9DE-01 16 9210571 9210571 A G C16orf72 Silent p.P210P 0.43 TCGA-GL-A9DE-01 17 29086552 29086552 A T SUZ12P RNA 0.37 TCGA-GL-A9DE-01 17 29483033 29483033 T G NF1 Missense_Mutation p.H31Q 0.42 tolerated(0.55) probably_damaging(0.917) TCGA-GL-A9DE-01 17 33904058 33904062 TCCTG CCCA PEX12 Frame_Shift_Del p.R226Gfs*7 0.39 TCGA-GL-A9DE-01 17 38230674 38230674 G - THRA 5'UTR 0.09 TCGA-GL-A9DE-01 17 39471747 39471747 G A KRTAP17-1 Silent p.C52C 0.45 TCGA-GL-A9DE-01 17 43003847 43003847 C T KIF18B Missense_Mutation p.R796H 0.28 tolerated(0.35) benign(0.033) TCGA-GL-A9DE-01 17 56619188 56619188 C T C17orf47 Silent p.S567S 0.06 TCGA-GL-A9DE-01 17 60814763 60814763 G C MARCH10 Intron 0.17 TCGA-GL-A9DE-01 17 7907255 7907255 C T GUCY2D Silent p.T269T 0.19 TCGA-GL-A9DE-01 17 80047168 80047168 G A FASN Silent p.F686F 0.54 TCGA-GL-A9DE-01 18 9535920 9535920 G A RALBP1 Silent p.K651K 0.38 TCGA-GL-A9DE-01 18 9570630 9570630 A T PPP4R1 Silent p.T366T 0.56 TCGA-GL-A9DE-01 19 12691823 12691824 GG - ZNF490 Frame_Shift_Del p.T357Rfs*8 0.29 TCGA-GL-A9DE-01 19 12878236 12878236 G A HOOK2 Missense_Mutation p.A449V 0.39 deleterious(0.02) possibly_damaging(0.604) TCGA-GL-A9DE-01 19 17270210 17270210 G A MYO9B Silent p.K445K 0.40 TCGA-GL-A9DE-01 19 2210838 2210838 G T DOT1L Silent p.A445A 0.44 TCGA-GL-A9DE-01 19 42583233 42583233 C T ZNF574 Missense_Mutation p.P159S 0.36 tolerated(0.57) possibly_damaging(0.857) TCGA-GL-A9DE-01 19 48197404 48197404 C - GLTSCR1 Frame_Shift_Del p.S774Lfs*68 0.23 TCGA-GL-A9DE-01 19 53886115 53886115 G A ZNF525 3'UTR 0.17 TCGA-GL-A9DE-01 19 55718205 55718205 A C PTPRH Silent p.T68T 0.37 TCGA-GL-A9DE-01 19 57665813 57665813 A G DUXA Silent p.S194S 0.39 TCGA-GL-A9DE-01 19 581506 581506 C - BSG Frame_Shift_Del p.L329Wfs*37 0.26 TCGA-GL-A9DE-01 19 59056863 59056863 A G TRIM28 Missense_Mutation p.S138G 0.40 tolerated(0.51) benign(0.001) TCGA-GL-A9DE-01 19 9011358 9011358 G T MUC16 Missense_Mutation p.P12959T 0.23 probably_damaging(0.933) TCGA-GL-A9DE-01 1 117122158 117122158 G A IGSF3 Missense_Mutation p.R1084W 0.13 deleterious(0.01) probably_damaging(0.982) TCGA-GL-A9DE-01 1 145457964 145457964 G A POLR3GL Missense_Mutation p.P99L 0.38 tolerated(0.13) benign(0.368) TCGA-GL-A9DE-01 1 150778422 150778422 G C CTSK Missense_Mutation p.T105S 0.41 tolerated(0.99) benign(0.126) TCGA-GL-A9DE-01 1 152081020 152081020 C T TCHH Missense_Mutation p.R1558H 0.28 unknown(0) TCGA-GL-A9DE-01 1 152128079 152128079 T A RPTN Missense_Mutation p.Y499F 0.43 deleterious(0.01) possibly_damaging(0.898) TCGA-GL-A9DE-01 1 153634795 153634795 T C ILF2 3'UTR 0.28 TCGA-GL-A9DE-01 1 15428105 15428105 G A KAZN Silent p.L538L 0.37 TCGA-GL-A9DE-01 1 16261504 16261504 C T SPEN Silent p.V2923V 0.40 TCGA-GL-A9DE-01 1 235969849 235969849 C T LYST Missense_Mutation p.A863T 0.39 tolerated_low_confidence(0.11) benign(0.108) TCGA-GL-A9DE-01 1 247150413 247150413 T A ZNF695 Missense_Mutation p.E468D 0.48 deleterious(0.05) possibly_damaging(0.456) TCGA-GL-A9DE-01 1 247150414 247150414 T A ZNF695 Missense_Mutation p.E468V 0.48 deleterious(0.02) probably_damaging(0.923) TCGA-GL-A9DE-01 1 29475201 29475201 G C SRSF4 Silent p.S402S 0.33 TCGA-GL-A9DE-01 1 46206791 46206792 - CC IPP Frame_Shift_Ins p.V169Gfs*16 0.29 TCGA-GL-A9DE-01 1 47144277 47144277 C T EFCAB14 Silent p.Q448Q 0.45 TCGA-GL-A9DE-01 1 48865170 48865170 A C SPATA6 Missense_Mutation p.I211M 0.38 deleterious(0.01) probably_damaging(0.984) TCGA-GL-A9DE-01 1 64698316 64698316 A T UBE2U Missense_Mutation p.E193D 0.39 tolerated(0.19) benign(0.035) TCGA-GL-A9DE-01 1 65107535 65107535 G T CACHD1 Missense_Mutation p.G296C 0.15 deleterious(0) probably_damaging(1) TCGA-GL-A9DE-01 20 2618130 2618130 T C TMC2 Missense_Mutation p.V799A 0.07 tolerated(0.33) benign(0.003) TCGA-GL-A9DE-01 20 49354458 49354458 A G PARD6B Missense_Mutation p.Y44C 0.38 deleterious(0.02) benign(0.315) TCGA-GL-A9DE-01 20 50217801 50217801 C T ATP9A Silent p.K1031K 0.05 TCGA-GL-A9DE-01 20 60589606 60589606 T A TAF4 Silent p.V506V 0.14 TCGA-GL-A9DE-01 22 21385638 21385638 G C SLC7A4 Missense_Mutation p.T155S 0.32 tolerated(0.43) benign(0.013) TCGA-GL-A9DE-01 22 38981867 38981867 G A FAM227A Intron 0.29 TCGA-GL-A9DE-01 22 50722099 50722099 G A PLXNB2 Silent p.D834D 0.45 TCGA-GL-A9DE-01 2 153551067 153551069 GCT - PRPF40A In_Frame_Del p.Q95del 0.11 TCGA-GL-A9DE-01 2 169939934 169939934 A C DHRS9 Missense_Mutation p.N137H 0.12 deleterious(0) probably_damaging(1) TCGA-GL-A9DE-01 2 189862443 189862443 A G COL3A1 Silent p.K629K 0.38 TCGA-GL-A9DE-01 2 224824598 224824598 A G MRPL44 Missense_Mutation p.E176G 0.34 tolerated(0.07) benign(0.099) TCGA-GL-A9DE-01 2 225266657 225266657 G A FAM124B 5'UTR 0.55 TCGA-GL-A9DE-01 2 237103670 237103670 C G ASB18 Missense_Mutation p.A416P 0.42 deleterious(0.01) possibly_damaging(0.866) TCGA-GL-A9DE-01 2 237240213 237240213 T C IQCA1 Missense_Mutation p.N721S 0.16 tolerated(0.22) benign(0.007) TCGA-GL-A9DE-01 2 30966353 30966353 C G CAPN13 Missense_Mutation p.M447I 0.45 deleterious(0.02) benign(0.001) TCGA-GL-A9DE-01 2 33525581 33525581 C A LTBP1 Missense_Mutation p.S1100Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-GL-A9DE-01 2 9563933 9563933 C G CPSF3 Missense_Mutation p.Q11E 0.40 tolerated(1) benign(0) TCGA-GL-A9DE-01 3 128181520 128181520 T C DNAJB8 Missense_Mutation p.N190S 0.83 deleterious(0) probably_damaging(0.989) TCGA-GL-A9DE-01 3 129390024 129390024 A T TMCC1 Silent p.S220S 0.08 TCGA-GL-A9DE-01 3 42917406 42917406 G A CYP8B1 5'UTR 0.15 TCGA-GL-A9DE-01 3 47058731 47058732 AC T SETD2 Frame_Shift_Del p.V2516Ifs*2 0.45 TCGA-GL-A9DE-01 3 66431274 66431274 G - LRIG1 Frame_Shift_Del p.R928Gfs*77 0.27 TCGA-GL-A9DE-01 4 123226024 123226024 A C KIAA1109 Missense_Mutation p.E3186D 0.42 possibly_damaging(0.868) TCGA-GL-A9DE-01 4 169099042 169099042 T C ANXA10 Missense_Mutation p.V179A 0.17 tolerated(0.76) possibly_damaging(0.771) TCGA-GL-A9DE-01 4 17806031 17806031 G T DCAF16 5'UTR 0.38 TCGA-GL-A9DE-01 4 48038211 48038211 T C NIPAL1 3'UTR 0.37 TCGA-GL-A9DE-01 4 5812077 5812077 A C EVC Silent p.R932R 0.42 TCGA-GL-A9DE-01 4 77969741 77969741 A G CCNI Silent p.P255P 0.38 TCGA-GL-A9DE-01 4 87671752 87671752 T C PTPN13 Missense_Mutation p.V927A 0.43 tolerated(0.19) benign(0.011) TCGA-GL-A9DE-01 5 112399744 112399744 G C MCC Missense_Mutation p.A717G 0.44 tolerated(0.17) possibly_damaging(0.761) TCGA-GL-A9DE-01 5 121786598 121786598 G T SNCAIP Nonsense_Mutation p.E686* 0.44 TCGA-GL-A9DE-01 5 137089946 137089946 A T HNRNPA0 5'UTR 0.39 TCGA-GL-A9DE-01 5 140554265 140554265 G A PCDHB7 Missense_Mutation p.V617M 0.09 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-GL-A9DE-01 5 141354465 141354465 C A RNF14 Missense_Mutation p.P84Q 0.55 deleterious(0) probably_damaging(1) TCGA-GL-A9DE-01 5 154395330 154395330 C - KIF4B Frame_Shift_Del p.Q638Kfs*5 0.42 TCGA-GL-A9DE-01 5 176314511 176314511 C T HK3 Missense_Mutation p.G514E 0.45 tolerated(0.34) possibly_damaging(0.561) TCGA-GL-A9DE-01 6 127767703 127767703 A C KIAA0408 Missense_Mutation p.N587K 0.40 tolerated(0.85) benign(0.037) TCGA-GL-A9DE-01 6 1313368 1313368 G T FOXQ1 Silent p.A143A 0.39 TCGA-GL-A9DE-01 6 151790358 151790358 C G C6orf211 3'UTR 0.38 TCGA-GL-A9DE-01 6 16147030 16147030 T C MYLIP 3'UTR 0.59 TCGA-GL-A9DE-01 6 26638215 26638215 T C ZNF322 Silent p.E189E 0.14 TCGA-GL-A9DE-01 6 7395375 7395375 A G RIOK1 Silent p.L122L 0.37 TCGA-GL-A9DE-01 7 150499366 150499366 T C TMEM176A Missense_Mutation p.Y80H 0.42 tolerated(0.4) possibly_damaging(0.879) TCGA-GL-A9DE-01 7 17338713 17338713 G A AHR 5'UTR 0.74 TCGA-GL-A9DE-01 7 21856163 21856163 G T DNAH11 Nonsense_Mutation p.E3478* 0.12 TCGA-GL-A9DE-01 7 23300201 23300201 A G GPNMB Missense_Mutation p.Y276C 0.42 deleterious(0.03) possibly_damaging(0.796) TCGA-GL-A9DE-01 7 72883924 72883924 T C BAZ1B Missense_Mutation p.H930R 0.35 tolerated(0.07) probably_damaging(0.997) TCGA-GL-A9DE-01 7 82544242 82544242 C A PCLO Missense_Mutation p.V4354L 0.41 unknown(0) TCGA-GL-A9DE-01 7 87369132 87369132 G A RUNDC3B Missense_Mutation p.V179I 0.19 tolerated(0.13) benign(0.023) TCGA-GL-A9DE-01 8 143694311 143694311 C T ARC 3'UTR 0.32 TCGA-GL-A9DE-01 8 145947779 145947779 T C ZNF251 Silent p.E422E 0.20 TCGA-GL-A9DE-01 8 195728 195728 T - ZNF596 Frame_Shift_Del p.R295Efs*8 0.24 TCGA-GL-A9DE-01 8 54628573 54628573 C A ATP6V1H Missense_Mutation p.G468V 0.34 deleterious(0) benign(0.434) TCGA-GL-A9DE-01 8 54628574 54628574 C G ATP6V1H Missense_Mutation p.G468R 0.34 deleterious(0) possibly_damaging(0.691) TCGA-GL-A9DE-01 8 82751914 82751914 C G SNX16 Missense_Mutation p.W103S 0.42 tolerated(0.17) benign(0.007) TCGA-GL-A9DE-01 8 95837281 95837281 C T INTS8 Silent p.D97D 0.28 TCGA-GL-A9DE-01 9 123453711 123453711 C A MEGF9 Intron 0.45 TCGA-GL-A9DE-01 9 127622502 127622502 A G RPL35 Missense_Mutation p.I61T 0.38 tolerated(0.06) possibly_damaging(0.826) TCGA-GL-A9DE-01 9 133901739 133901739 C A LAMC3 Silent p.I147I 0.38 TCGA-GL-A9DE-01 9 35449650 35449650 T C ATP8B5P RNA 0.43 TCGA-GL-A9DE-01 X 155254719 155254719 G T WASH6P RNA 0.26 TCGA-GL-A9DE-01 X 2407032 2407032 A C ZBED1 Missense_Mutation p.S577A 0.65 tolerated(0.47) benign(0.129) TCGA-GL-A9DE-01 X 35944178 35944178 C T CXorf22 Silent p.G98G 0.03 TCGA-GL-A9DE-01 X 41555847 41555847 T A GPR34 Missense_Mutation p.C321S 0.75 deleterious(0) probably_damaging(0.999) TCGA-HE-7128-01 11 47604000 47604000 C T NDUFS3 Missense_Mutation p.P203S 0.22 deleterious(0) probably_damaging(1) TCGA-HE-7128-01 11 4928976 4928976 T - OR51A7 Frame_Shift_Del p.H127Tfs*4 0.13 TCGA-HE-7128-01 11 73020521 73020521 G T ARHGEF17 Missense_Mutation p.D280Y 0.26 deleterious_low_confidence(0) possibly_damaging(0.85) TCGA-HE-7128-01 12 101684601 101684601 A G UTP20 Missense_Mutation p.M276V 0.30 tolerated(0.13) benign(0.018) TCGA-HE-7128-01 12 112892482 112892482 C A PTPN11 Missense_Mutation p.Q214K 0.13 deleterious(0.05) benign(0.097) TCGA-HE-7128-01 12 123463804 123463804 C G OGFOD2 Missense_Mutation p.R262G 0.19 tolerated(0.06) benign(0.036) TCGA-HE-7128-01 12 49446075 49446075 G A KMT2D Missense_Mutation p.A464V 0.26 unknown(0) TCGA-HE-7128-01 14 93730186 93730186 A C BTBD7 Missense_Mutation p.F439C 0.21 deleterious(0) possibly_damaging(0.87) TCGA-HE-7128-01 15 50528292 50528292 G A SLC27A2 Silent p.%3D 0.18 TCGA-HE-7128-01 17 65732103 65732103 G - NOL11 Frame_Shift_Del p.G340Vfs*21 0.12 TCGA-HE-7128-01 17 8731475 8731475 G A PIK3R6 Missense_Mutation p.P449L 0.11 tolerated(0.18) possibly_damaging(0.843) TCGA-HE-7128-01 18 43440155 43440155 A G EPG5 Missense_Mutation p.L2308P 0.18 deleterious(0) probably_damaging(0.991) TCGA-HE-7128-01 19 1257046 1257048 GCT - MIDN In_Frame_Del p.L395del 0.30 TCGA-HE-7128-01 19 14263148 14263148 A G LPHN1 Missense_Mutation p.S1213P 0.11 tolerated(1) benign(0.001) TCGA-HE-7128-01 19 16003152 16003153 - ATAT CYP4F2 Frame_Shift_Ins p.M164Ifs*7 0.18 TCGA-HE-7128-01 19 7965830 7965830 T C LRRC8E 3'UTR 0.23 TCGA-HE-7128-01 1 15956850 15956850 C A DDI2 Missense_Mutation p.A100D 0.21 tolerated(0.13) benign(0.394) TCGA-HE-7128-01 20 17950811 17950811 C A MGME1 Silent p.I103I 0.13 TCGA-HE-7128-01 20 35769661 35769661 A - MROH8 Frame_Shift_Del p.F491Lfs*4 0.32 TCGA-HE-7128-01 20 62070959 62070959 G A KCNQ2 Silent p.L307L 0.39 TCGA-HE-7128-01 22 41621916 41621916 A G L3MBTL2 Missense_Mutation p.K492R 0.09 tolerated(0.74) benign(0.012) TCGA-HE-7128-01 2 170557930 170557930 A G PHOSPHO2 Missense_Mutation p.N150S 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-HE-7128-01 2 179368700 179368700 C A PLEKHA3 3'UTR 0.29 TCGA-HE-7128-01 2 231943417 231943417 A - PSMD1 Frame_Shift_Del p.N373Tfs*21 0.23 TCGA-HE-7128-01 2 240969643 240969643 G C OR6B2 Missense_Mutation p.F68L 0.14 deleterious(0.05) benign(0.003) TCGA-HE-7128-01 2 30968591 30968591 G A CAPN13 Nonsense_Mutation p.Q416* 0.14 TCGA-HE-7128-01 2 50149203 50149203 C G NRXN1 Missense_Mutation p.S1508T 0.14 tolerated(0.41) possibly_damaging(0.453) TCGA-HE-7128-01 2 55523606 55523606 T C CCDC88A Missense_Mutation p.S1626G 0.29 tolerated(0.44) probably_damaging(0.995) TCGA-HE-7128-01 2 62067675 62067675 A T FAM161A Missense_Mutation p.M155K 0.11 tolerated(0.3) benign(0.283) TCGA-HE-7128-01 2 68368907 68368907 G T WDR92 Missense_Mutation p.P146T 0.15 tolerated(0.27) benign(0.002) TCGA-HE-7128-01 2 85770091 85770091 A T MAT2A Missense_Mutation p.K340M 0.19 tolerated(0.13) benign(0.014) TCGA-HE-7128-01 3 108324275 108324275 T - DZIP3 Frame_Shift_Del p.F9Lfs*2 0.21 TCGA-HE-7128-01 3 185241864 185241865 AA - LIPH Frame_Shift_Del p.L238Gfs*7 0.29 TCGA-HE-7128-01 4 149075914 149075914 G C NR3C2 Missense_Mutation p.S718W 0.17 deleterious(0) possibly_damaging(0.854) TCGA-HE-7128-01 4 83839493 83839493 G A THAP9 Missense_Mutation p.D710N 0.25 tolerated(0.1) benign(0.075) TCGA-HE-7128-01 5 65466769 65466769 C T SREK1 Missense_Mutation p.S493F 0.26 deleterious_low_confidence(0) unknown(0) TCGA-HE-7128-01 6 116429548 116429548 T A NT5DC1 Missense_Mutation p.D69E 0.14 deleterious(0) probably_damaging(0.992) TCGA-HE-7128-01 6 134495704 134495704 T C SGK1 Missense_Mutation p.M128V 0.12 tolerated(0.16) benign(0.032) TCGA-HE-7128-01 7 104748161 104748161 A T KMT2E Missense_Mutation p.D1086V 0.33 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-HE-7128-01 7 138822639 138822639 T C TTC26 Missense_Mutation p.I63T 0.07 tolerated(0.1) benign(0.035) TCGA-HE-7128-01 8 41467379 41467379 C T AGPAT6 Silent p.S147S 0.24 TCGA-HE-7128-01 9 136333115 136333115 G A CACFD1 Silent p.T131T 0.29 TCGA-HE-7128-01 9 4706079 4706079 A G CDC37L1 Silent p.E327E 0.11 TCGA-HE-7128-01 9 95148550 95148550 A - OGN Frame_Shift_Del p.L220Wfs*19 0.35 TCGA-HE-7128-01 X 142605248 142605248 G A SPANXN3 5'UTR 0.47 TCGA-HE-7128-01 X 31152282 31152282 C G DMD Missense_Mutation p.D3651H 0.29 probably_damaging(0.934) TCGA-HE-7129-01 10 55568839 55568839 T A PCDH15 Missense_Mutation p.K591N 0.46 deleterious_low_confidence(0) unknown(0) TCGA-HE-7129-01 10 75898090 75898090 T C AP3M1 Silent p.L16L 0.51 TCGA-HE-7129-01 11 1098668 1098668 G A MUC2 Silent p.V2346V 0.30 TCGA-HE-7129-01 11 117375681 117375681 C T DSCAML1 Missense_Mutation p.D774N 0.44 deleterious(0.01) benign(0.034) TCGA-HE-7129-01 11 55861472 55861472 C G OR8I2 Missense_Mutation p.A230G 0.28 tolerated(0.12) benign(0.353) TCGA-HE-7129-01 11 57076186 57076186 C T TNKS1BP1 Silent p.G1333G 0.40 TCGA-HE-7129-01 12 124856857 124856857 C A NCOR2 Missense_Mutation p.G840W 0.12 unknown(0) TCGA-HE-7129-01 12 50571511 50571511 C G LIMA1 Missense_Mutation p.G540A 0.45 tolerated(0.12) benign(0.126) TCGA-HE-7129-01 13 113964011 113964011 C T LAMP1 Silent p.S79S 0.55 TCGA-HE-7129-01 14 35242930 35242930 A G BAZ1A Silent p.V1000V 0.54 TCGA-HE-7129-01 14 58827698 58827698 C - ARID4A Frame_Shift_Del p.S673* 0.40 TCGA-HE-7129-01 14 64746749 64746749 C G ESR2 Missense_Mutation p.G162A 0.42 deleterious(0) probably_damaging(1) TCGA-HE-7129-01 16 19548870 19548870 T A CCP110 Missense_Mutation p.F627I 0.39 tolerated(0.11) benign(0.024) TCGA-HE-7129-01 16 24826534 24826534 G A TNRC6A Missense_Mutation p.S1580N 0.27 deleterious(0.03) possibly_damaging(0.843) TCGA-HE-7129-01 16 58585134 58585134 T C CNOT1 Missense_Mutation p.T1082A 0.63 deleterious(0.05) benign(0.046) TCGA-HE-7129-01 17 28525539 28525565 TAATAATACGCTATTGGGAAGAAAATA - SLC6A4 Splice_Site p.X607_splice 0.21 TCGA-HE-7129-01 17 28601215 28601215 T C BLMH Missense_Mutation p.I216V 0.17 tolerated(0.94) benign(0.001) TCGA-HE-7129-01 17 38182477 38182477 C T MED24 Silent p.S639S 0.23 TCGA-HE-7129-01 17 45369560 45369560 C T ITGB3 Missense_Mutation p.S439F 0.63 deleterious(0.03) probably_damaging(0.964) TCGA-HE-7129-01 17 4837101 4837101 C T GP1BA Missense_Mutation p.T401I 0.25 tolerated(0.14) unknown(0) TCGA-HE-7129-01 17 56540550 56540550 C G HSF5 Missense_Mutation p.V379L 0.30 tolerated(0.1) benign(0.025) TCGA-HE-7129-01 17 56663339 56663339 G C TEX14 Missense_Mutation p.P971A 0.27 tolerated(0.5) benign(0.006) TCGA-HE-7129-01 17 60501296 60501296 A G METTL2A Silent p.A11A 0.33 TCGA-HE-7129-01 17 61511913 61511913 G A CYB561 Silent p.N202N 0.67 TCGA-HE-7129-01 17 67303077 67303077 G A ABCA5 Missense_Mutation p.L193F 0.33 deleterious(0.05) benign(0.005) TCGA-HE-7129-01 17 79913365 79913365 G A NOTUM Silent p.N348N 0.35 TCGA-HE-7129-01 17 8077387 8077387 T G TMEM107 3'UTR 0.59 TCGA-HE-7129-01 1 14068533 14068533 G T PRDM2 Missense_Mutation p.D89Y 0.51 probably_damaging(1) TCGA-HE-7129-01 1 156818724 156818724 G A INSRR Silent p.Y520Y 0.38 TCGA-HE-7129-01 1 229577202 229577202 T G NUP133 3'UTR 0.29 TCGA-HE-7129-01 20 19955386 19955386 C T RIN2 Silent p.S288S 0.48 TCGA-HE-7129-01 22 36206007 36206007 A G RBFOX2 Silent p.P94P 0.43 TCGA-HE-7129-01 2 220099828 220099828 G T ANKZF1 Missense_Mutation p.W495C 0.40 deleterious(0.03) benign(0.014) TCGA-HE-7129-01 2 38978383 38978383 G A SRSF7 Missense_Mutation p.R6W 0.40 deleterious_low_confidence(0.02) probably_damaging(0.96) TCGA-HE-7129-01 2 38978384 38978384 C A SRSF7 Silent p.G5G 0.38 TCGA-HE-7129-01 2 99413866 99413867 GT - KIAA1211L Frame_Shift_Del p.R851Dfs*5 0.38 TCGA-HE-7129-01 3 128292497 128292497 C T C3orf27 Missense_Mutation p.V26I 0.18 benign(0.208) TCGA-HE-7129-01 3 134323200 134323200 C A KY Nonsense_Mutation p.E403* 0.72 TCGA-HE-7129-01 3 17051783 17051783 G T PLCL2 Missense_Mutation p.L189F 0.32 tolerated(0.09) possibly_damaging(0.786) TCGA-HE-7129-01 3 184603940 184603940 C T VPS8 Nonsense_Mutation p.R593* 0.09 TCGA-HE-7129-01 4 155256161 155256161 T G DCHS2 Missense_Mutation p.I359L 0.52 tolerated(0.18) benign(0.019) TCGA-HE-7129-01 5 177632984 177632984 G A HNRNPAB Silent p.L117L 0.52 TCGA-HE-7129-01 6 13800602 13800602 C T MCUR1 Missense_Mutation p.E252K 0.36 deleterious(0.05) possibly_damaging(0.495) TCGA-HE-7129-01 6 52878690 52878690 G C ICK Missense_Mutation p.L308V 0.53 tolerated(0.39) benign(0.032) TCGA-HE-7129-01 7 150878302 150878302 C G ASB10 Silent p.L276L 0.24 TCGA-HE-7129-01 7 45112359 45112359 C T CCM2 Silent p.T281T 0.24 TCGA-HE-7129-01 7 95221864 95221872 CCAATGTGG - PDK4 In_Frame_Del p.S189_G192delinsR 0.58 TCGA-HE-7129-01 7 99621201 99621201 A G ZKSCAN1 Silent p.V24V 0.24 TCGA-HE-7129-01 8 134225321 134225321 C T WISP1 Missense_Mutation p.P95L 0.49 tolerated(0.08) benign(0.309) TCGA-HE-7129-01 9 117047026 117047026 C G COL27A1 Missense_Mutation p.P1319R 0.37 unknown(0) TCGA-HE-7129-01 9 140099503 140099503 A T TMEM203 Missense_Mutation p.F122I 0.54 deleterious(0) probably_damaging(0.981) TCGA-HE-7129-01 X 151302921 151302921 A G MAGEA10 3'UTR 0.23 TCGA-HE-7129-01 X 153609241 153609241 G - EMD Splice_Site p.X151_splice 0.51 TCGA-HE-7130-01 10 105215149 105215149 G A CALHM1 Missense_Mutation p.T304M 0.35 tolerated(0.08) benign(0.006) TCGA-HE-7130-01 10 116734920 116734920 A G TRUB1 Missense_Mutation p.T278A 0.22 deleterious(0.01) probably_damaging(0.96) TCGA-HE-7130-01 10 129910532 129910532 C T MKI67 Missense_Mutation p.E612K 0.14 deleterious(0.01) possibly_damaging(0.628) TCGA-HE-7130-01 10 134648258 134648258 C T TTC40 Missense_Mutation p.E2256K 0.18 tolerated(0.42) benign(0.005) TCGA-HE-7130-01 10 135209677 135209677 C T RP11-108K14.8 Missense_Mutation p.S68L 0.06 deleterious(0) possibly_damaging(0.486) TCGA-HE-7130-01 10 15256140 15256140 C T FAM171A1 Missense_Mutation p.D483N 0.10 tolerated(0.26) benign(0.006) TCGA-HE-7130-01 10 37451603 37451603 G A ANKRD30A Missense_Mutation p.E587K 0.21 tolerated(1) benign(0.027) TCGA-HE-7130-01 10 45472882 45472882 G A C10orf10 Silent p.L199L 0.24 TCGA-HE-7130-01 10 61830133 61830133 G A ANK3 Silent p.F3502F 0.23 TCGA-HE-7130-01 10 61830689 61830689 G C ANK3 Nonsense_Mutation p.S3317* 0.27 TCGA-HE-7130-01 10 62553795 62553795 C G CDK1 3'UTR 0.27 TCGA-HE-7130-01 10 72360284 72360284 G A PRF1 Silent p.I125I 0.16 TCGA-HE-7130-01 10 73765714 73765714 C G CHST3 Missense_Mutation p.I38M 0.06 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HE-7130-01 10 85956359 85956359 G A CDHR1 Missense_Mutation p.D84N 0.60 tolerated(0.12) benign(0.268) TCGA-HE-7130-01 11 102080284 102080284 C G YAP1 Missense_Mutation p.P341A 0.53 tolerated(0.06) benign(0.164) TCGA-HE-7130-01 11 102098224 102098224 G C YAP1 Missense_Mutation p.E396D 0.27 deleterious(0.01) probably_damaging(0.926) TCGA-HE-7130-01 11 113856896 113856896 A G HTR3A Missense_Mutation p.Y241C 0.62 tolerated(0.12) probably_damaging(0.959) TCGA-HE-7130-01 11 117097976 117097976 C A PCSK7 Silent p.V222V 0.30 TCGA-HE-7130-01 11 14501121 14501121 G C COPB1 Missense_Mutation p.S451C 0.74 deleterious(0) possibly_damaging(0.759) TCGA-HE-7130-01 11 36614896 36614896 C T RAG2 Missense_Mutation p.G275S 0.47 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 11 4936273 4936273 G A OR51G2 Silent p.V207V 0.42 TCGA-HE-7130-01 11 56468116 56468116 A G OR9G1 Missense_Mutation p.I85V 0.13 tolerated(0.5) benign(0.003) TCGA-HE-7130-01 11 58295114 58295114 C T LPXN Missense_Mutation p.R330Q 0.14 tolerated(0.31) benign(0.154) TCGA-HE-7130-01 11 59271133 59271133 C G OR4D11 Missense_Mutation p.L29V 0.06 tolerated(1) benign(0.012) TCGA-HE-7130-01 11 68197137 68197137 C T LRP5 Silent p.L1244L 0.04 TCGA-HE-7130-01 11 77377909 77377909 G A RSF1 3'UTR 0.40 TCGA-HE-7130-01 11 82444012 82444012 C T FAM181B Missense_Mutation p.D254N 0.44 deleterious(0.01) probably_damaging(0.963) TCGA-HE-7130-01 11 85375684 85375684 G A CREBZF Missense_Mutation p.S79F 0.49 deleterious_low_confidence(0.02) possibly_damaging(0.451) TCGA-HE-7130-01 11 9451343 9451343 G A IPO7 Missense_Mutation p.E572K 0.50 deleterious(0.05) benign(0.271) TCGA-HE-7130-01 11 95621408 95621408 G A MTMR2 Missense_Mutation p.S33L 0.39 tolerated(0.07) benign(0.005) TCGA-HE-7130-01 12 121648006 121648006 C T P2RX4 Silent p.F13F 0.38 TCGA-HE-7130-01 12 30906661 30906661 C G CAPRIN2 Missense_Mutation p.E13Q 0.09 deleterious_low_confidence(0.03) benign(0.012) TCGA-HE-7130-01 12 40422219 40422219 C T SLC2A13 Missense_Mutation p.G270E 0.20 deleterious(0.05) probably_damaging(0.919) TCGA-HE-7130-01 12 49231830 49231830 C T DDX23 Missense_Mutation p.E172K 0.40 tolerated(0.89) benign(0.357) TCGA-HE-7130-01 12 49854778 49854778 G C SPATS2 5'UTR 0.38 TCGA-HE-7130-01 12 49916614 49916614 G C SPATS2 Missense_Mutation p.K363N 0.44 tolerated(0.19) benign(0.076) TCGA-HE-7130-01 12 53607847 53607847 A G RARG Missense_Mutation p.I270T 0.38 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 12 6167128 6167128 G C VWF Missense_Mutation p.S539C 0.30 deleterious(0) possibly_damaging(0.754) TCGA-HE-7130-01 12 64061939 64061939 G A DPY19L2 Missense_Mutation p.L79F 0.18 tolerated_low_confidence(0.22) benign(0.004) TCGA-HE-7130-01 12 66522754 66522754 G A LLPH Nonsense_Mutation p.Q45* 0.16 TCGA-HE-7130-01 12 96354342 96354342 G C AMDHD1 Missense_Mutation p.D252H 0.37 deleterious(0.03) benign(0.409) TCGA-HE-7130-01 13 24466208 24466208 G C C1QTNF9B Intron 0.57 TCGA-HE-7130-01 13 37012778 37012778 C T CCNA1 Intron 0.70 TCGA-HE-7130-01 13 53624805 53624805 G C OLFM4 Missense_Mutation p.V478L 0.14 tolerated(1) benign(0.107) TCGA-HE-7130-01 13 61986466 61986466 C T PCDH20 Missense_Mutation p.G589E 0.20 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 13 61986467 61986467 C T PCDH20 Missense_Mutation p.G589R 0.20 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 13 79945132 79945132 C T RBM26 Silent p.E194E 0.14 TCGA-HE-7130-01 14 103932113 103932113 G C MARK3 Missense_Mutation p.D254H 0.16 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 14 105409722 105409722 G A AHNAK2 Silent p.S4022S 0.71 TCGA-HE-7130-01 14 24775203 24775203 G C CIDEB Silent p.L159L 0.22 TCGA-HE-7130-01 14 45642339 45642339 C G FANCM Missense_Mutation p.Q748E 0.60 tolerated(0.21) benign(0.101) TCGA-HE-7130-01 14 70633987 70633987 C T SLC8A3 Missense_Mutation p.E385K 0.59 tolerated(0.05) benign(0.426) TCGA-HE-7130-01 14 73720491 73720491 C T PAPLN Missense_Mutation p.S348L 0.23 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 14 86088747 86088747 G C FLRT2 Missense_Mutation p.D297H 0.14 deleterious(0.01) probably_damaging(0.951) TCGA-HE-7130-01 14 89161727 89161727 C T EML5 Missense_Mutation p.G806R 0.24 deleterious(0) probably_damaging(0.997) TCGA-HE-7130-01 14 91942166 91942166 T C SMEK1 Intron 0.57 TCGA-HE-7130-01 15 41099974 41099974 G A ZFYVE19 Missense_Mutation p.D63N 0.62 deleterious_low_confidence(0.01) benign(0.007) TCGA-HE-7130-01 15 41100015 41100015 G A ZFYVE19 Missense_Mutation p.M76I 0.24 deleterious(0) probably_damaging(0.999) TCGA-HE-7130-01 15 41384347 41384347 C A INO80 Missense_Mutation p.D139Y 0.45 deleterious(0) possibly_damaging(0.695) TCGA-HE-7130-01 15 50906430 50906430 G C TRPM7 Missense_Mutation p.L509V 0.48 deleterious(0.04) possibly_damaging(0.562) TCGA-HE-7130-01 15 51773559 51773559 G A DMXL2 Missense_Mutation p.S1915F 0.48 deleterious(0.04) benign(0.007) TCGA-HE-7130-01 15 86269660 86269660 C G AKAP13 Silent p.L2259L 0.24 TCGA-HE-7130-01 15 91524227 91524227 C T PRC1 Missense_Mutation p.E237K 0.12 tolerated(0.39) possibly_damaging(0.686) TCGA-HE-7130-01 16 30616559 30616559 A G ZNF689 Missense_Mutation p.Y177H 0.27 tolerated(0.13) benign(0.142) TCGA-HE-7130-01 16 30749163 30749163 C G SRCAP Missense_Mutation p.S2601C 0.30 unknown(0) TCGA-HE-7130-01 16 56518732 56518732 G A BBS2 Nonsense_Mutation p.R703* 0.26 TCGA-HE-7130-01 16 66614056 66614056 G C CMTM2 Missense_Mutation p.R138T 0.06 deleterious(0) possibly_damaging(0.765) TCGA-HE-7130-01 16 70316659 70316659 G C AARS Missense_Mutation p.S3C 0.55 deleterious(0) benign(0.285) TCGA-HE-7130-01 16 70896078 70896078 C T HYDIN Missense_Mutation p.E3884K 0.31 benign(0.018) TCGA-HE-7130-01 16 81991631 81991631 G C PLCG2 3'UTR 0.12 TCGA-HE-7130-01 17 1586885 1586885 G C PRPF8 Missense_Mutation p.R71G 0.07 deleterious(0.01) benign(0.44) TCGA-HE-7130-01 17 16330054 16330054 G A TRPV2 Missense_Mutation p.V372I 0.34 tolerated(0.13) benign(0.063) TCGA-HE-7130-01 17 17046031 17046031 C - MPRIP Frame_Shift_Del p.S329Rfs*54 0.23 TCGA-HE-7130-01 17 18565401 18565401 C T ZNF286B Missense_Mutation p.G473E 0.33 deleterious(0.04) benign(0.347) TCGA-HE-7130-01 17 18565413 18565413 C T ZNF286B Missense_Mutation p.C469Y 0.43 deleterious(0) probably_damaging(0.998) TCGA-HE-7130-01 17 37949078 37949078 C T IKZF3 Missense_Mutation p.R91K 0.14 tolerated(0.21) benign(0.02) TCGA-HE-7130-01 17 3926086 3926086 G C ZZEF1 Missense_Mutation p.Q2377E 0.31 tolerated(0.42) benign(0.002) TCGA-HE-7130-01 17 39887800 39887800 G A HAP1 Silent p.L338L 0.62 TCGA-HE-7130-01 17 42293042 42293042 C T UBTF Missense_Mutation p.E152K 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-HE-7130-01 17 44248974 44248974 C - KANSL1 Frame_Shift_Del p.G179Efs*23 0.33 TCGA-HE-7130-01 17 45452155 45452155 G A EFCAB13 Missense_Mutation p.E399K 0.10 deleterious(0.04) possibly_damaging(0.472) TCGA-HE-7130-01 17 46239837 46239837 C G SKAP1 Silent p.L324L 0.08 TCGA-HE-7130-01 17 4873762 4873762 C T CAMTA2 Missense_Mutation p.V983M 0.29 tolerated(0.33) benign(0.007) TCGA-HE-7130-01 17 72338804 72338804 C G KIF19 Missense_Mutation p.I89M 0.50 deleterious(0) probably_damaging(0.992) TCGA-HE-7130-01 17 78120725 78120725 C G EIF4A3 Silent p.S12S 0.17 TCGA-HE-7130-01 18 19399507 19399507 G A MIB1 Missense_Mutation p.D577N 0.07 tolerated(0.32) probably_damaging(0.933) TCGA-HE-7130-01 18 22048831 22048831 C T HRH4 Silent p.L91L 0.11 TCGA-HE-7130-01 18 22057560 22057560 C G HRH4 3'UTR 0.16 TCGA-HE-7130-01 18 23866009 23866009 C T TAF4B Missense_Mutation p.S379L 0.81 tolerated(0.13) benign(0.021) TCGA-HE-7130-01 18 67266711 67266711 C G DOK6 Missense_Mutation p.S89W 0.12 deleterious(0) probably_damaging(0.995) TCGA-HE-7130-01 19 13201202 13201202 C G NFIX Intron 0.40 TCGA-HE-7130-01 19 16631781 16631781 G C C19orf44 3'UTR 0.42 TCGA-HE-7130-01 19 1811677 1811677 G T ATP8B3 Missense_Mutation p.P20H 0.33 deleterious_low_confidence(0.01) benign(0.114) TCGA-HE-7130-01 19 39691364 39691364 G A NCCRP1 Missense_Mutation p.D266N 0.19 tolerated(0.37) probably_damaging(1) TCGA-HE-7130-01 19 40741033 40741033 G C AKT2 Missense_Mutation p.Q429E 0.43 tolerated(0.17) benign(0.051) TCGA-HE-7130-01 19 40832303 40832303 T C C19orf47 Missense_Mutation p.N214S 0.46 tolerated(0.21) benign(0.089) TCGA-HE-7130-01 19 51518766 51518766 G T KLK10 Silent p.I195I 0.17 TCGA-HE-7130-01 19 51563021 51563021 C T KLK13 Intron 0.42 TCGA-HE-7130-01 19 53643875 53643875 G T ZNF347 Missense_Mutation p.P737T 0.16 deleterious(0) probably_damaging(0.997) TCGA-HE-7130-01 19 54377552 54377552 C T MYADM Missense_Mutation p.L257F 0.19 deleterious(0.01) benign(0.424) TCGA-HE-7130-01 19 55450843 55450843 G A NLRP7 Silent p.F448F 0.15 TCGA-HE-7130-01 19 56694579 56694579 G C GALP Missense_Mutation p.G98A 0.33 tolerated_low_confidence(0.38) probably_damaging(0.91) TCGA-HE-7130-01 19 57641187 57641187 G C USP29 Missense_Mutation p.D382H 0.41 deleterious(0) probably_damaging(0.969) TCGA-HE-7130-01 19 6743264 6743264 G C TRIP10 Missense_Mutation p.E135D 0.09 tolerated(0.5) benign(0.024) TCGA-HE-7130-01 1 10431203 10431203 C T KIF1B Missense_Mutation p.S1564F 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-HE-7130-01 1 112309171 112309171 G A DDX20 Missense_Mutation p.E709K 0.31 tolerated(0.39) benign(0.034) TCGA-HE-7130-01 1 112309315 112309315 G A DDX20 Missense_Mutation p.D757N 0.30 tolerated_low_confidence(0.07) benign(0.008) TCGA-HE-7130-01 1 113124686 113124686 C T ST7L Missense_Mutation p.E333K 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-HE-7130-01 1 11775243 11775243 C T DRAXIN Silent p.F305F 0.17 TCGA-HE-7130-01 1 145440057 145440059 AAG - TXNIP In_Frame_Del p.E165del 0.63 TCGA-HE-7130-01 1 150981055 150981055 C T PRUNE 5'UTR 0.09 TCGA-HE-7130-01 1 151377387 151377387 G A POGZ Missense_Mutation p.P1375L 0.24 deleterious(0.02) benign(0.08) TCGA-HE-7130-01 1 152281276 152281276 G C FLG Missense_Mutation p.S2029C 0.44 possibly_damaging(0.902) TCGA-HE-7130-01 1 154544111 154544111 C A CHRNB2 Nonsense_Mutation p.S271* 0.58 TCGA-HE-7130-01 1 155723194 155723194 G C GON4L Missense_Mutation p.S1881R 0.05 deleterious(0) benign(0.009) TCGA-HE-7130-01 1 15844625 15844625 G A CASP9 Missense_Mutation p.S133F 0.17 deleterious(0.05) possibly_damaging(0.541) TCGA-HE-7130-01 1 158576303 158576303 C T OR10Z1 Silent p.L25L 0.14 TCGA-HE-7130-01 1 158735810 158735810 G A OR6N1 Silent p.I221I 0.51 TCGA-HE-7130-01 1 158943473 158943473 G A PYHIN1 Missense_Mutation p.A466T 0.49 tolerated_low_confidence(0.31) benign(0) TCGA-HE-7130-01 1 16945311 16945311 G A RP5-1182A14.5 3'Flank 0.25 TCGA-HE-7130-01 1 180044161 180044161 C T CEP350 Silent p.L1858L 0.22 TCGA-HE-7130-01 1 21188793 21188793 C G EIF4G3 Missense_Mutation p.E963D 0.08 tolerated(0.2) probably_damaging(0.998) TCGA-HE-7130-01 1 21226358 21226358 C A EIF4G3 Nonsense_Mutation p.E561* 0.24 TCGA-HE-7130-01 1 21226427 21226427 C T EIF4G3 Missense_Mutation p.E538K 0.24 tolerated_low_confidence(0.06) benign(0.066) TCGA-HE-7130-01 1 22413230 22413230 C G CDC42 Silent p.L119L 0.24 TCGA-HE-7130-01 1 22413329 22413329 C G CDC42 Silent p.V152V 0.25 TCGA-HE-7130-01 1 227618233 227618233 C G CTD-2090I13.1 RNA 0.12 TCGA-HE-7130-01 1 2341814 2341814 A C PEX10 Silent p.L63L 0.44 TCGA-HE-7130-01 1 248112585 248112585 G A OR2L8 Silent p.L142L 0.09 TCGA-HE-7130-01 1 38328025 38328025 G C INPP5B Missense_Mutation p.Q902E 0.14 tolerated(0.94) possibly_damaging(0.607) TCGA-HE-7130-01 1 38338748 38338748 G A INPP5B Silent p.L681L 0.17 TCGA-HE-7130-01 1 39991443 39991443 G - BMP8A Frame_Shift_Del p.V395Wfs*33 0.19 TCGA-HE-7130-01 1 44063474 44063474 C T PTPRF Silent p.V623V 0.52 TCGA-HE-7130-01 1 44063522 44063522 C T PTPRF Silent p.I639I 0.55 TCGA-HE-7130-01 1 44064276 44064276 C T PTPRF Intron 0.28 TCGA-HE-7130-01 1 44064369 44064369 C T PTPRF Intron 0.47 TCGA-HE-7130-01 1 89271442 89271442 T - PKN2 Intron 0.75 TCGA-HE-7130-01 1 93705376 93705376 G C CCDC18 Missense_Mutation p.L1021F 0.17 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 20 1161561 1161561 C T TMEM74B Silent p.G234G 0.10 TCGA-HE-7130-01 20 40033767 40033767 G A CHD6 Silent p.L2538L 0.15 TCGA-HE-7130-01 20 40050320 40050320 G A CHD6 Missense_Mutation p.S1652L 0.21 tolerated_low_confidence(0.43) benign(0.003) TCGA-HE-7130-01 20 49195155 49195155 T G PTPN1 Missense_Mutation p.C231G 0.29 deleterious(0) possibly_damaging(0.615) TCGA-HE-7130-01 21 37758385 37758385 G C CHAF1B 5'UTR 0.46 TCGA-HE-7130-01 21 47978259 47978259 G A DIP2A Missense_Mutation p.V1308I 0.29 tolerated(0.21) benign(0.045) TCGA-HE-7130-01 22 21140297 21140297 G A SERPIND1 Missense_Mutation p.R390Q 0.10 deleterious(0.04) probably_damaging(0.993) TCGA-HE-7130-01 22 21140328 21140328 G A SERPIND1 Silent p.E400E 0.11 TCGA-HE-7130-01 22 35806777 35806777 A G MCM5 Missense_Mutation p.I265V 0.31 tolerated(0.77) benign(0.006) TCGA-HE-7130-01 22 36696256 36696256 C G MYH9 Missense_Mutation p.E965Q 0.43 possibly_damaging(0.821) TCGA-HE-7130-01 22 50687534 50687534 C G HDAC10 Missense_Mutation p.E252Q 0.44 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 2 108921890 108921890 G T SULT1C2 Missense_Mutation p.R217L 0.09 tolerated(0.09) benign(0.13) TCGA-HE-7130-01 2 136594743 136594743 C G LCT 5'UTR 0.27 TCGA-HE-7130-01 2 186678413 186678413 A T FSIP2 Missense_Mutation p.I6746L 0.29 benign(0.003) TCGA-HE-7130-01 2 190922196 190922196 C T MSTN Missense_Mutation p.A306T 0.51 deleterious(0) probably_damaging(0.952) TCGA-HE-7130-01 2 202172265 202172265 C G ALS2CR12 Missense_Mutation p.E286Q 0.20 deleterious(0.01) probably_damaging(0.959) TCGA-HE-7130-01 2 241661280 241661280 T C KIF1A Missense_Mutation p.T1563A 0.70 tolerated(0.11) benign(0.201) TCGA-HE-7130-01 2 30976059 30976059 G A CAPN13 Missense_Mutation p.S316L 0.28 deleterious(0) probably_damaging(0.997) TCGA-HE-7130-01 2 32626579 32626579 C T BIRC6 Nonsense_Mutation p.Q436* 0.34 TCGA-HE-7130-01 2 39281894 39281894 G A SOS1 Missense_Mutation p.S194F 0.40 deleterious(0.03) benign(0.008) TCGA-HE-7130-01 2 63826356 63826356 C G MDH1 Nonsense_Mutation p.S161* 0.10 TCGA-HE-7130-01 2 65492181 65492181 G A ACTR2 Missense_Mutation p.E301K 0.38 tolerated(0.06) benign(0.115) TCGA-HE-7130-01 2 71043525 71043525 C T CLEC4F Missense_Mutation p.E330K 0.08 tolerated(0.06) benign(0.048) TCGA-HE-7130-01 2 99012521 99012522 - GT CNGA3 Frame_Shift_Ins p.Y297Vfs*66 0.20 TCGA-HE-7130-01 3 112324296 112324296 G A CCDC80 Missense_Mutation p.H941Y 0.26 deleterious(0) probably_damaging(0.985) TCGA-HE-7130-01 3 124103778 124103778 G C KALRN Missense_Mutation p.K617N 0.48 tolerated(0.13) unknown(0) TCGA-HE-7130-01 3 136699229 136699229 C T IL20RB Intron 0.35 TCGA-HE-7130-01 3 180324303 180324303 G C TTC14 Missense_Mutation p.E362Q 0.56 tolerated(0.24) possibly_damaging(0.903) TCGA-HE-7130-01 3 180337752 180337752 G C CCDC39 Missense_Mutation p.Q669E 0.14 deleterious(0) probably_damaging(0.921) TCGA-HE-7130-01 3 25833175 25833175 T - OXSM Frame_Shift_Del p.F222Lfs*2 0.37 TCGA-HE-7130-01 3 40529738 40529738 G A ZNF619 3'UTR 0.40 TCGA-HE-7130-01 3 50220896 50220896 G C SEMA3F Missense_Mutation p.D378H 0.11 deleterious(0) probably_damaging(0.992) TCGA-HE-7130-01 4 128813651 128813651 G C PLK4 Missense_Mutation p.E724Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-HE-7130-01 4 155505888 155505888 G A FGA Silent p.C663C 0.30 TCGA-HE-7130-01 4 1806099 1806099 A G FGFR3 Missense_Mutation p.Y375C 0.85 deleterious(0) possibly_damaging(0.882) TCGA-HE-7130-01 4 1807891 1807891 G C FGFR3 Missense_Mutation p.K652N 1.00 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 4 1808562 1808562 G A FGFR3 Missense_Mutation p.M727I 0.75 deleterious(0.01) benign(0.309) TCGA-HE-7130-01 4 23830149 23830149 G T PPARGC1A Missense_Mutation p.L211I 0.35 tolerated(0.18) probably_damaging(0.996) TCGA-HE-7130-01 4 57514941 57514941 G A HOPX 3'UTR 0.43 TCGA-HE-7130-01 4 6052355 6052355 C T JAKMIP1 Missense_Mutation p.E620K 0.62 deleterious(0.02) possibly_damaging(0.729) TCGA-HE-7130-01 4 619524 619524 G A PDE6B Missense_Mutation p.E37K 0.24 tolerated(0.62) benign(0.013) TCGA-HE-7130-01 5 140856910 140856910 G A PCDHGC3 Silent p.L409L 0.22 TCGA-HE-7130-01 5 153078520 153078520 G C GRIA1 Missense_Mutation p.A457P 0.21 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 5 156186311 156186311 C T SGCD Silent p.F261F 0.33 TCGA-HE-7130-01 5 70798434 70798434 A - BDP1 Frame_Shift_Del p.N688Ifs*9 0.11 TCGA-HE-7130-01 5 71495628 71495628 C G MAP1B Nonsense_Mutation p.S2149* 0.11 TCGA-HE-7130-01 5 79027353 79027353 C T CMYA5 Missense_Mutation p.S922F 0.52 benign(0.143) TCGA-HE-7130-01 5 79030983 79030983 G C CMYA5 Missense_Mutation p.R2132T 0.42 benign(0.001) TCGA-HE-7130-01 5 79031337 79031337 G A CMYA5 Missense_Mutation p.R2250K 0.55 benign(0.026) TCGA-HE-7130-01 5 79031882 79031882 G C CMYA5 Missense_Mutation p.E2432Q 0.42 probably_damaging(0.968) TCGA-HE-7130-01 5 79032579 79032579 G A CMYA5 Missense_Mutation p.R2664K 0.53 benign(0.052) TCGA-HE-7130-01 5 82786054 82786054 G T VCAN Nonsense_Mutation p.E70* 0.24 TCGA-HE-7130-01 5 82817031 82817031 C G VCAN Missense_Mutation p.S969C 0.08 deleterious(0.02) possibly_damaging(0.525) TCGA-HE-7130-01 6 152557320 152557320 C T SYNE1 Missense_Mutation p.G6773E 0.70 possibly_damaging(0.734) TCGA-HE-7130-01 6 152560730 152560730 G C SYNE1 Missense_Mutation p.Q6669E 0.78 benign(0.018) TCGA-HE-7130-01 6 152730280 152730280 C T SYNE1 Missense_Mutation p.E2155K 0.84 possibly_damaging(0.708) TCGA-HE-7130-01 6 168347543 168347543 A C MLLT4 Missense_Mutation p.K1165T 0.78 deleterious_low_confidence(0) benign(0.05) TCGA-HE-7130-01 6 31324628 31324628 G A HLA-B Silent p.F60F 0.55 TCGA-HE-7130-01 6 43008726 43008726 G A CUL7 Silent p.L1329L 0.30 TCGA-HE-7130-01 6 43468508 43468508 G T TJAP1 Missense_Mutation p.M42I 0.73 tolerated(0.7) benign(0.014) TCGA-HE-7130-01 7 100239125 100239125 C T TFR2 Missense_Mutation p.R3Q 0.14 tolerated_low_confidence(0.11) benign(0.004) TCGA-HE-7130-01 7 143175820 143175820 C T TAS2R41 Silent p.F285F 0.19 TCGA-HE-7130-01 7 150720230 150720230 G A ATG9B Silent p.L241L 0.18 TCGA-HE-7130-01 7 66456129 66456129 C G SBDS Missense_Mutation p.E207Q 0.38 tolerated(0.15) benign(0.354) TCGA-HE-7130-01 7 77539715 77539715 C G PHTF2 Missense_Mutation p.F221L 0.15 tolerated(0.69) benign(0.187) TCGA-HE-7130-01 7 77885410 77885410 C G MAGI2 Missense_Mutation p.D633H 0.13 deleterious(0) probably_damaging(0.973) TCGA-HE-7130-01 7 94035021 94035021 G A COL1A2 Missense_Mutation p.G175S 0.21 unknown(0) TCGA-HE-7130-01 8 10468873 10468873 C T RP1L1 Missense_Mutation p.S912N 0.33 benign(0.066) TCGA-HE-7130-01 8 133945814 133945814 G A TG Missense_Mutation p.E1609K 0.11 tolerated(0.92) benign(0.003) TCGA-HE-7130-01 8 143603450 143603450 G A BAI1 Missense_Mutation p.R1050H 0.40 deleterious(0) benign(0.001) TCGA-HE-7130-01 8 17885162 17885162 G C PCM1 Missense_Mutation p.Q2022H 0.15 deleterious_low_confidence(0.01) benign(0.024) TCGA-HE-7130-01 8 25890622 25890622 G C EBF2 Missense_Mutation p.S177W 0.13 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 8 99019720 99019720 C T MATN2 Silent p.C488C 0.40 TCGA-HE-7130-01 9 123783919 123783919 C G C5 Silent p.L390L 0.08 TCGA-HE-7130-01 9 130712884 130712884 G A FAM102A Intron 0.83 TCGA-HE-7130-01 9 135545615 135545615 G C DDX31 Missense_Mutation p.Q8E 0.70 deleterious_low_confidence(0) benign(0) TCGA-HE-7130-01 9 138594186 138594186 G C KCNT1 Missense_Mutation p.E28Q 0.47 tolerated_low_confidence(0.13) benign(0.023) TCGA-HE-7130-01 9 37729833 37729833 G A FRMPD1 Missense_Mutation p.E241K 0.79 deleterious(0) probably_damaging(0.965) TCGA-HE-7130-01 9 73151243 73151243 G C TRPM3 Missense_Mutation p.P1584A 0.70 tolerated_low_confidence(0.28) probably_damaging(0.999) TCGA-HE-7130-01 X 118370497 118370497 C T PGRMC1 Silent p.S57S 0.15 TCGA-HE-7130-01 X 123202456 123202456 C T STAG2 Nonsense_Mutation p.Q770* 0.31 TCGA-HE-7130-01 X 123680889 123680889 T A TENM1 Missense_Mutation p.Y829F 0.57 tolerated(0.41) benign(0.002) TCGA-HE-7130-01 X 43655117 43655117 C T MAOB Missense_Mutation p.G213R 0.38 deleterious(0) probably_damaging(1) TCGA-HE-7130-01 X 44870205 44870205 G C KDM6A Splice_Site p.X129_splice 0.45 TCGA-HE-7130-01 X 44969446 44969447 AC - KDM6A Frame_Shift_Del p.Q1377Vfs*11 0.31 TCGA-HE-7130-01 X 53641559 53641559 C T HUWE1 Missense_Mutation p.E733K 0.35 probably_damaging(0.969) TCGA-HE-7130-01 X 71426809 71426809 G C ERCC6L Nonsense_Mutation p.S603* 0.07 TCGA-HE-7130-01 X 71886083 71886083 G A PHKA1 Missense_Mutation p.S261L 0.49 deleterious(0) possibly_damaging(0.842) TCGA-HE-A5NF-01 10 102763858 102763858 G C LZTS2 Missense_Mutation p.D335H 0.21 deleterious(0) possibly_damaging(0.67) TCGA-HE-A5NF-01 10 103827682 103827682 G T HPS6 3'UTR 0.12 TCGA-HE-A5NF-01 10 121338280 121338280 A C TIAL1 Missense_Mutation p.W189G 0.20 deleterious(0) probably_damaging(0.977) TCGA-HE-A5NF-01 10 122664157 122664157 G A WDR11 Splice_Site p.X1010_splice 0.15 TCGA-HE-A5NF-01 10 29891267 29891267 T C SVIL Intron 0.32 TCGA-HE-A5NF-01 10 74879794 74879794 G T NUDT13 Missense_Mutation p.K34N 0.32 deleterious(0) probably_damaging(0.979) TCGA-HE-A5NF-01 11 100227028 100227028 C A CNTN5 3'UTR 0.10 TCGA-HE-A5NF-01 11 113619115 113619115 T - ZW10 Frame_Shift_Del p.N318Mfs*16 0.15 TCGA-HE-A5NF-01 11 4592781 4592781 G C C11orf40 Missense_Mutation p.R176G 0.14 tolerated_low_confidence(0.55) benign(0) TCGA-HE-A5NF-01 11 46898795 46898795 T C LRP4 Missense_Mutation p.I1078V 0.14 tolerated_low_confidence(0.53) benign(0.001) TCGA-HE-A5NF-01 11 6646473 6646473 C G DCHS1 Missense_Mutation p.D2368H 0.13 deleterious(0) probably_damaging(0.97) TCGA-HE-A5NF-01 11 838289 838289 T C CD151 3'UTR 0.18 TCGA-HE-A5NF-01 11 94533391 94533391 G T AMOTL1 Missense_Mutation p.M345I 0.17 tolerated(0.26) benign(0.114) TCGA-HE-A5NF-01 12 122281677 122281677 T G HPD Missense_Mutation p.Q298P 0.28 tolerated(0.21) benign(0.174) TCGA-HE-A5NF-01 12 133683062 133683062 T C ZNF140 Missense_Mutation p.L400P 0.16 deleterious(0) probably_damaging(1) TCGA-HE-A5NF-01 12 66546147 66546147 T C TMBIM4 Silent p.L72L 0.16 TCGA-HE-A5NF-01 14 104565246 104565246 C T ASPG Silent p.D190D 0.20 TCGA-HE-A5NF-01 14 20845648 20845648 G T TEP1 Missense_Mutation p.S1960Y 0.21 deleterious(0.01) possibly_damaging(0.794) TCGA-HE-A5NF-01 14 23524349 23524349 T A CDH24 Nonsense_Mutation p.K139* 0.17 TCGA-HE-A5NF-01 14 24885037 24885037 G T NYNRIN Missense_Mutation p.G1361V 0.32 tolerated_low_confidence(0.09) probably_damaging(0.911) TCGA-HE-A5NF-01 14 75516201 75516205 TGAAC - MLH3 Frame_Shift_Del p.V52Sfs*11 0.17 TCGA-HE-A5NF-01 14 92549507 92549507 G C ATXN3 Missense_Mutation p.L191V 0.15 tolerated(0.1) benign(0.17) TCGA-HE-A5NF-01 15 70368460 70368460 T A TLE3 Missense_Mutation p.Q91L 0.12 deleterious(0.01) benign(0.328) TCGA-HE-A5NF-01 15 74640247 74640247 A T CYP11A1 Missense_Mutation p.L140Q 0.14 tolerated(0.07) probably_damaging(0.945) TCGA-HE-A5NF-01 16 30734928 30734928 T C SRCAP Silent p.L1395L 0.24 TCGA-HE-A5NF-01 16 56919183 56919183 A C SLC12A3 Missense_Mutation p.N611T 0.35 deleterious(0) probably_damaging(0.982) TCGA-HE-A5NF-01 17 36508826 36508826 C A SOCS7 Silent p.T233T 0.20 TCGA-HE-A5NF-01 17 48940734 48940734 G C TOB1 Missense_Mutation p.D215E 0.26 tolerated(0.77) benign(0.024) TCGA-HE-A5NF-01 17 6526336 6526336 G C KIAA0753 Missense_Mutation p.R324G 0.26 deleterious(0.05) benign(0.132) TCGA-HE-A5NF-01 17 66878037 66878037 C A ABCA8 Missense_Mutation p.A1265S 0.25 deleterious(0.01) possibly_damaging(0.893) TCGA-HE-A5NF-01 17 7534128 7534128 C G SHBG Missense_Mutation p.H112D 0.28 tolerated(0.2) benign(0.061) TCGA-HE-A5NF-01 19 45397281 45397281 G A TOMM40 Missense_Mutation p.A201T 0.10 tolerated(0.09) benign(0.081) TCGA-HE-A5NF-01 19 54648053 54648053 G A CNOT3 Silent p.K156K 0.16 TCGA-HE-A5NF-01 1 113160637 113160637 A G ST7L Intron 0.18 TCGA-HE-A5NF-01 1 156851384 156851384 C T NTRK1 Silent p.L781L 0.18 TCGA-HE-A5NF-01 1 161495204 161495204 G A HSPA6 Silent p.G252G 0.09 TCGA-HE-A5NF-01 1 20233031 20233031 T C OTUD3 Silent p.N314N 0.16 TCGA-HE-A5NF-01 1 204103755 204103755 C G ETNK2 Intron 0.22 TCGA-HE-A5NF-01 1 62739262 62739262 C T KANK4 Missense_Mutation p.G505D 0.13 tolerated(0.72) benign(0) TCGA-HE-A5NF-01 1 85648463 85648463 A T SYDE2 Missense_Mutation p.L621H 0.15 deleterious(0) probably_damaging(1) TCGA-HE-A5NF-01 1 957703 957703 C A AGRN Silent p.S108S 0.16 TCGA-HE-A5NF-01 20 21492814 21492814 T G NKX2-2 Missense_Mutation p.K190T 0.10 deleterious(0.03) probably_damaging(0.939) TCGA-HE-A5NF-01 20 49621336 49621336 C T KCNG1 Missense_Mutation p.C261Y 0.20 deleterious(0) possibly_damaging(0.825) TCGA-HE-A5NF-01 21 37408418 37408418 G C SETD4 Silent p.T440T 0.20 TCGA-HE-A5NF-01 21 47664760 47664760 C T MCM3AP Missense_Mutation p.G1667R 0.26 deleterious(0.02) possibly_damaging(0.561) TCGA-HE-A5NF-01 22 21119517 21119517 C T PI4KA Nonsense_Mutation p.W815* 0.19 TCGA-HE-A5NF-01 22 44280193 44280193 G A PNPLA5 Missense_Mutation p.R328W 0.24 tolerated(0.18) benign(0.044) TCGA-HE-A5NF-01 2 131801154 131801154 A - ARHGEF4 Frame_Shift_Del p.K533Rfs*35 0.19 TCGA-HE-A5NF-01 2 158178038 158178038 T A ERMN Missense_Mutation p.E213D 0.18 tolerated(0.05) possibly_damaging(0.661) TCGA-HE-A5NF-01 2 170762609 170762609 T A UBR3 Missense_Mutation p.F572I 0.30 deleterious(0) probably_damaging(0.958) TCGA-HE-A5NF-01 2 220416332 220416332 G T OBSL1 Missense_Mutation p.H1868N 0.26 tolerated(0.65) benign(0.371) TCGA-HE-A5NF-01 2 242026825 242026825 A T SNED1 Silent p.R1380R 0.38 TCGA-HE-A5NF-01 3 101404668 101404668 T C RPL24 Silent p.G62G 0.30 TCGA-HE-A5NF-01 3 109046727 109046727 A G DPPA4 3'UTR 0.32 TCGA-HE-A5NF-01 3 114070690 114070690 G A ZBTB20 Missense_Mutation p.H79Y 0.08 deleterious(0) possibly_damaging(0.775) TCGA-HE-A5NF-01 3 136060303 136060303 T A STAG1 Missense_Mutation p.R1179S 0.26 tolerated_low_confidence(0.08) possibly_damaging(0.589) TCGA-HE-A5NF-01 3 17550057 17550057 A G TBC1D5 Silent p.Y2Y 0.29 TCGA-HE-A5NF-01 3 183955086 183955086 A T VWA5B2 Missense_Mutation p.T536S 0.15 tolerated(0.94) benign(0.002) TCGA-HE-A5NF-01 3 184100072 184100072 G C CHRD Intron 0.35 TCGA-HE-A5NF-01 3 44492934 44492934 C T ZNF445 Missense_Mutation p.G157D 0.20 deleterious(0.01) probably_damaging(0.931) TCGA-HE-A5NF-01 3 9100033 9100033 G T SRGAP3 Missense_Mutation p.L309M 0.16 deleterious(0.04) benign(0.111) TCGA-HE-A5NF-01 4 100231924 100231924 T C ADH1B Silent p.K367K 0.13 TCGA-HE-A5NF-01 4 126408614 126408614 A - FAT4 Frame_Shift_Del p.N4312Mfs*83 0.20 TCGA-HE-A5NF-01 4 39757353 39757353 A G UBE2K Missense_Mutation p.D98G 0.12 deleterious(0.03) benign(0.313) TCGA-HE-A5NF-01 4 48887522 48887522 G T OCIAD2 Missense_Mutation p.D148E 0.20 tolerated(0.07) benign(0.001) TCGA-HE-A5NF-01 5 126790286 126790286 G T MEGF10 Missense_Mutation p.M1003I 0.15 tolerated(0.08) benign(0) TCGA-HE-A5NF-01 5 138118896 138118897 GG - CTNNA1 Frame_Shift_Del p.G46Afs*3 0.15 TCGA-HE-A5NF-01 5 1394869 1394869 C T SLC6A3 Missense_Mutation p.R615H 0.06 tolerated(0.41) benign(0.004) TCGA-HE-A5NF-01 5 147661756 147661756 C T SPINK13 Silent p.H66H 0.16 TCGA-HE-A5NF-01 5 156908922 156908922 C A ADAM19 Missense_Mutation p.K860N 0.24 deleterious(0) probably_damaging(0.969) TCGA-HE-A5NF-01 5 178360035 178360035 G T ZFP2 3'UTR 0.10 TCGA-HE-A5NF-01 5 6378594 6378594 C A MED10 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-HE-A5NF-01 6 122766258 122766258 C G SERINC1 Missense_Mutation p.W431C 0.20 deleterious(0) probably_damaging(1) TCGA-HE-A5NF-01 6 32119881 32119881 C T PRRT1 5'Flank 0.12 TCGA-HE-A5NF-01 6 41000635 41000635 A G UNC5CL Missense_Mutation p.Y313H 0.13 tolerated(0.27) possibly_damaging(0.837) TCGA-HE-A5NF-01 6 49986835 49986835 T G DEFB110 Missense_Mutation p.K20T 0.05 deleterious(0.01) benign(0.037) TCGA-HE-A5NF-01 7 102065565 102065565 T A PRKRIP1 3'UTR 0.16 TCGA-HE-A5NF-01 7 44150535 44150535 G - AEBP1 Frame_Shift_Del p.D504Tfs*5 0.19 TCGA-HE-A5NF-01 7 75054953 75054953 G A POM121C Missense_Mutation p.P204L 0.15 deleterious(0) possibly_damaging(0.487) TCGA-HE-A5NF-01 7 98785927 98785927 A G KPNA7 Missense_Mutation p.V299A 0.10 deleterious(0) possibly_damaging(0.747) TCGA-HE-A5NF-01 8 132002781 132002781 G A ADCY8 Missense_Mutation p.A323V 0.08 deleterious(0.01) benign(0.095) TCGA-HE-A5NF-01 8 133899726 133899727 - TA TG Frame_Shift_Ins p.C705Tfs*17 0.16 TCGA-HE-A5NF-01 8 25365298 25365298 T C CDCA2 3'UTR 0.21 TCGA-HE-A5NF-01 8 33454873 33454873 G T DUSP26 Missense_Mutation p.T54K 0.18 tolerated(0.61) probably_damaging(0.994) TCGA-HE-A5NF-01 8 49647656 49647656 G A EFCAB1 Missense_Mutation p.H19Y 0.08 tolerated(0.09) benign(0.04) TCGA-HE-A5NF-01 8 86162972 86162972 C T CA13 Missense_Mutation p.P14L 0.12 deleterious(0) probably_damaging(0.999) TCGA-HE-A5NF-01 9 113704022 113704022 G A LPAR1 Missense_Mutation p.R158W 0.15 deleterious(0.01) possibly_damaging(0.727) TCGA-HE-A5NF-01 9 131362363 131362363 A T SPTAN1 Missense_Mutation p.E1183V 0.10 deleterious_low_confidence(0.01) probably_damaging(0.951) TCGA-HE-A5NF-01 9 139633991 139633991 T C LCN10 Missense_Mutation p.T197A 0.12 tolerated(0.08) benign(0.217) TCGA-HE-A5NF-01 9 86617525 86617525 G T RMI1 Missense_Mutation p.D542Y 0.20 deleterious(0) probably_damaging(0.985) TCGA-HE-A5NF-01 X 36403047 36403047 C T CXorf30 Missense_Mutation p.R610C 0.28 deleterious(0.04) benign(0.059) TCGA-HE-A5NH-01 10 103871028 103871028 A G LDB1 Missense_Mutation p.L53P 0.45 tolerated(0.21) possibly_damaging(0.549) TCGA-HE-A5NH-01 10 126311947 126311947 G A FAM53B Missense_Mutation p.S378L 0.59 tolerated(0.29) benign(0.116) TCGA-HE-A5NH-01 10 127806755 127806755 T G ADAM12 Missense_Mutation p.E155A 0.37 deleterious(0.02) possibly_damaging(0.654) TCGA-HE-A5NH-01 10 16941145 16941145 G C CUBN Missense_Mutation p.I2816M 0.42 deleterious(0) possibly_damaging(0.836) TCGA-HE-A5NH-01 10 64565720 64565720 A G ADO 3'UTR 0.33 TCGA-HE-A5NH-01 10 64974605 64974605 T G JMJD1C Missense_Mutation p.K441T 0.31 deleterious_low_confidence(0.01) benign(0.161) TCGA-HE-A5NH-01 11 118464375 118464375 T G ARCN1 Missense_Mutation p.N401K 0.42 tolerated(0.34) benign(0.005) TCGA-HE-A5NH-01 11 121475939 121475939 T G SORL1 Missense_Mutation p.V1590G 0.39 deleterious(0.01) possibly_damaging(0.767) TCGA-HE-A5NH-01 11 133789844 133789844 G A IGSF9B Missense_Mutation p.S1259F 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.568) TCGA-HE-A5NH-01 11 15096663 15096663 T A CALCB Missense_Mutation p.L48H 0.42 deleterious(0.01) probably_damaging(1) TCGA-HE-A5NH-01 11 17150900 17150900 T G PIK3C2A Missense_Mutation p.R782S 0.36 deleterious(0.05) probably_damaging(0.999) TCGA-HE-A5NH-01 11 2428360 2428360 C T TRPM5 Missense_Mutation p.R1036Q 0.62 tolerated(0.62) benign(0.011) TCGA-HE-A5NH-01 11 56432020 56432028 CCCTTGATC - OR5AR1 In_Frame_Del p.P287_I289del 0.17 TCGA-HE-A5NH-01 11 70202285 70202285 A T PPFIA1 Missense_Mutation p.D836V 0.38 deleterious(0.02) benign(0.082) TCGA-HE-A5NH-01 11 75431106 75431106 C A MOGAT2 Missense_Mutation p.A54E 0.39 tolerated(0.18) probably_damaging(0.947) TCGA-HE-A5NH-01 12 111168372 111168372 C T PPP1CC Missense_Mutation p.C127Y 0.35 deleterious_low_confidence(0) benign(0.375) TCGA-HE-A5NH-01 12 26276658 26276658 T C BHLHE41 Missense_Mutation p.E84G 0.38 deleterious(0) probably_damaging(0.999) TCGA-HE-A5NH-01 12 29502995 29502995 A T ERGIC2 Silent p.I193I 0.36 TCGA-HE-A5NH-01 12 6760401 6760401 C T ING4 Splice_Site p.X237_splice 0.38 TCGA-HE-A5NH-01 12 80730767 80730767 A T OTOGL Missense_Mutation p.N1606Y 0.50 deleterious(0.01) benign(0.058) TCGA-HE-A5NH-01 13 108882595 108882595 A T ABHD13 3'UTR 0.39 TCGA-HE-A5NH-01 14 102674963 102674964 - A WDR20 Frame_Shift_Ins p.T184Nfs*26 0.17 TCGA-HE-A5NH-01 14 106322100 106322100 G A IGHM Missense_Mutation p.S75F 0.24 deleterious(0.01) probably_damaging(0.957) TCGA-HE-A5NH-01 14 23528321 23528321 G A ACIN1 3'UTR 0.45 TCGA-HE-A5NH-01 14 35222649 35222649 G A BAZ1A 3'UTR 0.21 TCGA-HE-A5NH-01 14 38678806 38678806 T C SSTR1 Missense_Mutation p.V71A 0.37 deleterious(0.04) benign(0.092) TCGA-HE-A5NH-01 14 64988346 64988346 C G ZBTB1 Missense_Mutation p.L42V 0.32 deleterious(0) probably_damaging(0.994) TCGA-HE-A5NH-01 15 24921405 24921405 C T NPAP1 Missense_Mutation p.R131C 0.34 deleterious(0.04) benign(0.429) TCGA-HE-A5NH-01 15 30010892 30010892 C A TJP1 Missense_Mutation p.A1152S 0.34 tolerated_low_confidence(0.65) benign(0.001) TCGA-HE-A5NH-01 15 40631768 40631768 G A C15orf52 Missense_Mutation p.T103I 0.44 deleterious(0) possibly_damaging(0.687) TCGA-HE-A5NH-01 15 54557623 54557623 T A UNC13C Silent p.V1249V 0.40 TCGA-HE-A5NH-01 15 59397448 59397448 T A CCNB2 5'UTR 0.47 TCGA-HE-A5NH-01 15 64424017 64424017 G C SNX1 Missense_Mutation p.E383Q 0.40 tolerated(0.07) benign(0.331) TCGA-HE-A5NH-01 15 85411510 85411510 G C ALPK3 Missense_Mutation p.R1849S 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-HE-A5NH-01 15 89744278 89744278 A G ABHD2 3'UTR 0.38 TCGA-HE-A5NH-01 16 31072415 31072415 C G ZNF668 Missense_Mutation p.G635R 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.585) TCGA-HE-A5NH-01 16 3645657 3645657 C - SLX4 Frame_Shift_Del p.F655Lfs*36 0.28 TCGA-HE-A5NH-01 16 81193369 81193369 C G PKD1L2 RNA 0.43 TCGA-HE-A5NH-01 17 27959441 27959441 T A SSH2 Missense_Mutation p.K897M 0.56 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HE-A5NH-01 17 46933518 46933518 G C CALCOCO2 Missense_Mutation p.R350T 0.29 tolerated(0.09) benign(0.395) TCGA-HE-A5NH-01 17 72590154 72590154 G A C17orf77 3'UTR 0.19 TCGA-HE-A5NH-01 18 3452341 3452341 G C TGIF1 Missense_Mutation p.G122R 0.48 deleterious_low_confidence(0) benign(0.032) TCGA-HE-A5NH-01 18 8378412 8378412 G T PTPRM Silent p.R1204R 0.37 TCGA-HE-A5NH-01 19 15739650 15739650 C G CYP4F8 RNA 0.46 TCGA-HE-A5NH-01 19 39220101 39220101 G A ACTN4 3'UTR 0.42 TCGA-HE-A5NH-01 19 39735444 39735444 C T IFNL3 Missense_Mutation p.R55K 0.31 tolerated(1) benign(0.003) TCGA-HE-A5NH-01 19 43708130 43708130 G A PSG4 Missense_Mutation p.T113M 0.31 deleterious(0) probably_damaging(1) TCGA-HE-A5NH-01 19 47767895 47767895 G T CCDC9 Missense_Mutation p.K166N 0.34 deleterious(0) probably_damaging(0.977) TCGA-HE-A5NH-01 19 53269420 53269420 T A ZNF600 Missense_Mutation p.E530V 0.35 tolerated(0.1) probably_damaging(0.996) TCGA-HE-A5NH-01 19 53959526 53959526 T G ZNF761 RNA 0.46 TCGA-HE-A5NH-01 19 5832530 5832530 G T FUT6 Missense_Mutation p.L17M 0.43 deleterious(0.01) probably_damaging(1) TCGA-HE-A5NH-01 1 109439646 109439646 T G GPSM2 Missense_Mutation p.F73V 0.42 deleterious(0) probably_damaging(1) TCGA-HE-A5NH-01 1 153533808 153533819 AATTAAAATATT - S100A2 3'UTR 0.63 TCGA-HE-A5NH-01 1 184723718 184723718 T - EDEM3 Frame_Shift_Del p.V22Wfs*23 0.21 TCGA-HE-A5NH-01 1 186082053 186082053 A G HMCN1 Missense_Mutation p.K3700R 0.34 benign(0.049) TCGA-HE-A5NH-01 1 23693623 23693623 G A ZNF436 Silent p.T24T 0.38 TCGA-HE-A5NH-01 1 90179946 90179946 A C LRRC8C Missense_Mutation p.H606P 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-HE-A5NH-01 1 93073196 93073196 T A EVI5 Missense_Mutation p.K623I 0.51 deleterious(0) possibly_damaging(0.748) TCGA-HE-A5NH-01 20 20026023 20026023 A T CRNKL1 Missense_Mutation p.F405I 0.35 tolerated(0.14) benign(0.075) TCGA-HE-A5NH-01 20 36841970 36841970 C T KIAA1755 Missense_Mutation p.R1026Q 0.43 tolerated(0.74) benign(0.005) TCGA-HE-A5NH-01 20 60967982 60967982 C G CABLES2 Silent p.S326S 0.34 TCGA-HE-A5NH-01 22 20077782 20077782 G C DGCR8 Splice_Site p.X436_splice 0.44 TCGA-HE-A5NH-01 22 39138494 39138494 A T SUN2 Missense_Mutation p.F315I 0.49 tolerated(0.16) benign(0.064) TCGA-HE-A5NH-01 22 46931730 46931730 G A CELSR1 Silent p.Y446Y 0.32 TCGA-HE-A5NH-01 2 152320162 152320162 A T RIF1 Missense_Mutation p.K1376N 0.43 tolerated(0.11) benign(0.01) TCGA-HE-A5NH-01 2 15519770 15519770 G T NBAS Missense_Mutation p.F1182L 0.41 deleterious(0.01) possibly_damaging(0.883) TCGA-HE-A5NH-01 2 15841434 15841434 A G AC008271.1 Silent p.K73K 0.49 TCGA-HE-A5NH-01 2 160825863 160825863 C G PLA2R1 Missense_Mutation p.D890H 0.22 deleterious(0) probably_damaging(0.993) TCGA-HE-A5NH-01 2 189406165 189406165 A G GULP1 Intron 0.55 TCGA-HE-A5NH-01 2 219001255 219001255 T A CXCR2 3'UTR 0.38 TCGA-HE-A5NH-01 2 219611762 219611762 A C TTLL4 Missense_Mutation p.K671Q 0.36 deleterious(0) probably_damaging(1) TCGA-HE-A5NH-01 2 219878079 219878079 C T CCDC108 Missense_Mutation p.G1287S 0.42 deleterious(0.03) probably_damaging(1) TCGA-HE-A5NH-01 2 220349151 220349151 C T SPEG Silent p.S2322S 0.33 TCGA-HE-A5NH-01 2 234601562 234601562 A G UGT1A6 5'UTR 0.27 TCGA-HE-A5NH-01 2 87012945 87012945 T A CD8A 3'UTR 0.37 TCGA-HE-A5NH-01 3 133306987 133306987 C A CDV3 3'UTR 0.12 TCGA-HE-A5NH-01 3 137813760 137813760 A T DZIP1L Missense_Mutation p.W218R 0.35 tolerated(0.84) benign(0.124) TCGA-HE-A5NH-01 3 149095414 149095414 T A TM4SF1 5'UTR 0.55 TCGA-HE-A5NH-01 3 189598102 189598102 C G TP63 Intron 0.50 TCGA-HE-A5NH-01 3 27760357 27760358 - T EOMES Frame_Shift_Ins p.Y396Ifs*9 0.21 TCGA-HE-A5NH-01 3 3139630 3139630 A - IL5RA Frame_Shift_Del p.A212Rfs*28 0.30 TCGA-HE-A5NH-01 3 47460314 47460314 C A SCAP Missense_Mutation p.V654F 0.19 tolerated(0.09) benign(0.408) TCGA-HE-A5NH-01 3 53126088 53126088 T A RFT1 Splice_Site p.X487_splice 0.50 TCGA-HE-A5NH-01 3 93761993 93761993 T - ARL13B Frame_Shift_Del p.N311Kfs*6 0.23 TCGA-HE-A5NH-01 3 9971714 9971714 T C IL17RC Missense_Mutation p.S458P 0.38 deleterious(0.01) benign(0.027) TCGA-HE-A5NH-01 4 151505376 151505376 A G MAB21L2 3'UTR 0.38 TCGA-HE-A5NH-01 4 36069579 36069579 G A ARAP2 Missense_Mutation p.R1689W 0.40 deleterious(0) probably_damaging(0.958) TCGA-HE-A5NH-01 4 47427723 47427723 C G GABRB1 Silent p.T371T 0.39 TCGA-HE-A5NH-01 5 120021685 120021685 C A PRR16 Missense_Mutation p.Q43K 0.42 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HE-A5NH-01 5 132088594 132088594 G A CCNI2 Missense_Mutation p.V348I 0.40 deleterious(0.05) benign(0.175) TCGA-HE-A5NH-01 5 137354741 137354741 T C FAM13B Missense_Mutation p.I20M 0.46 tolerated(0.05) probably_damaging(0.996) TCGA-HE-A5NH-01 5 75427544 75427544 C T SV2C 5'UTR 0.39 TCGA-HE-A5NH-01 5 7895903 7895903 C - MTRR Frame_Shift_Del p.I567Sfs*2 0.33 TCGA-HE-A5NH-01 6 16143330 16143330 A G MYLIP Missense_Mutation p.M182V 0.49 deleterious(0.02) benign(0.003) TCGA-HE-A5NH-01 6 25811999 25811999 C T SLC17A1 Splice_Site p.X300_splice 0.36 TCGA-HE-A5NH-01 6 4069042 4069042 A G FAM217A Missense_Mutation p.L472P 0.35 deleterious(0.04) benign(0.117) TCGA-HE-A5NH-01 6 53370243 53370243 G C GCLC Missense_Mutation p.L448V 0.40 tolerated(0.16) possibly_damaging(0.764) TCGA-HE-A5NH-01 6 88046811 88046811 A C SMIM8 Missense_Mutation p.Q21P 0.49 deleterious(0.04) benign(0.081) TCGA-HE-A5NH-01 7 72298704 72298704 A T TYW1B 5'UTR 0.25 TCGA-HE-A5NH-01 7 74212602 74212602 C T GTF2IRD2 Missense_Mutation p.G417R 0.21 deleterious(0) probably_damaging(0.995) TCGA-HE-A5NH-01 8 10558092 10558092 A T C8orf74 3'UTR 0.47 TCGA-HE-A5NH-01 8 141301159 141301159 C G TRAPPC9 Missense_Mutation p.G694A 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-HE-A5NH-01 8 145745730 145745730 A G LRRC14 Silent p.T146T 0.15 TCGA-HE-A5NH-01 8 17579357 17579357 T A MTUS1 Intron 0.47 TCGA-HE-A5NH-01 8 19811710 19811710 C T LPL Silent p.D207D 0.47 TCGA-HE-A5NH-01 8 26211991 26211991 T C PPP2R2A Missense_Mutation p.I73T 0.34 tolerated(0.73) benign(0.002) TCGA-HE-A5NH-01 8 62460750 62460750 C T ASPH Silent p.E548E 0.41 TCGA-HE-A5NH-01 9 131256869 131256869 T C ODF2 Silent p.A611A 0.40 TCGA-HE-A5NH-01 9 134019825 134019825 G C NUP214 Missense_Mutation p.G485R 0.41 probably_damaging(0.979) TCGA-HE-A5NH-01 9 43685275 43685275 G A CNTNAP3B 5'UTR 0.26 TCGA-HE-A5NH-01 9 70919081 70919082 GG - FOXD4L3 Frame_Shift_Del p.R405Lfs*57 0.13 TCGA-HE-A5NH-01 9 84564155 84564155 G T RP11-383M4.6 Intron 0.35 TCGA-HE-A5NH-01 9 97055483 97055483 C T ZNF169 Intron 0.44 TCGA-HE-A5NH-01 X 138880882 138880882 A C ATP11C Missense_Mutation p.L247R 0.84 deleterious(0) probably_damaging(1) TCGA-HE-A5NH-01 X 53245084 53245084 T C KDM5C Missense_Mutation p.T286A 0.78 tolerated(0.82) benign(0) TCGA-HE-A5NI-01 10 102738660 102738660 G A SEMA4G Missense_Mutation p.G233D 0.36 deleterious(0) probably_damaging(1) TCGA-HE-A5NI-01 10 103899235 103899235 G A PPRC1 Missense_Mutation p.A324T 0.32 tolerated(0.79) benign(0.001) TCGA-HE-A5NI-01 10 124339398 124339398 C G DMBT1 Missense_Mutation p.D328E 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-HE-A5NI-01 10 32320043 32320043 A G KIF5B Silent p.T513T 0.29 TCGA-HE-A5NI-01 10 49482618 49482618 T C FRMPD2 5'UTR 0.31 TCGA-HE-A5NI-01 10 94834101 94834101 G A CYP26A1 Missense_Mutation p.G76S 0.32 deleterious(0.02) probably_damaging(1) TCGA-HE-A5NI-01 11 4676289 4676289 A G OR51E1 3'UTR 0.37 TCGA-HE-A5NI-01 11 46842783 46842783 T C CKAP5 5'UTR 0.38 TCGA-HE-A5NI-01 11 559239 559239 C A C11orf35 Intron 0.51 TCGA-HE-A5NI-01 11 73748552 73748561 AGGTTACTGG - C2CD3 Frame_Shift_Del p.S1948Wfs*8 0.39 TCGA-HE-A5NI-01 11 74351894 74351894 C A POLD3 3'UTR 0.24 TCGA-HE-A5NI-01 11 89896525 89896525 G A NAALAD2 Missense_Mutation p.A375T 0.31 deleterious(0) benign(0.004) TCGA-HE-A5NI-01 12 121855373 121855374 AG - RNF34 Frame_Shift_Del p.R99Mfs*41 0.34 TCGA-HE-A5NI-01 12 13102558 13102558 A T GPRC5D Missense_Mutation p.L254Q 0.53 deleterious(0) probably_damaging(1) TCGA-HE-A5NI-01 12 41966603 41966603 A - PDZRN4 Frame_Shift_Del p.N675Tfs*18 0.21 TCGA-HE-A5NI-01 12 51751976 51751982 ACCAGGA - GALNT6 Frame_Shift_Del p.S478Tfs*14 0.15 TCGA-HE-A5NI-01 12 53722359 53722359 C T SP7 Silent p.R289R 0.35 TCGA-HE-A5NI-01 12 56216194 56216194 A G DNAJC14 Missense_Mutation p.F621L 0.52 tolerated(0.12) probably_damaging(0.989) TCGA-HE-A5NI-01 12 56347985 56347985 C A PMEL 3'UTR 0.51 TCGA-HE-A5NI-01 12 63991615 63991615 G A DPY19L2 Missense_Mutation p.P479S 0.22 tolerated(0.08) benign(0.219) TCGA-HE-A5NI-01 12 98925573 98925573 G C TMPO Missense_Mutation p.Q174H 0.23 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-HE-A5NI-01 13 23906370 23906371 - A SACS Frame_Shift_Ins p.S3882Ffs*10 0.23 TCGA-HE-A5NI-01 14 24654679 24654679 A T IPO4 Missense_Mutation p.S422T 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-HE-A5NI-01 14 36300676 36300676 T - BRMS1L Frame_Shift_Del p.E69Kfs*16 0.28 TCGA-HE-A5NI-01 14 51223359 51223359 C G NIN Missense_Mutation p.E1463D 0.32 tolerated(0.13) benign(0.034) TCGA-HE-A5NI-01 14 91338316 91338316 A G RPS6KA5 3'UTR 0.47 TCGA-HE-A5NI-01 14 93397675 93397675 A G CHGA Missense_Mutation p.T146A 0.35 tolerated(0.49) benign(0.003) TCGA-HE-A5NI-01 15 101152488 101152488 G A ASB7 Missense_Mutation p.A23T 0.39 tolerated(0.29) possibly_damaging(0.817) TCGA-HE-A5NI-01 15 101865152 101865152 A G PCSK6 Silent p.A759A 0.21 TCGA-HE-A5NI-01 15 34445066 34445072 ATATGTT - KATNBL1 Frame_Shift_Del p.T120Wfs*42 0.25 TCGA-HE-A5NI-01 15 59911000 59911000 T C GCNT3 Missense_Mutation p.I188T 0.41 deleterious(0) benign(0.41) TCGA-HE-A5NI-01 15 65956990 65956991 - T DENND4A Frame_Shift_Ins p.S1809Rfs*7 0.18 TCGA-HE-A5NI-01 15 70991969 70991969 G A UACA Nonsense_Mutation p.R37* 0.35 TCGA-HE-A5NI-01 15 92973323 92973323 T C ST8SIA2 Missense_Mutation p.L48S 0.36 benign(0.143) TCGA-HE-A5NI-01 16 30316507 30316507 G T RP11-347C12.2 RNA 0.19 TCGA-HE-A5NI-01 16 30733555 30733555 G C SRCAP Missense_Mutation p.L1218F 0.27 possibly_damaging(0.587) TCGA-HE-A5NI-01 16 31371302 31371302 G A ITGAX Missense_Mutation p.R208H 0.57 tolerated(0.12) benign(0.093) TCGA-HE-A5NI-01 16 58031774 58031774 G A ZNF319 Silent p.F132F 0.47 TCGA-HE-A5NI-01 16 71772895 71772895 T A AP1G1 Missense_Mutation p.S743C 0.27 deleterious(0.03) benign(0.035) TCGA-HE-A5NI-01 16 74425662 74425662 A G NPIPB15 Missense_Mutation p.N339S 0.10 tolerated_low_confidence(0.14) probably_damaging(0.91) TCGA-HE-A5NI-01 17 1585300 1585301 - T PRPF8 Frame_Shift_Ins p.R156Kfs*3 0.09 TCGA-HE-A5NI-01 17 35615281 35615281 A T ACACA Silent p.I505I 0.54 TCGA-HE-A5NI-01 17 39092459 39092459 C G KRT23 Splice_Site p.X132_splice 0.54 TCGA-HE-A5NI-01 17 40717998 40717998 T G COASY 3'UTR 0.48 TCGA-HE-A5NI-01 17 65362549 65362549 G C PSMD12 Silent p.P29P 0.41 TCGA-HE-A5NI-01 17 73872839 73872839 G A TRIM47 Missense_Mutation p.A244V 0.63 tolerated(0.79) benign(0.253) TCGA-HE-A5NI-01 18 19192321 19192321 T C SNRPD1 5'UTR 0.26 TCGA-HE-A5NI-01 18 21914248 21914248 T C OSBPL1A Silent p.A147A 0.29 TCGA-HE-A5NI-01 19 14070072 14070072 G A DCAF15 Missense_Mutation p.A334T 0.50 tolerated(0.05) probably_damaging(0.969) TCGA-HE-A5NI-01 19 14674655 14674657 CGT - TECR In_Frame_Del p.V70del 0.39 TCGA-HE-A5NI-01 19 47996229 47996229 T C NAPA Missense_Mutation p.I184V 0.40 tolerated(0.09) benign(0.018) TCGA-HE-A5NI-01 19 4839279 4839279 C G PLIN3 Missense_Mutation p.Q410H 0.07 tolerated(0.33) benign(0.02) TCGA-HE-A5NI-01 19 4839466 4839466 A C PLIN3 Missense_Mutation p.I348S 0.32 deleterious(0) probably_damaging(0.968) TCGA-HE-A5NI-01 19 504882 504882 C A MADCAM1 Missense_Mutation p.P356T 0.30 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-HE-A5NI-01 19 504883 504883 C T MADCAM1 Missense_Mutation p.P356L 0.30 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-HE-A5NI-01 19 52658860 52658860 T - ZNF836 Frame_Shift_Del p.K692Nfs*43 0.32 TCGA-HE-A5NI-01 19 58723654 58723658 TACCT - ZNF274 Frame_Shift_Del p.T369Afs*30 0.21 TCGA-HE-A5NI-01 19 58724017 58724017 G C ZNF274 Silent p.R489R 0.53 TCGA-HE-A5NI-01 19 58991652 58991652 G A ZNF446 Silent p.V304V 0.31 TCGA-HE-A5NI-01 19 59082640 59082640 G A MZF1 Silent p.G39G 0.30 TCGA-HE-A5NI-01 1 118165851 118165851 C G FAM46C Missense_Mutation p.P121A 0.44 deleterious(0) probably_damaging(0.998) TCGA-HE-A5NI-01 1 118169023 118169023 G T FAM46C 3'UTR 0.33 TCGA-HE-A5NI-01 1 12052666 12052667 AC - MFN2 Frame_Shift_Del p.D77Gfs*13 0.27 TCGA-HE-A5NI-01 1 161199281 161199281 A G TOMM40L 3'UTR 0.64 TCGA-HE-A5NI-01 1 16260463 16260463 T G SPEN Silent p.V2576V 0.35 TCGA-HE-A5NI-01 1 19611546 19611546 A G AKR7A3 Silent p.F190F 0.39 TCGA-HE-A5NI-01 1 203819761 203819761 C T ZC3H11A Silent p.L686L 0.43 TCGA-HE-A5NI-01 1 205272646 205272646 G - NUAK2 Frame_Shift_Del p.L607* 0.28 TCGA-HE-A5NI-01 1 208213052 208213052 C T PLXNA2 Missense_Mutation p.G1472S 0.27 deleterious(0) probably_damaging(0.998) TCGA-HE-A5NI-01 1 222885413 222885413 A C AIDA Intron 0.30 TCGA-HE-A5NI-01 1 223900487 223900487 C A CAPN2 Missense_Mutation p.P49T 0.43 deleterious(0.04) benign(0.008) TCGA-HE-A5NI-01 1 35569920 35569920 G C ZMYM1 Silent p.V148V 0.40 TCGA-HE-A5NI-01 1 51946986 51946986 A C EPS15 Missense_Mutation p.L12V 0.33 tolerated(0.07) possibly_damaging(0.567) TCGA-HE-A5NI-01 1 63284805 63284806 - A ATG4C Frame_Shift_Ins p.I176Nfs*12 0.14 TCGA-HE-A5NI-01 1 8422784 8422784 T C RERE Missense_Mutation p.S621G 0.34 probably_damaging(0.983) TCGA-HE-A5NI-01 20 32856797 32856797 A G ASIP Missense_Mutation p.K75E 0.48 deleterious(0.01) probably_damaging(0.973) TCGA-HE-A5NI-01 20 34618475 34618475 C A CNBD2 Missense_Mutation p.P542T 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-HE-A5NI-01 20 43587180 43587180 A G TOMM34 Intron 0.26 TCGA-HE-A5NI-01 20 8608961 8608961 T G PLCB1 Silent p.L89L 0.30 TCGA-HE-A5NI-01 21 31874188 31874188 T - KRTAP19-5 3'UTR 0.27 TCGA-HE-A5NI-01 22 18769239 18769239 C - GGT3P RNA 0.21 TCGA-HE-A5NI-01 22 22064932 22064932 G C YPEL1 Missense_Mutation p.D34E 0.31 tolerated(0.25) benign(0.134) TCGA-HE-A5NI-01 22 33679190 33679190 G A LARGE Silent p.F625F 0.33 TCGA-HE-A5NI-01 2 102493592 102493592 C G MAP4K4 Silent p.V978V 0.29 TCGA-HE-A5NI-01 2 110936067 110936067 G A NPHP1 Missense_Mutation p.L88F 0.05 tolerated(0.1) probably_damaging(0.94) TCGA-HE-A5NI-01 2 113067649 113067649 G A ZC3H6 Missense_Mutation p.R175K 0.09 tolerated(0.1) benign(0.278) TCGA-HE-A5NI-01 2 130899739 130899739 T G CCDC74B Missense_Mutation p.S171R 0.47 deleterious(0.02) probably_damaging(0.95) TCGA-HE-A5NI-01 2 165551885 165551885 C T COBLL1 Missense_Mutation p.V711I 0.05 tolerated(1) benign(0) TCGA-HE-A5NI-01 2 198285209 198285209 T G SF3B1 Missense_Mutation p.K120Q 0.03 tolerated(0.9) benign(0.002) TCGA-HE-A5NI-01 2 200790075 200790075 T A C2orf69 Missense_Mutation p.N208K 0.24 tolerated(1) benign(0.006) TCGA-HE-A5NI-01 2 201721517 201721517 G - CLK1 Frame_Shift_Del p.L358* 0.37 TCGA-HE-A5NI-01 2 201778083 201778083 T A ORC2 Missense_Mutation p.S528C 0.55 deleterious(0) probably_damaging(0.996) TCGA-HE-A5NI-01 2 211542808 211542808 A C CPS1 3'UTR 0.34 TCGA-HE-A5NI-01 2 216271073 216271073 C T FN1 Silent p.R958R 0.17 TCGA-HE-A5NI-01 2 220371525 220371525 G T GMPPA 3'UTR 0.25 TCGA-HE-A5NI-01 2 231372781 231372781 C A SP100 Intron 0.26 TCGA-HE-A5NI-01 2 25972919 25972919 C T ASXL2 Silent p.E502E 0.51 TCGA-HE-A5NI-01 2 26427053 26427053 A C HADHA Missense_Mutation p.I366M 0.27 deleterious(0) possibly_damaging(0.857) TCGA-HE-A5NI-01 2 74320721 74320721 G T TET3 Silent p.G930G 0.29 TCGA-HE-A5NI-01 2 90212190 90212190 C A IGKV3D-11 Silent p.T94T 0.20 TCGA-HE-A5NI-01 3 101450739 101450739 T C CEP97 Missense_Mutation p.L168P 0.21 deleterious(0) probably_damaging(0.986) TCGA-HE-A5NI-01 3 113377487 113377488 TT G KIAA2018 Frame_Shift_Del p.K1014Tfs*25 0.10 TCGA-HE-A5NI-01 3 124536482 124536482 T A ITGB5 Missense_Mutation p.I372F 0.55 deleterious(0.03) possibly_damaging(0.799) TCGA-HE-A5NI-01 3 129200472 129200472 G C IFT122 Missense_Mutation p.A581P 0.48 deleterious(0) probably_damaging(1) TCGA-HE-A5NI-01 3 13671374 13671374 A G FBLN2 Missense_Mutation p.N966S 0.19 deleterious(0) probably_damaging(0.999) TCGA-HE-A5NI-01 3 137790541 137790541 G A DZIP1L Missense_Mutation p.A520V 0.59 tolerated(1) benign(0.002) TCGA-HE-A5NI-01 3 186445075 186445075 A C KNG1 Missense_Mutation p.N205T 0.32 deleterious(0) probably_damaging(0.996) TCGA-HE-A5NI-01 3 196214285 196214286 - T RNF168 Frame_Shift_Ins p.L182Afs*4 0.33 TCGA-HE-A5NI-01 3 30713426 30713426 G A TGFBR2 Missense_Mutation p.G276R 0.26 deleterious(0) probably_damaging(1) TCGA-HE-A5NI-01 3 31705657 31705657 G A OSBPL10 Missense_Mutation p.R722W 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-HE-A5NI-01 3 3182301 3182309 CAGAGATCT - TRNT1 In_Frame_Del p.R151_L153del 0.30 TCGA-HE-A5NI-01 3 32915387 32915387 C A TRIM71 Missense_Mutation p.S310R 0.20 tolerated(0.29) benign(0.125) TCGA-HE-A5NI-01 3 53220041 53220041 A T PRKCD Nonsense_Mutation p.K362* 0.52 TCGA-HE-A5NI-01 3 56667344 56667344 C G FAM208A Missense_Mutation p.V1159L 0.54 tolerated(0.37) benign(0.001) TCGA-HE-A5NI-01 3 69247894 69247894 T C FRMD4B Missense_Mutation p.Y303C 0.62 deleterious(0) probably_damaging(0.975) TCGA-HE-A5NI-01 4 153690653 153690653 G C TIGD4 Missense_Mutation p.L502V 0.25 tolerated(0.14) benign(0.009) TCGA-HE-A5NI-01 4 170913188 170913189 - A MFAP3L Frame_Shift_Ins p.R191* 0.22 TCGA-HE-A5NI-01 4 39460103 39460103 T C RPL9 5'UTR 0.41 TCGA-HE-A5NI-01 5 102203043 102203044 TG A PAM Frame_Shift_Del p.D53Ifs*37 0.23 TCGA-HE-A5NI-01 5 134086648 134086648 A G CAMLG 3'UTR 0.29 TCGA-HE-A5NI-01 5 142281511 142281511 C A ARHGAP26 Missense_Mutation p.F203L 0.04 deleterious(0.02) benign(0.418) TCGA-HE-A5NI-01 5 40852818 40852818 T C CARD6 Missense_Mutation p.Y462H 0.44 tolerated(0.82) benign(0.001) TCGA-HE-A5NI-01 5 80037368 80037368 G C MSH3 Splice_Site p.X551_splice 0.33 TCGA-HE-A5NI-01 6 10931696 10931696 A G SYCP2L Missense_Mutation p.S553G 0.35 tolerated(0.06) benign(0.054) TCGA-HE-A5NI-01 6 118881386 118881386 C T PLN 3'UTR 0.41 TCGA-HE-A5NI-01 6 119245294 119245294 T C MCM9 Splice_Site p.X102_splice 0.39 TCGA-HE-A5NI-01 6 167435950 167435950 C A FGFR1OP Silent p.P211P 0.27 TCGA-HE-A5NI-01 6 24450018 24450018 T C GPLD1 Missense_Mutation p.K482R 0.45 tolerated(0.61) benign(0.009) TCGA-HE-A5NI-01 6 32169043 32169043 C T NOTCH4 Silent p.R1330R 0.37 TCGA-HE-A5NI-01 6 34664262 34664262 T C C6orf106 Missense_Mutation p.N40S 0.15 tolerated(0.27) benign(0.034) TCGA-HE-A5NI-01 6 56501422 56501422 C T DST Nonsense_Mutation p.W461* 0.56 TCGA-HE-A5NI-01 6 84872967 84872967 T G KIAA1009 Missense_Mutation p.E803A 0.31 deleterious(0) probably_damaging(0.999) TCGA-HE-A5NI-01 6 87943085 87943085 T A ZNF292 Missense_Mutation p.M194K 0.28 deleterious(0) probably_damaging(0.995) TCGA-HE-A5NI-01 6 89793801 89793801 T C PNRC1 Silent p.P290P 0.40 TCGA-HE-A5NI-01 7 154862732 154862732 G T HTR5A Silent p.V41V 0.40 TCGA-HE-A5NI-01 7 63537955 63537955 A T ZNF727 Missense_Mutation p.E176D 0.56 tolerated(0.07) probably_damaging(0.931) TCGA-HE-A5NI-01 7 73249148 73249148 A C WBSCR27 Silent p.S221S 0.36 TCGA-HE-A5NI-01 8 75274164 75274164 A - GDAP1 Frame_Shift_Del p.N178Tfs*28 0.32 TCGA-HE-A5NI-01 9 114332439 114332440 CA G PTGR1 Frame_Shift_Del p.V271Sfs*14 0.14 TCGA-HE-A5NI-01 9 125797664 125797664 G T GPR21 Missense_Mutation p.L273F 0.36 deleterious(0.01) possibly_damaging(0.513) TCGA-HE-A5NI-01 9 127963033 127963033 T A RABEPK 5'UTR 0.37 TCGA-HE-A5NI-01 9 131386741 131386741 G A SPTAN1 Silent p.K1989K 0.42 TCGA-HE-A5NI-01 9 19435060 19435060 C T ACER2 Silent p.L161L 0.24 TCGA-HE-A5NI-01 9 32450343 32450343 A C ACO1 3'UTR 0.27 TCGA-HE-A5NI-01 9 97081337 97081337 C A NUTM2F Nonsense_Mutation p.G561* 0.40 TCGA-HE-A5NI-01 X 110654011 110654011 C T DCX Silent p.P64P 0.77 TCGA-HE-A5NI-01 X 150869380 150869380 C - PRRG3 Frame_Shift_Del p.S193Pfs*5 0.47 TCGA-HE-A5NI-01 X 1714402 1714402 G A AKAP17A Silent p.E296E 0.82 TCGA-HE-A5NI-01 X 1714403 1714403 G A AKAP17A Missense_Mutation p.E297K 0.83 tolerated(0.06) unknown(0) TCGA-HE-A5NI-01 X 48650855 48650855 A - GATA1 Frame_Shift_Del p.I242Sfs*7 0.44 TCGA-HE-A5NJ-01 10 104416093 104416093 C A TRIM8 Missense_Mutation p.F333L 0.44 tolerated_low_confidence(0.21) benign(0.084) TCGA-HE-A5NJ-01 10 46282636 46282644 GAGGCCGGT - FAM21C In_Frame_Del p.E989_G991del 0.54 TCGA-HE-A5NJ-01 10 69959137 69959137 C T MYPN Missense_Mutation p.P1100S 0.36 deleterious(0) probably_damaging(1) TCGA-HE-A5NJ-01 11 128936739 128936739 T A ARHGAP32 Missense_Mutation p.S172C 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-HE-A5NJ-01 11 94113422 94113422 T A GPR83 Missense_Mutation p.N389Y 0.44 tolerated(0.19) benign(0.002) TCGA-HE-A5NJ-01 11 94340737 94340737 A G PIWIL4 Missense_Mutation p.I591V 0.40 tolerated(1) benign(0.019) TCGA-HE-A5NJ-01 12 100453199 100453199 C G UHRF1BP1L Missense_Mutation p.R619P 0.23 tolerated(0.09) probably_damaging(0.956) TCGA-HE-A5NJ-01 12 100707272 100707272 A T SCYL2 Missense_Mutation p.N309Y 0.25 deleterious(0.05) benign(0.378) TCGA-HE-A5NJ-01 12 105519813 105519813 A G KIAA1033 Missense_Mutation p.N273S 0.25 tolerated(0.73) benign(0.048) TCGA-HE-A5NJ-01 12 110565896 110565896 C T IFT81 Nonsense_Mutation p.R64* 0.30 TCGA-HE-A5NJ-01 12 64827226 64827226 C A XPOT Missense_Mutation p.F765L 0.57 deleterious(0.01) possibly_damaging(0.504) TCGA-HE-A5NJ-01 13 53624827 53624827 C A OLFM4 Missense_Mutation p.P485H 0.56 deleterious(0) probably_damaging(0.999) TCGA-HE-A5NJ-01 14 57960296 57960296 T A C14orf105 Silent p.S46S 0.45 TCGA-HE-A5NJ-01 14 73712877 73712877 T G PAPLN Missense_Mutation p.Y110D 0.31 deleterious(0) possibly_damaging(0.805) TCGA-HE-A5NJ-01 14 94780584 94780584 A T SERPINA6 Missense_Mutation p.D134E 0.38 tolerated(0.1) possibly_damaging(0.668) TCGA-HE-A5NJ-01 15 41669495 41669495 C T NUSAP1 Nonsense_Mutation p.Q409* 0.35 TCGA-HE-A5NJ-01 15 45491143 45491143 G T SHF Missense_Mutation p.H44N 0.50 tolerated_low_confidence(0.08) benign(0.107) TCGA-HE-A5NJ-01 15 75499667 75499667 C T C15orf39 Silent p.C426C 0.43 TCGA-HE-A5NJ-01 16 21051260 21051260 C A DNAH3 Missense_Mutation p.L1548F 0.25 deleterious(0) probably_damaging(1) TCGA-HE-A5NJ-01 16 3901001 3901001 G A CREBBP Missense_Mutation p.S32L 0.28 possibly_damaging(0.562) TCGA-HE-A5NJ-01 16 4908004 4908004 C T UBN1 Missense_Mutation p.S88L 0.29 tolerated(0.41) benign(0.002) TCGA-HE-A5NJ-01 16 84094306 84094306 G C MBTPS1 Silent p.V895V 0.44 TCGA-HE-A5NJ-01 16 87445209 87445209 T A ZCCHC14 Missense_Mutation p.S903C 0.35 deleterious(0.01) unknown(0) TCGA-HE-A5NJ-01 17 10366950 10366950 T G MYH4 Missense_Mutation p.E220A 0.78 deleterious(0) probably_damaging(1) TCGA-HE-A5NJ-01 17 37373422 37373422 G A STAC2 Silent p.N134N 0.52 TCGA-HE-A5NJ-01 17 7497319 7497319 T G FXR2 Missense_Mutation p.M342L 0.29 tolerated(0.24) benign(0.014) TCGA-HE-A5NJ-01 18 56033337 56033337 G C NEDD4L Missense_Mutation p.R647T 0.05 deleterious(0) probably_damaging(0.993) TCGA-HE-A5NJ-01 19 11350388 11350388 C T C19orf80 Silent p.G25G 0.46 TCGA-HE-A5NJ-01 19 14150421 14150421 G A IL27RA Missense_Mutation p.G107D 0.32 tolerated(0.07) possibly_damaging(0.698) TCGA-HE-A5NJ-01 19 17322846 17322846 G A MYO9B 3'UTR 0.63 TCGA-HE-A5NJ-01 19 2915555 2915555 C T ZNF57 Silent p.F13F 0.44 TCGA-HE-A5NJ-01 19 3543941 3543941 T C C19orf71 Missense_Mutation p.V188A 0.34 tolerated(0.46) benign(0) TCGA-HE-A5NJ-01 19 3543943 3543943 C T C19orf71 Silent p.L189L 0.35 TCGA-HE-A5NJ-01 19 3808936 3808936 G A ZFR2 Missense_Mutation p.P827S 0.44 deleterious(0.03) possibly_damaging(0.734) TCGA-HE-A5NJ-01 19 44471195 44471195 G C ZNF221 Missense_Mutation p.R514T 0.30 tolerated(0.22) possibly_damaging(0.643) TCGA-HE-A5NJ-01 1 11863251 11863251 C A MTHFR 5'UTR 0.50 TCGA-HE-A5NJ-01 1 149872302 149872302 T A BOLA1 3'Flank 0.38 TCGA-HE-A5NJ-01 1 152127305 152127305 C T RPTN Missense_Mutation p.R757Q 0.41 tolerated(1) benign(0.001) TCGA-HE-A5NJ-01 1 154108401 154108401 T C NUP210L Missense_Mutation p.R300G 0.31 tolerated(0.39) benign(0.142) TCGA-HE-A5NJ-01 1 161094363 161094363 T C NIT1 3'Flank 0.40 TCGA-HE-A5NJ-01 1 201123024 201123024 C T TMEM9 Missense_Mutation p.V10I 0.35 tolerated(0.12) benign(0.001) TCGA-HE-A5NJ-01 1 27106015 27106015 C - ARID1A Frame_Shift_Del p.P1876Qfs*7 0.30 TCGA-HE-A5NJ-01 1 43739036 43739036 A G TMEM125 Missense_Mutation p.I215V 0.53 tolerated(0.35) probably_damaging(0.949) TCGA-HE-A5NJ-01 1 51578193 51578193 G C C1orf185 Missense_Mutation p.G25A 0.50 tolerated(0.17) probably_damaging(0.999) TCGA-HE-A5NJ-01 1 93297634 93297634 C G RPL5 5'UTR 0.32 TCGA-HE-A5NJ-01 22 19709430 19709430 C T SEPT5 Silent p.C300C 0.37 TCGA-HE-A5NJ-01 22 30416249 30416249 C T MTMR3 Silent p.C867C 0.41 TCGA-HE-A5NJ-01 22 41922199 41922199 G A POLR3H 3'UTR 0.43 TCGA-HE-A5NJ-01 2 148676153 148676153 A G ACVR2A Missense_Mutation p.I318M 0.38 deleterious(0) possibly_damaging(0.9) TCGA-HE-A5NJ-01 2 235949726 235949726 C G SH3BP4 Missense_Mutation p.P105A 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-HE-A5NJ-01 2 27858007 27858007 G A GPN1 Missense_Mutation p.A158T 0.40 deleterious(0) probably_damaging(0.938) TCGA-HE-A5NJ-01 2 73836707 73836707 C T ALMS1 Nonsense_Mutation p.Q4158* 0.27 TCGA-HE-A5NJ-01 2 89156866 89156866 T A IGKC 3'UTR 0.42 TCGA-HE-A5NJ-01 3 151155196 151155196 T G IGSF10 Missense_Mutation p.S2385R 0.51 tolerated(0.29) benign(0.21) TCGA-HE-A5NJ-01 3 4859771 4859771 G A ITPR1 Missense_Mutation p.E2610K 0.35 deleterious(0.01) benign(0.173) TCGA-HE-A5NJ-01 3 57144293 57144293 C - IL17RD Frame_Shift_Del p.K119Nfs*10 0.31 TCGA-HE-A5NJ-01 3 9406849 9406849 G A THUMPD3 Missense_Mutation p.E33K 0.41 tolerated_low_confidence(0.33) benign(0.004) TCGA-HE-A5NJ-01 4 111397929 111397929 G A ENPEP Missense_Mutation p.S120N 0.27 tolerated(0.43) benign(0.008) TCGA-HE-A5NJ-01 4 70146322 70146322 A T UGT2B28 Missense_Mutation p.H35L 0.42 deleterious(0.02) benign(0.107) TCGA-HE-A5NJ-01 5 10263419 10263419 G A CCT5 Silent p.G497G 0.40 TCGA-HE-A5NJ-01 5 127477532 127477532 T A SLC12A2 Silent p.V544V 0.37 TCGA-HE-A5NJ-01 5 149361289 149361289 T C SLC26A2 Silent p.S711S 0.41 TCGA-HE-A5NJ-01 5 176931879 176931879 G A DOK3 Silent p.A226A 0.15 TCGA-HE-A5NJ-01 5 71739709 71739709 C T ZNF366 Silent p.R703R 0.32 TCGA-HE-A5NJ-01 6 160467594 160467594 G C IGF2R Missense_Mutation p.K656N 0.31 tolerated(0.21) possibly_damaging(0.799) TCGA-HE-A5NJ-01 6 43193768 43193768 C A DNPH1 Intron 0.34 TCGA-HE-A5NJ-01 6 55113587 55113587 C G HCRTR2 Missense_Mutation p.S125C 0.41 deleterious(0.05) possibly_damaging(0.617) TCGA-HE-A5NJ-01 7 103062004 103062004 C G SLC26A5 5'UTR 0.37 TCGA-HE-A5NJ-01 7 154767474 154767474 G A PAXIP1 Missense_Mutation p.R336W 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HE-A5NJ-01 7 16255771 16255771 G C ISPD Missense_Mutation p.L391V 0.57 tolerated(0.08) benign(0.027) TCGA-HE-A5NJ-01 7 75183809 75183809 C T HIP1 Silent p.T660T 0.60 TCGA-HE-A5NJ-01 7 80302113 80302113 A T CD36 Nonsense_Mutation p.K385* 0.65 TCGA-HE-A5NJ-01 8 117782585 117782585 C T UTP23 Missense_Mutation p.H115Y 0.35 deleterious(0) probably_damaging(0.934) TCGA-HE-A5NJ-01 8 145668588 145668588 C G TONSL Missense_Mutation p.R127S 0.31 tolerated(0.39) benign(0.014) TCGA-HE-A5NJ-01 8 52359698 52359698 T A PXDNL Missense_Mutation p.Q464L 0.40 deleterious(0.03) benign(0.002) TCGA-HE-A5NJ-01 8 53555097 53555097 T G RB1CC1 Missense_Mutation p.K1384T 0.43 tolerated(0.06) benign(0.064) TCGA-HE-A5NJ-01 8 8235300 8235300 A G SGK223 Missense_Mutation p.F207L 0.48 benign(0.152) TCGA-HE-A5NJ-01 9 100128909 100128909 C T CCDC180 Silent p.C1416C 0.37 TCGA-HE-A5NJ-01 9 97082579 97082579 G A NUTM2F Nonsense_Mutation p.Q427* 0.35 TCGA-HE-A5NJ-01 X 24750526 24750526 T A POLA1 Missense_Mutation p.L570M 0.86 tolerated(0.25) possibly_damaging(0.612) TCGA-HE-A5NJ-01 X 68748896 68748896 C T FAM155B Missense_Mutation p.R308C 0.87 deleterious(0.01) benign(0.437) TCGA-HE-A5NK-01 10 103917872 103917872 G A NOLC1 Missense_Mutation p.D170N 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-HE-A5NK-01 10 50723341 50723341 A - ERCC6-PGBD3 3'UTR 0.12 TCGA-HE-A5NK-01 11 101832493 101832493 C G KIAA1377 Missense_Mutation p.Q243E 0.19 tolerated(0.08) possibly_damaging(0.544) TCGA-HE-A5NK-01 11 44640770 44640770 A G CD82 3'UTR 0.25 TCGA-HE-A5NK-01 11 6261868 6261868 G C CNGA4 Missense_Mutation p.D282H 0.17 deleterious(0) probably_damaging(0.919) TCGA-HE-A5NK-01 11 6561201 6561201 C - DNHD1 Frame_Shift_Del p.F1172Lfs*27 0.10 TCGA-HE-A5NK-01 11 66288590 66288590 T A BBS1 Intron 0.19 TCGA-HE-A5NK-01 11 66384484 66384484 T C RBM14-RBM4 Missense_Mutation p.L98P 0.12 deleterious(0.02) possibly_damaging(0.836) TCGA-HE-A5NK-01 11 6789370 6789370 G T OR2AG2 Silent p.I273I 0.18 TCGA-HE-A5NK-01 11 67933292 67933292 A G SUV420H1 Intron 0.15 TCGA-HE-A5NK-01 11 69625251 69625251 C T FGF3 Missense_Mutation p.R181H 0.06 deleterious(0) probably_damaging(0.999) TCGA-HE-A5NK-01 11 77301546 77301546 A G AQP11 Missense_Mutation p.E170G 0.19 deleterious(0) probably_damaging(1) TCGA-HE-A5NK-01 11 95712439 95712440 - T MAML2 Frame_Shift_Ins p.N1048Kfs*14 0.20 TCGA-HE-A5NK-01 12 123342922 123342922 G A HIP1R Missense_Mutation p.A664T 0.23 tolerated(0.3) benign(0.085) TCGA-HE-A5NK-01 12 2763057 2763057 C T CACNA1C Silent p.I1425I 0.25 TCGA-HE-A5NK-01 12 71002988 71002988 G A PTPRB Silent p.T280T 0.20 TCGA-HE-A5NK-01 12 9242617 9242617 T A A2M Missense_Mutation p.N867Y 0.20 deleterious(0.03) benign(0.014) TCGA-HE-A5NK-01 13 41791352 41791352 C T MTRF1 Missense_Mutation p.G413S 0.22 deleterious(0.02) probably_damaging(0.917) TCGA-HE-A5NK-01 14 23776985 23776985 C A BCL2L2-PABPN1 Silent p.T3T 0.32 TCGA-HE-A5NK-01 14 51132105 51132106 CT - SAV1 Frame_Shift_Del p.E109Vfs*12 0.19 TCGA-HE-A5NK-01 15 43817788 43817788 A G MAP1A Missense_Mutation p.T1373A 0.32 benign(0.005) TCGA-HE-A5NK-01 15 90233917 90233917 G T PEX11A 5'UTR 0.11 TCGA-HE-A5NK-01 16 19548820 19548820 A T CCP110 Missense_Mutation p.E610V 0.16 deleterious(0.05) possibly_damaging(0.608) TCGA-HE-A5NK-01 16 19548822 19548822 C A CCP110 Missense_Mutation p.Q611K 0.17 deleterious(0.01) benign(0.173) TCGA-HE-A5NK-01 16 30666137 30666137 G A PRR14 Silent p.L282L 0.16 TCGA-HE-A5NK-01 16 31374006 31374006 G C ITGAX Missense_Mutation p.G431R 0.22 deleterious(0.02) probably_damaging(1) TCGA-HE-A5NK-01 17 40344519 40344519 A - GHDC Frame_Shift_Del p.F210Sfs*11 0.08 TCGA-HE-A5NK-01 17 41004649 41004649 G A AOC3 Missense_Mutation p.C430Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-HE-A5NK-01 17 53485137 53485138 - AG MMD Frame_Shift_Ins p.Y105Sfs*13 0.17 TCGA-HE-A5NK-01 17 57746160 57746160 C T CLTC Silent p.S717S 0.12 TCGA-HE-A5NK-01 17 61616010 61616010 C G KCNH6 Silent p.V647V 0.20 TCGA-HE-A5NK-01 17 7257279 7257279 T C KCTD11 3'UTR 0.10 TCGA-HE-A5NK-01 17 78350139 78350141 GAT - RNF213 In_Frame_Del p.K4408_I4409delinsN 0.13 TCGA-HE-A5NK-01 17 7990699 7990699 G C ALOX12B Missense_Mutation p.S21C 0.21 tolerated(0.08) benign(0.009) TCGA-HE-A5NK-01 19 11408999 11408999 G A TSPAN16 Missense_Mutation p.R84K 0.20 tolerated(0.08) probably_damaging(0.999) TCGA-HE-A5NK-01 19 19371725 19371725 G A HAPLN4 Silent p.S127S 0.23 TCGA-HE-A5NK-01 19 2210830 2210830 C T DOT1L Nonsense_Mutation p.Q443* 0.22 TCGA-HE-A5NK-01 19 35500151 35500151 A C GRAMD1A Missense_Mutation p.D46A 0.15 deleterious(0.01) possibly_damaging(0.857) TCGA-HE-A5NK-01 19 45973822 45973822 G T FOSB Intron 0.21 TCGA-HE-A5NK-01 19 50473100 50473100 T A SIGLEC16 RNA 0.22 TCGA-HE-A5NK-01 19 58438722 58438722 T A ZNF418 Missense_Mutation p.H276L 0.20 deleterious(0) benign(0.21) TCGA-HE-A5NK-01 1 156517916 156517917 AG - IQGAP3 Frame_Shift_Del p.A751Gfs*24 0.19 TCGA-HE-A5NK-01 1 15956933 15956933 T G DDI2 Missense_Mutation p.S128A 0.28 tolerated(0.41) benign(0.002) TCGA-HE-A5NK-01 1 160786562 160786562 A C LY9 Missense_Mutation p.R417S 0.25 tolerated(0.08) benign(0.304) TCGA-HE-A5NK-01 1 169446750 169446750 G A SLC19A2 Silent p.D150D 0.30 TCGA-HE-A5NK-01 1 181701628 181701628 G A CACNA1E Silent p.A802A 0.13 TCGA-HE-A5NK-01 1 227172964 227172964 G A ADCK3 Missense_Mutation p.A528T 0.29 deleterious(0) probably_damaging(0.91) TCGA-HE-A5NK-01 1 23696043 23696043 A C C1orf213 Silent p.R85R 0.26 TCGA-HE-A5NK-01 1 240370577 240370577 A T FMN2 Missense_Mutation p.Q822L 0.27 unknown(0) TCGA-HE-A5NK-01 1 78414969 78414969 A G FUBP1 Silent p.A599A 0.19 TCGA-HE-A5NK-01 1 89449426 89449426 A - RBMXL1 Frame_Shift_Del p.F28Lfs*7 0.14 TCGA-HE-A5NK-01 1 90179188 90179188 T C LRRC8C Silent p.Y353Y 0.24 TCGA-HE-A5NK-01 20 1146775 1146775 C T PSMF1 3'UTR 0.20 TCGA-HE-A5NK-01 20 23546696 23546696 T G CST9L Missense_Mutation p.E90A 0.20 tolerated(0.06) possibly_damaging(0.796) TCGA-HE-A5NK-01 20 37356957 37356957 T C SLC32A1 Missense_Mutation p.F418S 0.22 deleterious(0.01) benign(0.259) TCGA-HE-A5NK-01 20 37653978 37653978 C T DHX35 Nonsense_Mutation p.Q593* 0.19 TCGA-HE-A5NK-01 20 4681051 4681051 G T PRNP 3'UTR 0.15 TCGA-HE-A5NK-01 20 48431566 48431566 T C SLC9A8 Silent p.H16H 0.23 TCGA-HE-A5NK-01 22 22782289 22782289 A C IGLV5-37 Missense_Mutation p.N96T 0.22 deleterious(0.02) possibly_damaging(0.504) TCGA-HE-A5NK-01 22 24656987 24656987 A G POM121L9P RNA 0.10 TCGA-HE-A5NK-01 22 25006253 25006253 A G GGT1 5'UTR 0.35 TCGA-HE-A5NK-01 22 26422672 26422672 C T MYO18B Silent p.P2244P 0.18 TCGA-HE-A5NK-01 22 40367067 40367067 C T GRAP2 Silent p.Y324Y 0.25 TCGA-HE-A5NK-01 22 45785629 45785629 G C SMC1B Missense_Mutation p.A565G 0.20 tolerated(0.21) benign(0.16) TCGA-HE-A5NK-01 22 45785630 45785630 C T SMC1B Missense_Mutation p.A565T 0.21 tolerated(0.07) possibly_damaging(0.856) TCGA-HE-A5NK-01 22 51159826 51159826 G A SHANK3 Missense_Mutation p.E1205K 0.18 benign(0.191) TCGA-HE-A5NK-01 2 152426612 152426612 A T NEB Missense_Mutation p.Y5805N 0.21 probably_damaging(1) TCGA-HE-A5NK-01 2 198949559 198949559 C G PLCL1 Missense_Mutation p.R440G 0.22 deleterious(0) probably_damaging(1) TCGA-HE-A5NK-01 2 211471605 211471605 G T CPS1 Missense_Mutation p.C717F 0.19 tolerated(0.12) possibly_damaging(0.467) TCGA-HE-A5NK-01 2 213872649 213872649 T C IKZF2 Missense_Mutation p.H339R 0.19 tolerated(0.85) probably_damaging(0.989) TCGA-HE-A5NK-01 2 220075010 220075010 C A ABCB6 Missense_Mutation p.V788L 0.16 deleterious(0.01) benign(0.325) TCGA-HE-A5NK-01 2 220075011 220075011 A G ABCB6 Silent p.T787T 0.16 TCGA-HE-A5NK-01 2 223919463 223919463 G C KCNE4 3'UTR 0.16 TCGA-HE-A5NK-01 2 233428989 233428989 G T EIF4E2 Missense_Mutation p.M101I 0.19 tolerated(0.11) benign(0.034) TCGA-HE-A5NK-01 2 98907042 98907042 G A VWA3B Silent p.Q1038Q 0.16 TCGA-HE-A5NK-01 3 121649781 121649781 A G SLC15A2 Missense_Mutation p.T550A 0.15 tolerated(0.93) benign(0.001) TCGA-HE-A5NK-01 3 124748131 124748131 C T HEG1 Missense_Mutation p.S173N 0.23 tolerated_low_confidence(1) benign(0) TCGA-HE-A5NK-01 3 130095526 130095526 G T COL6A5 Missense_Mutation p.A172S 0.13 tolerated(0.13) possibly_damaging(0.792) TCGA-HE-A5NK-01 3 14183165 14183165 C T TMEM43 Missense_Mutation p.S358L 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-HE-A5NK-01 3 176771657 176771657 C G TBL1XR1 Missense_Mutation p.Q36H 0.04 deleterious(0.05) benign(0.029) TCGA-HE-A5NK-01 3 183381404 183381404 C A KLHL24 Missense_Mutation p.A360D 0.10 deleterious(0.01) possibly_damaging(0.493) TCGA-HE-A5NK-01 3 183476664 183476664 A - YEATS2 Frame_Shift_Del p.K523Rfs*25 0.12 TCGA-HE-A5NK-01 3 183547301 183547301 G T PARL 3'UTR 0.13 TCGA-HE-A5NK-01 3 47718172 47718172 C A SMARCC1 Missense_Mutation p.V558L 0.14 deleterious(0.01) possibly_damaging(0.844) TCGA-HE-A5NK-01 3 48604393 48604393 C A COL7A1 Missense_Mutation p.G2725W 0.18 probably_damaging(1) TCGA-HE-A5NK-01 3 49718019 49718019 T C APEH Missense_Mutation p.L419P 0.25 deleterious(0) probably_damaging(0.971) TCGA-HE-A5NK-01 3 53844325 53844325 A - CACNA1D Frame_Shift_Del p.V2085Sfs*2 0.15 TCGA-HE-A5NK-01 3 73114918 73114919 TT - PPP4R2 3'UTR 0.16 TCGA-HE-A5NK-01 4 120528177 120528177 T A PDE5A Missense_Mutation p.H143L 0.10 tolerated(0.81) benign(0.001) TCGA-HE-A5NK-01 4 149356416 149356416 T C NR3C2 Missense_Mutation p.I533V 0.26 tolerated(0.1) benign(0.141) TCGA-HE-A5NK-01 4 164061509 164061509 T C NAF1 Silent p.A248A 0.13 TCGA-HE-A5NK-01 4 47938977 47938977 T - CNGA1 Frame_Shift_Del p.I581Sfs*27 0.12 TCGA-HE-A5NK-01 4 6718828 6718828 C A BLOC1S4 3'UTR 0.17 TCGA-HE-A5NK-01 4 85716095 85716095 G T WDFY3 Missense_Mutation p.P1069T 0.26 tolerated(0.28) benign(0.005) TCGA-HE-A5NK-01 4 98893529 98893529 T C STPG2 Missense_Mutation p.K279E 0.19 tolerated(0.6) benign(0.022) TCGA-HE-A5NK-01 5 114603580 114603581 - TT CCDC112 Frame_Shift_Ins p.R528Kfs*12 0.12 TCGA-HE-A5NK-01 5 149678111 149678111 G C ARSI Missense_Mutation p.L126V 0.03 deleterious(0.03) benign(0.41) TCGA-HE-A5NK-01 5 170814857 170814857 C T NPM1 5'UTR 0.35 TCGA-HE-A5NK-01 5 37121780 37121780 A G C5orf42 Silent p.L2988L 0.34 TCGA-HE-A5NK-01 5 72864379 72864379 T A UTP15 Silent p.L106L 0.17 TCGA-HE-A5NK-01 6 135260502 135260502 A G ALDH8A1 Missense_Mutation p.I165T 0.13 tolerated(0.07) possibly_damaging(0.794) TCGA-HE-A5NK-01 6 155154048 155154048 G A SCAF8 Missense_Mutation p.G1112D 0.19 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-HE-A5NK-01 6 161071523 161071523 G T LPA Missense_Mutation p.P19H 0.16 tolerated_low_confidence(0.11) possibly_damaging(0.858) TCGA-HE-A5NK-01 6 43273731 43273731 T C CRIP3 Intron 0.18 TCGA-HE-A5NK-01 6 49936558 49936558 T C DEFB113 Silent p.E27E 0.17 TCGA-HE-A5NK-01 6 51750667 51750667 G T PKHD1 Missense_Mutation p.Q2405K 0.22 tolerated(0.07) benign(0.075) TCGA-HE-A5NK-01 6 70926682 70926682 G T COL9A1 Missense_Mutation p.P895H 0.25 probably_damaging(0.982) TCGA-HE-A5NK-01 7 128119287 128119287 G T METTL2B Missense_Mutation p.R93I 0.14 deleterious(0) probably_damaging(1) TCGA-HE-A5NK-01 7 142880641 142880641 G A TAS2R39 Missense_Mutation p.E44K 0.07 deleterious(0.01) probably_damaging(0.98) TCGA-HE-A5NK-01 7 149430813 149430813 C G KRBA1 Missense_Mutation p.P923A 0.19 tolerated(0.29) probably_damaging(0.932) TCGA-HE-A5NK-01 7 150069172 150069172 C A REPIN1 Nonsense_Mutation p.S338* 0.16 TCGA-HE-A5NK-01 7 35923576 35923576 T A SEPT7 Missense_Mutation p.Y268N 0.19 deleterious(0) probably_damaging(1) TCGA-HE-A5NK-01 7 64363665 64363665 T - ZNF273 5'UTR 0.22 TCGA-HE-A5NK-01 7 91631221 91631221 A T AKAP9 Nonsense_Mutation p.K664* 0.12 TCGA-HE-A5NK-01 8 11643896 11643896 T C NEIL2 3'UTR 0.15 TCGA-HE-A5NK-01 8 117661151 117661151 T G EIF3H Missense_Mutation p.K241T 0.24 deleterious(0.04) probably_damaging(0.962) TCGA-HE-A5NK-01 8 17612803 17612803 A G MTUS1 Missense_Mutation p.F172L 0.16 deleterious(0.04) possibly_damaging(0.513) TCGA-HE-A5NK-01 8 41794945 41794945 A T KAT6A Missense_Mutation p.L1061I 0.20 probably_damaging(0.909) TCGA-HE-A5NK-01 8 42407853 42407853 T G SMIM19 3'UTR 0.36 TCGA-HE-A5NK-01 8 87423961 87423961 G C WWP1 Missense_Mutation p.A307P 0.16 tolerated(0.18) benign(0.001) TCGA-HE-A5NK-01 9 133342187 133342187 G C ASS1 Splice_Site p.X165_splice 0.13 TCGA-HE-A5NK-01 9 139744582 139744582 A G PHPT1 Missense_Mutation p.Y93C 0.17 deleterious(0) probably_damaging(0.999) TCGA-HE-A5NK-01 9 19126158 19126158 C A PLIN2 Silent p.V60V 0.19 TCGA-HE-A5NK-01 9 66553532 66553532 G C RP11-262H14.4 RNA 0.17 TCGA-HE-A5NK-01 9 88233969 88233969 C G AGTPBP1 Missense_Mutation p.G715A 0.20 tolerated(0.06) benign(0.181) TCGA-HE-A5NK-01 X 115594139 115594139 G C CT83 5'UTR 0.33 TCGA-HE-A5NK-01 X 50658965 50658965 C T BMP15 Silent p.N179N 0.35 TCGA-HE-A5NK-01 X 77913359 77913359 G A ZCCHC5 Missense_Mutation p.P187S 0.40 tolerated(0.27) benign(0.001) TCGA-HE-A5NL-01 10 102732583 102732583 T C SEMA4G 5'Flank 0.33 TCGA-HE-A5NL-01 10 117075179 117075179 G A ATRNL1 Silent p.E990E 0.29 TCGA-HE-A5NL-01 10 27529275 27529275 T G ACBD5 Missense_Mutation p.K52Q 0.30 deleterious(0) probably_damaging(0.979) TCGA-HE-A5NL-01 11 105925034 105925034 A T KBTBD3 Missense_Mutation p.L128M 0.32 tolerated(0.23) benign(0.052) TCGA-HE-A5NL-01 11 124623587 124623587 C T ESAM Silent p.V376V 0.08 TCGA-HE-A5NL-01 11 1264092 1264092 C T MUC5B Silent p.R1994R 0.30 TCGA-HE-A5NL-01 11 132180102 132180102 T C NTM Missense_Mutation p.F253S 0.29 deleterious(0) probably_damaging(0.997) TCGA-HE-A5NL-01 11 19890497 19890497 T A NAV2 Missense_Mutation p.N155K 0.30 deleterious(0) possibly_damaging(0.479) TCGA-HE-A5NL-01 11 22759307 22759307 G A GAS2 Missense_Mutation p.A156T 0.29 deleterious(0.02) possibly_damaging(0.461) TCGA-HE-A5NL-01 11 35492269 35492269 C A PAMR1 Missense_Mutation p.V198F 0.05 tolerated(1) benign(0.001) TCGA-HE-A5NL-01 11 57182446 57182446 G C SLC43A3 Missense_Mutation p.N301K 0.28 deleterious(0.03) possibly_damaging(0.461) TCGA-HE-A5NL-01 11 62343357 62343370 GTAAAGGGATCGGC - TUT1 Frame_Shift_Del p.I647Cfs*58 0.29 TCGA-HE-A5NL-01 11 67933433 67933433 A G SUV420H1 Intron 0.29 TCGA-HE-A5NL-01 11 72292965 72292965 C T PDE2A Missense_Mutation p.M626I 0.32 deleterious(0.01) benign(0.149) TCGA-HE-A5NL-01 11 76891503 76891503 G A MYO7A Silent p.K890K 0.31 TCGA-HE-A5NL-01 12 110341898 110341898 A T TCHP Missense_Mutation p.R115S 0.19 tolerated(0.27) benign(0.08) TCGA-HE-A5NL-01 12 74933422 74933422 C G ATXN7L3B 3'UTR 0.43 TCGA-HE-A5NL-01 13 37583387 37583387 A G EXOSC8 Missense_Mutation p.E261G 0.23 deleterious(0.02) probably_damaging(0.988) TCGA-HE-A5NL-01 13 42293875 42293875 A G VWA8 Missense_Mutation p.F990L 0.48 deleterious(0) probably_damaging(0.936) TCGA-HE-A5NL-01 14 58878635 58878635 T C TIMM9 Missense_Mutation p.Q10R 0.44 deleterious(0) possibly_damaging(0.583) TCGA-HE-A5NL-01 14 69994009 69994009 G A PLEKHD1 Silent p.E387E 0.28 TCGA-HE-A5NL-01 15 53815462 53815462 A G WDR72 Missense_Mutation p.V1069A 0.20 tolerated(0.56) benign(0) TCGA-HE-A5NL-01 15 63097959 63097959 T A TLN2 Missense_Mutation p.V2213E 0.29 deleterious(0) possibly_damaging(0.602) TCGA-HE-A5NL-01 15 66190397 66190397 G A MEGF11 Missense_Mutation p.H1004Y 0.24 tolerated(1) benign(0.023) TCGA-HE-A5NL-01 16 22291588 22291588 C T EEF2K Silent p.G653G 0.49 TCGA-HE-A5NL-01 16 27459983 27459983 G T IL21R Silent p.T332T 0.25 TCGA-HE-A5NL-01 16 57503976 57503976 G A POLR2C Silent p.G181G 0.53 TCGA-HE-A5NL-01 16 87760467 87760467 C T KLHDC4 Silent p.L221L 0.52 TCGA-HE-A5NL-01 17 1630178 1630178 C G WDR81 Missense_Mutation p.P642R 0.42 tolerated(0.43) possibly_damaging(0.724) TCGA-HE-A5NL-01 17 42744034 42744034 C T C17orf104 Missense_Mutation p.T252I 0.07 deleterious(0.04) possibly_damaging(0.474) TCGA-HE-A5NL-01 17 47781478 47781478 T A SLC35B1 Silent p.T213T 0.23 TCGA-HE-A5NL-01 17 5312151 5312152 - A NUP88 Frame_Shift_Ins p.F254Ifs*8 0.19 TCGA-HE-A5NL-01 17 66526491 66526491 G A PRKAR1A Silent p.K349K 0.03 TCGA-HE-A5NL-01 17 74076354 74076354 G T ZACN Missense_Mutation p.R131S 0.39 tolerated(0.12) benign(0.056) TCGA-HE-A5NL-01 18 59483369 59483369 G C RNF152 Missense_Mutation p.R110G 0.30 tolerated(0.42) benign(0.002) TCGA-HE-A5NL-01 19 19762514 19762515 - TGCAGGA ATP13A1 Frame_Shift_Ins p.Q773Hfs*18 0.17 TCGA-HE-A5NL-01 19 43519496 43519496 G T PSG11 Missense_Mutation p.P246T 0.45 deleterious(0.01) possibly_damaging(0.529) TCGA-HE-A5NL-01 19 53612760 53612760 T A ZNF415 Missense_Mutation p.I180L 0.32 deleterious(0.03) benign(0.033) TCGA-HE-A5NL-01 1 12837407 12837407 A T PRAMEF12 Missense_Mutation p.S373C 0.29 deleterious(0.03) probably_damaging(0.987) TCGA-HE-A5NL-01 1 148594427 148594427 G C NBPF15 Missense_Mutation p.E600D 0.20 deleterious(0.04) possibly_damaging(0.812) TCGA-HE-A5NL-01 1 159170698 159170698 G T CADM3 Nonsense_Mutation p.E429* 0.10 TCGA-HE-A5NL-01 1 16257911 16257911 G A SPEN Missense_Mutation p.D1726N 0.09 benign(0.075) TCGA-HE-A5NL-01 1 170965712 170965712 C G MROH9 Missense_Mutation p.L468V 0.23 tolerated(0.13) probably_damaging(1) TCGA-HE-A5NL-01 1 226030105 226030105 T C EPHX1 Missense_Mutation p.Y324H 0.24 deleterious(0) probably_damaging(0.992) TCGA-HE-A5NL-01 1 235872510 235872510 G A LYST Missense_Mutation p.R3342W 0.28 deleterious(0) probably_damaging(0.998) TCGA-HE-A5NL-01 1 33478681 33478681 A T AK2 3'UTR 0.40 TCGA-HE-A5NL-01 1 47685614 47685614 C G TAL1 Missense_Mutation p.K258N 0.27 deleterious(0.03) probably_damaging(0.941) TCGA-HE-A5NL-01 20 13868446 13868446 G T SEL1L2 Silent p.A238A 0.25 TCGA-HE-A5NL-01 20 25656225 25656225 A T ZNF337 Missense_Mutation p.S567T 0.36 tolerated(1) unknown(0) TCGA-HE-A5NL-01 20 33623074 33623074 A C TRPC4AP Silent p.L301L 0.29 TCGA-HE-A5NL-01 20 33623099 33623099 C A TRPC4AP Missense_Mutation p.S293I 0.26 deleterious(0.02) benign(0.248) TCGA-HE-A5NL-01 20 44005903 44005903 C A TP53TG5 Missense_Mutation p.R68M 0.31 deleterious(0) probably_damaging(0.991) TCGA-HE-A5NL-01 20 56140806 56140806 C A PCK1 Silent p.P605P 0.32 TCGA-HE-A5NL-01 20 62366740 62366740 T A ZGPAT Silent p.P427P 0.31 TCGA-HE-A5NL-01 22 37966307 37966307 C T LGALS2 Missense_Mutation p.G121D 0.05 tolerated(0.08) possibly_damaging(0.785) TCGA-HE-A5NL-01 22 42475220 42475220 C A FAM109B 3'UTR 0.07 TCGA-HE-A5NL-01 22 44333050 44333050 G A PNPLA3 Missense_Mutation p.A293T 0.33 tolerated(0.4) benign(0.05) TCGA-HE-A5NL-01 22 50181208 50181208 G C BRD1 Intron 0.26 TCGA-HE-A5NL-01 2 113260589 113260589 A - TTL Frame_Shift_Del p.T237Pfs*4 0.21 TCGA-HE-A5NL-01 2 166152284 166152284 A G SCN2A Intron 0.21 TCGA-HE-A5NL-01 2 171705820 171705820 A - GAD1 Frame_Shift_Del p.M382Cfs*12 0.29 TCGA-HE-A5NL-01 2 216274676 216274676 G T FN1 Missense_Mutation p.S701R 0.24 tolerated(0.33) possibly_damaging(0.702) TCGA-HE-A5NL-01 2 24929447 24929447 G A NCOA1 Missense_Mutation p.G370R 0.33 tolerated(0.11) benign(0.128) TCGA-HE-A5NL-01 2 44203320 44203320 T A LRPPRC Silent p.A233A 0.29 TCGA-HE-A5NL-01 2 74642884 74642884 G A C2orf81 Silent p.P143P 0.32 TCGA-HE-A5NL-01 3 108541641 108541641 T G TRAT1 5'UTR 0.50 TCGA-HE-A5NL-01 3 150877786 150877786 C T MED12L Silent p.G335G 0.49 TCGA-HE-A5NL-01 3 33840351 33840351 A C PDCD6IP Missense_Mutation p.E44A 0.25 tolerated(0.69) benign(0.001) TCGA-HE-A5NL-01 3 56766301 56766301 C A ARHGEF3 Missense_Mutation p.G430V 0.22 deleterious(0) probably_damaging(0.997) TCGA-HE-A5NL-01 4 1164263 1164263 C A SPON2 Missense_Mutation p.Q246H 0.38 tolerated(0.27) benign(0.001) TCGA-HE-A5NL-01 4 126239108 126239108 T C FAT4 Silent p.I514I 0.38 TCGA-HE-A5NL-01 4 156137218 156137218 C T NPY2R 3'UTR 0.27 TCGA-HE-A5NL-01 4 174450317 174450317 A T HAND2 Missense_Mutation p.Y42N 0.24 deleterious(0) benign(0.19) TCGA-HE-A5NL-01 4 177056301 177056301 G A WDR17 Missense_Mutation p.D405N 0.32 tolerated(0.83) benign(0.05) TCGA-HE-A5NL-01 4 187131857 187131857 T - CYP4V2 3'UTR 0.19 TCGA-HE-A5NL-01 4 25819805 25819806 - T SEL1L3 Frame_Shift_Ins p.H507Tfs*22 0.19 TCGA-HE-A5NL-01 4 37447380 37447380 T G KIAA1239 Missense_Mutation p.F1257C 0.09 deleterious(0) probably_damaging(0.991) TCGA-HE-A5NL-01 4 39435931 39435931 G T KLB Silent p.R309R 0.32 TCGA-HE-A5NL-01 4 46043272 46043272 C T GABRG1 Splice_Site p.X378_splice 0.24 TCGA-HE-A5NL-01 4 76570830 76570830 A T G3BP2 Silent p.A411A 0.27 TCGA-HE-A5NL-01 4 86916564 86916564 G A ARHGAP24 Missense_Mutation p.G586E 0.34 tolerated(0.14) possibly_damaging(0.548) TCGA-HE-A5NL-01 5 139876316 139876316 A G ANKHD1 Silent p.E819E 0.46 TCGA-HE-A5NL-01 5 150921871 150921871 G T FAT2 Missense_Mutation p.N2939K 0.29 probably_damaging(0.992) TCGA-HE-A5NL-01 5 154395501 154395501 G A KIF4B Silent p.Q694Q 0.24 TCGA-HE-A5NL-01 5 64824334 64824341 CCCAAGGT - CENPK Frame_Shift_Del p.T179Rfs*11 0.12 TCGA-HE-A5NL-01 5 98115590 98115591 GG - RGMB Frame_Shift_Del p.E190Tfs*28 0.25 TCGA-HE-A5NL-01 6 146126628 146126628 C T FBXO30 Missense_Mutation p.G305D 0.19 tolerated(0.25) benign(0.001) TCGA-HE-A5NL-01 6 83076206 83076206 G T TPBG 3'UTR 0.06 TCGA-HE-A5NL-01 6 90577520 90577520 G T CASP8AP2 RNA 0.28 TCGA-HE-A5NL-01 7 100030705 100030705 T A MEPCE Missense_Mutation p.I612N 0.23 tolerated(0.06) probably_damaging(0.972) TCGA-HE-A5NL-01 7 87037472 87037472 C T ABCB4 Missense_Mutation p.G1054R 0.20 deleterious(0) possibly_damaging(0.653) TCGA-HE-A5NL-01 7 87466048 87466048 A - SLC25A40 Frame_Shift_Del p.S301Qfs*3 0.15 TCGA-HE-A5NL-01 7 91794441 91794441 A T LRRD1 Missense_Mutation p.S26T 0.52 tolerated_low_confidence(0.14) benign(0.086) TCGA-HE-A5NL-01 7 97847037 97847037 C T TECPR1 Silent p.E1117E 0.30 TCGA-HE-A5NL-01 8 113516202 113516202 T C CSMD3 Missense_Mutation p.S1634G 0.26 deleterious(0.04) possibly_damaging(0.714) TCGA-HE-A5NL-01 8 113516207 113516207 C G CSMD3 Splice_Site p.X1632_splice 0.32 TCGA-HE-A5NL-01 8 28047190 28047190 G C ELP3 Missense_Mutation p.R531T 0.30 deleterious(0.01) benign(0.363) TCGA-HE-A5NL-01 8 67064722 67064722 T - TRIM55 Frame_Shift_Del p.P367Qfs*44 0.25 TCGA-HE-A5NL-01 9 123939512 123939512 C T CNTRL 3'UTR 0.25 TCGA-HE-A5NL-01 9 130206739 130206739 T C ZNF79 Missense_Mutation p.C254R 0.26 deleterious(0) probably_damaging(0.999) TCGA-HE-A5NL-01 9 4679685 4679685 G A CDC37L1 5'UTR 0.27 TCGA-HE-A5NL-01 X 103360313 103360314 AA - SLC25A53 Intron 0.43 TCGA-HE-A5NL-01 X 12906681 12906681 C A TLR7 Missense_Mutation p.N1018K 0.63 deleterious(0) probably_damaging(0.968) TCGA-HE-A5NL-01 X 34148836 34148836 C T FAM47A Silent p.E520E 0.67 TCGA-IA-A40U-01 10 103789497 103789497 C T C10orf76 Silent p.L104L 0.21 TCGA-IA-A40U-01 10 104173630 104173630 C A PSD Missense_Mutation p.E483D 0.34 tolerated(0.18) benign(0.017) TCGA-IA-A40U-01 10 13043327 13043327 G T CCDC3 Missense_Mutation p.L82M 0.40 deleterious(0.04) probably_damaging(0.981) TCGA-IA-A40U-01 10 50311832 50311835 GGGC - VSTM4 Intron 0.23 TCGA-IA-A40U-01 11 102563689 102563689 T G MMP27 Missense_Mutation p.D426A 0.31 deleterious(0) benign(0.401) TCGA-IA-A40U-01 11 117038364 117038364 C G PAFAH1B2 Missense_Mutation p.I213M 0.41 deleterious(0.01) possibly_damaging(0.798) TCGA-IA-A40U-01 11 14536021 14536021 C A PSMA1 Nonsense_Mutation p.E97* 0.35 TCGA-IA-A40U-01 11 71944164 71944164 G T INPPL1 Missense_Mutation p.G666V 0.42 deleterious(0) probably_damaging(0.992) TCGA-IA-A40U-01 12 114400219 114400219 T C RBM19 Missense_Mutation p.M13V 0.68 tolerated(0.33) benign(0.363) TCGA-IA-A40U-01 12 114400220 114400220 C T RBM19 Splice_Site p.X13_splice 0.69 TCGA-IA-A40U-01 12 125397655 125397655 C A UBC Silent p.L221L 0.25 TCGA-IA-A40U-01 12 21623145 21623145 T G RECQL Missense_Mutation p.K645Q 0.63 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-IA-A40U-01 12 54382989 54382989 T C HOXC10 Missense_Mutation p.L263P 0.20 deleterious(0) probably_damaging(0.928) TCGA-IA-A40U-01 12 54905823 54905823 C A NCKAP1L Missense_Mutation p.T292N 0.17 tolerated(0.11) benign(0.117) TCGA-IA-A40U-01 12 59308047 59308047 C T LRIG3 Missense_Mutation p.V103M 0.14 tolerated(0.07) benign(0.059) TCGA-IA-A40U-01 14 95670380 95670380 G A CLMN Missense_Mutation p.P436S 0.59 deleterious_low_confidence(0) benign(0.009) TCGA-IA-A40U-01 15 34525955 34525957 GAG - SLC12A6 3'UTR 0.50 TCGA-IA-A40U-01 15 75968209 75968209 G C CSPG4 Missense_Mutation p.F2217L 0.38 deleterious(0.04) benign(0.027) TCGA-IA-A40U-01 15 90030138 90030138 G A RHCG Missense_Mutation p.A88V 0.44 deleterious(0.01) possibly_damaging(0.9) TCGA-IA-A40U-01 15 91438796 91438796 A - FES 3'UTR 0.29 TCGA-IA-A40U-01 16 28354310 28354310 T - NPIPB6 Frame_Shift_Del p.N299Ifs*23 0.09 TCGA-IA-A40U-01 16 732019 732019 G T STUB1 Splice_Site p.X205_splice 0.58 TCGA-IA-A40U-01 16 74505165 74505165 A C GLG1 Missense_Mutation p.I712R 0.26 tolerated(0.48) benign(0.092) TCGA-IA-A40U-01 16 81094972 81094972 G A C16orf46 Nonsense_Mutation p.Q328* 0.27 TCGA-IA-A40U-01 17 15968952 15968952 G T NCOR1 Missense_Mutation p.Q1600K 0.26 probably_damaging(0.966) TCGA-IA-A40U-01 17 21318895 21318895 C T KCNJ12 Missense_Mutation p.R81W 0.12 deleterious(0) probably_damaging(0.998) TCGA-IA-A40U-01 17 3480482 3480482 A G SHPK Missense_Mutation p.I573T 0.48 deleterious(0) possibly_damaging(0.493) TCGA-IA-A40U-01 17 76449535 76449535 G T DNAH17 Silent p.V3459V 0.50 TCGA-IA-A40U-01 19 10132482 10132482 T A RDH8 3'UTR 0.38 TCGA-IA-A40U-01 19 39101749 39101755 ATGAAGT - MAP4K1 Frame_Shift_Del p.N249Tfs*5 0.25 TCGA-IA-A40U-01 19 59082699 59082699 C T MZF1 Missense_Mutation p.V20I 0.35 tolerated(0.49) benign(0.002) TCGA-IA-A40U-01 1 156209392 156209392 A C PMF1 Intron 0.36 TCGA-IA-A40U-01 1 248637175 248637175 A C OR2T3 Missense_Mutation p.Q175P 0.39 deleterious(0.03) benign(0.303) TCGA-IA-A40U-01 1 32205741 32205741 T G BAI2 Missense_Mutation p.E676D 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-IA-A40U-01 21 33727865 33727865 C A URB1 Missense_Mutation p.D667Y 0.74 deleterious(0) probably_damaging(0.98) TCGA-IA-A40U-01 22 24037277 24037277 T C RGL4 Intron 0.35 TCGA-IA-A40U-01 22 24057311 24057311 T C KB-1572G7.2 RNA 0.40 TCGA-IA-A40U-01 22 39814795 39814795 G A TAB1 Silent p.L203L 0.38 TCGA-IA-A40U-01 2 115200203 115200203 G C DPP10 5'UTR 0.25 TCGA-IA-A40U-01 2 206921631 206921631 G A INO80D Silent p.I85I 0.46 TCGA-IA-A40U-01 2 212248449 212248449 C T ERBB4 Missense_Mutation p.R1273Q 0.57 tolerated(0.29) benign(0.234) TCGA-IA-A40U-01 2 71376396 71376396 C T MPHOSPH10 Missense_Mutation p.T570I 0.09 deleterious(0) probably_damaging(0.988) TCGA-IA-A40U-01 2 74651108 74651108 A G WDR54 Missense_Mutation p.Q178R 0.19 tolerated(0.32) benign(0.034) TCGA-IA-A40U-01 3 140401754 140401754 G A TRIM42 Silent p.K264K 0.40 TCGA-IA-A40U-01 3 170013708 170013708 A - PRKCI Frame_Shift_Del p.K477Nfs*11 0.30 TCGA-IA-A40U-01 3 32032892 32032892 C A ZNF860 3'UTR 0.27 TCGA-IA-A40U-01 3 44778352 44778352 A G ZNF501 3'UTR 0.31 TCGA-IA-A40U-01 3 53290014 53290014 C T TKT 5'UTR 0.36 TCGA-IA-A40U-01 3 56627039 56627039 A C CCDC66 Missense_Mutation p.Q326H 0.41 tolerated(0.68) benign(0.126) TCGA-IA-A40U-01 4 126240999 126240999 G A FAT4 Missense_Mutation p.D1145N 0.30 benign(0.074) TCGA-IA-A40U-01 4 76532433 76532433 G A CDKL2 Missense_Mutation p.T159I 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-IA-A40U-01 5 102237063 102237063 G A PAM Missense_Mutation p.D72N 0.05 deleterious(0) probably_damaging(0.945) TCGA-IA-A40U-01 5 141357939 141357939 G T RNF14 Missense_Mutation p.W126C 0.28 deleterious(0) possibly_damaging(0.887) TCGA-IA-A40U-01 5 154278113 154278113 C T GEMIN5 Missense_Mutation p.V1078I 0.34 tolerated(0.41) benign(0.109) TCGA-IA-A40U-01 5 37307409 37307409 A G NUP155 Missense_Mutation p.F965L 0.39 tolerated(0.07) benign(0.38) TCGA-IA-A40U-01 5 7816984 7816984 C T ADCY2 Silent p.P963P 0.09 TCGA-IA-A40U-01 6 154732110 154732110 T C CNKSR3 Missense_Mutation p.N413D 0.34 tolerated(0.29) benign(0.049) TCGA-IA-A40U-01 6 35471606 35471606 G C TULP1 Missense_Mutation p.R378G 0.41 deleterious(0) probably_damaging(0.998) TCGA-IA-A40U-01 6 75884802 75884802 C T COL12A1 Missense_Mutation p.A888T 0.38 possibly_damaging(0.893) TCGA-IA-A40U-01 7 116397543 116397543 A C MET Missense_Mutation p.I639L 0.42 tolerated(0.16) benign(0.002) TCGA-IA-A40U-01 7 130337745 130337745 G C COPG2 Missense_Mutation p.A96G 0.24 deleterious(0) possibly_damaging(0.648) TCGA-IA-A40U-01 8 8643536 8643536 T C MFHAS1 Missense_Mutation p.Q1052R 0.09 deleterious_low_confidence(0) benign(0.403) TCGA-IA-A40U-01 9 132382364 132382364 C T C9orf50 Missense_Mutation p.E164K 0.14 deleterious(0.04) possibly_damaging(0.81) TCGA-IA-A40U-01 9 95874554 95874554 T G C9orf89 Missense_Mutation p.L140R 0.40 tolerated(0.07) possibly_damaging(0.757) TCGA-IA-A40U-01 9 95874555 95874555 G T C9orf89 Silent p.L140L 0.42 TCGA-IA-A40X-01 10 67726425 67726425 C T CTNNA3 Missense_Mutation p.C782Y 0.39 deleterious(0) unknown(0) TCGA-IA-A40X-01 11 3744474 3744474 T A NUP98 Missense_Mutation p.S687C 0.37 deleterious(0) probably_damaging(0.983) TCGA-IA-A40X-01 11 95568462 95568462 C T MTMR2 Missense_Mutation p.V642I 0.36 tolerated_low_confidence(0.41) benign(0.08) TCGA-IA-A40X-01 12 3765545 3765545 G T EFCAB4B Missense_Mutation p.Q264K 0.34 tolerated(0.2) benign(0.161) TCGA-IA-A40X-01 13 53191660 53191660 A G HNRNPA1L2 5'UTR 0.50 TCGA-IA-A40X-01 14 103523442 103523442 G T CDC42BPB Missense_Mutation p.S23R 0.12 tolerated(0.53) benign(0.095) TCGA-IA-A40X-01 16 27445763 27445763 C G IL21R Missense_Mutation p.L49V 0.44 tolerated(0.16) benign(0.187) TCGA-IA-A40X-01 16 27459874 27459874 T C IL21R Missense_Mutation p.F296S 0.37 deleterious(0.04) possibly_damaging(0.746) TCGA-IA-A40X-01 17 17207002 17207002 G A NT5M Silent p.L46L 0.11 TCGA-IA-A40X-01 17 57134407 57134407 T C TRIM37 Missense_Mutation p.Y343C 0.53 deleterious(0.05) probably_damaging(1) TCGA-IA-A40X-01 19 30936011 30936011 G C ZNF536 Missense_Mutation p.E514D 0.47 deleterious(0.03) probably_damaging(0.986) TCGA-IA-A40X-01 19 39826619 39826619 T C GMFG 5'UTR 0.38 TCGA-IA-A40X-01 19 44278354 44278354 C T KCNN4 Missense_Mutation p.V225M 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-IA-A40X-01 1 90048545 90048545 A G LRRC8B Silent p.K112K 0.35 TCGA-IA-A40X-01 20 31660577 31660577 A G BPIFB3 Missense_Mutation p.N460S 0.39 tolerated(0.11) benign(0.009) TCGA-IA-A40X-01 20 33874582 33874582 G C FAM83C Missense_Mutation p.S667C 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.778) TCGA-IA-A40X-01 21 43802332 43802332 G C TMPRSS3 Missense_Mutation p.P265R 0.38 deleterious(0) probably_damaging(0.984) TCGA-IA-A40X-01 22 24125618 24125618 G T MMP11 Missense_Mutation p.G452C 0.13 deleterious(0) probably_damaging(1) TCGA-IA-A40X-01 2 155555531 155555531 T C KCNJ3 Missense_Mutation p.W82R 0.06 deleterious(0.01) probably_damaging(0.922) TCGA-IA-A40X-01 2 179615958 179615958 C T TTN Intron 0.29 TCGA-IA-A40X-01 2 219249037 219249037 C A SLC11A1 Missense_Mutation p.D74E 0.32 deleterious(0) probably_damaging(0.938) TCGA-IA-A40X-01 2 63282730 63282730 T A OTX1 Missense_Mutation p.V115E 0.38 tolerated(0.09) benign(0.379) TCGA-IA-A40X-01 3 3209472 3209472 T G CRBN Missense_Mutation p.Q178P 0.40 tolerated(0.23) benign(0.001) TCGA-IA-A40X-01 3 49212303 49212303 G A KLHDC8B Missense_Mutation p.V224I 0.53 tolerated(0.31) benign(0.095) TCGA-IA-A40X-01 5 1219218 1219218 C T SLC6A19 Silent p.L458L 0.39 TCGA-IA-A40X-01 5 140480216 140480216 A T PCDHB3 5'Flank 0.55 TCGA-IA-A40X-01 7 25182389 25182389 T G C7orf31 Missense_Mutation p.K243N 0.42 tolerated(0.37) possibly_damaging(0.885) TCGA-IA-A40X-01 7 5396874 5396874 G A TNRC18 Nonsense_Mutation p.Q1623* 0.42 TCGA-IA-A40X-01 9 88844472 88844472 G A C9orf153 Missense_Mutation p.A16V 0.36 deleterious(0.05) possibly_damaging(0.866) TCGA-IA-A40X-01 X 153908429 153908429 A G GAB3 Missense_Mutation p.S543P 0.39 deleterious(0.04) benign(0.216) TCGA-IA-A40X-01 X 7811790 7811790 C T VCX Silent p.S118S 0.35 TCGA-IA-A40Y-01 10 101578919 101578919 C A ABCC2 Missense_Mutation p.T838K 0.18 tolerated(0.79) benign(0.004) TCGA-IA-A40Y-01 10 104404529 104404529 G C TRIM8 Missense_Mutation p.C52S 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-IA-A40Y-01 10 123239588 123239588 G A FGFR2 Intron 0.09 TCGA-IA-A40Y-01 10 16955917 16955917 G A CUBN Missense_Mutation p.R2476W 0.32 tolerated(0.07) benign(0.011) TCGA-IA-A40Y-01 10 22618246 22618246 C G BMI1 Missense_Mutation p.D252E 0.31 tolerated(0.69) benign(0.016) TCGA-IA-A40Y-01 10 6255641 6255641 C T PFKFB3 Silent p.P44P 0.38 TCGA-IA-A40Y-01 11 18434253 18434253 C G LDHC Intron 0.09 TCGA-IA-A40Y-01 11 18738381 18738381 A G IGSF22 Silent p.D380D 0.29 TCGA-IA-A40Y-01 11 48328626 48328626 C G OR4S1 Missense_Mutation p.I284M 0.05 deleterious(0) probably_damaging(0.994) TCGA-IA-A40Y-01 11 59282746 59282746 G C OR4D9 Missense_Mutation p.D121H 0.10 deleterious(0) probably_damaging(0.983) TCGA-IA-A40Y-01 11 6816105 6816105 C A OR6A2 Missense_Mutation p.V279F 0.10 deleterious(0) probably_damaging(1) TCGA-IA-A40Y-01 11 74875111 74875111 G T SLCO2B1 Missense_Mutation p.S84I 0.09 deleterious(0) probably_damaging(0.979) TCGA-IA-A40Y-01 11 78413254 78413254 C A TENM4 Missense_Mutation p.E1468D 0.51 tolerated(0.1) benign(0.143) TCGA-IA-A40Y-01 12 106717360 106717360 C G TCP11L2 Missense_Mutation p.H236Q 0.16 tolerated(0.1) benign(0.026) TCGA-IA-A40Y-01 12 110207030 110207030 G A FAM222A Silent p.T432T 0.08 TCGA-IA-A40Y-01 12 110234478 110234478 G A TRPV4 Missense_Mutation p.T395M 0.16 tolerated(0.11) benign(0.043) TCGA-IA-A40Y-01 12 49431988 49431988 C G KMT2D Missense_Mutation p.A3051P 0.23 probably_damaging(0.996) TCGA-IA-A40Y-01 12 57625677 57625677 G C SHMT2 Missense_Mutation p.D165H 0.20 deleterious(0.01) possibly_damaging(0.899) TCGA-IA-A40Y-01 12 9251341 9251341 G C A2M Missense_Mutation p.S571R 0.17 tolerated(0.1) benign(0.033) TCGA-IA-A40Y-01 13 101881861 101881861 T C NALCN Silent p.G503G 0.38 TCGA-IA-A40Y-01 13 50134123 50134123 G C RCBTB1 Silent p.L125L 0.21 TCGA-IA-A40Y-01 14 103988811 103988811 T G CKB Missense_Mutation p.H7P 0.52 deleterious(0) possibly_damaging(0.61) TCGA-IA-A40Y-01 14 31582629 31582629 C T HECTD1 Missense_Mutation p.S1973N 0.17 tolerated_low_confidence(0.24) benign(0.012) TCGA-IA-A40Y-01 14 31763220 31763220 A G RP11-596D21.1 Intron 0.05 TCGA-IA-A40Y-01 14 64519117 64519117 T G SYNE2 Nonsense_Mutation p.L2829* 0.13 TCGA-IA-A40Y-01 16 598994 598994 A G CAPN15 Missense_Mutation p.N484S 0.05 tolerated(0.06) possibly_damaging(0.885) TCGA-IA-A40Y-01 17 10300168 10300168 A T MYH8 Silent p.S1438S 0.08 TCGA-IA-A40Y-01 17 32956104 32956104 C G TMEM132E Missense_Mutation p.R317G 0.03 deleterious(0) possibly_damaging(0.701) TCGA-IA-A40Y-01 17 57728648 57728648 G T CLTC Missense_Mutation p.A256S 0.04 deleterious(0.05) benign(0.03) TCGA-IA-A40Y-01 17 65960510 65960510 G T BPTF Missense_Mutation p.R2815L 0.09 probably_damaging(0.923) TCGA-IA-A40Y-01 17 7689597 7689597 C T DNAH2 Silent p.R2095R 0.07 TCGA-IA-A40Y-01 17 77807886 77807886 G C CBX4 Missense_Mutation p.P519A 0.09 tolerated(0.73) benign(0.028) TCGA-IA-A40Y-01 17 79165083 79165083 C A AZI1 Missense_Mutation p.G892V 0.19 deleterious(0.04) possibly_damaging(0.733) TCGA-IA-A40Y-01 18 61322975 61322975 G C SERPINB3 Missense_Mutation p.F363L 0.39 deleterious(0.04) benign(0.284) TCGA-IA-A40Y-01 19 15587343 15587343 G T PGLYRP2 Silent p.T46T 0.15 TCGA-IA-A40Y-01 19 35512474 35512474 C T GRAMD1A Missense_Mutation p.S515L 0.24 tolerated(0.07) benign(0.407) TCGA-IA-A40Y-01 19 37680577 37680577 C T ZNF585B Missense_Mutation p.R93H 0.05 tolerated(0.27) benign(0) TCGA-IA-A40Y-01 1 101198018 101198018 C G VCAM1 Missense_Mutation p.L524V 0.36 tolerated(0.67) benign(0.032) TCGA-IA-A40Y-01 1 156552861 156552861 G C TTC24 Missense_Mutation p.G313A 0.19 deleterious(0.05) possibly_damaging(0.819) TCGA-IA-A40Y-01 1 158596772 158596772 T C SPTA1 Missense_Mutation p.K1897R 0.16 tolerated(0.2) benign(0.076) TCGA-IA-A40Y-01 1 161989778 161989778 C G OLFML2B Silent p.S123S 0.04 TCGA-IA-A40Y-01 1 17084973 17084973 C G MST1L RNA 0.03 TCGA-IA-A40Y-01 1 19181215 19181215 G A TAS1R2 Missense_Mutation p.T250M 0.18 tolerated(0.08) benign(0.21) TCGA-IA-A40Y-01 1 216595737 216595737 C T USH2A 5'UTR 0.22 TCGA-IA-A40Y-01 1 222715413 222715413 G A HHIPL2 Silent p.F353F 0.05 TCGA-IA-A40Y-01 1 237993878 237993878 C T RYR2 Missense_Mutation p.P4902S 0.35 possibly_damaging(0.857) TCGA-IA-A40Y-01 1 240072456 240072456 C T CHRM3 Missense_Mutation p.R569C 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-IA-A40Y-01 20 32873337 32873337 C T AHCY Missense_Mutation p.S359N 0.18 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-IA-A40Y-01 20 3669193 3669193 G A SIGLEC1 3'UTR 0.14 TCGA-IA-A40Y-01 20 42089596 42089596 T G SRSF6 Missense_Mutation p.S310A 0.15 tolerated_low_confidence(0.11) unknown(0) TCGA-IA-A40Y-01 20 44044767 44044767 G C PIGT 5'UTR 0.32 TCGA-IA-A40Y-01 20 56195329 56195329 G A ZBP1 Missense_Mutation p.P8L 0.03 tolerated(0.56) probably_damaging(0.913) TCGA-IA-A40Y-01 22 31484747 31484747 G C SMTN Silent p.R119R 0.28 TCGA-IA-A40Y-01 22 37627391 37627391 T A RAC2 Missense_Mutation p.I110F 0.37 tolerated_low_confidence(0.11) possibly_damaging(0.699) TCGA-IA-A40Y-01 22 50282513 50282513 A T ZBED4 3'UTR 0.05 TCGA-IA-A40Y-01 2 149247732 149247732 G A MBD5 Missense_Mutation p.E1278K 0.09 deleterious_low_confidence(0) unknown(0) TCGA-IA-A40Y-01 2 162274429 162274429 T A TBR1 Intron 0.29 TCGA-IA-A40Y-01 2 17699184 17699184 T G RAD51AP2 Missense_Mutation p.I167L 0.22 tolerated(0.53) benign(0.004) TCGA-IA-A40Y-01 2 179469564 179469564 C G TTN Missense_Mutation p.L18084F 0.18 TCGA-IA-A40Y-01 2 198265617 198265617 G A SF3B1 Missense_Mutation p.A847V 0.15 tolerated(0.11) benign(0.015) TCGA-IA-A40Y-01 2 208725904 208725904 C G PLEKHM3 Missense_Mutation p.S678T 0.07 tolerated(0.82) probably_damaging(0.997) TCGA-IA-A40Y-01 2 234368474 234368474 C T DGKD Silent p.V922V 0.06 TCGA-IA-A40Y-01 2 238006468 238006468 A G COPS8 3'UTR 0.19 TCGA-IA-A40Y-01 2 25458669 25458669 G A DNMT3A Missense_Mutation p.T835M 0.31 deleterious(0) probably_damaging(0.999) TCGA-IA-A40Y-01 2 37430124 37430124 T A CEBPZ Missense_Mutation p.N971I 0.37 tolerated(0.09) benign(0.002) TCGA-IA-A40Y-01 2 44566372 44566372 G A PREPL Nonsense_Mutation p.R295* 0.08 TCGA-IA-A40Y-01 2 44566451 44566451 A G PREPL Silent p.N268N 0.11 TCGA-IA-A40Y-01 2 55561724 55561724 T G CCDC88A Missense_Mutation p.K745Q 0.17 tolerated(0.09) benign(0.188) TCGA-IA-A40Y-01 2 95522788 95522788 T C ANKRD20A8P RNA 0.18 TCGA-IA-A40Y-01 3 10089633 10089633 G A FANCD2 Silent p.S437S 0.06 TCGA-IA-A40Y-01 3 151475280 151475280 T C AADACL2 Silent p.D368D 0.08 TCGA-IA-A40Y-01 3 164767590 164767590 G A SI Missense_Mutation p.P529L 0.07 deleterious(0.01) possibly_damaging(0.683) TCGA-IA-A40Y-01 3 38962716 38962716 C T SCN11A Missense_Mutation p.R248H 0.77 tolerated(0.11) benign(0.089) TCGA-IA-A40Y-01 4 156724870 156724870 T G GUCY1B3 Missense_Mutation p.M503R 0.11 deleterious(0) possibly_damaging(0.785) TCGA-IA-A40Y-01 4 39439409 39439409 G C KLB Missense_Mutation p.E467Q 0.14 deleterious(0) probably_damaging(0.992) TCGA-IA-A40Y-01 4 57889646 57889646 A T POLR2B Missense_Mutation p.K889M 0.08 deleterious(0) probably_damaging(1) TCGA-IA-A40Y-01 5 13771076 13771076 G T DNAH5 Missense_Mutation p.F3129L 0.06 benign(0.418) TCGA-IA-A40Y-01 5 140711698 140711698 G A PCDHGA1 Missense_Mutation p.E483K 0.20 tolerated_low_confidence(0.1) benign(0.081) TCGA-IA-A40Y-01 5 157285975 157285975 A T CLINT1 Missense_Mutation p.L2M 0.05 tolerated(0.19) benign(0.373) TCGA-IA-A40Y-01 5 180050943 180050943 T A FLT4 Nonsense_Mutation p.K514* 0.10 TCGA-IA-A40Y-01 5 55110902 55110902 G A DDX4 Missense_Mutation p.R630H 0.06 deleterious(0) probably_damaging(1) TCGA-IA-A40Y-01 5 86645138 86645138 A T RASA1 Missense_Mutation p.T404S 0.35 tolerated(0.44) probably_damaging(0.957) TCGA-IA-A40Y-01 6 125619919 125619919 C T HDDC2 Missense_Mutation p.V84I 0.47 deleterious(0.03) probably_damaging(0.924) TCGA-IA-A40Y-01 6 170871082 170871082 G A TBP Silent p.Q86Q 0.50 TCGA-IA-A40Y-01 6 26217223 26217223 A T HIST1H2AE Missense_Mutation p.Q7H 0.53 deleterious_low_confidence(0.01) unknown(0) TCGA-IA-A40Y-01 6 51889790 51889790 G A PKHD1 Silent p.V1606V 0.04 TCGA-IA-A40Y-01 6 84911470 84911470 C T KIAA1009 Missense_Mutation p.G235S 0.51 deleterious(0.02) possibly_damaging(0.86) TCGA-IA-A40Y-01 6 89859124 89859124 T A PM20D2 Silent p.A202A 0.07 TCGA-IA-A40Y-01 7 116863074 116863074 C G ST7 3'UTR 0.12 TCGA-IA-A40Y-01 7 117267708 117267708 G T CFTR Missense_Mutation p.D1201Y 0.23 deleterious(0.01) benign(0.177) TCGA-IA-A40Y-01 7 26404687 26404687 C G SNX10 Missense_Mutation p.S78C 0.05 tolerated(0.06) probably_damaging(0.962) TCGA-IA-A40Y-01 7 31609394 31609394 G T CCDC129 Missense_Mutation p.M119I 0.16 tolerated(0.2) benign(0.023) TCGA-IA-A40Y-01 8 103573207 103573207 T C ODF1 3'UTR 0.36 TCGA-IA-A40Y-01 8 145059064 145059064 C G PARP10 Missense_Mutation p.G369A 0.20 tolerated(0.11) benign(0.008) TCGA-IA-A40Y-01 8 69351693 69351693 G C C8orf34 Intron 0.21 TCGA-IA-A40Y-01 8 95906316 95906316 G A CCNE2 Missense_Mutation p.P16S 0.23 tolerated(0.2) benign(0.003) TCGA-IA-A40Y-01 9 116153879 116153879 C T ALAD Silent p.E63E 0.05 TCGA-IA-A40Y-01 9 123620475 123620475 C T PHF19 Missense_Mutation p.R497H 0.46 tolerated(0.42) benign(0.002) TCGA-IA-A40Y-01 9 26962063 26962075 GAAATATTCGAGT - IFT74 Frame_Shift_Del p.N34Qfs*18 0.42 TCGA-IA-A40Y-01 X 118797595 118797595 T A SEPT6 Missense_Mutation p.N64I 0.10 deleterious(0) probably_damaging(0.917) TCGA-IA-A40Y-01 X 150889896 150889896 G A FATE1 Silent p.L88L 0.14 TCGA-IA-A83S-01 10 103769138 103769138 A C C10orf76 Nonsense_Mutation p.L316* 0.21 TCGA-IA-A83S-01 10 103922114 103922114 G T NOLC1 3'UTR 0.29 TCGA-IA-A83S-01 10 105926263 105926263 G - WDR96 Frame_Shift_Del p.Q1008Kfs*5 0.23 TCGA-IA-A83S-01 10 116919947 116919948 AA C ATRNL1 Frame_Shift_Del p.N326Pfs*9 0.19 TCGA-IA-A83S-01 10 121689138 121689138 C T SEC23IP Missense_Mutation p.S778L 0.21 tolerated(0.14) benign(0.011) TCGA-IA-A83S-01 10 129535978 129535978 G A FOXI2 Silent p.Q147Q 0.15 TCGA-IA-A83S-01 10 23244829 23244829 C A ARMC3 Missense_Mutation p.A87D 0.08 deleterious(0) probably_damaging(0.99) TCGA-IA-A83S-01 10 61424076 61424076 A G SLC16A9 Silent p.L115L 0.29 TCGA-IA-A83S-01 10 7683994 7683994 G A ITIH5 Silent p.A65A 0.07 TCGA-IA-A83S-01 10 77159888 77159888 T G ZNF503 Missense_Mutation p.E187A 0.30 deleterious(0.03) benign(0.2) TCGA-IA-A83S-01 10 79744981 79744981 G A POLR3A Silent p.I1063I 0.25 TCGA-IA-A83S-01 11 118213445 118213445 G T CD3D 5'UTR 0.15 TCGA-IA-A83S-01 11 118894318 118894318 T C TRAPPC4 3'UTR 0.28 TCGA-IA-A83S-01 11 12244191 12244191 G A MICAL2 Silent p.Q450Q 0.29 TCGA-IA-A83S-01 11 17632081 17632081 T - OTOG Frame_Shift_Del p.L1757Pfs*112 0.08 TCGA-IA-A83S-01 11 209732 209732 A G RIC8A Missense_Mutation p.E153G 0.23 tolerated(0.26) benign(0.096) TCGA-IA-A83S-01 11 35287253 35287254 - CCCCCC SLC1A2 In_Frame_Ins p.G491_I492insGG 0.20 TCGA-IA-A83S-01 11 55798423 55798423 T G OR5AS1 Missense_Mutation p.F177V 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-IA-A83S-01 11 56344355 56344355 C A OR5M10 Missense_Mutation p.L281F 0.19 deleterious(0) probably_damaging(0.943) TCGA-IA-A83S-01 11 58893342 58893342 C A FAM111B Missense_Mutation p.T591N 0.24 deleterious(0.02) possibly_damaging(0.454) TCGA-IA-A83S-01 11 60704300 60704300 G C TMEM132A Missense_Mutation p.R999P 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-IA-A83S-01 11 68571538 68571538 G T CPT1A Missense_Mutation p.P162H 0.20 deleterious(0.02) possibly_damaging(0.825) TCGA-IA-A83S-01 11 6891542 6891542 C T OR10A2 Missense_Mutation p.A186V 0.20 tolerated(0.89) probably_damaging(1) TCGA-IA-A83S-01 11 82877674 82877674 A G PCF11 Missense_Mutation p.T579A 0.19 tolerated(0.77) benign(0) TCGA-IA-A83S-01 12 42768685 42768685 G A PPHLN1 Missense_Mutation p.R107K 0.36 tolerated(0.11) benign(0.17) TCGA-IA-A83S-01 12 50500627 50500627 T C GPD1 Missense_Mutation p.L180P 0.22 deleterious(0) probably_damaging(0.99) TCGA-IA-A83S-01 12 53848614 53848614 A C PCBP2 Missense_Mutation p.L10F 0.23 deleterious(0.03) possibly_damaging(0.452) TCGA-IA-A83S-01 12 56720418 56720418 G A PAN2 Silent p.N415N 0.34 TCGA-IA-A83S-01 12 57548432 57548432 A G LRP1 Missense_Mutation p.E392G 0.29 probably_damaging(0.934) TCGA-IA-A83S-01 12 62148697 62148697 C T FAM19A2 Missense_Mutation p.G72E 0.42 deleterious(0.01) probably_damaging(1) TCGA-IA-A83S-01 12 66531931 66531931 C T TMBIM4 Missense_Mutation p.E176K 0.07 tolerated(0.06) possibly_damaging(0.555) TCGA-IA-A83S-01 12 69666943 69666943 T A CPSF6 3'UTR 0.28 TCGA-IA-A83S-01 12 8212016 8212016 A - C3AR1 Frame_Shift_Del p.S256Lfs*39 0.24 TCGA-IA-A83S-01 12 85279275 85279275 C T SLC6A15 Silent p.Q171Q 0.16 TCGA-IA-A83S-01 13 103701721 103701721 A G SLC10A2 Silent p.T279T 0.19 TCGA-IA-A83S-01 13 113801753 113801753 T C F10 Missense_Mutation p.Y270H 0.08 tolerated(0.32) benign(0.066) TCGA-IA-A83S-01 13 20048076 20048076 G C TPTE2 Missense_Mutation p.L124V 0.28 tolerated(0.05) benign(0.329) TCGA-IA-A83S-01 13 52513260 52513260 A G ATP7B Missense_Mutation p.L1209P 0.25 deleterious(0) probably_damaging(1) TCGA-IA-A83S-01 13 84455218 84455218 A G SLITRK1 Missense_Mutation p.L142S 0.35 deleterious(0) probably_damaging(0.979) TCGA-IA-A83S-01 14 105170325 105170325 C A INF2 Intron 0.15 TCGA-IA-A83S-01 14 20586055 20586055 A G OR4K17 Missense_Mutation p.M164V 0.21 tolerated(0.26) benign(0.01) TCGA-IA-A83S-01 14 21967914 21967914 A C METTL3 Missense_Mutation p.L446R 0.33 deleterious(0) possibly_damaging(0.904) TCGA-IA-A83S-01 14 23355339 23355339 C - REM2 Frame_Shift_Del p.L210Yfs*42 0.21 TCGA-IA-A83S-01 14 39602913 39602913 T A GEMIN2 Missense_Mutation p.L265M 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-IA-A83S-01 14 71524368 71524368 C G PCNX Silent p.L1593L 0.26 TCGA-IA-A83S-01 14 74976904 74976906 CAC A LTBP2 Frame_Shift_Del p.E1013Dfs*24 0.31 TCGA-IA-A83S-01 14 92608527 92608527 T A CPSF2 Silent p.L227L 0.28 TCGA-IA-A83S-01 14 95578563 95578563 G A DICER1 Nonsense_Mutation p.R688* 0.04 TCGA-IA-A83S-01 15 34648422 34648422 C T NUTM1 Missense_Mutation p.A710V 0.16 tolerated(0.07) benign(0.139) TCGA-IA-A83S-01 15 63866572 63866572 C A USP3 Missense_Mutation p.Q356K 0.22 tolerated(0.57) benign(0.194) TCGA-IA-A83S-01 15 72030175 72030175 G A THSD4 Missense_Mutation p.E579K 0.15 tolerated(0.44) benign(0.005) TCGA-IA-A83S-01 15 75146985 75146985 G T SCAMP2 Silent p.P21P 0.21 TCGA-IA-A83S-01 16 31341675 31341675 T A ITGAM Missense_Mutation p.F1037Y 0.36 deleterious(0.03) benign(0.005) TCGA-IA-A83S-01 16 32266536 32266536 G T TP53TG3D 3'UTR 0.11 TCGA-IA-A83S-01 16 33020876 33020876 A G IGHV3OR16-8 Missense_Mutation p.N95S 0.23 deleterious_low_confidence(0) benign(0.032) TCGA-IA-A83S-01 16 66921653 66921653 C G PDP2 3'UTR 0.22 TCGA-IA-A83S-01 16 68267898 68267898 T - ESRP2 Frame_Shift_Del p.K147Rfs*41 0.17 TCGA-IA-A83S-01 16 74487150 74487150 C T GLG1 Missense_Mutation p.S1152N 0.35 tolerated(0.31) benign(0.15) TCGA-IA-A83S-01 16 81060147 81060147 T G CENPN Missense_Mutation p.I238M 0.39 deleterious(0.01) possibly_damaging(0.877) TCGA-IA-A83S-01 16 88782672 88782672 G C PIEZO1 Missense_Mutation p.L2355V 0.28 tolerated(0.16) possibly_damaging(0.657) TCGA-IA-A83S-01 17 11985218 11985218 G - MAP2K4 Intron 0.21 TCGA-IA-A83S-01 17 17697241 17697241 G T RAI1 Missense_Mutation p.A327S 0.21 tolerated(0.47) benign(0.005) TCGA-IA-A83S-01 17 17697242 17697242 C A RAI1 Missense_Mutation p.A327D 0.23 deleterious(0) benign(0.097) TCGA-IA-A83S-01 17 19564524 19564524 C A ALDH3A2 Missense_Mutation p.L295I 0.28 tolerated(0.14) benign(0.018) TCGA-IA-A83S-01 17 3526658 3526658 G A SHPK Nonsense_Mutation p.Q208* 0.25 TCGA-IA-A83S-01 17 40647714 40647714 T C ATP6V0A1 Missense_Mutation p.Y521H 0.24 deleterious(0) probably_damaging(0.982) TCGA-IA-A83S-01 17 41353793 41353793 A T NBR1 Missense_Mutation p.R853S 0.18 tolerated(0.06) benign(0.066) TCGA-IA-A83S-01 17 46136179 46136179 T C NFE2L1 Missense_Mutation p.S499P 0.33 deleterious(0) probably_damaging(0.98) TCGA-IA-A83S-01 17 5071273 5071273 C T USP6 Missense_Mutation p.A1028V 0.19 tolerated_low_confidence(0.15) probably_damaging(0.999) TCGA-IA-A83S-01 17 5336125 5336125 A T RPAIN 3'Flank 0.26 TCGA-IA-A83S-01 17 61573760 61573760 T C ACE Missense_Mutation p.F1129S 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-IA-A83S-01 17 6899465 6899465 C - ALOX12 Frame_Shift_Del p.A12Pfs*52 0.19 TCGA-IA-A83S-01 17 7106870 7106870 G A DLG4 Silent p.R169R 0.25 TCGA-IA-A83S-01 17 79090509 79090509 C A BAIAP2 3'UTR 0.40 TCGA-IA-A83S-01 18 12329538 12329538 G A TUBB6 3'Flank 0.05 TCGA-IA-A83S-01 18 19405645 19405645 T C MIB1 Intron 0.17 TCGA-IA-A83S-01 18 267995 267995 T - THOC1 Frame_Shift_Del p.S9Vfs*17 0.23 TCGA-IA-A83S-01 18 2927795 2927795 G A LPIN2 Silent p.S545S 0.18 TCGA-IA-A83S-01 18 67992989 67992989 A T SOCS6 Missense_Mutation p.Q362L 0.20 deleterious(0) benign(0.209) TCGA-IA-A83S-01 19 10106262 10106262 G T COL5A3 Missense_Mutation p.P522H 0.19 unknown(0) TCGA-IA-A83S-01 19 1272031 1272031 A C CIRBP Missense_Mutation p.R161S 0.32 deleterious(0) unknown(0) TCGA-IA-A83S-01 19 14073993 14073993 G A RFX1 Silent p.L889L 0.21 TCGA-IA-A83S-01 19 17720812 17720812 C T UNC13A Missense_Mutation p.R1583H 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-IA-A83S-01 19 55447667 55447667 G T NLRP7 Missense_Mutation p.D754E 0.27 tolerated(1) benign(0.002) TCGA-IA-A83S-01 19 5680529 5680529 G T C19orf70 5'UTR 0.26 TCGA-IA-A83S-01 19 58199244 58199244 G T ZNF551 Missense_Mutation p.S534I 0.23 deleterious(0.03) benign(0.378) TCGA-IA-A83S-01 19 6387445 6387445 C T GTF2F1 Missense_Mutation p.R151Q 0.22 tolerated(0.18) benign(0.137) TCGA-IA-A83S-01 19 9071193 9071193 T A MUC16 Missense_Mutation p.H5418L 0.26 unknown(0) TCGA-IA-A83S-01 19 9071194 9071194 G A MUC16 Missense_Mutation p.H5418Y 0.27 unknown(0) TCGA-IA-A83S-01 1 115428830 115428830 G C SYCP1 Missense_Mutation p.E364Q 0.27 tolerated(0.17) probably_damaging(0.954) TCGA-IA-A83S-01 1 12169703 12169703 G C TNFRSF8 Missense_Mutation p.E168Q 0.26 tolerated(0.49) benign(0.137) TCGA-IA-A83S-01 1 153633832 153633832 C T SNAPIN 3'UTR 0.19 TCGA-IA-A83S-01 1 158262079 158262080 - AA CD1C Frame_Shift_Ins p.N179Kfs*4 0.21 TCGA-IA-A83S-01 1 162825494 162825494 C G C1orf110 Missense_Mutation p.R81T 0.24 deleterious(0.02) probably_damaging(0.943) TCGA-IA-A83S-01 1 193038376 193038376 G T TROVE2 Missense_Mutation p.L64F 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-IA-A83S-01 1 206904533 206904533 C T MAPKAPK2 Missense_Mutation p.P273L 0.07 deleterious(0) probably_damaging(0.996) TCGA-IA-A83S-01 1 225230800 225230800 T G DNAH14 Silent p.L603L 0.30 TCGA-IA-A83S-01 1 226111423 226111423 A G RP4-559A3.7 Missense_Mutation p.L39P 0.22 deleterious_low_confidence(0.04) probably_damaging(0.936) TCGA-IA-A83S-01 1 27056261 27056261 G T ARID1A Silent p.G419G 0.27 TCGA-IA-A83S-01 1 3322089 3322089 C A PRDM16 Missense_Mutation p.H355N 0.24 deleterious(0) probably_damaging(0.991) TCGA-IA-A83S-01 1 3388312 3388312 C A ARHGEF16 Intron 0.29 TCGA-IA-A83S-01 1 57610985 57610985 T C DAB1 Missense_Mutation p.Q62R 0.25 deleterious(0) benign(0.229) TCGA-IA-A83S-01 1 65830460 65830461 TG - DNAJC6 Frame_Shift_Del p.V113Dfs*28 0.20 TCGA-IA-A83S-01 1 6693234 6693234 A C THAP3 3'UTR 0.27 TCGA-IA-A83S-01 1 78425862 78425887 CTTCTACCTGGATCAGGAGGAGCCTG - FUBP1 Splice_Site p.X520_splice 0.11 TCGA-IA-A83S-01 1 94342098 94342098 A C DNTTIP2 Missense_Mutation p.F465V 0.25 tolerated(0.1) benign(0.043) TCGA-IA-A83S-01 20 3305593 3305593 G C C20orf194 Missense_Mutation p.T404S 0.09 tolerated(0.17) benign(0.005) TCGA-IA-A83S-01 20 37159824 37159824 A T RALGAPB Missense_Mutation p.I689F 0.26 deleterious(0.04) possibly_damaging(0.517) TCGA-IA-A83S-01 20 42157990 42157990 C T L3MBTL1 Silent p.F324F 0.34 TCGA-IA-A83S-01 20 47686789 47686789 T A CSE1L Missense_Mutation p.N241K 0.28 tolerated(0.54) benign(0.244) TCGA-IA-A83S-01 20 741447 741447 G A SLC52A3 3'UTR 0.19 TCGA-IA-A83S-01 21 30339388 30339388 T G LTN1 Missense_Mutation p.K521N 0.18 tolerated(0.54) benign(0.003) TCGA-IA-A83S-01 21 42775260 42775260 A G MX2 Missense_Mutation p.Q547R 0.22 tolerated(1) benign(0.009) TCGA-IA-A83S-01 21 45744509 45744509 G A PFKL Missense_Mutation p.E596K 0.24 deleterious(0) probably_damaging(0.926) TCGA-IA-A83S-01 22 22724319 22724319 C T IGLV7-46 Missense_Mutation p.T72I 0.25 TCGA-IA-A83S-01 22 24376209 24376209 A C GSTT1 3'UTR 0.40 TCGA-IA-A83S-01 22 42301503 42301503 C T SREBF2 Missense_Mutation p.R1089C 0.19 tolerated(0.17) probably_damaging(0.91) TCGA-IA-A83S-01 22 50903456 50903456 A G SBF1 Missense_Mutation p.Y436H 0.17 deleterious(0) probably_damaging(0.988) TCGA-IA-A83S-01 2 10139100 10139100 A G GRHL1 Missense_Mutation p.D562G 0.05 deleterious(0.03) possibly_damaging(0.505) TCGA-IA-A83S-01 2 112638235 112638235 G T ANAPC1 Silent p.G56G 0.29 TCGA-IA-A83S-01 2 160746833 160746833 T C LY75-CD302 Silent p.Q231Q 0.12 TCGA-IA-A83S-01 2 177017568 177017568 A T HOXD4 Silent p.S222S 0.20 TCGA-IA-A83S-01 2 179300994 179300994 G A PRKRA Missense_Mutation p.S221F 0.18 deleterious(0) probably_damaging(0.996) TCGA-IA-A83S-01 2 179455837 179455837 T C TTN Missense_Mutation p.I20205M 0.23 TCGA-IA-A83S-01 2 24535083 24535094 AAACGAGCAGAA G ITSN2 Frame_Shift_Del p.S114Wfs*46 0.18 TCGA-IA-A83S-01 2 38527436 38527436 G C ATL2 Missense_Mutation p.P369R 0.28 deleterious(0) probably_damaging(1) TCGA-IA-A83S-01 2 43937155 43937155 G A PLEKHH2 Missense_Mutation p.E665K 0.26 deleterious(0) benign(0.394) TCGA-IA-A83S-01 2 54587567 54587567 A T C2orf73 Missense_Mutation p.R244S 0.20 tolerated(0.08) benign(0.048) TCGA-IA-A83S-01 2 64779245 64779245 A G AFTPH Missense_Mutation p.S213G 0.24 deleterious(0.03) benign(0.011) TCGA-IA-A83S-01 2 85662170 85662170 A C SH2D6 Missense_Mutation p.N31T 0.25 tolerated(0.73) benign(0.048) TCGA-IA-A83S-01 3 100470405 100470405 T C ABI3BP Missense_Mutation p.I1035V 0.17 tolerated(0.53) benign(0.002) TCGA-IA-A83S-01 3 142443574 142443574 G A TRPC1 Splice_Site p.X58_splice 0.37 TCGA-IA-A83S-01 3 155571862 155571862 G - SLC33A1 5'UTR 0.17 TCGA-IA-A83S-01 3 184428599 184428599 T G MAGEF1 3'UTR 0.38 TCGA-IA-A83S-01 3 185774898 185774898 C A ETV5 Missense_Mutation p.R392L 0.34 deleterious(0) probably_damaging(0.999) TCGA-IA-A83S-01 3 191092937 191092937 C T CCDC50 Missense_Mutation p.H179Y 0.17 deleterious(0.02) benign(0.036) TCGA-IA-A83S-01 3 38101345 38101345 T A DLEC1 Splice_Site p.X225_splice 0.14 TCGA-IA-A83S-01 3 44952609 44952609 T A TGM4 Missense_Mutation p.F589Y 0.38 deleterious(0.01) possibly_damaging(0.689) TCGA-IA-A83S-01 3 57108687 57108688 GC - SPATA12 3'UTR 0.14 TCGA-IA-A83S-01 3 68929968 68929968 G T FAM19A4 Missense_Mutation p.L15M 0.06 tolerated(0.1) benign(0.009) TCGA-IA-A83S-01 4 142155204 142155204 T A ZNF330 3'UTR 0.22 TCGA-IA-A83S-01 4 1954929 1954929 C G WHSC1 Intron 0.23 TCGA-IA-A83S-01 4 3254938 3254938 T C MSANTD1 Silent p.L109L 0.15 TCGA-IA-A83S-01 4 39878638 39878638 C T PDS5A Missense_Mutation p.E710K 0.18 tolerated(0.11) probably_damaging(0.916) TCGA-IA-A83S-01 4 6863999 6864000 - A KIAA0232 Frame_Shift_Ins p.N631Kfs*9 0.20 TCGA-IA-A83S-01 4 76481315 76481315 C T C4orf26 Missense_Mutation p.S8F 0.30 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-IA-A83S-01 5 161524860 161524860 C G GABRG2 Missense_Mutation p.L182V 0.10 tolerated(0.11) possibly_damaging(0.814) TCGA-IA-A83S-01 5 26988254 26988254 A T CDH9 Missense_Mutation p.L63M 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-IA-A83S-01 5 36177300 36177300 C T SKP2 Silent p.L323L 0.25 TCGA-IA-A83S-01 5 36976168 36976169 - A NIPBL Frame_Shift_Ins p.N388Kfs*2 0.18 TCGA-IA-A83S-01 6 108093476 108093476 G A SCML4 Missense_Mutation p.T19M 0.16 deleterious(0.03) possibly_damaging(0.72) TCGA-IA-A83S-01 6 136599311 136599311 A G BCLAF1 Silent p.P236P 0.15 TCGA-IA-A83S-01 6 154771340 154771340 G A CNKSR3 Silent p.I35I 0.29 TCGA-IA-A83S-01 6 32014119 32014119 A G TNXB 5'Flank 0.22 TCGA-IA-A83S-01 6 38976613 38976613 C A DNAH8 Missense_Mutation p.A4196D 0.23 benign(0.001) TCGA-IA-A83S-01 6 43250879 43250879 C T TTBK1 Nonsense_Mutation p.Q801* 0.20 TCGA-IA-A83S-01 6 46555835 46555835 A G CYP39A1 Missense_Mutation p.M366T 0.03 deleterious(0) possibly_damaging(0.752) TCGA-IA-A83S-01 6 46726721 46726721 C A ANKRD66 3'UTR 0.22 TCGA-IA-A83S-01 7 123197948 123197948 G C NDUFA5 5'UTR 0.17 TCGA-IA-A83S-01 7 2409282 2409282 T A EIF3B Missense_Mutation p.C527S 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-IA-A83S-01 7 90547017 90547017 G T CDK14 Silent p.G250G 0.07 TCGA-IA-A83S-01 8 33364813 33364813 G A TTI2 Silent p.N287N 0.24 TCGA-IA-A83S-01 8 48771456 48771456 A C PRKDC Missense_Mutation p.L2099R 0.31 probably_damaging(0.999) TCGA-IA-A83S-01 8 55370847 55370847 C G SOX17 Missense_Mutation p.A50G 0.22 tolerated(0.37) benign(0.052) TCGA-IA-A83S-01 8 56986652 56986652 G T RPS20 Missense_Mutation p.L24I 0.36 deleterious(0.03) possibly_damaging(0.51) TCGA-IA-A83S-01 8 681145 681145 T C ERICH1 Missense_Mutation p.K6R 0.16 tolerated(0.82) benign(0) TCGA-IA-A83S-01 8 75925137 75925137 G A CRISPLD1 Silent p.P130P 0.20 TCGA-IA-A83S-01 9 102891960 102891960 A T INVS Intron 0.04 TCGA-IA-A83S-01 9 116054009 116054009 T A PRPF4 3'UTR 0.37 TCGA-IA-A83S-01 9 124526156 124526156 C T DAB2IP Silent p.Y458Y 0.28 TCGA-IA-A83S-01 9 130485525 130485525 C A TTC16 Missense_Mutation p.A262D 0.23 deleterious(0) probably_damaging(1) TCGA-IA-A83S-01 9 133768991 133768991 T A QRFP Nonsense_Mutation p.R79* 0.23 TCGA-IA-A83S-01 9 135203246 135203246 A - SETX Frame_Shift_Del p.S1247Qfs*14 0.18 TCGA-IA-A83S-01 9 137326027 137326027 G C RXRA Missense_Mutation p.K405N 0.19 deleterious(0) probably_damaging(0.957) TCGA-IA-A83S-01 9 140331202 140331202 T A ENTPD8 Missense_Mutation p.Y186F 0.33 tolerated(0.38) benign(0.033) TCGA-IA-A83S-01 9 5081774 5081774 T A JAK2 Silent p.G828G 0.20 TCGA-IA-A83S-01 9 6015593 6015593 C T RANBP6 Silent p.A5A 0.50 TCGA-IA-A83S-01 9 87359981 87359981 A - NTRK2 Frame_Shift_Del p.H430Lfs*9 0.17 TCGA-IA-A83S-01 X 108779141 108779141 G A NXT2 Silent p.Q10Q 0.55 TCGA-IA-A83S-01 X 154159622 154159622 G A F8 Nonsense_Mutation p.Q815* 0.43 TCGA-IA-A83S-01 X 30671708 30671708 G - GK Frame_Shift_Del p.G19Afs*23 0.36 TCGA-IA-A83S-01 X 51076122 51076122 A T NUDT10 Missense_Mutation p.E102V 0.51 deleterious(0) probably_damaging(0.981) TCGA-IA-A83T-01 10 108427453 108427453 C A SORCS1 Missense_Mutation p.S766I 0.24 deleterious(0) probably_damaging(0.978) TCGA-IA-A83T-01 10 70098907 70098907 T C HNRNPH3 Silent p.G149G 0.28 TCGA-IA-A83T-01 10 81901918 81901918 C G PLAC9 Missense_Mutation p.L49V 0.23 deleterious(0) possibly_damaging(0.801) TCGA-IA-A83T-01 11 121008699 121008699 G A TECTA Missense_Mutation p.V1171M 0.29 tolerated(0.29) possibly_damaging(0.79) TCGA-IA-A83T-01 11 134257614 134257614 G T B3GAT1 Intron 0.20 TCGA-IA-A83T-01 11 33163206 33163206 T C CSTF3 Intron 0.06 TCGA-IA-A83T-01 11 36631637 36631642 TGGCCT GCCC C11orf74 5'UTR 0.16 TCGA-IA-A83T-01 11 45928455 45928456 - G C11orf94 Frame_Shift_Ins p.L47Pfs*13 0.20 TCGA-IA-A83T-01 11 58723454 58723454 A G GLYATL1 Missense_Mutation p.E319G 0.21 tolerated(0.97) benign(0.001) TCGA-IA-A83T-01 11 60470856 60470856 C A MS4A8 Silent p.I75I 0.11 TCGA-IA-A83T-01 12 109520853 109520853 G A USP30 Missense_Mutation p.G385E 0.08 tolerated(0.47) benign(0.003) TCGA-IA-A83T-01 12 52981529 52981549 GCCTGGTGCAGGGCGCCCTCC T KRT72 Frame_Shift_Del p.E393Qfs*10 0.10 TCGA-IA-A83T-01 12 54106041 54106041 C A CALCOCO1 Intron 0.42 TCGA-IA-A83T-01 12 89916440 89916440 T C POC1B-GALNT4 3'UTR 0.06 TCGA-IA-A83T-01 13 28624244 28624244 G C FLT3 Missense_Mutation p.L244V 0.25 deleterious(0.04) possibly_damaging(0.688) TCGA-IA-A83T-01 13 38924058 38924058 T C UFM1 Translation_Start_Site p.M1? 0.04 deleterious_low_confidence(0) benign(0.024) TCGA-IA-A83T-01 14 102805492 102805492 C A ZNF839 Missense_Mutation p.T620N 0.23 tolerated(0.07) possibly_damaging(0.694) TCGA-IA-A83T-01 14 31061654 31061654 G C G2E3 Splice_Site p.X121_splice 0.18 TCGA-IA-A83T-01 14 35592509 35592509 C A KIAA0391 Missense_Mutation p.L20I 0.19 tolerated_low_confidence(0.11) probably_damaging(0.953) TCGA-IA-A83T-01 14 81297497 81297497 G T CEP128 Nonsense_Mutation p.S400* 0.20 TCGA-IA-A83T-01 14 91744410 91744410 G A CCDC88C Silent p.N1638N 0.12 TCGA-IA-A83T-01 14 94395093 94395093 G A FAM181A Silent p.E216E 0.18 TCGA-IA-A83T-01 15 22369316 22369316 C G OR4M2 Silent p.T247T 0.13 TCGA-IA-A83T-01 15 25926006 25926007 - T ATP10A Frame_Shift_Ins p.I1210Nfs*13 0.10 TCGA-IA-A83T-01 15 49030644 49030644 C T CEP152 Silent p.T1645T 0.19 TCGA-IA-A83T-01 15 50978726 50978726 A G TRPM7 Splice_Site p.X1_splice 0.22 TCGA-IA-A83T-01 16 1442978 1442978 C T UNKL Splice_Site p.X310_splice 0.17 TCGA-IA-A83T-01 16 24801625 24801625 C G TNRC6A Silent p.G554G 0.24 TCGA-IA-A83T-01 16 32266560 32266560 C T TP53TG3D 3'UTR 0.10 TCGA-IA-A83T-01 16 74748078 74748078 G A FA2H 3'UTR 0.26 TCGA-IA-A83T-01 17 3301172 3336576 17:3301172-3336576 - OR3A3 large deletion 0.25 TCGA-IA-A83T-01 17 38793826 38793826 T C SMARCE1 Splice_Site p.X53_splice 0.41 TCGA-IA-A83T-01 17 79845839 79845850 AAAAAAAAAAAG - ALYREF 3'UTR 0.40 TCGA-IA-A83T-01 17 80013100 80013100 T C GPS1 Splice_Site p.X290_splice 0.16 TCGA-IA-A83T-01 17 80156212 80156212 C T CCDC57 Missense_Mutation p.G165D 0.19 deleterious(0.01) possibly_damaging(0.783) TCGA-IA-A83T-01 18 12359961 12359965 ATTTT - AFG3L2 Frame_Shift_Del p.E238Afs*9 0.12 TCGA-IA-A83T-01 19 13002330 13002330 G A GCDH Missense_Mutation p.A41T 0.19 tolerated_low_confidence(0.2) benign(0.001) TCGA-IA-A83T-01 19 16545212 16545214 GAG - EPS15L1 In_Frame_Del p.L154del 0.18 TCGA-IA-A83T-01 19 36206193 36206193 C T ZBTB32 Missense_Mutation p.S222F 0.33 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-IA-A83T-01 19 38028019 38028019 T A ZNF793 Silent p.I153I 0.24 TCGA-IA-A83T-01 19 44118259 44118259 C T SRRM5 Silent p.L662L 0.29 TCGA-IA-A83T-01 19 49459013 49459013 G T BAX Missense_Mutation p.Q52H 0.32 deleterious(0.01) benign(0.369) TCGA-IA-A83T-01 19 54946848 54946848 G T TTYH1 Missense_Mutation p.A418S 0.35 tolerated(0.09) possibly_damaging(0.696) TCGA-IA-A83T-01 19 9016700 9016700 G A MUC16 Silent p.D12679D 0.26 TCGA-IA-A83T-01 19 9075870 9075870 G A MUC16 Missense_Mutation p.T3859I 0.25 unknown(0) TCGA-IA-A83T-01 1 12835275 12835275 C T PRAMEF12 Missense_Mutation p.L89F 0.29 tolerated(0.06) probably_damaging(0.986) TCGA-IA-A83T-01 1 208390484 208390484 T C PLXNA2 Missense_Mutation p.T262A 0.07 deleterious(0.01) possibly_damaging(0.879) TCGA-IA-A83T-01 1 209824413 209824413 T AA LAMB3 5'UTR 0.23 TCGA-IA-A83T-01 1 214802436 214802436 T C CENPF Silent p.S372S 0.04 TCGA-IA-A83T-01 1 225592163 225592163 G A LBR Missense_Mutation p.R544C 0.10 deleterious(0) probably_damaging(0.994) TCGA-IA-A83T-01 1 68910331 68910343 TACTCCTCGAAAG - RPE65 Frame_Shift_Del p.Y122* 0.24 TCGA-IA-A83T-01 20 33862094 33862094 G T MMP24 Missense_Mutation p.K540N 0.34 deleterious(0) possibly_damaging(0.73) TCGA-IA-A83T-01 20 43056989 43056989 G T HNF4A Missense_Mutation p.A382S 0.07 tolerated(0.32) benign(0.123) TCGA-IA-A83T-01 21 45402359 45402359 T A AGPAT3 3'UTR 0.30 TCGA-IA-A83T-01 22 29533423 29533423 G C KREMEN1 Missense_Mutation p.C242S 0.17 deleterious(0) probably_damaging(0.986) TCGA-IA-A83T-01 22 30123661 30123661 G T CABP7 Missense_Mutation p.E40D 0.14 tolerated(0.08) benign(0.024) TCGA-IA-A83T-01 22 38621517 38621517 A G TMEM184B Missense_Mutation p.F234S 0.15 tolerated(0.15) benign(0.035) TCGA-IA-A83T-01 22 44392339 44392339 A G SAMM50 3'UTR 0.28 TCGA-IA-A83T-01 2 219498727 219498727 C T PLCD4 Intron 0.30 TCGA-IA-A83T-01 2 240500144 240500144 G T AC079612.1 Nonsense_Mutation p.E9* 0.09 TCGA-IA-A83T-01 2 26781380 26781380 G A OTOF Silent p.I20I 0.24 TCGA-IA-A83T-01 2 26781388 26781388 C A OTOF Missense_Mutation p.D18Y 0.23 deleterious(0) probably_damaging(0.975) TCGA-IA-A83T-01 2 74438766 74438766 G A MTHFD2 Intron 0.22 TCGA-IA-A83T-01 3 36779671 36779671 C T DCLK3 Silent p.G160G 0.17 TCGA-IA-A83T-01 3 38908836 38908839 GTCA ATT SCN11A Frame_Shift_Del p.D1309Ifs*10 0.31 TCGA-IA-A83T-01 4 44176998 44176998 C T KCTD8 Missense_Mutation p.E411K 0.25 tolerated(0.14) probably_damaging(0.956) TCGA-IA-A83T-01 4 54140020 54140020 A - SCFD2 Frame_Shift_Del p.L429Wfs*20 0.19 TCGA-IA-A83T-01 4 95376407 95376407 T A PDLIM5 5'UTR 0.21 TCGA-IA-A83T-01 4 95376420 95376420 G A PDLIM5 5'UTR 0.18 TCGA-IA-A83T-01 5 37185181 37185181 C T C5orf42 Missense_Mutation p.G1397E 0.24 deleterious(0) probably_damaging(0.997) TCGA-IA-A83T-01 5 54528321 54528321 G A CCNO Silent p.R145R 0.22 TCGA-IA-A83T-01 6 29455103 29455103 C G MAS1L Missense_Mutation p.V193L 0.07 tolerated(0.08) benign(0.43) TCGA-IA-A83T-01 6 90573481 90573481 A G CASP8AP2 RNA 0.23 TCGA-IA-A83T-01 6 99817502 99817502 C A COQ3 Missense_Mutation p.A362S 0.23 tolerated_low_confidence(0.4) benign(0.002) TCGA-IA-A83T-01 7 111387406 111387406 T A DOCK4 Missense_Mutation p.M1495L 0.04 tolerated(0.79) benign(0.039) TCGA-IA-A83T-01 7 49815638 49815638 G C VWC2 Missense_Mutation p.D203H 0.54 deleterious(0) probably_damaging(0.931) TCGA-IA-A83T-01 7 5414035 5414035 C G TNRC18 Missense_Mutation p.K960N 0.33 probably_damaging(0.997) TCGA-IA-A83T-01 8 103301770 103301770 T G UBR5 Missense_Mutation p.N1542H 0.25 tolerated(0.15) possibly_damaging(0.804) TCGA-IA-A83T-01 8 124206353 124206353 C T FAM83A Silent p.I246I 0.22 TCGA-IA-A83T-01 8 30700918 30700918 G A TEX15 Silent p.N1872N 0.23 TCGA-IA-A83T-01 9 13125228 13125228 C T MPDZ Silent p.P1598P 0.31 TCGA-IA-A83T-01 X 106846510 106846510 T C FRMPD3 Silent p.A1780A 0.51 TCGA-IA-A83T-01 X 123229293 123229293 T A STAG2 Missense_Mutation p.D1259E 0.17 tolerated_low_confidence(0.11) probably_damaging(0.971) TCGA-IA-A83T-01 X 140270615 140270615 C A LDOC1 3'UTR 0.50 TCGA-IA-A83T-01 X 151092975 151092975 C T MAGEA4 Missense_Mutation p.A280V 0.54 tolerated(0.08) benign(0.101) TCGA-IA-A83T-01 X 3229194 3229194 G T MXRA5 Missense_Mutation p.N2350K 0.09 deleterious(0) possibly_damaging(0.876) TCGA-IA-A83V-01 10 125426156 125426156 T A GPR26 Missense_Mutation p.L78Q 0.09 deleterious(0.05) probably_damaging(0.934) TCGA-IA-A83V-01 10 35928674 35928674 C G FZD8 Missense_Mutation p.E562Q 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-IA-A83V-01 10 7423824 7423824 G A SFMBT2 Missense_Mutation p.P13S 0.20 tolerated_low_confidence(0.48) benign(0.002) TCGA-IA-A83V-01 11 117988662 117988662 T A TMPRSS4 3'UTR 0.21 TCGA-IA-A83V-01 11 14380350 14380350 C A RRAS2 Missense_Mutation p.G23C 0.37 deleterious(0) probably_damaging(1) TCGA-IA-A83V-01 11 34118208 34118208 A T CAPRIN1 Missense_Mutation p.N630Y 0.26 deleterious(0) probably_damaging(1) TCGA-IA-A83V-01 11 64882832 64882832 T - TM7SF2 Frame_Shift_Del p.F314Sfs*154 0.22 TCGA-IA-A83V-01 11 71293623 71293623 G A KRTAP5-11 Silent p.C87C 0.25 TCGA-IA-A83V-01 11 73715039 73715039 G T UCP3 Nonsense_Mutation p.C219* 0.09 TCGA-IA-A83V-01 12 13256466 13256466 G A GSG1 5'UTR 0.04 TCGA-IA-A83V-01 12 54449018 54449018 C G HOXC4 3'UTR 0.26 TCGA-IA-A83V-01 12 58010621 58010621 C G ARHGEF25 Missense_Mutation p.P602A 0.26 tolerated_low_confidence(0.38) benign(0.067) TCGA-IA-A83V-01 12 7276771 7276771 C A RBP5 Splice_Site p.X119_splice 0.15 TCGA-IA-A83V-01 12 95604677 95604677 A C FGD6 Missense_Mutation p.V128G 0.22 tolerated_low_confidence(0.34) benign(0.009) TCGA-IA-A83V-01 13 48835400 48835400 A C ITM2B 3'UTR 0.27 TCGA-IA-A83V-01 14 23240860 23240860 A G OXA1L 3'UTR 0.21 TCGA-IA-A83V-01 14 23888454 23888454 T C MYH7 Missense_Mutation p.T1302A 0.21 deleterious(0.03) possibly_damaging(0.596) TCGA-IA-A83V-01 14 36004653 36004653 C T INSM2 Nonsense_Mutation p.Q399* 0.07 TCGA-IA-A83V-01 14 73678584 73678584 C G PSEN1 Missense_Mutation p.P355A 0.21 tolerated(0.4) benign(0) TCGA-IA-A83V-01 14 94413717 94413717 C T ASB2 Missense_Mutation p.A344T 0.19 deleterious(0) probably_damaging(0.991) TCGA-IA-A83V-01 15 41066037 41066037 T A DNAJC17 Splice_Site p.X228_splice 0.26 TCGA-IA-A83V-01 15 52244078 52244078 C A LEO1 Missense_Mutation p.G525V 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-IA-A83V-01 15 75931982 75931982 C T IMP3 Silent p.E176E 0.21 TCGA-IA-A83V-01 16 19584527 19584527 C G C16orf62 Missense_Mutation p.I213M 0.15 deleterious(0) probably_damaging(0.967) TCGA-IA-A83V-01 16 48296782 48296782 T C LONP2 Silent p.T327T 0.30 TCGA-IA-A83V-01 16 67580293 67580293 G A FAM65A Missense_Mutation p.R1216Q 0.08 deleterious(0) possibly_damaging(0.553) TCGA-IA-A83V-01 16 67911255 67911255 A T EDC4 Missense_Mutation p.D196V 0.42 deleterious(0) probably_damaging(0.999) TCGA-IA-A83V-01 16 69358252 69358253 - T VPS4A 3'UTR 0.25 TCGA-IA-A83V-01 16 739631 739631 T C WDR24 Missense_Mutation p.M4V 0.42 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-IA-A83V-01 16 74808459 74808459 C A FA2H Silent p.P65P 0.31 TCGA-IA-A83V-01 17 28576025 28576025 G A BLMH 3'UTR 0.34 TCGA-IA-A83V-01 17 38249559 38249559 A G THRA Missense_Mutation p.E466G 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.727) TCGA-IA-A83V-01 17 44116537 44116537 G A KANSL1 Missense_Mutation p.H750Y 0.16 tolerated(0.16) benign(0.215) TCGA-IA-A83V-01 17 46154301 46154301 C T CBX1 Silent p.V22V 0.06 TCGA-IA-A83V-01 17 60753216 60753216 C T MRC2 Silent p.A545A 0.16 TCGA-IA-A83V-01 17 73897871 73897871 G T MRPL38 Silent p.V171V 0.45 TCGA-IA-A83V-01 18 627121 627121 T C CLUL1 Missense_Mutation p.Y150H 0.19 tolerated(0.42) benign(0.209) TCGA-IA-A83V-01 19 1255541 1255541 C T MIDN Missense_Mutation p.S326L 0.35 deleterious(0.01) benign(0.005) TCGA-IA-A83V-01 19 12817426 12817426 C T TNPO2 Missense_Mutation p.R485H 0.07 deleterious(0.02) possibly_damaging(0.697) TCGA-IA-A83V-01 19 17417255 17417255 T A MRPL34 3'UTR 0.26 TCGA-IA-A83V-01 19 19257425 19257425 G A MEF2B Silent p.C236C 0.31 TCGA-IA-A83V-01 19 19453659 19453659 G T MAU2 Missense_Mutation p.Q319H 0.06 tolerated(0.08) possibly_damaging(0.677) TCGA-IA-A83V-01 19 19545950 19545950 T A GATAD2A Intron 0.18 TCGA-IA-A83V-01 19 19626974 19627010 CTTCCGCCACACTCATCATGGCGGTGGCAGTAAGTCA - NDUFA13 5'UTR 0.12 TCGA-IA-A83V-01 19 2736862 2736862 G T SLC39A3 Intron 0.22 TCGA-IA-A83V-01 19 36250862 36250862 T C C19orf55 Missense_Mutation p.L94P 0.12 tolerated(0.24) benign(0.272) TCGA-IA-A83V-01 19 40589098 40589098 T A ZNF780A Missense_Mutation p.E19V 0.31 deleterious(0) possibly_damaging(0.447) TCGA-IA-A83V-01 19 44681813 44681816 AAAT - ZNF226 Frame_Shift_Del p.K800Lfs*2 0.14 TCGA-IA-A83V-01 19 6466818 6466818 G T CRB3 Intron 0.24 TCGA-IA-A83V-01 1 150337220 150337220 T C RPRD2 Silent p.S10S 0.12 TCGA-IA-A83V-01 1 151131378 151131378 A G TNFAIP8L2 Missense_Mutation p.K69E 0.17 deleterious(0) probably_damaging(0.959) TCGA-IA-A83V-01 1 151131379 151131379 A G TNFAIP8L2 Missense_Mutation p.K69R 0.17 deleterious(0) probably_damaging(0.957) TCGA-IA-A83V-01 1 171254631 171254631 A G FMO1 Missense_Mutation p.K516R 0.24 tolerated(0.11) probably_damaging(0.997) TCGA-IA-A83V-01 1 17277585 17277585 G T CROCC Nonsense_Mutation p.E992* 0.06 TCGA-IA-A83V-01 1 180471526 180471526 A G ACBD6 5'UTR 0.31 TCGA-IA-A83V-01 1 204394821 204394821 G A PIK3C2B Missense_Mutation p.L1546F 0.23 deleterious(0) probably_damaging(1) TCGA-IA-A83V-01 1 214832273 214832273 C A CENPF Missense_Mutation p.L3015M 0.22 probably_damaging(0.999) TCGA-IA-A83V-01 1 21616630 21616630 G A ECE1 Missense_Mutation p.A24V 0.08 deleterious(0) probably_damaging(0.997) TCGA-IA-A83V-01 1 22173002 22173002 C G HSPG2 Missense_Mutation p.G2752A 0.32 probably_damaging(0.993) TCGA-IA-A83V-01 1 228539030 228539030 A G OBSCN Missense_Mutation p.K7100R 0.28 benign(0.039) TCGA-IA-A83V-01 1 23418024 23418024 C G LUZP1 Missense_Mutation p.G911R 0.21 tolerated(0.05) benign(0.444) TCGA-IA-A83V-01 1 243328302 243328302 T G CEP170 Missense_Mutation p.K987T 0.15 tolerated(0.09) probably_damaging(0.999) TCGA-IA-A83V-01 1 51253751 51253751 C T FAF1 Silent p.R96R 0.24 TCGA-IA-A83V-01 20 32661413 32661413 C T RALY Silent p.L101L 0.05 TCGA-IA-A83V-01 20 62370295 62370295 T C LIME1 3'UTR 0.27 TCGA-IA-A83V-01 21 36206708 36206708 C T RUNX1 Silent p.Q268Q 0.22 TCGA-IA-A83V-01 22 19709805 19709805 G A SEPT5 Silent p.L332L 0.28 TCGA-IA-A83V-01 22 29696188 29696188 T - EWSR1 3'UTR 0.22 TCGA-IA-A83V-01 22 29696202 29696202 C G EWSR1 3'UTR 0.25 TCGA-IA-A83V-01 2 29072767 29072767 A G SPDYA Missense_Mutation p.K301R 0.24 tolerated_low_confidence(0.25) benign(0.05) TCGA-IA-A83V-01 2 48040432 48040432 C A FBXO11 Missense_Mutation p.R723I 0.22 deleterious(0) probably_damaging(0.995) TCGA-IA-A83V-01 2 97361397 97361397 T C FER1L5 Intron 0.26 TCGA-IA-A83V-01 3 137889003 137889003 A G DBR1 Silent p.S145S 0.21 TCGA-IA-A83V-01 3 151148131 151148131 G A MED12L Silent p.T2116T 0.29 TCGA-IA-A83V-01 3 156870895 156870895 T C CCNL1 Missense_Mutation p.Q180R 0.23 deleterious(0.01) benign(0.346) TCGA-IA-A83V-01 3 183756785 183756785 T G HTR3D 3'UTR 0.26 TCGA-IA-A83V-01 3 49694596 49694596 C T BSN Missense_Mutation p.S2536L 0.29 unknown(0) TCGA-IA-A83V-01 3 72873602 72873602 G C SHQ1 Missense_Mutation p.Q234E 0.04 tolerated(0.24) benign(0.026) TCGA-IA-A83V-01 4 148968095 148968095 A G ARHGAP10 Silent p.S640S 0.09 TCGA-IA-A83V-01 4 47033624 47033624 C A GABRB1 5'UTR 0.22 TCGA-IA-A83V-01 5 37020651 37020652 TC - NIPBL Frame_Shift_Del p.S1701* 0.18 TCGA-IA-A83V-01 5 55236856 55236856 T - IL6ST 3'UTR 0.17 TCGA-IA-A83V-01 5 82817377 82817377 T A VCAN Silent p.S1084S 0.28 TCGA-IA-A83V-01 5 96126038 96126038 A G ERAP1 Silent p.D495D 0.22 TCGA-IA-A83V-01 6 11104325 11104325 C T ERVFRD-1 Missense_Mutation p.D407N 0.23 deleterious(0.04) benign(0.313) TCGA-IA-A83V-01 6 36452575 36452575 T A KCTD20 Missense_Mutation p.L314Q 0.28 deleterious(0) probably_damaging(0.99) TCGA-IA-A83V-01 6 90047953 90047953 A T UBE2J1 Silent p.T133T 0.18 TCGA-IA-A83V-01 8 48815308 48815308 A T PRKDC Silent p.G1030G 0.17 TCGA-IA-A83V-01 8 87242578 87242578 G A SLC7A13 5'UTR 0.33 TCGA-IA-A83V-01 9 112705668 112705668 A - PALM2 Frame_Shift_Del p.K401Rfs*? 0.15 TCGA-IA-A83V-01 9 131670698 131670698 C T LRRC8A Missense_Mutation p.R419W 0.07 deleterious(0.01) probably_damaging(0.93) TCGA-IA-A83V-01 9 134379628 134379628 C T POMT1 Missense_Mutation p.P8L 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-IA-A83V-01 9 137023173 137023173 A T WDR5 3'UTR 0.23 TCGA-IA-A83V-01 9 32784670 32784670 C T TMEM215 Silent p.D163D 0.06 TCGA-IA-A83V-01 X 154299852 154299852 A G BRCC3 Missense_Mutation p.D17G 0.56 deleterious(0) probably_damaging(0.986) TCGA-IA-A83V-01 X 44023273 44023273 C T EFHC2 Silent p.R681R 0.03 TCGA-IA-A83W-01 10 126384767 126384767 C T FAM53B Silent p.K31K 0.27 TCGA-IA-A83W-01 11 106810476 106810476 G A GUCY1A2 Missense_Mutation p.P306S 0.36 tolerated(0.19) benign(0.007) TCGA-IA-A83W-01 11 113570711 113570711 G A TMPRSS5 Intron 0.31 TCGA-IA-A83W-01 11 124252506 124266524 11:124252506-124266524 - OR8B2 large deletion 0.17 TCGA-IA-A83W-01 11 124494840 124494840 T C TBRG1 Missense_Mutation p.I55T 0.36 deleterious(0) benign(0.169) TCGA-IA-A83W-01 11 3114204 3114204 C T OSBPL5 Silent p.E675E 0.49 TCGA-IA-A83W-01 11 58723514 58723514 T G GLYATL1 3'UTR 0.24 TCGA-IA-A83W-01 11 70830072 70830072 T C SHANK2 Missense_Mutation p.I72V 0.35 deleterious(0.02) benign(0.205) TCGA-IA-A83W-01 12 122751031 122751031 C T VPS33A 5'UTR 0.26 TCGA-IA-A83W-01 12 8245557 8245557 A T NECAP1 Missense_Mutation p.K194N 0.16 deleterious(0.05) probably_damaging(0.951) TCGA-IA-A83W-01 12 95907704 95907704 A G METAP2 3'UTR 0.15 TCGA-IA-A83W-01 12 98992382 98992382 C T SLC25A3 Missense_Mutation p.P182L 0.22 deleterious(0.02) probably_damaging(1) TCGA-IA-A83W-01 13 95254241 95254241 C A GPR180 Missense_Mutation p.S20R 0.08 deleterious(0.03) benign(0.028) TCGA-IA-A83W-01 14 21860710 21860710 G - CHD8 Frame_Shift_Del p.R2243Afs*19 0.20 TCGA-IA-A83W-01 14 73440818 73440818 C A ZFYVE1 Missense_Mutation p.A691S 0.09 tolerated(0.06) benign(0.04) TCGA-IA-A83W-01 14 74532073 74532073 G A CCDC176 3'UTR 0.39 TCGA-IA-A83W-01 15 42111022 42111022 T C MAPKBP1 Missense_Mutation p.C726R 0.29 deleterious(0) probably_damaging(0.963) TCGA-IA-A83W-01 15 44093966 44093966 G C HYPK Missense_Mutation p.G118R 0.38 deleterious(0) probably_damaging(0.969) TCGA-IA-A83W-01 15 67482977 67482979 AAA - SMAD3 3'UTR 0.47 TCGA-IA-A83W-01 15 82337942 82337942 C T MEX3B Silent p.Q35Q 0.41 TCGA-IA-A83W-01 16 3119039 3119039 G A IL32 Missense_Mutation p.G84S 0.11 tolerated(0.22) possibly_damaging(0.791) TCGA-IA-A83W-01 16 3351053 3351053 G T TIGD7 5'UTR 0.44 TCGA-IA-A83W-01 16 76574667 76574667 T C CNTNAP4 Missense_Mutation p.L1068P 0.33 deleterious(0) probably_damaging(0.996) TCGA-IA-A83W-01 16 84529314 84529314 G A TLDC1 Missense_Mutation p.P120L 0.06 deleterious(0.03) benign(0.04) TCGA-IA-A83W-01 16 87367551 87367551 G - FBXO31 Frame_Shift_Del p.F446Lfs*7 0.29 TCGA-IA-A83W-01 17 11696924 11696924 A T DNAH9 Missense_Mutation p.E2722D 0.34 benign(0.005) TCGA-IA-A83W-01 17 36891741 36891741 T C PCGF2 Missense_Mutation p.E257G 0.47 deleterious(0.01) benign(0.206) TCGA-IA-A83W-01 17 37431305 37431305 A T FBXL20 Missense_Mutation p.L249I 0.21 deleterious(0.02) probably_damaging(0.962) TCGA-IA-A83W-01 17 38519850 38519850 G A CTD-2267D19.3 Missense_Mutation p.G221E 0.53 tolerated_low_confidence(0.28) probably_damaging(0.969) TCGA-IA-A83W-01 17 40695970 40695970 G - NAGLU Frame_Shift_Del p.P651Qfs*156 0.33 TCGA-IA-A83W-01 17 42941114 42941114 G A EFTUD2 Missense_Mutation p.P441L 0.26 deleterious(0) possibly_damaging(0.901) TCGA-IA-A83W-01 17 4510828 4510828 G C SMTNL2 3'UTR 0.32 TCGA-IA-A83W-01 17 4800732 4800732 T C MINK1 3'UTR 0.40 TCGA-IA-A83W-01 17 48541192 48541192 T C ACSF2 Missense_Mutation p.Y354H 0.22 tolerated(0.43) benign(0.17) TCGA-IA-A83W-01 17 71253923 71253923 G A CPSF4L Silent p.C68C 0.26 TCGA-IA-A83W-01 17 8404148 8404148 T G MYH10 Missense_Mutation p.K1247T 0.36 benign(0.431) TCGA-IA-A83W-01 18 19438539 19438539 A - MIB1 Frame_Shift_Del p.K938Rfs*30 0.24 TCGA-IA-A83W-01 18 56246675 56246675 C T ALPK2 Missense_Mutation p.E445K 0.40 deleterious(0.02) benign(0.175) TCGA-IA-A83W-01 19 15349622 15349622 G A BRD4 Nonsense_Mutation p.Q1318* 0.43 TCGA-IA-A83W-01 19 17974057 17974058 - A RPL18A Frame_Shift_Ins p.N173Kfs*? 0.15 TCGA-IA-A83W-01 19 3492339 3492339 C A DOHH Silent p.R170R 0.36 TCGA-IA-A83W-01 19 39214666 39214666 C T ACTN4 Silent p.A547A 0.34 TCGA-IA-A83W-01 19 49703978 49703978 G A TRPM4 Silent p.L963L 0.19 TCGA-IA-A83W-01 19 8993026 8993026 G A MUC16 Silent p.S13911S 0.28 TCGA-IA-A83W-01 1 12567023 12567023 A G VPS13D Missense_Mutation p.Y4304C 0.21 probably_damaging(0.993) TCGA-IA-A83W-01 1 145562167 145562167 G T ANKRD35 Missense_Mutation p.V619L 0.25 tolerated(0.07) benign(0.001) TCGA-IA-A83W-01 1 151079554 151079554 T C GABPB2 Missense_Mutation p.S260P 0.22 tolerated(0.07) benign(0.421) TCGA-IA-A83W-01 1 155178955 155178963 GATCGGAGG - MTX1 In_Frame_Del p.I121_G123del 0.25 TCGA-IA-A83W-01 1 171250023 171250023 G A FMO1 Missense_Mutation p.M242I 0.35 tolerated(0.14) benign(0.049) TCGA-IA-A83W-01 1 201817627 201817627 G T IPO9 Missense_Mutation p.W140L 0.36 deleterious(0) probably_damaging(0.971) TCGA-IA-A83W-01 1 26497098 26497098 A T ZNF593 Missense_Mutation p.Q99L 0.14 tolerated(0.72) benign(0.111) TCGA-IA-A83W-01 1 38032509 38032509 T G GNL2 Missense_Mutation p.N715H 0.29 tolerated_low_confidence(0.07) benign(0.429) TCGA-IA-A83W-01 1 39798341 39798341 C A MACF1 Intron 0.33 TCGA-IA-A83W-01 1 62189391 62189395 CTGTG T TM2D1 Nonsense_Mutation p.Y138* 0.22 TCGA-IA-A83W-01 20 57035951 57035951 C A APCDD1L Missense_Mutation p.Q467H 0.32 tolerated(0.17) benign(0.444) TCGA-IA-A83W-01 21 30257571 30257571 A T N6AMT1 Missense_Mutation p.L33M 0.42 benign(0.14) TCGA-IA-A83W-01 21 46596440 46596440 A G ADARB1 Missense_Mutation p.E275G 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-IA-A83W-01 22 32756168 32756169 - T RFPL3S 3'UTR 0.28 TCGA-IA-A83W-01 22 41985816 41985816 A G PMM1 5'UTR 0.13 TCGA-IA-A83W-01 22 42610419 42610419 T C TCF20 Missense_Mutation p.K298R 0.30 probably_damaging(0.995) TCGA-IA-A83W-01 2 101437606 101437606 C T NPAS2 Intron 0.36 TCGA-IA-A83W-01 2 152695725 152695725 C A CACNB4 Missense_Mutation p.D491Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-IA-A83W-01 2 201814321 201814321 T A ORC2 Missense_Mutation p.Y95F 0.34 tolerated(0.65) benign(0.023) TCGA-IA-A83W-01 2 217528687 217528687 C T IGFBP2 Missense_Mutation p.R280C 0.29 deleterious(0) probably_damaging(0.999) TCGA-IA-A83W-01 2 220477901 220477901 G A STK11IP Missense_Mutation p.V842M 0.46 deleterious(0.02) benign(0.028) TCGA-IA-A83W-01 2 232319741 232319741 G A NCL 3'UTR 0.67 TCGA-IA-A83W-01 2 32754825 32754825 T C BIRC6 Missense_Mutation p.S4010P 0.43 probably_damaging(0.942) TCGA-IA-A83W-01 2 66662943 66662943 A T MEIS1 5'UTR 0.32 TCGA-IA-A83W-01 2 98173419 98173419 G T ANKRD36B RNA 0.11 TCGA-IA-A83W-01 3 113505219 113505219 T C ATP6V1A Silent p.D235D 0.46 TCGA-IA-A83W-01 3 135870914 135870914 A G MSL2 Missense_Mutation p.V270A 0.19 deleterious(0.03) probably_damaging(0.986) TCGA-IA-A83W-01 3 160018773 160018773 A - IFT80 Frame_Shift_Del p.S405Hfs*8 0.31 TCGA-IA-A83W-01 3 193335033 193335033 T C OPA1 Missense_Mutation p.I172T 0.11 tolerated(0.26) benign(0.002) TCGA-IA-A83W-01 3 27442329 27442329 T G SLC4A7 Missense_Mutation p.N776H 0.41 deleterious(0) possibly_damaging(0.905) TCGA-IA-A83W-01 3 37365357 37365357 A G GOLGA4 Silent p.K682K 0.30 TCGA-IA-A83W-01 3 5025187 5025187 T C BHLHE40 Missense_Mutation p.V350A 0.47 tolerated(0.08) benign(0.01) TCGA-IA-A83W-01 3 52677267 52677267 T C PBRM1 Missense_Mutation p.Y331C 0.34 tolerated(0.18) possibly_damaging(0.878) TCGA-IA-A83W-01 4 85708817 85708817 G A WDFY3 Missense_Mutation p.P1240L 0.38 deleterious(0.02) benign(0.039) TCGA-IA-A83W-01 5 138714323 138714323 G A SLC23A1 Missense_Mutation p.T379M 0.10 deleterious(0) probably_damaging(0.953) TCGA-IA-A83W-01 5 175530235 175530235 A T FAM153B Missense_Mutation p.I147F 0.20 tolerated_low_confidence(0.36) benign(0.188) TCGA-IA-A83W-01 5 93077053 93077053 G A POU5F2 Missense_Mutation p.R73W 0.35 tolerated(0.19) possibly_damaging(0.689) TCGA-IA-A83W-01 6 15513599 15513599 G A JARID2 Silent p.L1132L 0.50 TCGA-IA-A83W-01 6 26271347 26271347 G T HIST1H3G Missense_Mutation p.A89E 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IA-A83W-01 6 41908179 41908179 C G CCND3 Missense_Mutation p.E115Q 0.39 deleterious(0.01) probably_damaging(0.969) TCGA-IA-A83W-01 6 43273522 43273522 T A CRIP3 3'UTR 0.33 TCGA-IA-A83W-01 6 52993306 52993306 A G GCM1 Missense_Mutation p.F337L 0.27 tolerated(0.7) benign(0) TCGA-IA-A83W-01 6 53516723 53516723 G A KLHL31 Silent p.R526R 0.33 TCGA-IA-A83W-01 7 116423474 116423474 T C MET Missense_Mutation p.M1268T 0.40 deleterious(0) probably_damaging(0.999) TCGA-IA-A83W-01 7 128477509 128477509 T C FLNC Missense_Mutation p.Y253H 0.10 deleterious(0) probably_damaging(1) TCGA-IA-A83W-01 7 140218389 140218389 C T DENND2A 3'UTR 0.36 TCGA-IA-A83W-01 7 6864148 6864148 A T CCZ1B Missense_Mutation p.L84I 0.28 deleterious(0.03) benign(0.267) TCGA-IA-A83W-01 7 99527002 99527002 A G GJC3 Missense_Mutation p.V81A 0.49 deleterious(0) probably_damaging(0.942) TCGA-IA-A83W-01 8 103284754 103284754 T G UBR5 Intron 0.34 TCGA-IA-A83W-01 8 12881932 12881932 T A KIAA1456 3'UTR 0.36 TCGA-IA-A83W-01 8 26220333 26220333 G A PPP2R2A Silent p.R267R 0.32 TCGA-IA-A83W-01 8 70964477 70964477 G T PRDM14 Missense_Mutation p.F517L 0.39 deleterious(0) possibly_damaging(0.856) TCGA-IA-A83W-01 8 75924686 75924686 G T CRISPLD1 Nonsense_Mutation p.E93* 0.39 TCGA-IA-A83W-01 9 139735260 139735273 ATGTGACTGAGGCC - RABL6 3'UTR 0.18 TCGA-IA-A83W-01 9 35605737 35605737 T A TESK1 Missense_Mutation p.Y41N 0.53 deleterious(0.02) possibly_damaging(0.461) TCGA-IA-A83W-01 9 71394964 71394964 G T FAM122A 5'UTR 0.31 TCGA-IA-A83W-01 9 744586 744586 T G KANK1 Silent p.S1331S 0.33 TCGA-IA-A83W-01 9 88937898 88937898 G T ZCCHC6 Missense_Mutation p.L923I 0.41 deleterious(0.02) benign(0.118) TCGA-IA-A83W-01 X 140992833 140992833 G A MAGEC1 5'UTR 0.64 TCGA-IZ-8195-01 10 103563517 103563517 A G MGEA5 Silent p.N337N 0.08 TCGA-IZ-8195-01 10 1061760 1061760 C A GTPBP4 Missense_Mutation p.A559D 0.34 tolerated(0.38) benign(0.021) TCGA-IZ-8195-01 10 3822362 3822362 C T KLF6 Missense_Mutation p.E246K 0.28 deleterious(0) benign(0.252) TCGA-IZ-8195-01 10 7829859 7829859 G C KIN Missense_Mutation p.A13G 0.45 tolerated(0.12) benign(0.025) TCGA-IZ-8195-01 11 129817185 129817185 G A PRDM10 Silent p.T125T 0.36 TCGA-IZ-8195-01 11 55761615 55761615 C T OR5F1 Missense_Mutation p.V163I 0.43 tolerated(0.64) benign(0.075) TCGA-IZ-8195-01 11 55761636 55761636 A C OR5F1 Missense_Mutation p.F156V 0.32 deleterious(0) benign(0) TCGA-IZ-8195-01 11 6662595 6662595 C G DCHS1 Missense_Mutation p.E84Q 0.40 deleterious(0.04) possibly_damaging(0.562) TCGA-IZ-8195-01 11 67205713 67205713 C T CORO1B 3'UTR 0.32 TCGA-IZ-8195-01 11 76903188 76903188 C T MYO7A Silent p.N1339N 0.45 TCGA-IZ-8195-01 12 112668608 112668608 G A HECTD4 Silent p.P1927P 0.31 TCGA-IZ-8195-01 12 57573720 57573720 G A LRP1 Missense_Mutation p.V1708I 0.41 benign(0.345) TCGA-IZ-8195-01 13 25823587 25823587 G C MTMR6 Missense_Mutation p.T550S 0.43 tolerated(0.71) benign(0.002) TCGA-IZ-8195-01 13 98652854 98652854 G A IPO5 Missense_Mutation p.V373I 0.52 tolerated(0.65) benign(0.019) TCGA-IZ-8195-01 13 99037979 99037979 A C FARP1 Missense_Mutation p.M224L 0.35 tolerated(0.27) benign(0.04) TCGA-IZ-8195-01 14 95058764 95058764 A T SERPINA5 3'UTR 0.45 TCGA-IZ-8195-01 15 33961646 33961646 T C RYR3 Missense_Mutation p.L1904P 0.39 benign(0.303) TCGA-IZ-8195-01 15 35085735 35085735 G A ACTC1 Silent p.Y55Y 0.46 TCGA-IZ-8195-01 15 39885784 39885784 T C THBS1 Missense_Mutation p.L1061P 0.38 deleterious(0) probably_damaging(0.967) TCGA-IZ-8195-01 15 77759508 77759508 C A HMG20A Silent p.P103P 0.34 TCGA-IZ-8195-01 15 90118913 90118913 C A TICRR Silent p.T32T 0.31 TCGA-IZ-8195-01 16 2258565 2258565 C T MLST8 Silent p.G271G 0.23 TCGA-IZ-8195-01 16 30094761 30094761 G A PPP4C Missense_Mutation p.S117N 0.60 deleterious(0) possibly_damaging(0.692) TCGA-IZ-8195-01 16 47189669 47189669 T - ITFG1 Frame_Shift_Del p.K600Nfs*30 0.26 TCGA-IZ-8195-01 16 71663293 71663293 T A MARVELD3 Missense_Mutation p.L164Q 0.05 tolerated(0.08) benign(0.047) TCGA-IZ-8195-01 17 3550808 3550808 C T CTNS Silent p.L44L 0.15 TCGA-IZ-8195-01 17 36486249 36486249 A C GPR179 Missense_Mutation p.I1068S 0.25 tolerated(0.44) benign(0.164) TCGA-IZ-8195-01 17 38173269 38173269 G C CSF3 3'UTR 0.56 TCGA-IZ-8195-01 17 5983820 5983820 T A WSCD1 5'UTR 0.64 TCGA-IZ-8195-01 17 80543893 80543893 C - FOXK2 Frame_Shift_Del p.P465Hfs*62 0.22 TCGA-IZ-8195-01 17 916353 916353 T C ABR Missense_Mutation p.M615V 0.30 tolerated(0.07) benign(0.076) TCGA-IZ-8195-01 18 47369741 47369741 G A MYO5B Missense_Mutation p.S1494L 0.07 tolerated(0.12) benign(0.002) TCGA-IZ-8195-01 19 39787490 39787490 T G IFNL1 Missense_Mutation p.F73V 0.40 deleterious(0) possibly_damaging(0.879) TCGA-IZ-8195-01 19 42814766 42814766 C T PRR19 Silent p.P315P 0.38 TCGA-IZ-8195-01 19 46317875 46317875 G C RSPH6A Missense_Mutation p.A187G 0.35 tolerated_low_confidence(0.38) benign(0.001) TCGA-IZ-8195-01 19 57325186 57325186 A G PEG3 Missense_Mutation p.C1542R 0.28 tolerated(0.24) benign(0.26) TCGA-IZ-8195-01 19 58384658 58384660 CTT - ZNF814 In_Frame_Del p.K700del 0.41 TCGA-IZ-8195-01 1 104203011 104203011 C T AMY1A Missense_Mutation p.P303L 0.37 deleterious(0) possibly_damaging(0.713) TCGA-IZ-8195-01 1 15987648 15987648 T C RSC1A1 Silent p.L429L 0.45 TCGA-IZ-8195-01 1 180885553 180885553 C T KIAA1614 Missense_Mutation p.S105F 0.42 deleterious(0.03) benign(0.072) TCGA-IZ-8195-01 1 185094118 185094118 T A TRMT1L Missense_Mutation p.S573C 0.38 deleterious(0.02) possibly_damaging(0.84) TCGA-IZ-8195-01 1 247737622 247737622 T C GCSAML Missense_Mutation p.S116P 0.39 tolerated(0.16) possibly_damaging(0.461) TCGA-IZ-8195-01 1 248344277 248344277 A - OR2M2 Frame_Shift_Del p.S331Pfs*10 0.21 TCGA-IZ-8195-01 1 3566564 3566564 G A WRAP73 5'UTR 0.62 TCGA-IZ-8195-01 1 64117371 64117371 G A PGM1 Missense_Mutation p.A456T 0.08 deleterious(0.03) possibly_damaging(0.811) TCGA-IZ-8195-01 20 35532631 35532631 T C SAMHD1 Missense_Mutation p.K478E 0.59 tolerated(0.63) benign(0.001) TCGA-IZ-8195-01 20 44054581 44054581 C T PIGT 3'UTR 0.29 TCGA-IZ-8195-01 22 24659515 24659515 G A POM121L9P RNA 0.33 TCGA-IZ-8195-01 2 149248040 149248040 A C MBD5 Silent p.P1380P 0.46 TCGA-IZ-8195-01 2 223066673 223066673 C T PAX3 Silent p.Q470Q 0.08 TCGA-IZ-8195-01 2 27888159 27888159 A G SLC4A1AP Missense_Mutation p.M340V 0.46 deleterious(0) possibly_damaging(0.688) TCGA-IZ-8195-01 2 54080607 54080607 A G GPR75 Silent p.S429S 0.26 TCGA-IZ-8195-01 2 85875075 85875075 T G USP39 Nonsense_Mutation p.L529* 0.42 TCGA-IZ-8195-01 2 9528579 9528579 T C ASAP2 Missense_Mutation p.Y763H 0.42 deleterious(0.04) probably_damaging(0.987) TCGA-IZ-8195-01 2 9634940 9634940 C T ADAM17 Intron 0.37 TCGA-IZ-8195-01 3 130292932 130292932 T A COL6A6 Missense_Mutation p.V1037E 0.47 deleterious(0) possibly_damaging(0.872) TCGA-IZ-8195-01 3 48690562 48690562 A C CELSR3 Missense_Mutation p.L1836R 0.44 deleterious(0.01) probably_damaging(1) TCGA-IZ-8195-01 3 50127851 50127851 A G RBM5 5'UTR 0.46 TCGA-IZ-8195-01 4 110415933 110415933 A G SEC24B Missense_Mutation p.Y470C 0.42 deleterious(0) possibly_damaging(0.873) TCGA-IZ-8195-01 4 123848831 123848831 A G SPATA5 Missense_Mutation p.H69R 0.46 deleterious(0.01) benign(0.028) TCGA-IZ-8195-01 4 154215496 154215496 A T TRIM2 Missense_Mutation p.E215D 0.39 tolerated(0.16) benign(0.008) TCGA-IZ-8195-01 4 155225827 155225827 T C DCHS2 Missense_Mutation p.I1412V 0.48 deleterious(0.04) benign(0.133) TCGA-IZ-8195-01 4 187539116 187539116 A G FAT1 Missense_Mutation p.L2875P 0.38 probably_damaging(0.999) TCGA-IZ-8195-01 4 26737100 26737100 T A TBC1D19 Missense_Mutation p.S370T 0.29 tolerated(0.75) benign(0.378) TCGA-IZ-8195-01 4 3519768 3519768 A G LRPAP1 Silent p.T248T 0.28 TCGA-IZ-8195-01 4 88029381 88029381 G T AFF1 Missense_Mutation p.D483Y 0.36 deleterious(0) unknown(0) TCGA-IZ-8195-01 5 118500212 118500213 - AGTCATTT DMXL1 Frame_Shift_Ins p.F1574Lfs*11 0.34 TCGA-IZ-8195-01 5 1219640 1219640 T C SLC6A19 Missense_Mutation p.F467L 0.39 tolerated(0.22) benign(0.008) TCGA-IZ-8195-01 5 14497016 14497016 C A TRIO Missense_Mutation p.R2637S 0.43 unknown(0) TCGA-IZ-8195-01 5 157075894 157075894 A T SOX30 Missense_Mutation p.D326E 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-IZ-8195-01 5 177580732 177580732 G T NHP2 Silent p.V29V 0.53 TCGA-IZ-8195-01 5 179193185 179193185 G T MAML1 Nonsense_Mutation p.E392* 0.25 TCGA-IZ-8195-01 5 179320371 179320371 T A TBC1D9B Missense_Mutation p.E225V 0.35 deleterious(0.03) possibly_damaging(0.781) TCGA-IZ-8195-01 5 67593619 67593619 C T PIK3R1 3'UTR 0.30 TCGA-IZ-8195-01 5 74892358 74892358 G C POLK Missense_Mutation p.E614Q 0.45 tolerated(0.55) benign(0.288) TCGA-IZ-8195-01 5 78426847 78426847 A G BHMT Missense_Mutation p.K377E 0.32 deleterious_low_confidence(0.03) benign(0.002) TCGA-IZ-8195-01 5 80040402 80040402 G A MSH3 Silent p.K577K 0.39 TCGA-IZ-8195-01 6 106968989 106968991 TCT - AIM1 In_Frame_Del p.L896del 0.40 TCGA-IZ-8195-01 6 13307966 13307966 A C TBC1D7 Missense_Mutation p.F177L 0.30 tolerated(1) benign(0.002) TCGA-IZ-8195-01 6 135644423 135644423 C A AHI1 Nonsense_Mutation p.E1069* 0.46 TCGA-IZ-8195-01 6 139251190 139251190 G C REPS1 Missense_Mutation p.A394G 0.46 tolerated(0.08) benign(0.026) TCGA-IZ-8195-01 6 24403218 24403218 C A MRS2 5'UTR 0.44 TCGA-IZ-8195-01 6 87928395 87928395 A - ZNF292 Frame_Shift_Del p.N163Tfs*18 0.33 TCGA-IZ-8195-01 7 142983611 142983611 T C TMEM139 Missense_Mutation p.Y114H 0.31 deleterious(0) probably_damaging(0.999) TCGA-IZ-8195-01 7 27147884 27147884 G A HOXA3 Missense_Mutation p.R328C 0.29 deleterious(0) benign(0.337) TCGA-IZ-8195-01 7 48411809 48411809 C A ABCA13 Silent p.A3616A 0.37 TCGA-IZ-8195-01 8 145732311 145732312 - A GPT Frame_Shift_Ins p.L474Ifs*73 0.26 TCGA-IZ-8195-01 8 61192348 61192348 C T CA8 Silent p.S64S 0.64 TCGA-IZ-8195-01 8 86157973 86157973 C A CA13 5'UTR 0.29 TCGA-IZ-8195-01 9 111853340 111853340 G A TMEM245 Nonsense_Mutation p.R338* 0.16 TCGA-IZ-8195-01 9 135447853 135447853 G A C9orf171 Missense_Mutation p.V307M 0.47 deleterious(0.02) probably_damaging(0.964) TCGA-IZ-8195-01 9 139273027 139273027 C G SNAPC4 Silent p.G1084G 0.20 TCGA-IZ-8195-01 9 70490003 70490003 C A CBWD5 Missense_Mutation p.L22F 0.32 deleterious(0.03) benign(0.386) TCGA-IZ-8195-01 9 79229437 79229437 C A PRUNE2 3'UTR 0.37 TCGA-IZ-8195-01 9 86258769 86258769 G T IDNK 3'UTR 0.27 TCGA-IZ-8196-01 10 16556595 16556595 C T C1QL3 Missense_Mutation p.G234R 0.39 tolerated(0.07) probably_damaging(0.999) TCGA-IZ-8196-01 10 33201013 33201013 G - ITGB1 Frame_Shift_Del p.S503Rfs*64 0.29 TCGA-IZ-8196-01 10 45644221 45644221 A G RP11-445N18.7 RNA 0.37 TCGA-IZ-8196-01 10 5788364 5788364 T C FAM208B Missense_Mutation p.S994P 0.48 deleterious(0.04) possibly_damaging(0.452) TCGA-IZ-8196-01 10 70152941 70152941 T A RUFY2 Missense_Mutation p.I237L 0.20 deleterious(0.03) benign(0.016) TCGA-IZ-8196-01 10 70152944 70152944 C T RUFY2 Missense_Mutation p.A236T 0.20 tolerated(0.16) possibly_damaging(0.844) TCGA-IZ-8196-01 11 1097183 1097183 T G MUC2 Missense_Mutation p.V2200G 0.42 unknown(0) TCGA-IZ-8196-01 11 113078684 113078684 G C NCAM1 Missense_Mutation p.K351N 0.38 deleterious(0) benign(0.352) TCGA-IZ-8196-01 11 43342441 43342441 T C API5 Missense_Mutation p.I101T 0.45 tolerated(0.12) possibly_damaging(0.811) TCGA-IZ-8196-01 11 62488862 62488862 T C HNRNPUL2 Missense_Mutation p.K506E 0.41 tolerated(0.17) benign(0.007) TCGA-IZ-8196-01 11 6638089 6638089 A - TPP1 Frame_Shift_Del p.F230Sfs*28 0.39 TCGA-IZ-8196-01 11 803185 803185 G T PIDD Missense_Mutation p.P233Q 0.50 deleterious(0) probably_damaging(1) TCGA-IZ-8196-01 11 82877727 82877727 A G PCF11 Silent p.R596R 0.48 TCGA-IZ-8196-01 12 112227694 112227694 T C ALDH2 Missense_Mutation p.Y170H 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-IZ-8196-01 12 121437158 121437158 T C HNF1A Missense_Mutation p.L530P 0.46 deleterious(0) probably_damaging(0.992) TCGA-IZ-8196-01 12 3647746 3647746 G T PRMT8 Intron 0.37 TCGA-IZ-8196-01 12 53687232 53687232 T C ESPL1 Missense_Mutation p.Y2113H 0.47 deleterious(0) probably_damaging(1) TCGA-IZ-8196-01 12 8211578 8211578 G A C3AR1 Missense_Mutation p.L402F 0.11 tolerated(1) benign(0.002) TCGA-IZ-8196-01 12 89743102 89743107 CTGGAA - DUSP6 In_Frame_Del p.V357_P358del 0.40 TCGA-IZ-8196-01 13 32907353 32907353 A C BRCA2 Missense_Mutation p.I580L 0.52 tolerated(0.12) possibly_damaging(0.602) TCGA-IZ-8196-01 13 47354151 47354151 A G ESD Silent p.A173A 0.43 TCGA-IZ-8196-01 14 103438368 103438368 T A CDC42BPB Missense_Mutation p.K591M 0.46 deleterious(0.01) probably_damaging(0.945) TCGA-IZ-8196-01 14 105353612 105353612 T G CEP170B Missense_Mutation p.H1012Q 0.38 tolerated(0.1) benign(0.001) TCGA-IZ-8196-01 14 20666034 20666034 C T OR11G2 Silent p.T180T 0.33 TCGA-IZ-8196-01 14 58563683 58563683 C G C14orf37 Missense_Mutation p.E616D 0.48 tolerated(0.08) benign(0.046) TCGA-IZ-8196-01 14 64596614 64596614 T A SYNE2 Missense_Mutation p.L4712I 0.45 probably_damaging(0.998) TCGA-IZ-8196-01 14 89307438 89307438 T A TTC8 Missense_Mutation p.S129R 0.43 deleterious(0.04) possibly_damaging(0.571) TCGA-IZ-8196-01 15 43928412 43928412 A G CATSPER2 Missense_Mutation p.L283P 0.38 deleterious(0.05) benign(0.33) TCGA-IZ-8196-01 15 73590713 73590713 C T NEO1 Missense_Mutation p.T1309I 0.50 deleterious(0.02) possibly_damaging(0.653) TCGA-IZ-8196-01 15 78755356 78755356 T A IREB2 Missense_Mutation p.L67I 0.41 tolerated(0.19) probably_damaging(0.915) TCGA-IZ-8196-01 15 93007607 93007607 G A ST8SIA2 Missense_Mutation p.A374T 0.41 benign(0.101) TCGA-IZ-8196-01 16 30456715 30456715 A G SEPHS2 Missense_Mutation p.F112L 0.56 benign(0.001) TCGA-IZ-8196-01 16 30733503 30733505 CAG AA SRCAP Frame_Shift_Del p.A1201Efs*16 0.30 TCGA-IZ-8196-01 16 61851550 61851550 C T CDH8 Silent p.G370G 0.48 TCGA-IZ-8196-01 16 66887456 66887456 G A CA7 3'UTR 0.50 TCGA-IZ-8196-01 16 88872437 88872437 G A CDT1 Missense_Mutation p.G281R 0.36 tolerated(0.1) possibly_damaging(0.637) TCGA-IZ-8196-01 16 89346729 89346729 T G ANKRD11 Missense_Mutation p.E2074A 0.09 benign(0.427) TCGA-IZ-8196-01 16 89346757 89346757 A G ANKRD11 Missense_Mutation p.F2065L 0.07 benign(0.257) TCGA-IZ-8196-01 17 12016635 12016635 T C MAP2K4 Silent p.S257S 0.64 TCGA-IZ-8196-01 17 40695935 40695935 C T NAGLU Silent p.F637F 0.50 TCGA-IZ-8196-01 17 42117589 42117589 C T LSM12 Silent p.K98K 0.59 TCGA-IZ-8196-01 19 14518917 14518918 - A CD97 Frame_Shift_Ins p.E832Rfs*55 0.30 TCGA-IZ-8196-01 19 2249551 2249551 G T AMH Missense_Mutation p.G74W 0.50 deleterious(0) probably_damaging(0.979) TCGA-IZ-8196-01 19 2255343 2255343 G A JSRP1 Intron 0.47 TCGA-IZ-8196-01 1 110882978 110882978 T C RBM15 Silent p.P317P 0.44 TCGA-IZ-8196-01 1 145561688 145561688 A G ANKRD35 Missense_Mutation p.Q459R 0.43 deleterious(0.04) benign(0.006) TCGA-IZ-8196-01 1 152748940 152748940 A T LCE1F Silent p.P31P 0.05 TCGA-IZ-8196-01 1 154314963 154314972 GTTTGACGTC CCTT ATP8B2 In_Frame_Del p.F451_V453delinsL 0.24 TCGA-IZ-8196-01 1 15956839 15956839 C T DDI2 Silent p.F96F 0.49 TCGA-IZ-8196-01 1 166974561 166974561 C A MAEL Missense_Mutation p.L258I 0.46 tolerated(0.25) benign(0.045) TCGA-IZ-8196-01 1 205028742 205028742 C A CNTN2 Silent p.A243A 0.35 TCGA-IZ-8196-01 1 247070995 247070995 C T AHCTF1 Missense_Mutation p.G217R 0.46 tolerated(0.07) possibly_damaging(0.749) TCGA-IZ-8196-01 1 248112473 248112473 C T OR2L8 Missense_Mutation p.A105V 0.36 deleterious(0.03) benign(0.007) TCGA-IZ-8196-01 1 76269502 76269502 G A MSH4 Missense_Mutation p.D111N 0.48 tolerated(0.49) benign(0.013) TCGA-IZ-8196-01 1 90180228 90180228 C A LRRC8C Missense_Mutation p.P700H 0.37 tolerated(0.06) probably_damaging(0.998) TCGA-IZ-8196-01 20 1286555 1286555 C T SNPH Missense_Mutation p.R448W 0.55 deleterious(0) probably_damaging(0.988) TCGA-IZ-8196-01 20 60705292 60705292 G A LSM14B Missense_Mutation p.A205T 0.45 tolerated(0.51) benign(0.004) TCGA-IZ-8196-01 21 37626086 37626086 G A DOPEY2 Missense_Mutation p.S1713N 0.43 tolerated(0.08) benign(0.033) TCGA-IZ-8196-01 21 40641908 40641908 T A BRWD1 Missense_Mutation p.I483F 0.53 deleterious(0) probably_damaging(0.979) TCGA-IZ-8196-01 21 44152003 44152003 A G PDE9A Missense_Mutation p.E129G 0.52 tolerated(0.35) benign(0.007) TCGA-IZ-8196-01 22 24734414 24734414 C T SPECC1L Missense_Mutation p.T874I 0.39 deleterious(0) probably_damaging(0.921) TCGA-IZ-8196-01 22 25023938 25023938 T C GGT1 Missense_Mutation p.I443T 0.49 deleterious(0) probably_damaging(0.98) TCGA-IZ-8196-01 22 51018475 51018475 A C CHKB Silent p.V285V 0.40 TCGA-IZ-8196-01 2 10051000 10051000 T C TAF1B Missense_Mutation p.V364A 0.38 deleterious(0.04) benign(0.038) TCGA-IZ-8196-01 2 11960558 11960558 G C LPIN1 Missense_Mutation p.V896L 0.37 deleterious(0) probably_damaging(0.996) TCGA-IZ-8196-01 2 11960560 11960560 A G LPIN1 Silent p.V896V 0.38 TCGA-IZ-8196-01 2 136620201 136620201 C A MCM6 Missense_Mutation p.S399I 0.43 deleterious(0) probably_damaging(0.982) TCGA-IZ-8196-01 2 136620202 136620202 T G MCM6 Missense_Mutation p.S399R 0.44 deleterious(0) probably_damaging(0.926) TCGA-IZ-8196-01 2 176995325 176995341 GCCCTCCGGGACTGGGT - HOXD8 Frame_Shift_Del p.P78Rfs*3 0.40 TCGA-IZ-8196-01 2 220090289 220090289 A C ATG9A Missense_Mutation p.F73C 0.38 deleterious(0) possibly_damaging(0.885) TCGA-IZ-8196-01 2 228860230 228860230 G C SPHKAP Silent p.S1543S 0.38 TCGA-IZ-8196-01 2 26178417 26178417 A C KIF3C Missense_Mutation p.L588R 0.42 benign(0.004) TCGA-IZ-8196-01 2 28004505 28004506 - T RBKS Frame_Shift_Ins p.D316Rfs*31 0.29 TCGA-IZ-8196-01 2 43953471 43953471 G T PLEKHH2 Missense_Mutation p.D868Y 0.36 deleterious(0) probably_damaging(0.992) TCGA-IZ-8196-01 2 84777109 84777109 A T DNAH6 Silent p.L471L 0.38 TCGA-IZ-8196-01 2 9002791 9002791 A - MBOAT2 Frame_Shift_Del p.W372Gfs*10 0.31 TCGA-IZ-8196-01 3 122247098 122247098 C T PARP9 3'UTR 0.47 TCGA-IZ-8196-01 3 149678575 149678575 C G RNF13 Missense_Mutation p.T277S 0.36 tolerated(0.06) probably_damaging(0.983) TCGA-IZ-8196-01 3 48956091 48956091 T A ARIH2OS Silent p.P164P 0.57 TCGA-IZ-8196-01 3 56789065 56789065 T A ARHGEF3 Missense_Mutation p.T139S 0.47 tolerated(0.06) probably_damaging(0.999) TCGA-IZ-8196-01 3 9802445 9802445 C T CAMK1 Missense_Mutation p.G214S 0.47 deleterious(0.05) probably_damaging(1) TCGA-IZ-8196-01 4 173269759 173269759 C T GALNTL6 Missense_Mutation p.R158W 0.51 deleterious(0) probably_damaging(1) TCGA-IZ-8196-01 4 46312218 46312218 A T GABRA2 Silent p.A177A 0.43 TCGA-IZ-8196-01 5 122359696 122359696 T A PPIC Silent p.T171T 0.40 TCGA-IZ-8196-01 5 140223201 140223201 G A PCDHA8 Silent p.P765P 0.78 TCGA-IZ-8196-01 5 140811805 140811805 G A PCDHGA12 Silent p.E493E 0.42 TCGA-IZ-8196-01 5 154183178 154183178 T A LARP1 Missense_Mutation p.V694D 0.47 deleterious(0) probably_damaging(0.988) TCGA-IZ-8196-01 5 167995656 167995656 G A PANK3 Missense_Mutation p.R126C 0.37 deleterious(0.01) probably_damaging(0.923) TCGA-IZ-8196-01 5 31526783 31526783 G T DROSHA Missense_Mutation p.P86H 0.46 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-IZ-8196-01 5 35876145 35876145 G T IL7R Missense_Mutation p.D313Y 0.41 deleterious(0) possibly_damaging(0.807) TCGA-IZ-8196-01 5 476140 476140 T A SLC9A3 Missense_Mutation p.E712V 0.35 deleterious(0.04) benign(0.009) TCGA-IZ-8196-01 5 5235155 5235155 G C ADAMTS16 Missense_Mutation p.G627R 0.42 deleterious(0) probably_damaging(1) TCGA-IZ-8196-01 5 76987260 76987260 C A TBCA Missense_Mutation p.V104L 0.32 deleterious(0.04) benign(0.004) TCGA-IZ-8196-01 6 100895187 100895187 A T SIM1 Missense_Mutation p.S319T 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-IZ-8196-01 6 111695488 111695488 T - REV3L Frame_Shift_Del p.N1357Ifs*12 0.29 TCGA-IZ-8196-01 6 30640454 30640454 G T DHX16 Silent p.L55L 0.40 TCGA-IZ-8196-01 6 30640464 30640464 G T DHX16 Missense_Mutation p.T52N 0.35 tolerated(0.33) probably_damaging(0.91) TCGA-IZ-8196-01 6 31545047 31545049 CCC - TNF In_Frame_Del p.P146del 0.42 TCGA-IZ-8196-01 6 32916524 32916524 C T HLA-DMA 3'UTR 0.44 TCGA-IZ-8196-01 6 33287821 33287822 - A DAXX Frame_Shift_Ins p.E478* 0.19 TCGA-IZ-8196-01 6 39869862 39869863 - T DAAM2 3'UTR 0.21 TCGA-IZ-8196-01 6 90426453 90426453 C T MDN1 Missense_Mutation p.G2220D 0.39 probably_damaging(0.998) TCGA-IZ-8196-01 7 116422117 116422117 T A MET Missense_Mutation p.F1218I 0.41 deleterious(0) probably_damaging(0.998) TCGA-IZ-8196-01 7 117431391 117431391 G CT CTTNBP2 Frame_Shift_Ins p.T620Kfs*53 0.28 TCGA-IZ-8196-01 7 17362177 17362177 A T AHR Missense_Mutation p.R102S 0.46 tolerated(0.24) benign(0.018) TCGA-IZ-8196-01 7 29519827 29519827 T C CHN2 Intron 0.56 TCGA-IZ-8196-01 7 31877507 31877507 C T PDE1C Silent p.K413K 0.42 TCGA-IZ-8196-01 7 42957131 42957131 G T PSMA2 3'UTR 0.37 TCGA-IZ-8196-01 7 82579067 82579067 C A PCLO Missense_Mutation p.A3613S 0.54 unknown(0) TCGA-IZ-8196-01 8 100514063 100514063 C T VPS13B Missense_Mutation p.P1340L 0.38 tolerated(0.1) benign(0.075) TCGA-IZ-8196-01 8 42565553 42565553 G A CHRNB3 Missense_Mutation p.M75I 0.56 deleterious(0) benign(0.297) TCGA-IZ-8196-01 8 94747484 94747484 A G RBM12B Silent p.H385H 0.41 TCGA-IZ-A6M8-01 10 113913352 113913352 G A GPAM Nonsense_Mutation p.R815* 0.32 TCGA-IZ-A6M8-01 10 11911626 11911626 G C PROSER2 Missense_Mutation p.A177P 0.35 tolerated(1) benign(0.03) TCGA-IZ-A6M8-01 10 135166098 135166098 C T PRAP1 3'UTR 0.39 TCGA-IZ-A6M8-01 10 28438917 28438917 G T MPP7 Silent p.A76A 0.36 TCGA-IZ-A6M8-01 11 18731076 18731076 C A IGSF22 Missense_Mutation p.K952N 0.33 tolerated(0.15) possibly_damaging(0.762) TCGA-IZ-A6M8-01 11 34219046 34219046 C T ABTB2 Missense_Mutation p.R357H 0.54 tolerated(0.25) benign(0.001) TCGA-IZ-A6M8-01 11 64851577 64851577 G A CDCA5 5'UTR 0.17 TCGA-IZ-A6M8-01 11 6652589 6652589 T - DCHS1 Frame_Shift_Del p.K1242Rfs*15 0.22 TCGA-IZ-A6M8-01 11 8639493 8639493 A G TRIM66 Nonstop_Mutation p.*1246Rext*33 0.23 TCGA-IZ-A6M8-01 12 123815855 123815855 C G SBNO1 Missense_Mutation p.G326A 0.35 deleterious(0) probably_damaging(1) TCGA-IZ-A6M8-01 12 13768093 13768093 T C GRIN2B Missense_Mutation p.M537V 0.26 deleterious(0.01) possibly_damaging(0.832) TCGA-IZ-A6M8-01 12 53721883 53721883 A G SP7 3'UTR 0.16 TCGA-IZ-A6M8-01 12 53825014 53825014 A T AMHR2 Missense_Mutation p.E493D 0.31 deleterious(0.03) possibly_damaging(0.523) TCGA-IZ-A6M8-01 12 53899840 53899840 T C TARBP2 Missense_Mutation p.C337R 0.26 deleterious(0) probably_damaging(0.997) TCGA-IZ-A6M8-01 12 57442117 57442117 G A MYO1A 5'UTR 0.33 TCGA-IZ-A6M8-01 12 58166555 58166555 C T METTL21B Silent p.F16F 0.41 TCGA-IZ-A6M8-01 12 62931886 62931886 G - MON2 Frame_Shift_Del p.W710* 0.17 TCGA-IZ-A6M8-01 13 103271166 103271166 G T TPP2 Missense_Mutation p.C197F 0.39 deleterious(0) probably_damaging(0.998) TCGA-IZ-A6M8-01 13 108882148 108882148 G T ABHD13 Missense_Mutation p.L194F 0.27 deleterious(0) probably_damaging(0.992) TCGA-IZ-A6M8-01 13 108882149 108882149 G T ABHD13 Missense_Mutation p.G195C 0.27 deleterious(0) probably_damaging(0.997) TCGA-IZ-A6M8-01 13 35731352 35731352 A G NBEA Missense_Mutation p.Y930C 0.23 deleterious(0) probably_damaging(0.954) TCGA-IZ-A6M8-01 14 20774052 20774052 T C TTC5 Silent p.K15K 0.14 TCGA-IZ-A6M8-01 14 35062293 35062293 C A SNX6 Missense_Mutation p.D238Y 0.23 deleterious(0) possibly_damaging(0.74) TCGA-IZ-A6M8-01 14 75019017 75019017 C G LTBP2 Silent p.G424G 0.33 TCGA-IZ-A6M8-01 14 77492877 77492877 A G IRF2BPL Missense_Mutation p.F420S 0.30 deleterious(0) unknown(0) TCGA-IZ-A6M8-01 15 30019082 30019082 T G TJP1 Silent p.T738T 0.23 TCGA-IZ-A6M8-01 15 43748739 43748739 C T TP53BP1 Missense_Mutation p.M689I 0.33 tolerated(0.23) benign(0.003) TCGA-IZ-A6M8-01 15 77750833 77750833 C G HMG20A Silent p.T28T 0.32 TCGA-IZ-A6M8-01 16 28509637 28509637 C G APOBR Missense_Mutation p.P1064R 0.11 deleterious(0) unknown(0) TCGA-IZ-A6M8-01 16 3304171 3304171 T - MEFV Frame_Shift_Del p.E299Dfs*69 0.22 TCGA-IZ-A6M8-01 16 70605581 70605581 G A SF3B3 Silent p.V1173V 0.26 TCGA-IZ-A6M8-01 17 17962263 17962263 T A GID4 Missense_Mutation p.Y230N 0.27 tolerated(0.27) benign(0.133) TCGA-IZ-A6M8-01 17 21318649 21318649 C A KCNJ12 5'UTR 0.22 TCGA-IZ-A6M8-01 17 27948314 27948314 G A CORO6 Silent p.V42V 0.40 TCGA-IZ-A6M8-01 17 38562843 38562844 - T TOP2A Nonsense_Mutation p.Y612* 0.28 TCGA-IZ-A6M8-01 17 39919348 39919348 G T JUP Missense_Mutation p.L462I 0.20 tolerated(0.07) probably_damaging(0.94) TCGA-IZ-A6M8-01 17 4389649 4389649 G A SPNS3 Intron 0.19 TCGA-IZ-A6M8-01 17 56676917 56676918 GA - TEX14 Frame_Shift_Del p.P603Lfs*38 0.36 TCGA-IZ-A6M8-01 17 73953542 73953542 C G ACOX1 Missense_Mutation p.G179A 0.48 tolerated(0.12) benign(0.207) TCGA-IZ-A6M8-01 17 80047603 80047603 C G FASN Splice_Site p.X624_splice 0.18 TCGA-IZ-A6M8-01 18 21214112 21214114 TCC CT ANKRD29 Splice_Site p.X111_splice 0.21 TCGA-IZ-A6M8-01 19 11019856 11019856 G A CARM1 Silent p.L177L 0.33 TCGA-IZ-A6M8-01 19 40366441 40366444 CGCA - FCGBP Frame_Shift_Del p.V4597Afs*73 0.11 TCGA-IZ-A6M8-01 19 44419046 44419046 A C ZNF45 Missense_Mutation p.I181S 0.32 tolerated(0.44) benign(0.001) TCGA-IZ-A6M8-01 19 49925698 49925700 TTA - PTH2 3'UTR 0.20 TCGA-IZ-A6M8-01 19 52941044 52941044 T A ZNF534 Missense_Mutation p.L124I 0.33 tolerated(0.18) possibly_damaging(0.794) TCGA-IZ-A6M8-01 19 9057871 9057871 G A MUC16 Missense_Mutation p.P9859S 0.30 unknown(0) TCGA-IZ-A6M8-01 1 10713663 10713663 G A CASZ1 Silent p.T817T 0.39 TCGA-IZ-A6M8-01 1 10714628 10714628 G A CASZ1 Silent p.Y562Y 0.32 TCGA-IZ-A6M8-01 1 117660955 117660955 T G TRIM45 Missense_Mutation p.N308T 0.34 tolerated(0.08) benign(0.005) TCGA-IZ-A6M8-01 1 150900339 150900347 AGATGGATT - SETDB1 In_Frame_Del p.K50_C53delinsS 0.27 TCGA-IZ-A6M8-01 1 16451538 16451538 C A EPHA2 3'UTR 0.48 TCGA-IZ-A6M8-01 1 179076969 179076969 G T ABL2 Missense_Mutation p.L1145I 0.31 tolerated_low_confidence(0.36) probably_damaging(0.99) TCGA-IZ-A6M8-01 1 200378264 200378264 C T ZNF281 Silent p.Q190Q 0.41 TCGA-IZ-A6M8-01 1 225600280 225600280 A C LBR Missense_Mutation p.H320Q 0.24 tolerated(0.29) benign(0.197) TCGA-IZ-A6M8-01 1 23380289 23380289 G A KDM1A Silent p.L249L 0.36 TCGA-IZ-A6M8-01 1 2418423 2418423 G A PLCH2 Silent p.G271G 0.23 TCGA-IZ-A6M8-01 1 43675436 43675439 TTGA - WDR65 Frame_Shift_Del p.F593Lfs*15 0.31 TCGA-IZ-A6M8-01 1 45812448 45812448 A T TESK2 Missense_Mutation p.F266I 0.40 deleterious(0) probably_damaging(0.999) TCGA-IZ-A6M8-01 1 46206860 46206860 G A IPP Missense_Mutation p.S146F 0.29 deleterious(0.01) benign(0.398) TCGA-IZ-A6M8-01 1 50667023 50667023 G T ELAVL4 3'UTR 0.33 TCGA-IZ-A6M8-01 1 79470814 79470814 C - ELTD1 Frame_Shift_Del p.G38Efs*28 0.17 TCGA-IZ-A6M8-01 1 85506767 85506767 C G MCOLN3 Missense_Mutation p.D108H 0.36 deleterious(0.01) possibly_damaging(0.77) TCGA-IZ-A6M8-01 20 20033152 20033152 G A CRNKL1 Silent p.A106A 0.30 TCGA-IZ-A6M8-01 20 21142953 21142953 A T RP4-777D9.2 Intron 0.32 TCGA-IZ-A6M8-01 20 30730877 30730877 C T TM9SF4 Silent p.F207F 0.23 TCGA-IZ-A6M8-01 20 36758599 36758599 G C TGM2 3'UTR 0.29 TCGA-IZ-A6M8-01 20 60427908 60427908 C A CDH4 Missense_Mutation p.F277L 0.32 deleterious(0.03) probably_damaging(1) TCGA-IZ-A6M8-01 21 30693553 30693553 T A BACH1 5'UTR 0.42 TCGA-IZ-A6M8-01 21 42837987 42837987 T G TMPRSS2 3'UTR 0.27 TCGA-IZ-A6M8-01 22 18909899 18909899 C A PRODH Missense_Mutation p.G290C 0.34 deleterious(0) probably_damaging(0.999) TCGA-IZ-A6M8-01 2 120362785 120362785 A C PCDP1 Missense_Mutation p.K351N 0.28 tolerated(0.06) benign(0.053) TCGA-IZ-A6M8-01 2 122494414 122494414 A G NIFK Missense_Mutation p.S5P 0.32 deleterious(0.05) benign(0.445) TCGA-IZ-A6M8-01 2 166908235 166908235 C A SCN1A Missense_Mutation p.D320Y 0.36 deleterious(0) probably_damaging(0.942) TCGA-IZ-A6M8-01 2 219920296 219920296 A G IHH Missense_Mutation p.F290S 0.29 tolerated(0.4) benign(0.373) TCGA-IZ-A6M8-01 2 239186362 239186362 C T PER2 Silent p.P72P 0.12 TCGA-IZ-A6M8-01 2 70096993 70096993 T G GMCL1 Missense_Mutation p.F454C 0.34 deleterious(0) benign(0.246) TCGA-IZ-A6M8-01 3 122471457 122471457 A G HSPBAP1 Missense_Mutation p.I269T 0.30 deleterious(0) probably_damaging(0.911) TCGA-IZ-A6M8-01 3 132207851 132207851 T C DNAJC13 Missense_Mutation p.F1152L 0.32 tolerated(0.06) benign(0.082) TCGA-IZ-A6M8-01 3 152881420 152881420 A C RAP2B 3'UTR 0.19 TCGA-IZ-A6M8-01 3 47452317 47452317 C G PTPN23 Missense_Mutation p.P1010R 0.25 unknown(0) TCGA-IZ-A6M8-01 3 49737921 49737921 A G RNF123 Missense_Mutation p.D376G 0.38 tolerated(0.36) benign(0.093) TCGA-IZ-A6M8-01 3 57136553 57136553 C T IL17RD Silent p.S311S 0.26 TCGA-IZ-A6M8-01 4 135121148 135121148 C A PABPC4L Nonsense_Mutation p.E401* 0.28 TCGA-IZ-A6M8-01 4 169315621 169315621 T A DDX60L Missense_Mutation p.I1269F 0.26 deleterious(0.01) possibly_damaging(0.853) TCGA-IZ-A6M8-01 4 1977074 1977074 G C WHSC1 Missense_Mutation p.V1190L 0.22 tolerated(0.15) benign(0.002) TCGA-IZ-A6M8-01 4 39205336 39205336 A C WDR19 Missense_Mutation p.E199D 0.31 tolerated(0.17) benign(0.011) TCGA-IZ-A6M8-01 4 56737307 56737307 A C EXOC1 Missense_Mutation p.Q291P 0.32 tolerated(0.28) possibly_damaging(0.53) TCGA-IZ-A6M8-01 5 118479556 118479556 T C DMXL1 Silent p.F799F 0.32 TCGA-IZ-A6M8-01 5 126705695 126705695 G T MEGF10 Splice_Site p.X138_splice 0.30 TCGA-IZ-A6M8-01 6 151161158 151161158 C T PLEKHG1 Missense_Mutation p.A1095V 0.33 tolerated(0.12) benign(0.194) TCGA-IZ-A6M8-01 6 163987714 163987714 T G QKI Intron 0.33 TCGA-IZ-A6M8-01 6 26091332 26091332 G C HFE Missense_Mutation p.E114Q 0.35 tolerated(0.21) benign(0.037) TCGA-IZ-A6M8-01 6 88362905 88362905 A T ORC3 Missense_Mutation p.N485I 0.31 deleterious(0.03) benign(0.162) TCGA-IZ-A6M8-01 7 106508582 106508582 C - PIK3CG Frame_Shift_Del p.K194Sfs*9 0.24 TCGA-IZ-A6M8-01 7 40134339 40134339 T C CDK13 Silent p.P1433P 0.25 TCGA-IZ-A6M8-01 7 4056809 4056809 C T SDK1 Silent p.R809R 0.53 TCGA-IZ-A6M8-01 7 45125173 45125173 A - NACAD Frame_Shift_Del p.E203Sfs*103 0.26 TCGA-IZ-A6M8-01 7 50771593 50771593 G T GRB10 Missense_Mutation p.Q22K 0.09 tolerated_low_confidence(0.42) benign(0.08) TCGA-IZ-A6M8-01 7 769345 769345 A C HEATR2 Missense_Mutation p.Q214P 0.24 deleterious(0.01) possibly_damaging(0.616) TCGA-IZ-A6M8-01 8 23294705 23294705 G A ENTPD4 Silent p.D372D 0.25 TCGA-IZ-A6M8-01 8 24263029 24263029 T G ADAMDEC1 3'UTR 0.40 TCGA-IZ-A6M8-01 8 37729061 37729061 G C RAB11FIP1 Missense_Mutation p.P1087A 0.42 tolerated_low_confidence(0.14) probably_damaging(0.996) TCGA-IZ-A6M8-01 8 49647695 49647695 G A EFCAB1 Silent p.L6L 0.37 TCGA-IZ-A6M8-01 8 93088202 93088202 A G RUNX1T1 Intron 0.28 TCGA-IZ-A6M8-01 8 97156738 97156738 A C GDF6 3'UTR 0.32 TCGA-IZ-A6M8-01 9 109688639 109688639 G A ZNF462 Missense_Mutation p.A816T 0.23 benign(0.007) TCGA-IZ-A6M8-01 9 129646319 129646319 G C ZBTB34 3'UTR 0.25 TCGA-IZ-A6M8-01 9 130982346 130982346 G A DNM1 Silent p.K223K 0.30 TCGA-IZ-A6M8-01 9 131151640 131151640 G T URM1 Missense_Mutation p.V97L 0.05 tolerated_low_confidence(0.07) benign(0.019) TCGA-IZ-A6M8-01 9 139748712 139748712 C T MAMDC4 Silent p.V240V 0.29 TCGA-IZ-A6M8-01 9 32632528 32632528 A G TAF1L Missense_Mutation p.L1017P 0.31 deleterious(0) probably_damaging(0.997) TCGA-IZ-A6M8-01 9 441958 441958 C T DOCK8 Silent p.V1813V 0.41 TCGA-IZ-A6M8-01 9 71628289 71628289 G A PRKACG Silent p.Y240Y 0.33 TCGA-IZ-A6M8-01 9 74838062 74838062 A G GDA Silent p.T211T 0.22 TCGA-IZ-A6M8-01 9 95575877 95575877 G C ANKRD19P Splice_Site 0.33 TCGA-IZ-A6M8-01 X 119389519 119389519 T G ZBTB33 3'UTR 0.08 TCGA-IZ-A6M8-01 X 77268391 77268391 T A ATP7A Missense_Mutation p.Y730N 0.60 deleterious(0) benign(0.236) TCGA-IZ-A6M9-01 10 105795252 105795252 T G COL17A1 Missense_Mutation p.E1163A 0.13 probably_damaging(0.967) TCGA-IZ-A6M9-01 10 134738376 134738376 G - TTC40 Frame_Shift_Del p.I361Yfs*4 0.37 TCGA-IZ-A6M9-01 10 43088707 43088707 T C ZNF33B Missense_Mutation p.H564R 0.50 tolerated(0.2) possibly_damaging(0.748) TCGA-IZ-A6M9-01 10 49986698 49986698 C T WDFY4 Missense_Mutation p.S1073F 0.29 deleterious(0) probably_damaging(0.999) TCGA-IZ-A6M9-01 10 5855180 5855180 C A GDI2 Silent p.L14L 0.48 TCGA-IZ-A6M9-01 11 111953315 111953315 C - C11orf57 Frame_Shift_Del p.H167Qfs*14 0.26 TCGA-IZ-A6M9-01 11 118952015 118952015 C - VPS11 Frame_Shift_Del p.Q884Sfs*13 0.30 TCGA-IZ-A6M9-01 11 33038057 33038057 C T DEPDC7 Intron 0.33 TCGA-IZ-A6M9-01 11 45936221 45936221 G A PEX16 Missense_Mutation p.P159S 0.37 tolerated(0.99) benign(0.004) TCGA-IZ-A6M9-01 11 6412728 6412728 G A SMPD1 Missense_Mutation p.V145M 0.39 deleterious(0) possibly_damaging(0.73) TCGA-IZ-A6M9-01 12 123465766 123465770 AGAGC - ARL6IP4 Frame_Shift_Del p.S151Efs*56 0.23 TCGA-IZ-A6M9-01 13 101287091 101287091 T G TMTC4 Missense_Mutation p.S492R 0.33 deleterious(0) probably_damaging(0.979) TCGA-IZ-A6M9-01 13 45563329 45563329 G - NUFIP1 Frame_Shift_Del p.F81Lfs*122 0.19 TCGA-IZ-A6M9-01 13 76395479 76395497 AAAGAAGATTCTACCACTT - LMO7 Frame_Shift_Del p.K559Lfs*8 0.30 TCGA-IZ-A6M9-01 14 55817793 55817793 T A FBXO34 Missense_Mutation p.C229S 0.40 tolerated(0.1) benign(0.09) TCGA-IZ-A6M9-01 14 74060593 74060593 G T ACOT4 Missense_Mutation p.M215I 0.05 deleterious(0) possibly_damaging(0.471) TCGA-IZ-A6M9-01 15 42143073 42143073 G A SPTBN5 Nonsense_Mutation p.R3634* 0.07 TCGA-IZ-A6M9-01 16 30616114 30616114 C T ZNF689 Missense_Mutation p.R325H 0.08 tolerated(0.32) probably_damaging(0.945) TCGA-IZ-A6M9-01 16 58592566 58592570 CAAGA - CNOT1 Frame_Shift_Del p.L714Wfs*6 0.47 TCGA-IZ-A6M9-01 16 70163023 70163023 A T PDPR Missense_Mutation p.N202I 0.27 tolerated(0.16) benign(0.007) TCGA-IZ-A6M9-01 16 75678300 75678300 A T KARS Silent p.L9L 0.57 TCGA-IZ-A6M9-01 16 90072661 90072661 G A DBNDD1 3'UTR 0.64 TCGA-IZ-A6M9-01 17 10358389 10358389 G T MYH4 Missense_Mutation p.F768L 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-IZ-A6M9-01 17 10608594 10608594 T G ADPRM Missense_Mutation p.S117R 0.55 deleterious(0.02) benign(0.078) TCGA-IZ-A6M9-01 17 16612498 16612498 A G CCDC144A Missense_Mutation p.Y376C 0.25 tolerated_low_confidence(0.25) possibly_damaging(0.759) TCGA-IZ-A6M9-01 17 27014486 27014486 G T SUPT6H Silent p.L1001L 0.21 TCGA-IZ-A6M9-01 17 37341119 37341119 T A CACNB1 Splice_Site p.X217_splice 0.60 TCGA-IZ-A6M9-01 17 37883597 37883597 C T ERBB2 Missense_Mutation p.A1070V 0.31 tolerated(0.32) benign(0.006) TCGA-IZ-A6M9-01 17 72588562 72588562 G T C17orf77 Missense_Mutation p.C126F 0.26 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-IZ-A6M9-01 17 72773450 72773451 - C TMEM104 5'UTR 0.41 TCGA-IZ-A6M9-01 18 72775888 72775888 C T ZNF407 Missense_Mutation p.R2071W 0.07 deleterious(0) benign(0.333) TCGA-IZ-A6M9-01 19 7684501 7684501 C T XAB2 Missense_Mutation p.A847T 0.05 deleterious(0.04) benign(0.003) TCGA-IZ-A6M9-01 19 8503277 8503277 C T MARCH2 Silent p.S196S 0.35 TCGA-IZ-A6M9-01 1 115277116 115277116 T A CSDE1 Missense_Mutation p.M223L 0.11 tolerated(0.13) benign(0.022) TCGA-IZ-A6M9-01 1 150443766 150443766 A C RPRD2 Missense_Mutation p.E781A 0.40 deleterious_low_confidence(0) benign(0.427) TCGA-IZ-A6M9-01 1 180885446 180885457 TCCCAGGGTATG - KIAA1614 In_Frame_Del p.P70_W73del 0.40 TCGA-IZ-A6M9-01 1 19282228 19282228 G A IFFO2 Missense_Mutation p.P200L 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-IZ-A6M9-01 1 202701002 202701002 A C KDM5B Nonsense_Mutation p.Y1325* 0.31 TCGA-IZ-A6M9-01 1 208234136 208234136 A T PLXNA2 Missense_Mutation p.I878N 0.41 deleterious(0) probably_damaging(0.916) TCGA-IZ-A6M9-01 1 208234142 208234142 A G PLXNA2 Missense_Mutation p.V876A 0.43 deleterious(0) probably_damaging(0.973) TCGA-IZ-A6M9-01 1 214557537 214557537 C T PTPN14 Missense_Mutation p.S554N 0.38 tolerated(0.31) benign(0) TCGA-IZ-A6M9-01 1 9809529 9809529 G A CLSTN1 Silent p.H325H 0.43 TCGA-IZ-A6M9-01 20 2635760 2635760 G A NOP56 Intron 0.41 TCGA-IZ-A6M9-01 20 34765954 34765956 CTT - EPB41L1 In_Frame_Del p.F142del 0.42 TCGA-IZ-A6M9-01 20 44592465 44592465 C T ZNF335 Missense_Mutation p.A423T 0.06 tolerated(0.15) benign(0.002) TCGA-IZ-A6M9-01 22 31345772 31345772 T G MORC2 Missense_Mutation p.T33P 0.38 tolerated(0.08) probably_damaging(0.982) TCGA-IZ-A6M9-01 22 41258244 41258244 C T XPNPEP3 Intron 0.55 TCGA-IZ-A6M9-01 22 42972566 42972566 C T SERHL2 3'Flank 0.38 TCGA-IZ-A6M9-01 2 102018936 102018937 TC A RFX8 Frame_Shift_Del p.R402Sfs*41 0.41 TCGA-IZ-A6M9-01 2 131976330 131976330 G A POTEE Missense_Mutation p.A119T 0.36 tolerated_low_confidence(0.13) possibly_damaging(0.499) TCGA-IZ-A6M9-01 2 133403162 133403162 C A GPR39 Missense_Mutation p.Q449K 0.47 tolerated_low_confidence(1) benign(0.004) TCGA-IZ-A6M9-01 2 152382499 152382499 G A NEB Silent p.V7378V 0.23 TCGA-IZ-A6M9-01 2 169985101 169985101 T - LRP2 3'UTR 0.33 TCGA-IZ-A6M9-01 2 189867767 189867767 C T COL3A1 Silent p.P844P 0.33 TCGA-IZ-A6M9-01 2 204045155 204045155 C T NBEAL1 Missense_Mutation p.A2143V 0.45 deleterious(0.02) possibly_damaging(0.617) TCGA-IZ-A6M9-01 2 27500675 27500675 T A DNAJC5G Missense_Mutation p.L56Q 0.26 deleterious(0) probably_damaging(1) TCGA-IZ-A6M9-01 3 121345735 121345735 C T FBXO40 Missense_Mutation p.P703L 0.85 tolerated_low_confidence(0.11) benign(0.009) TCGA-IZ-A6M9-01 3 159606614 159606614 A T IQCJ-SCHIP1 Silent p.P476P 0.78 TCGA-IZ-A6M9-01 3 32544279 32544279 G A CMTM6 5'UTR 0.07 TCGA-IZ-A6M9-01 3 52731772 52731772 G T GLT8D1 Nonsense_Mutation p.Y98* 0.81 TCGA-IZ-A6M9-01 4 1018104 1018104 A C FGFRL1 Missense_Mutation p.T242P 0.62 deleterious(0.03) probably_damaging(0.947) TCGA-IZ-A6M9-01 4 2632748 2632748 T A FAM193A Missense_Mutation p.L6H 0.35 deleterious(0) probably_damaging(0.997) TCGA-IZ-A6M9-01 4 54343069 54343069 T C LNX1 Silent p.T581T 0.41 TCGA-IZ-A6M9-01 4 56876035 56876035 A G CEP135 Missense_Mutation p.Q824R 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-IZ-A6M9-01 4 56885619 56885619 C T CEP135 Missense_Mutation p.A1038V 0.37 tolerated(0.47) benign(0.017) TCGA-IZ-A6M9-01 5 139781730 139781730 G A ANKHD1 Missense_Mutation p.G60S 0.06 unknown(0) TCGA-IZ-A6M9-01 5 1589360 1589360 A T SDHAP3 RNA 0.36 TCGA-IZ-A6M9-01 5 194906 194906 C T LRRC14B Missense_Mutation p.A328V 0.07 tolerated(0.52) benign(0.002) TCGA-IZ-A6M9-01 5 41071040 41071040 G C MROH2B 5'UTR 0.51 TCGA-IZ-A6M9-01 6 153293427 153293427 G A FBXO5 Nonsense_Mutation p.R358* 0.37 TCGA-IZ-A6M9-01 6 159188095 159188095 G C EZR Missense_Mutation p.L538V 0.33 deleterious(0) probably_damaging(1) TCGA-IZ-A6M9-01 6 38825504 38825504 A G DNAH8 Missense_Mutation p.I1765V 0.49 possibly_damaging(0.668) TCGA-IZ-A6M9-01 7 135307641 135307641 C T NUP205 Nonsense_Mutation p.R1483* 0.04 TCGA-IZ-A6M9-01 7 144060864 144060864 G C ARHGEF5 Missense_Mutation p.G368R 0.25 tolerated(0.48) benign(0.026) TCGA-IZ-A6M9-01 7 21788203 21788203 G A DNAH11 Missense_Mutation p.R2846H 0.05 benign(0.347) TCGA-IZ-A6M9-01 7 36396484 36396484 A T KIAA0895 Intron 0.27 TCGA-IZ-A6M9-01 7 64389208 64389216 TTACTAAAC AT ZNF273 Frame_Shift_Del p.L501Hfs*83 0.16 TCGA-IZ-A6M9-01 7 70255844 70255844 A G AUTS2 Silent p.T1214T 0.28 TCGA-IZ-A6M9-01 7 74211898 74211898 G C GTF2IRD2 Missense_Mutation p.I651M 0.24 tolerated(0.18) benign(0.013) TCGA-IZ-A6M9-01 8 105393497 105393499 CTT - DPYS In_Frame_Del p.E496del 0.51 TCGA-IZ-A6M9-01 8 114326898 114326898 A C CSMD3 Missense_Mutation p.N101K 0.40 tolerated(0.12) benign(0.334) TCGA-IZ-A6M9-01 8 66617127 66617127 A C MTFR1 Missense_Mutation p.K160N 0.40 deleterious(0.01) possibly_damaging(0.836) TCGA-IZ-A6M9-01 8 70488224 70488224 C G SULF1 Missense_Mutation p.N64K 0.37 tolerated(0.14) benign(0.046) TCGA-IZ-A6M9-01 9 100286582 100286582 G A TMOD1 Missense_Mutation p.D38N 0.38 deleterious(0) probably_damaging(0.999) TCGA-IZ-A6M9-01 9 131469297 131469297 G A PKN3 Missense_Mutation p.A216T 0.06 tolerated(0.08) possibly_damaging(0.79) TCGA-IZ-A6M9-01 9 133556745 133556745 C T PRDM12 Missense_Mutation p.H265Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-IZ-A6M9-01 9 34637563 34637563 C G SIGMAR1 Missense_Mutation p.Q44H 0.19 tolerated(0.09) possibly_damaging(0.663) TCGA-IZ-A6M9-01 9 4656044 4656044 C T SPATA6L Intron 0.49 TCGA-IZ-A6M9-01 X 102841929 102841929 A T TCEAL4 Missense_Mutation p.E109V 0.86 deleterious(0.03) benign(0.243) TCGA-IZ-A6M9-01 X 117786022 117786022 T C DOCK11 Silent p.N1559N 0.74 TCGA-IZ-A6M9-01 X 118603720 118603720 T G SLC25A5 Missense_Mutation p.F70V 0.74 deleterious(0) probably_damaging(0.912) TCGA-IZ-A6M9-01 X 54841947 54841947 C T MAGED2 Silent p.A551A 0.09 TCGA-J7-6720-01 10 79629019 79629019 G A AL391421.1 3'UTR 0.35 TCGA-J7-6720-01 10 91178459 91178462 TGTT - IFIT5 3'UTR 0.10 TCGA-J7-6720-01 12 32777967 32777968 - TTTTTT FGD4 In_Frame_Ins p.I534_A535insFF 0.17 TCGA-J7-6720-01 12 6761549 6761549 C - ING4 Frame_Shift_Del p.G179Afs*31 0.23 TCGA-J7-6720-01 13 42742631 42742631 G A DGKH Missense_Mutation p.G392R 0.27 deleterious(0.01) probably_damaging(1) TCGA-J7-6720-01 13 42742632 42742632 G T DGKH Missense_Mutation p.G392V 0.27 deleterious(0) probably_damaging(1) TCGA-J7-6720-01 14 23549776 23549776 T C ACIN1 Silent p.V314V 0.30 TCGA-J7-6720-01 14 24793367 24793367 C A ADCY4 Silent p.L649L 0.07 TCGA-J7-6720-01 14 59965574 59965574 T C JKAMP Silent p.L196L 0.37 TCGA-J7-6720-01 15 81221510 81221511 AG - KIAA1199 Frame_Shift_Del p.I869Mfs*7 0.32 TCGA-J7-6720-01 16 28330355 28330355 C T SBK1 Missense_Mutation p.T89I 0.33 deleterious(0) probably_damaging(0.955) TCGA-J7-6720-01 17 5015173 5015173 C T ZNF232 5'UTR 0.06 TCGA-J7-6720-01 19 43585217 43585217 A T PSG2 Nonsense_Mutation p.Y82* 0.30 TCGA-J7-6720-01 19 53643573 53643575 TGA - ZNF347 In_Frame_Del p.S837del 0.31 TCGA-J7-6720-01 1 145578967 145578967 C T PIAS3 Missense_Mutation p.A182V 0.36 tolerated(0.31) benign(0.224) TCGA-J7-6720-01 1 156309583 156309583 G C TSACC Splice_Site p.X12_splice 0.31 TCGA-J7-6720-01 1 225598057 225598057 G C LBR Missense_Mutation p.S417C 0.35 deleterious(0) probably_damaging(1) TCGA-J7-6720-01 1 27189915 27189915 A G SFN Missense_Mutation p.E71G 0.38 tolerated_low_confidence(0.11) benign(0.069) TCGA-J7-6720-01 1 27720330 27720350 GCCTGGCTCTCAGCTGGCTCA - GPR3 In_Frame_Del p.A10_S16del 0.26 TCGA-J7-6720-01 20 2384361 2384361 C T TGM6 Missense_Mutation p.R410W 0.05 deleterious(0.01) benign(0.006) TCGA-J7-6720-01 20 2633483 2633483 T A NOP56 Intron 0.26 TCGA-J7-6720-01 21 47542788 47542788 G A COL6A2 Splice_Site p.X537_splice 0.33 TCGA-J7-6720-01 21 47809247 47809247 A T PCNT Missense_Mutation p.E1247D 0.37 possibly_damaging(0.636) TCGA-J7-6720-01 22 43579135 43579149 CACTTCCCCAGCGTC - TTLL12 In_Frame_Del p.D62_V66del 0.16 TCGA-J7-6720-01 2 188245425 188245425 A G CALCRL Missense_Mutation p.F92L 0.53 deleterious(0) benign(0.152) TCGA-J7-6720-01 2 203762106 203762106 C T WDR12 Missense_Mutation p.R124Q 0.24 tolerated(0.29) benign(0.071) TCGA-J7-6720-01 2 228145271 228145271 G T COL4A3 Missense_Mutation p.G780V 0.33 unknown(0) TCGA-J7-6720-01 2 230875429 230875429 A G FBXO36 Silent p.K132K 0.27 TCGA-J7-6720-01 3 172025192 172025192 C G FNDC3B Silent p.S367S 0.30 TCGA-J7-6720-01 3 52020519 52020519 G - ACY1 Frame_Shift_Del 0.38 TCGA-J7-6720-01 3 52269098 52269098 A G TWF2 Missense_Mutation p.F17S 0.32 deleterious(0) probably_damaging(0.994) TCGA-J7-6720-01 4 170028338 170028338 A G SH3RF1 Silent p.L720L 0.30 TCGA-J7-6720-01 4 247501 247501 A C ZNF876P RNA 0.24 TCGA-J7-6720-01 4 7026865 7026865 C A TBC1D14 Missense_Mutation p.T631N 0.27 deleterious(0.01) probably_damaging(0.962) TCGA-J7-6720-01 4 95496927 95496927 C G PDLIM5 Intron 0.28 TCGA-J7-6720-01 5 102444326 102444335 AGTGTAGTTG - GIN1 Frame_Shift_Del p.S26Cfs*8 0.26 TCGA-J7-6720-01 5 130500845 130500845 G T HINT1 Silent p.I18I 0.40 TCGA-J7-6720-01 5 179326225 179326225 C T TBC1D9B Silent p.E104E 0.31 TCGA-J7-6720-01 6 158093775 158093785 TTCAGAGCACC - ZDHHC14 Frame_Shift_Del p.I363Kfs*66 0.18 TCGA-J7-6720-01 6 169642014 169642014 C G THBS2 Missense_Mutation p.R245P 0.38 tolerated_low_confidence(0.28) benign(0.079) TCGA-J7-6720-01 6 20846322 20846322 A G CDKAL1 Missense_Mutation p.T219A 0.35 deleterious(0) benign(0.314) TCGA-J7-6720-01 6 43472653 43472653 A G TJAP1 Missense_Mutation p.N245S 0.10 tolerated(0.1) probably_damaging(0.997) TCGA-J7-6720-01 7 103292216 103292216 G C RELN Missense_Mutation p.T595S 0.49 deleterious(0.03) probably_damaging(0.986) TCGA-J7-6720-01 7 63726979 63726979 C G ZNF679 Missense_Mutation p.P323R 0.34 deleterious(0) probably_damaging(1) TCGA-J7-6720-01 7 99621053 99621053 A - ZKSCAN1 5'UTR 0.31 TCGA-J7-6720-01 8 139180285 139180285 T C FAM135B Missense_Mutation p.T371A 0.04 deleterious(0.02) benign(0.027) TCGA-J7-6720-01 8 143956729 143956729 C G CYP11B1 Splice_Site p.X374_splice 0.41 TCGA-J7-6720-01 8 75227665 75227665 G A JPH1 Silent p.R190R 0.33 TCGA-J7-8537-01 10 129910454 129910454 T G MKI67 Missense_Mutation p.I638L 0.22 deleterious(0.05) probably_damaging(0.987) TCGA-J7-8537-01 10 17495608 17495608 C T ST8SIA6 Silent p.A50A 0.38 TCGA-J7-8537-01 11 18541141 18541142 TG - TSG101 Nonsense_Mutation p.Y17* 0.23 TCGA-J7-8537-01 11 18793533 18793533 G A PTPN5 5'UTR 0.28 TCGA-J7-8537-01 11 8939004 8939004 G C AKIP1 Intron 0.14 TCGA-J7-8537-01 12 121766167 121766167 T C ANAPC5 Missense_Mutation p.D419G 0.14 tolerated(0.25) possibly_damaging(0.601) TCGA-J7-8537-01 12 121766168 121766168 C A ANAPC5 Missense_Mutation p.D419Y 0.15 deleterious(0.05) probably_damaging(0.968) TCGA-J7-8537-01 12 53861219 53861219 A G PCBP2 Intron 0.10 TCGA-J7-8537-01 13 113741757 113741757 A G MCF2L Missense_Mutation p.K861R 0.22 deleterious(0) probably_damaging(0.986) TCGA-J7-8537-01 14 107179222 107179222 G A IGHV2-70 Missense_Mutation p.P14L 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-J7-8537-01 14 54894418 54894418 A C CNIH1 3'UTR 0.20 TCGA-J7-8537-01 14 65009419 65009419 C A HSPA2 Missense_Mutation p.P618T 0.28 tolerated_low_confidence(0.58) benign(0) TCGA-J7-8537-01 15 40324962 40324962 A G EIF2AK4 Missense_Mutation p.D1578G 0.21 tolerated(0.25) probably_damaging(0.992) TCGA-J7-8537-01 15 98514552 98514552 A C ARRDC4 3'UTR 0.31 TCGA-J7-8537-01 16 19051691 19051691 C A TMC7 Silent p.I420I 0.19 TCGA-J7-8537-01 16 47117430 47117430 C T NETO2 Missense_Mutation p.R427H 0.20 deleterious(0.04) benign(0.052) TCGA-J7-8537-01 17 38187790 38187790 C G MED24 Splice_Site p.X356_splice 0.15 TCGA-J7-8537-01 17 45669357 45669357 A T NPEPPS Silent p.I432I 0.14 TCGA-J7-8537-01 17 62532827 62532827 G C CEP95 Missense_Mutation p.Q726H 0.31 deleterious(0) probably_damaging(0.991) TCGA-J7-8537-01 17 7478578 7478578 T G EIF4A1 Splice_Site p.X115_splice 0.21 TCGA-J7-8537-01 17 79826735 79826735 C G ARHGDIA 3'UTR 0.15 TCGA-J7-8537-01 19 44831564 44831564 T G ZNF112 3'UTR 0.24 TCGA-J7-8537-01 19 58005060 58005060 T G ZNF419 Missense_Mutation p.F380V 0.19 tolerated(0.6) possibly_damaging(0.777) TCGA-J7-8537-01 1 152277075 152277075 C A FLG Missense_Mutation p.E3429D 0.18 unknown(0) TCGA-J7-8537-01 1 180047678 180047678 A T CEP350 Missense_Mutation p.S1950C 0.18 benign(0.325) TCGA-J7-8537-01 1 19176018 19176018 G T TAS1R2 Missense_Mutation p.N428K 0.23 deleterious(0) probably_damaging(0.955) TCGA-J7-8537-01 1 19201049 19201049 A G ALDH4A1 Missense_Mutation p.V496A 0.22 tolerated(0.7) benign(0.001) TCGA-J7-8537-01 1 237617770 237617770 G T RYR2 Missense_Mutation p.D458Y 0.21 possibly_damaging(0.815) TCGA-J7-8537-01 1 27106580 27106580 T C ARID1A Missense_Mutation p.L2064P 0.24 possibly_damaging(0.838) TCGA-J7-8537-01 1 3334451 3334451 C T PRDM16 Silent p.D917D 0.25 TCGA-J7-8537-01 1 42047804 42047804 G A HIVEP3 Missense_Mutation p.R889C 0.23 probably_damaging(0.998) TCGA-J7-8537-01 1 94009756 94009756 G A FNBP1L Silent p.Q419Q 0.29 TCGA-J7-8537-01 20 13775537 13775537 A T NDUFAF5 Missense_Mutation p.E143D 0.15 deleterious(0) probably_damaging(0.994) TCGA-J7-8537-01 21 34904710 34904710 C T GART Missense_Mutation p.G157R 0.20 deleterious(0) probably_damaging(0.935) TCGA-J7-8537-01 22 24837246 24837246 C T ADORA2A Missense_Mutation p.P343L 0.25 tolerated_low_confidence(0.8) benign(0) TCGA-J7-8537-01 22 24898432 24898432 G C UPB1 Intron 0.05 TCGA-J7-8537-01 2 141607702 141607702 G A LRP1B Silent p.N1636N 0.18 TCGA-J7-8537-01 2 17962008 17962008 G A GEN1 Missense_Mutation p.G510E 0.14 tolerated(1) benign(0) TCGA-J7-8537-01 2 21238283 21238283 G A APOB Missense_Mutation p.A1156V 0.17 probably_damaging(0.994) TCGA-J7-8537-01 3 151161388 151161388 T A IGSF10 Missense_Mutation p.N1783Y 0.25 deleterious(0) probably_damaging(1) TCGA-J7-8537-01 3 167742778 167742778 T C GOLIM4 Missense_Mutation p.N577D 0.18 tolerated(0.05) possibly_damaging(0.72) TCGA-J7-8537-01 3 40433459 40433459 C A ENTPD3 Intron 0.24 TCGA-J7-8537-01 4 104117119 104117119 A C CENPE Silent p.V105V 0.18 TCGA-J7-8537-01 5 140712677 140712677 A G PCDHGA1 Intron 0.20 TCGA-J7-8537-01 5 149433707 149433707 A T CSF1R Missense_Mutation p.S948R 0.21 tolerated(0.12) possibly_damaging(0.83) TCGA-J7-8537-01 5 55247844 55247844 C G IL6ST Missense_Mutation p.E538Q 0.11 tolerated(0.45) benign(0.008) TCGA-J7-8537-01 6 27420221 27420223 TGG - ZNF184 In_Frame_Del p.T372del 0.18 TCGA-J7-8537-01 6 31762754 31762754 G T VARS Missense_Mutation p.P81T 0.18 deleterious_low_confidence(0.02) benign(0.096) TCGA-J7-8537-01 6 44272835 44272835 T A AARS2 Missense_Mutation p.D512V 0.08 deleterious(0) probably_damaging(0.991) TCGA-J7-8537-01 7 100610338 100610338 C A MUC3A 3'UTR 0.24 TCGA-J7-8537-01 7 105099624 105099624 A G PUS7 Missense_Mutation p.F614L 0.18 tolerated(0.48) benign(0.002) TCGA-J7-8537-01 7 150773354 150773354 C T SLC4A2 Intron 0.24 TCGA-J7-8537-01 8 12879058 12879058 T C KIAA1456 Silent p.S290S 0.23 TCGA-J7-8537-01 9 21333002 21333002 G C KLHL9 3'UTR 0.24 TCGA-J7-8537-01 9 35074067 35074067 C T FANCG 3'UTR 0.28 TCGA-J7-8537-01 X 144904238 144904238 C T SLITRK2 Nonsense_Mutation p.Q99* 0.20 TCGA-J7-8537-01 X 16168549 16168550 - C GRPR Frame_Shift_Ins p.D180* 0.16 TCGA-J7-8537-01 X 46713306 46713306 C G RP2 Missense_Mutation p.I166M 0.15 deleterious(0.02) possibly_damaging(0.765) TCGA-J7-A8I2-01 11 102033201 102033201 C T YAP1 Missense_Mutation p.T196I 0.41 tolerated(0.41) benign(0.199) TCGA-J7-A8I2-01 11 11971443 11971443 A G USP47 Missense_Mutation p.K1051R 0.33 deleterious(0.03) benign(0.024) TCGA-J7-A8I2-01 11 22851301 22851301 G T SVIP 5'UTR 0.34 TCGA-J7-A8I2-01 11 3380324 3380324 T C ZNF195 3'UTR 0.36 TCGA-J7-A8I2-01 11 62911071 62911071 C T SLC22A24 Missense_Mutation p.D61N 0.44 tolerated(0.53) benign(0.002) TCGA-J7-A8I2-01 11 66026154 66026155 CT - KLC2 Frame_Shift_Del p.L31Afs*15 0.34 TCGA-J7-A8I2-01 11 66190272 66190272 C T NPAS4 Silent p.P186P 0.52 TCGA-J7-A8I2-01 11 6647219 6647219 G A DCHS1 Silent p.H2221H 0.43 TCGA-J7-A8I2-01 12 111885593 111885593 G A SH2B3 Missense_Mutation p.R457Q 0.53 tolerated(0.09) possibly_damaging(0.89) TCGA-J7-A8I2-01 12 112607423 112607423 G C HECTD4 Missense_Mutation p.A3885G 0.48 probably_damaging(0.917) TCGA-J7-A8I2-01 12 65153124 65153124 G A GNS 5'UTR 0.35 TCGA-J7-A8I2-01 13 48985593 48985593 C T LPAR6 Missense_Mutation p.E323K 0.35 tolerated(0.14) benign(0.008) TCGA-J7-A8I2-01 13 96264392 96264392 C G DZIP1 Missense_Mutation p.D405H 0.37 deleterious(0) possibly_damaging(0.64) TCGA-J7-A8I2-01 14 61115779 61115780 - A SIX1 Frame_Shift_Ins p.H44Afs*22 0.26 TCGA-J7-A8I2-01 14 62213681 62213681 A G HIF1A Missense_Mutation p.M811V 0.48 tolerated(0.11) benign(0.08) TCGA-J7-A8I2-01 15 50866612 50866612 T C TRPM7 Missense_Mutation p.M1723V 0.39 deleterious(0.01) possibly_damaging(0.788) TCGA-J7-A8I2-01 15 50904864 50904864 C A TRPM7 Missense_Mutation p.G645C 0.46 deleterious(0) probably_damaging(0.995) TCGA-J7-A8I2-01 15 51014331 51014331 C T SPPL2A Silent p.S439S 0.39 TCGA-J7-A8I2-01 15 56207684 56207684 T C NEDD4 Missense_Mutation p.N449S 0.46 tolerated_low_confidence(0.91) benign(0.001) TCGA-J7-A8I2-01 15 63956789 63956789 C T HERC1 Missense_Mutation p.D2854N 0.40 benign(0.285) TCGA-J7-A8I2-01 15 63958332 63958332 C T HERC1 Missense_Mutation p.D2781N 0.43 probably_damaging(0.995) TCGA-J7-A8I2-01 15 80263200 80263200 T G BCL2A1 Silent p.R88R 0.06 TCGA-J7-A8I2-01 16 15130197 15130197 A C PDXDC1 3'UTR 0.44 TCGA-J7-A8I2-01 16 48180293 48180293 G A ABCC12 Nonsense_Mutation p.R15* 0.42 TCGA-J7-A8I2-01 17 18137219 18137219 C G LLGL1 Missense_Mutation p.Q174E 0.84 tolerated(0.33) benign(0.004) TCGA-J7-A8I2-01 17 27591409 27591409 G A NUFIP2 3'UTR 0.15 TCGA-J7-A8I2-01 17 27591411 27591411 A G NUFIP2 3'UTR 0.14 TCGA-J7-A8I2-01 17 39968008 39968008 C G LEPREL4 Missense_Mutation p.E54Q 0.50 tolerated(0.06) possibly_damaging(0.814) TCGA-J7-A8I2-01 17 46622084 46622084 G A HOXB2 Nonsense_Mutation p.Q64* 0.67 TCGA-J7-A8I2-01 17 5336185 5336185 A T RPAIN 3'Flank 0.74 TCGA-J7-A8I2-01 17 73754527 73754527 C T GALK1 Intron 0.29 TCGA-J7-A8I2-01 17 74393911 74393911 G C UBE2O Missense_Mutation p.A695G 0.32 tolerated(0.18) probably_damaging(0.985) TCGA-J7-A8I2-01 18 42531807 42531807 G A SETBP1 Silent p.L834L 0.43 TCGA-J7-A8I2-01 19 33119054 33119054 G A ANKRD27 Missense_Mutation p.S452L 0.46 deleterious(0) possibly_damaging(0.637) TCGA-J7-A8I2-01 19 35804386 35804386 C - MAG 3'UTR 0.27 TCGA-J7-A8I2-01 1 118008953 118008953 C G MAN1A2 Intron 0.37 TCGA-J7-A8I2-01 1 165664486 165664486 T A ALDH9A1 Intron 0.50 TCGA-J7-A8I2-01 1 50885395 50885395 G C DMRTA2 Missense_Mutation p.Q191E 0.05 tolerated(0.14) benign(0.217) TCGA-J7-A8I2-01 1 56989998 56989998 T A PPAP2B Missense_Mutation p.I176F 0.49 deleterious(0.01) possibly_damaging(0.905) TCGA-J7-A8I2-01 1 89357225 89357225 C T GTF2B 5'UTR 0.41 TCGA-J7-A8I2-01 20 1352846 1352846 T G FKBP1A Silent p.P79P 0.60 TCGA-J7-A8I2-01 20 34099427 34099427 C T CEP250 Missense_Mutation p.P2434L 0.61 benign(0.019) TCGA-J7-A8I2-01 20 50721862 50721862 C T ZFP64 5'UTR 0.87 TCGA-J7-A8I2-01 20 60906117 60906117 G A LAMA5 Silent p.I1207I 0.68 TCGA-J7-A8I2-01 21 35474094 35474094 C G SLC5A3 3'UTR 0.48 TCGA-J7-A8I2-01 21 43979172 43979172 C G SLC37A1 Missense_Mutation p.I318M 0.47 deleterious(0) probably_damaging(1) TCGA-J7-A8I2-01 22 30639798 30639798 C T LIF Missense_Mutation p.V151M 0.30 tolerated(0.09) possibly_damaging(0.86) TCGA-J7-A8I2-01 22 39715631 39715631 C T RPL3 5'UTR 0.41 TCGA-J7-A8I2-01 22 39715635 39715635 C T RPL3 5'UTR 0.41 TCGA-J7-A8I2-01 22 40708506 40708506 C T TNRC6B Intron 0.38 TCGA-J7-A8I2-01 22 41553142 41553172 GAGTAATGTTTGATGTCACTTGTCTTTCTAG - EP300 Splice_Site p.X1088_splice 0.28 TCGA-J7-A8I2-01 2 11053663 11053663 G A KCNF1 Missense_Mutation p.V371I 0.53 deleterious(0) probably_damaging(0.998) TCGA-J7-A8I2-01 2 122216460 122216460 T C CLASP1 Missense_Mutation p.I424V 0.49 tolerated(1) benign(0.003) TCGA-J7-A8I2-01 2 122513374 122513374 T A TSN Missense_Mutation p.F7I 0.47 deleterious(0) probably_damaging(0.945) TCGA-J7-A8I2-01 2 1481209 1481209 C T TPO Silent p.L391L 0.43 TCGA-J7-A8I2-01 2 178096314 178096314 G C NFE2L2 Missense_Mutation p.F339L 0.44 tolerated(0.62) benign(0.003) TCGA-J7-A8I2-01 2 178097338 178097338 G A NFE2L2 Intron 0.43 TCGA-J7-A8I2-01 2 179358605 179358605 G T PLEKHA3 Silent p.L113L 0.44 TCGA-J7-A8I2-01 2 27435095 27435095 C T ATRAID Silent p.H8H 0.48 TCGA-J7-A8I2-01 2 29456516 29456516 A G ALK Missense_Mutation p.I801T 0.50 tolerated(0.07) probably_damaging(0.966) TCGA-J7-A8I2-01 2 55870498 55870498 T C PNPT1 Missense_Mutation p.M657V 0.39 deleterious(0.01) benign(0.158) TCGA-J7-A8I2-01 2 73680351 73680351 A G ALMS1 Missense_Mutation p.I2232V 0.45 possibly_damaging(0.897) TCGA-J7-A8I2-01 3 113383247 113383247 T C KIAA2018 Missense_Mutation p.M57V 0.39 probably_damaging(0.989) TCGA-J7-A8I2-01 3 126137471 126137471 G C CCDC37 Missense_Mutation p.K168N 0.06 deleterious(0) probably_damaging(1) TCGA-J7-A8I2-01 3 20215950 20215950 C G SGOL1 Missense_Mutation p.R358T 0.41 tolerated(0.39) benign(0.016) TCGA-J7-A8I2-01 3 5257627 5257627 T C EDEM1 3'UTR 0.49 TCGA-J7-A8I2-01 4 138451594 138451594 C G PCDH18 Missense_Mutation p.G550A 0.32 tolerated(0.7) benign(0.252) TCGA-J7-A8I2-01 4 153273874 153273874 G A FBXW7 Intron 0.53 TCGA-J7-A8I2-01 4 1806099 1806099 A G FGFR3 Missense_Mutation p.Y375C 0.44 deleterious(0) possibly_damaging(0.882) TCGA-J7-A8I2-01 4 8082456 8082456 G A ABLIM2 Silent p.G176G 0.45 TCGA-J7-A8I2-01 5 71403432 71403432 C T MAP1B Missense_Mutation p.S25L 0.45 unknown(0) TCGA-J7-A8I2-01 6 136878718 136878718 G C MAP3K5 3'UTR 0.33 TCGA-J7-A8I2-01 6 144144858 144144858 G A PHACTR2 3'UTR 0.47 TCGA-J7-A8I2-01 6 44103069 44103069 C T TMEM63B Missense_Mutation p.R82W 0.52 deleterious(0.02) possibly_damaging(0.711) TCGA-J7-A8I2-01 7 12689143 12689143 G T SCIN Missense_Mutation p.V645F 0.44 deleterious(0) probably_damaging(0.992) TCGA-J7-A8I2-01 7 39736427 39736427 C T RALA Missense_Mutation p.T156I 0.43 deleterious(0) probably_damaging(1) TCGA-J7-A8I2-01 7 94294961 94294961 A G PEG10 3'UTR 0.06 TCGA-J7-A8I2-01 8 121243856 121243856 C T COL14A1 Missense_Mutation p.T783M 0.47 tolerated(0.1) benign(0.094) TCGA-J7-A8I2-01 8 144946578 144946578 C A EPPK1 Nonsense_Mutation p.E282* 0.38 TCGA-J7-A8I2-01 9 98638191 98638191 G A ERCC6L2 5'UTR 0.73 TCGA-J7-A8I2-01 X 148607712 148607712 C T IDS Intron 0.88 TCGA-J7-A8I2-01 X 44970638 44970638 A - KDM6A Frame_Shift_Del p.L1396Ffs*142 0.42 TCGA-J7-A8I2-01 X 55033281 55033281 C T APEX2 Silent p.L324L 0.91 TCGA-J7-A8I2-01 X 70472979 70472979 G A ZMYM3 Nonsense_Mutation p.R43* 0.93 TCGA-KV-A6GD-01 10 91177012 91177012 A G IFIT5 Missense_Mutation p.H19R 0.12 deleterious(0) probably_damaging(0.968) TCGA-KV-A6GD-01 11 102100555 102100555 G T YAP1 Nonsense_Mutation p.G467* 0.14 TCGA-KV-A6GD-01 11 128933815 128933815 A G ARHGAP32 Silent p.P275P 0.17 TCGA-KV-A6GD-01 11 17542471 17542471 A C USH1C Missense_Mutation p.L386V 0.11 tolerated_low_confidence(0.12) benign(0) TCGA-KV-A6GD-01 11 56237348 56237348 A T OR5M3 Missense_Mutation p.L209Q 0.12 deleterious(0) benign(0.146) TCGA-KV-A6GD-01 11 56237358 56237358 T A OR5M3 Missense_Mutation p.T206S 0.12 tolerated(0.32) benign(0.014) TCGA-KV-A6GD-01 11 57100282 57100282 C A SSRP1 Silent p.T195T 0.21 TCGA-KV-A6GD-01 11 6191110 6191110 G A OR52B2 Silent p.A149A 0.10 TCGA-KV-A6GD-01 11 64900251 64900251 T - SYVN1 Frame_Shift_Del p.M127Wfs*38 0.16 TCGA-KV-A6GD-01 11 65168213 65168213 C T FRMD8 Missense_Mutation p.R316C 0.16 deleterious(0.01) benign(0.011) TCGA-KV-A6GD-01 11 65631192 65631192 G A MUS81 Missense_Mutation p.A321T 0.18 tolerated(0.15) benign(0.026) TCGA-KV-A6GD-01 11 67811752 67811752 G A TCIRG1 Missense_Mutation p.E321K 0.14 deleterious(0) probably_damaging(0.973) TCGA-KV-A6GD-01 11 71948603 71948603 A G INPPL1 Silent p.P1105P 0.25 TCGA-KV-A6GD-01 11 72423580 72423580 C G ARAP1 Missense_Mutation p.V261L 0.07 tolerated(0.43) probably_damaging(0.992) TCGA-KV-A6GD-01 11 73796809 73796809 C G C2CD3 Missense_Mutation p.C1255S 0.13 tolerated(0.12) benign(0.363) TCGA-KV-A6GD-01 12 107371256 107371256 C T MTERFD3 3'Flank 0.27 TCGA-KV-A6GD-01 12 62954577 62954577 T A MON2 Missense_Mutation p.L1239Q 0.22 deleterious(0) probably_damaging(0.945) TCGA-KV-A6GD-01 12 7302198 7302198 T C CLSTN3 Silent p.D718D 0.29 TCGA-KV-A6GD-01 13 111117912 111117912 T A COL4A2 Missense_Mutation p.F646Y 0.10 benign(0.018) TCGA-KV-A6GD-01 13 41323388 41323388 A T MRPS31 Missense_Mutation p.F282I 0.09 deleterious(0) probably_damaging(0.941) TCGA-KV-A6GD-01 14 74162846 74162846 T C DNAL1 3'UTR 0.14 TCGA-KV-A6GD-01 14 81659105 81659105 T A GTF2A1 Missense_Mutation p.N231Y 0.12 tolerated(0.13) probably_damaging(0.998) TCGA-KV-A6GD-01 14 99929881 99929881 C T SETD3 Silent p.E46E 0.18 TCGA-KV-A6GD-01 15 31197838 31197838 T G FAN1 Missense_Mutation p.H324Q 0.20 tolerated(0.83) benign(0.001) TCGA-KV-A6GD-01 15 75705130 75705130 G A SIN3A Nonsense_Mutation p.Q244* 0.14 TCGA-KV-A6GD-01 15 79350728 79350728 A T RASGRF1 Missense_Mutation p.L160H 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-KV-A6GD-01 16 31373395 31373395 G A ITGAX Splice_Site p.X363_splice 0.13 TCGA-KV-A6GD-01 16 31383064 31383064 G A ITGAX Missense_Mutation p.G707R 0.09 tolerated(0.06) benign(0.442) TCGA-KV-A6GD-01 16 9858489 9858489 T C GRIN2A Missense_Mutation p.Q971R 0.32 tolerated(0.1) benign(0.001) TCGA-KV-A6GD-01 17 48277127 48277127 G A COL1A1 Silent p.C95C 0.10 TCGA-KV-A6GD-01 17 48277128 48277128 C T COL1A1 Missense_Mutation p.C95Y 0.10 unknown(0) TCGA-KV-A6GD-01 17 56083837 56083837 G T SRSF1 Nonsense_Mutation p.Y82* 0.10 TCGA-KV-A6GD-01 17 68131028 68131029 - T KCNJ16 3'UTR 0.08 TCGA-KV-A6GD-01 17 76183279 76183279 C A TK1 5'UTR 0.26 TCGA-KV-A6GD-01 18 70450990 70450990 A T NETO1 Missense_Mutation p.L264H 0.09 deleterious(0) probably_damaging(0.986) TCGA-KV-A6GD-01 19 12540787 12540787 G T ZNF443 3'UTR 0.11 TCGA-KV-A6GD-01 19 2226194 2226194 C T DOT1L Missense_Mutation p.A1225V 0.20 tolerated_low_confidence(0.15) benign(0.001) TCGA-KV-A6GD-01 19 34895341 34895341 G T PDCD2L Silent p.A2A 0.05 TCGA-KV-A6GD-01 19 38948847 38948847 C G RYR1 Nonsense_Mutation p.Y694* 0.14 TCGA-KV-A6GD-01 19 39359638 39359638 A C RINL 3'UTR 0.21 TCGA-KV-A6GD-01 19 43679366 43679366 C T PSG5 Splice_Site p.X322_splice 0.12 TCGA-KV-A6GD-01 19 56487643 56487643 C T NLRP8 Silent p.N950N 0.14 TCGA-KV-A6GD-01 1 112999075 112999075 A G CTTNBP2NL Missense_Mutation p.R321G 0.17 tolerated(0.4) benign(0.001) TCGA-KV-A6GD-01 1 145561841 145561841 G A ANKRD35 Missense_Mutation p.R510Q 0.10 tolerated(0.05) benign(0.238) TCGA-KV-A6GD-01 1 162688920 162688920 G C DDR2 Missense_Mutation p.A23P 0.05 tolerated(0.16) benign(0.004) TCGA-KV-A6GD-01 1 166890003 166890003 C T ILDR2 Missense_Mutation p.D609N 0.23 deleterious(0.03) benign(0.403) TCGA-KV-A6GD-01 1 197072290 197072290 A G ASPM Missense_Mutation p.Y2031H 0.17 deleterious(0.02) probably_damaging(0.992) TCGA-KV-A6GD-01 1 235292137 235292137 C T TOMM20 5'UTR 0.36 TCGA-KV-A6GD-01 1 33625315 33625315 C T TRIM62 Silent p.L245L 0.21 TCGA-KV-A6GD-01 1 35649899 35649899 T C SFPQ 3'UTR 0.14 TCGA-KV-A6GD-01 1 38463363 38463363 G T FHL3 Silent p.P227P 0.05 TCGA-KV-A6GD-01 20 37383625 37383625 T C ACTR5 Silent p.D267D 0.23 TCGA-KV-A6GD-01 20 47361658 47361658 G A PREX1 Silent p.I106I 0.26 TCGA-KV-A6GD-01 22 24384206 24384206 A T GSTT1 Missense_Mutation p.L9Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-KV-A6GD-01 22 29176936 29176936 T A CCDC117 Missense_Mutation p.D80E 0.10 tolerated(0.77) benign(0) TCGA-KV-A6GD-01 2 110873286 110873286 G A MALL Silent p.F28F 0.12 TCGA-KV-A6GD-01 2 113418053 113418053 T C SLC20A1 Missense_Mutation p.L566P 0.16 deleterious(0) possibly_damaging(0.853) TCGA-KV-A6GD-01 2 197878244 197878244 G - HNRNPA3P15 5'Flank 0.18 TCGA-KV-A6GD-01 2 207027278 207027278 A T EEF1B2 Missense_Mutation p.M155L 0.15 tolerated(0.13) benign(0.012) TCGA-KV-A6GD-01 2 228131751 228131751 G T COL4A3 Missense_Mutation p.G484V 0.20 probably_damaging(1) TCGA-KV-A6GD-01 2 238494741 238494741 C A RAB17 Silent p.V19V 0.14 TCGA-KV-A6GD-01 2 242173343 242173343 G A HDLBP Silent p.D1060D 0.05 TCGA-KV-A6GD-01 2 27702392 27702392 T A IFT172 Missense_Mutation p.Y330F 0.12 tolerated(0.14) benign(0.159) TCGA-KV-A6GD-01 2 85361150 85361150 C G TCF7L1 Silent p.R87R 0.15 TCGA-KV-A6GD-01 2 86832185 86832185 A G RNF103 Missense_Mutation p.I280T 0.06 deleterious(0.03) benign(0.116) TCGA-KV-A6GD-01 3 14508107 14508107 A G SLC6A6 Silent p.A272A 0.13 TCGA-KV-A6GD-01 3 152554007 152554007 A G P2RY1 Missense_Mutation p.S146G 0.05 deleterious(0) probably_damaging(0.987) TCGA-KV-A6GD-01 3 50396218 50396218 A G TMEM115 Missense_Mutation p.W93R 0.13 deleterious(0) probably_damaging(1) TCGA-KV-A6GD-01 4 1807653 1807653 T A FGFR3 Missense_Mutation p.L610M 0.33 deleterious(0) probably_damaging(1) TCGA-KV-A6GD-01 4 72413388 72413388 T C SLC4A4 Missense_Mutation p.L882P 0.09 deleterious(0.02) possibly_damaging(0.507) TCGA-KV-A6GD-01 5 134060676 134060676 G C SEC24A Missense_Mutation p.E1058D 0.11 tolerated(0.83) benign(0) TCGA-KV-A6GD-01 5 172518246 172518246 A T CREBRF Missense_Mutation p.E355V 0.19 deleterious(0.02) benign(0.231) TCGA-KV-A6GD-01 5 177649897 177649897 T C PHYKPL Silent p.G219G 0.09 TCGA-KV-A6GD-01 5 50680410 50680410 A G ISL1 Missense_Mutation p.N22D 0.28 tolerated(0.29) benign(0.216) TCGA-KV-A6GD-01 6 109309823 109309823 T - SESN1 Frame_Shift_Del p.T498Lfs*34 0.20 TCGA-KV-A6GD-01 6 13307840 13307840 A T TBC1D7 Missense_Mutation p.S219R 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-KV-A6GD-01 6 143090738 143090738 G T HIVEP2 Missense_Mutation p.P1713H 0.17 deleterious(0) possibly_damaging(0.868) TCGA-KV-A6GD-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.11 TCGA-KV-A6GD-01 7 100276503 100276503 G A GNB2 3'UTR 0.08 TCGA-KV-A6GD-01 7 138344645 138344645 G A SVOPL Missense_Mutation p.T145M 0.12 tolerated(0.16) benign(0.104) TCGA-KV-A6GD-01 7 143049049 143049049 G A CLCN1 Silent p.L986L 0.22 TCGA-KV-A6GD-01 7 6084205 6084205 T G EIF2AK1 Missense_Mutation p.I240L 0.16 tolerated(0.78) benign(0.004) TCGA-KV-A6GD-01 8 103287958 103287958 T C UBR5 Missense_Mutation p.D2203G 0.09 deleterious(0) probably_damaging(0.93) TCGA-KV-A6GD-01 9 73151135 73151136 - T TRPM3 Frame_Shift_Ins p.E1620Rfs*39 0.10 TCGA-KV-A6GD-01 9 90344596 90344596 C T CTSL Missense_Mutation p.P244S 0.21 deleterious(0.02) possibly_damaging(0.774) TCGA-KV-A6GD-01 X 46696623 46696623 G T RP2 Missense_Mutation p.D30Y 0.28 deleterious(0) possibly_damaging(0.781) TCGA-KV-A6GD-01 X 49032013 49032013 G T PRICKLE3 3'UTR 0.28 TCGA-KV-A6GE-01 10 30748425 30748425 T G MAP3K8 Missense_Mutation p.I423S 0.39 deleterious_low_confidence(0.05) benign(0.34) TCGA-KV-A6GE-01 11 117389379 117389380 - G DSCAML1 Frame_Shift_Ins p.T498Hfs*9 0.23 TCGA-KV-A6GE-01 11 66008916 66008916 T A PACS1 Nonsense_Mutation p.Y816* 0.38 TCGA-KV-A6GE-01 11 67135057 67135057 G T CLCF1 Silent p.L19L 0.31 TCGA-KV-A6GE-01 12 22089587 22089587 T C ABCC9 Missense_Mutation p.N8D 0.25 tolerated(0.26) benign(0.008) TCGA-KV-A6GE-01 12 7528456 7528456 T A CD163L1 Silent p.I842I 0.50 TCGA-KV-A6GE-01 13 25021252 25021252 G C PARP4 Missense_Mutation p.P1063A 0.29 tolerated(0.86) benign(0.005) TCGA-KV-A6GE-01 14 23397402 23397402 A G PRMT5 Missense_Mutation p.V83A 0.41 deleterious(0) possibly_damaging(0.853) TCGA-KV-A6GE-01 14 77580825 77580825 C G CIPC 3'UTR 0.50 TCGA-KV-A6GE-01 14 80669247 80669247 A T DIO2 Missense_Mutation p.S239T 0.05 tolerated(0.1) benign(0.135) TCGA-KV-A6GE-01 14 90756895 90756895 C A NRDE2 Missense_Mutation p.Q633H 0.39 deleterious(0.03) benign(0.128) TCGA-KV-A6GE-01 14 94693698 94693700 GGA - PPP4R4 Intron 0.35 TCGA-KV-A6GE-01 15 40751319 40751319 G A BAHD1 Missense_Mutation p.R219Q 0.54 deleterious(0.02) probably_damaging(0.974) TCGA-KV-A6GE-01 15 43749148 43749148 G A TP53BP1 Missense_Mutation p.T553M 0.35 tolerated(0.12) possibly_damaging(0.742) TCGA-KV-A6GE-01 15 62211580 62211580 G A VPS13C Missense_Mutation p.R2516W 0.31 deleterious(0.01) benign(0.028) TCGA-KV-A6GE-01 15 73884465 73884465 G A NPTN Silent p.V151V 0.35 TCGA-KV-A6GE-01 16 1259058 1259058 C T CACNA1H Silent p.A1130A 0.65 TCGA-KV-A6GE-01 16 67236173 67236173 G C ELMO3 Missense_Mutation p.R469P 0.54 deleterious(0.01) possibly_damaging(0.737) TCGA-KV-A6GE-01 16 68386313 68386313 G A PRMT7 Splice_Site p.X525_splice 0.39 TCGA-KV-A6GE-01 16 72132887 72132887 G A DHX38 Missense_Mutation p.E276K 0.51 tolerated(0.58) benign(0.001) TCGA-KV-A6GE-01 17 10369879 10369879 C T MYH4 Missense_Mutation p.A62T 0.47 deleterious(0.02) benign(0.115) TCGA-KV-A6GE-01 17 16721384 16721384 G T AC022596.6 RNA 0.24 TCGA-KV-A6GE-01 17 28614937 28614937 G A BLMH Missense_Mutation p.A117V 0.22 tolerated(0.28) benign(0.093) TCGA-KV-A6GE-01 17 37343149 37343149 C G CACNB1 Missense_Mutation p.V150L 0.44 deleterious(0) probably_damaging(0.986) TCGA-KV-A6GE-01 17 41981854 41981854 C T MPP2 5'UTR 0.16 TCGA-KV-A6GE-01 17 42399919 42399919 C T SLC25A39 Silent p.L64L 0.56 TCGA-KV-A6GE-01 18 12367020 12367020 A G AFG3L2 Missense_Mutation p.S166P 0.35 tolerated(0.45) benign(0.013) TCGA-KV-A6GE-01 19 13265183 13265183 T C IER2 3'UTR 0.35 TCGA-KV-A6GE-01 19 45655438 45655438 G T NKPD1 Missense_Mutation p.R753S 0.13 deleterious(0.01) probably_damaging(0.918) TCGA-KV-A6GE-01 19 53740610 53740610 T C ZNF677 Missense_Mutation p.K457R 0.29 deleterious(0.04) probably_damaging(0.984) TCGA-KV-A6GE-01 19 54822787 54822787 A C LILRA5 Silent p.P203P 0.37 TCGA-KV-A6GE-01 19 9088827 9088827 T C MUC16 Silent p.V996V 0.35 TCGA-KV-A6GE-01 1 186023105 186023105 T G HMCN1 Missense_Mutation p.N2283K 0.23 benign(0.004) TCGA-KV-A6GE-01 1 204413511 204413511 A G PIK3C2B Missense_Mutation p.I907T 0.51 deleterious(0) possibly_damaging(0.848) TCGA-KV-A6GE-01 1 223286235 223286235 T A TLR5 Missense_Mutation p.T47S 0.41 tolerated(0.51) benign(0.001) TCGA-KV-A6GE-01 1 232539257 232539257 C T SIPA1L2 Missense_Mutation p.G1626E 0.44 tolerated(1) benign(0.084) TCGA-KV-A6GE-01 20 42089748 42089748 T A SRSF6 3'UTR 0.51 TCGA-KV-A6GE-01 21 45502876 45502876 G A TRAPPC10 Nonsense_Mutation p.W644* 0.48 TCGA-KV-A6GE-01 22 42195440 42195440 A G MEI1 3'UTR 0.21 TCGA-KV-A6GE-01 2 114258679 114258679 G T FOXD4L1 3'UTR 0.10 TCGA-KV-A6GE-01 2 179424419 179424419 T A TTN Missense_Mutation p.N28814Y 0.28 TCGA-KV-A6GE-01 2 27480036 27480036 G C SLC30A3 Missense_Mutation p.L255V 0.26 tolerated(0.29) benign(0.124) TCGA-KV-A6GE-01 2 48132850 48132850 C G FBXO11 Missense_Mutation p.V4L 0.28 deleterious_low_confidence(0) unknown(0) TCGA-KV-A6GE-01 3 129281631 129281631 A G PLXND1 Silent p.L1608L 0.48 TCGA-KV-A6GE-01 3 170846580 170846580 G A TNIK Missense_Mutation p.P566S 0.44 tolerated(0.35) possibly_damaging(0.596) TCGA-KV-A6GE-01 3 52022828 52022828 C A ACY1 Missense_Mutation p.R350S 0.48 deleterious(0.01) probably_damaging(0.951) TCGA-KV-A6GE-01 3 5229984 5229984 C G EDEM1 Missense_Mutation p.P165R 0.59 tolerated(0.11) possibly_damaging(0.823) TCGA-KV-A6GE-01 4 100871330 100871330 C G H2AFZ 5'UTR 0.40 TCGA-KV-A6GE-01 4 88084516 88084516 T C KLHL8 3'UTR 0.60 TCGA-KV-A6GE-01 5 113740442 113740442 A G KCNN2 Missense_Mutation p.N297S 0.29 deleterious(0) possibly_damaging(0.838) TCGA-KV-A6GE-01 5 139947880 139947880 T A SLC35A4 3'UTR 0.31 TCGA-KV-A6GE-01 5 68849597 68849597 C A OCLN 3'UTR 0.25 TCGA-KV-A6GE-01 6 132211511 132211512 GA T ENPP1 Frame_Shift_Del p.E880Yfs*3 0.28 TCGA-KV-A6GE-01 6 37622225 37622225 G T MDGA1 Silent p.P269P 0.44 TCGA-KV-A6GE-01 6 6222265 6222266 - CACA F13A1 Frame_Shift_Ins p.W371Cfs*9 0.43 TCGA-KV-A6GE-01 6 76023889 76023889 T A FILIP1 Missense_Mutation p.K553N 0.33 deleterious(0.01) benign(0.132) TCGA-KV-A6GE-01 6 99894085 99894085 T C USP45 Silent p.R521R 0.38 TCGA-KV-A6GE-01 7 73246958 73246958 G C CLDN4 3'UTR 0.41 TCGA-KV-A6GE-01 7 99686962 99686962 T C COPS6 Silent p.A42A 0.44 TCGA-KV-A6GE-01 8 102504777 102504777 A T GRHL2 5'UTR 0.76 TCGA-KV-A6GE-01 8 102504796 102504796 A G GRHL2 5'UTR 0.91 TCGA-KV-A6GE-01 8 56686242 56686242 G A TGS1 Missense_Mutation p.C22Y 0.83 tolerated(1) benign(0) TCGA-KV-A6GE-01 9 114338803 114338803 A G PTGR1 Intron 0.31 TCGA-KV-A6GE-01 9 35736272 35736272 T C CREB3 Missense_Mutation p.S249P 0.37 tolerated(0.11) probably_damaging(0.982) TCGA-KV-A74V-01 10 104173691 104173691 G T PSD Missense_Mutation p.P463H 0.37 tolerated(0.61) benign(0.006) TCGA-KV-A74V-01 10 104173704 104173704 C T PSD Missense_Mutation p.A459T 0.40 deleterious(0.04) possibly_damaging(0.449) TCGA-KV-A74V-01 11 66034785 66034785 G T KLC2 3'UTR 0.60 TCGA-KV-A74V-01 12 8073870 8073870 G A SLC2A3 3'UTR 0.15 TCGA-KV-A74V-01 15 43819753 43819753 T G MAP1A Missense_Mutation p.S2028A 0.52 benign(0.004) TCGA-KV-A74V-01 16 14970314 14970314 A T NOMO1 Missense_Mutation p.S819C 0.02 deleterious(0.01) possibly_damaging(0.711) TCGA-KV-A74V-01 16 2135239 2135240 - T TSC2 Frame_Shift_Ins p.E1528* 0.10 TCGA-KV-A74V-01 16 4562486 4562486 T G CDIP1 3'UTR 0.55 TCGA-KV-A74V-01 16 66878375 66878375 C T CA7 5'UTR 0.07 TCGA-KV-A74V-01 16 67576736 67576736 G T FAM65A Nonsense_Mutation p.E703* 0.08 TCGA-KV-A74V-01 18 67816232 67816232 G T RTTN Silent p.L738L 0.16 TCGA-KV-A74V-01 20 57613656 57613656 C T SLMO2 Missense_Mutation p.M22I 0.19 tolerated(0.22) benign(0.125) TCGA-KV-A74V-01 21 33371184 33371184 T A HUNK Missense_Mutation p.L611H 0.82 deleterious_low_confidence(0.03) possibly_damaging(0.599) TCGA-KV-A74V-01 21 33641139 33641139 C G MIS18A 3'UTR 0.63 TCGA-KV-A74V-01 22 50170697 50170697 C T BRD1 Missense_Mutation p.A905T 0.45 tolerated(0.16) probably_damaging(0.998) TCGA-KV-A74V-01 2 141122239 141122239 C A LRP1B Missense_Mutation p.D3708Y 0.10 probably_damaging(0.961) TCGA-KV-A74V-01 2 169952139 169952139 T G DHRS9 Missense_Mutation p.S274R 0.65 deleterious(0) possibly_damaging(0.901) TCGA-KV-A74V-01 2 210636827 210636827 G T UNC80 Nonsense_Mutation p.E11* 0.11 TCGA-KV-A74V-01 2 219617904 219617904 C A TTLL4 Missense_Mutation p.P1085Q 0.62 tolerated(0.65) benign(0.011) TCGA-KV-A74V-01 2 27603123 27603123 G A ZNF513 Intron 0.10 TCGA-KV-A74V-01 3 122134317 122134317 T C WDR5B Missense_Mutation p.N20S 0.50 tolerated(1) benign(0) TCGA-KV-A74V-01 3 138180998 138180998 C T ESYT3 Missense_Mutation p.P289S 0.05 deleterious(0) probably_damaging(0.998) TCGA-KV-A74V-01 3 152881544 152881545 - A RAP2B 3'UTR 0.26 TCGA-KV-A74V-01 4 106473951 106473951 A - ARHGEF38 Frame_Shift_Del p.N11Tfs*12 0.16 TCGA-KV-A74V-01 4 4270271 4270271 T A LYAR Nonsense_Mutation p.K331* 0.13 TCGA-KV-A74V-01 4 5500946 5500946 G A STK32B 3'UTR 0.11 TCGA-KV-A74V-01 4 70620844 70620844 A G SULT1B1 Missense_Mutation p.I31T 0.09 deleterious(0) benign(0.225) TCGA-KV-A74V-01 4 88048262 88048262 T - AFF1 Frame_Shift_Del p.F966Lfs*10 0.32 TCGA-KV-A74V-01 4 94750489 94750489 G T ATOH1 Missense_Mutation p.D138Y 0.47 deleterious(0) possibly_damaging(0.452) TCGA-KV-A74V-01 6 160494461 160494463 TCT - IGF2R In_Frame_Del p.F1638del 0.11 TCGA-KV-A74V-01 7 157333201 157333201 C T PTPRN2 3'UTR 0.32 TCGA-KV-A74V-01 8 19813385 19813385 G A LPL Missense_Mutation p.R270H 0.28 deleterious(0) probably_damaging(0.999) TCGA-KV-A74V-01 8 82615255 82615255 A T ZFAND1 Missense_Mutation p.F195L 0.36 tolerated(0.33) benign(0.011) TCGA-KV-A74V-01 X 5821558 5821558 C T NLGN4X Silent p.E387E 0.65 TCGA-MH-A55W-01 10 134912186 134912187 TT - GPR123 Frame_Shift_Del p.F59Lfs*252 0.29 TCGA-MH-A55W-01 10 55600213 55600213 C A PCDH15 Missense_Mutation p.V1284F 0.40 deleterious(0) probably_damaging(0.996) TCGA-MH-A55W-01 10 83635808 83635808 T C NRG3 Missense_Mutation p.S238P 0.41 deleterious(0) probably_damaging(0.994) TCGA-MH-A55W-01 10 96818110 96818110 G C CYP2C8 Missense_Mutation p.F267L 0.40 tolerated(0.1) probably_damaging(0.948) TCGA-MH-A55W-01 10 97096528 97096528 T G SORBS1 Missense_Mutation p.K1130T 0.43 deleterious_low_confidence(0.04) benign(0.149) TCGA-MH-A55W-01 11 118984691 118984704 TTTCCAAGGTAACA - C2CD2L Splice_Site p.X540_splice 0.28 TCGA-MH-A55W-01 11 124847425 124847425 G C CCDC15 Missense_Mutation p.G228R 0.31 tolerated(0.61) benign(0.015) TCGA-MH-A55W-01 11 125478106 125478106 T G STT3A Missense_Mutation p.F295V 0.45 deleterious(0.03) possibly_damaging(0.77) TCGA-MH-A55W-01 11 63671476 63671476 C G MARK2 Silent p.S511S 0.30 TCGA-MH-A55W-01 11 65107956 65107956 C G DPF2 Missense_Mutation p.Q45E 0.37 deleterious(0) probably_damaging(0.988) TCGA-MH-A55W-01 11 66052069 66052069 C T YIF1A 3'UTR 0.10 TCGA-MH-A55W-01 11 89431787 89431788 TG - FOLH1B RNA 0.16 TCGA-MH-A55W-01 11 92599961 92599961 T A FAT3 Missense_Mutation p.L3905M 0.38 benign(0.402) TCGA-MH-A55W-01 12 107371368 107371368 A C MTERFD3 Missense_Mutation p.F375L 0.55 deleterious(0) possibly_damaging(0.664) TCGA-MH-A55W-01 12 132334421 132334421 C T MMP17 Missense_Mutation p.P427S 0.30 deleterious(0) probably_damaging(0.934) TCGA-MH-A55W-01 12 275007 275007 G A IQSEC3 Silent p.L974L 0.53 TCGA-MH-A55W-01 12 46342224 46342224 T C SCAF11 Missense_Mutation p.I132V 0.50 tolerated(0.78) benign(0.001) TCGA-MH-A55W-01 12 54426863 54426863 C G HOXC5 5'UTR 0.66 TCGA-MH-A55W-01 12 7527336 7527336 G T CD163L1 Silent p.R1037R 0.28 TCGA-MH-A55W-01 13 48571053 48571053 C G SUCLA2 Missense_Mutation p.E66Q 0.31 tolerated(0.43) benign(0.144) TCGA-MH-A55W-01 13 99127511 99127511 G T STK24 Missense_Mutation p.D156E 0.20 deleterious(0) probably_damaging(1) TCGA-MH-A55W-01 14 103969341 103969341 G - MARK3 Frame_Shift_Del p.R680Pfs*46 0.26 TCGA-MH-A55W-01 14 24775587 24775587 G C CIDEB Missense_Mutation p.P110R 0.33 deleterious(0.01) possibly_damaging(0.744) TCGA-MH-A55W-01 14 58680398 58680398 G C ACTR10 Missense_Mutation p.G167A 0.58 tolerated(0.49) benign(0.391) TCGA-MH-A55W-01 14 78036838 78036838 C A SPTLC2 Missense_Mutation p.K215N 0.44 tolerated(0.13) benign(0.049) TCGA-MH-A55W-01 14 91681816 91681816 C T C14orf159 Silent p.H544H 0.42 TCGA-MH-A55W-01 15 44066413 44066413 A C ELL3 Missense_Mutation p.I335M 0.41 tolerated(0.2) benign(0.181) TCGA-MH-A55W-01 15 59139573 59139573 A T FAM63B Silent p.V482V 0.34 TCGA-MH-A55W-01 15 64200745 64200745 G A DAPK2 Missense_Mutation p.P363S 0.23 tolerated(0.73) benign(0.027) TCGA-MH-A55W-01 15 89400337 89400337 T A ACAN Missense_Mutation p.S1507R 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-MH-A55W-01 16 24581079 24581079 A T RBBP6 Missense_Mutation p.N1023I 0.35 deleterious_low_confidence(0.05) unknown(0) TCGA-MH-A55W-01 16 75513372 75513372 C T CHST6 Missense_Mutation p.D119N 0.62 tolerated(0.28) possibly_damaging(0.819) TCGA-MH-A55W-01 17 20860024 20860024 T G RP11-381P6.1 Splice_Site 0.40 TCGA-MH-A55W-01 17 37099134 37099134 A G FBXO47 Missense_Mutation p.L327P 0.34 deleterious(0) probably_damaging(0.992) TCGA-MH-A55W-01 17 46103806 46103806 C G COPZ2 Silent p.S205S 0.28 TCGA-MH-A55W-01 17 79518169 79518169 A G C17orf70 Silent p.P117P 0.23 TCGA-MH-A55W-01 17 8215790 8215790 T G ARHGEF15 Missense_Mutation p.S145A 0.49 deleterious_low_confidence(0.02) benign(0.156) TCGA-MH-A55W-01 18 28966661 28966661 T A DSG4 Missense_Mutation p.F32Y 0.40 tolerated(1) benign(0.001) TCGA-MH-A55W-01 18 29116286 29116286 T C DSG2 Silent p.V515V 0.30 TCGA-MH-A55W-01 18 3508641 3508641 G A DLGAP1 Missense_Mutation p.T833I 0.33 deleterious(0) possibly_damaging(0.485) TCGA-MH-A55W-01 18 9524704 9524704 C G RALBP1 Missense_Mutation p.P389R 0.37 deleterious(0.01) probably_damaging(0.946) TCGA-MH-A55W-01 19 12502160 12502160 G T ZNF799 Nonsense_Mutation p.S351* 0.39 TCGA-MH-A55W-01 19 55570627 55570627 C A RDH13 Missense_Mutation p.G28W 0.42 deleterious(0.01) probably_damaging(0.989) TCGA-MH-A55W-01 19 58102721 58102721 T A ZIK1 3'UTR 0.45 TCGA-MH-A55W-01 1 109807154 109807154 G A CELSR2 Missense_Mutation p.G1790S 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-MH-A55W-01 1 150531493 150531493 G T ADAMTSL4 Missense_Mutation p.S872I 0.62 deleterious(0.01) probably_damaging(0.99) TCGA-MH-A55W-01 1 152059687 152059687 C T TCHHL1 Silent p.V157V 0.30 TCGA-MH-A55W-01 1 154744543 154744543 C T KCNN3 Silent p.K452K 0.40 TCGA-MH-A55W-01 1 156027791 156027791 G - LAMTOR2 Frame_Shift_Del p.R85Qfs*63 0.28 TCGA-MH-A55W-01 1 156707153 156707156 GGGA - MRPL24 3'UTR 0.34 TCGA-MH-A55W-01 1 19482811 19482811 G A UBR4 Missense_Mutation p.P2009L 0.38 probably_damaging(0.991) TCGA-MH-A55W-01 1 205588957 205588957 C G ELK4 Intron 0.35 TCGA-MH-A55W-01 1 247836182 247836182 C A OR13G1 Silent p.T54T 0.30 TCGA-MH-A55W-01 1 247836183 247836183 G A OR13G1 Missense_Mutation p.T54M 0.30 deleterious(0.02) benign(0.006) TCGA-MH-A55W-01 1 36820910 36820910 A T STK40 Missense_Mutation p.L156H 0.35 deleterious(0) probably_damaging(0.992) TCGA-MH-A55W-01 1 39880152 39880152 A T KIAA0754 Silent p.V1269V 0.25 TCGA-MH-A55W-01 1 65775557 65775557 C T DNAJC6 Silent p.A43A 0.40 TCGA-MH-A55W-01 1 87563650 87563650 A G HS2ST1 Intron 0.13 TCGA-MH-A55W-01 20 18464267 18464267 T A POLR3F 3'UTR 0.56 TCGA-MH-A55W-01 20 46254225 46254225 G A NCOA3 Silent p.Q119Q 0.32 TCGA-MH-A55W-01 20 49509272 49509272 A G ADNP Missense_Mutation p.L660P 0.45 tolerated(0.13) probably_damaging(0.998) TCGA-MH-A55W-01 21 15561570 15561570 G A LIPI Nonsense_Mutation p.Q94* 0.29 TCGA-MH-A55W-01 21 38309141 38309141 C G HLCS Missense_Mutation p.E202Q 0.36 tolerated(0.19) benign(0.157) TCGA-MH-A55W-01 21 45949793 45949793 G A TSPEAR Silent p.T226T 0.46 TCGA-MH-A55W-01 22 38690131 38690131 C T CSNK1E Missense_Mutation p.R401Q 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-MH-A55W-01 22 51160300 51160300 C G SHANK3 Missense_Mutation p.P1363A 0.26 benign(0.008) TCGA-MH-A55W-01 2 102014128 102014128 G T RFX8 Missense_Mutation p.P435H 0.28 deleterious(0) probably_damaging(0.998) TCGA-MH-A55W-01 2 109380179 109380179 A - RANBP2 Frame_Shift_Del p.N1062Tfs*6 0.32 TCGA-MH-A55W-01 2 110922202 110922202 A T NPHP1 Missense_Mutation p.N278K 0.26 deleterious(0.04) benign(0.021) TCGA-MH-A55W-01 2 122161975 122161975 G C CLASP1 Missense_Mutation p.T902S 0.27 deleterious(0.03) benign(0.057) TCGA-MH-A55W-01 2 152563462 152563468 TTATAAT - NEB Frame_Shift_Del p.D360Vfs*14 0.12 TCGA-MH-A55W-01 2 17962535 17962535 C G GEN1 Missense_Mutation p.Q686E 0.48 tolerated(0.32) benign(0.003) TCGA-MH-A55W-01 2 241725900 241725900 C T KIF1A Missense_Mutation p.V154I 0.08 deleterious(0) probably_damaging(0.995) TCGA-MH-A55W-01 2 24469667 24469667 A G ITSN2 Silent p.P1128P 0.50 TCGA-MH-A55W-01 2 25051028 25051028 G A ADCY3 Silent p.L725L 0.58 TCGA-MH-A55W-01 2 25051029 25051029 A C ADCY3 Missense_Mutation p.L725R 0.58 deleterious(0) probably_damaging(0.999) TCGA-MH-A55W-01 2 27660178 27660178 A T NRBP1 Missense_Mutation p.Q285L 0.56 deleterious(0.03) benign(0.396) TCGA-MH-A55W-01 2 89567889 89567889 A T IGKV1-33 Missense_Mutation p.S74T 0.15 tolerated(0.21) benign(0.026) TCGA-MH-A55W-01 3 101405543 101405543 A G RPL24 5'UTR 0.33 TCGA-MH-A55W-01 3 108288411 108288411 C T KIAA1524 Missense_Mutation p.R313H 0.40 deleterious(0) probably_damaging(0.998) TCGA-MH-A55W-01 3 113120585 113120585 A C WDR52 Missense_Mutation p.I391R 0.43 deleterious(0) possibly_damaging(0.811) TCGA-MH-A55W-01 3 129214436 129214436 T - IFT122 Frame_Shift_Del p.F783Lfs*19 0.29 TCGA-MH-A55W-01 3 132319273 132319273 A C ACKR4 Missense_Mutation p.Y11S 0.37 deleterious(0.05) benign(0.22) TCGA-MH-A55W-01 3 15084290 15084290 G - NR2C2 Intron 0.28 TCGA-MH-A55W-01 3 169496621 169496621 G A MYNN Missense_Mutation p.C111Y 0.39 deleterious(0.03) probably_damaging(1) TCGA-MH-A55W-01 3 186435425 186435425 G T KNG1 Missense_Mutation p.D32Y 0.24 deleterious(0) probably_damaging(0.976) TCGA-MH-A55W-01 3 46009857 46009857 C A FYCO1 Missense_Mutation p.E323D 0.26 tolerated(0.08) benign(0.018) TCGA-MH-A55W-01 3 50155814 50155814 T A RBM5 Nonsense_Mutation p.Y791* 0.42 TCGA-MH-A55W-01 4 141600812 141600812 G A TBC1D9 Silent p.S182S 0.37 TCGA-MH-A55W-01 4 26585819 26585819 T C TBC1D19 Silent p.L2L 0.41 TCGA-MH-A55W-01 4 71702003 71702003 A G GRSF1 Missense_Mutation p.L129P 0.29 deleterious(0.03) possibly_damaging(0.758) TCGA-MH-A55W-01 4 8607801 8607801 G C CPZ Silent p.L265L 0.34 TCGA-MH-A55W-01 5 176709581 176709584 AAGT - NSD1 Splice_Site p.X2003_splice 0.32 TCGA-MH-A55W-01 5 38418272 38418272 C A EGFLAM Silent p.G533G 0.28 TCGA-MH-A55W-01 5 89979468 89979468 T C GPR98 Silent p.D1910D 0.35 TCGA-MH-A55W-01 6 151671659 151671659 C - AKAP12 Frame_Shift_Del p.Q712Rfs*54 0.25 TCGA-MH-A55W-01 6 151686673 151686676 TTTC - ZBTB2 Frame_Shift_Del p.E509Pfs*4 0.34 TCGA-MH-A55W-01 6 32038155 32038155 C T TNXB Missense_Mutation p.R1676H 0.34 benign(0.009) TCGA-MH-A55W-01 6 39159405 39159412 TTGTGGAC - KCNK5 Frame_Shift_Del p.V252Sfs*3 0.29 TCGA-MH-A55W-01 6 51768400 51768400 T G PKHD1 Missense_Mutation p.I2331L 0.35 tolerated(0.2) benign(0.07) TCGA-MH-A55W-01 6 90459294 90459294 G A MDN1 Nonsense_Mutation p.Q1195* 0.50 TCGA-MH-A55W-01 7 135370357 135370357 C A SLC13A4 Silent p.L506L 0.36 TCGA-MH-A55W-01 7 33380559 33380559 G C BBS9 Missense_Mutation p.V417L 0.35 tolerated(0.06) benign(0.019) TCGA-MH-A55W-01 7 56046042 56046042 G C GBAS Splice_Site p.X78_splice 0.40 TCGA-MH-A55W-01 7 73150888 73150888 C G ABHD11 3'UTR 0.48 TCGA-MH-A55W-01 7 99711723 99711723 T - TAF6 Frame_Shift_Del p.Q74Rfs*3 0.30 TCGA-MH-A55W-01 8 41582026 41582026 T G ANK1 Missense_Mutation p.N253T 0.16 deleterious(0) possibly_damaging(0.492) TCGA-MH-A55W-01 9 131021446 131021446 C T GOLGA2 Silent p.Q672Q 0.36 TCGA-MH-A55W-01 9 132593305 132593305 G T C9orf78 Silent p.I129I 0.36 TCGA-MH-A55W-01 X 10066562 10066562 A C WWC3 Missense_Mutation p.K225T 0.71 tolerated(0.07) benign(0.373) TCGA-MH-A55W-01 X 123020210 123020210 G T XIAP Missense_Mutation p.R233L 0.57 deleterious(0.01) benign(0.345) TCGA-MH-A55W-01 X 152938463 152938463 C G PNCK Splice_Site p.X106_splice 0.84 TCGA-MH-A55Z-01 10 116100456 116100456 G A AFAP1L2 Silent p.F17F 0.36 TCGA-MH-A55Z-01 10 129902143 129902143 G - MKI67 Frame_Shift_Del p.P2654Qfs*4 0.32 TCGA-MH-A55Z-01 10 31134006 31134006 G A ZNF438 Missense_Mutation p.L791F 0.38 deleterious(0) probably_damaging(0.98) TCGA-MH-A55Z-01 10 43088357 43088357 T C ZNF33B Missense_Mutation p.I681V 0.40 tolerated(0.57) benign(0.011) TCGA-MH-A55Z-01 10 99116859 99116859 G A RRP12 Nonsense_Mutation p.R1296* 0.47 TCGA-MH-A55Z-01 11 108380539 108380539 C T EXPH5 Missense_Mutation p.E1899K 0.32 deleterious(0) possibly_damaging(0.819) TCGA-MH-A55Z-01 11 125497532 125497532 A C CHEK1 Missense_Mutation p.E32D 0.48 tolerated(0.38) benign(0.389) TCGA-MH-A55Z-01 11 129747271 129747271 G A NFRKB Silent p.D532D 0.38 TCGA-MH-A55Z-01 11 27680049 27680056 CATGGGGG - BDNF Frame_Shift_Del p.A101Efs*40 0.36 TCGA-MH-A55Z-01 11 45277229 45277229 G C SYT13 Missense_Mutation p.L133V 0.37 tolerated(0.29) benign(0.08) TCGA-MH-A55Z-01 11 4936503 4936503 T C OR51G2 Missense_Mutation p.I131V 0.38 deleterious(0.01) benign(0.085) TCGA-MH-A55Z-01 11 65149553 65149553 G A SLC25A45 Intron 0.29 TCGA-MH-A55Z-01 11 65319017 65319017 A T LTBP3 Splice_Site p.X516_splice 0.33 TCGA-MH-A55Z-01 11 65412463 65412463 G A SIPA1 Missense_Mutation p.R341Q 0.48 deleterious(0.02) probably_damaging(0.961) TCGA-MH-A55Z-01 12 101588897 101588897 C T SLC5A8 Silent p.V171V 0.57 TCGA-MH-A55Z-01 12 19500042 19500042 A G PLEKHA5 Missense_Mutation p.R942G 0.27 deleterious(0.02) possibly_damaging(0.546) TCGA-MH-A55Z-01 12 39709737 39709737 T C KIF21A Missense_Mutation p.H1315R 0.56 tolerated(0.63) benign(0.028) TCGA-MH-A55Z-01 12 7053729 7053729 G T C12orf57 Missense_Mutation p.G48V 0.60 tolerated(0.6) probably_damaging(0.999) TCGA-MH-A55Z-01 12 7818467 7818467 A G APOBEC1 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0) benign(0.343) TCGA-MH-A55Z-01 13 94197565 94197565 A T GPC6 Missense_Mutation p.E70D 0.43 tolerated(0.13) benign(0.316) TCGA-MH-A55Z-01 14 105268528 105268528 G A ZBTB42 Missense_Mutation p.V332M 0.40 deleterious(0.01) benign(0.057) TCGA-MH-A55Z-01 14 42360768 42360768 C T LRFN5 Silent p.S567S 0.36 TCGA-MH-A55Z-01 14 51194272 51194272 A C NIN Intron 0.44 TCGA-MH-A55Z-01 14 60574699 60574699 G T PCNXL4 Intron 0.31 TCGA-MH-A55Z-01 14 75558059 75558059 G A NEK9 Nonsense_Mutation p.R786* 0.44 TCGA-MH-A55Z-01 15 31251264 31251264 G C MTMR10 Silent p.S273S 0.44 TCGA-MH-A55Z-01 15 49421727 49421727 G A COPS2 Missense_Mutation p.L366F 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-MH-A55Z-01 15 51294808 51294808 T G AP4E1 Silent p.T1121T 0.53 TCGA-MH-A55Z-01 16 4164714 4164714 G A ADCY9 Silent p.L244L 0.37 TCGA-MH-A55Z-01 17 11998978 11998978 C T MAP2K4 Silent p.Y160Y 0.27 TCGA-MH-A55Z-01 17 17075111 17075111 G A MPRIP Missense_Mutation p.R748Q 0.60 tolerated(0.35) benign(0.417) TCGA-MH-A55Z-01 17 18920675 18920675 G C SLC5A10 Intron 0.23 TCGA-MH-A55Z-01 17 3513840 3513840 A - SHPK 3'UTR 0.24 TCGA-MH-A55Z-01 17 40729246 40729246 G C PSMC3IP Missense_Mutation p.I70M 0.38 deleterious(0) probably_damaging(0.943) TCGA-MH-A55Z-01 17 45682709 45682709 G A NPEPPS Missense_Mutation p.G629E 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-MH-A55Z-01 17 47780367 47780367 T G SLC35B1 Missense_Mutation p.I257L 0.35 deleterious(0.04) possibly_damaging(0.866) TCGA-MH-A55Z-01 17 54969126 54969126 C G TRIM25 Missense_Mutation p.A610P 0.60 deleterious(0.04) possibly_damaging(0.85) TCGA-MH-A55Z-01 18 21508090 21508090 T C LAMA3 Silent p.F2727F 0.35 TCGA-MH-A55Z-01 18 72345617 72345617 G A ZNF407 Missense_Mutation p.C881Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-MH-A55Z-01 18 72345618 72345618 C T ZNF407 Silent p.C881C 0.29 TCGA-MH-A55Z-01 19 11134305 11134305 A G SMARCA4 Missense_Mutation p.K991E 0.37 probably_damaging(0.981) TCGA-MH-A55Z-01 19 15917883 15917883 A - OR10H1 3'UTR 0.32 TCGA-MH-A55Z-01 19 41599643 41599643 T G CYP2A13 Missense_Mutation p.F314V 0.40 deleterious(0.01) probably_damaging(0.969) TCGA-MH-A55Z-01 19 43358246 43358246 G C PSG10P RNA 0.34 TCGA-MH-A55Z-01 19 58579372 58579372 C T ZNF135 Missense_Mutation p.S531L 0.34 deleterious(0.03) benign(0.033) TCGA-MH-A55Z-01 1 116941337 116941337 A G ATP1A1 Missense_Mutation p.D740G 0.38 deleterious(0) probably_damaging(0.959) TCGA-MH-A55Z-01 1 158517180 158517180 C T OR6Y1 Missense_Mutation p.R239H 0.48 deleterious(0.01) benign(0.2) TCGA-MH-A55Z-01 1 171506567 171506567 A G PRRC2C Missense_Mutation p.Q818R 0.39 unknown(0) TCGA-MH-A55Z-01 1 19504023 19504023 G C UBR4 Missense_Mutation p.R857G 0.52 probably_damaging(0.975) TCGA-MH-A55Z-01 1 196716508 196716508 T A CFH 3'UTR 0.50 TCGA-MH-A55Z-01 1 212548558 212548558 G A TMEM206 Missense_Mutation p.P351S 0.36 deleterious(0.05) probably_damaging(0.999) TCGA-MH-A55Z-01 1 228469852 228469852 G T OBSCN Nonsense_Mutation p.E3235* 0.47 TCGA-MH-A55Z-01 1 235884164 235884164 G A LYST Silent p.L3119L 0.41 TCGA-MH-A55Z-01 1 35223633 35223633 C T GJB5 Silent p.T234T 0.43 TCGA-MH-A55Z-01 1 38040324 38040324 C G GNL2 Missense_Mutation p.W415S 0.48 deleterious(0) probably_damaging(0.999) TCGA-MH-A55Z-01 1 39797627 39797627 T C MACF1 Intron 0.41 TCGA-MH-A55Z-01 1 40362980 40362980 G C MYCL 3'UTR 0.56 TCGA-MH-A55Z-01 1 94655701 94655702 - ATT ARHGAP29 Intron 0.37 TCGA-MH-A55Z-01 20 35438421 35438421 C G SOGA1 Missense_Mutation p.K849N 0.37 deleterious(0.01) benign(0.379) TCGA-MH-A55Z-01 20 57282247 57282247 A C NPEPL1 Silent p.A297A 0.44 TCGA-MH-A55Z-01 21 45107950 45107950 C G RRP1B Silent p.P565P 0.52 TCGA-MH-A55Z-01 21 46066418 46066418 G A KRTAP10-11 Missense_Mutation p.D15N 0.40 tolerated(0.57) unknown(0) TCGA-MH-A55Z-01 22 30987847 30987847 G A PES1 5'UTR 0.22 TCGA-MH-A55Z-01 2 107459932 107459932 C G ST6GAL2 Missense_Mutation p.V168L 0.38 benign(0) TCGA-MH-A55Z-01 2 109381778 109381778 C G RANBP2 Missense_Mutation p.P1595A 0.46 tolerated(0.18) benign(0.007) TCGA-MH-A55Z-01 2 152235994 152235994 A T TNFAIP6 Missense_Mutation p.T261S 0.48 tolerated(0.44) benign(0.001) TCGA-MH-A55Z-01 2 177016225 177016225 A T HOXD3 5'UTR 0.64 TCGA-MH-A55Z-01 2 210742711 210742711 G A UNC80 Missense_Mutation p.G1294R 0.33 benign(0.214) TCGA-MH-A55Z-01 2 217285132 217285132 G A SMARCAL1 Missense_Mutation p.A325T 0.38 tolerated(0.09) possibly_damaging(0.893) TCGA-MH-A55Z-01 2 217541549 217541549 C G IGFBP5 Silent p.G248G 0.39 TCGA-MH-A55Z-01 2 219137578 219137578 A G PNKD Intron 0.35 TCGA-MH-A55Z-01 2 228145153 228145153 T C COL4A3 Intron 0.39 TCGA-MH-A55Z-01 2 233633228 233633228 A T KCNJ13 Silent p.P252P 0.44 TCGA-MH-A55Z-01 2 233659498 233659498 T A GIGYF2 Silent p.P462P 0.50 TCGA-MH-A55Z-01 2 25469542 25469542 C T DNMT3A Nonsense_Mutation p.W409* 0.42 TCGA-MH-A55Z-01 2 27801772 27801772 A T C2orf16 Missense_Mutation p.E778V 0.39 tolerated(0.07) possibly_damaging(0.905) TCGA-MH-A55Z-01 2 31558684 31558684 A G XDH 3'UTR 0.58 TCGA-MH-A55Z-01 2 39008788 39008788 C T GEMIN6 Silent p.F86F 0.34 TCGA-MH-A55Z-01 2 45688 45688 C T FAM110C Missense_Mutation p.G233E 0.56 deleterious(0) probably_damaging(1) TCGA-MH-A55Z-01 2 71607375 71607375 T C ZNF638 Silent p.T763T 0.41 TCGA-MH-A55Z-01 2 74643027 74643027 G T C2orf81 Silent p.R96R 0.41 TCGA-MH-A55Z-01 2 97359251 97359251 A T FER1L5 RNA 0.41 TCGA-MH-A55Z-01 3 113697143 113697143 A C KIAA1407 Missense_Mutation p.F832L 0.40 tolerated(1) benign(0.001) TCGA-MH-A55Z-01 3 183669307 183669307 G C ABCC5 Missense_Mutation p.L956V 0.58 tolerated(0.06) possibly_damaging(0.627) TCGA-MH-A55Z-01 3 197408102 197408102 G A KIAA0226 Silent p.F776F 0.46 TCGA-MH-A55Z-01 4 100434294 100434294 T C C4orf17 Missense_Mutation p.I19T 0.44 tolerated(0.38) benign(0.122) TCGA-MH-A55Z-01 4 107163709 107163709 C - TBCK Frame_Shift_Del p.G363Vfs*14 0.39 TCGA-MH-A55Z-01 4 110610404 110610404 T C CASP6 3'UTR 0.61 TCGA-MH-A55Z-01 4 118975229 118975229 T G NDST3 Missense_Mutation p.L55R 0.32 tolerated_low_confidence(0.37) benign(0.354) TCGA-MH-A55Z-01 4 152096316 152096326 TCTCCAGAAGC ACTCCAAAAG SH3D19 Frame_Shift_Del p.A64Lfs*15 0.51 TCGA-MH-A55Z-01 4 162307106 162307106 T A FSTL5 Silent p.I779I 0.46 TCGA-MH-A55Z-01 4 177089815 177089815 G C WDR17 Missense_Mutation p.V1034L 0.39 tolerated_low_confidence(0.7) benign(0) TCGA-MH-A55Z-01 4 2916729 2916729 A G ADD1 Missense_Mutation p.Y606C 0.43 deleterious(0) probably_damaging(0.978) TCGA-MH-A55Z-01 4 41985651 41985651 T C DCAF4L1 3'UTR 0.37 TCGA-MH-A55Z-01 4 48487158 48487158 A C SLC10A4 Missense_Mutation p.K267T 0.36 deleterious(0) probably_damaging(0.995) TCGA-MH-A55Z-01 4 57182735 57182735 G A KIAA1211 Missense_Mutation p.E1023K 0.28 tolerated(0.06) possibly_damaging(0.486) TCGA-MH-A55Z-01 4 75695357 75695357 A C BTC Missense_Mutation p.I25S 0.36 tolerated(0.11) benign(0.439) TCGA-MH-A55Z-01 4 882734 882734 T A GAK Missense_Mutation p.Q369L 0.45 deleterious(0.05) benign(0.231) TCGA-MH-A55Z-01 5 137507060 137507060 C T BRD8 Missense_Mutation p.E76K 0.11 deleterious(0) probably_damaging(0.998) TCGA-MH-A55Z-01 5 138718252 138718252 G A SLC23A1 Missense_Mutation p.P27S 0.45 tolerated(0.74) benign(0.001) TCGA-MH-A55Z-01 5 169680134 169680134 C T LCP2 Missense_Mutation p.A412T 0.31 tolerated(0.58) benign(0.014) TCGA-MH-A55Z-01 5 178553061 178553061 G T ADAMTS2 Silent p.A896A 0.35 TCGA-MH-A55Z-01 5 72183032 72183032 T G TNPO1 Nonsense_Mutation p.L429* 0.13 TCGA-MH-A55Z-01 6 151790234 151790234 G A C6orf211 Missense_Mutation p.G439S 0.37 tolerated(0.22) benign(0.1) TCGA-MH-A55Z-01 6 28359289 28359289 C G ZSCAN12 Missense_Mutation p.D260H 0.36 tolerated(0.23) benign(0.207) TCGA-MH-A55Z-01 6 31625921 31625921 G - APOM 3'UTR 0.22 TCGA-MH-A55Z-01 6 33172821 33172821 C T HSD17B8 Silent p.P65P 0.19 TCGA-MH-A55Z-01 7 26224635 26224636 CT - NFE2L3 Frame_Shift_Del p.S440Cfs*3 0.22 TCGA-MH-A55Z-01 7 26729973 26729973 C G SKAP2 Missense_Mutation p.E269Q 0.21 tolerated(0.31) possibly_damaging(0.536) TCGA-MH-A55Z-01 7 30094389 30094389 T C PLEKHA8 Silent p.T287T 0.40 TCGA-MH-A55Z-01 7 44054300 44054300 C A SPDYE1 3'Flank 0.19 TCGA-MH-A55Z-01 7 44114102 44114102 G A POLM Missense_Mutation p.T288I 0.32 tolerated(0.07) benign(0.024) TCGA-MH-A55Z-01 7 44735721 44735721 G T OGDH Missense_Mutation p.W589L 0.23 deleterious(0) probably_damaging(0.995) TCGA-MH-A55Z-01 7 44735723 44735723 C A OGDH Missense_Mutation p.P590T 0.22 tolerated(0.23) probably_damaging(0.999) TCGA-MH-A55Z-01 7 50660660 50660660 C T GRB10 Missense_Mutation p.V592M 0.23 deleterious(0.03) benign(0.231) TCGA-MH-A55Z-01 7 76139887 76139887 C G UPK3B 5'UTR 0.18 TCGA-MH-A55Z-01 8 104444950 104444950 G T DCAF13 Missense_Mutation p.A408S 0.27 tolerated(0.08) benign(0.187) TCGA-MH-A55Z-01 8 144902839 144902839 T C PUF60 Silent p.Q115Q 0.44 TCGA-MH-A55Z-01 8 68107797 68107797 C T CSPP1 Missense_Mutation p.T1212I 0.32 tolerated(0.06) possibly_damaging(0.452) TCGA-MH-A55Z-01 9 130674630 130674630 G A ST6GALNAC4 Silent p.Y176Y 0.05 TCGA-MH-A55Z-01 9 132377793 132377793 T C C9orf50 Missense_Mutation p.T284A 0.30 tolerated(1) benign(0) TCGA-MH-A55Z-01 9 2643309 2643310 - GCA VLDLR In_Frame_Ins p.S201dup 0.41 TCGA-MH-A55Z-01 9 35102144 35102144 C G STOML2 Missense_Mutation p.Q77H 0.39 tolerated(0.77) probably_damaging(0.968) TCGA-MH-A55Z-01 9 38397069 38397069 T C ALDH1B1 Missense_Mutation p.Y442H 0.36 deleterious(0) probably_damaging(0.998) TCGA-MH-A55Z-01 X 1719998 1719998 C T AKAP17A Silent p.P533P 0.06 TCGA-MH-A55Z-01 X 55479560 55479560 T - MAGEH1 3'UTR 0.47 TCGA-MH-A55Z-01 X 78010716 78010716 C A LPAR4 Missense_Mutation p.A117E 0.84 deleterious(0.01) probably_damaging(0.937) TCGA-MH-A560-01 10 100481443 100481443 C T HPSE2 Silent p.P309P 0.12 TCGA-MH-A560-01 10 101090079 101090079 C T CNNM1 Missense_Mutation p.T312I 0.40 tolerated(0.13) benign(0.026) TCGA-MH-A560-01 10 104123472 104123472 A - GBF1 Frame_Shift_Del p.K675Sfs*19 0.24 TCGA-MH-A560-01 10 118423600 118423600 G T C10orf82 3'UTR 0.19 TCGA-MH-A560-01 10 12139749 12139749 G C DHTKD1 Missense_Mutation p.E475D 0.43 tolerated(0.24) benign(0.02) TCGA-MH-A560-01 10 124800167 124800167 G A ACADSB Silent p.L163L 0.26 TCGA-MH-A560-01 10 70182074 70182074 C T DNA2 Missense_Mutation p.E955K 0.37 tolerated(0.16) possibly_damaging(0.543) TCGA-MH-A560-01 10 77542704 77542704 T A C10orf11 5'UTR 0.47 TCGA-MH-A560-01 10 8007636 8007636 G C TAF3 Missense_Mutation p.K721N 0.25 deleterious_low_confidence(0.01) benign(0.403) TCGA-MH-A560-01 11 103006543 103006543 A G DYNC2H1 Missense_Mutation p.K814E 0.51 benign(0.087) TCGA-MH-A560-01 11 111156468 111156468 A C C11orf53 Missense_Mutation p.S134R 0.28 deleterious(0) possibly_damaging(0.742) TCGA-MH-A560-01 11 67186592 67186592 G C CARNS1 Missense_Mutation p.G244R 0.58 tolerated(0.06) benign(0.22) TCGA-MH-A560-01 12 56474020 56474020 C T ERBB3 5'UTR 0.53 TCGA-MH-A560-01 12 6976718 6976718 C T TPI1 Silent p.L33L 0.07 TCGA-MH-A560-01 12 7802077 7802077 G A APOBEC1 3'UTR 0.28 TCGA-MH-A560-01 14 60921717 60921717 A T C14orf39 Splice_Site p.X501_splice 0.54 TCGA-MH-A560-01 17 29162089 29162089 T A ATAD5 Silent p.P330P 0.45 TCGA-MH-A560-01 17 38078866 38078866 G C ORMDL3 Missense_Mutation p.S133R 0.20 deleterious(0.04) possibly_damaging(0.503) TCGA-MH-A560-01 17 63923752 63923752 G A CEP112 Missense_Mutation p.S643L 0.12 deleterious(0) probably_damaging(0.936) TCGA-MH-A560-01 17 65110487 65110487 T G HELZ Missense_Mutation p.I1291L 0.64 tolerated_low_confidence(1) benign(0.001) TCGA-MH-A560-01 17 73831821 73831821 C T UNC13D Missense_Mutation p.G545D 0.04 tolerated(0.71) benign(0.002) TCGA-MH-A560-01 19 4171149 4171149 G T CREB3L3 Missense_Mutation p.A318S 0.38 tolerated(0.1) probably_damaging(0.994) TCGA-MH-A560-01 19 44739325 44739325 A T ZNF227 Nonsense_Mutation p.K248* 0.39 TCGA-MH-A560-01 19 52131213 52131213 T A SIGLEC5 Missense_Mutation p.T291S 0.39 tolerated(1) benign(0.07) TCGA-MH-A560-01 1 153740253 153740253 G T INTS3 Nonsense_Mutation p.E732* 0.34 TCGA-MH-A560-01 1 198678922 198678922 C T PTPRC Silent p.N380N 0.24 TCGA-MH-A560-01 1 202097357 202097357 C T GPR37L1 Silent p.L373L 0.06 TCGA-MH-A560-01 1 211449723 211449723 G C RCOR3 Missense_Mutation p.S160T 0.09 deleterious(0.03) probably_damaging(0.986) TCGA-MH-A560-01 1 214815375 214815375 G T CENPF Nonsense_Mutation p.E1232* 0.26 TCGA-MH-A560-01 1 223959597 223959597 C G CAPN2 Missense_Mutation p.R664G 0.28 tolerated(0.32) probably_damaging(0.962) TCGA-MH-A560-01 1 243419490 243419490 G A SDCCAG8 Silent p.P5P 0.06 TCGA-MH-A560-01 1 29557328 29557328 C T MECR Missense_Mutation p.A31T 0.64 tolerated(0.16) benign(0.002) TCGA-MH-A560-01 1 36475164 36475164 C T AGO3 Missense_Mutation p.A373V 0.39 deleterious(0.03) benign(0.382) TCGA-MH-A560-01 20 35219589 35219589 C A TGIF2 Missense_Mutation p.L157M 0.53 tolerated(0.26) possibly_damaging(0.687) TCGA-MH-A560-01 20 43052875 43052876 - C HNF4A Frame_Shift_Ins p.Q371Pfs*49 0.28 TCGA-MH-A560-01 22 24583996 24583996 C A SUSD2 Missense_Mutation p.S745Y 0.39 deleterious(0) probably_damaging(0.987) TCGA-MH-A560-01 22 37098581 37098581 G T CACNG2 Missense_Mutation p.T14N 0.36 deleterious(0) probably_damaging(0.997) TCGA-MH-A560-01 2 135621133 135621133 G A ACMSD Missense_Mutation p.G140R 0.06 deleterious(0) probably_damaging(0.999) TCGA-MH-A560-01 2 182774650 182774650 C G SSFA2 Missense_Mutation p.P480A 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-MH-A560-01 2 183792879 183792879 C T NCKAP1 Missense_Mutation p.G1055E 0.29 tolerated(0.7) benign(0.006) TCGA-MH-A560-01 2 74688599 74688599 C T MOGS Missense_Mutation p.E773K 0.30 tolerated(0.37) benign(0.004) TCGA-MH-A560-01 3 142030528 142030528 C T XRN1 Missense_Mutation p.S1649N 0.09 tolerated_low_confidence(0.43) benign(0.001) TCGA-MH-A560-01 3 170141043 170141043 C T CLDN11 Missense_Mutation p.R107W 0.08 deleterious(0) probably_damaging(0.949) TCGA-MH-A560-01 3 179082985 179082985 C G MFN1 Missense_Mutation p.S242C 0.76 deleterious(0.02) benign(0.043) TCGA-MH-A560-01 3 19554559 19554559 C T KCNH8 Missense_Mutation p.S726F 0.05 deleterious(0.03) benign(0.303) TCGA-MH-A560-01 3 36874430 36874430 C T TRANK1 Missense_Mutation p.R2171H 0.50 deleterious(0) probably_damaging(0.945) TCGA-MH-A560-01 3 52439274 52439275 GC A BAP1 Frame_Shift_Del p.A323Sfs*12 0.46 TCGA-MH-A560-01 3 99514774 99514774 G A COL8A1 Missense_Mutation p.A677T 0.72 deleterious(0) probably_damaging(0.997) TCGA-MH-A560-01 4 155526043 155526043 T C FGG Silent p.R435R 0.39 TCGA-MH-A560-01 5 140537085 140537085 C T PCDHB17 Silent p.S503S 0.32 TCGA-MH-A560-01 5 19612631 19612631 C T CDH18 Missense_Mutation p.M241I 0.03 deleterious(0) probably_damaging(0.968) TCGA-MH-A560-01 5 34004755 34004755 A G AMACR Missense_Mutation p.M159T 0.37 tolerated(0.3) benign(0.02) TCGA-MH-A560-01 5 64867921 64867921 C - PPWD1 Frame_Shift_Del p.N262Mfs*2 0.17 TCGA-MH-A560-01 6 32052212 32052212 C T TNXB Silent p.P1141P 0.35 TCGA-MH-A560-01 7 100352929 100352929 C G ZAN Missense_Mutation p.L1069V 0.37 unknown(0) TCGA-MH-A560-01 7 111161447 111161447 G A IMMP2L Silent p.F19F 0.28 TCGA-MH-A560-01 7 11675888 11675888 G A THSD7A Silent p.R297R 0.44 TCGA-MH-A560-01 7 141365048 141365048 A T KIAA1147 Silent p.P297P 0.33 TCGA-MH-A560-01 7 148496376 148496376 G A CUL1 Missense_Mutation p.V716M 0.37 deleterious(0.02) possibly_damaging(0.701) TCGA-MH-A560-01 7 148638645 148638645 T C RNY5 RNA 0.35 TCGA-MH-A560-01 8 144522452 144522452 G T ZC3H3 Silent p.P858P 0.48 TCGA-MH-A560-01 8 6783427 6783427 G A DEFA6 Missense_Mutation p.A44V 0.38 deleterious(0.03) benign(0.109) TCGA-MH-A560-01 8 8655002 8655002 C A MFHAS1 Splice_Site p.X1000_splice 0.39 TCGA-MH-A560-01 9 135163729 135163729 A G SETX Missense_Mutation p.L2073S 0.38 tolerated(0.23) probably_damaging(0.934) TCGA-MH-A560-01 X 118284349 118284349 T A KIAA1210 Missense_Mutation p.E65V 0.05 deleterious_low_confidence(0.02) benign(0.184) TCGA-MH-A560-01 X 21659664 21659664 G A CNKSR2 Intron 0.84 TCGA-MH-A560-01 X 34148936 34148936 C T FAM47A Missense_Mutation p.R487Q 0.05 tolerated(0.38) possibly_damaging(0.572) TCGA-MH-A561-01 10 135209749 135209750 - GC RP11-108K14.8 Frame_Shift_Ins p.A93Rfs*14 0.32 TCGA-MH-A561-01 10 5038014 5038014 A - AKR1C2 Frame_Shift_Del p.F205Sfs*50 0.10 TCGA-MH-A561-01 10 7822115 7822115 C G KIN Missense_Mutation p.V94L 0.38 deleterious(0.01) benign(0.408) TCGA-MH-A561-01 10 97170380 97170388 CCTCTCTTA - SORBS1 Splice_Site p.X319_splice 0.38 TCGA-MH-A561-01 10 97366458 97366458 G A ALDH18A1 3'UTR 0.60 TCGA-MH-A561-01 11 134063948 134063948 C T NCAPD3 Missense_Mutation p.R596Q 0.14 deleterious(0.03) probably_damaging(0.918) TCGA-MH-A561-01 11 14808189 14808189 A T PDE3B Missense_Mutation p.E412D 0.39 tolerated(0.93) benign(0.224) TCGA-MH-A561-01 11 2181135 2181135 G T INS Missense_Mutation p.Q94K 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-MH-A561-01 11 62677207 62677207 G A CHRM1 Missense_Mutation p.P456S 0.19 tolerated_low_confidence(0.17) possibly_damaging(0.641) TCGA-MH-A561-01 11 62677510 62677510 A T CHRM1 Missense_Mutation p.F355I 0.43 tolerated(0.53) benign(0.004) TCGA-MH-A561-01 11 65562811 65562811 G T OVOL1 Nonstop_Mutation p.*268Lext*59 0.11 TCGA-MH-A561-01 11 65562812 65562812 A T OVOL1 Nonstop_Mutation p.*268Cext*59 0.11 TCGA-MH-A561-01 11 67192178 67192178 C T CARNS1 3'UTR 0.56 TCGA-MH-A561-01 11 85409045 85409045 A C SYTL2 Missense_Mutation p.S1148R 0.11 deleterious(0.01) possibly_damaging(0.465) TCGA-MH-A561-01 12 120569801 120569801 C T GCN1L1 Missense_Mutation p.G2448E 0.16 probably_damaging(0.984) TCGA-MH-A561-01 12 32908454 32908454 G - YARS2 Frame_Shift_Del p.L119Wfs*28 0.28 TCGA-MH-A561-01 12 50745132 50745132 G T FAM186A Missense_Mutation p.S1828Y 0.48 tolerated(0.27) benign(0.246) TCGA-MH-A561-01 12 51758021 51758021 G C GALNT6 Silent p.P311P 0.36 TCGA-MH-A561-01 12 54422232 54422232 C A HOXC6 5'UTR 0.31 TCGA-MH-A561-01 13 113526110 113526110 T C ATP11A Missense_Mutation p.L1018P 0.41 deleterious(0) probably_damaging(0.926) TCGA-MH-A561-01 13 20277500 20277500 G A PSPC1 Missense_Mutation p.H463Y 0.09 tolerated(0.19) benign(0.062) TCGA-MH-A561-01 14 19378076 19378076 A G OR11H12 Missense_Mutation p.I161M 0.07 deleterious(0.04) benign(0.152) TCGA-MH-A561-01 14 23512587 23512587 C A PSMB11 3'UTR 0.38 TCGA-MH-A561-01 14 67291218 67291218 A C GPHN Missense_Mutation p.E76D 0.25 tolerated(0.29) benign(0.001) TCGA-MH-A561-01 14 86090401 86090401 A T FLRT2 3'UTR 0.14 TCGA-MH-A561-01 15 62211634 62211634 T C VPS13C Missense_Mutation p.T2498A 0.40 deleterious(0.01) benign(0.265) TCGA-MH-A561-01 15 84592737 84592737 G A ADAMTSL3 Missense_Mutation p.R690H 0.33 deleterious(0) probably_damaging(0.953) TCGA-MH-A561-01 16 1995508 1995508 C A RPL3L Missense_Mutation p.A387S 0.41 tolerated(0.12) benign(0.002) TCGA-MH-A561-01 16 23360139 23360139 C G SCNN1B Silent p.T73T 0.45 TCGA-MH-A561-01 16 24581493 24581493 A T RBBP6 Missense_Mutation p.E1161V 0.35 deleterious_low_confidence(0.02) unknown(0) TCGA-MH-A561-01 16 46781755 46781755 C A MYLK3 Missense_Mutation p.M117I 0.50 tolerated(0.15) possibly_damaging(0.451) TCGA-MH-A561-01 16 67910858 67910858 T G EDC4 Missense_Mutation p.L145W 0.42 deleterious(0) probably_damaging(0.982) TCGA-MH-A561-01 16 70301662 70301662 G A AARS Silent p.I374I 0.08 TCGA-MH-A561-01 17 18057182 18057182 C G MYO15A Missense_Mutation p.A2687G 0.24 unknown(0) TCGA-MH-A561-01 17 25932516 25932516 C T KSR1 Silent p.D442D 0.09 TCGA-MH-A561-01 17 39642555 39642560 TAAGCC - KRT36 3'UTR 0.31 TCGA-MH-A561-01 17 42449792 42449792 C T ITGA2B Splice_Site p.X1021_splice 0.23 TCGA-MH-A561-01 17 42744196 42744196 A T C17orf104 Missense_Mutation p.Q306L 0.32 deleterious(0.01) benign(0.359) TCGA-MH-A561-01 17 49067112 49067112 G T SPAG9 Silent p.V913V 0.21 TCGA-MH-A561-01 17 74729098 74729098 C A METTL23 Silent p.A41A 0.19 TCGA-MH-A561-01 17 79095314 79095314 G T AATK Missense_Mutation p.P808T 0.24 tolerated(0.29) benign(0.293) TCGA-MH-A561-01 19 15220001 15220001 A T SYDE1 Missense_Mutation p.S75C 0.33 deleterious(0) probably_damaging(0.94) TCGA-MH-A561-01 19 33077794 33077794 A - PDCD5 Frame_Shift_Del p.V99* 0.26 TCGA-MH-A561-01 19 35450211 35450211 T - ZNF792 Frame_Shift_Del p.N183Tfs*16 0.27 TCGA-MH-A561-01 19 38385244 38385244 G T WDR87 Missense_Mutation p.Q328K 0.09 possibly_damaging(0.831) TCGA-MH-A561-01 19 4501200 4501200 C T HDGFRP2 Intron 0.62 TCGA-MH-A561-01 19 45917218 45917218 T C ERCC1 Intron 0.41 TCGA-MH-A561-01 19 58452565 58452565 A - ZNF256 Frame_Shift_Del p.H537Qfs*83 0.21 TCGA-MH-A561-01 1 10068242 10068242 C G RBP7 Missense_Mutation p.I88M 0.10 deleterious(0) benign(0.276) TCGA-MH-A561-01 1 14108836 14108836 C T PRDM2 Missense_Mutation p.R1516W 0.38 unknown(0) TCGA-MH-A561-01 1 150238852 150238852 G A APH1A Intron 0.15 TCGA-MH-A561-01 1 154296801 154296801 G T AQP10 Missense_Mutation p.V251L 0.44 tolerated(0.58) benign(0.06) TCGA-MH-A561-01 1 16054269 16054269 T G PLEKHM2 Missense_Mutation p.S568A 0.29 tolerated_low_confidence(0.07) probably_damaging(0.995) TCGA-MH-A561-01 1 17033878 17033878 C T ESPNP RNA 0.19 TCGA-MH-A561-01 1 173772300 173772300 G TT CENPL Frame_Shift_Ins p.A301Efs*27 0.21 TCGA-MH-A561-01 1 175996826 175996826 T C RFWD2 Splice_Site p.X538_splice 0.42 TCGA-MH-A561-01 1 179959644 179959645 GA - CEP350 Frame_Shift_Del p.R42Tfs*3 0.16 TCGA-MH-A561-01 1 181003148 181003148 G T MR1 Missense_Mutation p.G2V 0.31 deleterious_low_confidence(0) benign(0.256) TCGA-MH-A561-01 1 201043744 201043744 G C CACNA1S Missense_Mutation p.I651M 0.33 deleterious(0) probably_damaging(0.993) TCGA-MH-A561-01 1 204101322 204101322 A T ETNK2 Missense_Mutation p.M384K 0.33 deleterious(0) possibly_damaging(0.68) TCGA-MH-A561-01 1 204101336 204101336 C T ETNK2 Silent p.A379A 0.37 TCGA-MH-A561-01 1 210006562 210006562 G T DIEXF Nonsense_Mutation p.E141* 0.32 TCGA-MH-A561-01 1 213168313 213168313 A T ANGEL2 3'UTR 0.50 TCGA-MH-A561-01 1 214820696 214820696 A T CENPF Missense_Mutation p.N2595Y 0.41 possibly_damaging(0.66) TCGA-MH-A561-01 1 23848337 23848337 G C E2F2 Missense_Mutation p.I190M 0.37 deleterious(0) probably_damaging(0.982) TCGA-MH-A561-01 1 36564106 36564106 A G COL8A2 Silent p.I392I 0.29 TCGA-MH-A561-01 1 43826814 43826814 G C CDC20 Missense_Mutation p.Q367H 0.39 deleterious(0.02) possibly_damaging(0.661) TCGA-MH-A561-01 1 44463203 44463203 C G SLC6A9 3'UTR 0.20 TCGA-MH-A561-01 1 46124748 46124748 A G GPBP1L1 Silent p.H4H 0.13 TCGA-MH-A561-01 1 48999847 48999847 A G AGBL4 Nonstop_Mutation p.*504Qext*27 0.12 TCGA-MH-A561-01 1 61824902 61824902 C A NFIA Missense_Mutation p.P346Q 0.31 deleterious(0.04) probably_damaging(0.975) TCGA-MH-A561-01 1 6610594 6610594 G A NOL9 Nonsense_Mutation p.Q160* 0.05 TCGA-MH-A561-01 1 93965136 93965136 T A FNBP1L Missense_Mutation p.L46M 0.44 deleterious(0.02) possibly_damaging(0.893) TCGA-MH-A561-01 20 309303 309303 T A SOX12 3'UTR 0.62 TCGA-MH-A561-01 20 44539886 44539886 C T PLTP Silent p.K35K 0.35 TCGA-MH-A561-01 20 57782069 57782069 A - ZNF831 Frame_Shift_Del p.K1329Sfs*13 0.29 TCGA-MH-A561-01 20 61574952 61574952 A G GID8 Missense_Mutation p.T141A 0.06 tolerated(0.58) benign(0.005) TCGA-MH-A561-01 21 15889252 15889252 T A SAMSN1 Missense_Mutation p.K148N 0.38 deleterious(0) probably_damaging(0.944) TCGA-MH-A561-01 21 45825794 45825794 C T TRPM2 Silent p.I888I 0.56 TCGA-MH-A561-01 21 46057901 46057901 C T KRTAP10-10 Silent p.S189S 0.43 TCGA-MH-A561-01 22 24836558 24836558 G T ADORA2A Missense_Mutation p.G114C 0.38 tolerated(0.05) possibly_damaging(0.844) TCGA-MH-A561-01 22 39262330 39262330 T G CBX6 Missense_Mutation p.S375R 0.31 deleterious(0) possibly_damaging(0.766) TCGA-MH-A561-01 2 110373074 110373074 C T SOWAHC Silent p.A336A 0.44 TCGA-MH-A561-01 2 136555630 136555630 T G LCT Silent p.R1649R 0.15 TCGA-MH-A561-01 2 170136009 170136009 T A LRP2 Nonsense_Mutation p.K480* 0.32 TCGA-MH-A561-01 2 171700591 171700591 G T GAD1 Missense_Mutation p.M225I 0.33 deleterious(0.04) possibly_damaging(0.591) TCGA-MH-A561-01 2 172930452 172930452 A G METAP1D Missense_Mutation p.N157D 0.32 deleterious(0.03) probably_damaging(1) TCGA-MH-A561-01 2 190927181 190927181 T C MSTN Missense_Mutation p.T48A 0.47 tolerated(0.59) benign(0.004) TCGA-MH-A561-01 2 200789854 200789854 G T C2orf69 Missense_Mutation p.A135S 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-MH-A561-01 2 234368926 234368926 G T DGKD Missense_Mutation p.M972I 0.38 tolerated(0.49) benign(0) TCGA-MH-A561-01 2 48040950 48040950 C T FBXO11 Missense_Mutation p.G688E 0.08 deleterious(0) probably_damaging(0.999) TCGA-MH-A561-01 2 69757189 69757189 G A AAK1 Silent p.F274F 0.34 TCGA-MH-A561-01 2 74668862 74668862 G T RTKN Silent p.R28R 0.35 TCGA-MH-A561-01 2 74755401 74755401 G T AUP1 Missense_Mutation p.F215L 0.37 deleterious(0) possibly_damaging(0.624) TCGA-MH-A561-01 3 151166796 151166796 C T IGSF10 Missense_Mutation p.G325R 0.39 deleterious(0.03) possibly_damaging(0.481) TCGA-MH-A561-01 3 18390936 18390936 T C SATB1 Missense_Mutation p.E705G 0.41 deleterious(0) probably_damaging(0.999) TCGA-MH-A561-01 3 37033483 37033483 C A EPM2AIP1 Missense_Mutation p.L362F 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-MH-A561-01 3 45637412 45637412 T G LIMD1 Missense_Mutation p.S347R 0.33 deleterious(0.02) benign(0.011) TCGA-MH-A561-01 3 52416419 52416419 T C DNAH1 Missense_Mutation p.L2630P 0.39 probably_damaging(0.976) TCGA-MH-A561-01 4 123185457 123185457 G A KIAA1109 Missense_Mutation p.V2398I 0.05 possibly_damaging(0.683) TCGA-MH-A561-01 4 13601745 13601745 G A BOD1L1 Missense_Mutation p.S2260L 0.12 probably_damaging(0.951) TCGA-MH-A561-01 4 153250883 153250883 G - FBXW7 Frame_Shift_Del p.R393Efs*2 0.28 TCGA-MH-A561-01 4 71588406 71588406 G T RUFY3 Missense_Mutation p.W39L 0.37 deleterious(0) probably_damaging(0.998) TCGA-MH-A561-01 4 94138031 94138031 A G GRID2 Missense_Mutation p.D311G 0.30 deleterious(0.03) benign(0.346) TCGA-MH-A561-01 5 140555907 140555907 T A PCDHB7 3'UTR 0.28 TCGA-MH-A561-01 5 140699374 140699374 T C TAF7 Missense_Mutation p.I80V 0.34 tolerated(0.58) benign(0.003) TCGA-MH-A561-01 6 102513771 102513771 T - GRIK2 Intron 0.26 TCGA-MH-A561-01 6 10398689 10398689 G C TFAP2A Missense_Mutation p.N425K 0.30 tolerated(0.25) benign(0) TCGA-MH-A561-01 6 114264645 114264645 A C HDAC2 Silent p.A416A 0.56 TCGA-MH-A561-01 6 17817447 17817447 C T KIF13A Missense_Mutation p.V602I 0.31 tolerated(0.75) possibly_damaging(0.566) TCGA-MH-A561-01 6 34825520 34825520 C T UHRF1BP1 Silent p.Y531Y 0.06 TCGA-MH-A561-01 6 57467120 57467120 G T PRIM2 3'UTR 0.04 TCGA-MH-A561-01 6 75861881 75861881 T C COL12A1 Silent p.A1267A 0.36 TCGA-MH-A561-01 6 75977367 75977367 T A TMEM30A Missense_Mutation p.K112M 0.36 deleterious(0.01) possibly_damaging(0.542) TCGA-MH-A561-01 6 91226399 91226401 GCC T MAP3K7 Splice_Site p.X547_splice 0.28 TCGA-MH-A561-01 7 104717538 104717538 G C KMT2E Missense_Mutation p.E299D 0.11 tolerated_low_confidence(0.07) benign(0.217) TCGA-MH-A561-01 7 107732109 107732120 CCTCGTAGAGAT - LAMB4 In_Frame_Del p.Y551_A555delinsS 0.25 TCGA-MH-A561-01 7 116423474 116423474 T C MET Missense_Mutation p.M1268T 0.33 deleterious(0) probably_damaging(0.999) TCGA-MH-A561-01 7 37053037 37053037 C T ELMO1 Missense_Mutation p.S435N 0.34 tolerated(0.19) benign(0.013) TCGA-MH-A561-01 7 4308420 4308420 C A SDK1 3'UTR 0.17 TCGA-MH-A561-01 8 113316994 113316994 G A CSMD3 Missense_Mutation p.P2741L 0.38 deleterious(0.02) benign(0.099) TCGA-MH-A561-01 8 12884874 12884874 T G KIAA1456 3'UTR 0.33 TCGA-MH-A561-01 8 133806739 133806739 A G PHF20L1 Missense_Mutation p.E56G 0.35 deleterious(0) probably_damaging(0.998) TCGA-MH-A561-01 8 32616873 32616873 A T NRG1 Missense_Mutation p.E332V 0.27 tolerated(0.07) probably_damaging(1) TCGA-MH-A561-01 8 41504065 41504065 G T NKX6-3 Missense_Mutation p.P104Q 0.60 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-MH-A561-01 8 71053580 71053580 G A NCOA2 Missense_Mutation p.P956L 0.18 tolerated(0.46) benign(0.064) TCGA-MH-A561-01 9 112219466 112219466 C - PTPN3 Frame_Shift_Del p.K93Sfs*3 0.23 TCGA-MH-A561-01 9 112705604 112705604 A G PALM2 Missense_Mutation p.T379A 0.14 tolerated(0.4) possibly_damaging(0.815) TCGA-MH-A561-01 9 130707096 130707096 G A FAM102A Silent p.I333I 0.55 TCGA-MH-A561-01 9 131749966 131749966 T C NUP188 Missense_Mutation p.I788T 0.32 deleterious(0) probably_damaging(0.932) TCGA-MH-A561-01 9 86900438 86900438 A T SLC28A3 Missense_Mutation p.F490Y 0.35 tolerated(0.08) possibly_damaging(0.708) TCGA-MH-A561-01 X 118151559 118151559 G A LONRF3 Missense_Mutation p.R729Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-MH-A561-01 X 118985467 118985467 C G UPF3B Missense_Mutation p.D121H 0.75 deleterious(0) probably_damaging(0.997) TCGA-MH-A561-01 X 53440302 53440302 C G SMC1A Silent p.A165A 0.78 TCGA-MH-A562-01 10 104865116 104865116 T C NT5C2 Intron 0.42 TCGA-MH-A562-01 10 126448991 126448991 A - METTL10 3'UTR 0.13 TCGA-MH-A562-01 10 33543118 33543118 G A NRP1 Silent p.F273F 0.11 TCGA-MH-A562-01 10 88419072 88419072 G A OPN4 Missense_Mutation p.G227E 0.38 deleterious(0) probably_damaging(1) TCGA-MH-A562-01 11 119185945 119185945 C T MCAM Silent p.A32A 0.10 TCGA-MH-A562-01 11 30034138 30034138 G A KCNA4 Missense_Mutation p.R30W 0.30 deleterious_low_confidence(0) unknown(0) TCGA-MH-A562-01 11 43350300 43350300 A T API5 Silent p.G328G 0.31 TCGA-MH-A562-01 11 64428553 64428553 A T NRXN2 Silent p.I619I 0.41 TCGA-MH-A562-01 11 94801641 94801641 A C SRSF8 3'UTR 0.29 TCGA-MH-A562-01 12 133197702 133197702 C T P2RX2 Missense_Mutation p.S297L 0.06 deleterious(0) possibly_damaging(0.687) TCGA-MH-A562-01 12 57861257 57861257 C A GLI1 Missense_Mutation p.Q352K 0.25 deleterious(0) probably_damaging(0.978) TCGA-MH-A562-01 13 21721601 21721601 A G SAP18 3'UTR 0.41 TCGA-MH-A562-01 13 77799567 77799567 T A MYCBP2 Intron 0.32 TCGA-MH-A562-01 13 79175599 79175599 C A POU4F1 Missense_Mutation p.C404F 0.29 deleterious(0) unknown(0) TCGA-MH-A562-01 14 69521317 69521317 T C DCAF5 Missense_Mutation p.T696A 0.31 deleterious_low_confidence(0.02) probably_damaging(0.97) TCGA-MH-A562-01 15 65684246 65684246 C G IGDCC4 Missense_Mutation p.K732N 0.35 deleterious(0.02) possibly_damaging(0.821) TCGA-MH-A562-01 15 65942809 65942809 A G SLC24A1 Silent p.G774G 0.31 TCGA-MH-A562-01 15 77472613 77472613 A T PEAK1 Silent p.T552T 0.31 TCGA-MH-A562-01 16 27374134 27374134 G A IL4R Silent p.T487T 0.35 TCGA-MH-A562-01 16 30970101 30970101 T C SETD1A Missense_Mutation p.W17R 0.29 probably_damaging(0.996) TCGA-MH-A562-01 16 51171349 51171349 A C SALL1 Missense_Mutation p.F1217V 0.25 deleterious(0) possibly_damaging(0.593) TCGA-MH-A562-01 16 67761787 67761787 G T RANBP10 Missense_Mutation p.P496H 0.30 tolerated(0.56) benign(0.002) TCGA-MH-A562-01 16 8953055 8953055 G A CARHSP1 Missense_Mutation p.P44L 0.35 tolerated(0.17) possibly_damaging(0.84) TCGA-MH-A562-01 16 89760632 89760632 C T CDK10 Silent p.I220I 0.41 TCGA-MH-A562-01 17 18880267 18880267 T A FAM83G Intron 0.55 TCGA-MH-A562-01 17 40880917 40880920 AGTA - EZH1 Frame_Shift_Del p.Y14Gfs*5 0.28 TCGA-MH-A562-01 17 42255640 42255640 C G ASB16 Missense_Mutation p.A415G 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-MH-A562-01 17 45916860 45916860 G A SCRN2 Missense_Mutation p.A169V 0.49 deleterious(0) probably_damaging(0.998) TCGA-MH-A562-01 17 47656051 47656051 C T NXPH3 Missense_Mutation p.R50W 0.60 deleterious(0.05) probably_damaging(0.949) TCGA-MH-A562-01 17 4877742 4877742 T G CAMTA2 Missense_Mutation p.M675L 0.47 tolerated(0.55) possibly_damaging(0.842) TCGA-MH-A562-01 17 62045582 62045582 C T SCN4A Silent p.K279K 0.25 TCGA-MH-A562-01 17 62045585 62045585 C T SCN4A Silent p.Q278Q 0.25 TCGA-MH-A562-01 19 15651480 15651480 C T CYP4F22 Silent p.A297A 0.21 TCGA-MH-A562-01 19 36210764 36210764 C A KMT2B Missense_Mutation p.T172N 0.37 benign(0.184) TCGA-MH-A562-01 19 37369726 37369751 TGTTTTTTTGTTTTTGTTTTTGTTTT - ZNF345 3'UTR 0.11 TCGA-MH-A562-01 19 39226166 39226166 G T CAPN12 Silent p.I534I 0.34 TCGA-MH-A562-01 19 43689069 43689069 C A PSG5 Nonsense_Mutation p.E99* 0.31 TCGA-MH-A562-01 19 54721052 54721052 G T LILRB3 Silent p.T603T 0.54 TCGA-MH-A562-01 1 110201466 110201466 C A GSTM4 Missense_Mutation p.L131I 0.32 tolerated(0.17) benign(0.031) TCGA-MH-A562-01 1 117120184 117120184 C G IGSF3 Missense_Mutation p.S1132T 0.36 tolerated(0.13) benign(0.032) TCGA-MH-A562-01 1 156824054 156824054 G A INSRR Missense_Mutation p.R43C 0.24 deleterious(0) possibly_damaging(0.591) TCGA-MH-A562-01 1 161069269 161069269 G A KLHDC9 Missense_Mutation p.G221R 0.29 deleterious(0.04) probably_damaging(1) TCGA-MH-A562-01 1 220311360 220311360 A G IARS2 Missense_Mutation p.N717S 0.07 tolerated(0.39) benign(0.003) TCGA-MH-A562-01 1 229771821 229771821 G A URB2 Silent p.Q487Q 0.47 TCGA-MH-A562-01 1 245018785 245018785 A G HNRNPU Missense_Mutation p.Y765H 0.38 tolerated(0.31) unknown(0) TCGA-MH-A562-01 1 40724033 40724033 G C ZMPSTE24 Silent p.V30V 0.33 TCGA-MH-A562-01 20 30253881 30253881 A G BCL2L1 Silent p.F191F 0.52 TCGA-MH-A562-01 21 28305272 28305272 C G ADAMTS5 Missense_Mutation p.C594S 0.30 deleterious(0) probably_damaging(0.999) TCGA-MH-A562-01 22 26761491 26761491 G A SEZ6L Missense_Mutation p.G918E 0.33 deleterious(0) probably_damaging(1) TCGA-MH-A562-01 2 17692220 17692220 T - RAD51AP2 Frame_Shift_Del p.S1111Vfs*37 0.15 TCGA-MH-A562-01 2 19552164 19552164 G A OSR1 Missense_Mutation p.H225Y 0.08 deleterious(0) benign(0.37) TCGA-MH-A562-01 2 210714187 210714187 T G UNC80 Missense_Mutation p.F1158C 0.35 possibly_damaging(0.614) TCGA-MH-A562-01 2 71368372 71368378 ATGTAGT - MPHOSPH10 Frame_Shift_Del p.V442Kfs*15 0.11 TCGA-MH-A562-01 3 101284160 101284160 T - TRMT10C Frame_Shift_Del p.L180Yfs*10 0.27 TCGA-MH-A562-01 3 127292425 127292425 G C TPRA1 Missense_Mutation p.P354R 0.32 deleterious(0) probably_damaging(0.998) TCGA-MH-A562-01 3 128292036 128292036 A C C3orf27 3'UTR 0.22 TCGA-MH-A562-01 3 180694140 180694140 A G FXR1 3'UTR 0.47 TCGA-MH-A562-01 3 195615329 195615329 T C TNK2 Missense_Mutation p.E107G 0.03 deleterious(0) probably_damaging(0.994) TCGA-MH-A562-01 3 48728866 48728866 A G IP6K2 Missense_Mutation p.Y160H 0.35 tolerated(0.07) benign(0.035) TCGA-MH-A562-01 3 98001882 98001882 A C OR5H2 Missense_Mutation p.I51L 0.35 deleterious(0.02) benign(0.117) TCGA-MH-A562-01 4 187627969 187627969 C T FAT1 Missense_Mutation p.D1005N 0.35 probably_damaging(0.971) TCGA-MH-A562-01 4 25676246 25676246 C G SLC34A2 Missense_Mutation p.L485V 0.38 tolerated(0.12) benign(0.192) TCGA-MH-A562-01 4 2883755 2883755 C A ADD1 Missense_Mutation p.A109D 0.40 deleterious(0) probably_damaging(0.994) TCGA-MH-A562-01 4 49032879 49032879 T G CWH43 Silent p.S470S 0.35 TCGA-MH-A562-01 4 82061797 82061797 A T PRKG2 Silent p.A478A 0.25 TCGA-MH-A562-01 4 982690 982690 A G SLC26A1 Silent p.S679S 0.25 TCGA-MH-A562-01 5 149631322 149631322 G A CAMK2A Silent p.G228G 0.27 TCGA-MH-A562-01 5 154255037 154255037 T C CNOT8 3'UTR 0.16 TCGA-MH-A562-01 5 157098771 157098771 T C C5orf52 Missense_Mutation p.V50A 0.37 tolerated(0.42) benign(0.01) TCGA-MH-A562-01 5 180338541 180338541 C T BTNL8 Silent p.N200N 0.32 TCGA-MH-A562-01 5 54635905 54635905 A G SKIV2L2 Missense_Mutation p.S195G 0.29 deleterious(0) possibly_damaging(0.897) TCGA-MH-A562-01 5 82815685 82815685 G A VCAN Silent p.L520L 0.33 TCGA-MH-A562-01 5 90671403 90671407 TCTTT - ARRDC3 Frame_Shift_Del p.E178Dfs*19 0.12 TCGA-MH-A562-01 5 98238644 98238644 C T CHD1 Missense_Mutation p.D133N 0.11 tolerated_low_confidence(0.51) possibly_damaging(0.555) TCGA-MH-A562-01 6 13283687 13283687 G C TBC1D7 Intron 0.37 TCGA-MH-A562-01 6 147648298 147648298 G C STXBP5 Missense_Mutation p.D656H 0.34 deleterious(0) probably_damaging(1) TCGA-MH-A562-01 6 29643249 29643249 T C ZFP57 Missense_Mutation p.H89R 0.41 tolerated(0.1) benign(0.019) TCGA-MH-A562-01 6 31657863 31657863 C T ABHD16A Missense_Mutation p.G317R 0.33 deleterious(0) probably_damaging(0.959) TCGA-MH-A562-01 7 134893687 134893687 C A WDR91 Missense_Mutation p.A123S 0.37 tolerated(0.39) benign(0.016) TCGA-MH-A562-01 7 45148886 45148886 C T TBRG4 Intron 0.29 TCGA-MH-A562-01 7 50742288 50742288 G A GRB10 Silent p.A69A 0.08 TCGA-MH-A562-01 8 77616434 77616434 G A ZFHX4 Silent p.G37G 0.31 TCGA-MH-A562-01 9 129600284 129600287 TAGG - ZBTB43 3'UTR 0.23 TCGA-MH-A562-01 9 70178096 70178096 A G FOXD4L5 5'UTR 0.09 TCGA-MH-A562-01 X 114880464 114880465 - A PLS3 Frame_Shift_Ins p.N446Kfs*2 0.39 TCGA-MH-A562-01 X 23411325 23411325 A G PTCHD1 Missense_Mutation p.I564V 0.21 tolerated(0.39) benign(0.28) TCGA-MH-A854-01 10 104126202 104126202 G A GBF1 Missense_Mutation p.R790H 0.18 deleterious(0) probably_damaging(1) TCGA-MH-A854-01 10 115922488 115922488 T G C10orf118 Silent p.V180V 0.37 TCGA-MH-A854-01 10 124923511 124923511 A T BUB3 3'UTR 0.19 TCGA-MH-A854-01 10 47000658 47000658 T A GPRIN2 3'UTR 0.33 TCGA-MH-A854-01 10 61718848 61718848 C A C10orf40 5'UTR 0.47 TCGA-MH-A854-01 10 61842390 61842390 G C ANK3 Missense_Mutation p.L1436V 0.41 probably_damaging(0.977) TCGA-MH-A854-01 10 71176031 71176031 C A TACR2 Nonsense_Mutation p.E17* 0.07 TCGA-MH-A854-01 10 8006138 8006138 A - TAF3 Frame_Shift_Del p.K223Rfs*41 0.31 TCGA-MH-A854-01 10 89474565 89474566 - T PAPSS2 Frame_Shift_Ins p.L196Ffs*6 0.22 TCGA-MH-A854-01 11 113669791 113669791 A C USP28 3'UTR 0.59 TCGA-MH-A854-01 11 26692739 26692739 T A SLC5A12 Silent p.G589G 0.42 TCGA-MH-A854-01 11 47446781 47446781 A G PSMC3 Missense_Mutation p.V59A 0.45 tolerated(0.45) benign(0.002) TCGA-MH-A854-01 11 57297707 57297707 C A TIMM10 Intron 0.47 TCGA-MH-A854-01 11 62388048 62388048 G A B3GAT3 Missense_Mutation p.R60W 0.33 deleterious(0) possibly_damaging(0.906) TCGA-MH-A854-01 11 6413368 6413368 A G SMPD1 Missense_Mutation p.E358G 0.13 tolerated(0.3) benign(0.287) TCGA-MH-A854-01 11 76371152 76371152 G A LRRC32 Silent p.V495V 0.62 TCGA-MH-A854-01 12 11546558 11546558 C G PRB2 Missense_Mutation p.G152R 0.12 deleterious(0.04) unknown(0) TCGA-MH-A854-01 12 121881963 121881963 C T KDM2B Missense_Mutation p.S768N 0.50 tolerated(0.44) benign(0.065) TCGA-MH-A854-01 12 123187139 123187139 G T HCAR2 Missense_Mutation p.T231N 0.22 tolerated(0.5) benign(0.002) TCGA-MH-A854-01 12 1993454 1993454 C T CACNA2D4 Missense_Mutation p.V436M 0.58 tolerated(0.26) benign(0.043) TCGA-MH-A854-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.66 deleterious(0) possibly_damaging(0.479) TCGA-MH-A854-01 12 52710705 52710705 C A KRT83 Missense_Mutation p.A285S 0.55 deleterious(0.03) benign(0.261) TCGA-MH-A854-01 12 6639960 6639960 C A NCAPD2 Missense_Mutation p.P1314Q 0.31 tolerated(0.07) benign(0.04) TCGA-MH-A854-01 12 6933104 6933104 C T GPR162 Missense_Mutation p.R14C 0.73 deleterious(0.03) possibly_damaging(0.689) TCGA-MH-A854-01 12 81102003 81102003 C - MYF6 Frame_Shift_Del p.K170Nfs*29 0.61 TCGA-MH-A854-01 13 111279816 111279816 G T CARKD Missense_Mutation p.E139D 0.40 tolerated(0.23) benign(0.03) TCGA-MH-A854-01 13 113633934 113633935 - C MCF2L Intron 0.21 TCGA-MH-A854-01 13 115089604 115089604 A G CHAMP1 Missense_Mutation p.K96R 0.40 deleterious(0.01) benign(0.011) TCGA-MH-A854-01 13 21370348 21370348 C G XPO4 Silent p.V888V 0.47 TCGA-MH-A854-01 13 37427774 37427774 C T SMAD9 Missense_Mutation p.E348K 0.42 deleterious(0.01) probably_damaging(0.988) TCGA-MH-A854-01 13 37596434 37596434 A G SUPT20H Intron 0.50 TCGA-MH-A854-01 13 51825756 51825756 C T FAM124A Missense_Mutation p.R121W 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-MH-A854-01 14 31355261 31355261 C A COCH Missense_Mutation p.A407D 0.07 deleterious(0) probably_damaging(0.92) TCGA-MH-A854-01 14 78021667 78021667 A G SPTLC2 Silent p.S384S 0.74 TCGA-MH-A854-01 15 57484401 57484401 C A TCF12 Missense_Mutation p.L146I 0.38 tolerated(0.08) benign(0.292) TCGA-MH-A854-01 16 14947361 14947361 T G NOMO1 Missense_Mutation p.F258C 0.33 deleterious(0.03) possibly_damaging(0.847) TCGA-MH-A854-01 16 1507707 1507707 C T CLCN7 Silent p.L242L 0.73 TCGA-MH-A854-01 16 2098730 2098730 T C TSC2 Silent p.F38F 0.23 TCGA-MH-A854-01 16 27480845 27480845 T C GTF3C1 Missense_Mutation p.D1614G 0.30 deleterious(0) possibly_damaging(0.791) TCGA-MH-A854-01 16 2814755 2814755 C T SRRM2 Missense_Mutation p.A1409V 0.23 unknown(0) TCGA-MH-A854-01 16 30456738 30456754 GCCGGCAGGCCGGCTTC T SEPHS2 Frame_Shift_Del p.E99Kfs*? 0.37 TCGA-MH-A854-01 16 30456753 30456754 TC - SEPHS2 Frame_Shift_Del p.E99Sfs*? 0.20 TCGA-MH-A854-01 16 56704825 56704826 - C MT1H Frame_Shift_Ins p.L39Pfs*37 0.32 TCGA-MH-A854-01 16 57496626 57496626 C G POLR2C 5'UTR 0.53 TCGA-MH-A854-01 16 79628512 79628512 G T MAF Intron 0.23 TCGA-MH-A854-01 17 17910829 17910829 T C LRRC48 Intron 0.45 TCGA-MH-A854-01 17 21320750 21320750 A C KCNJ12 3'UTR 0.17 TCGA-MH-A854-01 17 25910045 25910045 G T KSR1 Missense_Mutation p.Q161H 0.10 tolerated(0.79) benign(0.17) TCGA-MH-A854-01 17 25958261 25958261 A G LGALS9 5'UTR 0.36 TCGA-MH-A854-01 17 37762540 37762540 C A NEUROD2 Missense_Mutation p.G105W 0.38 deleterious(0) probably_damaging(0.998) TCGA-MH-A854-01 17 42288679 42288679 C A UBTF Silent p.V356V 0.33 TCGA-MH-A854-01 17 42750780 42750780 T G C17orf104 Missense_Mutation p.L835R 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-MH-A854-01 17 57917338 57917338 A G VMP1 3'UTR 0.33 TCGA-MH-A854-01 17 7317791 7317791 A C NLGN2 Missense_Mutation p.N213H 0.40 deleterious(0) probably_damaging(1) TCGA-MH-A854-01 18 43437989 43437989 A C EPG5 Missense_Mutation p.V2424G 0.24 deleterious(0) benign(0.06) TCGA-MH-A854-01 19 14090340 14090340 C G RFX1 Missense_Mutation p.Q251H 0.56 deleterious(0) probably_damaging(0.978) TCGA-MH-A854-01 19 17438617 17438617 G A ANO8 Silent p.L767L 0.38 TCGA-MH-A854-01 19 41774184 41774184 C T HNRNPUL1 Nonsense_Mutation p.Q118* 0.49 TCGA-MH-A854-01 19 44117767 44117767 A G SRRM5 Silent p.R498R 0.44 TCGA-MH-A854-01 19 47260096 47260096 C T FKRP Silent p.N463N 0.54 TCGA-MH-A854-01 19 48048491 48048491 A G ZNF541 Missense_Mutation p.V432A 0.50 tolerated(0.08) benign(0.013) TCGA-MH-A854-01 19 49136867 49136867 A G DBP Missense_Mutation p.V199A 0.35 deleterious(0.03) benign(0.024) TCGA-MH-A854-01 19 50920457 50920457 G A POLD1 Missense_Mutation p.R1050H 0.25 tolerated(0.08) probably_damaging(0.959) TCGA-MH-A854-01 19 57956719 57956719 A - ZNF749 Frame_Shift_Del p.K735Nfs*37 0.32 TCGA-MH-A854-01 19 9074934 9074934 G C MUC16 Missense_Mutation p.P4171R 0.35 unknown(0) TCGA-MH-A854-01 1 111957099 111957099 T C OVGP1 Missense_Mutation p.D675G 0.29 tolerated_low_confidence(0.12) benign(0) TCGA-MH-A854-01 1 112299304 112299304 C G DDX20 Missense_Mutation p.T113S 0.26 deleterious(0) probably_damaging(0.995) TCGA-MH-A854-01 1 11254919 11254919 T C ANGPTL7 Missense_Mutation p.W294R 0.08 deleterious(0) probably_damaging(1) TCGA-MH-A854-01 1 117504197 117504197 G A PTGFRN Missense_Mutation p.V516I 0.42 tolerated(0.07) possibly_damaging(0.509) TCGA-MH-A854-01 1 11808542 11808542 G A AGTRAP Missense_Mutation p.S80N 0.41 tolerated(0.68) benign(0.002) TCGA-MH-A854-01 1 150922934 150922934 A T SETDB1 Missense_Mutation p.R527S 0.41 tolerated(0.19) benign(0.024) TCGA-MH-A854-01 1 153580138 153580138 G C S100A16 Missense_Mutation p.L62V 0.37 tolerated(0.21) benign(0.226) TCGA-MH-A854-01 1 16254900 16254900 T C SPEN Missense_Mutation p.I722T 0.07 benign(0.002) TCGA-MH-A854-01 1 169454887 169454887 A G SLC19A2 Missense_Mutation p.Y40H 0.48 deleterious(0.02) possibly_damaging(0.861) TCGA-MH-A854-01 1 204118891 204118891 T C ETNK2 Missense_Mutation p.Y153C 0.31 deleterious(0) probably_damaging(0.994) TCGA-MH-A854-01 1 204118892 204118892 A G ETNK2 Missense_Mutation p.Y153H 0.32 deleterious(0) probably_damaging(0.994) TCGA-MH-A854-01 1 204408071 204408071 A T PIK3C2B Missense_Mutation p.Y1170N 0.23 deleterious(0) probably_damaging(0.966) TCGA-MH-A854-01 1 215807830 215807830 T G USH2A Missense_Mutation p.N5090H 0.39 benign(0.332) TCGA-MH-A854-01 1 21890580 21890580 C A ALPL Silent p.T173T 0.42 TCGA-MH-A854-01 1 226570809 226570809 C T PARP1 Missense_Mutation p.A363T 0.44 tolerated(0.43) benign(0) TCGA-MH-A854-01 1 228461691 228461691 C T OBSCN Silent p.S2161S 0.37 TCGA-MH-A854-01 1 27426783 27426783 C G SLC9A1 3'UTR 0.41 TCGA-MH-A854-01 1 35251894 35251894 G A GJB3 3'UTR 0.49 TCGA-MH-A854-01 1 43893320 43893320 T C SZT2 Missense_Mutation p.Y1183H 0.33 deleterious(0) possibly_damaging(0.654) TCGA-MH-A854-01 1 57409426 57409426 A T C8B Missense_Mutation p.Y393N 0.41 deleterious(0.05) possibly_damaging(0.681) TCGA-MH-A854-01 1 89409052 89409053 TT A CCBL2 Frame_Shift_Del p.K399Yfs*3 0.28 TCGA-MH-A854-01 1 91405923 91405923 C T ZNF644 Missense_Mutation p.E330K 0.30 deleterious(0.04) possibly_damaging(0.849) TCGA-MH-A854-01 20 3674962 3674962 G T SIGLEC1 Silent p.I1054I 0.67 TCGA-MH-A854-01 20 42935653 42935653 T A FITM2 Missense_Mutation p.H134L 0.29 tolerated(0.21) benign(0.005) TCGA-MH-A854-01 20 47568002 47568002 T G ARFGEF2 Missense_Mutation p.I140S 0.25 deleterious(0) possibly_damaging(0.665) TCGA-MH-A854-01 21 15746414 15746414 C T HSPA13 Missense_Mutation p.E314K 0.39 tolerated(0.33) benign(0.183) TCGA-MH-A854-01 21 36080328 36080329 AG - CLIC6 Frame_Shift_Del p.K524Nfs*25 0.32 TCGA-MH-A854-01 22 20749663 20749663 T C ZNF74 Silent p.N25N 0.44 TCGA-MH-A854-01 22 24480737 24480737 A T CABIN1 Missense_Mutation p.E1039V 0.47 deleterious(0) probably_damaging(0.917) TCGA-MH-A854-01 22 31487406 31487406 A C SMTN Missense_Mutation p.K466T 0.42 deleterious(0) probably_damaging(0.999) TCGA-MH-A854-01 22 38349786 38349786 G A POLR2F 5'UTR 0.43 TCGA-MH-A854-01 22 42474587 42474587 G A FAM109B 3'UTR 0.46 TCGA-MH-A854-01 2 11751041 11751041 A G GREB1 Missense_Mutation p.E965G 0.26 deleterious(0.01) possibly_damaging(0.627) TCGA-MH-A854-01 2 152417110 152417110 C A NEB Missense_Mutation p.S6437I 0.06 probably_damaging(1) TCGA-MH-A854-01 2 170936421 170936421 G A UBR3 Missense_Mutation p.C1766Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-MH-A854-01 2 202625787 202625787 A T ALS2 Silent p.A310A 0.44 TCGA-MH-A854-01 2 218925146 218925146 G T CXCR2P1 RNA 0.12 TCGA-MH-A854-01 2 219892351 219892351 C G CCDC108 Intron 0.39 TCGA-MH-A854-01 2 231973151 231973151 T C HTR2B 3'UTR 0.60 TCGA-MH-A854-01 2 233323432 233323432 G A ALPI Missense_Mutation p.R425Q 0.40 deleterious(0) possibly_damaging(0.831) TCGA-MH-A854-01 2 27873210 27873210 C A GPN1 3'UTR 0.50 TCGA-MH-A854-01 2 69207188 69207188 G A GKN1 Missense_Mutation p.M167I 0.56 tolerated(1) benign(0) TCGA-MH-A854-01 2 74682590 74682590 A T INO80B Missense_Mutation p.K39I 0.17 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-MH-A854-01 2 86709089 86709089 T G KDM3A Missense_Mutation p.I850S 0.40 tolerated(0.89) benign(0.002) TCGA-MH-A854-01 2 98375467 98375473 CTGTGAG - TMEM131 Frame_Shift_Del p.S1751Gfs*157 0.16 TCGA-MH-A854-01 3 100074091 100074091 T A NIT2 Silent p.A270A 0.29 TCGA-MH-A854-01 3 123038548 123038548 G A ADCY5 Silent p.T743T 0.31 TCGA-MH-A854-01 3 138665725 138665725 T C FOXL2 5'UTR 0.28 TCGA-MH-A854-01 3 179050906 179050906 C G ZNF639 Missense_Mutation p.S100C 0.23 deleterious(0.04) benign(0.103) TCGA-MH-A854-01 3 195251642 195251642 T C PPP1R2 Missense_Mutation p.M95V 0.34 tolerated(0.4) benign(0.001) TCGA-MH-A854-01 3 39226976 39226976 T G XIRP1 Missense_Mutation p.K1321Q 0.44 deleterious(0.01) benign(0.016) TCGA-MH-A854-01 3 44776822 44776822 G A ZNF501 3'UTR 0.40 TCGA-MH-A854-01 3 45988859 45988859 C G CXCR6 Missense_Mutation p.R296G 0.51 deleterious(0) probably_damaging(0.959) TCGA-MH-A854-01 3 50254733 50254733 G C SLC38A3 RNA 0.43 TCGA-MH-A854-01 3 50416403 50416403 C T CACNA2D2 Missense_Mutation p.V428M 0.37 deleterious(0.01) benign(0.424) TCGA-MH-A854-01 3 5215746 5215746 T C ARL8B Silent p.D139D 0.38 TCGA-MH-A854-01 3 52283389 52283389 A G PPM1M Intron 0.40 TCGA-MH-A854-01 3 52548199 52548199 C T STAB1 Silent p.S1172S 0.37 TCGA-MH-A854-01 3 69220963 69220963 G C FRMD4B 3'UTR 0.41 TCGA-MH-A854-01 4 2910285 2910285 A T ADD1 Missense_Mutation p.Q551L 0.40 deleterious(0) probably_damaging(0.996) TCGA-MH-A854-01 4 48037631 48037631 G A NIPAL1 Silent p.L225L 0.33 TCGA-MH-A854-01 4 55991405 55991405 G T KDR Missense_Mutation p.A19D 0.09 tolerated(0.06) benign(0.265) TCGA-MH-A854-01 4 66201790 66201790 A G EPHA5 Silent p.P904P 0.44 TCGA-MH-A854-01 4 8456486 8456486 T G TRMT44 Missense_Mutation p.I383M 0.42 deleterious(0) probably_damaging(0.99) TCGA-MH-A854-01 5 127624826 127624826 G T FBN2 Silent p.R2210R 0.10 TCGA-MH-A854-01 5 139193229 139193229 G T PSD2 Missense_Mutation p.S236I 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-MH-A854-01 5 148407090 148407090 C A SH3TC2 Missense_Mutation p.L735F 0.40 deleterious(0.02) probably_damaging(0.924) TCGA-MH-A854-01 5 179079446 179079446 G C AC136604.1 3'Flank 0.48 TCGA-MH-A854-01 5 179225417 179225417 C A MGAT4B Missense_Mutation p.K495N 0.45 tolerated(0.14) benign(0.306) TCGA-MH-A854-01 5 35955543 35955543 G T UGT3A1 Intron 0.54 TCGA-MH-A854-01 6 111680124 111680124 A G REV3L Missense_Mutation p.F2325L 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-MH-A854-01 6 117023282 117023282 T C KPNA5 Missense_Mutation p.L179P 0.38 deleterious(0) possibly_damaging(0.824) TCGA-MH-A854-01 6 117246661 117246661 T C RFX6 Missense_Mutation p.L575P 0.29 deleterious(0) probably_damaging(0.997) TCGA-MH-A854-01 6 131216219 131216219 T C EPB41L2 Missense_Mutation p.N426S 0.46 tolerated(0.66) probably_damaging(0.991) TCGA-MH-A854-01 6 133849906 133849906 T C EYA4 Missense_Mutation p.L628P 0.34 tolerated(0.05) probably_damaging(0.983) TCGA-MH-A854-01 6 155776915 155776915 A - NOX3 Frame_Shift_Del p.L7* 0.36 TCGA-MH-A854-01 6 160664620 160664620 T C SLC22A2 Silent p.S421S 0.48 TCGA-MH-A854-01 6 24687837 24687837 G A ACOT13 Intron 0.40 TCGA-MH-A854-01 6 30886640 30886640 C G VARS2 Missense_Mutation p.T371R 0.44 deleterious(0) probably_damaging(1) TCGA-MH-A854-01 6 36181792 36181792 A G BRPF3 Missense_Mutation p.K873R 0.42 tolerated(0.12) benign(0.055) TCGA-MH-A854-01 6 36259229 36259229 A G PNPLA1 Missense_Mutation p.Y113C 0.44 deleterious(0) probably_damaging(0.987) TCGA-MH-A854-01 6 43273798 43273798 T C CRIP3 Intron 0.47 TCGA-MH-A854-01 6 43403598 43403598 T C ABCC10 Missense_Mutation p.L573P 0.48 deleterious(0.01) benign(0) TCGA-MH-A854-01 6 84936099 84936099 A - KIAA1009 Frame_Shift_Del p.S5Pfs*5 0.31 TCGA-MH-A854-01 7 100238810 100238819 ACGCTGGTAG - TFR2 Frame_Shift_Del p.Y23Wfs*31 0.42 TCGA-MH-A854-01 7 100463464 100463464 C T SLC12A9 Missense_Mutation p.A661V 0.31 tolerated(0.58) benign(0.007) TCGA-MH-A854-01 7 103008247 103008247 A T PSMC2 Missense_Mutation p.N379Y 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-MH-A854-01 7 11581118 11581118 A G THSD7A Missense_Mutation p.C584R 0.44 deleterious(0) probably_damaging(0.926) TCGA-MH-A854-01 7 140218395 140218395 C T DENND2A 3'UTR 0.50 TCGA-MH-A854-01 7 157178258 157178258 G T DNAJB6 Missense_Mutation p.R215I 0.41 deleterious(0) unknown(0) TCGA-MH-A854-01 7 32527353 32527353 C T LSM5 Missense_Mutation p.G63R 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-MH-A854-01 7 72081820 72081820 A C TYW1B Missense_Mutation p.V167G 0.40 deleterious(0) probably_damaging(1) TCGA-MH-A854-01 7 82784425 82784425 G A PCLO Missense_Mutation p.P511L 0.33 possibly_damaging(0.851) TCGA-MH-A854-01 7 86808921 86808921 G C DMTF1 Missense_Mutation p.D194H 0.36 tolerated(0.08) probably_damaging(0.989) TCGA-MH-A854-01 7 87910335 87910335 A C STEAP4 Nonsense_Mutation p.Y348* 0.44 TCGA-MH-A854-01 8 104419932 104419932 G A SLC25A32 Missense_Mutation p.R79W 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-MH-A854-01 8 6590118 6590118 A - AGPAT5 Frame_Shift_Del p.N148Tfs*22 0.30 TCGA-MH-A854-01 8 81399773 81399773 T C ZBTB10 Missense_Mutation p.M243T 0.40 deleterious_low_confidence(0) benign(0.04) TCGA-MH-A854-01 9 110249965 110249965 G A KLF4 Missense_Mutation p.A237V 0.42 tolerated(0.45) benign(0.023) TCGA-MH-A854-01 9 137710604 137710604 C T COL5A1 Missense_Mutation p.P1445S 0.35 unknown(0) TCGA-MH-A854-01 9 14841562 14841562 C A FREM1 Missense_Mutation p.Q588H 0.08 deleterious(0) probably_damaging(0.999) TCGA-MH-A854-01 9 33447468 33447468 G A AQP3 Silent p.L21L 0.41 TCGA-MH-A854-01 9 94809499 94809499 C T SPTLC1 Missense_Mutation p.A346T 0.24 tolerated(0.28) probably_damaging(0.911) TCGA-MH-A854-01 X 117526785 117526785 G C WDR44 Missense_Mutation p.S126T 0.47 tolerated_low_confidence(0.3) benign(0.001) TCGA-MH-A854-01 X 117526809 117526809 A - WDR44 Frame_Shift_Del p.E134Dfs*2 0.31 TCGA-MH-A854-01 X 128924965 128924965 G A SASH3 Missense_Mutation p.S117N 0.30 tolerated(0.54) benign(0.003) TCGA-MH-A854-01 X 134022861 134022861 T A MOSPD1 3'UTR 0.40 TCGA-MH-A854-01 X 153770658 153770658 G T IKBKG Missense_Mutation p.W60C 0.47 tolerated_low_confidence(0.05) benign(0.094) TCGA-MH-A854-01 X 34148898 34148898 G A FAM47A Missense_Mutation p.R500W 0.37 tolerated(0.05) probably_damaging(0.953) TCGA-MH-A854-01 X 70355044 70355044 T G MED12 Missense_Mutation p.S1656A 0.39 benign(0.168) TCGA-MH-A855-01 10 88728205 88728205 G T ADIRF 5'UTR 0.32 TCGA-MH-A855-01 11 5067977 5067977 C G OR52J3 Silent p.A74A 0.15 TCGA-MH-A855-01 11 64033788 64033788 G A PLCB3 Missense_Mutation p.E1090K 0.27 deleterious(0.02) probably_damaging(1) TCGA-MH-A855-01 14 89029403 89029403 C T ZC3H14 5'UTR 0.23 TCGA-MH-A855-01 16 2814818 2814818 G T SRRM2 Missense_Mutation p.G1430V 0.05 unknown(0) TCGA-MH-A855-01 16 57957253 57957255 CAG - CNGB1 In_Frame_Del p.A522del 0.24 TCGA-MH-A855-01 17 34122300 34122300 C T MMP28 Missense_Mutation p.G28R 0.32 tolerated_low_confidence(0.39) benign(0.024) TCGA-MH-A855-01 17 41180663 41180663 A G RND2 Missense_Mutation p.H217R 0.16 tolerated(1) benign(0) TCGA-MH-A855-01 19 11134267 11134267 G A SMARCA4 Missense_Mutation p.R978Q 0.06 probably_damaging(0.992) TCGA-MH-A855-01 19 50436034 50436034 G T ATF5 Silent p.P178P 0.21 TCGA-MH-A855-01 19 51984784 51984784 C T CEACAM18 Missense_Mutation p.R241W 0.11 deleterious(0) probably_damaging(0.965) TCGA-MH-A855-01 19 58928550 58928550 C A ZNF584 Missense_Mutation p.A222D 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-MH-A855-01 1 10435400 10435400 G C KIF1B Missense_Mutation p.A1747P 0.23 deleterious(0) probably_damaging(0.996) TCGA-MH-A855-01 1 151023078 151023078 T A C1orf56 3'UTR 0.07 TCGA-MH-A855-01 1 155785662 155785662 T A GON4L Missense_Mutation p.E365D 0.24 tolerated(0.08) benign(0.388) TCGA-MH-A855-01 1 26759444 26759444 G T DHDDS Missense_Mutation p.W3L 0.31 deleterious(0) possibly_damaging(0.903) TCGA-MH-A855-01 20 18529410 18529410 C T SEC23B Missense_Mutation p.P634L 0.25 deleterious(0) probably_damaging(0.983) TCGA-MH-A855-01 20 45878117 45878117 A C ZMYND8 Missense_Mutation p.V563G 0.30 deleterious_low_confidence(0) benign(0.096) TCGA-MH-A855-01 20 62196757 62196757 C T HELZ2 Missense_Mutation p.E1140K 0.38 deleterious(0.02) benign(0.356) TCGA-MH-A855-01 22 44064754 44064754 C G EFCAB6 Missense_Mutation p.E604D 0.23 tolerated(0.1) benign(0.023) TCGA-MH-A855-01 2 101581329 101581329 T C NPAS2 Missense_Mutation p.C242R 0.11 deleterious(0) probably_damaging(0.999) TCGA-MH-A855-01 2 152695640 152695640 C G CACNB4 Missense_Mutation p.R519T 0.30 deleterious_low_confidence(0) possibly_damaging(0.529) TCGA-MH-A855-01 2 185800904 185800904 C T ZNF804A Nonsense_Mutation p.Q261* 0.04 TCGA-MH-A855-01 2 207457453 207457453 G C ADAM23 Missense_Mutation p.D691H 0.05 deleterious(0.05) benign(0.166) TCGA-MH-A855-01 2 5834269 5834269 G A SOX11 3'UTR 0.14 TCGA-MH-A855-01 2 86693629 86693629 A G KDM3A Missense_Mutation p.K381R 0.30 tolerated_low_confidence(0.1) benign(0.001) TCGA-MH-A855-01 3 102171980 102171980 G A ZPLD1 Silent p.L124L 0.17 TCGA-MH-A855-01 3 172232753 172232753 A G TNFSF10 Silent p.C56C 0.24 TCGA-MH-A855-01 3 180379790 180379790 A G CCDC39 Silent p.L72L 0.21 TCGA-MH-A855-01 3 184099117 184099117 A G CHRD Missense_Mutation p.Q116R 0.25 deleterious(0.01) benign(0.243) TCGA-MH-A855-01 4 436272 436272 T A ZNF721 Missense_Mutation p.I662F 0.27 deleterious(0) possibly_damaging(0.799) TCGA-MH-A855-01 4 65175591 65175591 C A TECRL Missense_Mutation p.V204F 0.07 deleterious(0) probably_damaging(0.983) TCGA-MH-A855-01 4 8229358 8229358 A G SH3TC1 Missense_Mutation p.E646G 0.06 tolerated(0.14) benign(0.009) TCGA-MH-A855-01 5 115152191 115152191 G A CDO1 5'UTR 0.41 TCGA-MH-A855-01 5 914652 914652 A T TRIP13 Missense_Mutation p.N365Y 0.24 deleterious(0.02) benign(0.011) TCGA-MH-A855-01 6 28268788 28268788 C T PGBD1 Missense_Mutation p.P386L 0.26 deleterious(0) probably_damaging(0.997) TCGA-MH-A855-01 7 27140420 27140420 T A HOXA2 Silent p.V352V 0.26 TCGA-MH-A855-01 7 35006553 35006553 C T DPY19L1 Missense_Mutation p.G276R 0.06 deleterious(0) probably_damaging(0.934) TCGA-MH-A855-01 X 118809562 118809562 T C SEPT6 Missense_Mutation p.N34D 0.28 tolerated(0.1) benign(0.101) TCGA-MH-A856-01 10 100020789 100020789 C A LOXL4 Missense_Mutation p.E184D 0.41 tolerated(0.44) benign(0.005) TCGA-MH-A856-01 10 25464338 25464338 T A GPR158 5'UTR 0.30 TCGA-MH-A856-01 11 102220675 102220675 T G BIRC2 Missense_Mutation p.D30E 0.42 tolerated(0.09) benign(0.01) TCGA-MH-A856-01 11 111899513 111899513 T A DLAT Intron 0.35 TCGA-MH-A856-01 11 111899514 111899514 A T DLAT Splice_Site p.X169_splice 0.35 TCGA-MH-A856-01 11 128846491 128846491 C G ARHGAP32 Missense_Mutation p.E707Q 0.36 deleterious(0) possibly_damaging(0.543) TCGA-MH-A856-01 11 9450497 9450497 C G IPO7 Intron 0.45 TCGA-MH-A856-01 12 100774514 100774514 T - SLC17A8 Frame_Shift_Del p.I46Mfs*3 0.26 TCGA-MH-A856-01 12 110618356 110618356 G A IFT81 Missense_Mutation p.E440K 0.33 tolerated(0.16) benign(0.034) TCGA-MH-A856-01 12 110618362 110618362 A T IFT81 Missense_Mutation p.I442F 0.35 tolerated(0.11) benign(0.022) TCGA-MH-A856-01 12 52910546 52910546 G A KRT5 Silent p.A438A 0.33 TCGA-MH-A856-01 12 56536880 56536880 A G ESYT1 Missense_Mutation p.K1033E 0.47 deleterious(0) probably_damaging(0.984) TCGA-MH-A856-01 12 98993625 98993625 T C SLC25A3 Intron 0.25 TCGA-MH-A856-01 14 77580331 77580331 C T CIPC Silent p.S290S 0.43 TCGA-MH-A856-01 16 30731535 30731535 G A SRCAP Missense_Mutation p.R957Q 0.42 unknown(0) TCGA-MH-A856-01 16 3860645 3860645 T C CREBBP Missense_Mutation p.T312A 0.30 benign(0.014) TCGA-MH-A856-01 16 69170698 69170698 G A CIRH1A Missense_Mutation p.D87N 0.38 tolerated(0.28) benign(0.263) TCGA-MH-A856-01 16 841194 841194 T G CHTF18 Missense_Mutation p.L310V 0.35 deleterious(0) possibly_damaging(0.709) TCGA-MH-A856-01 16 84482189 84482189 C T ATP2C2 Silent p.R518R 0.30 TCGA-MH-A856-01 16 8890188 8890188 G A TMEM186 Missense_Mutation p.P88L 0.40 deleterious(0) probably_damaging(0.983) TCGA-MH-A856-01 17 27963648 27963648 A G SSH2 Missense_Mutation p.F507L 0.45 tolerated_low_confidence(0.24) benign(0.046) TCGA-MH-A856-01 17 36865775 36865775 G C MLLT6 Missense_Mutation p.E167Q 0.21 tolerated(0.05) unknown(0) TCGA-MH-A856-01 17 40054090 40054090 C T ACLY Silent p.T447T 0.42 TCGA-MH-A856-01 17 4841106 4841107 - G SLC25A11 Frame_Shift_Ins p.H292Pfs*37 0.30 TCGA-MH-A856-01 17 48683479 48683479 G C CACNA1G Intron 0.42 TCGA-MH-A856-01 17 60023815 60023815 C T MED13 3'UTR 0.41 TCGA-MH-A856-01 17 60023817 60023817 A T MED13 3'UTR 0.41 TCGA-MH-A856-01 18 20793942 20793942 A G CABLES1 Missense_Mutation p.I338V 0.40 tolerated(0.08) probably_damaging(0.919) TCGA-MH-A856-01 18 48325551 48325551 G - MRO 3'UTR 0.17 TCGA-MH-A856-01 18 66344101 66344101 T C TMX3 3'UTR 0.34 TCGA-MH-A856-01 19 1295670 1295670 C T EFNA2 Silent p.Y89Y 0.42 TCGA-MH-A856-01 19 13060221 13060221 A - RAD23A Frame_Shift_Del p.Q271Rfs*14 0.28 TCGA-MH-A856-01 19 1428952 1428953 GG - DAZAP1 Frame_Shift_Del p.G220Pfs*206 0.23 TCGA-MH-A856-01 19 19135925 19135925 G A SUGP2 Missense_Mutation p.A411V 0.07 tolerated(0.19) benign(0.2) TCGA-MH-A856-01 19 38903684 38903684 C T RASGRP4 Silent p.V474V 0.46 TCGA-MH-A856-01 19 42759153 42759153 C T AC006486.9 5'UTR 0.32 TCGA-MH-A856-01 19 5039997 5039997 T C KDM4B Missense_Mutation p.Y98H 0.45 benign(0.076) TCGA-MH-A856-01 19 8438718 8438718 T A ANGPTL4 Missense_Mutation p.L390Q 0.40 deleterious(0) probably_damaging(1) TCGA-MH-A856-01 1 114355044 114355044 G A RSBN1 5'UTR 0.40 TCGA-MH-A856-01 1 155823224 155823224 T G GON4L Silent p.I116I 0.33 TCGA-MH-A856-01 1 177245534 177245534 T C BRINP2 Missense_Mutation p.S326P 0.39 deleterious(0.03) benign(0.028) TCGA-MH-A856-01 1 227921688 227921688 C G JMJD4 Silent p.S204S 0.27 TCGA-MH-A856-01 1 229666004 229666004 A G ABCB10 Silent p.S529S 0.39 TCGA-MH-A856-01 1 32092534 32092534 A C HCRTR1 Missense_Mutation p.I411L 0.38 tolerated(0.93) benign(0.001) TCGA-MH-A856-01 1 32740672 32740672 G T LCK Missense_Mutation p.R89L 0.08 tolerated(0.18) benign(0.061) TCGA-MH-A856-01 1 35228238 35228238 A G GJB4 3'UTR 0.06 TCGA-MH-A856-01 1 35578803 35578803 A C ZMYM1 Missense_Mutation p.K458Q 0.38 deleterious(0.04) probably_damaging(0.93) TCGA-MH-A856-01 1 36028191 36028191 T C NCDN Missense_Mutation p.S448P 0.06 tolerated(0.22) benign(0.003) TCGA-MH-A856-01 1 42047342 42047343 - T HIVEP3 Frame_Shift_Ins p.C1043Mfs*16 0.23 TCGA-MH-A856-01 1 45797966 45797966 G C MUTYH Missense_Mutation p.L266V 0.21 deleterious(0.01) possibly_damaging(0.872) TCGA-MH-A856-01 1 53722944 53722944 A C LRP8 Missense_Mutation p.L801R 0.41 tolerated(0.55) benign(0.002) TCGA-MH-A856-01 1 77620232 77620232 T G PIGK Missense_Mutation p.K296N 0.39 tolerated(0.53) benign(0.005) TCGA-MH-A856-01 20 34288843 34288843 T A ROMO1 3'UTR 0.43 TCGA-MH-A856-01 20 35060886 35060886 A G DLGAP4 Missense_Mutation p.T256A 0.38 tolerated(1) benign(0) TCGA-MH-A856-01 22 36906990 36906990 C T EIF3D 3'UTR 0.07 TCGA-MH-A856-01 2 113480735 113480735 A C NT5DC4 Missense_Mutation p.N176T 0.25 deleterious(0) benign(0.108) TCGA-MH-A856-01 2 131097148 131097148 T G CCDC115 Intron 0.37 TCGA-MH-A856-01 2 133174849 133174849 G T GPR39 Silent p.S78S 0.28 TCGA-MH-A856-01 2 136467748 136467748 C G R3HDM1 Missense_Mutation p.H860D 0.35 tolerated(0.65) benign(0.009) TCGA-MH-A856-01 2 175330526 175330526 G T GPR155 Silent p.T457T 0.35 TCGA-MH-A856-01 2 191068207 191068207 T C C2orf88 3'UTR 0.44 TCGA-MH-A856-01 2 239155118 239155118 T A PER2 Silent p.P1222P 0.39 TCGA-MH-A856-01 2 241686666 241686666 T C KIF1A Missense_Mutation p.Q1017R 0.36 tolerated(0.09) benign(0.023) TCGA-MH-A856-01 2 85554384 85554384 C T TGOLN2 Silent p.E157E 0.39 TCGA-MH-A856-01 2 96262083 96262083 G A TRIM43 Missense_Mutation p.R214K 0.30 tolerated(1) benign(0.004) TCGA-MH-A856-01 2 99978275 99978275 C A EIF5B Missense_Mutation p.A304D 0.45 benign(0) TCGA-MH-A856-01 3 10018643 10018643 G A EMC3 Missense_Mutation p.T102I 0.53 deleterious(0.02) benign(0.365) TCGA-MH-A856-01 3 133118903 133118903 G T BFSP2 5'UTR 0.10 TCGA-MH-A856-01 3 186504962 186504962 T C EIF4A2 Missense_Mutation p.I273T 0.34 deleterious(0) possibly_damaging(0.756) TCGA-MH-A856-01 3 194366904 194366904 C G LSG1 Missense_Mutation p.D538H 0.44 deleterious(0) probably_damaging(0.962) TCGA-MH-A856-01 3 50222188 50222188 T - SEMA3F Frame_Shift_Del p.I466Mfs*58 0.24 TCGA-MH-A856-01 4 123236769 123236769 G A KIAA1109 Missense_Mutation p.D3489N 0.39 probably_damaging(0.995) TCGA-MH-A856-01 4 129793111 129793111 T A JADE1 Silent p.P741P 0.39 TCGA-MH-A856-01 4 25664375 25664375 A T SLC34A2 Missense_Mutation p.Y54F 0.29 tolerated(0.27) benign(0.009) TCGA-MH-A856-01 4 3418678 3418678 T G RGS12 Missense_Mutation p.F822L 0.33 deleterious(0) possibly_damaging(0.715) TCGA-MH-A856-01 4 55979601 55979601 C T KDR Silent p.G282G 0.39 TCGA-MH-A856-01 5 111594984 111594984 C T EPB41L4A Missense_Mutation p.R246Q 0.45 deleterious(0) possibly_damaging(0.757) TCGA-MH-A856-01 5 33441209 33441209 C A TARS Missense_Mutation p.A6D 0.46 tolerated_low_confidence(0.63) benign(0) TCGA-MH-A856-01 5 52396318 52396318 C - MOCS2 Frame_Shift_Del p.A142Pfs*10 0.24 TCGA-MH-A856-01 5 96079263 96079263 C T CAST Intron 0.41 TCGA-MH-A856-01 6 131903762 131903762 T - ARG1 Frame_Shift_Del p.D166Mfs*8 0.23 TCGA-MH-A856-01 6 29976456 29976456 G T ZNRD1-AS1 Intron 0.34 TCGA-MH-A856-01 6 30072974 30072974 T A TRIM31 Missense_Mutation p.K310I 0.34 tolerated(0.09) possibly_damaging(0.804) TCGA-MH-A856-01 6 33137181 33137181 A T COL11A2 Missense_Mutation p.D1173E 0.47 unknown(0) TCGA-MH-A856-01 6 41553179 41553179 A G FOXP4 Missense_Mutation p.Y145C 0.30 deleterious(0) probably_damaging(0.998) TCGA-MH-A856-01 6 43499248 43499248 G T XPO5 Missense_Mutation p.Q837K 0.37 tolerated(0.08) probably_damaging(0.998) TCGA-MH-A856-01 7 138486107 138486107 C A TMEM213 Missense_Mutation p.H40N 0.37 tolerated(0.14) benign(0.216) TCGA-MH-A856-01 7 140374550 140374550 T C ADCK2 Missense_Mutation p.V358A 0.49 tolerated(0.29) benign(0.02) TCGA-MH-A856-01 7 150029588 150029588 G A ZBED6CL 3'UTR 0.33 TCGA-MH-A856-01 7 26235474 26235474 T C HNRNPA2B1 Silent p.G250G 0.44 TCGA-MH-A856-01 7 45144021 45144021 G A TBRG4 Intron 0.29 TCGA-MH-A856-01 7 82072743 82072744 - A CACNA2D1 Frame_Shift_Ins p.T12Dfs*28 0.22 TCGA-MH-A856-01 7 86820330 86820330 T G DMTF1 Missense_Mutation p.F494C 0.35 deleterious(0) probably_damaging(0.994) TCGA-MH-A856-01 7 95951418 95951418 C A SLC25A13 5'UTR 0.37 TCGA-MH-A856-01 8 38092031 38092031 A G DDHD2 Missense_Mutation p.T114A 0.34 deleterious(0) benign(0.405) TCGA-MH-A856-01 8 39843128 39843128 T G IDO2 Intron 0.43 TCGA-MH-A856-01 8 72754774 72754774 G T MSC 3'UTR 0.36 TCGA-MH-A856-01 9 86322615 86322615 C T UBQLN1 5'UTR 0.09 TCGA-MH-A856-01 X 54475287 54475287 A T FGD1 Missense_Mutation p.S796R 0.18 tolerated(0.09) benign(0.034) TCGA-MH-A857-01 11 118377019 118377019 C - KMT2A Frame_Shift_Del p.Q3472Sfs*19 0.25 TCGA-MH-A857-01 11 45892006 45892008 ACC - CRY2 In_Frame_Del p.H513del 0.21 TCGA-MH-A857-01 11 94300728 94300728 G A PIWIL4 Missense_Mutation p.S15N 0.36 tolerated(0.25) benign(0.118) TCGA-MH-A857-01 12 22676361 22676361 C T C2CD5 Missense_Mutation p.E267K 0.28 tolerated(0.26) benign(0.082) TCGA-MH-A857-01 12 56817448 56817448 C T TIMELESS Silent p.E670E 0.07 TCGA-MH-A857-01 12 6933810 6933810 C T GPR162 Missense_Mutation p.A249V 0.08 tolerated(0.26) benign(0.022) TCGA-MH-A857-01 12 71286725 71286725 C T PTPRR Missense_Mutation p.A31T 0.32 tolerated_low_confidence(0.21) benign(0.002) TCGA-MH-A857-01 13 25428149 25428149 T G RNF17 Missense_Mutation p.F1159L 0.27 tolerated(0.68) benign(0) TCGA-MH-A857-01 14 89109293 89109293 C T EML5 Missense_Mutation p.G1394D 0.08 deleterious(0) probably_damaging(0.97) TCGA-MH-A857-01 15 57815687 57815687 G A CGNL1 Missense_Mutation p.G906R 0.32 tolerated(1) benign(0.001) TCGA-MH-A857-01 16 70333140 70333140 A G DDX19B 5'UTR 0.42 TCGA-MH-A857-01 17 14683344 14683344 G T AC005863.1 RNA 0.05 TCGA-MH-A857-01 18 43534423 43534423 T C EPG5 Silent p.T315T 0.33 TCGA-MH-A857-01 19 35802844 35802844 G A MAG Missense_Mutation p.S547N 0.43 tolerated(0.15) probably_damaging(0.922) TCGA-MH-A857-01 19 41630761 41630761 C T CYP2F1 Missense_Mutation p.P368S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-MH-A857-01 19 50156129 50156129 C A SCAF1 Missense_Mutation p.S828Y 0.36 unknown(0) TCGA-MH-A857-01 1 11174395 11174395 A T MTOR Missense_Mutation p.L2427Q 0.32 deleterious(0) probably_damaging(0.996) TCGA-MH-A857-01 1 145440062 145440064 AAG - TXNIP In_Frame_Del p.K167del 0.27 TCGA-MH-A857-01 1 16064468 16064468 G T SLC25A34 Silent p.V141V 0.33 TCGA-MH-A857-01 1 161697458 161697458 C T FCRLB 3'UTR 0.08 TCGA-MH-A857-01 1 228547456 228547466 GCAGGCCGGAG - OBSCN Intron 0.28 TCGA-MH-A857-01 1 235827769 235827769 C A LYST Missense_Mutation p.V3731L 0.33 deleterious(0) probably_damaging(0.978) TCGA-MH-A857-01 20 33329080 33329081 AA - NCOA6 Frame_Shift_Del p.F1660Yfs*56 0.28 TCGA-MH-A857-01 2 20885231 20885231 G T C2orf43 3'UTR 0.38 TCGA-MH-A857-01 2 233350910 233350910 C T ECEL1 Missense_Mutation p.A152T 0.10 tolerated(0.21) benign(0.032) TCGA-MH-A857-01 2 62449390 62449390 G A B3GNT2 Missense_Mutation p.G12D 0.31 tolerated(0.17) probably_damaging(0.927) TCGA-MH-A857-01 2 89442331 89442331 G T IGKV3-20 Missense_Mutation p.T25K 0.03 deleterious(0) possibly_damaging(0.858) TCGA-MH-A857-01 3 19947241 19947250 CCTGTGGAAA - EFHB Splice_Site p.X430_splice 0.24 TCGA-MH-A857-01 3 98512536 98512536 G T ST3GAL6 Silent p.V309V 0.29 TCGA-MH-A857-01 5 140236456 140236456 G T PCDHA10 Nonsense_Mutation p.E275* 0.40 TCGA-MH-A857-01 6 30594987 30594987 T C ATAT1 Silent p.L3L 0.38 TCGA-MH-A857-01 6 31085252 31085252 C T CDSN Missense_Mutation p.R47H 0.21 deleterious_low_confidence(0) unknown(0) TCGA-MH-A857-01 7 27170378 27170378 A G HOXA4 5'UTR 0.11 TCGA-MH-A857-01 7 44561797 44561797 G A NPC1L1 Silent p.F894F 0.37 TCGA-MH-A857-01 7 83037688 83037688 C T SEMA3E Silent p.L222L 0.23 TCGA-O9-A75Z-01 10 50668440 50668440 T C ERCC6 Silent p.T1347T 0.39 TCGA-O9-A75Z-01 11 122931977 122931977 C G HSPA8 Missense_Mutation p.G19A 0.55 tolerated_low_confidence(0.06) possibly_damaging(0.861) TCGA-O9-A75Z-01 12 14576874 14576874 A - ATF7IP Frame_Shift_Del p.V11Sfs*8 0.30 TCGA-O9-A75Z-01 12 7075646 7075646 A T PHB2 Missense_Mutation p.N269K 0.43 deleterious(0.01) probably_damaging(0.945) TCGA-O9-A75Z-01 14 52156560 52156561 - A FRMD6 Frame_Shift_Ins p.L4Ifs*5 0.31 TCGA-O9-A75Z-01 16 1798309 1798309 C A MAPK8IP3 Missense_Mutation p.D352E 0.07 tolerated(0.09) benign(0.142) TCGA-O9-A75Z-01 16 46763508 46763508 G A MYLK3 Missense_Mutation p.R554W 0.12 deleterious(0) probably_damaging(1) TCGA-O9-A75Z-01 16 56660835 56660835 G A MT1E Silent p.Q46Q 0.39 TCGA-O9-A75Z-01 17 1248733 1248734 - T YWHAE 3'UTR 0.31 TCGA-O9-A75Z-01 17 21731223 21731223 C T UBBP4 Intron 0.60 TCGA-O9-A75Z-01 18 31326448 31326448 A G ASXL3 Silent p.K2212K 0.05 TCGA-O9-A75Z-01 18 67614791 67614791 A G CD226 Intron 0.40 TCGA-O9-A75Z-01 19 31768683 31768683 G A TSHZ3 Silent p.S672S 0.44 TCGA-O9-A75Z-01 1 16918551 16918551 A T NBPF1 Intron 0.10 TCGA-O9-A75Z-01 1 16918552 16918552 C T NBPF1 Splice_Site 0.11 TCGA-O9-A75Z-01 1 196658606 196658606 C T CFH Missense_Mutation p.R341C 0.37 tolerated(0.06) benign(0.098) TCGA-O9-A75Z-01 1 44133641 44133641 G C KDM4A Missense_Mutation p.E372Q 0.33 tolerated(0.21) probably_damaging(0.968) TCGA-O9-A75Z-01 1 46032811 46032811 A G AKR1A1 Intron 0.25 TCGA-O9-A75Z-01 1 65775600 65775600 G A DNAJC6 Missense_Mutation p.A58T 0.44 tolerated(0.4) benign(0.016) TCGA-O9-A75Z-01 1 6705133 6705133 A G DNAJC11 Silent p.D316D 0.33 TCGA-O9-A75Z-01 20 62187129 62187129 G T C20orf195 Missense_Mutation p.W38L 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-O9-A75Z-01 21 45518268 45518268 C A TRAPPC10 Missense_Mutation p.P1067T 0.47 tolerated(0.08) probably_damaging(0.919) TCGA-O9-A75Z-01 22 24829586 24829586 G A ADORA2A Missense_Mutation p.A72T 0.10 tolerated(1) benign(0.028) TCGA-O9-A75Z-01 22 26348362 26348362 C G MYO18B Missense_Mutation p.F1981L 0.46 tolerated(0.15) possibly_damaging(0.879) TCGA-O9-A75Z-01 22 35782797 35782797 C T HMOX1 Silent p.A88A 0.42 TCGA-O9-A75Z-01 2 32474767 32474767 A G NLRC4 Silent p.S722S 0.41 TCGA-O9-A75Z-01 4 53728669 53728669 G T RASL11B 5'UTR 0.06 TCGA-O9-A75Z-01 5 107700635 107700635 A T FBXL17 Missense_Mutation p.I393N 0.42 deleterious(0) probably_damaging(0.984) TCGA-O9-A75Z-01 5 126154725 126154725 G T LMNB1 Missense_Mutation p.D351Y 0.36 deleterious(0.02) possibly_damaging(0.653) TCGA-O9-A75Z-01 5 140811391 140811391 G T PCDHGA12 Silent p.S355S 0.04 TCGA-O9-A75Z-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.08 TCGA-O9-A75Z-01 6 41557563 41557563 C - FOXP4 Frame_Shift_Del p.S375Rfs*10 0.35 TCGA-P4-A5E6-01 10 113920407 113920407 A T GPAM Missense_Mutation p.Y572N 0.43 deleterious(0) probably_damaging(0.999) TCGA-P4-A5E6-01 10 17278345 17278345 T G VIM Silent p.L442L 0.40 TCGA-P4-A5E6-01 10 24873742 24873742 C T ARHGAP21 Missense_Mutation p.G1826R 0.51 tolerated(0.07) benign(0.013) TCGA-P4-A5E6-01 10 48388918 48388918 G C RBP3 Missense_Mutation p.P654A 0.42 deleterious(0.01) possibly_damaging(0.539) TCGA-P4-A5E6-01 10 50681040 50681040 C T ERCC6 Missense_Mutation p.R915Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-P4-A5E6-01 10 53458361 53458361 C T CSTF2T Missense_Mutation p.G317R 0.20 deleterious(0) probably_damaging(0.998) TCGA-P4-A5E6-01 10 81037038 81037038 C G ZMIZ1 Silent p.P127P 0.09 TCGA-P4-A5E6-01 10 90342858 90342858 A C RNLS Silent p.L30L 0.33 TCGA-P4-A5E6-01 10 96121495 96121495 T C NOC3L Silent p.K48K 0.34 TCGA-P4-A5E6-01 11 118900152 118900152 G T SLC37A4 5'UTR 0.24 TCGA-P4-A5E6-01 11 129321185 129321185 T A BARX2 Missense_Mutation p.L243H 0.41 tolerated_low_confidence(0.4) possibly_damaging(0.617) TCGA-P4-A5E6-01 11 17633835 17633835 C T OTOG Missense_Mutation p.R2096W 0.09 probably_damaging(0.991) TCGA-P4-A5E6-01 11 20044643 20044644 - T NAV2 Intron 0.20 TCGA-P4-A5E6-01 11 27149016 27149016 A C BBOX1 3'UTR 0.42 TCGA-P4-A5E6-01 11 64681557 64681557 C A ATG2A Missense_Mutation p.E161D 0.35 tolerated(0.17) benign(0.101) TCGA-P4-A5E6-01 11 68707320 68707320 A T IGHMBP2 3'UTR 0.42 TCGA-P4-A5E6-01 11 71931920 71931920 C A FOLR2 Missense_Mutation p.P53T 0.34 deleterious(0) probably_damaging(0.972) TCGA-P4-A5E6-01 12 113715129 113715129 A C TPCN1 Missense_Mutation p.T454P 0.31 deleterious(0.04) probably_damaging(1) TCGA-P4-A5E6-01 12 57624649 57624649 C G SHMT2 Missense_Mutation p.Q33E 0.40 tolerated(1) benign(0.01) TCGA-P4-A5E6-01 12 94763803 94763804 - T CCDC41 Frame_Shift_Ins p.L315Tfs*2 0.25 TCGA-P4-A5E6-01 14 55604955 55604955 C T LGALS3 Missense_Mutation p.P71S 0.36 deleterious(0.03) unknown(0) TCGA-P4-A5E6-01 14 68268851 68268851 G T ZFYVE26 Silent p.L528L 0.38 TCGA-P4-A5E6-01 14 88478074 88478074 G A GPR65 Missense_Mutation p.E295K 0.06 deleterious(0) probably_damaging(0.979) TCGA-P4-A5E6-01 14 94733352 94733352 T A PPP4R4 Missense_Mutation p.V812E 0.31 deleterious_low_confidence(0.02) benign(0.068) TCGA-P4-A5E6-01 15 31818596 31818596 G A OTUD7A Silent p.S276S 0.25 TCGA-P4-A5E6-01 15 38988831 38988831 A C C15orf53 Missense_Mutation p.E8A 0.31 tolerated_low_confidence(0.05) benign(0.034) TCGA-P4-A5E6-01 15 52680095 52680095 A C MYO5A Missense_Mutation p.C561W 0.29 deleterious(0) probably_damaging(1) TCGA-P4-A5E6-01 15 52680096 52680096 C A MYO5A Missense_Mutation p.C561F 0.36 deleterious(0) probably_damaging(1) TCGA-P4-A5E6-01 15 92647568 92647568 C A SLCO3A1 Missense_Mutation p.L269M 0.35 deleterious(0) probably_damaging(0.959) TCGA-P4-A5E6-01 16 31414951 31414951 G A ITGAD Missense_Mutation p.G230D 0.38 deleterious(0) probably_damaging(0.99) TCGA-P4-A5E6-01 16 47622955 47622955 G A PHKB Missense_Mutation p.G337E 0.24 deleterious(0) probably_damaging(0.983) TCGA-P4-A5E6-01 16 53514563 53514563 G A RBL2 Missense_Mutation p.R989H 0.25 tolerated(0.07) benign(0.035) TCGA-P4-A5E6-01 16 707787 707787 C T WDR90 Silent p.P833P 0.31 TCGA-P4-A5E6-01 16 90075270 90075270 T A DBNDD1 Missense_Mutation p.T101S 0.24 deleterious(0) probably_damaging(0.997) TCGA-P4-A5E6-01 17 26971163 26971163 C A KIAA0100 Missense_Mutation p.K37N 0.33 tolerated(0.14) possibly_damaging(0.511) TCGA-P4-A5E6-01 17 40011371 40011371 T C KLHL11 Missense_Mutation p.R250G 0.53 tolerated(0.08) benign(0.363) TCGA-P4-A5E6-01 17 40269761 40269761 G C KAT2A Missense_Mutation p.P455A 0.40 deleterious(0.01) probably_damaging(0.912) TCGA-P4-A5E6-01 17 46005266 46005266 C T SP2 3'UTR 0.28 TCGA-P4-A5E6-01 17 47869395 47869395 G A KAT7 Missense_Mutation p.D55N 0.33 tolerated_low_confidence(0.21) benign(0.001) TCGA-P4-A5E6-01 17 5086862 5086862 C G ZNF594 Missense_Mutation p.Q230H 0.45 tolerated(0.06) probably_damaging(0.993) TCGA-P4-A5E6-01 17 7975982 7975982 G C ALOX12B 3'UTR 0.64 TCGA-P4-A5E6-01 18 29867165 29867165 A - GAREM Frame_Shift_Del p.Q466Sfs*7 0.28 TCGA-P4-A5E6-01 18 30092430 30092430 C T WBP11P1 RNA 0.58 TCGA-P4-A5E6-01 19 19758062 19758062 T C ATP13A1 Missense_Mutation p.N994S 0.18 deleterious(0) probably_damaging(0.983) TCGA-P4-A5E6-01 19 35506763 35506763 C T GRAMD1A Missense_Mutation p.R369C 0.41 deleterious(0) probably_damaging(0.953) TCGA-P4-A5E6-01 19 46305454 46305454 C G RSPH6A Missense_Mutation p.E574D 0.37 tolerated(0.11) possibly_damaging(0.524) TCGA-P4-A5E6-01 19 48183987 48183987 G T GLTSCR1 Silent p.L520L 0.39 TCGA-P4-A5E6-01 19 56047489 56047489 A C SBK2 Missense_Mutation p.V58G 0.28 deleterious(0) benign(0.307) TCGA-P4-A5E6-01 1 107599742 107599742 C T PRMT6 Silent p.V135V 0.36 TCGA-P4-A5E6-01 1 152384603 152384603 A G CRNN Missense_Mutation p.L36P 0.43 deleterious(0) probably_damaging(0.998) TCGA-P4-A5E6-01 1 153735733 153735733 A T INTS3 Missense_Mutation p.H554L 0.29 tolerated(0.57) benign(0.025) TCGA-P4-A5E6-01 1 155532204 155532204 A T ASH1L 5'UTR 0.31 TCGA-P4-A5E6-01 1 155903553 155903553 C G KIAA0907 Silent p.G42G 0.27 TCGA-P4-A5E6-01 1 156713547 156713547 C T HDGF Missense_Mutation p.G221S 0.53 tolerated_low_confidence(0.23) benign(0.003) TCGA-P4-A5E6-01 1 15855696 15855696 A C DNAJC16 Missense_Mutation p.R32S 0.36 tolerated(0.06) benign(0.065) TCGA-P4-A5E6-01 1 1720557 1720557 A C GNB1 Missense_Mutation p.L284R 0.46 deleterious(0) probably_damaging(0.995) TCGA-P4-A5E6-01 1 19500887 19500887 G T UBR4 Missense_Mutation p.L970M 0.27 probably_damaging(0.929) TCGA-P4-A5E6-01 1 201842054 201842054 A C IPO9 Missense_Mutation p.D892A 0.44 tolerated(0.11) benign(0.013) TCGA-P4-A5E6-01 1 207222409 207222409 C - YOD1 Frame_Shift_Del p.E335Nfs*22 0.24 TCGA-P4-A5E6-01 1 2116311 2116311 G - C1orf86 3'Flank 0.34 TCGA-P4-A5E6-01 1 214813548 214813548 A T CENPF Nonsense_Mutation p.K623* 0.42 TCGA-P4-A5E6-01 1 220154162 220154162 G C EPRS Missense_Mutation p.T1164S 0.39 deleterious(0.02) possibly_damaging(0.871) TCGA-P4-A5E6-01 1 22073615 22073615 A G USP48 Silent p.N312N 0.25 TCGA-P4-A5E6-01 1 223285316 223285316 C - TLR5 Frame_Shift_Del p.S353Ifs*10 0.31 TCGA-P4-A5E6-01 1 226924770 226924784 CTTCCTCTTGGCCTC - ITPKB In_Frame_Del p.E126_K130del 0.37 TCGA-P4-A5E6-01 1 248309355 248309355 G A OR2M5 Silent p.R302R 0.05 TCGA-P4-A5E6-01 1 29520638 29520638 G C MECR Missense_Mutation p.L340V 0.32 deleterious(0) possibly_damaging(0.785) TCGA-P4-A5E6-01 1 44083552 44083552 C T PTPRF Silent p.V1447V 0.34 TCGA-P4-A5E6-01 1 44087743 44087743 T C PTPRF 3'UTR 0.32 TCGA-P4-A5E6-01 1 44118814 44118814 G C KDM4A 5'UTR 0.26 TCGA-P4-A5E6-01 1 46033607 46033607 A T AKR1A1 Intron 0.37 TCGA-P4-A5E6-01 1 62271194 62271194 A G INADL Missense_Mutation p.M542V 0.34 tolerated(0.17) benign(0.403) TCGA-P4-A5E6-01 1 6631245 6631245 C T TAS1R1 Silent p.A156A 0.28 TCGA-P4-A5E6-01 1 7826621 7826621 G A CAMTA1 3'UTR 0.57 TCGA-P4-A5E6-01 1 93705010 93705043 TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT - CCDC18 Splice_Site p.X970_splice 0.15 TCGA-P4-A5E6-01 20 62378613 62378613 G T ZBTB46 Missense_Mutation p.S480R 0.40 deleterious(0.01) benign(0.026) TCGA-P4-A5E6-01 22 42912080 42912080 C A RRP7A Missense_Mutation p.K93N 0.41 deleterious(0) benign(0.012) TCGA-P4-A5E6-01 2 108488583 108488583 A G RGPD4 Missense_Mutation p.K1375E 0.76 deleterious(0) probably_damaging(0.997) TCGA-P4-A5E6-01 2 202900342 202900342 C G FZD7 Nonsense_Mutation p.Y324* 0.31 TCGA-P4-A5E6-01 2 210881324 210881324 G A RPE Missense_Mutation p.G146R 0.76 deleterious(0) probably_damaging(1) TCGA-P4-A5E6-01 2 225449678 225449679 GC T CUL3 Frame_Shift_Del p.M16Ifs*8 0.51 TCGA-P4-A5E6-01 2 70165384 70165384 C G MXD1 Missense_Mutation p.Q212E 0.07 deleterious_low_confidence(0.04) benign(0.047) TCGA-P4-A5E6-01 3 108174686 108174687 - T MYH15 Frame_Shift_Ins p.R740Kfs*16 0.21 TCGA-P4-A5E6-01 3 111710242 111710242 A C ABHD10 Missense_Mutation p.M199L 0.20 tolerated(0.24) benign(0.004) TCGA-P4-A5E6-01 3 14188804 14188804 G C XPC Missense_Mutation p.R864G 0.06 deleterious(0) probably_damaging(0.992) TCGA-P4-A5E6-01 3 15540254 15540254 G A COLQ Intron 0.31 TCGA-P4-A5E6-01 3 49568609 49568609 T C DAG1 Missense_Mutation p.L222P 0.39 tolerated(0.1) benign(0.003) TCGA-P4-A5E6-01 3 5024970 5024970 A C BHLHE40 Missense_Mutation p.I278L 0.40 deleterious(0.02) possibly_damaging(0.656) TCGA-P4-A5E6-01 3 50685441 50685441 C G MAPKAPK3 Silent p.G371G 0.42 TCGA-P4-A5E6-01 4 164392906 164392906 T C TKTL2 3'UTR 0.38 TCGA-P4-A5E6-01 5 102285295 102285295 C T PAM Missense_Mutation p.A233V 0.10 deleterious(0) probably_damaging(0.989) TCGA-P4-A5E6-01 5 126994090 126994090 T C CTXN3 3'UTR 0.47 TCGA-P4-A5E6-01 5 140788348 140788348 G T PCDHGB6 Missense_Mutation p.E193D 0.42 deleterious(0.02) probably_damaging(0.967) TCGA-P4-A5E6-01 5 147207646 147207646 G A SPINK1 Missense_Mutation p.P45S 0.20 deleterious(0) probably_damaging(0.999) TCGA-P4-A5E6-01 5 156770121 156770121 C A FNDC9 Nonsense_Mutation p.E142* 0.30 TCGA-P4-A5E6-01 5 160886718 160886718 T A GABRB2 Missense_Mutation p.N124Y 0.44 deleterious(0) probably_damaging(1) TCGA-P4-A5E6-01 5 90669948 90669948 A C ARRDC3 Missense_Mutation p.L339R 0.28 deleterious(0) possibly_damaging(0.825) TCGA-P4-A5E6-01 6 117203548 117203548 C - RFX6 Frame_Shift_Del p.L176Sfs*2 0.33 TCGA-P4-A5E6-01 6 24843494 24843494 C G FAM65B Missense_Mutation p.E506Q 0.33 tolerated(0.21) benign(0.009) TCGA-P4-A5E6-01 6 30459405 30459405 T C HLA-E Silent p.A326A 0.26 TCGA-P4-A5E6-01 6 32261299 32261299 T G C6orf10 Missense_Mutation p.K384T 0.39 deleterious(0) probably_damaging(0.991) TCGA-P4-A5E6-01 6 41751890 41751890 G A PRICKLE4 Missense_Mutation p.G52S 0.36 tolerated(0.18) probably_damaging(0.911) TCGA-P4-A5E6-01 6 90578032 90578032 G C CASP8AP2 RNA 0.47 TCGA-P4-A5E6-01 7 105903928 105903928 T G NAMPT Missense_Mutation p.E293D 0.08 tolerated(0.35) benign(0) TCGA-P4-A5E6-01 7 128494117 128494117 G C FLNC Missense_Mutation p.E2192Q 0.36 tolerated(0.29) benign(0) TCGA-P4-A5E6-01 7 129104562 129104562 C G STRIP2 Missense_Mutation p.L587V 0.37 deleterious(0.01) benign(0.232) TCGA-P4-A5E6-01 7 26224503 26224503 G T NFE2L3 Missense_Mutation p.M395I 0.36 deleterious(0.02) benign(0.235) TCGA-P4-A5E6-01 7 30066214 30066215 - A FKBP14 5'UTR 0.50 TCGA-P4-A5E6-01 7 75915309 75915309 A T SRRM3 3'UTR 0.28 TCGA-P4-A5E6-01 8 121357692 121357692 C T COL14A1 Missense_Mutation p.P1656L 0.41 deleterious(0) probably_damaging(1) TCGA-P4-A5E6-01 8 141557696 141557696 A G AGO2 Missense_Mutation p.L540P 0.35 deleterious(0) probably_damaging(0.997) TCGA-P4-A5E6-01 8 145113505 145113505 A C OPLAH Missense_Mutation p.V226G 0.28 deleterious(0) possibly_damaging(0.477) TCGA-P4-A5E6-01 9 103109141 103109141 C G TEX10 Missense_Mutation p.S243T 0.33 tolerated(0.3) benign(0.004) TCGA-P4-A5E6-01 9 139564703 139564703 G C EGFL7 Missense_Mutation p.W164C 0.28 tolerated(0.18) possibly_damaging(0.866) TCGA-P4-A5E6-01 9 139794876 139794876 C G TRAF2 Silent p.A90A 0.28 TCGA-P4-A5E6-01 9 77435298 77435298 C G TRPM6 Missense_Mutation p.Q352H 0.10 deleterious(0.01) probably_damaging(0.928) TCGA-P4-A5E6-01 9 86584208 86584209 - A HNRNPK 3'UTR 0.35 TCGA-P4-A5E6-01 X 101572233 101572235 GGC AG NXF2 Intron 0.23 TCGA-P4-A5E7-01 10 105928500 105928500 A T WDR96 Splice_Site p.X897_splice 0.15 TCGA-P4-A5E7-01 10 119043959 119043959 G T PDZD8 Missense_Mutation p.P762H 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-P4-A5E7-01 10 20335920 20335920 G T PLXDC2 Missense_Mutation p.L149F 0.09 deleterious(0) probably_damaging(0.992) TCGA-P4-A5E7-01 10 38406585 38406585 C T ZNF37A Missense_Mutation p.T169I 0.05 tolerated(0.07) benign(0.284) TCGA-P4-A5E7-01 10 70332130 70332130 T C TET1 Missense_Mutation p.L12S 0.32 tolerated(0.54) benign(0.047) TCGA-P4-A5E7-01 10 74692266 74692266 T G OIT3 Missense_Mutation p.I541S 0.23 deleterious(0) probably_damaging(0.912) TCGA-P4-A5E7-01 10 78651371 78651371 C G KCNMA1 Missense_Mutation p.G1068A 0.28 tolerated(0.06) possibly_damaging(0.751) TCGA-P4-A5E7-01 10 89717690 89717690 A G PTEN Missense_Mutation p.M239V 0.28 tolerated(0.5) benign(0.001) TCGA-P4-A5E7-01 11 1018068 1018068 G A MUC6 Missense_Mutation p.P1578L 0.21 unknown(0) TCGA-P4-A5E7-01 11 1267042 1267042 A G MUC5B Missense_Mutation p.S2978G 0.33 unknown(0) TCGA-P4-A5E7-01 11 18725910 18725910 C - TMEM86A 3'UTR 0.27 TCGA-P4-A5E7-01 11 62297916 62297916 T C AHNAK Missense_Mutation p.M1325V 0.36 possibly_damaging(0.511) TCGA-P4-A5E7-01 11 62334912 62334912 A C EEF1G Missense_Mutation p.L204W 0.33 deleterious(0) possibly_damaging(0.655) TCGA-P4-A5E7-01 11 62444061 62444061 C T UBXN1 3'UTR 0.39 TCGA-P4-A5E7-01 11 75509414 75509414 G C DGAT2 Missense_Mutation p.G318R 0.33 deleterious(0) probably_damaging(0.993) TCGA-P4-A5E7-01 12 10573086 10588522 12:10573086-10588522 - KLRC2 large deletion 0.17 TCGA-P4-A5E7-01 12 10588522 10588522 T - KLRC2 Frame_Shift_Del p.R22Gfs*20 0.20 TCGA-P4-A5E7-01 12 108035881 108035881 T G BTBD11 Missense_Mutation p.L952R 0.30 deleterious(0) probably_damaging(0.988) TCGA-P4-A5E7-01 12 119583229 119583229 C A SRRM4 Missense_Mutation p.A272D 0.26 tolerated_low_confidence(0.74) possibly_damaging(0.881) TCGA-P4-A5E7-01 12 31551284 31551284 C T DENND5B Silent p.G1027G 0.35 TCGA-P4-A5E7-01 12 53045499 53045499 G C KRT2 Missense_Mutation p.P143R 0.35 deleterious(0) unknown(0) TCGA-P4-A5E7-01 12 68696605 68696605 T A MDM1 Silent p.I589I 0.22 TCGA-P4-A5E7-01 12 91365768 91365768 T G EPYC Silent p.R171R 0.56 TCGA-P4-A5E7-01 13 110435965 110435965 G T IRS2 Silent p.A812A 0.28 TCGA-P4-A5E7-01 13 25265339 25265339 T C ATP12A Missense_Mutation p.I346T 0.36 deleterious(0) probably_damaging(0.995) TCGA-P4-A5E7-01 14 102606212 102606212 G A WDR20 5'Flank 0.40 TCGA-P4-A5E7-01 14 24734893 24734893 C T RABGGTA Silent p.P544P 0.34 TCGA-P4-A5E7-01 14 36143779 36143779 A C RALGAPA1 Silent p.P1081P 0.38 TCGA-P4-A5E7-01 14 76243163 76243163 A - TTLL5 Frame_Shift_Del p.N787Tfs*18 0.19 TCGA-P4-A5E7-01 15 24923342 24923342 C T NPAP1 Silent p.A776A 0.40 TCGA-P4-A5E7-01 15 33024167 33024167 A G GREM1 3'UTR 0.36 TCGA-P4-A5E7-01 15 65495764 65495764 C G CILP Missense_Mutation p.A322P 0.29 deleterious(0.04) possibly_damaging(0.643) TCGA-P4-A5E7-01 16 20851720 20851720 G - AC004381.6 Frame_Shift_Del p.A520Lfs*2 0.30 TCGA-P4-A5E7-01 16 3363138 3363138 T A ZNF75A Missense_Mutation p.D21E 0.48 tolerated(0.11) benign(0.097) TCGA-P4-A5E7-01 16 54319068 54319068 C T IRX3 Missense_Mutation p.G242D 0.28 tolerated(0.67) probably_damaging(0.931) TCGA-P4-A5E7-01 16 70380840 70380840 G T DDX19A 5'UTR 0.15 TCGA-P4-A5E7-01 16 88706510 88706510 A G IL17C 3'UTR 0.22 TCGA-P4-A5E7-01 16 88718848 88718848 G A MVD 3'UTR 0.31 TCGA-P4-A5E7-01 17 26731871 26731871 A C SLC46A1 Missense_Mutation p.F282V 0.19 tolerated(0.05) benign(0.238) TCGA-P4-A5E7-01 17 36478132 36478132 C T MRPL45 Missense_Mutation p.H262Y 0.52 deleterious(0) probably_damaging(1) TCGA-P4-A5E7-01 17 36492994 36492994 C T GPR179 Missense_Mutation p.S365N 0.16 deleterious(0.01) possibly_damaging(0.889) TCGA-P4-A5E7-01 17 56432236 56432236 G C RNF43 3'UTR 0.28 TCGA-P4-A5E7-01 17 7127679 7127679 T C ACADVL Silent p.L547L 0.46 TCGA-P4-A5E7-01 17 7405000 7405000 G A POLR2A Silent p.K767K 0.24 TCGA-P4-A5E7-01 17 78055491 78055491 C A CCDC40 Missense_Mutation p.T570N 0.24 deleterious(0.01) benign(0.065) TCGA-P4-A5E7-01 18 3273023 3273023 C G MYL12B Missense_Mutation p.Q43E 0.32 deleterious(0) possibly_damaging(0.453) TCGA-P4-A5E7-01 19 12874398 12874398 T - HOOK2 Frame_Shift_Del p.S652Afs*60 0.25 TCGA-P4-A5E7-01 19 16793291 16793291 G C TMEM38A Missense_Mutation p.E176Q 0.31 deleterious(0.04) probably_damaging(0.927) TCGA-P4-A5E7-01 19 17384931 17384931 T C BABAM1 Missense_Mutation p.S161P 0.45 deleterious(0) probably_damaging(0.995) TCGA-P4-A5E7-01 19 17767189 17767189 G T UNC13A Silent p.R262R 0.22 TCGA-P4-A5E7-01 19 19106027 19106027 C T SUGP2 Missense_Mutation p.M1018I 0.30 deleterious(0) possibly_damaging(0.51) TCGA-P4-A5E7-01 19 30018151 30018151 T C VSTM2B Missense_Mutation p.V39A 0.23 tolerated(0.46) possibly_damaging(0.848) TCGA-P4-A5E7-01 19 44030496 44030496 T A ETHE1 Missense_Mutation p.T78S 0.32 deleterious(0.02) probably_damaging(0.949) TCGA-P4-A5E7-01 19 44030497 44030497 A T ETHE1 Missense_Mutation p.N77K 0.32 deleterious(0) probably_damaging(1) TCGA-P4-A5E7-01 19 50411616 50411633 GTCCATGTGCGCATTGAG - NUP62 In_Frame_Del p.L478_D483del 0.26 TCGA-P4-A5E7-01 19 54401854 54401854 C - PRKCG Frame_Shift_Del p.Q419Sfs*15 0.21 TCGA-P4-A5E7-01 19 7917990 7917990 C G EVI5L Missense_Mutation p.P336A 0.36 deleterious(0) probably_damaging(0.997) TCGA-P4-A5E7-01 1 10328310 10328310 T C KIF1B Missense_Mutation p.S237P 0.24 deleterious(0.02) possibly_damaging(0.815) TCGA-P4-A5E7-01 1 115256491 115256491 T A NRAS Missense_Mutation p.T74S 0.39 tolerated(0.21) probably_damaging(0.916) TCGA-P4-A5E7-01 1 12378145 12378145 T - VPS13D Frame_Shift_Del p.S2389Pfs*5 0.19 TCGA-P4-A5E7-01 1 155723012 155723012 C G GON4L Missense_Mutation p.G1942A 0.29 tolerated_low_confidence(0.27) possibly_damaging(0.899) TCGA-P4-A5E7-01 1 156386616 156386616 C A C1orf61 Missense_Mutation p.D6Y 0.27 deleterious_low_confidence(0.01) probably_damaging(0.934) TCGA-P4-A5E7-01 1 162729664 162729664 G A DDR2 Silent p.V250V 0.30 TCGA-P4-A5E7-01 1 169390718 169390718 A - CCDC181 Frame_Shift_Del p.N318Ifs*12 0.32 TCGA-P4-A5E7-01 1 33161106 33161106 T G SYNC Missense_Mutation p.H198P 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-P4-A5E7-01 1 37949045 37949045 A T ZC3H12A Missense_Mutation p.R545W 0.27 deleterious(0.02) benign(0.302) TCGA-P4-A5E7-01 20 10653490 10653490 A C JAG1 Nonsense_Mutation p.Y82* 0.28 TCGA-P4-A5E7-01 20 18414380 18414380 C T DZANK1 Silent p.L259L 0.21 TCGA-P4-A5E7-01 20 31829269 31829269 G - BPIFA1 Frame_Shift_Del p.G221Afs*26 0.18 TCGA-P4-A5E7-01 20 33148555 33148555 G T PIGU 3'UTR 0.20 TCGA-P4-A5E7-01 20 33622951 33622951 G T TRPC4AP Silent p.A342A 0.44 TCGA-P4-A5E7-01 20 43093838 43093838 C A C20orf62 Missense_Mutation p.G28C 0.35 tolerated_low_confidence(0.14) unknown(0) TCGA-P4-A5E7-01 21 45534138 45534138 T C PWP2 Missense_Mutation p.V102A 0.20 deleterious(0.04) benign(0.052) TCGA-P4-A5E7-01 21 47721888 47721889 - G C21orf58 3'UTR 0.37 TCGA-P4-A5E7-01 21 47734801 47734801 G A C21orf58 Intron 0.31 TCGA-P4-A5E7-01 22 24106287 24106287 G A C22orf15 Silent p.V13V 0.37 TCGA-P4-A5E7-01 22 39066951 39066951 G A CBY1 Silent p.L47L 0.21 TCGA-P4-A5E7-01 22 45599044 45599044 C T KIAA0930 Missense_Mutation p.A232T 0.27 tolerated(0.06) benign(0.297) TCGA-P4-A5E7-01 2 108604763 108604763 T A SLC5A7 Nonsense_Mutation p.L51* 0.29 TCGA-P4-A5E7-01 2 170667495 170667495 A C SSB Missense_Mutation p.E313A 0.33 tolerated(0.22) benign(0.018) TCGA-P4-A5E7-01 2 218678511 218678511 C G TNS1 Silent p.P1482P 0.32 TCGA-P4-A5E7-01 2 220164041 220164041 A T PTPRN Missense_Mutation p.V530E 0.40 deleterious(0) probably_damaging(0.962) TCGA-P4-A5E7-01 2 241465102 241465102 C T ANKMY1 Silent p.Q356Q 0.37 TCGA-P4-A5E7-01 2 24149652 24149652 G C ATAD2B 5'UTR 0.20 TCGA-P4-A5E7-01 2 33002960 33002960 G A TTC27 Nonsense_Mutation p.W564* 0.35 TCGA-P4-A5E7-01 2 33813426 33813426 T C FAM98A Silent p.Q166Q 0.42 TCGA-P4-A5E7-01 2 69409663 69409663 T G ANTXR1 Silent p.A408A 0.26 TCGA-P4-A5E7-01 2 74718487 74718487 G A TTC31 Silent p.Q223Q 0.26 TCGA-P4-A5E7-01 2 84652539 84652539 C T SUCLG1 Silent p.K338K 0.29 TCGA-P4-A5E7-01 2 95976175 95976175 A G KCNIP3 Missense_Mutation p.I30V 0.30 tolerated_low_confidence(1) benign(0) TCGA-P4-A5E7-01 2 95976177 95976177 C T KCNIP3 Silent p.I30I 0.30 TCGA-P4-A5E7-01 3 119099827 119099827 A G ARHGAP31 Missense_Mutation p.H142R 0.45 deleterious(0) probably_damaging(1) TCGA-P4-A5E7-01 3 121415217 121415217 G A GOLGB1 Nonsense_Mutation p.Q1385* 0.19 TCGA-P4-A5E7-01 3 126114829 126114829 T G CCDC37 5'UTR 0.50 TCGA-P4-A5E7-01 3 137982982 137982982 C T ARMC8 Silent p.H395H 0.29 TCGA-P4-A5E7-01 3 139237296 139237296 C A RBP1 Missense_Mutation p.W169C 0.29 deleterious(0) probably_damaging(1) TCGA-P4-A5E7-01 3 49842183 49842183 A C FAM212A Missense_Mutation p.E209D 0.48 tolerated(0.09) probably_damaging(0.99) TCGA-P4-A5E7-01 4 160268070 160268070 T C RAPGEF2 Missense_Mutation p.I1050T 0.32 tolerated(0.73) benign(0.007) TCGA-P4-A5E7-01 4 186334930 186334930 T C UFSP2 Missense_Mutation p.I261V 0.29 deleterious(0.03) benign(0.005) TCGA-P4-A5E7-01 4 57797826 57797826 A C REST Missense_Mutation p.L934F 0.39 tolerated(0.16) benign(0.077) TCGA-P4-A5E7-01 5 132152331 132152331 A C SOWAHA 3'UTR 0.20 TCGA-P4-A5E7-01 5 16474833 16474833 G T FAM134B 3'UTR 0.25 TCGA-P4-A5E7-01 5 16474834 16474834 C T FAM134B 3'UTR 0.24 TCGA-P4-A5E7-01 5 67588157 67588158 - G PIK3R1 Frame_Shift_Ins p.D330Gfs*3 0.27 TCGA-P4-A5E7-01 6 159398820 159398821 TG - RSPH3 Frame_Shift_Del p.H478Sfs*8 0.26 TCGA-P4-A5E7-01 6 3010268 3010268 T C NQO2 Missense_Mutation p.V6A 0.28 tolerated(0.37) possibly_damaging(0.661) TCGA-P4-A5E7-01 6 31526116 31526116 G A NFKBIL1 Missense_Mutation p.G292S 0.32 tolerated(0.48) benign(0.256) TCGA-P4-A5E7-01 6 33284267 33284267 A G ZBTB22 Missense_Mutation p.C143R 0.43 deleterious(0) probably_damaging(0.999) TCGA-P4-A5E7-01 6 33560882 33560882 T C GGNBP1 3'Flank 0.43 TCGA-P4-A5E7-01 6 4032300 4032315 AAGTAAAAGCAGATCC - PRPF4B Frame_Shift_Del p.S184Kfs*92 0.14 TCGA-P4-A5E7-01 6 55039411 55039411 C G HCRTR2 Missense_Mutation p.S9C 0.36 deleterious_low_confidence(0.04) benign(0.054) TCGA-P4-A5E7-01 6 75848659 75848659 G T COL12A1 Missense_Mutation p.T1659K 0.25 benign(0.077) TCGA-P4-A5E7-01 7 101882763 101882763 G A CUX1 Silent p.A1273A 0.62 TCGA-P4-A5E7-01 7 11486930 11486931 - T THSD7A Frame_Shift_Ins p.T910Dfs*17 0.30 TCGA-P4-A5E7-01 7 150070153 150070153 G A REPIN1 3'Flank 0.22 TCGA-P4-A5E7-01 7 151845991 151845991 C A KMT2C Missense_Mutation p.G4341W 0.24 probably_damaging(0.95) TCGA-P4-A5E7-01 7 151873882 151873883 TT - KMT2C Frame_Shift_Del p.E2885Dfs*39 0.37 TCGA-P4-A5E7-01 7 17375399 17375399 G C AHR Missense_Mutation p.Q383H 0.55 tolerated(0.1) benign(0.189) TCGA-P4-A5E7-01 7 4794196 4794196 A C FOXK1 Missense_Mutation p.K285Q 0.54 tolerated(0.11) benign(0.05) TCGA-P4-A5E7-01 7 50057881 50057881 C A ZPBP Missense_Mutation p.K246N 0.18 tolerated(0.28) benign(0.063) TCGA-P4-A5E7-01 7 69364300 69364300 G A AUTS2 Missense_Mutation p.R113H 0.15 deleterious(0) possibly_damaging(0.579) TCGA-P4-A5E7-01 7 72873963 72873963 A G BAZ1B Missense_Mutation p.F1112S 0.63 deleterious(0.03) probably_damaging(0.997) TCGA-P4-A5E7-01 8 145694989 145694989 C A KIFC2 Missense_Mutation p.R447S 0.53 tolerated(0.14) benign(0.268) TCGA-P4-A5E7-01 8 42259309 42259309 G C VDAC3 Missense_Mutation p.K110N 0.31 tolerated(0.07) probably_damaging(0.962) TCGA-P4-A5E7-01 8 87235298 87235298 T - SLC7A13 Frame_Shift_Del p.K240Nfs*10 0.23 TCGA-P4-A5E7-01 8 99440470 99440470 G A KCNS2 Missense_Mutation p.G88D 0.33 deleterious(0) probably_damaging(1) TCGA-P4-A5E7-01 9 126125164 126125164 C T CRB2 Missense_Mutation p.P39S 0.38 tolerated(0.29) unknown(0) TCGA-P4-A5E7-01 9 27950499 27950499 G A LINGO2 Silent p.I57I 0.29 TCGA-P4-A5E7-01 9 37440482 37440482 C T ZBTB5 3'UTR 0.31 TCGA-P4-A5E7-01 9 80856624 80856624 G T CEP78 Missense_Mutation p.G171V 0.42 tolerated(0.13) probably_damaging(0.964) TCGA-P4-A5E7-01 X 115568961 115568961 G C SLC6A14 Missense_Mutation p.V18L 0.22 tolerated(0.66) benign(0.001) TCGA-P4-A5E7-01 X 47976491 47976491 G C SSX6 3'Flank 0.28 TCGA-P4-A5E8-01 10 24832228 24832229 AG - KIAA1217 Frame_Shift_Del p.D1344Ffs*15 0.32 TCGA-P4-A5E8-01 10 7621949 7621949 C T ITIH5 Missense_Mutation p.R396Q 0.52 tolerated(0.11) possibly_damaging(0.812) TCGA-P4-A5E8-01 10 89622671 89622671 A C KLLN 5'UTR 0.32 TCGA-P4-A5E8-01 10 95720900 95720900 C T PIPSL RNA 0.09 TCGA-P4-A5E8-01 11 111228192 111228192 G A POU2AF1 Missense_Mutation p.P145L 0.37 tolerated(0.1) benign(0.081) TCGA-P4-A5E8-01 11 113846045 113846045 G A HTR3A Missense_Mutation p.A6T 0.30 tolerated_low_confidence(1) unknown(0) TCGA-P4-A5E8-01 11 67413212 67413212 G A ACY3 Missense_Mutation p.A128V 0.05 tolerated(0.55) benign(0.002) TCGA-P4-A5E8-01 11 95564582 95564582 T C CEP57 3'UTR 0.64 TCGA-P4-A5E8-01 12 53494509 53494509 T - IGFBP6 Frame_Shift_Del p.P117Lfs*16 0.31 TCGA-P4-A5E8-01 13 38166281 38166281 C A POSTN Missense_Mutation p.C80F 0.50 deleterious(0) possibly_damaging(0.904) TCGA-P4-A5E8-01 15 43748237 43748237 G A TP53BP1 Nonsense_Mutation p.Q857* 0.39 TCGA-P4-A5E8-01 15 69339166 69339166 C A NOX5 Missense_Mutation p.S551Y 0.31 deleterious(0.01) benign(0.446) TCGA-P4-A5E8-01 16 1292323 1292323 G A TPSAB1 3'UTR 0.06 TCGA-P4-A5E8-01 16 16177358 16177358 G A ABCC1 Missense_Mutation p.E751K 0.22 tolerated(0.18) possibly_damaging(0.771) TCGA-P4-A5E8-01 16 29679138 29679139 AG - SPN 3'UTR 0.29 TCGA-P4-A5E8-01 16 67683208 67683208 C T RLTPR Silent p.D580D 0.42 TCGA-P4-A5E8-01 17 45925061 45925061 G A SP6 Silent p.P245P 0.37 TCGA-P4-A5E8-01 17 61432303 61432303 A G TANC2 Missense_Mutation p.T638A 0.40 tolerated(0.73) benign(0.001) TCGA-P4-A5E8-01 17 6676557 6676557 G T XAF1 3'UTR 0.60 TCGA-P4-A5E8-01 17 72306227 72306227 G T DNAI2 Silent p.L473L 0.35 TCGA-P4-A5E8-01 17 80617514 80617514 T A RAB40B Missense_Mutation p.D95V 0.37 deleterious(0) probably_damaging(1) TCGA-P4-A5E8-01 18 47802004 47802004 C T MBD1 Missense_Mutation p.R253H 0.33 deleterious(0.04) probably_damaging(1) TCGA-P4-A5E8-01 19 41076606 41076606 C T SPTBN4 Missense_Mutation p.L2431F 0.34 tolerated(0.08) possibly_damaging(0.849) TCGA-P4-A5E8-01 19 52376124 52376124 C A ZNF577 Missense_Mutation p.E373D 0.47 deleterious(0) benign(0) TCGA-P4-A5E8-01 19 55869916 55869916 C T FAM71E2 Missense_Mutation p.E774K 0.09 tolerated(0.61) unknown(0) TCGA-P4-A5E8-01 1 151134570 151134570 G T LYSMD1 Missense_Mutation p.Q63K 0.38 deleterious(0.01) possibly_damaging(0.869) TCGA-P4-A5E8-01 1 179815212 179815212 A C TOR1AIP2 Silent p.L469L 0.05 TCGA-P4-A5E8-01 1 202097307 202097311 CTCAA - GPR37L1 Frame_Shift_Del p.L357Qfs*79 0.55 TCGA-P4-A5E8-01 1 21133827 21133829 CTC - EIF4G3 In_Frame_Del p.E1587del 0.39 TCGA-P4-A5E8-01 1 27107136 27107137 AG - ARID1A Frame_Shift_Del p.E2250Vfs*27 0.15 TCGA-P4-A5E8-01 20 34778710 34778710 C G EPB41L1 Missense_Mutation p.L431V 0.30 deleterious(0) possibly_damaging(0.596) TCGA-P4-A5E8-01 20 37570604 37570604 G A FAM83D Silent p.V192V 0.35 TCGA-P4-A5E8-01 22 50728592 50728592 T A PLXNB2 Missense_Mutation p.K141M 0.36 deleterious(0.02) probably_damaging(0.975) TCGA-P4-A5E8-01 22 50728593 50728593 T C PLXNB2 Missense_Mutation p.K141E 0.37 tolerated(0.08) possibly_damaging(0.676) TCGA-P4-A5E8-01 2 110376070 110376077 TTTTAAAT - SOWAHC 3'UTR 0.55 TCGA-P4-A5E8-01 2 132275404 132275404 T G AC093838.4 RNA 0.40 TCGA-P4-A5E8-01 2 176981597 176981599 TTT - HOXD10 In_Frame_Del p.F13del 0.43 TCGA-P4-A5E8-01 2 191788697 191788701 AAAAG - GLS Frame_Shift_Del p.K398Vfs*22 0.28 TCGA-P4-A5E8-01 2 39964198 39964199 CT - THUMPD2 Frame_Shift_Del p.R396Sfs*13 0.21 TCGA-P4-A5E8-01 2 69475448 69475448 A T ANTXR1 3'UTR 0.31 TCGA-P4-A5E8-01 2 99634687 99634687 C T TSGA10 Missense_Mutation p.R683Q 0.35 tolerated(0.4) possibly_damaging(0.707) TCGA-P4-A5E8-01 3 98519583 98519584 AG - DCBLD2 Intron 0.40 TCGA-P4-A5E8-01 4 148545023 148545023 C G TMEM184C Missense_Mutation p.I54M 0.57 deleterious(0.01) possibly_damaging(0.593) TCGA-P4-A5E8-01 4 187629210 187629211 AC - FAT1 Frame_Shift_Del p.V591Ffs*4 0.33 TCGA-P4-A5E8-01 5 111506049 111506049 G A EPB41L4A Missense_Mutation p.P563L 0.32 deleterious(0) possibly_damaging(0.801) TCGA-P4-A5E8-01 5 112154880 112154880 G T APC Missense_Mutation p.S384I 0.39 possibly_damaging(0.823) TCGA-P4-A5E8-01 5 118556763 118556765 GAG - DMXL1 In_Frame_Del p.G2735del 0.36 TCGA-P4-A5E8-01 5 36986201 36986204 AAAG - NIPBL Frame_Shift_Del p.K975Wfs*3 0.28 TCGA-P4-A5E8-01 5 56210690 56210691 AG - SETD9 Frame_Shift_Del p.R237Sfs*3 0.10 TCGA-P4-A5E8-01 5 66456396 66456396 C A MAST4 Missense_Mutation p.S1254Y 0.34 probably_damaging(0.977) TCGA-P4-A5E8-01 6 142396953 142396953 G A NMBR Silent p.F335F 0.06 TCGA-P4-A5E8-01 7 104750955 104750955 G T KMT2E Silent p.P1292P 0.04 TCGA-P4-A5E8-01 7 27194707 27194707 G A HOXA7 Missense_Mutation p.R172C 0.28 deleterious(0) probably_damaging(0.999) TCGA-P4-A5E8-01 7 6777559 6777560 AG - PMS2CL RNA 0.24 TCGA-P4-A5E8-01 7 92731495 92731495 T - SAMD9 Frame_Shift_Del p.I1306Yfs*5 0.30 TCGA-P4-A5E8-01 7 99972037 99972037 C T PILRA Silent p.T145T 0.27 TCGA-P4-A5E8-01 8 104432551 104432551 G T DCAF13 Missense_Mutation p.A196S 0.36 deleterious(0) probably_damaging(0.985) TCGA-P4-A5E8-01 8 28984749 28984749 C G KIF13B Missense_Mutation p.V1038L 0.07 deleterious(0.04) benign(0.2) TCGA-P4-A5E8-01 9 15745613 15745613 C T CCDC171 Silent p.D885D 0.36 TCGA-P4-A5E8-01 X 2861169 2861169 C T ARSE Missense_Mutation p.G355S 0.68 deleterious(0) probably_damaging(1) TCGA-P4-A5E8-01 X 57621805 57621805 G A ZXDB 3'UTR 0.09 TCGA-P4-A5EA-01 10 124754057 124754057 T C IKZF5 Missense_Mutation p.K167E 0.05 tolerated(0.17) benign(0.001) TCGA-P4-A5EA-01 10 12856228 12856228 G A CAMK1D Missense_Mutation p.D226N 0.10 deleterious(0.04) benign(0.201) TCGA-P4-A5EA-01 10 3207428 3207429 AC - PITRM1 Splice_Site p.X210_splice 0.09 TCGA-P4-A5EA-01 10 71255378 71255378 G A TSPAN15 Missense_Mutation p.R129Q 0.24 tolerated(0.31) possibly_damaging(0.473) TCGA-P4-A5EA-01 11 117352683 117352683 G C DSCAML1 Missense_Mutation p.L912V 0.32 deleterious(0.03) probably_damaging(0.994) TCGA-P4-A5EA-01 11 117869470 117869470 G T IL10RA Missense_Mutation p.R284L 0.18 tolerated(1) benign(0) TCGA-P4-A5EA-01 11 124180084 124180085 GT - OR8D1 Frame_Shift_Del p.H193Pfs*3 0.20 TCGA-P4-A5EA-01 11 33731752 33731752 C T CD59 Missense_Mutation p.G103S 0.12 tolerated(0.2) possibly_damaging(0.506) TCGA-P4-A5EA-01 11 4621750 4621750 C T TRIM68 Missense_Mutation p.R405Q 0.22 tolerated(0.21) benign(0.041) TCGA-P4-A5EA-01 11 62285795 62285796 AG - AHNAK Frame_Shift_Del p.L5365Efs*14 0.09 TCGA-P4-A5EA-01 11 62364175 62364176 CT - MTA2 Frame_Shift_Del p.E272Gfs*5 0.17 TCGA-P4-A5EA-01 12 101720912 101720912 C A UTP20 Missense_Mutation p.S1032Y 0.14 deleterious(0.01) probably_damaging(0.954) TCGA-P4-A5EA-01 12 120572149 120572149 G C GCN1L1 Silent p.A2421A 0.12 TCGA-P4-A5EA-01 12 53499371 53499372 AG - SOAT2 Frame_Shift_Del p.K102Sfs*10 0.10 TCGA-P4-A5EA-01 13 103328750 103328750 G T TPP2 Missense_Mutation p.W1215C 0.08 tolerated(0.15) benign(0.379) TCGA-P4-A5EA-01 13 24167593 24167593 A C TNFRSF19 Missense_Mutation p.K60T 0.14 deleterious(0.01) possibly_damaging(0.557) TCGA-P4-A5EA-01 13 46946278 46946278 G A KIAA0226L Silent p.S111S 0.05 TCGA-P4-A5EA-01 14 81251281 81251284 CTTA - CEP128 Frame_Shift_Del p.F722Lfs*14 0.29 TCGA-P4-A5EA-01 14 94052953 94052953 G C UNC79 Missense_Mutation p.D762H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.672) TCGA-P4-A5EA-01 15 34673598 34673598 G C GOLGA8A 3'UTR 0.25 TCGA-P4-A5EA-01 15 69553563 69553564 AG - GLCE Frame_Shift_Del p.D243Qfs*5 0.18 TCGA-P4-A5EA-01 15 75500838 75500838 A G C15orf39 Missense_Mutation p.K817E 0.16 tolerated(0.11) benign(0.078) TCGA-P4-A5EA-01 15 85085493 85085493 C A UBE2Q2P1 RNA 0.33 TCGA-P4-A5EA-01 16 1370453 1370453 A G UBE2I Missense_Mutation p.I116M 0.12 deleterious(0) possibly_damaging(0.842) TCGA-P4-A5EA-01 16 30744761 30744761 A G SRCAP Silent p.E2096E 0.25 TCGA-P4-A5EA-01 16 3817823 3817823 C A CREBBP Nonsense_Mutation p.E1050* 0.26 TCGA-P4-A5EA-01 16 61823266 61823266 G C CDH8 Missense_Mutation p.I466M 0.07 deleterious(0.01) possibly_damaging(0.617) TCGA-P4-A5EA-01 16 81197248 81197248 C T PKD1L2 RNA 0.24 TCGA-P4-A5EA-01 16 89924825 89924826 AG - SPIRE2 Frame_Shift_Del p.D395Cfs*21 0.09 TCGA-P4-A5EA-01 17 131631 131631 T A RPH3AL Missense_Mutation p.K122N 0.20 deleterious(0) probably_damaging(0.964) TCGA-P4-A5EA-01 17 43228930 43228931 AG - HEXIM1 3'UTR 0.09 TCGA-P4-A5EA-01 17 73239164 73239164 C G GGA3 Missense_Mutation p.D170H 0.25 deleterious(0) probably_damaging(0.971) TCGA-P4-A5EA-01 17 7531123 7531123 G A SAT2 5'UTR 0.25 TCGA-P4-A5EA-01 17 8283223 8283223 A C RPL26 Missense_Mutation p.I67S 0.10 deleterious(0.05) benign(0.019) TCGA-P4-A5EA-01 18 19995948 19995948 G C CTAGE1 Silent p.L609L 0.08 TCGA-P4-A5EA-01 18 70532934 70532934 T C NETO1 Intron 0.23 TCGA-P4-A5EA-01 19 22271296 22271296 G A ZNF257 Silent p.K248K 0.10 TCGA-P4-A5EA-01 19 41444913 41444913 C A CYP2B7P RNA 0.15 TCGA-P4-A5EA-01 19 54401866 54401866 C G PRKCG Missense_Mutation p.S422C 0.11 tolerated(0.29) possibly_damaging(0.618) TCGA-P4-A5EA-01 19 55743012 55743012 T G PPP6R1 Silent p.S777S 0.07 TCGA-P4-A5EA-01 19 6393045 6393049 TTCCT - GTF2F1 5'UTR 0.11 TCGA-P4-A5EA-01 19 9058716 9058716 G C MUC16 Nonsense_Mutation p.S9577* 0.19 TCGA-P4-A5EA-01 1 114255942 114255943 TT - PHTF1 Frame_Shift_Del p.K250Sfs*11 0.17 TCGA-P4-A5EA-01 1 151552139 151552139 A G TUFT1 Silent p.K313K 0.12 TCGA-P4-A5EA-01 1 153792180 153792180 G C GATAD2B Missense_Mutation p.P123A 0.08 deleterious(0.02) benign(0.437) TCGA-P4-A5EA-01 1 16459720 16459721 - TG EPHA2 Frame_Shift_Ins p.F670Hfs*10 0.23 TCGA-P4-A5EA-01 1 27687435 27687435 C T MAP3K6 Missense_Mutation p.E633K 0.34 tolerated(0.09) benign(0.066) TCGA-P4-A5EA-01 1 34033363 34033363 C A CSMD2 Missense_Mutation p.G2714V 0.12 tolerated(0.98) probably_damaging(0.983) TCGA-P4-A5EA-01 1 57756787 57756787 C G DAB1 5'UTR 0.33 TCGA-P4-A5EA-01 22 30057329 30057329 G A NF2 Splice_Site p.X270_splice 0.32 TCGA-P4-A5EA-01 22 35723290 35723290 G T TOM1 Missense_Mutation p.E225D 0.14 tolerated(1) probably_damaging(0.963) TCGA-P4-A5EA-01 22 35723291 35723291 A C TOM1 Missense_Mutation p.M226L 0.15 tolerated(0.4) benign(0.002) TCGA-P4-A5EA-01 22 37396006 37396008 TCA - TEX33 In_Frame_Del p.D169del 0.29 TCGA-P4-A5EA-01 22 46501510 46501510 C T FLJ27365 Intron 0.32 TCGA-P4-A5EA-01 2 113260608 113260609 AT - TTL Frame_Shift_Del p.N242Tfs*15 0.25 TCGA-P4-A5EA-01 2 170557975 170557975 T A PHOSPHO2 Nonsense_Mutation p.L165* 0.08 TCGA-P4-A5EA-01 2 70188625 70188626 AG - ASPRV1 Frame_Shift_Del p.C66Wfs*11 0.09 TCGA-P4-A5EA-01 3 101572345 101572345 C - NFKBIZ Frame_Shift_Del p.L326Sfs*15 0.16 TCGA-P4-A5EA-01 3 111297955 111297955 C T CD96 Missense_Mutation p.L225F 0.07 deleterious(0.01) benign(0.422) TCGA-P4-A5EA-01 3 119642255 119642255 G T GSK3B Silent p.R148R 0.10 TCGA-P4-A5EA-01 3 147128794 147128794 G T ZIC1 Nonsense_Mutation p.E299* 0.21 TCGA-P4-A5EA-01 3 160219840 160219840 A C KPNA4 3'UTR 0.23 TCGA-P4-A5EA-01 3 37365077 37365078 AG - GOLGA4 Splice_Site p.X590_splice 0.17 TCGA-P4-A5EA-01 3 9959173 9959173 C T IL17RC Silent p.S58S 0.10 TCGA-P4-A5EA-01 4 1332242 1332242 G A MAEA Missense_Mutation p.S311N 0.24 tolerated(1) benign(0) TCGA-P4-A5EA-01 4 166996130 166996130 T C TLL1 Silent p.H763H 0.11 TCGA-P4-A5EA-01 5 139928645 139928646 AG - EIF4EBP3 Frame_Shift_Del p.E87Gfs*6 0.14 TCGA-P4-A5EA-01 5 140515133 140515134 AG - PCDHB5 Frame_Shift_Del p.E40Kfs*38 0.10 TCGA-P4-A5EA-01 5 56183244 56183245 - TA MAP3K1 Frame_Shift_Ins p.R1385Sfs*38 0.12 TCGA-P4-A5EA-01 5 57754549 57754549 T C PLK2 Intron 0.18 TCGA-P4-A5EA-01 5 72359736 72359736 C A FCHO2 Missense_Mutation p.L472I 0.31 tolerated(0.11) benign(0.016) TCGA-P4-A5EA-01 5 86564698 86564699 CC - RASA1 Frame_Shift_Del p.P145Ffs*12 0.34 TCGA-P4-A5EA-01 6 153315714 153315714 C G MTRF1L Missense_Mutation p.K207N 0.12 deleterious(0.01) possibly_damaging(0.774) TCGA-P4-A5EA-01 6 31625014 31625014 C G APOM Silent p.L94L 0.05 TCGA-P4-A5EA-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.45 deleterious(0) possibly_damaging(0.79) TCGA-P4-A5EA-01 7 150775936 150775938 GCT - FASTK In_Frame_Del p.S226del 0.12 TCGA-P4-A5EA-01 7 37025563 37025563 T C ELMO1 Intron 0.16 TCGA-P4-A5EA-01 7 70231266 70231266 G A AUTS2 Silent p.P545P 0.37 TCGA-P4-A5EA-01 7 99355670 99355670 G C CYP3A4 3'UTR 0.21 TCGA-P4-A5EA-01 8 124094982 124094982 C A TBC1D31 Missense_Mutation p.L89M 0.10 deleterious(0) probably_damaging(0.963) TCGA-P4-A5EA-01 8 146066868 146066869 TC - ZNF7 Frame_Shift_Del p.S126* 0.10 TCGA-P4-A5EA-01 9 119461631 119461631 T A TRIM32 Missense_Mutation p.L537Q 0.09 deleterious(0.01) possibly_damaging(0.823) TCGA-P4-A5EA-01 9 133914285 133914285 G A LAMC3 Silent p.T337T 0.11 TCGA-P4-A5EA-01 9 40772643 40772644 CT - ZNF658 Frame_Shift_Del p.K880Tfs*3 0.08 TCGA-P4-A5EA-01 X 101615520 101615520 T C NXF2B 3'UTR 0.02 TCGA-P4-A5EA-01 X 122757675 122757675 T C THOC2 Missense_Mutation p.K1156E 0.15 deleterious(0) probably_damaging(0.949) TCGA-P4-A5EA-01 X 140335647 140335647 T C SPANXC 3'UTR 0.12 TCGA-P4-A5EA-01 X 37850467 37850467 G C CXorf27 3'UTR 0.19 TCGA-P4-A5EA-01 X 39913206 39913207 AC - BCOR Frame_Shift_Del p.F1637* 0.08 TCGA-P4-A5EA-01 X 41022128 41022128 T C USP9X Silent p.L661L 0.03 TCGA-P4-A5EA-01 X 50144042 50144042 T C DGKK RNA 0.25 TCGA-P4-A5EB-01 10 125506232 125506232 T C CPXM2 3'UTR 0.19 TCGA-P4-A5EB-01 10 13160994 13160994 C T OPTN Nonsense_Mutation p.Q245* 0.57 TCGA-P4-A5EB-01 10 135013012 135013012 G A KNDC1 Missense_Mutation p.A937T 0.07 tolerated(0.17) possibly_damaging(0.532) TCGA-P4-A5EB-01 10 97917491 97917491 G T ZNF518A RNA 0.54 TCGA-P4-A5EB-01 10 99080255 99080255 T C FRAT1 3'UTR 0.71 TCGA-P4-A5EB-01 11 101762169 101762169 G A ANGPTL5 Silent p.N336N 0.42 TCGA-P4-A5EB-01 11 10820842 10820842 T G EIF4G2 Missense_Mutation p.K818N 0.50 tolerated(0.17) probably_damaging(0.993) TCGA-P4-A5EB-01 11 113265705 113265705 A C ANKK1 Missense_Mutation p.I179L 0.45 tolerated(0.09) benign(0.084) TCGA-P4-A5EB-01 11 14063070 14063070 C T SPON1 Intron 0.32 TCGA-P4-A5EB-01 11 4661643 4661643 A T OR51D1 Missense_Mutation p.N208I 0.42 deleterious(0) probably_damaging(0.961) TCGA-P4-A5EB-01 11 46799004 46799004 G C CKAP5 Silent p.V949V 0.43 TCGA-P4-A5EB-01 11 47837537 47837537 A G NUP160 Silent p.S492S 0.49 TCGA-P4-A5EB-01 11 48142728 48142728 T G PTPRJ Missense_Mutation p.L176V 0.39 deleterious(0) probably_damaging(0.967) TCGA-P4-A5EB-01 12 121132908 121132908 A - MLEC Frame_Shift_Del p.D201Afs*96 0.32 TCGA-P4-A5EB-01 12 14943406 14943406 A G WBP11 Silent p.P431P 0.18 TCGA-P4-A5EB-01 12 1940301 1940301 A T LRTM2 Missense_Mutation p.N90Y 0.52 deleterious(0.01) probably_damaging(0.977) TCGA-P4-A5EB-01 12 49944077 49944077 A C KCNH3 Missense_Mutation p.E628A 0.50 deleterious(0) probably_damaging(1) TCGA-P4-A5EB-01 12 50748961 50748961 G - FAM186A Frame_Shift_Del p.R552Vfs*34 0.26 TCGA-P4-A5EB-01 12 53554015 53554015 T C CSAD Missense_Mutation p.K379R 0.50 deleterious(0.05) probably_damaging(0.96) TCGA-P4-A5EB-01 12 54756649 54756649 G A GPR84 Silent p.A329A 0.07 TCGA-P4-A5EB-01 12 56578005 56578005 G T SMARCC2 Missense_Mutation p.N172K 0.39 tolerated(0.11) benign(0.005) TCGA-P4-A5EB-01 12 57674168 57674168 T C R3HDM2 Silent p.P425P 0.17 TCGA-P4-A5EB-01 12 58165807 58165807 G A METTL1 Silent p.Y20Y 0.40 TCGA-P4-A5EB-01 12 660177 660177 C T B4GALNT3 Missense_Mutation p.R363C 0.23 deleterious(0) probably_damaging(0.987) TCGA-P4-A5EB-01 12 99093184 99093184 A C APAF1 Splice_Site p.X769_splice 0.38 TCGA-P4-A5EB-01 12 9980083 9980083 T C KLRF1 5'UTR 0.57 TCGA-P4-A5EB-01 13 36383187 36383187 A G DCLK1 Silent p.Y578Y 0.35 TCGA-P4-A5EB-01 13 61989339 61989339 A G PCDH20 5'UTR 0.46 TCGA-P4-A5EB-01 13 96684163 96684163 A G UGGT2 Missense_Mutation p.L74S 0.36 tolerated(0.08) probably_damaging(0.941) TCGA-P4-A5EB-01 14 102478240 102478240 T C DYNC1H1 Missense_Mutation p.I2216T 0.32 possibly_damaging(0.754) TCGA-P4-A5EB-01 14 105833603 105833603 C T PACS2 Silent p.I159I 0.29 TCGA-P4-A5EB-01 14 21769308 21769308 C T RPGRIP1 Silent p.A134A 0.25 TCGA-P4-A5EB-01 14 23240479 23240479 T A OXA1L Missense_Mutation p.W429R 0.55 deleterious(0) possibly_damaging(0.871) TCGA-P4-A5EB-01 14 23828918 23828918 G A EFS Silent p.L257L 0.30 TCGA-P4-A5EB-01 14 50081041 50081041 G T LRR1 Missense_Mutation p.V358F 0.19 tolerated(0.12) benign(0.19) TCGA-P4-A5EB-01 14 63881922 63881922 A - PPP2R5E Frame_Shift_Del p.L162Wfs*15 0.35 TCGA-P4-A5EB-01 14 75537677 75537677 G T ZC2HC1C Missense_Mutation p.G134V 0.34 deleterious(0) probably_damaging(1) TCGA-P4-A5EB-01 15 28437274 28437274 G C HERC2 Missense_Mutation p.R2762G 0.06 benign(0.011) TCGA-P4-A5EB-01 15 45048565 45048565 G C TRIM69 Splice_Site p.X162_splice 0.43 TCGA-P4-A5EB-01 15 48748937 48748937 G T FBN1 Silent p.I1773I 0.39 TCGA-P4-A5EB-01 15 65494241 65494241 C A CILP Silent p.V385V 0.37 TCGA-P4-A5EB-01 15 65917018 65917018 C A SLC24A1 Nonsense_Mutation p.Y200* 0.44 TCGA-P4-A5EB-01 15 91811781 91811781 T A SV2B Missense_Mutation p.I440N 0.08 deleterious(0) possibly_damaging(0.466) TCGA-P4-A5EB-01 16 18532258 18532258 G T NOMO2 Missense_Mutation p.S701Y 0.32 deleterious(0.01) probably_damaging(0.931) TCGA-P4-A5EB-01 16 1995884 1995884 C T RPL3L Silent p.L333L 0.06 TCGA-P4-A5EB-01 16 23713536 23713536 C T ERN2 Silent p.L428L 0.19 TCGA-P4-A5EB-01 16 3614323 3614323 G C NLRC3 Missense_Mutation p.S252R 0.35 tolerated(0.13) benign(0.014) TCGA-P4-A5EB-01 16 3779018 3779018 C T CREBBP Silent p.G2010G 0.33 TCGA-P4-A5EB-01 16 57012127 57012127 G A CETP Missense_Mutation p.R369H 0.11 tolerated(0.58) benign(0.001) TCGA-P4-A5EB-01 16 8736394 8736394 T C METTL22 Missense_Mutation p.C328R 0.40 deleterious(0.01) possibly_damaging(0.728) TCGA-P4-A5EB-01 16 88497843 88497843 G T ZNF469 Missense_Mutation p.R1294L 0.12 benign(0.002) TCGA-P4-A5EB-01 17 1303425 1303425 G C YWHAE 5'UTR 0.46 TCGA-P4-A5EB-01 17 13980322 13980322 G C COX10 Missense_Mutation p.V150L 0.41 tolerated(1) benign(0.002) TCGA-P4-A5EB-01 17 33807110 33807110 G A SLFN12L Missense_Mutation p.T40I 0.08 tolerated(0.35) possibly_damaging(0.686) TCGA-P4-A5EB-01 17 34233855 34233855 T C AC015849.16 RNA 0.50 TCGA-P4-A5EB-01 17 38325848 38325848 C T CASC3 Intron 0.40 TCGA-P4-A5EB-01 17 39596920 39596920 A C KRT38 Missense_Mutation p.I85S 0.42 tolerated(0.22) possibly_damaging(0.779) TCGA-P4-A5EB-01 17 39925817 39925817 C G JUP Missense_Mutation p.E107D 0.24 tolerated(1) benign(0) TCGA-P4-A5EB-01 17 4999081 4999081 A C ZFP3 3'UTR 0.45 TCGA-P4-A5EB-01 17 65105385 65105385 C T HELZ Missense_Mutation p.E1446K 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-P4-A5EB-01 17 74081440 74081440 G A EXOC7 Missense_Mutation p.S607F 0.08 tolerated(0.73) benign(0.136) TCGA-P4-A5EB-01 17 9683157 9683157 T A DHRS7C Missense_Mutation p.I156F 0.08 deleterious(0) probably_damaging(0.988) TCGA-P4-A5EB-01 18 42533244 42533244 C T SETBP1 Silent p.D1313D 0.26 TCGA-P4-A5EB-01 19 10610178 10610178 G A KEAP1 Nonsense_Mutation p.Q178* 0.89 TCGA-P4-A5EB-01 19 15353721 15353721 G T BRD4 Silent p.P1053P 0.86 TCGA-P4-A5EB-01 19 31769094 31769094 G T TSHZ3 Missense_Mutation p.N535K 0.21 deleterious(0) probably_damaging(0.997) TCGA-P4-A5EB-01 19 33350841 33350841 A G SLC7A9 Missense_Mutation p.I260T 0.52 deleterious(0) possibly_damaging(0.864) TCGA-P4-A5EB-01 19 33793108 33793108 G T CEBPA Silent p.A71A 0.37 TCGA-P4-A5EB-01 19 33793120 33793120 G T CEBPA Nonsense_Mutation p.Y67* 0.33 TCGA-P4-A5EB-01 19 34991065 34991065 G A WTIP Missense_Mutation p.G395E 0.47 tolerated(0.06) probably_damaging(0.99) TCGA-P4-A5EB-01 19 35758028 35758028 C A LSR Silent p.T435T 0.59 TCGA-P4-A5EB-01 19 36279064 36279064 C T ARHGAP33 Silent p.P1038P 0.33 TCGA-P4-A5EB-01 19 38125839 38125839 T C ZFP30 3'UTR 0.40 TCGA-P4-A5EB-01 19 40357745 40357745 G T FCGBP Missense_Mutation p.L5190M 0.12 possibly_damaging(0.896) TCGA-P4-A5EB-01 19 40788466 40788466 A - AKT2 Intron 0.21 TCGA-P4-A5EB-01 19 50412996 50412996 C T NUP62 Silent p.T23T 0.61 TCGA-P4-A5EB-01 19 5286082 5286082 C A PTPRS Missense_Mutation p.V24F 0.51 tolerated_low_confidence(0.1) benign(0.171) TCGA-P4-A5EB-01 19 54378376 54378376 T A MYADM 3'UTR 0.21 TCGA-P4-A5EB-01 19 54687463 54687463 T A MBOAT7 Missense_Mutation p.D145V 0.52 tolerated(0.13) benign(0.073) TCGA-P4-A5EB-01 19 58385280 58385281 TG - ZNF814 Frame_Shift_Del p.Q493Vfs*28 0.09 TCGA-P4-A5EB-01 1 100212920 100212920 C T FRRS1 Missense_Mutation p.G88D 0.32 tolerated(0.17) probably_damaging(0.927) TCGA-P4-A5EB-01 1 10700024 10700024 C A CASZ1 Missense_Mutation p.A1419S 0.25 deleterious(0.05) probably_damaging(0.947) TCGA-P4-A5EB-01 1 110125084 110125084 T G GNAI3 Missense_Mutation p.S163A 0.20 tolerated(1) benign(0.003) TCGA-P4-A5EB-01 1 111147091 111147091 G C KCNA2 Missense_Mutation p.P105R 0.65 deleterious(0) benign(0.446) TCGA-P4-A5EB-01 1 11728776 11728776 C G FBXO6 Missense_Mutation p.L21V 0.31 tolerated(0.07) probably_damaging(0.939) TCGA-P4-A5EB-01 1 12711237 12711237 G T AADACL4 Silent p.V88V 0.54 TCGA-P4-A5EB-01 1 151298697 151298697 T C PI4KB 5'UTR 0.47 TCGA-P4-A5EB-01 1 154841897 154841897 C T KCNN3 Missense_Mutation p.G182S 0.34 deleterious(0) possibly_damaging(0.857) TCGA-P4-A5EB-01 1 154987232 154987232 C G ZBTB7B Missense_Mutation p.H66Q 0.31 tolerated(0.09) benign(0) TCGA-P4-A5EB-01 1 155184062 155184062 C A MTX1 3'Flank 0.25 TCGA-P4-A5EB-01 1 166959198 166959198 T G MAEL Intron 0.32 TCGA-P4-A5EB-01 1 175130220 175130220 A G KIAA0040 5'UTR 0.16 TCGA-P4-A5EB-01 1 211462545 211462545 C A RCOR3 Missense_Mutation p.T249N 0.10 tolerated(0.51) benign(0.005) TCGA-P4-A5EB-01 1 243800913 243800913 C T AKT3 Silent p.K187K 0.17 TCGA-P4-A5EB-01 1 25628090 25628090 G A RHD Silent p.V238V 0.92 TCGA-P4-A5EB-01 1 34015918 34015918 G T CSMD2 Missense_Mutation p.H2782N 0.57 tolerated(1) benign(0.002) TCGA-P4-A5EB-01 1 36479547 36479547 T A AGO3 Missense_Mutation p.V435E 0.10 tolerated(0.1) possibly_damaging(0.732) TCGA-P4-A5EB-01 1 39853737 39853737 G C MACF1 Missense_Mutation p.G3013R 0.29 probably_damaging(1) TCGA-P4-A5EB-01 1 46496699 46496702 TGTC GG MAST2 Frame_Shift_Del p.V910Gfs*2 0.10 TCGA-P4-A5EB-01 1 55529096 55529096 G - PCSK9 Frame_Shift_Del p.T641Pfs*10 0.40 TCGA-P4-A5EB-01 1 63974218 63974218 T G ITGB3BP Missense_Mutation p.D49A 0.26 tolerated(0.06) benign(0.202) TCGA-P4-A5EB-01 1 68171150 68171150 G C GNG12 Missense_Mutation p.T68S 0.47 tolerated(0.91) benign(0.185) TCGA-P4-A5EB-01 1 915233 915233 G T C1orf170 Missense_Mutation p.P299T 0.11 tolerated(0.11) benign(0.018) TCGA-P4-A5EB-01 20 43378853 43378853 G A KCNK15 Missense_Mutation p.V123I 0.30 tolerated(0.07) probably_damaging(0.998) TCGA-P4-A5EB-01 20 45801422 45801422 G C EYA2 Missense_Mutation p.G369R 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-P4-A5EB-01 20 49577135 49577135 C A MOCS3 3'UTR 0.48 TCGA-P4-A5EB-01 20 49577136 49577136 T C MOCS3 3'UTR 0.47 TCGA-P4-A5EB-01 21 15554119 15554119 C T LIPI Silent p.T222T 0.27 TCGA-P4-A5EB-01 21 22906941 22906941 A T NCAM2 Missense_Mutation p.N789I 0.29 tolerated(0.09) benign(0.057) TCGA-P4-A5EB-01 21 42551431 42551431 C T BACE2 Intron 0.29 TCGA-P4-A5EB-01 22 39436884 39436884 G A APOBEC3F 5'UTR 0.09 TCGA-P4-A5EB-01 22 41633556 41633556 T C CHADL Missense_Mutation p.N507S 0.13 deleterious(0) probably_damaging(0.999) TCGA-P4-A5EB-01 22 50989284 50989284 T G KLHDC7B 3'UTR 0.49 TCGA-P4-A5EB-01 22 51160316 51160316 C T SHANK3 Missense_Mutation p.A1368V 0.59 probably_damaging(0.994) TCGA-P4-A5EB-01 2 109382102 109382102 A G RANBP2 Missense_Mutation p.T1703A 0.44 tolerated(0.75) benign(0.005) TCGA-P4-A5EB-01 2 111921958 111921958 G A BCL2L11 3'UTR 0.19 TCGA-P4-A5EB-01 2 128941262 128941262 G T UGGT1 Missense_Mutation p.V1420L 0.41 deleterious(0) possibly_damaging(0.829) TCGA-P4-A5EB-01 2 135744072 135744072 C G MAP3K19 Missense_Mutation p.Q790H 0.37 tolerated(0.12) benign(0.014) TCGA-P4-A5EB-01 2 163208899 163208899 A C GCA Missense_Mutation p.I82L 0.49 tolerated(0.1) benign(0.035) TCGA-P4-A5EB-01 2 168102112 168102112 C G XIRP2 Missense_Mutation p.H1404D 0.40 benign(0.274) TCGA-P4-A5EB-01 2 169746011 169746011 C G SPC25 Missense_Mutation p.A7P 0.40 tolerated(0.07) benign(0.132) TCGA-P4-A5EB-01 2 170677784 170677784 C A METTL5 Splice_Site p.X75_splice 0.35 TCGA-P4-A5EB-01 2 18113163 18113163 G C KCNS3 Missense_Mutation p.R296S 0.40 deleterious(0) probably_damaging(1) TCGA-P4-A5EB-01 2 204304774 204304775 AC - RAPH1 Frame_Shift_Del p.A1048Kfs*24 0.38 TCGA-P4-A5EB-01 2 220022946 220022946 C T NHEJ1 Missense_Mutation p.E47K 0.42 deleterious(0) probably_damaging(0.999) TCGA-P4-A5EB-01 2 220354060 220354064 TCTTC - SPEG Frame_Shift_Del p.S2775Cfs*22 0.47 TCGA-P4-A5EB-01 2 239140742 239140742 T C AC016757.3 5'Flank 0.47 TCGA-P4-A5EB-01 2 26435355 26435355 T C HADHA Intron 0.45 TCGA-P4-A5EB-01 2 27315218 27315218 G T KHK Missense_Mutation p.W37C 0.48 deleterious(0.03) probably_damaging(0.936) TCGA-P4-A5EB-01 2 54028861 54028861 C A ERLEC1 Missense_Mutation p.S254Y 0.46 deleterious(0) probably_damaging(0.921) TCGA-P4-A5EB-01 2 71304704 71304704 A G NAGK Missense_Mutation p.K307R 0.36 tolerated(0.26) benign(0.005) TCGA-P4-A5EB-01 3 105572285 105572285 C A CBLB Missense_Mutation p.R131I 0.26 deleterious(0) probably_damaging(0.994) TCGA-P4-A5EB-01 3 121554190 121554190 G A EAF2 Missense_Mutation p.G20R 0.09 deleterious(0.03) probably_damaging(1) TCGA-P4-A5EB-01 3 122436993 122436993 C G PARP14 Nonsense_Mutation p.S1359* 0.56 TCGA-P4-A5EB-01 3 139195286 139195286 T A RBP2 Missense_Mutation p.N6Y 0.16 deleterious(0.01) possibly_damaging(0.717) TCGA-P4-A5EB-01 3 141162052 141162058 TTCGGAT - ZBTB38 Frame_Shift_Del p.S275Qfs*14 0.28 TCGA-P4-A5EB-01 3 148857880 148857881 - GT HPS3 Frame_Shift_Ins p.I106Vfs*4 0.23 TCGA-P4-A5EB-01 3 171395429 171395429 G A PLD1 Silent p.T641T 0.27 TCGA-P4-A5EB-01 3 186508173 186508173 T A RFC4 Missense_Mutation p.D275V 0.26 deleterious(0.04) benign(0.151) TCGA-P4-A5EB-01 3 193096449 193096449 C T ATP13A5 Intron 0.33 TCGA-P4-A5EB-01 3 52428521 52428521 T C DNAH1 Missense_Mutation p.I3556T 0.50 benign(0.001) TCGA-P4-A5EB-01 3 58242370 58242370 A T ABHD6 Silent p.P19P 0.23 TCGA-P4-A5EB-01 3 88189810 88189810 T G ZNF654 Missense_Mutation p.I450M 0.37 tolerated(0.12) benign(0.002) TCGA-P4-A5EB-01 3 9475587 9475587 A G SETD5 Missense_Mutation p.N44D 0.27 tolerated(0.24) benign(0.155) TCGA-P4-A5EB-01 4 119952707 119952707 A T SYNPO2 Missense_Mutation p.N926I 0.14 deleterious(0) probably_damaging(1) TCGA-P4-A5EB-01 4 3162057 3162057 C T HTT Missense_Mutation p.R1268C 0.37 benign(0.013) TCGA-P4-A5EB-01 4 36152575 36152575 G T ARAP2 Silent p.I948I 0.32 TCGA-P4-A5EB-01 4 76416940 76416940 A - RCHY1 Frame_Shift_Del p.L168Yfs*10 0.36 TCGA-P4-A5EB-01 5 112257770 112257770 C A REEP5 Missense_Mutation p.G40C 0.40 deleterious(0) possibly_damaging(0.868) TCGA-P4-A5EB-01 5 131007961 131007961 C T FNIP1 Missense_Mutation p.G726R 0.57 deleterious(0.02) probably_damaging(0.945) TCGA-P4-A5EB-01 5 176721020 176721020 G T NSD1 Missense_Mutation p.E2217D 0.40 deleterious(0) probably_damaging(0.989) TCGA-P4-A5EB-01 5 178050363 178050363 C A CLK4 Nonsense_Mutation p.G19* 0.42 TCGA-P4-A5EB-01 5 75888702 75888702 G A IQGAP2 Missense_Mutation p.E287K 0.17 tolerated(0.06) benign(0.245) TCGA-P4-A5EB-01 5 75888710 75888710 G A IQGAP2 Silent p.L289L 0.16 TCGA-P4-A5EB-01 5 75973147 75973147 C T IQGAP2 Missense_Mutation p.S1211L 0.12 deleterious(0) possibly_damaging(0.893) TCGA-P4-A5EB-01 6 139487930 139487930 G - HECA Frame_Shift_Del p.G261Vfs*38 0.29 TCGA-P4-A5EB-01 6 149285787 149285787 G A UST Intron 0.33 TCGA-P4-A5EB-01 6 149997827 149997827 C G LATS1 Silent p.G880G 0.27 TCGA-P4-A5EB-01 6 28402345 28402345 G A ZSCAN23 Missense_Mutation p.T356I 0.56 deleterious(0) probably_damaging(0.921) TCGA-P4-A5EB-01 6 30614464 30614464 C A ATAT1 3'UTR 0.32 TCGA-P4-A5EB-01 6 32016288 32016288 C T TNXB 5'Flank 0.61 TCGA-P4-A5EB-01 6 32063589 32063589 C G TNXB Missense_Mutation p.E681Q 0.05 probably_damaging(0.969) TCGA-P4-A5EB-01 6 38818063 38818080 ATAAAAATAATGCAGCGA - DNAH8 In_Frame_Del p.I1529_R1534del 0.41 TCGA-P4-A5EB-01 6 4060772 4060772 G T PRPF4B Missense_Mutation p.Q982H 0.03 deleterious(0.04) unknown(0) TCGA-P4-A5EB-01 6 43155541 43155541 A G CUL9 Missense_Mutation p.S558G 0.22 deleterious(0.04) benign(0.074) TCGA-P4-A5EB-01 6 43273425 43273425 C T CRIP3 3'UTR 0.35 TCGA-P4-A5EB-01 6 46609897 46609897 T C CYP39A1 Intron 0.18 TCGA-P4-A5EB-01 6 51586795 51586795 T G PKHD1 Intron 0.42 TCGA-P4-A5EB-01 6 52269919 52269919 G A PAQR8 3'UTR 0.16 TCGA-P4-A5EB-01 6 83767555 83767555 T G UBE3D Missense_Mutation p.K88N 0.53 deleterious(0.04) benign(0.002) TCGA-P4-A5EB-01 6 99823846 99823846 T A COQ3 Silent p.T233T 0.33 TCGA-P4-A5EB-01 7 129856036 129856036 A T SSMEM1 Missense_Mutation p.E154V 0.26 deleterious(0.04) possibly_damaging(0.607) TCGA-P4-A5EB-01 7 139258060 139258060 C A HIPK2 Silent p.P1070P 0.31 TCGA-P4-A5EB-01 7 142334913 142334913 A G TRBV20-1 Silent p.%3D 0.65 TCGA-P4-A5EB-01 7 48099881 48099882 - TATG C7orf57 3'UTR 0.49 TCGA-P4-A5EB-01 7 5104550 5104550 G - RBAK Frame_Shift_Del p.S488Mfs*19 0.27 TCGA-P4-A5EB-01 7 54612346 54612346 G - VSTM2A Frame_Shift_Del p.A38Rfs*64 0.25 TCGA-P4-A5EB-01 7 5781127 5781127 G C RNF216 Nonsense_Mutation p.S174* 0.51 TCGA-P4-A5EB-01 7 66774599 66774599 T G STAG3L4 RNA 0.37 TCGA-P4-A5EB-01 7 83739849 83739849 G A SEMA3A Silent p.Y130Y 0.04 TCGA-P4-A5EB-01 7 91632281 91632281 G A AKAP9 Missense_Mutation p.S1017N 0.58 benign(0.009) TCGA-P4-A5EB-01 7 99158261 99158261 C T ZNF655 Silent p.L27L 0.26 TCGA-P4-A5EB-01 8 104312293 104312293 T C FZD6 5'UTR 0.62 TCGA-P4-A5EB-01 8 113678545 113678545 T G CSMD3 Missense_Mutation p.E926A 0.63 tolerated(0.05) probably_damaging(0.999) TCGA-P4-A5EB-01 8 59060279 59060279 T G FAM110B 3'UTR 0.60 TCGA-P4-A5EB-01 8 68115315 68115315 T G ARFGEF1 Intron 0.51 TCGA-P4-A5EB-01 8 75932278 75932278 T A CRISPLD1 Missense_Mutation p.L403H 0.48 deleterious(0.01) probably_damaging(0.949) TCGA-P4-A5EB-01 8 86057651 86057651 G T LRRCC1 Nonsense_Mutation p.E1002* 0.27 TCGA-P4-A5EB-01 9 104302538 104302538 G C RNF20 Missense_Mutation p.M61I 0.63 tolerated(0.13) benign(0) TCGA-P4-A5EB-01 9 107573100 107573100 C G ABCA1 Missense_Mutation p.E1386Q 0.16 tolerated(0.88) benign(0.077) TCGA-P4-A5EB-01 9 136216489 136216489 C A RPL7A Missense_Mutation p.L70I 0.36 deleterious(0.01) benign(0.18) TCGA-P4-A5EB-01 9 21482028 21482028 G A IFNE 5'UTR 0.27 TCGA-P4-A5EB-01 9 26925951 26925951 C A PLAA Silent p.V247V 0.59 TCGA-P4-A5EB-01 9 35547875 35547875 G - RUSC2 Frame_Shift_Del p.V453Sfs*9 0.36 TCGA-P4-A5EB-01 9 35699091 35699097 CAGCTCC - TLN1 Frame_Shift_Del p.G2311Qfs*11 0.24 TCGA-P4-A5EB-01 9 35711276 35711276 T A TLN1 Missense_Mutation p.K1332M 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-P4-A5EB-01 9 35753010 35753010 T G MSMP 3'UTR 0.26 TCGA-P4-A5EB-01 9 38577964 38577964 T A ANKRD18A Missense_Mutation p.E810V 0.51 deleterious(0) possibly_damaging(0.822) TCGA-P4-A5EB-01 9 71869284 71869285 - T TJP2 Frame_Shift_Ins p.L1221Ffs*5 0.25 TCGA-P4-A5EB-01 X 32305751 32305751 G T DMD Missense_Mutation p.A2062E 0.96 possibly_damaging(0.765) TCGA-P4-A5EB-01 X 50658768 50658768 A T BMP15 Missense_Mutation p.I114L 0.95 tolerated(0.28) benign(0.018) TCGA-P4-A5EB-01 X 56592091 56592092 AA - UBQLN2 Frame_Shift_Del p.N596Pfs*2 0.50 TCGA-P4-A5EB-01 X 71800766 71800766 A C PHKA1 3'UTR 0.20 TCGA-P4-A5ED-01 11 123476178 123476178 C T GRAMD1B Missense_Mutation p.P296S 0.30 tolerated(0.08) benign(0.169) TCGA-P4-A5ED-01 12 111757856 111757856 C T CUX2 Silent p.N681N 0.09 TCGA-P4-A5ED-01 12 112096635 112096635 G A BRAP Nonsense_Mutation p.R376* 0.05 TCGA-P4-A5ED-01 12 9840539 9840539 C G CLEC2D Missense_Mutation p.Q72E 0.07 tolerated(0.33) benign(0.018) TCGA-P4-A5ED-01 14 81969202 81969202 C T SEL1L Missense_Mutation p.A214T 0.29 deleterious(0.02) possibly_damaging(0.58) TCGA-P4-A5ED-01 15 89398215 89398215 C T ACAN Missense_Mutation p.S800F 0.34 tolerated(0.23) benign(0.014) TCGA-P4-A5ED-01 17 72340927 72340927 C A KIF19 Silent p.R204R 0.28 TCGA-P4-A5ED-01 17 74878443 74878443 G A MGAT5B Intron 0.08 TCGA-P4-A5ED-01 1 114454514 114454514 C T DCLRE1B Missense_Mutation p.H434Y 0.13 tolerated_low_confidence(0.07) benign(0.188) TCGA-P4-A5ED-01 2 160139417 160139417 T C WDSUB1 Missense_Mutation p.Y55C 0.10 deleterious(0) probably_damaging(0.992) TCGA-P4-A5ED-01 2 42886918 42886918 C A MTA3 Missense_Mutation p.F206L 0.05 tolerated(0.08) probably_damaging(0.959) TCGA-P4-A5ED-01 4 85675021 85675021 T C WDFY3 Silent p.Q1856Q 0.26 TCGA-P4-A5ED-01 5 122154607 122154607 T G SNX2 Silent p.L367L 0.06 TCGA-P4-A5ED-01 6 2955761 2955761 G C SERPINB6 Silent p.L103L 0.10 TCGA-P4-A5ED-01 6 29976831 29976831 A G ZNRD1-AS1 RNA 0.21 TCGA-P4-A5ED-01 8 90967743 90967743 T C NBN Missense_Mutation p.M389V 0.33 tolerated(0.39) benign(0.001) TCGA-P4-A5ED-01 9 32633310 32633310 G A TAF1L Silent p.G756G 0.08 TCGA-P4-A5ED-01 X 106034465 106034465 G A RNF128 Splice_Site p.X385_splice 0.23 TCGA-P4-AAVL-01 10 13167963 13167963 T A OPTN Missense_Mutation p.L389Q 0.34 deleterious(0) probably_damaging(0.98) TCGA-P4-AAVL-01 10 64957243 64957243 A G JMJD1C Missense_Mutation p.W1858R 0.39 deleterious(0) probably_damaging(0.999) TCGA-P4-AAVL-01 10 73567274 73567274 C G CDH23 Silent p.A530A 0.42 TCGA-P4-AAVL-01 10 74899240 74899240 T C ECD Silent p.L449L 0.40 TCGA-P4-AAVL-01 11 47600315 47600315 T C KBTBD4 Intron 0.35 TCGA-P4-AAVL-01 11 47869930 47869930 C T NUP160 Missense_Mutation p.V15M 0.39 tolerated_low_confidence(0.22) possibly_damaging(0.861) TCGA-P4-AAVL-01 11 62520283 62520283 A T ZBTB3 Missense_Mutation p.V335D 0.37 tolerated(0.35) benign(0.001) TCGA-P4-AAVL-01 11 7662741 7662741 T C PPFIBP2 Silent p.A469A 0.32 TCGA-P4-AAVL-01 12 133219525 133219525 G A POLE Missense_Mutation p.L1537F 0.39 tolerated(0.44) possibly_damaging(0.595) TCGA-P4-AAVL-01 12 50744556 50744556 G A FAM186A Missense_Mutation p.T2020I 0.52 deleterious(0.04) probably_damaging(0.988) TCGA-P4-AAVL-01 12 51853759 51853759 A G SLC4A8 Missense_Mutation p.I294V 0.50 deleterious(0.03) benign(0.026) TCGA-P4-AAVL-01 12 62777661 62777667 AGCAGCA - USP15 Frame_Shift_Del p.Q378Tfs*6 0.31 TCGA-P4-AAVL-01 12 99837527 99837527 G A ANKS1B Missense_Mutation p.T500I 0.65 deleterious(0.01) probably_damaging(0.925) TCGA-P4-AAVL-01 13 23909168 23909168 A G SACS Silent p.I2949I 0.45 TCGA-P4-AAVL-01 13 23910741 23910741 C T SACS Missense_Mutation p.R2425Q 0.49 probably_damaging(0.992) TCGA-P4-AAVL-01 13 26975672 26975672 A T CDK8 Missense_Mutation p.S394C 0.41 deleterious(0.05) benign(0.219) TCGA-P4-AAVL-01 14 21543510 21543510 C - ARHGEF40 Frame_Shift_Del p.L492Cfs*35 0.28 TCGA-P4-AAVL-01 14 35579746 35579746 A G PPP2R3C Silent p.D92D 0.32 TCGA-P4-AAVL-01 14 77493405 77493405 C T IRF2BPL Missense_Mutation p.G244D 0.09 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-P4-AAVL-01 15 101602839 101602839 G T LRRK1 Missense_Mutation p.A1620S 0.40 tolerated(0.48) benign(0.101) TCGA-P4-AAVL-01 15 26793258 26793258 C - GABRB3 Frame_Shift_Del p.L369* 0.31 TCGA-P4-AAVL-01 15 41555021 41555022 - A CHP1 Frame_Shift_Ins p.S99Efs*25 0.25 TCGA-P4-AAVL-01 15 48623926 48623926 A G DUT Missense_Mutation p.T72A 0.19 tolerated_low_confidence(0.9) benign(0) TCGA-P4-AAVL-01 15 56935189 56935189 T C ZNF280D Silent p.K740K 0.39 TCGA-P4-AAVL-01 15 89010546 89010546 C T MRPL46 Silent p.R21R 0.46 TCGA-P4-AAVL-01 16 21652716 21652716 T C IGSF6 3'UTR 0.33 TCGA-P4-AAVL-01 16 48167669 48167669 C T ABCC12 Missense_Mutation p.V353M 0.34 tolerated(0.05) benign(0.36) TCGA-P4-AAVL-01 16 4933991 4933991 G C PPL Silent p.S1555S 0.48 TCGA-P4-AAVL-01 16 49672689 49672695 AGGTCAC GGG ZNF423 Frame_Shift_Del p.C123Sfs*27 0.12 TCGA-P4-AAVL-01 16 55719085 55719085 C T SLC6A2 Silent p.S225S 0.44 TCGA-P4-AAVL-01 16 613272 613272 G A C16orf11 5'UTR 0.35 TCGA-P4-AAVL-01 16 69967081 69967082 - C WWP2 Intron 0.24 TCGA-P4-AAVL-01 16 75563115 75563115 G A CHST5 Missense_Mutation p.R390C 0.48 deleterious(0) possibly_damaging(0.776) TCGA-P4-AAVL-01 16 89704613 89704613 T C DPEP1 Missense_Mutation p.C407R 0.30 tolerated_low_confidence(0.12) unknown(0) TCGA-P4-AAVL-01 16 9186850 9186850 T A C16orf72 Missense_Mutation p.L100H 0.38 deleterious(0) probably_damaging(0.961) TCGA-P4-AAVL-01 17 10441053 10441053 T A MYH2 Nonsense_Mutation p.K506* 0.47 TCGA-P4-AAVL-01 17 1540075 1540075 C T SCARF1 Missense_Mutation p.D521N 0.44 deleterious(0.04) benign(0.298) TCGA-P4-AAVL-01 17 40823573 40823573 G T PLEKHH3 Silent p.T360T 0.26 TCGA-P4-AAVL-01 17 41597598 41597598 T A DHX8 Missense_Mutation p.L967Q 0.25 deleterious(0) probably_damaging(1) TCGA-P4-AAVL-01 17 45925056 45925056 C G SP6 Missense_Mutation p.G247A 0.04 tolerated(1) benign(0.014) TCGA-P4-AAVL-01 17 68131394 68131394 T A KCNJ16 3'UTR 0.56 TCGA-P4-AAVL-01 17 72839426 72839426 G A GRIN2C Silent p.D950D 0.62 TCGA-P4-AAVL-01 17 8448780 8448780 A G MYH10 Missense_Mutation p.F473L 0.39 probably_damaging(0.99) TCGA-P4-AAVL-01 18 28968923 28968923 C T DSG4 Silent p.N153N 0.45 TCGA-P4-AAVL-01 19 12816127 12816127 T C TNPO2 Missense_Mutation p.E650G 0.41 deleterious(0) benign(0.323) TCGA-P4-AAVL-01 19 15288556 15288571 TGGCCTGGCAGGCGGC CGGT NOTCH3 In_Frame_Del p.A1390_K1395delinsTE 0.24 TCGA-P4-AAVL-01 19 15288571 15288571 C T NOTCH3 Missense_Mutation p.A1390T 0.35 tolerated(0.18) possibly_damaging(0.636) TCGA-P4-AAVL-01 19 16631603 16631604 - C C19orf44 3'UTR 0.27 TCGA-P4-AAVL-01 19 30934626 30934626 C T ZNF536 Missense_Mutation p.R53W 0.51 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-P4-AAVL-01 19 3527661 3527661 C G FZR1 Missense_Mutation p.T168S 0.35 tolerated(0.21) benign(0.005) TCGA-P4-AAVL-01 19 43762353 43762353 C - PSG9 Splice_Site p.X415_splice 0.30 TCGA-P4-AAVL-01 19 4512405 4512405 T G PLIN4 Missense_Mutation p.T509P 0.33 deleterious(0.02) probably_damaging(1) TCGA-P4-AAVL-01 1 115280171 115280171 A T CSDE1 Missense_Mutation p.V154D 0.41 deleterious(0.03) possibly_damaging(0.756) TCGA-P4-AAVL-01 1 120839624 120839624 G A FAM72B 5'UTR 0.06 TCGA-P4-AAVL-01 1 1235981 1235981 T C ACAP3 Missense_Mutation p.R144G 0.34 deleterious(0) possibly_damaging(0.843) TCGA-P4-AAVL-01 1 147580787 147580787 C A NBPF24 Missense_Mutation p.G669V 0.38 deleterious(0.04) probably_damaging(0.945) TCGA-P4-AAVL-01 1 157548316 157548316 T A FCRL4 Silent p.G459G 0.47 TCGA-P4-AAVL-01 1 35250656 35250656 G A GJB3 Missense_Mutation p.R98H 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-P4-AAVL-01 1 45797447 45797447 A G MUTYH Missense_Mutation p.F355L 0.39 deleterious(0.03) benign(0.118) TCGA-P4-AAVL-01 1 46088725 46088725 C A CCDC17 Silent p.L186L 0.51 TCGA-P4-AAVL-01 1 60370654 60370654 G - CYP2J2 Frame_Shift_Del p.Y361Tfs*18 0.24 TCGA-P4-AAVL-01 1 67816591 67816592 - TA IL12RB2 Frame_Shift_Ins p.Q361Ifs*3 0.28 TCGA-P4-AAVL-01 1 94939389 94939389 C A ABCD3 Missense_Mutation p.L135I 0.35 tolerated(0.46) benign(0.005) TCGA-P4-AAVL-01 1 99470261 99470266 GCGGGC - LPPR5 5'UTR 0.41 TCGA-P4-AAVL-01 20 10393727 10393727 T G MKKS Missense_Mutation p.S146R 0.43 tolerated(0.07) benign(0.182) TCGA-P4-AAVL-01 20 13273028 13273028 A G ISM1 Silent p.E265E 0.40 TCGA-P4-AAVL-01 22 16256577 16256577 T A POTEH 3'UTR 0.08 TCGA-P4-AAVL-01 22 46501743 46501744 CA - FLJ27365 Intron 0.39 TCGA-P4-AAVL-01 22 50721158 50721158 G A PLXNB2 Missense_Mutation p.P990L 0.47 deleterious(0) probably_damaging(1) TCGA-P4-AAVL-01 2 128389949 128389949 G C MYO7B Missense_Mutation p.C1767S 0.45 tolerated(0.11) possibly_damaging(0.582) TCGA-P4-AAVL-01 3 108094616 108094616 G T HHLA2 Missense_Mutation p.R376S 0.04 tolerated_low_confidence(0.61) benign(0) TCGA-P4-AAVL-01 3 124210171 124210171 C T KALRN Missense_Mutation p.T1528I 0.53 deleterious(0.05) benign(0.084) TCGA-P4-AAVL-01 3 129185869 129185869 G A IFT122 Missense_Mutation p.E285K 0.24 tolerated_low_confidence(0.54) benign(0.005) TCGA-P4-AAVL-01 3 54958819 54958819 G A LRTM1 Missense_Mutation p.T144I 0.48 tolerated(0.13) benign(0.113) TCGA-P4-AAVL-01 4 159812743 159812743 C G FNIP2 Missense_Mutation p.S1032C 0.44 tolerated(0.06) benign(0.067) TCGA-P4-AAVL-01 4 25759396 25759396 T A SEL1L3 Missense_Mutation p.N1034Y 0.36 deleterious(0.01) benign(0.143) TCGA-P4-AAVL-01 4 68934461 68934461 C A TMPRSS11F Missense_Mutation p.R210S 0.44 tolerated(0.76) benign(0.012) TCGA-P4-AAVL-01 4 99850301 99850301 G T EIF4E 5'Flank 0.07 TCGA-P4-AAVL-01 5 130791652 130791652 G C RAPGEF6 Missense_Mutation p.P973R 0.42 deleterious(0) probably_damaging(1) TCGA-P4-AAVL-01 5 132158324 132158324 G C SHROOM1 3'UTR 0.42 TCGA-P4-AAVL-01 5 140482079 140482079 G C PCDHB3 Missense_Mutation p.G616R 0.54 deleterious_low_confidence(0.04) benign(0.112) TCGA-P4-AAVL-01 5 80508362 80508362 T C RASGRF2 Missense_Mutation p.W1112R 0.44 deleterious(0) probably_damaging(1) TCGA-P4-AAVL-01 5 850729 850733 AGAAG - ZDHHC11 5'UTR 0.21 TCGA-P4-AAVL-01 6 128643228 128643228 G A PTPRK Missense_Mutation p.R151W 0.07 deleterious(0) possibly_damaging(0.66) TCGA-P4-AAVL-01 6 158882608 158882629 GTGGTGCACACAGGGGGACTTG - TULP4 Frame_Shift_Del p.Q291Hfs*22 0.35 TCGA-P4-AAVL-01 6 33365934 33365934 G A KIFC1 Silent p.E47E 0.46 TCGA-P4-AAVL-01 7 100304640 100304640 C T POP7 Nonsense_Mutation p.Q63* 0.34 TCGA-P4-AAVL-01 7 103474054 103474054 G C RELN Missense_Mutation p.H135D 0.18 deleterious(0.05) benign(0.091) TCGA-P4-AAVL-01 7 127725765 127725765 A G SND1 Missense_Mutation p.Y746C 0.12 deleterious(0) probably_damaging(1) TCGA-P4-AAVL-01 7 131864511 131864511 G A PLXNA4 Missense_Mutation p.T1270M 0.20 deleterious(0) probably_damaging(0.994) TCGA-P4-AAVL-01 7 148801369 148801369 C T ZNF425 Missense_Mutation p.G532S 0.20 tolerated(0.39) possibly_damaging(0.654) TCGA-P4-AAVL-01 7 149518600 149518600 C T SSPO RNA 0.38 TCGA-P4-AAVL-01 7 150417295 150417295 C T GIMAP1 Missense_Mutation p.T68M 0.19 tolerated(0.12) benign(0.028) TCGA-P4-AAVL-01 7 39446326 39446326 A T POU6F2 Missense_Mutation p.N338I 0.19 deleterious(0) unknown(0) TCGA-P4-AAVL-01 7 5352473 5352476 ATCG - TNRC18 Frame_Shift_Del p.D2682Efs*118 0.44 TCGA-P4-AAVL-01 7 93090260 93090267 CTGGAAGA T CALCR Splice_Site p.X208_splice 0.16 TCGA-P4-AAVL-01 7 93551174 93551174 A G GNG11 5'UTR 0.29 TCGA-P4-AAVL-01 7 96810419 96810420 - A ACN9 Frame_Shift_Ins p.N91Kfs*2 0.40 TCGA-P4-AAVL-01 8 22880068 22880068 T A TNFRSF10B 3'UTR 0.39 TCGA-P4-AAVL-01 8 37693093 37693093 A G GPR124 Missense_Mutation p.I619V 0.38 tolerated(0.43) benign(0.009) TCGA-P4-AAVL-01 9 130159467 130159467 C A SLC2A8 5'UTR 0.30 TCGA-P4-AAVL-01 9 135975749 135975749 A C RALGDS Silent p.A825A 0.39 TCGA-P4-AAVL-01 9 141070094 141070094 C G TUBBP5 RNA 0.40 TCGA-P4-AAVL-01 9 33467705 33467705 C T NOL6 Missense_Mutation p.R529Q 0.52 tolerated(0.37) benign(0.169) TCGA-P4-AAVL-01 9 71396552 71396553 - TT FAM122A 3'UTR 0.42 TCGA-P4-AAVL-01 9 71628443 71628443 G A PRKACG Missense_Mutation p.A189V 0.38 deleterious(0) probably_damaging(0.957) TCGA-P4-AAVL-01 X 151821371 151821371 G A GABRQ Missense_Mutation p.R509H 0.83 deleterious(0.01) benign(0) TCGA-P4-AAVL-01 X 49022721 49022721 G A MAGIX Missense_Mutation p.G330R 0.14 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-P4-AAVM-01 10 21785735 21785735 C T CASC10 Silent p.S3S 0.13 TCGA-P4-AAVM-01 11 3380399 3380399 T C ZNF195 Silent p.K613K 0.49 TCGA-P4-AAVM-01 11 36511217 36511217 A T TRAF6 3'UTR 0.32 TCGA-P4-AAVM-01 11 67800585 67800585 C A NDUFS8 Silent p.G69G 0.39 TCGA-P4-AAVM-01 11 86125892 86125892 A C CCDC81 Silent p.R485R 0.36 TCGA-P4-AAVM-01 12 42854000 42854000 G A PRICKLE1 Silent p.L703L 0.43 TCGA-P4-AAVM-01 12 54403214 54403214 T A HOXC8 Missense_Mutation p.F49Y 0.39 tolerated(0.13) benign(0.411) TCGA-P4-AAVM-01 13 103338655 103338656 - C METTL21C Frame_Shift_Ins p.E174Gfs*15 0.29 TCGA-P4-AAVM-01 13 32907282 32907282 A G BRCA2 Missense_Mutation p.N556S 0.41 tolerated(1) benign(0.01) TCGA-P4-AAVM-01 14 67389401 67389401 C T GPHN Silent p.L159L 0.07 TCGA-P4-AAVM-01 14 78184510 78184510 T C SNW1 Missense_Mutation p.H511R 0.39 tolerated(0.52) benign(0.001) TCGA-P4-AAVM-01 15 74315345 74315345 A C PML Missense_Mutation p.Q260P 0.28 deleterious(0.02) possibly_damaging(0.868) TCGA-P4-AAVM-01 16 15110996 15110996 G A PDXDC1 Missense_Mutation p.A278T 0.28 tolerated(0.17) possibly_damaging(0.895) TCGA-P4-AAVM-01 16 30122734 30122736 AGA - GDPD3 In_Frame_Del p.F227del 0.60 TCGA-P4-AAVM-01 16 74491772 74491772 G A GLG1 Nonsense_Mutation p.Q1089* 0.62 TCGA-P4-AAVM-01 16 81965133 81965133 C G PLCG2 Silent p.S871S 0.07 TCGA-P4-AAVM-01 17 33288575 33288575 T C ZNF830 5'UTR 0.36 TCGA-P4-AAVM-01 17 42476063 42476063 G A GPATCH8 Nonsense_Mutation p.Q1128* 0.46 TCGA-P4-AAVM-01 17 45299172 45299172 C T MYL4 Silent p.S146S 0.32 TCGA-P4-AAVM-01 17 56621619 56621619 C T C17orf47 5'UTR 0.50 TCGA-P4-AAVM-01 17 65916183 65916183 T C BPTF Silent p.V1827V 0.34 TCGA-P4-AAVM-01 17 74449137 74449137 G A UBE2O Silent p.A29A 0.49 TCGA-P4-AAVM-01 19 49316726 49316726 C G HSD17B14 Missense_Mutation p.G209A 0.29 tolerated(0.37) benign(0.159) TCGA-P4-AAVM-01 19 52663822 52663822 A T ZNF836 Missense_Mutation p.V13E 0.31 deleterious(0) possibly_damaging(0.481) TCGA-P4-AAVM-01 19 6760717 6760717 C A SH2D3A Missense_Mutation p.Q117H 0.39 tolerated(0.11) benign(0.002) TCGA-P4-AAVM-01 1 10420986 10420986 G A KIF1B Splice_Site p.X1306_splice 0.05 TCGA-P4-AAVM-01 1 110607426 110607426 C A ALX3 Missense_Mutation p.G126V 0.39 deleterious(0.03) benign(0.218) TCGA-P4-AAVM-01 1 145441173 145441173 C G TXNIP Intron 0.30 TCGA-P4-AAVM-01 1 155308132 155308132 G A ASH1L Nonsense_Mutation p.Q2851* 0.12 TCGA-P4-AAVM-01 1 196879470 196879470 C T CFHR4 Missense_Mutation p.R286C 0.41 tolerated(0.17) possibly_damaging(0.831) TCGA-P4-AAVM-01 1 206318340 206318340 A T CTSE Missense_Mutation p.K33M 0.40 deleterious(0) benign(0.231) TCGA-P4-AAVM-01 1 28149042 28149042 C T STX12 3'UTR 0.55 TCGA-P4-AAVM-01 1 32560492 32560492 C T TMEM39B Silent p.D345D 0.35 TCGA-P4-AAVM-01 1 9658629 9658629 C G TMEM201 Silent p.A184A 0.33 TCGA-P4-AAVM-01 20 20226857 20226857 C T C20orf26 Silent p.S719S 0.31 TCGA-P4-AAVM-01 21 30505724 30505724 A G MAP3K7CL Intron 0.46 TCGA-P4-AAVM-01 22 22024222 22024222 A T PPIL2 Missense_Mutation p.Y18F 0.48 deleterious(0) benign(0.311) TCGA-P4-AAVM-01 2 114670788 114670788 G T ACTR3 Missense_Mutation p.Q28H 0.35 deleterious(0.01) probably_damaging(0.955) TCGA-P4-AAVM-01 2 174987981 174987981 A C OLA1 Missense_Mutation p.F219V 0.27 deleterious(0.01) probably_damaging(0.949) TCGA-P4-AAVM-01 2 178977240 178977240 G A RBM45 5'UTR 0.35 TCGA-P4-AAVM-01 2 192227007 192227007 T C MYO1B Silent p.L225L 0.38 TCGA-P4-AAVM-01 2 197183634 197183634 G T HECW2 Nonsense_Mutation p.C660* 0.08 TCGA-P4-AAVM-01 2 27301793 27301793 G C EMILIN1 5'UTR 0.40 TCGA-P4-AAVM-01 2 74707970 74707970 A C CCDC142 Missense_Mutation p.S470A 0.36 tolerated(0.13) benign(0.343) TCGA-P4-AAVM-01 2 85554322 85554322 A T TGOLN2 Missense_Mutation p.V178D 0.44 tolerated(0.97) benign(0) TCGA-P4-AAVM-01 3 121289566 121289566 G A ARGFX Silent p.R2R 0.59 TCGA-P4-AAVM-01 3 13860792 13860792 G A WNT7A Silent p.N233N 0.40 TCGA-P4-AAVM-01 3 15457058 15457058 G C METTL6 Intron 0.42 TCGA-P4-AAVM-01 3 164783068 164783068 C T SI Missense_Mutation p.R263Q 0.54 deleterious(0.01) possibly_damaging(0.818) TCGA-P4-AAVM-01 3 44777999 44777999 A G ZNF501 3'UTR 0.50 TCGA-P4-AAVM-01 4 119674015 119674015 G C SEC24D Missense_Mutation p.R484G 0.41 deleterious(0) probably_damaging(0.941) TCGA-P4-AAVM-01 4 186324652 186324652 T C UFSP2 Missense_Mutation p.E440G 0.46 tolerated(0.07) benign(0.029) TCGA-P4-AAVM-01 4 69056912 69056912 C G TMPRSS11BNL 3'UTR 0.43 TCGA-P4-AAVM-01 5 140890952 140890952 G T PCDHGB6 3'UTR 0.54 TCGA-P4-AAVM-01 5 16711299 16711299 A G MYO10 Missense_Mutation p.M662T 0.34 deleterious(0) probably_damaging(0.968) TCGA-P4-AAVM-01 5 72857114 72857114 C T ANKRA2 Splice_Site p.X97_splice 0.36 TCGA-P4-AAVM-01 5 79854309 79854309 T G ANKRD34B Missense_Mutation p.Q510H 0.39 deleterious(0) probably_damaging(0.999) TCGA-P4-AAVM-01 6 162864397 162864397 T A PARK2 Missense_Mutation p.D39V 0.42 deleterious(0.01) probably_damaging(0.976) TCGA-P4-AAVM-01 6 162864398 162864398 C T PARK2 Missense_Mutation p.D39N 0.40 deleterious(0.01) probably_damaging(0.936) TCGA-P4-AAVM-01 6 62390941 62390941 C T KHDRBS2 Missense_Mutation p.R326H 0.11 deleterious(0.02) possibly_damaging(0.482) TCGA-P4-AAVM-01 7 1733084 1733084 G T AC074389.6 Missense_Mutation p.L150I 0.10 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-P4-AAVM-01 7 44091488 44091488 T A DBNL Missense_Mutation p.C67S 0.58 deleterious(0) probably_damaging(0.975) TCGA-P4-AAVM-01 7 47342974 47342974 G C TNS3 Missense_Mutation p.L1011V 0.48 tolerated(0.27) benign(0.005) TCGA-P4-AAVM-01 7 48390271 48390271 A T ABCA13 Silent p.A3412A 0.45 TCGA-P4-AAVM-01 8 144997632 144997632 C G PLEC Silent p.A2292A 0.43 TCGA-P4-AAVM-01 8 30651547 30651547 T A PPP2CB Silent p.G208G 0.09 TCGA-P4-AAVM-01 8 96167020 96167020 T A PLEKHF2 Nonstop_Mutation p.*250Kext*32 0.14 TCGA-P4-AAVM-01 9 101546300 101546300 G A ANKS6 Silent p.H349H 0.37 TCGA-P4-AAVM-01 9 101552742 101552742 A G ANKS6 Missense_Mutation p.F169S 0.39 tolerated(0.12) benign(0.026) TCGA-P4-AAVM-01 9 131669737 131669737 G C LRRC8A Missense_Mutation p.K98N 0.45 deleterious(0.03) benign(0.038) TCGA-P4-AAVM-01 9 131669746 131669746 G A LRRC8A Silent p.L101L 0.42 TCGA-P4-AAVM-01 9 139656704 139656704 G C LCN15 Silent p.S152S 0.45 TCGA-P4-AAVM-01 9 139656705 139656705 G C LCN15 Missense_Mutation p.S152C 0.45 deleterious(0.01) benign(0.013) TCGA-P4-AAVM-01 9 139694196 139694196 G T CCDC183 Missense_Mutation p.G75V 0.41 tolerated(0.08) possibly_damaging(0.733) TCGA-P4-AAVM-01 9 71144606 71144606 A G PGM5 3'UTR 0.41 TCGA-P4-AAVM-01 9 95784642 95784642 A G FGD3 Missense_Mutation p.T510A 0.43 tolerated(0.78) benign(0) TCGA-PJ-A5Z8-01 10 101421214 101421214 C A ENTPD7 Missense_Mutation p.S7Y 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.533) TCGA-PJ-A5Z8-01 10 101715503 101715503 G T DNMBP Missense_Mutation p.H576Q 0.14 tolerated_low_confidence(0.07) benign(0.057) TCGA-PJ-A5Z8-01 10 104590667 104590667 C T CYP17A1 Missense_Mutation p.R440H 0.20 deleterious(0) probably_damaging(1) TCGA-PJ-A5Z8-01 10 104592776 104592776 G T CYP17A1 Missense_Mutation p.L315M 0.22 deleterious(0.01) possibly_damaging(0.588) TCGA-PJ-A5Z8-01 10 121212789 121212789 G A GRK5 Splice_Site p.X558_splice 0.16 TCGA-PJ-A5Z8-01 10 61833342 61833342 C A ANK3 Missense_Mutation p.D2433Y 0.17 possibly_damaging(0.552) TCGA-PJ-A5Z8-01 10 75185982 75185982 C T MSS51 Missense_Mutation p.G219E 0.13 deleterious(0.05) benign(0.062) TCGA-PJ-A5Z8-01 11 111952579 111952579 T G C11orf57 Intron 0.33 TCGA-PJ-A5Z8-01 11 18195097 18195097 C T MRGPRX4 Silent p.L98L 0.17 TCGA-PJ-A5Z8-01 11 284253 284253 A G NLRP6 Missense_Mutation p.D742G 0.29 tolerated(0.19) benign(0.355) TCGA-PJ-A5Z8-01 11 3789956 3789956 G - NUP98 Frame_Shift_Del p.T268Kfs*41 0.18 TCGA-PJ-A5Z8-01 11 47839605 47839605 G T NUP160 Intron 0.14 TCGA-PJ-A5Z8-01 11 63283171 63283171 C A LGALS12 Missense_Mutation p.Q285K 0.17 tolerated(0.23) benign(0.018) TCGA-PJ-A5Z8-01 11 68181318 68181318 G T LRP5 Missense_Mutation p.V889L 0.32 deleterious(0.01) possibly_damaging(0.453) TCGA-PJ-A5Z8-01 12 113610195 113610195 G A DDX54 Silent p.S414S 0.34 TCGA-PJ-A5Z8-01 12 56217194 56217194 C G DNAJC14 Missense_Mutation p.E502D 0.17 tolerated(0.09) benign(0.369) TCGA-PJ-A5Z8-01 12 57346721 57346721 A - RDH16 Frame_Shift_Del p.F209Sfs*5 0.35 TCGA-PJ-A5Z8-01 12 6090996 6090996 T G VWF Missense_Mutation p.T2415P 0.19 deleterious(0) possibly_damaging(0.86) TCGA-PJ-A5Z8-01 12 62954348 62954349 - T MON2 Frame_Shift_Ins p.A1164Gfs*21 0.17 TCGA-PJ-A5Z8-01 14 105936238 105936239 - G MTA1 Frame_Shift_Ins p.S639Lfs*18 0.19 TCGA-PJ-A5Z8-01 14 105962371 105962371 C T C14orf80 Intron 0.38 TCGA-PJ-A5Z8-01 14 45693181 45693181 C T MIS18BP1 Missense_Mutation p.C870Y 0.25 tolerated(0.6) benign(0.017) TCGA-PJ-A5Z8-01 14 64989255 64989256 - T ZBTB1 Frame_Shift_Ins p.K346* 0.17 TCGA-PJ-A5Z8-01 15 74281093 74281093 A G STOML1 Silent p.F147F 0.20 TCGA-PJ-A5Z8-01 15 75111060 75111060 G T LMAN1L Missense_Mutation p.D167Y 0.37 deleterious(0.03) benign(0.295) TCGA-PJ-A5Z8-01 15 93007416 93007416 T A ST8SIA2 Missense_Mutation p.I310N 0.24 probably_damaging(0.999) TCGA-PJ-A5Z8-01 15 93007417 93007417 C T ST8SIA2 Silent p.I310I 0.24 TCGA-PJ-A5Z8-01 16 31471290 31471290 G T ARMC5 Missense_Mutation p.V149L 0.16 deleterious(0) probably_damaging(0.995) TCGA-PJ-A5Z8-01 16 50583404 50583404 C T NKD1 Missense_Mutation p.P44S 0.25 tolerated(0.25) possibly_damaging(0.558) TCGA-PJ-A5Z8-01 16 58079023 58079023 G C MMP15 Missense_Mutation p.E561D 0.31 tolerated(0.49) benign(0.424) TCGA-PJ-A5Z8-01 16 74447559 74447559 A T CLEC18B Missense_Mutation p.S158T 0.09 tolerated(0.21) benign(0.277) TCGA-PJ-A5Z8-01 17 10558280 10558281 GG - MYH3 Frame_Shift_Del p.A34Efs*31 0.19 TCGA-PJ-A5Z8-01 17 13980321 13980321 A G COX10 Silent p.Q149Q 0.16 TCGA-PJ-A5Z8-01 17 19449787 19449787 T C SLC47A1 Missense_Mutation p.S93P 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-PJ-A5Z8-01 17 35602012 35602012 G T ACACA Missense_Mutation p.P860H 0.22 deleterious(0) probably_damaging(0.999) TCGA-PJ-A5Z8-01 17 48539795 48539795 C G ACSF2 Missense_Mutation p.T214S 0.14 tolerated(0.15) benign(0.044) TCGA-PJ-A5Z8-01 17 60753774 60753774 C A MRC2 Silent p.I572I 0.20 TCGA-PJ-A5Z8-01 17 62855782 62855782 A T LRRC37A3 Silent p.I1494I 0.21 TCGA-PJ-A5Z8-01 17 7147902 7147902 A G CTDNEP1 Silent p.L214L 0.28 TCGA-PJ-A5Z8-01 17 7794342 7794342 C G CHD3 Missense_Mutation p.H216D 0.23 probably_damaging(0.929) TCGA-PJ-A5Z8-01 18 13826448 13826448 G A MC5R Silent p.A228A 0.23 TCGA-PJ-A5Z8-01 18 21508155 21508158 GATT - LAMA3 Frame_Shift_Del p.L2750Mfs*6 0.24 TCGA-PJ-A5Z8-01 18 8638331 8638331 T G RAB12 3'UTR 0.18 TCGA-PJ-A5Z8-01 19 55591878 55591878 C G EPS8L1 Intron 0.17 TCGA-PJ-A5Z8-01 19 56274066 56274066 A C RFPL4A Missense_Mutation p.Q130P 0.12 tolerated(0.21) benign(0.392) TCGA-PJ-A5Z8-01 1 145567075 145567075 C T ANKRD35 Missense_Mutation p.H975Y 0.25 deleterious(0.02) benign(0.132) TCGA-PJ-A5Z8-01 1 201252710 201252710 A G PKP1 5'UTR 0.22 TCGA-PJ-A5Z8-01 1 201285751 201285751 G A PKP1 Missense_Mutation p.D258N 0.26 tolerated(0.07) benign(0.227) TCGA-PJ-A5Z8-01 1 226075306 226075306 G T LEFTY1 Missense_Mutation p.A177D 0.28 tolerated(0.39) benign(0.005) TCGA-PJ-A5Z8-01 1 229730727 229730727 C T TAF5L Missense_Mutation p.D363N 0.06 deleterious(0) probably_damaging(1) TCGA-PJ-A5Z8-01 1 27101241 27101241 A G ARID1A Missense_Mutation p.Y1508C 0.28 unknown(0) TCGA-PJ-A5Z8-01 1 27190859 27190859 C T SFN 3'UTR 0.20 TCGA-PJ-A5Z8-01 20 33603843 33603844 - AA TRPC4AP Frame_Shift_Ins p.H440Ffs*16 0.21 TCGA-PJ-A5Z8-01 20 43090732 43090732 A G C20orf62 Silent p.S102S 0.25 TCGA-PJ-A5Z8-01 21 43241557 43241557 C T PRDM15 Silent p.L1008L 0.23 TCGA-PJ-A5Z8-01 22 42536651 42536651 C T NDUFA6-AS1 3'Flank 0.18 TCGA-PJ-A5Z8-01 22 50716444 50716444 T C PLXNB2 Splice_Site p.X1630_splice 0.13 TCGA-PJ-A5Z8-01 2 113330280 113330285 CCAATG - POLR1B In_Frame_Del p.N740_A741del 0.13 TCGA-PJ-A5Z8-01 2 172333421 172333421 T A DCAF17 Silent p.S381S 0.19 TCGA-PJ-A5Z8-01 2 190437577 190437577 C A SLC40A1 Missense_Mutation p.V128F 0.21 tolerated(0.3) benign(0.101) TCGA-PJ-A5Z8-01 2 191795284 191795284 A G GLS Missense_Mutation p.H516R 0.27 tolerated(0.17) benign(0.005) TCGA-PJ-A5Z8-01 2 197791195 197791195 T A PGAP1 Missense_Mutation p.Q49L 0.17 tolerated(0.2) benign(0.001) TCGA-PJ-A5Z8-01 2 201438489 201438489 T G SGOL2 Silent p.S1140S 0.19 TCGA-PJ-A5Z8-01 2 37286106 37286107 - A HEATR5B Frame_Shift_Ins p.C625Lfs*3 0.21 TCGA-PJ-A5Z8-01 2 50149057 50149057 C A NRXN1 3'UTR 0.15 TCGA-PJ-A5Z8-01 2 69207170 69207170 A G GKN1 Silent p.T161T 0.19 TCGA-PJ-A5Z8-01 2 73447218 73447218 A G SMYD5 Missense_Mutation p.E82G 0.21 deleterious(0.04) benign(0.027) TCGA-PJ-A5Z8-01 2 86371928 86371928 C A IMMT Missense_Mutation p.M580I 0.31 tolerated(0.5) benign(0.029) TCGA-PJ-A5Z8-01 3 121613309 121613309 A G SLC15A2 5'UTR 0.28 TCGA-PJ-A5Z8-01 3 128993744 128993744 G T COPG1 Missense_Mutation p.A774S 0.20 tolerated(0.46) benign(0.017) TCGA-PJ-A5Z8-01 3 128993745 128993745 C A COPG1 Missense_Mutation p.A774E 0.20 tolerated(0.25) benign(0.025) TCGA-PJ-A5Z8-01 3 184612489 184612503 AGGGATCTTTTATTT - VPS8 Splice_Site p.X594_splice 0.29 TCGA-PJ-A5Z8-01 4 100129912 100129912 T A ADH6 Missense_Mutation p.L247F 0.24 tolerated(1) benign(0.014) TCGA-PJ-A5Z8-01 4 113568519 113568519 C A LARP7 Missense_Mutation p.Q278K 0.11 tolerated(1) benign(0.164) TCGA-PJ-A5Z8-01 4 141543312 141543312 C G TBC1D9 3'UTR 0.17 TCGA-PJ-A5Z8-01 4 37447184 37447184 G A KIAA1239 Missense_Mutation p.V1192M 0.28 deleterious(0.01) probably_damaging(0.933) TCGA-PJ-A5Z8-01 4 83276449 83276449 G T HNRNPD Intron 0.20 TCGA-PJ-A5Z8-01 4 84240579 84240579 C G HPSE Missense_Mutation p.K139N 0.16 tolerated(0.19) benign(0.002) TCGA-PJ-A5Z8-01 4 94436380 94436380 C T GRID2 Missense_Mutation p.L671F 0.18 deleterious(0) probably_damaging(1) TCGA-PJ-A5Z8-01 5 140233324 140233324 C A PCDHA9 Intron 0.06 TCGA-PJ-A5Z8-01 5 176940458 176940458 C G DDX41 Missense_Mutation p.A376P 0.22 deleterious(0) possibly_damaging(0.9) TCGA-PJ-A5Z8-01 5 21751876 21751876 T - CDH12 Frame_Shift_Del p.E786Rfs*59 0.20 TCGA-PJ-A5Z8-01 5 75902074 75902074 G A IQGAP2 Missense_Mutation p.E435K 0.21 deleterious(0.04) possibly_damaging(0.67) TCGA-PJ-A5Z8-01 6 18218101 18218101 C - KDM1B Frame_Shift_Del p.F560Sfs*19 0.17 TCGA-PJ-A5Z8-01 6 97053903 97053904 TG - FHL5 Frame_Shift_Del p.C154Ffs*2 0.17 TCGA-PJ-A5Z8-01 7 149518182 149518182 C T SSPO RNA 0.19 TCGA-PJ-A5Z8-01 7 151919708 151919708 T - KMT2C Frame_Shift_Del p.D1128Afs*29 0.14 TCGA-PJ-A5Z8-01 7 26894415 26894415 A G SKAP2 Silent p.D54D 0.18 TCGA-PJ-A5Z8-01 7 43484075 43484075 C A HECW1 Missense_Mutation p.P435H 0.20 deleterious_low_confidence(0.01) benign(0.221) TCGA-PJ-A5Z8-01 7 48563956 48563956 A C ABCA13 Missense_Mutation p.N4722H 0.21 benign(0.08) TCGA-PJ-A5Z8-01 8 132996502 132996502 T G EFR3A Missense_Mutation p.N564K 0.20 deleterious(0.02) possibly_damaging(0.596) TCGA-PJ-A5Z8-01 8 133041425 133041425 A T OC90 Missense_Mutation p.C345S 0.15 deleterious(0) probably_damaging(0.969) TCGA-PJ-A5Z8-01 8 133041426 133041426 C T OC90 Silent p.R344R 0.15 TCGA-PJ-A5Z8-01 8 77616299 77616299 A C ZFHX4 5'UTR 0.20 TCGA-PJ-A5Z8-01 8 77616306 77616306 C T ZFHX4 5'UTR 0.18 TCGA-PJ-A5Z8-01 8 90936735 90936736 - T OSGIN2 Frame_Shift_Ins p.G211Rfs*14 0.13 TCGA-PJ-A5Z9-01 10 104474033 104474033 C T ARL3 5'UTR 0.32 TCGA-PJ-A5Z9-01 10 12160902 12160902 T C DHTKD1 Missense_Mutation p.Y853H 0.39 deleterious(0.01) probably_damaging(0.967) TCGA-PJ-A5Z9-01 10 50820491 50820491 C A SLC18A3 3'UTR 0.36 TCGA-PJ-A5Z9-01 10 61829169 61829169 C T ANK3 Missense_Mutation p.V3824M 0.41 benign(0.003) TCGA-PJ-A5Z9-01 10 88703695 88703695 G A MMRN2 Silent p.A282A 0.43 TCGA-PJ-A5Z9-01 10 99160073 99160073 C T RRP12 Missense_Mutation p.A120T 0.27 tolerated(0.18) benign(0.002) TCGA-PJ-A5Z9-01 11 2937874 2937874 G T SLC22A18 Missense_Mutation p.A187S 0.39 deleterious(0.03) possibly_damaging(0.725) TCGA-PJ-A5Z9-01 11 35454107 35454107 G A PAMR1 Missense_Mutation p.P671S 0.51 deleterious(0) benign(0.018) TCGA-PJ-A5Z9-01 11 67120525 67120525 C T POLD4 Missense_Mutation p.E41K 0.05 tolerated(0.87) benign(0.004) TCGA-PJ-A5Z9-01 12 57894254 57894254 G C MARS Silent p.R414R 0.23 TCGA-PJ-A5Z9-01 12 7295575 7295575 G C CLSTN3 Missense_Mutation p.E551Q 0.58 deleterious(0) probably_damaging(0.992) TCGA-PJ-A5Z9-01 12 8023590 8023590 T C SLC2A14 5'UTR 0.60 TCGA-PJ-A5Z9-01 13 108883188 108883188 C A ABHD13 3'UTR 0.38 TCGA-PJ-A5Z9-01 13 35770159 35770159 G T NBEA Missense_Mutation p.G1696C 0.52 deleterious_low_confidence(0) possibly_damaging(0.469) TCGA-PJ-A5Z9-01 15 40056080 40056080 C T FSIP1 Silent p.E167E 0.41 TCGA-PJ-A5Z9-01 15 41689069 41689069 G A NDUFAF1 Silent p.H63H 0.40 TCGA-PJ-A5Z9-01 15 44855441 44855441 A T SPG11 Missense_Mutation p.Y2404N 0.41 deleterious(0.02) benign(0.013) TCGA-PJ-A5Z9-01 15 90167321 90167321 G A TICRR Silent p.T1260T 0.43 TCGA-PJ-A5Z9-01 16 10273887 10273887 G C GRIN2A Missense_Mutation p.H128D 0.27 tolerated(0.17) benign(0.133) TCGA-PJ-A5Z9-01 16 90072805 90072805 G T DBNDD1 Missense_Mutation p.P159T 0.26 tolerated_low_confidence(0.08) benign(0.015) TCGA-PJ-A5Z9-01 17 26912886 26912886 T C SPAG5 Missense_Mutation p.D579G 0.60 deleterious(0.01) probably_damaging(0.968) TCGA-PJ-A5Z9-01 17 32598887 32598887 T G CCL7 3'UTR 0.35 TCGA-PJ-A5Z9-01 17 39658844 39658844 T C KRT13 Silent p.K342K 0.29 TCGA-PJ-A5Z9-01 17 39671004 39671004 A T KRT15 Intron 0.60 TCGA-PJ-A5Z9-01 17 5286568 5286568 T G RABEP1 3'UTR 0.27 TCGA-PJ-A5Z9-01 17 7727530 7727530 A T DNAH2 Missense_Mutation p.H3857L 0.56 benign(0.065) TCGA-PJ-A5Z9-01 18 43316457 43316458 - A SLC14A1 Frame_Shift_Ins p.W227Mfs*46 0.28 TCGA-PJ-A5Z9-01 18 74091620 74091620 C G ZNF516 Missense_Mutation p.G817A 0.39 deleterious(0) probably_damaging(0.999) TCGA-PJ-A5Z9-01 19 36230984 36230986 CGG - IGFLR1 In_Frame_Del p.P116del 0.30 TCGA-PJ-A5Z9-01 19 53887113 53887113 T A ZNF525 3'UTR 0.45 TCGA-PJ-A5Z9-01 19 8038748 8038748 G A ELAVL1 Silent p.R97R 0.18 TCGA-PJ-A5Z9-01 19 9077779 9077779 T G MUC16 Missense_Mutation p.T3223P 0.29 unknown(0) TCGA-PJ-A5Z9-01 1 101387350 101387350 A G SLC30A7 Missense_Mutation p.I265M 0.36 deleterious(0.04) probably_damaging(0.99) TCGA-PJ-A5Z9-01 1 153955913 153955913 C G RAB13 Intron 0.59 TCGA-PJ-A5Z9-01 1 159888918 159888918 T A TAGLN2 Intron 0.26 TCGA-PJ-A5Z9-01 1 161559585 161559585 C T RP11-25K21.6 Intron 0.16 TCGA-PJ-A5Z9-01 1 222803477 222803477 A - MIA3 Frame_Shift_Del p.V974Sfs*2 0.30 TCGA-PJ-A5Z9-01 1 234743060 234743060 G A IRF2BP2 Silent p.F529F 0.39 TCGA-PJ-A5Z9-01 1 27480852 27480855 CCTT - SLC9A1 5'UTR 0.30 TCGA-PJ-A5Z9-01 1 31769614 31769614 C T SNRNP40 5'UTR 0.48 TCGA-PJ-A5Z9-01 1 36552574 36552574 C T TEKT2 Silent p.N225N 0.37 TCGA-PJ-A5Z9-01 1 47101445 47101445 G - ATPAF1 3'UTR 0.30 TCGA-PJ-A5Z9-01 1 59247631 59247631 G T JUN 3'UTR 0.43 TCGA-PJ-A5Z9-01 1 67519574 67519574 C A SLC35D1 Silent p.L41L 0.31 TCGA-PJ-A5Z9-01 1 75037280 75037280 C A C1orf173 Missense_Mutation p.A1372S 0.38 deleterious(0.01) benign(0.254) TCGA-PJ-A5Z9-01 1 78194350 78194350 T C USP33 Silent p.E286E 0.43 TCGA-PJ-A5Z9-01 1 94546179 94546179 G A ABCA4 Silent p.I318I 0.31 TCGA-PJ-A5Z9-01 20 2592879 2592879 C G TMC2 Missense_Mutation p.L546V 0.12 tolerated(0.2) benign(0.271) TCGA-PJ-A5Z9-01 20 3869791 3869791 C T PANK2 Missense_Mutation p.A15V 0.32 tolerated_low_confidence(0.4) benign(0) TCGA-PJ-A5Z9-01 20 57009683 57009684 - C VAPB Frame_Shift_Ins p.N81Qfs*2 0.22 TCGA-PJ-A5Z9-01 21 31874285 31874285 C T KRTAP19-5 Missense_Mutation p.G42R 0.72 tolerated_low_confidence(0.68) unknown(0) TCGA-PJ-A5Z9-01 22 42289217 42289217 T - SREBF2 Frame_Shift_Del p.F770Sfs*8 0.28 TCGA-PJ-A5Z9-01 2 141771172 141771172 C A LRP1B Missense_Mutation p.R778I 0.22 benign(0.308) TCGA-PJ-A5Z9-01 2 219536685 219536685 C G RNF25 Silent p.A3A 0.64 TCGA-PJ-A5Z9-01 2 219537520 219537520 T A STK36 5'UTR 0.29 TCGA-PJ-A5Z9-01 2 28615791 28615791 G T FOSL2 5'UTR 0.37 TCGA-PJ-A5Z9-01 3 185542743 185542743 C G IGF2BP2 Missense_Mutation p.M2I 0.19 deleterious(0) probably_damaging(0.943) TCGA-PJ-A5Z9-01 3 49759370 49759370 C T GMPPB Missense_Mutation p.E327K 0.61 tolerated_low_confidence(0.37) benign(0.001) TCGA-PJ-A5Z9-01 3 49847782 49847782 A T UBA7 Missense_Mutation p.L516Q 0.59 deleterious(0) probably_damaging(0.998) TCGA-PJ-A5Z9-01 3 53913972 53913972 T C ACTR8 Silent p.G96G 0.59 TCGA-PJ-A5Z9-01 4 48037862 48037862 T C NIPAL1 Silent p.N302N 0.43 TCGA-PJ-A5Z9-01 5 131647747 131647747 G T SLC22A4 Intron 0.38 TCGA-PJ-A5Z9-01 5 137717257 137717257 A C KDM3B Missense_Mutation p.D253A 0.33 deleterious(0.02) benign(0.003) TCGA-PJ-A5Z9-01 5 178310106 178310106 C T ZNF354B Missense_Mutation p.T218I 0.39 tolerated(0.26) benign(0.002) TCGA-PJ-A5Z9-01 5 2748624 2748624 C T IRX2 Missense_Mutation p.A400T 0.10 deleterious(0.05) probably_damaging(0.959) TCGA-PJ-A5Z9-01 5 64892965 64892965 C T TRIM23 Missense_Mutation p.V408I 0.05 deleterious(0.05) possibly_damaging(0.766) TCGA-PJ-A5Z9-01 5 79970928 79970928 A T MSH3 Missense_Mutation p.N385I 0.40 deleterious(0.02) benign(0.285) TCGA-PJ-A5Z9-01 6 139262487 139262487 A T REPS1 Missense_Mutation p.L374M 0.19 tolerated(0.05) probably_damaging(0.996) TCGA-PJ-A5Z9-01 6 146207761 146207761 A - SHPRH 3'UTR 0.31 TCGA-PJ-A5Z9-01 6 31962347 31962347 G A C4A Missense_Mutation p.V889M 0.25 deleterious(0) probably_damaging(0.972) TCGA-PJ-A5Z9-01 6 33393615 33393615 G C SYNGAP1 Missense_Mutation p.S77T 0.31 tolerated(0.97) benign(0.001) TCGA-PJ-A5Z9-01 6 90573643 90573643 T C CASP8AP2 RNA 0.07 TCGA-PJ-A5Z9-01 7 102839035 102839049 GCTTTACCTCACTGT - DPY19L2P2 Splice_Site 0.20 TCGA-PJ-A5Z9-01 7 31862809 31862809 C A PDE1C Missense_Mutation p.G547V 0.31 tolerated(0.06) probably_damaging(0.979) TCGA-PJ-A5Z9-01 8 142367789 142367789 A T GPR20 Missense_Mutation p.C79S 0.31 deleterious(0.04) benign(0.262) TCGA-PJ-A5Z9-01 8 24813800 24813800 G A CTD-2168K21.2 5'Flank 0.07 TCGA-PJ-A5Z9-01 8 2824167 2824167 A G CSMD1 Missense_Mutation p.Y3009H 0.42 probably_damaging(0.926) TCGA-PJ-A5Z9-01 8 99039960 99039960 G T MATN2 Missense_Mutation p.R753S 0.39 deleterious(0) probably_damaging(1) TCGA-PJ-A5Z9-01 9 137777085 137777085 G T FCN2 Missense_Mutation p.G101V 0.33 deleterious(0.02) benign(0.384) TCGA-PJ-A5Z9-01 9 20988333 20988333 G A FOCAD Missense_Mutation p.V1637I 0.07 deleterious(0.05) probably_damaging(0.993) TCGA-PJ-A5Z9-01 9 32541932 32541932 C T TOPORS Missense_Mutation p.S864N 0.29 deleterious(0) benign(0.184) TCGA-PJ-A5Z9-01 X 150348665 150348665 G A GPR50 Missense_Mutation p.V204M 0.27 deleterious(0.01) possibly_damaging(0.593) TCGA-PJ-A5Z9-01 X 48053578 48053578 G T SSX5 Missense_Mutation p.N130K 0.03 tolerated(0.17) probably_damaging(0.992) TCGA-PJ-A5Z9-01 X 71802352 71802352 G A PHKA1 Missense_Mutation p.L1132F 0.29 deleterious(0.01) benign(0.089) TCGA-PJ-A5Z9-01 X 91873700 91873700 C T PCDH11X Missense_Mutation p.R1269C 0.03 deleterious_low_confidence(0.01) benign(0.002) TCGA-PJ-A5Z9-01 X 9683003 9683003 C T TBL1X Missense_Mutation p.A556V 0.46 tolerated(0.28) benign(0.067) TCGA-PJ-A8JU-01 10 70645490 70645490 C A STOX1 Silent p.A646A 0.71 TCGA-PJ-A8JU-01 10 75535419 75535419 C A FUT11 Silent p.I485I 0.65 TCGA-PJ-A8JU-01 10 89720837 89720837 A T PTEN Nonsense_Mutation p.K330* 0.69 TCGA-PJ-A8JU-01 11 108562631 108562631 G A DDX10 Missense_Mutation p.R335Q 0.29 deleterious(0) probably_damaging(0.982) TCGA-PJ-A8JU-01 11 46563838 46563838 A G AMBRA1 Missense_Mutation p.F487L 0.37 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-PJ-A8JU-01 11 46569397 46569397 G T AMBRA1 Missense_Mutation p.S55Y 0.33 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-PJ-A8JU-01 11 58170860 58170860 G T OR5B3 Missense_Mutation p.T8K 0.07 tolerated_low_confidence(0.07) benign(0.029) TCGA-PJ-A8JU-01 11 62561809 62561809 G A NXF1 Missense_Mutation p.P561S 0.04 tolerated(0.11) benign(0.271) TCGA-PJ-A8JU-01 11 82877708 82877708 G A PCF11 Missense_Mutation p.S590N 0.29 tolerated(0.91) benign(0.01) TCGA-PJ-A8JU-01 11 85375427 85375427 T C CREBZF Missense_Mutation p.R165G 0.30 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-PJ-A8JU-01 12 57872506 57872506 C G ARHGAP9 Missense_Mutation p.L117F 0.60 deleterious(0.04) benign(0.299) TCGA-PJ-A8JU-01 12 72962372 72962372 T C TRHDE Silent p.T644T 0.52 TCGA-PJ-A8JU-01 14 106926495 106926495 C G IGHV3-43 Missense_Mutation p.G16A 0.23 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-PJ-A8JU-01 14 24976587 24976587 G C CMA1 Missense_Mutation p.L62V 0.24 deleterious(0.02) benign(0.067) TCGA-PJ-A8JU-01 14 24976588 24976588 C A CMA1 Silent p.V61V 0.25 TCGA-PJ-A8JU-01 14 68113700 68113700 T A ARG2 Missense_Mutation p.I227N 0.42 deleterious(0) probably_damaging(1) TCGA-PJ-A8JU-01 15 25207341 25207341 C A SNURF Nonsense_Mutation p.S32* 0.38 TCGA-PJ-A8JU-01 15 41062848 41062848 T C C15orf62 Missense_Mutation p.I52T 0.35 tolerated(0.18) benign(0.021) TCGA-PJ-A8JU-01 15 69349072 69349072 A G NOX5 3'UTR 0.28 TCGA-PJ-A8JU-01 15 69548297 69548297 G A GLCE Missense_Mutation p.G51E 0.31 tolerated_low_confidence(0.5) benign(0.047) TCGA-PJ-A8JU-01 15 75042653 75042653 G A CYP1A2 Missense_Mutation p.V192M 0.45 tolerated(0.07) benign(0.433) TCGA-PJ-A8JU-01 15 75551000 75551000 A - GOLGA6C Frame_Shift_Del p.K21Nfs*9 0.19 TCGA-PJ-A8JU-01 15 75562489 75562489 C T GOLGA6C Silent p.N677N 0.12 TCGA-PJ-A8JU-01 15 96880778 96880778 C A NR2F2 Missense_Mutation p.P391H 0.34 deleterious(0.01) probably_damaging(0.986) TCGA-PJ-A8JU-01 16 12145722 12145722 A G SNX29 Missense_Mutation p.E256G 0.33 deleterious(0) benign(0.219) TCGA-PJ-A8JU-01 16 19868017 19868017 T C IQCK 3'UTR 0.48 TCGA-PJ-A8JU-01 16 2880794 2880794 A T ZG16B Missense_Mutation p.K87I 0.53 tolerated(0.1) possibly_damaging(0.501) TCGA-PJ-A8JU-01 16 30976438 30976439 - C SETD1A Frame_Shift_Ins p.R461Pfs*18 0.17 TCGA-PJ-A8JU-01 16 4862237 4862237 T - GLYR1 Frame_Shift_Del p.R378Gfs*23 0.28 TCGA-PJ-A8JU-01 16 570872 570872 G A RAB11FIP3 3'UTR 0.32 TCGA-PJ-A8JU-01 16 58742096 58742096 G - GOT2 Frame_Shift_Del p.I425Ffs*32 0.35 TCGA-PJ-A8JU-01 16 67038021 67038021 T A CES4A Missense_Mutation p.V325E 0.21 deleterious(0) possibly_damaging(0.641) TCGA-PJ-A8JU-01 16 67232079 67232079 T C E2F4 3'UTR 0.30 TCGA-PJ-A8JU-01 17 10404016 10404016 C G MYH1 Missense_Mutation p.K1264N 0.29 tolerated(0.29) probably_damaging(0.923) TCGA-PJ-A8JU-01 17 18064667 18064667 C T MYO15A Silent p.I3141I 0.27 TCGA-PJ-A8JU-01 17 26944105 26944105 A T KIAA0100 Intron 0.39 TCGA-PJ-A8JU-01 17 3119721 3119721 C T OR1A1 Silent p.D269D 0.34 TCGA-PJ-A8JU-01 17 37903002 37903002 A C GRB7 Splice_Site p.X508_splice 0.34 TCGA-PJ-A8JU-01 17 38955927 38955927 G A KRT28 Silent p.G73G 0.36 TCGA-PJ-A8JU-01 17 45452288 45452311 AAAAACAGGTTTCGTCTACGGAAA - EFCAB13 In_Frame_Del p.K444_K451del 0.23 TCGA-PJ-A8JU-01 17 45735997 45735997 G A KPNB1 Missense_Mutation p.E203K 0.41 deleterious(0) probably_damaging(0.999) TCGA-PJ-A8JU-01 17 46805780 46805780 G A HOXB13 Missense_Mutation p.P59L 0.35 deleterious(0) possibly_damaging(0.463) TCGA-PJ-A8JU-01 17 48072155 48072155 T C DLX3 Missense_Mutation p.N70D 0.36 tolerated(0.19) benign(0.055) TCGA-PJ-A8JU-01 17 57774700 57774700 A G PTRH2 3'UTR 0.42 TCGA-PJ-A8JU-01 17 58262881 58262881 C A USP32 Missense_Mutation p.K1258N 0.35 deleterious(0.03) probably_damaging(0.994) TCGA-PJ-A8JU-01 17 60039087 60039087 G T MED13 Silent p.I1706I 0.25 TCGA-PJ-A8JU-01 17 60743875 60743875 A - MRC2 Frame_Shift_Del p.N252Tfs*23 0.18 TCGA-PJ-A8JU-01 17 61558530 61558530 C G ACE Missense_Mutation p.T309S 0.32 deleterious(0.05) probably_damaging(0.995) TCGA-PJ-A8JU-01 17 74078359 74078359 C T EXOC7 3'Flank 0.31 TCGA-PJ-A8JU-01 17 7482803 7482803 A G CD68 5'UTR 0.25 TCGA-PJ-A8JU-01 17 76355088 76355088 T C SOCS3 Missense_Mutation p.E30G 0.35 deleterious(0.03) benign(0.2) TCGA-PJ-A8JU-01 18 10680336 10680336 T C PIEZO2 Silent p.K2491K 0.41 TCGA-PJ-A8JU-01 18 10680342 10680342 A T PIEZO2 Nonsense_Mutation p.Y2489* 0.44 TCGA-PJ-A8JU-01 19 10418909 10418909 T A ZGLP1 Missense_Mutation p.K150M 0.41 deleterious(0) possibly_damaging(0.503) TCGA-PJ-A8JU-01 19 13010540 13010540 A G GCDH 3'UTR 0.25 TCGA-PJ-A8JU-01 19 18496987 18497004 AACCTGCACAGCCATGCC TTTCCATGCCCGCA GDF15 Missense_Mutation 0.40 TCGA-PJ-A8JU-01 19 19655554 19655554 C T CILP2 Missense_Mutation p.R734C 0.37 deleterious(0.03) possibly_damaging(0.634) TCGA-PJ-A8JU-01 19 47181737 47181737 T G PRKD2 Missense_Mutation p.N752H 0.32 deleterious(0) probably_damaging(0.999) TCGA-PJ-A8JU-01 19 48048594 48048594 G A ZNF541 Nonsense_Mutation p.R398* 0.32 TCGA-PJ-A8JU-01 19 48342911 48342911 C T CRX Missense_Mutation p.A196V 0.44 tolerated(0.06) benign(0.439) TCGA-PJ-A8JU-01 19 51361852 51361853 - TTT KLK3 Splice_Site p.X210_splice 0.25 TCGA-PJ-A8JU-01 19 57133451 57133451 G A ZNF71 Missense_Mutation p.G266R 0.36 deleterious(0.01) probably_damaging(1) TCGA-PJ-A8JU-01 19 58004676 58004676 A G ZNF419 Missense_Mutation p.I252V 0.35 tolerated(0.12) possibly_damaging(0.866) TCGA-PJ-A8JU-01 19 5867537 5867537 C T FUT5 Missense_Mutation p.S67N 0.41 tolerated(0.37) benign(0.022) TCGA-PJ-A8JU-01 19 6466490 6466490 T C CRB3 Missense_Mutation p.I57T 0.19 tolerated(0.25) benign(0.004) TCGA-PJ-A8JU-01 19 9074427 9074427 A - MUC16 Frame_Shift_Del p.V4340Afs*21 0.31 TCGA-PJ-A8JU-01 1 11345827 11345827 T C UBIAD1 Missense_Mutation p.I219T 0.35 deleterious(0) possibly_damaging(0.472) TCGA-PJ-A8JU-01 1 1262323 1262323 A T GLTPD1 Missense_Mutation p.K11N 0.41 deleterious(0.03) possibly_damaging(0.535) TCGA-PJ-A8JU-01 1 144852422 144852422 G - PDE4DIP Frame_Shift_Del p.H2341Tfs*5 0.12 TCGA-PJ-A8JU-01 1 154931749 154931749 G A PYGO2 Missense_Mutation p.P243S 0.25 tolerated(0.47) possibly_damaging(0.857) TCGA-PJ-A8JU-01 1 155948231 155948240 GGACCAGGGA - ARHGEF2 5'UTR 0.21 TCGA-PJ-A8JU-01 1 161018086 161018086 A C ARHGAP30 Missense_Mutation p.C909G 0.32 tolerated_low_confidence(0.07) benign(0.144) TCGA-PJ-A8JU-01 1 216372974 216372974 A G USH2A Missense_Mutation p.L1269P 0.33 benign(0) TCGA-PJ-A8JU-01 1 236979823 236979823 G A MTR Silent p.V248V 0.26 TCGA-PJ-A8JU-01 1 248569912 248569912 G T OR2T1 Missense_Mutation p.G206V 0.04 deleterious(0) probably_damaging(0.987) TCGA-PJ-A8JU-01 1 32151315 32151315 A G COL16A1 Silent p.R647R 0.33 TCGA-PJ-A8JU-01 1 36773209 36773209 G A SH3D21 Splice_Site p.X146_splice 0.28 TCGA-PJ-A8JU-01 1 52830304 52830304 T C CC2D1B Intron 0.24 TCGA-PJ-A8JU-01 1 55472846 55472846 G T BSND Missense_Mutation p.G150V 0.33 tolerated(0.16) possibly_damaging(0.897) TCGA-PJ-A8JU-01 1 61921256 61921256 G A NFIA 3'Flank 0.24 TCGA-PJ-A8JU-01 1 78511673 78511673 G T GIPC2 5'UTR 0.30 TCGA-PJ-A8JU-01 20 306671 306679 ACCCCGAGC - SOX12 In_Frame_Del p.T35_S37del 0.18 TCGA-PJ-A8JU-01 20 44576152 44576152 T C PCIF1 Intron 0.21 TCGA-PJ-A8JU-01 20 47732330 47732330 T C STAU1 Silent p.G569G 0.29 TCGA-PJ-A8JU-01 21 40670471 40670471 A C BRWD1 Missense_Mutation p.L79W 0.28 deleterious(0) probably_damaging(0.993) TCGA-PJ-A8JU-01 22 28193970 28193970 T C MN1 Silent p.P854P 0.42 TCGA-PJ-A8JU-01 22 31583132 31583132 G - RNF185 Frame_Shift_Del p.S21Vfs*133 0.32 TCGA-PJ-A8JU-01 22 39918544 39918544 C A ATF4 Silent p.I331I 0.52 TCGA-PJ-A8JU-01 2 102029382 102029382 A G RFX8 Missense_Mutation p.M238T 0.38 tolerated(0.06) benign(0.009) TCGA-PJ-A8JU-01 2 128409526 128409526 G T GPR17 3'UTR 0.35 TCGA-PJ-A8JU-01 2 153415322 153415322 C A FMNL2 Missense_Mutation p.A143E 0.30 probably_damaging(0.941) TCGA-PJ-A8JU-01 2 177016768 177016783 GGATGAAGAAGGTGCA - HOXD4 Frame_Shift_Del p.W136Sfs*2 0.22 TCGA-PJ-A8JU-01 2 17865003 17865003 A C SMC6 Nonsense_Mutation p.Y902* 0.34 TCGA-PJ-A8JU-01 2 179247342 179247342 T C OSBPL6 Intron 0.30 TCGA-PJ-A8JU-01 2 179421832 179421832 T C TTN Missense_Mutation p.N29350S 0.36 TCGA-PJ-A8JU-01 2 191795233 191795233 T C GLS Missense_Mutation p.M499T 0.35 tolerated(0.11) benign(0.066) TCGA-PJ-A8JU-01 2 220173977 220173977 G A PTPRN Silent p.S26S 0.45 TCGA-PJ-A8JU-01 2 224856616 224856616 A G SERPINE2 Missense_Mutation p.F209L 0.30 deleterious(0) possibly_damaging(0.841) TCGA-PJ-A8JU-01 2 24930361 24930361 T G NCOA1 Silent p.G674G 0.32 TCGA-PJ-A8JU-01 2 27327418 27327418 A G CGREF1 Intron 0.32 TCGA-PJ-A8JU-01 2 61597475 61597475 C G USP34 Missense_Mutation p.C411S 0.03 deleterious(0.05) probably_damaging(0.916) TCGA-PJ-A8JU-01 2 73868395 73868395 T C NAT8 Missense_Mutation p.M121V 0.36 tolerated(0.06) benign(0.01) TCGA-PJ-A8JU-01 2 74129580 74129580 C T ACTG2 Missense_Mutation p.H74Y 0.59 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-PJ-A8JU-01 2 90260146 90260146 G A IGKV1D-8 Silent p.R83R 0.38 TCGA-PJ-A8JU-01 3 121417110 121417110 G C GOLGB1 Missense_Mutation p.L754V 0.26 probably_damaging(0.966) TCGA-PJ-A8JU-01 3 136096520 136096520 A G STAG1 Silent p.N784N 0.42 TCGA-PJ-A8JU-01 3 183560125 183560125 G C PARL Missense_Mutation p.L240V 0.25 deleterious(0) probably_damaging(0.973) TCGA-PJ-A8JU-01 3 42730387 42730387 A G KLHL40 Missense_Mutation p.Y483C 0.19 deleterious(0) probably_damaging(0.993) TCGA-PJ-A8JU-01 3 45266853 45266853 T G TMEM158 Missense_Mutation p.T223P 0.16 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-PJ-A8JU-01 3 49841865 49841865 C T FAM212A Silent p.G103G 0.21 TCGA-PJ-A8JU-01 3 53264594 53264594 C T TKT Missense_Mutation p.G337D 0.56 deleterious(0) probably_damaging(1) TCGA-PJ-A8JU-01 4 114278777 114278777 T A ANK2 Missense_Mutation p.S3001R 0.28 benign(0.361) TCGA-PJ-A8JU-01 4 122301938 122301938 G A QRFPR 5'UTR 0.25 TCGA-PJ-A8JU-01 4 125590179 125590187 TCAGAACCT - ANKRD50 In_Frame_Del p.E1415_S1417del 0.26 TCGA-PJ-A8JU-01 4 174298661 174298661 T G SAP30 3'UTR 0.32 TCGA-PJ-A8JU-01 4 1809145 1809145 T C FGFR3 3'UTR 0.26 TCGA-PJ-A8JU-01 4 94750807 94750807 T C ATOH1 Missense_Mutation p.Y244H 0.41 tolerated(0.28) benign(0.009) TCGA-PJ-A8JU-01 5 132534854 132534854 T A FSTL4 Missense_Mutation p.N821I 0.36 deleterious(0) possibly_damaging(0.643) TCGA-PJ-A8JU-01 5 134367076 134367076 T C PITX1 Missense_Mutation p.S98G 0.27 deleterious(0) probably_damaging(0.986) TCGA-PJ-A8JU-01 5 146833138 146833138 C A DPYSL3 Intron 0.09 TCGA-PJ-A8JU-01 5 157214655 157214655 T C CLINT1 Silent p.%3D 0.10 TCGA-PJ-A8JU-01 5 90446037 90446037 A T GPR98 Missense_Mutation p.E6208V 0.30 possibly_damaging(0.788) TCGA-PJ-A8JU-01 6 24650982 24650982 A T TDP2 3'UTR 0.28 TCGA-PJ-A8JU-01 6 78172132 78172132 A - HTR1B Frame_Shift_Del p.F330Sfs*6 0.26 TCGA-PJ-A8JU-01 6 79655791 79655791 C T PHIP Silent p.E1519E 0.36 TCGA-PJ-A8JU-01 7 100679990 100679990 G A MUC17 Missense_Mutation p.E1765K 0.33 possibly_damaging(0.824) TCGA-PJ-A8JU-01 7 101891788 101891788 G A CUX1 Silent p.R1339R 0.52 TCGA-PJ-A8JU-01 8 101117804 101117804 G C RGS22 Intron 0.22 TCGA-PJ-A8JU-01 8 101717893 101717893 A G PABPC1 Silent p.V537V 0.34 TCGA-PJ-A8JU-01 8 20069635 20069635 T A ATP6V1B2 Missense_Mutation p.F243Y 0.39 tolerated(0.1) benign(0.309) TCGA-PJ-A8JU-01 8 67514696 67514696 C T MYBL1 Missense_Mutation p.G28E 0.34 tolerated(0.08) benign(0.19) TCGA-PJ-A8JU-01 8 71056986 71056986 A G NCOA2 Silent p.P901P 0.28 TCGA-PJ-A8JU-01 8 95952262 95952262 G T TP53INP1 Missense_Mutation p.P100Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-PJ-A8JU-01 9 107367111 107367111 C A OR13C2 Missense_Mutation p.E266D 0.41 tolerated(1) benign(0.004) TCGA-PJ-A8JU-01 9 123287316 123287316 G A CDK5RAP2 Missense_Mutation p.A347V 0.36 deleterious(0.01) benign(0.004) TCGA-PJ-A8JU-01 X 100668564 100668564 T C HNRNPH2 3'UTR 0.53 TCGA-PJ-A8JU-01 X 109694814 109694814 G A RGAG1 Silent p.P323P 0.07 TCGA-Q2-A5QZ-01 10 102783355 102783355 A G PDZD7 Missense_Mutation p.L127P 0.41 deleterious(0) probably_damaging(0.994) TCGA-Q2-A5QZ-01 10 35360197 35360197 G C CUL2 Missense_Mutation p.L36V 0.25 deleterious(0.01) probably_damaging(0.969) TCGA-Q2-A5QZ-01 10 70404893 70404893 G T TET1 Missense_Mutation p.A803S 0.12 deleterious(0.03) possibly_damaging(0.863) TCGA-Q2-A5QZ-01 10 96967018 96967018 C A C10orf129 Missense_Mutation p.Q153K 0.22 deleterious(0) benign(0.051) TCGA-Q2-A5QZ-01 11 1078339 1078339 C T MUC2 Missense_Mutation p.P209L 0.28 probably_damaging(1) TCGA-Q2-A5QZ-01 11 118373932 118373932 A C KMT2A Missense_Mutation p.E2442A 0.38 probably_damaging(0.991) TCGA-Q2-A5QZ-01 11 119001447 119001447 C G HINFP Missense_Mutation p.S65C 0.39 tolerated(0.06) benign(0.005) TCGA-Q2-A5QZ-01 11 48285602 48285602 T G OR4X1 Missense_Mutation p.L64V 0.11 deleterious(0.01) benign(0.102) TCGA-Q2-A5QZ-01 11 57182149 57182149 G A SLC43A3 Silent p.P333P 0.34 TCGA-Q2-A5QZ-01 12 10539523 10539523 T C KLRK1 Missense_Mutation p.K43E 0.38 tolerated(0.22) benign(0.089) TCGA-Q2-A5QZ-01 12 106729801 106729811 ATATGTTAGAC - TCP11L2 Splice_Site p.X321_splice 0.21 TCGA-Q2-A5QZ-01 12 111785758 111785759 - A CUX2 Frame_Shift_Ins p.Q1365Tfs*4 0.28 TCGA-Q2-A5QZ-01 12 114385205 114385205 G A RBM19 Silent p.F447F 0.23 TCGA-Q2-A5QZ-01 12 125509640 125509640 C A BRI3BP Silent p.S140S 0.37 TCGA-Q2-A5QZ-01 12 15673198 15673198 G A PTPRO Missense_Mutation p.D615N 0.30 deleterious(0) benign(0.185) TCGA-Q2-A5QZ-01 12 49391677 49391677 C T DDN Missense_Mutation p.G328S 0.21 tolerated_low_confidence(0.06) possibly_damaging(0.83) TCGA-Q2-A5QZ-01 12 6457064 6457064 G A SCNN1A Missense_Mutation p.S721F 0.32 tolerated_low_confidence(0.07) possibly_damaging(0.683) TCGA-Q2-A5QZ-01 12 8800577 8800577 G C MFAP5 3'UTR 0.50 TCGA-Q2-A5QZ-01 13 113979922 113979922 C G GRTP1 Intron 0.42 TCGA-Q2-A5QZ-01 13 21306119 21306119 T C N6AMT2 Silent p.P123P 0.45 TCGA-Q2-A5QZ-01 13 99092299 99092299 T A FARP1 Splice_Site p.X839_splice 0.17 TCGA-Q2-A5QZ-01 14 21543565 21543565 G C ARHGEF40 Missense_Mutation p.D509H 0.27 deleterious(0.04) benign(0.006) TCGA-Q2-A5QZ-01 14 77580238 77580238 C T CIPC Silent p.F259F 0.47 TCGA-Q2-A5QZ-01 14 78183998 78183998 T A SNW1 3'UTR 0.62 TCGA-Q2-A5QZ-01 15 40915310 40915310 G T CASC5 Missense_Mutation p.V976F 0.24 deleterious(0.01) benign(0.231) TCGA-Q2-A5QZ-01 15 43585144 43585144 G T TGM7 Missense_Mutation p.P68T 0.25 deleterious(0) probably_damaging(0.914) TCGA-Q2-A5QZ-01 15 43585145 43585145 C T TGM7 Silent p.K67K 0.25 TCGA-Q2-A5QZ-01 15 50535435 50535435 C T HDC Missense_Mutation p.E383K 0.40 tolerated(0.35) benign(0.126) TCGA-Q2-A5QZ-01 15 75982866 75982866 G C CSPG4 Silent p.L180L 0.31 TCGA-Q2-A5QZ-01 16 28996234 28996234 G A LAT Missense_Mutation p.A18T 0.30 benign(0.011) TCGA-Q2-A5QZ-01 16 29825753 29825753 A C PRRT2 Missense_Mutation p.I327L 0.30 deleterious(0) probably_damaging(0.997) TCGA-Q2-A5QZ-01 16 4557977 4557977 C T HMOX2 Silent p.R156R 0.41 TCGA-Q2-A5QZ-01 16 68267896 68267896 C G ESRP2 Splice_Site p.X147_splice 0.29 TCGA-Q2-A5QZ-01 16 72923790 72923790 G - ZFHX3 Frame_Shift_Del p.T1097Pfs*14 0.32 TCGA-Q2-A5QZ-01 17 34263772 34263772 C G LYZL6 Missense_Mutation p.G122R 0.53 deleterious(0.02) probably_damaging(1) TCGA-Q2-A5QZ-01 17 40113444 40113444 A T TTC25 RNA 0.41 TCGA-Q2-A5QZ-01 17 40765685 40765685 C T TUBG1 Silent p.A209A 0.04 TCGA-Q2-A5QZ-01 17 41835944 41835944 T C SOST Missense_Mutation p.M56V 0.28 tolerated(0.18) possibly_damaging(0.868) TCGA-Q2-A5QZ-01 17 42171119 42171119 G A HDAC5 Missense_Mutation p.R61W 0.47 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-Q2-A5QZ-01 17 72589598 72589598 G A C17orf77 3'UTR 0.36 TCGA-Q2-A5QZ-01 19 12760979 12760979 G A MAN2B1 Missense_Mutation p.R702C 0.05 deleterious(0) probably_damaging(1) TCGA-Q2-A5QZ-01 19 18254627 18254627 C T MAST3 Silent p.P769P 0.07 TCGA-Q2-A5QZ-01 19 38056037 38056037 G A ZNF571 Silent p.G431G 0.63 TCGA-Q2-A5QZ-01 19 48260326 48260326 C T GLTSCR2 3'Flank 0.48 TCGA-Q2-A5QZ-01 19 9362181 9362181 G C OR7E24 Missense_Mutation p.M154I 0.30 deleterious(0.03) benign(0.178) TCGA-Q2-A5QZ-01 1 154456555 154456555 T G SHE 3'UTR 0.36 TCGA-Q2-A5QZ-01 1 177242681 177242690 GTCAGTTCTG - BRINP2 Frame_Shift_Del p.V243Sfs*28 0.12 TCGA-Q2-A5QZ-01 1 204985554 204985554 G T NFASC Nonsense_Mutation p.E1204* 0.10 TCGA-Q2-A5QZ-01 1 86934706 86934706 G A CLCA1 Missense_Mutation p.G18R 0.46 tolerated(0.16) probably_damaging(0.99) TCGA-Q2-A5QZ-01 20 56813334 56813337 AAAG - PPP4R1L 3'UTR 0.48 TCGA-Q2-A5QZ-01 20 61918934 61918934 T G ARFGAP1 Missense_Mutation p.S318R 0.34 deleterious(0.03) possibly_damaging(0.857) TCGA-Q2-A5QZ-01 2 139322375 139322375 A G SPOPL Missense_Mutation p.H312R 0.15 deleterious(0) probably_damaging(0.969) TCGA-Q2-A5QZ-01 2 167055820 167055820 C T SCN9A Missense_Mutation p.D1766N 0.05 deleterious(0) probably_damaging(1) TCGA-Q2-A5QZ-01 2 233671361 233671361 T A GIGYF2 Silent p.P621P 0.65 TCGA-Q2-A5QZ-01 2 237272540 237272540 C T IQCA1 Silent p.L584L 0.52 TCGA-Q2-A5QZ-01 2 50850682 50850682 G T NRXN1 Missense_Mutation p.Q335K 0.43 tolerated(0.06) probably_damaging(0.915) TCGA-Q2-A5QZ-01 2 89161544 89161544 G C IGKC 5'Flank 0.48 TCGA-Q2-A5QZ-01 3 125690910 125690910 G T ROPN1B Missense_Mutation p.D5Y 0.29 deleterious(0.01) benign(0.028) TCGA-Q2-A5QZ-01 3 128182114 128182114 G T DNAJB8 5'UTR 0.33 TCGA-Q2-A5QZ-01 3 135825108 135825108 T C PPP2R3A Silent p.A1091A 0.30 TCGA-Q2-A5QZ-01 3 183525842 183525842 G T YEATS2 Missense_Mutation p.A1346S 0.04 deleterious(0.03) benign(0.034) TCGA-Q2-A5QZ-01 3 185960324 185960324 T A DGKG Nonsense_Mutation p.R599* 0.28 TCGA-Q2-A5QZ-01 3 195447900 195447900 G A MUC20 Missense_Mutation p.A8T 0.06 deleterious_low_confidence(0.04) probably_damaging(0.957) TCGA-Q2-A5QZ-01 3 62189090 62189090 G C PTPRG Missense_Mutation p.A541P 0.65 tolerated(0.2) possibly_damaging(0.649) TCGA-Q2-A5QZ-01 4 6335365 6335365 T C PPP2R2C Missense_Mutation p.Y295C 0.61 deleterious(0) benign(0.149) TCGA-Q2-A5QZ-01 5 14601482 14601482 G A FAM105A Silent p.E93E 0.23 TCGA-Q2-A5QZ-01 5 169688 169688 G T PLEKHG4B Missense_Mutation p.G881V 0.07 deleterious(0.05) probably_damaging(0.988) TCGA-Q2-A5QZ-01 6 167709627 167709627 C T UNC93A Missense_Mutation p.A126V 0.40 tolerated(0.3) benign(0.009) TCGA-Q2-A5QZ-01 6 29408232 29408232 C T OR10C1 Missense_Mutation p.A147V 0.06 deleterious(0.04) possibly_damaging(0.669) TCGA-Q2-A5QZ-01 6 43412898 43412898 A G ABCC10 Missense_Mutation p.N959S 0.38 tolerated(0.13) benign(0.099) TCGA-Q2-A5QZ-01 6 47471115 47471115 A T CD2AP Missense_Mutation p.E35V 0.07 deleterious(0.04) probably_damaging(0.979) TCGA-Q2-A5QZ-01 6 48036108 48036108 T C PTCHD4 Missense_Mutation p.D95G 0.06 deleterious(0.01) benign(0.112) TCGA-Q2-A5QZ-01 6 51890186 51890186 C - PKHD1 Frame_Shift_Del p.N1475Ifs*6 0.20 TCGA-Q2-A5QZ-01 6 56989656 56989656 G A ZNF451 Missense_Mutation p.R104K 0.06 tolerated(1) probably_damaging(0.986) TCGA-Q2-A5QZ-01 6 57049006 57049006 A G BAG2 3'UTR 0.16 TCGA-Q2-A5QZ-01 6 64394128 64394128 G A PHF3 Missense_Mutation p.A169T 0.39 tolerated(0.16) benign(0.003) TCGA-Q2-A5QZ-01 6 82883139 82883139 T C IBTK Missense_Mutation p.T1248A 0.09 tolerated(0.37) benign(0.001) TCGA-Q2-A5QZ-01 6 88385215 88385215 A T AKIRIN2 3'UTR 0.06 TCGA-Q2-A5QZ-01 7 128415147 128415147 C T OPN1SW Silent p.K138K 0.27 TCGA-Q2-A5QZ-01 7 150839014 150839014 G A AGAP3 Missense_Mutation p.V612M 0.38 deleterious(0) probably_damaging(0.991) TCGA-Q2-A5QZ-01 7 151188050 151188050 A T RHEB Missense_Mutation p.Y35N 0.05 deleterious(0) probably_damaging(0.993) TCGA-Q2-A5QZ-01 7 152012386 152012386 T - KMT2C Frame_Shift_Del p.S143Vfs*3 0.28 TCGA-Q2-A5QZ-01 7 23547073 23547073 G A TRA2A Missense_Mutation p.P203S 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-Q2-A5QZ-01 7 86577110 86577110 A - KIAA1324L Frame_Shift_Del p.S147Lfs*33 0.25 TCGA-Q2-A5QZ-01 8 39550201 39550201 T A ADAM18 Splice_Site p.X634_splice 0.33 TCGA-Q2-A5QZ-01 9 113233740 113233740 C A SVEP1 Missense_Mutation p.A968S 0.10 benign(0.011) TCGA-Q2-A5QZ-01 9 130947865 130947865 T - CIZ1 Frame_Shift_Del p.K183Nfs*80 0.20 TCGA-Q2-A5QZ-01 9 139302279 139302279 T G SDCCAG3 Missense_Mutation p.K134T 0.25 tolerated(0.07) probably_damaging(0.927) TCGA-Q2-A5QZ-01 9 35563874 35563874 C T FAM166B 5'UTR 0.29 TCGA-Q2-A5QZ-01 9 37745145 37745145 G A FRMPD1 Missense_Mutation p.G1039E 0.38 tolerated_low_confidence(0.12) benign(0.059) TCGA-Q2-A5QZ-01 9 71628295 71628295 G A PRKACG Silent p.P238P 0.35 TCGA-Q2-A5QZ-01 9 8504321 8504321 G A PTPRD Missense_Mutation p.R588C 0.06 tolerated(0.13) probably_damaging(0.999) TCGA-Q2-A5QZ-01 X 12840843 12840843 C G PRPS2 Missense_Mutation p.I298M 0.30 tolerated(0.26) benign(0.319) TCGA-Q2-A5QZ-01 X 135475736 135475737 - AAAAT GPR112 Frame_Shift_Ins p.N2693Kfs*16 0.24 TCGA-Q2-A5QZ-01 X 151808889 151808890 TG - GABRQ Frame_Shift_Del p.S68Kfs*27 0.28 TCGA-Q2-A5QZ-01 X 18919658 18919658 C A PHKA2 Missense_Mutation p.G991V 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-Q2-A5QZ-01 X 80001213 80001213 G A BRWD3 Missense_Mutation p.A149V 0.32 deleterious(0) benign(0.434) TCGA-Q2-A5QZ-01 X 80532507 80532507 C A SH3BGRL Missense_Mutation p.L24I 0.32 deleterious(0.02) possibly_damaging(0.809) TCGA-SX-A71R-01 11 117097999 117097999 C T PCSK7 Missense_Mutation p.D215N 0.46 deleterious(0.03) probably_damaging(0.913) TCGA-SX-A71R-01 11 73021391 73021391 G A ARHGEF17 Missense_Mutation p.E570K 0.46 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-SX-A71R-01 11 74563097 74563097 C T XRRA1 Missense_Mutation p.A393T 0.35 deleterious(0) probably_damaging(0.999) TCGA-SX-A71R-01 11 95826617 95826617 T - MAML2 Frame_Shift_Del p.N193Mfs*29 0.31 TCGA-SX-A71R-01 11 9746244 9746244 G A SWAP70 Missense_Mutation p.G152R 0.50 tolerated(0.69) benign(0.265) TCGA-SX-A71R-01 12 120572148 120572148 C T GCN1L1 Missense_Mutation p.V2422I 0.05 benign(0.002) TCGA-SX-A71R-01 12 131360202 131360202 T G RAN Missense_Mutation p.F161V 0.48 deleterious(0.01) probably_damaging(0.975) TCGA-SX-A71R-01 12 50232321 50232321 A G BCDIN3D Silent p.L238L 0.53 TCGA-SX-A71R-01 12 82752072 82752072 C T CCDC59 Silent p.R28R 0.38 TCGA-SX-A71R-01 13 25486722 25486722 G A CENPJ Nonsense_Mutation p.Q148* 0.48 TCGA-SX-A71R-01 13 25486739 25486739 A C CENPJ Missense_Mutation p.L142R 0.46 deleterious(0) probably_damaging(0.999) TCGA-SX-A71R-01 14 21862288 21862288 C T CHD8 Missense_Mutation p.R1889H 0.42 deleterious(0) probably_damaging(0.991) TCGA-SX-A71R-01 14 31382758 31382758 A T STRN3 Missense_Mutation p.V449E 0.49 deleterious(0) probably_damaging(0.994) TCGA-SX-A71R-01 15 31327765 31327765 A T TRPM1 Nonsense_Mutation p.L912* 0.55 TCGA-SX-A71R-01 15 93162664 93162664 C A FAM174B 3'UTR 0.49 TCGA-SX-A71R-01 16 20807932 20807932 G T ERI2 3'UTR 0.41 TCGA-SX-A71R-01 16 71683236 71683236 T C PHLPP2 Missense_Mutation p.R1177G 0.06 tolerated(0.1) benign(0) TCGA-SX-A71R-01 16 87902587 87902587 C A SLC7A5 Missense_Mutation p.V148L 0.34 deleterious(0.01) probably_damaging(0.939) TCGA-SX-A71R-01 17 18088007 18088007 C T ALKBH5 Silent p.P150P 0.30 TCGA-SX-A71R-01 17 18284974 18284974 C G EVPLL Nonsense_Mutation p.Y92* 0.30 TCGA-SX-A71R-01 17 29632360 29632360 C G EVI2B Missense_Mutation p.E90Q 0.35 tolerated(0.25) benign(0.068) TCGA-SX-A71R-01 17 39911946 39911946 A T JUP 3'UTR 0.68 TCGA-SX-A71R-01 17 72768111 72768111 A G NAT9 Silent p.L159L 0.60 TCGA-SX-A71R-01 17 76989751 76989751 A C CANT1 Missense_Mutation p.S363A 0.54 deleterious(0) probably_damaging(0.97) TCGA-SX-A71R-01 18 14184256 14184256 T A ANKRD20A5P Intron 0.38 TCGA-SX-A71R-01 19 11144020 11144020 G C SMARCA4 Missense_Mutation p.V1201L 0.51 benign(0.129) TCGA-SX-A71R-01 19 15752326 15752326 T G CYP4F3 Missense_Mutation p.I34S 0.38 deleterious(0.02) benign(0.013) TCGA-SX-A71R-01 19 50969561 50969561 A T MYBPC2 3'UTR 0.42 TCGA-SX-A71R-01 1 11090277 11090277 C G MASP2 Missense_Mutation p.W418S 0.39 deleterious(0) probably_damaging(1) TCGA-SX-A71R-01 1 181695257 181695258 - GAGGTCA CACNA1E Frame_Shift_Ins p.S736Rfs*101 0.31 TCGA-SX-A71R-01 1 196288615 196288615 T G KCNT2 Missense_Mutation p.N783H 0.42 deleterious(0.03) benign(0.347) TCGA-SX-A71R-01 20 35731101 35731101 A G MROH8 Missense_Mutation p.S1067P 0.60 deleterious_low_confidence(0) benign(0.127) TCGA-SX-A71R-01 21 34926889 34926889 A G SON Silent p.S1784S 0.52 TCGA-SX-A71R-01 21 37710172 37710172 T C MORC3 Silent p.L130L 0.43 TCGA-SX-A71R-01 21 38494269 38494269 A T TTC3 Missense_Mutation p.E351D 0.45 tolerated(0.13) benign(0.325) TCGA-SX-A71R-01 2 20403922 20403922 C T SDC1 Silent p.L93L 0.47 TCGA-SX-A71R-01 2 50280612 50280612 T G NRXN1 Missense_Mutation p.N1349H 0.45 deleterious(0.05) benign(0.018) TCGA-SX-A71R-01 2 54884994 54884994 G - SPTBN1 Frame_Shift_Del p.V2019Sfs*27 0.34 TCGA-SX-A71R-01 3 157081265 157081265 T C VEPH1 Missense_Mutation p.I541M 0.39 tolerated(0.07) benign(0.015) TCGA-SX-A71R-01 3 19479828 19479828 C T KCNH8 Silent p.F450F 0.46 TCGA-SX-A71R-01 3 27477880 27477880 T C SLC4A7 Silent p.A187A 0.49 TCGA-SX-A71R-01 3 50312775 50312775 G A LSMEM2 5'Flank 0.62 TCGA-SX-A71R-01 4 183714050 183714050 G A TENM3 Missense_Mutation p.M2075I 0.43 deleterious(0) benign(0.107) TCGA-SX-A71R-01 4 83279841 83279841 T C HNRNPD Missense_Mutation p.I198V 0.48 tolerated(0.12) benign(0.173) TCGA-SX-A71R-01 4 84502974 84502974 A G AGPAT9 Silent p.L156L 0.43 TCGA-SX-A71R-01 4 89361148 89361148 C A HERC6 Missense_Mutation p.P893H 0.44 deleterious(0) probably_damaging(1) TCGA-SX-A71R-01 5 132086844 132086844 T A SEPT8 3'UTR 0.50 TCGA-SX-A71R-01 5 138758461 138758461 C A DNAJC18 Missense_Mutation p.V239L 0.38 tolerated(0.06) benign(0.098) TCGA-SX-A71R-01 5 140736033 140736033 A T PCDHGA4 Silent p.V422V 0.45 TCGA-SX-A71R-01 5 141036204 141036204 C A ARAP3 Missense_Mutation p.G1219V 0.43 deleterious(0) probably_damaging(0.98) TCGA-SX-A71R-01 5 154199808 154199808 G A FAXDC2 3'UTR 0.44 TCGA-SX-A71R-01 6 135358073 135358073 C T HBS1L Intron 0.44 TCGA-SX-A71R-01 6 30610949 30610949 G T ATAT1 Intron 0.09 TCGA-SX-A71R-01 6 31827869 31827869 A G NEU1 Missense_Mutation p.V324A 0.54 tolerated(0.64) benign(0.001) TCGA-SX-A71R-01 6 31932058 31932058 G A SKIV2L Missense_Mutation p.S637N 0.41 deleterious(0.02) probably_damaging(0.993) TCGA-SX-A71R-01 6 52656735 52656735 A C GSTA1 Missense_Mutation p.F197C 0.58 deleterious(0) probably_damaging(1) TCGA-SX-A71R-01 7 128034519 128034524 GACAGG - IMPDH1 In_Frame_Del p.L561_S562del 0.14 TCGA-SX-A71R-01 7 142562102 142562102 G A EPHB6 Missense_Mutation p.G182R 0.71 deleterious(0.02) possibly_damaging(0.636) TCGA-SX-A71R-01 7 20687100 20687100 C T ABCB5 Intron 0.76 TCGA-SX-A71R-01 7 42974719 42974719 A G MRPL32 Missense_Mutation p.K99R 0.27 tolerated(0.05) possibly_damaging(0.812) TCGA-SX-A71R-01 8 110592372 110592372 G C SYBU Intron 0.40 TCGA-SX-A71R-01 9 19050301 19050301 C T RRAGA Missense_Mutation p.S215F 0.42 deleterious(0) probably_damaging(0.951) TCGA-SX-A71R-01 9 97329630 97329630 A T FBP2 Silent p.I209I 0.38 TCGA-SX-A71R-01 X 149767104 149767104 G T MTM1 Missense_Mutation p.R62I 0.92 tolerated(0.23) probably_damaging(0.912) TCGA-SX-A71S-01 10 102894047 102894047 G A TLX1 Silent p.S228S 0.41 TCGA-SX-A71S-01 10 103348077 103348077 T C DPCD 5'UTR 0.41 TCGA-SX-A71S-01 10 103577714 103577714 G A MGEA5 Silent p.A22A 0.38 TCGA-SX-A71S-01 10 112327491 112327491 G A SMC3 5'UTR 0.45 TCGA-SX-A71S-01 10 114168188 114168188 C T ACSL5 Silent p.I203I 0.51 TCGA-SX-A71S-01 10 13658405 13658405 A G RP11-295P9.3 Missense_Mutation p.D144G 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-SX-A71S-01 10 29769500 29769500 A G SVIL Silent p.Y1781Y 0.46 TCGA-SX-A71S-01 10 37508624 37508625 - A ANKRD30A Frame_Shift_Ins p.N1274Kfs*13 0.31 TCGA-SX-A71S-01 10 38345574 38345574 T A ZNF33A 3'UTR 0.54 TCGA-SX-A71S-01 10 70231702 70231702 A G DNA2 Missense_Mutation p.F60L 0.44 tolerated_low_confidence(0.73) benign(0) TCGA-SX-A71S-01 10 91203518 91203518 A G SLC16A12 Missense_Mutation p.L100P 0.38 deleterious(0) probably_damaging(0.996) TCGA-SX-A71S-01 11 102661006 102661006 A T MMP1 3'UTR 0.56 TCGA-SX-A71S-01 11 11374645 11374645 T C CSNK2A3 Missense_Mutation p.R8G 0.43 tolerated(0.28) benign(0.342) TCGA-SX-A71S-01 11 118047197 118047198 - G SCN2B 5'UTR 0.24 TCGA-SX-A71S-01 11 118366483 118366483 G A KMT2A Missense_Mutation p.R1811Q 0.43 probably_damaging(0.99) TCGA-SX-A71S-01 11 34916562 34916562 C A APIP Missense_Mutation p.K51N 0.44 deleterious(0) possibly_damaging(0.831) TCGA-SX-A71S-01 11 4566635 4566636 - C OR52M1 Frame_Shift_Ins p.L73Pfs*21 0.29 TCGA-SX-A71S-01 11 4661416 4661416 T C OR51D1 Silent p.A132A 0.33 TCGA-SX-A71S-01 11 47355530 47355530 C T MYBPC3 Silent p.L979L 0.38 TCGA-SX-A71S-01 11 598434 598434 G A PHRF1 Missense_Mutation p.G319D 0.32 deleterious(0) probably_damaging(1) TCGA-SX-A71S-01 11 63978141 63978141 G A FERMT3 Silent p.L73L 0.40 TCGA-SX-A71S-01 11 66610424 66610425 - C C11orf80 Frame_Shift_Ins p.R620Afs*13 0.35 TCGA-SX-A71S-01 11 67057877 67057877 G A ANKRD13D Missense_Mutation p.R104K 0.26 tolerated(0.05) probably_damaging(0.978) TCGA-SX-A71S-01 11 721127 721127 C A EPS8L2 Silent p.P207P 0.42 TCGA-SX-A71S-01 11 77103498 77103498 A G PAK1 Missense_Mutation p.M23T 0.47 tolerated_low_confidence(0.31) benign(0.107) TCGA-SX-A71S-01 11 8122479 8122479 T C TUB Missense_Mutation p.L496P 0.56 deleterious(0) probably_damaging(1) TCGA-SX-A71S-01 12 10762497 10762497 A C MAGOHB Missense_Mutation p.I66S 0.52 deleterious(0) probably_damaging(0.958) TCGA-SX-A71S-01 12 112223071 112223071 G A ALDH2 Missense_Mutation p.A121T 0.49 tolerated(0.78) benign(0.012) TCGA-SX-A71S-01 12 113531444 113531444 G T DTX1 Silent p.V368V 0.46 TCGA-SX-A71S-01 12 50571335 50571336 - A LIMA1 Frame_Shift_Ins p.Q599Sfs*26 0.31 TCGA-SX-A71S-01 12 6120943 6120943 G C VWF Silent p.T1894T 0.51 TCGA-SX-A71S-01 12 68055782 68055782 A T DYRK2 3'UTR 0.56 TCGA-SX-A71S-01 12 6979641 6979641 G T TPI1 3'UTR 0.62 TCGA-SX-A71S-01 12 6979646 6979646 A T TPI1 3'UTR 0.68 TCGA-SX-A71S-01 12 71155251 71155251 C A PTPRR Missense_Mutation p.E209D 0.44 deleterious(0.04) possibly_damaging(0.849) TCGA-SX-A71S-01 12 8672900 8672900 C T CLEC4D Missense_Mutation p.R155C 0.05 deleterious(0.01) benign(0.007) TCGA-SX-A71S-01 12 99109218 99109218 T - APAF1 Frame_Shift_Del p.V991Efs*57 0.27 TCGA-SX-A71S-01 13 77459491 77459491 G C KCTD12 Missense_Mutation p.R265G 0.30 deleterious(0) probably_damaging(0.978) TCGA-SX-A71S-01 14 102514292 102514292 C G DYNC1H1 Missense_Mutation p.T4382S 0.48 benign(0.002) TCGA-SX-A71S-01 14 24546923 24546923 C A CPNE6 Missense_Mutation p.P553H 0.39 tolerated(0.09) benign(0.012) TCGA-SX-A71S-01 14 52899033 52899033 T A TXNDC16 Nonsense_Mutation p.K823* 0.47 TCGA-SX-A71S-01 14 75265567 75265567 T C YLPM1 Silent p.P1189P 0.51 TCGA-SX-A71S-01 14 75476074 75476074 T C EIF2B2 3'UTR 0.75 TCGA-SX-A71S-01 14 88478356 88478356 G T GPR65 3'UTR 0.51 TCGA-SX-A71S-01 14 88478357 88478357 C G GPR65 3'UTR 0.51 TCGA-SX-A71S-01 14 88904446 88904446 C A SPATA7 Missense_Mutation p.P494T 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-SX-A71S-01 14 91642285 91642285 G A C14orf159 Silent p.L205L 0.42 TCGA-SX-A71S-01 15 100882071 100882071 G - ADAMTS17 Frame_Shift_Del p.L12Cfs*151 0.25 TCGA-SX-A71S-01 15 101120996 101120997 - A LINS Frame_Shift_Ins p.G18Wfs*5 0.32 TCGA-SX-A71S-01 15 28457714 28457714 A G HERC2 Missense_Mutation p.F2268L 0.42 benign(0.081) TCGA-SX-A71S-01 15 49097786 49097786 C T CEP152 Missense_Mutation p.E21K 0.32 tolerated(1) benign(0) TCGA-SX-A71S-01 15 68489951 68489951 A C CALML4 Missense_Mutation p.L107R 0.29 deleterious(0) probably_damaging(0.997) TCGA-SX-A71S-01 15 71839638 71839638 G A THSD4 Intron 0.36 TCGA-SX-A71S-01 15 79587013 79587013 C T ANKRD34C Silent p.L463L 0.45 TCGA-SX-A71S-01 16 1821549 1821549 G T NME3 5'UTR 0.25 TCGA-SX-A71S-01 16 19871663 19871663 G T GPRC5B 3'UTR 0.53 TCGA-SX-A71S-01 16 21469942 21469942 C G snoU13 5'Flank 0.14 TCGA-SX-A71S-01 16 31391906 31391908 CTC - ITGAX In_Frame_Del p.S1080del 0.37 TCGA-SX-A71S-01 16 4504895 4504895 A T DNAJA3 Nonsense_Mutation p.K475* 0.46 TCGA-SX-A71S-01 16 47581341 47581341 T A PHKB Intron 0.44 TCGA-SX-A71S-01 16 67007028 67007028 T C CES3 3'UTR 0.53 TCGA-SX-A71S-01 17 17248204 17248204 G A NT5M Missense_Mutation p.D176N 0.58 deleterious(0.02) probably_damaging(0.971) TCGA-SX-A71S-01 17 18160230 18160230 T C FLII Missense_Mutation p.Q56R 0.29 tolerated(0.44) benign(0.028) TCGA-SX-A71S-01 17 19554946 19554946 T C ALDH3A2 Silent p.T80T 0.41 TCGA-SX-A71S-01 17 26861931 26861932 CC - FOXN1 Frame_Shift_Del p.P448Lfs*32 0.19 TCGA-SX-A71S-01 17 33588032 33588032 C A SLFN5 Nonsense_Mutation p.S352* 0.63 TCGA-SX-A71S-01 17 37829901 37829901 G T PGAP3 Missense_Mutation p.T187N 0.60 deleterious(0.05) benign(0.314) TCGA-SX-A71S-01 17 38122087 38122087 G T GSDMA Missense_Mutation p.W49C 0.66 deleterious(0) probably_damaging(1) TCGA-SX-A71S-01 17 41243848 41243848 C - BRCA1 Frame_Shift_Del p.V1234* 0.32 TCGA-SX-A71S-01 17 48745210 48745210 T A ABCC3 Intron 0.39 TCGA-SX-A71S-01 17 5238511 5238511 C T RABEP1 Missense_Mutation p.L134F 0.56 tolerated(0.72) benign(0.255) TCGA-SX-A71S-01 17 56084648 56084648 A G SRSF1 5'UTR 0.62 TCGA-SX-A71S-01 17 57058543 57058543 A T PPM1E 3'UTR 0.70 TCGA-SX-A71S-01 17 59952339 59952339 C T INTS2 Silent p.K847K 0.30 TCGA-SX-A71S-01 17 65908288 65908288 A G BPTF Missense_Mutation p.R1430G 0.28 benign(0.006) TCGA-SX-A71S-01 17 77923648 77923648 C T TBC1D16 Missense_Mutation p.G425D 0.32 deleterious(0) probably_damaging(1) TCGA-SX-A71S-01 17 8243210 8243210 C A ODF4 5'UTR 0.67 TCGA-SX-A71S-01 18 60052147 60052147 C T TNFRSF11A Silent p.R577R 0.42 TCGA-SX-A71S-01 19 11917180 11917180 A - ZNF491 Frame_Shift_Del p.A139Pfs*118 0.32 TCGA-SX-A71S-01 19 12778987 12778987 G C WDR83OS 3'UTR 0.23 TCGA-SX-A71S-01 19 13035292 13035292 G A FARSA Missense_Mutation p.P415L 0.43 deleterious(0) probably_damaging(1) TCGA-SX-A71S-01 19 13035306 13035306 G T FARSA Missense_Mutation p.N410K 0.41 deleterious(0) probably_damaging(1) TCGA-SX-A71S-01 19 36632054 36632054 C T CAPNS1 Silent p.G47G 0.22 TCGA-SX-A71S-01 19 4433229 4433229 A T CHAF1A Missense_Mutation p.D789V 0.41 deleterious(0) possibly_damaging(0.696) TCGA-SX-A71S-01 19 54379028 54379028 C T MYADM 3'UTR 0.63 TCGA-SX-A71S-01 19 5691888 5691888 T A LONP1 3'UTR 0.31 TCGA-SX-A71S-01 19 58319468 58319468 T A ZNF552 Missense_Mutation p.K388N 0.46 deleterious(0.02) benign(0.089) TCGA-SX-A71S-01 1 100701020 100701020 C T DBT Missense_Mutation p.G75R 0.45 deleterious(0) probably_damaging(0.997) TCGA-SX-A71S-01 1 11105002 11105002 G - MASP2 Intron 0.33 TCGA-SX-A71S-01 1 115006034 115006034 C T TRIM33 Missense_Mutation p.E264K 0.36 deleterious(0.03) possibly_damaging(0.468) TCGA-SX-A71S-01 1 115006036 115006036 G T TRIM33 Nonsense_Mutation p.S263* 0.35 TCGA-SX-A71S-01 1 115251231 115251231 C A NRAS Missense_Mutation p.Q165H 0.40 tolerated(0.06) benign(0) TCGA-SX-A71S-01 1 12170173 12170173 G T TNFRSF8 Silent p.G196G 0.49 TCGA-SX-A71S-01 1 151260816 151260816 G T ZNF687 Silent p.R683R 0.55 TCGA-SX-A71S-01 1 151665956 151665956 A G SNX27 Silent p.K525K 0.46 TCGA-SX-A71S-01 1 152816237 152816237 T A LCE6A Nonstop_Mutation p.*81Rext*5 0.51 TCGA-SX-A71S-01 1 156713487 156713487 T A HDGF Missense_Mutation p.T241S 0.33 tolerated_low_confidence(0.2) benign(0.007) TCGA-SX-A71S-01 1 18961677 18961677 G A PAX7 Missense_Mutation p.E132K 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-SX-A71S-01 1 204237388 204237388 A G PLEKHA6 Missense_Mutation p.M52T 0.43 deleterious(0) benign(0.126) TCGA-SX-A71S-01 1 212617777 212617777 A G NENF Missense_Mutation p.H112R 0.37 tolerated(0.35) benign(0.016) TCGA-SX-A71S-01 1 21904098 21904098 T C ALPL Missense_Mutation p.L511P 0.25 tolerated(0.19) unknown(0) TCGA-SX-A71S-01 1 220160681 220160681 T A EPRS Silent p.G947G 0.44 TCGA-SX-A71S-01 1 220384147 220384147 G C RAB3GAP2 Missense_Mutation p.T169S 0.41 deleterious(0) benign(0.413) TCGA-SX-A71S-01 1 228362451 228362451 G A IBA57 Missense_Mutation p.G134S 0.45 tolerated(0.14) benign(0.012) TCGA-SX-A71S-01 1 27216294 27216294 C T GPN2 Silent p.K98K 0.48 TCGA-SX-A71S-01 1 39824842 39824842 A T MACF1 Missense_Mutation p.Q1988H 0.47 benign(0.042) TCGA-SX-A71S-01 1 40704556 40704556 G C RLF Missense_Mutation p.E1394D 0.46 tolerated(0.92) benign(0.002) TCGA-SX-A71S-01 1 51777848 51777848 C A TTC39A Missense_Mutation p.V104L 0.58 tolerated(0.18) benign(0.007) TCGA-SX-A71S-01 1 55181769 55181769 T C TTC4 Intron 0.40 TCGA-SX-A71S-01 1 76257870 76257871 - TT RABGGTB Frame_Shift_Ins p.C196Ffs*16 0.23 TCGA-SX-A71S-01 1 92731987 92731988 - T GLMN Nonsense_Mutation p.Y401* 0.25 TCGA-SX-A71S-01 20 34091926 34091926 G A CEP250 Missense_Mutation p.C1910Y 0.40 probably_damaging(0.967) TCGA-SX-A71S-01 20 39978760 39978760 T C LPIN3 Silent p.P275P 0.56 TCGA-SX-A71S-01 20 61940011 61940011 C T COL20A1 Missense_Mutation p.T298I 0.53 tolerated(0.54) benign(0.315) TCGA-SX-A71S-01 21 17172133 17172133 A G USP25 Missense_Mutation p.N205D 0.40 tolerated(0.3) possibly_damaging(0.621) TCGA-SX-A71S-01 21 30715024 30715024 G A BACH1 Missense_Mutation p.R694Q 0.52 tolerated(0.75) benign(0.001) TCGA-SX-A71S-01 21 38084911 38084911 G T SIM2 Missense_Mutation p.G113C 0.44 deleterious(0) probably_damaging(1) TCGA-SX-A71S-01 21 41559859 41559859 G A DSCAM Missense_Mutation p.S870F 0.37 deleterious(0) probably_damaging(0.99) TCGA-SX-A71S-01 21 45746816 45746816 T A PFKL 3'UTR 0.55 TCGA-SX-A71S-01 21 46875847 46875847 G A COL18A1 Missense_Mutation p.E135K 0.47 unknown(0) TCGA-SX-A71S-01 22 42059947 42059948 - T XRCC6 3'UTR 0.27 TCGA-SX-A71S-01 22 42281013 42281013 G T SREBF2 Missense_Mutation p.A736S 0.53 tolerated(0.38) benign(0.164) TCGA-SX-A71S-01 2 174820133 174820133 C T SP3 Silent p.Q369Q 0.46 TCGA-SX-A71S-01 2 179403955 179403955 G C TTN Missense_Mutation p.P32903A 0.43 TCGA-SX-A71S-01 2 179480386 179480386 T A TTN Missense_Mutation p.N16148Y 0.40 TCGA-SX-A71S-01 2 179623754 179623754 A G TTN Silent p.N3420N 0.34 TCGA-SX-A71S-01 2 18114138 18114138 C A KCNS3 3'UTR 0.45 TCGA-SX-A71S-01 2 202150021 202150021 C A CASP8 Missense_Mutation p.L488M 0.51 tolerated(0.18) probably_damaging(0.983) TCGA-SX-A71S-01 2 204304098 204304098 T A RAPH1 3'UTR 0.44 TCGA-SX-A71S-01 2 206058030 206058030 A G PARD3B Missense_Mutation p.K647R 0.49 deleterious(0.02) possibly_damaging(0.777) TCGA-SX-A71S-01 2 234622434 234622434 C G UGT1A5 Missense_Mutation p.P266R 0.57 deleterious(0) probably_damaging(1) TCGA-SX-A71S-01 2 239162065 239162065 C T PER2 Missense_Mutation p.A867T 0.09 tolerated(0.48) benign(0.01) TCGA-SX-A71S-01 2 241073396 241073396 C A MYEOV2 Missense_Mutation p.M61I 0.44 deleterious_low_confidence(0.02) benign(0.043) TCGA-SX-A71S-01 2 24896243 24896243 A T NCOA1 Missense_Mutation p.T89S 0.39 tolerated(0.36) benign(0.006) TCGA-SX-A71S-01 2 29295391 29295391 G A C2orf71 Silent p.S579S 0.45 TCGA-SX-A71S-01 3 100034986 100034986 G A TBC1D23 Missense_Mutation p.V548I 0.47 tolerated(0.15) benign(0.055) TCGA-SX-A71S-01 3 113376476 113376476 G A KIAA2018 Silent p.P1351P 0.52 TCGA-SX-A71S-01 3 121413729 121413729 G T GOLGB1 Missense_Mutation p.Q1881K 0.37 possibly_damaging(0.615) TCGA-SX-A71S-01 3 184428920 184428920 A C MAGEF1 Silent p.P230P 0.46 TCGA-SX-A71S-01 3 37366995 37366995 T A GOLGA4 Missense_Mutation p.F1228L 0.42 benign(0.03) TCGA-SX-A71S-01 3 38053124 38053124 C - PLCD1 Frame_Shift_Del p.D178Tfs*4 0.29 TCGA-SX-A71S-01 3 45942619 45942619 G T CCR9 Missense_Mutation p.K113N 0.42 tolerated(0.51) benign(0.016) TCGA-SX-A71S-01 3 47604006 47604006 G T CSPG5 3'UTR 0.09 TCGA-SX-A71S-01 3 50324199 50324199 C T LSMEM2 Silent p.C89C 0.47 TCGA-SX-A71S-01 3 55108306 55108306 A - CACNA2D3 3'UTR 0.38 TCGA-SX-A71S-01 4 134072496 134072496 G T PCDH10 Missense_Mutation p.V401L 0.43 tolerated(0.38) possibly_damaging(0.671) TCGA-SX-A71S-01 4 176556203 176556203 G T GPM6A Missense_Mutation p.H230Q 0.37 tolerated(0.2) probably_damaging(0.998) TCGA-SX-A71S-01 4 177098622 177098622 A G WDR17 Silent p.R1222R 0.39 TCGA-SX-A71S-01 4 76733474 76733474 T A USO1 Missense_Mutation p.D924E 0.38 tolerated(0.08) benign(0.028) TCGA-SX-A71S-01 4 83719707 83719707 C G SCD5 5'UTR 0.67 TCGA-SX-A71S-01 5 140857046 140857046 C T PCDHGC3 Missense_Mutation p.P455S 0.06 deleterious(0) probably_damaging(0.999) TCGA-SX-A71S-01 5 150726918 150726918 G C SLC36A2 Missense_Mutation p.S35C 0.43 deleterious(0.04) possibly_damaging(0.765) TCGA-SX-A71S-01 5 163420 163420 A T PLEKHG4B Missense_Mutation p.K722I 0.43 deleterious(0) probably_damaging(0.998) TCGA-SX-A71S-01 5 163421 163421 A T PLEKHG4B Missense_Mutation p.K722N 0.44 deleterious(0) probably_damaging(0.995) TCGA-SX-A71S-01 5 176395811 176395811 A T UIMC1 Silent p.L315L 0.41 TCGA-SX-A71S-01 5 37049326 37049326 A G NIPBL Missense_Mutation p.T2293A 0.50 tolerated(0.47) benign(0.004) TCGA-SX-A71S-01 5 66461904 66461904 G A MAST4 Silent p.E2299E 0.31 TCGA-SX-A71S-01 5 66479076 66479076 A G CD180 Missense_Mutation p.L532P 0.37 deleterious(0) probably_damaging(0.999) TCGA-SX-A71S-01 5 889883 889883 T - BRD9 Intron 0.27 TCGA-SX-A71S-01 6 117043373 117043373 T G KPNA5 Missense_Mutation p.Y281D 0.44 deleterious(0) probably_damaging(0.972) TCGA-SX-A71S-01 6 117127768 117127768 A T GPRC6A Missense_Mutation p.V367D 0.44 tolerated(0.31) benign(0.01) TCGA-SX-A71S-01 6 121770027 121770027 T A GJA1 3'UTR 0.40 TCGA-SX-A71S-01 6 125403660 125403660 G T RNF217 Missense_Mutation p.A249S 0.05 tolerated_low_confidence(0.77) benign(0.002) TCGA-SX-A71S-01 6 142691326 142691326 T A GPR126 Missense_Mutation p.N155K 0.43 deleterious(0) probably_damaging(0.999) TCGA-SX-A71S-01 6 158296128 158296128 G A SNX9 Missense_Mutation p.V74M 0.51 tolerated(0.14) benign(0.025) TCGA-SX-A71S-01 6 21597430 21597431 TT - SOX4 3'UTR 0.31 TCGA-SX-A71S-01 6 24423341 24423341 G C MRS2 Intron 0.50 TCGA-SX-A71S-01 6 31744458 31744458 G C VWA7 Missense_Mutation p.I33M 0.57 deleterious(0.01) possibly_damaging(0.655) TCGA-SX-A71S-01 6 32122818 32122818 G T PPT2 Silent p.G71G 0.51 TCGA-SX-A71S-01 6 37447844 37447844 G T CMTR1 Missense_Mutation p.D811Y 0.44 deleterious(0.02) benign(0.01) TCGA-SX-A71S-01 6 42204006 42204006 C A TRERF1 Silent p.P1001P 0.40 TCGA-SX-A71S-01 6 65301559 65301559 C A EYS Missense_Mutation p.D1401Y 0.39 deleterious(0.04) probably_damaging(0.984) TCGA-SX-A71S-01 7 116423414 116423414 A G MET Missense_Mutation p.Y1248C 0.66 deleterious(0) probably_damaging(1) TCGA-SX-A71S-01 7 128441373 128441373 C T CCDC136 Silent p.S160S 0.37 TCGA-SX-A71S-01 7 154746123 154746123 A C PAXIP1 Missense_Mutation p.I888S 0.56 tolerated(0.52) unknown(0) TCGA-SX-A71S-01 7 73280192 73280192 C T WBSCR28 Missense_Mutation p.P263S 0.41 deleterious(0.04) probably_damaging(0.932) TCGA-SX-A71S-01 7 82582455 82582455 G A PCLO Missense_Mutation p.P2605L 0.66 unknown(0) TCGA-SX-A71S-01 8 133584540 133584540 C G LRRC6 3'UTR 0.49 TCGA-SX-A71S-01 8 139165353 139165353 A G FAM135B Silent p.S455S 0.39 TCGA-SX-A71S-01 8 146156157 146156157 C A ZNF16 Missense_Mutation p.L672F 0.39 tolerated(0.06) possibly_damaging(0.844) TCGA-SX-A71S-01 8 1951635 1951635 G A KBTBD11 3'UTR 0.37 TCGA-SX-A71S-01 8 80677948 80677948 G C HEY1 Missense_Mutation p.C134W 0.39 deleterious(0) probably_damaging(0.999) TCGA-SX-A71S-01 9 101980479 101980480 - A ALG2 Frame_Shift_Ins p.V330Cfs*16 0.29 TCGA-SX-A71S-01 9 104302568 104302568 A G RNF20 Silent p.E71E 0.57 TCGA-SX-A71S-01 9 135787825 135787825 G T TSC1 Missense_Mutation p.H253N 0.37 deleterious(0.01) possibly_damaging(0.589) TCGA-SX-A71S-01 9 135973823 135973823 G A RALGDS 3'UTR 0.56 TCGA-SX-A71S-01 9 19080609 19080609 A T HAUS6 Nonsense_Mutation p.L311* 0.38 TCGA-SX-A71S-01 9 35741770 35741770 G A GBA2 Missense_Mutation p.H229Y 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-SX-A71S-01 9 39144299 39144299 G A CNTNAP3 Missense_Mutation p.S565L 0.42 deleterious(0) possibly_damaging(0.627) TCGA-SX-A71S-01 9 91606554 91606554 A C C9orf47 Missense_Mutation p.H139P 0.59 deleterious_low_confidence(0.02) benign(0.402) TCGA-SX-A71S-01 X 147014033 147014033 T C FMR1 Silent p.N240N 0.43 TCGA-SX-A71S-01 X 70683911 70683911 C T TAF1 3'Flank 0.46 TCGA-SX-A71S-01 X 85906115 85906115 A - DACH2 Frame_Shift_Del p.N240Mfs*48 0.31 TCGA-SX-A71U-01 10 112572059 112572059 C A RBM20 Missense_Mutation p.S635Y 0.48 deleterious(0) probably_damaging(0.998) TCGA-SX-A71U-01 10 45499114 45499114 C T ZNF22 Nonsense_Mutation p.Q100* 0.22 TCGA-SX-A71U-01 10 45657562 45657562 G T RP11-445N18.5 3'Flank 0.13 TCGA-SX-A71U-01 10 459927 459927 C - DIP2C Frame_Shift_Del p.G328Afs*10 0.29 TCGA-SX-A71U-01 10 75911070 75911070 A C ADK Missense_Mutation p.K12Q 0.30 tolerated_low_confidence(0.06) unknown(0) TCGA-SX-A71U-01 10 86185593 86185593 T G CCSER2 Missense_Mutation p.H604Q 0.29 tolerated(0.08) benign(0.394) TCGA-SX-A71U-01 10 93222017 93222017 A C HECTD2 Intron 0.35 TCGA-SX-A71U-01 10 93222035 93222035 C T HECTD2 Intron 0.42 TCGA-SX-A71U-01 11 102706805 102706805 G A MMP3 3'UTR 0.36 TCGA-SX-A71U-01 11 121481777 121481794 GTTTTCAGTGATCCCACC - SORL1 Splice_Site p.X1747_splice 0.15 TCGA-SX-A71U-01 11 1972132 1972133 CC - MRPL23 Frame_Shift_Del p.L9Vfs*53 0.26 TCGA-SX-A71U-01 11 68358134 68358134 T - PPP6R3 Frame_Shift_Del p.F580Lfs*98 0.19 TCGA-SX-A71U-01 11 72552500 72552500 G A FCHSD2 Silent p.N685N 0.42 TCGA-SX-A71U-01 11 82877707 82877707 A G PCF11 Missense_Mutation p.S590G 0.24 tolerated(1) benign(0.001) TCGA-SX-A71U-01 12 116418708 116418709 - T MED13L Frame_Shift_Ins p.D1738Gfs*2 0.18 TCGA-SX-A71U-01 12 14577946 14577946 A G ATF7IP Missense_Mutation p.E366G 0.57 deleterious_low_confidence(0.01) benign(0.01) TCGA-SX-A71U-01 12 41967250 41967250 A C PDZRN4 Missense_Mutation p.K890T 0.61 deleterious(0) probably_damaging(0.997) TCGA-SX-A71U-01 12 42768782 42768782 T C PPHLN1 Silent p.D139D 0.54 TCGA-SX-A71U-01 12 45610044 45610044 G A ANO6 5'UTR 0.69 TCGA-SX-A71U-01 12 46756297 46756297 C G SLC38A2 Missense_Mutation p.R435T 0.25 deleterious(0.04) possibly_damaging(0.456) TCGA-SX-A71U-01 12 49224939 49224939 G T DDX23 Missense_Mutation p.A742D 0.58 deleterious(0.01) possibly_damaging(0.737) TCGA-SX-A71U-01 12 6574108 6574108 C T VAMP1 Splice_Site p.X97_splice 0.37 TCGA-SX-A71U-01 12 72274296 72274296 T C TBC1D15 Silent p.G84G 0.50 TCGA-SX-A71U-01 13 111090980 111090980 G A COL4A2 Missense_Mutation p.G293R 0.28 probably_damaging(0.999) TCGA-SX-A71U-01 13 42830507 42830507 C A FHP1 RNA 0.37 TCGA-SX-A71U-01 14 58965662 58965663 - T KIAA0586 Frame_Shift_Ins p.D1439* 0.31 TCGA-SX-A71U-01 14 68331840 68331840 G A RAD51B Missense_Mutation p.A146T 0.48 tolerated(0.09) possibly_damaging(0.574) TCGA-SX-A71U-01 14 69259682 69259682 G A ZFP36L1 5'UTR 0.50 TCGA-SX-A71U-01 14 96783528 96783528 A G ATG2B Missense_Mutation p.L1055P 0.41 deleterious(0.01) probably_damaging(0.974) TCGA-SX-A71U-01 15 34519983 34519983 C - EMC4 Frame_Shift_Del p.P98Lfs*3 0.20 TCGA-SX-A71U-01 15 49170567 49170567 C A EID1 Missense_Mutation p.P65Q 0.30 deleterious(0) possibly_damaging(0.839) TCGA-SX-A71U-01 15 52517329 52517329 A G MYO5C Missense_Mutation p.M1103T 0.35 tolerated(0.45) benign(0.002) TCGA-SX-A71U-01 15 56207818 56207818 A - NEDD4 Frame_Shift_Del p.K405Sfs*25 0.25 TCGA-SX-A71U-01 15 72638659 72638659 A G HEXA Silent p.P446P 0.40 TCGA-SX-A71U-01 15 93563534 93563534 G C CHD2 Intron 0.24 TCGA-SX-A71U-01 16 84158116 84158116 C G HSDL1 3'UTR 0.21 TCGA-SX-A71U-01 16 89929899 89929899 G A SPIRE2 Missense_Mutation p.V531M 0.58 deleterious(0) probably_damaging(0.986) TCGA-SX-A71U-01 17 27591411 27591411 A G NUFIP2 3'UTR 0.09 TCGA-SX-A71U-01 17 41478483 41478483 G C ARL4D 3'UTR 0.23 TCGA-SX-A71U-01 17 79663907 79663907 C A HGS Silent p.A587A 0.32 TCGA-SX-A71U-01 17 79827786 79827786 T G ARHGDIA Silent p.T7T 0.27 TCGA-SX-A71U-01 17 80320408 80320408 G T TEX19 Nonsense_Mutation p.E128* 0.39 TCGA-SX-A71U-01 18 56050535 56050535 A T NEDD4L Nonsense_Mutation p.K804* 0.35 TCGA-SX-A71U-01 19 19625679 19625679 G T TSSK6 Silent p.I186I 0.35 TCGA-SX-A71U-01 19 23927682 23927682 T G ZNF681 Missense_Mutation p.K224Q 0.42 deleterious(0.01) probably_damaging(0.937) TCGA-SX-A71U-01 19 45912507 45912507 G A CD3EAP Silent p.K427K 0.38 TCGA-SX-A71U-01 19 4891365 4891365 C T ARRDC5 Missense_Mutation p.R241Q 0.35 tolerated(0.55) benign(0.097) TCGA-SX-A71U-01 19 57766204 57766204 C T ZNF805 3'Flank 0.36 TCGA-SX-A71U-01 1 114483624 114483626 TGC - HIPK1 In_Frame_Del p.C207del 0.24 TCGA-SX-A71U-01 1 11561256 11561256 C T PTCHD2 Silent p.T69T 0.37 TCGA-SX-A71U-01 1 120300026 120300026 G A HMGCS2 Nonsense_Mutation p.Q296* 0.26 TCGA-SX-A71U-01 1 156876561 156876561 G T PEAR1 Missense_Mutation p.C178F 0.38 deleterious(0) probably_damaging(0.99) TCGA-SX-A71U-01 1 166838685 166838685 G C TADA1 Missense_Mutation p.P77A 0.40 tolerated(0.25) benign(0.134) TCGA-SX-A71U-01 1 167871039 167871039 A T ADCY10 Missense_Mutation p.D99E 0.30 tolerated(0.06) probably_damaging(1) TCGA-SX-A71U-01 1 171526383 171526383 G T PRRC2C Missense_Mutation p.W1709L 0.31 unknown(0) TCGA-SX-A71U-01 1 178820098 178820098 G T ANGPTL1 3'UTR 0.38 TCGA-SX-A71U-01 1 183604774 183604774 C A ARPC5 Silent p.S7S 0.30 TCGA-SX-A71U-01 1 186101461 186101461 A C HMCN1 Missense_Mutation p.N4411T 0.29 probably_damaging(0.996) TCGA-SX-A71U-01 1 18808064 18808064 C T KLHDC7A Missense_Mutation p.P197S 0.24 tolerated(0.14) benign(0.048) TCGA-SX-A71U-01 1 205211011 205211011 C A TMCC2 Missense_Mutation p.H196N 0.43 deleterious(0.04) benign(0.346) TCGA-SX-A71U-01 1 31744229 31744229 T A SNRNP40 Missense_Mutation p.T258S 0.21 tolerated(0.25) benign(0.097) TCGA-SX-A71U-01 1 38197252 38197252 A T EPHA10 Silent p.G498G 0.35 TCGA-SX-A71U-01 1 43649431 43649431 C A WDR65 Missense_Mutation p.T215N 0.37 deleterious(0.01) probably_damaging(0.909) TCGA-SX-A71U-01 1 45278737 45278737 G T BTBD19 Splice_Site p.X161_splice 0.28 TCGA-SX-A71U-01 20 50701317 50701318 - G ZFP64 Frame_Shift_Ins p.K573Qfs*11 0.27 TCGA-SX-A71U-01 22 42781205 42781205 C A NFAM1 Missense_Mutation p.D259Y 0.36 deleterious(0.01) probably_damaging(0.98) TCGA-SX-A71U-01 2 109300514 109300514 A T LIMS1 3'UTR 0.40 TCGA-SX-A71U-01 2 179426840 179426840 T A TTN Missense_Mutation p.T28007S 0.24 TCGA-SX-A71U-01 2 190717493 190717493 A C PMS1 Missense_Mutation p.D271A 0.35 deleterious(0.01) possibly_damaging(0.685) TCGA-SX-A71U-01 2 190717495 190717495 A T PMS1 Missense_Mutation p.I272F 0.36 deleterious(0) probably_damaging(0.967) TCGA-SX-A71U-01 2 191797508 191797508 A G GLS Intron 0.30 TCGA-SX-A71U-01 2 191873805 191873805 C G STAT1 Missense_Mutation p.A53P 0.24 deleterious(0) probably_damaging(1) TCGA-SX-A71U-01 2 220251040 220251040 C T DNPEP Missense_Mutation p.D143N 0.25 deleterious(0) probably_damaging(0.994) TCGA-SX-A71U-01 2 228566972 228566972 T C SLC19A3 Silent p.L21L 0.34 TCGA-SX-A71U-01 2 234622288 234622288 T G UGT1A5 Silent p.P217P 0.36 TCGA-SX-A71U-01 2 54482228 54482228 A T TSPYL6 Missense_Mutation p.F354Y 0.35 deleterious(0.01) probably_damaging(0.946) TCGA-SX-A71U-01 2 58425781 58425781 G A FANCL Missense_Mutation p.P163L 0.27 deleterious(0) probably_damaging(0.999) TCGA-SX-A71U-01 2 63175859 63175859 A G EHBP1 Silent p.G661G 0.29 TCGA-SX-A71U-01 2 85823986 85823986 G A RNF181 Missense_Mutation p.E87K 0.27 deleterious(0.01) possibly_damaging(0.904) TCGA-SX-A71U-01 2 85823987 85823987 A C RNF181 Missense_Mutation p.E87A 0.26 deleterious(0.01) possibly_damaging(0.904) TCGA-SX-A71U-01 2 98275079 98275079 C A ACTR1B Silent p.V156V 0.08 TCGA-SX-A71U-01 3 101136524 101136524 G T SENP7 Nonsense_Mutation p.S132* 0.24 TCGA-SX-A71U-01 3 1337389 1337389 G C CNTN6 Missense_Mutation p.E187Q 0.34 tolerated(0.2) benign(0.027) TCGA-SX-A71U-01 3 183639163 183639163 G C ABCC5 Silent p.V1413V 0.35 TCGA-SX-A71U-01 3 48463585 48463585 A G PLXNB1 Silent p.A483A 0.41 TCGA-SX-A71U-01 3 77626674 77626674 T C ROBO2 Missense_Mutation p.L762P 0.35 deleterious(0.05) probably_damaging(0.928) TCGA-SX-A71U-01 4 123277058 123277059 - A KIAA1109 Frame_Shift_Ins p.T4806Nfs*13 0.28 TCGA-SX-A71U-01 4 156060 156060 G T ZNF718 RNA 0.24 TCGA-SX-A71U-01 4 159627888 159627888 G T ETFDH Missense_Mutation p.G526C 0.30 deleterious(0) probably_damaging(1) TCGA-SX-A71U-01 4 174213365 174213365 A C GALNT7 Missense_Mutation p.K232Q 0.35 tolerated(0.07) probably_damaging(0.954) TCGA-SX-A71U-01 4 3447058 3447058 C A HGFAC Nonsense_Mutation p.Y361* 0.41 TCGA-SX-A71U-01 4 40440004 40440004 C T RBM47 Missense_Mutation p.G303S 0.47 deleterious(0.01) possibly_damaging(0.829) TCGA-SX-A71U-01 4 88091657 88091657 C A KLHL8 Missense_Mutation p.W440L 0.24 deleterious(0) probably_damaging(1) TCGA-SX-A71U-01 5 102509564 102509564 A G PPIP5K2 Missense_Mutation p.Y806C 0.33 deleterious(0) probably_damaging(0.997) TCGA-SX-A71U-01 5 140034273 140034273 G T IK Nonsense_Mutation p.E200* 0.38 TCGA-SX-A71U-01 5 147774315 147774315 C T FBXO38 5'UTR 0.33 TCGA-SX-A71U-01 5 37024711 37024728 AGAGTAATAAAGATTCTC - NIPBL In_Frame_Del p.V1868_R1873del 0.24 TCGA-SX-A71U-01 6 110726039 110726039 A G DDO Silent p.F160F 0.43 TCGA-SX-A71U-01 6 12125716 12125716 G - HIVEP1 Frame_Shift_Del p.K1896Nfs*12 0.27 TCGA-SX-A71U-01 6 13639868 13639868 T C RANBP9 Silent p.P484P 0.40 TCGA-SX-A71U-01 6 150059828 150059828 T - NUP43 Frame_Shift_Del p.I197Yfs*17 0.28 TCGA-SX-A71U-01 6 151907203 151907203 C T CCDC170 Silent p.N424N 0.35 TCGA-SX-A71U-01 6 160328746 160328746 G T MAS1 Missense_Mutation p.E253D 0.43 tolerated(0.47) benign(0.044) TCGA-SX-A71U-01 6 17601243 17601243 C A FAM8A1 Silent p.G201G 0.32 TCGA-SX-A71U-01 6 18166565 18166565 C G KDM1B Missense_Mutation p.P125A 0.39 tolerated(0.28) possibly_damaging(0.765) TCGA-SX-A71U-01 6 26043884 26043884 A G HIST1H2BB Translation_Start_Site p.M1? 0.44 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-SX-A71U-01 6 27368767 27368767 T C ZNF391 Silent p.T206T 0.39 TCGA-SX-A71U-01 6 43266308 43266308 G T SLC22A7 Missense_Mutation p.R71L 0.43 tolerated(0.36) benign(0.033) TCGA-SX-A71U-01 6 5999362 5999369 ATCCCACA - NRN1 Frame_Shift_Del p.M90Kfs*83 0.35 TCGA-SX-A71U-01 7 100482162 100482162 G A SRRT Missense_Mutation p.D311N 0.27 tolerated(0.27) benign(0.122) TCGA-SX-A71U-01 7 1132705 1132705 C G GPER1 3'UTR 0.41 TCGA-SX-A71U-01 7 120935571 120935571 T C CPED1 Silent p.Y982Y 0.27 TCGA-SX-A71U-01 7 151860074 151860074 A T KMT2C Missense_Mutation p.S3530T 0.20 benign(0.053) TCGA-SX-A71U-01 7 23296688 23296688 G T GPNMB Intron 0.40 TCGA-SX-A71U-01 7 23352352 23352352 G A IGF2BP3 Splice_Site p.X547_splice 0.49 TCGA-SX-A71U-01 7 23352353 23352353 C T IGF2BP3 Splice_Site p.X547_splice 0.50 TCGA-SX-A71U-01 7 27565775 27565775 A T HIBADH 3'UTR 0.54 TCGA-SX-A71U-01 7 74146861 74146861 C A GTF2I Missense_Mutation p.P388T 0.23 tolerated(0.36) benign(0.074) TCGA-SX-A71U-01 7 75623897 75623897 C T STYXL1 3'Flank 0.18 TCGA-SX-A71U-01 7 99821281 99821281 G A GATS Missense_Mutation p.S151L 0.22 deleterious(0.04) possibly_damaging(0.622) TCGA-SX-A71U-01 7 99955835 99955835 C G PILRB Intron 0.20 TCGA-SX-A71U-01 8 145979704 145979704 C T ZNF251 Silent p.E12E 0.48 TCGA-SX-A71U-01 8 23305329 23305329 C G ENTPD4 Silent p.V92V 0.49 TCGA-SX-A71U-01 8 28206326 28206326 C G ZNF395 Missense_Mutation p.K484N 0.26 deleterious(0) probably_damaging(0.999) TCGA-SX-A71U-01 8 39080665 39080665 T G ADAM32 Missense_Mutation p.I478S 0.31 tolerated(0.42) benign(0.001) TCGA-SX-A71U-01 8 7308713 7308713 A G SPAG11B Intron 0.28 TCGA-SX-A71U-01 9 112963539 112963539 G A C9orf152 Nonsense_Mutation p.Q137* 0.36 TCGA-SX-A71U-01 9 125424669 125424669 T G OR1L1 Silent p.V225V 0.38 TCGA-SX-A71U-01 9 131702760 131702760 C A PHYHD1 Missense_Mutation p.S183Y 0.41 deleterious_low_confidence(0.01) benign(0.354) TCGA-SX-A71U-01 9 15460051 15460051 A C SNAPC3 3'UTR 0.29 TCGA-SX-A71U-01 9 88642594 88642594 A T GOLM1 3'UTR 0.13 TCGA-SX-A71U-01 X 101623901 101623901 C A NXF2B Intron 0.33 TCGA-SX-A71U-01 X 129630194 129630194 G T RP1-274L7.1 Intron 0.50 TCGA-SX-A71U-01 X 40496278 40496278 A G CXorf38 Missense_Mutation p.V201A 0.77 tolerated(0.77) benign(0.002) TCGA-SX-A71U-01 X 51149990 51149992 CTG - CXorf67 In_Frame_Del p.A43del 0.74 TCGA-SX-A71U-01 X 53112145 53112145 G C TSPYL2 Silent p.A155A 0.82 TCGA-SX-A71V-01 10 121339523 121339523 C G TIAL1 Splice_Site p.X141_splice 0.42 TCGA-SX-A71V-01 10 29756744 29756744 T A SVIL Missense_Mutation p.E1968D 0.34 deleterious(0) probably_damaging(0.999) TCGA-SX-A71V-01 10 3824324 3824324 T C KLF6 Missense_Mutation p.D62G 0.38 deleterious(0.01) probably_damaging(0.98) TCGA-SX-A71V-01 10 72083705 72083705 G C LRRC20 Missense_Mutation p.S105C 0.47 deleterious(0) possibly_damaging(0.902) TCGA-SX-A71V-01 10 73550921 73550921 G A CDH23 5'Flank 0.38 TCGA-SX-A71V-01 10 79793589 79793589 G T RPS24 5'UTR 0.38 TCGA-SX-A71V-01 10 91195920 91195920 T A SLC16A12 Silent p.P395P 0.35 TCGA-SX-A71V-01 10 98803147 98803147 G A SLIT1 Silent p.T659T 0.32 TCGA-SX-A71V-01 11 100843950 100843950 T A ARHGAP42 Missense_Mutation p.L532H 0.46 deleterious(0) probably_damaging(0.998) TCGA-SX-A71V-01 11 111784216 111784216 T C HSPB2 Missense_Mutation p.V49A 0.39 tolerated(0.17) benign(0.016) TCGA-SX-A71V-01 11 118771955 118771955 G C BCL9L Missense_Mutation p.Q833E 0.33 possibly_damaging(0.535) TCGA-SX-A71V-01 11 129034246 129034246 G A ARHGAP32 Missense_Mutation p.R65W 0.25 deleterious(0) probably_damaging(0.976) TCGA-SX-A71V-01 11 16776551 16776551 T G C11orf58 Missense_Mutation p.L151R 0.33 tolerated(0.54) benign(0.332) TCGA-SX-A71V-01 11 209726 209726 A C RIC8A Missense_Mutation p.Y151S 0.29 tolerated(0.42) benign(0.004) TCGA-SX-A71V-01 11 2799217 2799217 G C KCNQ1 Missense_Mutation p.D582H 0.47 deleterious(0.01) possibly_damaging(0.838) TCGA-SX-A71V-01 11 34162694 34162694 T A NAT10 Missense_Mutation p.I884N 0.35 deleterious(0) possibly_damaging(0.653) TCGA-SX-A71V-01 11 65547710 65547710 A G AP5B1 Missense_Mutation p.L85P 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-SX-A71V-01 11 77378053 77378054 - CA RSF1 Frame_Shift_Ins p.G1412Vfs*16 0.26 TCGA-SX-A71V-01 11 92613971 92613971 C T FAT3 Missense_Mutation p.P4068S 0.39 probably_damaging(0.999) TCGA-SX-A71V-01 12 27908227 27908227 T A MRPS35 Silent p.A272A 0.21 TCGA-SX-A71V-01 12 29908774 29908774 A G TMTC1 Missense_Mutation p.V200A 0.21 tolerated(0.92) benign(0.001) TCGA-SX-A71V-01 12 53242632 53242632 C G KRT78 Missense_Mutation p.G28A 0.64 tolerated(0.42) unknown(0) TCGA-SX-A71V-01 12 68552039 68552039 T G IFNG Missense_Mutation p.N39H 0.51 deleterious(0) possibly_damaging(0.469) TCGA-SX-A71V-01 12 69747002 69747002 C T LYZ 3'UTR 0.54 TCGA-SX-A71V-01 13 42882690 42882690 A T AKAP11 Missense_Mutation p.S1740C 0.55 deleterious(0) probably_damaging(1) TCGA-SX-A71V-01 13 75869072 75869072 G T TBC1D4 Silent p.I1078I 0.29 TCGA-SX-A71V-01 14 102368158 102368158 G C PPP2R5C Missense_Mutation p.E350Q 0.41 tolerated(0.31) benign(0.432) TCGA-SX-A71V-01 14 23344406 23344406 G A LRP10 Missense_Mutation p.G120R 0.20 deleterious(0.03) probably_damaging(0.983) TCGA-SX-A71V-01 14 23344686 23344686 G C LRP10 Missense_Mutation p.D177H 0.26 deleterious(0.04) benign(0.01) TCGA-SX-A71V-01 14 23634563 23634563 G A SLC7A8 Silent p.L147L 0.30 TCGA-SX-A71V-01 14 51226790 51226790 C T NIN Silent p.K728K 0.36 TCGA-SX-A71V-01 14 68192868 68192868 C A RDH12 Missense_Mutation p.H148Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-SX-A71V-01 14 94469582 94469582 G T LINC00521 RNA 0.32 TCGA-SX-A71V-01 15 31294200 31294200 G - TRPM1 Frame_Shift_Del p.P1585Hfs*15 0.20 TCGA-SX-A71V-01 15 45668863 45668863 A C GATM Nonsense_Mutation p.L75* 0.42 TCGA-SX-A71V-01 15 49716529 49716529 C G FGF7 Missense_Mutation p.T12S 0.40 tolerated(0.27) benign(0.001) TCGA-SX-A71V-01 16 30982956 30982956 G A SETD1A Missense_Mutation p.V1092M 0.20 unknown(0) TCGA-SX-A71V-01 16 31885077 31885077 C A ZNF267 5'Flank 0.28 TCGA-SX-A71V-01 16 4628972 4628972 A C C16orf96 Silent p.T729T 0.15 TCGA-SX-A71V-01 16 50583410 50583410 G A NKD1 Missense_Mutation p.G46S 0.54 tolerated(0.37) benign(0.012) TCGA-SX-A71V-01 16 57513595 57513595 C T DOK4 5'UTR 0.50 TCGA-SX-A71V-01 16 68057034 68057034 G A DDX28 Silent p.L24L 0.50 TCGA-SX-A71V-01 16 69820957 69820957 T A WWP2 Missense_Mutation p.F15Y 0.24 tolerated(1) benign(0.04) TCGA-SX-A71V-01 17 14110151 14110151 T A COX10 Missense_Mutation p.L318H 0.46 deleterious(0) probably_damaging(0.999) TCGA-SX-A71V-01 17 18151250 18151250 A G FLII Missense_Mutation p.M763T 0.52 tolerated(0.29) benign(0.266) TCGA-SX-A71V-01 17 27370217 27370217 T C PIPOX 5'UTR 0.17 TCGA-SX-A71V-01 17 40706580 40706580 A - HSD17B1 Frame_Shift_Del p.N233Tfs*123 0.22 TCGA-SX-A71V-01 17 4799846 4799846 T C MINK1 Silent p.D1246D 0.29 TCGA-SX-A71V-01 17 48614355 48614355 C A EPN3 Missense_Mutation p.H146Q 0.17 tolerated(1) benign(0.009) TCGA-SX-A71V-01 17 73887171 73887171 T A TRIM65 Missense_Mutation p.N415Y 0.37 deleterious(0) probably_damaging(1) TCGA-SX-A71V-01 18 192871 192871 A - USP14 Frame_Shift_Del p.M146Wfs*62 0.31 TCGA-SX-A71V-01 18 19995661 19995661 G - CTAGE1 Frame_Shift_Del p.S705Ffs*15 0.24 TCGA-SX-A71V-01 18 29340393 29340393 G A SLC25A52 Nonsense_Mutation p.R88* 0.30 TCGA-SX-A71V-01 19 13372413 13372413 G A CACNA1A Silent p.D1367D 0.39 TCGA-SX-A71V-01 19 22585658 22585658 G A ZNF98 Silent p.I62I 0.14 TCGA-SX-A71V-01 19 24288840 24288840 A T ZNF254 Missense_Mutation p.L43F 0.33 deleterious(0.01) probably_damaging(1) TCGA-SX-A71V-01 19 34887252 34887252 G A GPI Missense_Mutation p.R381H 0.30 deleterious_low_confidence(0.04) probably_damaging(0.967) TCGA-SX-A71V-01 19 36279024 36279024 C T ARHGAP33 Missense_Mutation p.S1025F 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-SX-A71V-01 19 36728978 36728978 A T ZNF146 3'UTR 0.36 TCGA-SX-A71V-01 19 39409424 39409424 A G SARS2 Silent p.L265L 0.33 TCGA-SX-A71V-01 19 49868766 49868766 G T DKKL1 Missense_Mutation p.G62C 0.34 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-SX-A71V-01 19 7605828 7605828 G T PNPLA6 Missense_Mutation p.R281L 0.07 deleterious(0) possibly_damaging(0.682) TCGA-SX-A71V-01 1 107599362 107599362 C T PRMT6 Missense_Mutation p.L9F 0.42 tolerated_low_confidence(0.14) possibly_damaging(0.86) TCGA-SX-A71V-01 1 113058824 113058824 C A WNT2B Missense_Mutation p.R156S 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-SX-A71V-01 1 114483304 114483304 T A HIPK1 Missense_Mutation p.F100Y 0.41 tolerated(1) benign(0.162) TCGA-SX-A71V-01 1 118169003 118169004 - T FAM46C 3'UTR 0.28 TCGA-SX-A71V-01 1 153283087 153283087 C T PGLYRP3 Missense_Mutation p.D19N 0.37 tolerated(0.16) benign(0.019) TCGA-SX-A71V-01 1 153507124 153507124 G C S100A6 3'UTR 0.41 TCGA-SX-A71V-01 1 153974267 153974267 G C NUP210L Missense_Mutation p.Q1709E 0.30 tolerated(0.32) benign(0.05) TCGA-SX-A71V-01 1 154247707 154247707 T C HAX1 Missense_Mutation p.S212P 0.37 deleterious(0) probably_damaging(0.97) TCGA-SX-A71V-01 1 156233183 156233183 C G SMG5 Intron 0.31 TCGA-SX-A71V-01 1 161771953 161771953 A G ATF6 Missense_Mutation p.N267S 0.32 tolerated(0.28) benign(0.001) TCGA-SX-A71V-01 1 16721767 16721767 C G SZRD1 3'UTR 0.24 TCGA-SX-A71V-01 1 180910417 180910417 A T KIAA1614 Missense_Mutation p.H1052L 0.34 deleterious(0.01) possibly_damaging(0.843) TCGA-SX-A71V-01 1 181452978 181452978 C G CACNA1E Missense_Mutation p.S33W 0.32 deleterious(0) possibly_damaging(0.854) TCGA-SX-A71V-01 1 196303029 196303029 C - KCNT2 Frame_Shift_Del p.D649Tfs*17 0.31 TCGA-SX-A71V-01 1 205492272 205492272 C T CDK18 Intron 0.17 TCGA-SX-A71V-01 1 207715843 207715848 TGGCTT - CR1 In_Frame_Del p.G719_F720del 0.18 TCGA-SX-A71V-01 1 225539372 225539372 C T DNAH14 Nonsense_Mutation p.Q2878* 0.33 TCGA-SX-A71V-01 1 228521014 228521017 CAAG - OBSCN Frame_Shift_Del p.K6240* 0.44 TCGA-SX-A71V-01 1 232615472 232615472 A C SIPA1L2 Missense_Mutation p.D662E 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-SX-A71V-01 1 24768627 24768627 T A NIPAL3 Missense_Mutation p.L82Q 0.30 deleterious(0) probably_damaging(0.984) TCGA-SX-A71V-01 1 74808658 74808658 C A FPGT-TNNI3K Missense_Mutation p.T386N 0.39 deleterious(0) probably_damaging(0.997) TCGA-SX-A71V-01 20 43726574 43726574 A G KCNS1 Missense_Mutation p.I280T 0.27 deleterious(0.02) possibly_damaging(0.517) TCGA-SX-A71V-01 20 55026927 55026927 G T CASS4 Missense_Mutation p.S232I 0.24 deleterious(0) benign(0.158) TCGA-SX-A71V-01 21 47544599 47544599 G T COL6A2 Missense_Mutation p.R569L 0.40 deleterious(0.01) probably_damaging(0.987) TCGA-SX-A71V-01 22 51160753 51160753 A T SHANK3 Missense_Mutation p.S1514C 0.35 probably_damaging(0.997) TCGA-SX-A71V-01 2 175945471 175945471 T G ATF2 Missense_Mutation p.N403T 0.44 deleterious(0.05) benign(0.436) TCGA-SX-A71V-01 2 179398278 179398278 G - TTN Frame_Shift_Del p.P34355Lfs*7 0.35 TCGA-SX-A71V-01 2 179575930 179575930 G C TTN Missense_Mutation p.P9345A 0.54 TCGA-SX-A71V-01 2 190428539 190428539 T A SLC40A1 Silent p.V391V 0.21 TCGA-SX-A71V-01 2 219127340 219127340 G T GPBAR1 5'UTR 0.50 TCGA-SX-A71V-01 2 37076503 37076503 A C STRN 3'UTR 0.50 TCGA-SX-A71V-01 2 68740321 68740322 - A APLF Frame_Shift_Ins p.I152Nfs*11 0.22 TCGA-SX-A71V-01 2 74043598 74043598 T G C2orf78 Missense_Mutation p.Y750D 0.22 tolerated(0.82) benign(0.002) TCGA-SX-A71V-01 3 125266348 125266348 T C OSBPL11 Silent p.V581V 0.52 TCGA-SX-A71V-01 3 140397260 140397260 C T TRIM42 Silent p.C63C 0.46 TCGA-SX-A71V-01 3 140675388 140675388 G A SLC25A36 Missense_Mutation p.A21T 0.16 deleterious(0.02) benign(0.192) TCGA-SX-A71V-01 3 14861143 14861143 G A FGD5 Missense_Mutation p.V189I 0.43 tolerated_low_confidence(0.34) benign(0.002) TCGA-SX-A71V-01 3 171362716 171362716 T C PLD1 Missense_Mutation p.M843V 0.21 deleterious(0.02) benign(0.005) TCGA-SX-A71V-01 3 195453023 195453023 A G MUC20 Missense_Mutation p.T517A 0.39 tolerated(0.1) unknown(0) TCGA-SX-A71V-01 3 32032601 32032601 T C ZNF860 3'UTR 0.55 TCGA-SX-A71V-01 3 36898563 36898563 C G TRANK1 Missense_Mutation p.G840R 0.34 deleterious(0.03) benign(0.392) TCGA-SX-A71V-01 3 43596958 43596958 T C ANO10 Missense_Mutation p.T494A 0.29 tolerated(0.14) probably_damaging(0.949) TCGA-SX-A71V-01 3 52422336 52422336 G C DNAH1 Missense_Mutation p.V3053L 0.43 probably_damaging(0.961) TCGA-SX-A71V-01 4 121702315 121702315 G A PRDM5 Missense_Mutation p.L476F 0.25 deleterious(0.03) probably_damaging(1) TCGA-SX-A71V-01 4 3230614 3230614 C A HTT Silent p.R2663R 0.33 TCGA-SX-A71V-01 4 47455158 47455158 T C COMMD8 Missense_Mutation p.N150S 0.35 tolerated(0.07) benign(0.175) TCGA-SX-A71V-01 4 7056602 7056602 T C TADA2B Silent p.L362L 0.42 TCGA-SX-A71V-01 4 71255663 71255664 - AA SMR3B 3'UTR 0.23 TCGA-SX-A71V-01 4 71768265 71768265 G T MOB1B Intron 0.23 TCGA-SX-A71V-01 4 76957210 76957210 T A CXCL11 5'UTR 0.33 TCGA-SX-A71V-01 5 109155930 109155930 A C MAN2A1 Missense_Mutation p.T780P 0.44 tolerated(0.36) possibly_damaging(0.486) TCGA-SX-A71V-01 5 121758736 121758736 G A SNCAIP Missense_Mutation p.V102M 0.31 tolerated(0.1) possibly_damaging(0.608) TCGA-SX-A71V-01 5 138378379 138378379 G T SIL1 Missense_Mutation p.S128Y 0.37 deleterious(0.01) probably_damaging(0.959) TCGA-SX-A71V-01 5 140720354 140720354 T C PCDHGA2 Missense_Mutation p.Y606H 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-SX-A71V-01 5 145719332 145719332 C T POU4F3 Silent p.G114G 0.46 TCGA-SX-A71V-01 5 16463272 16463272 T C ZNF622 Missense_Mutation p.K332E 0.33 deleterious(0) probably_damaging(0.999) TCGA-SX-A71V-01 5 169018070 169018071 - G SPDL1 Nonsense_Mutation p.Y60* 0.29 TCGA-SX-A71V-01 5 172196606 172196606 G T DUSP1 Silent p.S235S 0.34 TCGA-SX-A71V-01 5 74807768 74807768 C - COL4A3BP 5'UTR 0.27 TCGA-SX-A71V-01 5 9042976 9042976 G T SEMA5A 3'UTR 0.28 TCGA-SX-A71V-01 5 9052124 9052124 C A SEMA5A Missense_Mutation p.W902C 0.35 deleterious(0) probably_damaging(1) TCGA-SX-A71V-01 6 29634002 29634002 T G MOG Silent p.T170T 0.41 TCGA-SX-A71V-01 6 30681674 30681674 G C MDC1 Silent p.S141S 0.39 TCGA-SX-A71V-01 6 36027090 36027090 A C MAPK14 Missense_Mutation p.T91P 0.44 deleterious(0.01) probably_damaging(0.955) TCGA-SX-A71V-01 6 36027091 36027091 C A MAPK14 Missense_Mutation p.T91K 0.44 deleterious(0.05) possibly_damaging(0.87) TCGA-SX-A71V-01 6 36823708 36823708 T - PPIL1 Frame_Shift_Del p.I128Ffs*9 0.26 TCGA-SX-A71V-01 6 56346936 56346936 C G DST Missense_Mutation p.W4525S 0.31 probably_damaging(1) TCGA-SX-A71V-01 6 87967887 87967887 A G ZNF292 Missense_Mutation p.T1514A 0.34 tolerated_low_confidence(0.13) benign(0.001) TCGA-SX-A71V-01 6 90575693 90575693 C G CASP8AP2 RNA 0.29 TCGA-SX-A71V-01 7 138774453 138774453 G A ZC3HAV1 Silent p.L121L 0.51 TCGA-SX-A71V-01 7 138943310 138943310 G T UBN2 Missense_Mutation p.R247L 0.50 deleterious(0) probably_damaging(0.992) TCGA-SX-A71V-01 7 150171317 150171317 C T GIMAP8 Silent p.I300I 0.25 TCGA-SX-A71V-01 7 27194784 27194784 T C HOXA7 Missense_Mutation p.E146G 0.32 deleterious(0) probably_damaging(0.998) TCGA-SX-A71V-01 7 34884587 34884587 C T NPSR1 Silent p.I279I 0.28 TCGA-SX-A71V-01 7 5983002 5983002 G A RSPH10B Missense_Mutation p.P571S 0.13 deleterious(0.02) probably_damaging(1) TCGA-SX-A71V-01 7 72413197 72413197 G T POM121 Missense_Mutation p.A624S 0.19 tolerated(0.23) possibly_damaging(0.758) TCGA-SX-A71V-01 7 82545774 82545774 C T PCLO Missense_Mutation p.R3843K 0.18 unknown(0) TCGA-SX-A71V-01 8 107719085 107719085 A G OXR1 Missense_Mutation p.N447D 0.42 tolerated(0.57) benign(0.001) TCGA-SX-A71V-01 8 124195568 124195568 A C FAM83A Missense_Mutation p.T158P 0.29 deleterious(0.01) probably_damaging(0.933) TCGA-SX-A71V-01 8 124195569 124195569 C T FAM83A Missense_Mutation p.T158I 0.29 deleterious(0) probably_damaging(0.911) TCGA-SX-A71V-01 8 141554392 141554393 AC - AGO2 Frame_Shift_Del p.F587Pfs*86 0.31 TCGA-SX-A71V-01 8 41476269 41476269 C A AGPAT6 Silent p.R374R 0.37 TCGA-SX-A71V-01 9 100057922 100057922 T C CCDC180 Intron 0.35 TCGA-SX-A71V-01 9 131477477 131477477 G A PKN3 Missense_Mutation p.R560H 0.36 tolerated(0.16) benign(0.037) TCGA-SX-A71V-01 9 137325968 137325968 C T RXRA Missense_Mutation p.P386S 0.38 tolerated(0.35) benign(0.082) TCGA-SX-A71V-01 9 14776028 14776028 G A FREM1 Missense_Mutation p.A1539V 0.09 tolerated(0.31) benign(0.009) TCGA-SX-A71V-01 9 35661878 35661878 T C ARHGEF39 3'UTR 0.22 TCGA-SX-A71V-01 X 88008417 88008417 T A CPXCR1 Translation_Start_Site p.M1? 0.69 deleterious(0) benign(0.402) TCGA-SX-A71W-01 10 124013783 124013783 T C TACC2 3'UTR 0.60 TCGA-SX-A71W-01 10 71160778 71160778 G A HK1 Missense_Mutation p.E885K 0.35 tolerated(0.25) benign(0.003) TCGA-SX-A71W-01 11 404095 404095 G A PKP3 Missense_Mutation p.G744R 0.43 deleterious(0) probably_damaging(1) TCGA-SX-A71W-01 12 15070166 15070166 C T ERP27 Silent p.E174E 0.53 TCGA-SX-A71W-01 12 40740663 40740663 T C LRRK2 Missense_Mutation p.I2073T 0.25 deleterious(0.03) probably_damaging(0.969) TCGA-SX-A71W-01 12 48736774 48736774 T C ZNF641 Silent p.R433R 0.70 TCGA-SX-A71W-01 12 58009666 58009666 G A ARHGEF25 Missense_Mutation p.R468H 0.33 tolerated(0.07) benign(0.217) TCGA-SX-A71W-01 12 66935595 66935595 C T GRIP1 Missense_Mutation p.R91K 0.62 deleterious(0.01) possibly_damaging(0.61) TCGA-SX-A71W-01 14 100118913 100118913 G - HHIPL1 Frame_Shift_Del p.D204Mfs*30 0.27 TCGA-SX-A71W-01 14 77494080 77494080 A T IRF2BPL Missense_Mutation p.L19Q 0.49 deleterious(0) probably_damaging(1) TCGA-SX-A71W-01 14 94060077 94060077 C - UNC79 Frame_Shift_Del p.P852Lfs*20 0.29 TCGA-SX-A71W-01 14 94125586 94125586 C - UNC79 Frame_Shift_Del p.P2031Lfs*20 0.26 TCGA-SX-A71W-01 15 41062597 41062597 G T C15orf62 5'UTR 0.46 TCGA-SX-A71W-01 15 72859480 72859480 G A ARIH1 Missense_Mutation p.D330N 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-SX-A71W-01 16 68729810 68729810 G A CDH3 Missense_Mutation p.G755D 0.10 deleterious(0) probably_damaging(0.998) TCGA-SX-A71W-01 17 41143717 41143717 T C RUNDC1 Missense_Mutation p.I609T 0.14 deleterious(0) probably_damaging(0.971) TCGA-SX-A71W-01 17 65362662 65362662 T C PSMD12 5'UTR 0.09 TCGA-SX-A71W-01 17 78085901 78085901 T G GAA Splice_Site p.X585_splice 0.69 TCGA-SX-A71W-01 18 33077699 33077699 G A INO80C Missense_Mutation p.A47V 0.32 deleterious_low_confidence(0) benign(0.086) TCGA-SX-A71W-01 18 72185851 72185851 G A CNDP2 Missense_Mutation p.A396T 0.37 deleterious(0) probably_damaging(0.926) TCGA-SX-A71W-01 19 46216656 46216656 T G FBXO46 Missense_Mutation p.K33T 0.38 tolerated(0.4) benign(0.07) TCGA-SX-A71W-01 19 46216657 46216657 T C FBXO46 Missense_Mutation p.K33E 0.40 tolerated(0.57) benign(0.025) TCGA-SX-A71W-01 19 46216658 46216658 G T FBXO46 Silent p.L32L 0.36 TCGA-SX-A71W-01 19 46387535 46387535 G C IRF2BP1 Missense_Mutation p.P500A 0.29 tolerated(0.09) possibly_damaging(0.811) TCGA-SX-A71W-01 19 7116971 7116971 G A INSR 3'UTR 0.30 TCGA-SX-A71W-01 1 59249596 59249596 A G JUN 5'UTR 0.16 TCGA-SX-A71W-01 20 3670817 3670817 G C SIGLEC1 Silent p.A1562A 0.21 TCGA-SX-A71W-01 21 37666022 37666022 T C DOPEY2 3'UTR 0.38 TCGA-SX-A71W-01 2 113286584 113286584 T G TTL 3'UTR 0.50 TCGA-SX-A71W-01 2 116497451 116497451 G A DPP10 Silent p.K282K 0.07 TCGA-SX-A71W-01 2 131487490 131487490 T C GPR148 Missense_Mutation p.Y256H 0.44 deleterious(0) possibly_damaging(0.832) TCGA-SX-A71W-01 2 201436485 201436485 A T SGOL2 Missense_Mutation p.K472N 0.52 deleterious(0.01) probably_damaging(0.913) TCGA-SX-A71W-01 2 234627924 234627924 C G UGT1A4 Missense_Mutation p.P153R 0.34 deleterious(0) probably_damaging(0.998) TCGA-SX-A71W-01 2 44139609 44139609 T C LRPPRC Silent p.S1079S 0.38 TCGA-SX-A71W-01 2 55805411 55805411 A T SMEK2 Missense_Mutation p.H512Q 0.46 tolerated_low_confidence(0.29) benign(0.004) TCGA-SX-A71W-01 3 15298489 15298489 C T SH3BP5 Missense_Mutation p.V341I 0.31 tolerated_low_confidence(0.13) benign(0.005) TCGA-SX-A71W-01 4 6865878 6865878 G T KIAA0232 Missense_Mutation p.D1257Y 0.36 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-SX-A71W-01 4 74277773 74277773 A G ALB Silent p.L258L 0.37 TCGA-SX-A71W-01 5 52235508 52235508 G A ITGA1 Missense_Mutation p.R1056Q 0.06 tolerated(0.36) benign(0.009) TCGA-SX-A71W-01 6 10529942 10529942 C G GCNT2 Nonsense_Mutation p.Y266* 0.28 TCGA-SX-A71W-01 6 151673787 151673787 C A AKAP12 Missense_Mutation p.L1421I 0.16 tolerated(0.38) possibly_damaging(0.704) TCGA-SX-A71W-01 6 29429533 29429533 A C OR2H1 5'UTR 0.25 TCGA-SX-A71W-01 6 30043621 30043621 G T RNF39 5'UTR 0.31 TCGA-SX-A71W-01 6 43646267 43646267 C T MRPS18A Silent p.K80K 0.37 TCGA-SX-A71W-01 6 57055217 57055217 G T RAB23 3'UTR 0.36 TCGA-SX-A71W-01 7 117232346 117232346 C A CFTR Silent p.R709R 0.24 TCGA-SX-A71W-01 8 7320361 7320361 C T SPAG11B Missense_Mutation p.V28M 0.14 deleterious(0) possibly_damaging(0.744) TCGA-SX-A71W-01 9 101806896 101806896 T C COL15A1 Missense_Mutation p.L874P 0.36 deleterious(0.03) possibly_damaging(0.601) TCGA-SX-A71W-01 9 33473864 33473864 G T NOL6 5'UTR 0.53 TCGA-SX-A71W-01 9 36246171 36246171 A G GNE Missense_Mutation p.V189A 0.38 tolerated(0.41) benign(0.003) TCGA-SX-A71W-01 9 37442187 37442187 G T ZBTB5 Missense_Mutation p.T121K 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-SX-A71W-01 X 119602796 119602796 C A LAMP2 Intron 1.00 TCGA-SX-A71W-01 X 53565885 53565885 G A HUWE1 Missense_Mutation p.S3930F 0.88 unknown(0) TCGA-SX-A71W-01 X 8763195 8763195 C T FAM9A Missense_Mutation p.G252E 0.14 tolerated_low_confidence(1) unknown(0) TCGA-SX-A7SL-01 10 120790937 120790937 A T NANOS1 3'UTR 0.50 TCGA-SX-A7SL-01 10 127371554 127371554 G T TEX36 Missense_Mutation p.T2N 0.40 deleterious(0.05) benign(0.128) TCGA-SX-A7SL-01 10 13803654 13803654 A T FRMD4A Missense_Mutation p.F153I 0.44 deleterious(0) possibly_damaging(0.463) TCGA-SX-A7SL-01 10 55566381 55566381 C T PCDH15 Missense_Mutation p.M1668I 0.52 deleterious_low_confidence(0) benign(0.028) TCGA-SX-A7SL-01 10 70748678 70748678 G C KIAA1279 Missense_Mutation p.K30N 0.43 tolerated(1) benign(0.001) TCGA-SX-A7SL-01 11 1017576 1017576 G A MUC6 Missense_Mutation p.T1742M 0.19 unknown(0) TCGA-SX-A7SL-01 11 104819264 104819264 C T CASP4 Silent p.T307T 0.37 TCGA-SX-A7SL-01 11 10875463 10875463 C A ZBED5 Missense_Mutation p.D344Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-SX-A7SL-01 11 111179041 111179041 A G COLCA2 Missense_Mutation p.D115G 0.49 deleterious(0) possibly_damaging(0.713) TCGA-SX-A7SL-01 11 134023240 134023240 G A NCAPD3 Missense_Mutation p.T1424M 0.43 deleterious(0) probably_damaging(0.981) TCGA-SX-A7SL-01 11 20409185 20409185 T A PRMT3 5'UTR 0.33 TCGA-SX-A7SL-01 11 49974862 49974862 T C OR4C13 Silent p.I296I 0.46 TCGA-SX-A7SL-01 12 10251473 10251480 CCCCATCA - CLEC1A Frame_Shift_Del p.D14Efs*103 0.27 TCGA-SX-A7SL-01 12 108913231 108913231 G C FICD Missense_Mutation p.E452D 0.32 tolerated_low_confidence(0.08) benign(0.002) TCGA-SX-A7SL-01 12 110905985 110905985 G A GPN3 Intron 0.55 TCGA-SX-A7SL-01 12 26636808 26636808 G T ITPR2 Missense_Mutation p.N1945K 0.43 deleterious(0.01) possibly_damaging(0.461) TCGA-SX-A7SL-01 12 50232203 50232203 A T BCDIN3D Missense_Mutation p.L277Q 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.902) TCGA-SX-A7SL-01 12 56619250 56619250 T C NABP2 Missense_Mutation p.V58A 0.48 tolerated(0.25) possibly_damaging(0.645) TCGA-SX-A7SL-01 12 57619136 57619140 CTACG - NXPH4 Frame_Shift_Del p.T179Rfs*58 0.52 TCGA-SX-A7SL-01 12 57963875 57963875 G A KIF5A Missense_Mutation p.R408H 0.45 tolerated(0.32) benign(0.003) TCGA-SX-A7SL-01 13 115091586 115091586 G A CHAMP1 Missense_Mutation p.V757I 0.46 deleterious(0.01) probably_damaging(0.99) TCGA-SX-A7SL-01 13 75884199 75884199 C T TBC1D4 Silent p.E824E 0.47 TCGA-SX-A7SL-01 14 32559858 32559858 A G ARHGAP5 5'UTR 0.43 TCGA-SX-A7SL-01 14 35873087 35873087 G A NFKBIA Intron 0.39 TCGA-SX-A7SL-01 14 74946814 74946814 C A NPC2 3'UTR 0.40 TCGA-SX-A7SL-01 14 88940021 88940021 C T PTPN21 Silent p.T879T 0.46 TCGA-SX-A7SL-01 14 90755068 90755068 T C NRDE2 Missense_Mutation p.D884G 0.54 tolerated(0.06) benign(0.009) TCGA-SX-A7SL-01 15 52357196 52357196 A T MAPK6 Nonstop_Mutation p.*722Lext*24 0.37 TCGA-SX-A7SL-01 15 75118999 75118999 C T CPLX3 5'UTR 0.44 TCGA-SX-A7SL-01 15 89074206 89074214 ACCTGGAAG - DET1 In_Frame_Del p.F253_V255del 0.22 TCGA-SX-A7SL-01 16 135675 135675 C A MPG Missense_Mutation p.H266N 0.63 tolerated(0.84) benign(0.001) TCGA-SX-A7SL-01 16 1717963 1717963 G A CRAMP1L Missense_Mutation p.G1035S 0.54 tolerated(0.16) benign(0.062) TCGA-SX-A7SL-01 16 1735486 1735486 C - HN1L Frame_Shift_Del p.P31Qfs*54 0.38 TCGA-SX-A7SL-01 16 2988244 2988244 G A FLYWCH1 Missense_Mutation p.E612K 0.08 deleterious(0) probably_damaging(0.991) TCGA-SX-A7SL-01 16 53674983 53674984 - A RPGRIP1L Frame_Shift_Ins p.K974* 0.35 TCGA-SX-A7SL-01 16 70504895 70504895 G C FUK Missense_Mutation p.G364R 0.31 deleterious(0.05) benign(0.032) TCGA-SX-A7SL-01 17 1634164 1634164 C AT WDR81 Frame_Shift_Ins p.S1297Rfs*42 0.30 TCGA-SX-A7SL-01 17 2282478 2282480 CAT - SGSM2 In_Frame_Del p.I1018del 0.36 TCGA-SX-A7SL-01 17 27441098 27441098 C A MYO18A Silent p.A843A 0.22 TCGA-SX-A7SL-01 17 4087143 4087143 G A ANKFY1 Nonsense_Mutation p.R630* 0.26 TCGA-SX-A7SL-01 17 41365867 41365867 G T TMEM106A Missense_Mutation p.A78S 0.40 deleterious(0) probably_damaging(1) TCGA-SX-A7SL-01 17 48503622 48503622 C G ACSF2 5'UTR 0.08 TCGA-SX-A7SL-01 17 60038289 60038289 A T MED13 Missense_Mutation p.C1807S 0.58 deleterious(0) probably_damaging(0.977) TCGA-SX-A7SL-01 17 61909160 61909160 C T PSMC5 Missense_Mutation p.A386V 0.32 deleterious(0.02) benign(0.084) TCGA-SX-A7SL-01 17 6683151 6683151 C G FBXO39 5'UTR 0.38 TCGA-SX-A7SL-01 17 73887900 73887901 AG - TRIM65 Frame_Shift_Del p.W327Afs*9 0.39 TCGA-SX-A7SL-01 17 79082544 79082544 C A BAIAP2 Intron 0.30 TCGA-SX-A7SL-01 18 19283591 19283591 G - ABHD3 Frame_Shift_Del p.L94Cfs*67 0.24 TCGA-SX-A7SL-01 19 10218531 10218531 G C PPAN Splice_Site p.X114_splice 0.42 TCGA-SX-A7SL-01 19 11289351 11289351 G T KANK2 Missense_Mutation p.S432Y 0.09 deleterious(0.01) benign(0.328) TCGA-SX-A7SL-01 19 35435702 35435707 TTAAAG - ZNF30 In_Frame_Del p.K613_V614del 0.24 TCGA-SX-A7SL-01 19 36641914 36641914 G A COX7A1 Silent p.S70S 0.47 TCGA-SX-A7SL-01 19 41117762 41117762 C A LTBP4 Intron 0.57 TCGA-SX-A7SL-01 19 549794 549794 C - GZMM 3'UTR 0.25 TCGA-SX-A7SL-01 19 56109104 56109104 G T FIZ1 Missense_Mutation p.A43D 0.41 deleterious(0) unknown(0) TCGA-SX-A7SL-01 1 145522603 145522603 G A PEX11B Missense_Mutation p.R155Q 0.30 tolerated(0.35) benign(0.167) TCGA-SX-A7SL-01 1 152079763 152079763 C G TCHH 3'UTR 0.53 TCGA-SX-A7SL-01 1 173826925 173826925 T C DARS2 3'UTR 0.57 TCGA-SX-A7SL-01 1 1849559 1849559 A G TMEM52 Missense_Mutation p.L131P 0.48 deleterious(0.03) benign(0.103) TCGA-SX-A7SL-01 1 22903066 22903066 T C EPHA8 Silent p.S172S 0.52 TCGA-SX-A7SL-01 1 235904811 235904811 C T LYST Missense_Mutation p.A2757T 0.33 tolerated(0.28) benign(0) TCGA-SX-A7SL-01 1 248402822 248402822 C G OR2M4 Missense_Mutation p.L198V 0.06 tolerated(0.7) benign(0.044) TCGA-SX-A7SL-01 1 33150223 33150223 A C RBBP4 3'UTR 0.25 TCGA-SX-A7SL-01 1 54605763 54605763 T - CDCP2 Frame_Shift_Del p.Y261Tfs*50 0.30 TCGA-SX-A7SL-01 1 87599342 87599342 G A RP5-1052I5.2 Missense_Mutation p.G271D 0.05 tolerated_low_confidence(0.08) unknown(0) TCGA-SX-A7SL-01 20 16719517 16719517 T C SNRPB2 Silent p.N133N 0.62 TCGA-SX-A7SL-01 20 42341689 42341689 C T MYBL2 Silent p.D589D 0.03 TCGA-SX-A7SL-01 20 43995569 43995569 T A SYS1 Silent p.T95T 0.33 TCGA-SX-A7SL-01 20 44806794 44806794 C A CDH22 Missense_Mutation p.R569L 0.53 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SL-01 20 62843457 62843457 G A MYT1 Missense_Mutation p.G495S 0.76 probably_damaging(1) TCGA-SX-A7SL-01 21 32638851 32638851 G A TIAM1 Silent p.G146G 0.48 TCGA-SX-A7SL-01 21 33687358 33687358 A G URB1 Silent p.A2229A 0.46 TCGA-SX-A7SL-01 22 20109843 20109843 G A RANBP1 Missense_Mutation p.R70Q 0.14 deleterious(0) probably_damaging(0.969) TCGA-SX-A7SL-01 22 23922377 23922377 T C IGLL1 Translation_Start_Site p.M1? 0.92 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-SX-A7SL-01 22 30050649 30050649 G - NF2 Frame_Shift_Del p.G151Vfs*23 0.47 TCGA-SX-A7SL-01 22 40803843 40803843 G A SGSM3 Silent p.L525L 0.93 TCGA-SX-A7SL-01 2 1371369 1371369 T G SNTG2 3'UTR 0.39 TCGA-SX-A7SL-01 2 1687921 1687921 T C PXDN Missense_Mutation p.Y140C 0.50 deleterious(0) probably_damaging(0.979) TCGA-SX-A7SL-01 2 179720165 179720165 A T CCDC141 Nonsense_Mutation p.L990* 0.44 TCGA-SX-A7SL-01 2 192548516 192548516 C A NABP1 Missense_Mutation p.Q122K 0.35 tolerated(0.07) benign(0.141) TCGA-SX-A7SL-01 2 20113904 20113904 G - WDR35 Frame_Shift_Del p.L1097Sfs*14 0.28 TCGA-SX-A7SL-01 2 204267454 204267454 C G ABI2 Missense_Mutation p.P330A 0.07 tolerated(0.06) benign(0.015) TCGA-SX-A7SL-01 2 20483190 20483190 C T PUM2 Missense_Mutation p.G450D 0.09 tolerated(0.08) possibly_damaging(0.702) TCGA-SX-A7SL-01 2 240961695 240961695 C T NDUFA10 Silent p.G46G 0.03 TCGA-SX-A7SL-01 2 27604506 27604506 T - PPM1G Frame_Shift_Del p.N534Mfs*112 0.29 TCGA-SX-A7SL-01 2 29404714 29404714 C A CLIP4 Silent p.T691T 0.44 TCGA-SX-A7SL-01 2 32640306 32640306 G T BIRC6 Missense_Mutation p.M649I 0.54 benign(0.009) TCGA-SX-A7SL-01 2 75907421 75907421 C A GCFC2 Missense_Mutation p.W570C 0.46 deleterious(0) probably_damaging(1) TCGA-SX-A7SL-01 3 10400378 10400378 T C ATP2B2 Silent p.P711P 0.45 TCGA-SX-A7SL-01 3 120050190 120050190 G A LRRC58 Missense_Mutation p.P325S 0.50 deleterious(0) probably_damaging(0.947) TCGA-SX-A7SL-01 3 121435943 121435943 G T GOLGB1 Missense_Mutation p.T310N 0.41 benign(0.398) TCGA-SX-A7SL-01 3 122880182 122880182 T C PDIA5 Silent p.A453A 0.69 TCGA-SX-A7SL-01 3 145824360 145824360 G T PLOD2 Missense_Mutation p.Q192K 0.38 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SL-01 3 145824369 145824369 C T PLOD2 Missense_Mutation p.D189N 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-SX-A7SL-01 3 158362456 158362456 T G GFM1 Silent p.A11A 0.49 TCGA-SX-A7SL-01 3 53263113 53263113 A G TKT Silent p.A443A 0.29 TCGA-SX-A7SL-01 3 58494634 58494634 G T ACOX2 Missense_Mutation p.P657T 0.05 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SL-01 3 9730673 9730673 C - MTMR14 Frame_Shift_Del p.L448Wfs*112 0.29 TCGA-SX-A7SL-01 4 134072787 134072787 C G PCDH10 Missense_Mutation p.L498V 0.36 tolerated(0.26) benign(0.03) TCGA-SX-A7SL-01 4 140640884 140640884 G C MAML3 Missense_Mutation p.Q1004E 0.40 probably_damaging(0.983) TCGA-SX-A7SL-01 4 156784906 156784906 C T ASIC5 Missense_Mutation p.G14E 0.57 deleterious_low_confidence(0) possibly_damaging(0.845) TCGA-SX-A7SL-01 4 42457327 42457327 T A ATP8A1 Missense_Mutation p.D935V 0.48 tolerated(0.5) benign(0.203) TCGA-SX-A7SL-01 4 70512663 70512663 A T UGT2A1 Missense_Mutation p.Y234N 0.35 deleterious(0) probably_damaging(0.994) TCGA-SX-A7SL-01 4 89034520 89034520 G A ABCG2 Missense_Mutation p.L377F 0.42 tolerated(0.18) benign(0.12) TCGA-SX-A7SL-01 5 140537631 140537631 G T PCDHB17 3'UTR 0.29 TCGA-SX-A7SL-01 5 82373148 82373148 G A TMEM167A 5'UTR 0.46 TCGA-SX-A7SL-01 6 10877507 10877507 T C GCM2 Missense_Mutation p.N70S 0.10 deleterious(0) probably_damaging(0.996) TCGA-SX-A7SL-01 6 109699166 109699166 A T CD164 Missense_Mutation p.Y90N 0.69 deleterious(0.02) benign(0.378) TCGA-SX-A7SL-01 6 35803124 35803124 G A SRPK1 Missense_Mutation p.A642V 0.91 deleterious(0.01) possibly_damaging(0.906) TCGA-SX-A7SL-01 6 35803125 35803125 C T SRPK1 Missense_Mutation p.A642T 0.91 deleterious(0) probably_damaging(0.996) TCGA-SX-A7SL-01 6 43038134 43038134 A G KLC4 Missense_Mutation p.R326G 0.13 deleterious(0) probably_damaging(0.981) TCGA-SX-A7SL-01 6 51913390 51913390 C G PKHD1 Missense_Mutation p.E769D 0.78 tolerated(0.17) benign(0.002) TCGA-SX-A7SL-01 7 120979243 120979243 A G WNT16 Silent p.S314S 0.06 TCGA-SX-A7SL-01 7 48431545 48431545 C T ABCA13 Silent p.P3894P 0.10 TCGA-SX-A7SL-01 7 7612994 7612994 T - MIOS Frame_Shift_Del p.Y296* 0.25 TCGA-SX-A7SL-01 7 77649071 77649071 A T MAGI2 Missense_Mutation p.L1310H 0.59 tolerated(0.09) probably_damaging(0.984) TCGA-SX-A7SL-01 8 125551290 125551290 C G TATDN1 5'UTR 0.38 TCGA-SX-A7SL-01 8 145057194 145057194 T A PARP10 Missense_Mutation p.E821V 0.39 deleterious(0) benign(0.23) TCGA-SX-A7SL-01 8 6266814 6266814 G A MCPH1 Missense_Mutation p.V13I 0.40 deleterious(0) possibly_damaging(0.893) TCGA-SX-A7SL-01 8 87410646 87410646 T C WWP1 Missense_Mutation p.V137A 0.53 tolerated(0.12) benign(0.16) TCGA-SX-A7SL-01 9 129456044 129456044 G C LMX1B Missense_Mutation p.R280P 0.61 tolerated(0.05) probably_damaging(0.994) TCGA-SX-A7SL-01 9 138531166 138531166 C G GLT6D1 5'UTR 0.27 TCGA-SX-A7SL-01 9 139360854 139360854 A G SEC16A Silent p.D1330D 0.38 TCGA-SX-A7SL-01 9 140477471 140477471 C A ZMYND19 Missense_Mutation p.E168D 0.41 deleterious(0.02) probably_damaging(0.992) TCGA-SX-A7SL-01 9 90312114 90312114 C G DAPK1 Missense_Mutation p.P869R 0.46 deleterious(0.04) benign(0.023) TCGA-SX-A7SL-01 9 94794654 94794654 T A SPTLC1 3'UTR 0.57 TCGA-SX-A7SL-01 X 110385396 110385396 G A PAK3 Missense_Mutation p.G83E 0.93 deleterious(0) probably_damaging(0.978) TCGA-SX-A7SL-01 X 13734112 13734112 A C TRAPPC2 Intron 0.07 TCGA-SX-A7SL-01 X 53106377 53106377 A C GPR173 Missense_Mutation p.M192L 1.00 tolerated(0.52) benign(0.004) TCGA-SX-A7SL-01 X 74517571 74517571 T G UPRT Intron 0.89 TCGA-SX-A7SL-01 X 8699980 8699980 C G KAL1 Missense_Mutation p.R33P 0.82 tolerated(0.11) benign(0.387) TCGA-SX-A7SM-01 10 5443030 5443030 G T TUBAL3 Missense_Mutation p.H8Q 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.902) TCGA-SX-A7SM-01 10 6527117 6527117 T - PRKCQ Frame_Shift_Del p.R339Efs*26 0.09 TCGA-SX-A7SM-01 10 72324203 72324203 T G PALD1 Missense_Mutation p.I782M 0.40 deleterious(0) probably_damaging(0.934) TCGA-SX-A7SM-01 10 91479191 91479191 A T KIF20B Missense_Mutation p.T484S 0.40 tolerated(0.14) benign(0.058) TCGA-SX-A7SM-01 11 6500088 6500088 C A ARFIP2 Missense_Mutation p.K139N 0.44 deleterious(0) probably_damaging(1) TCGA-SX-A7SM-01 11 836827 836827 A G CD151 Missense_Mutation p.Y112C 0.41 deleterious(0.01) possibly_damaging(0.634) TCGA-SX-A7SM-01 11 89223801 89223801 T G NOX4 Intron 0.38 TCGA-SX-A7SM-01 11 93461858 93461858 T A KIAA1731 Silent p.T2391T 0.35 TCGA-SX-A7SM-01 12 109536367 109536367 G A UNG Missense_Mutation p.R88H 0.57 deleterious(0.03) possibly_damaging(0.628) TCGA-SX-A7SM-01 12 112622150 112622150 C G HECTD4 Silent p.L3394L 0.53 TCGA-SX-A7SM-01 12 124017929 124017929 A G RILPL1 Missense_Mutation p.V34A 0.58 deleterious(0) probably_damaging(0.932) TCGA-SX-A7SM-01 12 19408098 19408100 GAG - PLEKHA5 Splice_Site p.X144_splice 0.24 TCGA-SX-A7SM-01 12 46244757 46244758 CC - ARID2 Frame_Shift_Del p.P951Sfs*16 0.15 TCGA-SX-A7SM-01 12 49954148 49954148 G A MCRS1 Missense_Mutation p.P284S 0.05 tolerated(0.2) benign(0.023) TCGA-SX-A7SM-01 12 50025231 50025231 C G PRPF40B Silent p.P44P 0.27 TCGA-SX-A7SM-01 13 101760142 101760142 T C NALCN Splice_Site p.X789_splice 0.43 TCGA-SX-A7SM-01 13 112725540 112725540 A G SOX1 3'UTR 0.38 TCGA-SX-A7SM-01 13 46054390 46054390 C G COG3 Missense_Mutation p.L172V 0.30 deleterious(0) probably_damaging(1) TCGA-SX-A7SM-01 14 103566523 103566523 A C EXOC3L4 5'UTR 0.42 TCGA-SX-A7SM-01 14 106091254 106091254 T G IGHG4 Missense_Mutation p.K214Q 0.44 deleterious(0) benign(0.034) TCGA-SX-A7SM-01 14 51273464 51273464 G C NIN Missense_Mutation p.Q86E 0.38 tolerated(0.14) benign(0.006) TCGA-SX-A7SM-01 14 62207303 62207303 T G HIF1A Silent p.L563L 0.36 TCGA-SX-A7SM-01 15 40846226 40846226 G A C15orf57 Missense_Mutation p.P177S 0.44 tolerated_low_confidence(0.39) benign(0.01) TCGA-SX-A7SM-01 15 63073341 63073341 G - TLN2 Frame_Shift_Del p.D1840Mfs*28 0.28 TCGA-SX-A7SM-01 15 64710865 64710867 TGG - TRIP4 In_Frame_Del p.G434del 0.37 TCGA-SX-A7SM-01 15 66791910 66791910 G T RPL4 Silent p.G373G 0.37 TCGA-SX-A7SM-01 15 72636412 72636412 T C HEXA 3'UTR 0.12 TCGA-SX-A7SM-01 15 78566592 78566592 G T DNAJA4 Missense_Mutation p.G187W 0.38 deleterious(0) probably_damaging(1) TCGA-SX-A7SM-01 16 30593850 30593850 G T ZNF785 3'UTR 0.50 TCGA-SX-A7SM-01 16 46771758 46771758 G A MYLK3 Missense_Mutation p.S289L 0.26 tolerated(0.13) benign(0.006) TCGA-SX-A7SM-01 16 58608632 58608633 - A CNOT1 Frame_Shift_Ins p.L620Ffs*60 0.21 TCGA-SX-A7SM-01 16 67337132 67337132 C A KCTD19 Missense_Mutation p.S187I 0.40 tolerated(0.1) benign(0.021) TCGA-SX-A7SM-01 16 68265766 68265766 T C ESRP2 Missense_Mutation p.K413R 0.41 tolerated(0.58) benign(0.094) TCGA-SX-A7SM-01 17 7491605 7491605 A - SOX15 3'UTR 0.24 TCGA-SX-A7SM-01 17 7506290 7506290 G T FXR2 Missense_Mutation p.F160L 0.33 tolerated(0.09) benign(0.016) TCGA-SX-A7SM-01 17 7606315 7606315 G - WRAP53 Frame_Shift_Del p.Q426Sfs*3 0.16 TCGA-SX-A7SM-01 17 80858535 80858535 T A TBCD Missense_Mutation p.I553N 0.42 deleterious(0) probably_damaging(0.954) TCGA-SX-A7SM-01 19 12460640 12460640 G A ZNF442 Missense_Mutation p.L587F 0.37 tolerated(0.58) probably_damaging(0.937) TCGA-SX-A7SM-01 19 15342598 15342598 G A EPHX3 Silent p.F106F 0.45 TCGA-SX-A7SM-01 19 327981 327981 G T MIER2 Missense_Mutation p.D84E 0.21 tolerated(0.51) benign(0.047) TCGA-SX-A7SM-01 19 35622165 35622165 G T LGI4 Intron 0.33 TCGA-SX-A7SM-01 19 35622166 35622166 T G LGI4 Intron 0.33 TCGA-SX-A7SM-01 19 37619309 37619309 G T ZNF420 Missense_Mutation p.E472D 0.19 deleterious(0.03) benign(0.093) TCGA-SX-A7SM-01 19 37619310 37619310 A C ZNF420 Missense_Mutation p.K473Q 0.18 deleterious(0) benign(0.122) TCGA-SX-A7SM-01 19 42461049 42461049 G C RABAC1 Missense_Mutation p.F169L 0.40 tolerated(0.24) benign(0.019) TCGA-SX-A7SM-01 19 48305603 48305603 G A TPRX1 Missense_Mutation p.P222L 0.50 tolerated(0.17) unknown(0) TCGA-SX-A7SM-01 19 48972891 48972891 T C CYTH2 Intron 0.46 TCGA-SX-A7SM-01 1 119925589 119925589 A G HAO2 Silent p.R61R 0.08 TCGA-SX-A7SM-01 1 153320386 153320386 A - PGLYRP4 Frame_Shift_Del p.F8Sfs*65 0.28 TCGA-SX-A7SM-01 1 15789342 15789342 C A CELA2A Missense_Mutation p.N114K 0.31 tolerated(0.32) benign(0.132) TCGA-SX-A7SM-01 1 228558813 228558813 A G OBSCN Silent p.V7735V 0.35 TCGA-SX-A7SM-01 1 240408807 240408807 C T FMN2 Intron 0.32 TCGA-SX-A7SM-01 1 26109142 26109142 C G MAN1C1 Missense_Mutation p.P573A 0.44 deleterious(0.04) benign(0.329) TCGA-SX-A7SM-01 1 26664849 26664850 AT G AIM1L Frame_Shift_Del p.M281Rfs*31 0.20 TCGA-SX-A7SM-01 1 28157385 28157385 G C PPP1R8 Silent p.L13L 0.29 TCGA-SX-A7SM-01 1 33583829 33583829 T A ADC Intron 0.38 TCGA-SX-A7SM-01 1 38039944 38039951 CTGGGGGG - GNL2 Frame_Shift_Del p.P471Sfs*27 0.35 TCGA-SX-A7SM-01 1 45340302 45340302 G A EIF2B3 Intron 0.37 TCGA-SX-A7SM-01 1 46685818 46685818 G A LURAP1 Missense_Mutation p.D216N 0.38 tolerated(0.46) possibly_damaging(0.642) TCGA-SX-A7SM-01 1 85116084 85116084 G A SSX2IP Missense_Mutation p.S544L 0.05 tolerated(0.08) benign(0.002) TCGA-SX-A7SM-01 1 94341887 94341887 T A DNTTIP2 Missense_Mutation p.H535L 0.28 tolerated(0.28) benign(0.004) TCGA-SX-A7SM-01 20 17602147 17602148 GT - RRBP1 Frame_Shift_Del p.L691Afs*5 0.27 TCGA-SX-A7SM-01 20 44670004 44670004 T C SLC12A5 Silent p.H320H 0.22 TCGA-SX-A7SM-01 20 62560863 62560863 C T DNAJC5 Silent p.S102S 0.37 TCGA-SX-A7SM-01 20 62680619 62680619 C T SOX18 Missense_Mutation p.R84H 0.52 deleterious(0) possibly_damaging(0.522) TCGA-SX-A7SM-01 21 47665020 47665020 A C MCM3AP Missense_Mutation p.I1580S 0.36 deleterious(0) benign(0.042) TCGA-SX-A7SM-01 22 33679284 33679284 A G LARGE Missense_Mutation p.V594A 0.50 deleterious(0) possibly_damaging(0.741) TCGA-SX-A7SM-01 2 113145976 113145976 C A RGPD8 Missense_Mutation p.A1516S 0.09 tolerated(0.44) benign(0.001) TCGA-SX-A7SM-01 2 128610641 128610642 - A POLR2D Frame_Shift_Ins p.H38Sfs*12 0.28 TCGA-SX-A7SM-01 2 135744888 135744888 G A MAP3K19 Silent p.V518V 0.37 TCGA-SX-A7SM-01 2 179517048 179517048 G C TTN Missense_Mutation p.P13052A 0.34 TCGA-SX-A7SM-01 2 179615537 179615537 C A TTN Intron 0.35 TCGA-SX-A7SM-01 2 191874648 191874649 TG - STAT1 Frame_Shift_Del p.M28Gfs*21 0.27 TCGA-SX-A7SM-01 2 198570455 198570455 C T MARS2 Missense_Mutation p.A109V 0.11 tolerated(0.25) benign(0.102) TCGA-SX-A7SM-01 2 241463492 241463492 C A ANKMY1 Missense_Mutation p.G459C 0.30 tolerated(0.3) benign(0.001) TCGA-SX-A7SM-01 2 37255868 37255868 G C HEATR5B Missense_Mutation p.S1186C 0.34 deleterious(0.01) benign(0.118) TCGA-SX-A7SM-01 3 47165283 47165286 TTTT - SETD2 Frame_Shift_Del p.E282Ifs*18 0.66 TCGA-SX-A7SM-01 4 122085296 122085296 T A TNIP3 Silent p.P72P 0.40 TCGA-SX-A7SM-01 4 159812799 159812800 - T FNIP2 Splice_Site p.X1050_splice 0.24 TCGA-SX-A7SM-01 4 2337512 2337512 G C ZFYVE28 Missense_Mutation p.D207E 0.37 tolerated(0.21) benign(0.009) TCGA-SX-A7SM-01 4 2946954 2946954 G A NOP14 Silent p.L546L 0.45 TCGA-SX-A7SM-01 5 114860849 114860849 G C FEM1C Missense_Mutation p.T337S 0.36 deleterious(0) benign(0.186) TCGA-SX-A7SM-01 5 125807996 125807996 A G GRAMD3 Missense_Mutation p.S143G 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-SX-A7SM-01 5 140710446 140710446 C G PCDHGA1 Silent p.R65R 0.34 TCGA-SX-A7SM-01 5 140764669 140764669 G T PCDHGA7 Missense_Mutation p.V735L 0.06 tolerated_low_confidence(0.22) benign(0.01) TCGA-SX-A7SM-01 5 178032332 178032332 T C CLK4 Missense_Mutation p.I396V 0.27 tolerated(0.09) benign(0.076) TCGA-SX-A7SM-01 5 179743447 179743447 C A GFPT2 Missense_Mutation p.L389F 0.49 tolerated(1) benign(0.115) TCGA-SX-A7SM-01 5 78375253 78375253 T A BHMT2 Missense_Mutation p.F76L 0.28 deleterious(0) possibly_damaging(0.723) TCGA-SX-A7SM-01 6 139694035 139694035 A T CITED2 3'UTR 0.23 TCGA-SX-A7SM-01 6 145161916 145161916 G A UTRN Silent p.T3406T 0.44 TCGA-SX-A7SM-01 6 29639313 29639313 G A MOG 3'UTR 0.42 TCGA-SX-A7SM-01 6 31474984 31474984 T - MICB Frame_Shift_Del p.W267Gfs*78 0.15 TCGA-SX-A7SM-01 7 100674406 100674408 AGT TG MUC17 Frame_Shift_Del p.S30Wfs*2 0.29 TCGA-SX-A7SM-01 7 1525113 1525113 A G INTS1 Intron 0.58 TCGA-SX-A7SM-01 7 42187973 42187973 C T GLI3 Silent p.E73E 0.41 TCGA-SX-A7SM-01 7 87530188 87530188 G A DBF4 Missense_Mutation p.E307K 0.46 tolerated(0.42) benign(0.084) TCGA-SX-A7SM-01 8 133851799 133851799 G - PHF20L1 Frame_Shift_Del p.L788Yfs*3 0.27 TCGA-SX-A7SM-01 8 17142073 17142073 A G VPS37A Missense_Mutation p.E354G 0.34 deleterious(0.03) probably_damaging(0.98) TCGA-SX-A7SM-01 8 28980929 28980929 T G KIF13B Missense_Mutation p.M1145L 0.24 tolerated(1) benign(0.003) TCGA-SX-A7SM-01 9 111819564 111819564 C T TMEM245 Silent p.L587L 0.43 TCGA-SX-A7SM-01 9 132638511 132638511 C T USP20 Silent p.F801F 0.40 TCGA-SX-A7SM-01 9 139937597 139937597 C T NPDC1 Intron 0.33 TCGA-SX-A7SM-01 9 141015293 141015293 C T CACNA1B Missense_Mutation p.T2150M 0.41 tolerated(0.09) probably_damaging(0.945) TCGA-SX-A7SM-01 9 34661563 34661567 CAGGA - IL11RA 3'UTR 0.29 TCGA-SX-A7SM-01 9 75420393 75420393 T A TMC1 Missense_Mutation p.N554K 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-SX-A7SM-01 9 79955390 79955390 T - VPS13A Frame_Shift_Del p.N2319Tfs*64 0.26 TCGA-SX-A7SM-01 9 92002434 92002434 C A SEMA4D Missense_Mutation p.L399F 0.40 deleterious(0) probably_damaging(0.998) TCGA-SX-A7SM-01 X 100402791 100402791 G T CENPI Missense_Mutation p.L622F 0.66 tolerated(0.16) benign(0.007) TCGA-SX-A7SM-01 X 129306144 129306144 C T RAB33A Silent p.I36I 0.84 TCGA-SX-A7SM-01 X 49851346 49851347 - TAA CLCN5 In_Frame_Ins p.N460dup 0.68 TCGA-SX-A7SN-01 10 104404319 104404319 A G TRIM8 5'UTR 0.31 TCGA-SX-A7SN-01 10 116062118 116062118 A T AFAP1L2 Missense_Mutation p.S470R 0.07 deleterious(0.01) benign(0.347) TCGA-SX-A7SN-01 10 127515167 127515167 A T BCCIP Missense_Mutation p.N58I 0.19 tolerated(0.06) probably_damaging(0.955) TCGA-SX-A7SN-01 10 375429 375429 A G DIP2C Missense_Mutation p.Y1233H 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-SX-A7SN-01 10 5683908 5683908 C T ASB13 Silent p.A178A 0.32 TCGA-SX-A7SN-01 10 59986850 59986850 A G IPMK Silent p.Y109Y 0.28 TCGA-SX-A7SN-01 10 70547942 70547942 C T CCAR1 Missense_Mutation p.S1015L 0.41 tolerated(0.32) unknown(0) TCGA-SX-A7SN-01 10 75529171 75529171 T G SEC24C Missense_Mutation p.C831G 0.46 deleterious(0) probably_damaging(1) TCGA-SX-A7SN-01 11 20065595 20065595 A G NAV2 Silent p.S1015S 0.36 TCGA-SX-A7SN-01 11 26720062 26720062 A G SLC5A12 Missense_Mutation p.L281P 0.42 deleterious(0) probably_damaging(0.938) TCGA-SX-A7SN-01 11 71808801 71808803 GGG - LAMTOR1 3'UTR 0.43 TCGA-SX-A7SN-01 11 86048421 86048421 G C C11orf73 Missense_Mutation p.G90A 0.35 tolerated(0.28) benign(0.212) TCGA-SX-A7SN-01 12 107371849 107371849 T A MTERFD3 Missense_Mutation p.Q215L 0.36 deleterious(0) probably_damaging(0.956) TCGA-SX-A7SN-01 12 112220989 112220989 G A RP11-162P23.2 Missense_Mutation p.A80T 0.38 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SN-01 12 112220990 112220990 C A RP11-162P23.2 Missense_Mutation p.A80D 0.38 deleterious(0) probably_damaging(1) TCGA-SX-A7SN-01 12 121441960 121441960 T C C12orf43 Missense_Mutation p.N262S 0.32 deleterious(0.03) possibly_damaging(0.453) TCGA-SX-A7SN-01 12 123089162 123089162 G A KNTC1 Nonsense_Mutation p.W1718* 0.29 TCGA-SX-A7SN-01 12 123089163 123089163 G T KNTC1 Missense_Mutation p.W1718C 0.29 deleterious(0) probably_damaging(0.998) TCGA-SX-A7SN-01 12 123285813 123285813 G A CCDC62 Missense_Mutation p.D374N 0.38 deleterious(0.04) possibly_damaging(0.808) TCGA-SX-A7SN-01 12 14822676 14822676 G - GUCY2C Frame_Shift_Del p.P421Lfs*12 0.23 TCGA-SX-A7SN-01 12 26810815 26810815 T C ITPR2 Missense_Mutation p.M673V 0.37 tolerated(1) benign(0.016) TCGA-SX-A7SN-01 12 26810821 26810821 C T ITPR2 Missense_Mutation p.V671I 0.37 tolerated(0.58) benign(0.007) TCGA-SX-A7SN-01 12 49445630 49445630 A G KMT2D Silent p.P612P 0.29 TCGA-SX-A7SN-01 12 88374090 88374090 C G C12orf50 3'UTR 0.27 TCGA-SX-A7SN-01 12 91445296 91445296 C T KERA Splice_Site p.X296_splice 0.46 TCGA-SX-A7SN-01 13 111213813 111213813 C G RAB20 Missense_Mutation p.K18N 0.21 deleterious(0) probably_damaging(0.988) TCGA-SX-A7SN-01 13 61986120 61986120 C T PCDH20 Silent p.Q704Q 0.28 TCGA-SX-A7SN-01 14 23586764 23586764 G A CEBPE Missense_Mutation p.L260F 0.41 deleterious(0) probably_damaging(0.986) TCGA-SX-A7SN-01 14 24768327 24768327 G C DHRS1 5'UTR 0.38 TCGA-SX-A7SN-01 14 24911432 24911432 T C SDR39U1 Missense_Mutation p.D53G 0.48 tolerated(0.15) benign(0.444) TCGA-SX-A7SN-01 14 95089993 95089993 G A SERPINA3 Missense_Mutation p.A372T 0.26 deleterious(0.02) probably_damaging(0.959) TCGA-SX-A7SN-01 14 95942145 95942145 G A SYNE3 Missense_Mutation p.P5L 0.37 tolerated(0.59) benign(0.023) TCGA-SX-A7SN-01 14 99879302 99879302 G C SETD3 Missense_Mutation p.H279D 0.52 deleterious(0) probably_damaging(0.977) TCGA-SX-A7SN-01 15 43724502 43724502 T C TP53BP1 Missense_Mutation p.T1189A 0.34 tolerated(0.08) benign(0.356) TCGA-SX-A7SN-01 15 60741577 60741577 A T NARG2 Missense_Mutation p.M530K 0.40 tolerated(0.12) benign(0.021) TCGA-SX-A7SN-01 15 60803577 60803577 A G RORA Missense_Mutation p.L256P 0.35 tolerated(0.11) benign(0.021) TCGA-SX-A7SN-01 15 86122646 86122646 C T AKAP13 Silent p.D449D 0.39 TCGA-SX-A7SN-01 16 4557964 4557964 A G HMOX2 Missense_Mutation p.H152R 0.44 deleterious(0) probably_damaging(0.995) TCGA-SX-A7SN-01 16 55846940 55846940 C T CES1 Missense_Mutation p.G321S 0.61 tolerated(0.23) benign(0.007) TCGA-SX-A7SN-01 16 67226690 67226690 G A E2F4 Silent p.Q54Q 0.51 TCGA-SX-A7SN-01 16 70316587 70316587 T C AARS Missense_Mutation p.H27R 0.61 tolerated(0.84) probably_damaging(0.999) TCGA-SX-A7SN-01 16 85144008 85144008 G C FAM92B Missense_Mutation p.Q27E 0.26 tolerated(0.65) benign(0.062) TCGA-SX-A7SN-01 16 8738460 8738460 G T METTL22 Missense_Mutation p.D353Y 0.24 deleterious(0) probably_damaging(0.976) TCGA-SX-A7SN-01 17 16675932 16675932 T C CCDC144A Missense_Mutation p.L1387P 0.30 tolerated_low_confidence(0.19) benign(0.114) TCGA-SX-A7SN-01 17 18220521 18220521 A - SMCR8 Frame_Shift_Del p.V474Ffs*24 0.20 TCGA-SX-A7SN-01 17 18220533 18220533 C T SMCR8 Missense_Mutation p.T477M 0.29 deleterious(0.01) benign(0.117) TCGA-SX-A7SN-01 17 21321800 21321800 C G KCNJ12 3'UTR 0.52 TCGA-SX-A7SN-01 17 25919618 25919618 A G KSR1 Missense_Mutation p.H285R 0.38 tolerated(0.05) benign(0.206) TCGA-SX-A7SN-01 17 38249443 38249443 A G THRA Silent p.Q427Q 0.70 TCGA-SX-A7SN-01 17 7481547 7481547 A G EIF4A1 Missense_Mutation p.E354G 0.55 deleterious(0) probably_damaging(0.946) TCGA-SX-A7SN-01 17 79166382 79166382 T C AZI1 Missense_Mutation p.E814G 0.29 deleterious(0.02) possibly_damaging(0.901) TCGA-SX-A7SN-01 17 79503756 79503756 A G FSCN2 Missense_Mutation p.N429S 0.41 deleterious(0.05) possibly_damaging(0.531) TCGA-SX-A7SN-01 17 79870395 79870395 G A SIRT7 Missense_Mutation p.A367V 0.49 tolerated(0.32) benign(0.007) TCGA-SX-A7SN-01 17 8387579 8387579 C T MYH10 Silent p.Q1684Q 0.52 TCGA-SX-A7SN-01 17 8784972 8784972 G T PIK3R5 Missense_Mutation p.S786Y 0.53 deleterious(0.02) possibly_damaging(0.776) TCGA-SX-A7SN-01 17 8794161 8794161 G A PIK3R5 Missense_Mutation p.T184M 0.49 tolerated(0.08) possibly_damaging(0.631) TCGA-SX-A7SN-01 18 3457644 3457644 T C TGIF1 Silent p.H304H 0.30 TCGA-SX-A7SN-01 19 22951104 22951104 T A ZNF99 Intron 0.35 TCGA-SX-A7SN-01 19 22951105 22951105 A C ZNF99 Splice_Site p.X76_splice 0.35 TCGA-SX-A7SN-01 19 2477521 2477521 G C GADD45B Missense_Mutation p.L135F 0.48 deleterious(0.01) possibly_damaging(0.857) TCGA-SX-A7SN-01 19 44341266 44341266 A T ZNF283 Missense_Mutation p.D91V 0.35 deleterious(0.03) possibly_damaging(0.697) TCGA-SX-A7SN-01 19 46355636 46355636 A G SYMPK Missense_Mutation p.I78T 0.36 deleterious(0.05) probably_damaging(0.958) TCGA-SX-A7SN-01 19 52394350 52394350 C A ZNF649 Nonsense_Mutation p.G347* 0.39 TCGA-SX-A7SN-01 19 55593489 55593489 C - EPS8L1 Frame_Shift_Del p.S312Rfs*44 0.26 TCGA-SX-A7SN-01 19 932716 932716 T C ARID3A Missense_Mutation p.W223R 0.15 deleterious(0) probably_damaging(0.996) TCGA-SX-A7SN-01 1 1140950 1140950 G A TNFRSF18 Intron 0.35 TCGA-SX-A7SN-01 1 1140962 1140962 G A TNFRSF18 Intron 0.38 TCGA-SX-A7SN-01 1 114184618 114184618 C T MAGI3 Silent p.V482V 0.36 TCGA-SX-A7SN-01 1 118509280 118509281 - A SPAG17 Frame_Shift_Ins p.I2162Yfs*8 0.26 TCGA-SX-A7SN-01 1 144821989 144821989 C G NBPF9 Nonsense_Mutation p.S310* 0.39 TCGA-SX-A7SN-01 1 145525111 145525111 C A ITGA10 Missense_Mutation p.L16M 0.22 tolerated(0.1) possibly_damaging(0.701) TCGA-SX-A7SN-01 1 151611491 151611491 G C SNX27 Missense_Mutation p.D147H 0.35 deleterious(0) possibly_damaging(0.907) TCGA-SX-A7SN-01 1 154520167 154520167 A T TDRD10 3'UTR 0.38 TCGA-SX-A7SN-01 1 210010373 210010380 CTACCCGG - DIEXF Frame_Shift_Del p.F293Lfs*35 0.43 TCGA-SX-A7SN-01 1 211751453 211751453 T C SLC30A1 Missense_Mutation p.T168A 0.44 tolerated(0.73) benign(0.009) TCGA-SX-A7SN-01 1 212960912 212960912 T C NSL1 Missense_Mutation p.N101S 0.33 tolerated(0.57) benign(0.012) TCGA-SX-A7SN-01 1 248570141 248570141 G C OR2T1 Missense_Mutation p.E282D 0.32 deleterious(0.03) probably_damaging(0.927) TCGA-SX-A7SN-01 1 43637311 43637311 C T EBNA1BP2 Silent p.K109K 0.36 TCGA-SX-A7SN-01 1 52277743 52277743 T C NRD1 Missense_Mutation p.M636V 0.35 tolerated(0.27) benign(0.001) TCGA-SX-A7SN-01 1 75072484 75072484 T - C1orf173 Frame_Shift_Del p.V431* 0.26 TCGA-SX-A7SN-01 1 90399387 90399390 ATCA CTT LRRC8D Frame_Shift_Del p.I254Lfs*14 0.40 TCGA-SX-A7SN-01 1 97278858 97278858 T C PTBP2 Missense_Mutation p.M498T 0.31 deleterious(0) probably_damaging(0.986) TCGA-SX-A7SN-01 20 1373647 1373647 G C FKBP1A 5'UTR 0.46 TCGA-SX-A7SN-01 20 13830181 13830181 C T SEL1L2 Missense_Mutation p.G560S 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.789) TCGA-SX-A7SN-01 20 56098332 56098332 G A CTCFL Silent p.L182L 0.42 TCGA-SX-A7SN-01 22 20795992 20795992 A T KLHL22 3'UTR 0.50 TCGA-SX-A7SN-01 22 20795993 20795993 G A KLHL22 3'UTR 0.50 TCGA-SX-A7SN-01 22 22049867 22049867 C A PPIL2 Intron 0.32 TCGA-SX-A7SN-01 2 10140748 10140748 T C GRHL1 Silent p.I590I 0.40 TCGA-SX-A7SN-01 2 103120119 103120119 T - SLC9A4 Frame_Shift_Del p.L312Cfs*4 0.25 TCGA-SX-A7SN-01 2 133174544 133174544 T A GPR39 5'UTR 0.29 TCGA-SX-A7SN-01 2 15415752 15415752 A T NBAS Silent p.P1860P 0.46 TCGA-SX-A7SN-01 2 173349951 173349951 C T ITGA6 Missense_Mutation p.P605S 0.42 deleterious(0) probably_damaging(1) TCGA-SX-A7SN-01 2 17881504 17881504 G A SMC6 Nonsense_Mutation p.Q789* 0.42 TCGA-SX-A7SN-01 2 191524460 191524460 G T NAB1 Missense_Mutation p.E186D 0.42 tolerated(0.56) benign(0.046) TCGA-SX-A7SN-01 2 219140208 219140208 T C TMBIM1 Missense_Mutation p.D309G 0.36 deleterious(0.01) benign(0.001) TCGA-SX-A7SN-01 2 230659907 230659907 C T TRIP12 Missense_Mutation p.G1244E 0.28 deleterious(0.01) possibly_damaging(0.895) TCGA-SX-A7SN-01 2 239057702 239057702 G C KLHL30 Missense_Mutation p.R465P 0.42 deleterious(0.01) probably_damaging(0.963) TCGA-SX-A7SN-01 2 26467482 26467482 A G HADHA 5'UTR 0.30 TCGA-SX-A7SN-01 2 43958687 43958687 T C PLEKHH2 Silent p.P963P 0.36 TCGA-SX-A7SN-01 2 45645662 45645662 A C SRBD1 Missense_Mutation p.N725K 0.38 tolerated(0.09) possibly_damaging(0.773) TCGA-SX-A7SN-01 2 54874386 54874386 G C SPTBN1 Missense_Mutation p.S1662T 0.45 tolerated(0.07) benign(0.102) TCGA-SX-A7SN-01 3 126260730 126260730 T C CHST13 Missense_Mutation p.V112A 0.32 deleterious(0.02) benign(0.064) TCGA-SX-A7SN-01 3 169511417 169511417 A G LRRC34 3'UTR 0.47 TCGA-SX-A7SN-01 3 38408332 38408332 C A XYLB Missense_Mutation p.Q181K 0.36 tolerated(0.12) benign(0.009) TCGA-SX-A7SN-01 3 47205421 47205421 C T SETD2 5'UTR 0.08 TCGA-SX-A7SN-01 3 49114324 49114324 G A QRICH1 Nonsense_Mutation p.Q43* 0.38 TCGA-SX-A7SN-01 3 52003518 52003518 G A ABHD14B Missense_Mutation p.A186V 0.41 deleterious(0) probably_damaging(1) TCGA-SX-A7SN-01 4 119944601 119944601 A C SYNPO2 Missense_Mutation p.K41T 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-SX-A7SN-01 4 153897841 153897841 C T FHDC1 Missense_Mutation p.T1133M 0.38 deleterious(0) probably_damaging(0.939) TCGA-SX-A7SN-01 4 186318028 186318028 C T ANKRD37 5'UTR 0.54 TCGA-SX-A7SN-01 4 85758174 85758174 C G WDFY3 Missense_Mutation p.D162H 0.36 deleterious(0) possibly_damaging(0.853) TCGA-SX-A7SN-01 5 114860103 114860103 A G FEM1C Silent p.L586L 0.38 TCGA-SX-A7SN-01 5 135272473 135272473 T A FBXL21 5'Flank 0.43 TCGA-SX-A7SN-01 5 140263609 140263609 G T PCDHA13 Missense_Mutation p.G586C 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.886) TCGA-SX-A7SN-01 5 177632987 177632988 - A HNRNPAB Frame_Shift_Ins p.D120Rfs*22 0.27 TCGA-SX-A7SN-01 5 178045754 178045754 T C CLK4 Missense_Mutation p.N63D 0.39 tolerated(0.22) benign(0.195) TCGA-SX-A7SN-01 5 32789717 32789717 A G AC026703.1 Silent p.S70S 0.43 TCGA-SX-A7SN-01 5 75970433 75970433 C T IQGAP2 Silent p.A1142A 0.37 TCGA-SX-A7SN-01 6 107111042 107111042 C A QRSL1 Missense_Mutation p.Q450K 0.21 deleterious(0) probably_damaging(0.992) TCGA-SX-A7SN-01 6 150211134 150211134 C T RAET1E Missense_Mutation p.G78E 0.33 tolerated(0.09) possibly_damaging(0.874) TCGA-SX-A7SN-01 6 33231610 33231610 G - VPS52 Frame_Shift_Del p.S556* 0.26 TCGA-SX-A7SN-01 6 43269967 43269967 T C SLC22A7 Missense_Mutation p.L364P 0.31 deleterious(0.01) benign(0.077) TCGA-SX-A7SN-01 6 51924726 51924726 C A PKHD1 Missense_Mutation p.K411N 0.23 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SN-01 6 71377783 71377783 C A SMAP1 Silent p.L19L 0.42 TCGA-SX-A7SN-01 6 74228567 74228567 G T EEF1A1 Missense_Mutation p.P209H 0.46 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-SX-A7SN-01 7 100958534 100958534 G T RABL5 Missense_Mutation p.H147N 0.38 tolerated(0.1) possibly_damaging(0.821) TCGA-SX-A7SN-01 7 148892698 148892698 C A ZNF282 Missense_Mutation p.T6K 0.41 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-SX-A7SN-01 7 22534402 22534402 T A STEAP1B Missense_Mutation p.N25Y 0.35 tolerated_low_confidence(0.21) benign(0.137) TCGA-SX-A7SN-01 7 73038696 73038696 G A MLXIPL Missense_Mutation p.R43C 0.38 deleterious(0) probably_damaging(0.982) TCGA-SX-A7SN-01 7 98506430 98506430 G C TRRAP Missense_Mutation p.V399L 0.42 benign(0.002) TCGA-SX-A7SN-01 7 99117529 99117529 C T ZKSCAN5 Silent p.S211S 0.51 TCGA-SX-A7SN-01 8 55537660 55537660 G A RP1 Silent p.E406E 0.38 TCGA-SX-A7SN-01 8 68200291 68200291 T C ARFGEF1 Missense_Mutation p.K309R 0.36 tolerated(0.23) benign(0.01) TCGA-SX-A7SN-01 9 101498890 101498890 T G ANKS6 Missense_Mutation p.I843L 0.17 tolerated_low_confidence(0.12) probably_damaging(0.977) TCGA-SX-A7SN-01 9 102730737 102730737 G A STX17 Missense_Mutation p.A231T 0.36 tolerated(0.09) benign(0.064) TCGA-SX-A7SN-01 9 140332422 140332422 C A ENTPD8 Nonsense_Mutation p.E81* 0.47 TCGA-SX-A7SN-01 9 27547995 27547995 T G C9orf72 3'UTR 0.62 TCGA-SX-A7SN-01 9 36204095 36204095 G A CLTA Nonsense_Mutation p.W135* 0.31 TCGA-SX-A7SN-01 9 86518501 86518501 T C KIF27 Missense_Mutation p.K311R 0.38 deleterious(0.01) probably_damaging(0.914) TCGA-SX-A7SN-01 X 122766884 122766884 T C THOC2 Missense_Mutation p.Y715C 0.77 deleterious(0) possibly_damaging(0.76) TCGA-SX-A7SN-01 X 13336836 13336836 T C ATXN3L 3'UTR 0.86 TCGA-SX-A7SN-01 X 152853625 152853625 C T FAM58A 3'UTR 0.79 TCGA-SX-A7SO-01 10 11308581 11308581 T A CELF2 Missense_Mutation p.S187T 0.41 tolerated(0.57) benign(0.01) TCGA-SX-A7SO-01 10 33123784 33123786 ATA - C10ORF68 In_Frame_Del p.I376del 0.39 TCGA-SX-A7SO-01 10 74884008 74884008 A G NUDT13 Missense_Mutation p.K132R 0.44 tolerated(0.37) benign(0.008) TCGA-SX-A7SO-01 10 85997255 85997255 G A LRIT1 Missense_Mutation p.R104W 0.58 deleterious(0.01) probably_damaging(0.987) TCGA-SX-A7SO-01 11 113860244 113860244 G C HTR3A Missense_Mutation p.R437T 0.39 tolerated(0.19) benign(0.205) TCGA-SX-A7SO-01 11 26743093 26743093 G C SLC5A12 Missense_Mutation p.L57V 0.46 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SO-01 11 4936639 4936639 T A OR51G2 Silent p.T85T 0.47 TCGA-SX-A7SO-01 11 56086707 56086707 A T OR8K3 Missense_Mutation p.N309Y 0.50 deleterious_low_confidence(0) benign(0.379) TCGA-SX-A7SO-01 11 64607688 64607688 C T CDC42BPG Missense_Mutation p.R162H 0.12 deleterious(0.01) benign(0.086) TCGA-SX-A7SO-01 11 799527 799527 G C PIDD Missense_Mutation p.S838C 0.38 deleterious(0.02) probably_damaging(1) TCGA-SX-A7SO-01 12 113823023 113823023 G A PLBD2 Missense_Mutation p.M407I 0.37 tolerated(0.16) benign(0.009) TCGA-SX-A7SO-01 12 130941200 130941200 G A RIMBP2 Nonsense_Mutation p.Q50* 0.14 TCGA-SX-A7SO-01 12 57850456 57850456 C G INHBE Missense_Mutation p.S293C 0.39 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SO-01 13 113893814 113893814 G C CUL4A Silent p.R328R 0.42 TCGA-SX-A7SO-01 15 40916020 40916020 C - CASC5 Frame_Shift_Del p.P1213Lfs*5 0.30 TCGA-SX-A7SO-01 15 56968913 56968913 A G ZNF280D Silent p.V455V 0.49 TCGA-SX-A7SO-01 15 64967353 64967353 G C ZNF609 Missense_Mutation p.G767A 0.46 tolerated(0.62) benign(0.013) TCGA-SX-A7SO-01 15 90347170 90347170 A T ANPEP Missense_Mutation p.S415T 0.41 tolerated(0.4) benign(0.264) TCGA-SX-A7SO-01 15 90349600 90349600 T C ANPEP Missense_Mutation p.N72S 0.42 deleterious(0.01) benign(0.108) TCGA-SX-A7SO-01 16 29888690 29888690 C T SEZ6L2 Missense_Mutation p.R604H 0.52 deleterious(0) probably_damaging(0.922) TCGA-SX-A7SO-01 16 525007 525007 G C RAB11FIP3 Intron 0.34 TCGA-SX-A7SO-01 17 34182703 34182703 G T C17orf66 Missense_Mutation p.L444I 0.38 deleterious(0.01) probably_damaging(1) TCGA-SX-A7SO-01 17 35300395 35300395 C - LHX1 Frame_Shift_Del p.E399Kfs*2 0.11 TCGA-SX-A7SO-01 17 39323904 39323904 C T KRTAP4-3 Missense_Mutation p.S174N 0.43 tolerated(0.13) unknown(0) TCGA-SX-A7SO-01 17 56492851 56492851 G C RNF43 Missense_Mutation p.L30V 0.44 deleterious(0.04) benign(0.383) TCGA-SX-A7SO-01 17 76118811 76118811 C A TMC6 Nonsense_Mutation p.E368* 0.43 TCGA-SX-A7SO-01 17 8784018 8784018 C T PIK3R5 Missense_Mutation p.A861T 0.40 tolerated(0.59) benign(0.003) TCGA-SX-A7SO-01 19 1043151 1043151 A C ABCA7 Missense_Mutation p.S231R 0.45 tolerated(0.08) benign(0.004) TCGA-SX-A7SO-01 19 19408123 19408123 G T SUGP1 Nonsense_Mutation p.Y306* 0.37 TCGA-SX-A7SO-01 19 23938352 23938352 T A ZNF681 Missense_Mutation p.E2V 0.41 deleterious(0.04) possibly_damaging(0.788) TCGA-SX-A7SO-01 19 30505796 30505796 T - URI1 Frame_Shift_Del p.S478Lfs*5 0.34 TCGA-SX-A7SO-01 19 36642572 36642572 T C COX7A1 Missense_Mutation p.Q34R 0.12 deleterious(0) probably_damaging(0.998) TCGA-SX-A7SO-01 19 46308270 46308270 T C RSPH6A Missense_Mutation p.E298G 0.10 deleterious(0.01) benign(0.232) TCGA-SX-A7SO-01 19 9525361 9525361 A T ZNF266 Silent p.V80V 0.34 TCGA-SX-A7SO-01 1 117156796 117156796 C T IGSF3 Silent p.V141V 0.53 TCGA-SX-A7SO-01 1 13802427 13802427 C T LRRC38 Missense_Mutation p.V258M 0.45 deleterious(0) probably_damaging(0.971) TCGA-SX-A7SO-01 1 186026523 186026524 - ATTCTTTCAGGTA HMCN1 Frame_Shift_Ins 0.13 TCGA-SX-A7SO-01 1 21155712 21155712 A C EIF4G3 Missense_Mutation p.I1322S 0.37 deleterious(0.01) probably_damaging(0.978) TCGA-SX-A7SO-01 1 237758908 237758908 G A RYR2 Missense_Mutation p.G1516E 0.52 probably_damaging(1) TCGA-SX-A7SO-01 1 37949235 37949235 A T ZC3H12A 3'UTR 0.32 TCGA-SX-A7SO-01 1 75114960 75114960 C A C1orf173 Silent p.L21L 0.44 TCGA-SX-A7SO-01 1 94049639 94049639 A G BCAR3 Silent p.D323D 0.33 TCGA-SX-A7SO-01 20 2517943 2517943 G A TMC2 Silent p.K21K 0.32 TCGA-SX-A7SO-01 20 3915636 3915645 CTTACTTTCT - RNF24 Splice_Site p.X123_splice 0.17 TCGA-SX-A7SO-01 21 43176962 43176962 A G RIPK4 Missense_Mutation p.L66P 0.62 deleterious(0) probably_damaging(1) TCGA-SX-A7SO-01 22 38565425 38565425 G T PLA2G6 Missense_Mutation p.F3L 0.38 deleterious(0.04) benign(0.228) TCGA-SX-A7SO-01 2 202970625 202970625 C A AC079354.1 Nonsense_Mutation p.S489* 0.51 TCGA-SX-A7SO-01 2 74405936 74405936 C T MOB1A 5'UTR 0.50 TCGA-SX-A7SO-01 2 84774641 84774641 G A DNAH6 Missense_Mutation p.R364Q 0.19 deleterious(0.02) possibly_damaging(0.588) TCGA-SX-A7SO-01 3 119347690 119347690 G C PLA1A Missense_Mutation p.A422P 0.49 deleterious(0.01) possibly_damaging(0.623) TCGA-SX-A7SO-01 3 122274833 122274833 G A PARP9 Missense_Mutation p.S97F 0.49 deleterious(0.04) possibly_damaging(0.474) TCGA-SX-A7SO-01 3 4741539 4741539 T A ITPR1 Missense_Mutation p.L1469M 0.42 tolerated(0.05) probably_damaging(0.996) TCGA-SX-A7SO-01 3 49308828 49308828 C A C3orf62 Nonsense_Mutation p.E197* 0.36 TCGA-SX-A7SO-01 3 49756686 49756686 G A AMIGO3 Silent p.N71N 0.45 TCGA-SX-A7SO-01 3 66436766 66436766 G C LRIG1 Intron 0.30 TCGA-SX-A7SO-01 4 4436549 4436549 G C STX18 Missense_Mutation p.T217R 0.55 tolerated(0.56) benign(0.002) TCGA-SX-A7SO-01 5 137244511 137244511 C T PKD2L2 Missense_Mutation p.R402C 0.40 deleterious(0.03) benign(0.11) TCGA-SX-A7SO-01 6 70970367 70970367 C T COL9A1 Missense_Mutation p.G481E 0.35 probably_damaging(0.999) TCGA-SX-A7SO-01 7 148851297 148851297 G A ZNF398 Silent p.K95K 0.37 TCGA-SX-A7SO-01 7 155599506 155599518 CTGAAACAGCCGA - SHH Intron 0.40 TCGA-SX-A7SO-01 9 131085323 131085323 C T COQ4 Silent p.G33G 0.06 TCGA-SX-A7SP-01 10 102762190 102762190 A T LZTS2 5'UTR 0.64 TCGA-SX-A7SP-01 10 104678459 104678459 C A CNNM2 Silent p.I74I 0.35 TCGA-SX-A7SP-01 10 129899796 129899796 A G MKI67 Missense_Mutation p.I3144T 0.04 tolerated(0.77) benign(0.001) TCGA-SX-A7SP-01 10 3180128 3180128 A C PITRM1 3'UTR 0.33 TCGA-SX-A7SP-01 10 38406703 38406703 T C ZNF37A Silent p.N208N 0.29 TCGA-SX-A7SP-01 10 46968622 46968622 G A SYT15 Missense_Mutation p.P105L 0.24 tolerated(0.77) benign(0.001) TCGA-SX-A7SP-01 10 5260875 5260875 C T AKR1C4 3'UTR 0.23 TCGA-SX-A7SP-01 11 108535923 108535923 G A DDX10 Missense_Mutation p.D15N 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.866) TCGA-SX-A7SP-01 11 57506447 57506447 T A TMX2 Missense_Mutation p.Y184N 0.19 deleterious(0) probably_damaging(1) TCGA-SX-A7SP-01 11 57583823 57583823 T A CTNND1 3'UTR 0.37 TCGA-SX-A7SP-01 11 7949415 7949415 G C OR10A6 Silent p.G265G 0.35 TCGA-SX-A7SP-01 11 7949417 7949417 C T OR10A6 Missense_Mutation p.G265S 0.33 tolerated(1) benign(0.004) TCGA-SX-A7SP-01 12 121659899 121659899 T A P2RX4 Silent p.I135I 0.26 TCGA-SX-A7SP-01 12 121858061 121858061 C A RNF34 Missense_Mutation p.T218N 0.12 tolerated(0.48) benign(0.002) TCGA-SX-A7SP-01 12 122656855 122656855 G T IL31 3'UTR 0.45 TCGA-SX-A7SP-01 12 123470897 123470897 A C PITPNM2 Missense_Mutation p.F1243V 0.32 tolerated(0.25) benign(0.169) TCGA-SX-A7SP-01 12 16043580 16043580 A - STRAP Frame_Shift_Del p.Y127Lfs*3 0.23 TCGA-SX-A7SP-01 12 20774323 20774323 G C PDE3A Missense_Mutation p.K506N 0.19 tolerated(0.41) benign(0.001) TCGA-SX-A7SP-01 12 48359115 48359115 C T TMEM106C Missense_Mutation p.R80C 0.28 deleterious(0) probably_damaging(0.959) TCGA-SX-A7SP-01 12 50190029 50190029 C T NCKAP5L Silent p.P538P 0.38 TCGA-SX-A7SP-01 12 68719340 68719340 G T MDM1 Missense_Mutation p.R172S 0.37 deleterious(0) possibly_damaging(0.545) TCGA-SX-A7SP-01 13 113832522 113832522 G A PCID2 Missense_Mutation p.T451M 0.29 deleterious(0) possibly_damaging(0.673) TCGA-SX-A7SP-01 13 50590073 50590073 A T KCNRG Silent p.S148S 0.35 TCGA-SX-A7SP-01 14 24545746 24545746 C T CPNE6 Missense_Mutation p.P382L 0.32 deleterious(0.01) probably_damaging(0.951) TCGA-SX-A7SP-01 14 31554030 31554030 G A AP4S1 Missense_Mutation p.C141Y 0.26 deleterious_low_confidence(0.01) benign(0.202) TCGA-SX-A7SP-01 14 35783593 35783596 TCTA - PSMA6 Frame_Shift_Del p.L206Qfs*9 0.27 TCGA-SX-A7SP-01 14 45705110 45705110 T C MIS18BP1 Missense_Mutation p.I419V 0.33 tolerated(0.75) benign(0.005) TCGA-SX-A7SP-01 14 72055984 72055984 G A SIPA1L1 Silent p.V465V 0.33 TCGA-SX-A7SP-01 14 74416673 74416673 C T FAM161B Intron 0.16 TCGA-SX-A7SP-01 14 92040502 92040502 A - AL133373.1 3'UTR 0.30 TCGA-SX-A7SP-01 15 33023709 33023709 C T GREM1 3'UTR 0.30 TCGA-SX-A7SP-01 15 40505677 40505677 T C BUB1B Splice_Site p.X893_splice 0.36 TCGA-SX-A7SP-01 15 45567781 45567781 T C SLC28A2 3'UTR 0.26 TCGA-SX-A7SP-01 15 59358971 59358971 A C RNF111 Silent p.R459R 0.27 TCGA-SX-A7SP-01 15 69003120 69003120 A T CORO2B Missense_Mutation p.E128V 0.34 tolerated(0.06) benign(0.004) TCGA-SX-A7SP-01 15 74742277 74742277 C G UBL7 Missense_Mutation p.G222R 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-SX-A7SP-01 15 75183852 75183852 A - MPI Frame_Shift_Del p.N93Tfs*66 0.25 TCGA-SX-A7SP-01 15 82335702 82335702 A T MEX3B Silent p.S503S 0.27 TCGA-SX-A7SP-01 16 12145718 12145718 A C SNX29 Missense_Mutation p.K255Q 0.20 deleterious(0.04) benign(0.151) TCGA-SX-A7SP-01 16 14340738 14340738 T C MKL2 Missense_Mutation p.S541P 0.41 tolerated(0.14) possibly_damaging(0.791) TCGA-SX-A7SP-01 16 19726133 19726133 G T KNOP1 Missense_Mutation p.S75R 0.21 tolerated(0.06) benign(0.006) TCGA-SX-A7SP-01 16 69364051 69364051 C T PDF Silent p.A141A 0.08 TCGA-SX-A7SP-01 16 90109648 90109648 C T GAS8 Silent p.A444A 0.26 TCGA-SX-A7SP-01 17 17109421 17109421 C T PLD6 Silent p.A60A 0.25 TCGA-SX-A7SP-01 17 18219977 18219977 G A SMCR8 Missense_Mutation p.D292N 0.26 tolerated(0.2) benign(0.002) TCGA-SX-A7SP-01 17 38318253 38318254 - G CASC3 Splice_Site p.X153_splice 0.22 TCGA-SX-A7SP-01 17 51902187 51902187 T C KIF2B Missense_Mutation p.V598A 0.21 tolerated(0.15) benign(0.002) TCGA-SX-A7SP-01 17 686403 686403 C T RNMTL1 Missense_Mutation p.S132L 0.14 tolerated(0.23) benign(0) TCGA-SX-A7SP-01 17 7287452 7287452 G A TNK1 Missense_Mutation p.R249H 0.17 deleterious(0) probably_damaging(0.991) TCGA-SX-A7SP-01 18 28919735 28919735 A G DSG1 Silent p.T478T 0.36 TCGA-SX-A7SP-01 18 67996042 67996042 C A SOCS6 3'UTR 0.26 TCGA-SX-A7SP-01 18 72775890 72775890 G A ZNF407 Silent p.R2071R 0.39 TCGA-SX-A7SP-01 18 77659475 77659476 - TCA KCNG2 In_Frame_Ins p.S354delinsFT 0.10 TCGA-SX-A7SP-01 19 11560110 11560110 G T PRKCSH Missense_Mutation p.M490I 0.37 tolerated(0.23) benign(0.02) TCGA-SX-A7SP-01 19 15061136 15061136 C A SLC1A6 Missense_Mutation p.L522F 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-SX-A7SP-01 19 52618818 52618818 A T ZNF616 Silent p.R533R 0.28 TCGA-SX-A7SP-01 19 55967191 55967191 G T ISOC2 Missense_Mutation p.P54T 0.20 deleterious(0.01) possibly_damaging(0.779) TCGA-SX-A7SP-01 19 56011955 56011955 T - SSC5D Frame_Shift_Del p.W801Gfs*22 0.19 TCGA-SX-A7SP-01 19 58549300 58549300 G T ZSCAN1 Missense_Mutation p.R32S 0.33 tolerated(0.52) benign(0.083) TCGA-SX-A7SP-01 1 19526243 19526243 G C UBR4 Missense_Mutation p.R94G 0.36 benign(0.046) TCGA-SX-A7SP-01 1 243319673 243319675 TGT - CEP170 In_Frame_Del p.K1253_H1254delinsN 0.29 TCGA-SX-A7SP-01 1 29609231 29609231 C T PTPRU Missense_Mutation p.R638W 0.12 deleterious(0) probably_damaging(0.924) TCGA-SX-A7SP-01 1 31191691 31191691 C T MATN1 Silent p.K185K 0.33 TCGA-SX-A7SP-01 1 85029061 85029061 G C CTBS Missense_Mutation p.A279G 0.34 deleterious(0.04) benign(0.16) TCGA-SX-A7SP-01 1 90493075 90493075 G - ZNF326 Frame_Shift_Del p.E522Rfs*3 0.17 TCGA-SX-A7SP-01 1 94341933 94341933 T C DNTTIP2 Missense_Mutation p.K520E 0.28 tolerated(1) benign(0.006) TCGA-SX-A7SP-01 1 97278922 97278922 C G PTBP2 Missense_Mutation p.N519K 0.30 tolerated(0.08) possibly_damaging(0.775) TCGA-SX-A7SP-01 20 43036091 43036091 T C HNF4A Missense_Mutation p.F121L 0.46 tolerated(0.1) probably_damaging(0.994) TCGA-SX-A7SP-01 20 56137207 56137207 C T PCK1 Missense_Mutation p.T102I 0.19 deleterious(0.03) probably_damaging(0.923) TCGA-SX-A7SP-01 22 30188510 30188510 G C ASCC2 Missense_Mutation p.P645R 0.42 deleterious(0) probably_damaging(0.991) TCGA-SX-A7SP-01 2 101183077 101183077 T C PDCL3 Missense_Mutation p.L40P 0.32 tolerated(0.17) benign(0.005) TCGA-SX-A7SP-01 2 130738537 130738537 G A RAB6C 3'UTR 0.24 TCGA-SX-A7SP-01 2 144525908 144525908 A C ARHGAP15 3'UTR 0.45 TCGA-SX-A7SP-01 2 183829479 183829479 T C NCKAP1 Silent p.Q568Q 0.04 TCGA-SX-A7SP-01 2 207527877 207527877 G C DYTN Missense_Mutation p.H461Q 0.30 tolerated(1) benign(0) TCGA-SX-A7SP-01 2 217364702 217364709 TGGCACTG - RPL37A Frame_Shift_Del p.H56Ffs*62 0.24 TCGA-SX-A7SP-01 2 218712647 218712647 C G TNS1 Missense_Mutation p.G740R 0.27 tolerated(0.2) possibly_damaging(0.905) TCGA-SX-A7SP-01 2 238737996 238737996 T C RBM44 Missense_Mutation p.S914P 0.25 tolerated(0.11) benign(0.015) TCGA-SX-A7SP-01 2 27503099 27503099 G A DNAJC5G Intron 0.28 TCGA-SX-A7SP-01 3 108229380 108229399 TTATTAAAGCAATCCACCAA - MYH15 Frame_Shift_Del p.F13Lfs*18 0.11 TCGA-SX-A7SP-01 3 13860881 13860881 C T WNT7A Missense_Mutation p.G204S 0.47 deleterious(0) probably_damaging(0.997) TCGA-SX-A7SP-01 3 15452755 15452763 ATGAAAGGT - METTL6 Missense_Mutation 0.23 TCGA-SX-A7SP-01 3 196050905 196050905 T G TM4SF19 Intron 0.14 TCGA-SX-A7SP-01 3 49005966 49005966 G T ARIH2 Splice_Site p.X180_splice 0.49 TCGA-SX-A7SP-01 3 69092928 69092928 G A TMF1 Silent p.A517A 0.05 TCGA-SX-A7SP-01 4 123160922 123160922 T G KIAA1109 Missense_Mutation p.F1362C 0.36 possibly_damaging(0.784) TCGA-SX-A7SP-01 4 123170744 123170744 C A KIAA1109 Missense_Mutation p.Q1873K 0.34 benign(0.021) TCGA-SX-A7SP-01 4 39449950 39449950 G C KLB Missense_Mutation p.G927R 0.30 deleterious(0) probably_damaging(1) TCGA-SX-A7SP-01 4 48487117 48487117 C A SLC10A4 Missense_Mutation p.F253L 0.34 tolerated(0.37) benign(0.007) TCGA-SX-A7SP-01 4 69197866 69197866 G A YTHDC1 Silent p.L359L 0.20 TCGA-SX-A7SP-01 5 178418914 178418914 A T GRM6 Nonsense_Mutation p.Y225* 0.40 TCGA-SX-A7SP-01 5 65018155 65018157 CGC - NLN 5'UTR 0.32 TCGA-SX-A7SP-01 5 90041606 90041606 T G GPR98 Missense_Mutation p.F3656L 0.28 possibly_damaging(0.827) TCGA-SX-A7SP-01 6 168709714 168709714 G A DACT2 Silent p.L241L 0.33 TCGA-SX-A7SP-01 6 3456326 3456326 G - SLC22A23 Frame_Shift_Del p.T157Pfs*84 0.21 TCGA-SX-A7SP-01 6 42995142 42995142 G C RRP36 Missense_Mutation p.E190D 0.37 deleterious(0.01) benign(0.075) TCGA-SX-A7SP-01 6 42995151 42995151 G C RRP36 Silent p.L193L 0.35 TCGA-SX-A7SP-01 7 100683299 100683299 A T MUC17 Missense_Mutation p.S2868C 0.47 unknown(0) TCGA-SX-A7SP-01 7 149545262 149545262 T A ZNF862 Missense_Mutation p.V227D 0.45 tolerated_low_confidence(0.09) benign(0.157) TCGA-SX-A7SP-01 7 34125603 34125603 G A BMPER Silent p.G548G 0.19 TCGA-SX-A7SP-01 7 73013866 73013866 C T MLXIPL Missense_Mutation p.S354N 0.16 tolerated(0.6) benign(0.002) TCGA-SX-A7SP-01 7 77408776 77408776 T A RSBN1L 3'UTR 0.36 TCGA-SX-A7SP-01 8 126085457 126085457 A G KIAA0196 Missense_Mutation p.L363P 0.30 deleterious(0.01) possibly_damaging(0.73) TCGA-SX-A7SP-01 8 12881557 12881557 T C KIAA1456 3'UTR 0.19 TCGA-SX-A7SP-01 9 118210 118210 A T FOXD4 5'UTR 0.24 TCGA-SX-A7SP-01 9 123313158 123313158 T C CDK5RAP2 Missense_Mutation p.E73G 0.33 deleterious(0) possibly_damaging(0.728) TCGA-SX-A7SP-01 9 128728343 128728343 G A PBX3 3'UTR 0.26 TCGA-SX-A7SP-01 9 134319670 134319670 G A PRRC2B Missense_Mutation p.V190I 0.31 tolerated(0.08) possibly_damaging(0.526) TCGA-SX-A7SP-01 9 33295177 33295177 C T NFX1 Missense_Mutation p.P262L 0.14 tolerated(0.17) benign(0.017) TCGA-SX-A7SP-01 X 128614706 128614706 A G SMARCA1 Missense_Mutation p.L805P 0.50 tolerated(0.12) probably_damaging(0.973) TCGA-SX-A7SP-01 X 32486636 32486636 C G DMD Missense_Mutation p.M1047I 0.06 benign(0.012) TCGA-SX-A7SP-01 X 44949073 44949073 C T KDM6A Nonsense_Mutation p.Q1212* 0.47 TCGA-SX-A7SP-01 X 49041324 49041324 A C PRICKLE3 Intron 0.12 TCGA-SX-A7SP-01 X 73811367 73811367 G T RLIM Missense_Mutation p.H595N 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-SX-A7SQ-01 10 104356961 104356961 C A SUFU Missense_Mutation p.A274D 0.44 tolerated(0.23) benign(0.403) TCGA-SX-A7SQ-01 10 115947804 115947804 C T TDRD1 Nonsense_Mutation p.Q72* 0.46 TCGA-SX-A7SQ-01 11 105782776 105782776 T A GRIA4 Intron 0.06 TCGA-SX-A7SQ-01 11 105923709 105923709 C A KBTBD3 Silent p.V569V 0.41 TCGA-SX-A7SQ-01 11 119043637 119043637 G T NLRX1 Silent p.S56S 0.06 TCGA-SX-A7SQ-01 11 120976623 120976623 A G TECTA Missense_Mutation p.K50E 0.36 tolerated(0.56) benign(0.077) TCGA-SX-A7SQ-01 11 17554888 17554888 G A USH1C Intron 0.47 TCGA-SX-A7SQ-01 11 6245688 6245688 G T FAM160A2 Missense_Mutation p.P20H 0.37 tolerated(0.15) possibly_damaging(0.871) TCGA-SX-A7SQ-01 11 6341515 6341515 C T PRKCDBP Silent p.L64L 0.41 TCGA-SX-A7SQ-01 11 72423565 72423565 G A ARAP1 Silent p.L266L 0.46 TCGA-SX-A7SQ-01 11 83770507 83770507 C G DLG2 Missense_Mutation p.R257P 0.43 deleterious(0.03) probably_damaging(0.997) TCGA-SX-A7SQ-01 11 89531578 89531579 AT - TRIM49 Frame_Shift_Del p.M360Vfs*9 0.25 TCGA-SX-A7SQ-01 12 104160113 104160113 G T STAB2 Nonstop_Mutation p.*2552Lext*19 0.61 TCGA-SX-A7SQ-01 12 56537664 56537664 C - ESYT1 3'UTR 0.42 TCGA-SX-A7SQ-01 12 58131312 58131312 C T AGAP2 Missense_Mutation p.A240T 0.05 tolerated_low_confidence(0.21) benign(0) TCGA-SX-A7SQ-01 12 92814817 92814817 T C CLLU1OS Missense_Mutation p.D92G 0.63 tolerated_low_confidence(0.63) benign(0) TCGA-SX-A7SQ-01 13 111926181 111926181 T G ARHGEF7 Missense_Mutation p.M386R 0.47 deleterious(0) probably_damaging(0.993) TCGA-SX-A7SQ-01 13 26542768 26542768 A - ATP8A2 Frame_Shift_Del p.K1110Sfs*18 0.24 TCGA-SX-A7SQ-01 13 39450509 39450509 G T FREM2 Missense_Mutation p.R2845L 0.69 deleterious(0) probably_damaging(0.997) TCGA-SX-A7SQ-01 14 105268770 105268770 T G ZBTB42 Missense_Mutation p.F412L 0.37 deleterious(0.01) possibly_damaging(0.812) TCGA-SX-A7SQ-01 14 23303565 23303565 C T MRPL52 3'UTR 0.41 TCGA-SX-A7SQ-01 14 24718615 24718615 C G TGM1 Silent p.V786V 0.31 TCGA-SX-A7SQ-01 14 53190578 53190578 C - PSMC6 Intron 0.24 TCGA-SX-A7SQ-01 14 73959093 73959093 T C HEATR4 Intron 0.47 TCGA-SX-A7SQ-01 15 60797762 60797762 T C RORA Missense_Mutation p.Q329R 0.43 tolerated(0.19) benign(0.007) TCGA-SX-A7SQ-01 15 75699417 75699417 T C SIN3A Silent p.T462T 0.38 TCGA-SX-A7SQ-01 15 82545087 82545087 T - EFTUD1 Frame_Shift_Del p.E63Dfs*8 0.28 TCGA-SX-A7SQ-01 15 90349503 90349503 C T ANPEP Silent p.K104K 0.52 TCGA-SX-A7SQ-01 15 91453418 91453418 G A MAN2A2 Silent p.G491G 0.34 TCGA-SX-A7SQ-01 16 1464001 1464001 C G UNKL Missense_Mutation p.A45P 0.31 deleterious(0.04) benign(0.004) TCGA-SX-A7SQ-01 16 23387172 23387172 C A SCNN1B Missense_Mutation p.D422E 0.40 deleterious(0.02) possibly_damaging(0.508) TCGA-SX-A7SQ-01 16 2814863 2814863 C G SRRM2 Missense_Mutation p.P1445R 0.58 unknown(0) TCGA-SX-A7SQ-01 16 56864565 56864565 G T NUP93 Missense_Mutation p.W351C 0.31 tolerated(0.16) benign(0.016) TCGA-SX-A7SQ-01 16 603351 603351 G A CAPN15 Silent p.V1032V 0.22 TCGA-SX-A7SQ-01 16 603352 603352 A T CAPN15 Missense_Mutation p.I1033F 0.23 deleterious(0) possibly_damaging(0.821) TCGA-SX-A7SQ-01 16 72164506 72164506 G A PMFBP1 Silent p.I521I 0.24 TCGA-SX-A7SQ-01 16 72164507 72164507 A T PMFBP1 Missense_Mutation p.I521N 0.25 tolerated(0.35) benign(0.206) TCGA-SX-A7SQ-01 16 75263231 75263231 T C BCAR1 3'UTR 0.50 TCGA-SX-A7SQ-01 17 18770619 18770619 A G PRPSAP2 Silent p.K48K 0.55 TCGA-SX-A7SQ-01 17 36714573 36714573 C A SRCIN1 Silent p.V697V 0.63 TCGA-SX-A7SQ-01 17 39887810 39887810 G A HAP1 Missense_Mutation p.A335V 0.34 tolerated(0.17) possibly_damaging(0.682) TCGA-SX-A7SQ-01 17 40864332 40864332 A G EZH1 Missense_Mutation p.L459P 0.57 deleterious(0.01) benign(0.203) TCGA-SX-A7SQ-01 17 41975630 41975630 C T MPP2 Silent p.K50K 0.34 TCGA-SX-A7SQ-01 17 61497660 61497660 C T TANC2 Silent p.V1439V 0.31 TCGA-SX-A7SQ-01 17 62496291 62496291 T C DDX5 Missense_Mutation p.N532S 0.29 tolerated_low_confidence(0.17) benign(0.038) TCGA-SX-A7SQ-01 17 67286078 67286078 A - ABCA5 Frame_Shift_Del p.D569Efs*3 0.32 TCGA-SX-A7SQ-01 17 78332113 78332113 G A RNF213 Missense_Mutation p.G3630S 0.54 benign(0.045) TCGA-SX-A7SQ-01 17 80521382 80521382 C G FOXK2 Missense_Mutation p.A191G 0.33 tolerated(0.15) possibly_damaging(0.826) TCGA-SX-A7SQ-01 18 8819148 8819148 G T SOGA2 Missense_Mutation p.R1016M 0.41 deleterious(0) probably_damaging(0.981) TCGA-SX-A7SQ-01 19 16536113 16536113 C T EPS15L1 Silent p.V191V 0.41 TCGA-SX-A7SQ-01 19 16617533 16617539 CGCTTGA - C19orf44 Frame_Shift_Del p.L367Vfs*93 0.32 TCGA-SX-A7SQ-01 19 19823847 19823847 T A ZNF14 Silent p.G81G 0.44 TCGA-SX-A7SQ-01 19 36497828 36497828 G T SYNE4 Silent p.R148R 0.43 TCGA-SX-A7SQ-01 19 37064265 37064265 A T ZNF529 5'Flank 0.31 TCGA-SX-A7SQ-01 19 55049225 55049225 C T KIR3DX1 Silent p.P330P 0.49 TCGA-SX-A7SQ-01 1 109235289 109235289 C A PRPF38B Missense_Mutation p.Q26K 0.45 tolerated_low_confidence(0.35) benign(0.018) TCGA-SX-A7SQ-01 1 145075945 145075945 T A PDE4DIP 5'UTR 0.14 TCGA-SX-A7SQ-01 1 154990939 154990939 A C ZBTB7B 3'Flank 0.29 TCGA-SX-A7SQ-01 1 15545967 15545967 C T TMEM51 Silent p.L164L 0.40 TCGA-SX-A7SQ-01 1 161197092 161197092 T C TOMM40L Silent p.Y76Y 0.49 TCGA-SX-A7SQ-01 1 161695843 161695843 C A FCRLB Silent p.P180P 0.49 TCGA-SX-A7SQ-01 1 16945262 16945262 A - RP5-1182A14.5 3'Flank 0.11 TCGA-SX-A7SQ-01 1 229461133 229461133 T G CCSAP Missense_Mutation p.K221T 0.45 deleterious(0) probably_damaging(0.982) TCGA-SX-A7SQ-01 1 229685017 229685017 C T ABCB10 Missense_Mutation p.A228T 0.40 deleterious(0.02) possibly_damaging(0.74) TCGA-SX-A7SQ-01 1 240978050 240978050 T C RGS7 Missense_Mutation p.R271G 0.38 deleterious(0.02) probably_damaging(0.983) TCGA-SX-A7SQ-01 1 247695079 247695079 G T OR2C3 Missense_Mutation p.H245Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SQ-01 1 28303887 28303887 A G EYA3 Intron 0.51 TCGA-SX-A7SQ-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.11 TCGA-SX-A7SQ-01 20 34313043 34313043 C G RBM39 Missense_Mutation p.D151H 0.61 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SQ-01 20 42089554 42089554 A G SRSF6 Missense_Mutation p.R296G 0.52 tolerated_low_confidence(0.07) unknown(0) TCGA-SX-A7SQ-01 20 42089559 42089559 C T SRSF6 Silent p.S297S 0.53 TCGA-SX-A7SQ-01 20 5574056 5574056 T C GPCPD1 Missense_Mutation p.M50V 0.28 tolerated(0.41) benign(0) TCGA-SX-A7SQ-01 21 41385296 41385296 G T DSCAM Missense_Mutation p.P1902T 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-SX-A7SQ-01 21 44479371 44479371 A - CBS Frame_Shift_Del p.L397* 0.25 TCGA-SX-A7SQ-01 22 19344495 19344495 G CGAT HIRA In_Frame_Ins p.L772delinsIV 0.37 TCGA-SX-A7SQ-01 22 26286842 26286842 G A MYO18B Silent p.K1478K 0.52 TCGA-SX-A7SQ-01 22 43634883 43634883 C T SCUBE1 Missense_Mutation p.V269I 0.50 tolerated(0.08) benign(0.027) TCGA-SX-A7SQ-01 22 50282397 50282397 C T ZBED4 3'UTR 0.37 TCGA-SX-A7SQ-01 2 114256806 114256806 C - FOXD4L1 5'UTR 0.30 TCGA-SX-A7SQ-01 2 128262338 128262338 C A IWS1 Nonsense_Mutation p.E381* 0.08 TCGA-SX-A7SQ-01 2 132249824 132249824 C T MZT2A Silent p.E42E 0.25 TCGA-SX-A7SQ-01 2 166730923 166730923 A C TTC21B 3'UTR 0.25 TCGA-SX-A7SQ-01 2 208615780 208615780 A T CCNYL1 Silent p.A251A 0.38 TCGA-SX-A7SQ-01 2 208633223 208633223 C T FZD5 Missense_Mutation p.D81N 0.46 deleterious(0.03) probably_damaging(1) TCGA-SX-A7SQ-01 2 39934204 39934204 C T TMEM178A Missense_Mutation p.T177I 0.43 deleterious(0.02) probably_damaging(0.998) TCGA-SX-A7SQ-01 2 47641475 47641475 G C MSH2 Missense_Mutation p.G287A 0.36 deleterious(0) possibly_damaging(0.803) TCGA-SX-A7SQ-01 2 71661907 71661907 G A ZNF638 Silent p.Q1969Q 0.43 TCGA-SX-A7SQ-01 3 134076482 134076482 G - AMOTL2 3'UTR 0.35 TCGA-SX-A7SQ-01 3 145788373 145788373 T C PLOD2 3'UTR 0.65 TCGA-SX-A7SQ-01 3 147128271 147128271 G T ZIC1 Silent p.S124S 0.61 TCGA-SX-A7SQ-01 3 147128272 147128272 G T ZIC1 Missense_Mutation p.A125S 0.62 tolerated(0.45) probably_damaging(0.989) TCGA-SX-A7SQ-01 3 172533501 172533501 G C ECT2 Missense_Mutation p.K836N 0.58 deleterious(0) possibly_damaging(0.451) TCGA-SX-A7SQ-01 3 33557518 33557518 C A CLASP2 Missense_Mutation p.K1377N 0.43 tolerated(0.09) probably_damaging(0.98) TCGA-SX-A7SQ-01 3 52325107 52325107 T C GLYCTK Missense_Mutation p.L170P 0.29 deleterious(0) probably_damaging(0.984) TCGA-SX-A7SQ-01 3 57894814 57894814 G A SLMAP Missense_Mutation p.E512K 0.54 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-SX-A7SQ-01 3 69101289 69101289 A G TMF1 5'UTR 0.55 TCGA-SX-A7SQ-01 3 93624955 93624955 T C PROS1 Missense_Mutation p.N127D 0.04 tolerated(0.31) possibly_damaging(0.597) TCGA-SX-A7SQ-01 4 13605423 13605423 T - BOD1L1 Frame_Shift_Del p.K1034Rfs*33 0.30 TCGA-SX-A7SQ-01 4 152570836 152570836 C - FAM160A1 Frame_Shift_Del p.C549Afs*72 0.30 TCGA-SX-A7SQ-01 4 169204723 169204723 C A DDX60 Silent p.V532V 0.33 TCGA-SX-A7SQ-01 4 169204739 169204739 C T DDX60 Missense_Mutation p.R527H 0.33 tolerated(0.61) benign(0.001) TCGA-SX-A7SQ-01 4 177249348 177249349 GG T SPCS3 Splice_Site p.X137_splice 0.30 TCGA-SX-A7SQ-01 4 3519844 3519845 - C LRPAP1 Frame_Shift_Ins p.E223Gfs*27 0.34 TCGA-SX-A7SQ-01 4 42400234 42400234 C A SHISA3 Missense_Mutation p.T54N 0.05 tolerated(0.1) benign(0.019) TCGA-SX-A7SQ-01 5 112770097 112770097 T C TSSK1B Missense_Mutation p.D147G 0.66 tolerated(0.15) benign(0.081) TCGA-SX-A7SQ-01 5 135416191 135416191 G T VTRNA2-1 RNA 0.33 TCGA-SX-A7SQ-01 5 140742098 140742098 C A PCDHGB2 Missense_Mutation p.P799H 0.28 deleterious(0.04) benign(0.014) TCGA-SX-A7SQ-01 5 178413656 178413656 G A GRM6 Silent p.G533G 0.38 TCGA-SX-A7SQ-01 5 36152357 36152357 C T SKP2 5'UTR 0.57 TCGA-SX-A7SQ-01 5 54456223 54456223 A G GPX8 Missense_Mutation p.K68R 0.58 tolerated(0.12) benign(0.098) TCGA-SX-A7SQ-01 5 5464804 5464804 T C KIAA0947 Missense_Mutation p.L1786S 0.26 tolerated(0.05) benign(0.273) TCGA-SX-A7SQ-01 5 61699671 61699671 C T DIMT1 5'UTR 0.30 TCGA-SX-A7SQ-01 5 79374755 79374755 T G THBS4 Missense_Mutation p.I759M 0.24 deleterious(0) possibly_damaging(0.655) TCGA-SX-A7SQ-01 5 96215384 96215384 G A ERAP2 5'UTR 0.31 TCGA-SX-A7SQ-01 6 26252273 26252274 - AAA HIST1H2BH 3'UTR 0.35 TCGA-SX-A7SQ-01 6 41712422 41712422 T A PGC Missense_Mutation p.T62S 0.54 tolerated(0.22) benign(0) TCGA-SX-A7SQ-01 6 41712423 41712423 C G PGC Silent p.V61V 0.54 TCGA-SX-A7SQ-01 6 52357086 52357086 C G EFHC1 Missense_Mutation p.H624D 0.43 tolerated(0.25) benign(0.001) TCGA-SX-A7SQ-01 6 532588 532588 T G EXOC2 Missense_Mutation p.E754A 0.51 tolerated(0.14) benign(0.015) TCGA-SX-A7SQ-01 6 54216153 54216153 A T TINAG Missense_Mutation p.T362S 0.49 tolerated(0.24) benign(0.403) TCGA-SX-A7SQ-01 6 7578720 7578720 C T DSP Silent p.Y1003Y 0.46 TCGA-SX-A7SQ-01 7 11446609 11446609 G C THSD7A Missense_Mutation p.D1330E 0.23 tolerated(1) benign(0.002) TCGA-SX-A7SQ-01 7 116417463 116417463 C T MET Missense_Mutation p.H1112Y 0.58 deleterious(0) probably_damaging(0.996) TCGA-SX-A7SQ-01 7 1474169 1474170 CC - MICALL2 3'UTR 0.13 TCGA-SX-A7SQ-01 7 26224563 26224563 A T NFE2L3 Silent p.P415P 0.27 TCGA-SX-A7SQ-01 7 56128546 56128546 A G CCT6A Silent p.E420E 0.57 TCGA-SX-A7SQ-01 7 6196544 6196544 C T USP42 Silent p.V1267V 0.27 TCGA-SX-A7SQ-01 7 76922400 76922400 C T CCDC146 Silent p.F849F 0.31 TCGA-SX-A7SQ-01 8 12885509 12885509 T - KIAA1456 3'UTR 0.27 TCGA-SX-A7SQ-01 9 116021053 116021053 G A SLC31A1 Silent p.L94L 0.38 TCGA-SX-A7SQ-01 9 125672913 125672914 - AAC ZBTB6 3'UTR 0.47 TCGA-SX-A7SQ-01 9 139304610 139304610 A T SDCCAG3 Missense_Mutation p.F51Y 0.48 deleterious_low_confidence(0.04) benign(0.424) TCGA-SX-A7SQ-01 9 139905075 139905075 G A ABCA2 Silent p.T2057T 0.44 TCGA-SX-A7SQ-01 9 15225959 15225959 A G TTC39B Silent p.D109D 0.41 TCGA-SX-A7SQ-01 9 70862595 70862595 T A CBWD3 Missense_Mutation p.L103H 0.45 deleterious(0.02) possibly_damaging(0.816) TCGA-SX-A7SR-01 10 121587405 121587405 G T INPP5F 3'UTR 0.45 TCGA-SX-A7SR-01 10 135095734 135095734 G A TUBGCP2 Missense_Mutation p.A829V 0.33 tolerated(0.2) benign(0.081) TCGA-SX-A7SR-01 10 135095735 135095735 C T TUBGCP2 Missense_Mutation p.A829T 0.33 tolerated(0.91) benign(0.012) TCGA-SX-A7SR-01 10 17164807 17164807 T C CUBN Missense_Mutation p.M194V 0.39 tolerated(0.94) benign(0.003) TCGA-SX-A7SR-01 10 323264 323264 A T DIP2C 3'UTR 0.35 TCGA-SX-A7SR-01 10 5494436 5494436 T - NET1 Frame_Shift_Del p.L160Rfs*5 0.19 TCGA-SX-A7SR-01 10 81145866 81145866 C T ZCCHC24 3'UTR 0.39 TCGA-SX-A7SR-01 11 17156501 17156501 A G PIK3C2A Missense_Mutation p.L658P 0.34 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SR-01 11 31805208 31805208 A G ELP4 3'UTR 0.33 TCGA-SX-A7SR-01 11 33763317 33763317 A G FBXO3 3'UTR 0.50 TCGA-SX-A7SR-01 11 35641396 35641396 C G FJX1 Silent p.A404A 0.24 TCGA-SX-A7SR-01 11 58391563 58391569 AGTGGCA - CNTF Frame_Shift_Del p.V58Afs*8 0.30 TCGA-SX-A7SR-01 11 65622690 65622690 C T CFL1 3'UTR 0.11 TCGA-SX-A7SR-01 11 73715620 73715620 G T UCP3 Silent p.P184P 0.21 TCGA-SX-A7SR-01 12 121747554 121747554 T C ANAPC5 Missense_Mutation p.K669R 0.42 tolerated(0.83) benign(0.015) TCGA-SX-A7SR-01 12 133295551 133295551 C T PGAM5 Intron 0.28 TCGA-SX-A7SR-01 12 20803382 20803382 A T PDE3A Missense_Mutation p.N925Y 0.20 deleterious(0) probably_damaging(0.979) TCGA-SX-A7SR-01 12 52913749 52913749 G T KRT5 Missense_Mutation p.A111D 0.25 tolerated(0.19) benign(0.246) TCGA-SX-A7SR-01 12 56975006 56975007 - T RBMS2 Frame_Shift_Ins p.F195Lfs*2 0.32 TCGA-SX-A7SR-01 12 57324030 57324030 C T SDR9C7 Silent p.E180E 0.39 TCGA-SX-A7SR-01 12 57599001 57599001 G A LRP1 Silent p.G3768G 0.30 TCGA-SX-A7SR-01 12 80083574 80083574 T A PAWR Missense_Mutation p.I151F 0.23 deleterious(0) probably_damaging(0.994) TCGA-SX-A7SR-01 12 93793130 93793130 C A NUDT4 Missense_Mutation p.S174Y 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.718) TCGA-SX-A7SR-01 12 95907668 95907668 A T METAP2 Silent p.G475G 0.28 TCGA-SX-A7SR-01 13 52730287 52730287 A G NEK3 Missense_Mutation p.S14P 0.35 deleterious(0) probably_damaging(0.988) TCGA-SX-A7SR-01 13 77853046 77853046 T G MYCBP2 Missense_Mutation p.I161L 0.35 possibly_damaging(0.651) TCGA-SX-A7SR-01 14 102029642 102029642 G T DIO3 3'UTR 0.30 TCGA-SX-A7SR-01 14 105930891 105930891 A T MTA1 Missense_Mutation p.N444I 0.38 tolerated(0.06) possibly_damaging(0.589) TCGA-SX-A7SR-01 14 20839416 20839416 A - TEP1 Frame_Shift_Del p.F2426Lfs*14 0.21 TCGA-SX-A7SR-01 14 51081222 51081222 A T ATL1 Missense_Mutation p.K285N 0.33 deleterious(0.02) benign(0.031) TCGA-SX-A7SR-01 14 53248584 53248584 A T GNPNAT1 Missense_Mutation p.V88D 0.34 deleterious(0) probably_damaging(0.997) TCGA-SX-A7SR-01 14 70633821 70633821 G T SLC8A3 Missense_Mutation p.A440D 0.08 deleterious(0) probably_damaging(1) TCGA-SX-A7SR-01 14 88945296 88945296 T A PTPN21 Nonsense_Mutation p.K827* 0.27 TCGA-SX-A7SR-01 15 100943017 100943018 - T CERS3 Frame_Shift_Ins p.E352Gfs*21 0.13 TCGA-SX-A7SR-01 15 101550745 101550745 A - LRRK1 Frame_Shift_Del p.N362Ifs*3 0.23 TCGA-SX-A7SR-01 15 28451410 28451410 G A HERC2 Silent p.A2396A 0.32 TCGA-SX-A7SR-01 15 56686971 56686972 TT - TEX9 Frame_Shift_Del p.F257Rfs*8 0.24 TCGA-SX-A7SR-01 15 79339110 79339110 C T RASGRF1 Missense_Mutation p.V286I 0.31 deleterious(0.04) possibly_damaging(0.74) TCGA-SX-A7SR-01 15 97328262 97328262 A - SPATA8 Frame_Shift_Del p.R79Gfs*10 0.28 TCGA-SX-A7SR-01 16 15225023 15225023 G A RP11-1186N24.5 RNA 0.28 TCGA-SX-A7SR-01 16 318694 318694 C A RGS11 3'UTR 0.19 TCGA-SX-A7SR-01 16 47733349 47733349 C A PHKB 3'UTR 0.54 TCGA-SX-A7SR-01 16 53301317 53301317 C G CHD9 Missense_Mutation p.P1478A 0.50 probably_damaging(0.994) TCGA-SX-A7SR-01 16 57735929 57735929 A T CCDC135 Missense_Mutation p.M196L 0.43 tolerated(1) benign(0.005) TCGA-SX-A7SR-01 16 84075764 84075764 G A SLC38A8 5'Flank 0.19 TCGA-SX-A7SR-01 17 19720216 19720216 C T ULK2 Silent p.Q314Q 0.45 TCGA-SX-A7SR-01 17 2274584 2274584 C A SGSM2 Silent p.G484G 0.21 TCGA-SX-A7SR-01 17 28418892 28418892 T C EFCAB5 Missense_Mutation p.I1314T 0.30 tolerated(0.06) possibly_damaging(0.842) TCGA-SX-A7SR-01 17 29120581 29120581 T A CRLF3 Missense_Mutation p.H238L 0.57 deleterious(0.01) benign(0.234) TCGA-SX-A7SR-01 17 37856348 37856348 G A ERBB2 5'UTR 0.52 TCGA-SX-A7SR-01 17 4060165 4060165 G T CYB5D2 Missense_Mutation p.G195V 0.45 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SR-01 17 4060190 4060190 C T CYB5D2 Silent p.V203V 0.43 TCGA-SX-A7SR-01 17 45916327 45916327 A G SCRN2 Missense_Mutation p.I201T 0.18 deleterious(0.02) possibly_damaging(0.483) TCGA-SX-A7SR-01 17 73127154 73127154 A T NT5C Missense_Mutation p.C108S 0.24 deleterious(0.03) probably_damaging(0.933) TCGA-SX-A7SR-01 17 7849226 7849226 C A CNTROB Missense_Mutation p.L639I 0.56 tolerated(0.11) possibly_damaging(0.827) TCGA-SX-A7SR-01 17 79860780 79860780 G A NPB 3'UTR 0.45 TCGA-SX-A7SR-01 17 80656542 80656542 G T RAB40B 5'UTR 0.14 TCGA-SX-A7SR-01 19 2041888 2041888 C T MKNK2 Missense_Mutation p.C299Y 0.43 deleterious(0) benign(0.058) TCGA-SX-A7SR-01 19 41106076 41106076 G C LTBP4 Missense_Mutation p.K148N 0.32 tolerated(0.2) benign(0.001) TCGA-SX-A7SR-01 19 51485606 51485606 G T KLK7 Missense_Mutation p.A17D 0.17 deleterious(0.01) benign(0.189) TCGA-SX-A7SR-01 19 5206685 5206685 T A PTPRS 3'UTR 0.57 TCGA-SX-A7SR-01 19 55591174 55591174 G A EPS8L1 Silent p.L78L 0.32 TCGA-SX-A7SR-01 19 57325017 57325017 G C PEG3 3'UTR 0.31 TCGA-SX-A7SR-01 19 814451 814451 C T LPPR3 Missense_Mutation p.G300S 0.50 deleterious(0.04) probably_damaging(0.996) TCGA-SX-A7SR-01 1 11181321 11181334 CAGCCACAGCAGCT AGCTTGGCC MTOR Frame_Shift_Del p.K2301Rfs*4 0.33 TCGA-SX-A7SR-01 1 11863702 11863702 A T MTHFR 5'Flank 0.36 TCGA-SX-A7SR-01 1 14075886 14075886 T A PRDM2 Missense_Mutation p.W139R 0.35 possibly_damaging(0.816) TCGA-SX-A7SR-01 1 150259058 150259058 T G C1orf51 Missense_Mutation p.L284V 0.35 tolerated(0.12) benign(0.083) TCGA-SX-A7SR-01 1 150621097 150621097 A G GOLPH3L Silent p.T186T 0.34 TCGA-SX-A7SR-01 1 156906702 156906702 A C ARHGEF11 Silent p.A1512A 0.34 TCGA-SX-A7SR-01 1 160144537 160144537 G C ATP1A4 Missense_Mutation p.G771R 0.40 deleterious(0) probably_damaging(1) TCGA-SX-A7SR-01 1 225555578 225555578 G T DNAH14 Missense_Mutation p.E3961D 0.33 probably_damaging(0.91) TCGA-SX-A7SR-01 1 246829056 246829056 T - CNST Frame_Shift_Del p.F677Sfs*42 0.26 TCGA-SX-A7SR-01 1 2560862 2560862 C A MMEL1 Missense_Mutation p.R21L 0.40 deleterious(0.02) benign(0.003) TCGA-SX-A7SR-01 1 39760763 39760763 C G MACF1 Missense_Mutation p.L739V 0.34 possibly_damaging(0.503) TCGA-SX-A7SR-01 1 77528710 77528710 C T ST6GALNAC5 Missense_Mutation p.P277L 0.33 probably_damaging(0.976) TCGA-SX-A7SR-01 1 9815300 9815300 G T CLSTN1 Silent p.S104S 0.37 TCGA-SX-A7SR-01 20 36151076 36151076 G T NNAT Missense_Mutation p.R54M 0.42 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-SX-A7SR-01 20 62198210 62198210 G C HELZ2 Missense_Mutation p.S834C 0.33 deleterious(0) probably_damaging(1) TCGA-SX-A7SR-01 21 34100452 34100452 C A SYNJ1 5'Flank 0.36 TCGA-SX-A7SR-01 21 42770936 42770936 T C MX2 Missense_Mutation p.F421S 0.36 deleterious(0.01) probably_damaging(1) TCGA-SX-A7SR-01 21 46021785 46021785 T A KRTAP10-7 3'UTR 0.33 TCGA-SX-A7SR-01 22 28490116 28490118 TGC - TTC28 In_Frame_Del p.Q1294del 0.37 TCGA-SX-A7SR-01 22 30690962 30690962 C A TBC1D10A Missense_Mutation p.A210S 0.30 deleterious(0.02) possibly_damaging(0.893) TCGA-SX-A7SR-01 22 31331096 31331096 A G MORC2 Missense_Mutation p.I560T 0.42 tolerated(0.24) benign(0.357) TCGA-SX-A7SR-01 2 11706689 11706689 G C GREB1 Missense_Mutation p.G121R 0.44 deleterious(0) probably_damaging(1) TCGA-SX-A7SR-01 2 165809229 165809229 A T SLC38A11 Missense_Mutation p.S17T 0.26 deleterious(0.04) benign(0.042) TCGA-SX-A7SR-01 2 17902443 17902443 A - SMC6 Frame_Shift_Del p.L271* 0.22 TCGA-SX-A7SR-01 2 239229266 239229266 T G TRAF3IP1 5'UTR 0.33 TCGA-SX-A7SR-01 2 27850108 27850108 A G CCDC121 Missense_Mutation p.F349L 0.34 tolerated(0.24) benign(0.015) TCGA-SX-A7SR-01 2 31600100 31600100 C - XDH Frame_Shift_Del p.E416Sfs*19 0.40 TCGA-SX-A7SR-01 2 37571769 37571769 G A QPCT 5'UTR 0.29 TCGA-SX-A7SR-01 2 71415520 71415520 C T PAIP2B 3'UTR 0.29 TCGA-SX-A7SR-01 3 131101936 131101940 GGAGA T NUDT16 3'UTR 0.44 TCGA-SX-A7SR-01 3 133497449 133497449 T - TF Frame_Shift_Del p.F695Sfs*15 0.20 TCGA-SX-A7SR-01 3 182871611 182871611 T A LAMP3 Silent p.A206A 0.35 TCGA-SX-A7SR-01 3 48310320 48310320 G T ZNF589 3'UTR 0.33 TCGA-SX-A7SR-01 3 65350346 65350346 T A MAGI1 Silent p.A1115A 0.41 TCGA-SX-A7SR-01 4 123175369 123175369 A C KIAA1109 Missense_Mutation p.D1981A 0.46 probably_damaging(0.951) TCGA-SX-A7SR-01 4 71027324 71027325 - AA C4orf40 3'UTR 0.19 TCGA-SX-A7SR-01 4 74316462 74316462 G A AFP Missense_Mutation p.E474K 0.19 deleterious(0) probably_damaging(1) TCGA-SX-A7SR-01 5 131796682 131796682 T G C5orf56 3'UTR 0.44 TCGA-SX-A7SR-01 5 139495999 139495999 T C PURA 3'UTR 0.33 TCGA-SX-A7SR-01 5 139947338 139947338 A T SLC35A4 Missense_Mutation p.Y195F 0.35 deleterious(0) probably_damaging(0.989) TCGA-SX-A7SR-01 5 150111032 150111032 G A DCTN4 Missense_Mutation p.T193I 0.29 deleterious(0.05) benign(0.089) TCGA-SX-A7SR-01 5 176019773 176019773 G A CDHR2 Missense_Mutation p.E1262K 0.33 tolerated(0.66) benign(0.001) TCGA-SX-A7SR-01 5 43294814 43294814 G C HMGCS1 Missense_Mutation p.S352C 0.31 tolerated(0.65) benign(0.001) TCGA-SX-A7SR-01 5 83362406 83362406 A C EDIL3 Missense_Mutation p.M224R 0.37 deleterious(0) probably_damaging(0.954) TCGA-SX-A7SR-01 6 35387920 35387920 C A PPARD Silent p.S49S 0.38 TCGA-SX-A7SR-01 6 43027174 43027174 A T MRPL2 5'UTR 0.22 TCGA-SX-A7SR-01 7 107572669 107572669 C T LAMB1 Missense_Mutation p.D1448N 0.44 tolerated(0.09) probably_damaging(0.928) TCGA-SX-A7SR-01 7 117417705 117417705 C T CTTNBP2 Missense_Mutation p.E880K 0.46 tolerated(0.9) benign(0.002) TCGA-SX-A7SR-01 7 150725694 150725694 T A ABCB8 Missense_Mutation p.V31D 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.452) TCGA-SX-A7SR-01 7 23750041 23750041 G A STK31 Intron 0.58 TCGA-SX-A7SR-01 8 27918040 27918040 G T NUGGC Missense_Mutation p.L334M 0.31 deleterious(0) probably_damaging(0.989) TCGA-SX-A7SR-01 8 48625228 48625240 AGAGTCTGCTGCT - SPIDR Frame_Shift_Del p.K661Ifs*10 0.18 TCGA-SX-A7SR-01 8 57906212 57906212 C A IMPAD1 5'UTR 0.05 TCGA-SX-A7SR-01 9 101540705 101540705 G A ANKS6 Missense_Mutation p.S457F 0.38 deleterious(0) benign(0.361) TCGA-SX-A7SR-01 9 127916020 127916020 A T PPP6C Nonsense_Mutation p.L191* 0.40 TCGA-SX-A7SR-01 9 130502080 130502080 G A SH2D3C Missense_Mutation p.P763L 0.32 tolerated(0.93) possibly_damaging(0.573) TCGA-SX-A7SR-01 9 136030630 136030630 C G GBGT1 Missense_Mutation p.E98D 0.29 tolerated(0.78) benign(0.006) TCGA-SX-A7SR-01 9 140008368 140008368 A G DPP7 Missense_Mutation p.L145P 0.24 deleterious(0) probably_damaging(0.991) TCGA-SX-A7SR-01 9 27036575 27036576 - CTC IFT74 Intron 0.23 TCGA-SX-A7SR-01 X 101909675 101909675 T C GPRASP1 Silent p.D278D 0.68 TCGA-SX-A7SR-01 X 109697329 109697329 T C RGAG1 Missense_Mutation p.C1162R 0.75 tolerated_low_confidence(0.09) benign(0.015) TCGA-SX-A7SR-01 X 11160422 11160422 C T ARHGAP6 Missense_Mutation p.E730K 0.63 deleterious(0.01) possibly_damaging(0.735) TCGA-SX-A7SS-01 10 100152221 100152222 - T PYROXD2 Frame_Shift_Ins p.P344Tfs*16 0.38 TCGA-SX-A7SS-01 10 103294516 103294516 G C BTRC Missense_Mutation p.C399S 0.26 deleterious(0.05) probably_damaging(0.937) TCGA-SX-A7SS-01 10 70182647 70182647 G T DNA2 Missense_Mutation p.L823I 0.63 tolerated(0.5) benign(0.038) TCGA-SX-A7SS-01 10 70432683 70432683 G C TET1 Missense_Mutation p.E1569Q 0.57 tolerated(0.05) benign(0.051) TCGA-SX-A7SS-01 10 71332496 71332496 C T NEUROG3 Missense_Mutation p.A102T 0.53 deleterious(0.01) probably_damaging(0.98) TCGA-SX-A7SS-01 10 76818209 76818209 G A DUPD1 Missense_Mutation p.P22S 0.57 tolerated(0.12) benign(0.03) TCGA-SX-A7SS-01 11 18738437 18738444 ACTTCCAC - IGSF22 Frame_Shift_Del p.W360Qfs*9 0.25 TCGA-SX-A7SS-01 11 61732247 61732247 T G FTH1 Missense_Mutation p.E168D 0.40 deleterious(0.03) benign(0.035) TCGA-SX-A7SS-01 11 64892052 64892052 C T MRPL49 Missense_Mutation p.P53S 0.47 deleterious(0.01) probably_damaging(0.986) TCGA-SX-A7SS-01 11 67933440 67933440 G A SUV420H1 Intron 0.36 TCGA-SX-A7SS-01 11 71850798 71850798 C G FOLR3 Missense_Mutation p.P263A 0.10 deleterious(0.03) possibly_damaging(0.589) TCGA-SX-A7SS-01 11 93494797 93494797 A G C11orf54 Silent p.A247A 0.43 TCGA-SX-A7SS-01 12 120510462 120510462 G A CCDC64 Missense_Mutation p.G413S 0.54 deleterious(0.01) probably_damaging(0.976) TCGA-SX-A7SS-01 12 12814283 12814283 G C GPR19 Missense_Mutation p.A367G 0.32 tolerated(0.25) benign(0.108) TCGA-SX-A7SS-01 12 30792466 30792466 A G IPO8 Silent p.D824D 0.33 TCGA-SX-A7SS-01 12 72017305 72017306 - CCATG ZFC3H1 Frame_Shift_Ins p.L1527Hfs*36 0.39 TCGA-SX-A7SS-01 12 93169703 93169703 A - EEA1 3'UTR 0.16 TCGA-SX-A7SS-01 13 28006937 28006937 C G GTF3A Missense_Mutation p.H186Q 0.38 deleterious(0) possibly_damaging(0.546) TCGA-SX-A7SS-01 14 24424419 24424419 A T DHRS4 Missense_Mutation p.T102S 0.45 tolerated(0.4) benign(0.204) TCGA-SX-A7SS-01 14 64957106 64957106 A - ZBTB25 Frame_Shift_Del p.F49Sfs*3 0.27 TCGA-SX-A7SS-01 14 86091774 86091774 T C FLRT2 3'UTR 0.37 TCGA-SX-A7SS-01 14 91142993 91142993 G A TTC7B Silent p.D342D 0.31 TCGA-SX-A7SS-01 15 29346965 29346966 - CT APBA2 Frame_Shift_Ins p.G294Sfs*19 0.31 TCGA-SX-A7SS-01 15 42109123 42109123 C A MAPKBP1 Missense_Mutation p.A540E 0.36 deleterious(0) probably_damaging(1) TCGA-SX-A7SS-01 15 62362830 62362830 A C C2CD4A 3'UTR 0.30 TCGA-SX-A7SS-01 15 77227974 77227974 G C RCN2 Missense_Mutation p.D120H 0.41 deleterious(0.01) benign(0.049) TCGA-SX-A7SS-01 16 16267179 16267179 C A ABCC6 Nonsense_Mutation p.G917* 0.34 TCGA-SX-A7SS-01 16 19129294 19129308 TCAGTCTGCTAACTT - ITPRIPL2 3'UTR 0.46 TCGA-SX-A7SS-01 16 23641617 23641624 CAAAGTCT - PALB2 Frame_Shift_Del p.D618Tfs*3 0.50 TCGA-SX-A7SS-01 16 2577574 2577574 A C AMDHD2 Missense_Mutation p.I125L 0.26 tolerated(0.68) benign(0.091) TCGA-SX-A7SS-01 16 29998173 29998173 C A TAOK2 Missense_Mutation p.S860R 0.67 tolerated_low_confidence(0.69) benign(0) TCGA-SX-A7SS-01 16 71101222 71101222 T C HYDIN Silent p.E682E 0.26 TCGA-SX-A7SS-01 16 75186809 75186809 C A ZFP1 Intron 0.27 TCGA-SX-A7SS-01 16 84189316 84189316 C T DNAAF1 Missense_Mutation p.P235S 0.22 deleterious(0) benign(0.421) TCGA-SX-A7SS-01 16 84778731 84778731 C T USP10 Missense_Mutation p.S215F 0.28 tolerated_low_confidence(0.12) benign(0.008) TCGA-SX-A7SS-01 16 88503562 88503562 G C ZNF469 Silent p.L3200L 0.27 TCGA-SX-A7SS-01 17 10366192 10366192 A T MYH4 Missense_Mutation p.M333K 0.38 tolerated(0.11) benign(0.379) TCGA-SX-A7SS-01 17 19315946 19315946 C A RNF112 Nonsense_Mutation p.C77* 0.34 TCGA-SX-A7SS-01 17 36708714 36708714 C T SRCIN1 Missense_Mutation p.G817R 0.27 deleterious(0.01) benign(0.156) TCGA-SX-A7SS-01 17 39684113 39684113 G - KRT19 Frame_Shift_Del p.Y130Tfs*48 0.26 TCGA-SX-A7SS-01 17 41343586 41343586 C G NBR1 Missense_Mutation p.S354C 0.27 tolerated(0.18) possibly_damaging(0.827) TCGA-SX-A7SS-01 17 61767096 61767096 G A MAP3K3 Splice_Site p.X386_splice 0.20 TCGA-SX-A7SS-01 17 79503808 79503808 G A FSCN2 Silent p.R446R 0.29 TCGA-SX-A7SS-01 18 18624118 18624118 T A ROCK1 Missense_Mutation p.D207V 0.26 deleterious(0) probably_damaging(1) TCGA-SX-A7SS-01 18 45567075 45567075 T C ZBTB7C Missense_Mutation p.E135G 0.30 tolerated(0.47) benign(0.017) TCGA-SX-A7SS-01 18 50589777 50589777 A C DCC Missense_Mutation p.N363T 0.53 tolerated(0.06) benign(0.005) TCGA-SX-A7SS-01 18 56936510 56936510 G C RAX Missense_Mutation p.A256G 0.64 tolerated(0.08) possibly_damaging(0.796) TCGA-SX-A7SS-01 19 12693708 12693709 - T ZNF490 Frame_Shift_Ins p.D102Efs*5 0.28 TCGA-SX-A7SS-01 19 18180414 18180414 G A IL12RB1 Silent p.D377D 0.50 TCGA-SX-A7SS-01 19 19338444 19338444 C A NCAN Missense_Mutation p.A672D 0.41 tolerated(0.42) benign(0.006) TCGA-SX-A7SS-01 19 20728068 20728068 T G ZNF737 Missense_Mutation p.K314T 0.42 deleterious(0.04) benign(0.247) TCGA-SX-A7SS-01 19 23406231 23406231 A C ZNF724P Missense_Mutation p.H272Q 0.35 deleterious(0.02) benign(0.009) TCGA-SX-A7SS-01 19 33517446 33517446 C A RHPN2 Missense_Mutation p.G93V 0.20 deleterious(0.02) probably_damaging(0.989) TCGA-SX-A7SS-01 19 38949843 38949843 T G RYR1 Missense_Mutation p.V742G 0.33 probably_damaging(0.999) TCGA-SX-A7SS-01 19 39964953 39964953 T C SUPT5H Missense_Mutation p.Y911H 0.36 tolerated(0.22) benign(0.438) TCGA-SX-A7SS-01 19 4306010 4306010 C A FSD1 Missense_Mutation p.S28Y 0.42 deleterious(0.02) benign(0.34) TCGA-SX-A7SS-01 19 44612215 44612215 A G ZNF224 Silent p.V634V 0.35 TCGA-SX-A7SS-01 19 56133157 56133157 C T ZNF784 Missense_Mutation p.R311Q 0.36 tolerated_low_confidence(0.4) benign(0.001) TCGA-SX-A7SS-01 19 5739405 5739405 A T CATSPERD Silent p.S176S 0.32 TCGA-SX-A7SS-01 19 58966867 58966867 G T ZNF324B Missense_Mutation p.G186W 0.48 deleterious(0.02) possibly_damaging(0.759) TCGA-SX-A7SS-01 19 9068211 9068211 T C MUC16 Missense_Mutation p.Q6412R 0.04 unknown(0) TCGA-SX-A7SS-01 1 110279627 110279627 A C GSTM3 3'UTR 0.43 TCGA-SX-A7SS-01 1 11863276 11863276 C G MTHFR 5'UTR 0.35 TCGA-SX-A7SS-01 1 1248221 1248221 G A CPSF3L Missense_Mutation p.H420Y 0.42 deleterious(0) probably_damaging(0.971) TCGA-SX-A7SS-01 1 161140540 161140541 - CTTGGTCCATCTA PPOX Frame_Shift_Ins p.H415Lfs*24 0.17 TCGA-SX-A7SS-01 1 169702796 169702796 A G SELE 5'UTR 0.38 TCGA-SX-A7SS-01 1 173174477 173174478 - A TNFSF4 Intron 0.33 TCGA-SX-A7SS-01 1 178063786 178063786 T C RASAL2 Silent p.L53L 0.41 TCGA-SX-A7SS-01 1 193119495 193119495 G C CDC73 Missense_Mutation p.R297T 0.35 deleterious(0.01) possibly_damaging(0.697) TCGA-SX-A7SS-01 1 223176848 223176848 A G DISP1 Silent p.R703R 0.54 TCGA-SX-A7SS-01 1 22816649 22816649 G A ZBTB40 Missense_Mutation p.E70K 0.39 deleterious(0) possibly_damaging(0.458) TCGA-SX-A7SS-01 1 228871578 228871578 G A RHOU Missense_Mutation p.G30E 0.42 deleterious_low_confidence(0.01) benign(0) TCGA-SX-A7SS-01 1 232094574 232094574 A G DISC1 Missense_Mutation p.E661G 0.55 tolerated(0.18) benign(0.058) TCGA-SX-A7SS-01 1 35453543 35453543 G A ZMYM6 Missense_Mutation p.S1047L 0.39 deleterious(0) possibly_damaging(0.656) TCGA-SX-A7SS-01 1 52704097 52704097 T C ZFYVE9 Silent p.G336G 0.14 TCGA-SX-A7SS-01 1 53420471 53420471 A C SCP2 Missense_Mutation p.I131L 0.04 tolerated(0.09) benign(0.001) TCGA-SX-A7SS-01 1 55181801 55181801 C A TTC4 Intron 0.36 TCGA-SX-A7SS-01 20 47865692 47865692 A T ZNFX1 Missense_Mutation p.L1290Q 0.58 tolerated(0.4) benign(0.028) TCGA-SX-A7SS-01 20 48429466 48429466 G C SLC9A8 Missense_Mutation p.E3Q 0.62 tolerated_low_confidence(0.1) benign(0) TCGA-SX-A7SS-01 21 34951869 34951869 C A DONSON Splice_Site p.X451_splice 0.39 TCGA-SX-A7SS-01 22 21799452 21799458 TCCACAG - HIC2 Frame_Shift_Del p.S90Cfs*182 0.27 TCGA-SX-A7SS-01 22 29957632 29957632 A T NIPSNAP1 Missense_Mutation p.Y148N 0.62 deleterious(0) possibly_damaging(0.635) TCGA-SX-A7SS-01 22 31486118 31486118 C A SMTN Missense_Mutation p.P273T 0.37 tolerated(0.05) benign(0.003) TCGA-SX-A7SS-01 22 47290719 47290719 A C TBC1D22A Missense_Mutation p.I293L 0.33 tolerated(0.87) benign(0.012) TCGA-SX-A7SS-01 2 107049692 107049692 T A RGPD3 Missense_Mutation p.Q752L 0.17 deleterious(0) benign(0.344) TCGA-SX-A7SS-01 2 128482691 128482691 A C WDR33 Missense_Mutation p.I317S 0.41 deleterious(0) unknown(0) TCGA-SX-A7SS-01 2 149243320 149243320 C T MBD5 Missense_Mutation p.S952L 0.35 deleterious_low_confidence(0) unknown(0) TCGA-SX-A7SS-01 2 179606399 179606399 A T TTN Missense_Mutation p.F3854Y 0.33 TCGA-SX-A7SS-01 2 192206229 192206230 - A MYO1B Frame_Shift_Ins p.G132Rfs*5 0.26 TCGA-SX-A7SS-01 2 210824431 210824431 G C UNC80 Missense_Mutation p.R2536T 0.38 probably_damaging(0.981) TCGA-SX-A7SS-01 2 223920173 223920173 C T KCNE4 3'UTR 0.35 TCGA-SX-A7SS-01 2 232577602 232577602 G A PTMA 3'UTR 0.12 TCGA-SX-A7SS-01 2 234581095 234581095 T C UGT1A9 Missense_Mutation p.I172T 0.44 tolerated(0.09) benign(0.003) TCGA-SX-A7SS-01 2 26798881 26798881 T C C2orf70 Silent p.T62T 0.48 TCGA-SX-A7SS-01 2 37429787 37429787 C T CEBPZ-AS1 3'UTR 0.35 TCGA-SX-A7SS-01 2 42931435 42931435 G A MTA3 Missense_Mutation p.G376E 0.40 deleterious(0) possibly_damaging(0.775) TCGA-SX-A7SS-01 2 70188450 70188450 T C ASPRV1 Missense_Mutation p.N124S 0.48 tolerated(0.59) benign(0.003) TCGA-SX-A7SS-01 3 152132779 152132779 T C MBNL1 Missense_Mutation p.L75S 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-SX-A7SS-01 3 172224318 172224318 A G TNFSF10 Silent p.H270H 0.64 TCGA-SX-A7SS-01 3 184947277 184947277 T C EHHADH Missense_Mutation p.T136A 0.40 deleterious(0) possibly_damaging(0.768) TCGA-SX-A7SS-01 3 44636593 44636593 A T ZNF660 Missense_Mutation p.K303I 0.62 deleterious(0.03) possibly_damaging(0.845) TCGA-SX-A7SS-01 3 49740161 49740162 - A RNF123 Frame_Shift_Ins p.N576Kfs*8 0.17 TCGA-SX-A7SS-01 3 52822035 52822035 C A ITIH1 Missense_Mutation p.T653N 0.23 tolerated(0.2) benign(0.284) TCGA-SX-A7SS-01 3 57419454 57419454 T C DNAH12 Missense_Mutation p.E1563G 0.10 tolerated(0.19) possibly_damaging(0.728) TCGA-SX-A7SS-01 3 97311466 97311466 G A EPHA6 Silent p.P799P 0.27 TCGA-SX-A7SS-01 4 114153415 114153415 G A ANK2 Silent p.E161E 0.40 TCGA-SX-A7SS-01 4 122740067 122740067 A C CCNA2 Missense_Mutation p.F335C 0.43 deleterious(0) probably_damaging(0.996) TCGA-SX-A7SS-01 4 146686704 146686704 T C ZNF827 Missense_Mutation p.E1016G 0.49 tolerated(0.07) benign(0.342) TCGA-SX-A7SS-01 4 156841241 156841241 T - TDO2 3'UTR 0.16 TCGA-SX-A7SS-01 4 38990469 38990469 A C TMEM156 Splice_Site p.X247_splice 0.49 TCGA-SX-A7SS-01 4 77357196 77357196 T C SHROOM3 5'UTR 0.39 TCGA-SX-A7SS-01 4 82369435 82369435 T C RASGEF1B Missense_Mutation p.T148A 0.29 tolerated(0.76) benign(0) TCGA-SX-A7SS-01 4 85731169 85731169 G T WDFY3 Nonsense_Mutation p.S739* 0.39 TCGA-SX-A7SS-01 5 121187742 121187742 C A FTMT Silent p.L28L 0.46 TCGA-SX-A7SS-01 5 138716053 138716054 - T SLC23A1 Frame_Shift_Ins p.S168Kfs*132 0.23 TCGA-SX-A7SS-01 5 140751854 140751854 C A PCDHGB3 Silent p.T631T 0.48 TCGA-SX-A7SS-01 5 167812372 167812372 A T WWC1 Missense_Mutation p.Q129L 0.48 tolerated(0.17) benign(0.02) TCGA-SX-A7SS-01 5 33954590 33954590 A T SLC45A2 Nonsense_Mutation p.L303* 0.45 TCGA-SX-A7SS-01 5 39383191 39383191 A G DAB2 Silent p.P290P 0.37 TCGA-SX-A7SS-01 5 95234239 95234240 - AGGTCTTG ELL2 Frame_Shift_Ins p.P411Kfs*38 0.24 TCGA-SX-A7SS-01 6 135308856 135308856 G T HBS1L Missense_Mutation p.T386K 0.06 deleterious(0) probably_damaging(1) TCGA-SX-A7SS-01 6 135358037 135358037 G C HBS1L Intron 0.81 TCGA-SX-A7SS-01 6 167738656 167738656 C T TTLL2 5'UTR 0.88 TCGA-SX-A7SS-01 6 52141273 52141273 T A MCM3 Silent p.G434G 0.82 TCGA-SX-A7SS-01 6 56917572 56917572 A C KIAA1586 Missense_Mutation p.E92A 0.81 tolerated_low_confidence(0.08) benign(0.004) TCGA-SX-A7SS-01 7 100349693 100349693 C A ZAN Silent p.T655T 0.40 TCGA-SX-A7SS-01 7 100349694 100349694 G A ZAN Missense_Mutation p.V656I 0.41 benign(0.198) TCGA-SX-A7SS-01 7 128315824 128315825 TG A FAM71F2 Frame_Shift_Del p.N92Kfs*4 0.46 TCGA-SX-A7SS-01 7 139818990 139818990 G - KDM7A Frame_Shift_Del p.T390Nfs*17 0.28 TCGA-SX-A7SS-01 7 150502057 150502057 A G TMEM176A 3'UTR 0.05 TCGA-SX-A7SS-01 7 150773188 150773188 T C SLC4A2 Missense_Mutation p.L1187P 0.47 deleterious(0.04) benign(0.112) TCGA-SX-A7SS-01 7 25264603 25264603 T G NPVF 3'UTR 0.46 TCGA-SX-A7SS-01 7 25264604 25264604 A T NPVF 3'UTR 0.46 TCGA-SX-A7SS-01 7 82578940 82578940 T G PCLO Missense_Mutation p.K3655T 0.50 unknown(0) TCGA-SX-A7SS-01 8 42015584 42015584 C T AP3M2 Silent p.L133L 0.40 TCGA-SX-A7SS-01 8 66517664 66517664 T G ARMC1 Missense_Mutation p.K192T 0.42 tolerated(0.17) benign(0.01) TCGA-SX-A7SS-01 8 95942503 95942503 A - TP53INP1 3'UTR 0.31 TCGA-SX-A7SS-01 9 124751966 124751966 G C TTLL11 Missense_Mutation p.I349M 0.36 deleterious(0) probably_damaging(0.999) TCGA-SX-A7SS-01 9 132565500 132565500 G T TOR1B Silent p.R3R 0.09 TCGA-SX-A7SS-01 9 138395255 138395255 T A MRPS2 Intron 0.33 TCGA-SX-A7SS-01 9 35697810 35697810 G T TLN1 Nonsense_Mutation p.S2535* 0.52 TCGA-SX-A7SS-01 9 35736483 35736484 - A CREB3 Frame_Shift_Ins p.Q293Tfs*39 0.31 TCGA-SX-A7SS-01 9 94821586 94821604 TATCTCTGCAAGGAAAAGA - SPTLC1 Splice_Site p.X187_splice 0.22 TCGA-SX-A7SS-01 9 97522664 97522664 G C C9orf3 Missense_Mutation p.R200T 0.37 deleterious(0) possibly_damaging(0.517) TCGA-SX-A7SS-01 X 44937747 44937747 T G KDM6A Missense_Mutation p.L979V 0.84 deleterious(0.01) possibly_damaging(0.682) TCGA-SX-A7SS-01 X 48661330 48661330 A G HDAC6 Missense_Mutation p.E49G 0.80 deleterious(0) possibly_damaging(0.849) TCGA-SX-A7SS-01 X 63412149 63412149 T C AMER1 Missense_Mutation p.M340V 1.00 tolerated(0.59) benign(0.127) TCGA-SX-A7SU-01 10 5141579 5141579 C T AKR1C3 Missense_Mutation p.R170C 0.44 tolerated(0.09) benign(0.03) TCGA-SX-A7SU-01 10 70098346 70098346 C A HNRNPH3 Missense_Mutation p.P113Q 0.41 deleterious(0) unknown(0) TCGA-SX-A7SU-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.22 TCGA-SX-A7SU-01 10 91359120 91359120 T C PANK1 Missense_Mutation p.K400R 0.37 tolerated(0.31) benign(0.019) TCGA-SX-A7SU-01 11 118770179 118770179 A G BCL9L Missense_Mutation p.S1149P 0.37 benign(0.001) TCGA-SX-A7SU-01 11 55889939 55889939 C T OR8H3 Silent p.L31L 0.51 TCGA-SX-A7SU-01 11 60689497 60689497 C G TMEM109 Missense_Mutation p.L198V 0.58 tolerated(0.07) possibly_damaging(0.765) TCGA-SX-A7SU-01 11 62744219 62744219 T C SLC22A6 3'UTR 0.47 TCGA-SX-A7SU-01 11 75428970 75428970 C T MOGAT2 Missense_Mutation p.R13C 0.41 deleterious(0) benign(0.168) TCGA-SX-A7SU-01 11 85956180 85956180 A T EED 5'UTR 0.46 TCGA-SX-A7SU-01 12 100796130 100796130 T A SLC17A8 Missense_Mutation p.I259N 0.43 deleterious(0) possibly_damaging(0.892) TCGA-SX-A7SU-01 12 129180454 129180454 G T TMEM132C Missense_Mutation p.V579L 0.28 tolerated(0.06) possibly_damaging(0.542) TCGA-SX-A7SU-01 12 368943 368943 G A SLC6A13 Intron 0.44 TCGA-SX-A7SU-01 13 30814596 30814596 C A KATNAL1 Splice_Site p.X242_splice 0.33 TCGA-SX-A7SU-01 15 90340880 90340880 A G ANPEP Missense_Mutation p.W695R 0.44 deleterious(0) possibly_damaging(0.729) TCGA-SX-A7SU-01 15 90349683 90349683 G A ANPEP Silent p.S44S 0.39 TCGA-SX-A7SU-01 16 69687291 69687291 C G NFAT5 Nonsense_Mutation p.S322* 0.35 TCGA-SX-A7SU-01 17 18429217 18429217 G A FAM106A 3'UTR 0.71 TCGA-SX-A7SU-01 17 35944776 35944776 G A SYNRG Missense_Mutation p.A190V 0.55 tolerated(0.14) probably_damaging(0.971) TCGA-SX-A7SU-01 17 39388890 39388890 G A KRTAP9-3 Missense_Mutation p.C46Y 0.63 deleterious(0.01) unknown(0) TCGA-SX-A7SU-01 17 79862684 79862684 A G PCYT2 3'UTR 0.06 TCGA-SX-A7SU-01 18 44625645 44625646 - AGA KATNAL2 In_Frame_Ins p.K344dup 0.40 TCGA-SX-A7SU-01 19 1056069 1056069 G A ABCA7 Missense_Mutation p.G1415R 0.42 deleterious(0) probably_damaging(0.975) TCGA-SX-A7SU-01 19 33902620 33902621 - CGTGTC PEPD In_Frame_Ins p.G257_H258dup 0.22 TCGA-SX-A7SU-01 19 39687821 39687821 G A NCCRP1 Missense_Mutation p.A67T 0.29 tolerated(0.11) benign(0.016) TCGA-SX-A7SU-01 19 46998129 46998129 G T PNMAL2 Silent p.S198S 0.07 TCGA-SX-A7SU-01 19 50902287 50902287 C T POLD1 Missense_Mutation p.S60L 0.49 tolerated(0.28) benign(0) TCGA-SX-A7SU-01 19 58549141 58549141 G A ZSCAN1 5'UTR 0.36 TCGA-SX-A7SU-01 1 149916007 149916007 T C OTUD7B Missense_Mutation p.R761G 0.42 tolerated_low_confidence(0.4) benign(0) TCGA-SX-A7SU-01 1 44680529 44680529 G A DMAP1 Missense_Mutation p.A118T 0.41 tolerated(0.22) benign(0.016) TCGA-SX-A7SU-01 20 48098450 48098450 C - KCNB1 Splice_Site p.X189_splice 0.30 TCGA-SX-A7SU-01 21 47549587 47549587 C G COL6A2 Intron 0.50 TCGA-SX-A7SU-01 22 19512284 19512284 C T CLDN5 Intron 0.06 TCGA-SX-A7SU-01 22 30416092 30416092 A G MTMR3 Missense_Mutation p.D815G 0.22 tolerated_low_confidence(0.18) benign(0.003) TCGA-SX-A7SU-01 2 209308188 209308188 G A PTH2R Missense_Mutation p.E209K 0.46 tolerated(0.09) possibly_damaging(0.744) TCGA-SX-A7SU-01 2 219619110 219619110 T A TTLL4 Nonstop_Mutation p.*1200Kext*28 0.38 TCGA-SX-A7SU-01 2 233995352 233995352 T A INPP5D Missense_Mutation p.L220H 0.50 deleterious(0) probably_damaging(1) TCGA-SX-A7SU-01 2 29063423 29063423 T - SPDYA Intron 0.24 TCGA-SX-A7SU-01 2 38812820 38812820 A T HNRNPLL Missense_Mutation p.L166H 0.46 deleterious(0) probably_damaging(1) TCGA-SX-A7SU-01 3 172835337 172835337 C A SPATA16 Missense_Mutation p.R62I 0.35 deleterious(0) possibly_damaging(0.506) TCGA-SX-A7SU-01 3 195250521 195250521 C T PPP1R2 Silent p.E124E 0.39 TCGA-SX-A7SU-01 4 48552657 48552657 C G FRYL Missense_Mutation p.E1529Q 0.36 deleterious(0.03) probably_damaging(0.993) TCGA-SX-A7SU-01 4 91321220 91321220 G A CCSER1 Missense_Mutation p.D515N 0.39 deleterious(0) probably_damaging(0.998) TCGA-SX-A7SU-01 4 91321221 91321221 A C CCSER1 Missense_Mutation p.D515A 0.39 deleterious(0) probably_damaging(0.998) TCGA-SX-A7SU-01 5 125939501 125939501 G C PHAX Missense_Mutation p.K112N 0.44 deleterious(0.04) benign(0.015) TCGA-SX-A7SU-01 5 137726963 137726963 G A KDM3B Missense_Mutation p.A548T 0.43 tolerated_low_confidence(0.25) benign(0.002) TCGA-SX-A7SU-01 5 138266330 138266330 A G CTNNA1 Missense_Mutation p.T727A 0.44 deleterious(0) probably_damaging(0.988) TCGA-SX-A7SU-01 5 145890110 145890110 C G TCERG1 Missense_Mutation p.R1068G 0.48 deleterious(0.03) unknown(0) TCGA-SX-A7SU-01 5 176830954 176830954 A G F12 Missense_Mutation p.Y386H 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-SX-A7SU-01 5 442810 442810 C T C5orf55 Missense_Mutation p.G43E 0.39 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-SX-A7SU-01 5 74677819 74677819 T C COL4A3BP Silent p.E652E 0.43 TCGA-SX-A7SU-01 6 10935326 10935326 C T SYCP2L Silent p.P573P 0.39 TCGA-SX-A7SU-01 6 127911437 127911437 C G C6orf58 Missense_Mutation p.L294V 0.37 deleterious(0.04) possibly_damaging(0.874) TCGA-SX-A7SU-01 6 139694378 139694378 A G CITED2 Missense_Mutation p.M235T 0.47 deleterious(0) probably_damaging(0.932) TCGA-SX-A7SU-01 6 163483263 163483263 T - PACRG Frame_Shift_Del p.F126Lfs*28 0.30 TCGA-SX-A7SU-01 6 32163265 32163265 G A NOTCH4 Silent p.P1987P 0.50 TCGA-SX-A7SU-01 6 55659128 55659128 T G BMP5 Missense_Mutation p.I261L 0.43 tolerated(1) benign(0.001) TCGA-SX-A7SU-01 7 138824705 138824705 T A TTC26 Missense_Mutation p.F102I 0.21 deleterious(0) probably_damaging(0.944) TCGA-SX-A7SU-01 7 99950745 99950745 C A PILRB Intron 0.31 TCGA-SX-A7SU-01 8 8235005 8235005 G - SGK223 Frame_Shift_Del p.P305Rfs*63 0.25 TCGA-SX-A7SU-01 9 33944463 33944463 T G UBAP2 Missense_Mutation p.Q482P 0.50 tolerated(0.17) probably_damaging(0.969) TCGA-SX-A7SU-01 9 69200034 69200034 G A FOXD4L6 3'UTR 0.39 TCGA-UN-AAZ9-01 10 25464395 25464395 C T GPR158 Nonsense_Mutation p.Q16* 0.40 TCGA-UN-AAZ9-01 12 133428243 133428243 C G CHFR Missense_Mutation p.A497P 0.37 deleterious(0.01) probably_damaging(0.966) TCGA-UN-AAZ9-01 12 58006909 58006909 T A ARHGEF25 Silent p.G137G 0.45 TCGA-UN-AAZ9-01 12 6451131 6451131 G A TNFRSF1A 5'UTR 0.39 TCGA-UN-AAZ9-01 14 70171432 70171432 C G KIAA0247 Missense_Mutation p.P144R 0.88 deleterious(0.02) probably_damaging(0.966) TCGA-UN-AAZ9-01 15 101827180 101827180 T C SNRPA1 Missense_Mutation p.Y131C 0.30 deleterious(0) probably_damaging(1) TCGA-UN-AAZ9-01 16 3079566 3079566 C T CCDC64B Missense_Mutation p.D313N 0.47 tolerated(0.13) benign(0.006) TCGA-UN-AAZ9-01 16 30953551 30953551 G T FBXL19 Missense_Mutation p.W492C 0.50 deleterious(0.02) probably_damaging(0.985) TCGA-UN-AAZ9-01 17 13399694 13399694 C T HS3ST3A1 Silent p.K347K 0.42 TCGA-UN-AAZ9-01 17 1675238 1675238 G A SERPINF1 Missense_Mutation p.G171D 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-UN-AAZ9-01 17 27447674 27447674 T A MYO18A Missense_Mutation p.D563V 0.39 deleterious(0.01) probably_damaging(1) TCGA-UN-AAZ9-01 17 3119721 3119721 C T OR1A1 Silent p.D269D 0.05 TCGA-UN-AAZ9-01 17 79880337 79880337 G A MAFG 3'UTR 0.41 TCGA-UN-AAZ9-01 17 8045218 8045218 G A PER1 Nonsense_Mutation p.Q1169* 0.43 TCGA-UN-AAZ9-01 18 11884430 11884430 A G MPPE1 3'UTR 0.41 TCGA-UN-AAZ9-01 19 58439216 58439216 C A ZNF418 Missense_Mutation p.R111S 0.39 tolerated(0.38) benign(0.017) TCGA-UN-AAZ9-01 1 100856289 100856289 C T CDC14A Missense_Mutation p.S73L 0.76 deleterious(0.01) benign(0.207) TCGA-UN-AAZ9-01 1 10292439 10292439 G T KIF1B Missense_Mutation p.R18L 0.05 deleterious(0) probably_damaging(0.973) TCGA-UN-AAZ9-01 1 1663695 1663695 A G SLC35E2 3'UTR 0.24 TCGA-UN-AAZ9-01 1 214819565 214819565 C - CENPF Frame_Shift_Del p.Q2218Kfs*12 0.41 TCGA-UN-AAZ9-01 1 232944402 232944402 C G MAP10 3'UTR 0.04 TCGA-UN-AAZ9-01 1 247079601 247079601 A C AHCTF1 Missense_Mutation p.V82G 0.10 tolerated(0.13) benign(0.033) TCGA-UN-AAZ9-01 21 47565766 47565766 C G FTCD Missense_Mutation p.G355A 0.45 deleterious(0.01) probably_damaging(0.957) TCGA-UN-AAZ9-01 2 135749144 135749144 G T MAP3K19 Nonsense_Mutation p.S194* 0.37 TCGA-UN-AAZ9-01 2 179505994 179505999 TTTTTA - TTN In_Frame_Del p.K13535_K13536del 0.41 TCGA-UN-AAZ9-01 3 170244698 170244698 G T SLC7A14 Missense_Mutation p.P10T 0.29 deleterious_low_confidence(0) benign(0.068) TCGA-UN-AAZ9-01 5 111602024 111602024 A T EPB41L4A Nonsense_Mutation p.Y113* 0.27 TCGA-UN-AAZ9-01 5 114462477 114462477 G C TRIM36 Missense_Mutation p.T637S 0.36 deleterious(0) benign(0.209) TCGA-UN-AAZ9-01 6 117237249 117237249 G A RFX6 Splice_Site p.X286_splice 0.76 TCGA-UN-AAZ9-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.07 TCGA-UN-AAZ9-01 6 1611915 1611916 - G FOXC1 Frame_Shift_Ins p.Q413Afs*115 0.44 TCGA-UN-AAZ9-01 6 39873605 39873606 - CAGGG MOCS1 3'UTR 0.32 TCGA-UN-AAZ9-01 7 95034450 95034450 T C PON2 3'UTR 0.48 TCGA-UN-AAZ9-01 9 139343242 139343242 A G SEC16A Intron 0.21 TCGA-UN-AAZ9-01 X 117817167 117817167 T G DOCK11 Missense_Mutation p.I2030S 0.76 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PJ-01 10 25465009 25465009 C A GPR158 Silent p.T220T 0.06 TCGA-UZ-A9PJ-01 10 27529386 27529386 A G ACBD5 Missense_Mutation p.C15R 0.42 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-UZ-A9PJ-01 10 47088182 47088182 T A NPY4R 3'UTR 0.26 TCGA-UZ-A9PJ-01 10 61022248 61022248 G T FAM13C Silent p.A394A 0.06 TCGA-UZ-A9PJ-01 11 63886545 63886545 C T FLRT1 3'UTR 0.54 TCGA-UZ-A9PJ-01 11 9430091 9430091 A C IPO7 Silent p.P75P 0.46 TCGA-UZ-A9PJ-01 12 132195794 132195794 G A SFSWAP Missense_Mutation p.G7D 0.51 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-UZ-A9PJ-01 12 54674556 54674556 A T HNRNPA1 5'UTR 0.56 TCGA-UZ-A9PJ-01 12 59271546 59271546 A G LRIG3 Silent p.P724P 0.07 TCGA-UZ-A9PJ-01 12 7280907 7280907 A G RBP5 Missense_Mutation p.Y61H 0.50 deleterious(0.03) probably_damaging(0.997) TCGA-UZ-A9PJ-01 12 93100476 93100476 G A C12orf74 Silent p.S23S 0.49 TCGA-UZ-A9PJ-01 13 20716205 20716205 G A GJA3 Missense_Mutation p.P408L 0.49 deleterious(0) probably_damaging(0.996) TCGA-UZ-A9PJ-01 13 51961636 51961636 A G INTS6 Silent p.P260P 0.36 TCGA-UZ-A9PJ-01 14 73743189 73743189 A G NUMB 3'UTR 0.47 TCGA-UZ-A9PJ-01 14 74036423 74036423 T C ACOT2 Missense_Mutation p.V160A 0.37 tolerated(0.08) possibly_damaging(0.752) TCGA-UZ-A9PJ-01 16 31131564 31131564 A G KAT8 Missense_Mutation p.Y90C 0.43 deleterious(0) probably_damaging(1) TCGA-UZ-A9PJ-01 16 67384190 67384190 A G LRRC36 Missense_Mutation p.M192V 0.49 deleterious(0.02) benign(0.005) TCGA-UZ-A9PJ-01 16 89920723 89920723 G T SPIRE2 Silent p.P225P 0.48 TCGA-UZ-A9PJ-01 17 2594073 2594073 T C CLUH Splice_Site p.X1249_splice 0.50 TCGA-UZ-A9PJ-01 17 35969394 35969394 G A SYNRG Missense_Mutation p.R4W 0.61 deleterious_low_confidence(0) unknown(0) TCGA-UZ-A9PJ-01 17 42114777 42114777 T C LSM12 Intron 0.30 TCGA-UZ-A9PJ-01 17 45755777 45755777 A T KPNB1 Missense_Mutation p.H784L 0.67 tolerated(0.77) benign(0) TCGA-UZ-A9PJ-01 17 48626272 48626272 G A SPATA20 Missense_Mutation p.V155I 0.67 deleterious(0.01) probably_damaging(0.938) TCGA-UZ-A9PJ-01 19 18964067 18964067 G A UPF1 Missense_Mutation p.R355Q 0.50 deleterious(0) benign(0.141) TCGA-UZ-A9PJ-01 19 2340943 2340943 G A SPPL2B RNA 0.17 TCGA-UZ-A9PJ-01 19 41898792 41898792 C A EXOSC5 Missense_Mutation p.R81M 0.07 deleterious(0.01) probably_damaging(0.917) TCGA-UZ-A9PJ-01 19 45202376 45202376 A C CEACAM16 5'Flank 0.32 TCGA-UZ-A9PJ-01 19 54972799 54972799 T A LENG8 3'UTR 0.51 TCGA-UZ-A9PJ-01 19 56423298 56423298 C T NLRP13 Missense_Mutation p.A629T 0.55 tolerated(0.19) benign(0.236) TCGA-UZ-A9PJ-01 19 6309710 6309710 C G ACER1 Missense_Mutation p.R162S 0.43 deleterious(0) benign(0.027) TCGA-UZ-A9PJ-01 19 8654145 8654145 G C ADAMTS10 Missense_Mutation p.S713R 0.41 deleterious(0.01) benign(0.15) TCGA-UZ-A9PJ-01 1 107601188 107601188 A G PRMT6 3'UTR 0.53 TCGA-UZ-A9PJ-01 1 109794683 109794683 A G CELSR2 Missense_Mutation p.Q661R 0.44 deleterious(0) probably_damaging(0.995) TCGA-UZ-A9PJ-01 1 112999757 112999757 A G CTTNBP2NL Missense_Mutation p.H548R 0.47 tolerated(0.87) probably_damaging(0.994) TCGA-UZ-A9PJ-01 1 117664332 117664332 C A TRIM45 5'UTR 0.47 TCGA-UZ-A9PJ-01 1 156269315 156269315 G A VHLL 5'UTR 0.43 TCGA-UZ-A9PJ-01 1 182822459 182822459 G A DHX9 Missense_Mutation p.G128E 0.55 tolerated(0.37) benign(0.016) TCGA-UZ-A9PJ-01 1 216850790 216850798 TGGAATCAA - ESRRG In_Frame_Del p.I36_S38del 0.38 TCGA-UZ-A9PJ-01 1 25140695 25140695 T C CLIC4 Missense_Mutation p.V98A 0.46 tolerated(0.17) benign(0.016) TCGA-UZ-A9PJ-01 1 31186265 31186265 C T MATN1 3'UTR 0.33 TCGA-UZ-A9PJ-01 1 76211529 76211529 C T ACADM Missense_Mutation p.A217V 0.46 tolerated(0.11) benign(0.006) TCGA-UZ-A9PJ-01 1 94041687 94041687 C A BCAR3 Splice_Site p.X563_splice 0.04 TCGA-UZ-A9PJ-01 1 94054942 94054942 A G BCAR3 Missense_Mutation p.F174S 0.36 deleterious(0) probably_damaging(1) TCGA-UZ-A9PJ-01 20 19956369 19956369 A G RIN2 Missense_Mutation p.Y616C 0.46 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PJ-01 20 56138684 56138684 T C PCK1 Missense_Mutation p.C288R 0.32 deleterious(0) probably_damaging(1) TCGA-UZ-A9PJ-01 21 34927348 34927348 A T SON Silent p.R1937R 0.48 TCGA-UZ-A9PJ-01 21 37747537 37747537 A G MORC3 Silent p.V921V 0.48 TCGA-UZ-A9PJ-01 21 45751780 45751780 A G C21orf2 Missense_Mutation p.L164P 0.38 tolerated(0.26) possibly_damaging(0.862) TCGA-UZ-A9PJ-01 22 30234191 30234191 G A ASCC2 5'UTR 0.44 TCGA-UZ-A9PJ-01 2 162087645 162087645 A G TANK Silent p.S228S 0.50 TCGA-UZ-A9PJ-01 2 174230206 174230206 C G CDCA7 Silent p.R307R 0.47 TCGA-UZ-A9PJ-01 2 179469796 179469796 G A TTN Silent p.V18036V 0.46 TCGA-UZ-A9PJ-01 2 191745773 191745773 T C GLS 5'UTR 0.44 TCGA-UZ-A9PJ-01 2 20648694 20648694 T G RHOB 3'UTR 0.42 TCGA-UZ-A9PJ-01 2 217124358 217124358 G A MARCH4 Missense_Mutation p.R304W 0.54 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PJ-01 2 25461998 25461998 C A DNMT3A Splice_Site p.X803_splice 0.51 TCGA-UZ-A9PJ-01 2 74710189 74710189 G C CCDC142 5'Flank 0.48 TCGA-UZ-A9PJ-01 3 122168472 122168472 A T KPNA1 Missense_Mutation p.I289N 0.45 deleterious(0) probably_damaging(1) TCGA-UZ-A9PJ-01 3 139071513 139071516 ATAG - MRPS22 Frame_Shift_Del p.D254Nfs*22 0.45 TCGA-UZ-A9PJ-01 3 152882446 152882446 T A RAP2B 3'UTR 0.44 TCGA-UZ-A9PJ-01 3 48698992 48699005 CGCCCGGCCTCGCC A CELSR3 Frame_Shift_Del p.G355Sfs*2 0.51 TCGA-UZ-A9PJ-01 3 48699005 48699005 C A CELSR3 Missense_Mutation p.G355C 0.43 deleterious(0) probably_damaging(1) TCGA-UZ-A9PJ-01 3 51431303 51431303 G T RBM15B Missense_Mutation p.V825F 0.47 deleterious(0) probably_damaging(0.995) TCGA-UZ-A9PJ-01 3 52661338 52661338 T - PBRM1 Frame_Shift_Del p.S498Afs*2 0.32 TCGA-UZ-A9PJ-01 3 55768837 55768837 G A ERC2 Missense_Mutation p.R892W 0.40 deleterious(0) probably_damaging(1) TCGA-UZ-A9PJ-01 4 2087397 2087397 T G POLN Missense_Mutation p.K714Q 0.42 deleterious(0.01) probably_damaging(0.97) TCGA-UZ-A9PJ-01 4 8469719 8469719 A C TRMT44 Missense_Mutation p.K525Q 0.50 tolerated(0.5) benign(0.007) TCGA-UZ-A9PJ-01 5 135561852 135561852 A G TRPC7 Missense_Mutation p.L711P 0.47 deleterious(0) possibly_damaging(0.759) TCGA-UZ-A9PJ-01 5 140071105 140071105 G A HARS2 5'UTR 0.12 TCGA-UZ-A9PJ-01 5 169026069 169026069 T G SPDL1 Silent p.L410L 0.49 TCGA-UZ-A9PJ-01 5 179132798 179132798 T G CANX Missense_Mutation p.I39S 0.39 tolerated(0.75) benign(0.003) TCGA-UZ-A9PJ-01 5 179758509 179758509 G A GFPT2 Silent p.L129L 0.47 TCGA-UZ-A9PJ-01 5 60455870 60455870 T C SMIM15 Silent p.K43K 0.44 TCGA-UZ-A9PJ-01 5 7867537 7867537 A G FASTKD3 Silent p.I220I 0.51 TCGA-UZ-A9PJ-01 6 144185654 144185655 TG - ZC2HC1B 5'UTR 0.32 TCGA-UZ-A9PJ-01 6 160467612 160467612 T C IGF2R Silent p.N662N 0.38 TCGA-UZ-A9PJ-01 6 168226643 168226643 C - MLLT4 5'Flank 0.26 TCGA-UZ-A9PJ-01 6 170112545 170112545 A T PHF10 Missense_Mutation p.D298E 0.50 tolerated(0.43) benign(0.003) TCGA-UZ-A9PJ-01 6 3119054 3119059 CACGGG - BPHL In_Frame_Del p.R28_A29del 0.33 TCGA-UZ-A9PJ-01 6 43275411 43275411 A G CRIP3 Silent p.P89P 0.46 TCGA-UZ-A9PJ-01 7 116417457 116417457 G A MET Missense_Mutation p.V1110I 0.35 deleterious(0) probably_damaging(0.984) TCGA-UZ-A9PJ-01 7 135255937 135255937 T G NUP205 Missense_Mutation p.L38R 0.31 tolerated(0.51) benign(0.003) TCGA-UZ-A9PJ-01 7 73246581 73246581 G A CLDN4 3'UTR 0.18 TCGA-UZ-A9PJ-01 8 101299802 101299803 - T RNF19A Frame_Shift_Ins p.Y201Ifs*7 0.30 TCGA-UZ-A9PJ-01 8 104924308 104924308 G A RIMS2 Missense_Mutation p.D574N 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UZ-A9PJ-01 8 42218840 42218840 T C POLB Missense_Mutation p.V193A 0.39 tolerated(0.09) benign(0.012) TCGA-UZ-A9PJ-01 8 77775575 77775575 G A ZFHX4 Missense_Mutation p.A3209T 0.35 benign(0.002) TCGA-UZ-A9PJ-01 8 99118223 99118223 T C HRSP12 Missense_Mutation p.T80A 0.59 deleterious(0.01) benign(0.253) TCGA-UZ-A9PJ-01 9 102691077 102691077 C A STX17 Silent p.I47I 0.53 TCGA-UZ-A9PJ-01 9 116359293 116359293 C T RGS3 3'UTR 0.36 TCGA-UZ-A9PJ-01 9 139730244 139730244 C T RABL6 Silent p.A253A 0.45 TCGA-UZ-A9PJ-01 9 95738496 95738496 C T FGD3 5'UTR 0.48 TCGA-UZ-A9PJ-01 X 151909447 151909447 G T CSAG1 3'UTR 0.97 TCGA-UZ-A9PK-01 10 101605502 101605502 T C ABCC2 Missense_Mutation p.L1370P 0.29 deleterious(0) probably_damaging(1) TCGA-UZ-A9PK-01 10 103360511 103360512 - A DPCD Frame_Shift_Ins p.S56Kfs*12 0.23 TCGA-UZ-A9PK-01 10 115636691 115636691 T - NHLRC2 Frame_Shift_Del p.L249Wfs*36 0.19 TCGA-UZ-A9PK-01 10 125521473 125521473 G A CPXM2 Silent p.D564D 0.33 TCGA-UZ-A9PK-01 10 17107509 17107509 G C CUBN Missense_Mutation p.T1046R 0.37 tolerated(0.06) benign(0.012) TCGA-UZ-A9PK-01 10 69832644 69832644 T C HERC4 Silent p.K74K 0.27 TCGA-UZ-A9PK-01 10 7285579 7285579 A G SFMBT2 Missense_Mutation p.L354S 0.36 tolerated(0.56) benign(0.39) TCGA-UZ-A9PK-01 12 10168376 10168376 G T CLEC12B Intron 0.33 TCGA-UZ-A9PK-01 12 130388137 130388137 G A TMEM132D 5'UTR 0.42 TCGA-UZ-A9PK-01 12 132414233 132414233 A T PUS1 5'UTR 0.33 TCGA-UZ-A9PK-01 12 968630 968630 G T WNK1 Missense_Mutation p.M540I 0.39 deleterious(0) unknown(0) TCGA-UZ-A9PK-01 13 115091926 115091926 T A CHAMP1 3'UTR 0.32 TCGA-UZ-A9PK-01 13 20277120 20277120 T C PSPC1 3'UTR 0.32 TCGA-UZ-A9PK-01 13 25378553 25378553 T A RNF17 Missense_Mutation p.F693I 0.36 deleterious(0) possibly_damaging(0.579) TCGA-UZ-A9PK-01 13 76427487 76427487 C T LMO7 Missense_Mutation p.P1309S 0.34 tolerated(0.12) benign(0.031) TCGA-UZ-A9PK-01 14 64066099 64066099 A G WDR89 Missense_Mutation p.S188P 0.25 deleterious(0) probably_damaging(0.992) TCGA-UZ-A9PK-01 14 72196928 72196928 G T SIPA1L1 Missense_Mutation p.D1612Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PK-01 14 90769166 90769166 T - NRDE2 Frame_Shift_Del p.I437Ffs*9 0.25 TCGA-UZ-A9PK-01 15 20644801 20644801 G C HERC2P3 RNA 0.20 TCGA-UZ-A9PK-01 15 85165516 85165516 T C ZSCAN2 3'UTR 0.33 TCGA-UZ-A9PK-01 16 15729652 15729652 C T KIAA0430 Missense_Mutation p.S231N 0.51 deleterious_low_confidence(0.01) benign(0.35) TCGA-UZ-A9PK-01 16 16215909 16215909 C T ABCC1 Silent p.N1156N 0.54 TCGA-UZ-A9PK-01 16 48395959 48395959 G A SIAH1 Silent p.S158S 0.24 TCGA-UZ-A9PK-01 16 67702481 67702482 - T C16orf86 Frame_Shift_Ins p.L312Afs*21 0.30 TCGA-UZ-A9PK-01 16 84188368 84188368 T C DNAAF1 Missense_Mutation p.L180P 0.24 deleterious(0) probably_damaging(0.992) TCGA-UZ-A9PK-01 17 10222337 10222337 T C MYH13 Missense_Mutation p.K1170E 0.55 deleterious(0.01) probably_damaging(0.995) TCGA-UZ-A9PK-01 17 11845791 11845791 C T DNAH9 Missense_Mutation p.L4278F 0.32 probably_damaging(0.998) TCGA-UZ-A9PK-01 17 43226498 43226498 A G HEXIM1 5'UTR 0.55 TCGA-UZ-A9PK-01 17 57289014 57289014 G A SMG8 Silent p.V534V 0.50 TCGA-UZ-A9PK-01 17 6941759 6941759 T C SLC16A13 Missense_Mutation p.L211P 0.55 deleterious(0.01) benign(0.211) TCGA-UZ-A9PK-01 17 72767943 72767946 ACTC - NAT9 Frame_Shift_Del p.E181Pfs*171 0.49 TCGA-UZ-A9PK-01 18 56246259 56246259 A G ALPK2 Silent p.T583T 0.35 TCGA-UZ-A9PK-01 18 56246453 56246453 T C ALPK2 Missense_Mutation p.R519G 0.25 deleterious(0.02) benign(0.063) TCGA-UZ-A9PK-01 19 11113759 11113759 G T SMARCA4 Nonsense_Mutation p.E623* 0.41 TCGA-UZ-A9PK-01 19 11217362 11217363 TG - LDLR Frame_Shift_Del p.V273Dfs*27 0.26 TCGA-UZ-A9PK-01 19 11577519 11577519 A G ELAVL3 Missense_Mutation p.Y45H 0.31 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PK-01 19 17326154 17326154 G A USE1 5'Flank 0.31 TCGA-UZ-A9PK-01 19 36205913 36205913 G A ZBTB32 Missense_Mutation p.E129K 0.10 tolerated(0.14) benign(0.292) TCGA-UZ-A9PK-01 19 37006374 37006374 A G ZNF260 5'UTR 0.30 TCGA-UZ-A9PK-01 19 42906943 42906943 A G LIPE Missense_Mutation p.L928P 0.38 tolerated(0.14) benign(0.003) TCGA-UZ-A9PK-01 19 4446696 4446696 C T UBXN6 Missense_Mutation p.V241M 0.40 deleterious(0.01) probably_damaging(0.959) TCGA-UZ-A9PK-01 19 464231 464231 A G ODF3L2 Silent p.P161P 0.20 TCGA-UZ-A9PK-01 19 49376934 49376934 A T PPP1R15A Silent p.I148I 0.35 TCGA-UZ-A9PK-01 19 54379567 54379567 A T MYADM 3'UTR 0.07 TCGA-UZ-A9PK-01 19 55048239 55048239 G T KIR3DX1 Missense_Mutation p.G269V 0.37 tolerated(0.21) possibly_damaging(0.836) TCGA-UZ-A9PK-01 19 56188401 56188401 T A EPN1 5'UTR 0.32 TCGA-UZ-A9PK-01 19 9964735 9964735 A C OLFM2 3'UTR 0.40 TCGA-UZ-A9PK-01 19 9964736 9964736 G A OLFM2 3'UTR 0.40 TCGA-UZ-A9PK-01 1 149858172 149858172 A T HIST2H2BE Missense_Mutation p.S7T 0.37 deleterious_low_confidence(0.03) unknown(0) TCGA-UZ-A9PK-01 1 150482014 150482014 G T ECM1 Silent p.T26T 0.36 TCGA-UZ-A9PK-01 1 155104053 155104053 T C EFNA1 Missense_Mutation p.F111L 0.34 deleterious(0) probably_damaging(0.913) TCGA-UZ-A9PK-01 1 224377627 224377627 T G DEGS1 Missense_Mutation p.I144S 0.38 deleterious(0.01) probably_damaging(0.934) TCGA-UZ-A9PK-01 1 245133286 245133287 - G RP11-156E8.1 3'UTR 0.21 TCGA-UZ-A9PK-01 1 47395647 47395647 G A CYP4A11 3'UTR 0.21 TCGA-UZ-A9PK-01 1 52825767 52825767 C T CC2D1B Missense_Mutation p.A248T 0.32 tolerated(0.17) benign(0.005) TCGA-UZ-A9PK-01 1 74905231 74905231 G A TNNI3K Missense_Mutation p.A747T 0.36 deleterious(0) possibly_damaging(0.757) TCGA-UZ-A9PK-01 20 30803187 30803187 A G POFUT1 Missense_Mutation p.K121R 0.39 tolerated(0.24) benign(0.011) TCGA-UZ-A9PK-01 22 29885853 29885858 GAAGAA - NEFH In_Frame_Del p.E742_E743del 0.07 TCGA-UZ-A9PK-01 22 41542756 41542756 T C EP300 Silent p.P689P 0.33 TCGA-UZ-A9PK-01 2 176972327 176972327 G A HOXD11 Missense_Mutation p.G82S 0.05 tolerated_low_confidence(0.81) benign(0.009) TCGA-UZ-A9PK-01 2 70074701 70074701 G A GMCL1 Missense_Mutation p.G262D 0.50 tolerated(0.13) benign(0.005) TCGA-UZ-A9PK-01 2 86352186 86352186 T C PTCD3 Missense_Mutation p.M262T 0.33 deleterious(0) possibly_damaging(0.597) TCGA-UZ-A9PK-01 2 88478463 88478463 T A THNSL2 Missense_Mutation p.S245T 0.54 tolerated(0.11) benign(0.033) TCGA-UZ-A9PK-01 3 169539716 169539716 A T LRRIQ4 Nonsense_Mutation p.K3* 0.55 TCGA-UZ-A9PK-01 3 37107344 37107344 C A LRRFIP2 Missense_Mutation p.Q552H 0.46 deleterious(0) probably_damaging(0.99) TCGA-UZ-A9PK-01 3 38163861 38163861 A G DLEC1 Silent p.Q1742Q 0.48 TCGA-UZ-A9PK-01 3 39229398 39229398 C A XIRP1 Missense_Mutation p.R513S 0.27 deleterious(0) possibly_damaging(0.72) TCGA-UZ-A9PK-01 3 48507663 48507663 A T TREX1 5'UTR 0.45 TCGA-UZ-A9PK-01 3 52439133 52439133 G T BAP1 Missense_Mutation p.P370H 0.26 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-UZ-A9PK-01 4 1019217 1019217 G T FGFRL1 3'UTR 0.41 TCGA-UZ-A9PK-01 4 108999439 108999439 C T LEF1 Silent p.A315A 0.41 TCGA-UZ-A9PK-01 4 113066874 113066874 G C C4orf32 Silent p.P46P 0.50 TCGA-UZ-A9PK-01 4 115997318 115997318 G A NDST4 Missense_Mutation p.S292L 0.34 deleterious(0) benign(0.092) TCGA-UZ-A9PK-01 4 76840899 76840899 G A NAAA Intron 0.55 TCGA-UZ-A9PK-01 4 77290666 77290666 T C CCDC158 Silent p.E420E 0.34 TCGA-UZ-A9PK-01 4 79831875 79831875 A G BMP2K Missense_Mutation p.K725R 0.03 tolerated_low_confidence(0.31) unknown(0) TCGA-UZ-A9PK-01 4 88312033 88312033 C T HSD17B11 Missense_Mutation p.V64I 0.38 deleterious(0.03) benign(0.262) TCGA-UZ-A9PK-01 4 959714 959715 - C DGKQ Splice_Site p.X527_splice 0.24 TCGA-UZ-A9PK-01 5 134679151 134679151 C G C5orf66 Missense_Mutation p.Q145E 0.40 benign(0.095) TCGA-UZ-A9PK-01 5 149375126 149375127 - T TIGD6 Frame_Shift_Ins p.N262Kfs*2 0.24 TCGA-UZ-A9PK-01 5 156592638 156592638 C G FAM71B Missense_Mutation p.S181T 0.34 deleterious(0.03) probably_damaging(0.968) TCGA-UZ-A9PK-01 5 156738675 156738675 G T CYFIP2 Missense_Mutation p.W306C 0.30 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PK-01 5 80738511 80738511 A G SSBP2 Silent p.T270T 0.38 TCGA-UZ-A9PK-01 6 108985926 108985926 T C FOXO3 Silent p.S630S 0.29 TCGA-UZ-A9PK-01 6 154751655 154751655 G A CNKSR3 Missense_Mutation p.A207V 0.31 deleterious(0) possibly_damaging(0.656) TCGA-UZ-A9PK-01 6 159653325 159653325 G A FNDC1 Missense_Mutation p.R594K 0.34 tolerated_low_confidence(1) unknown(0) TCGA-UZ-A9PK-01 6 24205500 24205500 C - DCDC2 Intron 0.27 TCGA-UZ-A9PK-01 6 40399746 40399746 C T LRFN2 Silent p.T369T 0.35 TCGA-UZ-A9PK-01 6 80223369 80223369 G A LCA5 Missense_Mutation p.R94W 0.31 tolerated(0.08) benign(0.011) TCGA-UZ-A9PK-01 8 100865879 100865879 A G VPS13B Missense_Mutation p.E3446G 0.29 deleterious(0.04) benign(0.403) TCGA-UZ-A9PK-01 8 101965157 101965157 G A YWHAZ 5'UTR 0.34 TCGA-UZ-A9PK-01 8 21560336 21560336 G C GFRA2 Missense_Mutation p.T400S 0.36 tolerated(0.99) benign(0.002) TCGA-UZ-A9PK-01 8 23306313 23306313 A - ENTPD4 Frame_Shift_Del p.S50Lfs*4 0.25 TCGA-UZ-A9PK-01 8 41551435 41551438 GCGC - ANK1 Frame_Shift_Del p.R1212Cfs*17 0.27 TCGA-UZ-A9PK-01 8 90965471 90965471 C T NBN Splice_Site p.X615_splice 0.27 TCGA-UZ-A9PK-01 9 104335351 104335351 C G GRIN3A 3'UTR 0.24 TCGA-UZ-A9PK-01 9 117803252 117803252 T C TNC Missense_Mutation p.E1787G 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-UZ-A9PK-01 9 214701 214701 G T C9orf66 Nonsense_Mutation p.Y232* 0.41 TCGA-UZ-A9PK-01 9 2718860 2718860 A G KCNV2 Missense_Mutation p.Q374R 0.37 tolerated(0.58) possibly_damaging(0.877) TCGA-UZ-A9PK-01 9 27524419 27524419 G T IFNK Missense_Mutation p.D29Y 0.40 deleterious(0.01) benign(0.405) TCGA-UZ-A9PK-01 9 34343386 34343386 T C NUDT2 Missense_Mutation p.M131T 0.24 deleterious(0.03) probably_damaging(0.971) TCGA-UZ-A9PK-01 9 34371369 34371369 A C KIAA1161 Missense_Mutation p.W491G 0.39 deleterious(0) probably_damaging(1) TCGA-UZ-A9PK-01 9 990923 990923 C G DMRT3 Nonsense_Mutation p.S446* 0.34 TCGA-UZ-A9PK-01 9 99246828 99246828 A G HABP4 Silent p.R304R 0.32 TCGA-UZ-A9PK-01 X 47103934 47103934 G A USP11 Missense_Mutation p.D653N 0.68 tolerated(0.25) possibly_damaging(0.509) TCGA-UZ-A9PL-01 10 102673155 102673155 C T FAM178A Intron 0.36 TCGA-UZ-A9PL-01 10 103190124 103190124 G A BTRC Nonsense_Mutation p.W24* 0.40 TCGA-UZ-A9PL-01 10 50723698 50723698 A G ERCC6-PGBD3 Missense_Mutation p.L956S 0.49 tolerated_low_confidence(0.45) unknown(0) TCGA-UZ-A9PL-01 10 62670674 62670674 A G RHOBTB1 Silent p.H89H 0.39 TCGA-UZ-A9PL-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.24 TCGA-UZ-A9PL-01 10 91065753 91065753 C T IFIT2 Missense_Mutation p.R14W 0.39 deleterious(0.03) possibly_damaging(0.891) TCGA-UZ-A9PL-01 11 3109447 3109447 G T OSBPL5 Missense_Mutation p.H876Q 0.08 deleterious(0.01) benign(0.078) TCGA-UZ-A9PL-01 11 47305994 47305994 C A MADD Missense_Mutation p.Q679K 0.55 tolerated_low_confidence(0.28) benign(0.001) TCGA-UZ-A9PL-01 12 20854365 20854365 G - SLCO1C1 Frame_Shift_Del p.G82Efs*13 0.34 TCGA-UZ-A9PL-01 12 53683280 53683280 G A ESPL1 Missense_Mutation p.R1672H 0.30 tolerated(0.28) benign(0.022) TCGA-UZ-A9PL-01 12 53877202 53877202 T C MAP3K12 Missense_Mutation p.H515R 0.29 tolerated(0.37) benign(0.039) TCGA-UZ-A9PL-01 12 59282143 59282149 ATCAGGG - LRIG3 Frame_Shift_Del p.S303Rfs*14 0.27 TCGA-UZ-A9PL-01 12 74931836 74931836 A C ATXN7L3B 5'UTR 0.38 TCGA-UZ-A9PL-01 12 80648329 80648329 T C OTOGL Missense_Mutation p.C465R 0.53 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PL-01 13 45594477 45594477 G - GPALPP1 Frame_Shift_Del p.A240Qfs*45 0.28 TCGA-UZ-A9PL-01 13 96242581 96242581 C - DZIP1 Frame_Shift_Del p.E599Nfs*35 0.32 TCGA-UZ-A9PL-01 14 19378138 19378138 C T OR11H12 Missense_Mutation p.P182L 0.17 deleterious(0.02) benign(0.291) TCGA-UZ-A9PL-01 14 64634024 64634024 T A SYNE2 Missense_Mutation p.L5560H 0.45 benign(0.191) TCGA-UZ-A9PL-01 14 70236065 70236066 - T SRSF5 Intron 0.34 TCGA-UZ-A9PL-01 14 78028818 78028818 C G SPTLC2 Silent p.L257L 0.49 TCGA-UZ-A9PL-01 14 86089469 86089469 G - FLRT2 Frame_Shift_Del p.G538Afs*9 0.26 TCGA-UZ-A9PL-01 15 41709346 41709346 G A RTF1 Silent p.A11A 0.05 TCGA-UZ-A9PL-01 15 42107832 42107839 AAATCATC - MAPKBP1 Frame_Shift_Del p.K449Ifs*21 0.38 TCGA-UZ-A9PL-01 15 43902548 43902548 G A STRC Nonsense_Mutation p.R1154* 0.30 TCGA-UZ-A9PL-01 15 44955757 44955757 A G SPG11 Missense_Mutation p.L30S 0.50 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-UZ-A9PL-01 15 63044513 63044513 G A TLN2 Missense_Mutation p.E1407K 0.35 deleterious(0.01) possibly_damaging(0.488) TCGA-UZ-A9PL-01 15 92987941 92987941 G A ST8SIA2 Silent p.S208S 0.47 TCGA-UZ-A9PL-01 16 20476871 20476871 G T ACSM2A Missense_Mutation p.W70C 0.41 deleterious(0) probably_damaging(1) TCGA-UZ-A9PL-01 16 30543945 30543945 C G ZNF747 3'UTR 0.50 TCGA-UZ-A9PL-01 16 68405808 68405808 G A SMPD3 Missense_Mutation p.R93W 0.41 deleterious(0.01) possibly_damaging(0.886) TCGA-UZ-A9PL-01 16 74505131 74505131 C T GLG1 Silent p.Q723Q 0.46 TCGA-UZ-A9PL-01 17 42828466 42828466 G A DBF4B Missense_Mutation p.G565R 0.37 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-UZ-A9PL-01 17 48538115 48538115 T G ACSF2 Missense_Mutation p.L69R 0.66 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PL-01 17 5461934 5461934 C T NLRP1 Silent p.L694L 0.25 TCGA-UZ-A9PL-01 18 72180835 72180835 A G CNDP2 Missense_Mutation p.I262V 0.34 tolerated(0.43) benign(0.004) TCGA-UZ-A9PL-01 19 10940955 10940955 C A DNM2 Missense_Mutation p.P815H 0.47 deleterious_low_confidence(0) possibly_damaging(0.456) TCGA-UZ-A9PL-01 19 12902504 12902504 G A JUNB 5'UTR 0.55 TCGA-UZ-A9PL-01 19 2877876 2877876 G C ZNF556 Missense_Mutation p.R307T 0.43 deleterious(0) probably_damaging(0.986) TCGA-UZ-A9PL-01 19 42817621 42817621 C T TMEM145 Silent p.Y31Y 0.39 TCGA-UZ-A9PL-01 19 45889399 45889399 T C PPP1R13L Missense_Mutation p.K619E 0.52 deleterious(0.04) benign(0.101) TCGA-UZ-A9PL-01 1 156811515 156811515 G A INSRR Missense_Mutation p.R1157C 0.24 deleterious(0) probably_damaging(1) TCGA-UZ-A9PL-01 1 196887456 196887456 G A CFHR4 Missense_Mutation p.G552R 0.42 deleterious(0.01) possibly_damaging(0.687) TCGA-UZ-A9PL-01 1 204199631 204199631 G T PLEKHA6 Missense_Mutation p.H831Q 0.48 deleterious(0) benign(0.273) TCGA-UZ-A9PL-01 1 32265460 32265460 C T SPOCD1 Missense_Mutation p.G578D 0.44 tolerated(0.13) possibly_damaging(0.811) TCGA-UZ-A9PL-01 1 35656516 35656516 A G SFPQ Silent p.F366F 0.47 TCGA-UZ-A9PL-01 1 3775309 3775309 C A DFFB Missense_Mutation p.L48M 0.58 deleterious(0.02) possibly_damaging(0.655) TCGA-UZ-A9PL-01 1 44457459 44457459 T G CCDC24 Intron 0.31 TCGA-UZ-A9PL-01 1 54871734 54871734 T C SSBP3 5'UTR 0.33 TCGA-UZ-A9PL-01 1 54871735 54871735 A G SSBP3 5'UTR 0.33 TCGA-UZ-A9PL-01 1 90400895 90400895 T G LRRC8D Missense_Mutation p.H756Q 0.44 deleterious(0.01) benign(0.035) TCGA-UZ-A9PL-01 20 2635810 2635810 T A NOP56 Intron 0.58 TCGA-UZ-A9PL-01 20 33298138 33298138 C A TP53INP2 3'UTR 0.28 TCGA-UZ-A9PL-01 20 40086018 40086018 A T CHD6 Nonsense_Mutation p.Y905* 0.31 TCGA-UZ-A9PL-01 21 28217050 28217050 C T ADAMTS1 Missense_Mutation p.R75H 0.40 tolerated(0.58) benign(0.011) TCGA-UZ-A9PL-01 22 17600499 17600499 G T CECR6 Missense_Mutation p.L507I 0.41 tolerated(0.06) probably_damaging(0.953) TCGA-UZ-A9PL-01 2 175260412 175260412 C T CIR1 5'UTR 0.42 TCGA-UZ-A9PL-01 2 179474203 179474203 A T TTN Silent p.T17278T 0.51 TCGA-UZ-A9PL-01 2 179611761 179611761 T A TTN Intron 0.40 TCGA-UZ-A9PL-01 2 208420472 208420472 A G CREB1 Missense_Mutation p.Q38R 0.11 deleterious(0.03) benign(0.37) TCGA-UZ-A9PL-01 2 220099756 220099756 A G ANKZF1 Silent p.S471S 0.52 TCGA-UZ-A9PL-01 2 220336993 220336993 G A SPEG Missense_Mutation p.V1294M 0.46 probably_damaging(0.993) TCGA-UZ-A9PL-01 2 224463553 224463553 C T SCG2 Missense_Mutation p.D150N 0.35 deleterious(0) possibly_damaging(0.868) TCGA-UZ-A9PL-01 2 44105225 44105225 T C ABCG8 3'UTR 0.36 TCGA-UZ-A9PL-01 2 63272705 63272705 C T EHBP1 3'UTR 0.39 TCGA-UZ-A9PL-01 2 97532110 97532110 C T SEMA4C Silent p.L56L 0.42 TCGA-UZ-A9PL-01 3 124458913 124458920 CTCACGTG T UMPS Frame_Shift_Del p.A342Vfs*8 0.41 TCGA-UZ-A9PL-01 3 14803122 14803122 G A C3orf20 Missense_Mutation p.S832N 0.42 tolerated(0.19) benign(0.003) TCGA-UZ-A9PL-01 3 14803123 14803123 G C C3orf20 Splice_Site p.X832_splice 0.43 TCGA-UZ-A9PL-01 3 48637112 48637118 CAGATCT - UQCRC1 Frame_Shift_Del p.E443Afs*70 0.32 TCGA-UZ-A9PL-01 3 67053891 67053891 T C KBTBD8 Missense_Mutation p.L167P 0.47 deleterious(0) probably_damaging(1) TCGA-UZ-A9PL-01 4 36345277 36345277 T G DTHD1 Missense_Mutation p.F726C 0.52 deleterious(0) possibly_damaging(0.827) TCGA-UZ-A9PL-01 4 47593159 47593159 A G ATP10D Missense_Mutation p.K1348E 0.56 tolerated(0.06) possibly_damaging(0.643) TCGA-UZ-A9PL-01 4 62936619 62936619 G T LPHN3 Missense_Mutation p.S1468I 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UZ-A9PL-01 5 137295872 137295873 - T FAM13B Frame_Shift_Ins p.L426Ifs*9 0.30 TCGA-UZ-A9PL-01 5 140909206 140909206 C G DIAPH1 Missense_Mutation p.E880D 0.40 possibly_damaging(0.551) TCGA-UZ-A9PL-01 5 41201803 41201803 C A C6 Missense_Mutation p.D53Y 0.45 deleterious(0.01) benign(0.202) TCGA-UZ-A9PL-01 5 42801208 42801208 T C SEPP1 Missense_Mutation p.R254G 0.31 tolerated(0.13) benign(0.426) TCGA-UZ-A9PL-01 5 45462104 45462104 G T HCN1 Missense_Mutation p.F285L 0.46 tolerated(0.12) possibly_damaging(0.906) TCGA-UZ-A9PL-01 5 70793235 70793235 A G BDP1 Silent p.S646S 0.47 TCGA-UZ-A9PL-01 5 77511925 77511925 A G AP3B1 Missense_Mutation p.M247T 0.36 deleterious(0) benign(0.18) TCGA-UZ-A9PL-01 5 90016841 90016841 A G GPR98 Missense_Mutation p.Q3238R 0.51 benign(0.018) TCGA-UZ-A9PL-01 6 102074289 102074289 C T GRIK2 Silent p.I106I 0.52 TCGA-UZ-A9PL-01 6 135784363 135784363 A G AHI1 Silent p.H277H 0.46 TCGA-UZ-A9PL-01 6 150001589 150001589 C A LATS1 Missense_Mutation p.G672V 0.49 deleterious(0) possibly_damaging(0.864) TCGA-UZ-A9PL-01 6 153332882 153332882 G A RGS17 Nonsense_Mutation p.R154* 0.47 TCGA-UZ-A9PL-01 6 35443200 35443200 C T TEAD3 Silent p.E369E 0.68 TCGA-UZ-A9PL-01 6 42713428 42713428 G T TBCC Silent p.R128R 0.45 TCGA-UZ-A9PL-01 6 91296573 91296573 G C MAP3K7 Silent p.S10S 0.47 TCGA-UZ-A9PL-01 6 94066709 94066709 T C EPHA7 Silent p.E350E 0.48 TCGA-UZ-A9PL-01 7 141721461 141721461 T G MGAM Missense_Mutation p.S212A 0.56 tolerated(0.14) benign(0.001) TCGA-UZ-A9PL-01 7 150095223 150095223 G A ZNF775 3'UTR 0.60 TCGA-UZ-A9PL-01 7 25266528 25266528 C T NPVF Missense_Mutation p.A86T 0.45 tolerated(0.15) benign(0.006) TCGA-UZ-A9PL-01 7 48313241 48313241 G A ABCA13 Silent p.E1326E 0.38 TCGA-UZ-A9PL-01 7 48313243 48313243 T C ABCA13 Missense_Mutation p.L1327P 0.38 probably_damaging(0.929) TCGA-UZ-A9PL-01 8 125499771 125499771 G C RNF139 Missense_Mutation p.R627S 0.47 tolerated(0.84) benign(0.001) TCGA-UZ-A9PL-01 9 114338729 114338729 C T PTGR1 Intron 0.38 TCGA-UZ-A9PL-01 9 116185621 116185621 C T C9orf43 Silent p.L167L 0.42 TCGA-UZ-A9PL-01 9 117666251 117666257 TCAAGAG - TNFSF8 Frame_Shift_Del p.P220Rfs*69 0.44 TCGA-UZ-A9PL-01 9 139368591 139368591 G T SEC16A Nonsense_Mutation p.Y1159* 0.55 TCGA-UZ-A9PL-01 9 140176997 140176997 C T TOR4A 3'UTR 0.47 TCGA-UZ-A9PL-01 9 97847743 97847743 G T C9orf3 Intron 0.09 TCGA-UZ-A9PM-01 10 101480822 101480822 G C COX15 Missense_Mutation p.P252A 0.13 tolerated(0.5) benign(0.002) TCGA-UZ-A9PM-01 10 61956291 61956291 A G ANK3 Silent p.A594A 0.21 TCGA-UZ-A9PM-01 10 97917398 97917398 A G ZNF518A RNA 0.21 TCGA-UZ-A9PM-01 11 111614145 111614145 A C PPP2R1B Missense_Mutation p.N503K 0.06 tolerated(0.29) benign(0.005) TCGA-UZ-A9PM-01 11 18591925 18591925 C A UEVLD Splice_Site p.X65_splice 0.05 TCGA-UZ-A9PM-01 11 75160942 75160942 C A GDPD5 Silent p.L154L 0.20 TCGA-UZ-A9PM-01 12 110403363 110403363 A G GIT2 Silent p.L262L 0.04 TCGA-UZ-A9PM-01 12 12279762 12279762 A G LRP6 Missense_Mutation p.F1392S 0.07 deleterious(0.01) probably_damaging(0.99) TCGA-UZ-A9PM-01 12 12510299 12510299 C A LOH12CR1 5'UTR 0.24 TCGA-UZ-A9PM-01 12 56975290 56975290 A G RBMS2 Missense_Mutation p.M244V 0.19 tolerated(0.62) benign(0.001) TCGA-UZ-A9PM-01 12 70072597 70072597 G A BEST3 Silent p.I186I 0.09 TCGA-UZ-A9PM-01 13 100637680 100637680 A G ZIC2 Missense_Mutation p.Q448R 0.15 tolerated(0.21) benign(0.033) TCGA-UZ-A9PM-01 13 50587613 50587613 A G TRIM13 3'Flank 0.19 TCGA-UZ-A9PM-01 14 24777122 24777122 T C NOP9 3'UTR 0.18 TCGA-UZ-A9PM-01 15 73562439 73562439 G C NEO1 Missense_Mutation p.Q861H 0.17 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PM-01 16 19576253 19576253 A G C16orf62 Missense_Mutation p.H122R 0.18 deleterious(0) probably_damaging(0.985) TCGA-UZ-A9PM-01 16 31424561 31424561 C A ITGAD Missense_Mutation p.Q664K 0.11 tolerated(0.24) benign(0.016) TCGA-UZ-A9PM-01 16 49764694 49764694 G A ZNF423 Missense_Mutation p.R89C 0.27 deleterious(0.01) possibly_damaging(0.766) TCGA-UZ-A9PM-01 16 57499934 57499934 G C POLR2C Splice_Site p.X69_splice 0.11 TCGA-UZ-A9PM-01 17 42744973 42744973 T C C17orf104 Missense_Mutation p.L565P 0.42 deleterious(0) probably_damaging(0.937) TCGA-UZ-A9PM-01 17 81006700 81006700 A T B3GNTL1 Intron 0.14 TCGA-UZ-A9PM-01 17 81006701 81006701 C A B3GNTL1 Intron 0.14 TCGA-UZ-A9PM-01 18 42643077 42643077 G - SETBP1 Frame_Shift_Del p.E1403Rfs*28 0.13 TCGA-UZ-A9PM-01 19 1106398 1106398 G T GPX4 Splice_Site p.X168_splice 0.25 TCGA-UZ-A9PM-01 19 21607521 21607521 G T ZNF493 Missense_Mutation p.C687F 0.14 deleterious(0) probably_damaging(0.986) TCGA-UZ-A9PM-01 19 45867362 45867362 G A ERCC2 Silent p.D277D 0.19 TCGA-UZ-A9PM-01 19 46273650 46273650 G A DMPK 3'UTR 0.14 TCGA-UZ-A9PM-01 19 9075997 9075997 G A MUC16 Missense_Mutation p.L3817F 0.17 unknown(0) TCGA-UZ-A9PM-01 1 11810188 11810188 A C AGTRAP Missense_Mutation p.E140A 0.19 deleterious(0.04) benign(0.032) TCGA-UZ-A9PM-01 1 11985315 11985315 G A KIAA2013 Missense_Mutation p.A327V 0.17 tolerated(1) benign(0.02) TCGA-UZ-A9PM-01 1 153410759 153410759 A T S100A7L2 Missense_Mutation p.M27K 0.21 deleterious(0) benign(0.014) TCGA-UZ-A9PM-01 1 158152692 158152692 G A CD1D Missense_Mutation p.R211H 0.15 deleterious(0.01) benign(0.424) TCGA-UZ-A9PM-01 1 16632303 16632303 G C FBXO42 Missense_Mutation p.S121W 0.15 deleterious(0) probably_damaging(0.992) TCGA-UZ-A9PM-01 1 32479924 32479929 GAGAAG - KHDRBS1 In_Frame_Del p.E110_K111del 0.10 TCGA-UZ-A9PM-01 1 39901268 39901268 T A MACF1 Silent p.I3879I 0.20 TCGA-UZ-A9PM-01 1 40880943 40880943 G T SMAP2 Splice_Site p.X191_splice 0.08 TCGA-UZ-A9PM-01 1 52520850 52520850 C G TXNDC12 5'UTR 0.23 TCGA-UZ-A9PM-01 1 52520851 52520851 C T TXNDC12 5'UTR 0.22 TCGA-UZ-A9PM-01 1 6695713 6695713 T A DNAJC11 3'UTR 0.14 TCGA-UZ-A9PM-01 1 6695723 6695723 G A DNAJC11 3'UTR 0.13 TCGA-UZ-A9PM-01 20 23334728 23334728 C A NXT1 Missense_Mutation p.A17D 0.16 deleterious(0) probably_damaging(0.971) TCGA-UZ-A9PM-01 20 48808752 48808752 T G CEBPB 3'UTR 0.14 TCGA-UZ-A9PM-01 22 30163369 30163369 A T UQCR10 5'UTR 0.11 TCGA-UZ-A9PM-01 22 30860885 30860885 T C SEC14L3 Missense_Mutation p.K196E 0.15 deleterious(0) possibly_damaging(0.7) TCGA-UZ-A9PM-01 22 39479829 39479829 G A APOBEC3G Silent p.E225E 0.18 TCGA-UZ-A9PM-01 22 50876323 50876323 G A PPP6R2 Silent p.E585E 0.12 TCGA-UZ-A9PM-01 2 196825319 196825319 C T DNAH7 Silent p.R852R 0.17 TCGA-UZ-A9PM-01 2 62099619 62099619 A C CCT4 Missense_Mutation p.C410W 0.13 deleterious(0) probably_damaging(1) TCGA-UZ-A9PM-01 3 122437700 122437700 G A PARP14 Missense_Mutation p.D1568N 0.15 tolerated(0.56) benign(0.034) TCGA-UZ-A9PM-01 3 122437701 122437701 A T PARP14 Missense_Mutation p.D1568V 0.15 tolerated(0.43) benign(0.009) TCGA-UZ-A9PM-01 3 129285459 129285459 C T PLXND1 Missense_Mutation p.E1368K 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.741) TCGA-UZ-A9PM-01 3 130720142 130720142 A T ATP2C1 Missense_Mutation p.E937V 0.31 tolerated(0.08) benign(0.192) TCGA-UZ-A9PM-01 3 145841934 145841934 A G PLOD2 Silent p.Y64Y 0.15 TCGA-UZ-A9PM-01 3 15132018 15132018 C G ZFYVE20 Missense_Mutation p.K59N 0.13 deleterious(0.01) probably_damaging(0.985) TCGA-UZ-A9PM-01 3 176782770 176782770 A G TBL1XR1 5'UTR 0.29 TCGA-UZ-A9PM-01 3 180325663 180325663 A T TTC14 Intron 0.15 TCGA-UZ-A9PM-01 3 184039868 184039868 T C EIF4G1 Missense_Mutation p.L506S 0.27 tolerated(0.11) benign(0.004) TCGA-UZ-A9PM-01 3 48658418 48658418 G A TMEM89 Missense_Mutation p.R113W 0.23 deleterious(0) probably_damaging(0.977) TCGA-UZ-A9PM-01 4 146071985 146071985 T A OTUD4 Missense_Mutation p.K282N 0.19 deleterious(0) probably_damaging(0.977) TCGA-UZ-A9PM-01 4 159568062 159568062 G C RXFP1 Missense_Mutation p.G489R 0.14 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PM-01 5 140953320 140953320 T G DIAPH1 Silent p.G699G 0.21 TCGA-UZ-A9PM-01 5 143586905 143586905 A T KCTD16 Missense_Mutation p.N210Y 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-UZ-A9PM-01 5 174937182 174937182 A G SFXN1 Missense_Mutation p.R136G 0.17 deleterious(0) probably_damaging(0.967) TCGA-UZ-A9PM-01 6 43316086 43316086 C T ZNF318 Silent p.S1016S 0.15 TCGA-UZ-A9PM-01 6 90415775 90415775 T C MDN1 Intron 0.18 TCGA-UZ-A9PM-01 7 100488697 100488697 G T ACHE Missense_Mutation p.P579H 0.09 tolerated(0.14) probably_damaging(0.996) TCGA-UZ-A9PM-01 7 101882669 101882669 A C CUX1 Missense_Mutation p.E1242A 0.24 deleterious(0.01) unknown(0) TCGA-UZ-A9PM-01 7 134849670 134849670 C G TMEM140 Silent p.A159A 0.25 TCGA-UZ-A9PM-01 7 151254052 151254052 C G PRKAG2 3'UTR 0.44 TCGA-UZ-A9PM-01 7 44079191 44079191 C T LINC00957 RNA 0.47 TCGA-UZ-A9PM-01 7 99702504 99702504 T A AP4M1 Missense_Mutation p.L205Q 0.24 deleterious(0.02) possibly_damaging(0.586) TCGA-UZ-A9PM-01 8 125335567 125335567 A G TMEM65 Missense_Mutation p.M156T 0.24 deleterious(0) benign(0.287) TCGA-UZ-A9PM-01 8 131880154 131880154 C T ADCY8 Silent p.L716L 0.16 TCGA-UZ-A9PM-01 8 139180230 139180230 G A FAM135B Missense_Mutation p.P389L 0.04 deleterious(0) probably_damaging(1) TCGA-UZ-A9PM-01 8 49644024 49644024 A T EFCAB1 Missense_Mutation p.Y33N 0.16 tolerated(0.53) benign(0.001) TCGA-UZ-A9PM-01 9 116931634 116931634 C T COL27A1 Missense_Mutation p.S600F 0.19 unknown(0) TCGA-UZ-A9PM-01 9 123738998 123738998 C T C5 Missense_Mutation p.G1282S 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-UZ-A9PM-01 9 40773400 40773400 C T ZNF658 Silent p.T625T 0.20 TCGA-UZ-A9PM-01 9 66553551 66553551 G C RP11-262H14.4 RNA 0.07 TCGA-UZ-A9PM-01 9 712847 712847 C T KANK1 Missense_Mutation p.S694F 0.17 deleterious(0) possibly_damaging(0.895) TCGA-UZ-A9PM-01 9 96010089 96010089 T C WNK2 Silent p.L603L 0.24 TCGA-UZ-A9PM-01 X 155171620 155171620 G T VAMP7 Missense_Mutation p.K200N 0.25 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-UZ-A9PM-01 X 53641606 53641606 C G HUWE1 Missense_Mutation p.R717T 0.22 possibly_damaging(0.731) TCGA-UZ-A9PM-01 X 69500417 69500417 G C ARR3 Missense_Mutation p.G333A 0.46 deleterious(0.01) possibly_damaging(0.54) TCGA-UZ-A9PM-01 X 71354534 71354534 T A NHSL2 Missense_Mutation p.I247N 0.27 deleterious(0) possibly_damaging(0.843) TCGA-UZ-A9PM-01 X 82763464 82763464 G - POU3F4 Frame_Shift_Del p.G45Efs*14 0.24 TCGA-UZ-A9PN-01 10 96305623 96305623 C T HELLS 5'UTR 0.29 TCGA-UZ-A9PN-01 11 14276198 14276198 G C SPON1 RNA 0.28 TCGA-UZ-A9PN-01 11 35006233 35006233 T C PDHX Silent p.D380D 0.17 TCGA-UZ-A9PN-01 11 48142552 48142552 T A PTPRJ Intron 0.26 TCGA-UZ-A9PN-01 11 58477502 58477502 G T GLYAT Missense_Mutation p.L210M 0.18 deleterious(0.04) probably_damaging(0.941) TCGA-UZ-A9PN-01 11 64056714 64056714 C A GPR137 Missense_Mutation p.H435Q 0.08 tolerated_low_confidence(0.19) benign(0.002) TCGA-UZ-A9PN-01 11 65422254 65422277 AGGGCCTGGGGCTAGGACTGGGAC - RELA In_Frame_Del p.V410_P417del 0.18 TCGA-UZ-A9PN-01 11 89223839 89223839 A G NOX4 Intron 0.25 TCGA-UZ-A9PN-01 12 104056744 104056744 C T STAB2 Nonsense_Mutation p.R664* 0.32 TCGA-UZ-A9PN-01 12 44198327 44198327 T C TWF1 Missense_Mutation p.Y25C 0.23 tolerated(0.05) benign(0.035) TCGA-UZ-A9PN-01 12 54422350 54422350 C T HOXC6 Silent p.A15A 0.25 TCGA-UZ-A9PN-01 12 56495550 56495550 C T ERBB3 Missense_Mutation p.P1247L 0.21 tolerated(0.08) benign(0.01) TCGA-UZ-A9PN-01 13 113976786 113976786 G - LAMP1 3'UTR 0.19 TCGA-UZ-A9PN-01 14 77723156 77723156 C T TMEM63C 3'UTR 0.56 TCGA-UZ-A9PN-01 15 102190371 102190371 G C TM2D3 Intron 0.21 TCGA-UZ-A9PN-01 15 35275396 35275396 A G ZNF770 Silent p.P80P 0.27 TCGA-UZ-A9PN-01 15 42148681 42148682 - G SPTBN5 Frame_Shift_Ins p.Q2975Pfs*33 0.19 TCGA-UZ-A9PN-01 15 43891569 43891569 G C CKMT1B 3'UTR 0.30 TCGA-UZ-A9PN-01 15 43891570 43891570 C A CKMT1B 3'UTR 0.30 TCGA-UZ-A9PN-01 15 65394691 65394691 A T UBAP1L Missense_Mutation p.V151E 0.30 deleterious(0.03) possibly_damaging(0.55) TCGA-UZ-A9PN-01 15 84228033 84228033 A C SH3GL3 Missense_Mutation p.E25A 0.20 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PN-01 15 87089231 87089231 A G AGBL1 Splice_Site p.X850_splice 0.21 TCGA-UZ-A9PN-01 16 29680395 29680395 G C SPN 3'UTR 0.28 TCGA-UZ-A9PN-01 16 30435726 30435726 A T DCTPP1 Missense_Mutation p.L114Q 0.29 deleterious(0) probably_damaging(1) TCGA-UZ-A9PN-01 16 4987120 4987120 G T PPL 5'UTR 0.44 TCGA-UZ-A9PN-01 16 68248266 68248266 A G NFATC3 Intron 0.24 TCGA-UZ-A9PN-01 16 71969381 71969381 C A RP11-498D10.6 3'Flank 0.25 TCGA-UZ-A9PN-01 16 727363 727363 G A RHBDL1 Silent p.L286L 0.26 TCGA-UZ-A9PN-01 17 26729265 26729266 TC - SLC46A1 Frame_Shift_Del p.E385Dfs*15 0.13 TCGA-UZ-A9PN-01 17 30349793 30349793 G T LRRC37B Missense_Mutation p.R543L 0.05 tolerated(0.18) benign(0.004) TCGA-UZ-A9PN-01 17 42267972 42267972 T A TMUB2 Missense_Mutation p.C236S 0.24 tolerated(0.5) benign(0.116) TCGA-UZ-A9PN-01 17 42437453 42437453 G - FAM171A2 Frame_Shift_Del p.L56Wfs*88 0.21 TCGA-UZ-A9PN-01 17 4842400 4842400 A T SLC25A11 Missense_Mutation p.L68H 0.19 deleterious(0) possibly_damaging(0.838) TCGA-UZ-A9PN-01 17 76089791 76089791 C G TNRC6C Missense_Mutation p.P1415R 0.28 tolerated(0.1) probably_damaging(0.937) TCGA-UZ-A9PN-01 18 33795903 33795903 T G MOCOS Missense_Mutation p.L587R 0.19 deleterious(0) probably_damaging(0.981) TCGA-UZ-A9PN-01 18 34205488 34205488 C T FHOD3 Silent p.H324H 0.24 TCGA-UZ-A9PN-01 18 42529882 42529882 T A SETBP1 Missense_Mutation p.Y193N 0.25 deleterious(0.05) probably_damaging(0.998) TCGA-UZ-A9PN-01 18 66365251 66365251 A G TMX3 Missense_Mutation p.L137P 0.24 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PN-01 19 15350822 15350822 C T BRD4 Missense_Mutation p.E1061K 0.37 benign(0.247) TCGA-UZ-A9PN-01 19 18418208 18418208 C T LSM4 3'UTR 0.25 TCGA-UZ-A9PN-01 19 3544832 3544832 C T MFSD12 Silent p.L465L 0.52 TCGA-UZ-A9PN-01 19 40743897 40743897 G T AKT2 Missense_Mutation p.D270E 0.27 tolerated(0.11) benign(0.096) TCGA-UZ-A9PN-01 19 40743898 40743898 T C AKT2 Missense_Mutation p.D270G 0.27 tolerated(0.66) benign(0.273) TCGA-UZ-A9PN-01 19 50104787 50104787 C G PRR12 Missense_Mutation p.P1462R 0.23 unknown(0) TCGA-UZ-A9PN-01 19 55897936 55897936 A G RPL28 Splice_Site p.X28_splice 0.27 TCGA-UZ-A9PN-01 1 103470193 103470193 G C COL11A1 Missense_Mutation p.P624A 0.22 unknown(0) TCGA-UZ-A9PN-01 1 153651789 153651789 C T NPR1 Missense_Mutation p.R69C 0.26 deleterious(0.05) possibly_damaging(0.452) TCGA-UZ-A9PN-01 1 156524143 156524143 G T IQGAP3 Silent p.L444L 0.16 TCGA-UZ-A9PN-01 1 161198533 161198536 ACAC - TOMM40L Frame_Shift_Del p.N238Kfs*14 0.24 TCGA-UZ-A9PN-01 1 183197671 183197671 A G LAMC2 Missense_Mutation p.N544S 0.23 deleterious(0.04) possibly_damaging(0.628) TCGA-UZ-A9PN-01 1 186281794 186281794 C T TPR 3'UTR 0.35 TCGA-UZ-A9PN-01 1 201030418 201030418 T G CACNA1S Missense_Mutation p.N1078H 0.19 deleterious(0.01) possibly_damaging(0.895) TCGA-UZ-A9PN-01 1 224424263 224424263 C A NVL Missense_Mutation p.D771Y 0.31 deleterious(0.01) benign(0.227) TCGA-UZ-A9PN-01 1 226172872 226172872 A G SDE2 3'UTR 0.09 TCGA-UZ-A9PN-01 20 10626724 10626724 C A JAG1 Missense_Mutation p.D632Y 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-UZ-A9PN-01 20 48253909 48253909 G T B4GALT5 Missense_Mutation p.H330N 0.05 tolerated(0.06) probably_damaging(1) TCGA-UZ-A9PN-01 20 49520434 49520434 G T ADNP Missense_Mutation p.H34N 0.37 tolerated(0.06) possibly_damaging(0.696) TCGA-UZ-A9PN-01 20 61443936 61443936 C A OGFR Silent p.A323A 0.19 TCGA-UZ-A9PN-01 21 46032797 46032797 A T KRTAP10-8 Nonstop_Mutation p.*260Cext*11 0.43 TCGA-UZ-A9PN-01 22 25145368 25145368 T G PIWIL3 Intron 0.19 TCGA-UZ-A9PN-01 22 38611379 38611379 A C MAFF 3'UTR 0.29 TCGA-UZ-A9PN-01 2 128390937 128390937 A G MYO7B Missense_Mutation p.E1811G 0.16 deleterious(0) possibly_damaging(0.632) TCGA-UZ-A9PN-01 2 132020992 132020992 T C POTEE Missense_Mutation p.I655T 0.24 deleterious_low_confidence(0) possibly_damaging(0.478) TCGA-UZ-A9PN-01 2 141598582 141598582 C T LRP1B Silent p.T1673T 0.16 TCGA-UZ-A9PN-01 2 197870520 197870520 C T ANKRD44 Missense_Mutation p.A724T 0.25 tolerated(0.63) probably_damaging(0.998) TCGA-UZ-A9PN-01 2 233651983 233651983 G T GIGYF2 Missense_Mutation p.G241V 0.28 probably_damaging(1) TCGA-UZ-A9PN-01 2 234112949 234112949 G A INPP5D Silent p.P1039P 0.29 TCGA-UZ-A9PN-01 2 234545301 234545301 G A UGT1A10 Missense_Mutation p.V45M 0.28 deleterious(0.03) possibly_damaging(0.897) TCGA-UZ-A9PN-01 2 238950110 238950110 T C UBE2F 3'UTR 0.22 TCGA-UZ-A9PN-01 3 183979036 183979036 C - CAMK2N2 Frame_Shift_Del p.G13Afs*46 0.28 TCGA-UZ-A9PN-01 3 52019244 52019244 A G ACY1 Missense_Mutation p.E39G 0.56 tolerated(0.05) benign(0.007) TCGA-UZ-A9PN-01 4 120221731 120221731 T C C4orf3 Missense_Mutation p.H120R 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-UZ-A9PN-01 4 39207353 39207353 A G WDR19 Missense_Mutation p.N296S 0.29 tolerated(0.1) benign(0.023) TCGA-UZ-A9PN-01 5 140616087 140616087 C G PCDHB18 RNA 0.41 TCGA-UZ-A9PN-01 5 140626523 140626523 C T PCDHB15 Silent p.F459F 0.21 TCGA-UZ-A9PN-01 5 179267940 179267940 C T C5orf45 Missense_Mutation p.V157I 0.26 tolerated(0.33) benign(0.009) TCGA-UZ-A9PN-01 5 2747552 2747552 G C IRX2 Intron 0.21 TCGA-UZ-A9PN-01 5 43624161 43624161 G A NNT Missense_Mutation p.G239R 0.23 deleterious(0) probably_damaging(0.993) TCGA-UZ-A9PN-01 6 101109798 101109798 C T ASCC3 Missense_Mutation p.E863K 0.20 deleterious(0.04) possibly_damaging(0.589) TCGA-UZ-A9PN-01 6 10415335 10415335 A G TFAP2A 5'UTR 0.09 TCGA-UZ-A9PN-01 6 12163682 12163682 G A HIVEP1 Missense_Mutation p.S2382N 0.12 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PN-01 6 33289303 33289303 C T DAXX Silent p.E83E 0.22 TCGA-UZ-A9PN-01 6 99728940 99728940 C A FAXC 3'UTR 0.29 TCGA-UZ-A9PN-01 7 141352709 141352709 A - AGK Frame_Shift_Del p.S419Afs*70 0.15 TCGA-UZ-A9PN-01 7 94041426 94041426 G T COL1A2 Missense_Mutation p.G466V 0.20 probably_damaging(1) TCGA-UZ-A9PN-01 8 10892790 10892790 C G XKR6 Intron 0.29 TCGA-UZ-A9PN-01 8 53025847 53025847 T C ST18 Missense_Mutation p.M1019V 0.19 deleterious(0) probably_damaging(0.993) TCGA-UZ-A9PN-01 9 131183331 131183331 C T CERCAM Missense_Mutation p.P59S 0.23 deleterious(0) probably_damaging(1) TCGA-UZ-A9PN-01 9 32542179 32542179 T C TOPORS Missense_Mutation p.T782A 0.17 tolerated_low_confidence(1) unknown(0) TCGA-UZ-A9PN-01 9 91041456 91041456 T A SPIN1 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) benign(0.15) TCGA-UZ-A9PN-01 X 49143255 49143255 G A PPP1R3F Silent p.G701G 0.53 TCGA-UZ-A9PN-01 X 5811459 5811459 T G NLGN4X Missense_Mutation p.D617A 0.45 tolerated(0.2) benign(0.129) TCGA-UZ-A9PO-01 10 115933972 115933972 A G C10orf118 5'UTR 0.28 TCGA-UZ-A9PO-01 10 118434763 118434763 G A HSPA12A Silent p.V519V 0.30 TCGA-UZ-A9PO-01 10 128936095 128936095 T A FAM196A 3'UTR 0.38 TCGA-UZ-A9PO-01 10 75147485 75147485 G T ANXA7 Missense_Mutation p.Q221K 0.27 deleterious(0.02) benign(0.381) TCGA-UZ-A9PO-01 11 105880566 105880567 - TG MSANTD4 Frame_Shift_Ins p.M245Tfs*9 0.23 TCGA-UZ-A9PO-01 11 117160130 117160130 T A BACE1 3'UTR 0.50 TCGA-UZ-A9PO-01 11 2427988 2427988 C T TRPM5 Missense_Mutation p.V1052I 0.12 tolerated(0.62) benign(0.025) TCGA-UZ-A9PO-01 12 113602055 113602055 C G DDX54 Silent p.L585L 0.39 TCGA-UZ-A9PO-01 12 120530940 120530940 T C CCDC64 Missense_Mutation p.L566P 0.18 deleterious(0) possibly_damaging(0.509) TCGA-UZ-A9PO-01 12 40961454 40961454 G C MUC19 3'UTR 0.46 TCGA-UZ-A9PO-01 12 57968953 57968953 G T KIF5A Silent p.V601V 0.24 TCGA-UZ-A9PO-01 13 32813948 32813948 A G FRY Missense_Mutation p.N2206S 0.24 tolerated(0.28) benign(0.079) TCGA-UZ-A9PO-01 13 96508522 96508522 G T UGGT2 Missense_Mutation p.L1300I 0.31 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PO-01 14 102880977 102880977 T C TECPR2 Missense_Mutation p.L162P 0.21 deleterious(0.01) benign(0.304) TCGA-UZ-A9PO-01 14 106379088 106379088 C T IGHD4-4 Silent p.Q3Q 0.30 TCGA-UZ-A9PO-01 14 21875030 21875030 G C CHD8 Silent p.L964L 0.35 TCGA-UZ-A9PO-01 14 23564645 23564645 T A C14orf119 5'UTR 0.31 TCGA-UZ-A9PO-01 14 70634950 70634950 A T SLC8A3 Missense_Mutation p.Y64N 0.27 tolerated(0.42) benign(0.009) TCGA-UZ-A9PO-01 15 27773100 27773105 AGATGG - GABRG3 In_Frame_Del p.R362_W363del 0.19 TCGA-UZ-A9PO-01 15 40764660 40764660 A - CHST14 3'UTR 0.24 TCGA-UZ-A9PO-01 15 52861139 52861144 GGCCGA - ARPP19 Intron 0.22 TCGA-UZ-A9PO-01 15 75140977 75141001 ATGTAGATCCCTATTTGACAAAAAA - SCAMP2 Frame_Shift_Del p.F225Sfs*33 0.21 TCGA-UZ-A9PO-01 15 75498964 75498964 G A C15orf39 Missense_Mutation p.R192Q 0.18 tolerated(0.39) benign(0.417) TCGA-UZ-A9PO-01 16 1417847 1417848 AC - UNKL Frame_Shift_Del p.V530Pfs*36 0.28 TCGA-UZ-A9PO-01 16 21974187 21974187 C T UQCRC2 Silent p.A165A 0.48 TCGA-UZ-A9PO-01 16 23711991 23711991 G A ERN2 Missense_Mutation p.T513I 0.44 tolerated(0.25) benign(0.002) TCGA-UZ-A9PO-01 16 2815043 2815043 T C SRRM2 Missense_Mutation p.L1505P 0.30 unknown(0) TCGA-UZ-A9PO-01 16 3065429 3065429 G A CLDN6 Silent p.A198A 0.24 TCGA-UZ-A9PO-01 16 75448473 75448473 C T RP11-77K12.1 Intron 0.26 TCGA-UZ-A9PO-01 16 84132688 84132688 T G MBTPS1 Missense_Mutation p.K131Q 0.16 tolerated(0.46) benign(0.007) TCGA-UZ-A9PO-01 16 90109496 90109496 T A GAS8 Intron 0.57 TCGA-UZ-A9PO-01 17 10400485 10400485 C A MYH1 Missense_Mutation p.Q1519H 0.43 deleterious(0.04) benign(0.119) TCGA-UZ-A9PO-01 17 1326771 1326771 T G CRK 3'UTR 0.19 TCGA-UZ-A9PO-01 17 26554563 26554563 C A PYY2 RNA 0.07 TCGA-UZ-A9PO-01 17 38430244 38430244 T - WIPF2 Frame_Shift_Del p.F392Sfs*14 0.29 TCGA-UZ-A9PO-01 17 42854576 42854576 G T ADAM11 Missense_Mutation p.G575V 0.11 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PO-01 17 53040589 53040589 C A COX11 Intron 0.14 TCGA-UZ-A9PO-01 17 74943970 74943970 T C MGAT5B Missense_Mutation p.F670S 0.17 deleterious(0.05) benign(0.034) TCGA-UZ-A9PO-01 17 78450218 78450227 CAGGTGCGCG - NPTX1 Frame_Shift_Del p.A7Vfs*64 0.40 TCGA-UZ-A9PO-01 18 2931299 2931299 G C LPIN2 Missense_Mutation p.L471V 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-UZ-A9PO-01 18 5395104 5395104 T C EPB41L3 Missense_Mutation p.I1039V 0.31 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PO-01 18 61018276 61018276 G T KDSR Missense_Mutation p.P152T 0.30 tolerated(0.33) benign(0.057) TCGA-UZ-A9PO-01 18 8244180 8244180 A G PTPRM Missense_Mutation p.M809V 0.31 tolerated(0.21) benign(0.006) TCGA-UZ-A9PO-01 18 8380303 8380303 C T PTPRM Nonsense_Mutation p.Q1266* 0.37 TCGA-UZ-A9PO-01 19 10662945 10662945 G A ATG4D Missense_Mutation p.G396D 0.36 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PO-01 19 11358812 11358812 G A DOCK6 Missense_Mutation p.R246C 0.33 deleterious(0.02) probably_damaging(0.943) TCGA-UZ-A9PO-01 19 13263840 13263840 A T IER2 5'UTR 0.44 TCGA-UZ-A9PO-01 19 17670124 17670124 G A COLGALT1 Missense_Mutation p.A89T 0.28 deleterious(0.04) benign(0.099) TCGA-UZ-A9PO-01 19 2254452 2254452 C T JSRP1 Missense_Mutation p.V47M 0.32 tolerated(0.08) benign(0.001) TCGA-UZ-A9PO-01 19 31039335 31039335 A T ZNF536 Nonsense_Mutation p.K937* 0.23 TCGA-UZ-A9PO-01 19 33597758 33597758 T G GPATCH1 Missense_Mutation p.L413R 0.36 deleterious(0) probably_damaging(0.918) TCGA-UZ-A9PO-01 19 36640842 36640842 G T CAPNS1 3'UTR 0.43 TCGA-UZ-A9PO-01 19 37314679 37314679 C T ZNF790 Missense_Mutation p.R8K 0.15 tolerated(0.47) benign(0.013) TCGA-UZ-A9PO-01 19 40883752 40883752 C G PLD3 Missense_Mutation p.N415K 0.31 deleterious(0) possibly_damaging(0.585) TCGA-UZ-A9PO-01 19 42804227 42804227 C T PAFAH1B3 Silent p.V101V 0.22 TCGA-UZ-A9PO-01 19 42873075 42873075 G A MEGF8 Missense_Mutation p.D2121N 0.34 tolerated(0.33) benign(0.163) TCGA-UZ-A9PO-01 19 49926468 49926468 C A PTH2 Splice_Site p.X43_splice 0.12 TCGA-UZ-A9PO-01 19 50161046 50161046 G T SCAF1 Missense_Mutation p.R1216L 0.24 probably_damaging(0.984) TCGA-UZ-A9PO-01 19 50357983 50357983 C T PTOV1 Silent p.G128G 0.33 TCGA-UZ-A9PO-01 19 53344638 53344638 T C ZNF468 Silent p.E303E 0.29 TCGA-UZ-A9PO-01 1 109242733 109242733 T A PRPF38B 3'UTR 0.35 TCGA-UZ-A9PO-01 1 11848509 11848511 AGT - MTHFR 3'UTR 0.23 TCGA-UZ-A9PO-01 1 161989728 161989728 G T OLFML2B Missense_Mutation p.A140E 0.20 deleterious(0.04) possibly_damaging(0.65) TCGA-UZ-A9PO-01 1 206821237 206821237 C A DYRK3 Silent p.R232R 0.27 TCGA-UZ-A9PO-01 1 32149737 32149737 G - COL16A1 Frame_Shift_Del p.E753Kfs*23 0.28 TCGA-UZ-A9PO-01 1 36941099 36941099 A G CSF3R Silent p.D80D 0.23 TCGA-UZ-A9PO-01 1 40031014 40031014 A C PABPC4 Missense_Mutation p.F337V 0.33 deleterious(0) probably_damaging(1) TCGA-UZ-A9PO-01 1 44475672 44475672 C T SLC6A9 Missense_Mutation p.C168Y 0.26 deleterious(0.04) probably_damaging(0.966) TCGA-UZ-A9PO-01 1 47403742 47403742 T C CYP4A11 Missense_Mutation p.H88R 0.33 tolerated(0.49) benign(0) TCGA-UZ-A9PO-01 1 53387119 53387119 T C ECHDC2 Intron 0.28 TCGA-UZ-A9PO-01 1 59127169 59127169 A G MYSM1 Missense_Mutation p.F727L 0.24 tolerated(0.11) possibly_damaging(0.667) TCGA-UZ-A9PO-01 1 93671122 93671122 A G CCDC18 Missense_Mutation p.N338S 0.28 deleterious(0.01) possibly_damaging(0.81) TCGA-UZ-A9PO-01 1 94344720 94344720 G A DNTTIP2 5'UTR 0.11 TCGA-UZ-A9PO-01 20 270903 270903 A T C20orf96 Silent p.V22V 0.35 TCGA-UZ-A9PO-01 20 42697512 42697512 G C TOX2 3'UTR 0.17 TCGA-UZ-A9PO-01 20 42697513 42697513 C T TOX2 3'UTR 0.21 TCGA-UZ-A9PO-01 20 42965703 42965704 - G R3HDML 5'UTR 0.21 TCGA-UZ-A9PO-01 20 43804687 43804687 C A PI3 Missense_Mutation p.P89T 0.42 deleterious(0.05) possibly_damaging(0.644) TCGA-UZ-A9PO-01 20 55028020 55028020 G C CASS4 Missense_Mutation p.E596D 0.23 tolerated(0.27) benign(0.107) TCGA-UZ-A9PO-01 20 56098318 56098318 T C CTCFL Missense_Mutation p.E187G 0.45 tolerated(0.05) benign(0.025) TCGA-UZ-A9PO-01 21 17250242 17250242 A T USP25 Missense_Mutation p.E976V 0.25 deleterious(0.02) benign(0.369) TCGA-UZ-A9PO-01 21 45108040 45108040 G A RRP1B Silent p.K595K 0.31 TCGA-UZ-A9PO-01 21 45789155 45789155 G C TRPM2 Missense_Mutation p.G234R 0.34 deleterious(0.04) benign(0.078) TCGA-UZ-A9PO-01 22 25158388 25158388 G T PIWIL3 Missense_Mutation p.P27T 0.34 tolerated(0.43) benign(0.032) TCGA-UZ-A9PO-01 22 37458580 37458580 G C KCTD17 Missense_Mutation p.E280D 0.20 deleterious_low_confidence(0.01) benign(0.196) TCGA-UZ-A9PO-01 22 37458581 37458581 G T KCTD17 Missense_Mutation p.A281S 0.17 deleterious_low_confidence(0) benign(0.379) TCGA-UZ-A9PO-01 22 38476908 38476913 ACTGGG - SLC16A8 In_Frame_Del p.P378_S379del 0.18 TCGA-UZ-A9PO-01 2 118572273 118572273 G - DDX18 5'UTR 0.17 TCGA-UZ-A9PO-01 2 170403017 170403017 T - FASTKD1 Frame_Shift_Del p.N471Ifs*2 0.19 TCGA-UZ-A9PO-01 2 219920563 219920563 C A IHH Missense_Mutation p.G201V 0.34 deleterious(0) probably_damaging(1) TCGA-UZ-A9PO-01 2 242611647 242611647 G T ATG4B Nonsense_Mutation p.E384* 0.21 TCGA-UZ-A9PO-01 2 24413640 24413640 G A FAM228A 3'UTR 0.33 TCGA-UZ-A9PO-01 2 55795473 55795473 T - SMEK2 Frame_Shift_Del p.I598Lfs*22 0.18 TCGA-UZ-A9PO-01 3 121976017 121976017 C A CASR Missense_Mutation p.T92K 0.36 deleterious(0.02) probably_damaging(0.933) TCGA-UZ-A9PO-01 3 126748348 126748348 C G PLXNA1 Silent p.S1613S 0.30 TCGA-UZ-A9PO-01 3 13672240 13672240 G A FBLN2 Missense_Mutation p.A1004T 0.22 deleterious(0.04) benign(0.16) TCGA-UZ-A9PO-01 3 184428718 184428718 C A MAGEF1 Missense_Mutation p.A298S 0.31 tolerated_low_confidence(0.09) benign(0.364) TCGA-UZ-A9PO-01 3 28361046 28361046 A G CMC1 Missense_Mutation p.K83E 0.29 tolerated(0.42) benign(0.029) TCGA-UZ-A9PO-01 3 33894093 33894093 G A PDCD6IP Silent p.L590L 0.27 TCGA-UZ-A9PO-01 3 37368460 37368460 C - GOLGA4 Frame_Shift_Del p.K1718Sfs*11 0.23 TCGA-UZ-A9PO-01 3 42947750 42947750 C T ZNF662 5'UTR 0.27 TCGA-UZ-A9PO-01 3 53290029 53290029 G T TKT 5'UTR 0.33 TCGA-UZ-A9PO-01 3 58817468 58817468 C T C3orf67 Missense_Mutation p.V456I 0.29 deleterious(0.04) benign(0.196) TCGA-UZ-A9PO-01 3 75471494 75471494 T G FAM86DP RNA 0.35 TCGA-UZ-A9PO-01 4 106163493 106163493 A T TET2 Intron 0.41 TCGA-UZ-A9PO-01 4 13603230 13603230 T C BOD1L1 Missense_Mutation p.N1765S 0.26 benign(0.164) TCGA-UZ-A9PO-01 4 162307261 162307261 G T FSTL5 Missense_Mutation p.Q728K 0.44 tolerated(0.64) benign(0.038) TCGA-UZ-A9PO-01 4 248496 248496 C T ZNF876P RNA 0.35 TCGA-UZ-A9PO-01 4 68442967 68442967 C T STAP1 Missense_Mutation p.T118I 0.21 deleterious(0) possibly_damaging(0.907) TCGA-UZ-A9PO-01 4 69203170 69203170 T C YTHDC1 Splice_Site p.X154_splice 0.24 TCGA-UZ-A9PO-01 4 7691237 7691237 C G SORCS2 Missense_Mutation p.L505V 0.42 deleterious(0) probably_damaging(0.936) TCGA-UZ-A9PO-01 4 77661982 77661982 C G SHROOM3 Missense_Mutation p.L886V 0.06 tolerated(0.74) possibly_damaging(0.489) TCGA-UZ-A9PO-01 4 960305 960305 C T DGKQ Silent p.T459T 0.24 TCGA-UZ-A9PO-01 5 140559171 140559171 C G PCDHB8 Missense_Mutation p.S519W 0.14 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-UZ-A9PO-01 5 140725344 140725344 G A PCDHGA3 Missense_Mutation p.A582T 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.881) TCGA-UZ-A9PO-01 5 176734952 176734952 T C MXD3 Missense_Mutation p.Q112R 0.33 tolerated(0.07) probably_damaging(0.997) TCGA-UZ-A9PO-01 5 56161247 56161247 C G MAP3K1 Missense_Mutation p.D372E 0.21 deleterious(0) benign(0.156) TCGA-UZ-A9PO-01 5 56161266 56161266 A C MAP3K1 Missense_Mutation p.T379P 0.22 deleterious(0) benign(0.01) TCGA-UZ-A9PO-01 5 74676981 74676981 A - COL4A3BP Frame_Shift_Del p.C683Vfs*5 0.20 TCGA-UZ-A9PO-01 5 96130824 96130824 A T ERAP1 Missense_Mutation p.D280E 0.28 tolerated(0.76) benign(0.001) TCGA-UZ-A9PO-01 6 110943359 110943359 C T CDK19 Missense_Mutation p.G348S 0.28 tolerated(0.1) benign(0.185) TCGA-UZ-A9PO-01 6 32942389 32942389 C A BRD2 Missense_Mutation p.N60K 0.28 deleterious(0) benign(0.258) TCGA-UZ-A9PO-01 6 44279883 44279883 C T AARS2 Missense_Mutation p.V121M 0.31 deleterious(0) probably_damaging(1) TCGA-UZ-A9PO-01 7 152132948 152132948 C T KMT2C 5'UTR 0.05 TCGA-UZ-A9PO-01 7 48146603 48146603 G C UPP1 Silent p.L190L 0.27 TCGA-UZ-A9PO-01 7 50175730 50175730 T G C7orf72 Missense_Mutation p.S302A 0.16 tolerated(0.17) benign(0.031) TCGA-UZ-A9PO-01 7 76140096 76140096 G T UPK3B Missense_Mutation p.G43W 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UZ-A9PO-01 7 90044422 90044423 - AA CLDN12 3'UTR 0.25 TCGA-UZ-A9PO-01 8 12886088 12886088 T C KIAA1456 3'UTR 0.26 TCGA-UZ-A9PO-01 8 3046428 3046428 G A CSMD1 Missense_Mutation p.T1835M 0.06 possibly_damaging(0.814) TCGA-UZ-A9PO-01 9 131709023 131709023 C T DOLK Missense_Mutation p.R187H 0.24 deleterious(0.02) possibly_damaging(0.855) TCGA-UZ-A9PO-01 9 135546223 135546223 G C GTF3C4 Missense_Mutation p.V80L 0.24 deleterious(0.02) probably_damaging(0.973) TCGA-UZ-A9PO-01 9 33026990 33026990 T G DNAJA1 Splice_Site p.X104_splice 0.06 TCGA-UZ-A9PO-01 9 36058855 36058855 A T RECK Missense_Mutation p.K64I 0.28 deleterious(0.03) benign(0) TCGA-UZ-A9PO-01 9 77300609 77300609 T G RORB 3'UTR 0.26 TCGA-UZ-A9PO-01 X 12905654 12905654 A G TLR7 Missense_Mutation p.N676S 0.54 tolerated(0.78) benign(0.004) TCGA-UZ-A9PO-01 X 153005611 153005611 G T ABCD1 Silent p.R518R 0.63 TCGA-UZ-A9PO-01 X 54841870 54841870 T G MAGED2 Missense_Mutation p.W526G 0.62 tolerated(0.17) probably_damaging(0.936) TCGA-UZ-A9PP-01 10 126097337 126097337 A G OAT Missense_Mutation p.Y133H 0.27 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PP-01 10 97385198 97385198 G T ALDH18A1 Silent p.I389I 0.08 TCGA-UZ-A9PP-01 11 119020846 119020846 A T ABCG4 Silent p.S57S 0.53 TCGA-UZ-A9PP-01 11 14992664 14992664 T A CALCA Silent p.A25A 0.33 TCGA-UZ-A9PP-01 11 65320922 65320922 T A LTBP3 Missense_Mutation p.K315M 0.37 deleterious(0) probably_damaging(1) TCGA-UZ-A9PP-01 12 113733831 113733831 G A TPCN1 Missense_Mutation p.A873T 0.37 tolerated(0.72) unknown(0) TCGA-UZ-A9PP-01 12 123065184 123065184 G A KNTC1 Missense_Mutation p.M983I 0.53 tolerated(0.42) benign(0) TCGA-UZ-A9PP-01 12 133158846 133158846 A G FBRSL1 Missense_Mutation p.Q775R 0.55 tolerated(0.42) benign(0.003) TCGA-UZ-A9PP-01 12 22208120 22208120 G A CMAS Missense_Mutation p.V100M 0.27 deleterious(0) probably_damaging(0.994) TCGA-UZ-A9PP-01 12 51752941 51752941 A G GALNT6 Missense_Mutation p.L448P 0.06 tolerated(1) benign(0.11) TCGA-UZ-A9PP-01 12 57029985 57029985 C T BAZ2A 5'UTR 0.38 TCGA-UZ-A9PP-01 12 6887606 6887606 T C LAG3 3'UTR 0.35 TCGA-UZ-A9PP-01 13 110844571 110844571 G A COL4A1 Missense_Mutation p.A509V 0.26 benign(0.227) TCGA-UZ-A9PP-01 13 110844572 110844572 C G COL4A1 Missense_Mutation p.A509P 0.26 benign(0.007) TCGA-UZ-A9PP-01 13 24515430 24515430 T A ANKRD20A19P Intron 0.43 TCGA-UZ-A9PP-01 14 39777771 39777775 AAATG - CTAGE5 Frame_Shift_Del p.M399Tfs*21 0.22 TCGA-UZ-A9PP-01 14 53522531 53522531 T G DDHD1 Missense_Mutation p.M698L 0.45 tolerated(0.15) benign(0.034) TCGA-UZ-A9PP-01 15 42491828 42491828 T A VPS39 Intron 0.40 TCGA-UZ-A9PP-01 15 75135403 75135403 A G ULK3 Missense_Mutation p.I15T 0.31 tolerated(0.36) benign(0.289) TCGA-UZ-A9PP-01 15 85476403 85476403 T A SLC28A1 Missense_Mutation p.S371T 0.41 tolerated(0.07) probably_damaging(0.998) TCGA-UZ-A9PP-01 16 1866935 1866935 G T HAGH Missense_Mutation p.P236T 0.08 deleterious(0.03) possibly_damaging(0.827) TCGA-UZ-A9PP-01 16 30666905 30666905 G A PRR14 Missense_Mutation p.R466Q 0.57 deleterious(0) probably_damaging(0.997) TCGA-UZ-A9PP-01 16 698292 698292 T C FAM195A 3'UTR 0.64 TCGA-UZ-A9PP-01 17 29622689 29622689 T G OMG Missense_Mutation p.T221P 0.28 deleterious(0.02) possibly_damaging(0.541) TCGA-UZ-A9PP-01 17 37619180 37619180 C A CDK12 Missense_Mutation p.Q286K 0.29 unknown(0) TCGA-UZ-A9PP-01 17 42267031 42267031 A G TMUB2 Intron 0.38 TCGA-UZ-A9PP-01 17 4688689 4688689 T C VMO1 Missense_Mutation p.N193D 0.19 deleterious(0) probably_damaging(0.984) TCGA-UZ-A9PP-01 17 65944312 65944312 C T BPTF Nonsense_Mutation p.Q2606* 0.22 TCGA-UZ-A9PP-01 18 21112245 21112245 G T NPC1 Missense_Mutation p.P1253Q 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-UZ-A9PP-01 18 34376855 34376855 G T TPGS2 Silent p.G272G 0.06 TCGA-UZ-A9PP-01 18 44595931 44595931 T G KATNAL2 Missense_Mutation p.I251S 0.54 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PP-01 18 56149190 56149190 T C ALPK2 Silent p.K2126K 0.40 TCGA-UZ-A9PP-01 19 11944673 11944673 T A ZNF440 3'UTR 0.50 TCGA-UZ-A9PP-01 19 1418337 1418342 GCCAGC - DAZAP1 In_Frame_Del p.A69_S70del 0.31 TCGA-UZ-A9PP-01 19 15483755 15483755 G A AKAP8 Silent p.Y256Y 0.38 TCGA-UZ-A9PP-01 19 39897525 39897525 T C ZFP36 5'UTR 0.38 TCGA-UZ-A9PP-01 19 42482815 42482815 T A ATP1A3 Nonsense_Mutation p.K538* 0.47 TCGA-UZ-A9PP-01 19 45448498 45448498 G A APOC4 Missense_Mutation p.S107N 0.40 tolerated(0.09) benign(0.08) TCGA-UZ-A9PP-01 19 50714027 50714027 C T MYH14 Silent p.Y135Y 0.45 TCGA-UZ-A9PP-01 19 50714028 50714028 G C MYH14 Splice_Site p.X135_splice 0.45 TCGA-UZ-A9PP-01 19 5664085 5664085 T C SAFB Missense_Mutation p.Y736H 0.44 tolerated(0.11) unknown(0) TCGA-UZ-A9PP-01 19 58565303 58565303 G A ZSCAN1 Missense_Mutation p.V371M 0.45 tolerated(0.13) benign(0.041) TCGA-UZ-A9PP-01 19 6270658 6270658 C T MLLT1 Missense_Mutation p.C42Y 0.53 tolerated(0.28) benign(0.115) TCGA-UZ-A9PP-01 19 9064158 9064158 G C MUC16 Missense_Mutation p.T7763R 0.41 unknown(0) TCGA-UZ-A9PP-01 1 154987953 154987953 T A ZBTB7B Missense_Mutation p.Y307N 0.46 tolerated(0.3) possibly_damaging(0.635) TCGA-UZ-A9PP-01 1 158909320 158909320 T C PYHIN1 Intron 0.34 TCGA-UZ-A9PP-01 1 173921219 173921219 A G RC3H1 Missense_Mutation p.Y810H 0.41 deleterious(0) probably_damaging(0.914) TCGA-UZ-A9PP-01 1 18808387 18808387 C A KLHDC7A Silent p.G304G 0.46 TCGA-UZ-A9PP-01 1 204587083 204587083 G A LRRN2 Missense_Mutation p.R680W 0.38 deleterious(0) probably_damaging(0.981) TCGA-UZ-A9PP-01 1 228509045 228509045 G A OBSCN Missense_Mutation p.V5792I 0.29 benign(0.127) TCGA-UZ-A9PP-01 1 249152383 249152383 C A ZNF692 Missense_Mutation p.K47N 0.48 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PP-01 1 43224941 43224941 C T LEPRE1 Missense_Mutation p.E247K 0.05 deleterious(0.02) probably_damaging(0.984) TCGA-UZ-A9PP-01 1 6285207 6285207 T A ICMT Missense_Mutation p.Y263F 0.43 deleterious(0) probably_damaging(0.984) TCGA-UZ-A9PP-01 1 68151090 68151090 A G GADD45A 5'UTR 0.47 TCGA-UZ-A9PP-01 1 94048486 94048486 G C BCAR3 Missense_Mutation p.S353W 0.40 deleterious(0.02) possibly_damaging(0.532) TCGA-UZ-A9PP-01 20 13763764 13763765 - T ESF1 Frame_Shift_Ins p.M8Nfs*3 0.22 TCGA-UZ-A9PP-01 20 34459634 34459634 G C PHF20 Missense_Mutation p.G389R 0.52 deleterious(0.02) benign(0.27) TCGA-UZ-A9PP-01 20 43058428 43058428 A G HNF4A 3'UTR 0.56 TCGA-UZ-A9PP-01 20 43850357 43850357 A - SEMG2 Frame_Shift_Del p.G30Afs*42 0.34 TCGA-UZ-A9PP-01 20 61299859 61299859 C A SLCO4A1 Silent p.A614A 0.61 TCGA-UZ-A9PP-01 20 62193551 62193551 G C HELZ2 Missense_Mutation p.P2135A 0.25 tolerated(0.24) benign(0.006) TCGA-UZ-A9PP-01 21 34648956 34648956 T A IL10RB Missense_Mutation p.S77T 0.36 deleterious(0) probably_damaging(0.95) TCGA-UZ-A9PP-01 21 46896343 46896343 G A COL18A1 Missense_Mutation p.D473N 0.47 unknown(0) TCGA-UZ-A9PP-01 22 20104104 20104104 T C TRMT2A Missense_Mutation p.E19G 0.29 tolerated_low_confidence(0.22) benign(0.033) TCGA-UZ-A9PP-01 2 112686995 112686995 T G MERTK Silent p.P120P 0.35 TCGA-UZ-A9PP-01 2 167094694 167094694 G T SCN9A Missense_Mutation p.F1226L 0.37 deleterious(0) probably_damaging(0.997) TCGA-UZ-A9PP-01 2 176043935 176043935 A G ATP5G3 Missense_Mutation p.L55P 0.40 deleterious(0.04) benign(0.333) TCGA-UZ-A9PP-01 2 179644087 179644087 T A TTN Nonsense_Mutation p.K1278* 0.44 TCGA-UZ-A9PP-01 2 262676 262676 G C SH3YL1 Intron 0.44 TCGA-UZ-A9PP-01 2 54873419 54873419 T G SPTBN1 Missense_Mutation p.L1558R 0.05 tolerated(0.51) benign(0.068) TCGA-UZ-A9PP-01 2 86297161 86297161 G A POLR1A Nonsense_Mutation p.Q616* 0.42 TCGA-UZ-A9PP-01 2 86769412 86769412 T C RNF103-CHMP3 Missense_Mutation p.I52M 0.44 tolerated(0.18) benign(0.278) TCGA-UZ-A9PP-01 3 134076421 134076421 A T AMOTL2 3'UTR 0.81 TCGA-UZ-A9PP-01 3 183958875 183958899 CCACTGTTGTCTACTCTAAAGGTAA - VWA5B2 Splice_Site p.X981_splice 0.87 TCGA-UZ-A9PP-01 3 48309513 48309513 A G ZNF589 Missense_Mutation p.H111R 0.83 tolerated(0.26) benign(0.006) TCGA-UZ-A9PP-01 3 9860469 9860469 T G TTLL3 Intron 0.77 TCGA-UZ-A9PP-01 4 39460116 39460116 T A RPL9 5'UTR 0.15 TCGA-UZ-A9PP-01 5 135231460 135231460 C T IL9 Missense_Mutation p.V16M 0.30 tolerated(0.13) probably_damaging(0.963) TCGA-UZ-A9PP-01 5 145583374 145583374 T C RBM27 Silent p.L16L 0.33 TCGA-UZ-A9PP-01 5 178986972 178986972 T A RUFY1 Intron 0.50 TCGA-UZ-A9PP-01 5 179247935 179247935 C T SQSTM1 5'UTR 0.38 TCGA-UZ-A9PP-01 5 32789666 32789666 T C AC026703.1 Silent p.P53P 0.43 TCGA-UZ-A9PP-01 5 56557006 56557006 G A GPBP1 Splice_Site p.X394_splice 0.42 TCGA-UZ-A9PP-01 5 64100074 64100074 G T CWC27 Missense_Mutation p.A267S 0.09 tolerated(0.81) benign(0.003) TCGA-UZ-A9PP-01 6 12123780 12123781 - C HIVEP1 Frame_Shift_Ins p.H1252Pfs*2 0.32 TCGA-UZ-A9PP-01 6 1611180 1611180 T C FOXC1 Missense_Mutation p.F167S 0.19 deleterious(0) probably_damaging(0.979) TCGA-UZ-A9PP-01 6 168377132 168377132 G A RP3-470B24.5 RNA 0.05 TCGA-UZ-A9PP-01 6 29408295 29408295 G A OR10C1 Missense_Mutation p.C168Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PP-01 6 31379810 31379810 A T MICA Missense_Mutation p.N234Y 0.41 deleterious(0) probably_damaging(0.926) TCGA-UZ-A9PP-01 6 5086761 5086761 A G PPP1R3G Missense_Mutation p.T348A 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-UZ-A9PP-01 6 69772840 69772840 T A BAI3 Missense_Mutation p.I783N 0.47 tolerated(0.05) possibly_damaging(0.447) TCGA-UZ-A9PP-01 7 104742604 104742604 T G KMT2E Missense_Mutation p.L720R 0.28 tolerated(0.23) possibly_damaging(0.766) TCGA-UZ-A9PP-01 7 117368303 117368303 A G CTTNBP2 Missense_Mutation p.S1299P 0.06 tolerated(0.37) benign(0.003) TCGA-UZ-A9PP-01 7 123332492 123332492 A G WASL Missense_Mutation p.L419P 0.31 deleterious(0.03) probably_damaging(1) TCGA-UZ-A9PP-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-UZ-A9PP-01 7 20449400 20449400 A G ITGB8 Missense_Mutation p.K729R 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-UZ-A9PP-01 7 26240330 26240330 G T HNRNPA2B1 5'UTR 0.38 TCGA-UZ-A9PP-01 7 43917041 43917041 C A URGCP Missense_Mutation p.W674L 0.50 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PP-01 7 43966069 43966069 C T UBE2D4 5'UTR 0.50 TCGA-UZ-A9PP-01 7 75693752 75693752 A G MDH2 Silent p.G243G 0.47 TCGA-UZ-A9PP-01 8 23560587 23560587 G A NKX2-6 Silent p.L95L 0.91 TCGA-UZ-A9PP-01 8 28671112 28671112 A G INTS9 Missense_Mutation p.L169P 0.85 deleterious(0.01) probably_damaging(0.994) TCGA-UZ-A9PP-01 8 28671113 28671113 G A INTS9 Missense_Mutation p.L169F 0.85 tolerated(0.11) probably_damaging(0.991) TCGA-UZ-A9PP-01 8 73480085 73480085 T G KCNB2 Missense_Mutation p.I39S 0.75 deleterious(0) probably_damaging(0.925) TCGA-UZ-A9PP-01 9 100363301 100363301 A - TMOD1 3'UTR 0.30 TCGA-UZ-A9PP-01 9 134003031 134003031 G T NUP214 Missense_Mutation p.A56S 0.05 unknown(0) TCGA-UZ-A9PP-01 9 32488729 32488729 T C DDX58 Intron 0.38 TCGA-UZ-A9PP-01 9 37349376 37349376 A C ZCCHC7 Missense_Mutation p.K337T 0.43 deleterious(0.03) probably_damaging(0.931) TCGA-UZ-A9PP-01 9 97767897 97767897 A G C9orf3 Missense_Mutation p.K705R 0.36 tolerated(0.06) possibly_damaging(0.811) TCGA-UZ-A9PP-01 X 140335809 140335809 A G SPANXC Silent p.S45S 0.19 TCGA-UZ-A9PP-01 X 39930898 39930898 A G BCOR Missense_Mutation p.Y1015H 0.84 tolerated(0.07) possibly_damaging(0.815) TCGA-UZ-A9PR-01 10 18689938 18689938 A G CACNB2 Intron 0.43 TCGA-UZ-A9PR-01 10 75526876 75526876 G A SEC24C Missense_Mutation p.G653E 0.43 deleterious(0) probably_damaging(1) TCGA-UZ-A9PR-01 10 93667973 93667973 A C FGFBP3 Missense_Mutation p.F252V 0.39 deleterious(0) probably_damaging(0.992) TCGA-UZ-A9PR-01 11 10647633 10647633 T G MRVI1 Silent p.A416A 0.47 TCGA-UZ-A9PR-01 11 130281414 130281414 G A ADAMTS8 Missense_Mutation p.H550Y 0.47 tolerated(1) benign(0.009) TCGA-UZ-A9PR-01 11 32858352 32858352 G A PRRG4 Silent p.V84V 0.36 TCGA-UZ-A9PR-01 11 4599028 4599028 A G C11orf40 Missense_Mutation p.V8A 0.27 tolerated_low_confidence(1) benign(0.294) TCGA-UZ-A9PR-01 12 100452754 100452754 C G UHRF1BP1L Missense_Mutation p.K767N 0.39 deleterious(0.01) possibly_damaging(0.675) TCGA-UZ-A9PR-01 12 109526288 109526288 T A ALKBH2 Missense_Mutation p.E170V 0.39 deleterious(0) possibly_damaging(0.681) TCGA-UZ-A9PR-01 12 109687792 109687792 C A ACACB Nonsense_Mutation p.Y1891* 0.50 TCGA-UZ-A9PR-01 12 1995492 1995492 T G CACNA2D4 Missense_Mutation p.D297A 0.16 deleterious(0) probably_damaging(0.994) TCGA-UZ-A9PR-01 12 427414 427417 AAGT - KDM5A Frame_Shift_Del p.T918Wfs*4 0.30 TCGA-UZ-A9PR-01 12 48460721 48460721 C T SENP1 Nonsense_Mutation p.W341* 0.46 TCGA-UZ-A9PR-01 12 48460722 48460722 C T SENP1 Nonsense_Mutation p.W341* 0.46 TCGA-UZ-A9PR-01 12 49427988 49427988 T G KMT2D Silent p.V3534V 0.41 TCGA-UZ-A9PR-01 12 50149436 50149436 T C TMBIM6 Silent p.L120L 0.42 TCGA-UZ-A9PR-01 12 53895401 53895401 T A TARBP2 Intron 0.59 TCGA-UZ-A9PR-01 12 57346767 57346767 G T RDH16 Missense_Mutation p.L194I 0.05 tolerated(0.12) benign(0.232) TCGA-UZ-A9PR-01 12 58009476 58009476 T C ARHGEF25 Missense_Mutation p.V446A 0.43 tolerated(0.22) benign(0.028) TCGA-UZ-A9PR-01 12 69666756 69666756 A T CPSF6 3'UTR 0.45 TCGA-UZ-A9PR-01 12 9221412 9221412 G C A2M Missense_Mutation p.F1430L 0.36 deleterious(0) benign(0.002) TCGA-UZ-A9PR-01 12 96354188 96354188 T C AMDHD1 Silent p.A200A 0.46 TCGA-UZ-A9PR-01 13 47408978 47408978 A G HTR2A Silent p.C470C 0.37 TCGA-UZ-A9PR-01 14 20345243 20345243 G C OR4K2 Missense_Mutation p.V273L 0.57 deleterious(0.03) possibly_damaging(0.856) TCGA-UZ-A9PR-01 14 24780907 24780907 G A LTB4R2 Missense_Mutation p.G346E 0.46 tolerated(0.08) probably_damaging(0.999) TCGA-UZ-A9PR-01 14 45654450 45654450 G A FANCM Missense_Mutation p.A1516T 0.41 deleterious(0) probably_damaging(0.922) TCGA-UZ-A9PR-01 14 68191956 68191956 G A RDH12 Missense_Mutation p.E110K 0.38 tolerated(0.79) benign(0.243) TCGA-UZ-A9PR-01 14 71568714 71568714 T A PCNX Missense_Mutation p.F1866Y 0.52 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PR-01 14 94492824 94492824 C A OTUB2 5'UTR 0.44 TCGA-UZ-A9PR-01 14 94528900 94528900 A G DDX24 Silent p.N262N 0.47 TCGA-UZ-A9PR-01 15 41672439 41672439 A G NUSAP1 3'UTR 0.37 TCGA-UZ-A9PR-01 15 45003740 45003740 C A B2M 5'UTR 0.28 TCGA-UZ-A9PR-01 15 48429007 48429007 G A SLC24A5 Missense_Mutation p.E240K 0.42 deleterious(0.01) benign(0.004) TCGA-UZ-A9PR-01 15 64972427 64972427 C T ZNF609 Silent p.S1271S 0.46 TCGA-UZ-A9PR-01 15 72175994 72175994 G A MYO9A Missense_Mutation p.S1780L 0.53 deleterious(0.02) benign(0.089) TCGA-UZ-A9PR-01 15 86123313 86123313 G T AKAP13 Missense_Mutation p.V672L 0.47 tolerated_low_confidence(0.08) benign(0.359) TCGA-UZ-A9PR-01 15 91017793 91017793 G A IQGAP1 Silent p.Q884Q 0.49 TCGA-UZ-A9PR-01 16 1453166 1453166 C A UNKL Intron 0.86 TCGA-UZ-A9PR-01 16 19132310 19132310 C T ITPRIPL2 3'UTR 0.55 TCGA-UZ-A9PR-01 16 23569083 23569083 C T UBFD1 Missense_Mutation p.P7L 0.48 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-UZ-A9PR-01 16 25255502 25255502 T C ZKSCAN2 Missense_Mutation p.K529E 0.40 deleterious(0) probably_damaging(0.976) TCGA-UZ-A9PR-01 16 28164063 28164063 C A XPO6 Missense_Mutation p.V381F 0.43 deleterious(0.01) probably_damaging(0.923) TCGA-UZ-A9PR-01 16 80638272 80638272 G T CDYL2 3'UTR 0.56 TCGA-UZ-A9PR-01 16 86614541 86614541 G - FOXL1 3'UTR 0.33 TCGA-UZ-A9PR-01 17 1628392 1628392 C T WDR81 Missense_Mutation p.P47S 0.25 tolerated(0.41) benign(0.22) TCGA-UZ-A9PR-01 17 18281178 18281178 G A EVPLL 5'UTR 0.76 TCGA-UZ-A9PR-01 17 2598316 2598316 G A CLUH Missense_Mutation p.A857V 0.29 tolerated(0.23) benign(0.014) TCGA-UZ-A9PR-01 17 26096089 26096089 C G NOS2 Missense_Mutation p.A650P 0.57 deleterious(0) probably_damaging(1) TCGA-UZ-A9PR-01 17 33903054 33903054 A G PEX12 Missense_Mutation p.L276S 0.27 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PR-01 17 39659323 39659323 C - KRT13 Frame_Shift_Del p.V255Sfs*16 0.19 TCGA-UZ-A9PR-01 17 5462741 5462741 C G NLRP1 Missense_Mutation p.E425D 0.59 tolerated(0.07) possibly_damaging(0.897) TCGA-UZ-A9PR-01 17 60043908 60043908 T A MED13 Silent p.A1432A 0.26 TCGA-UZ-A9PR-01 17 79409497 79409497 C A RP11-1055B8.7 Missense_Mutation p.D374E 0.31 benign(0.033) TCGA-UZ-A9PR-01 18 21523876 21523876 G A LAMA3 Missense_Mutation p.D3051N 0.50 benign(0.191) TCGA-UZ-A9PR-01 18 44635149 44635149 A C HDHD2 Nonsense_Mutation p.Y228* 0.49 TCGA-UZ-A9PR-01 19 23578195 23578195 C T ZNF91 5'UTR 0.54 TCGA-UZ-A9PR-01 19 36037600 36037600 G T TMEM147 Silent p.V78V 0.35 TCGA-UZ-A9PR-01 19 36037611 36037611 T A TMEM147 Missense_Mutation p.I82K 0.32 deleterious(0.04) benign(0.378) TCGA-UZ-A9PR-01 19 36037612 36037612 A T TMEM147 Silent p.I82I 0.32 TCGA-UZ-A9PR-01 19 48024300 48024300 G T ZNF541 3'UTR 0.46 TCGA-UZ-A9PR-01 19 50243159 50243159 G T TSKS Missense_Mutation p.H551Q 0.45 tolerated(0.2) probably_damaging(0.997) TCGA-UZ-A9PR-01 19 50461600 50461600 G A SIGLEC11 Missense_Mutation p.R531C 0.11 deleterious(0.03) benign(0.003) TCGA-UZ-A9PR-01 1 113231535 113231535 C G MOV10 Intron 0.52 TCGA-UZ-A9PR-01 1 11847874 11847874 A C MTHFR 3'UTR 0.48 TCGA-UZ-A9PR-01 1 1426049 1426049 C T ATAD3B Nonsense_Mutation p.Q538* 0.36 TCGA-UZ-A9PR-01 1 149907546 149907546 T C MTMR11 Silent p.E65E 0.39 TCGA-UZ-A9PR-01 1 156303343 156303343 A G CCT3 Missense_Mutation p.I100T 0.48 deleterious(0) possibly_damaging(0.769) TCGA-UZ-A9PR-01 1 160460386 160460386 G A SLAMF6 Missense_Mutation p.L246F 0.43 tolerated(0.7) benign(0.192) TCGA-UZ-A9PR-01 1 16374535 16374535 A C CLCNKB Missense_Mutation p.K165T 0.27 deleterious(0) probably_damaging(0.955) TCGA-UZ-A9PR-01 1 174247864 174247864 T C RABGAP1L Missense_Mutation p.W424R 0.42 deleterious(0) probably_damaging(0.996) TCGA-UZ-A9PR-01 1 175087824 175087824 C T TNN Silent p.T838T 0.43 TCGA-UZ-A9PR-01 1 175105980 175105980 A T TNN Missense_Mutation p.T1151S 0.41 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PR-01 1 204380034 204380034 G T PPP1R15B Missense_Mutation p.P169H 0.35 deleterious(0) probably_damaging(0.933) TCGA-UZ-A9PR-01 1 20881262 20881262 G T FAM43B 3'UTR 0.07 TCGA-UZ-A9PR-01 1 23697974 23697974 C A C1orf213 3'UTR 0.48 TCGA-UZ-A9PR-01 1 59165666 59165666 G T MYSM1 Missense_Mutation p.A20E 0.32 tolerated(0.39) benign(0.007) TCGA-UZ-A9PR-01 1 78426050 78426050 C G FUBP1 Missense_Mutation p.G492A 0.42 tolerated(0.11) unknown(0) TCGA-UZ-A9PR-01 20 24964632 24964632 C T APMAP Missense_Mutation p.R40Q 0.42 tolerated(0.17) benign(0.002) TCGA-UZ-A9PR-01 20 34778552 34778552 C G EPB41L1 Missense_Mutation p.S378C 0.07 deleterious(0.03) benign(0.383) TCGA-UZ-A9PR-01 20 39794853 39794854 CA - PLCG1 Frame_Shift_Del p.H607Lfs*23 0.21 TCGA-UZ-A9PR-01 20 44163124 44163139 ATGGTATAAAGTAAGG - WFDC6 Frame_Shift_Del p.S76Rfs*24 0.34 TCGA-UZ-A9PR-01 20 60718878 60718878 T C SS18L1 Translation_Start_Site p.M1? 0.51 deleterious(0) possibly_damaging(0.885) TCGA-UZ-A9PR-01 20 62701500 62701500 G T TCEA2 Intron 0.45 TCGA-UZ-A9PR-01 20 8626784 8626784 C T PLCB1 Silent p.N140N 0.53 TCGA-UZ-A9PR-01 21 19701538 19701538 A G TMPRSS15 Silent p.I576I 0.51 TCGA-UZ-A9PR-01 21 19701570 19701570 G A TMPRSS15 Missense_Mutation p.L566F 0.42 deleterious(0.01) probably_damaging(1) TCGA-UZ-A9PR-01 21 34901233 34901233 T A GART Missense_Mutation p.D245V 0.28 tolerated(0.2) benign(0.05) TCGA-UZ-A9PR-01 21 34901234 34901234 C T GART Missense_Mutation p.D245N 0.28 tolerated(0.15) benign(0.269) TCGA-UZ-A9PR-01 21 47538955 47538955 C T COL6A2 Silent p.G397G 0.33 TCGA-UZ-A9PR-01 21 47917012 47917012 C T DIP2A Missense_Mutation p.T132I 0.37 deleterious(0) probably_damaging(0.969) TCGA-UZ-A9PR-01 22 18769238 18769238 T C GGT3P RNA 0.10 TCGA-UZ-A9PR-01 22 21153483 21153483 C A PI4KA Missense_Mutation p.M634I 0.42 tolerated(0.46) benign(0.032) TCGA-UZ-A9PR-01 22 23964292 23964292 C A C22orf43 Missense_Mutation p.D124Y 0.25 deleterious_low_confidence(0.01) benign(0.084) TCGA-UZ-A9PR-01 22 31816283 31816283 C T DRG1 Silent p.L152L 0.52 TCGA-UZ-A9PR-01 22 47287237 47287248 GAGCACTATTAC - TBC1D22A In_Frame_Del p.E262_Y265del 0.24 TCGA-UZ-A9PR-01 2 169985004 169985004 T C LRP2 3'UTR 0.50 TCGA-UZ-A9PR-01 2 27305967 27305967 C T EMILIN1 Nonsense_Mutation p.Q510* 0.11 TCGA-UZ-A9PR-01 2 54040085 54040085 G C ERLEC1 Splice_Site p.X368_splice 0.40 TCGA-UZ-A9PR-01 2 74755400 74755400 C T AUP1 Missense_Mutation p.V216I 0.55 tolerated(0.19) benign(0.199) TCGA-UZ-A9PR-01 2 86327239 86327239 G A POLR1A Missense_Mutation p.P45L 0.41 deleterious(0.02) possibly_damaging(0.85) TCGA-UZ-A9PR-01 2 96557417 96557417 C G ANKRD36C Missense_Mutation p.R372S 0.38 tolerated(0.15) benign(0.125) TCGA-UZ-A9PR-01 3 148930300 148930300 T - CP Frame_Shift_Del p.N111Tfs*14 0.30 TCGA-UZ-A9PR-01 3 193175211 193175211 G A ATP13A4 Missense_Mutation p.P573L 0.42 tolerated(0.07) benign(0.017) TCGA-UZ-A9PR-01 3 43389082 43389082 G - SNRK Frame_Shift_Del p.V445Wfs*29 0.31 TCGA-UZ-A9PR-01 3 4824382 4824382 C T ITPR1 Missense_Mutation p.S2141F 0.47 deleterious(0) probably_damaging(0.997) TCGA-UZ-A9PR-01 3 49114436 49114436 T C QRICH1 Silent p.L5L 0.42 TCGA-UZ-A9PR-01 3 62278935 62278935 A T PTPRG Missense_Mutation p.I1431F 0.46 tolerated(0.09) benign(0.1) TCGA-UZ-A9PR-01 3 62739258 62739258 T C CADPS Missense_Mutation p.E249G 0.35 deleterious(0.02) benign(0.403) TCGA-UZ-A9PR-01 4 186318032 186318032 C A ANKRD37 5'UTR 0.38 TCGA-UZ-A9PR-01 4 24878300 24878300 T - CCDC149 Frame_Shift_Del p.K28Sfs*10 0.23 TCGA-UZ-A9PR-01 4 40122134 40122134 A - N4BP2 Frame_Shift_Del p.R803Gfs*25 0.28 TCGA-UZ-A9PR-01 4 41621302 41621303 GA - LIMCH1 Frame_Shift_Del p.K261Ifs*6 0.29 TCGA-UZ-A9PR-01 4 62598714 62598715 GT - LPHN3 Frame_Shift_Del p.Y214* 0.41 TCGA-UZ-A9PR-01 4 72423545 72423545 T C SLC4A4 Silent p.C960C 0.39 TCGA-UZ-A9PR-01 5 139495567 139495567 A G PURA 3'UTR 0.36 TCGA-UZ-A9PR-01 5 148421039 148421039 G A SH3TC2 Missense_Mutation p.T224I 0.46 deleterious(0) possibly_damaging(0.796) TCGA-UZ-A9PR-01 5 149375763 149375765 TCC - TIGD6 In_Frame_Del p.K49_D50delinsN 0.33 TCGA-UZ-A9PR-01 5 1501608 1501608 C A LPCAT1 Missense_Mutation p.K82N 0.49 tolerated(0.08) benign(0.002) TCGA-UZ-A9PR-01 6 123124850 123124850 A C SMPDL3A Silent p.R204R 0.35 TCGA-UZ-A9PR-01 6 152510469 152510469 G A SYNE1 Missense_Mutation p.A7740V 0.49 benign(0.002) TCGA-UZ-A9PR-01 6 157495180 157495180 T C ARID1B Missense_Mutation p.S1022P 0.55 benign(0.036) TCGA-UZ-A9PR-01 6 27278778 27278779 GG - POM121L2 Frame_Shift_Del p.P391Ffs*88 0.28 TCGA-UZ-A9PR-01 6 28539881 28539881 T C SCAND3 Missense_Mutation p.E1262G 0.35 deleterious_low_confidence(0.03) benign(0.067) TCGA-UZ-A9PR-01 6 3268011 3268011 T A PSMG4 3'UTR 0.50 TCGA-UZ-A9PR-01 6 36298150 36298150 G AA C6orf222 Frame_Shift_Ins p.V108Rfs*6 0.33 TCGA-UZ-A9PR-01 6 74124404 74124404 A C DDX43 Missense_Mutation p.R580S 0.41 deleterious(0) probably_damaging(0.991) TCGA-UZ-A9PR-01 6 82950058 82950058 T C IBTK Missense_Mutation p.D49G 0.42 deleterious(0) probably_damaging(1) TCGA-UZ-A9PR-01 7 128626881 128626881 C A TNPO3 Missense_Mutation p.R531L 0.23 tolerated(0.24) possibly_damaging(0.757) TCGA-UZ-A9PR-01 7 153750140 153750140 G A DPP6 Missense_Mutation p.E79K 0.13 tolerated(0.36) benign(0.022) TCGA-UZ-A9PR-01 7 23544986 23544986 A C TRA2A 3'UTR 0.70 TCGA-UZ-A9PR-01 7 48139322 48139322 C A UPP1 Missense_Mutation p.L34I 0.24 deleterious(0) probably_damaging(0.987) TCGA-UZ-A9PR-01 7 98257796 98257796 G A NPTX2 Missense_Mutation p.R384H 0.21 tolerated(0.06) benign(0.035) TCGA-UZ-A9PR-01 8 10396206 10396206 G A PRSS55 Missense_Mutation p.G321D 0.47 tolerated(0.75) benign(0.003) TCGA-UZ-A9PR-01 8 10468692 10468692 T C RP1L1 Silent p.T972T 0.47 TCGA-UZ-A9PR-01 8 143558843 143558843 G A BAI1 Silent p.Q440Q 0.39 TCGA-UZ-A9PR-01 8 25177162 25177162 C T DOCK5 Silent p.V504V 0.41 TCGA-UZ-A9PR-01 8 39691500 39691500 T A ADAM2 Missense_Mutation p.I51F 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-UZ-A9PR-01 8 42275393 42275393 G T SLC20A2 Silent p.T629T 0.46 TCGA-UZ-A9PR-01 8 61778469 61778469 G A CHD7 Missense_Mutation p.E2991K 0.42 unknown(0) TCGA-UZ-A9PR-01 8 8860566 8860566 C G ERI1 5'UTR 0.46 TCGA-UZ-A9PR-01 8 96259954 96259954 T A C8orf37 Missense_Mutation p.K172M 0.51 deleterious(0.03) probably_damaging(0.938) TCGA-UZ-A9PR-01 8 99168546 99168546 G T POP1 Missense_Mutation p.G776W 0.42 deleterious(0.02) possibly_damaging(0.825) TCGA-UZ-A9PR-01 9 132630512 132630512 G C USP20 Missense_Mutation p.A307P 0.39 tolerated(0.26) benign(0.021) TCGA-UZ-A9PR-01 9 35066717 35066717 A T VCP Missense_Mutation p.Y134N 0.40 deleterious(0.02) probably_damaging(1) TCGA-UZ-A9PR-01 9 35805967 35805967 G C NPR2 Missense_Mutation p.D730H 0.34 deleterious(0.05) benign(0.056) TCGA-UZ-A9PR-01 9 36966620 36966620 C T PAX5 Missense_Mutation p.V236M 0.47 deleterious(0) probably_damaging(0.95) TCGA-UZ-A9PR-01 X 44008117 44008117 A T EFHC2 Missense_Mutation p.M725K 0.92 tolerated(0.91) benign(0.005) TCGA-UZ-A9PR-01 X 46713208 46713208 C A RP2 Missense_Mutation p.Q134K 0.07 tolerated(0.08) benign(0.195) TCGA-UZ-A9PR-01 X 48558807 48558807 A G SUV39H1 Missense_Mutation p.N164S 0.93 deleterious(0.03) possibly_damaging(0.673) TCGA-UZ-A9PS-01 10 115964611 115964611 A T TDRD1 Missense_Mutation p.E419V 0.39 deleterious(0.01) benign(0.001) TCGA-UZ-A9PS-01 10 11998440 11998440 T A UPF2 Missense_Mutation p.N818I 0.42 deleterious(0) possibly_damaging(0.605) TCGA-UZ-A9PS-01 10 11998442 11998442 C A UPF2 Missense_Mutation p.W817C 0.44 deleterious(0) possibly_damaging(0.583) TCGA-UZ-A9PS-01 10 50679145 50679146 - A ERCC6 Frame_Shift_Ins p.L982Ffs*4 0.33 TCGA-UZ-A9PS-01 10 69918255 69918255 T A MYPN Missense_Mutation p.L444M 0.37 tolerated(0.07) benign(0.262) TCGA-UZ-A9PS-01 10 70048330 70048330 T A PBLD Nonsense_Mutation p.K201* 0.33 TCGA-UZ-A9PS-01 10 70451494 70451494 T G TET1 Missense_Mutation p.L2112V 0.40 tolerated(0.51) possibly_damaging(0.888) TCGA-UZ-A9PS-01 10 75532064 75532064 C G AC022400.2 Silent p.S105S 0.36 TCGA-UZ-A9PS-01 10 77795776 77795776 G A C10orf11 Missense_Mutation p.G20R 0.33 deleterious(0.02) possibly_damaging(0.712) TCGA-UZ-A9PS-01 10 98380246 98380246 T C PIK3AP1 Missense_Mutation p.T602A 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-UZ-A9PS-01 11 102195478 102195478 G T BIRC3 Missense_Mutation p.D80Y 0.11 deleterious(0) probably_damaging(0.996) TCGA-UZ-A9PS-01 11 108236079 108236079 A T ATM Silent p.V3005V 0.73 TCGA-UZ-A9PS-01 11 118532381 118532381 C T TREH Silent p.K194K 0.39 TCGA-UZ-A9PS-01 11 11977899 11977899 G A USP47 3'UTR 0.38 TCGA-UZ-A9PS-01 11 134014786 134014786 A C JAM3 Missense_Mutation p.H170P 0.42 tolerated(0.11) benign(0.317) TCGA-UZ-A9PS-01 11 14991618 14991618 A T CALCA Silent p.S30S 0.38 TCGA-UZ-A9PS-01 11 17629915 17629915 A - OTOG Frame_Shift_Del p.T1423Pfs*16 0.21 TCGA-UZ-A9PS-01 11 205271 205271 T C BET1L 3'UTR 0.05 TCGA-UZ-A9PS-01 11 31454087 31454087 A - IMMP1L Frame_Shift_Del p.L154Yfs*20 0.26 TCGA-UZ-A9PS-01 11 57507704 57507704 A G TMX2 Missense_Mutation p.K293R 0.45 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PS-01 11 61183972 61183972 A G CPSF7 Silent p.H233H 0.38 TCGA-UZ-A9PS-01 11 62648555 62648556 - A SLC3A2 Frame_Shift_Ins p.Q124Afs*38 0.25 TCGA-UZ-A9PS-01 11 73602239 73602239 C T PAAF1 Missense_Mutation p.T92I 0.33 tolerated(0.18) benign(0.018) TCGA-UZ-A9PS-01 11 74915579 74915579 T C SLCO2B1 Missense_Mutation p.L695S 0.33 tolerated_low_confidence(0.77) benign(0.011) TCGA-UZ-A9PS-01 12 110295370 110295370 G A GLTP Missense_Mutation p.P86L 0.57 tolerated(0.09) benign(0.294) TCGA-UZ-A9PS-01 12 110386505 110386505 T - GIT2 Intron 0.35 TCGA-UZ-A9PS-01 12 121434509 121434509 A C HNF1A Missense_Mutation p.T425P 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-UZ-A9PS-01 12 122260973 122260973 G T SETD1B Silent p.A1453A 0.34 TCGA-UZ-A9PS-01 12 122340948 122340948 T A PSMD9 Missense_Mutation p.S164T 0.59 tolerated(0.06) possibly_damaging(0.85) TCGA-UZ-A9PS-01 12 123984011 123984011 C T RILPL1 Missense_Mutation p.R178H 0.50 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PS-01 12 130921476 130921476 G T RIMBP2 Missense_Mutation p.L656M 0.60 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PS-01 12 133291557 133291557 T A PGAM5 Missense_Mutation p.L102H 0.24 deleterious(0) probably_damaging(1) TCGA-UZ-A9PS-01 12 41387017 41387017 C G CNTN1 Missense_Mutation p.L687V 0.35 deleterious(0.01) probably_damaging(0.951) TCGA-UZ-A9PS-01 12 53188110 53188110 C A KRT3 Silent p.R217R 0.46 TCGA-UZ-A9PS-01 12 54059109 54059109 A G ATP5G2 Missense_Mutation p.F196L 0.36 deleterious(0.01) possibly_damaging(0.873) TCGA-UZ-A9PS-01 12 64860793 64860793 T G TBK1 Missense_Mutation p.D157E 0.33 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PS-01 13 100172311 100172311 A - TM9SF2 Frame_Shift_Del p.E88Kfs*52 0.08 TCGA-UZ-A9PS-01 13 78474675 78474675 T G EDNRB Missense_Mutation p.N446H 0.38 tolerated(0.07) benign(0.029) TCGA-UZ-A9PS-01 14 100758470 100758470 A C SLC25A29 3'UTR 0.50 TCGA-UZ-A9PS-01 14 24683307 24683307 G C MDP1 Missense_Mutation p.Q152E 0.50 tolerated(1) benign(0.001) TCGA-UZ-A9PS-01 14 74206226 74206226 A T ELMSAN1 Silent p.P162P 0.43 TCGA-UZ-A9PS-01 14 74426189 74426189 T C COQ6 Silent p.D285D 0.44 TCGA-UZ-A9PS-01 14 92041227 92041227 G T AL133373.1 5'UTR 0.43 TCGA-UZ-A9PS-01 14 94722854 94722854 T C PPP4R4 Silent p.D641D 0.43 TCGA-UZ-A9PS-01 15 43714077 43714077 G C TP53BP1 Missense_Mutation p.S1359C 0.49 deleterious(0.01) possibly_damaging(0.885) TCGA-UZ-A9PS-01 15 74367330 74367333 GATG AT GOLGA6A Frame_Shift_Del p.P286Hfs*17 0.39 TCGA-UZ-A9PS-01 15 85165153 85165153 A G ZSCAN2 Missense_Mutation p.H576R 0.52 deleterious(0) probably_damaging(0.99) TCGA-UZ-A9PS-01 15 89861981 89861981 C G POLG Splice_Site p.X1092_splice 0.29 TCGA-UZ-A9PS-01 15 93595536 93595536 C G RGMA Missense_Mutation p.S119T 0.42 tolerated(0.61) benign(0.015) TCGA-UZ-A9PS-01 16 68405641 68405641 T C SMPD3 Silent p.Q148Q 0.49 TCGA-UZ-A9PS-01 16 68405649 68405649 T G SMPD3 Missense_Mutation p.N146H 0.52 tolerated(0.6) benign(0.031) TCGA-UZ-A9PS-01 16 81219237 81219237 C A PKD1L2 5'Flank 0.58 TCGA-UZ-A9PS-01 17 17380470 17380470 C T MED9 Missense_Mutation p.P39S 0.48 tolerated_low_confidence(0.64) benign(0) TCGA-UZ-A9PS-01 17 27447772 27447772 C T MYO18A Silent p.E530E 0.27 TCGA-UZ-A9PS-01 17 36482812 36482812 T A GPR179 Missense_Mutation p.M2214L 0.57 tolerated(0.37) benign(0) TCGA-UZ-A9PS-01 17 4343008 4343008 G C SPNS3 Missense_Mutation p.L85F 0.33 deleterious(0.02) benign(0.35) TCGA-UZ-A9PS-01 17 61574262 61574262 C G ACE Missense_Mutation p.P1203A 0.56 deleterious(0) probably_damaging(0.997) TCGA-UZ-A9PS-01 17 62271048 62271048 G T TEX2 Silent p.R683R 0.64 TCGA-UZ-A9PS-01 17 64728827 64728827 G - PRKCA Frame_Shift_Del p.G314Afs*21 0.22 TCGA-UZ-A9PS-01 17 66918423 66918423 T G ABCA8 Missense_Mutation p.K487N 0.29 deleterious(0) probably_damaging(0.95) TCGA-UZ-A9PS-01 18 20815956 20815956 T C CABLES1 Missense_Mutation p.L428P 0.29 tolerated(0.15) benign(0.006) TCGA-UZ-A9PS-01 18 2728547 2728547 G A SMCHD1 Missense_Mutation p.E956K 0.44 tolerated(0.17) benign(0.213) TCGA-UZ-A9PS-01 18 29178600 29178600 T G TTR Missense_Mutation p.Y136D 0.33 deleterious(0) probably_damaging(1) TCGA-UZ-A9PS-01 18 77918046 77918046 C T PARD6G Missense_Mutation p.V247I 0.06 deleterious(0.02) possibly_damaging(0.885) TCGA-UZ-A9PS-01 19 12693704 12693704 C G ZNF490 Missense_Mutation p.D104H 0.10 deleterious(0.02) benign(0.024) TCGA-UZ-A9PS-01 19 18960968 18960968 G T UPF1 Missense_Mutation p.E182D 0.46 deleterious(0) probably_damaging(0.967) TCGA-UZ-A9PS-01 19 20235841 20235841 A G CTC-260E6.2 RNA 0.36 TCGA-UZ-A9PS-01 19 2216297 2216297 A T DOT1L Silent p.L647L 0.46 TCGA-UZ-A9PS-01 19 37038652 37038652 T A ZNF529 Missense_Mutation p.T270S 0.47 tolerated(0.11) benign(0.003) TCGA-UZ-A9PS-01 19 37677880 37677880 T G ZNF585B Missense_Mutation p.K187Q 0.44 tolerated(0.11) benign(0.003) TCGA-UZ-A9PS-01 19 49364695 49364695 C T PLEKHA4 Missense_Mutation p.G110E 0.52 tolerated(0.11) probably_damaging(1) TCGA-UZ-A9PS-01 19 50304776 50304776 C T AP2A1 Silent p.G561G 0.12 TCGA-UZ-A9PS-01 19 50369653 50369653 T C PNKP Intron 0.41 TCGA-UZ-A9PS-01 19 55179542 55179542 A G LILRB4 3'UTR 0.37 TCGA-UZ-A9PS-01 19 5784273 5784273 T C CTB-54O9.9 3'UTR 0.53 TCGA-UZ-A9PS-01 19 57955392 57955392 C T ZNF749 Silent p.L292L 0.39 TCGA-UZ-A9PS-01 19 5921298 5921298 G A RANBP3 Missense_Mutation p.S415L 0.41 deleterious(0.03) probably_damaging(0.961) TCGA-UZ-A9PS-01 19 9049050 9049050 A C MUC16 Missense_Mutation p.S10861A 0.39 possibly_damaging(0.486) TCGA-UZ-A9PS-01 19 984377 984377 C T WDR18 Silent p.A8A 0.04 TCGA-UZ-A9PS-01 1 11008797 11008797 A - C1orf127 Frame_Shift_Del p.P467Qfs*21 0.30 TCGA-UZ-A9PS-01 1 11009850 11009850 G A C1orf127 Missense_Mutation p.A374V 0.40 tolerated(0.14) probably_damaging(0.971) TCGA-UZ-A9PS-01 1 12337939 12337939 T C VPS13D Missense_Mutation p.Y1432H 0.36 probably_damaging(0.983) TCGA-UZ-A9PS-01 1 1249323 1249323 A T CPSF3L Intron 0.45 TCGA-UZ-A9PS-01 1 14105779 14105779 A G PRDM2 Missense_Mutation p.N497D 0.04 probably_damaging(1) TCGA-UZ-A9PS-01 1 150337371 150337371 C A RPRD2 Missense_Mutation p.H61N 0.33 tolerated_low_confidence(0.05) benign(0.154) TCGA-UZ-A9PS-01 1 160125832 160125832 C T ATP1A4 Intron 0.35 TCGA-UZ-A9PS-01 1 181765855 181765855 A C CACNA1E Missense_Mutation p.K2087T 0.36 deleterious(0.01) possibly_damaging(0.775) TCGA-UZ-A9PS-01 1 20220906 20220906 T C OTUD3 Missense_Mutation p.I139T 0.47 deleterious(0) probably_damaging(1) TCGA-UZ-A9PS-01 1 20220910 20220910 A G OTUD3 Silent p.V140V 0.49 TCGA-UZ-A9PS-01 1 205797581 205797581 T C PM20D1 3'UTR 0.67 TCGA-UZ-A9PS-01 1 2125123 2125123 G T C1orf86 Missense_Mutation p.A142E 0.41 tolerated(0.5) benign(0.197) TCGA-UZ-A9PS-01 1 215853630 215853630 A C USH2A Missense_Mutation p.I4052S 0.46 benign(0.045) TCGA-UZ-A9PS-01 1 22041910 22041910 A T USP48 Missense_Mutation p.N645K 0.39 tolerated(0.55) benign(0.021) TCGA-UZ-A9PS-01 1 228525744 228525744 G A OBSCN Missense_Mutation p.A6591T 0.30 benign(0.384) TCGA-UZ-A9PS-01 1 229606482 229606482 A T NUP133 Missense_Mutation p.C641S 0.46 tolerated(0.13) probably_damaging(0.966) TCGA-UZ-A9PS-01 1 247094665 247094665 A C AHCTF1 5'UTR 0.46 TCGA-UZ-A9PS-01 1 26140664 26140664 A T SEPN1 Missense_Mutation p.T533S 0.31 tolerated(0.09) benign(0.038) TCGA-UZ-A9PS-01 1 28904220 28904239 CTTTTTGGAAATATGATTTG - TRNAU1AP 3'UTR 0.33 TCGA-UZ-A9PS-01 1 41236909 41236909 C T NFYC 3'Flank 0.50 TCGA-UZ-A9PS-01 1 43906920 43906920 A T SZT2 Missense_Mutation p.K2403N 0.48 deleterious(0.01) probably_damaging(0.971) TCGA-UZ-A9PS-01 1 45278689 45278689 G A BTBD19 Missense_Mutation p.G146R 0.38 tolerated(0.59) benign(0.005) TCGA-UZ-A9PS-01 1 55307754 55307754 C A C1orf177 3'UTR 0.50 TCGA-UZ-A9PS-01 1 6520969 6520969 C T ESPN 3'UTR 0.55 TCGA-UZ-A9PS-01 20 25460838 25460838 T G NINL Missense_Mutation p.K626Q 0.35 deleterious(0) possibly_damaging(0.78) TCGA-UZ-A9PS-01 20 31413759 31413764 CAGTGA - MAPRE1 In_Frame_Del p.V10_T11del 0.49 TCGA-UZ-A9PS-01 20 33730267 33730267 G T EDEM2 Silent p.V91V 0.54 TCGA-UZ-A9PS-01 20 37356467 37356468 - C SLC32A1 Frame_Shift_Ins p.F256Lfs*3 0.29 TCGA-UZ-A9PS-01 20 43580553 43580553 C T TOMM34 Silent p.R157R 0.41 TCGA-UZ-A9PS-01 21 16337481 16337481 A T NRIP1 Missense_Mutation p.S1011R 0.47 tolerated(0.09) possibly_damaging(0.53) TCGA-UZ-A9PS-01 21 16337482 16337482 C A NRIP1 Missense_Mutation p.S1011I 0.48 deleterious(0.01) benign(0.368) TCGA-UZ-A9PS-01 21 37732306 37732306 A C MORC3 Missense_Mutation p.K421T 0.38 deleterious(0) probably_damaging(0.938) TCGA-UZ-A9PS-01 21 39755211 39755211 C A ERG 3'UTR 0.53 TCGA-UZ-A9PS-01 21 40978243 40978243 C A C21orf88 Intron 0.46 TCGA-UZ-A9PS-01 21 45970664 45970664 T C KRTAP10-2 Silent p.R226R 0.39 TCGA-UZ-A9PS-01 21 47545867 47545879 GCCTCATCAAGGA C COL6A2 In_Frame_Del p.R713_E717delinsP 0.31 TCGA-UZ-A9PS-01 22 22930648 22930648 G - IGLV2-33 5'UTR 0.16 TCGA-UZ-A9PS-01 22 39388713 39388713 A G APOBEC3B 3'UTR 0.27 TCGA-UZ-A9PS-01 22 39639986 39639986 C G PDGFB 5'UTR 0.49 TCGA-UZ-A9PS-01 22 41973227 41973227 A G PMM1 3'UTR 0.50 TCGA-UZ-A9PS-01 22 43089135 43089143 CGCGGCAGG - A4GALT In_Frame_Del p.A272_R274del 0.29 TCGA-UZ-A9PS-01 22 47507468 47507468 G C TBC1D22A Missense_Mutation p.R465T 0.33 deleterious(0.02) probably_damaging(0.927) TCGA-UZ-A9PS-01 22 50187854 50187854 G C BRD1 Missense_Mutation p.C729W 0.48 deleterious(0.03) possibly_damaging(0.8) TCGA-UZ-A9PS-01 22 50596747 50596747 T G MOV10L1 Intron 0.35 TCGA-UZ-A9PS-01 2 136396355 136396355 T - R3HDM1 Frame_Shift_Del p.F330Lfs*23 0.28 TCGA-UZ-A9PS-01 2 171570019 171570019 T C LINC01124 3'UTR 0.48 TCGA-UZ-A9PS-01 2 179997038 179997038 T G SESTD1 Missense_Mutation p.Q322P 0.36 deleterious(0.01) probably_damaging(0.969) TCGA-UZ-A9PS-01 2 182468798 182468798 T A CERKL Nonsense_Mutation p.K83* 0.44 TCGA-UZ-A9PS-01 2 187703706 187703706 C - ZSWIM2 Frame_Shift_Del p.K158Nfs*17 0.36 TCGA-UZ-A9PS-01 2 222321422 222321422 G - EPHA4 Frame_Shift_Del p.P505Lfs*57 0.28 TCGA-UZ-A9PS-01 2 230633435 230633435 A G TRIP12 Silent p.S1893S 0.40 TCGA-UZ-A9PS-01 2 230663701 230663701 T C TRIP12 Silent p.T1049T 0.47 TCGA-UZ-A9PS-01 2 239167228 239167228 C G PER2 Missense_Mutation p.S562T 0.46 tolerated(0.19) possibly_damaging(0.601) TCGA-UZ-A9PS-01 2 242541346 242541346 T G THAP4 Silent p.R527R 0.41 TCGA-UZ-A9PS-01 2 242541347 242541347 G C THAP4 Silent p.A526A 0.39 TCGA-UZ-A9PS-01 2 253096 253096 G A SH3YL1 Silent p.S7S 0.37 TCGA-UZ-A9PS-01 2 26537464 26537464 T A GPR113 Missense_Mutation p.Q317L 0.42 deleterious(0.03) benign(0.051) TCGA-UZ-A9PS-01 2 27423157 27423157 G C SLC5A6 3'UTR 0.48 TCGA-UZ-A9PS-01 2 29296881 29296881 A C C2orf71 Missense_Mutation p.S83A 0.36 tolerated(0.46) benign(0.013) TCGA-UZ-A9PS-01 2 68544123 68544123 T A CNRIP1 Intron 0.33 TCGA-UZ-A9PS-01 2 70315518 70315518 G T PCBP1 Nonsense_Mutation p.E215* 0.46 TCGA-UZ-A9PS-01 2 84518112 84518112 G A FUNDC2P2 RNA 0.37 TCGA-UZ-A9PS-01 2 8967199 8967199 C T KIDINS220 Missense_Mutation p.V9I 0.45 deleterious(0.05) benign(0.013) TCGA-UZ-A9PS-01 3 101371385 101371385 A C ZBTB11 Missense_Mutation p.F867V 0.47 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PS-01 3 101371390 101371390 C T ZBTB11 Missense_Mutation p.R865K 0.46 tolerated(0.64) benign(0.015) TCGA-UZ-A9PS-01 3 1424987 1424987 G A CNTN6 Silent p.L804L 0.22 TCGA-UZ-A9PS-01 3 186504539 186504539 A G EIF4A2 Intron 0.54 TCGA-UZ-A9PS-01 3 188326981 188326981 T G LPP Silent p.V154V 0.52 TCGA-UZ-A9PS-01 3 195000100 195000100 G T ACAP2 Missense_Mutation p.P765Q 0.28 deleterious(0) probably_damaging(0.992) TCGA-UZ-A9PS-01 3 196910837 196910837 T C DLG1 Intron 0.60 TCGA-UZ-A9PS-01 3 197640605 197640607 CTT - IQCG Intron 0.55 TCGA-UZ-A9PS-01 3 21478596 21478596 C T ZNF385D Missense_Mutation p.S180N 0.26 tolerated(0.15) benign(0.005) TCGA-UZ-A9PS-01 3 32207520 32207520 T C GPD1L 3'UTR 0.30 TCGA-UZ-A9PS-01 3 49315762 49315762 A - USP4 Frame_Shift_Del p.F952Lfs*? 0.35 TCGA-UZ-A9PS-01 3 49456530 49456530 G C AMT Missense_Mutation p.P251A 0.58 tolerated(0.24) benign(0) TCGA-UZ-A9PS-01 3 50294444 50294444 C A GNAI2 Missense_Mutation p.L267I 0.72 deleterious(0.02) probably_damaging(0.995) TCGA-UZ-A9PS-01 3 52551367 52551367 C T STAB1 Silent p.G1507G 0.29 TCGA-UZ-A9PS-01 3 9426471 9426471 T C THUMPD3 3'UTR 0.60 TCGA-UZ-A9PS-01 4 114279656 114279656 T - ANK2 Frame_Shift_Del p.N3294Kfs*13 0.31 TCGA-UZ-A9PS-01 4 115749045 115749046 - G NDST4 Frame_Shift_Ins p.L849Pfs*? 0.37 TCGA-UZ-A9PS-01 4 120189437 120189437 G A USP53 Missense_Mutation p.V384I 0.38 tolerated(0.17) benign(0) TCGA-UZ-A9PS-01 4 120240001 120240008 TTAGAGAA - FABP2 3'UTR 0.25 TCGA-UZ-A9PS-01 4 123159421 123159421 A T KIAA1109 Missense_Mutation p.K1250M 0.41 possibly_damaging(0.599) TCGA-UZ-A9PS-01 4 52861134 52861134 T A LRRC66 Missense_Mutation p.E685V 0.46 deleterious(0) possibly_damaging(0.643) TCGA-UZ-A9PS-01 4 71844887 71844887 T C MOB1B Missense_Mutation p.I156T 0.38 deleterious(0) probably_damaging(0.987) TCGA-UZ-A9PS-01 4 72433745 72433745 C - SLC4A4 3'UTR 0.28 TCGA-UZ-A9PS-01 4 77680809 77680809 G T SHROOM3 Silent p.V1770V 0.47 TCGA-UZ-A9PS-01 4 79188585 79188585 G T FRAS1 Missense_Mutation p.R327L 0.39 benign(0.003) TCGA-UZ-A9PS-01 5 107700623 107700623 C T FBXL17 Missense_Mutation p.R397H 0.35 deleterious(0.04) benign(0.155) TCGA-UZ-A9PS-01 5 112177639 112177639 T G APC Missense_Mutation p.H2116Q 0.46 probably_damaging(0.997) TCGA-UZ-A9PS-01 5 132216754 132216754 A T AFF4 Silent p.S1163S 0.44 TCGA-UZ-A9PS-01 5 147806844 147806844 T - FBXO38 Frame_Shift_Del p.L665Sfs*21 0.32 TCGA-UZ-A9PS-01 5 149006771 149006772 - TGGCCA ARHGEF37 In_Frame_Ins p.A534_I535insMA 0.25 TCGA-UZ-A9PS-01 5 149006781 149006781 T C ARHGEF37 Missense_Mutation p.L536P 0.40 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PS-01 5 179233457 179233457 A C MGAT4B 5'Flank 0.48 TCGA-UZ-A9PS-01 5 24535913 24535913 A - CDH10 Frame_Shift_Del p.V182Afs*44 0.37 TCGA-UZ-A9PS-01 5 54327207 54327207 A G GZMK Missense_Mutation p.K127E 0.43 tolerated(0.18) benign(0.004) TCGA-UZ-A9PS-01 5 66448607 66448607 T A MAST4 Missense_Mutation p.S1146R 0.40 possibly_damaging(0.491) TCGA-UZ-A9PS-01 5 6739855 6739855 C A PAPD7 Missense_Mutation p.L50M 0.47 deleterious(0.04) probably_damaging(0.971) TCGA-UZ-A9PS-01 5 73205350 73205350 G T ARHGEF28 Missense_Mutation p.Q1425H 0.37 deleterious(0) benign(0.089) TCGA-UZ-A9PS-01 5 76326724 76326724 G A AGGF1 Missense_Mutation p.E45K 0.39 tolerated(0.72) benign(0.214) TCGA-UZ-A9PS-01 6 144744729 144744729 C A UTRN Silent p.V93V 0.36 TCGA-UZ-A9PS-01 6 155153549 155153549 A G SCAF8 Missense_Mutation p.I946V 0.36 tolerated_low_confidence(0.42) benign(0.032) TCGA-UZ-A9PS-01 6 167416820 167416821 - T FGFR1OP Intron 0.35 TCGA-UZ-A9PS-01 6 26204932 26204932 T C HIST1H4E Silent p.R20R 0.43 TCGA-UZ-A9PS-01 6 30877807 30877807 T A GTF2H4 Missense_Mutation p.F114Y 0.28 tolerated(0.08) probably_damaging(0.993) TCGA-UZ-A9PS-01 6 32946004 32946004 A G BRD2 Silent p.A560A 0.38 TCGA-UZ-A9PS-01 6 34508841 34508841 G A SPDEF Missense_Mutation p.A185V 0.40 deleterious(0.05) possibly_damaging(0.515) TCGA-UZ-A9PS-01 6 4073537 4073537 G C FAM217A Missense_Mutation p.L92V 0.42 tolerated(0.27) benign(0.034) TCGA-UZ-A9PS-01 6 42130804 42130804 C T RP1-139D8.6 Silent p.D67D 0.43 TCGA-UZ-A9PS-01 6 46973599 46973599 C A GPR110 Silent p.L849L 0.39 TCGA-UZ-A9PS-01 6 83900710 83900710 T A PGM3 Nonsense_Mutation p.K36* 0.44 TCGA-UZ-A9PS-01 7 101891877 101891877 A T CUX1 Missense_Mutation p.Q1369L 0.36 tolerated(0.2) unknown(0) TCGA-UZ-A9PS-01 7 139305300 139305300 T C HIPK2 Silent p.S543S 0.43 TCGA-UZ-A9PS-01 7 142637863 142637863 C A C7orf34 3'UTR 0.36 TCGA-UZ-A9PS-01 7 151874432 151874433 TT - KMT2C Frame_Shift_Del p.K2702Rfs*3 0.25 TCGA-UZ-A9PS-01 7 154684050 154684050 C A DPP6 Missense_Mutation p.P820T 0.43 deleterious(0.02) probably_damaging(1) TCGA-UZ-A9PS-01 7 155493741 155493741 A G RBM33 Intron 0.48 TCGA-UZ-A9PS-01 7 45148679 45148679 G T TBRG4 Missense_Mutation p.S53Y 0.39 tolerated(0.63) benign(0.288) TCGA-UZ-A9PS-01 7 66767848 66767848 A C STAG3L4 RNA 0.10 TCGA-UZ-A9PS-01 7 66767849 66767849 G C STAG3L4 RNA 0.10 TCGA-UZ-A9PS-01 7 77885345 77885345 T A MAGI2 Silent p.V654V 0.46 TCGA-UZ-A9PS-01 7 83023614 83023614 C A SEMA3E Missense_Mutation p.R500L 0.34 deleterious(0) probably_damaging(1) TCGA-UZ-A9PS-01 7 92085728 92085728 T A GATAD1 Missense_Mutation p.F221Y 0.47 deleterious(0) probably_damaging(0.997) TCGA-UZ-A9PS-01 8 110471882 110471882 A C PKHD1L1 Missense_Mutation p.N2355H 0.31 tolerated(0.09) benign(0.001) TCGA-UZ-A9PS-01 8 121170481 121170481 T A COL14A1 Silent p.T67T 0.47 TCGA-UZ-A9PS-01 8 146075881 146075881 G T COMMD5 3'UTR 0.21 TCGA-UZ-A9PS-01 8 29195962 29195962 G A DUSP4 Silent p.A212A 0.37 TCGA-UZ-A9PS-01 8 48713405 48713405 C T PRKDC Silent p.K3354K 0.41 TCGA-UZ-A9PS-01 8 52320642 52320642 C A PXDNL Missense_Mutation p.R1181I 0.38 deleterious(0.01) possibly_damaging(0.548) TCGA-UZ-A9PS-01 9 115805449 115805449 A G ZFP37 Silent p.H483H 0.25 TCGA-UZ-A9PS-01 9 131361481 131361481 T C SPTAN1 Intron 0.56 TCGA-UZ-A9PS-01 9 131361482 131361482 T A SPTAN1 Intron 0.56 TCGA-UZ-A9PS-01 9 131689459 131689459 A G PHYHD1 Missense_Mutation p.E59G 0.52 deleterious(0.05) benign(0.018) TCGA-UZ-A9PS-01 9 131708203 131708203 G T DOLK Silent p.T460T 0.34 TCGA-UZ-A9PS-01 9 132576165 132576165 A C TOR1A 3'UTR 0.38 TCGA-UZ-A9PS-01 9 139568332 139568332 T - AGPAT2 Frame_Shift_Del p.T237Lfs*16 0.23 TCGA-UZ-A9PS-01 9 140137032 140137033 - A TUBB4B Frame_Shift_Ins p.E123Gfs*3 0.21 TCGA-UZ-A9PS-01 9 15211355 15211355 T C TTC39B Missense_Mutation p.I175V 0.37 tolerated(0.19) possibly_damaging(0.897) TCGA-UZ-A9PS-01 9 20740261 20740261 T G FOCAD Missense_Mutation p.I105S 0.41 deleterious(0) possibly_damaging(0.529) TCGA-UZ-A9PS-01 X 138643733 138643760 ATTCGAATTATTCCTCACCACAACTACA - F9 Frame_Shift_Del p.I297Mfs*20 0.39 TCGA-UZ-A9PS-01 X 153670428 153670428 C G GDI1 Intron 0.34 TCGA-UZ-A9PS-01 X 16888202 16888202 C G RBBP7 5'Flank 0.35 TCGA-UZ-A9PU-01 11 33891148 33891148 A T LMO2 Intron 0.48 TCGA-UZ-A9PU-01 11 75826995 75826995 C A UVRAG Missense_Mutation p.P445T 0.33 tolerated(0.17) benign(0.297) TCGA-UZ-A9PU-01 12 54115291 54115291 T C CALCOCO1 Missense_Mutation p.I240V 0.38 deleterious(0.02) benign(0.012) TCGA-UZ-A9PU-01 12 58145350 58145350 T C CDK4 Missense_Mutation p.I51V 0.34 tolerated(0.55) benign(0) TCGA-UZ-A9PU-01 13 28880844 28880844 G C FLT1 Missense_Mutation p.D1262E 0.49 tolerated(1) benign(0) TCGA-UZ-A9PU-01 13 35644191 35644191 A - NBEA Frame_Shift_Del p.E464Rfs*13 0.30 TCGA-UZ-A9PU-01 13 50041999 50041999 G A SETDB2 Splice_Site p.X82_splice 0.45 TCGA-UZ-A9PU-01 14 64519388 64519388 T - SYNE2 Frame_Shift_Del p.K2921Rfs*22 0.27 TCGA-UZ-A9PU-01 14 64669618 64669618 C T SYNE2 Silent p.S6046S 0.46 TCGA-UZ-A9PU-01 14 78203382 78203382 A G SNW1 Silent p.S190S 0.60 TCGA-UZ-A9PU-01 15 33069112 33069113 - T FMN1 Frame_Shift_Ins p.M1157Nfs*25 0.14 TCGA-UZ-A9PU-01 15 66838985 66838985 A G ZWILCH Missense_Mutation p.M582V 0.42 tolerated(0.18) benign(0.012) TCGA-UZ-A9PU-01 15 75042609 75042609 A C CYP1A2 Missense_Mutation p.Q177P 0.38 tolerated(0.23) probably_damaging(0.926) TCGA-UZ-A9PU-01 15 81598444 81598444 C G IL16 Missense_Mutation p.L1206V 0.30 tolerated(0.09) benign(0.034) TCGA-UZ-A9PU-01 15 98513884 98513884 C A ARRDC4 Missense_Mutation p.Q371K 0.40 tolerated(0.91) benign(0.03) TCGA-UZ-A9PU-01 16 1270632 1270632 C - CACNA1H Frame_Shift_Del p.T2235Qfs*27 0.23 TCGA-UZ-A9PU-01 17 44073780 44073780 C A MAPT Nonsense_Mutation p.S526* 0.53 TCGA-UZ-A9PU-01 17 5445303 5445303 G T NLRP1 Missense_Mutation p.A858D 0.31 deleterious(0.02) probably_damaging(0.949) TCGA-UZ-A9PU-01 17 55123419 55123419 A T RNF126P1 RNA 0.08 TCGA-UZ-A9PU-01 17 56405116 56405116 T C BZRAP1 Missense_Mutation p.R56G 0.26 tolerated_low_confidence(0.09) benign(0.002) TCGA-UZ-A9PU-01 17 7474732 7474733 - CAA SENP3 In_Frame_Ins p.Q554dup 0.38 TCGA-UZ-A9PU-01 17 7474735 7474736 - GA SENP3 Frame_Shift_Ins p.Q554Dfs*131 0.27 TCGA-UZ-A9PU-01 18 619309 619309 A G CLUL1 Missense_Mutation p.K68R 0.40 deleterious(0.02) benign(0.006) TCGA-UZ-A9PU-01 19 17899243 17899243 C - FCHO1 3'UTR 0.23 TCGA-UZ-A9PU-01 19 36510103 36510103 C T CLIP3 Missense_Mutation p.V342I 0.43 tolerated(0.33) benign(0.011) TCGA-UZ-A9PU-01 19 43568581 43568581 C G PSG2 3'UTR 0.35 TCGA-UZ-A9PU-01 19 50029465 50029465 C T FCGRT 3'UTR 0.35 TCGA-UZ-A9PU-01 19 50105116 50105116 G C PRR12 Missense_Mutation p.G1572R 0.40 unknown(0) TCGA-UZ-A9PU-01 19 52618903 52618903 T C ZNF616 Missense_Mutation p.H505R 0.38 tolerated(0.61) benign(0.109) TCGA-UZ-A9PU-01 19 58452978 58452978 G - ZNF256 Frame_Shift_Del p.L400Ffs*33 0.30 TCGA-UZ-A9PU-01 1 11983151 11983151 G A KIAA2013 Silent p.L477L 0.36 TCGA-UZ-A9PU-01 1 152681648 152681648 T - LCE4A Frame_Shift_Del p.C33Afs*28 0.31 TCGA-UZ-A9PU-01 1 158436100 158436100 T G OR10K1 Missense_Mutation p.V250G 0.46 deleterious(0) probably_damaging(0.94) TCGA-UZ-A9PU-01 1 16257405 16257405 C T SPEN Missense_Mutation p.S1557F 0.47 benign(0.248) TCGA-UZ-A9PU-01 1 17555524 17555524 C G PADI1 Missense_Mutation p.P303A 0.42 deleterious(0.01) probably_damaging(1) TCGA-UZ-A9PU-01 1 178483864 178483864 A C TEX35 Missense_Mutation p.E40D 0.49 tolerated(0.06) probably_damaging(0.953) TCGA-UZ-A9PU-01 1 186099715 186099715 G A HMCN1 Silent p.E4372E 0.47 TCGA-UZ-A9PU-01 1 208215625 208215625 G C PLXNA2 Missense_Mutation p.F1368L 0.38 deleterious(0.02) probably_damaging(0.95) TCGA-UZ-A9PU-01 1 228404296 228404297 - A OBSCN Frame_Shift_Ins p.A758Gfs*61 0.26 TCGA-UZ-A9PU-01 1 2457914 2457914 G A PANK4 Missense_Mutation p.A38V 0.25 deleterious(0) probably_damaging(0.979) TCGA-UZ-A9PU-01 1 46744943 46744943 G A LRRC41 Intron 0.32 TCGA-UZ-A9PU-01 20 57268877 57268883 CTGCCCT TGCGC NPEPL1 Frame_Shift_Del p.L79Cfs*112 0.25 TCGA-UZ-A9PU-01 21 11029687 11029687 G T BAGE2 RNA 0.17 TCGA-UZ-A9PU-01 22 41926870 41926871 CC - POLR3H Frame_Shift_Del p.W127Cfs*32 0.30 TCGA-UZ-A9PU-01 2 168106667 168106667 A G XIRP2 Missense_Mutation p.Q2922R 0.43 possibly_damaging(0.888) TCGA-UZ-A9PU-01 2 171716611 171716611 T C GAD1 3'UTR 0.36 TCGA-UZ-A9PU-01 2 190439896 190439896 T C SLC40A1 Missense_Mutation p.R88G 0.36 deleterious(0) probably_damaging(1) TCGA-UZ-A9PU-01 2 203420241 203420241 C T BMPR2 Missense_Mutation p.T618I 0.30 tolerated(0.15) possibly_damaging(0.642) TCGA-UZ-A9PU-01 2 211523412 211523412 G C CPS1 Missense_Mutation p.L1258F 0.23 deleterious(0.01) possibly_damaging(0.595) TCGA-UZ-A9PU-01 2 226491661 226491661 C A NYAP2 Missense_Mutation p.S549R 0.44 deleterious(0.01) possibly_damaging(0.794) TCGA-UZ-A9PU-01 2 229890502 229890502 A T PID1 Missense_Mutation p.V198E 0.36 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PU-01 2 28616454 28616454 A G FOSL2 5'UTR 0.15 TCGA-UZ-A9PU-01 2 28634997 28634997 G C FOSL2 Silent p.V221V 0.35 TCGA-UZ-A9PU-01 2 50850545 50850545 T C NRXN1 Silent p.G380G 0.35 TCGA-UZ-A9PU-01 2 73676852 73676852 C G ALMS1 Missense_Mutation p.D1065E 0.30 benign(0.175) TCGA-UZ-A9PU-01 2 73680903 73680911 AGTGATGCC - ALMS1 In_Frame_Del p.A2418_D2420del 0.31 TCGA-UZ-A9PU-01 2 73680924 73680924 G T ALMS1 Missense_Mutation p.G2423C 0.35 benign(0.092) TCGA-UZ-A9PU-01 2 73680925 73680925 G T ALMS1 Missense_Mutation p.G2423V 0.34 possibly_damaging(0.528) TCGA-UZ-A9PU-01 2 86302371 86302371 T G POLR1A Missense_Mutation p.K465Q 0.34 deleterious(0) probably_damaging(1) TCGA-UZ-A9PU-01 2 99136440 99136440 G C INPP4A 5'UTR 0.38 TCGA-UZ-A9PU-01 3 113441795 113441795 A - NAA50 Frame_Shift_Del p.L97* 0.22 TCGA-UZ-A9PU-01 3 184429221 184429221 C T MAGEF1 Missense_Mutation p.G130D 0.29 deleterious(0) possibly_damaging(0.866) TCGA-UZ-A9PU-01 3 195507903 195507903 A G MUC4 Silent p.G3516G 0.05 TCGA-UZ-A9PU-01 3 47891247 47891253 GTGCACA - DHX30 Frame_Shift_Del p.V1107Sfs*12 0.40 TCGA-UZ-A9PU-01 3 58555533 58555533 G C FAM107A Missense_Mutation p.P19A 0.28 deleterious(0) probably_damaging(0.996) TCGA-UZ-A9PU-01 4 10020642 10020642 A G SLC2A9 Missense_Mutation p.F69S 0.32 deleterious(0) probably_damaging(1) TCGA-UZ-A9PU-01 4 123377451 123377451 T A IL2 Missense_Mutation p.N49Y 0.39 deleterious(0.01) possibly_damaging(0.548) TCGA-UZ-A9PU-01 4 70822038 70822038 T C CSN2 3'UTR 0.40 TCGA-UZ-A9PU-01 4 76896925 76896925 T G SDAD1 Missense_Mutation p.M184L 0.44 tolerated(0.16) benign(0.019) TCGA-UZ-A9PU-01 6 33632875 33632875 G A ITPR3 Missense_Mutation p.V432M 0.75 deleterious(0) possibly_damaging(0.893) TCGA-UZ-A9PU-01 6 41555205 41555205 C G FOXP4 Missense_Mutation p.T276S 0.83 tolerated(1) benign(0.002) TCGA-UZ-A9PU-01 7 124493170 124493170 T C POT1 Missense_Mutation p.Y242C 0.63 deleterious(0) probably_damaging(0.973) TCGA-UZ-A9PU-01 7 82508768 82508768 T G PCLO Missense_Mutation p.L4513F 0.23 unknown(0) TCGA-UZ-A9PU-01 9 104130573 104130573 C G BAAT Missense_Mutation p.L166F 0.41 deleterious(0.01) possibly_damaging(0.887) TCGA-UZ-A9PU-01 9 8460470 8460470 A G PTPRD Silent p.G1272G 0.31 TCGA-UZ-A9PV-01 10 73199587 73199587 C A CDH23 Missense_Mutation p.A45D 0.52 deleterious_low_confidence(0.03) benign(0.001) TCGA-UZ-A9PV-01 10 91178569 91178569 G T IFIT5 3'UTR 0.46 TCGA-UZ-A9PV-01 11 103126956 103126956 T A DYNC2H1 Missense_Mutation p.I3490N 0.53 benign(0.003) TCGA-UZ-A9PV-01 11 108384989 108384989 A T EXPH5 Nonsense_Mutation p.Y415* 0.51 TCGA-UZ-A9PV-01 11 27413998 27413999 - T LGR4 Frame_Shift_Ins p.V109Sfs*7 0.32 TCGA-UZ-A9PV-01 11 31451825 31451825 C A DNAJC24 Missense_Mutation p.H109Q 0.49 tolerated(0.63) benign(0) TCGA-UZ-A9PV-01 11 68031211 68031211 A - C11orf24 Frame_Shift_Del p.W9Gfs*29 0.32 TCGA-UZ-A9PV-01 11 747455 747455 C T TALDO1 5'UTR 0.47 TCGA-UZ-A9PV-01 11 95564230 95564230 A G CEP57 Missense_Mutation p.K438R 0.48 tolerated(1) benign(0.002) TCGA-UZ-A9PV-01 12 113909298 113909298 C T LHX5 Missense_Mutation p.M2I 0.52 deleterious(0.03) benign(0.17) TCGA-UZ-A9PV-01 12 3000145 3000145 G A TULP3 Missense_Mutation p.S11N 0.54 deleterious_low_confidence(0.03) benign(0.069) TCGA-UZ-A9PV-01 12 6061618 6061618 A - VWF Frame_Shift_Del p.F2685Sfs*25 0.28 TCGA-UZ-A9PV-01 12 71016227 71016227 A G PTPRB Silent p.I217I 0.43 TCGA-UZ-A9PV-01 12 75892420 75892420 C T KRR1 3'UTR 0.33 TCGA-UZ-A9PV-01 14 100847806 100847806 G T WDR25 Missense_Mutation p.R182I 0.58 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PV-01 14 102452422 102452422 C G DYNC1H1 Missense_Mutation p.H620Q 0.42 possibly_damaging(0.556) TCGA-UZ-A9PV-01 15 42438354 42438354 C T PLA2G4F Missense_Mutation p.R502H 0.13 tolerated(0.32) benign(0.008) TCGA-UZ-A9PV-01 15 74241804 74241804 A C LOXL1 Missense_Mutation p.H536P 0.49 tolerated(0.14) probably_damaging(0.986) TCGA-UZ-A9PV-01 16 56473585 56473585 T A NUDT21 Missense_Mutation p.N152I 0.51 deleterious(0) probably_damaging(0.994) TCGA-UZ-A9PV-01 16 86612503 86612503 C A FOXL1 Silent p.I58I 0.42 TCGA-UZ-A9PV-01 17 1265222 1265222 G A YWHAE Silent p.G115G 0.03 TCGA-UZ-A9PV-01 17 15466770 15466770 C T TVP23C 5'UTR 0.30 TCGA-UZ-A9PV-01 17 2185973 2185973 C T SMG6 Missense_Mutation p.E877K 0.27 tolerated(0.16) possibly_damaging(0.593) TCGA-UZ-A9PV-01 17 3119607 3119607 G T OR1A1 Missense_Mutation p.K231N 0.71 deleterious(0.01) probably_damaging(0.973) TCGA-UZ-A9PV-01 17 35549238 35549238 C A ACACA Missense_Mutation p.E1403D 0.33 deleterious(0.04) probably_damaging(0.994) TCGA-UZ-A9PV-01 17 65919081 65919082 - G BPTF Frame_Shift_Ins p.E1896Gfs*7 0.34 TCGA-UZ-A9PV-01 18 44259974 44259974 G A ST8SIA5 3'UTR 0.58 TCGA-UZ-A9PV-01 19 13409851 13409851 C G CACNA1A Missense_Mutation p.D866H 0.47 probably_damaging(0.963) TCGA-UZ-A9PV-01 19 18096236 18096240 GGTGT - KCNN1 Frame_Shift_Del p.G345Vfs*29 0.47 TCGA-UZ-A9PV-01 19 35450319 35450319 A - ZNF792 Frame_Shift_Del p.L147Wfs*20 0.32 TCGA-UZ-A9PV-01 19 40328472 40328472 G A FBL Silent p.V187V 0.46 TCGA-UZ-A9PV-01 19 54647753 54647753 G C CNOT3 Silent p.R90R 0.46 TCGA-UZ-A9PV-01 1 101456156 101456156 T C DPH5 Silent p.L222L 0.44 TCGA-UZ-A9PV-01 1 10407834 10407834 G T KIF1B Silent p.V1225V 0.06 TCGA-UZ-A9PV-01 1 110603552 110603552 C A ALX3 Missense_Mutation p.G279W 0.46 deleterious(0) possibly_damaging(0.905) TCGA-UZ-A9PV-01 1 248436732 248436732 G A OR2T33 Nonsense_Mutation p.R129* 0.06 TCGA-UZ-A9PV-01 1 54671037 54671037 G A MRPL37 Silent p.R200R 0.47 TCGA-UZ-A9PV-01 1 94522185 94522185 C T ABCA4 Missense_Mutation p.R785H 0.56 tolerated(0.47) benign(0.066) TCGA-UZ-A9PV-01 20 44581108 44581108 C A ZNF335 Missense_Mutation p.G956V 0.70 tolerated(0.08) benign(0.025) TCGA-UZ-A9PV-01 21 32508274 32508274 T C TIAM1 Missense_Mutation p.K1287R 0.05 deleterious(0.03) benign(0.016) TCGA-UZ-A9PV-01 21 35208937 35208937 G A ITSN1 Splice_Site p.X1221_splice 0.39 TCGA-UZ-A9PV-01 22 40343030 40343030 A G GRAP2 Intron 0.30 TCGA-UZ-A9PV-01 2 167055908 167055908 G T SCN9A Silent p.S1736S 0.44 TCGA-UZ-A9PV-01 3 102187928 102187929 GC - ZPLD1 Frame_Shift_Del p.H311Lfs*10 0.34 TCGA-UZ-A9PV-01 3 130743519 130743519 T A ASTE1 Missense_Mutation p.N211I 0.44 deleterious(0) possibly_damaging(0.903) TCGA-UZ-A9PV-01 3 149243902 149243902 G A WWTR1 Missense_Mutation p.H306Y 0.29 deleterious(0) possibly_damaging(0.456) TCGA-UZ-A9PV-01 3 179051889 179051926 TGGTTTTCGGAGTAGACTTCACACAAATGTTAACAGGC - ZNF639 Nonsense_Mutation p.C379* 0.11 TCGA-UZ-A9PV-01 3 38043001 38043001 C G VILL Missense_Mutation p.Q413E 0.41 tolerated(0.13) possibly_damaging(0.902) TCGA-UZ-A9PV-01 4 168155397 168155397 C T SPOCK3 Intron 0.35 TCGA-UZ-A9PV-01 4 170610219 170610219 T A CLCN3 Silent p.I148I 0.50 TCGA-UZ-A9PV-01 4 6642705 6642705 T C MRFAP1 Missense_Mutation p.I39T 0.36 tolerated(0.05) benign(0.032) TCGA-UZ-A9PV-01 4 72215763 72215763 A T SLC4A4 Missense_Mutation p.E175V 0.56 tolerated(0.11) possibly_damaging(0.459) TCGA-UZ-A9PV-01 4 84516012 84516012 T C AGPAT9 Silent p.H251H 0.41 TCGA-UZ-A9PV-01 4 89300229 89300229 G C HERC6 Missense_Mutation p.R52S 0.53 tolerated(0.34) benign(0.34) TCGA-UZ-A9PV-01 5 110809082 110809082 C - CAMK4 Frame_Shift_Del p.L234Yfs*22 0.10 TCGA-UZ-A9PV-01 5 115351418 115351418 C G AQPEP Silent p.V904V 0.54 TCGA-UZ-A9PV-01 5 126253785 126253785 C G MARCH3 Missense_Mutation p.V27L 0.41 tolerated_low_confidence(0.23) benign(0.011) TCGA-UZ-A9PV-01 5 145246288 145246288 G T GRXCR2 Missense_Mutation p.L114I 0.39 tolerated(0.07) benign(0.048) TCGA-UZ-A9PV-01 5 14608915 14608915 T C FAM105A Missense_Mutation p.L229P 0.06 deleterious(0) probably_damaging(1) TCGA-UZ-A9PV-01 5 149386162 149386162 G A HMGXB3 Silent p.R88R 0.54 TCGA-UZ-A9PV-01 5 176008530 176008530 G A CDHR2 Missense_Mutation p.D669N 0.49 deleterious(0) probably_damaging(1) TCGA-UZ-A9PV-01 5 6372638 6372638 C A MED10 Missense_Mutation p.G129V 0.48 deleterious(0.01) benign(0.172) TCGA-UZ-A9PV-01 6 117686779 117686779 C G ROS1 Missense_Mutation p.V980L 0.47 deleterious(0.01) benign(0.11) TCGA-UZ-A9PV-01 6 139563669 139563669 G T TXLNB Silent p.V683V 0.37 TCGA-UZ-A9PV-01 6 32139113 32139113 G T AGPAT1 Missense_Mutation p.P54H 0.45 deleterious(0.02) probably_damaging(0.912) TCGA-UZ-A9PV-01 6 74078985 74078985 C A OOEP Missense_Mutation p.R105L 0.42 deleterious(0) possibly_damaging(0.556) TCGA-UZ-A9PV-01 7 123329152 123329152 A G WASL Missense_Mutation p.I467T 0.39 deleterious(0.04) possibly_damaging(0.741) TCGA-UZ-A9PV-01 7 135412241 135412241 C A SLC13A4 Missense_Mutation p.G2C 0.36 deleterious(0.01) unknown(0) TCGA-UZ-A9PV-01 7 43485157 43485157 A G HECW1 Missense_Mutation p.N796D 0.58 tolerated_low_confidence(0.6) benign(0) TCGA-UZ-A9PV-01 7 90044900 90044900 T G CLDN12 3'UTR 0.35 TCGA-UZ-A9PV-01 8 125061887 125061887 G A FER1L6 Missense_Mutation p.V922I 0.50 tolerated(0.45) benign(0.007) TCGA-UZ-A9PV-01 8 36788664 36788664 G A KCNU1 Splice_Site p.X977_splice 0.40 TCGA-UZ-A9PV-01 9 85630731 85630731 T C RASEF Missense_Mutation p.K252E 0.50 deleterious(0.01) benign(0.437) TCGA-UZ-A9PV-01 X 140995392 140995392 G A MAGEC1 Silent p.E734E 0.09 TCGA-UZ-A9PV-01 X 70316598 70316598 C A FOXO4 Missense_Mutation p.P74T 0.98 tolerated(0.11) benign(0.377) TCGA-UZ-A9PX-01 10 102738568 102738568 G A MRPL43 3'Flank 0.26 TCGA-UZ-A9PX-01 10 116606357 116606357 C A FAM160B1 Missense_Mutation p.Q480K 0.42 tolerated(0.07) possibly_damaging(0.794) TCGA-UZ-A9PX-01 10 129904535 129904535 T - MKI67 Frame_Shift_Del p.I1857Yfs*30 0.30 TCGA-UZ-A9PX-01 10 49659125 49659127 GAA - ARHGAP22 In_Frame_Del p.F365del 0.35 TCGA-UZ-A9PX-01 10 75051507 75051507 C T TTC18 Silent p.L707L 0.36 TCGA-UZ-A9PX-01 10 99213325 99213327 TAC - ZDHHC16 In_Frame_Del p.Y199del 0.38 TCGA-UZ-A9PX-01 10 99213338 99213338 T C ZDHHC16 Missense_Mutation p.F203S 0.37 deleterious(0) probably_damaging(1) TCGA-UZ-A9PX-01 10 99213339 99213339 C T ZDHHC16 Silent p.F203F 0.37 TCGA-UZ-A9PX-01 11 107326471 107326471 C G CWF19L2 Missense_Mutation p.R46P 0.36 deleterious(0.03) possibly_damaging(0.738) TCGA-UZ-A9PX-01 11 124190009 124190009 G A OR8D2 Missense_Mutation p.L29F 0.40 tolerated(0.48) benign(0.348) TCGA-UZ-A9PX-01 11 128563926 128563926 C A FLI1 5'UTR 0.30 TCGA-UZ-A9PX-01 11 134244998 134244998 C A GLB1L2 3'UTR 0.49 TCGA-UZ-A9PX-01 11 46747489 46747489 G C F2 Missense_Mutation p.V214L 0.44 tolerated(0.69) benign(0.014) TCGA-UZ-A9PX-01 11 5602863 5602863 C T OR52B6 Missense_Mutation p.R253C 0.45 deleterious(0.02) benign(0.008) TCGA-UZ-A9PX-01 11 67191541 67191541 G T CARNS1 Missense_Mutation p.E774D 0.35 tolerated(0.75) benign(0.014) TCGA-UZ-A9PX-01 11 93480496 93480496 C T C11orf54 5'UTR 0.43 TCGA-UZ-A9PX-01 12 1137356 1137356 G A ERC1 Missense_Mutation p.G96E 0.58 tolerated(0.4) benign(0.284) TCGA-UZ-A9PX-01 12 119617127 119617127 G A HSPB8 Missense_Mutation p.G4S 0.39 tolerated(0.51) benign(0.019) TCGA-UZ-A9PX-01 12 124498387 124498387 T A ZNF664 3'UTR 0.44 TCGA-UZ-A9PX-01 12 2061663 2061663 A T DCP1B Silent p.A481A 0.59 TCGA-UZ-A9PX-01 12 50367251 50367251 C T AQP6 Missense_Mutation p.R99C 0.57 deleterious(0.03) benign(0.146) TCGA-UZ-A9PX-01 12 51663104 51663104 T C SMAGP Intron 0.48 TCGA-UZ-A9PX-01 12 52379093 52379093 C T ACVR1B Missense_Mutation p.T407I 0.65 tolerated(0.09) possibly_damaging(0.557) TCGA-UZ-A9PX-01 12 57488511 57488511 G A NAB2 3'UTR 0.65 TCGA-UZ-A9PX-01 12 6981569 6981569 C T SPSB2 Missense_Mutation p.R166K 0.53 tolerated(1) possibly_damaging(0.459) TCGA-UZ-A9PX-01 12 7295802 7295802 A G CLSTN3 Missense_Mutation p.D581G 0.05 deleterious(0.01) benign(0.03) TCGA-UZ-A9PX-01 12 81751966 81751966 C A PPFIA2 Silent p.R556R 0.65 TCGA-UZ-A9PX-01 12 98993879 98993879 T C SLC25A3 Missense_Mutation p.V264A 0.59 tolerated(1) benign(0.006) TCGA-UZ-A9PX-01 13 24190133 24190133 A G TNFRSF19 Missense_Mutation p.K103R 0.31 tolerated(0.15) benign(0.043) TCGA-UZ-A9PX-01 13 33628024 33628024 A - KL Frame_Shift_Del p.E315Nfs*10 0.26 TCGA-UZ-A9PX-01 13 96293651 96293651 C T DZIP1 Silent p.K165K 0.68 TCGA-UZ-A9PX-01 14 105208271 105208271 G A ADSSL1 Missense_Mutation p.V337M 0.35 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PX-01 14 57747111 57747111 T A AP5M1 Missense_Mutation p.S307T 0.41 tolerated(0.63) benign(0.002) TCGA-UZ-A9PX-01 15 25207312 25207312 A G SNURF Silent p.E22E 0.41 TCGA-UZ-A9PX-01 15 28369256 28369256 G A HERC2 Missense_Mutation p.S4372L 0.41 benign(0.018) TCGA-UZ-A9PX-01 15 34127190 34127190 C A RYR3 Missense_Mutation p.Q3829K 0.32 probably_damaging(0.93) TCGA-UZ-A9PX-01 15 52425644 52425644 A G GNB5 Missense_Mutation p.V265A 0.35 deleterious(0.02) probably_damaging(0.972) TCGA-UZ-A9PX-01 15 56386619 56386619 G T RFX7 Missense_Mutation p.P1103T 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UZ-A9PX-01 15 90260171 90260171 T C WDR93 Silent p.P262P 0.43 TCGA-UZ-A9PX-01 15 90796537 90796540 ACTC - TTLL13 Frame_Shift_Del p.T119Cfs*16 0.26 TCGA-UZ-A9PX-01 16 28497728 28497728 C A CLN3 Missense_Mutation p.G206V 0.30 deleterious(0.03) probably_damaging(1) TCGA-UZ-A9PX-01 16 75690303 75690303 G A TERF2IP Missense_Mutation p.V332I 0.23 deleterious(0.04) benign(0.179) TCGA-UZ-A9PX-01 16 79628550 79628550 A T MAF Intron 0.09 TCGA-UZ-A9PX-01 17 26099471 26099471 G C NOS2 Missense_Mutation p.L523V 0.28 tolerated(0.39) possibly_damaging(0.566) TCGA-UZ-A9PX-01 17 34122477 34122477 T A MMP28 5'UTR 0.85 TCGA-UZ-A9PX-01 17 36638765 36638765 G A ARHGAP23 Missense_Mutation p.R918H 0.59 tolerated(0.21) benign(0.003) TCGA-UZ-A9PX-01 17 49357809 49357809 T C UTP18 Silent p.S391S 0.24 TCGA-UZ-A9PX-01 17 56429376 56429376 T G SUPT4H1 Intron 0.55 TCGA-UZ-A9PX-01 17 62496750 62496750 A T DDX5 Missense_Mutation p.V453E 0.54 deleterious(0) benign(0.179) TCGA-UZ-A9PX-01 17 7297469 7297469 T C TMEM256-PLSCR3 5'UTR 0.58 TCGA-UZ-A9PX-01 17 73273495 73273495 T G SLC25A19 Missense_Mutation p.D238A 0.22 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PX-01 18 50866222 50866222 C T DCC Silent p.Y768Y 0.43 TCGA-UZ-A9PX-01 18 56202906 56202906 G C ALPK2 Missense_Mutation p.P1505A 0.34 deleterious(0.03) possibly_damaging(0.52) TCGA-UZ-A9PX-01 19 12996546 12996546 C A KLF1 Silent p.L166L 0.47 TCGA-UZ-A9PX-01 19 16006325 16006325 T A CYP4F2 Missense_Mutation p.N112Y 0.43 tolerated(0.96) benign(0.012) TCGA-UZ-A9PX-01 19 17722656 17722656 C T UNC13A Missense_Mutation p.V1523I 0.36 tolerated(0.13) possibly_damaging(0.817) TCGA-UZ-A9PX-01 19 19217183 19217183 C A SLC25A42 Silent p.T162T 0.40 TCGA-UZ-A9PX-01 19 35800864 35800864 C T MAG Missense_Mutation p.P440L 0.42 deleterious(0) probably_damaging(0.94) TCGA-UZ-A9PX-01 19 38591691 38591691 G T SIPA1L3 Splice_Site p.X619_splice 0.14 TCGA-UZ-A9PX-01 19 40553275 40553280 CACTTA - ZNF780B Splice_Site p.X78_splice 0.27 TCGA-UZ-A9PX-01 19 41117892 41117892 T A LTBP4 Splice_Site p.X794_splice 0.50 TCGA-UZ-A9PX-01 19 8661948 8661948 G A ADAMTS10 Silent p.I321I 0.43 TCGA-UZ-A9PX-01 1 113257547 113257547 G T PPM1J Intron 0.17 TCGA-UZ-A9PX-01 1 113642882 113642882 G T LRIG2 Missense_Mutation p.G408C 0.45 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PX-01 1 114454066 114454066 C T DCLRE1B Silent p.A284A 0.45 TCGA-UZ-A9PX-01 1 154221875 154221875 T C UBAP2L Missense_Mutation p.M392T 0.41 tolerated(0.13) unknown(0) TCGA-UZ-A9PX-01 1 171621388 171621388 C G MYOC Missense_Mutation p.G122R 0.37 tolerated(0.12) benign(0.157) TCGA-UZ-A9PX-01 1 173703270 173703270 C A KLHL20 Missense_Mutation p.L148I 0.40 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PX-01 1 228487647 228487648 - TT OBSCN Frame_Shift_Ins p.L4514Ffs*6 0.33 TCGA-UZ-A9PX-01 1 237550598 237550598 C T RYR2 Silent p.N198N 0.09 TCGA-UZ-A9PX-01 1 29037152 29037152 C A GMEB1 Missense_Mutation p.T340K 0.38 deleterious(0.02) benign(0.027) TCGA-UZ-A9PX-01 1 35457924 35457924 A C ZMYM6 Nonsense_Mutation p.L686* 0.48 TCGA-UZ-A9PX-01 1 41228712 41228712 G C NFYC Missense_Mutation p.Q238H 0.37 tolerated_low_confidence(0.09) probably_damaging(0.945) TCGA-UZ-A9PX-01 1 43305841 43305841 C T ERMAP Missense_Mutation p.A226V 0.39 deleterious(0.01) possibly_damaging(0.588) TCGA-UZ-A9PX-01 20 13756539 13756540 - T ESF1 Frame_Shift_Ins p.D339Rfs*6 0.27 TCGA-UZ-A9PX-01 20 33470621 33470621 A - ACSS2 Frame_Shift_Del p.E68Dfs*19 0.29 TCGA-UZ-A9PX-01 20 60705652 60705652 T C LSM14B Missense_Mutation p.I247T 0.41 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PX-01 22 18185096 18185096 G A BCL2L13 Missense_Mutation p.G182S 0.40 deleterious(0.02) probably_damaging(1) TCGA-UZ-A9PX-01 22 26083609 26083609 G A ADRBK2 Missense_Mutation p.R311Q 0.34 tolerated(0.08) benign(0.187) TCGA-UZ-A9PX-01 22 31011613 31011613 G A TCN2 Missense_Mutation p.G260E 0.29 tolerated(0.57) benign(0.012) TCGA-UZ-A9PX-01 22 31600511 31600511 T A RNF185 Missense_Mutation p.F173Y 0.50 tolerated(0.23) benign(0.003) TCGA-UZ-A9PX-01 22 45809422 45809422 C G SMC1B Silent p.V9V 0.48 TCGA-UZ-A9PX-01 2 166737187 166737187 A T TTC21B Splice_Site p.X1269_splice 0.45 TCGA-UZ-A9PX-01 2 172582207 172582208 - GA DYNC1I2 Frame_Shift_Ins p.N199Kfs*11 0.31 TCGA-UZ-A9PX-01 2 200820130 200820130 G T TYW5 Missense_Mutation p.H22N 0.34 tolerated(0.51) benign(0.001) TCGA-UZ-A9PX-01 2 21238299 21238299 C T APOB Missense_Mutation p.D1151N 0.38 possibly_damaging(0.782) TCGA-UZ-A9PX-01 2 231663533 231663533 C T CAB39 Missense_Mutation p.S163L 0.39 deleterious(0) possibly_damaging(0.642) TCGA-UZ-A9PX-01 2 24524074 24524074 G C ITSN2 Missense_Mutation p.L344V 0.37 tolerated(0.29) possibly_damaging(0.868) TCGA-UZ-A9PX-01 2 38791271 38791271 A T HNRNPLL 3'UTR 0.44 TCGA-UZ-A9PX-01 2 55473542 55473542 T G MTIF2 Missense_Mutation p.E346A 0.44 deleterious(0.02) probably_damaging(1) TCGA-UZ-A9PX-01 2 69650823 69650823 C T NFU1 Missense_Mutation p.D65N 0.34 tolerated(0.07) probably_damaging(0.978) TCGA-UZ-A9PX-01 2 96931191 96931191 T C TMEM127 5'UTR 0.38 TCGA-UZ-A9PX-01 3 113440590 113440591 - T NAA50 3'UTR 0.30 TCGA-UZ-A9PX-01 3 37369055 37369056 - AAAT GOLGA4 Frame_Shift_Ins p.P1918* 0.40 TCGA-UZ-A9PX-01 3 41267192 41267192 T A CTNNB1 Missense_Mutation p.L259H 0.42 deleterious(0) probably_damaging(1) TCGA-UZ-A9PX-01 3 49723632 49723632 A G MST1 Intron 0.45 TCGA-UZ-A9PX-01 3 51429622 51429622 C A RBM15B Silent p.R264R 0.36 TCGA-UZ-A9PX-01 3 52419350 52419350 T A DNAH1 Intron 0.33 TCGA-UZ-A9PX-01 3 69096518 69096518 A C TMF1 Missense_Mutation p.D446E 0.40 tolerated(0.88) benign(0.002) TCGA-UZ-A9PX-01 3 97596113 97596114 - T CRYBG3 Frame_Shift_Ins p.H79Sfs*2 0.28 TCGA-UZ-A9PX-01 4 123150305 123150305 T A KIAA1109 Silent p.T984T 0.40 TCGA-UZ-A9PX-01 4 174294597 174294597 C G SAP30 Missense_Mutation p.N124K 0.44 deleterious(0.01) probably_damaging(0.982) TCGA-UZ-A9PX-01 4 1836665 1836665 G T LETM1 Silent p.A261A 0.61 TCGA-UZ-A9PX-01 4 23833339 23833339 T A PPARGC1A Silent p.A90A 0.40 TCGA-UZ-A9PX-01 4 39409127 39409127 C A KLB Missense_Mutation p.N186K 0.50 tolerated(1) benign(0.034) TCGA-UZ-A9PX-01 4 82126083 82126083 T G PRKG2 Missense_Mutation p.K40T 0.44 deleterious(0.01) benign(0.125) TCGA-UZ-A9PX-01 4 83765635 83765635 T C SEC31A Missense_Mutation p.I844V 0.38 tolerated(0.6) benign(0.003) TCGA-UZ-A9PX-01 4 85729530 85729531 - AG WDFY3 Frame_Shift_Ins p.S796Lfs*36 0.29 TCGA-UZ-A9PX-01 5 100231400 100231400 A G ST8SIA4 Missense_Mutation p.V68A 0.41 benign(0) TCGA-UZ-A9PX-01 5 132018286 132018287 - A IL4 3'UTR 0.21 TCGA-UZ-A9PX-01 5 14401112 14401112 C A TRIO Missense_Mutation p.P1552H 0.44 benign(0.328) TCGA-UZ-A9PX-01 5 159519799 159519799 A G PWWP2A Missense_Mutation p.S620P 0.05 tolerated(0.24) benign(0.006) TCGA-UZ-A9PX-01 5 176025470 176025470 C G GPRIN1 Missense_Mutation p.E456Q 0.38 tolerated(0.09) possibly_damaging(0.509) TCGA-UZ-A9PX-01 5 56178645 56178645 T C MAP3K1 Silent p.P1206P 0.31 TCGA-UZ-A9PX-01 5 59901536 59901536 C T DEPDC1B Missense_Mutation p.G349D 0.41 deleterious(0.04) benign(0.044) TCGA-UZ-A9PX-01 5 78293889 78293889 T C DMGDH 3'UTR 0.42 TCGA-UZ-A9PX-01 5 79375049 79375049 C T THBS4 Nonsense_Mutation p.R827* 0.48 TCGA-UZ-A9PX-01 6 144179108 144179108 T C LTV1 Silent p.N253N 0.43 TCGA-UZ-A9PX-01 6 16328031 16328031 G A ATXN1 Missense_Mutation p.R171C 0.14 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PX-01 6 2624060 2624060 G C C6orf195 5'UTR 0.64 TCGA-UZ-A9PX-01 6 34004335 34004335 A C GRM4 Missense_Mutation p.S518A 0.60 deleterious(0.02) possibly_damaging(0.66) TCGA-UZ-A9PX-01 6 34508954 34508954 G T SPDEF Silent p.P147P 0.46 TCGA-UZ-A9PX-01 6 43969793 43969793 T C C6orf223 Missense_Mutation p.L71P 0.38 deleterious_low_confidence(0.02) unknown(0) TCGA-UZ-A9PX-01 6 55739817 55739817 C G BMP5 5'UTR 0.34 TCGA-UZ-A9PX-01 7 139311504 139311504 T C HIPK2 Missense_Mutation p.S488G 0.43 tolerated(0.05) benign(0.09) TCGA-UZ-A9PX-01 7 143657752 143657752 C G OR2F1 Missense_Mutation p.S230C 0.44 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PX-01 7 5354660 5354669 TGGCTCCTGG - TNRC18 Frame_Shift_Del p.P2325Rfs*35 0.37 TCGA-UZ-A9PX-01 7 96635529 96635529 G A DLX6 Silent p.A80A 0.05 TCGA-UZ-A9PX-01 7 99669236 99669236 T C ZNF3 Missense_Mutation p.K291E 0.48 deleterious(0) probably_damaging(0.979) TCGA-UZ-A9PX-01 8 11702626 11702626 A G CTSB 3'UTR 0.35 TCGA-UZ-A9PX-01 8 144995292 144995292 G T PLEC Silent p.S3036S 0.50 TCGA-UZ-A9PX-01 8 20077779 20077779 T C ATP6V1B2 Missense_Mutation p.Y468H 0.45 tolerated(0.18) benign(0.182) TCGA-UZ-A9PX-01 9 104309714 104309714 A G RNF20 Missense_Mutation p.K336E 0.38 tolerated(0.15) benign(0.292) TCGA-UZ-A9PX-01 9 113241924 113241924 C T SVEP1 Silent p.L826L 0.48 TCGA-UZ-A9PX-01 9 114484785 114484785 G C C9orf84 Missense_Mutation p.P615A 0.36 tolerated(0.69) possibly_damaging(0.572) TCGA-UZ-A9PX-01 9 125140275 125140275 C G PTGS1 Silent p.S64S 0.33 TCGA-UZ-A9PX-01 9 130932354 130932354 C A CIZ1 Missense_Mutation p.C659F 0.11 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9PX-01 9 15724954 15724954 G C CCDC171 Missense_Mutation p.A558P 0.47 deleterious(0) possibly_damaging(0.831) TCGA-UZ-A9PX-01 9 73150781 73150781 G C TRPM3 3'UTR 0.57 TCGA-UZ-A9PX-01 9 73150783 73150783 A T TRPM3 3'UTR 0.57 TCGA-UZ-A9PX-01 9 79322239 79322239 T C PRUNE2 Missense_Mutation p.T1651A 0.32 tolerated(1) benign(0.002) TCGA-UZ-A9PX-01 9 91609013 91609013 T C C9orf47 3'UTR 0.46 TCGA-UZ-A9PX-01 X 153199832 153199832 G T NAA10 Missense_Mutation p.Q40K 0.89 deleterious(0) benign(0.265) TCGA-UZ-A9PX-01 X 23353163 23353163 G A PTCHD1 Silent p.A57A 0.87 TCGA-UZ-A9PX-01 X 47497265 47497265 C T ELK1 Missense_Mutation p.S324N 0.88 deleterious(0) probably_damaging(0.985) TCGA-UZ-A9PX-01 X 49846494 49846494 A G CLCN5 Missense_Mutation p.K308R 0.73 tolerated(0.06) probably_damaging(0.997) TCGA-UZ-A9PZ-01 10 16941122 16941122 T C CUBN Missense_Mutation p.N2824S 0.81 tolerated(0.13) benign(0.196) TCGA-UZ-A9PZ-01 11 130005455 130005455 C A APLP2 Intron 0.49 TCGA-UZ-A9PZ-01 11 13729613 13729613 A C FAR1 Missense_Mutation p.I178L 0.45 tolerated(0.19) benign(0.004) TCGA-UZ-A9PZ-01 11 46401061 46401061 C T DGKZ Silent p.R1060R 0.06 TCGA-UZ-A9PZ-01 11 58710734 58710734 T C GLYATL1 5'UTR 0.41 TCGA-UZ-A9PZ-01 11 7064285 7064285 T A NLRP14 Missense_Mutation p.F343Y 0.34 deleterious(0) probably_damaging(0.989) TCGA-UZ-A9PZ-01 11 89443479 89443479 A T TRIM77 Missense_Mutation p.I5F 0.34 tolerated(0.36) benign(0.004) TCGA-UZ-A9PZ-01 12 31135568 31135568 G C TSPAN11 Missense_Mutation p.K186N 0.43 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PZ-01 12 56618641 56618641 A G NABP2 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-UZ-A9PZ-01 12 72056805 72056805 G T ZFC3H1 Missense_Mutation p.P196T 0.37 tolerated(0.7) possibly_damaging(0.641) TCGA-UZ-A9PZ-01 13 30341192 30341192 A T UBL3 3'UTR 0.21 TCGA-UZ-A9PZ-01 13 52992189 52992189 C A VPS36 Missense_Mutation p.L281F 0.21 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9PZ-01 13 77657271 77657271 T C MYCBP2 Silent p.E3606E 0.32 TCGA-UZ-A9PZ-01 13 77657272 77657272 T G MYCBP2 Missense_Mutation p.E3606A 0.30 probably_damaging(0.965) TCGA-UZ-A9PZ-01 14 55309580 55309580 C T GCH1 3'UTR 0.64 TCGA-UZ-A9PZ-01 14 63468086 63468086 C T KCNH5 Silent p.T132T 0.30 TCGA-UZ-A9PZ-01 15 85488365 85488365 A G SLC28A1 Silent p.P628P 0.42 TCGA-UZ-A9PZ-01 15 97326859 97326859 G T SPATA8 5'UTR 0.47 TCGA-UZ-A9PZ-01 17 18232672 18232672 A G SHMT1 Missense_Mutation p.L401P 0.31 deleterious(0) probably_damaging(1) TCGA-UZ-A9PZ-01 17 21188058 21188058 C A MAP2K3 5'UTR 0.35 TCGA-UZ-A9PZ-01 17 79880184 79880184 T C MAFG 3'UTR 0.30 TCGA-UZ-A9PZ-01 17 80714073 80714073 C A TBCD Missense_Mutation p.L73M 0.56 deleterious(0) probably_damaging(1) TCGA-UZ-A9PZ-01 18 28935300 28935300 T A DSG1 Nonsense_Mutation p.Y1047* 0.41 TCGA-UZ-A9PZ-01 19 21712584 21712584 T A ZNF429 Missense_Mutation p.L43Q 0.41 deleterious(0) probably_damaging(0.992) TCGA-UZ-A9PZ-01 19 4704227 4704227 G T DPP9 Missense_Mutation p.D172E 0.06 tolerated(0.58) possibly_damaging(0.45) TCGA-UZ-A9PZ-01 19 47278876 47278876 G C SLC1A5 Missense_Mutation p.P506R 0.48 tolerated(0.14) benign(0.288) TCGA-UZ-A9PZ-01 19 49950663 49950663 C T PIH1D1 Silent p.S181S 0.31 TCGA-UZ-A9PZ-01 1 120839624 120839624 G A FAM72B 5'UTR 0.09 TCGA-UZ-A9PZ-01 1 155110120 155110120 T C SLC50A1 Silent p.P122P 0.55 TCGA-UZ-A9PZ-01 1 155885482 155885482 G C KIAA0907 Intron 0.21 TCGA-UZ-A9PZ-01 1 160146320 160146320 A C ATP1A4 Silent p.R840R 0.37 TCGA-UZ-A9PZ-01 1 45797352 45797352 C T MUTYH Silent p.L386L 0.34 TCGA-UZ-A9PZ-01 1 54433526 54433527 AC T LRRC42 Frame_Shift_Del p.T401* 0.30 TCGA-UZ-A9PZ-01 20 55748287 55748287 T C BMP7 Missense_Mutation p.N372S 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-UZ-A9PZ-01 20 62195231 62195231 G A HELZ2 Silent p.G1648G 0.28 TCGA-UZ-A9PZ-01 22 26399261 26399261 C T MYO18B Silent p.S2106S 0.37 TCGA-UZ-A9PZ-01 2 11755338 11755338 G A GREB1 Missense_Mutation p.A1082T 0.39 tolerated(0.38) benign(0.005) TCGA-UZ-A9PZ-01 2 120221714 120221714 G A SCTR Silent p.Y207Y 0.38 TCGA-UZ-A9PZ-01 2 175304729 175304729 C G GPR155 Missense_Mutation p.E737Q 0.52 tolerated(0.52) benign(0.015) TCGA-UZ-A9PZ-01 2 198362107 198362108 CT - HSPD1 Frame_Shift_Del p.V62Dfs*3 0.25 TCGA-UZ-A9PZ-01 2 233612395 233612395 T C GIGYF2 Silent p.L38L 0.41 TCGA-UZ-A9PZ-01 2 240969002 240969002 G A OR6B2 Missense_Mutation p.T282M 0.05 deleterious(0) possibly_damaging(0.512) TCGA-UZ-A9PZ-01 2 69046642 69046642 A G ARHGAP25 Intron 0.25 TCGA-UZ-A9PZ-01 2 73868455 73868455 A G NAT8 Missense_Mutation p.Y101H 0.41 deleterious(0) probably_damaging(0.987) TCGA-UZ-A9PZ-01 2 97490922 97490922 C T CNNM3 Silent p.D451D 0.12 TCGA-UZ-A9PZ-01 4 158257702 158257702 C A GRIA2 Nonsense_Mutation p.C549* 0.31 TCGA-UZ-A9PZ-01 4 183696133 183696133 G A TENM3 Missense_Mutation p.G1711S 0.40 deleterious(0.02) probably_damaging(0.934) TCGA-UZ-A9PZ-01 4 3533995 3533995 C T LRPAP1 Missense_Mutation p.E49K 0.42 tolerated(0.41) benign(0.306) TCGA-UZ-A9PZ-01 4 44450247 44450247 G T KCTD8 Missense_Mutation p.F98L 0.08 deleterious(0) possibly_damaging(0.902) TCGA-UZ-A9PZ-01 4 52861561 52861561 C T LRRC66 Missense_Mutation p.A543T 0.29 tolerated(0.1) possibly_damaging(0.506) TCGA-UZ-A9PZ-01 4 52861562 52861562 C G LRRC66 Silent p.V542V 0.28 TCGA-UZ-A9PZ-01 5 140953694 140953694 A G DIAPH1 Missense_Mutation p.S575P 0.49 unknown(0) TCGA-UZ-A9PZ-01 5 16463842 16463842 T C ZNF622 Missense_Mutation p.D212G 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-UZ-A9PZ-01 5 33937725 33937725 A T RXFP3 Missense_Mutation p.I294F 0.58 deleterious(0) possibly_damaging(0.889) TCGA-UZ-A9PZ-01 5 5465025 5465025 A T KIAA0947 Missense_Mutation p.R1860W 0.46 deleterious(0.02) possibly_damaging(0.846) TCGA-UZ-A9PZ-01 5 86659213 86659213 A G RASA1 Missense_Mutation p.D501G 0.38 deleterious(0) probably_damaging(0.992) TCGA-UZ-A9PZ-01 6 109796655 109796655 T G ZBTB24 Missense_Mutation p.H412P 0.40 tolerated(0.09) benign(0.397) TCGA-UZ-A9PZ-01 6 51893014 51893014 A G PKHD1 Missense_Mutation p.L1167P 0.45 deleterious(0) probably_damaging(0.966) TCGA-UZ-A9PZ-01 6 56464935 56464935 C G DST Missense_Mutation p.G1253R 0.37 possibly_damaging(0.885) TCGA-UZ-A9PZ-01 7 23357270 23357270 C A IGF2BP3 Missense_Mutation p.E461D 0.42 deleterious(0.02) possibly_damaging(0.511) TCGA-UZ-A9PZ-01 7 30963176 30963176 G A AQP1 Missense_Mutation p.G248S 0.46 tolerated(0.13) probably_damaging(0.999) TCGA-UZ-A9PZ-01 7 95750615 95750615 C - SLC25A13 Frame_Shift_Del p.G640Afs*61 0.30 TCGA-UZ-A9PZ-01 7 99950086 99950086 C G PILRB 5'UTR 0.20 TCGA-UZ-A9PZ-01 8 10555296 10555296 G A C8orf74 Silent p.E143E 0.36 TCGA-UZ-A9PZ-01 8 17409383 17409383 C T SLC7A2 Missense_Mutation p.P355S 0.42 deleterious(0) probably_damaging(0.996) TCGA-UZ-A9PZ-01 8 77896129 77896129 G A PEX2 Nonsense_Mutation p.Q96* 0.33 TCGA-UZ-A9PZ-01 9 140510091 140510091 G C C9orf37 3'UTR 0.29 TCGA-UZ-A9PZ-01 9 96435951 96435951 G C PHF2 Silent p.L811L 0.41 TCGA-UZ-A9PZ-01 X 155005301 155005301 T A SPRY3 3'UTR 0.63 TCGA-UZ-A9Q0-01 10 112657797 112657797 G T PDCD4 Missense_Mutation p.R454L 0.08 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9Q0-01 10 54053646 54053646 G T PRKG1 Missense_Mutation p.D683Y 0.49 deleterious(0) probably_damaging(1) TCGA-UZ-A9Q0-01 10 75548546 75548546 T - ZSWIM8 Frame_Shift_Del p.W111Gfs*36 0.24 TCGA-UZ-A9Q0-01 11 118772132 118772132 T C BCL9L Missense_Mutation p.M774V 0.50 possibly_damaging(0.824) TCGA-UZ-A9Q0-01 11 134038058 134038058 G C NCAPD3 Missense_Mutation p.L1136V 0.60 tolerated(0.12) benign(0.039) TCGA-UZ-A9Q0-01 11 16816490 16816490 A G PLEKHA7 Missense_Mutation p.F829L 0.43 deleterious(0.05) benign(0.06) TCGA-UZ-A9Q0-01 11 47198367 47198367 A G ARFGAP2 Missense_Mutation p.L13P 0.49 deleterious(0) possibly_damaging(0.729) TCGA-UZ-A9Q0-01 12 100717393 100717393 T A SCYL2 Missense_Mutation p.C496S 0.36 deleterious(0.04) benign(0.045) TCGA-UZ-A9Q0-01 12 122295709 122295709 A G HPD Missense_Mutation p.F16S 0.43 deleterious(0) probably_damaging(0.988) TCGA-UZ-A9Q0-01 12 122691299 122691299 A T B3GNT4 Silent p.P167P 0.38 TCGA-UZ-A9Q0-01 12 122710606 122710606 G A DIABLO 5'UTR 0.48 TCGA-UZ-A9Q0-01 12 133385055 133385055 C A GOLGA3 Missense_Mutation p.R200S 0.49 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-UZ-A9Q0-01 12 51382103 51382103 C T SLC11A2 3'UTR 0.37 TCGA-UZ-A9Q0-01 12 52789833 52789833 C T KRT82 Missense_Mutation p.A418T 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-UZ-A9Q0-01 12 56115699 56115699 A C RDH5 Missense_Mutation p.K179N 0.39 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9Q0-01 12 56720417 56720417 A G PAN2 Missense_Mutation p.S416P 0.41 tolerated(0.28) benign(0.445) TCGA-UZ-A9Q0-01 12 57033773 57033773 C A ATP5B Missense_Mutation p.K426N 0.37 deleterious_low_confidence(0.02) probably_damaging(0.92) TCGA-UZ-A9Q0-01 12 58023866 58023866 G A B4GALNT1 Intron 0.53 TCGA-UZ-A9Q0-01 13 99030132 99030132 T C FARP1 Silent p.N152N 0.43 TCGA-UZ-A9Q0-01 14 58675768 58675768 A G ACTR10 Silent p.V95V 0.34 TCGA-UZ-A9Q0-01 14 62229244 62229244 C T SNAPC1 Silent p.D22D 0.32 TCGA-UZ-A9Q0-01 14 64595265 64595265 G A SYNE2 Silent p.Q4671Q 0.39 TCGA-UZ-A9Q0-01 14 67646373 67646373 C A GPHN Missense_Mutation p.P720T 0.52 deleterious(0.05) probably_damaging(1) TCGA-UZ-A9Q0-01 14 74824607 74824607 T A VRTN Missense_Mutation p.L374Q 0.43 tolerated(0.37) benign(0.03) TCGA-UZ-A9Q0-01 14 94582886 94582886 G C IFI27 3'UTR 0.40 TCGA-UZ-A9Q0-01 15 42298282 42298282 A G PLA2G4E Missense_Mutation p.V144A 0.52 tolerated(0.14) benign(0.422) TCGA-UZ-A9Q0-01 15 96875660 96875660 G T NR2F2 Missense_Mutation p.R109M 0.37 deleterious(0) probably_damaging(0.992) TCGA-UZ-A9Q0-01 16 68914532 68914532 A C TANGO6 Missense_Mutation p.K459T 0.25 deleterious(0) probably_damaging(0.996) TCGA-UZ-A9Q0-01 16 88039824 88039824 G A BANP Missense_Mutation p.S195N 0.55 tolerated_low_confidence(0.43) benign(0.002) TCGA-UZ-A9Q0-01 17 35609953 35609953 C A ACACA Silent p.V612V 0.63 TCGA-UZ-A9Q0-01 17 38975810 38975810 A G KRT10 Silent p.N444N 0.57 TCGA-UZ-A9Q0-01 17 4891567 4891567 A G INCA1 3'UTR 0.60 TCGA-UZ-A9Q0-01 17 72733000 72733000 C A RAB37 5'Flank 0.25 TCGA-UZ-A9Q0-01 17 74398143 74398143 A G UBE2O Splice_Site p.X250_splice 0.64 TCGA-UZ-A9Q0-01 17 9066277 9066277 G T NTN1 Missense_Mutation p.R389L 0.61 deleterious(0) probably_damaging(0.949) TCGA-UZ-A9Q0-01 19 11138579 11138579 T G SMARCA4 Missense_Mutation p.M1112R 0.49 possibly_damaging(0.863) TCGA-UZ-A9Q0-01 19 39664225 39664225 C A PAK4 Missense_Mutation p.H225N 0.32 tolerated(0.46) benign(0.009) TCGA-UZ-A9Q0-01 19 56895643 56895643 T - ZNF582 Frame_Shift_Del p.Q381Hfs*58 0.29 TCGA-UZ-A9Q0-01 1 113657046 113657047 - A LRIG2 Intron 0.35 TCGA-UZ-A9Q0-01 1 145609230 145609230 A T POLR3C Missense_Mutation p.L36Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9Q0-01 1 150325324 150325324 C A PRPF3 Silent p.R641R 0.41 TCGA-UZ-A9Q0-01 1 150551933 150551933 C A MCL1 Missense_Mutation p.S25I 0.41 tolerated_low_confidence(0.07) benign(0.037) TCGA-UZ-A9Q0-01 1 151748012 151748012 C G TDRKH Missense_Mutation p.Q430H 0.50 tolerated(0.15) benign(0.008) TCGA-UZ-A9Q0-01 1 176863825 176863825 C G ASTN1 Missense_Mutation p.R938P 0.39 deleterious(0) possibly_damaging(0.842) TCGA-UZ-A9Q0-01 1 178063695 178063695 T C RASAL2 Missense_Mutation p.L23P 0.46 deleterious_low_confidence(0) possibly_damaging(0.449) TCGA-UZ-A9Q0-01 1 228528466 228528466 G A OBSCN Silent p.A6815A 0.47 TCGA-UZ-A9Q0-01 1 26488081 26488081 A G FAM110D Missense_Mutation p.E100G 0.49 deleterious(0.03) probably_damaging(0.997) TCGA-UZ-A9Q0-01 1 27105645 27105645 G - ARID1A Frame_Shift_Del p.V1753Cfs*17 0.28 TCGA-UZ-A9Q0-01 1 37948519 37948519 A T ZC3H12A Silent p.T369T 0.48 TCGA-UZ-A9Q0-01 21 17214827 17214829 GAA - USP25 In_Frame_Del p.E769del 0.58 TCGA-UZ-A9Q0-01 22 21996638 21996638 G A SDF2L1 Missense_Mutation p.G5S 0.48 tolerated_low_confidence(0.38) benign(0.002) TCGA-UZ-A9Q0-01 22 51017427 51017436 CAGCACGGGG - CHKB 3'UTR 0.53 TCGA-UZ-A9Q0-01 2 135710229 135710229 T C CCNT2 Missense_Mutation p.L241P 0.42 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9Q0-01 2 46988766 46988766 T C SOCS5 3'UTR 0.48 TCGA-UZ-A9Q0-01 2 55054726 55054726 C A EML6 Silent p.A183A 0.43 TCGA-UZ-A9Q0-01 2 74783112 74783112 G C DOK1 Missense_Mutation p.R182S 0.42 tolerated(0.77) benign(0.007) TCGA-UZ-A9Q0-01 2 96993651 96993651 A G ITPRIPL1 Missense_Mutation p.S436G 0.38 tolerated(0.29) benign(0.167) TCGA-UZ-A9Q0-01 3 121100364 121100367 ATGG - STXBP5L Frame_Shift_Del p.M882Yfs*10 0.22 TCGA-UZ-A9Q0-01 3 124632081 124632081 C T MUC13 Missense_Mutation p.S363N 0.25 tolerated(0.12) possibly_damaging(0.78) TCGA-UZ-A9Q0-01 3 128852942 128852942 T C ISY1 Missense_Mutation p.N235S 0.60 tolerated(0.34) benign(0.021) TCGA-UZ-A9Q0-01 3 183756384 183756384 C T HTR3D Silent p.G369G 0.26 TCGA-UZ-A9Q0-01 3 184062687 184062687 C A FAM131A Missense_Mutation p.Q344K 0.52 tolerated(1) benign(0.001) TCGA-UZ-A9Q0-01 3 5229451 5229451 C A AC026202.1 Missense_Mutation p.G178C 0.50 probably_damaging(0.985) TCGA-UZ-A9Q0-01 3 65342733 65342733 G - MAGI1 Frame_Shift_Del p.R1237Gfs*198 0.28 TCGA-UZ-A9Q0-01 4 113509073 113509073 G C C4orf21 Missense_Mutation p.S1047C 0.41 tolerated(0.21) possibly_damaging(0.54) TCGA-UZ-A9Q0-01 4 41259527 41259527 G - UCHL1 Intron 0.37 TCGA-UZ-A9Q0-01 4 995927 995927 C T IDUA Missense_Mutation p.T317I 0.45 tolerated(0.06) probably_damaging(0.999) TCGA-UZ-A9Q0-01 5 147484531 147484531 G A SPINK5 Missense_Mutation p.A483T 0.46 tolerated(0.08) benign(0.331) TCGA-UZ-A9Q0-01 5 159831848 159831848 C A SLU7 Nonsense_Mutation p.E478* 0.38 TCGA-UZ-A9Q0-01 5 176018208 176018208 C A CDHR2 Intron 0.37 TCGA-UZ-A9Q0-01 5 176831333 176831333 C T F12 Silent p.Q294Q 0.51 TCGA-UZ-A9Q0-01 6 152462387 152462387 C T SYNE1 Silent p.E8399E 0.42 TCGA-UZ-A9Q0-01 6 25665199 25665199 A C SCGN Missense_Mutation p.E92A 0.34 deleterious(0) probably_damaging(1) TCGA-UZ-A9Q0-01 6 26199103 26199103 A C HIST1H2AD Missense_Mutation p.S123R 0.45 deleterious_low_confidence(0.04) benign(0.005) TCGA-UZ-A9Q0-01 6 31797669 31797669 A G HSPA1B 3'UTR 0.47 TCGA-UZ-A9Q0-01 6 33173455 33173455 G A HSD17B8 Silent p.K173K 0.42 TCGA-UZ-A9Q0-01 7 102915987 102915987 C A DPY19L2P2 RNA 0.29 TCGA-UZ-A9Q0-01 7 129122755 129122755 T C STRIP2 Missense_Mutation p.Y708H 0.58 deleterious(0) probably_damaging(0.992) TCGA-UZ-A9Q0-01 7 149499004 149499004 C T SSPO RNA 0.37 TCGA-UZ-A9Q0-01 7 24742409 24742409 T - DFNA5 Frame_Shift_Del p.K409Nfs*28 0.39 TCGA-UZ-A9Q0-01 8 118811877 118811877 G T EXT1 3'UTR 0.36 TCGA-UZ-A9Q0-01 9 130570589 130570589 C A FPGS Nonsense_Mutation p.S274* 0.38 TCGA-UZ-A9Q0-01 9 91150348 91150348 C T NXNL2 5'UTR 0.38 TCGA-UZ-A9Q1-01 10 45500579 45500579 T C ZNF22 3'UTR 0.82 TCGA-UZ-A9Q1-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.64 TCGA-UZ-A9Q1-01 10 89653783 89653783 T A PTEN Nonsense_Mutation p.Y27* 0.82 TCGA-UZ-A9Q1-01 11 122830003 122830007 GACTC - C11orf63 Frame_Shift_Del p.T730Sfs*20 0.39 TCGA-UZ-A9Q1-01 11 122930962 122930962 A G HSPA8 Silent p.A142A 0.54 TCGA-UZ-A9Q1-01 11 58477785 58477785 G T GLYAT Intron 0.45 TCGA-UZ-A9Q1-01 11 62327757 62327757 T A EEF1G Missense_Mutation p.T343S 0.37 tolerated(0.57) benign(0.022) TCGA-UZ-A9Q1-01 11 67219103 67219103 G C GPR152 Missense_Mutation p.Q365E 0.41 deleterious_low_confidence(0.01) benign(0.214) TCGA-UZ-A9Q1-01 11 93523880 93523880 G A MED17 Silent p.E186E 0.44 TCGA-UZ-A9Q1-01 11 9834085 9834085 G A SBF2 Silent p.F1383F 0.38 TCGA-UZ-A9Q1-01 12 15776128 15776128 G C EPS8 Silent p.V773V 0.54 TCGA-UZ-A9Q1-01 12 41966314 41966314 A T PDZRN4 Missense_Mutation p.N578I 0.28 tolerated(0.15) benign(0.082) TCGA-UZ-A9Q1-01 12 53899550 53899550 C T TARBP2 Silent p.L287L 0.23 TCGA-UZ-A9Q1-01 12 6948273 6948288 GGCACACGTGGGCACC - LEPREL2 Frame_Shift_Del p.W671Lfs*9 0.24 TCGA-UZ-A9Q1-01 12 78516178 78516178 C T NAV3 Missense_Mutation p.T1403M 0.09 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9Q1-01 13 103459768 103459768 G A BIVM-ERCC5 Missense_Mutation p.G23S 0.40 tolerated_low_confidence(0.08) probably_damaging(0.97) TCGA-UZ-A9Q1-01 13 109379841 109379841 C T MYO16 Silent p.V117V 0.43 TCGA-UZ-A9Q1-01 13 25895072 25895072 G C NUPL1 Missense_Mutation p.E264D 0.36 tolerated(0.25) benign(0.155) TCGA-UZ-A9Q1-01 14 23242825 23242825 A T SLC7A7 Silent p.S510S 0.44 TCGA-UZ-A9Q1-01 14 31604218 31604218 T C HECTD1 Missense_Mutation p.I1146M 0.38 deleterious(0) possibly_damaging(0.545) TCGA-UZ-A9Q1-01 14 77494313 77494313 T G IRF2BPL 5'UTR 0.41 TCGA-UZ-A9Q1-01 15 34295241 34295241 C A AVEN Missense_Mutation p.S146I 0.40 deleterious(0.01) benign(0.256) TCGA-UZ-A9Q1-01 15 51783940 51783940 G A DMXL2 Silent p.V1596V 0.45 TCGA-UZ-A9Q1-01 15 79088990 79088991 - T ADAMTS7 Frame_Shift_Ins p.M254Nfs*11 0.31 TCGA-UZ-A9Q1-01 15 85360356 85360356 C T ALPK3 Silent p.C93C 0.31 TCGA-UZ-A9Q1-01 15 90340878 90340878 C A ANPEP Missense_Mutation p.W695C 0.48 deleterious(0) probably_damaging(0.997) TCGA-UZ-A9Q1-01 15 90349261 90349261 T C ANPEP Missense_Mutation p.E185G 0.47 deleterious(0) possibly_damaging(0.519) TCGA-UZ-A9Q1-01 15 92981704 92981704 A - ST8SIA2 Frame_Shift_Del p.N138Tfs*12 0.24 TCGA-UZ-A9Q1-01 16 20471477 20471477 G T ACSM2A Missense_Mutation p.W14L 0.55 deleterious(0.03) possibly_damaging(0.717) TCGA-UZ-A9Q1-01 16 24800981 24800981 A T TNRC6A Missense_Mutation p.N340Y 0.25 tolerated(0.05) possibly_damaging(0.664) TCGA-UZ-A9Q1-01 16 4745104 4745104 A G NUDT16L1 Missense_Mutation p.K187R 0.24 tolerated(0.27) benign(0.204) TCGA-UZ-A9Q1-01 16 67719468 67719468 C T GFOD2 Missense_Mutation p.A51T 0.29 tolerated(0.07) benign(0.042) TCGA-UZ-A9Q1-01 17 17699195 17699195 A T RAI1 Missense_Mutation p.K978M 0.40 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-UZ-A9Q1-01 17 18882130 18882130 A G FAM83G Silent p.N283N 0.46 TCGA-UZ-A9Q1-01 17 1989066 1989066 T C SMG6 Missense_Mutation p.M1163V 0.10 tolerated(0.38) benign(0.052) TCGA-UZ-A9Q1-01 17 27047892 27047892 G A RPL23A Missense_Mutation p.A65T 0.40 tolerated(0.52) benign(0.022) TCGA-UZ-A9Q1-01 17 39538610 39538610 C T KRT34 Silent p.K5K 0.37 TCGA-UZ-A9Q1-01 17 72691173 72691173 A T CD300LF 3'UTR 0.32 TCGA-UZ-A9Q1-01 17 73499266 73499266 T C CASKIN2 Missense_Mutation p.E630G 0.12 tolerated(0.09) benign(0.243) TCGA-UZ-A9Q1-01 19 14952156 14952157 - A OR7A10 Frame_Shift_Ins p.C179Lfs*2 0.28 TCGA-UZ-A9Q1-01 19 15354087 15354087 G A BRD4 Silent p.Y931Y 0.57 TCGA-UZ-A9Q1-01 19 3907799 3907799 G C ATCAY Silent p.T142T 0.44 TCGA-UZ-A9Q1-01 19 40406043 40406043 G T FCGBP Silent p.L1601L 0.19 TCGA-UZ-A9Q1-01 19 49489290 49489290 G A GYS1 Silent p.F165F 0.32 TCGA-UZ-A9Q1-01 19 49652538 49652538 T G PPFIA3 Missense_Mutation p.F1104V 0.40 deleterious(0.01) possibly_damaging(0.525) TCGA-UZ-A9Q1-01 19 7810643 7810643 T A CD209 Missense_Mutation p.Y170F 0.35 tolerated(0.11) possibly_damaging(0.636) TCGA-UZ-A9Q1-01 1 15438985 15438985 C T KAZN Missense_Mutation p.T704M 0.40 tolerated(0.09) probably_damaging(0.948) TCGA-UZ-A9Q1-01 1 15901428 15901428 G A DNAJC16 3'Flank 0.38 TCGA-UZ-A9Q1-01 1 180843044 180843044 A C XPR1 Missense_Mutation p.I592L 0.45 tolerated(0.83) benign(0.006) TCGA-UZ-A9Q1-01 1 202572220 202572220 C G SYT2 Silent p.L124L 0.40 TCGA-UZ-A9Q1-01 1 39775914 39775914 T C MACF1 Intron 0.44 TCGA-UZ-A9Q1-01 1 6556604 6556604 C T PLEKHG5 Silent p.K33K 0.38 TCGA-UZ-A9Q1-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.12 TCGA-UZ-A9Q1-01 20 30064205 30064205 T - REM1 5'UTR 0.27 TCGA-UZ-A9Q1-01 20 307822 307822 C G SOX12 3'UTR 0.35 TCGA-UZ-A9Q1-01 20 51871547 51871547 T G TSHZ2 Missense_Mutation p.L517W 0.52 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9Q1-01 20 57568776 57568776 A T NELFCD Missense_Mutation p.K531M 0.46 deleterious(0.02) probably_damaging(0.947) TCGA-UZ-A9Q1-01 20 60992327 60992327 C A RBBP8NL Silent p.R51R 0.35 TCGA-UZ-A9Q1-01 20 62168575 62168575 C T PTK6 Silent p.A31A 0.30 TCGA-UZ-A9Q1-01 21 43411959 43411959 A G ZBTB21 Missense_Mutation p.V749A 0.48 deleterious(0.04) possibly_damaging(0.701) TCGA-UZ-A9Q1-01 22 29091202 29091202 G A CHEK2 Missense_Mutation p.H473Y 0.39 tolerated(0.11) benign(0.002) TCGA-UZ-A9Q1-01 22 32021843 32021843 T C PISD 5'UTR 0.38 TCGA-UZ-A9Q1-01 22 41488677 41488677 G T EP300 5'UTR 0.14 TCGA-UZ-A9Q1-01 22 41488678 41488678 G T EP300 5'UTR 0.15 TCGA-UZ-A9Q1-01 22 41923245 41923267 ACGGTGCCCTCCTCTGCCTTATA - POLR3H 3'UTR 0.24 TCGA-UZ-A9Q1-01 22 50354605 50354605 T C PIM3 Missense_Mutation p.S4P 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.836) TCGA-UZ-A9Q1-01 2 10922432 10922436 GCGTT - ATP6V1C2 Frame_Shift_Del p.K375Nfs*14 0.29 TCGA-UZ-A9Q1-01 2 148683732 148683732 T - ACVR2A Splice_Site p.X449_splice 0.22 TCGA-UZ-A9Q1-01 2 198643755 198643755 C T BOLL Silent p.Q67Q 0.41 TCGA-UZ-A9Q1-01 2 214182127 214182127 A T SPAG16 Intron 0.30 TCGA-UZ-A9Q1-01 2 38298164 38298164 A G CYP1B1 Missense_Mutation p.F445L 0.38 deleterious(0) probably_damaging(0.999) TCGA-UZ-A9Q1-01 2 9666345 9666345 A G ADAM17 Silent p.A216A 0.26 TCGA-UZ-A9Q1-01 2 97217448 97217448 C A ARID5A Missense_Mutation p.R395S 0.40 deleterious(0.02) benign(0.353) TCGA-UZ-A9Q1-01 3 122289480 122289480 A T DTX3L Missense_Mutation p.D705V 0.58 deleterious(0) probably_damaging(0.966) TCGA-UZ-A9Q1-01 3 35723205 35723205 G C ARPP21 Splice_Site 0.57 TCGA-UZ-A9Q1-01 3 45942933 45942933 A T CCR9 Missense_Mutation p.K218M 0.41 deleterious(0) possibly_damaging(0.897) TCGA-UZ-A9Q1-01 4 106473844 106473844 A C ARHGEF38 5'UTR 0.34 TCGA-UZ-A9Q1-01 4 110433149 110433169 TGCCGATCCTGTCGAACGTAT - SEC24B In_Frame_Del p.C605_Y611del 0.34 TCGA-UZ-A9Q1-01 4 152021725 152021725 A C RPS3A Silent p.R51R 0.45 TCGA-UZ-A9Q1-01 4 159573058 159573058 G T RXFP1 Missense_Mutation p.G709C 0.35 deleterious(0.01) benign(0.353) TCGA-UZ-A9Q1-01 4 159753052 159753054 ATG - FNIP2 In_Frame_Del p.M142del 0.39 TCGA-UZ-A9Q1-01 4 56818348 56818348 C T CEP135 Nonsense_Mutation p.Q18* 0.37 TCGA-UZ-A9Q1-01 4 84502861 84502861 G T AGPAT9 Nonsense_Mutation p.E119* 0.42 TCGA-UZ-A9Q1-01 5 148756456 148756456 G A IL17B Missense_Mutation p.R52W 0.38 deleterious(0.01) benign(0.003) TCGA-UZ-A9Q1-01 5 32791043 32791043 T C NPR3 3'UTR 0.43 TCGA-UZ-A9Q1-01 5 65016544 65016544 T C SGTB Missense_Mutation p.S31G 0.47 tolerated(0.1) benign(0.049) TCGA-UZ-A9Q1-01 5 76926470 76926470 C T OTP Silent p.L199L 0.38 TCGA-UZ-A9Q1-01 5 79743873 79743873 C T ZFYVE16 Missense_Mutation p.S918F 0.37 tolerated(0.71) benign(0.033) TCGA-UZ-A9Q1-01 6 154360579 154360579 T A OPRM1 Missense_Mutation p.L60Q 0.38 deleterious_low_confidence(0.01) benign(0.001) TCGA-UZ-A9Q1-01 6 154732219 154732219 A C CNKSR3 Silent p.P376P 0.40 TCGA-UZ-A9Q1-01 6 167438317 167438317 A G FGFR1OP Missense_Mutation p.D285G 0.41 deleterious(0) possibly_damaging(0.765) TCGA-UZ-A9Q1-01 6 24423170 24423170 T C MRS2 Silent p.H371H 0.32 TCGA-UZ-A9Q1-01 6 88304263 88304263 T C ORC3 Intron 0.33 TCGA-UZ-A9Q1-01 7 150779559 150779559 G C TMUB1 Missense_Mutation p.T31R 0.59 deleterious(0) probably_damaging(0.998) TCGA-UZ-A9Q1-01 7 151853289 151853289 C T KMT2C Splice_Site p.X3938_splice 0.64 TCGA-UZ-A9Q1-01 7 34971256 34971256 C A DPY19L1 Missense_Mutation p.D653Y 0.28 deleterious(0) possibly_damaging(0.853) TCGA-UZ-A9Q1-01 7 44150559 44150559 C A AEBP1 Silent p.L511L 0.58 TCGA-UZ-A9Q1-01 7 77256523 77256523 T A PTPN12 Silent p.T509T 0.57 TCGA-UZ-A9Q1-01 7 92885845 92885845 A G CCDC132 Missense_Mutation p.I108V 0.21 tolerated(0.23) benign(0.297) TCGA-UZ-A9Q1-01 8 144644432 144644432 T A GSDMD Silent p.G350G 0.41 TCGA-UZ-A9Q1-01 8 145151503 145151503 T C CYC1 Missense_Mutation p.Y210H 0.46 deleterious(0.01) probably_damaging(0.98) TCGA-UZ-A9Q1-01 8 22432205 22432205 C T SORBS3 Silent p.F660F 0.42 TCGA-UZ-A9Q1-01 8 30537066 30537066 A G GSR Missense_Mutation p.S514P 0.39 deleterious(0) probably_damaging(1) TCGA-UZ-A9Q1-01 9 109734426 109734426 G C ZNF462 Missense_Mutation p.V2190L 0.38 benign(0.117) TCGA-UZ-A9Q1-01 9 131832215 131832215 C T FAM73B Nonsense_Mutation p.Q516* 0.28 TCGA-UZ-A9Q1-01 9 134464315 134464315 C T RAPGEF1 Missense_Mutation p.V808M 0.46 deleterious(0) probably_damaging(0.986) TCGA-UZ-A9Q1-01 9 6012678 6012678 G T RANBP6 Missense_Mutation p.T977K 0.34 tolerated(0.07) benign(0.36) TCGA-UZ-A9Q1-01 9 6012680 6012680 A G RANBP6 Silent p.A976A 0.36 TCGA-UZ-A9Q1-01 9 77300383 77300383 T A RORB Missense_Mutation p.I410K 0.42 deleterious(0.03) benign(0.279) TCGA-UZ-A9Q1-01 9 84609332 84609332 G A SPATA31D1 Missense_Mutation p.R1316H 0.39 tolerated(0.55) benign(0) TCGA-UZ-A9Q1-01 9 88937287 88937287 G T ZCCHC6 Missense_Mutation p.T994K 0.33 deleterious(0) benign(0.392) TCGA-UZ-A9Q1-01 9 95027351 95027351 G A IARS Silent p.I520I 0.40 TCGA-UZ-A9Q1-01 X 35821036 35821036 C T MAGEB16 Silent p.F241F 0.46 TCGA-UZ-A9Q1-01 X 77254011 77254011 C T ATP7A Missense_Mutation p.S458L 0.40 tolerated(0.26) benign(0.005) TCGA-V9-A7HT-01 10 101996700 101996700 A C CWF19L1 Silent p.S427S 0.30 TCGA-V9-A7HT-01 10 124923364 124923366 TAC AT BUB3 3'UTR 0.31 TCGA-V9-A7HT-01 10 25755626 25755626 G C GPR158 Missense_Mutation p.G461A 0.13 deleterious(0) probably_damaging(1) TCGA-V9-A7HT-01 10 28970452 28970452 T C BAMBI Silent p.S114S 0.35 TCGA-V9-A7HT-01 10 5788734 5788734 G T FAM208B Missense_Mutation p.G1117V 0.55 tolerated(0.1) possibly_damaging(0.878) TCGA-V9-A7HT-01 10 91144274 91144274 T C IFIT1B Missense_Mutation p.Y402H 0.45 deleterious(0) probably_damaging(0.992) TCGA-V9-A7HT-01 11 128844881 128844883 GAA - ARHGAP32 In_Frame_Del p.F723del 0.48 TCGA-V9-A7HT-01 11 4825301 4825301 C A OR52R1 Missense_Mutation p.V104L 0.41 tolerated(0.22) benign(0.011) TCGA-V9-A7HT-01 11 64014061 64014061 A T PPP1R14B Missense_Mutation p.Y29N 0.47 tolerated(0.06) probably_damaging(0.916) TCGA-V9-A7HT-01 12 117657915 117657915 C T NOS1 Missense_Mutation p.A1413T 0.26 tolerated(0.52) benign(0.001) TCGA-V9-A7HT-01 12 3747327 3747327 G A EFCAB4B Missense_Mutation p.P522L 0.36 tolerated(0.05) benign(0.082) TCGA-V9-A7HT-01 12 49062931 49062931 C A KANSL2 Missense_Mutation p.L278F 0.34 tolerated(0.46) benign(0.078) TCGA-V9-A7HT-01 14 102484912 102484912 C T DYNC1H1 Missense_Mutation p.P2768S 0.25 benign(0.377) TCGA-V9-A7HT-01 14 105267880 105267880 G C ZBTB42 Missense_Mutation p.G116R 0.30 tolerated(0.13) probably_damaging(0.947) TCGA-V9-A7HT-01 14 19562079 19562079 A G POTEG Missense_Mutation p.N299S 0.14 tolerated(0.1) benign(0.12) TCGA-V9-A7HT-01 14 22102804 22102804 G A OR10G2 Silent p.Y65Y 0.25 TCGA-V9-A7HT-01 14 23393691 23393691 A T PRMT5 Missense_Mutation p.V358D 0.22 tolerated(0.23) benign(0.175) TCGA-V9-A7HT-01 14 24760391 24760391 C T DHRS1 Silent p.L253L 0.09 TCGA-V9-A7HT-01 14 36104729 36104729 G C RALGAPA1 Missense_Mutation p.H1412D 0.17 tolerated(0.18) benign(0.217) TCGA-V9-A7HT-01 14 70714100 70714100 G T ADAM21P1 RNA 0.31 TCGA-V9-A7HT-01 14 80328398 80328398 A G NRXN3 3'UTR 0.14 TCGA-V9-A7HT-01 15 55722699 55722699 T C DYX1C1 3'UTR 0.45 TCGA-V9-A7HT-01 15 73409078 73409079 - A NEO1 Frame_Shift_Ins p.F110Yfs*12 0.15 TCGA-V9-A7HT-01 15 91172533 91172533 C T CRTC3 Silent p.S345S 0.17 TCGA-V9-A7HT-01 16 1486698 1486698 G T CCDC154 Missense_Mutation p.Q478K 0.20 tolerated(0.66) benign(0.047) TCGA-V9-A7HT-01 16 15129917 15129917 A G PDXDC1 Missense_Mutation p.S718G 0.13 deleterious_low_confidence(0.03) benign(0.076) TCGA-V9-A7HT-01 16 31488190 31488190 C T TGFB1I1 Silent p.H326H 0.08 TCGA-V9-A7HT-01 16 68012250 68012250 G C DPEP3 Missense_Mutation p.D227E 0.23 deleterious(0.01) probably_damaging(0.919) TCGA-V9-A7HT-01 16 68373404 68373404 T G PRMT7 Missense_Mutation p.I228M 0.37 tolerated(0.07) possibly_damaging(0.664) TCGA-V9-A7HT-01 16 68716217 68716217 G T CDH3 Missense_Mutation p.V337L 0.18 deleterious(0.01) possibly_damaging(0.751) TCGA-V9-A7HT-01 16 75127548 75127548 C G ZNRF1 Missense_Mutation p.P168R 0.33 deleterious(0) probably_damaging(0.984) TCGA-V9-A7HT-01 17 10608320 10608320 T A ADPRM Missense_Mutation p.V26D 0.26 deleterious(0) probably_damaging(0.994) TCGA-V9-A7HT-01 17 26906801 26906801 C G SPAG5 Missense_Mutation p.R951P 0.28 deleterious(0.02) probably_damaging(1) TCGA-V9-A7HT-01 17 33289174 33289174 T A ZNF830 Missense_Mutation p.S197T 0.15 tolerated(0.56) benign(0.003) TCGA-V9-A7HT-01 17 33289175 33289175 C T ZNF830 Missense_Mutation p.S197L 0.15 tolerated(0.2) benign(0.002) TCGA-V9-A7HT-01 17 44590509 44590509 C T LRRC37A2 Missense_Mutation p.P144L 0.32 tolerated(0.11) probably_damaging(0.981) TCGA-V9-A7HT-01 17 56635170 56635170 C T TEX14 Missense_Mutation p.E1483K 0.07 deleterious(0.03) benign(0.273) TCGA-V9-A7HT-01 17 76045429 76045429 A G TNRC6C Missense_Mutation p.I96V 0.09 tolerated(0.25) benign(0.055) TCGA-V9-A7HT-01 18 21116701 21116701 T G NPC1 Missense_Mutation p.I1061L 0.21 tolerated(0.28) benign(0.006) TCGA-V9-A7HT-01 18 43666115 43666115 C T ATP5A1 Missense_Mutation p.V465M 0.11 deleterious_low_confidence(0.02) benign(0.241) TCGA-V9-A7HT-01 18 9221917 9221917 T C ANKRD12 Missense_Mutation p.V288A 0.12 deleterious(0.03) probably_damaging(1) TCGA-V9-A7HT-01 19 17389692 17389692 T C BABAM1 Silent p.G275G 0.06 TCGA-V9-A7HT-01 19 18377324 18377324 T A KIAA1683 Silent p.T342T 0.25 TCGA-V9-A7HT-01 19 38910519 38910519 C G RASGRP4 Missense_Mutation p.R215P 0.16 deleterious(0) probably_damaging(0.967) TCGA-V9-A7HT-01 19 42879872 42879872 G A MEGF8 Missense_Mutation p.V2428M 0.12 deleterious(0) probably_damaging(0.999) TCGA-V9-A7HT-01 19 9086492 9086492 T C MUC16 Missense_Mutation p.T1775A 0.18 unknown(0) TCGA-V9-A7HT-01 1 159778131 159778131 A T FCRL6 Silent p.A72A 0.19 TCGA-V9-A7HT-01 1 161018636 161018638 CTT - ARHGAP30 In_Frame_Del p.K725del 0.14 TCGA-V9-A7HT-01 1 16475488 16475488 A G EPHA2 Missense_Mutation p.C70R 0.09 deleterious(0) probably_damaging(1) TCGA-V9-A7HT-01 1 171956839 171956839 T - DNM3 Frame_Shift_Del p.F94Lfs*15 0.21 TCGA-V9-A7HT-01 1 53712713 53712713 G A LRP8 Missense_Mutation p.L957F 0.14 deleterious_low_confidence(0.01) benign(0.023) TCGA-V9-A7HT-01 1 59141149 59141150 CA T MYSM1 Frame_Shift_Del p.M498Nfs*21 0.13 TCGA-V9-A7HT-01 1 86167916 86167916 T A ZNHIT6 Missense_Mutation p.R315W 0.22 deleterious(0) benign(0.103) TCGA-V9-A7HT-01 20 45003925 45003925 C T ELMO2 Missense_Mutation p.E339K 0.08 tolerated(0.2) benign(0.34) TCGA-V9-A7HT-01 20 56730567 56730567 T A C20orf85 Missense_Mutation p.I65N 0.10 deleterious(0) possibly_damaging(0.646) TCGA-V9-A7HT-01 21 33690029 33690033 GGTCT - URB1 Frame_Shift_Del p.E1996Dfs*6 0.14 TCGA-V9-A7HT-01 22 23653908 23653908 C T BCR Silent p.Y1069Y 0.14 TCGA-V9-A7HT-01 22 38884294 38884294 A G DDX17 Intron 0.55 TCGA-V9-A7HT-01 2 100015914 100015914 T C EIF5B 3'UTR 0.55 TCGA-V9-A7HT-01 2 125547712 125547712 A - CNTNAP5 Frame_Shift_Del p.E997Rfs*22 0.41 TCGA-V9-A7HT-01 2 170058231 170058232 - A LRP2 Frame_Shift_Ins p.M2787Yfs*4 0.21 TCGA-V9-A7HT-01 2 179397361 179397362 - A TTN Frame_Shift_Ins p.E34661* 0.12 TCGA-V9-A7HT-01 2 179456111 179456111 G T TTN Missense_Mutation p.T20114N 0.34 TCGA-V9-A7HT-01 2 197649653 197649653 T - GTF3C3 Frame_Shift_Del p.I348* 0.17 TCGA-V9-A7HT-01 2 234638590 234638590 T C UGT1A3 Missense_Mutation p.M273T 0.36 tolerated(0.09) possibly_damaging(0.513) TCGA-V9-A7HT-01 2 236792018 236792018 G A AGAP1 Silent p.S360S 0.23 TCGA-V9-A7HT-01 2 42557389 42557389 G A EML4 3'UTR 0.16 TCGA-V9-A7HT-01 3 178960646 178960646 G C KCNMB3 3'UTR 0.13 TCGA-V9-A7HT-01 3 183017880 183017880 C T MCF2L2 Silent p.R406R 0.13 TCGA-V9-A7HT-01 3 27346274 27346275 - A NEK10 Frame_Shift_Ins p.W331Lfs*20 0.25 TCGA-V9-A7HT-01 3 42304950 42304950 A C CCK Missense_Mutation p.L58R 0.05 deleterious(0) probably_damaging(1) TCGA-V9-A7HT-01 3 58135898 58135898 G A FLNB Missense_Mutation p.R2135Q 0.06 tolerated(0.83) benign(0.26) TCGA-V9-A7HT-01 3 72881545 72881545 C T SHQ1 Missense_Mutation p.A192T 0.15 tolerated(0.09) benign(0.17) TCGA-V9-A7HT-01 3 9788110 9788110 G C BRPF1 Missense_Mutation p.V1151L 0.39 deleterious(0) possibly_damaging(0.648) TCGA-V9-A7HT-01 4 20258328 20258328 G C SLIT2 Silent p.T71T 0.12 TCGA-V9-A7HT-01 5 121780389 121780389 G T SNCAIP Silent p.L518L 0.13 TCGA-V9-A7HT-01 5 137676979 137676979 T A FAM53C 5'UTR 0.20 TCGA-V9-A7HT-01 5 137676980 137676980 C T FAM53C 5'UTR 0.19 TCGA-V9-A7HT-01 5 140752308 140752308 G T PCDHGB3 Missense_Mutation p.D783Y 0.32 deleterious(0.01) possibly_damaging(0.476) TCGA-V9-A7HT-01 5 32790311 32790311 G A NPR3 3'UTR 0.18 TCGA-V9-A7HT-01 6 144811284 144811284 C A UTRN Silent p.T1404T 0.24 TCGA-V9-A7HT-01 6 151674035 151674035 G T AKAP12 Missense_Mutation p.E1503D 0.32 tolerated(0.86) benign(0.002) TCGA-V9-A7HT-01 6 160183118 160183118 A C ACAT2 5'UTR 0.09 TCGA-V9-A7HT-01 6 168347513 168347513 A G MLLT4 Missense_Mutation p.K1155R 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.759) TCGA-V9-A7HT-01 6 31939335 31939335 A G DXO Missense_Mutation p.F40L 0.17 tolerated(0.06) benign(0.179) TCGA-V9-A7HT-01 6 43498437 43498437 C G XPO5 Missense_Mutation p.R889T 0.37 deleterious(0) possibly_damaging(0.628) TCGA-V9-A7HT-01 6 55142245 55142245 G A HCRTR2 Missense_Mutation p.G277E 0.20 tolerated(0.05) benign(0.064) TCGA-V9-A7HT-01 6 62604622 62604622 G A KHDRBS2 Missense_Mutation p.P243L 0.15 tolerated(0.3) benign(0.276) TCGA-V9-A7HT-01 7 104783659 104783659 T G SRPK2 Missense_Mutation p.K311T 0.28 tolerated(0.25) possibly_damaging(0.6) TCGA-V9-A7HT-01 7 123152366 123152366 G T IQUB Missense_Mutation p.A10D 0.22 tolerated_low_confidence(0.19) benign(0.079) TCGA-V9-A7HT-01 7 128452883 128452883 A T CCDC136 Missense_Mutation p.Q888L 0.38 tolerated(0.11) possibly_damaging(0.876) TCGA-V9-A7HT-01 7 129756471 129756471 A G KLHDC10 Missense_Mutation p.D147G 0.37 tolerated(0.15) benign(0.004) TCGA-V9-A7HT-01 7 150649865 150649865 T C KCNH2 Missense_Mutation p.H402R 0.27 deleterious(0.01) benign(0.162) TCGA-V9-A7HT-01 7 151878422 151878422 T C KMT2C Missense_Mutation p.S2175G 0.31 benign(0.066) TCGA-V9-A7HT-01 7 76826164 76826164 C G FGL2 Missense_Mutation p.W251S 0.26 deleterious(0) probably_damaging(1) TCGA-V9-A7HT-01 8 103266727 103266727 A T UBR5 Missense_Mutation p.S2735T 0.35 deleterious(0.01) possibly_damaging(0.891) TCGA-V9-A7HT-01 8 12882615 12882615 T C KIAA1456 3'UTR 0.38 TCGA-V9-A7HT-01 8 24813060 24813060 C A CTD-2168K21.2 5'Flank 0.16 TCGA-V9-A7HT-01 8 70515847 70515847 C T SULF1 Silent p.N401N 0.14 TCGA-V9-A7HT-01 9 15474059 15474060 - C PSIP1 Frame_Shift_Ins p.V269Gfs*8 0.14 TCGA-V9-A7HT-01 9 8341221 8341221 A C PTPRD Missense_Mutation p.N1665K 0.27 deleterious(0.02) probably_damaging(0.969) TCGA-V9-A7HT-01 9 99581195 99581195 T C ZNF782 Silent p.E370E 0.24 TCGA-V9-A7HT-01 X 106236528 106236528 A C MORC4 Missense_Mutation p.N80K 0.38 tolerated(0.15) benign(0.007) TCGA-V9-A7HT-01 X 38665490 38665490 T C MID1IP1 3'UTR 0.43 TCGA-V9-A7HT-01 X 69478929 69478931 GGT - P2RY4 In_Frame_Del p.T182del 0.55 TCGA-WN-A9G9-01 10 47087489 47087489 C T NPY4R Missense_Mutation p.R236C 0.11 deleterious(0.04) probably_damaging(0.996) TCGA-WN-A9G9-01 10 50708590 50708590 T C ERCC6 Missense_Mutation p.N560S 0.13 tolerated(0.15) benign(0.217) TCGA-WN-A9G9-01 11 108143336 108143336 T A ATM Splice_Site p.X1051_splice 0.10 TCGA-WN-A9G9-01 11 18257447 18257447 G T SAA4 Missense_Mutation p.F9L 0.04 tolerated(0.62) benign(0.002) TCGA-WN-A9G9-01 11 76371485 76371485 G A LRRC32 Silent p.A384A 0.05 TCGA-WN-A9G9-01 12 102147264 102147264 G T GNPTAB Missense_Mutation p.T1163K 0.10 deleterious(0) probably_damaging(0.999) TCGA-WN-A9G9-01 12 104458319 104458319 G T HCFC2 5'UTR 0.12 TCGA-WN-A9G9-01 12 54675583 54675583 T C HNRNPA1 Missense_Mutation p.M46T 0.12 deleterious(0.05) possibly_damaging(0.833) TCGA-WN-A9G9-01 15 79059252 79059252 G C ADAMTS7 Missense_Mutation p.L1001V 0.11 tolerated(0.24) benign(0.005) TCGA-WN-A9G9-01 15 85652313 85652313 A C PDE8A Silent p.R356R 0.10 TCGA-WN-A9G9-01 16 30419477 30419477 G A ZNF771 Missense_Mutation p.E35K 0.07 tolerated(0.14) benign(0.264) TCGA-WN-A9G9-01 16 3351919 3351919 G A TIGD7 5'UTR 0.10 TCGA-WN-A9G9-01 16 75600283 75600283 C T GABARAPL2 5'UTR 0.10 TCGA-WN-A9G9-01 17 26900855 26900867 GGTAAGCGCCCAG - ALDOC Frame_Shift_Del p.W296Sfs*35 0.09 TCGA-WN-A9G9-01 17 37595435 37595435 C A MED1 Missense_Mutation p.E137D 0.10 tolerated(0.06) probably_damaging(0.955) TCGA-WN-A9G9-01 17 48940877 48940877 T C TOB1 Missense_Mutation p.M168V 0.14 tolerated(0.36) benign(0.001) TCGA-WN-A9G9-01 17 63049759 63049759 G - GNA13 Frame_Shift_Del p.S124Cfs*26 0.11 TCGA-WN-A9G9-01 17 65163789 65163789 A T HELZ Silent p.S518S 0.13 TCGA-WN-A9G9-01 17 7225239 7225239 T A NEURL4 Missense_Mutation p.Y939F 0.13 tolerated(0.47) benign(0.43) TCGA-WN-A9G9-01 17 72915897 72915897 C T USH1G Missense_Mutation p.R345Q 0.11 tolerated(0.1) benign(0.424) TCGA-WN-A9G9-01 19 10112281 10112281 A G COL5A3 Silent p.D343D 0.08 TCGA-WN-A9G9-01 19 35491387 35491387 T A GRAMD1A Missense_Mutation p.F2Y 0.09 deleterious_low_confidence(0.05) unknown(0) TCGA-WN-A9G9-01 19 38997149 38997149 G A RYR1 Silent p.T2885T 0.08 TCGA-WN-A9G9-01 19 39926561 39926561 T C RPS16 5'UTR 0.13 TCGA-WN-A9G9-01 19 41192843 41192843 G T NUMBL Missense_Mutation p.P28T 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-WN-A9G9-01 19 44680079 44680102 AAATCTTATAGACCCAATGATTAT - ZNF226 In_Frame_Del p.K222_Y229del 0.11 TCGA-WN-A9G9-01 1 110009739 110009739 T C SYPL2 Missense_Mutation p.I38T 0.10 deleterious(0) benign(0.261) TCGA-WN-A9G9-01 1 158615036 158615047 TCATCTCTCTCT - SPTA1 In_Frame_Del p.E1376_D1379del 0.18 TCGA-WN-A9G9-01 1 158815387 158815387 C - MNDA Frame_Shift_Del p.Q195Rfs*18 0.09 TCGA-WN-A9G9-01 1 234541785 234541786 - AA TARBP1 Frame_Shift_Ins p.S1285Lfs*8 0.12 TCGA-WN-A9G9-01 1 235944201 235944201 A G LYST Silent p.F1726F 0.09 TCGA-WN-A9G9-01 1 236384263 236384263 A T ERO1LB Silent p.T404T 0.07 TCGA-WN-A9G9-01 1 247063492 247063492 A G AHCTF1 Missense_Mutation p.V445A 0.20 deleterious(0) probably_damaging(0.917) TCGA-WN-A9G9-01 1 248112664 248112664 C T OR2L8 Nonsense_Mutation p.R169* 0.06 TCGA-WN-A9G9-01 1 43850543 43850543 A G MED8 Intron 0.13 TCGA-WN-A9G9-01 1 55603533 55603533 G T USP24 Silent p.A991A 0.11 TCGA-WN-A9G9-01 1 8073471 8073472 - A ERRFI1 Frame_Shift_Ins p.L397Tfs*3 0.09 TCGA-WN-A9G9-01 20 45315710 45315710 C T TP53RK Silent p.Q148Q 0.10 TCGA-WN-A9G9-01 20 53205106 53205106 G A DOK5 Missense_Mutation p.D87N 0.10 tolerated(0.06) possibly_damaging(0.473) TCGA-WN-A9G9-01 21 45717672 45717672 C A AIRE 3'UTR 0.11 TCGA-WN-A9G9-01 22 38882032 38882032 G T DDX17 Missense_Mutation p.P702T 0.11 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-WN-A9G9-01 2 202005084 202005084 A T CFLAR Missense_Mutation p.Q176H 0.10 tolerated(0.11) benign(0.3) TCGA-WN-A9G9-01 2 210894559 210894559 T G KANSL1L Missense_Mutation p.N747H 0.14 deleterious(0.05) benign(0.059) TCGA-WN-A9G9-01 2 55825735 55825735 T C SMEK2 Silent p.A246A 0.10 TCGA-WN-A9G9-01 2 61483604 61483604 C G USP34 Missense_Mutation p.D2046H 0.07 deleterious(0) probably_damaging(0.999) TCGA-WN-A9G9-01 2 65299733 65299733 C A CEP68 Silent p.S501S 0.08 TCGA-WN-A9G9-01 2 85768828 85768828 A G MAT2A Missense_Mutation p.H122R 0.16 deleterious(0.01) possibly_damaging(0.636) TCGA-WN-A9G9-01 2 86385801 86385801 T C IMMT Missense_Mutation p.H359R 0.13 tolerated(0.5) benign(0.137) TCGA-WN-A9G9-01 2 96559304 96559304 T C ANKRD36C Missense_Mutation p.K332R 0.15 deleterious(0.02) possibly_damaging(0.602) TCGA-WN-A9G9-01 2 99156012 99156012 G T INPP4A Missense_Mutation p.R231L 0.14 deleterious(0) probably_damaging(0.997) TCGA-WN-A9G9-01 3 10183797 10183797 T A VHL Missense_Mutation p.L89H 0.16 deleterious(0) probably_damaging(0.993) TCGA-WN-A9G9-01 3 125282684 125282684 G C OSBPL11 Missense_Mutation p.T291R 0.16 tolerated(0.2) possibly_damaging(0.586) TCGA-WN-A9G9-01 3 182990680 182990680 A G MCF2L2 Intron 0.10 TCGA-WN-A9G9-01 3 32859580 32859580 C T TRIM71 Missense_Mutation p.S3L 0.17 deleterious_low_confidence(0) unknown(0) TCGA-WN-A9G9-01 3 32859581 32859581 G T TRIM71 Silent p.S3S 0.20 TCGA-WN-A9G9-01 4 104065755 104065755 T - CENPE Frame_Shift_Del p.E1627Nfs*7 0.12 TCGA-WN-A9G9-01 4 108969717 108969717 T A LEF1 3'UTR 0.07 TCGA-WN-A9G9-01 4 114378666 114378666 G A CAMK2D Missense_Mutation p.H420Y 0.10 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-WN-A9G9-01 4 167810344 167810344 A - SPOCK3 Frame_Shift_Del p.C179Vfs*56 0.13 TCGA-WN-A9G9-01 5 134153202 134153202 C T DDX46 Missense_Mutation p.A876V 0.04 deleterious(0.03) possibly_damaging(0.566) TCGA-WN-A9G9-01 5 140554081 140554081 C T PCDHB7 Silent p.N555N 0.08 TCGA-WN-A9G9-01 5 38923328 38923328 G A OSMR Silent p.E614E 0.12 TCGA-WN-A9G9-01 5 58571262 58571272 AACTATTCTGA - PDE4D Intron 0.10 TCGA-WN-A9G9-01 5 79745509 79745509 T C ZFYVE16 Missense_Mutation p.L1068P 0.16 deleterious(0) probably_damaging(0.999) TCGA-WN-A9G9-01 6 30039171 30039172 - T RNF39 Frame_Shift_Ins p.R327Kfs*33 0.10 TCGA-WN-A9G9-01 6 30707937 30707937 G T FLOT1 Missense_Mutation p.Q241K 0.14 deleterious(0) possibly_damaging(0.902) TCGA-WN-A9G9-01 6 30919864 30919864 C G DPCR1 Missense_Mutation p.P1208R 0.15 tolerated(0.2) probably_damaging(0.976) TCGA-WN-A9G9-01 6 32138672 32138672 G A AGPAT1 Intron 0.21 TCGA-WN-A9G9-01 6 89793765 89793765 T G PNRC1 Missense_Mutation p.N278K 0.11 deleterious(0.02) probably_damaging(0.988) TCGA-WN-A9G9-01 7 100414914 100414914 C A EPHB4 Silent p.G496G 0.17 TCGA-WN-A9G9-01 7 100684959 100684959 C T MUC17 Missense_Mutation p.T3421I 0.11 benign(0.441) TCGA-WN-A9G9-01 7 138874312 138874312 C G TTC26 3'UTR 0.12 TCGA-WN-A9G9-01 7 140227209 140227209 G A DENND2A Missense_Mutation p.A805V 0.12 deleterious(0) possibly_damaging(0.794) TCGA-WN-A9G9-01 7 140507773 140507774 - T BRAF Frame_Shift_Ins p.T233Nfs*17 0.08 TCGA-WN-A9G9-01 7 37780739 37780739 C T GPR141 Silent p.Y248Y 0.13 TCGA-WN-A9G9-01 7 39612136 39612136 G C YAE1D1 Missense_Mutation p.C171S 0.11 tolerated(0.16) benign(0.025) TCGA-WN-A9G9-01 7 45788232 45788232 T A SEPT7P2 RNA 0.07 TCGA-WN-A9G9-01 7 48317734 48317734 C T ABCA13 Nonsense_Mutation p.Q2315* 0.10 TCGA-WN-A9G9-01 7 6193668 6193668 C G USP42 Missense_Mutation p.A828G 0.10 tolerated(0.38) benign(0) TCGA-WN-A9G9-01 8 133634883 133634883 C T LRRC6 Silent p.G296G 0.12 TCGA-WN-A9G9-01 8 22478857 22478857 A G BIN3 3'UTR 0.24 TCGA-WN-A9G9-01 8 27315863 27315863 A T PTK2B Missense_Mutation p.K956M 0.11 deleterious(0) probably_damaging(1) TCGA-WN-A9G9-01 8 2910077 2910077 C A CSMD1 Nonsense_Mutation p.E2523* 0.14 TCGA-WN-A9G9-01 9 108397413 108397413 C A FKTN Nonsense_Mutation p.Y418* 0.09 TCGA-WN-A9G9-01 9 127620057 127620057 A T WDR38 3'UTR 0.15 TCGA-WN-A9G9-01 9 132569640 132569640 C T TOR1B Silent p.L213L 0.07 TCGA-WN-A9G9-01 9 91616360 91616361 CT - S1PR3 Frame_Shift_Del p.C84Rfs*100 0.09 TCGA-WN-A9G9-01 X 114953568 114953568 C T RP1-241P17.4 5'UTR 0.22 TCGA-WN-A9G9-01 X 47044733 47044733 G C RBM10 Missense_Mutation p.M711I 0.25 tolerated(0.35) benign(0.001) TCGA-WN-A9G9-01 X 47428231 47428231 C T ARAF Silent p.A397A 0.04 TCGA-WN-AB4C-01 10 15688924 15688924 G A ITGA8 Silent p.I376I 0.23 TCGA-WN-AB4C-01 10 35929628 35929628 C A FZD8 Nonsense_Mutation p.E244* 0.29 TCGA-WN-AB4C-01 10 76789888 76789888 G A KAT6B Missense_Mutation p.C1769Y 0.20 probably_damaging(0.996) TCGA-WN-AB4C-01 10 89264667 89264667 C T MINPP1 5'UTR 0.28 TCGA-WN-AB4C-01 10 99656744 99656744 T G CRTAC1 Missense_Mutation p.I380L 0.29 tolerated(0.8) benign(0.001) TCGA-WN-AB4C-01 11 1036683 1036683 G A MUC6 5'UTR 0.33 TCGA-WN-AB4C-01 11 121000644 121000644 T A TECTA Missense_Mutation p.C889S 0.30 deleterious(0) probably_damaging(0.979) TCGA-WN-AB4C-01 11 46832664 46832664 A G CKAP5 Missense_Mutation p.S175P 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-WN-AB4C-01 11 5475536 5475536 A G OR51I2 Missense_Mutation p.H273R 0.29 tolerated(0.06) possibly_damaging(0.896) TCGA-WN-AB4C-01 11 60702036 60702036 G A TMEM132A Missense_Mutation p.A547T 0.25 tolerated(0.15) benign(0.275) TCGA-WN-AB4C-01 11 64085626 64085626 G T PRDX5 5'UTR 0.31 TCGA-WN-AB4C-01 11 6588531 6588531 T A DNHD1 Missense_Mutation p.V3931E 0.26 benign(0.179) TCGA-WN-AB4C-01 11 67168588 67168588 A G PPP1CA Silent p.F57F 0.26 TCGA-WN-AB4C-01 11 73022203 73022203 T A ARHGEF17 Silent p.P840P 0.38 TCGA-WN-AB4C-01 12 104681125 104681125 G T TXNRD1 Intron 0.29 TCGA-WN-AB4C-01 12 122389412 122389412 C T WDR66 Silent p.H432H 0.24 TCGA-WN-AB4C-01 12 123253800 123253800 T C DENR 3'UTR 0.42 TCGA-WN-AB4C-01 12 5155878 5155879 AT - KCNA5 3'UTR 0.17 TCGA-WN-AB4C-01 12 57578676 57578676 C G LRP1 Missense_Mutation p.L2081V 0.25 probably_damaging(0.996) TCGA-WN-AB4C-01 13 60384950 60384950 C T DIAPH3 Silent p.K1045K 0.23 TCGA-WN-AB4C-01 14 23792661 23792661 C A PABPN1 Missense_Mutation p.L204M 0.21 deleterious(0) probably_damaging(0.999) TCGA-WN-AB4C-01 14 23847943 23847943 C A CMTM5 Intron 0.24 TCGA-WN-AB4C-01 14 93154643 93154643 C A RIN3 3'UTR 0.29 TCGA-WN-AB4C-01 16 18532276 18532276 A G NOMO2 Missense_Mutation p.V695A 0.11 tolerated(0.06) possibly_damaging(0.724) TCGA-WN-AB4C-01 16 23391419 23391421 GGA - SCNN1B In_Frame_Del p.G491del 0.28 TCGA-WN-AB4C-01 16 30021517 30021517 C T DOC2A Missense_Mutation p.M9I 0.11 tolerated(0.12) benign(0.004) TCGA-WN-AB4C-01 16 31500225 31500225 A T SLC5A2 Silent p.V435V 0.26 TCGA-WN-AB4C-01 16 50373920 50373920 C T BRD7 Silent p.K223K 0.27 TCGA-WN-AB4C-01 16 56623945 56623945 C A MT3 Intron 0.25 TCGA-WN-AB4C-01 16 56660903 56660903 C T MT1E 3'UTR 0.33 TCGA-WN-AB4C-01 16 71950997 71950997 C A IST1 Missense_Mutation p.A119D 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-WN-AB4C-01 16 81094893 81094893 A T C16orf46 Missense_Mutation p.V354D 0.27 tolerated(0.08) benign(0.367) TCGA-WN-AB4C-01 17 17117172 17117172 T G FLCN Splice_Site p.X513_splice 0.32 TCGA-WN-AB4C-01 17 37566430 37566430 A T MED1 Missense_Mutation p.S682T 0.56 tolerated_low_confidence(0.36) benign(0.032) TCGA-WN-AB4C-01 17 38858105 38858105 C A KRT24 Silent p.L232L 0.17 TCGA-WN-AB4C-01 17 40831918 40831918 C G CCR10 Missense_Mutation p.V248L 0.52 deleterious(0) possibly_damaging(0.877) TCGA-WN-AB4C-01 17 4636405 4636405 G A MED11 Missense_Mutation p.A93T 0.45 deleterious(0.05) probably_damaging(0.927) TCGA-WN-AB4C-01 17 5461748 5461748 G A NLRP1 Silent p.F756F 0.36 TCGA-WN-AB4C-01 17 74712745 74712745 T C JMJD6 3'UTR 0.16 TCGA-WN-AB4C-01 17 76972059 76972059 C A LGALS3BP Missense_Mutation p.A78S 0.20 tolerated(0.22) benign(0.178) TCGA-WN-AB4C-01 17 79202646 79202646 A T ENTHD2 3'UTR 0.25 TCGA-WN-AB4C-01 18 32409091 32409091 C A DTNA Intron 0.22 TCGA-WN-AB4C-01 19 15230035 15230035 G C ILVBL Silent p.L331L 0.26 TCGA-WN-AB4C-01 19 17338767 17338767 A G OCEL1 Missense_Mutation p.R191G 0.23 deleterious(0.02) benign(0.396) TCGA-WN-AB4C-01 19 35175271 35175271 C T ZNF302 Missense_Mutation p.S110L 0.23 tolerated(0.08) benign(0.193) TCGA-WN-AB4C-01 19 49136816 49136816 C T DBP Missense_Mutation p.S216N 0.28 deleterious(0) benign(0.341) TCGA-WN-AB4C-01 19 52496921 52496921 C G ZNF615 Missense_Mutation p.D481H 0.30 tolerated(0.37) probably_damaging(0.912) TCGA-WN-AB4C-01 1 146658726 146658726 A G FMO5 Missense_Mutation p.L452P 0.27 deleterious(0) probably_damaging(0.988) TCGA-WN-AB4C-01 1 167666530 167666530 A T RCSD1 Silent p.A223A 0.25 TCGA-WN-AB4C-01 1 169096621 169096621 A G ATP1B1 Missense_Mutation p.N181S 0.27 deleterious(0) probably_damaging(0.987) TCGA-WN-AB4C-01 1 176811663 176811663 A T PAPPA2 3'UTR 0.20 TCGA-WN-AB4C-01 1 176811667 176811667 T G PAPPA2 3'UTR 0.19 TCGA-WN-AB4C-01 1 202464697 202464697 G C PPP1R12B Splice_Site p.X779_splice 0.25 TCGA-WN-AB4C-01 1 207131928 207131928 A T FCAMR Missense_Mutation p.M556K 0.23 deleterious(0) benign(0.115) TCGA-WN-AB4C-01 1 227182594 227182594 G T CDC42BPA Nonsense_Mutation p.S1653* 0.23 TCGA-WN-AB4C-01 1 228482711 228482711 C A OBSCN Missense_Mutation p.Q4305K 0.24 possibly_damaging(0.497) TCGA-WN-AB4C-01 1 244572759 244572759 G T ADSS 3'UTR 0.32 TCGA-WN-AB4C-01 1 27631607 27631607 C T WDTC1 Nonsense_Mutation p.Q586* 0.22 TCGA-WN-AB4C-01 1 28792196 28792196 G A PHACTR4 Missense_Mutation p.G101D 0.26 tolerated(1) benign(0.045) TCGA-WN-AB4C-01 1 34008360 34008360 C A CSMD2 Silent p.S2935S 0.34 TCGA-WN-AB4C-01 1 36641997 36641997 G A MAP7D1 Missense_Mutation p.D350N 0.22 benign(0.067) TCGA-WN-AB4C-01 1 51929372 51929372 A T EPS15 Silent p.S158S 0.19 TCGA-WN-AB4C-01 1 93621899 93621899 A G TMED5 Silent p.I143I 0.25 TCGA-WN-AB4C-01 20 308966 308966 G C SOX12 3'UTR 0.25 TCGA-WN-AB4C-01 20 32857137 32857137 A G ASIP 3'Flank 0.50 TCGA-WN-AB4C-01 20 5167345 5167345 A C CDS2 Missense_Mutation p.M281L 0.32 tolerated(1) benign(0.001) TCGA-WN-AB4C-01 20 5528358 5528358 C A GPCPD1 Missense_Mutation p.E656D 0.44 tolerated(0.62) benign(0) TCGA-WN-AB4C-01 20 62839660 62839660 G A MYT1 Missense_Mutation p.D371N 0.42 probably_damaging(0.947) TCGA-WN-AB4C-01 21 26979768 26979768 C T MRPL39 Missense_Mutation p.G7D 0.16 deleterious_low_confidence(0.01) benign(0.387) TCGA-WN-AB4C-01 21 33297055 33297055 G T HUNK Silent p.R179R 0.29 TCGA-WN-AB4C-01 22 18609451 18609451 T C TUBA8 Missense_Mutation p.S236P 0.34 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-WN-AB4C-01 22 21340180 21340180 G T LZTR1 Missense_Mutation p.W105L 0.33 deleterious(0) probably_damaging(1) TCGA-WN-AB4C-01 22 37098524 37098524 C G CACNG2 Missense_Mutation p.W33S 0.33 deleterious(0) probably_damaging(0.998) TCGA-WN-AB4C-01 22 45689097 45689097 C T UPK3A Missense_Mutation p.R203W 0.23 deleterious(0.04) benign(0.109) TCGA-WN-AB4C-01 2 169574379 169574379 T G CERS6 Intron 0.34 TCGA-WN-AB4C-01 2 179482094 179482094 C G TTN Missense_Mutation p.W15906C 0.21 TCGA-WN-AB4C-01 2 218669133 218669133 C - TNS1 3'UTR 0.19 TCGA-WN-AB4C-01 2 234675730 234675741 CTCTTTGGGATC - UGT1A10 In_Frame_Del p.F302_S306delinsL 0.29 TCGA-WN-AB4C-01 2 32740159 32740160 - TC BIRC6 Frame_Shift_Ins p.L3560Cfs*21 0.16 TCGA-WN-AB4C-01 2 69732772 69732772 T A AAK1 Missense_Mutation p.E733V 0.33 deleterious(0) probably_damaging(0.929) TCGA-WN-AB4C-01 2 70529069 70529069 G C FAM136A Missense_Mutation p.I25M 0.25 tolerated(0.05) possibly_damaging(0.734) TCGA-WN-AB4C-01 2 74657138 74657138 A G RTKN Missense_Mutation p.L191P 0.25 deleterious(0) probably_damaging(0.999) TCGA-WN-AB4C-01 3 132165336 132165336 C T DNAJC13 Missense_Mutation p.S29L 0.28 deleterious(0.02) benign(0.202) TCGA-WN-AB4C-01 3 137893644 137893644 G T DBR1 5'UTR 0.23 TCGA-WN-AB4C-01 3 184020504 184020504 C A PSMD2 Missense_Mutation p.H301N 0.25 deleterious(0.01) benign(0.039) TCGA-WN-AB4C-01 3 186459563 186459563 G T KNG1 Missense_Mutation p.G460C 0.25 deleterious(0.01) probably_damaging(0.915) TCGA-WN-AB4C-01 3 47041451 47041451 C T NBEAL2 Silent p.L1288L 0.22 TCGA-WN-AB4C-01 3 52938985 52938985 G T SFMBT1 3'UTR 0.29 TCGA-WN-AB4C-01 3 57419487 57419487 G A DNAH12 Missense_Mutation p.T1552I 0.21 deleterious(0.03) possibly_damaging(0.803) TCGA-WN-AB4C-01 4 141868823 141868823 C T RNF150 Missense_Mutation p.R292Q 0.19 deleterious(0) possibly_damaging(0.892) TCGA-WN-AB4C-01 4 15638133 15638133 A G FBXL5 Silent p.P250P 0.24 TCGA-WN-AB4C-01 4 187509944 187509944 A T FAT1 Nonsense_Mutation p.Y4523* 0.19 TCGA-WN-AB4C-01 4 25667838 25667838 G C SLC34A2 Missense_Mutation p.L156F 0.39 deleterious(0.01) possibly_damaging(0.786) TCGA-WN-AB4C-01 5 122435363 122435363 G A PRDM6 Missense_Mutation p.A203T 0.27 deleterious(0) possibly_damaging(0.757) TCGA-WN-AB4C-01 5 126705644 126705644 C G MEGF10 Missense_Mutation p.P121R 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-WN-AB4C-01 5 137760025 137760025 G C KDM3B Missense_Mutation p.G1412R 0.25 deleterious(0) probably_damaging(0.999) TCGA-WN-AB4C-01 5 147211227 147211228 - G SPINK1 5'UTR 0.24 TCGA-WN-AB4C-01 5 153435075 153435076 TG - MFAP3 3'UTR 0.20 TCGA-WN-AB4C-01 5 156590429 156590429 C T FAM71B Missense_Mutation p.A283T 0.27 tolerated(0.2) benign(0.031) TCGA-WN-AB4C-01 5 22078621 22078621 G A CDH12 Silent p.G55G 0.33 TCGA-WN-AB4C-01 5 33936554 33936554 A C RXFP3 5'UTR 0.22 TCGA-WN-AB4C-01 5 72192967 72192968 - AG TNPO1 Frame_Shift_Ins p.N778Rfs*5 0.24 TCGA-WN-AB4C-01 5 77536710 77536710 C A AP3B1 Missense_Mutation p.K85N 0.24 deleterious(0) probably_damaging(0.998) TCGA-WN-AB4C-01 6 130415502 130415502 G A L3MBTL3 Missense_Mutation p.G576S 0.24 tolerated(0.14) benign(0.022) TCGA-WN-AB4C-01 6 161470102 161470103 AG - MAP3K4 Frame_Shift_Del p.E267Afs*11 0.24 TCGA-WN-AB4C-01 6 165746433 165746433 C G PDE10A 3'UTR 0.38 TCGA-WN-AB4C-01 6 24405466 24405466 T C MRS2 Silent p.T87T 0.27 TCGA-WN-AB4C-01 6 31627805 31627805 A G C6orf47 5'UTR 0.20 TCGA-WN-AB4C-01 6 33385705 33385705 C T CUTA Intron 0.30 TCGA-WN-AB4C-01 6 4131018 4131018 G A ECI2 Missense_Mutation p.L99F 0.28 deleterious(0.04) possibly_damaging(0.598) TCGA-WN-AB4C-01 6 46626712 46626712 T A SLC25A27 Silent p.G104G 0.24 TCGA-WN-AB4C-01 6 90571848 90571848 G A CASP8AP2 RNA 0.25 TCGA-WN-AB4C-01 7 121960313 121960313 C T CADPS2 Missense_Mutation p.R1266H 0.20 deleterious(0) probably_damaging(0.999) TCGA-WN-AB4C-01 7 142609899 142609899 G T TRPV5 Missense_Mutation p.Q513K 0.26 deleterious(0) probably_damaging(1) TCGA-WN-AB4C-01 7 44801088 44801088 G A ZMIZ2 Silent p.V427V 0.28 TCGA-WN-AB4C-01 7 47832364 47832364 A T PKD1L1 Nonsense_Mutation p.L2796* 0.28 TCGA-WN-AB4C-01 7 84727167 84727167 T C SEMA3D Missense_Mutation p.H89R 0.23 tolerated(0.35) probably_damaging(1) TCGA-WN-AB4C-01 7 95064242 95064247 CCACAG - PON2 In_Frame_Del p.A6_V7del 0.20 TCGA-WN-AB4C-01 8 124705533 124705533 C T ANXA13 Silent p.G223G 0.28 TCGA-WN-AB4C-01 8 17419548 17419548 C A SLC7A2 Missense_Mutation p.L574I 0.35 tolerated(0.14) benign(0.013) TCGA-WN-AB4C-01 8 42275274 42275274 C A SLC20A2 3'UTR 0.34 TCGA-WN-AB4C-01 9 114500784 114500784 G A C9orf84 Missense_Mutation p.P334L 0.23 tolerated(0.22) benign(0.013) TCGA-WN-AB4C-01 9 115179215 115179215 C T HSDL2 Nonsense_Mutation p.Q164* 0.35 TCGA-WN-AB4C-01 9 126144822 126144822 C G DENND1A Missense_Mutation p.S640T 0.22 deleterious(0.04) possibly_damaging(0.7) TCGA-WN-AB4C-01 9 128104522 128104522 A - GAPVD1 Frame_Shift_Del p.K1025Nfs*109 0.27 TCGA-WN-AB4C-01 9 135765289 135765289 C T C9orf9 Intron 0.28 TCGA-WN-AB4C-01 9 139409835 139409835 T A NOTCH1 Missense_Mutation p.N641Y 0.21 deleterious(0) possibly_damaging(0.897) TCGA-WN-AB4C-01 9 72961520 72961520 G A SMC5 Splice_Site p.X842_splice 0.27 TCGA-WN-AB4C-01 9 72961521 72961521 C A SMC5 Missense_Mutation p.Q842K 0.27 tolerated(0.56) benign(0.056) TCGA-WN-AB4C-01 X 131212370 131212370 C T FRMD7 Missense_Mutation p.G559S 0.17 tolerated(0.12) benign(0.053) TCGA-WN-AB4C-01 X 139014197 139014197 A C ATP11C Missense_Mutation p.F2C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.644) TCGA-WN-AB4C-01 X 23018261 23018261 C T DDX53 Silent p.G29G 0.33 TCGA-WN-AB4C-01 X 3242168 3242168 T C MXRA5 Missense_Mutation p.I520V 0.18 tolerated(1) benign(0.002) TCGA-WN-AB4C-01 X 78216602 78216602 G A P2RY10 Silent p.L195L 0.33 TCGA-Y8-A894-01 10 104136491 104136491 A G GBF1 Missense_Mutation p.T1407A 0.53 deleterious(0) probably_damaging(0.912) TCGA-Y8-A894-01 10 14909284 14909284 T - HSPA14 Frame_Shift_Del p.L400* 0.30 TCGA-Y8-A894-01 10 61868591 61868591 A T ANK3 Nonsense_Mutation p.L1057* 0.46 TCGA-Y8-A894-01 10 75877813 75877813 C G VCL Missense_Mutation p.N1097K 0.48 deleterious(0) probably_damaging(0.994) TCGA-Y8-A894-01 10 99120318 99120318 G A RRP12 Missense_Mutation p.P1209S 0.52 tolerated(0.58) benign(0.002) TCGA-Y8-A894-01 11 1256589 1256589 C - MUC5B Frame_Shift_Del p.C944Vfs*21 0.31 TCGA-Y8-A894-01 11 58294737 58294737 T C LPXN 3'UTR 0.62 TCGA-Y8-A894-01 11 63672367 63672367 A C MARK2 Missense_Mutation p.T596P 0.51 deleterious(0.01) possibly_damaging(0.881) TCGA-Y8-A894-01 12 108051550 108051560 GGCTTTACACA - BTBD11 3'UTR 0.39 TCGA-Y8-A894-01 12 111345141 111345141 A T CCDC63 Missense_Mutation p.Q518L 0.52 tolerated(0.64) benign(0.153) TCGA-Y8-A894-01 12 122406042 122406042 A G WDR66 Missense_Mutation p.D913G 0.60 deleterious(0) benign(0.32) TCGA-Y8-A894-01 12 46327006 46327006 A G SCAF11 Silent p.F214F 0.34 TCGA-Y8-A894-01 12 52401044 52401044 C T GRASP Nonsense_Mutation p.R81* 0.49 TCGA-Y8-A894-01 12 99478796 99478796 G A ANKS1B Silent p.S844S 0.41 TCGA-Y8-A894-01 13 26621071 26621071 C A SHISA2 Silent p.G156G 0.49 TCGA-Y8-A894-01 13 45149121 45149121 A C TSC22D1 Missense_Mutation p.L364V 0.57 tolerated(0.2) probably_damaging(0.99) TCGA-Y8-A894-01 13 48807488 48807488 G T ITM2B 5'UTR 0.56 TCGA-Y8-A894-01 14 21215971 21215972 - CT EDDM3A Frame_Shift_Ins p.R78Pfs*53 0.32 TCGA-Y8-A894-01 14 21215972 21215973 - CA EDDM3A Frame_Shift_Ins p.A79Mfs*52 0.32 TCGA-Y8-A894-01 14 63860645 63860645 T A PPP2R5E Missense_Mutation p.I248F 0.47 deleterious(0) probably_damaging(0.998) TCGA-Y8-A894-01 14 95590600 95590600 G C DICER1 Missense_Mutation p.P437A 0.54 tolerated(0.07) probably_damaging(0.96) TCGA-Y8-A894-01 15 101589985 101589985 C - LRRK1 Frame_Shift_Del p.A1147Pfs*2 0.43 TCGA-Y8-A894-01 15 101833253 101833253 C T SNRPA1 Silent p.L69L 0.25 TCGA-Y8-A894-01 15 23335612 23335612 T CAAACAAAC HERC2P2 RNA 0.17 TCGA-Y8-A894-01 15 40259799 40259799 G A EIF2AK4 Silent p.K424K 0.49 TCGA-Y8-A894-01 15 52615613 52615613 G C MYO5A Missense_Mutation p.S1555C 0.43 deleterious(0) probably_damaging(0.926) TCGA-Y8-A894-01 15 57730578 57730578 T C CGNL1 Silent p.N127N 0.47 TCGA-Y8-A894-01 15 71193333 71193333 T C LRRC49 Missense_Mutation p.I94T 0.48 tolerated(0.63) benign(0.002) TCGA-Y8-A894-01 15 72874471 72874471 G C ARIH1 Missense_Mutation p.R511P 0.47 deleterious(0) probably_damaging(0.996) TCGA-Y8-A894-01 15 79165509 79165509 G A MORF4L1 Intron 0.49 TCGA-Y8-A894-01 15 91298123 91298123 A G BLM Missense_Mutation p.M348V 0.47 tolerated(0.51) benign(0.005) TCGA-Y8-A894-01 16 343699 343699 G A AXIN1 Missense_Mutation p.P659S 0.31 tolerated(0.48) benign(0.001) TCGA-Y8-A894-01 16 70818677 70818677 A T VAC14 Splice_Site p.X162_splice 0.41 TCGA-Y8-A894-01 16 8875394 8875394 A T ABAT 3'UTR 0.71 TCGA-Y8-A894-01 17 10315977 10315977 T A MYH8 Missense_Mutation p.R406W 0.49 deleterious(0) probably_damaging(1) TCGA-Y8-A894-01 17 1183315 1183315 C A TUSC5 Missense_Mutation p.S7Y 0.55 deleterious(0) benign(0.423) TCGA-Y8-A894-01 17 2599551 2599552 CC - CLUH Frame_Shift_Del p.V726Sfs*4 0.53 TCGA-Y8-A894-01 17 37880219 37880219 T C ERBB2 Silent p.L755L 0.44 TCGA-Y8-A894-01 17 37880220 37880220 T C ERBB2 Missense_Mutation p.L755S 0.44 deleterious(0) probably_damaging(1) TCGA-Y8-A894-01 17 4997368 4997368 A G ZFP3 3'UTR 0.48 TCGA-Y8-A894-01 17 72913947 72913947 C G USH1G 3'UTR 0.60 TCGA-Y8-A894-01 17 74473013 74473013 C T RHBDF2 Silent p.R367R 0.45 TCGA-Y8-A894-01 18 60985986 60985986 T C BCL2 5'UTR 0.43 TCGA-Y8-A894-01 19 14077230 14077231 - A RFX1 Intron 0.28 TCGA-Y8-A894-01 19 23159254 23159254 C T ZNF728 Silent p.K295K 0.53 TCGA-Y8-A894-01 19 45324244 45324244 C A BCAM 3'UTR 0.45 TCGA-Y8-A894-01 19 45716264 45716264 G A EXOC3L2 3'UTR 0.62 TCGA-Y8-A894-01 19 56156191 56156191 A G ZNF581 Missense_Mutation p.K85R 0.44 tolerated(0.3) benign(0.222) TCGA-Y8-A894-01 1 101006532 101006532 T G GPR88 3'UTR 0.56 TCGA-Y8-A894-01 1 110709482 110709489 AGCTGACA - SLC6A17 5'UTR 0.38 TCGA-Y8-A894-01 1 113237494 113237494 C A MOV10 Silent p.V532V 0.42 TCGA-Y8-A894-01 1 114522738 114522738 A G OLFML3 Intron 0.54 TCGA-Y8-A894-01 1 12855755 12855756 - AA PRAMEF1 Frame_Shift_Ins p.I347Kfs*28 0.17 TCGA-Y8-A894-01 1 152552076 152552076 T AA LCE3D 3'UTR 0.37 TCGA-Y8-A894-01 1 160001302 160001303 - T PIGM Nonsense_Mutation p.Y76* 0.31 TCGA-Y8-A894-01 1 160342127 160342127 T C NHLH1 3'UTR 0.47 TCGA-Y8-A894-01 1 163039075 163039075 G C RGS4 Missense_Mutation p.G31A 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.794) TCGA-Y8-A894-01 1 16563166 16563167 - T RSG1 Nonsense_Mutation p.Y24* 0.26 TCGA-Y8-A894-01 1 179319558 179319558 T G SOAT1 Missense_Mutation p.F481C 0.44 tolerated(0.21) benign(0.044) TCGA-Y8-A894-01 1 18811571 18811571 C T KLHDC7A 3'UTR 0.53 TCGA-Y8-A894-01 1 20811794 20811796 AGG - CAMK2N1 In_Frame_Del p.S26del 0.60 TCGA-Y8-A894-01 1 26288384 26288384 C A PAFAH2 3'UTR 0.29 TCGA-Y8-A894-01 1 33429684 33429684 G T RNF19B Silent p.P201P 0.48 TCGA-Y8-A894-01 20 585018 585018 T A TCF15 3'UTR 0.34 TCGA-Y8-A894-01 20 62595674 62595674 T C ZNF512B Silent p.K444K 0.44 TCGA-Y8-A894-01 21 38878548 38878548 T A DYRK1A Intron 0.52 TCGA-Y8-A894-01 22 24622177 24622177 C T GGT5 Missense_Mutation p.D366N 0.51 tolerated(0.17) benign(0.05) TCGA-Y8-A894-01 22 31529898 31529898 G T INPP5J Splice_Site p.X471_splice 0.55 TCGA-Y8-A894-01 2 108488143 108488143 C T RGPD4 Missense_Mutation p.A1228V 0.43 deleterious(0.05) benign(0.029) TCGA-Y8-A894-01 2 113956437 113956437 C A PSD4 Silent p.P915P 0.57 TCGA-Y8-A894-01 2 11725936 11725936 C T GREB1 Missense_Mutation p.A355V 0.45 tolerated(0.09) benign(0.226) TCGA-Y8-A894-01 2 208461858 208461858 T - CREB1 3'UTR 0.30 TCGA-Y8-A894-01 2 208486600 208486600 C T METTL21A Silent p.E63E 0.07 TCGA-Y8-A894-01 2 239039152 239039152 G A ESPNL Silent p.L599L 0.52 TCGA-Y8-A894-01 2 239039153 239039153 G T ESPNL Missense_Mutation p.V600L 0.53 deleterious(0) benign(0.349) TCGA-Y8-A894-01 3 113377181 113377181 T A KIAA2018 Silent p.A1116A 0.51 TCGA-Y8-A894-01 3 120054774 120054774 T - LRRC58 Frame_Shift_Del p.N176Ifs*10 0.25 TCGA-Y8-A894-01 3 125032253 125032253 C T ZNF148 Missense_Mutation p.D78N 0.47 deleterious(0.04) possibly_damaging(0.704) TCGA-Y8-A894-01 3 13611885 13611885 C A FBLN2 Silent p.A10A 0.53 TCGA-Y8-A894-01 3 184025149 184025149 G C PSMD2 Missense_Mutation p.R680T 0.55 tolerated(0.06) possibly_damaging(0.758) TCGA-Y8-A894-01 3 42201816 42201816 C A TRAK1 Intron 0.53 TCGA-Y8-A894-01 3 49949382 49949382 C A MON1A Nonsense_Mutation p.E161* 0.45 TCGA-Y8-A894-01 3 52282984 52282984 G - PPM1M Frame_Shift_Del p.G119Efs*33 0.34 TCGA-Y8-A894-01 3 88205465 88205465 T A C3orf38 Missense_Mutation p.C224S 0.50 deleterious(0.01) possibly_damaging(0.843) TCGA-Y8-A894-01 4 144141710 144141710 C A USP38 3'UTR 0.62 TCGA-Y8-A894-01 4 173961238 173961238 A G GALNTL6 Missense_Mutation p.H598R 0.49 tolerated_low_confidence(0.38) benign(0.004) TCGA-Y8-A894-01 4 174239640 174239640 G C GALNT7 Missense_Mutation p.G589A 0.49 tolerated(0.28) benign(0.012) TCGA-Y8-A894-01 4 183245238 183245238 G A TENM3 Missense_Mutation p.R22H 0.50 tolerated_low_confidence(0.07) possibly_damaging(0.812) TCGA-Y8-A894-01 4 187004353 187004353 C A TLR3 Missense_Mutation p.L505I 0.41 deleterious(0.02) possibly_damaging(0.721) TCGA-Y8-A894-01 5 150133041 150133041 C A DCTN4 Missense_Mutation p.A129S 0.46 deleterious(0.01) possibly_damaging(0.756) TCGA-Y8-A894-01 5 156671455 156671455 C A ITK Nonsense_Mutation p.Y472* 0.51 TCGA-Y8-A894-01 5 180045796 180045796 G A FLT4 Missense_Mutation p.A992V 0.52 tolerated(0.58) benign(0.015) TCGA-Y8-A894-01 5 33441093 33441093 G A TARS 5'UTR 0.50 TCGA-Y8-A894-01 5 38258772 38258772 G C EGFLAM 5'UTR 0.47 TCGA-Y8-A894-01 5 443345 443377 GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC - EXOC3 5'UTR 0.33 TCGA-Y8-A894-01 5 71015766 71015766 G T CARTPT Missense_Mutation p.E73D 0.57 deleterious(0.02) probably_damaging(0.982) TCGA-Y8-A894-01 6 144508308 144508308 G T STX11 Nonsense_Mutation p.E182* 0.51 TCGA-Y8-A894-01 6 151054930 151054930 G A PLEKHG1 Missense_Mutation p.S38N 0.50 deleterious(0.02) probably_damaging(0.997) TCGA-Y8-A894-01 6 159420999 159420999 T C RSPH3 Missense_Mutation p.K4E 0.47 deleterious_low_confidence(0.02) benign(0.005) TCGA-Y8-A894-01 6 32097573 32097573 C A FKBPL 5'UTR 0.51 TCGA-Y8-A894-01 6 43466745 43466745 T C TJAP1 Silent p.T2T 0.59 TCGA-Y8-A894-01 7 107577548 107577548 T A LAMB1 Silent p.S1312S 0.48 TCGA-Y8-A894-01 7 44268995 44268995 G T CAMK2B Missense_Mutation p.P444Q 0.50 tolerated_low_confidence(0.42) benign(0.013) TCGA-Y8-A894-01 7 5645120 5645120 T C FSCN1 3'UTR 0.29 TCGA-Y8-A894-01 7 87912402 87912402 G T STEAP4 Missense_Mutation p.Q180K 0.56 tolerated(0.97) benign(0.001) TCGA-Y8-A894-01 8 110477416 110477416 G T PKHD1L1 Missense_Mutation p.K2785N 0.46 deleterious(0) probably_damaging(0.991) TCGA-Y8-A894-01 8 124786386 124786386 C T FAM91A1 Nonsense_Mutation p.R47* 0.35 TCGA-Y8-A894-01 8 144917792 144917792 G A NRBP2 3'UTR 0.39 TCGA-Y8-A894-01 8 3253749 3253749 G A CSMD1 Missense_Mutation p.R854C 0.04 probably_damaging(0.999) TCGA-Y8-A894-01 9 124979514 124979514 C A LHX6 Missense_Mutation p.W172L 0.64 deleterious(0) probably_damaging(0.999) TCGA-Y8-A894-01 9 128230280 128230280 G A MAPKAP1 Missense_Mutation p.A439V 0.29 tolerated(0.23) benign(0.392) TCGA-Y8-A894-01 9 130476392 130476392 G T PTRH1 Nonsense_Mutation p.S211* 0.31 TCGA-Y8-A894-01 9 131151666 131151667 GG - URM1 Frame_Shift_Del p.Q105Hfs*8 0.18 TCGA-Y8-A894-01 9 141069913 141069913 C T TUBBP5 RNA 0.16 TCGA-Y8-A894-01 9 71395705 71395705 G A FAM122A Missense_Mutation p.E209K 0.45 deleterious(0.01) probably_damaging(0.975) TCGA-Y8-A894-01 9 75785073 75785073 T - ANXA1 3'UTR 0.29 TCGA-Y8-A894-01 9 86495384 86495384 C A KIF27 Missense_Mutation p.S824I 0.52 deleterious(0.03) possibly_damaging(0.461) TCGA-Y8-A894-01 X 135630875 135630875 G C VGLL1 Missense_Mutation p.Q114H 0.47 tolerated(0.21) benign(0.038) TCGA-Y8-A894-01 X 152988658 152988658 C T BCAP31 Silent p.A81A 0.44 TCGA-Y8-A894-01 X 153216353 153216353 A G HCFC1 Missense_Mutation p.C1872R 0.48 deleterious(0) probably_damaging(0.974) TCGA-Y8-A894-01 X 18598004 18598004 G T CDKL5 Missense_Mutation p.V107F 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.748) TCGA-Y8-A894-01 X 47326949 47326949 A G ZNF41 5'UTR 0.34 TCGA-Y8-A894-01 X 67731818 67731818 T A YIPF6 Missense_Mutation p.I62N 0.57 deleterious(0) possibly_damaging(0.845) TCGA-Y8-A894-01 X 69844743 69844743 A C TEX11 Missense_Mutation p.L562W 0.42 deleterious(0) probably_damaging(1) TCGA-Y8-A894-01 X 70350038 70350038 C T MED12 Missense_Mutation p.R1341W 0.49 possibly_damaging(0.836) TCGA-Y8-A895-01 10 123846150 123846150 G C TACC2 Missense_Mutation p.E1379Q 0.37 benign(0.333) TCGA-Y8-A895-01 10 124896686 124896686 C G HMX3 Missense_Mutation p.S171R 0.36 deleterious(0.01) possibly_damaging(0.737) TCGA-Y8-A895-01 10 61023877 61023877 T C FAM13C Missense_Mutation p.N331S 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-Y8-A895-01 10 79397504 79397504 C T KCNMA1 5'Flank 0.29 TCGA-Y8-A895-01 10 82280520 82280520 G T TSPAN14 3'UTR 0.39 TCGA-Y8-A895-01 10 88819991 88819991 G T GLUD1 Missense_Mutation p.A402D 0.35 deleterious(0) probably_damaging(0.967) TCGA-Y8-A895-01 11 111753128 111753128 T A C11orf1 Missense_Mutation p.C28S 0.36 tolerated(0.35) benign(0.077) TCGA-Y8-A895-01 11 119290952 119290959 TGCTTCTT - THY1 Frame_Shift_Del p.K59Rfs*10 0.33 TCGA-Y8-A895-01 11 121430332 121430332 G T SORL1 Missense_Mutation p.M1005I 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-Y8-A895-01 11 123516378 123516378 T A SCN3B Missense_Mutation p.I46F 0.38 deleterious(0) probably_damaging(0.999) TCGA-Y8-A895-01 11 33373178 33373178 T C HIPK3 Silent p.S944S 0.07 TCGA-Y8-A895-01 11 59573911 59573911 T A MRPL16 Missense_Mutation p.N222I 0.42 deleterious(0) probably_damaging(0.999) TCGA-Y8-A895-01 11 59573937 59573937 C G MRPL16 Missense_Mutation p.W213C 0.48 deleterious(0) probably_damaging(0.954) TCGA-Y8-A895-01 11 61643890 61643899 TCTGTGTGAT - FADS3 Frame_Shift_Del p.I338* 0.18 TCGA-Y8-A895-01 11 61730245 61730245 A G BEST1 Missense_Mutation p.N480S 0.29 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-Y8-A895-01 11 65308749 65308749 T C LTBP3 Missense_Mutation p.H914R 0.45 tolerated(0.12) benign(0.028) TCGA-Y8-A895-01 11 65628121 65628121 C T MUS81 5'UTR 0.62 TCGA-Y8-A895-01 11 720135 720135 A G EPS8L2 Missense_Mutation p.Q80R 0.35 deleterious(0.03) benign(0.371) TCGA-Y8-A895-01 11 93455212 93455212 T C KIAA1731 Silent p.D1981D 0.48 TCGA-Y8-A895-01 11 95580921 95580921 C A MTMR2 Missense_Mutation p.W379L 0.40 deleterious(0) probably_damaging(0.952) TCGA-Y8-A895-01 12 107103182 107103182 A G RFX4 Missense_Mutation p.E312G 0.37 deleterious(0) possibly_damaging(0.648) TCGA-Y8-A895-01 12 116460358 116460358 A G MED13L Silent p.N176N 0.36 TCGA-Y8-A895-01 12 123311080 123311080 G C CCDC62 3'UTR 0.38 TCGA-Y8-A895-01 12 129293996 129293996 T C SLC15A4 Missense_Mutation p.Q345R 0.12 deleterious(0) probably_damaging(0.997) TCGA-Y8-A895-01 12 132379515 132379515 C T ULK1 5'UTR 0.33 TCGA-Y8-A895-01 12 18854673 18854673 A T PLCZ1 Missense_Mutation p.I301K 0.43 deleterious(0) benign(0.027) TCGA-Y8-A895-01 12 21459852 21459852 C A SLCO1A2 Nonsense_Mutation p.G136* 0.33 TCGA-Y8-A895-01 12 56994768 56994768 T G BAZ2A Missense_Mutation p.H1472P 0.39 deleterious(0) benign(0.356) TCGA-Y8-A895-01 12 57600368 57600368 C T LRP1 Silent p.R3901R 0.47 TCGA-Y8-A895-01 12 57969029 57969029 T A KIF5A Missense_Mutation p.S627T 0.07 tolerated(0.12) possibly_damaging(0.837) TCGA-Y8-A895-01 12 6561401 6561401 C G TAPBPL 5'UTR 0.37 TCGA-Y8-A895-01 13 46054274 46054274 A - COG3 Frame_Shift_Del p.Y133Sfs*13 0.25 TCGA-Y8-A895-01 14 102550893 102550893 T C HSP90AA1 Silent p.S452S 0.36 TCGA-Y8-A895-01 14 105207480 105207480 G T ADSSL1 Missense_Mutation p.M274I 0.42 deleterious(0.03) benign(0.375) TCGA-Y8-A895-01 14 76045630 76045630 C G FLVCR2 Nonsense_Mutation p.Y105* 0.11 TCGA-Y8-A895-01 14 88707144 88707144 A C KCNK10 Missense_Mutation p.N141K 0.43 tolerated(0.32) possibly_damaging(0.527) TCGA-Y8-A895-01 14 89061310 89061310 A C ZC3H14 Intron 0.37 TCGA-Y8-A895-01 14 89128042 89128042 C A EML5 Missense_Mutation p.G1211W 0.38 deleterious(0) probably_damaging(1) TCGA-Y8-A895-01 15 28499655 28499655 C T HERC2 Missense_Mutation p.A961T 0.32 benign(0.001) TCGA-Y8-A895-01 15 41063821 41063821 A C C15orf62 3'UTR 0.33 TCGA-Y8-A895-01 15 55474229 55474229 A G RSL24D1 3'UTR 0.30 TCGA-Y8-A895-01 15 63824767 63824771 ACTTA CTTT USP3 Intron 0.39 TCGA-Y8-A895-01 15 64025169 64025169 G T HERC1 Missense_Mutation p.A941D 0.38 probably_damaging(0.946) TCGA-Y8-A895-01 15 90903900 90903900 C T ZNF774 Silent p.I279I 0.07 TCGA-Y8-A895-01 16 15820719 15820720 - TT MYH11 Frame_Shift_Ins p.V1289Kfs*177 0.21 TCGA-Y8-A895-01 16 20380839 20380839 C T PDILT Missense_Mutation p.R364H 0.29 tolerated(0.23) benign(0.004) TCGA-Y8-A895-01 16 21261239 21261239 G C ANKS4B Missense_Mutation p.D118H 0.32 deleterious(0) probably_damaging(1) TCGA-Y8-A895-01 16 2168325 2168325 G A PKD1 Missense_Mutation p.A223V 0.27 benign(0.271) TCGA-Y8-A895-01 16 27374814 27374814 C A IL4R Nonsense_Mutation p.S714* 0.35 TCGA-Y8-A895-01 16 29819392 29819392 G A MAZ Intron 0.68 TCGA-Y8-A895-01 16 30794005 30794005 G A ZNF629 Silent p.G548G 0.41 TCGA-Y8-A895-01 16 31143314 31143314 T C PRSS8 3'UTR 0.34 TCGA-Y8-A895-01 16 31766700 31766700 C A ZNF720 Intron 0.54 TCGA-Y8-A895-01 16 929597 929597 G T LMF1 Silent p.I290I 0.22 TCGA-Y8-A895-01 17 11584061 11584062 - AC DNAH9 Frame_Shift_Ins p.I1201Tfs*2 0.21 TCGA-Y8-A895-01 17 1650673 1650673 G A SERPINF2 Silent p.T194T 0.56 TCGA-Y8-A895-01 17 1787152 1787152 C T RPA1 Silent p.L430L 0.21 TCGA-Y8-A895-01 17 27383429 27383429 C G PIPOX 3'UTR 0.54 TCGA-Y8-A895-01 17 39674603 39674617 GGTCTTGAAGTATTG - KRT15 In_Frame_Del p.Q155_T159del 0.47 TCGA-Y8-A895-01 17 40744166 40744171 GTCAGG - FAM134C In_Frame_Del p.L84_T85del 0.56 TCGA-Y8-A895-01 17 77987194 77987194 C T TBC1D16 Silent p.G51G 0.52 TCGA-Y8-A895-01 17 7983783 7983783 G C AC129492.6 Missense_Mutation p.G155A 0.56 unknown(0) TCGA-Y8-A895-01 19 1251579 1251580 - C MIDN Frame_Shift_Ins p.L85Pfs*8 0.20 TCGA-Y8-A895-01 19 13394119 13394119 C T CACNA1A Missense_Mutation p.A1262T 0.38 benign(0.045) TCGA-Y8-A895-01 19 17740112 17740112 G A UNC13A Silent p.L1230L 0.30 TCGA-Y8-A895-01 19 18778568 18778568 G A KLHL26 Missense_Mutation p.A121T 0.33 tolerated(0.24) probably_damaging(0.985) TCGA-Y8-A895-01 19 33078085 33078085 A - PDCD5 Intron 0.22 TCGA-Y8-A895-01 19 35837707 35837707 A G CD22 3'UTR 0.08 TCGA-Y8-A895-01 19 37309949 37309949 A C ZNF790 Missense_Mutation p.W433G 0.42 tolerated(0.33) benign(0.348) TCGA-Y8-A895-01 19 376011 376011 G A THEG 5'UTR 0.54 TCGA-Y8-A895-01 19 40521132 40521132 T A ZNF546 Missense_Mutation p.L652H 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-Y8-A895-01 19 45404672 45404672 T A TOMM40 Intron 0.56 TCGA-Y8-A895-01 19 48956474 48956474 G T GRWD1 3'UTR 0.27 TCGA-Y8-A895-01 19 53268927 53268927 G C ZNF600 Nonsense_Mutation p.Y694* 0.37 TCGA-Y8-A895-01 19 56203191 56203191 C G EPN1 Silent p.G364G 0.38 TCGA-Y8-A895-01 19 56671522 56671522 T A ZNF444 Silent p.A312A 0.45 TCGA-Y8-A895-01 19 58233805 58233805 T A ZNF671 Silent p.G89G 0.30 TCGA-Y8-A895-01 19 58320331 58320331 C A ZNF552 Nonsense_Mutation p.G101* 0.39 TCGA-Y8-A895-01 1 149882136 149882136 G C SV2A Missense_Mutation p.R359G 0.49 deleterious(0) benign(0.397) TCGA-Y8-A895-01 1 150936091 150936091 C A SETDB1 Missense_Mutation p.N1181K 0.08 tolerated(0.37) benign(0.412) TCGA-Y8-A895-01 1 151259239 151259239 A G ZNF687 Missense_Mutation p.T158A 0.44 tolerated_low_confidence(1) benign(0) TCGA-Y8-A895-01 1 153921707 153921707 A C CRTC2 Missense_Mutation p.S520A 0.38 tolerated(0.26) benign(0.006) TCGA-Y8-A895-01 1 160206968 160206968 C T DCAF8 Missense_Mutation p.A306T 0.38 deleterious(0.01) possibly_damaging(0.843) TCGA-Y8-A895-01 1 16953665 16953666 GT - CROCCP2 3'Flank 0.14 TCGA-Y8-A895-01 1 192628732 192628732 T C RGS13 3'UTR 0.20 TCGA-Y8-A895-01 1 227182647 227182647 C A CDC42BPA Missense_Mutation p.R1635S 0.41 tolerated(0.2) possibly_damaging(0.81) TCGA-Y8-A895-01 1 246021812 246021812 G A SMYD3 Silent p.T354T 0.40 TCGA-Y8-A895-01 1 6586011 6586011 A C NOL9 Missense_Mutation p.L671R 0.46 deleterious(0) possibly_damaging(0.705) TCGA-Y8-A895-01 1 89889876 89889876 A T GBP1P1 RNA 0.36 TCGA-Y8-A895-01 1 91977470 91977470 C T CDC7 Missense_Mutation p.R188C 0.37 deleterious(0.02) benign(0.052) TCGA-Y8-A895-01 1 93029241 93029241 A C EVI5 Nonsense_Mutation p.Y692* 0.24 TCGA-Y8-A895-01 20 309125 309125 G C SOX12 3'UTR 0.54 TCGA-Y8-A895-01 20 31292673 31292673 C T COMMD7 Missense_Mutation p.A124T 0.28 deleterious(0.02) possibly_damaging(0.899) TCGA-Y8-A895-01 20 33585257 33585257 G T MYH7B Missense_Mutation p.E1229D 0.60 benign(0.129) TCGA-Y8-A895-01 20 40033109 40033109 A G CHD6 3'UTR 0.73 TCGA-Y8-A895-01 21 11021113 11021113 A C BAGE2 RNA 0.07 TCGA-Y8-A895-01 22 20383903 20383903 A G AC023490.1 3'Flank 0.36 TCGA-Y8-A895-01 22 21357247 21357247 C A AC002472.1 3'Flank 0.29 TCGA-Y8-A895-01 22 23632573 23632573 T G BCR Missense_Mutation p.S919A 0.48 deleterious(0.03) possibly_damaging(0.602) TCGA-Y8-A895-01 22 29138082 29138085 AGAT - HSCB Missense_Mutation 0.58 TCGA-Y8-A895-01 2 110323346 110323346 C G SEPT10 Missense_Mutation p.V285L 0.36 tolerated(0.23) probably_damaging(0.997) TCGA-Y8-A895-01 2 128605407 128605407 G C POLR2D 3'UTR 0.50 TCGA-Y8-A895-01 2 161056748 161056748 T A ITGB6 5'UTR 0.50 TCGA-Y8-A895-01 2 171699198 171699198 C T GAD1 Intron 0.07 TCGA-Y8-A895-01 2 176982235 176982235 T G HOXD10 Missense_Mutation p.L225R 0.38 tolerated(0.52) benign(0.034) TCGA-Y8-A895-01 2 192194689 192194689 T G MYO1B Missense_Mutation p.S94A 0.07 tolerated(0.06) benign(0.393) TCGA-Y8-A895-01 2 20840800 20840800 A G HS1BP3 Silent p.N113N 0.37 TCGA-Y8-A895-01 2 74044108 74044108 T C C2orf78 Missense_Mutation p.Y920H 0.32 deleterious(0.03) probably_damaging(0.986) TCGA-Y8-A895-01 2 89475990 89475990 A G IGKV2-24 Missense_Mutation p.L61P 0.35 deleterious(0) possibly_damaging(0.531) TCGA-Y8-A895-01 3 11851067 11851067 A T TAMM41 Silent p.P266P 0.24 TCGA-Y8-A895-01 3 127335805 127335805 G A MCM2 Silent p.V539V 0.29 TCGA-Y8-A895-01 3 46477717 46477717 A T LTF Missense_Mutation p.L701H 0.51 deleterious(0) possibly_damaging(0.572) TCGA-Y8-A895-01 3 56680758 56680758 T - FAM208A Frame_Shift_Del p.R669Sfs*16 0.34 TCGA-Y8-A895-01 4 38799493 38799493 A T TLR1 Nonsense_Mutation p.Y320* 0.32 TCGA-Y8-A895-01 4 42400345 42400345 C A SHISA3 Missense_Mutation p.T91N 0.46 tolerated(0.15) benign(0.085) TCGA-Y8-A895-01 4 56858116 56858116 A T CEP135 Missense_Mutation p.Y625F 0.38 tolerated(0.38) benign(0.001) TCGA-Y8-A895-01 5 115336134 115336134 C T AQPEP Missense_Mutation p.A507V 0.05 deleterious(0) probably_damaging(0.992) TCGA-Y8-A895-01 5 132061864 132061864 C T KIF3A Missense_Mutation p.E156K 0.43 deleterious(0.02) benign(0.302) TCGA-Y8-A895-01 5 145894579 145894579 G A GPR151 Silent p.S366S 0.31 TCGA-Y8-A895-01 5 145894580 145894580 C T GPR151 Missense_Mutation p.S366N 0.31 tolerated(0.4) benign(0.034) TCGA-Y8-A895-01 5 176815315 176815316 - TGAGTCCC SLC34A1 Frame_Shift_Ins p.R297Sfs*3 0.19 TCGA-Y8-A895-01 6 102130441 102130441 G C GRIK2 Missense_Mutation p.G246A 0.33 deleterious(0.02) possibly_damaging(0.599) TCGA-Y8-A895-01 6 136597062 136597062 C T BCLAF1 Missense_Mutation p.R534K 0.30 tolerated(0.39) benign(0.14) TCGA-Y8-A895-01 6 146720170 146720170 C T GRM1 Silent p.G665G 0.45 TCGA-Y8-A895-01 6 152675910 152675910 C G SYNE1 Missense_Mutation p.E3604Q 0.38 benign(0.091) TCGA-Y8-A895-01 6 35262232 35262232 G A ZNF76 Splice_Site p.X499_splice 0.25 TCGA-Y8-A895-01 6 38850785 38850785 T G DNAH8 Missense_Mutation p.I2436S 0.35 benign(0.115) TCGA-Y8-A895-01 6 41160097 41160097 T A TREML2 3'UTR 0.35 TCGA-Y8-A895-01 6 50791382 50791382 G A TFAP2B Missense_Mutation p.G115D 0.41 tolerated(0.07) benign(0.023) TCGA-Y8-A895-01 6 7578083 7578083 C G DSP Silent p.T983T 0.39 TCGA-Y8-A895-01 6 79672856 79672856 A G PHIP Missense_Mutation p.C1165R 0.44 deleterious(0) probably_damaging(0.972) TCGA-Y8-A895-01 7 100817600 100817600 C T NAT16 Intron 0.42 TCGA-Y8-A895-01 7 127231490 127231490 T A ARF5 3'UTR 0.32 TCGA-Y8-A895-01 7 208912 208912 G A FAM20C Missense_Mutation p.G267S 0.32 deleterious(0.04) probably_damaging(0.983) TCGA-Y8-A895-01 7 22200164 22200164 G A RAPGEF5 Nonsense_Mutation p.Q347* 0.43 TCGA-Y8-A895-01 7 27224836 27224836 C G HOXA11 5'Flank 0.23 TCGA-Y8-A895-01 7 38305038 38305038 T C TRGC1 Silent p.S81S 0.19 TCGA-Y8-A895-01 7 47859375 47859375 T C C7orf69 3'UTR 0.79 TCGA-Y8-A895-01 7 75070792 75070792 A G POM121C 5'UTR 0.24 TCGA-Y8-A895-01 7 98562256 98562256 C A TRRAP Silent p.T2271T 0.59 TCGA-Y8-A895-01 7 99767761 99767761 G A GPC2 3'UTR 0.50 TCGA-Y8-A895-01 8 57079249 57079250 - A PLAG1 Frame_Shift_Ins p.L352Ffs*6 0.29 TCGA-Y8-A895-01 8 59059040 59059040 C A FAM110B Missense_Mutation p.P84Q 0.04 tolerated(0.31) probably_damaging(0.954) TCGA-Y8-A895-01 8 86119659 86119659 G C E2F5 Splice_Site p.X184_splice 0.27 TCGA-Y8-A895-01 9 130486923 130486923 G T TTC16 Intron 0.38 TCGA-Y8-A895-01 9 33048246 33048246 C A SMU1 Missense_Mutation p.S434I 0.32 deleterious(0) benign(0.181) TCGA-Y8-A895-01 9 80043875 80043875 A - GNA14 Frame_Shift_Del p.F224Sfs*5 0.28 TCGA-Y8-A895-01 X 49957181 49957181 G T AKAP4 Missense_Mutation p.A728E 0.21 tolerated(0.32) benign(0.093) TCGA-Y8-A895-01 X 84342691 84342692 - TGCA APOOL 3'UTR 0.63 TCGA-Y8-A896-01 10 105963395 105963395 A - WDR96 Intron 0.21 TCGA-Y8-A896-01 10 123239237 123239237 T C FGFR2 3'Flank 0.25 TCGA-Y8-A896-01 10 12870792 12870792 G - CAMK1D Frame_Shift_Del p.S355Ifs*23 0.18 TCGA-Y8-A896-01 10 43326332 43326332 G C BMS1 Missense_Mutation p.A1213P 0.28 tolerated(0.06) benign(0.106) TCGA-Y8-A896-01 10 63188776 63188776 T C TMEM26 Silent p.R171R 0.31 TCGA-Y8-A896-01 10 64966402 64966402 C A JMJD1C Missense_Mutation p.R1676M 0.25 deleterious(0) probably_damaging(0.999) TCGA-Y8-A896-01 10 91162887 91162887 C T IFIT1 Silent p.V285V 0.28 TCGA-Y8-A896-01 10 95660559 95660559 G A SLC35G1 Missense_Mutation p.G137E 0.25 deleterious(0) probably_damaging(0.997) TCGA-Y8-A896-01 10 97143753 97143753 T C SORBS1 Silent p.S509S 0.24 TCGA-Y8-A896-01 11 108369097 108369097 C G KDELC2 5'UTR 0.27 TCGA-Y8-A896-01 11 113270138 113270138 C T ANKK1 Missense_Mutation p.R483C 0.23 deleterious(0.03) benign(0.24) TCGA-Y8-A896-01 11 118250311 118250315 CATGA - UBE4A Frame_Shift_Del p.M582Rfs*27 0.35 TCGA-Y8-A896-01 11 237012 237012 C A PSMD13 5'UTR 0.14 TCGA-Y8-A896-01 11 33689793 33689793 A G KIAA1549L 3'UTR 0.24 TCGA-Y8-A896-01 11 65810751 65810751 C T GAL3ST3 Missense_Mutation p.V175I 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-Y8-A896-01 11 74800264 74800264 T C OR2AT4 Silent p.V165V 0.24 TCGA-Y8-A896-01 12 102108308 102108308 G T CHPT1 Missense_Mutation p.A150S 0.05 tolerated(0.32) possibly_damaging(0.531) TCGA-Y8-A896-01 12 124496608 124496609 AG - ZNF664 5'UTR 0.19 TCGA-Y8-A896-01 12 44142290 44142290 A G PUS7L Missense_Mutation p.Y345H 0.21 deleterious(0) probably_damaging(0.992) TCGA-Y8-A896-01 12 50236871 50236871 T G BCDIN3D 5'UTR 0.32 TCGA-Y8-A896-01 12 54428450 54428450 G - HOXC5 3'UTR 0.47 TCGA-Y8-A896-01 12 56360751 56360751 C T CDK2 5'UTR 0.30 TCGA-Y8-A896-01 12 57422488 57422488 T C MYO1A 3'UTR 0.35 TCGA-Y8-A896-01 12 7293886 7293886 A C CLSTN3 Missense_Mutation p.T458P 0.24 tolerated(0.05) possibly_damaging(0.734) TCGA-Y8-A896-01 13 115008769 115008769 G T CDC16 Silent p.L193L 0.29 TCGA-Y8-A896-01 13 25284611 25284611 G C ATP12A Missense_Mutation p.R932T 0.27 deleterious(0.01) probably_damaging(1) TCGA-Y8-A896-01 13 45148256 45148256 G A TSC22D1 Missense_Mutation p.P652L 0.38 tolerated(0.06) probably_damaging(0.94) TCGA-Y8-A896-01 14 102800982 102800982 A C ZNF839 Missense_Mutation p.K503T 0.33 deleterious(0) probably_damaging(0.999) TCGA-Y8-A896-01 14 24682658 24682658 T A CHMP4A Missense_Mutation p.R39S 0.26 tolerated(0.26) benign(0.001) TCGA-Y8-A896-01 14 38266062 38266062 T A TTC6 Silent p.I1313I 0.27 TCGA-Y8-A896-01 14 50089822 50089822 G C MGAT2 3'UTR 0.25 TCGA-Y8-A896-01 14 52534874 52534874 G A NID2 Missense_Mutation p.T79I 0.18 deleterious(0) probably_damaging(0.955) TCGA-Y8-A896-01 14 57863579 57863579 G A NAA30 Missense_Mutation p.R294K 0.38 deleterious(0) probably_damaging(0.951) TCGA-Y8-A896-01 14 64450471 64450471 T C SYNE2 Missense_Mutation p.L673P 0.25 probably_damaging(0.914) TCGA-Y8-A896-01 14 88935278 88935278 G C PTPN21 Silent p.A1126A 0.29 TCGA-Y8-A896-01 15 60797807 60797807 G A RORA Missense_Mutation p.S314F 0.41 tolerated(0.07) possibly_damaging(0.72) TCGA-Y8-A896-01 15 65449216 65449216 T C CLPX Missense_Mutation p.Q371R 0.27 tolerated(0.06) probably_damaging(0.988) TCGA-Y8-A896-01 16 4430907 4430907 C T VASN Missense_Mutation p.P10L 0.27 tolerated(0.48) possibly_damaging(0.726) TCGA-Y8-A896-01 16 51173002 51173006 AAATT - SALL1 Frame_Shift_Del p.N1043Efs*18 0.29 TCGA-Y8-A896-01 16 74335517 74335517 C G PSMD7 Missense_Mutation p.I108M 0.20 deleterious(0) probably_damaging(0.966) TCGA-Y8-A896-01 17 2595757 2595757 A C CLUH Missense_Mutation p.L1114R 0.29 deleterious(0) probably_damaging(1) TCGA-Y8-A896-01 17 34499281 34499281 G A TBC1D3B Missense_Mutation p.R144C 0.17 deleterious(0.01) benign(0) TCGA-Y8-A896-01 17 3845964 3845964 A - ATP2A3 Frame_Shift_Del p.M494Sfs*21 0.10 TCGA-Y8-A896-01 17 66533568 66533568 C G FAM20A 3'UTR 0.33 TCGA-Y8-A896-01 17 8049997 8049997 G T PER1 Missense_Mutation p.L608I 0.22 tolerated(0.19) benign(0.004) TCGA-Y8-A896-01 18 214669 214669 T C THOC1 Missense_Mutation p.D644G 0.28 tolerated(0.18) benign(0.009) TCGA-Y8-A896-01 18 24056561 24056561 A G KCTD1 Missense_Mutation p.F76S 0.29 deleterious(0) probably_damaging(0.995) TCGA-Y8-A896-01 18 32920341 32920349 AGATTTGTT - ZNF24 In_Frame_Del p.E89_L92delinsV 0.28 TCGA-Y8-A896-01 18 51820257 51820257 C A POLI Missense_Mutation p.S548Y 0.29 deleterious(0) possibly_damaging(0.482) TCGA-Y8-A896-01 18 5397279 5397279 C T EPB41L3 Silent p.S873S 0.30 TCGA-Y8-A896-01 19 10563955 10563957 TTC AA PDE4A Intron 0.37 TCGA-Y8-A896-01 19 18555598 18555598 G A ELL Silent p.A610A 0.24 TCGA-Y8-A896-01 19 43376066 43376066 G A PSG1 Missense_Mutation p.P188S 0.25 deleterious(0.01) probably_damaging(0.966) TCGA-Y8-A896-01 19 44285170 44285170 G A KCNN4 5'UTR 0.27 TCGA-Y8-A896-01 19 54684568 54684568 G A MBOAT7 Missense_Mutation p.A259V 0.23 deleterious(0) probably_damaging(0.964) TCGA-Y8-A896-01 19 5824091 5824091 A G NRTN 5'UTR 0.15 TCGA-Y8-A896-01 1 110031671 110031671 G A ATXN7L2 Missense_Mutation p.S329N 0.28 tolerated(0.31) benign(0.008) TCGA-Y8-A896-01 1 11994805 11994805 C G PLOD1 5'Flank 0.37 TCGA-Y8-A896-01 1 154099879 154099879 G A NUP210L Missense_Mutation p.P365S 0.17 deleterious(0.02) benign(0.164) TCGA-Y8-A896-01 1 16199544 16199544 G T SPEN Missense_Mutation p.G106V 0.26 probably_damaging(1) TCGA-Y8-A896-01 1 167906148 167906148 C T DCAF6 5'UTR 0.32 TCGA-Y8-A896-01 1 169528453 169528453 C A F5 Missense_Mutation p.S223I 0.40 deleterious(0) probably_damaging(0.982) TCGA-Y8-A896-01 1 179494536 179494538 AGG - AXDND1 In_Frame_Del p.E856del 0.27 TCGA-Y8-A896-01 1 183072766 183072766 A G LAMC1 Missense_Mutation p.Q241R 0.33 deleterious(0) probably_damaging(0.998) TCGA-Y8-A896-01 1 183891469 183891469 A G RGL1 Silent p.K741K 0.25 TCGA-Y8-A896-01 1 186008011 186008011 A G HMCN1 Missense_Mutation p.T1968A 0.25 benign(0.02) TCGA-Y8-A896-01 1 230486768 230486768 T G PGBD5 Missense_Mutation p.K208T 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-Y8-A896-01 1 27874121 27874121 G A AHDC1 Silent p.A1502A 0.25 TCGA-Y8-A896-01 1 53684086 53684086 C G C1orf123 Missense_Mutation p.E77Q 0.36 deleterious(0.01) benign(0.375) TCGA-Y8-A896-01 1 6517308 6517308 A G ESPN Missense_Mutation p.K797R 0.27 deleterious(0) probably_damaging(0.998) TCGA-Y8-A896-01 20 37216742 37216742 A C ADIG Splice_Site 0.25 TCGA-Y8-A896-01 20 42198049 42198049 A G SGK2 Missense_Mutation p.S145G 0.27 deleterious(0.01) benign(0.254) TCGA-Y8-A896-01 20 42199282 42199282 G A SGK2 Missense_Mutation p.R189H 0.17 deleterious(0.04) benign(0.09) TCGA-Y8-A896-01 20 4705818 4705818 T G PRND 3'UTR 0.26 TCGA-Y8-A896-01 20 56136506 56136507 - A PCK1 Frame_Shift_Ins p.V15Sfs*20 0.20 TCGA-Y8-A896-01 20 62373951 62373951 A T SLC2A4RG Missense_Mutation p.S315C 0.27 deleterious(0.01) possibly_damaging(0.893) TCGA-Y8-A896-01 20 62851316 62851316 G A MYT1 Missense_Mutation p.R741K 0.30 probably_damaging(0.997) TCGA-Y8-A896-01 21 43529755 43529755 C T UMODL1 Nonsense_Mutation p.Q535* 0.22 TCGA-Y8-A896-01 21 43771106 43771106 A G TFF2 5'UTR 0.30 TCGA-Y8-A896-01 22 30060995 30060996 - GG NF2 Frame_Shift_Ins p.D277Gfs*20 0.28 TCGA-Y8-A896-01 22 39714556 39714556 G T RPL3 Silent p.G15G 0.09 TCGA-Y8-A896-01 2 113405235 113405235 T G SLC20A1 Missense_Mutation p.S161A 0.31 deleterious(0.04) probably_damaging(0.993) TCGA-Y8-A896-01 2 121107030 121107030 C G INHBB Silent p.G268G 0.25 TCGA-Y8-A896-01 2 131673072 131673072 C T ARHGEF4 5'Flank 0.29 TCGA-Y8-A896-01 2 190557049 190557049 T C ANKAR Missense_Mutation p.F370L 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-Y8-A896-01 2 20101507 20101507 G T TTC32 Silent p.R37R 0.36 TCGA-Y8-A896-01 2 207631966 207631966 C A FASTKD2 Missense_Mutation p.N183K 0.32 tolerated(0.12) benign(0.038) TCGA-Y8-A896-01 2 220090237 220090237 G A ATG9A Silent p.D90D 0.28 TCGA-Y8-A896-01 2 233394851 233394851 T C CHRND Splice_Site p.X274_splice 0.17 TCGA-Y8-A896-01 2 25061347 25061347 C T ADCY3 Silent p.K500K 0.28 TCGA-Y8-A896-01 2 74725195 74725196 - GCGA LBX2 Frame_Shift_Ins p.S149Rfs*33 0.23 TCGA-Y8-A896-01 2 74902678 74902678 C T SEMA4F Missense_Mutation p.R467W 0.23 tolerated(0.08) possibly_damaging(0.803) TCGA-Y8-A896-01 2 9496455 9496455 C T ASAP2 Silent p.C436C 0.29 TCGA-Y8-A896-01 2 9547719 9547719 C A ITGB1BP1 Missense_Mutation p.L130F 0.36 tolerated(0.1) probably_damaging(0.979) TCGA-Y8-A896-01 2 99238125 99238125 C T MGAT4A 3'UTR 0.36 TCGA-Y8-A896-01 3 132395353 132395353 A - UBA5 Frame_Shift_Del p.M401* 0.20 TCGA-Y8-A896-01 3 180688019 180688019 T C FXR1 Silent p.D492D 0.26 TCGA-Y8-A896-01 3 183700580 183700580 T - ABCC5 Frame_Shift_Del p.E270Rfs*37 0.14 TCGA-Y8-A896-01 3 185364916 185364916 A G IGF2BP2 Missense_Mutation p.L535P 0.18 deleterious(0) probably_damaging(1) TCGA-Y8-A896-01 3 39438077 39438077 T G SLC25A38 3'UTR 0.16 TCGA-Y8-A896-01 3 45972569 45972569 C G FYCO1 Missense_Mutation p.Q1415H 0.37 tolerated(0.07) possibly_damaging(0.735) TCGA-Y8-A896-01 3 47680268 47680268 C T SMARCC1 Missense_Mutation p.G775R 0.26 tolerated(0.06) possibly_damaging(0.536) TCGA-Y8-A896-01 3 48200920 48200920 G A CDC25A Missense_Mutation p.R450C 0.30 deleterious(0.01) probably_damaging(1) TCGA-Y8-A896-01 3 48465669 48465669 C A PLXNB1 Missense_Mutation p.V118F 0.38 deleterious(0) possibly_damaging(0.887) TCGA-Y8-A896-01 3 48619024 48619024 C T COL7A1 Silent p.K1588K 0.16 TCGA-Y8-A896-01 3 48691308 48691308 T A CELSR3 Intron 0.30 TCGA-Y8-A896-01 3 49064477 49064477 T C IMPDH2 Missense_Mutation p.M179V 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-Y8-A896-01 3 49734840 49734840 C A RNF123 Missense_Mutation p.H98N 0.29 deleterious(0.03) probably_damaging(0.984) TCGA-Y8-A896-01 3 51897038 51897038 G T IQCF2 Missense_Mutation p.K49N 0.08 deleterious(0.03) possibly_damaging(0.776) TCGA-Y8-A896-01 5 140431589 140431589 C T PCDHB1 Silent p.F178F 0.22 TCGA-Y8-A896-01 5 151231124 151231124 G A GLRA1 Nonsense_Mutation p.Q247* 0.30 TCGA-Y8-A896-01 5 153078598 153078598 G T GRIA1 Missense_Mutation p.A483S 0.30 tolerated(1) benign(0.217) TCGA-Y8-A896-01 5 19473544 19473544 C T CDH18 Missense_Mutation p.E722K 0.29 deleterious(0) possibly_damaging(0.67) TCGA-Y8-A896-01 5 60825930 60825930 G A ZSWIM6 Missense_Mutation p.G630E 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-Y8-A896-01 5 79031309 79031309 G A CMYA5 Missense_Mutation p.V2241I 0.25 benign(0.025) TCGA-Y8-A896-01 5 85915264 85915264 G A COX7C Missense_Mutation p.R57K 0.23 deleterious(0.03) benign(0.026) TCGA-Y8-A896-01 6 21597804 21597804 C A SOX4 3'UTR 0.33 TCGA-Y8-A896-01 6 34100828 34100828 C A GRM4 Missense_Mutation p.R149L 0.34 tolerated(0.33) probably_damaging(0.999) TCGA-Y8-A896-01 7 100304790 100304790 C A POP7 Missense_Mutation p.P113T 0.23 deleterious(0.03) probably_damaging(0.971) TCGA-Y8-A896-01 7 150884750 150884750 G A ASB10 5'Flank 0.21 TCGA-Y8-A896-01 7 27135159 27135159 G A HOXA1 Nonsense_Mutation p.Q125* 0.20 TCGA-Y8-A896-01 7 27809433 27809433 C A TAX1BP1 Missense_Mutation p.Q198K 0.23 tolerated(0.35) benign(0.007) TCGA-Y8-A896-01 7 44069036 44069036 G A RASA4CP RNA 0.45 TCGA-Y8-A896-01 7 63538066 63538066 A T ZNF727 Silent p.S213S 0.46 TCGA-Y8-A896-01 7 6797488 6797488 C A RSPH10B2 Missense_Mutation p.D60E 0.21 tolerated(1) benign(0.002) TCGA-Y8-A896-01 7 72297496 72297496 A G TYW1B Missense_Mutation p.Y25H 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-Y8-A896-01 7 73152722 73152722 A T ABHD11 Missense_Mutation p.L75H 0.18 deleterious(0) probably_damaging(0.999) TCGA-Y8-A896-01 7 79840317 79840317 G C GNAI1 Missense_Mutation p.R208P 0.25 deleterious(0) probably_damaging(0.998) TCGA-Y8-A896-01 7 81331961 81331961 C T HGF Missense_Mutation p.R708Q 0.45 tolerated(0.05) probably_damaging(0.999) TCGA-Y8-A896-01 7 98576479 98576479 C T TRRAP Silent p.C2855C 0.18 TCGA-Y8-A896-01 8 124799974 124799974 T A FAM91A1 Missense_Mutation p.L421H 0.34 deleterious(0) probably_damaging(0.999) TCGA-Y8-A896-01 8 132051979 132051979 A G ADCY8 Silent p.L201L 0.17 TCGA-Y8-A896-01 8 135596131 135596131 T C ZFAT Missense_Mutation p.K944R 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-Y8-A896-01 8 26238358 26238358 A T BNIP3L 5'Flank 0.20 TCGA-Y8-A896-01 8 73921213 73921213 C G TERF1 Missense_Mutation p.T31R 0.20 tolerated_low_confidence(0.19) benign(0.016) TCGA-Y8-A896-01 8 8654999 8654999 C G MFHAS1 Missense_Mutation p.E1001Q 0.21 tolerated(0.17) benign(0.116) TCGA-Y8-A896-01 9 130480052 130480052 G A TTC16 Splice_Site p.X142_splice 0.47 TCGA-Y8-A896-01 9 131862199 131862199 G A CRAT Missense_Mutation p.A344V 0.06 deleterious(0.01) probably_damaging(0.952) TCGA-Y8-A896-01 9 136249679 136249679 G A C9orf96 Missense_Mutation p.E72K 0.38 tolerated(0.38) benign(0.012) TCGA-Y8-A896-01 9 140115231 140115231 G A RNF208 Missense_Mutation p.T145I 0.38 tolerated(0.66) possibly_damaging(0.736) TCGA-Y8-A896-01 9 14722265 14722265 G C CER1 Missense_Mutation p.H136D 0.40 deleterious(0.02) possibly_damaging(0.825) TCGA-Y8-A896-01 9 19372144 19372144 G A DENND4C Silent p.R1901R 0.28 TCGA-Y8-A896-01 X 62570937 62570938 - TTA SPIN4 5'UTR 0.45 TCGA-Y8-A896-01 X 70756180 70756180 A C OGT Missense_Mutation p.I64L 0.58 tolerated(0.12) benign(0.003) TCGA-Y8-A897-01 10 17202341 17202341 C A TRDMT1 Missense_Mutation p.G141V 0.64 deleterious(0) probably_damaging(0.95) TCGA-Y8-A897-01 10 89624274 89624274 T - PTEN Frame_Shift_Del p.Q17Kfs*7 0.35 TCGA-Y8-A897-01 11 100226989 100226989 T G CNTN5 3'UTR 0.33 TCGA-Y8-A897-01 11 4661150 4661150 C A OR51D1 Missense_Mutation p.L44M 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-Y8-A897-01 11 47373013 47373013 T C MYBPC3 Silent p.A23A 0.15 TCGA-Y8-A897-01 11 47861834 47861834 A T NUP160 Intron 0.37 TCGA-Y8-A897-01 11 5080608 5080608 G A OR52E2 Missense_Mutation p.L84F 0.31 deleterious(0) probably_damaging(0.972) TCGA-Y8-A897-01 11 5080609 5080609 C T OR52E2 Missense_Mutation p.M83I 0.31 deleterious(0.02) benign(0.123) TCGA-Y8-A897-01 11 88300498 88300498 A T GRM5 Missense_Mutation p.W785R 0.31 deleterious(0) probably_damaging(0.995) TCGA-Y8-A897-01 11 95826314 95826314 C G MAML2 Missense_Mutation p.G294A 0.36 possibly_damaging(0.874) TCGA-Y8-A897-01 11 95826315 95826315 C A MAML2 Nonsense_Mutation p.G294* 0.34 TCGA-Y8-A897-01 12 103310984 103310984 C T PAH 5'UTR 0.28 TCGA-Y8-A897-01 12 124236887 124236887 C T ATP6V0A2 Nonsense_Mutation p.Q705* 0.33 TCGA-Y8-A897-01 12 2904253 2904253 A G FKBP4 5'UTR 0.22 TCGA-Y8-A897-01 12 54801981 54801981 A T ITGA5 Missense_Mutation p.S244T 0.43 tolerated(0.49) benign(0.101) TCGA-Y8-A897-01 12 56992544 56992544 G A BAZ2A Missense_Mutation p.A1859V 0.28 deleterious(0) possibly_damaging(0.505) TCGA-Y8-A897-01 12 7639103 7639103 A G CD163 Missense_Mutation p.I817T 0.47 deleterious(0.04) possibly_damaging(0.698) TCGA-Y8-A897-01 13 21715051 21715051 C T SAP18 Silent p.F52F 0.26 TCGA-Y8-A897-01 13 37271231 37271231 C T SERTM1 3'UTR 0.21 TCGA-Y8-A897-01 14 104641420 104641420 C - KIF26A Frame_Shift_Del p.D767Tfs*55 0.25 TCGA-Y8-A897-01 14 31637663 31637663 G A HECTD1 Missense_Mutation p.P488L 0.38 deleterious(0.03) benign(0.344) TCGA-Y8-A897-01 14 57857993 57857993 G C NAA30 Silent p.L106L 0.30 TCGA-Y8-A897-01 14 73442299 73442299 T C ZFYVE1 Missense_Mutation p.Q589R 0.34 tolerated(0.07) benign(0.188) TCGA-Y8-A897-01 14 80669239 80669239 C T DIO2 Silent p.P241P 0.37 TCGA-Y8-A897-01 14 92413703 92413703 G C FBLN5 5'UTR 0.38 TCGA-Y8-A897-01 15 41063134 41063134 C T C15orf62 Silent p.L147L 0.30 TCGA-Y8-A897-01 16 10031887 10031887 G A GRIN2A Silent p.Y312Y 0.53 TCGA-Y8-A897-01 16 1129708 1129708 C T SSTR5 Silent p.P280P 0.47 TCGA-Y8-A897-01 16 2134694 2134694 A G TSC2 Missense_Mutation p.K1491E 0.53 tolerated(0.2) probably_damaging(0.995) TCGA-Y8-A897-01 16 22441134 22441134 A C RRN3P3 RNA 0.36 TCGA-Y8-A897-01 16 25703892 25703892 C A HS3ST4 Missense_Mutation p.L52I 0.10 tolerated_low_confidence(0.14) probably_damaging(0.978) TCGA-Y8-A897-01 16 70211315 70211315 G T CLEC18C Nonsense_Mutation p.E130* 0.18 TCGA-Y8-A897-01 16 75662551 75662551 C T KARS Silent p.L565L 0.54 TCGA-Y8-A897-01 17 2888281 2888281 C A RAP1GAP2 Missense_Mutation p.S245Y 0.31 deleterious(0) probably_damaging(0.978) TCGA-Y8-A897-01 17 73916469 73916469 G C FBF1 Missense_Mutation p.S557R 0.30 deleterious(0.04) benign(0.124) TCGA-Y8-A897-01 17 76087521 76087521 C G TNRC6C Missense_Mutation p.A1265G 0.37 tolerated(0.16) benign(0.393) TCGA-Y8-A897-01 17 76802272 76802272 C T USP36 Missense_Mutation p.V728I 0.26 tolerated(0.22) benign(0.08) TCGA-Y8-A897-01 18 43503240 43503240 C T EPG5 Missense_Mutation p.M944I 0.31 tolerated(1) benign(0.004) TCGA-Y8-A897-01 18 65179563 65179563 A G DSEL Silent p.H771H 0.38 TCGA-Y8-A897-01 18 72186228 72186228 C T CNDP2 Missense_Mutation p.P419S 0.29 deleterious(0) probably_damaging(0.987) TCGA-Y8-A897-01 18 7774145 7774145 A C PTPRM Splice_Site p.X25_splice 0.31 TCGA-Y8-A897-01 19 18649232 18649232 A G FKBP8 Missense_Mutation p.I189T 0.39 deleterious(0) probably_damaging(0.992) TCGA-Y8-A897-01 19 44892064 44892064 A - ZNF285 Frame_Shift_Del p.S115Lfs*11 0.25 TCGA-Y8-A897-01 19 49000945 49000945 G A LMTK3 Silent p.P1156P 0.56 TCGA-Y8-A897-01 19 56089358 56089358 T G ZNF579 Missense_Mutation p.S550R 0.23 deleterious_low_confidence(0) benign(0.207) TCGA-Y8-A897-01 1 118420604 118420614 TGAGGGAGAAC - GDAP2 Intron 0.34 TCGA-Y8-A897-01 1 156878561 156878561 C T PEAR1 Silent p.C410C 0.22 TCGA-Y8-A897-01 1 16073367 16073367 C T TMEM82 Nonsense_Mutation p.Q255* 0.21 TCGA-Y8-A897-01 1 172543034 172543034 T A SUCO Missense_Mutation p.F351L 0.24 deleterious(0.02) possibly_damaging(0.866) TCGA-Y8-A897-01 1 185964213 185964213 G T HMCN1 Missense_Mutation p.V1258F 0.04 probably_damaging(0.997) TCGA-Y8-A897-01 1 216495239 216495239 T A USH2A Missense_Mutation p.T544S 0.36 probably_damaging(0.991) TCGA-Y8-A897-01 1 220440543 220440543 T A RAB3GAP2 Intron 0.33 TCGA-Y8-A897-01 1 229631660 229631660 T A NUP133 Missense_Mutation p.E318D 0.39 tolerated(0.14) benign(0.039) TCGA-Y8-A897-01 1 229631662 229631662 C - NUP133 Frame_Shift_Del p.E318Kfs*28 0.41 TCGA-Y8-A897-01 1 26358007 26358007 C - EXTL1 Frame_Shift_Del p.P432Lfs*2 0.26 TCGA-Y8-A897-01 1 46034873 46034873 A G AKR1A1 Missense_Mutation p.N295S 0.34 deleterious(0.01) benign(0.014) TCGA-Y8-A897-01 20 3052889 3052889 G A OXT Missense_Mutation p.G96D 0.31 deleterious(0) probably_damaging(0.999) TCGA-Y8-A897-01 20 62199985 62199985 C T HELZ2 Missense_Mutation p.D486N 0.30 deleterious(0) probably_damaging(0.998) TCGA-Y8-A897-01 22 44287719 44287719 G T PNPLA5 Missense_Mutation p.F14L 0.05 deleterious(0) probably_damaging(0.999) TCGA-Y8-A897-01 22 46449700 46449700 G A C22orf26 Missense_Mutation p.R92W 0.44 tolerated_low_confidence(0.06) possibly_damaging(0.835) TCGA-Y8-A897-01 2 157407170 157407170 G A GPD2 Missense_Mutation p.D295N 0.29 deleterious(0) probably_damaging(0.999) TCGA-Y8-A897-01 2 201173693 201173693 T C SPATS2L Intron 0.32 TCGA-Y8-A897-01 2 220081117 220081117 C G ABCB6 Missense_Mutation p.K313N 0.30 deleterious(0.02) probably_damaging(0.979) TCGA-Y8-A897-01 2 233274646 233274646 G A ALPPL2 3'UTR 0.30 TCGA-Y8-A897-01 2 238483293 238483293 A C RAB17 3'UTR 0.30 TCGA-Y8-A897-01 2 241689964 241689964 C T KIF1A Silent p.R953R 0.34 TCGA-Y8-A897-01 2 44549877 44549877 T C PREPL Silent p.T671T 0.36 TCGA-Y8-A897-01 2 60983493 60983493 G C PAPOLG 5'UTR 0.44 TCGA-Y8-A897-01 2 88991191 88991191 A C RPIA 5'UTR 0.38 TCGA-Y8-A897-01 2 88991192 88991192 G C RPIA 5'UTR 0.38 TCGA-Y8-A897-01 3 169496760 169496761 - G MYNN Frame_Shift_Ins p.V158Gfs*11 0.21 TCGA-Y8-A897-01 3 45989587 45989587 A G CXCR6 3'Flank 0.31 TCGA-Y8-A897-01 3 50103677 50103677 T G RBM6 Silent p.P895P 0.33 TCGA-Y8-A897-01 4 89361324 89361324 C A HERC6 Missense_Mutation p.Q922K 0.33 tolerated(0.09) benign(0.113) TCGA-Y8-A897-01 5 79025276 79025276 A C CMYA5 Missense_Mutation p.K230Q 0.32 possibly_damaging(0.788) TCGA-Y8-A897-01 5 90073763 90073763 T G GPR98 Missense_Mutation p.F4190C 0.43 benign(0.039) TCGA-Y8-A897-01 5 94987932 94987932 A G RFESD 5'UTR 0.42 TCGA-Y8-A897-01 6 130763053 130763053 A - TMEM200A 3'UTR 0.22 TCGA-Y8-A897-01 6 158504535 158504535 G A SYNJ2 Silent p.R980R 0.34 TCGA-Y8-A897-01 6 30071167 30071167 C T TRIM31 3'UTR 0.45 TCGA-Y8-A897-01 6 32811790 32811790 G C PSMB8 5'UTR 0.34 TCGA-Y8-A897-01 6 35437970 35437970 G A RPL10A Missense_Mutation p.A109T 0.52 deleterious(0.04) benign(0.235) TCGA-Y8-A897-01 6 43272567 43272567 A G SLC22A7 3'UTR 0.36 TCGA-Y8-A897-01 6 43305308 43305308 G A ZNF318 Missense_Mutation p.S2143F 0.36 benign(0.022) TCGA-Y8-A897-01 6 44392211 44392211 A G CDC5L Missense_Mutation p.K487R 0.34 tolerated(0.26) benign(0.072) TCGA-Y8-A897-01 6 74519841 74519841 A G CD109 Missense_Mutation p.I1164V 0.35 tolerated(0.37) benign(0.014) TCGA-Y8-A897-01 6 7880673 7880673 G A BMP6 3'UTR 0.45 TCGA-Y8-A897-01 7 150771852 150771852 G A SLC4A2 Missense_Mutation p.V991M 0.33 tolerated(0.12) probably_damaging(0.932) TCGA-Y8-A897-01 7 208977 208977 G A FAM20C Splice_Site p.X288_splice 0.23 TCGA-Y8-A897-01 7 56169369 56169369 T A CHCHD2 3'UTR 0.22 TCGA-Y8-A897-01 7 8790911 8790911 G T NXPH1 Missense_Mutation p.V110F 0.33 tolerated(0.07) probably_damaging(0.972) TCGA-Y8-A897-01 8 12886088 12886088 T C KIAA1456 3'UTR 0.51 TCGA-Y8-A897-01 8 12886093 12886093 T C KIAA1456 3'UTR 0.45 TCGA-Y8-A897-01 8 141669756 141669756 A G PTK2 Silent p.L1003L 0.35 TCGA-Y8-A897-01 8 29952921 29952921 C G LEPROTL1 5'Flank 0.36 TCGA-Y8-A897-01 9 101798662 101798662 T C COL15A1 Missense_Mutation p.I798T 0.29 tolerated(0.2) benign(0.055) TCGA-Y8-A897-01 9 128116940 128116940 G AA GAPVD1 Frame_Shift_Ins p.A1220Nfs*49 0.27 TCGA-Y8-A897-01 9 133884789 133884789 C A LAMC3 Missense_Mutation p.P63H 0.47 deleterious(0.02) probably_damaging(0.956) TCGA-Y8-A897-01 9 134400396 134400396 C T UCK1 3'UTR 0.07 TCGA-Y8-A897-01 X 19002176 19002176 G C PHKA2 5'UTR 0.58 TCGA-Y8-A897-01 X 46541773 46541773 T C SLC9A7 Missense_Mutation p.K175E 0.47 deleterious(0) benign(0.101) TCGA-Y8-A897-01 X 53350189 53350189 C T IQSEC2 Missense_Mutation p.E45K 0.41 deleterious_low_confidence(0) possibly_damaging(0.81) TCGA-Y8-A897-01 X 8763195 8763195 C T FAM9A Missense_Mutation p.G252E 0.23 tolerated_low_confidence(1) unknown(0) TCGA-Y8-A898-01 10 120791219 120791219 A - NANOS1 3'UTR 0.16 TCGA-Y8-A898-01 10 26385347 26385347 G C MYO3A Missense_Mutation p.A534P 0.26 deleterious(0.02) probably_damaging(0.932) TCGA-Y8-A898-01 10 50531725 50531725 C G C10orf71 Missense_Mutation p.P379A 0.29 tolerated(0.64) benign(0.012) TCGA-Y8-A898-01 11 103128412 103128412 A G DYNC2H1 Missense_Mutation p.N3520D 0.21 possibly_damaging(0.618) TCGA-Y8-A898-01 11 116717228 116717228 T C SIK3 Missense_Mutation p.S1226G 0.23 tolerated_low_confidence(0.96) benign(0) TCGA-Y8-A898-01 11 26582626 26582626 G T MUC15 Missense_Mutation p.R358S 0.32 deleterious(0) benign(0.048) TCGA-Y8-A898-01 11 3250044 3250044 G T MRGPRE 5'UTR 0.08 TCGA-Y8-A898-01 11 46671731 46671731 G A ATG13 Missense_Mutation p.D108N 0.29 deleterious(0.02) probably_damaging(0.988) TCGA-Y8-A898-01 11 47298344 47298344 T A MADD Missense_Mutation p.M342K 0.21 deleterious(0) probably_damaging(0.99) TCGA-Y8-A898-01 11 61079364 61079364 C T DDB1 Silent p.K723K 0.21 TCGA-Y8-A898-01 11 64557689 64557689 A G MAP4K2 Missense_Mutation p.L740P 0.31 deleterious(0) probably_damaging(0.995) TCGA-Y8-A898-01 12 113825565 113825565 C T PLBD2 Missense_Mutation p.H486Y 0.23 deleterious(0.01) possibly_damaging(0.699) TCGA-Y8-A898-01 12 55759766 55759767 - A OR6C75 Frame_Shift_Ins p.N292Kfs*2 0.19 TCGA-Y8-A898-01 14 23634614 23634614 T A SLC7A8 Missense_Mutation p.I130F 0.33 deleterious(0) probably_damaging(0.999) TCGA-Y8-A898-01 14 23634615 23634615 C T SLC7A8 Silent p.V129V 0.33 TCGA-Y8-A898-01 14 35735939 35735939 A G KIAA0391 Missense_Mutation p.N428D 0.34 tolerated(1) probably_damaging(0.953) TCGA-Y8-A898-01 14 58832872 58832872 A T ARID4A Missense_Mutation p.K1149N 0.22 deleterious(0) possibly_damaging(0.791) TCGA-Y8-A898-01 14 81662499 81662499 T C GTF2A1 Missense_Mutation p.I189V 0.33 tolerated(0.79) benign(0.247) TCGA-Y8-A898-01 14 95903278 95903278 A T SYNE3 Missense_Mutation p.F806Y 0.27 tolerated(0.42) benign(0.003) TCGA-Y8-A898-01 15 101718483 101718483 G A CHSY1 Missense_Mutation p.L507F 0.27 tolerated(0.1) benign(0.05) TCGA-Y8-A898-01 15 28437274 28437274 G C HERC2 Missense_Mutation p.R2762G 0.21 benign(0.011) TCGA-Y8-A898-01 15 44876501 44876501 T G SPG11 Missense_Mutation p.K1793Q 0.05 tolerated(0.28) benign(0.33) TCGA-Y8-A898-01 15 55652607 55652607 G C CCPG1 Missense_Mutation p.A455G 0.28 deleterious(0) probably_damaging(0.991) TCGA-Y8-A898-01 15 69238832 69238832 C T SPESP1 Missense_Mutation p.P320L 0.30 deleterious(0) probably_damaging(1) TCGA-Y8-A898-01 16 3599167 3599167 C T NLRC3 Missense_Mutation p.A906T 0.23 tolerated(0.76) benign(0.001) TCGA-Y8-A898-01 16 4650116 4650116 C G C16orf96 Missense_Mutation p.S1075C 0.16 deleterious(0) possibly_damaging(0.843) TCGA-Y8-A898-01 16 4744082 4744082 T A NUDT16L1 Missense_Mutation p.L86Q 0.45 deleterious(0.01) benign(0.282) TCGA-Y8-A898-01 16 50827563 50827572 CTGCAACACT - CYLD Frame_Shift_Del p.C820Kfs*9 0.14 TCGA-Y8-A898-01 16 684782 684782 C - C16orf13 Frame_Shift_Del p.A146Lfs*37 0.16 TCGA-Y8-A898-01 16 69988435 69988435 G A CLEC18A Missense_Mutation p.G139R 0.16 tolerated(0.14) possibly_damaging(0.814) TCGA-Y8-A898-01 16 69988436 69988436 G A CLEC18A Missense_Mutation p.G139E 0.16 tolerated(0.08) possibly_damaging(0.673) TCGA-Y8-A898-01 16 70977738 70977738 G T HYDIN Missense_Mutation p.Q2216K 0.35 benign(0.11) TCGA-Y8-A898-01 16 89715757 89715757 A G CHMP1A Splice_Site p.X84_splice 0.28 TCGA-Y8-A898-01 17 1629728 1629728 T - WDR81 Frame_Shift_Del p.P493Rfs*33 0.30 TCGA-Y8-A898-01 17 31258638 31258638 A G TMEM98 Missense_Mutation p.Y31C 0.46 deleterious(0.01) possibly_damaging(0.759) TCGA-Y8-A898-01 17 42265284 42265284 T C TMUB2 Intron 0.17 TCGA-Y8-A898-01 17 57917269 57917269 A G VMP1 Silent p.K406K 0.09 TCGA-Y8-A898-01 18 321780 321780 G C COLEC12 Missense_Mutation p.N697K 0.28 deleterious(0) benign(0.264) TCGA-Y8-A898-01 19 40030283 40030283 A T EID2 Missense_Mutation p.L146H 0.35 deleterious(0) probably_damaging(0.938) TCGA-Y8-A898-01 19 45293332 45293332 G A CBLC Missense_Mutation p.R330H 0.06 tolerated(1) benign(0.001) TCGA-Y8-A898-01 19 51857559 51857559 G A ETFB Nonsense_Mutation p.R112* 0.22 TCGA-Y8-A898-01 19 52568431 52568431 C T ZNF841 Missense_Mutation p.E902K 0.30 tolerated(0.06) benign(0.354) TCGA-Y8-A898-01 1 100214136 100214149 CTGATCTCCTGGCC - FRRS1 Frame_Shift_Del p.R59Nfs*2 0.15 TCGA-Y8-A898-01 1 246811232 246811232 C G CNST Missense_Mutation p.Q577E 0.28 tolerated(1) possibly_damaging(0.547) TCGA-Y8-A898-01 1 26488137 26488137 G A FAM110D Missense_Mutation p.A119T 0.08 tolerated(0.33) benign(0.001) TCGA-Y8-A898-01 1 28290159 28290159 G C XKR8 Missense_Mutation p.V149L 0.25 tolerated(0.31) benign(0.009) TCGA-Y8-A898-01 1 43632514 43632514 G A EBNA1BP2 Silent p.G285G 0.32 TCGA-Y8-A898-01 1 43814558 43814558 G T MPL Silent p.L451L 0.31 TCGA-Y8-A898-01 1 7724719 7724719 G T CAMTA1 Silent p.L704L 0.26 TCGA-Y8-A898-01 1 89418774 89418774 G T CCBL2 Missense_Mutation p.T309K 0.22 deleterious(0.02) possibly_damaging(0.524) TCGA-Y8-A898-01 20 51871518 51871519 - GATG TSHZ2 Frame_Shift_Ins p.S510Wfs*44 0.20 TCGA-Y8-A898-01 20 60904037 60904037 G A LAMA5 Missense_Mutation p.P1437L 0.20 probably_damaging(0.986) TCGA-Y8-A898-01 22 18347671 18347671 T A MICAL3 Missense_Mutation p.T867S 0.30 benign(0.005) TCGA-Y8-A898-01 22 26351226 26351226 C T MYO18B Missense_Mutation p.R2018W 0.25 deleterious(0) probably_damaging(0.98) TCGA-Y8-A898-01 22 41545134 41545134 A - EP300 Frame_Shift_Del p.N779Ifs*25 0.23 TCGA-Y8-A898-01 2 107040779 107040779 T G RGPD3 Missense_Mutation p.K1215T 0.41 deleterious(0) possibly_damaging(0.874) TCGA-Y8-A898-01 2 114513109 114513109 G T SLC35F5 Missense_Mutation p.S18Y 0.33 deleterious_low_confidence(0.01) benign(0.015) TCGA-Y8-A898-01 2 173335733 173335733 T C ITGA6 Silent p.T225T 0.28 TCGA-Y8-A898-01 2 202900385 202900386 CT - FZD7 Frame_Shift_Del p.F340Hfs*225 0.11 TCGA-Y8-A898-01 2 242312532 242312532 A G FARP2 Missense_Mutation p.I4V 0.25 tolerated_low_confidence(0.07) benign(0.234) TCGA-Y8-A898-01 2 89567930 89567930 T - IGKV1-33 Frame_Shift_Del p.Q60Rfs*10 0.27 TCGA-Y8-A898-01 2 9668056 9668056 T A ADAM17 Nonsense_Mutation p.K160* 0.28 TCGA-Y8-A898-01 3 107508715 107508715 C T BBX Missense_Mutation p.P762L 0.22 tolerated(1) probably_damaging(0.998) TCGA-Y8-A898-01 3 130159453 130159453 T C COL6A5 Missense_Mutation p.Y2091H 0.25 tolerated(1) benign(0) TCGA-Y8-A898-01 3 184714225 184714225 T A VPS8 Missense_Mutation p.C1258S 0.39 deleterious(0) probably_damaging(1) TCGA-Y8-A898-01 3 48461649 48461649 T A PLXNB1 Silent p.P682P 0.38 TCGA-Y8-A898-01 3 52570837 52570837 C A SMIM4 Silent p.I22I 0.29 TCGA-Y8-A898-01 4 106600596 106600596 C A ARHGEF38 3'UTR 0.31 TCGA-Y8-A898-01 4 154478175 154478175 G T KIAA0922 Nonsense_Mutation p.G164* 0.39 TCGA-Y8-A898-01 4 169842683 169842683 A G PALLD Splice_Site p.X951_splice 0.31 TCGA-Y8-A898-01 4 39218827 39218827 T C WDR19 Silent p.A441A 0.30 TCGA-Y8-A898-01 4 74486079 74486079 T A RASSF6 Intron 0.26 TCGA-Y8-A898-01 4 85636511 85636511 C T WDFY3 Missense_Mutation p.G2634E 0.27 tolerated(0.14) benign(0.007) TCGA-Y8-A898-01 5 118484771 118484771 T C DMXL1 Silent p.C1083C 0.30 TCGA-Y8-A898-01 5 138145868 138145868 A C CTNNA1 Missense_Mutation p.Y148S 0.26 tolerated(0.28) benign(0.025) TCGA-Y8-A898-01 5 138145869 138145869 C T CTNNA1 Silent p.Y148Y 0.27 TCGA-Y8-A898-01 5 176734287 176734287 A G MXD3 3'UTR 0.20 TCGA-Y8-A898-01 6 138615186 138615194 ACCAGCTGA CCCAGC KIAA1244 In_Frame_Del p.Y1142_K1145delinsSQQ 0.21 TCGA-Y8-A898-01 6 159653341 159653341 G A FNDC1 Silent p.K599K 0.47 TCGA-Y8-A898-01 6 166911995 166911995 C T RPS6KA2 Splice_Site p.X257_splice 0.23 TCGA-Y8-A898-01 6 31930543 31930543 T G SKIV2L Missense_Mutation p.F422V 0.23 deleterious(0) probably_damaging(1) TCGA-Y8-A898-01 6 32783066 32783067 - C HLA-DOB Frame_Shift_Ins p.A39Gfs*2 0.24 TCGA-Y8-A898-01 7 130021580 130021594 ATGAGACCATGATCG - CPA1 Nonsense_Mutation p.Y86_E91delins* 0.14 TCGA-Y8-A898-01 7 44116188 44116188 T A POLM Missense_Mutation p.D252V 0.43 deleterious(0) possibly_damaging(0.719) TCGA-Y8-A898-01 7 53104260 53104260 C T POM121L12 3'UTR 0.23 TCGA-Y8-A898-01 7 74212092 74212092 T A GTF2IRD2 Missense_Mutation p.T587S 0.02 tolerated(0.24) probably_damaging(0.993) TCGA-Y8-A898-01 7 77764393 77764393 C A MAGI2 Silent p.V992V 0.19 TCGA-Y8-A898-01 8 101163593 101163593 C G POLR2K Missense_Mutation p.Q4E 0.26 tolerated(0.17) benign(0) TCGA-Y8-A898-01 8 11189416 11189416 C T SLC35G5 Silent p.F267F 0.05 TCGA-Y8-A898-01 8 125463695 125463695 G T TRMT12 Missense_Mutation p.R176L 0.40 deleterious(0.04) possibly_damaging(0.462) TCGA-Y8-A898-01 8 39044451 39044451 G C ADAM32 Missense_Mutation p.E313D 0.22 tolerated(0.06) benign(0.302) TCGA-Y8-A898-01 8 63659504 63659504 T A NKAIN3 Missense_Mutation p.M96K 0.30 deleterious(0) possibly_damaging(0.646) TCGA-Y8-A898-01 8 67955532 67955532 G T COPS5 Missense_Mutation p.A314D 0.20 tolerated(0.3) benign(0.09) TCGA-Y8-A898-01 9 139100813 139100813 C A QSOX2 Missense_Mutation p.A620S 0.32 tolerated(0.76) benign(0.004) TCGA-Y8-A898-01 9 26999703 26999703 T C LRRC19 Splice_Site 0.29 TCGA-Y8-A8RY-01 10 135012281 135012281 G A KNDC1 Missense_Mutation p.G757S 0.26 tolerated(0.34) benign(0.333) TCGA-Y8-A8RY-01 10 21805720 21805720 A G SKIDA1 Silent p.H344H 0.11 TCGA-Y8-A8RY-01 10 5922267 5922267 G A ANKRD16 Nonsense_Mutation p.R308* 0.46 TCGA-Y8-A8RY-01 11 108213973 108213973 G A ATM Missense_Mutation p.G2765S 0.06 deleterious(0) probably_damaging(1) TCGA-Y8-A8RY-01 11 111933142 111933142 T A DLAT Silent p.A609A 0.21 TCGA-Y8-A8RY-01 11 117789218 117789218 C T TMPRSS13 Silent p.V119V 0.44 TCGA-Y8-A8RY-01 11 118533851 118533851 G T TREH Missense_Mutation p.P82H 0.45 deleterious(0) probably_damaging(0.989) TCGA-Y8-A8RY-01 11 18382179 18382179 T C GTF2H1 Silent p.S495S 0.40 TCGA-Y8-A8RY-01 11 49805567 49805567 G A RP11-707M1.1 RNA 0.40 TCGA-Y8-A8RY-01 11 61490356 61490356 C T DAGLA Silent p.Y111Y 0.40 TCGA-Y8-A8RY-01 11 64807516 64807516 C T SNX15 3'UTR 0.45 TCGA-Y8-A8RY-01 11 71941503 71941503 C A INPPL1 Silent p.V396V 0.44 TCGA-Y8-A8RY-01 11 72700036 72700036 A G FCHSD2 Missense_Mutation p.V165A 0.40 tolerated(1) benign(0.043) TCGA-Y8-A8RY-01 11 77412208 77412208 G T RSF1 Missense_Mutation p.S689Y 0.41 deleterious(0) possibly_damaging(0.526) TCGA-Y8-A8RY-01 12 3149701 3149704 GGGA - TEAD4 3'UTR 0.34 TCGA-Y8-A8RY-01 12 39695383 39695383 G C KIF21A Silent p.V1610V 0.51 TCGA-Y8-A8RY-01 12 48181543 48181543 C G HDAC7 Missense_Mutation p.G802A 0.50 deleterious(0) probably_damaging(0.997) TCGA-Y8-A8RY-01 12 72080387 72080387 G - TMEM19 5'UTR 0.40 TCGA-Y8-A8RY-01 13 111082947 111082947 G A COL4A2 Missense_Mutation p.G214E 0.44 probably_damaging(1) TCGA-Y8-A8RY-01 13 41936177 41936177 C T NAA16 Missense_Mutation p.S474F 0.35 deleterious(0) probably_damaging(0.961) TCGA-Y8-A8RY-01 13 95121020 95121020 G A DCT Missense_Mutation p.S192F 0.39 deleterious(0) probably_damaging(1) TCGA-Y8-A8RY-01 14 56746403 56746403 T C PELI2 Missense_Mutation p.C73R 0.36 deleterious(0.02) benign(0.068) TCGA-Y8-A8RY-01 14 71109128 71109128 C T TTC9 Silent p.P94P 0.44 TCGA-Y8-A8RY-01 14 77872299 77872299 C A NOXRED1 Missense_Mutation p.D288Y 0.33 deleterious(0.05) probably_damaging(0.932) TCGA-Y8-A8RY-01 15 40226434 40226434 A G EIF2AK4 Missense_Mutation p.D13G 0.20 tolerated_low_confidence(0.39) unknown(0) TCGA-Y8-A8RY-01 15 44028798 44028798 A T RNU6-354P 5'Flank 0.44 TCGA-Y8-A8RY-01 15 48780565 48780565 C T FBN1 Missense_Mutation p.D1070N 0.29 probably_damaging(0.989) TCGA-Y8-A8RY-01 15 49031304 49031304 G A CEP152 Silent p.N1425N 0.39 TCGA-Y8-A8RY-01 15 86790909 86790909 C A AGBL1 Missense_Mutation p.N132K 0.05 deleterious(0) possibly_damaging(0.833) TCGA-Y8-A8RY-01 16 28975219 28975231 TTGGGGAGAATGA - NFATC2IP 3'UTR 0.19 TCGA-Y8-A8RY-01 16 30616527 30616527 G T ZNF689 Silent p.S187S 0.31 TCGA-Y8-A8RY-01 16 4674863 4674864 TC - MGRN1 5'UTR 0.30 TCGA-Y8-A8RY-01 17 10404987 10404987 A T MYH1 Missense_Mutation p.M1091K 0.60 deleterious(0.02) benign(0.086) TCGA-Y8-A8RY-01 17 18429054 18429058 CCGTG - FAM106A 3'UTR 0.21 TCGA-Y8-A8RY-01 17 27251285 27251285 A T PHF12 Missense_Mutation p.N119K 0.32 deleterious(0) possibly_damaging(0.507) TCGA-Y8-A8RY-01 17 27251300 27251300 C T PHF12 Silent p.E114E 0.23 TCGA-Y8-A8RY-01 17 41341718 41341718 T C NBR1 Silent p.P198P 0.18 TCGA-Y8-A8RY-01 17 42335164 42335164 G A SLC4A1 Missense_Mutation p.R432W 0.63 deleterious(0.02) benign(0.415) TCGA-Y8-A8RY-01 17 7004800 7004800 C A ASGR2 3'UTR 0.40 TCGA-Y8-A8RY-01 18 12884193 12884193 G A PTPN2 5'UTR 0.33 TCGA-Y8-A8RY-01 18 3272961 3272961 T - MYL12B Frame_Shift_Del p.V22Gfs*19 0.27 TCGA-Y8-A8RY-01 18 57103099 57103099 T A CCBE1 3'UTR 0.40 TCGA-Y8-A8RY-01 19 58863607 58863607 C G A1BG Intron 0.17 TCGA-Y8-A8RY-01 19 7806377 7806377 T A CD209 3'UTR 0.11 TCGA-Y8-A8RY-01 1 150239509 150239509 A T APH1A Missense_Mutation p.L192Q 0.36 tolerated(0.12) possibly_damaging(0.77) TCGA-Y8-A8RY-01 1 156261269 156261269 G C TMEM79 Missense_Mutation p.W355C 0.36 deleterious(0.01) possibly_damaging(0.57) TCGA-Y8-A8RY-01 1 167343522 167343522 C T POU2F1 Nonsense_Mutation p.Q194* 0.41 TCGA-Y8-A8RY-01 1 180148011 180148011 G C QSOX1 Missense_Mutation p.G200R 0.33 deleterious(0) probably_damaging(1) TCGA-Y8-A8RY-01 1 205290859 205290859 A T NUAK2 5'UTR 0.31 TCGA-Y8-A8RY-01 1 207225615 207225615 C T YOD1 5'Flank 0.10 TCGA-Y8-A8RY-01 1 32936383 32936393 TCATTCACTAT - ZBTB8B Frame_Shift_Del p.L53Hfs*8 0.28 TCGA-Y8-A8RY-01 1 36553152 36553152 A T TEKT2 Missense_Mutation p.Y323F 0.39 tolerated(0.37) benign(0.03) TCGA-Y8-A8RY-01 1 42875853 42875853 C T RIMKLA Missense_Mutation p.S227F 0.30 deleterious(0.05) benign(0.098) TCGA-Y8-A8RY-01 1 46501468 46501468 T A MAST2 Missense_Mutation p.S1709R 0.40 deleterious_low_confidence(0.03) benign(0.13) TCGA-Y8-A8RY-01 1 55060319 55060319 G - ACOT11 Frame_Shift_Del p.A188Qfs*77 0.22 TCGA-Y8-A8RY-01 1 64125282 64125282 T - PGM1 Frame_Shift_Del p.I560Mfs*3 0.19 TCGA-Y8-A8RY-01 20 29891079 29891079 T C DEFB116 Missense_Mutation p.K82R 0.36 tolerated(0.27) benign(0.018) TCGA-Y8-A8RY-01 20 29891080 29891080 T C DEFB116 Missense_Mutation p.K82E 0.38 tolerated(0.08) benign(0.03) TCGA-Y8-A8RY-01 20 32199106 32199106 G C CBFA2T2 Missense_Mutation p.G138R 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-Y8-A8RY-01 22 32021976 32021976 C T PISD 5'UTR 0.36 TCGA-Y8-A8RY-01 2 148677844 148677844 T A ACVR2A Silent p.A336A 0.32 TCGA-Y8-A8RY-01 2 215820066 215820067 TC - ABCA12 Frame_Shift_Del p.W2084Cfs*10 0.26 TCGA-Y8-A8RY-01 2 219268024 219268024 T A CTDSP1 Missense_Mutation p.C181S 0.45 deleterious(0) probably_damaging(1) TCGA-Y8-A8RY-01 2 29217656 29217656 C A FAM179A 5'UTR 0.37 TCGA-Y8-A8RY-01 2 74802619 74802619 C T M1AP Nonsense_Mutation p.W340* 0.36 TCGA-Y8-A8RY-01 3 130120011 130120011 G - COL6A5 Frame_Shift_Del p.Q1376Hfs*33 0.27 TCGA-Y8-A8RY-01 3 47038846 47038846 C T NBEAL2 Missense_Mutation p.T916M 0.50 tolerated(0.07) possibly_damaging(0.534) TCGA-Y8-A8RY-01 4 109861784 109861784 C G COL25A1 Missense_Mutation p.G195R 0.41 deleterious(0) unknown(0) TCGA-Y8-A8RY-01 4 123333812 123333812 T - ADAD1 Frame_Shift_Del p.Y367Ifs*2 0.32 TCGA-Y8-A8RY-01 4 13616300 13616300 T C BOD1L1 Missense_Mutation p.R232G 0.05 possibly_damaging(0.804) TCGA-Y8-A8RY-01 4 183674665 183674665 G A TENM3 Missense_Mutation p.D1309N 0.37 tolerated(0.2) benign(0) TCGA-Y8-A8RY-01 5 132160915 132160915 G T SHROOM1 Missense_Mutation p.S306R 0.29 deleterious(0.04) benign(0.065) TCGA-Y8-A8RY-01 5 138856029 138856029 A C TMEM173 Missense_Mutation p.D319E 0.20 tolerated(1) benign(0.004) TCGA-Y8-A8RY-01 5 141019939 141019939 C A FCHSD1 3'UTR 0.31 TCGA-Y8-A8RY-01 5 176523128 176523128 T C FGFR4 Missense_Mutation p.F631S 0.46 deleterious(0) probably_damaging(1) TCGA-Y8-A8RY-01 5 179743359 179743359 A G GFPT2 Missense_Mutation p.F419L 0.31 tolerated(0.1) benign(0.2) TCGA-Y8-A8RY-01 5 98235232 98235232 A T CHD1 Missense_Mutation p.M346K 0.35 deleterious(0) probably_damaging(0.909) TCGA-Y8-A8RY-01 6 107390745 107390745 A G BEND3 Silent p.G550G 0.32 TCGA-Y8-A8RY-01 6 11766585 11766585 G A ADTRP Silent p.I122I 0.33 TCGA-Y8-A8RY-01 6 160679822 160679822 G A SLC22A2 5'UTR 0.30 TCGA-Y8-A8RY-01 6 29231750 29231750 G C XXbac-BPG308J9.3 RNA 0.40 TCGA-Y8-A8RY-01 6 64404652 64404653 - AGGT PHF3 Frame_Shift_Ins 0.23 TCGA-Y8-A8RY-01 7 102279605 102279605 T G UPK3BL Missense_Mutation p.E176A 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-Y8-A8RY-01 7 140507811 140507811 T C BRAF Silent p.E220E 0.22 TCGA-Y8-A8RY-01 7 150324733 150324733 G C GIMAP6 3'UTR 0.26 TCGA-Y8-A8RY-01 7 151164036 151164042 TTGGACA AGACTCAGAGTTAACAG RHEB 3'UTR 0.60 TCGA-Y8-A8RY-01 7 21940821 21940821 G A DNAH11 Silent p.E4507E 0.18 TCGA-Y8-A8RY-01 7 26240336 26240336 C T HNRNPA2B1 5'UTR 0.75 TCGA-Y8-A8RY-01 7 2686778 2686778 C - TTYH3 Frame_Shift_Del p.G100Afs*44 0.34 TCGA-Y8-A8RY-01 7 87465583 87465583 A G SLC25A40 Missense_Mutation p.V333A 0.61 tolerated(0.79) benign(0) TCGA-Y8-A8RY-01 7 883460 883460 T A SUN1 Intron 0.27 TCGA-Y8-A8RY-01 7 99661446 99661446 G T ZSCAN21 Missense_Mutation p.D210Y 0.64 deleterious(0.04) possibly_damaging(0.807) TCGA-Y8-A8RY-01 8 100836128 100836128 T C VPS13B Silent p.T3109T 0.43 TCGA-Y8-A8RY-01 8 29197704 29197704 G A DUSP4 Silent p.L164L 0.35 TCGA-Y8-A8RY-01 8 61193731 61193731 G C CA8 5'UTR 0.40 TCGA-Y8-A8RY-01 8 71068654 71068654 G - NCOA2 Frame_Shift_Del p.S649Lfs*9 0.32 TCGA-Y8-A8RY-01 9 139231429 139231429 G T GPSM1 Missense_Mutation p.G160C 0.46 deleterious(0) probably_damaging(1) TCGA-Y8-A8RY-01 X 100650416 100650416 T G RPL36A Missense_Mutation p.F127V 0.75 deleterious(0) probably_damaging(0.988) TCGA-Y8-A8RY-01 X 129822852 129822852 A G ENOX2 Missense_Mutation p.F109L 0.70 deleterious(0.03) probably_damaging(0.986) TCGA-Y8-A8RY-01 X 63411064 63411064 C G AMER1 Silent p.L701L 0.82 TCGA-Y8-A8RY-01 X 74742980 74742980 T C ZDHHC15 5'UTR 0.92 TCGA-Y8-A8RZ-01 10 127525098 127525098 T C BCCIP Intron 0.42 TCGA-Y8-A8RZ-01 10 48426591 48426591 C A GDF10 Silent p.V472V 0.37 TCGA-Y8-A8RZ-01 11 119042082 119042082 G T NLRX1 5'UTR 0.07 TCGA-Y8-A8RZ-01 11 55606280 55606280 G C OR5D16 Missense_Mutation p.G18A 0.32 deleterious(0.01) probably_damaging(0.956) TCGA-Y8-A8RZ-01 11 59596879 59596879 G A GIF 3'UTR 0.43 TCGA-Y8-A8RZ-01 11 62556681 62556681 A T TMEM179B Nonsense_Mutation p.R95* 0.39 TCGA-Y8-A8RZ-01 11 68154171 68154171 C T LRP5 Missense_Mutation p.P468L 0.39 deleterious(0.02) possibly_damaging(0.819) TCGA-Y8-A8RZ-01 11 68377430 68377430 C A PPP6R3 Missense_Mutation p.P843T 0.54 tolerated(1) benign(0.001) TCGA-Y8-A8RZ-01 12 125398244 125398244 T C UBC Missense_Mutation p.N25S 0.36 tolerated(0.14) benign(0.013) TCGA-Y8-A8RZ-01 12 133252404 133252404 A G POLE Silent p.A341A 0.29 TCGA-Y8-A8RZ-01 12 14929796 14929796 G A H2AFJ 3'UTR 0.38 TCGA-Y8-A8RZ-01 12 18699304 18699304 A T PIK3C2G Missense_Mutation p.K1135N 0.45 deleterious(0) possibly_damaging(0.694) TCGA-Y8-A8RZ-01 12 31633023 31633023 A G DENND5B Missense_Mutation p.L135P 0.43 deleterious(0) probably_damaging(1) TCGA-Y8-A8RZ-01 12 50025266 50025266 T C PRPF40B Missense_Mutation p.M56T 0.38 tolerated(0.42) unknown(0) TCGA-Y8-A8RZ-01 12 54964116 54964116 G C PDE1B Missense_Mutation p.R190P 0.28 deleterious(0) benign(0.123) TCGA-Y8-A8RZ-01 12 57925883 57925883 T G DCTN2 Missense_Mutation p.Q350P 0.39 deleterious(0.01) possibly_damaging(0.51) TCGA-Y8-A8RZ-01 13 51952382 51952382 A G INTS6 Missense_Mutation p.L532P 0.34 tolerated(0.18) probably_damaging(0.998) TCGA-Y8-A8RZ-01 13 96294455 96294455 G T DZIP1 5'UTR 0.45 TCGA-Y8-A8RZ-01 14 31164021 31164021 A T SCFD1 Missense_Mutation p.M429L 0.37 tolerated(0.6) benign(0.006) TCGA-Y8-A8RZ-01 15 86122543 86122543 T C AKAP13 Missense_Mutation p.L415P 0.29 tolerated(0.05) benign(0.003) TCGA-Y8-A8RZ-01 16 1505758 1505760 AGA - CLCN7 In_Frame_Del p.F318del 0.34 TCGA-Y8-A8RZ-01 16 15135529 15135529 T A NTAN1 Missense_Mutation p.E146D 0.34 tolerated(0.08) possibly_damaging(0.466) TCGA-Y8-A8RZ-01 16 29819616 29819616 T G MAZ Splice_Site p.X369_splice 0.29 TCGA-Y8-A8RZ-01 16 31724691 31724691 C A ZNF720 5'UTR 0.40 TCGA-Y8-A8RZ-01 16 57984325 57984325 C T CNGB1 Missense_Mutation p.A332T 0.42 tolerated_low_confidence(0.18) benign(0.004) TCGA-Y8-A8RZ-01 16 88964550 88964550 G A CBFA2T3 Silent p.D105D 0.08 TCGA-Y8-A8RZ-01 17 19458586 19458586 A G SLC47A1 Missense_Mutation p.N202S 0.05 deleterious(0) possibly_damaging(0.855) TCGA-Y8-A8RZ-01 17 29527522 29527522 G C NF1 Missense_Mutation p.C324S 0.35 tolerated(0.13) benign(0.002) TCGA-Y8-A8RZ-01 17 38171869 38171869 A C CSF3 Intron 0.26 TCGA-Y8-A8RZ-01 17 48738388 48738388 T A ABCC3 Missense_Mutation p.L304Q 0.40 tolerated(0.14) possibly_damaging(0.541) TCGA-Y8-A8RZ-01 17 62542409 62542409 T C SMURF2 Missense_Mutation p.T707A 0.42 tolerated(0.18) benign(0.017) TCGA-Y8-A8RZ-01 18 10471923 10471923 G C APCDD1 Silent p.R213R 0.37 TCGA-Y8-A8RZ-01 19 10945667 10945667 T C TMED1 Silent p.G136G 0.41 TCGA-Y8-A8RZ-01 19 20236172 20236172 A G CTC-260E6.2 RNA 0.26 TCGA-Y8-A8RZ-01 19 57642200 57642200 A G USP29 Silent p.K719K 0.40 TCGA-Y8-A8RZ-01 19 58772847 58772847 A C ZNF544 Missense_Mutation p.H292P 0.42 deleterious(0.05) benign(0.001) TCGA-Y8-A8RZ-01 19 8389663 8389663 C T KANK3 Missense_Mutation p.V712M 0.35 deleterious(0) possibly_damaging(0.781) TCGA-Y8-A8RZ-01 1 118454694 118454694 T C GDAP2 Missense_Mutation p.M161V 0.32 deleterious(0.03) benign(0.051) TCGA-Y8-A8RZ-01 1 151011013 151011013 T C BNIPL Silent p.D57D 0.40 TCGA-Y8-A8RZ-01 1 155238100 155238100 A G CLK2 Missense_Mutation p.C179R 0.37 deleterious(0) probably_damaging(0.92) TCGA-Y8-A8RZ-01 1 16265370 16265370 A G SPEN Missense_Mutation p.Q3621R 0.77 possibly_damaging(0.479) TCGA-Y8-A8RZ-01 1 165737981 165737981 G A TMCO1 Missense_Mutation p.T54I 0.45 tolerated_low_confidence(0.1) possibly_damaging(0.466) TCGA-Y8-A8RZ-01 1 21904154 21904154 C T ALPL 3'UTR 0.53 TCGA-Y8-A8RZ-01 1 38158699 38158699 T C CDCA8 Missense_Mutation p.Y73H 0.43 tolerated(0.09) probably_damaging(0.988) TCGA-Y8-A8RZ-01 1 43224870 43224870 A C LEPRE1 Splice_Site p.X270_splice 0.39 TCGA-Y8-A8RZ-01 1 94639617 94639617 G T ARHGAP29 Silent p.P1198P 0.38 TCGA-Y8-A8RZ-01 20 17462589 17462589 C T PCSK2 Silent p.A597A 0.44 TCGA-Y8-A8RZ-01 20 55983002 55983002 A T RBM38 3'UTR 0.38 TCGA-Y8-A8RZ-01 2 14776220 14776220 T A FAM84A 3'UTR 0.38 TCGA-Y8-A8RZ-01 2 225378239 225378239 A G CUL3 Splice_Site p.X218_splice 0.60 TCGA-Y8-A8RZ-01 2 32702603 32702603 C A BIRC6 Silent p.L2340L 0.38 TCGA-Y8-A8RZ-01 2 73143711 73143711 G T EMX1 5'Flank 0.24 TCGA-Y8-A8RZ-01 2 85533645 85533645 C T TCF7L1 Missense_Mutation p.S407L 0.41 deleterious(0.04) benign(0.372) TCGA-Y8-A8RZ-01 3 111849299 111849306 TTCTCTGT - GCSAM Frame_Shift_Del p.K30Nfs*11 0.20 TCGA-Y8-A8RZ-01 3 119325795 119325795 G C PLA1A Missense_Mutation p.G83A 0.37 tolerated(0.24) possibly_damaging(0.497) TCGA-Y8-A8RZ-01 3 138664642 138664642 G C FOXL2 Missense_Mutation p.A308G 0.53 tolerated_low_confidence(0.85) unknown(0) TCGA-Y8-A8RZ-01 3 164712075 164712075 C A SI Missense_Mutation p.G1604V 0.20 deleterious(0) probably_damaging(1) TCGA-Y8-A8RZ-01 3 51430385 51430385 C G RBM15B Missense_Mutation p.R519G 0.71 tolerated(0.07) probably_damaging(0.937) TCGA-Y8-A8RZ-01 3 52437846 52437846 C A BAP1 Missense_Mutation p.V439L 0.52 tolerated_low_confidence(0.19) benign(0.008) TCGA-Y8-A8RZ-01 3 78680444 78680444 G T ROBO1 Missense_Mutation p.H1165N 0.68 tolerated(0.17) benign(0.016) TCGA-Y8-A8RZ-01 4 123255556 123255556 T C KIAA1109 Missense_Mutation p.S3902P 0.38 probably_damaging(0.995) TCGA-Y8-A8RZ-01 4 1379721 1379721 C A UVSSA Nonsense_Mutation p.S701* 0.35 TCGA-Y8-A8RZ-01 4 184930877 184930877 C G STOX2 Missense_Mutation p.P296A 0.32 deleterious(0) probably_damaging(0.999) TCGA-Y8-A8RZ-01 4 99342409 99342409 A G RAP1GDS1 Missense_Mutation p.E436G 0.46 tolerated(0.08) possibly_damaging(0.545) TCGA-Y8-A8RZ-01 5 15500727 15500727 C T FBXL7 5'UTR 0.29 TCGA-Y8-A8RZ-01 5 32364329 32364329 C A ZFR Missense_Mutation p.S963I 0.40 deleterious(0) unknown(0) TCGA-Y8-A8RZ-01 5 39364500 39364500 A G C9 Missense_Mutation p.Y23H 0.46 tolerated(0.53) benign(0.243) TCGA-Y8-A8RZ-01 6 1390659 1390659 C G FOXF2 Missense_Mutation p.I159M 0.37 deleterious(0) possibly_damaging(0.783) TCGA-Y8-A8RZ-01 6 144806574 144806574 C T UTRN Silent p.T1247T 0.39 TCGA-Y8-A8RZ-01 6 147636834 147636834 G A STXBP5 Missense_Mutation p.R529K 0.36 tolerated(1) benign(0.002) TCGA-Y8-A8RZ-01 6 31916623 31916623 A G CFB Silent p.S853S 0.50 TCGA-Y8-A8RZ-01 6 42044861 42044861 G C TAF8 Missense_Mutation p.E268D 0.35 tolerated(0.1) benign(0.238) TCGA-Y8-A8RZ-01 6 42044862 42044862 A T TAF8 Missense_Mutation p.N269Y 0.35 deleterious(0.01) possibly_damaging(0.861) TCGA-Y8-A8RZ-01 6 73834308 73834331 TGTGAGTAAAATCGATCAACAAAT - KCNQ5 Intron 0.33 TCGA-Y8-A8RZ-01 7 123143385 123143385 G A IQUB Nonsense_Mutation p.Q189* 0.38 TCGA-Y8-A8RZ-01 7 148947628 148947628 G C ZNF212 Missense_Mutation p.E135Q 0.32 deleterious(0) probably_damaging(0.931) TCGA-Y8-A8RZ-01 7 148947629 148947629 A C ZNF212 Missense_Mutation p.E135A 0.33 deleterious(0) possibly_damaging(0.687) TCGA-Y8-A8RZ-01 7 156759786 156759786 G C NOM1 Missense_Mutation p.K766N 0.27 deleterious(0) probably_damaging(0.998) TCGA-Y8-A8RZ-01 7 36895202 36895202 A G ELMO1 Missense_Mutation p.I713T 0.37 deleterious(0) benign(0.028) TCGA-Y8-A8RZ-01 7 4051838 4051838 C A SDK1 Missense_Mutation p.H797Q 0.31 tolerated(0.95) benign(0.017) TCGA-Y8-A8RZ-01 7 56130412 56130412 A T CCT6A Missense_Mutation p.D496V 0.40 deleterious(0) probably_damaging(0.987) TCGA-Y8-A8RZ-01 7 87399955 87399955 G A RUNDC3B Missense_Mutation p.E247K 0.03 deleterious(0.04) possibly_damaging(0.536) TCGA-Y8-A8RZ-01 9 134003841 134003841 T A NUP214 Missense_Mutation p.F122I 0.41 unknown(0) TCGA-Y8-A8RZ-01 9 139400175 139400175 G T NOTCH1 Nonsense_Mutation p.C1391* 0.38 TCGA-Y8-A8RZ-01 9 35740323 35740323 G A GBA2 Missense_Mutation p.A389V 0.29 deleterious(0) probably_damaging(0.938) TCGA-Y8-A8RZ-01 9 35808792 35808794 TTA - NPR2 In_Frame_Del p.Y977del 0.40 TCGA-Y8-A8RZ-01 X 151092151 151092151 G A MAGEA4 Silent p.Q5Q 0.57 TCGA-Y8-A8S0-01 10 121602090 121602090 A T MCMBP Missense_Mutation p.S342T 0.49 tolerated(0.49) benign(0.007) TCGA-Y8-A8S0-01 10 124066782 124066782 G A BTBD16 Silent p.Q290Q 0.48 TCGA-Y8-A8S0-01 10 28824568 28824568 T A WAC Silent p.P52P 0.47 TCGA-Y8-A8S0-01 10 6155504 6155504 C G RBM17 Missense_Mutation p.T297S 0.36 deleterious(0.01) probably_damaging(0.97) TCGA-Y8-A8S0-01 10 91196029 91196029 A G SLC16A12 Missense_Mutation p.M359T 0.46 deleterious(0) benign(0.328) TCGA-Y8-A8S0-01 11 103080609 103080609 C T DYNC2H1 Missense_Mutation p.P2820L 0.45 possibly_damaging(0.549) TCGA-Y8-A8S0-01 11 60774086 60774086 C G CD6 Missense_Mutation p.S30R 0.39 tolerated(0.08) benign(0.01) TCGA-Y8-A8S0-01 11 62400193 62400193 G T GANAB Nonsense_Mutation p.Y302* 0.06 TCGA-Y8-A8S0-01 11 85376123 85376123 G A CREBZF 5'UTR 0.50 TCGA-Y8-A8S0-01 12 49176934 49176934 T G ADCY6 Missense_Mutation p.E95A 0.51 deleterious(0.05) possibly_damaging(0.601) TCGA-Y8-A8S0-01 13 110857716 110857716 C T COL4A1 Missense_Mutation p.G314D 0.04 unknown(0) TCGA-Y8-A8S0-01 14 45542589 45542589 A T FAM179B Missense_Mutation p.N1663I 0.50 deleterious(0) benign(0.382) TCGA-Y8-A8S0-01 16 67860650 67860650 G A TSNAXIP1 Missense_Mutation p.S432N 0.54 tolerated(0.4) benign(0.002) TCGA-Y8-A8S0-01 17 40275296 40275296 C T HSPB9 Missense_Mutation p.P143L 0.61 tolerated(0.16) benign(0.01) TCGA-Y8-A8S0-01 18 11886709 11886709 C T MPPE1 Intron 0.44 TCGA-Y8-A8S0-01 18 19029545 19029545 G A GREB1L Missense_Mutation p.E490K 0.59 deleterious(0) possibly_damaging(0.574) TCGA-Y8-A8S0-01 19 1059025 1059025 T A ABCA7 Missense_Mutation p.Y1802N 0.44 deleterious(0) probably_damaging(0.969) TCGA-Y8-A8S0-01 19 31039523 31039523 A G ZNF536 Silent p.A999A 0.38 TCGA-Y8-A8S0-01 19 39694529 39694529 C T SYCN Nonsense_Mutation p.W122* 0.43 TCGA-Y8-A8S0-01 19 45683819 45683819 T A BLOC1S3 3'UTR 0.43 TCGA-Y8-A8S0-01 19 45683820 45683820 G T BLOC1S3 3'UTR 0.43 TCGA-Y8-A8S0-01 19 5456739 5456739 G C ZNRF4 Missense_Mutation p.E413Q 0.44 tolerated(0.13) benign(0.043) TCGA-Y8-A8S0-01 19 56297021 56297021 C T NLRP11 Silent p.T1024T 0.03 TCGA-Y8-A8S0-01 19 59069766 59069766 C T UBE2M 5'UTR 0.20 TCGA-Y8-A8S0-01 1 152648496 152648496 C T LCE2C Missense_Mutation p.S2F 0.51 tolerated_low_confidence(1) unknown(0) TCGA-Y8-A8S0-01 1 1608242 1608242 C A SLC35E2B 5'UTR 0.62 TCGA-Y8-A8S0-01 1 161993092 161993092 C G OLFML2B Missense_Mutation p.E43D 0.22 tolerated(0.42) benign(0.007) TCGA-Y8-A8S0-01 1 202418132 202418132 C G PPP1R12B Silent p.S561S 0.36 TCGA-Y8-A8S0-01 1 210857406 210857406 C A KCNH1 Silent p.L729L 0.38 TCGA-Y8-A8S0-01 1 224444723 224444723 T C NVL Intron 0.46 TCGA-Y8-A8S0-01 20 585055 585055 A C TCF15 3'UTR 0.33 TCGA-Y8-A8S0-01 21 47545693 47545699 TTGCAGG - COL6A2 Splice_Site p.X657_splice 0.30 TCGA-Y8-A8S0-01 22 17472825 17472825 T C GAB4 Missense_Mutation p.D139G 0.58 deleterious(0) probably_damaging(0.913) TCGA-Y8-A8S0-01 2 152359933 152359934 CC A NEB Frame_Shift_Del p.G7922* 0.33 TCGA-Y8-A8S0-01 2 203242029 203242029 G T BMPR2 5'UTR 0.56 TCGA-Y8-A8S0-01 2 242077491 242077491 C T PASK Silent p.T251T 0.06 TCGA-Y8-A8S0-01 2 27556578 27556578 C T GTF3C2 Missense_Mutation p.S559N 0.06 deleterious(0.02) benign(0.276) TCGA-Y8-A8S0-01 3 131268825 131268825 G T CPNE4 Nonsense_Mutation p.S423* 0.41 TCGA-Y8-A8S0-01 3 139236515 139236515 C G RBP1 Missense_Mutation p.R183T 0.13 tolerated(0.9) benign(0.141) TCGA-Y8-A8S0-01 3 38103779 38103779 G A DLEC1 Missense_Mutation p.D265N 0.47 tolerated(0.19) benign(0.32) TCGA-Y8-A8S0-01 4 119613212 119613212 T C METTL14 Missense_Mutation p.I134T 0.38 deleterious(0) probably_damaging(0.966) TCGA-Y8-A8S0-01 4 13602062 13602062 C T BOD1L1 Silent p.L2154L 0.51 TCGA-Y8-A8S0-01 4 39233429 39233429 T G WDR19 Silent p.A665A 0.51 TCGA-Y8-A8S0-01 5 131811733 131811733 C G AC116366.6 5'Flank 0.43 TCGA-Y8-A8S0-01 5 134109546 134109546 A G DDX46 Missense_Mutation p.D203G 0.05 deleterious(0.04) probably_damaging(0.984) TCGA-Y8-A8S0-01 5 65350314 65350314 G A ERBB2IP Missense_Mutation p.M1056I 0.25 tolerated(0.47) benign(0.001) TCGA-Y8-A8S0-01 6 135360838 135360838 T C HBS1L Silent p.L101L 0.45 TCGA-Y8-A8S0-01 6 31740832 31740832 T G VWA7 Missense_Mutation p.E329A 0.18 deleterious(0) probably_damaging(0.999) TCGA-Y8-A8S0-01 8 36694438 36694438 C A KCNU1 Missense_Mutation p.S498Y 0.47 deleterious(0) probably_damaging(0.984) TCGA-Y8-A8S0-01 8 43048924 43048924 T C HGSNAT Missense_Mutation p.Y468H 0.40 tolerated(0.05) benign(0.175) TCGA-Y8-A8S0-01 8 75761353 75761353 G T PI15 Missense_Mutation p.K214N 0.47 deleterious(0) possibly_damaging(0.522) TCGA-Y8-A8S0-01 8 75761354 75761354 G A PI15 Missense_Mutation p.G215S 0.47 deleterious(0) probably_damaging(0.998) TCGA-Y8-A8S0-01 X 153207005 153207005 A G RENBP Missense_Mutation p.F291L 0.95 tolerated(0.06) benign(0.401) TCGA-Y8-A8S0-01 X 43603409 43603409 T C MAOA Silent p.P476P 0.93 TCGA-Y8-A8S1-01 10 18429642 18429642 T G CACNB2 5'UTR 0.13 TCGA-Y8-A8S1-01 11 1248326 1248326 G C MUC5B Missense_Mutation p.S176T 0.13 unknown(0) TCGA-Y8-A8S1-01 11 5530266 5530266 G T UBQLN3 Missense_Mutation p.P175T 0.14 deleterious(0.01) possibly_damaging(0.743) TCGA-Y8-A8S1-01 12 111991980 111991980 A T ATXN2 Missense_Mutation p.H270Q 0.18 probably_damaging(0.999) TCGA-Y8-A8S1-01 12 123829975 123829975 G A SBNO1 Missense_Mutation p.T127I 0.12 tolerated_low_confidence(0.05) benign(0.019) TCGA-Y8-A8S1-01 12 56755342 56755342 A G APOF Silent p.D216D 0.15 TCGA-Y8-A8S1-01 12 57490511 57490511 A G STAT6 Silent p.P796P 0.15 TCGA-Y8-A8S1-01 12 81741541 81741541 T C PPFIA2 Missense_Mutation p.Q668R 0.08 deleterious(0) probably_damaging(0.931) TCGA-Y8-A8S1-01 13 35738623 35738623 C A NBEA Missense_Mutation p.L1404I 0.09 deleterious(0) probably_damaging(0.997) TCGA-Y8-A8S1-01 14 23866283 23866283 A G MYH6 Missense_Mutation p.M686T 0.13 deleterious(0.01) possibly_damaging(0.619) TCGA-Y8-A8S1-01 14 96788562 96788562 C G ATG2B Missense_Mutation p.M922I 0.15 deleterious(0.03) possibly_damaging(0.885) TCGA-Y8-A8S1-01 15 52628738 52628738 G T MYO5A Missense_Mutation p.L1419I 0.09 tolerated(0.14) benign(0.284) TCGA-Y8-A8S1-01 15 65703412 65703412 C T IGDCC4 Missense_Mutation p.A123T 0.17 tolerated(0.14) benign(0.019) TCGA-Y8-A8S1-01 16 30900042 30900042 A C BCL7C Intron 0.21 TCGA-Y8-A8S1-01 16 88501405 88501405 C T ZNF469 Silent p.A2481A 0.12 TCGA-Y8-A8S1-01 16 88501409 88501409 C A ZNF469 Missense_Mutation p.P2483T 0.12 benign(0.283) TCGA-Y8-A8S1-01 17 26898228 26898228 T - PIGS Intron 0.12 TCGA-Y8-A8S1-01 17 37565772 37565772 T C MED1 Missense_Mutation p.Q901R 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.65) TCGA-Y8-A8S1-01 17 44248467 44248467 C A KANSL1 Missense_Mutation p.R348L 0.14 deleterious(0) probably_damaging(0.995) TCGA-Y8-A8S1-01 17 47039154 47039154 C T GIP Silent p.E95E 0.17 TCGA-Y8-A8S1-01 17 7664198 7664198 C T DNAH2 Missense_Mutation p.R976C 0.16 probably_damaging(0.983) TCGA-Y8-A8S1-01 17 79632150 79632150 G A OXLD1 3'UTR 0.10 TCGA-Y8-A8S1-01 18 22020542 22020542 G C IMPACT Silent p.S150S 0.12 TCGA-Y8-A8S1-01 18 46889546 46889546 G C DYM Missense_Mutation p.T160S 0.16 tolerated(0.08) benign(0.009) TCGA-Y8-A8S1-01 19 4332020 4332020 T G STAP2 Missense_Mutation p.E118A 0.09 deleterious(0) probably_damaging(0.945) TCGA-Y8-A8S1-01 19 50119450 50119450 C T PRR12 Missense_Mutation p.S1824F 0.08 unknown(0) TCGA-Y8-A8S1-01 19 56297223 56297223 C T NLRP11 Missense_Mutation p.G957D 0.12 tolerated(1) benign(0.001) TCGA-Y8-A8S1-01 19 6744841 6744841 T C TRIP10 Missense_Mutation p.S274P 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-Y8-A8S1-01 1 1267161 1267161 C G TAS1R3 Missense_Mutation p.P112R 0.13 deleterious(0.01) possibly_damaging(0.725) TCGA-Y8-A8S1-01 1 142620810 142620810 A T RP11-417J8.6 RNA 0.14 TCGA-Y8-A8S1-01 1 15382699 15382699 T C KAZN Missense_Mutation p.L280P 0.15 deleterious(0.01) benign(0.125) TCGA-Y8-A8S1-01 1 15545932 15545932 C G TMEM51 Missense_Mutation p.P152R 0.12 tolerated(0.6) benign(0.011) TCGA-Y8-A8S1-01 1 228584575 228584575 C T TRIM11 Intron 0.13 TCGA-Y8-A8S1-01 1 27278714 27278714 T C C1orf172 Missense_Mutation p.H53R 0.13 tolerated(1) benign(0) TCGA-Y8-A8S1-01 1 36026513 36026513 C G NCDN Missense_Mutation p.P254R 0.19 tolerated(0.56) possibly_damaging(0.51) TCGA-Y8-A8S1-01 1 44128602 44128602 T A KDM4A Missense_Mutation p.I156N 0.11 deleterious(0) probably_damaging(0.95) TCGA-Y8-A8S1-01 1 6257812 6257812 T - RPL22 Frame_Shift_Del p.K6Sfs*4 0.12 TCGA-Y8-A8S1-01 2 10192452 10192452 A T KLF11 Nonsense_Mutation p.K453* 0.15 TCGA-Y8-A8S1-01 2 10192453 10192453 A T KLF11 Missense_Mutation p.K453M 0.16 deleterious(0) probably_damaging(1) TCGA-Y8-A8S1-01 2 17888505 17888505 C G SMC6 Missense_Mutation p.D663H 0.16 deleterious(0) probably_damaging(0.995) TCGA-Y8-A8S1-01 2 243061205 243061205 C G AC093642.5 RNA 0.09 TCGA-Y8-A8S1-01 3 132075809 132075809 G A ACPP Intron 0.10 TCGA-Y8-A8S1-01 3 40528724 40528724 C T ZNF619 Silent p.F281F 0.14 TCGA-Y8-A8S1-01 3 48690465 48690465 A T CELSR3 Silent p.L1868L 0.13 TCGA-Y8-A8S1-01 3 69097304 69097307 TTCT - TMF1 Frame_Shift_Del p.K183Nfs*4 0.11 TCGA-Y8-A8S1-01 3 89498468 89498468 C T EPHA3 Missense_Mutation p.L814F 0.15 deleterious(0) possibly_damaging(0.763) TCGA-Y8-A8S1-01 3 9754468 9754468 A T CPNE9 Missense_Mutation p.K167N 0.16 deleterious(0) probably_damaging(0.966) TCGA-Y8-A8S1-01 3 97868711 97868711 G A OR5H14 Missense_Mutation p.G161E 0.13 deleterious(0.01) possibly_damaging(0.595) TCGA-Y8-A8S1-01 4 39910143 39910143 A G PDS5A Missense_Mutation p.S369P 0.14 tolerated(0.05) possibly_damaging(0.691) TCGA-Y8-A8S1-01 4 77661777 77661777 T - SHROOM3 Frame_Shift_Del p.S818Pfs*24 0.09 TCGA-Y8-A8S1-01 4 83350434 83350434 T C HNRNPDL Missense_Mutation p.K137R 0.10 tolerated(0.29) benign(0.058) TCGA-Y8-A8S1-01 5 148679111 148679111 G T AFAP1L1 Missense_Mutation p.S19I 0.05 deleterious(0) benign(0.08) TCGA-Y8-A8S1-01 5 149589205 149589219 CTGCCCGGGACCTCA GTCCC SLC6A7 3'UTR 0.14 TCGA-Y8-A8S1-01 5 75596667 75596667 T G SV2C Missense_Mutation p.F584V 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-Y8-A8S1-01 6 144724303 144724303 A T UTRN Missense_Mutation p.N42Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-Y8-A8S1-01 6 146678763 146678763 T C GRM1 Missense_Mutation p.I512T 0.15 deleterious(0.04) benign(0.412) TCGA-Y8-A8S1-01 6 29581105 29581105 C T GABBR1 Missense_Mutation p.R494H 0.14 deleterious(0.03) benign(0.025) TCGA-Y8-A8S1-01 6 33246172 33246172 A C B3GALT4 Missense_Mutation p.K326Q 0.12 tolerated(0.5) benign(0.03) TCGA-Y8-A8S1-01 6 38843576 38843576 C A DNAH8 Silent p.T2393T 0.11 TCGA-Y8-A8S1-01 6 51924822 51924822 G A PKHD1 Silent p.F379F 0.15 TCGA-Y8-A8S1-01 6 99885201 99885201 G A USP45 Silent p.G745G 0.09 TCGA-Y8-A8S1-01 7 102738803 102738803 C T ARMC10 Nonsense_Mutation p.R279* 0.04 TCGA-Y8-A8S1-01 7 128519855 128519855 G A KCP RNA 0.18 TCGA-Y8-A8S1-01 7 155473562 155473562 T A RBM33 Missense_Mutation p.V176E 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-Y8-A8S1-01 7 99631136 99631136 G T ZKSCAN1 Missense_Mutation p.K336N 0.21 tolerated(0.06) benign(0.287) TCGA-Y8-A8S1-01 8 30700777 30700777 T C TEX15 Silent p.R1919R 0.10 TCGA-Y8-A8S1-01 8 80567258 80567258 G A STMN2 Silent p.E147E 0.13 TCGA-Y8-A8S1-01 8 95502281 95502281 C T KIAA1429 Missense_Mutation p.G1724S 0.14 tolerated(0.07) probably_damaging(0.951) TCGA-Y8-A8S1-01 9 126128319 126128319 G A CRB2 Missense_Mutation p.C181Y 0.12 deleterious(0) benign(0.035) TCGA-Y8-A8S1-01 9 441400 441400 G T DOCK8 Missense_Mutation p.D1780Y 0.08 deleterious(0.03) probably_damaging(0.981) TCGA-Y8-A8S1-01 9 6328657 6328657 T C TPD52L3 Missense_Mutation p.L21P 0.14 tolerated(1) benign(0.001) TCGA-Y8-A8S1-01 9 97522034 97522054 TTTAATAAATCCCTCAAACAA - C9orf3 5'Flank 0.19 TCGA-Y8-A8S1-01 X 135827428 135827428 G T ARHGEF6 Missense_Mutation p.A138E 0.07 tolerated_low_confidence(0.53) benign(0.001)