sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-CS-4938-01 15 72608207 72608207 G A CELF6 Silent p.H108H 0.67 TCGA-CS-4938-01 17 26881093 26881093 T G PIGS 3'UTR 0.46 TCGA-CS-4938-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.81 deleterious(0) probably_damaging(1) TCGA-CS-4938-01 19 51518742 51518742 G A KLK10 Silent p.V203V 0.33 TCGA-CS-4938-01 19 6686853 6686853 G A C3 Nonsense_Mutation p.Q1184* 0.15 TCGA-CS-4938-01 1 150955565 150955565 G A ANXA9 Splice_Site 0.07 TCGA-CS-4938-01 1 159024753 159024753 A G IFI16 3'UTR 0.40 TCGA-CS-4938-01 1 84356051 84356051 T C TTLL7 Silent p.L774L 0.48 TCGA-CS-4938-01 2 1499888 1499888 G A TPO Missense_Mutation p.G712S 0.16 tolerated(0.11) benign(0.271) TCGA-CS-4938-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-4938-01 2 63272688 63272688 C T EHBP1 3'UTR 0.64 TCGA-CS-4938-01 3 189705423 189705423 C A LEPREL1 Missense_Mutation p.A331S 0.22 tolerated(0.71) benign(0.004) TCGA-CS-4938-01 4 111441429 111441429 C G ENPEP Missense_Mutation p.P545R 0.45 deleterious(0) probably_damaging(0.996) TCGA-CS-4938-01 4 123336616 123336616 A T ADAD1 Silent p.P444P 0.38 TCGA-CS-4938-01 4 1244636 1244636 C T CTBP1 5'Flank 0.07 TCGA-CS-4938-01 4 164393959 164393959 G C TKTL2 Missense_Mutation p.P310A 0.06 tolerated(0.25) benign(0.011) TCGA-CS-4938-01 4 81207632 81207632 C G FGF5 Missense_Mutation p.R205G 0.34 deleterious(0) probably_damaging(0.978) TCGA-CS-4938-01 7 139824520 139824520 T G KDM7A Missense_Mutation p.S318R 0.36 tolerated(0.16) probably_damaging(0.999) TCGA-CS-4938-01 7 87757957 87757957 A G ADAM22 Missense_Mutation p.Y240C 0.10 deleterious(0) probably_damaging(0.999) TCGA-CS-4938-01 X 127186136 127186136 C A ACTRT1 Missense_Mutation p.G17V 0.37 deleterious(0) probably_damaging(0.993) TCGA-CS-4938-01 X 152083048 152083048 T C ZNF185 Silent p.A5A 0.53 TCGA-CS-4938-01 X 76939674 76939675 TT C ATRX Frame_Shift_Del p.K358Sfs*2 0.23 TCGA-CS-4941-01 11 118885707 118885707 C G CCDC84 Missense_Mutation p.A240G 0.29 deleterious(0) probably_damaging(0.999) TCGA-CS-4941-01 11 44640201 44640201 G A CD82 Silent p.E218E 0.23 TCGA-CS-4941-01 11 65638766 65638766 C T EFEMP2 Missense_Mutation p.G77S 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-CS-4941-01 11 6588129 6588129 G A DNHD1 Missense_Mutation p.R3797Q 0.40 benign(0.001) TCGA-CS-4941-01 11 6588423 6588423 G A DNHD1 Missense_Mutation p.R3895H 0.28 benign(0.001) TCGA-CS-4941-01 11 6867517 6867517 G A OR10A5 Missense_Mutation p.V202I 0.28 tolerated(0.61) benign(0.02) TCGA-CS-4941-01 13 103299660 103299660 G C TPP2 Missense_Mutation p.R865T 0.32 deleterious(0.04) benign(0.428) TCGA-CS-4941-01 15 42434838 42434838 G A PLA2G4F Silent p.D739D 0.29 TCGA-CS-4941-01 16 53679916 53679916 C T RPGRIP1L Splice_Site p.X769_splice 0.31 TCGA-CS-4941-01 17 38812821 38812821 G A KRT222 Nonsense_Mutation p.R241* 0.28 TCGA-CS-4941-01 17 7414879 7414879 C T POLR2A Missense_Mutation p.T1358M 0.18 possibly_damaging(0.455) TCGA-CS-4941-01 17 8078035 8078035 C T TMEM107 Intron 0.34 TCGA-CS-4941-01 18 61449736 61449736 T A SERPINB7 Missense_Mutation p.L44M 0.30 deleterious(0.03) possibly_damaging(0.658) TCGA-CS-4941-01 19 23836144 23836144 T A ZNF675 Missense_Mutation p.T531S 0.22 tolerated(0.15) possibly_damaging(0.889) TCGA-CS-4941-01 19 31038959 31038959 G A ZNF536 Silent p.P811P 0.25 TCGA-CS-4941-01 19 34832986 34832986 G A KIAA0355 Missense_Mutation p.G716E 0.27 tolerated_low_confidence(0.08) benign(0.134) TCGA-CS-4941-01 19 46314158 46314158 G A RSPH6A Intron 0.56 TCGA-CS-4941-01 19 55649402 55649402 C T TNNT1 Missense_Mutation p.R143Q 0.26 deleterious(0) probably_damaging(0.922) TCGA-CS-4941-01 1 12726866 12726866 G A AADACL4 3'UTR 0.32 TCGA-CS-4941-01 1 145473827 145473827 G A ANKRD34A Missense_Mutation p.G167R 0.20 tolerated(0.51) probably_damaging(0.915) TCGA-CS-4941-01 1 152275719 152275719 C T FLG Silent p.E3881E 0.21 TCGA-CS-4941-01 1 156883725 156883725 C T PEAR1 Missense_Mutation p.P932L 0.43 deleterious(0.01) benign(0.263) TCGA-CS-4941-01 1 176525627 176525627 C T PAPPA2 Nonsense_Mutation p.R57* 0.44 TCGA-CS-4941-01 1 192321182 192321182 C A RGS21 Missense_Mutation p.L32I 0.28 tolerated(0.07) probably_damaging(0.999) TCGA-CS-4941-01 1 19981874 19981874 A C MINOS1-NBL1 Silent p.T76T 0.32 TCGA-CS-4941-01 1 206647731 206647731 C T IKBKE Missense_Mutation p.R49C 0.44 tolerated(0.16) possibly_damaging(0.846) TCGA-CS-4941-01 1 44804751 44804751 T G ERI3 Missense_Mutation p.E152A 0.39 deleterious(0) probably_damaging(1) TCGA-CS-4941-01 20 39802384 39802384 G A PLCG1 Missense_Mutation p.E1163K 0.31 deleterious(0.01) possibly_damaging(0.723) TCGA-CS-4941-01 21 32119504 32119504 T C KRTAP21-2 Missense_Mutation p.Y6C 0.31 deleterious_low_confidence(0) unknown(0) TCGA-CS-4941-01 21 43708163 43708163 C T ABCG1 Nonsense_Mutation p.R380* 0.11 TCGA-CS-4941-01 2 122139824 122139824 C T CLASP1 Missense_Mutation p.A1151T 0.50 tolerated_low_confidence(0.5) benign(0.017) TCGA-CS-4941-01 2 127828379 127828379 C T BIN1 Missense_Mutation p.R60Q 0.22 deleterious(0.04) benign(0.06) TCGA-CS-4941-01 2 136567270 136567270 C T LCT Missense_Mutation p.V883I 0.26 tolerated(0.07) benign(0.035) TCGA-CS-4941-01 2 179465605 179465605 G A TTN Missense_Mutation p.P18676S 0.23 TCGA-CS-4941-01 2 192711355 192711355 C T SDPR Silent p.K99K 0.26 TCGA-CS-4941-01 2 197943464 197943464 T G ANKRD44 Missense_Mutation p.Y513S 0.22 deleterious(0) probably_damaging(0.999) TCGA-CS-4941-01 4 80328975 80328975 C T GK2 Missense_Mutation p.S127N 0.27 tolerated(0.49) benign(0.005) TCGA-CS-4941-01 5 142526856 142526856 G A ARHGAP26 Missense_Mutation p.S633N 0.28 tolerated(0.08) benign(0.213) TCGA-CS-4941-01 5 17275508 17275508 C T BASP1 Silent p.D61D 0.30 TCGA-CS-4941-01 5 26881407 26881407 T G CDH9 Silent p.A736A 0.34 TCGA-CS-4941-01 5 71756221 71756221 A G ZNF366 Missense_Mutation p.V368A 0.21 tolerated(0.11) benign(0.37) TCGA-CS-4941-01 6 161152837 161152837 C T PLG Missense_Mutation p.T500M 0.31 tolerated(0.13) possibly_damaging(0.767) TCGA-CS-4941-01 6 31125375 31125375 C T CCHCR1 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-CS-4941-01 6 82459402 82459402 T A FAM46A 3'UTR 0.29 TCGA-CS-4941-01 7 141736692 141736692 C T MGAM Missense_Mutation p.R716C 0.22 deleterious(0) probably_damaging(0.999) TCGA-CS-4941-01 7 21742356 21742356 T C DNAH11 Missense_Mutation p.I2077T 0.22 possibly_damaging(0.475) TCGA-CS-4941-01 7 62752515 62752515 C A ZNF733P RNA 0.19 TCGA-CS-4941-01 7 73008421 73008422 - C MLXIPL Intron 0.28 TCGA-CS-4941-01 8 132971845 132971845 C G EFR3A Missense_Mutation p.H264D 0.22 deleterious(0) probably_damaging(0.986) TCGA-CS-4941-01 8 24350112 24350112 T A ADAM7 Splice_Site p.X552_splice 0.28 TCGA-CS-4941-01 8 24350563 24350563 A T ADAM7 Nonsense_Mutation p.R555* 0.16 TCGA-CS-4941-01 8 97256197 97256197 C T MTERFD1 Missense_Mutation p.V337M 0.21 deleterious(0.01) probably_damaging(0.922) TCGA-CS-4941-01 9 123152041 123152041 C T CDK5RAP2 Missense_Mutation p.R1868Q 0.08 deleterious(0) possibly_damaging(0.885) TCGA-CS-4941-01 9 140409907 140409907 C T PNPLA7 Silent p.A383A 0.23 TCGA-CS-4941-01 9 18777565 18777565 T A ADAMTSL1 Missense_Mutation p.L1113Q 0.26 tolerated(0.36) benign(0.005) TCGA-CS-4941-01 9 38396064 38396064 C T ALDH1B1 Missense_Mutation p.R107C 0.25 deleterious(0.03) benign(0.009) TCGA-CS-4941-01 X 109695334 109695334 A T RGAG1 Missense_Mutation p.M497L 0.50 tolerated(0.07) benign(0.002) TCGA-CS-4941-01 X 115303726 115303726 G A AGTR2 Missense_Mutation p.V65M 0.03 deleterious(0) probably_damaging(0.998) TCGA-CS-4941-01 X 128632026 128632026 C G SMARCA1 Missense_Mutation p.D434H 0.50 deleterious(0) probably_damaging(0.995) TCGA-CS-4941-01 X 41204458 41204458 C T DDX3X Missense_Mutation p.R351W 0.52 deleterious(0) possibly_damaging(0.537) TCGA-CS-4942-01 10 75406654 75406654 A G SYNPO2L Missense_Mutation p.I919T 0.43 deleterious(0) probably_damaging(0.989) TCGA-CS-4942-01 10 86001161 86001161 G A LRIT1 Missense_Mutation p.A12V 0.26 tolerated(0.2) benign(0.007) TCGA-CS-4942-01 11 46760818 46760818 C T F2 Missense_Mutation p.P577S 0.34 deleterious(0.03) possibly_damaging(0.498) TCGA-CS-4942-01 11 75902837 75902837 G A WNT11 Missense_Mutation p.R221C 0.04 deleterious(0) probably_damaging(0.91) TCGA-CS-4942-01 12 119978611 119978611 C T CCDC60 3'UTR 0.24 TCGA-CS-4942-01 13 42763202 42763202 C T DGKH Silent p.L557L 0.05 TCGA-CS-4942-01 16 28922261 28922261 C T RABEP2 Missense_Mutation p.R346Q 0.06 tolerated(0.88) benign(0) TCGA-CS-4942-01 16 4786629 4786629 C G C16orf71 Missense_Mutation p.D38E 0.04 deleterious(0) probably_damaging(0.978) TCGA-CS-4942-01 17 28964168 28964168 G A LRRC37BP1 RNA 0.55 TCGA-CS-4942-01 17 7577114 7577114 C A TP53 Missense_Mutation p.C275F 0.83 deleterious(0) probably_damaging(0.983) TCGA-CS-4942-01 18 756710 756710 A G YES1 Missense_Mutation p.S40P 0.39 tolerated(0.23) benign(0.024) TCGA-CS-4942-01 19 991974 991974 C T WDR18 Silent p.A317A 0.25 TCGA-CS-4942-01 1 197072215 197072215 C G ASPM Missense_Mutation p.A2056P 0.31 deleterious(0.03) probably_damaging(0.984) TCGA-CS-4942-01 1 243328278 243328278 C T CEP170 Missense_Mutation p.R995H 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-CS-4942-01 1 247875530 247875530 G T OR6F1 Missense_Mutation p.H176Q 0.03 deleterious(0) probably_damaging(0.991) TCGA-CS-4942-01 1 93646284 93646284 T C CCDC18 Missense_Mutation p.F2S 0.11 deleterious_low_confidence(0) benign(0) TCGA-CS-4942-01 22 51237140 51237140 G C RPL23AP82 RNA 0.08 TCGA-CS-4942-01 2 103149082 103149082 A G SLC9A4 Missense_Mutation p.T778A 0.36 tolerated(0.47) benign(0.014) TCGA-CS-4942-01 2 108496508 108496508 A T RGPD4 Missense_Mutation p.N1670I 0.05 deleterious_low_confidence(0.01) benign(0) TCGA-CS-4942-01 2 114699855 114699855 C T ACTR3 Silent p.I259I 0.40 TCGA-CS-4942-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-4942-01 2 27665528 27665528 C T KRTCAP3 Silent p.A37A 0.36 TCGA-CS-4942-01 2 86316951 86316951 G A POLR1A Silent p.G178G 0.31 TCGA-CS-4942-01 3 49159715 49159715 G A LAMB2 Silent p.H1554H 0.34 TCGA-CS-4942-01 3 52159164 52159164 C T POC1A Missense_Mutation p.G283R 0.28 deleterious(0) probably_damaging(0.967) TCGA-CS-4942-01 4 141578954 141578954 T C TBC1D9 Missense_Mutation p.D645G 0.37 deleterious(0) probably_damaging(0.999) TCGA-CS-4942-01 4 158065079 158065079 A G GLRB Missense_Mutation p.N291S 0.06 deleterious(0.03) possibly_damaging(0.892) TCGA-CS-4942-01 5 54436230 54436230 G A CDC20B Silent p.C164C 0.29 TCGA-CS-4942-01 5 67575480 67575480 G A PIK3R1 Missense_Mutation p.A185T 0.11 tolerated(0.17) benign(0.129) TCGA-CS-4942-01 6 32410420 32410420 C A HLA-DRA Missense_Mutation p.A93D 0.33 tolerated(0.62) probably_damaging(0.93) TCGA-CS-4942-01 7 31877484 31877484 G A PDE1C Missense_Mutation p.A421V 0.25 deleterious(0.02) benign(0.342) TCGA-CS-4942-01 9 104499941 104499941 C T GRIN3A Silent p.P107P 0.56 TCGA-CS-4942-01 X 131216497 131216497 A G FRMD7 Missense_Mutation p.F267L 0.34 deleterious(0) probably_damaging(0.994) TCGA-CS-4942-01 X 147030376 147030376 C G FMR1 3'UTR 0.11 TCGA-CS-4942-01 X 39923699 39923699 C T BCOR Missense_Mutation p.R1131Q 0.30 tolerated(0.2) benign(0.005) TCGA-CS-4942-01 X 55514658 55514658 A G USP51 Missense_Mutation p.C239R 0.37 deleterious(0) probably_damaging(0.99) TCGA-CS-4942-01 X 76854943 76854944 CT G ATRX Frame_Shift_Del p.G1965Vfs*17 0.12 TCGA-CS-4942-01 X 8555923 8555923 T C KAL1 Missense_Mutation p.E213G 0.44 deleterious(0) probably_damaging(0.993) TCGA-CS-4943-01 11 130069892 130069892 C T ST14 Silent p.G618G 0.05 TCGA-CS-4943-01 11 73829328 73829328 C G C2CD3 Missense_Mutation p.V489L 0.40 tolerated(0.34) benign(0.004) TCGA-CS-4943-01 12 4598906 4598906 C T C12orf4 3'UTR 0.10 TCGA-CS-4943-01 12 54338833 54338833 G A HOXC13 Silent p.K262K 0.36 TCGA-CS-4943-01 13 75873512 75873512 T A TBC1D4 Missense_Mutation p.D1037V 0.07 deleterious(0.04) probably_damaging(1) TCGA-CS-4943-01 14 101438447 101438447 A G SNORD114-14 RNA 0.35 TCGA-CS-4943-01 16 30018527 30018529 CTT - DOC2A In_Frame_Del p.K207del 0.53 TCGA-CS-4943-01 16 81969947 81969947 G A PLCG2 Missense_Mutation p.G1006S 0.46 deleterious(0) probably_damaging(1) TCGA-CS-4943-01 17 15496762 15496762 C T CDRT1 Missense_Mutation p.C632Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-CS-4943-01 17 62498302 62498302 T G DDX5 Missense_Mutation p.Q378H 0.18 tolerated(0.08) probably_damaging(0.971) TCGA-CS-4943-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.87 deleterious(0) probably_damaging(1) TCGA-CS-4943-01 19 39070725 39070725 C T RYR1 Missense_Mutation p.T4823M 0.43 unknown(0) TCGA-CS-4943-01 19 39071043 39071043 G T RYR1 Missense_Mutation p.V4849F 0.46 possibly_damaging(0.625) TCGA-CS-4943-01 1 114310931 114310931 C G RSBN1 Missense_Mutation p.R580T 0.39 deleterious(0.01) possibly_damaging(0.794) TCGA-CS-4943-01 1 89520410 89520410 G C GBP1 Silent p.V540V 0.23 TCGA-CS-4943-01 20 46291893 46291893 T C SULF2 Missense_Mutation p.N764S 0.05 deleterious(0) probably_damaging(0.998) TCGA-CS-4943-01 21 17238647 17238647 A G USP25 Missense_Mutation p.N860S 0.25 tolerated(0.14) benign(0.172) TCGA-CS-4943-01 22 23404005 23404005 C T RTDR1 Missense_Mutation p.A258T 0.30 tolerated(0.32) benign(0.22) TCGA-CS-4943-01 22 32879927 32879927 A G FBXO7 Missense_Mutation p.N154S 0.36 tolerated(0.86) benign(0) TCGA-CS-4943-01 2 11355517 11355517 A T ROCK2 Missense_Mutation p.L540H 0.43 deleterious(0) probably_damaging(0.997) TCGA-CS-4943-01 2 128399630 128399630 G A LIMS2 Silent p.H242H 0.38 TCGA-CS-4943-01 2 188225389 188225389 T G CALCRL Silent p.T239T 0.44 TCGA-CS-4943-01 2 202609063 202609063 G A ALS2 Silent p.H696H 0.47 TCGA-CS-4943-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-4943-01 3 127337890 127337890 C T MCM2 Silent p.F678F 0.15 TCGA-CS-4943-01 3 148930358 148930358 A G CP Missense_Mutation p.F92L 0.06 deleterious(0.04) benign(0.03) TCGA-CS-4943-01 3 19575087 19575087 C T KCNH8 Silent p.G940G 0.37 TCGA-CS-4943-01 5 115351039 115351039 T C AQPEP Silent p.T847T 0.06 TCGA-CS-4943-01 5 179740844 179740844 A T GFPT2 Missense_Mutation p.I465N 0.44 deleterious(0) possibly_damaging(0.843) TCGA-CS-4943-01 6 117609712 117609712 A G ROS1 Silent p.P2329P 0.39 TCGA-CS-4943-01 6 124979504 124979504 C T NKAIN2 Missense_Mutation p.A149V 0.43 tolerated(0.31) possibly_damaging(0.721) TCGA-CS-4943-01 7 2404028 2404028 C T EIF3B Missense_Mutation p.R341C 0.45 deleterious(0) possibly_damaging(0.792) TCGA-CS-4943-01 7 47876598 47876598 G A PKD1L1 Missense_Mutation p.P1955L 0.06 deleterious(0.05) benign(0.145) TCGA-CS-4943-01 9 100459509 100459509 G A XPA Silent p.A22A 0.20 TCGA-CS-4943-01 9 134073213 134073213 A G NUP214 Silent p.Q1444Q 0.17 TCGA-CS-4943-01 9 21974684 21974684 G C CDKN2A Missense_Mutation p.P48R 0.31 deleterious(0.02) probably_damaging(1) TCGA-CS-4943-01 9 96080327 96080327 G A WNK2 3'UTR 0.08 TCGA-CS-4943-01 X 76829760 76829760 G C ATRX Nonsense_Mutation p.S2094* 0.86 TCGA-CS-4944-01 10 7214050 7214050 C T SFMBT2 Missense_Mutation p.R741Q 0.33 tolerated(0.5) possibly_damaging(0.544) TCGA-CS-4944-01 10 91477448 91477448 A G KIF20B Missense_Mutation p.I414V 0.03 deleterious(0) probably_damaging(0.949) TCGA-CS-4944-01 10 98709000 98709000 C G LCOR Missense_Mutation p.D62E 0.37 deleterious(0.01) benign(0.019) TCGA-CS-4944-01 12 122758652 122758652 T C CLIP1 Missense_Mutation p.M1342V 0.40 tolerated(0.29) possibly_damaging(0.636) TCGA-CS-4944-01 14 81610525 81610525 G T TSHR Missense_Mutation p.G708V 0.33 deleterious(0.02) possibly_damaging(0.881) TCGA-CS-4944-01 15 27574011 27574011 T C GABRG3 Missense_Mutation p.S184P 0.31 deleterious(0) possibly_damaging(0.855) TCGA-CS-4944-01 15 31202868 31202868 A G FAN1 Missense_Mutation p.E476G 0.05 deleterious(0.03) benign(0.233) TCGA-CS-4944-01 16 72110680 72110680 C T HPR Silent p.Y249Y 0.34 TCGA-CS-4944-01 19 36002345 36002345 T C DMKN Missense_Mutation p.S296G 0.43 tolerated(0.34) unknown(0) TCGA-CS-4944-01 1 227348328 227348328 T C CDC42BPA Silent p.K203K 0.34 TCGA-CS-4944-01 1 247978653 247978653 G T OR14A16 Missense_Mutation p.P127T 0.31 deleterious(0) probably_damaging(1) TCGA-CS-4944-01 21 46925852 46925852 G A COL18A1 Missense_Mutation p.R1243H 0.30 probably_damaging(0.999) TCGA-CS-4944-01 2 190313123 190313123 T C WDR75 Silent p.S35S 0.36 TCGA-CS-4944-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-4944-01 2 238280668 238280668 C T COL6A3 Missense_Mutation p.R1331H 0.40 probably_damaging(0.998) TCGA-CS-4944-01 2 29247207 29247207 G A FAM179A Missense_Mutation p.R607H 0.19 deleterious(0) probably_damaging(0.988) TCGA-CS-4944-01 3 140682063 140682063 A G SLC25A36 Missense_Mutation p.M127V 0.34 tolerated(0.72) benign(0) TCGA-CS-4944-01 4 69795535 69795535 T C UGT2A3 Missense_Mutation p.E527G 0.32 deleterious(0) possibly_damaging(0.489) TCGA-CS-4944-01 5 67522794 67522795 - G PIK3R1 Frame_Shift_Ins p.A98Gfs*8 0.24 TCGA-CS-4944-01 7 6737039 6737039 T A ZNF12 Missense_Mutation p.I57F 0.42 deleterious(0) probably_damaging(0.996) TCGA-CS-4944-01 7 96651642 96651642 C A DLX5 Missense_Mutation p.G132V 0.38 deleterious(0) benign(0.023) TCGA-CS-4944-01 8 144808629 144808629 C T FAM83H Missense_Mutation p.R1001H 0.40 tolerated(0.07) possibly_damaging(0.755) TCGA-CS-4944-01 9 7128074 7128075 GG - KDM4C Frame_Shift_Del p.K873Nfs*36 0.27 TCGA-CS-4944-01 X 70148834 70148834 C A SLC7A3 Missense_Mutation p.R130L 0.06 deleterious(0.05) benign(0.249) TCGA-CS-5390-01 11 118380710 118380710 A G KMT2A Missense_Mutation p.M3650V 0.07 benign(0.005) TCGA-CS-5390-01 11 66323638 66323638 G A CTD-3074O7.2 3'Flank 0.32 TCGA-CS-5390-01 12 63543713 63543713 C T AVPR1A Missense_Mutation p.V302I 0.04 tolerated(0.18) benign(0.012) TCGA-CS-5390-01 13 21381759 21381759 C G XPO4 Missense_Mutation p.D552H 0.04 tolerated(0.18) possibly_damaging(0.491) TCGA-CS-5390-01 13 37678952 37678952 G A CSNK1A1L Missense_Mutation p.R148C 0.20 deleterious_low_confidence(0.04) probably_damaging(0.92) TCGA-CS-5390-01 13 53016551 53016553 AAG - VPS36 In_Frame_Del p.L42del 0.11 TCGA-CS-5390-01 13 96489363 96489363 G A UGGT2 Nonsense_Mutation p.Q1460* 0.33 TCGA-CS-5390-01 14 106208372 106208372 C T IGHG1 Silent p.E176E 0.04 TCGA-CS-5390-01 14 76349031 76349031 A G TTLL5 Missense_Mutation p.I1176V 0.54 tolerated_low_confidence(0.26) benign(0.001) TCGA-CS-5390-01 15 101929754 101929754 G A PCSK6 Missense_Mutation p.R408C 0.41 deleterious(0) probably_damaging(0.985) TCGA-CS-5390-01 17 37985663 37985663 G A IKZF3 Missense_Mutation p.A47V 0.05 tolerated(0.29) benign(0.001) TCGA-CS-5390-01 17 39725736 39725736 T A KRT9 Missense_Mutation p.E329V 0.40 deleterious(0) probably_damaging(0.966) TCGA-CS-5390-01 17 56619088 56619088 G A C17orf47 3'UTR 0.43 TCGA-CS-5390-01 18 64218460 64218460 G T CDH19 Missense_Mutation p.L216M 0.04 tolerated(0.14) probably_damaging(0.992) TCGA-CS-5390-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.63 deleterious(0.01) benign(0.045) TCGA-CS-5390-01 1 15904231 15904231 G A AGMAT Silent p.A283A 0.08 TCGA-CS-5390-01 1 210016932 210016932 C G DIEXF Missense_Mutation p.H640D 0.20 deleterious(0.02) benign(0.216) TCGA-CS-5390-01 1 60314160 60314160 G A HOOK1 Missense_Mutation p.R368H 0.66 deleterious(0) probably_damaging(1) TCGA-CS-5390-01 1 67895672 67895675 TTCT - SERBP1 Frame_Shift_Del p.G105* 0.40 TCGA-CS-5390-01 1 70452024 70452024 C T LRRC7 Missense_Mutation p.L258F 0.55 deleterious(0.02) possibly_damaging(0.826) TCGA-CS-5390-01 1 78430845 78430845 C A FUBP1 Nonsense_Mutation p.G182* 0.06 TCGA-CS-5390-01 20 861878 861878 C T ANGPT4 Missense_Mutation p.R296H 0.21 tolerated(0.11) benign(0.262) TCGA-CS-5390-01 22 16287514 16287514 G A POTEH Silent p.D124D 0.10 TCGA-CS-5390-01 2 163693238 163693238 C T KCNH7 Missense_Mutation p.C39Y 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-CS-5390-01 2 190927295 190927295 T G MSTN Missense_Mutation p.I10L 0.34 tolerated_low_confidence(0.57) benign(0.003) TCGA-CS-5390-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-5390-01 2 233244328 233244328 C T ALPP Missense_Mutation p.R139C 0.08 tolerated(0.07) benign(0.192) TCGA-CS-5390-01 2 74682279 74682279 G A INO80B Silent p.G12G 0.22 TCGA-CS-5390-01 3 10381974 10381974 C A ATP2B2 Missense_Mutation p.Q1063H 0.05 deleterious(0.02) possibly_damaging(0.83) TCGA-CS-5390-01 3 57302495 57302498 AAAC - APPL1 Frame_Shift_Del p.Q656Nfs*13 0.31 TCGA-CS-5390-01 5 1075520 1075520 C A SLC12A7 Missense_Mutation p.A645S 0.07 deleterious(0) probably_damaging(0.987) TCGA-CS-5390-01 5 13719099 13719099 T C DNAH5 Missense_Mutation p.T4131A 0.36 possibly_damaging(0.523) TCGA-CS-5390-01 5 13841810 13841810 G A DNAH5 Silent p.F1825F 0.10 TCGA-CS-5390-01 5 150885058 150885058 C T FAT2 3'UTR 0.42 TCGA-CS-5390-01 5 156770036 156770036 T C FNDC9 Missense_Mutation p.Q170R 0.43 tolerated(0.45) possibly_damaging(0.677) TCGA-CS-5390-01 5 159912436 159912436 G C MIR146A RNA 0.35 TCGA-CS-5390-01 6 106764041 106764041 G A ATG5 Nonsense_Mutation p.R15* 0.33 TCGA-CS-5390-01 6 116938227 116938227 A G RSPH4A Silent p.G147G 0.40 TCGA-CS-5390-01 6 157521872 157521872 C - ARID1B Frame_Shift_Del p.P1383Qfs*65 0.17 TCGA-CS-5390-01 6 31830546 31830546 C A NEU1 Missense_Mutation p.G3V 0.20 tolerated_low_confidence(0.24) benign(0) TCGA-CS-5390-01 6 31913064 31913064 T G C2 Missense_Mutation p.I730S 0.33 deleterious(0) possibly_damaging(0.717) TCGA-CS-5390-01 6 36489539 36489539 C A STK38 Missense_Mutation p.R121L 0.33 tolerated(0.28) possibly_damaging(0.872) TCGA-CS-5390-01 6 3850199 3850199 C T FAM50B Missense_Mutation p.H52Y 0.40 deleterious(0.03) possibly_damaging(0.498) TCGA-CS-5390-01 6 38980113 38980113 G A DNAH8 Silent p.L4281L 0.34 TCGA-CS-5390-01 6 79650981 79650981 G C PHIP Nonsense_Mutation p.S1632* 0.03 TCGA-CS-5390-01 7 150554515 150554515 C T AOC1 Silent p.Y319Y 0.33 TCGA-CS-5390-01 8 113259317 113259319 AGA - CSMD3 In_Frame_Del p.L3385del 0.13 TCGA-CS-5390-01 8 124219482 124219482 C T FAM83A Missense_Mutation p.R287C 0.42 deleterious(0.03) benign(0.152) TCGA-CS-5390-01 9 114304161 114304161 G A ZNF483 Missense_Mutation p.D316N 0.04 tolerated(0.4) possibly_damaging(0.539) TCGA-CS-5390-01 9 139412203 139412203 C T NOTCH1 Splice_Site p.X481_splice 0.11 TCGA-CS-5390-01 9 139413129 139413131 TCA - NOTCH1 In_Frame_Del p.D338del 0.50 TCGA-CS-5390-01 9 98774903 98774903 G C ERCC6L2 Missense_Mutation p.K329N 0.45 tolerated(0.07) benign(0.032) TCGA-CS-5390-01 X 100808652 100808652 G A ARMCX1 Missense_Mutation p.G247S 0.34 deleterious(0.01) probably_damaging(1) TCGA-CS-5390-01 X 18221653 18221653 G T BEND2 Missense_Mutation p.A292D 0.05 deleterious(0.03) benign(0.249) TCGA-CS-5390-01 X 19610182 19610182 T A SH3KBP1 Intron 0.24 TCGA-CS-5390-01 X 77394339 77394339 C T TAF9B Splice_Site p.X45_splice 0.36 TCGA-CS-5393-01 11 124293908 124293908 G A OR8B4 Missense_Mutation p.S287L 0.37 tolerated_low_confidence(1) benign(0) TCGA-CS-5393-01 11 126126563 126126563 C G FAM118B Silent p.V266V 0.43 TCGA-CS-5393-01 11 4843405 4843405 A G OR51F2 Missense_Mutation p.I264V 0.35 tolerated(0.36) probably_damaging(0.994) TCGA-CS-5393-01 11 63283944 63283944 A G LGALS12 3'UTR 0.37 TCGA-CS-5393-01 11 96092275 96092275 A T CCDC82 Missense_Mutation p.F483Y 0.28 tolerated(0.93) benign(0.239) TCGA-CS-5393-01 12 21593340 21593340 A G PYROXD1 Silent p.V41V 0.06 TCGA-CS-5393-01 12 52865067 52865067 A G KRT6C Missense_Mutation p.M309T 0.34 deleterious(0) probably_damaging(0.932) TCGA-CS-5393-01 15 39883403 39883403 A G THBS1 Silent p.P755P 0.33 TCGA-CS-5393-01 16 21658638 21658638 G T IGSF6 Missense_Mutation p.D81E 0.44 tolerated(0.1) benign(0.141) TCGA-CS-5393-01 17 39034592 39034597 TCTAGA GCTG KRT20 Frame_Shift_Del p.L314Sfs*31 0.24 TCGA-CS-5393-01 17 7577532 7577532 G A TP53 Missense_Mutation p.P250L 0.71 deleterious(0) probably_damaging(1) TCGA-CS-5393-01 19 11132435 11132435 A G SMARCA4 Missense_Mutation p.H884R 0.30 benign(0.348) TCGA-CS-5393-01 19 30503230 30503230 G A URI1 Missense_Mutation p.R406H 0.22 deleterious(0.04) benign(0.075) TCGA-CS-5393-01 19 55597452 55597452 G A EPS8L1 Nonsense_Mutation p.W514* 0.05 TCGA-CS-5393-01 1 118441728 118441728 C A GDAP2 Silent p.V249V 0.33 TCGA-CS-5393-01 1 248059264 248059264 A G OR2W3 Missense_Mutation p.I126V 0.23 tolerated(1) benign(0.006) TCGA-CS-5393-01 2 152474871 152474871 C T NEB Missense_Mutation p.R3665H 0.20 benign(0.025) TCGA-CS-5393-01 2 170917865 170917865 A G UBR3 Missense_Mutation p.K1644R 0.37 tolerated(0.35) benign(0) TCGA-CS-5393-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-5393-01 2 54880943 54880943 C G SPTBN1 Silent p.L1925L 0.37 TCGA-CS-5393-01 3 187449545 187449545 A G BCL6 Missense_Mutation p.L112P 0.29 deleterious(0) probably_damaging(1) TCGA-CS-5393-01 3 36779426 36779426 G T DCLK3 Missense_Mutation p.A242D 0.04 tolerated(0.16) benign(0.157) TCGA-CS-5393-01 4 160277114 160277114 G A RAPGEF2 Silent p.P1426P 0.27 TCGA-CS-5393-01 4 85600267 85600267 C T WDFY3 Missense_Mutation p.A3318T 0.42 tolerated(0.49) benign(0.065) TCGA-CS-5393-01 5 23526956 23526956 C T PRDM9 Missense_Mutation p.R587W 0.35 deleterious(0) possibly_damaging(0.833) TCGA-CS-5393-01 6 123332253 123332253 A G CLVS2 Silent p.Q171Q 0.04 TCGA-CS-5393-01 6 32039776 32039776 C T TNXB Missense_Mutation p.A1661T 0.45 probably_damaging(0.99) TCGA-CS-5393-01 7 30092391 30092391 C T PLEKHA8 Silent p.I235I 0.16 TCGA-CS-5393-01 7 44805131 44805131 C A ZMIZ2 Missense_Mutation p.P732H 0.71 deleterious(0.02) possibly_damaging(0.592) TCGA-CS-5393-01 7 87046828 87046828 T C ABCB4 Missense_Mutation p.T828A 0.32 tolerated(0.22) benign(0.019) TCGA-CS-5393-01 8 113304784 113304784 G A CSMD3 Missense_Mutation p.P2924S 0.20 tolerated(0.41) benign(0.007) TCGA-CS-5393-01 8 142488812 142488812 G A MROH5 3'UTR 0.52 TCGA-CS-5393-01 9 19346705 19346705 G T DENND4C Missense_Mutation p.G1264V 0.04 tolerated(0.3) benign(0.003) TCGA-CS-5393-01 X 109694416 109694416 T C RGAG1 Missense_Mutation p.S191P 0.60 tolerated(0.06) benign(0.117) TCGA-CS-5393-01 X 63411385 63411385 G A AMER1 Silent p.H594H 0.07 TCGA-CS-5394-01 10 71007297 71007297 C T HKDC1 Missense_Mutation p.R405W 0.30 deleterious(0.02) probably_damaging(0.945) TCGA-CS-5394-01 10 90708581 90708581 A G ACTA2 Missense_Mutation p.I36T 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.73) TCGA-CS-5394-01 11 64573758 64573758 C T MEN1 Missense_Mutation p.R337H 0.41 tolerated(0.13) possibly_damaging(0.484) TCGA-CS-5394-01 13 29600879 29600879 G A MTUS2 Missense_Mutation p.E692K 0.43 deleterious(0.01) possibly_damaging(0.453) TCGA-CS-5394-01 14 24543956 24543956 C T CPNE6 Silent p.R208R 0.10 TCGA-CS-5394-01 14 33293788 33293788 G A AKAP6 Missense_Mutation p.G2257R 0.44 tolerated_low_confidence(0.11) benign(0.004) TCGA-CS-5394-01 14 59970666 59970666 T A JKAMP Missense_Mutation p.V271E 0.43 deleterious(0.03) benign(0.002) TCGA-CS-5394-01 14 59970667 59970667 G A JKAMP Silent p.V271V 0.43 TCGA-CS-5394-01 15 33822854 33822854 C G RYR3 Missense_Mutation p.S114C 0.39 probably_damaging(0.999) TCGA-CS-5394-01 15 44109449 44109449 T C MFAP1 Missense_Mutation p.I93V 0.34 tolerated(0.29) benign(0.031) TCGA-CS-5394-01 17 67221501 67221501 A T ABCA10 5'UTR 0.44 TCGA-CS-5394-01 19 42798786 42798787 - A CIC Frame_Shift_Ins p.E1454Rfs*3 0.33 TCGA-CS-5394-01 1 159890149 159890149 T C TAGLN2 Missense_Mutation p.N51D 0.90 tolerated(0.35) benign(0.016) TCGA-CS-5394-01 1 78422352 78422352 C T FUBP1 Nonsense_Mutation p.W537* 0.79 TCGA-CS-5394-01 20 46305256 46305256 C A SULF2 Silent p.A454A 0.50 TCGA-CS-5394-01 20 60701373 60701373 C G LSM14B Missense_Mutation p.S102C 0.50 deleterious(0) possibly_damaging(0.695) TCGA-CS-5394-01 20 62200696 62200696 T C HELZ2 Missense_Mutation p.N298S 0.38 tolerated(0.05) possibly_damaging(0.524) TCGA-CS-5394-01 2 10016065 10016065 A G TAF1B Missense_Mutation p.M209V 0.44 deleterious(0) benign(0.138) TCGA-CS-5394-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-5394-01 2 242035240 242035244 GTTTG - MTERFD2 3'UTR 0.41 TCGA-CS-5394-01 3 52621372 52621372 G C PBRM1 Silent p.V1015V 0.43 TCGA-CS-5394-01 4 134071550 134071553 CAAA - PCDH10 Frame_Shift_Del p.K86Rfs*41 0.34 TCGA-CS-5394-01 4 162841556 162841556 C T FSTL5 Missense_Mutation p.G137R 0.37 deleterious(0) possibly_damaging(0.726) TCGA-CS-5394-01 5 67589586 67589591 ATGAAT - PIK3R1 In_Frame_Del p.E451_Y452del 0.43 TCGA-CS-5394-01 6 114277279 114277280 - T HDAC2 Frame_Shift_Ins p.M132Nfs*4 0.31 TCGA-CS-5394-01 7 127255106 127255106 C T PAX4 Missense_Mutation p.R55H 0.50 deleterious(0) probably_damaging(0.991) TCGA-CS-5394-01 8 39695768 39695768 G A ADAM2 5'UTR 0.33 TCGA-CS-5394-01 9 128001229 128001229 C T HSPA5 Silent p.E329E 0.06 TCGA-CS-5394-01 9 129853996 129853996 T C ANGPTL2 Missense_Mutation p.N412S 0.47 tolerated(0.09) benign(0.038) TCGA-CS-5394-01 X 40572233 40572233 T C MED14 Silent p.G238G 0.71 TCGA-CS-5395-01 10 89711899 89711899 C T PTEN Missense_Mutation p.R173C 0.58 deleterious(0.02) probably_damaging(0.913) TCGA-CS-5395-01 11 47809761 47809761 G A NUP160 Missense_Mutation p.T1240M 0.39 deleterious(0.02) benign(0.026) TCGA-CS-5395-01 12 112888199 112888199 C A PTPN11 Missense_Mutation p.A72D 0.38 deleterious(0.05) probably_damaging(0.993) TCGA-CS-5395-01 14 104380156 104380156 C A C14orf2 Intron 0.50 TCGA-CS-5395-01 14 21821703 21821703 C T SUPT16H Missense_Mutation p.G981D 0.35 tolerated(0.75) benign(0.008) TCGA-CS-5395-01 14 72138006 72138006 G A SIPA1L1 Missense_Mutation p.R809H 0.37 deleterious(0.03) benign(0.017) TCGA-CS-5395-01 16 55705795 55705795 G A SLC6A2 Intron 0.32 TCGA-CS-5395-01 16 75481522 75481522 T G TMEM170A Silent p.T123T 0.36 TCGA-CS-5395-01 17 38955859 38955859 C T KRT28 Missense_Mutation p.R96H 0.03 deleterious(0.01) probably_damaging(0.945) TCGA-CS-5395-01 17 78171904 78171904 C T CARD14 Missense_Mutation p.P534L 0.21 tolerated(0.18) benign(0.01) TCGA-CS-5395-01 18 6961754 6961754 A G LAMA1 Missense_Mutation p.I2486T 0.33 deleterious(0) possibly_damaging(0.517) TCGA-CS-5395-01 19 35804402 35804402 C T MAG 3'UTR 0.14 TCGA-CS-5395-01 19 43358276 43358276 G A PSG10P RNA 0.28 TCGA-CS-5395-01 19 44933647 44933647 C T ZNF229 Missense_Mutation p.E437K 0.33 tolerated(0.14) probably_damaging(0.998) TCGA-CS-5395-01 19 46800337 46800337 G A HIF3A Missense_Mutation p.A2T 0.34 tolerated(0.65) benign(0.255) TCGA-CS-5395-01 19 7964897 7964897 G A LRRC8E Missense_Mutation p.R497H 0.32 tolerated(0.1) probably_damaging(0.984) TCGA-CS-5395-01 1 158226760 158226760 C T CD1A Silent p.R263R 0.40 TCGA-CS-5395-01 1 162741843 162741843 C T DDR2 Missense_Mutation p.P512S 0.43 tolerated(0.32) benign(0.001) TCGA-CS-5395-01 1 228431148 228431148 T C OBSCN Missense_Mutation p.L1157P 0.37 probably_damaging(0.958) TCGA-CS-5395-01 1 43888908 43888908 G A SZT2 Missense_Mutation p.V726M 0.40 tolerated_low_confidence(0.4) benign(0) TCGA-CS-5395-01 1 55638164 55638164 C T USP24 Nonsense_Mutation p.W196* 0.22 TCGA-CS-5395-01 20 10030224 10030224 G A ANKEF1 Missense_Mutation p.R336H 0.30 tolerated(1) benign(0) TCGA-CS-5395-01 20 17410117 17410117 G A PCSK2 Missense_Mutation p.A220T 0.26 deleterious(0.01) benign(0.275) TCGA-CS-5395-01 20 39802386 39802387 - GAAGAA PLCG1 In_Frame_Ins p.E1163_E1164dup 0.33 TCGA-CS-5395-01 21 30302636 30302636 C T LTN1 3'UTR 0.25 TCGA-CS-5395-01 22 38284594 38284594 C A EIF3L 3'UTR 0.07 TCGA-CS-5395-01 2 128411995 128411995 C T LIMS2 Intron 0.34 TCGA-CS-5395-01 2 135745373 135745373 G A MAP3K19 Nonsense_Mutation p.R357* 0.42 TCGA-CS-5395-01 2 238249727 238249727 G A COL6A3 Missense_Mutation p.A2611V 0.38 unknown(0) TCGA-CS-5395-01 2 32422896 32422896 G - SLC30A6 Splice_Site p.X262_splice 0.24 TCGA-CS-5395-01 3 111356923 111356923 T C CD96 Intron 0.32 TCGA-CS-5395-01 3 50225347 50225347 C T SEMA3F Silent p.G719G 0.38 TCGA-CS-5395-01 4 113108220 113108220 A T C4orf32 3'UTR 0.41 TCGA-CS-5395-01 4 148407184 148407184 G T EDNRA Silent p.A117A 0.44 TCGA-CS-5395-01 4 56458328 56458328 C T PDCL2 5'UTR 0.62 TCGA-CS-5395-01 4 647918 647918 C T PDE6B Missense_Mutation p.S301L 0.30 tolerated(0.07) benign(0.027) TCGA-CS-5395-01 5 135610458 135610458 C T TRPC7 Missense_Mutation p.R344H 0.30 deleterious(0.03) benign(0.22) TCGA-CS-5395-01 5 160025790 160025790 C A ATP10B Missense_Mutation p.G1184V 0.41 deleterious(0.02) probably_damaging(1) TCGA-CS-5395-01 5 908507 908507 C T TRIP13 Missense_Mutation p.A266V 0.40 deleterious(0.01) possibly_damaging(0.455) TCGA-CS-5395-01 6 150343339 150343339 C A RAET1L Missense_Mutation p.K42N 0.39 tolerated(0.1) possibly_damaging(0.627) TCGA-CS-5395-01 6 51613287 51613287 C A PKHD1 Missense_Mutation p.V3043L 0.49 tolerated(0.05) possibly_damaging(0.539) TCGA-CS-5395-01 6 51892973 51892973 C A PKHD1 Missense_Mutation p.V1181F 0.37 tolerated(0.19) possibly_damaging(0.563) TCGA-CS-5395-01 6 70866054 70866054 G A COL19A1 Silent p.G705G 0.43 TCGA-CS-5395-01 7 71252834 71252834 C T CALN1 Missense_Mutation p.A238T 0.23 deleterious(0) probably_damaging(0.994) TCGA-CS-5395-01 8 125094698 125094698 A T FER1L6 Missense_Mutation p.I1464L 0.37 tolerated(0.22) benign(0.005) TCGA-CS-5395-01 8 17915037 17915037 G A ASAH1 3'UTR 0.23 TCGA-CS-5395-01 8 20077936 20077936 C T ATP6V1B2 3'UTR 0.30 TCGA-CS-5395-01 8 24346749 24346749 T G ADAM7 Missense_Mutation p.M390R 0.39 deleterious(0) possibly_damaging(0.828) TCGA-CS-5395-01 9 107361264 107361264 A C OR13C5 Missense_Mutation p.M144R 0.07 deleterious(0) possibly_damaging(0.841) TCGA-CS-5395-01 9 107367478 107367478 A C OR13C2 Missense_Mutation p.M144R 0.22 deleterious(0) possibly_damaging(0.782) TCGA-CS-5395-01 9 113217968 113217968 G C SVEP1 Missense_Mutation p.T1230R 0.37 benign(0.066) TCGA-CS-5395-01 9 40701722 40701722 C T SPATA31A3 Missense_Mutation p.R68W 0.30 tolerated(0.15) benign(0) TCGA-CS-5395-01 9 77377508 77377508 G T TRPM6 Missense_Mutation p.T1360N 0.39 tolerated_low_confidence(0.23) benign(0.002) TCGA-CS-5395-01 X 123654451 123654451 C T TENM1 Missense_Mutation p.A1073T 0.81 deleterious(0) probably_damaging(0.975) TCGA-CS-5395-01 X 46943843 46943843 C T RGN Missense_Mutation p.R64C 0.77 tolerated(0.09) possibly_damaging(0.578) TCGA-CS-5396-01 10 121578988 121578988 A G INPP5F Intron 0.50 TCGA-CS-5396-01 10 76788415 76788415 A - KAT6B Frame_Shift_Del p.T1279Hfs*9 0.25 TCGA-CS-5396-01 11 62363998 62363998 A G MTA2 Missense_Mutation p.W297R 0.23 deleterious(0) probably_damaging(0.997) TCGA-CS-5396-01 12 25398306 25398306 T C KRAS Missense_Mutation p.K5E 0.37 deleterious(0.03) possibly_damaging(0.643) TCGA-CS-5396-01 12 54968886 54968886 G A PDE1B Missense_Mutation p.D357N 0.08 deleterious(0.02) possibly_damaging(0.54) TCGA-CS-5396-01 12 93244954 93244954 C T EEA1 Missense_Mutation p.R244H 0.45 deleterious(0.01) possibly_damaging(0.849) TCGA-CS-5396-01 13 107147326 107147326 T A EFNB2 Silent p.G172G 0.44 TCGA-CS-5396-01 13 32747575 32747575 A C FRY Silent p.V741V 0.16 TCGA-CS-5396-01 14 70839545 70839545 T C SYNJ2BP 3'UTR 0.15 TCGA-CS-5396-01 15 25436445 25436445 T A SNORD115-11 3'Flank 0.52 TCGA-CS-5396-01 16 89986243 89986243 G A MC1R Missense_Mutation p.V193M 0.08 deleterious(0) possibly_damaging(0.532) TCGA-CS-5396-01 17 61972456 61972456 T C CSH1 Missense_Mutation p.K194E 0.41 deleterious(0) probably_damaging(0.976) TCGA-CS-5396-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.28 tolerated(0.13) possibly_damaging(0.631) TCGA-CS-5396-01 19 2810741 2810741 G T THOP1 Missense_Mutation p.E582D 0.31 tolerated(0.22) benign(0.003) TCGA-CS-5396-01 1 11184570 11184570 A G MTOR Missense_Mutation p.L2216P 0.82 deleterious(0.01) possibly_damaging(0.694) TCGA-CS-5396-01 1 114225640 114225640 A G MAGI3 Silent p.E1150E 0.06 TCGA-CS-5396-01 1 149859056 149859056 T A HIST2H2AB 3'UTR 0.15 TCGA-CS-5396-01 1 154306628 154306628 G A ATP8B2 Missense_Mutation p.S245N 0.04 tolerated(0.13) benign(0.156) TCGA-CS-5396-01 1 156268966 156268966 C T VHLL Silent p.A5A 0.07 TCGA-CS-5396-01 21 32617956 32617956 C G TIAM1 Missense_Mutation p.E478Q 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-CS-5396-01 2 152409920 152409920 G A NEB Missense_Mutation p.R6575C 0.54 probably_damaging(0.997) TCGA-CS-5396-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-5396-01 3 14520692 14520692 T C SLC6A6 Missense_Mutation p.V517A 0.35 tolerated(0.35) benign(0.002) TCGA-CS-5396-01 3 30885753 30885753 A G GADL1 Silent p.G245G 0.44 TCGA-CS-5396-01 4 100205754 100205754 G A ADH1A Silent p.T123T 0.36 TCGA-CS-5396-01 4 52945942 52945942 G T SPATA18 Missense_Mutation p.K404N 0.03 deleterious(0) probably_damaging(0.978) TCGA-CS-5396-01 4 89583639 89583639 A G HERC3 Missense_Mutation p.I402V 0.41 tolerated(0.48) probably_damaging(0.977) TCGA-CS-5396-01 6 136935398 136935398 A G MAP3K5 Missense_Mutation p.I726T 0.40 deleterious(0) probably_damaging(0.999) TCGA-CS-5396-01 6 160906846 160906846 C T LPAL2 Intron 0.34 TCGA-CS-5396-01 6 35922951 35922951 C T SLC26A8 Missense_Mutation p.R737Q 0.38 tolerated(0.92) benign(0.016) TCGA-CS-5396-01 6 43193850 43193850 C T DNPH1 Silent p.L99L 0.23 TCGA-CS-5396-01 6 93964475 93964475 T C EPHA7 Missense_Mutation p.I808V 0.46 deleterious(0.03) benign(0.036) TCGA-CS-5396-01 7 25163609 25163609 C A CYCS Missense_Mutation p.A44S 0.23 tolerated(0.06) benign(0.199) TCGA-CS-5396-01 8 37698790 37698790 G T GPR124 Missense_Mutation p.R978S 0.42 tolerated(0.35) possibly_damaging(0.643) TCGA-CS-5396-01 9 90502800 90502800 G A SPATA31E1 Missense_Mutation p.R1133H 0.37 tolerated(0.62) benign(0.074) TCGA-CS-5396-01 X 107406179 107406179 C T COL4A6 Missense_Mutation p.D1388N 0.39 benign(0.043) TCGA-CS-5396-01 X 123680892 123680892 C T TENM1 Missense_Mutation p.C828Y 0.33 deleterious(0) probably_damaging(1) TCGA-CS-5396-01 X 153695648 153695648 G T PLXNA3 Missense_Mutation p.R1092L 0.21 tolerated(0.48) benign(0.001) TCGA-CS-5396-01 X 22095667 22095667 T A PHEX Silent p.L170L 0.35 TCGA-CS-5397-01 11 123601198 123601198 C A ZNF202 Silent p.R133R 0.29 TCGA-CS-5397-01 11 4159521 4159521 G A RRM1 Missense_Mutation p.V763I 0.24 tolerated_low_confidence(0.3) benign(0.001) TCGA-CS-5397-01 11 48328354 48328354 G T OR4S1 Missense_Mutation p.G194C 0.39 deleterious(0) probably_damaging(0.983) TCGA-CS-5397-01 11 56113589 56113589 C A OR8K1 Missense_Mutation p.D25E 0.22 tolerated_low_confidence(0.07) benign(0.038) TCGA-CS-5397-01 12 117705872 117705872 A G NOS1 Silent p.N639N 0.30 TCGA-CS-5397-01 12 32974416 32974416 G A PKP2 Silent p.G673G 0.23 TCGA-CS-5397-01 12 4553372 4553372 C T FGF6 Missense_Mutation p.G126D 0.32 deleterious(0) probably_damaging(1) TCGA-CS-5397-01 12 8048160 8048160 C G NANOGP1 RNA 0.26 TCGA-CS-5397-01 12 98849433 98849433 C T SLC9A7P1 RNA 0.06 TCGA-CS-5397-01 14 22315244 22315244 A G TRAV8-2 Missense_Mutation p.K61R 0.35 tolerated(0.11) benign(0.009) TCGA-CS-5397-01 15 43714318 43714318 C A TP53BP1 Nonsense_Mutation p.E1279* 0.33 TCGA-CS-5397-01 16 30119725 30119725 G - GDPD3 Frame_Shift_Del p.L246* 0.31 TCGA-CS-5397-01 16 65319330 65319330 G A LINC00922 RNA 0.19 TCGA-CS-5397-01 17 29563007 29563007 G A NF1 Nonsense_Mutation p.W1314* 0.42 TCGA-CS-5397-01 17 31323997 31323997 C A SPACA3 Missense_Mutation p.N160K 0.45 deleterious(0) probably_damaging(0.991) TCGA-CS-5397-01 17 57751005 57751005 C T CLTC Intron 0.14 TCGA-CS-5397-01 17 61957625 61957625 C A GH2 3'UTR 0.32 TCGA-CS-5397-01 17 72480295 72480295 T C CD300A 3'UTR 0.11 TCGA-CS-5397-01 17 7366396 7366398 CTC - ZBTB4 In_Frame_Del p.E635del 0.39 TCGA-CS-5397-01 18 47311703 47311703 G A ACAA2 Missense_Mutation p.P325S 0.16 tolerated(0.19) benign(0.113) TCGA-CS-5397-01 18 61326675 61326675 G A SERPINB3 Silent p.I103I 0.22 TCGA-CS-5397-01 18 8821483 8821483 G A SOGA2 Missense_Mutation p.G1059R 0.23 tolerated(0.09) benign(0.149) TCGA-CS-5397-01 19 17778978 17778978 C A UNC13A Missense_Mutation p.R139L 0.27 tolerated_low_confidence(0.09) possibly_damaging(0.659) TCGA-CS-5397-01 19 36108982 36108982 A G HAUS5 Missense_Mutation p.T236A 0.21 tolerated(0.2) possibly_damaging(0.547) TCGA-CS-5397-01 1 100818540 100818540 G T CDC14A Silent p.G10G 0.27 TCGA-CS-5397-01 1 12711261 12711261 G A AADACL4 Silent p.T96T 0.37 TCGA-CS-5397-01 1 2411404 2411404 G A PLCH2 Missense_Mutation p.R141H 0.28 deleterious(0) probably_damaging(0.993) TCGA-CS-5397-01 1 33745746 33745746 C T ZNF362 Missense_Mutation p.T124I 0.17 deleterious(0.03) benign(0.109) TCGA-CS-5397-01 1 57756661 57756661 G A DAB1 Silent p.S14S 0.27 TCGA-CS-5397-01 20 33657162 33657162 C A TRPC4AP Missense_Mutation p.R117S 0.12 tolerated(0.2) benign(0.084) TCGA-CS-5397-01 20 57829784 57829784 G A ZNF831 Missense_Mutation p.V1674I 0.15 deleterious(0) possibly_damaging(0.458) TCGA-CS-5397-01 2 198273241 198273241 A G SF3B1 Silent p.I323I 0.28 TCGA-CS-5397-01 2 68620306 68620306 A G PLEK Missense_Mutation p.K259E 0.28 deleterious(0) probably_damaging(0.999) TCGA-CS-5397-01 2 69409664 69409664 A G ANTXR1 Missense_Mutation p.K409E 0.32 deleterious(0) probably_damaging(0.999) TCGA-CS-5397-01 3 87027678 87027678 C T VGLL3 Missense_Mutation p.R134Q 0.24 deleterious(0.01) possibly_damaging(0.89) TCGA-CS-5397-01 4 162463805 162463805 T C FSTL5 Silent p.R352R 0.30 TCGA-CS-5397-01 4 619541 619541 G A PDE6B Silent p.P42P 0.32 TCGA-CS-5397-01 4 85612794 85612794 T A WDFY3 Missense_Mutation p.E3065V 0.35 deleterious(0) benign(0.397) TCGA-CS-5397-01 5 13923478 13923478 C T DNAH5 Missense_Mutation p.E117K 0.33 benign(0.305) TCGA-CS-5397-01 5 140431875 140431875 A - PCDHB1 Frame_Shift_Del p.N274Tfs*4 0.16 TCGA-CS-5397-01 5 151771639 151771639 A G NMUR2 3'UTR 0.35 TCGA-CS-5397-01 5 161580182 161580182 C T GABRG2 Silent p.Y452Y 0.05 TCGA-CS-5397-01 5 41055887 41055887 T A MROH2B Silent p.R330R 0.31 TCGA-CS-5397-01 6 150289853 150289853 T A ULBP1 Missense_Mutation p.C66S 0.47 deleterious(0) probably_damaging(0.998) TCGA-CS-5397-01 7 142637545 142637545 G A C7orf34 Silent p.T105T 0.20 TCGA-CS-5397-01 7 151945104 151945104 A T KMT2C Missense_Mutation p.S805R 0.06 benign(0.066) TCGA-CS-5397-01 7 71252675 71252675 G A CALN1 3'UTR 0.24 TCGA-CS-5397-01 8 18725328 18725328 G C PSD3 Nonsense_Mutation p.S497* 0.28 TCGA-CS-5397-01 9 114246646 114246646 A C KIAA0368 Silent p.P89P 0.27 TCGA-CS-5397-01 9 35714763 35714763 G C TLN1 Missense_Mutation p.S955R 0.05 tolerated(0.11) benign(0.368) TCGA-CS-5397-01 9 96326729 96326729 C T FAM120A Silent p.C1088C 0.06 TCGA-CS-5397-01 X 15682843 15682843 G C TMEM27 Missense_Mutation p.P19R 0.33 deleterious(0.03) probably_damaging(0.953) TCGA-CS-5397-01 X 20044027 20044027 G A MAP7D2 Missense_Mutation p.P351S 0.29 tolerated(0.06) benign(0.343) TCGA-CS-5397-01 X 31747756 31747756 G A DMD Missense_Mutation p.T2551M 0.30 possibly_damaging(0.897) TCGA-CS-5397-01 X 39932304 39932304 G A BCOR Silent p.S765S 0.32 TCGA-CS-5397-01 X 47308566 47308566 G T ZNF41 Missense_Mutation p.N201K 0.28 tolerated(0.52) benign(0.005) TCGA-CS-5397-01 X 50094756 50094756 C T CCNB3 3'UTR 0.32 TCGA-CS-5397-01 X 91134309 91134309 T - PCDH11X Intron 0.23 TCGA-CS-6186-01 10 104233397 104233397 C T TMEM180 Silent p.Y332Y 0.61 TCGA-CS-6186-01 10 92678671 92678671 A G ANKRD1 Missense_Mutation p.V135A 0.50 deleterious(0.01) possibly_damaging(0.872) TCGA-CS-6186-01 11 1271606 1271606 C T MUC5B Missense_Mutation p.S4499F 0.40 benign(0.001) TCGA-CS-6186-01 11 15133995 15133995 G A INSC 5'UTR 0.48 TCGA-CS-6186-01 11 55761801 55761801 T A OR5F1 Missense_Mutation p.M101L 0.34 tolerated(0.58) benign(0.005) TCGA-CS-6186-01 11 72289381 72289381 C T PDE2A Silent p.E837E 0.42 TCGA-CS-6186-01 11 74800020 74800020 T A OR2AT4 Missense_Mutation p.S247C 0.40 deleterious(0.03) possibly_damaging(0.897) TCGA-CS-6186-01 12 14809526 14809526 G A GUCY2C Missense_Mutation p.R464C 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-CS-6186-01 12 33031888 33031888 C T PKP2 Missense_Mutation p.R101H 0.07 tolerated(0.6) benign(0.009) TCGA-CS-6186-01 12 7477158 7477158 G A ACSM4 Silent p.S500S 0.31 TCGA-CS-6186-01 13 37569684 37569684 C T ALG5 Missense_Mutation p.R39Q 0.27 tolerated(0.08) benign(0.057) TCGA-CS-6186-01 14 95932397 95932397 C T SYNE3 Silent p.Q166Q 0.39 TCGA-CS-6186-01 15 102346763 102346763 G A OR4F6 Missense_Mutation p.V281I 0.42 tolerated_low_confidence(0.27) benign(0.002) TCGA-CS-6186-01 15 40558146 40558146 G A PAK6 Missense_Mutation p.R103H 0.23 tolerated(0.17) benign(0.003) TCGA-CS-6186-01 15 50223421 50223421 G A ATP8B4 Missense_Mutation p.R513W 0.40 deleterious(0) probably_damaging(0.976) TCGA-CS-6186-01 15 52622646 52622646 G A MYO5A Nonsense_Mutation p.R1462* 0.44 TCGA-CS-6186-01 16 28995597 28995597 C T SPNS1 Missense_Mutation p.P522S 0.31 deleterious(0.05) benign(0.408) TCGA-CS-6186-01 16 71570880 71570880 C T CHST4 Silent p.A100A 0.39 TCGA-CS-6186-01 17 40040509 40040509 G C ACLY Missense_Mutation p.F697L 0.42 tolerated(0.13) benign(0.333) TCGA-CS-6186-01 17 46670842 46670842 G A HOXB5 Missense_Mutation p.A68V 0.27 tolerated(0.14) benign(0.076) TCGA-CS-6186-01 17 48270361 48270361 G A COL1A1 Silent p.G605G 0.24 TCGA-CS-6186-01 17 48616618 48616618 G A EPN3 Missense_Mutation p.R278Q 0.35 tolerated(0.25) benign(0.001) TCGA-CS-6186-01 19 17329120 17329120 C T USE1 Intron 0.32 TCGA-CS-6186-01 19 47935494 47935494 G A SLC8A2 Silent p.F773F 0.16 TCGA-CS-6186-01 19 50750373 50750373 G A MYH14 Silent p.K441K 0.25 TCGA-CS-6186-01 19 54876430 54876430 G A LAIR1 5'UTR 0.28 TCGA-CS-6186-01 19 56244617 56244617 C T NLRP9 Missense_Mutation p.A194T 0.12 tolerated(1) benign(0.004) TCGA-CS-6186-01 1 169698637 169698637 G A SELE Missense_Mutation p.T298M 0.51 tolerated(0.14) benign(0.149) TCGA-CS-6186-01 1 201047161 201047161 G A CACNA1S Missense_Mutation p.R489C 0.42 deleterious(0.01) possibly_damaging(0.849) TCGA-CS-6186-01 1 216251647 216251647 G A USH2A Nonsense_Mutation p.Q1786* 0.41 TCGA-CS-6186-01 1 53553886 53553886 C T SLC1A7 Missense_Mutation p.C493Y 0.31 tolerated(0.2) benign(0.018) TCGA-CS-6186-01 20 25057044 25057044 A C VSX1 Silent p.P317P 0.34 TCGA-CS-6186-01 20 44180556 44180556 T G WFDC8 Intron 0.20 TCGA-CS-6186-01 20 4850643 4850643 C T SLC23A2 Missense_Mutation p.V387M 0.35 deleterious(0) possibly_damaging(0.748) TCGA-CS-6186-01 22 18604328 18604328 G A TUBA8 Missense_Mutation p.G29D 0.07 deleterious_low_confidence(0.03) benign(0.231) TCGA-CS-6186-01 22 23114963 23114963 C T IGLV3-12 Nonsense_Mutation p.R79* 0.42 TCGA-CS-6186-01 2 11725320 11725320 G A GREB1 Missense_Mutation p.R312H 0.54 deleterious(0) probably_damaging(0.998) TCGA-CS-6186-01 2 169764413 169764413 T G G6PC2 Missense_Mutation p.L298V 0.36 tolerated(1) benign(0) TCGA-CS-6186-01 2 179453437 179453437 C T TTN Silent p.K21005K 0.05 TCGA-CS-6186-01 2 18113040 18113040 G A KCNS3 Silent p.L255L 0.43 TCGA-CS-6186-01 2 231774733 231774733 C T GPR55 Silent p.T315T 0.45 TCGA-CS-6186-01 2 238275437 238275437 C T COL6A3 Missense_Mutation p.R1798H 0.37 probably_damaging(0.993) TCGA-CS-6186-01 2 241631307 241631307 C G AQP12A 5'UTR 0.37 TCGA-CS-6186-01 2 27016113 27016113 G A CENPA Missense_Mutation p.R130Q 0.33 deleterious(0.03) possibly_damaging(0.582) TCGA-CS-6186-01 3 39179140 39179140 G C TTC21A Missense_Mutation p.C1212S 0.24 deleterious(0.01) benign(0.046) TCGA-CS-6186-01 3 4819013 4819013 C A ITPR1 Silent p.I2067I 0.40 TCGA-CS-6186-01 5 141028985 141028985 C T FCHSD1 Missense_Mutation p.A118T 0.32 tolerated(0.2) possibly_damaging(0.604) TCGA-CS-6186-01 5 141335542 141335542 A T PCDH12 Missense_Mutation p.D625E 0.38 deleterious(0) probably_damaging(1) TCGA-CS-6186-01 5 148411245 148411245 C T SH3TC2 Missense_Mutation p.R336K 0.52 tolerated(1) benign(0.001) TCGA-CS-6186-01 5 153056693 153056693 G A GRIA1 Missense_Mutation p.G344E 0.25 deleterious(0) probably_damaging(1) TCGA-CS-6186-01 5 167671581 167671581 G A TENM2 Missense_Mutation p.V1893M 0.44 deleterious(0) probably_damaging(0.954) TCGA-CS-6186-01 5 50689551 50689551 A C ISL1 3'UTR 0.50 TCGA-CS-6186-01 5 90136725 90136725 C T GPR98 Missense_Mutation p.L5648F 0.40 possibly_damaging(0.86) TCGA-CS-6186-01 6 112469437 112469437 G C LAMA4 Missense_Mutation p.L759V 0.80 tolerated(1) benign(0.026) TCGA-CS-6186-01 6 170144257 170144257 C T TCTE3 Silent p.L78L 0.42 TCGA-CS-6186-01 6 32906668 32906668 T G HLA-DMB Missense_Mutation p.I44L 0.30 tolerated(0.58) benign(0.014) TCGA-CS-6186-01 7 107616242 107616242 C T LAMB1 Missense_Mutation p.V361M 0.29 deleterious(0) probably_damaging(0.992) TCGA-CS-6186-01 7 5567243 5567243 C T ACTB 3'UTR 0.35 TCGA-CS-6186-01 7 95657632 95657632 C T DYNC1I1 Missense_Mutation p.T389M 0.30 deleterious(0) probably_damaging(0.999) TCGA-CS-6186-01 8 131149272 131149272 G T ASAP1 Missense_Mutation p.P365T 0.42 deleterious(0.01) probably_damaging(0.994) TCGA-CS-6186-01 8 25198440 25198440 G A DOCK5 Missense_Mutation p.R792H 0.50 deleterious(0.04) possibly_damaging(0.899) TCGA-CS-6186-01 9 125289214 125289214 C T OR1N1 Missense_Mutation p.R120H 0.12 deleterious(0.04) benign(0.028) TCGA-CS-6186-01 9 131022430 131022430 C T GOLGA2 Silent p.S572S 0.39 TCGA-CS-6186-01 9 72724721 72724721 G A MAMDC2 Splice_Site p.X169_splice 0.47 TCGA-CS-6186-01 X 134706886 134706886 G T DDX26B Silent p.G478G 0.78 TCGA-CS-6186-01 X 142795437 142795437 C T SPANXN2 Missense_Mutation p.V81I 0.90 tolerated(0.85) benign(0.1) TCGA-CS-6186-01 X 34961315 34961315 G T FAM47B Missense_Mutation p.A123S 0.63 deleterious(0.01) possibly_damaging(0.491) TCGA-CS-6186-01 X 35820491 35820491 A T MAGEB16 Missense_Mutation p.S60C 0.90 deleterious(0.01) benign(0.212) TCGA-CS-6186-01 Y 24050161 24050161 G - RBMY1E Frame_Shift_Del p.P458Lfs*23 0.15 TCGA-CS-6186-01 Y 4924804 4924804 T A PCDH11Y 5'UTR 0.73 TCGA-CS-6188-01 10 91498265 91498265 C T KIF20B Missense_Mutation p.L1183F 0.40 tolerated(0.19) benign(0.005) TCGA-CS-6188-01 11 118941054 118941054 C T VPS11 Missense_Mutation p.R194C 0.35 deleterious(0) probably_damaging(0.939) TCGA-CS-6188-01 11 67287316 67287316 G A CABP2 Silent p.D195D 0.23 TCGA-CS-6188-01 12 8083869 8083869 C T SLC2A3 Missense_Mutation p.G161D 0.20 deleterious(0) probably_damaging(0.982) TCGA-CS-6188-01 12 95228505 95228505 G A MIR492 3'Flank 0.62 TCGA-CS-6188-01 13 92101015 92101015 G T GPC5 Missense_Mutation p.G55V 0.31 deleterious(0.05) probably_damaging(0.997) TCGA-CS-6188-01 14 23550990 23550990 C T ACIN1 Silent p.R222R 0.33 TCGA-CS-6188-01 14 96875258 96875258 C T AK7 Missense_Mutation p.R160C 0.06 tolerated(0.09) possibly_damaging(0.677) TCGA-CS-6188-01 15 20644046 20644046 G A HERC2P3 RNA 0.42 TCGA-CS-6188-01 15 42371771 42371771 C G PLA2G4D Silent p.L427L 0.38 TCGA-CS-6188-01 16 31123667 31123667 C T BCKDK 3'UTR 0.15 TCGA-CS-6188-01 16 80646582 80646582 G A CDYL2 Missense_Mutation p.R387C 0.29 deleterious(0.03) probably_damaging(0.939) TCGA-CS-6188-01 17 12656007 12656007 G A MYOCD Missense_Mutation p.A468T 0.34 tolerated(0.27) benign(0.016) TCGA-CS-6188-01 17 2601443 2601443 G A CLUH Missense_Mutation p.R532W 0.27 deleterious(0.01) possibly_damaging(0.901) TCGA-CS-6188-01 17 79657241 79657241 G A HGS Missense_Mutation p.D149N 0.35 deleterious(0) benign(0.105) TCGA-CS-6188-01 19 2852903 2852903 C T ZNF555 Silent p.G280G 0.29 TCGA-CS-6188-01 19 33392199 33392199 T C CEP89 Missense_Mutation p.Q562R 0.20 tolerated(0.4) benign(0) TCGA-CS-6188-01 19 33608853 33608853 A G GPATCH1 Silent p.Q773Q 0.31 TCGA-CS-6188-01 19 55087420 55087420 C G LILRA2 Missense_Mutation p.L367V 0.27 deleterious(0.01) possibly_damaging(0.536) TCGA-CS-6188-01 19 7810483 7810483 C A CD209 Missense_Mutation p.K223N 0.22 tolerated(0.17) benign(0.042) TCGA-CS-6188-01 19 7810552 7810552 C A CD209 Missense_Mutation p.K200N 0.03 deleterious(0.01) probably_damaging(0.989) TCGA-CS-6188-01 1 120502127 120502127 T C NOTCH2 Splice_Site p.X639_splice 0.25 TCGA-CS-6188-01 1 154062057 154062057 C T NUP210L Missense_Mutation p.R734Q 0.37 tolerated(0.21) benign(0.023) TCGA-CS-6188-01 1 1588852 1588852 C G CDK11B Missense_Mutation p.E28D 0.36 possibly_damaging(0.866) TCGA-CS-6188-01 1 248084419 248084419 T C OR2T8 Silent p.L34L 0.36 TCGA-CS-6188-01 1 248112252 248112252 T C OR2L8 Silent p.V31V 0.32 TCGA-CS-6188-01 1 25167528 25167528 G A CLIC4 3'UTR 0.38 TCGA-CS-6188-01 21 43161015 43161015 G A RIPK4 Missense_Mutation p.R780W 0.32 deleterious_low_confidence(0) possibly_damaging(0.785) TCGA-CS-6188-01 2 234750376 234750376 C G HJURP Missense_Mutation p.K350N 0.34 tolerated(0.06) benign(0.006) TCGA-CS-6188-01 3 185639892 185639892 A C TRA2B Missense_Mutation p.M182R 0.19 deleterious(0.01) benign(0.355) TCGA-CS-6188-01 4 17843981 17843981 C T NCAPG Missense_Mutation p.T968I 0.37 tolerated(0.15) benign(0.001) TCGA-CS-6188-01 4 71096961 71096961 G T FDCSP Missense_Mutation p.G17V 0.32 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-CS-6188-01 5 132159379 132159379 G A SHROOM1 Missense_Mutation p.P630L 0.29 deleterious(0.02) benign(0.434) TCGA-CS-6188-01 5 140188796 140188796 C T PCDHA4 Missense_Mutation p.A675V 0.18 tolerated_low_confidence(0.11) benign(0.005) TCGA-CS-6188-01 5 150704990 150704990 C A SLC36A2 Missense_Mutation p.M289I 0.31 deleterious(0) possibly_damaging(0.513) TCGA-CS-6188-01 5 150922417 150922417 G A FAT2 Silent p.H2757H 0.29 TCGA-CS-6188-01 5 160047525 160047525 G A ATP10B Missense_Mutation p.R749C 0.27 deleterious(0) benign(0.262) TCGA-CS-6188-01 5 33648939 33648939 G A ADAMTS12 Silent p.C489C 0.19 TCGA-CS-6188-01 5 40950097 40950097 C T C7 Silent p.N358N 0.22 TCGA-CS-6188-01 5 67589632 67589634 ATT - PIK3R1 In_Frame_Del p.L466del 0.28 TCGA-CS-6188-01 6 108768486 108768486 A G LACE1 Missense_Mutation p.K293E 0.37 deleterious(0.02) benign(0.03) TCGA-CS-6188-01 6 29693049 29693049 C T HLA-F Silent p.H284H 0.26 TCGA-CS-6188-01 6 49701500 49701500 G C CRISP3 Missense_Mutation p.I136M 0.33 deleterious(0.02) probably_damaging(0.981) TCGA-CS-6188-01 6 70048901 70048901 C T BAI3 Silent p.N1094N 0.25 TCGA-CS-6188-01 6 7571618 7571618 G A DSP Silent p.L568L 0.35 TCGA-CS-6188-01 6 7571689 7571689 G A DSP Missense_Mutation p.R592K 0.35 benign(0.001) TCGA-CS-6188-01 7 102574365 102574365 G A LRRC17 Missense_Mutation p.R2H 0.38 tolerated(0.16) possibly_damaging(0.507) TCGA-CS-6188-01 7 103338477 103338477 C T RELN Silent p.E322E 0.27 TCGA-CS-6188-01 7 155567803 155567803 C T RBM33 3'UTR 0.06 TCGA-CS-6188-01 7 94043557 94043557 C T COL1A2 Silent p.P563P 0.19 TCGA-CS-6188-01 8 139158292 139158292 C - FAM135B Frame_Shift_Del p.N1151Tfs*8 0.20 TCGA-CS-6188-01 8 144942253 144942253 G A EPPK1 Silent p.D1723D 0.35 TCGA-CS-6188-01 8 37729419 37729419 C T RAB11FIP1 Silent p.S967S 0.31 TCGA-CS-6188-01 9 137998621 137998621 G A OLFM1 Missense_Mutation p.D217N 0.26 tolerated(0.58) probably_damaging(0.945) TCGA-CS-6290-01 11 59132638 59132638 C A OR5AN1 Missense_Mutation p.S236Y 0.05 tolerated(0.49) possibly_damaging(0.905) TCGA-CS-6290-01 12 113447044 113447044 C T OAS2 Missense_Mutation p.P683L 0.04 deleterious(0.04) possibly_damaging(0.476) TCGA-CS-6290-01 15 64716294 64716294 A T TRIP4 Nonsense_Mutation p.K475* 0.31 TCGA-CS-6290-01 16 68405893 68405893 C A SMPD3 Silent p.T64T 0.15 TCGA-CS-6290-01 17 10432154 10432154 C G MYH2 Missense_Mutation p.R1199S 0.05 deleterious(0) probably_damaging(0.983) TCGA-CS-6290-01 17 33475300 33475300 G A UNC45B Silent p.A6A 0.32 TCGA-CS-6290-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.57 deleterious(0) probably_damaging(1) TCGA-CS-6290-01 19 10468453 10468453 C T TYK2 Missense_Mutation p.R818H 0.47 tolerated(0.19) benign(0.082) TCGA-CS-6290-01 19 38954131 38954131 G A RYR1 Silent p.A882A 0.11 TCGA-CS-6290-01 19 49954795 49954795 C A PIH1D1 Nonsense_Mutation p.E13* 0.29 TCGA-CS-6290-01 19 7686177 7686177 C T XAB2 Missense_Mutation p.E542K 0.23 deleterious(0) possibly_damaging(0.7) TCGA-CS-6290-01 1 110170831 110170831 C T AMPD2 Missense_Mutation p.R457W 0.39 deleterious(0) possibly_damaging(0.732) TCGA-CS-6290-01 1 207648381 207648381 C T CR2 Missense_Mutation p.R846C 0.27 tolerated(0.09) benign(0.443) TCGA-CS-6290-01 1 24447958 24447958 G A IL22RA1 Silent p.N354N 0.40 TCGA-CS-6290-01 1 3740070 3740070 G A CEP104 Silent p.D807D 0.34 TCGA-CS-6290-01 1 55523126 55523126 C T PCSK9 Silent p.S373S 0.21 TCGA-CS-6290-01 20 18139760 18139760 C T CSRP2BP Missense_Mutation p.A178V 0.31 deleterious(0) probably_damaging(0.998) TCGA-CS-6290-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-6290-01 3 101576203 101576203 C A NFKBIZ Missense_Mutation p.A668D 0.08 deleterious(0) probably_damaging(0.986) TCGA-CS-6290-01 3 71096104 71096104 G A FOXP1 Missense_Mutation p.P220L 0.05 deleterious(0.02) possibly_damaging(0.713) TCGA-CS-6290-01 4 106474027 106474027 C A ARHGEF38 Missense_Mutation p.D35E 0.07 tolerated(0.05) benign(0.022) TCGA-CS-6290-01 4 156831281 156831281 A T TDO2 Missense_Mutation p.H179L 0.08 deleterious(0.01) possibly_damaging(0.903) TCGA-CS-6290-01 4 185679015 185679015 C G ACSL1 Missense_Mutation p.K614N 0.05 tolerated(0.11) benign(0.011) TCGA-CS-6290-01 6 27925799 27925799 C T OR2B6 Nonsense_Mutation p.Q261* 0.15 TCGA-CS-6290-01 6 31778479 31778479 G T HSPA1L Missense_Mutation p.T424N 0.12 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CS-6290-01 6 63990534 63990534 A G LGSN Missense_Mutation p.F308L 0.15 tolerated(0.52) benign(0.004) TCGA-CS-6665-01 11 116707048 116707048 C T APOA1 Missense_Mutation p.E94K 0.21 deleterious(0.03) possibly_damaging(0.777) TCGA-CS-6665-01 11 49207240 49207240 T C FOLH1 Silent p.T269T 0.28 TCGA-CS-6665-01 11 55563532 55563532 G T OR5D14 Silent p.R167R 0.16 TCGA-CS-6665-01 11 56468417 56468417 A G OR9G1 Missense_Mutation p.E185G 0.17 deleterious(0.02) benign(0.063) TCGA-CS-6665-01 12 66638280 66638280 T C IRAK3 Missense_Mutation p.L301S 0.24 deleterious(0) probably_damaging(1) TCGA-CS-6665-01 12 91449807 91449807 T C KERA Silent p.E84E 0.13 TCGA-CS-6665-01 12 94975589 94975589 G A TMCC3 Silent p.N268N 0.19 TCGA-CS-6665-01 13 109318372 109318372 G A MYO16 Missense_Mutation p.R34H 0.22 tolerated(0.08) benign(0.221) TCGA-CS-6665-01 13 26411309 26411309 C A ATP8A2 Silent p.T921T 0.34 TCGA-CS-6665-01 15 40914116 40914116 T C CASC5 Missense_Mutation p.S578P 0.17 tolerated(0.17) benign(0.242) TCGA-CS-6665-01 15 43695930 43695930 C T TUBGCP4 Missense_Mutation p.S594L 0.52 tolerated(0.15) benign(0.016) TCGA-CS-6665-01 15 51260560 51260560 T G AP4E1 Missense_Mutation p.L651R 0.29 deleterious(0.04) probably_damaging(0.921) TCGA-CS-6665-01 16 20635526 20635526 G A ACSM1 Silent p.A513A 0.23 TCGA-CS-6665-01 16 77401350 77401350 G A ADAMTS18 Nonsense_Mutation p.R256* 0.20 TCGA-CS-6665-01 17 40140910 40140910 G A DNAJC7 Missense_Mutation p.A253V 0.36 deleterious(0.04) benign(0.074) TCGA-CS-6665-01 17 61987091 61987091 C T CSHL1 Missense_Mutation p.E217K 0.38 deleterious(0.02) probably_damaging(0.969) TCGA-CS-6665-01 17 7577105 7577105 G - TP53 Frame_Shift_Del p.P278Lfs*67 0.45 TCGA-CS-6665-01 17 7643864 7643864 C T DNAH2 Silent p.R501R 0.13 TCGA-CS-6665-01 17 76967757 76967757 C T LGALS3BP Silent p.S553S 0.33 TCGA-CS-6665-01 18 21489195 21489195 A G LAMA3 Missense_Mutation p.N2365S 0.14 probably_damaging(1) TCGA-CS-6665-01 18 2891806 2891806 C - EMILIN2 Frame_Shift_Del p.P561Lfs*23 0.22 TCGA-CS-6665-01 18 29433858 29433858 G C TRAPPC8 Missense_Mutation p.S1129R 0.18 deleterious(0) probably_damaging(0.999) TCGA-CS-6665-01 18 30254509 30254509 G C KLHL14 3'UTR 0.29 TCGA-CS-6665-01 18 61387343 61387343 A T SERPINB11 Missense_Mutation p.K191I 0.19 deleterious(0.01) possibly_damaging(0.861) TCGA-CS-6665-01 19 10334891 10334891 G A S1PR2 Silent p.L231L 0.29 TCGA-CS-6665-01 19 37676803 37676803 C T ZNF585B Missense_Mutation p.G546R 0.15 deleterious(0.02) probably_damaging(1) TCGA-CS-6665-01 19 40368357 40368357 C T FCGBP Missense_Mutation p.A4331T 0.10 possibly_damaging(0.545) TCGA-CS-6665-01 19 49539990 49539990 C G CGB1 5'UTR 0.29 TCGA-CS-6665-01 19 54299148 54299148 C G NLRP12 Silent p.R1021R 0.11 TCGA-CS-6665-01 1 152284263 152284263 G A FLG Silent p.H1033H 0.19 TCGA-CS-6665-01 1 153122438 153122438 G A SPRR2G Missense_Mutation p.P50L 0.17 unknown(0) TCGA-CS-6665-01 1 160811431 160811431 C A CD244 Nonsense_Mutation p.E108* 0.20 TCGA-CS-6665-01 1 165398112 165398112 A C RXRG Missense_Mutation p.D47E 0.07 tolerated_low_confidence(0.56) benign(0.001) TCGA-CS-6665-01 1 169697059 169697059 C T SELE Missense_Mutation p.C430Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-CS-6665-01 1 184695449 184695449 T C EDEM3 Silent p.A229A 0.18 TCGA-CS-6665-01 1 228404888 228404888 C T OBSCN Missense_Mutation p.T851M 0.12 possibly_damaging(0.67) TCGA-CS-6665-01 1 236341829 236341829 C T GPR137B Nonsense_Mutation p.R194* 0.26 TCGA-CS-6665-01 1 237804239 237804239 C G RYR2 Missense_Mutation p.N2386K 0.13 possibly_damaging(0.669) TCGA-CS-6665-01 1 4832380 4832380 C T AJAP1 Missense_Mutation p.R320W 0.13 deleterious(0.03) possibly_damaging(0.835) TCGA-CS-6665-01 1 8390428 8390428 C T SLC45A1 Missense_Mutation p.P292L 0.48 deleterious(0.01) probably_damaging(0.909) TCGA-CS-6665-01 1 87369113 87369113 C A SEP15 Nonsense_Mutation p.E32* 0.38 TCGA-CS-6665-01 1 9794036 9794036 A C CLSTN1 Missense_Mutation p.F759V 0.17 tolerated(0.19) benign(0.003) TCGA-CS-6665-01 20 17446133 17446133 G T PCSK2 Missense_Mutation p.M455I 0.13 deleterious(0.03) benign(0.012) TCGA-CS-6665-01 22 37705324 37705326 CTT - CYTH4 In_Frame_Del p.F258del 0.45 TCGA-CS-6665-01 2 151326607 151326607 G A RND3 Missense_Mutation p.S210L 0.21 deleterious(0.01) benign(0.003) TCGA-CS-6665-01 2 207169761 207169761 C T ZDBF2 Missense_Mutation p.A170V 0.20 tolerated(0.06) possibly_damaging(0.483) TCGA-CS-6665-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-6665-01 2 231367785 231367785 A G SP100 Silent p.R575R 0.17 TCGA-CS-6665-01 2 60679728 60679728 C T BCL11A 3'Flank 0.24 TCGA-CS-6665-01 3 49691512 49691512 C T BSN Missense_Mutation p.T1508M 0.12 unknown(0) TCGA-CS-6665-01 3 49694614 49694614 C T BSN Missense_Mutation p.T2542M 0.24 unknown(0) TCGA-CS-6665-01 3 50645154 50645154 G A CISH Missense_Mutation p.R238C 0.18 deleterious(0.01) possibly_damaging(0.764) TCGA-CS-6665-01 3 54596855 54596855 G T CACNA2D3 Missense_Mutation p.W191C 0.20 deleterious(0.02) probably_damaging(1) TCGA-CS-6665-01 4 120107411 120107411 A G MYOZ2 3'UTR 0.38 TCGA-CS-6665-01 4 120214081 120214081 T A USP53 Missense_Mutation p.D979E 0.15 tolerated_low_confidence(0.75) benign(0.002) TCGA-CS-6665-01 4 121698363 121698363 A C PRDM5 Missense_Mutation p.V506G 0.19 tolerated(0.1) possibly_damaging(0.799) TCGA-CS-6665-01 4 25849135 25849135 T C SEL1L3 Missense_Mutation p.I172V 0.12 tolerated(0.32) benign(0.008) TCGA-CS-6665-01 4 77661578 77661578 C T SHROOM3 Missense_Mutation p.P751L 0.13 tolerated(0.16) benign(0.028) TCGA-CS-6665-01 4 79400621 79400621 T G FRAS1 Missense_Mutation p.F2731C 0.27 possibly_damaging(0.877) TCGA-CS-6665-01 5 172755331 172755331 G T STC2 5'UTR 0.40 TCGA-CS-6665-01 6 109764076 109764076 C T SMPD2 Missense_Mutation p.R205W 0.06 deleterious(0.01) benign(0.246) TCGA-CS-6665-01 6 130761742 130761742 T C TMEM200A Missense_Mutation p.S59P 0.41 deleterious(0) probably_damaging(0.999) TCGA-CS-6665-01 6 13977167 13977167 C T RNF182 5'UTR 0.52 TCGA-CS-6665-01 6 1726688 1726688 C T GMDS Missense_Mutation p.V317M 0.16 deleterious_low_confidence(0) possibly_damaging(0.719) TCGA-CS-6665-01 6 32049264 32049264 G A RNA5SP206 5'Flank 0.17 TCGA-CS-6665-01 6 46826760 46826760 C T GPR116 Silent p.R960R 0.13 TCGA-CS-6665-01 6 86203685 86203685 T C NT5E Missense_Mutation p.L563P 0.12 deleterious(0) benign(0.014) TCGA-CS-6665-01 6 87725427 87725427 C A HTR1E Silent p.T125T 0.12 TCGA-CS-6665-01 6 89563379 89563379 C T RNGTT Missense_Mutation p.R334H 0.11 tolerated(0.2) benign(0.001) TCGA-CS-6665-01 7 114282537 114282537 G A FOXP2 Missense_Mutation p.G308D 0.37 tolerated(0.21) unknown(0) TCGA-CS-6665-01 7 116960776 116960776 C T WNT2 Missense_Mutation p.R52Q 0.23 tolerated(0.11) probably_damaging(0.994) TCGA-CS-6665-01 7 134212705 134212705 C T AKR1B10 Silent p.P14P 0.17 TCGA-CS-6665-01 7 57187713 57187713 C T ZNF479 Missense_Mutation p.C470Y 0.21 deleterious(0) possibly_damaging(0.871) TCGA-CS-6665-01 7 96810539 96810539 A T ACN9 3'UTR 0.15 TCGA-CS-6665-01 8 22107627 22107627 C A POLR3D Missense_Mutation p.L321M 0.38 tolerated(0.05) probably_damaging(0.983) TCGA-CS-6665-01 8 25154057 25154057 G C DOCK5 Missense_Mutation p.D167H 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-CS-6665-01 8 32600199 32600199 A T NRG1 Silent p.P213P 0.16 TCGA-CS-6665-01 8 41543690 41543690 C T ANK1 Missense_Mutation p.R1498H 0.26 deleterious(0.01) possibly_damaging(0.653) TCGA-CS-6665-01 8 62371030 62371030 C T CLVS1 Silent p.S302S 0.29 TCGA-CS-6665-01 9 137591840 137591840 C T COL5A1 Silent p.N121N 0.19 TCGA-CS-6665-01 X 109459855 109459855 A G AMMECR1 Missense_Mutation p.L197P 0.17 deleterious(0) probably_damaging(0.979) TCGA-CS-6665-01 X 12838861 12838861 C T PRPS2 Missense_Mutation p.A271V 0.22 tolerated(0.14) possibly_damaging(0.595) TCGA-CS-6665-01 X 18660177 18660177 C T RS1 Missense_Mutation p.V208I 0.28 tolerated(0.24) possibly_damaging(0.577) TCGA-CS-6665-01 X 24830876 24830876 G A POLA1 Silent p.L1058L 0.30 TCGA-CS-6665-01 X 2799186 2799186 C T GYG2 Missense_Mutation p.R480C 0.18 deleterious(0.04) probably_damaging(0.911) TCGA-CS-6665-01 X 34962025 34962025 C T FAM47B Silent p.D359D 0.26 TCGA-CS-6665-01 X 47487019 47487019 C A CFP Missense_Mutation p.W142L 0.28 deleterious(0) probably_damaging(1) TCGA-CS-6665-01 X 54209051 54209051 G A FAM120C Missense_Mutation p.A194V 0.30 tolerated(0.61) benign(0.06) TCGA-CS-6665-01 X 55514135 55514135 G A USP51 Missense_Mutation p.S413L 0.23 tolerated(0.24) benign(0.008) TCGA-CS-6665-01 X 73963361 73963361 G T KIAA2022 Missense_Mutation p.T344N 0.18 tolerated(1) benign(0.006) TCGA-CS-6666-01 10 4884665 4884665 T C AKR1E2 Missense_Mutation p.I269T 0.03 deleterious(0.03) benign(0.026) TCGA-CS-6666-01 11 113860592 113860592 A G HTR3A 3'UTR 0.21 TCGA-CS-6666-01 11 6806340 6806340 T C OR2AG1 Silent p.P24P 0.04 TCGA-CS-6666-01 12 69080812 69080812 C G NUP107 5'UTR 0.05 TCGA-CS-6666-01 12 70965783 70965783 T G PTPRB Missense_Mutation p.D976A 0.03 deleterious(0.01) possibly_damaging(0.897) TCGA-CS-6666-01 12 7649700 7649700 C A CD163 Missense_Mutation p.D270Y 0.04 deleterious(0.01) possibly_damaging(0.869) TCGA-CS-6666-01 16 81641214 81641214 G T CMIP Nonsense_Mutation p.E115* 0.04 TCGA-CS-6666-01 17 39502881 39502881 G A KRT33A Missense_Mutation p.R306C 0.06 deleterious(0.03) benign(0.248) TCGA-CS-6666-01 17 39520186 39520186 C T KRT33B Missense_Mutation p.A373T 0.06 tolerated(0.1) benign(0.009) TCGA-CS-6666-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.31 tolerated(0.11) benign(0.308) TCGA-CS-6666-01 17 7578467 7578467 T G TP53 Missense_Mutation p.T155P 0.50 deleterious(0.01) possibly_damaging(0.888) TCGA-CS-6666-01 18 23865961 23865961 C G TAF4B Missense_Mutation p.T363S 0.03 tolerated(0.33) benign(0.006) TCGA-CS-6666-01 18 51025871 51025871 T C DCC Missense_Mutation p.S1368P 0.42 tolerated(0.35) benign(0.002) TCGA-CS-6666-01 18 71816117 71816117 T C TIMM21 Missense_Mutation p.L25S 0.03 tolerated(0.59) benign(0.01) TCGA-CS-6666-01 19 9058537 9058537 A G MUC16 Missense_Mutation p.S9637P 0.04 unknown(0) TCGA-CS-6666-01 1 214625279 214625279 C G PTPN14 Missense_Mutation p.Q71H 0.06 tolerated(0.3) probably_damaging(0.95) TCGA-CS-6666-01 20 16360692 16360692 C T KIF16B Missense_Mutation p.R652H 0.05 deleterious(0.01) probably_damaging(0.992) TCGA-CS-6666-01 20 35152721 35152721 C T DLGAP4 Missense_Mutation p.R858W 0.06 deleterious(0) probably_damaging(0.998) TCGA-CS-6666-01 20 37547124 37547124 G A PPP1R16B Missense_Mutation p.A507T 0.06 tolerated(0.45) benign(0.002) TCGA-CS-6666-01 21 41496241 41496241 C T DSCAM Missense_Mutation p.A1193T 0.39 deleterious(0) benign(0.305) TCGA-CS-6666-01 21 42845269 42845269 G A TMPRSS2 Silent p.A331A 0.40 TCGA-CS-6666-01 21 45379705 45379705 G A AGPAT3 Missense_Mutation p.R48H 0.13 deleterious(0.01) benign(0.042) TCGA-CS-6666-01 22 40055726 40055726 G A CACNA1I Missense_Mutation p.V825I 0.04 tolerated(0.08) benign(0.312) TCGA-CS-6666-01 22 45689091 45689091 C T UPK3A Missense_Mutation p.P201S 0.08 deleterious(0) probably_damaging(0.928) TCGA-CS-6666-01 2 172586272 172586272 T C DYNC1I2 Missense_Mutation p.I482T 0.07 deleterious(0) possibly_damaging(0.826) TCGA-CS-6666-01 2 186670207 186670207 T C FSIP2 Missense_Mutation p.F5481L 0.04 probably_damaging(0.994) TCGA-CS-6666-01 2 204003429 204003429 G C NBEAL1 Missense_Mutation p.Q1573H 0.09 deleterious(0) possibly_damaging(0.832) TCGA-CS-6666-01 2 206991481 206991481 C G NDUFS1 Missense_Mutation p.D672H 0.09 tolerated(0.34) benign(0.021) TCGA-CS-6666-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-CS-6666-01 2 219299321 219299321 G A VIL1 Missense_Mutation p.A525T 0.46 tolerated(0.23) benign(0) TCGA-CS-6666-01 2 27532726 27532726 G A MPV17 3'UTR 0.19 TCGA-CS-6666-01 2 61149057 61149057 C T REL Missense_Mutation p.A416V 0.12 tolerated(0.3) benign(0.018) TCGA-CS-6666-01 3 32571802 32571802 G A DYNC1LI1 Missense_Mutation p.P387S 0.08 tolerated(0.13) benign(0.1) TCGA-CS-6666-01 4 151505024 151505024 G C MAB21L2 Missense_Mutation p.E281D 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-CS-6666-01 4 156847076 156847076 C G CTSO 3'UTR 0.40 TCGA-CS-6666-01 4 156847189 156847189 C G CTSO Nonstop_Mutation p.*322Sext*12 0.22 TCGA-CS-6666-01 4 169432972 169432972 C A PALLD Missense_Mutation p.A106E 0.07 tolerated(0.78) benign(0.029) TCGA-CS-6666-01 4 77660239 77660239 C T SHROOM3 Missense_Mutation p.R305C 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-CS-6666-01 5 13769245 13769245 C G DNAH5 Missense_Mutation p.V3241L 0.23 benign(0.299) TCGA-CS-6666-01 5 139866584 139866584 T A ANKHD1 Silent p.P728P 0.05 TCGA-CS-6666-01 5 154307077 154307077 A G GEMIN5 Silent p.S316S 0.05 TCGA-CS-6666-01 5 93856210 93856210 T G KIAA0825 Missense_Mutation p.D238A 0.07 deleterious(0.02) benign(0.258) TCGA-CS-6666-01 6 25606448 25606448 G C LRRC16A Missense_Mutation p.S1265T 0.26 tolerated_low_confidence(0.45) benign(0.001) TCGA-CS-6666-01 6 29364925 29364925 G T OR12D2 Missense_Mutation p.G150V 0.08 deleterious(0.01) possibly_damaging(0.611) TCGA-CS-6666-01 6 31698750 31698750 T C CLIC1 Missense_Mutation p.I199V 0.35 deleterious(0.01) possibly_damaging(0.765) TCGA-CS-6666-01 6 46129357 46129357 G A ENPP5 Silent p.L380L 0.07 TCGA-CS-6666-01 7 127014981 127014981 C G ZNF800 Missense_Mutation p.E137Q 0.05 tolerated(1) benign(0.035) TCGA-CS-6666-01 7 141478489 141478489 C G TAS2R4 Missense_Mutation p.I67M 0.07 deleterious(0.03) benign(0.253) TCGA-CS-6666-01 7 87183089 87183089 T C ABCB1 Silent p.G329G 0.42 TCGA-CS-6666-01 8 30889490 30889490 T C PURG Missense_Mutation p.D270G 0.50 tolerated(0.11) probably_damaging(1) TCGA-CS-6666-01 9 26905915 26905915 C T PLAA Missense_Mutation p.R661K 0.09 deleterious(0) probably_damaging(0.999) TCGA-CS-6666-01 X 76919037 76919038 - T ATRX Frame_Shift_Ins p.N1318Kfs*6 0.88 TCGA-CS-6667-01 11 124738751 124738751 G A ROBO3 Missense_Mutation p.D72N 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-CS-6667-01 11 132527046 132527046 C T OPCML Silent p.P112P 0.24 TCGA-CS-6667-01 11 36614246 36614246 G A RAG2 Silent p.P491P 0.36 TCGA-CS-6667-01 13 39454427 39454427 C G FREM2 Missense_Mutation p.L3005V 0.34 tolerated(0.71) benign(0.004) TCGA-CS-6667-01 13 45010892 45010892 G C TSC22D1 Intron 0.16 TCGA-CS-6667-01 14 51713855 51713855 G C TMX1 Missense_Mutation p.K120N 0.44 deleterious(0) probably_damaging(0.921) TCGA-CS-6667-01 15 62302761 62302776 CATGTAGAGTTTTGCA - VPS13C Frame_Shift_Del p.A303Ifs*17 0.34 TCGA-CS-6667-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.26 deleterious(0.02) probably_damaging(0.922) TCGA-CS-6667-01 17 7578550 7578550 G A TP53 Missense_Mutation p.S127F 0.42 deleterious(0) probably_damaging(1) TCGA-CS-6667-01 19 11143993 11143993 C T SMARCA4 Missense_Mutation p.R1192C 0.15 probably_damaging(1) TCGA-CS-6667-01 19 15166067 15166067 G A CASP14 Missense_Mutation p.V168I 0.08 tolerated(0.9) benign(0.07) TCGA-CS-6667-01 19 36572456 36572456 A T WDR62 Missense_Mutation p.K452I 0.17 deleterious(0) benign(0.354) TCGA-CS-6667-01 19 52149575 52149575 C T SIGLEC14 Missense_Mutation p.R119H 0.14 deleterious(0.05) benign(0.401) TCGA-CS-6667-01 1 116311162 116311162 T C CASQ2 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) benign(0.082) TCGA-CS-6667-01 22 50435799 50435799 G A IL17REL Silent p.S308S 0.15 TCGA-CS-6667-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-6667-01 2 215823176 215823176 A G ABCA12 Missense_Mutation p.I1981T 0.51 tolerated(0.06) benign(0.039) TCGA-CS-6667-01 2 219895549 219895549 G A CCDC108 Silent p.C341C 0.22 TCGA-CS-6667-01 2 234652393 234652393 G A UGT1A10 Intron 0.32 TCGA-CS-6667-01 3 56694986 56694986 G A FAM208A Missense_Mutation p.P407L 0.26 deleterious(0) probably_damaging(0.97) TCGA-CS-6667-01 4 113362383 113362383 G C ALPK1 3'UTR 0.38 TCGA-CS-6667-01 4 126239329 126239329 A G FAT4 Missense_Mutation p.Y588C 0.40 probably_damaging(0.967) TCGA-CS-6667-01 4 66201659 66201659 G A EPHA5 Missense_Mutation p.A948V 0.35 tolerated(0.61) benign(0.031) TCGA-CS-6667-01 5 154270897 154270897 T C GEMIN5 Missense_Mutation p.Q1389R 0.40 tolerated(0.29) benign(0.023) TCGA-CS-6667-01 6 33996059 33996059 A C GRM4 Missense_Mutation p.Y843D 0.41 deleterious(0.01) possibly_damaging(0.711) TCGA-CS-6667-01 7 150037192 150037192 A G RARRES2 Silent p.N92N 0.38 TCGA-CS-6667-01 8 36694322 36694322 A G KCNU1 Silent p.P459P 0.29 TCGA-CS-6667-01 X 10106879 10106879 G A WWC3 Missense_Mutation p.R996Q 0.35 tolerated(0.26) probably_damaging(0.971) TCGA-CS-6667-01 X 24753561 24753561 T A POLA1 Missense_Mutation p.F621I 0.33 tolerated(0.05) benign(0.281) TCGA-CS-6667-01 X 27999088 27999088 G A DCAF8L1 Nonsense_Mutation p.R122* 0.33 TCGA-CS-6667-01 X 47272249 47272249 A C ZNF157 Silent p.A259A 0.21 TCGA-CS-6667-01 X 48826090 48826090 C T KCND1 Missense_Mutation p.A197T 0.56 tolerated(0.06) benign(0.312) TCGA-CS-6668-01 10 96084175 96084175 G A PLCE1 Missense_Mutation p.E2191K 0.46 deleterious(0) probably_damaging(1) TCGA-CS-6668-01 11 113102455 113102456 - CCCTCT NCAM1 In_Frame_Ins p.Y442_I443insPL 0.09 TCGA-CS-6668-01 11 65321228 65321228 G A LTBP3 Missense_Mutation p.P270S 0.16 tolerated(0.09) possibly_damaging(0.521) TCGA-CS-6668-01 12 104179169 104179169 A G NT5DC3 Missense_Mutation p.Y425H 0.47 deleterious(0.04) probably_damaging(0.987) TCGA-CS-6668-01 12 106729466 106729466 A C TCP11L2 Missense_Mutation p.E274D 0.46 tolerated(0.59) probably_damaging(0.916) TCGA-CS-6668-01 15 57523456 57523457 - T TCF12 Splice_Site p.X229_splice 0.30 TCGA-CS-6668-01 15 89864982 89864982 G A POLG Silent p.T861T 0.42 TCGA-CS-6668-01 16 71668568 71668568 C T MARVELD3 Intron 0.47 TCGA-CS-6668-01 17 25958281 25958281 G A LGALS9 5'UTR 0.05 TCGA-CS-6668-01 17 39538275 39538275 C T KRT34 Missense_Mutation p.R117H 0.38 deleterious(0.02) benign(0.243) TCGA-CS-6668-01 18 29102122 29102122 C T DSG2 Silent p.I200I 0.28 TCGA-CS-6668-01 18 77624219 77624219 G A KCNG2 Silent p.V184V 0.27 TCGA-CS-6668-01 19 14508025 14508025 C T CD97 Silent p.T205T 0.41 TCGA-CS-6668-01 19 42795074 42795075 - G CIC Frame_Shift_Ins p.S721Lfs*42 0.38 TCGA-CS-6668-01 1 12853498 12853498 T G PRAMEF1 Missense_Mutation p.M41R 0.73 deleterious(0) benign(0.001) TCGA-CS-6668-01 1 201282317 201282317 G A PKP1 Silent p.R110R 0.60 TCGA-CS-6668-01 20 47626800 47626800 T C ARFGEF2 Missense_Mutation p.C1206R 0.22 deleterious(0) probably_damaging(0.999) TCGA-CS-6668-01 2 142567938 142567938 A G LRP1B Missense_Mutation p.C39R 0.56 possibly_damaging(0.712) TCGA-CS-6668-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-6668-01 2 230861511 230861511 A G FBXO36 Missense_Mutation p.I84V 0.42 tolerated(0.42) benign(0.002) TCGA-CS-6668-01 2 86831209 86831209 T C RNF103 Silent p.E605E 0.37 TCGA-CS-6668-01 5 140764645 140764645 G A PCDHGA7 Missense_Mutation p.A727T 0.54 tolerated_low_confidence(0.12) benign(0.019) TCGA-CS-6668-01 6 292482 292482 A G DUSP22 5'UTR 0.25 TCGA-CS-6668-01 6 292483 292483 T C DUSP22 5'UTR 0.25 TCGA-CS-6668-01 7 73731911 73731911 G A CLIP2 Missense_Mutation p.R12H 0.25 deleterious(0) probably_damaging(0.999) TCGA-CS-6668-01 7 75896665 75896665 G A SRRM3 Missense_Mutation p.G307E 0.30 tolerated(0.06) unknown(0) TCGA-CS-6668-01 7 96650149 96650149 C T DLX5 Missense_Mutation p.A257T 0.50 tolerated(0.74) benign(0) TCGA-CS-6668-01 9 114170943 114170943 G A KIAA0368 Nonsense_Mutation p.R1032* 0.69 TCGA-CS-6668-01 9 134360345 134360345 C T PRRC2B Missense_Mutation p.A1859V 0.09 deleterious(0) probably_damaging(0.991) TCGA-CS-6668-01 9 84533205 84533205 G A SPATA31D5P RNA 0.47 TCGA-CS-6668-01 X 106844942 106844942 C G FRMPD3 Missense_Mutation p.P1258A 0.03 deleterious(0) probably_damaging(0.999) TCGA-CS-6668-01 X 65247365 65247365 G A VSIG4 Missense_Mutation p.T254I 0.33 tolerated(0.1) benign(0.025) TCGA-CS-6670-01 10 69366623 69366623 C T CTNNA3 Missense_Mutation p.R95H 0.19 deleterious(0.02) possibly_damaging(0.812) TCGA-CS-6670-01 11 103056994 103056994 T C DYNC2H1 Silent p.S2219S 0.21 TCGA-CS-6670-01 11 118037639 118037639 G A SCN2B Missense_Mutation p.T204M 0.43 tolerated(0.1) benign(0.113) TCGA-CS-6670-01 11 64674138 64674138 T C ATG2A Silent p.R994R 0.10 TCGA-CS-6670-01 12 52913647 52913647 A G KRT5 Missense_Mutation p.V145A 0.17 deleterious(0) possibly_damaging(0.665) TCGA-CS-6670-01 13 21549263 21549263 C T LATS2 Missense_Mutation p.V1005I 0.17 tolerated(0.13) benign(0.096) TCGA-CS-6670-01 15 49148220 49148220 A C SHC4 Missense_Mutation p.M391R 0.12 deleterious(0.02) benign(0.024) TCGA-CS-6670-01 15 70366872 70366872 C T TLE3 Silent p.G124G 0.12 TCGA-CS-6670-01 17 42231994 42231994 G A C17orf53 Missense_Mutation p.S508N 0.11 tolerated(0.05) benign(0.153) TCGA-CS-6670-01 19 3783831 3783831 T C MATK Missense_Mutation p.N189S 0.11 tolerated(0.17) possibly_damaging(0.81) TCGA-CS-6670-01 19 42791394 42791394 T G CIC Splice_Site p.X151_splice 0.16 TCGA-CS-6670-01 19 46526067 46526067 G A PGLYRP1 Silent p.A71A 0.29 TCGA-CS-6670-01 1 100696303 100696303 G A DBT Missense_Mutation p.T140M 0.38 deleterious(0.03) benign(0.216) TCGA-CS-6670-01 1 159900616 159900616 A G IGSF9 Missense_Mutation p.L560S 0.20 deleterious(0.03) benign(0.423) TCGA-CS-6670-01 1 205492349 205492349 C T CDK18 Silent p.P18P 0.39 TCGA-CS-6670-01 1 229773892 229773892 G A URB2 Missense_Mutation p.A1178T 0.23 deleterious(0.04) benign(0.382) TCGA-CS-6670-01 20 31815469 31815469 T C BPIFA3 3'UTR 0.28 TCGA-CS-6670-01 20 50256040 50256040 C T ATP9A Missense_Mutation p.A504T 0.19 deleterious(0) possibly_damaging(0.739) TCGA-CS-6670-01 22 18020229 18020229 C T CECR2 Missense_Mutation p.R521W 0.14 deleterious(0) probably_damaging(1) TCGA-CS-6670-01 22 20100051 20100051 C T TRMT2A 3'UTR 0.32 TCGA-CS-6670-01 22 36894253 36894253 C T FOXRED2 Intron 0.22 TCGA-CS-6670-01 22 50280050 50280050 G A ZBED4 Missense_Mutation p.V914I 0.17 tolerated(1) benign(0.001) TCGA-CS-6670-01 2 120718482 120718482 G A PTPN4 Missense_Mutation p.G745S 0.40 tolerated(0.65) benign(0.01) TCGA-CS-6670-01 2 179589234 179589234 C T TTN Silent p.P6956P 0.30 TCGA-CS-6670-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-CS-6670-01 2 234591431 234591431 T C UGT1A7 Missense_Mutation p.V283A 0.14 deleterious(0) benign(0.142) TCGA-CS-6670-01 3 167246909 167246909 A G WDR49 Silent p.S427S 0.19 TCGA-CS-6670-01 3 184910182 184910182 G A EHHADH Silent p.S668S 0.05 TCGA-CS-6670-01 3 41795900 41795900 A G ULK4 Silent p.Y758Y 0.15 TCGA-CS-6670-01 3 97868884 97868884 A G OR5H14 Missense_Mutation p.I219V 0.41 tolerated(0.2) benign(0.014) TCGA-CS-6670-01 3 98073605 98073605 G A OR5K4 Missense_Mutation p.R303K 0.30 tolerated(1) benign(0) TCGA-CS-6670-01 4 164246627 164246627 T C NPY1R Missense_Mutation p.Q328R 0.20 tolerated(0.12) benign(0.162) TCGA-CS-6670-01 4 166254514 166254514 A G MSMO1 5'UTR 0.38 TCGA-CS-6670-01 4 87643480 87643480 T C PTPN13 Silent p.L501L 0.14 TCGA-CS-6670-01 5 140720793 140720793 C G PCDHGA2 Missense_Mutation p.T752S 0.14 tolerated_low_confidence(0.07) benign(0.323) TCGA-CS-6670-01 5 147803622 147803622 T C FBXO38 Silent p.N560N 0.09 TCGA-CS-6670-01 5 5466481 5466481 C G KIAA0947 Nonsense_Mutation p.S1976* 0.10 TCGA-CS-6670-01 5 94994605 94994605 T C SPATA9 Missense_Mutation p.N163D 0.18 deleterious(0.01) possibly_damaging(0.756) TCGA-CS-6670-01 6 160497010 160497010 T C IGF2R Silent p.C1766C 0.11 TCGA-CS-6670-01 7 112723671 112723671 A G GPR85 Missense_Mutation p.V369A 0.12 deleterious_low_confidence(0.05) possibly_damaging(0.539) TCGA-CS-6670-01 7 121659248 121659249 - A PTPRZ1 Frame_Shift_Ins p.I1639Nfs*42 0.30 TCGA-CS-6670-01 7 150767364 150767364 G T SLC4A2 Missense_Mutation p.E460D 0.10 tolerated(0.44) benign(0.173) TCGA-CS-6670-01 7 51096959 51096959 G A COBL Missense_Mutation p.R612C 0.16 tolerated(0.06) possibly_damaging(0.719) TCGA-CS-6670-01 7 56130820 56130820 T G CCT6A 3'UTR 0.38 TCGA-CS-6670-01 8 1626399 1626399 T A DLGAP2 Missense_Mutation p.S690T 0.13 deleterious(0) probably_damaging(0.999) TCGA-CS-6670-01 9 90501369 90501369 C T SPATA31E1 Missense_Mutation p.P656L 0.13 tolerated(0.67) possibly_damaging(0.828) TCGA-CS-6670-01 X 119691896 119691896 T C CUL4B Splice_Site p.X204_splice 0.43 TCGA-DB-5270-01 10 17632280 17632280 A G PTPLA 3'UTR 0.29 TCGA-DB-5270-01 11 102743820 102743820 C T MMP12 RNA 0.22 TCGA-DB-5270-01 11 55944144 55944144 G C OR5J2 Missense_Mutation p.L17F 0.20 tolerated(0.46) benign(0.138) TCGA-DB-5270-01 12 18573895 18573895 G A PIK3C2G Missense_Mutation p.R738H 0.04 deleterious(0) probably_damaging(1) TCGA-DB-5270-01 12 30863150 30863150 T G CAPRIN2 Missense_Mutation p.N974H 0.24 deleterious(0) probably_damaging(0.995) TCGA-DB-5270-01 12 52370109 52370109 A T ACVR1B Splice_Site p.X111_splice 0.04 TCGA-DB-5270-01 12 72315226 72315226 A T TBC1D15 Nonsense_Mutation p.K616* 0.16 TCGA-DB-5270-01 15 25486890 25486890 G A SNORD115-40 5'Flank 0.22 TCGA-DB-5270-01 15 57524958 57524962 CCACC - TCF12 Frame_Shift_Del p.P292Nfs*44 0.15 TCGA-DB-5270-01 15 73581488 73581488 G A NEO1 Silent p.G1217G 0.25 TCGA-DB-5270-01 16 71098695 71098695 C G HYDIN Silent p.G708G 0.23 TCGA-DB-5270-01 17 41846878 41846878 G C DUSP3 3'UTR 0.15 TCGA-DB-5270-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.17 deleterious(0) probably_damaging(0.992) TCGA-DB-5270-01 17 7578479 7578479 G A TP53 Missense_Mutation p.P151S 0.23 deleterious(0.01) possibly_damaging(0.876) TCGA-DB-5270-01 19 37854228 37854228 A T HKR1 Missense_Mutation p.T511S 0.08 tolerated(0.39) possibly_damaging(0.579) TCGA-DB-5270-01 19 46376150 46376150 C T FOXA3 Missense_Mutation p.A296V 0.15 tolerated(0.08) benign(0) TCGA-DB-5270-01 19 9046721 9046721 C A MUC16 Missense_Mutation p.S11637I 0.28 benign(0.387) TCGA-DB-5270-01 1 21155713 21155713 T C EIF4G3 Missense_Mutation p.I1322V 0.27 tolerated(0.19) possibly_damaging(0.824) TCGA-DB-5270-01 1 24663012 24663012 C A GRHL3 Missense_Mutation p.L103I 0.05 tolerated(0.22) benign(0.08) TCGA-DB-5270-01 20 17462658 17462658 G A PCSK2 Silent p.E620E 0.25 TCGA-DB-5270-01 20 19664885 19664885 C G SLC24A3 Missense_Mutation p.L323V 0.29 deleterious(0.02) possibly_damaging(0.715) TCGA-DB-5270-01 22 20229582 20229582 C T RTN4R Silent p.A358A 0.20 TCGA-DB-5270-01 22 32293560 32293560 C T DEPDC5 Silent p.G1423G 0.22 TCGA-DB-5270-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-5270-01 2 240111738 240111738 G A HDAC4 Missense_Mutation p.P44S 0.14 tolerated(0.22) benign(0.027) TCGA-DB-5270-01 4 109000758 109000758 A G LEF1 Silent p.H245H 0.32 TCGA-DB-5270-01 5 86659176 86659176 C T RASA1 Missense_Mutation p.R489C 0.16 deleterious(0) probably_damaging(0.995) TCGA-DB-5270-01 6 32178697 32178697 G T NOTCH4 Silent p.S899S 0.06 TCGA-DB-5270-01 7 112461796 112461796 A G C7orf60 3'UTR 0.21 TCGA-DB-5270-01 9 77457155 77457155 T C TRPM6 Missense_Mutation p.H86R 0.03 deleterious(0) possibly_damaging(0.883) TCGA-DB-5270-01 X 51238853 51238853 G T NUDT11 Silent p.S148S 0.12 TCGA-DB-5270-01 X 76939371 76939372 - T ATRX Frame_Shift_Ins p.S460Vfs*4 0.26 TCGA-DB-5273-01 11 56258829 56258829 C T OR5M8 Silent p.T6T 0.28 TCGA-DB-5273-01 11 94923103 94923103 G A SESN3 Missense_Mutation p.S122F 0.23 deleterious(0.01) possibly_damaging(0.776) TCGA-DB-5273-01 12 130185090 130185090 C T TMEM132D Missense_Mutation p.R78Q 0.26 deleterious(0) probably_damaging(0.989) TCGA-DB-5273-01 12 50586281 50586281 G A LIMA1 Missense_Mutation p.S366F 0.07 deleterious(0) benign(0.418) TCGA-DB-5273-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.75 tolerated(0.13) possibly_damaging(0.631) TCGA-DB-5273-01 18 44561501 44561501 C T TCEB3B Silent p.A45A 0.20 TCGA-DB-5273-01 19 55607493 55607493 G C PPP1R12C Missense_Mutation p.S360C 0.13 deleterious(0) probably_damaging(0.991) TCGA-DB-5273-01 1 153313006 153313006 G C PGLYRP4 Missense_Mutation p.H225Q 0.08 tolerated(0.09) possibly_damaging(0.612) TCGA-DB-5273-01 1 26371659 26371659 G C SLC30A2 Missense_Mutation p.P34A 0.32 tolerated(0.27) benign(0.045) TCGA-DB-5273-01 1 64515592 64515592 C T ROR1 Silent p.C131C 0.36 TCGA-DB-5273-01 1 91818120 91818120 A G HFM1 Silent p.F640F 0.15 TCGA-DB-5273-01 2 105858978 105858978 G A GPR45 Silent p.T221T 0.28 TCGA-DB-5273-01 2 152406213 152406213 A G NEB Silent p.Y6662Y 0.14 TCGA-DB-5273-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-5273-01 2 241969887 241969887 G A SNED1 Missense_Mutation p.V134I 0.19 tolerated(0.99) benign(0.01) TCGA-DB-5273-01 5 179016595 179016595 C T RUFY1 Nonsense_Mutation p.Q359* 0.33 TCGA-DB-5273-01 6 109294621 109294621 T C ARMC2 Silent p.H836H 0.39 TCGA-DB-5273-01 8 39091490 39091490 G C ADAM32 Silent p.V569V 0.33 TCGA-DB-5273-01 X 76939964 76939964 G A ATRX Nonsense_Mutation p.Q262* 0.71 TCGA-DB-5274-01 10 33134208 33134208 A G C10ORF68 Intron 0.07 TCGA-DB-5274-01 11 117869741 117869741 G T IL10RA Silent p.L374L 0.09 TCGA-DB-5274-01 11 122805551 122805554 AAAG - C11orf63 Frame_Shift_Del p.R470Dfs*23 0.12 TCGA-DB-5274-01 11 126278326 126278326 G A ST3GAL4 Missense_Mutation p.V188I 0.29 tolerated(0.14) probably_damaging(0.993) TCGA-DB-5274-01 11 18158870 18158870 G A MRGPRX3 Missense_Mutation p.A41T 0.28 deleterious(0) benign(0.001) TCGA-DB-5274-01 11 44621761 44621761 C T CD82 Silent p.S39S 0.26 TCGA-DB-5274-01 11 55594988 55594988 G A OR5L2 Missense_Mutation p.M98I 0.11 tolerated(0.6) benign(0.049) TCGA-DB-5274-01 11 59132343 59132343 T C OR5AN1 Missense_Mutation p.S138P 0.04 deleterious(0.03) probably_damaging(0.986) TCGA-DB-5274-01 12 106850924 106850924 C T POLR3B Missense_Mutation p.R768C 0.29 deleterious(0) probably_damaging(0.999) TCGA-DB-5274-01 12 125834834 125834834 G A TMEM132B Missense_Mutation p.A297T 0.04 deleterious(0.01) possibly_damaging(0.447) TCGA-DB-5274-01 12 13529264 13529264 G A C12orf36 Missense_Mutation p.P26S 0.08 possibly_damaging(0.803) TCGA-DB-5274-01 13 113699625 113699625 C T MCF2L Missense_Mutation p.R107W 0.05 deleterious(0) probably_damaging(1) TCGA-DB-5274-01 14 36987093 36987093 G T NKX2-1 Nonsense_Mutation p.S199* 0.12 TCGA-DB-5274-01 14 61451520 61451520 A G SLC38A6 Silent p.T103T 0.07 TCGA-DB-5274-01 14 64699865 64699866 TG - ESR2 Frame_Shift_Del p.Q528Vfs*18 0.19 TCGA-DB-5274-01 14 81744248 81744248 T G STON2 Missense_Mutation p.K469N 0.04 deleterious(0.01) possibly_damaging(0.839) TCGA-DB-5274-01 14 96757939 96757939 A G ATG2B Silent p.H1859H 0.10 TCGA-DB-5274-01 15 84286924 84286924 A G SH3GL3 Missense_Mutation p.D310G 0.13 deleterious(0) probably_damaging(1) TCGA-DB-5274-01 16 5061202 5061202 C T SEC14L5 Missense_Mutation p.T636M 0.36 tolerated(0.18) benign(0.052) TCGA-DB-5274-01 17 34235499 34235499 G A AC015849.16 RNA 0.05 TCGA-DB-5274-01 17 66887644 66887645 - G ABCA8 Frame_Shift_Ins p.I1004Hfs*3 0.24 TCGA-DB-5274-01 19 42795593 42795594 TG - CIC Frame_Shift_Del p.V892Tfs*38 0.09 TCGA-DB-5274-01 19 56422063 56422063 G C NLRP13 Missense_Mutation p.N716K 0.48 tolerated(0.16) benign(0.005) TCGA-DB-5274-01 1 109103056 109103058 GAA - FAM102B In_Frame_Del p.K6del 0.59 TCGA-DB-5274-01 1 151021328 151021331 AGTA - C1orf56 Splice_Site p.X335_splice 0.34 TCGA-DB-5274-01 1 186315342 186315342 C G TPR Missense_Mutation p.K1007N 0.06 benign(0.403) TCGA-DB-5274-01 1 210761338 210761338 C T HHAT Silent p.G381G 0.08 TCGA-DB-5274-01 1 22211318 22211318 G A HSPG2 Silent p.N483N 0.37 TCGA-DB-5274-01 1 78432402 78432405 AACA - FUBP1 Frame_Shift_Del p.M149Kfs*42 0.44 TCGA-DB-5274-01 1 78433848 78433851 CAGT - FUBP1 Splice_Site p.X83_splice 0.13 TCGA-DB-5274-01 1 92546168 92546168 C T BTBD8 Missense_Mutation p.L14F 0.16 tolerated_low_confidence(0.66) benign(0.007) TCGA-DB-5274-01 20 45130734 45130736 AAG - ZNF334 In_Frame_Del p.F415del 0.27 TCGA-DB-5274-01 20 47305216 47305216 A G PREX1 Missense_Mutation p.V438A 0.08 tolerated(0.08) benign(0.231) TCGA-DB-5274-01 21 30358538 30358538 G - LTN1 Frame_Shift_Del p.M136Cfs*10 0.29 TCGA-DB-5274-01 2 149511681 149511682 AG - EPC2 Frame_Shift_Del p.K217Nfs*8 0.37 TCGA-DB-5274-01 2 179645981 179645981 C T TTN Silent p.V1130V 0.26 TCGA-DB-5274-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-5274-01 3 108103610 108103612 TTC - MYH15 In_Frame_Del p.K1871del 0.40 TCGA-DB-5274-01 3 122419983 122419983 C A PARP14 Missense_Mutation p.P861Q 0.11 deleterious(0) probably_damaging(0.974) TCGA-DB-5274-01 3 136117601 136117601 G C STAG1 Missense_Mutation p.S756C 0.25 deleterious(0.05) benign(0.002) TCGA-DB-5274-01 3 139237308 139237308 C T RBP1 Silent p.E165E 0.07 TCGA-DB-5274-01 3 178968983 178968983 G A KCNMB3 5'UTR 0.32 TCGA-DB-5274-01 3 4810358 4810358 C T ITPR1 Silent p.D1948D 0.26 TCGA-DB-5274-01 4 138442647 138442649 TCT - PCDH18 In_Frame_Del p.K981del 0.15 TCGA-DB-5274-01 4 3042359 3042359 C T GRK4 3'UTR 0.17 TCGA-DB-5274-01 5 114860125 114860125 G C FEM1C Missense_Mutation p.I578M 0.38 tolerated(0.49) benign(0.024) TCGA-DB-5274-01 5 160067534 160067534 G A ATP10B Missense_Mutation p.R312C 0.04 deleterious(0) benign(0.159) TCGA-DB-5274-01 5 41149347 41149347 A G C6 Silent p.C873C 0.43 TCGA-DB-5274-01 5 66441064 66441064 A C MAST4 Missense_Mutation p.E984A 0.38 possibly_damaging(0.564) TCGA-DB-5274-01 6 117198501 117198501 C T RFX6 Silent p.S21S 0.17 TCGA-DB-5274-01 6 32151248 32151249 AG - RNF5 3'Flank 0.28 TCGA-DB-5274-01 6 32713716 32713716 G C HLA-DQA2 Missense_Mutation p.E160D 0.44 deleterious(0.02) probably_damaging(0.938) TCGA-DB-5274-01 7 100855141 100855141 G T PLOD3 Silent p.L406L 0.13 TCGA-DB-5274-01 7 27169089 27169089 G A HOXA4 Silent p.L240L 0.34 TCGA-DB-5274-01 8 101733783 101733784 - T PABPC1 Frame_Shift_Ins p.M10Nfs*66 0.21 TCGA-DB-5274-01 9 111617665 111617665 C T ACTL7B Silent p.S182S 0.08 TCGA-DB-5274-01 9 111853321 111853321 G C TMEM245 Missense_Mutation p.T344R 0.10 tolerated(0.42) benign(0.017) TCGA-DB-5274-01 X 117079600 117079600 T C KLHL13 Intron 0.33 TCGA-DB-5274-01 X 120181766 120181766 C T GLUD2 Silent p.R76R 0.09 TCGA-DB-5274-01 X 122561827 122561827 G A GRIA3 Nonsense_Mutation p.W638* 0.05 TCGA-DB-5274-01 X 12906720 12906720 C T TLR7 Silent p.N1031N 0.31 TCGA-DB-5274-01 X 142717275 142717275 G A SLITRK4 Silent p.S550S 0.35 TCGA-DB-5274-01 X 152770259 152770259 C T BGN Missense_Mutation p.P57L 0.44 deleterious(0) benign(0.001) TCGA-DB-5274-01 X 23353202 23353202 T G PTCHD1 Silent p.V70V 0.06 TCGA-DB-5274-01 X 47307606 47307606 T G ZNF41 Missense_Mutation p.K521N 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-DB-5274-01 X 70756047 70756050 TTCC - OGT Frame_Shift_Del p.F21Kfs*3 0.41 TCGA-DB-5275-01 11 123476150 123476153 ACTA - GRAMD1B Frame_Shift_Del p.L287Hfs*44 0.43 TCGA-DB-5275-01 11 43348086 43348087 AT - API5 Frame_Shift_Del p.Y261Ffs*3 0.25 TCGA-DB-5275-01 11 67815190 67815192 ACA - TCIRG1 In_Frame_Del p.N462del 0.16 TCGA-DB-5275-01 12 102471196 102471196 A C NUP37 Missense_Mutation p.V209G 0.03 tolerated(0.32) benign(0.017) TCGA-DB-5275-01 12 117768410 117768410 G A NOS1 Silent p.P155P 0.40 TCGA-DB-5275-01 12 122958070 122958070 G C ZCCHC8 Missense_Mutation p.Q700E 0.37 deleterious(0.02) possibly_damaging(0.714) TCGA-DB-5275-01 12 124401043 124401043 G A DNAH10 Missense_Mutation p.E3470K 0.07 probably_damaging(0.999) TCGA-DB-5275-01 12 64891776 64891776 G A TBK1 Missense_Mutation p.G699R 0.52 tolerated(0.55) probably_damaging(0.911) TCGA-DB-5275-01 12 97137849 97137849 G A C12orf55 Missense_Mutation p.A2537T 0.10 tolerated(1) benign(0.006) TCGA-DB-5275-01 15 23890478 23890478 A G MAGEL2 Silent p.F201F 0.05 TCGA-DB-5275-01 15 29390775 29390775 C T APBA2 Missense_Mutation p.T445M 0.40 deleterious(0.02) possibly_damaging(0.531) TCGA-DB-5275-01 15 45777517 45777517 T A SLC30A4 Splice_Site p.X379_splice 0.09 TCGA-DB-5275-01 15 48795985 48795985 T C FBN1 Silent p.S704S 0.35 TCGA-DB-5275-01 15 62302717 62302717 C A VPS13C Missense_Mutation p.C322F 0.30 deleterious(0.02) benign(0.028) TCGA-DB-5275-01 15 75931952 75931952 C G IMP3 3'UTR 0.04 TCGA-DB-5275-01 17 10614361 10614361 G C ADPRM Missense_Mutation p.G310A 0.37 tolerated(0.27) benign(0.007) TCGA-DB-5275-01 17 7577532 7577532 G A TP53 Missense_Mutation p.P250L 0.82 deleterious(0) probably_damaging(1) TCGA-DB-5275-01 18 24440814 24440814 G A AQP4 Silent p.I205I 0.12 TCGA-DB-5275-01 18 33706819 33706819 G C SLC39A6 Missense_Mutation p.S51C 0.03 tolerated(0.18) benign(0.155) TCGA-DB-5275-01 19 10127828 10127828 G A RDH8 Missense_Mutation p.V87M 0.50 deleterious(0) probably_damaging(0.994) TCGA-DB-5275-01 19 15228815 15228815 C G ILVBL Missense_Mutation p.D355H 0.05 deleterious(0) probably_damaging(1) TCGA-DB-5275-01 19 9069716 9069716 A C MUC16 Silent p.T5910T 0.36 TCGA-DB-5275-01 1 11854817 11854817 G T MTHFR Missense_Mutation p.Q379K 0.06 tolerated(0.62) benign(0.41) TCGA-DB-5275-01 1 142803528 142803528 A C RP11-423O2.5 RNA 0.09 TCGA-DB-5275-01 1 160832522 160832522 G A CD244 5'UTR 0.16 TCGA-DB-5275-01 1 161132502 161132504 CTT - USP21 In_Frame_Del p.F294del 0.12 TCGA-DB-5275-01 1 167097454 167097454 C A DUSP27 Missense_Mutation p.T1029N 0.32 deleterious(0.04) probably_damaging(0.921) TCGA-DB-5275-01 1 170003639 170003639 T A KIFAP3 Splice_Site p.X206_splice 0.43 TCGA-DB-5275-01 1 192627429 192627429 C T RGS13 Missense_Mutation p.R76W 0.10 deleterious(0.01) probably_damaging(0.915) TCGA-DB-5275-01 1 198677313 198677313 C T PTPRC Missense_Mutation p.T319I 0.42 tolerated(0.05) benign(0.103) TCGA-DB-5275-01 1 27100207 27100207 C T ARID1A Nonsense_Mutation p.R1335* 0.13 TCGA-DB-5275-01 1 33797964 33797966 CTT - PHC2 In_Frame_Del p.K600del 0.47 TCGA-DB-5275-01 2 108881449 108881449 T C SULT1C3 Missense_Mutation p.F264L 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-DB-5275-01 2 179422826 179422826 A G TTN Silent p.L29085L 0.04 TCGA-DB-5275-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-5275-01 3 9476091 9476091 C A SETD5 Missense_Mutation p.S84Y 0.32 deleterious(0) possibly_damaging(0.851) TCGA-DB-5275-01 4 123664857 123664857 T C BBS12 Missense_Mutation p.Y604H 0.06 tolerated(0.22) possibly_damaging(0.772) TCGA-DB-5275-01 4 57340227 57340227 G A SRP72 Missense_Mutation p.R121H 0.48 deleterious(0) probably_damaging(0.953) TCGA-DB-5275-01 5 131940537 131940537 A G RAD50 Missense_Mutation p.D855G 0.29 tolerated(0.1) benign(0.037) TCGA-DB-5275-01 6 100382335 100382335 A G MCHR2 Missense_Mutation p.C216R 0.39 tolerated(0.12) possibly_damaging(0.813) TCGA-DB-5275-01 6 83075717 83075717 A G TPBG Missense_Mutation p.I347V 0.04 tolerated(0.59) benign(0.001) TCGA-DB-5275-01 7 120629721 120629721 C T CPED1 Nonsense_Mutation p.R16* 0.43 TCGA-DB-5275-01 7 138982568 138982568 C T UBN2 Missense_Mutation p.R1344W 0.35 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DB-5275-01 7 23768774 23768792 TTCCTTTGGAGCTGCAGTT - STK31 Frame_Shift_Del p.P131Lfs*33 0.31 TCGA-DB-5275-01 9 6644691 6644691 C T GLDC Missense_Mutation p.S86N 0.39 tolerated(0.11) benign(0.345) TCGA-DB-5275-01 9 99795313 99795313 C A CTSV Missense_Mutation p.G308V 0.38 deleterious(0) probably_damaging(1) TCGA-DB-5275-01 X 142967177 142967177 A T UBE2NL 5'UTR 0.89 TCGA-DB-5275-01 X 76814305 76814305 A - ATRX Frame_Shift_Del p.F2113Lfs*10 0.50 TCGA-DB-5276-01 10 48390167 48390167 G A RBP3 Silent p.G237G 0.26 TCGA-DB-5276-01 11 45245878 45245878 C T PRDM11 Missense_Mutation p.R285C 0.06 deleterious(0) probably_damaging(0.944) TCGA-DB-5276-01 11 5221701 5221701 A G OR51V1 Missense_Mutation p.L77P 0.09 deleterious(0.03) possibly_damaging(0.866) TCGA-DB-5276-01 12 40114882 40114885 ACAA - C12orf40 Frame_Shift_Del p.T598Rfs*5 0.20 TCGA-DB-5276-01 14 73989793 73989793 G A HEATR4 Nonsense_Mutation p.R22* 0.15 TCGA-DB-5276-01 17 73016725 73016727 AAG - ICT1 In_Frame_Del p.E171del 0.26 TCGA-DB-5276-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.42 deleterious(0) probably_damaging(1) TCGA-DB-5276-01 19 40095291 40095291 T A LGALS13 Missense_Mutation p.I22N 0.04 deleterious(0) probably_damaging(0.998) TCGA-DB-5276-01 19 54327539 54327539 C T NLRP12 5'UTR 0.43 TCGA-DB-5276-01 19 57744018 57744018 C T AURKC Silent p.S135S 0.08 TCGA-DB-5276-01 1 118483783 118483783 C T WDR3 Missense_Mutation p.R276W 0.16 deleterious(0) probably_damaging(1) TCGA-DB-5276-01 20 2843377 2843377 C T VPS16 Intron 0.14 TCGA-DB-5276-01 20 3208372 3208372 C T SLC4A11 3'UTR 0.15 TCGA-DB-5276-01 2 168110545 168110545 C G XIRP2 Missense_Mutation p.A3520G 0.14 benign(0.049) TCGA-DB-5276-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-DB-5276-01 2 73800143 73800143 G C ALMS1 Missense_Mutation p.Q3712H 0.17 benign(0.275) TCGA-DB-5276-01 5 173316976 173316977 AA - CPEB4 Frame_Shift_Del p.Q83Afs*26 0.21 TCGA-DB-5276-01 8 24151603 24151603 G C ADAM28 5'UTR 0.26 TCGA-DB-5276-01 X 39922031 39922032 CT - BCOR Frame_Shift_Del p.E1382Ifs*26 0.26 TCGA-DB-5276-01 X 76939181 76939184 AGGA - ATRX Frame_Shift_Del p.S522Qfs*39 0.35 TCGA-DB-5276-01 X 79279563 79279563 C T TBX22 Missense_Mutation p.R120W 0.45 deleterious(0) probably_damaging(1) TCGA-DB-5277-01 10 31138346 31138346 G A ZNF438 Missense_Mutation p.P330S 0.09 tolerated(0.82) benign(0.001) TCGA-DB-5277-01 11 114167250 114167250 G C NNMT 5'UTR 0.43 TCGA-DB-5277-01 11 4626616 4626616 A G TRIM68 Missense_Mutation p.L40P 0.63 deleterious(0) probably_damaging(0.953) TCGA-DB-5277-01 11 55659044 55659044 A T TRIM51 Missense_Mutation p.Y432F 0.04 tolerated(0.09) possibly_damaging(0.718) TCGA-DB-5277-01 11 60150653 60150653 C T MS4A7 Silent p.S13S 0.06 TCGA-DB-5277-01 11 71720101 71720101 T C NUMA1 Missense_Mutation p.H1657R 0.37 benign(0.001) TCGA-DB-5277-01 12 2017054 2017054 G A CACNA2D4 Silent p.N212N 0.09 TCGA-DB-5277-01 12 48096531 48096531 C T RPAP3 Nonsense_Mutation p.W31* 0.15 TCGA-DB-5277-01 12 57919602 57919602 C T MBD6 Missense_Mutation p.P284L 0.21 deleterious_low_confidence(0) unknown(0) TCGA-DB-5277-01 12 64437269 64437269 G A SRGAP1 Missense_Mutation p.A239T 0.82 deleterious(0) probably_damaging(0.96) TCGA-DB-5277-01 12 76453623 76453623 C T NAP1L1 Silent p.T128T 0.69 TCGA-DB-5277-01 14 76241856 76241856 A G TTLL5 Silent p.A722A 0.42 TCGA-DB-5277-01 15 44068328 44068328 C T ELL3 Missense_Mutation p.G64S 0.40 tolerated(0.09) probably_damaging(0.938) TCGA-DB-5277-01 15 48729544 48729544 G T FBN1 Silent p.I2118I 0.78 TCGA-DB-5277-01 17 10213033 10213033 T C MYH13 Missense_Mutation p.K1591E 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-DB-5277-01 17 15974805 15974805 T C NCOR1 Missense_Mutation p.Q1357R 0.83 probably_damaging(0.978) TCGA-DB-5277-01 17 40030158 40030158 G A ACLY Nonsense_Mutation p.Q850* 0.20 TCGA-DB-5277-01 17 4578457 4578457 C G PELP1 Silent p.L397L 0.29 TCGA-DB-5277-01 17 56344812 56344812 G A LPO Missense_Mutation p.G599D 0.50 tolerated(1) benign(0.004) TCGA-DB-5277-01 17 56355208 56355208 C T MPO Missense_Mutation p.R395H 0.05 tolerated(0.08) benign(0.416) TCGA-DB-5277-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.91 deleterious(0) probably_damaging(0.996) TCGA-DB-5277-01 17 80789719 80789719 G C ZNF750 Silent p.G204G 0.10 TCGA-DB-5277-01 19 16280488 16280488 C T CIB3 Missense_Mutation p.D51N 0.05 tolerated(0.91) benign(0.001) TCGA-DB-5277-01 19 36015811 36015811 C T SBSN Missense_Mutation p.G552R 0.25 tolerated(0.11) probably_damaging(0.998) TCGA-DB-5277-01 19 3784173 3784173 G A MATK Missense_Mutation p.A105V 0.45 tolerated(0.44) benign(0.04) TCGA-DB-5277-01 1 22166420 22166420 C T HSPG2 Missense_Mutation p.V3202M 0.38 probably_damaging(1) TCGA-DB-5277-01 1 247582222 247582222 G A NLRP3 Silent p.P42P 0.39 TCGA-DB-5277-01 1 45115731 45115731 G A RNF220 Intron 0.12 TCGA-DB-5277-01 1 6202211 6202212 - A CHD5 Frame_Shift_Ins p.G805Wfs*23 0.30 TCGA-DB-5277-01 20 16712312 16712312 G C SNRPB2 Splice_Site 0.16 TCGA-DB-5277-01 20 2464637 2464637 G C ZNF343 Missense_Mutation p.P324A 0.23 deleterious(0.02) possibly_damaging(0.459) TCGA-DB-5277-01 21 15561431 15561431 G C LIPI Missense_Mutation p.T140S 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-DB-5277-01 21 32492682 32492682 G A TIAM1 3'UTR 0.46 TCGA-DB-5277-01 21 47978201 47978201 T C DIP2A Silent p.I1288I 0.20 TCGA-DB-5277-01 2 15555741 15555741 C G NBAS Missense_Mutation p.E956Q 0.43 tolerated(0.15) probably_damaging(0.98) TCGA-DB-5277-01 2 197705876 197705876 T C PGAP1 3'UTR 0.51 TCGA-DB-5277-01 2 207310230 207310230 C G ADAM23 Missense_Mutation p.H138Q 0.30 tolerated(0.56) possibly_damaging(0.483) TCGA-DB-5277-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-5277-01 2 231314895 231314895 G A SP100 Missense_Mutation p.E249K 0.55 deleterious(0.02) possibly_damaging(0.502) TCGA-DB-5277-01 2 37035632 37035632 C T VIT Silent p.N469N 0.33 TCGA-DB-5277-01 2 61315601 61315601 A C KIAA1841 Silent p.I362I 0.55 TCGA-DB-5277-01 3 154145322 154145322 G A GPR149 Missense_Mutation p.A386V 0.86 deleterious(0.01) benign(0.241) TCGA-DB-5277-01 4 54326990 54326990 A G LNX1 3'UTR 0.18 TCGA-DB-5277-01 5 139917069 139917069 C T ANKHD1 Nonsense_Mutation p.R2375* 0.87 TCGA-DB-5277-01 5 35709170 35709170 A G SPEF2 Missense_Mutation p.H929R 0.12 tolerated(0.53) benign(0.039) TCGA-DB-5277-01 5 41045922 41045922 C T MROH2B Missense_Mutation p.V588M 0.12 tolerated(0.12) benign(0.023) TCGA-DB-5277-01 6 44143869 44143869 C G CAPN11 Missense_Mutation p.S299C 0.39 deleterious(0) probably_damaging(0.991) TCGA-DB-5277-01 6 78172156 78172156 G T HTR1B Missense_Mutation p.A322D 0.46 deleterious(0) possibly_damaging(0.903) TCGA-DB-5277-01 6 83075656 83075656 G A TPBG Silent p.P326P 0.29 TCGA-DB-5277-01 7 142626123 142626123 A G TRPV5 Missense_Mutation p.S194P 0.15 deleterious(0.01) possibly_damaging(0.838) TCGA-DB-5277-01 8 125498877 125498880 TTTA - RNF139 Frame_Shift_Del p.L330Ffs*10 0.11 TCGA-DB-5277-01 8 95142932 95142932 G A CDH17 Missense_Mutation p.R774W 0.19 tolerated(0.06) possibly_damaging(0.696) TCGA-DB-5277-01 X 73047524 73047524 A T XIST RNA 0.62 TCGA-DB-5278-01 10 29770516 29770516 G T SVIL Missense_Mutation p.H1699Q 0.34 tolerated(1) benign(0) TCGA-DB-5278-01 17 79172021 79172021 C A AZI1 Missense_Mutation p.G455V 0.17 tolerated(0.75) benign(0.004) TCGA-DB-5278-01 19 33355655 33355655 T G SLC7A9 Missense_Mutation p.I39L 0.56 deleterious(0) probably_damaging(0.934) TCGA-DB-5278-01 19 42791743 42791743 T G CIC Missense_Mutation p.F210C 0.52 probably_damaging(1) TCGA-DB-5278-01 19 42799060 42799060 G A CIC Missense_Mutation p.R1515H 0.08 probably_damaging(0.964) TCGA-DB-5278-01 1 220387224 220387224 C T RAB3GAP2 Missense_Mutation p.R93Q 0.28 tolerated(0.2) benign(0.11) TCGA-DB-5278-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-5279-01 10 112745430 112745430 C A SHOC2 Missense_Mutation p.L250I 0.09 tolerated(0.28) probably_damaging(0.996) TCGA-DB-5279-01 11 10615122 10615122 C T MRVI1 Missense_Mutation p.V698I 0.46 tolerated(0.24) probably_damaging(0.998) TCGA-DB-5279-01 11 113852031 113852031 A T HTR3A Missense_Mutation p.E130V 0.42 deleterious(0) probably_damaging(0.982) TCGA-DB-5279-01 11 65733982 65733982 A G SART1 Silent p.T381T 0.24 TCGA-DB-5279-01 11 68355456 68355456 A G PPP6R3 Missense_Mutation p.N565S 0.04 tolerated(0.06) possibly_damaging(0.602) TCGA-DB-5279-01 11 84996386 84996386 T G DLG2 Missense_Mutation p.T22P 0.04 deleterious_low_confidence(0) benign(0.03) TCGA-DB-5279-01 13 24411745 24411745 T C MIPEP Missense_Mutation p.M497V 0.22 deleterious(0) possibly_damaging(0.876) TCGA-DB-5279-01 13 32811758 32811758 C G FRY Missense_Mutation p.T2018S 0.31 tolerated(1) benign(0.015) TCGA-DB-5279-01 13 35923243 35923243 A G NBEA Splice_Site p.X1968_splice 0.28 TCGA-DB-5279-01 13 38320234 38320234 C T TRPC4 Missense_Mutation p.R246Q 0.06 tolerated(1) benign(0.004) TCGA-DB-5279-01 13 46537892 46537892 C T ZC3H13 3'UTR 0.43 TCGA-DB-5279-01 14 60097308 60097308 G A RTN1 Intron 0.65 TCGA-DB-5279-01 15 25444675 25444675 C A SNORD115-16 RNA 0.25 TCGA-DB-5279-01 15 30024898 30024898 C T TJP1 Missense_Mutation p.D620N 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-DB-5279-01 15 85326612 85326612 C T ZNF592 Nonsense_Mutation p.R236* 0.21 TCGA-DB-5279-01 16 10997737 10997737 C T CIITA Nonsense_Mutation p.R308* 0.22 TCGA-DB-5279-01 16 30530025 30530025 C T ITGAL Silent p.N1071N 0.20 TCGA-DB-5279-01 16 848693 848693 G A GNG13 3'UTR 0.35 TCGA-DB-5279-01 17 27893210 27893210 C T ABHD15 Missense_Mutation p.A259T 0.60 deleterious(0) probably_damaging(0.998) TCGA-DB-5279-01 17 3458040 3458040 G A TRPV3 Silent p.T35T 0.50 TCGA-DB-5279-01 17 48741328 48741328 C G ABCC3 Missense_Mutation p.N398K 0.07 deleterious(0) possibly_damaging(0.794) TCGA-DB-5279-01 19 1785266 1785266 G A ATP8B3 Silent p.L1142L 0.16 TCGA-DB-5279-01 19 35802842 35802842 C T MAG Silent p.P546P 0.88 TCGA-DB-5279-01 19 40520711 40520711 C G ZNF546 Missense_Mutation p.L512V 0.72 deleterious(0.05) possibly_damaging(0.626) TCGA-DB-5279-01 19 49933845 49933845 C T SLC17A7 Silent p.P538P 0.50 TCGA-DB-5279-01 19 5587939 5587939 G A SAFB2 Missense_Mutation p.R860C 0.20 deleterious(0) possibly_damaging(0.876) TCGA-DB-5279-01 1 150599964 150599964 G A ENSA Silent p.L54L 0.52 TCGA-DB-5279-01 1 154061934 154061934 G A NUP210L Missense_Mutation p.A775V 0.33 tolerated(0.23) benign(0.005) TCGA-DB-5279-01 1 156770345 156770345 G A PRCC 3'UTR 0.61 TCGA-DB-5279-01 1 157491079 157491079 G A FCRL5 Missense_Mutation p.P748L 0.17 deleterious(0.05) benign(0.341) TCGA-DB-5279-01 1 183543623 183543623 C T NCF2 Nonsense_Mutation p.W167* 0.47 TCGA-DB-5279-01 1 216824353 216824353 C T ESRRG Missense_Mutation p.R189H 0.15 deleterious(0) probably_damaging(0.933) TCGA-DB-5279-01 1 70504174 70504174 G A LRRC7 Silent p.P851P 0.86 TCGA-DB-5279-01 1 72748110 72748110 C T NEGR1 Missense_Mutation p.S23N 0.23 tolerated(0.06) benign(0.24) TCGA-DB-5279-01 20 52779339 52779339 A T CYP24A1 Missense_Mutation p.C303S 0.49 tolerated(0.2) benign(0.262) TCGA-DB-5279-01 20 62272736 62272736 G A STMN3 Silent p.A166A 0.62 TCGA-DB-5279-01 22 26937282 26937282 G A TPST2 Silent p.R105R 0.21 TCGA-DB-5279-01 22 38323452 38323452 G A MICALL1 Silent p.P500P 0.39 TCGA-DB-5279-01 2 139308482 139308482 G A SPOPL Silent p.R70R 0.18 TCGA-DB-5279-01 2 166627256 166627256 C T GALNT3 5'UTR 0.08 TCGA-DB-5279-01 2 173366600 173366600 A T ITGA6 Intron 0.17 TCGA-DB-5279-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-5279-01 2 79253917 79253917 A G REG3G Missense_Mutation p.Y52C 0.34 deleterious(0.01) probably_damaging(0.969) TCGA-DB-5279-01 3 182759530 182759530 T C MCCC1 Silent p.A364A 0.42 TCGA-DB-5279-01 3 197559180 197559180 A G LRCH3 Missense_Mutation p.N365S 0.20 tolerated(0.12) probably_damaging(0.986) TCGA-DB-5279-01 3 4491010 4491010 G A SUMF1 Silent p.G153G 0.41 TCGA-DB-5279-01 3 50099412 50099412 C T RBM6 Silent p.P819P 0.30 TCGA-DB-5279-01 4 123192264 123192264 G A KIAA1109 Missense_Mutation p.V2529M 0.26 benign(0.001) TCGA-DB-5279-01 5 111066549 111066549 T A NREP 3'UTR 0.22 TCGA-DB-5279-01 5 140481839 140481839 C T PCDHB3 Missense_Mutation p.R536C 0.24 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-DB-5279-01 5 140711827 140711827 C T PCDHGA1 Missense_Mutation p.R526W 0.21 deleterious_low_confidence(0.02) benign(0.117) TCGA-DB-5279-01 5 148727842 148727842 C T GRPEL2 Missense_Mutation p.P29S 0.21 tolerated(0.56) benign(0.002) TCGA-DB-5279-01 5 67589138 67589138 G A PIK3R1 Missense_Mutation p.G376R 0.37 deleterious(0) probably_damaging(1) TCGA-DB-5279-01 5 80607067 80607070 AAAG - ZCCHC9 Frame_Shift_Del p.K224Ifs*21 0.51 TCGA-DB-5279-01 6 100841631 100841631 G A SIM1 Silent p.C434C 0.22 TCGA-DB-5279-01 6 11190997 11190997 A G NEDD9 Missense_Mutation p.S369P 0.50 deleterious(0.02) probably_damaging(0.994) TCGA-DB-5279-01 6 28472105 28472105 G A GPX6 Silent p.D210D 0.45 TCGA-DB-5279-01 6 43400462 43400462 C T ABCC10 Silent p.C248C 0.06 TCGA-DB-5279-01 6 52268301 52268301 C T PAQR8 Missense_Mutation p.A97V 0.19 tolerated(0.41) benign(0.022) TCGA-DB-5279-01 8 134050855 134050855 G A SLA Nonsense_Mutation p.R289* 0.24 TCGA-DB-5279-01 9 136217156 136217156 C T RPL7A Silent p.H159H 0.19 TCGA-DB-5279-01 9 22008680 22008680 C T CDKN2B Intron 0.78 TCGA-DB-5279-01 9 5090496 5090496 C T JAK2 Nonsense_Mutation p.R938* 0.83 TCGA-DB-5279-01 9 91926227 91926227 A G CKS2 Missense_Mutation p.Y7C 0.44 tolerated(0.06) probably_damaging(0.947) TCGA-DB-5279-01 X 140995929 140995929 C T MAGEC1 Silent p.D913D 0.06 TCGA-DB-5280-01 11 104915359 104915359 G A CARD16 Silent p.L12L 0.06 TCGA-DB-5280-01 12 24736169 24736169 T C LINC00477 RNA 0.55 TCGA-DB-5280-01 13 44455647 44455647 G - LACC1 Frame_Shift_Del p.G176Efs*3 0.27 TCGA-DB-5280-01 14 103599762 103599762 C T TNFAIP2 Missense_Mutation p.R537C 0.43 deleterious(0.02) probably_damaging(0.932) TCGA-DB-5280-01 14 97321577 97321577 A G VRK1 Missense_Mutation p.Y198C 0.42 deleterious(0) probably_damaging(1) TCGA-DB-5280-01 15 64506110 64506110 T C CSNK1G1 Missense_Mutation p.I220V 0.03 deleterious(0.05) probably_damaging(0.986) TCGA-DB-5280-01 16 71602180 71602180 T C TAT Missense_Mutation p.E411G 0.05 tolerated(0.43) benign(0.009) TCGA-DB-5280-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.47 tolerated(0.13) possibly_damaging(0.631) TCGA-DB-5280-01 17 7578466 7578466 G T TP53 Missense_Mutation p.T155N 0.50 deleterious(0.01) possibly_damaging(0.731) TCGA-DB-5280-01 18 28983444 28983444 C T DSG4 Missense_Mutation p.P495S 0.45 deleterious(0) probably_damaging(1) TCGA-DB-5280-01 19 1008916 1008916 G A GRIN3B Missense_Mutation p.A898T 0.12 tolerated(0.54) benign(0.004) TCGA-DB-5280-01 19 41183289 41183289 G C NUMBL Missense_Mutation p.A193G 0.40 deleterious(0) benign(0.04) TCGA-DB-5280-01 19 41223412 41223412 A C ITPKC Silent p.L124L 0.33 TCGA-DB-5280-01 19 55086405 55086405 C T LILRA2 Missense_Mutation p.P187L 0.48 deleterious(0.03) possibly_damaging(0.723) TCGA-DB-5280-01 19 56466833 56466833 G A NLRP8 Missense_Mutation p.G470D 0.04 tolerated(0.88) benign(0.002) TCGA-DB-5280-01 1 157665373 157665373 G T FCRL3 Missense_Mutation p.T386N 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-DB-5280-01 1 171254528 171254528 G A FMO1 Missense_Mutation p.E482K 0.37 tolerated(0.34) benign(0.015) TCGA-DB-5280-01 1 24419503 24419503 G A MYOM3 Missense_Mutation p.L342F 0.49 tolerated(0.24) benign(0.075) TCGA-DB-5280-01 1 52889613 52889613 C T ZCCHC11 Silent p.S1644S 0.50 TCGA-DB-5280-01 20 23472506 23472506 G C CST8 Missense_Mutation p.V68L 0.05 deleterious(0.02) possibly_damaging(0.575) TCGA-DB-5280-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-5280-01 2 225266432 225266432 A G FAM124B Silent p.S18S 0.05 TCGA-DB-5280-01 3 51929062 51929062 G A IQCF1 Silent p.I154I 0.03 TCGA-DB-5280-01 4 100235204 100235204 A T ADH1B Missense_Mutation p.L201Q 0.03 deleterious(0) probably_damaging(0.996) TCGA-DB-5280-01 5 16694555 16694555 C T MYO10 Missense_Mutation p.R1242H 0.12 deleterious(0) probably_damaging(0.998) TCGA-DB-5280-01 6 133015129 133015129 C G VNN1 Missense_Mutation p.K178N 0.04 deleterious(0) probably_damaging(1) TCGA-DB-5280-01 6 79944255 79944255 A C HMGN3 Intron 0.07 TCGA-DB-5280-01 9 27950110 27950110 C T LINGO2 Missense_Mutation p.C187Y 0.38 tolerated(0.05) probably_damaging(0.923) TCGA-DB-5280-01 X 132351780 132351780 C A TFDP3 Missense_Mutation p.V170L 0.05 deleterious(0) probably_damaging(0.954) TCGA-DB-5280-01 X 76938749 76938765 GTCGCCTCAAGGGTGTA - ATRX Frame_Shift_Del p.T662Dfs*4 0.81 TCGA-DB-5281-01 10 72493665 72493665 G - ADAMTS14 Frame_Shift_Del p.N416Mfs*180 0.24 TCGA-DB-5281-01 11 35231542 35231542 C T CD44 Missense_Mutation p.S516L 0.19 tolerated(0.14) benign(0.039) TCGA-DB-5281-01 11 60703701 60703701 A T TMEM132A Silent p.A799A 0.14 TCGA-DB-5281-01 11 68480850 68480850 G A MTL5 Missense_Mutation p.A349V 0.18 deleterious(0.02) probably_damaging(0.969) TCGA-DB-5281-01 11 76371899 76371899 G C LRRC32 Silent p.T246T 0.16 TCGA-DB-5281-01 11 95826019 95826019 G A MAML2 Silent p.S392S 0.65 TCGA-DB-5281-01 11 9850991 9850992 - AAGT SBF2 Frame_Shift_Ins p.Q1236Lfs*39 0.28 TCGA-DB-5281-01 12 112674788 112674788 G A HECTD4 Missense_Mutation p.A1656V 0.17 probably_damaging(0.925) TCGA-DB-5281-01 12 53609147 53609147 G A RARG Silent p.N135N 0.20 TCGA-DB-5281-01 12 57110586 57110586 G A NACA Intron 0.20 TCGA-DB-5281-01 12 81647382 81647382 C T ACSS3 Missense_Mutation p.P643L 0.14 deleterious(0) probably_damaging(1) TCGA-DB-5281-01 12 8757943 8757943 G A AICDA Nonsense_Mutation p.R99* 0.19 TCGA-DB-5281-01 13 25425618 25425618 C T RNF17 Missense_Mutation p.P1077S 0.14 deleterious(0.02) probably_damaging(0.968) TCGA-DB-5281-01 13 37015366 37015366 T C CCNA1 Missense_Mutation p.W404R 0.36 deleterious(0) probably_damaging(1) TCGA-DB-5281-01 13 37427768 37427768 C T SMAD9 Missense_Mutation p.V350M 0.12 deleterious(0.03) benign(0.407) TCGA-DB-5281-01 13 77714188 77714188 A C MYCBP2 Missense_Mutation p.I2466M 0.04 probably_damaging(0.983) TCGA-DB-5281-01 14 92268745 92268745 C T TC2N Missense_Mutation p.G108R 0.17 tolerated(0.16) benign(0.003) TCGA-DB-5281-01 15 101447398 101447398 G A ALDH1A3 Missense_Mutation p.D436N 0.63 tolerated(0.44) benign(0.016) TCGA-DB-5281-01 15 55742505 55742505 C T DYX1C1 Missense_Mutation p.R233H 0.35 deleterious(0) probably_damaging(0.996) TCGA-DB-5281-01 16 24802981 24802981 A C TNRC6A Silent p.S1006S 0.28 TCGA-DB-5281-01 16 24802982 24802982 G C TNRC6A Missense_Mutation p.A1007P 0.30 deleterious(0) probably_damaging(0.999) TCGA-DB-5281-01 17 27068158 27068158 C T NEK8 Nonsense_Mutation p.R599* 0.19 TCGA-DB-5281-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.46 deleterious(0) probably_damaging(1) TCGA-DB-5281-01 17 7579694 7579699 CCTTAC - TP53 Splice_Site p.X32_splice 0.46 TCGA-DB-5281-01 19 11303539 11303539 C T KANK2 Missense_Mutation p.S406N 0.17 deleterious(0.03) probably_damaging(0.993) TCGA-DB-5281-01 19 12244606 12244606 G A ZNF20 Missense_Mutation p.S132L 0.21 tolerated(0.24) benign(0.003) TCGA-DB-5281-01 19 15073101 15073101 G A SLC1A6 Silent p.N216N 0.23 TCGA-DB-5281-01 19 39328114 39328114 G A AC104534.3 Missense_Mutation p.R158C 0.35 deleterious(0.03) benign(0.013) TCGA-DB-5281-01 19 53854880 53854880 A G ZNF845 Missense_Mutation p.K318E 0.37 tolerated(0.17) possibly_damaging(0.559) TCGA-DB-5281-01 19 56369610 56369610 C T NLRP4 Missense_Mutation p.P284L 0.16 tolerated(0.75) benign(0.018) TCGA-DB-5281-01 19 9082521 9082521 C A MUC16 Missense_Mutation p.Q3098H 0.17 unknown(0) TCGA-DB-5281-01 1 45887455 45887455 C T TESK2 Missense_Mutation p.A96T 0.42 deleterious(0.05) probably_damaging(0.923) TCGA-DB-5281-01 1 6186737 6186737 G A CHD5 Missense_Mutation p.R1325W 0.20 deleterious(0) probably_damaging(1) TCGA-DB-5281-01 20 1426390 1426390 C T NSFL1C Missense_Mutation p.E293K 0.06 tolerated(0.1) benign(0.103) TCGA-DB-5281-01 21 35288047 35288047 G A ATP5O Silent p.S7S 0.50 TCGA-DB-5281-01 22 39826235 39826235 G A TAB1 3'UTR 0.19 TCGA-DB-5281-01 2 136389572 136389575 GTAA - R3HDM1 Splice_Site p.X233_splice 0.30 TCGA-DB-5281-01 2 165970378 165970378 T C SCN3A Missense_Mutation p.N1206S 0.24 tolerated(0.81) benign(0.155) TCGA-DB-5281-01 2 170374777 170374777 G A KLHL41 Missense_Mutation p.R485H 0.11 deleterious(0) probably_damaging(0.998) TCGA-DB-5281-01 2 180056511 180056511 T C SESTD1 Intron 0.22 TCGA-DB-5281-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-5281-01 2 228153927 228153927 G A COL4A3 Silent p.K981K 0.05 TCGA-DB-5281-01 2 56145171 56145171 T C EFEMP1 Missense_Mutation p.D49G 0.30 tolerated(0.14) benign(0.186) TCGA-DB-5281-01 2 74595916 74595916 C T DCTN1 Missense_Mutation p.R598Q 0.15 deleterious(0.03) probably_damaging(0.976) TCGA-DB-5281-01 2 85770182 85770182 A G MAT2A Intron 0.17 TCGA-DB-5281-01 2 98928738 98928738 C T VWA3B Nonsense_Mutation p.R1271* 0.20 TCGA-DB-5281-01 3 50598380 50598380 C A C3orf18 Missense_Mutation p.A126S 0.26 tolerated(0.06) possibly_damaging(0.7) TCGA-DB-5281-01 4 167810286 167810287 TT - SPOCK3 Frame_Shift_Del p.K198Efs*5 0.25 TCGA-DB-5281-01 4 68928629 68928629 T G TMPRSS11F Intron 0.45 TCGA-DB-5281-01 4 73957066 73957066 T A ANKRD17 Silent p.P2093P 0.26 TCGA-DB-5281-01 4 76836053 76836053 T C NAAA 3'UTR 0.30 TCGA-DB-5281-01 5 23527687 23527687 G A PRDM9 Silent p.K830K 0.22 TCGA-DB-5281-01 5 99897847 99897847 A T FAM174A Missense_Mutation p.D175V 0.32 deleterious(0) probably_damaging(0.998) TCGA-DB-5281-01 6 121769068 121769068 G T GJA1 Missense_Mutation p.V359L 0.19 tolerated(0.68) benign(0) TCGA-DB-5281-01 6 136683671 136683671 C A MAP7 Missense_Mutation p.R503S 0.21 deleterious(0) unknown(0) TCGA-DB-5281-01 6 139247539 139247539 G C REPS1 Missense_Mutation p.P446R 0.50 tolerated(0.15) probably_damaging(0.999) TCGA-DB-5281-01 6 29641322 29641322 T A ZFP57 Missense_Mutation p.Y189F 0.19 tolerated(0.66) benign(0.028) TCGA-DB-5281-01 6 31431475 31431475 C T HCP5 RNA 0.21 TCGA-DB-5281-01 6 43612865 43612865 G A RSPH9 Silent p.L10L 0.13 TCGA-DB-5281-01 7 73011230 73011230 C G MLXIPL Missense_Mutation p.V546L 0.07 tolerated(0.48) benign(0.018) TCGA-DB-5281-01 8 10557893 10557893 C T C8orf74 Missense_Mutation p.P266L 0.46 tolerated(0.68) benign(0.035) TCGA-DB-5281-01 8 1496849 1496849 C T DLGAP2 5'UTR 0.25 TCGA-DB-5281-01 9 101907133 101907133 A G TGFBR1 Missense_Mutation p.I365V 0.05 tolerated(1) possibly_damaging(0.787) TCGA-DB-5281-01 9 136256485 136256485 A T C9orf96 Missense_Mutation p.I166F 0.19 deleterious(0.04) benign(0.005) TCGA-DB-5281-01 9 84606491 84606491 C G SPATA31D1 Missense_Mutation p.S369C 0.18 tolerated(0.1) probably_damaging(0.991) TCGA-DB-5281-01 X 18234679 18234679 C T BEND2 Missense_Mutation p.G67D 0.88 tolerated(0.62) benign(0.007) TCGA-DB-5281-01 X 76940083 76940083 C T ATRX Nonsense_Mutation p.W222* 0.86 TCGA-DB-A4X9-01 10 108337154 108337154 G A SORCS1 Intron 0.49 TCGA-DB-A4X9-01 11 123909445 123909445 G C OR10G7 Silent p.G88G 0.08 TCGA-DB-A4X9-01 15 62256122 62256122 A C VPS13C Missense_Mutation p.I1081M 0.16 deleterious(0.01) benign(0.04) TCGA-DB-A4X9-01 15 67457635 67457635 G A SMAD3 Missense_Mutation p.E149K 0.42 tolerated(0.17) benign(0.005) TCGA-DB-A4X9-01 16 66600341 66600341 C T CMTM1 5'Flank 0.38 TCGA-DB-A4X9-01 16 67006756 67006756 G A CES3 Splice_Site p.X507_splice 0.39 TCGA-DB-A4X9-01 18 70526115 70526116 - A NETO1 Frame_Shift_Ins p.A139Cfs*2 0.27 TCGA-DB-A4X9-01 19 1828027 1828027 C T REXO1 Missense_Mutation p.R254Q 0.39 deleterious(0.01) benign(0.408) TCGA-DB-A4X9-01 19 33535237 33535237 T C RHPN2 Missense_Mutation p.K35E 0.37 deleterious(0.02) possibly_damaging(0.488) TCGA-DB-A4X9-01 19 4047729 4047730 TC - ZBTB7A 3'UTR 0.23 TCGA-DB-A4X9-01 1 114453833 114453833 C T DCLRE1B Missense_Mutation p.R207C 0.50 deleterious(0) possibly_damaging(0.773) TCGA-DB-A4X9-01 1 155885676 155885676 T - KIAA0907 Frame_Shift_Del p.T545Qfs*11 0.30 TCGA-DB-A4X9-01 1 179819995 179819995 G A TOR1AIP2 Nonsense_Mutation p.R180* 0.41 TCGA-DB-A4X9-01 1 248616320 248616320 C T OR2T2 Silent p.Y74Y 0.18 TCGA-DB-A4X9-01 1 47395834 47395834 G A CYP4A11 Missense_Mutation p.R505C 0.39 tolerated(0.12) benign(0.005) TCGA-DB-A4X9-01 1 68171150 68171151 - T GNG12 Frame_Shift_Ins p.T68Nfs*9 0.39 TCGA-DB-A4X9-01 20 29632697 29632697 T A FRG1B Missense_Mutation p.F171Y 0.06 tolerated(1) benign(0.433) TCGA-DB-A4X9-01 2 171871388 171871388 T C TLK1 Missense_Mutation p.K436R 0.15 deleterious(0) probably_damaging(0.943) TCGA-DB-A4X9-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A4X9-01 2 212587211 212587211 G C ERBB4 Missense_Mutation p.Q264E 0.54 tolerated(0.33) benign(0.007) TCGA-DB-A4X9-01 3 62355877 62355877 T C FEZF2 Missense_Mutation p.T421A 0.39 deleterious(0.04) possibly_damaging(0.874) TCGA-DB-A4X9-01 5 145608531 145608531 A - RBM27 Frame_Shift_Del p.E110Nfs*67 0.26 TCGA-DB-A4X9-01 5 491957 491957 G A SLC9A3 Silent p.A147A 0.31 TCGA-DB-A4X9-01 6 158516963 158516963 G A SYNJ2 Missense_Mutation p.S1353N 0.47 tolerated_low_confidence(0.66) benign(0.004) TCGA-DB-A4X9-01 6 5369186 5369186 G A FARS2 Missense_Mutation p.S128N 0.47 tolerated(0.09) possibly_damaging(0.488) TCGA-DB-A4X9-01 6 564139 564139 C T EXOC2 Silent p.S561S 0.15 TCGA-DB-A4X9-01 7 76826042 76826042 G A FGL2 Silent p.L292L 0.06 TCGA-DB-A4X9-01 7 94056997 94056997 A G COL1A2 Missense_Mutation p.D1109G 0.36 unknown(0) TCGA-DB-A4X9-01 X 106185949 106185949 T A MORC4 Silent p.A724A 0.40 TCGA-DB-A4X9-01 X 128926408 128926408 G A SASH3 Missense_Mutation p.D183N 0.14 deleterious(0) probably_damaging(0.999) TCGA-DB-A4X9-01 X 76907606 76907606 C A ATRX Nonsense_Mutation p.E1519* 0.40 TCGA-DB-A4X9-01 X 8993591 8993591 C A FAM9B Missense_Mutation p.V176F 0.35 deleterious(0.01) benign(0.003) TCGA-DB-A4XA-01 11 128709265 128709265 G A KCNJ1 Missense_Mutation p.R311W 0.09 deleterious(0) probably_damaging(0.999) TCGA-DB-A4XA-01 11 47256422 47256422 C T DDB2 Missense_Mutation p.R273C 0.29 deleterious(0) probably_damaging(0.998) TCGA-DB-A4XA-01 14 106174298 106174298 G T IGHA1 Missense_Mutation p.P164H 0.50 tolerated(0.06) possibly_damaging(0.741) TCGA-DB-A4XA-01 16 9857512 9857512 C T GRIN2A Missense_Mutation p.D1297N 0.13 tolerated(0.07) benign(0.016) TCGA-DB-A4XA-01 17 58512765 58512765 C G C17orf64 3'Flank 0.62 TCGA-DB-A4XA-01 17 60484520 60484520 C T EFCAB3 Missense_Mutation p.P324S 0.17 tolerated(0.08) probably_damaging(1) TCGA-DB-A4XA-01 17 79094025 79094025 G A AATK Silent p.D1237D 0.34 TCGA-DB-A4XA-01 19 42791822 42791824 GTG - CIC In_Frame_Del p.W238del 0.18 TCGA-DB-A4XA-01 19 55147968 55147968 C G LILRB1 Silent p.P559P 0.11 TCGA-DB-A4XA-01 19 9082732 9082732 C A MUC16 Missense_Mutation p.S3028I 0.42 unknown(0) TCGA-DB-A4XA-01 1 27057668 27057668 C T ARID1A Missense_Mutation p.P459L 0.53 benign(0.001) TCGA-DB-A4XA-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A4XA-01 2 73172179 73172179 C T SFXN5 Missense_Mutation p.R332Q 0.30 tolerated(0.31) benign(0.012) TCGA-DB-A4XA-01 3 130287370 130287371 - T COL6A6 Frame_Shift_Ins p.Y777Lfs*3 0.22 TCGA-DB-A4XA-01 4 79531254 79531254 T C ANXA3 Silent p.C319C 0.12 TCGA-DB-A4XA-01 5 38932056 38932056 A G OSMR Missense_Mutation p.K762E 0.08 deleterious(0.03) benign(0.061) TCGA-DB-A4XA-01 6 117053451 117053451 C A KPNA5 Missense_Mutation p.Q529K 0.07 tolerated(0.93) probably_damaging(0.992) TCGA-DB-A4XA-01 6 158507947 158507947 G A SYNJ2 Missense_Mutation p.R1090H 0.20 deleterious_low_confidence(0.03) probably_damaging(0.975) TCGA-DB-A4XA-01 7 23826191 23826191 C A STK31 Missense_Mutation p.A780D 0.07 deleterious(0) probably_damaging(0.996) TCGA-DB-A4XB-01 10 71010063 71010063 G A HKDC1 Missense_Mutation p.A530T 0.10 deleterious(0.01) possibly_damaging(0.555) TCGA-DB-A4XB-01 11 55904857 55904857 A G OR8J3 Missense_Mutation p.M113T 0.11 deleterious(0.01) benign(0.007) TCGA-DB-A4XB-01 11 61732945 61732945 C G FTH1 Missense_Mutation p.A53P 0.49 deleterious(0) probably_damaging(0.948) TCGA-DB-A4XB-01 11 67203469 67203469 G A PTPRCAP Missense_Mutation p.A119V 0.19 tolerated(0.29) benign(0.004) TCGA-DB-A4XB-01 12 117768538 117768538 C T NOS1 Missense_Mutation p.G113S 0.36 tolerated_low_confidence(0.12) benign(0.323) TCGA-DB-A4XB-01 13 108518709 108518709 T C FAM155A Missense_Mutation p.Q79R 0.42 tolerated_low_confidence(0.58) benign(0.08) TCGA-DB-A4XB-01 14 53385874 53385874 A G FERMT2 Missense_Mutation p.F120L 0.42 deleterious(0.02) probably_damaging(0.987) TCGA-DB-A4XB-01 14 80669148 80669148 G C DIO2 Missense_Mutation p.Q272E 0.47 tolerated(1) benign(0.164) TCGA-DB-A4XB-01 14 92076966 92076966 G A CATSPERB Missense_Mutation p.T819M 0.24 deleterious(0) probably_damaging(0.983) TCGA-DB-A4XB-01 15 89382124 89382124 C G ACAN Missense_Mutation p.Q101E 0.23 deleterious(0.02) unknown(0) TCGA-DB-A4XB-01 15 89382142 89382142 C A ACAN Missense_Mutation p.P107T 0.25 deleterious(0) unknown(0) TCGA-DB-A4XB-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.86 deleterious(0) probably_damaging(1) TCGA-DB-A4XB-01 18 56203630 56203630 G A ALPK2 Silent p.D1263D 0.43 TCGA-DB-A4XB-01 19 5137670 5137670 G T KDM4B Missense_Mutation p.Q808H 0.22 probably_damaging(0.934) TCGA-DB-A4XB-01 19 5791160 5791160 C T DUS3L 5'UTR 0.20 TCGA-DB-A4XB-01 1 248366912 248366912 C - OR2M3 Frame_Shift_Del p.S183Pfs*3 0.18 TCGA-DB-A4XB-01 1 34034977 34034977 G A CSMD2 Missense_Mutation p.L2712F 0.27 deleterious(0.03) probably_damaging(0.992) TCGA-DB-A4XB-01 20 2775986 2775986 G A CPXM1 Silent p.H599H 0.49 TCGA-DB-A4XB-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A4XB-01 2 228563995 228563995 C T SLC19A3 Missense_Mutation p.V146I 0.40 tolerated(0.95) benign(0.007) TCGA-DB-A4XB-01 2 239002577 239002577 A G SCLY Missense_Mutation p.R341G 0.52 deleterious(0.03) benign(0.042) TCGA-DB-A4XB-01 2 26437420 26437420 C T HADHA Silent p.A270A 0.33 TCGA-DB-A4XB-01 3 172472415 172472415 A T ECT2 Missense_Mutation p.E32V 0.21 deleterious_low_confidence(0) possibly_damaging(0.696) TCGA-DB-A4XB-01 3 2924865 2924865 A G CNTN4 Missense_Mutation p.Q230R 0.44 tolerated(0.47) benign(0.011) TCGA-DB-A4XB-01 5 218471 218471 A G SDHA Translation_Start_Site p.M1? 0.42 deleterious_low_confidence(0.02) benign(0.067) TCGA-DB-A4XB-01 5 38523540 38523540 C G LIFR Missense_Mutation p.S181T 0.32 tolerated(0.56) benign(0.001) TCGA-DB-A4XB-01 6 108279291 108279291 G A SEC63 5'UTR 0.48 TCGA-DB-A4XB-01 6 161173247 161173247 C T PLG Silent p.T742T 0.43 TCGA-DB-A4XB-01 6 35048910 35048910 C T ANKS1A Missense_Mutation p.S895F 0.30 tolerated(0.19) benign(0.396) TCGA-DB-A4XB-01 6 57058690 57058690 T A RAB23 Missense_Mutation p.Q175L 0.64 tolerated(0.19) benign(0.007) TCGA-DB-A4XB-01 6 84913701 84913701 G C KIAA1009 Missense_Mutation p.Q229E 0.16 tolerated(0.23) benign(0.015) TCGA-DB-A4XB-01 7 128482972 128482972 G A FLNC Silent p.A838A 0.38 TCGA-DB-A4XB-01 7 98497374 98497374 G T TRRAP Missense_Mutation p.V262L 0.33 benign(0.097) TCGA-DB-A4XB-01 9 34256165 34256165 T C KIF24 Missense_Mutation p.E1147G 0.40 tolerated(0.15) benign(0.025) TCGA-DB-A4XB-01 9 35685321 35685321 C A TPM2 Missense_Mutation p.V170L 0.31 deleterious(0.04) benign(0.064) TCGA-DB-A4XB-01 9 711053 711053 A G KANK1 Missense_Mutation p.N96S 0.12 tolerated(0.58) benign(0.021) TCGA-DB-A4XB-01 9 84609437 84609437 G T SPATA31D1 Missense_Mutation p.R1351I 0.44 deleterious(0) possibly_damaging(0.684) TCGA-DB-A4XB-01 9 8633423 8633423 G A PTPRD Silent p.L82L 0.61 TCGA-DB-A4XB-01 X 20156713 20156713 C A EIF1AX Missense_Mutation p.G15V 0.86 deleterious(0) unknown(0) TCGA-DB-A4XC-01 11 118267246 118267246 T G UBE4A 3'UTR 0.30 TCGA-DB-A4XC-01 11 76174901 76174901 A G C11orf30 Missense_Mutation p.K203R 0.26 deleterious(0.01) possibly_damaging(0.678) TCGA-DB-A4XC-01 12 113515358 113515358 A G DTX1 Missense_Mutation p.Q130R 0.15 deleterious(0) benign(0.006) TCGA-DB-A4XC-01 14 75386664 75386664 T G RPS6KL1 Missense_Mutation p.N92H 0.26 deleterious(0) probably_damaging(1) TCGA-DB-A4XC-01 16 58589320 58589323 TCTT - CNOT1 Frame_Shift_Del p.K908Sfs*4 0.22 TCGA-DB-A4XC-01 17 10210260 10210260 G A MYH13 Missense_Mutation p.T1764M 0.14 deleterious(0.01) possibly_damaging(0.671) TCGA-DB-A4XC-01 17 35783699 35783699 T C TADA2A Missense_Mutation p.F39S 0.14 deleterious(0.05) benign(0.424) TCGA-DB-A4XC-01 17 72843447 72843449 CTT - GRIN2C In_Frame_Del p.K667del 0.15 TCGA-DB-A4XC-01 17 7579406 7579406 G C TP53 Nonsense_Mutation p.S94* 0.67 TCGA-DB-A4XC-01 17 79674051 79674051 A G SLC25A10 Missense_Mutation p.Q154R 0.14 deleterious_low_confidence(0.01) benign(0.005) TCGA-DB-A4XC-01 19 38909083 38909083 G A RASGRP4 Missense_Mutation p.P262L 0.20 tolerated(0.05) probably_damaging(0.948) TCGA-DB-A4XC-01 1 43784936 43784936 G A TIE1 Missense_Mutation p.V985M 0.12 deleterious(0) probably_damaging(0.999) TCGA-DB-A4XC-01 20 23016513 23016513 C G SSTR4 Missense_Mutation p.F131L 0.34 deleterious(0) probably_damaging(0.999) TCGA-DB-A4XC-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A4XC-01 5 140710809 140710809 C T PCDHGA1 Silent p.A186A 0.19 TCGA-DB-A4XC-01 5 87502987 87502987 A G TMEM161B Missense_Mutation p.F153L 0.35 tolerated(0.51) benign(0.145) TCGA-DB-A4XC-01 5 96116772 96116775 GTTT - ERAP1 Frame_Shift_Del p.K859Lfs*12 0.29 TCGA-DB-A4XC-01 6 161512543 161512543 A G MAP3K4 Missense_Mutation p.M1036V 0.07 deleterious(0) possibly_damaging(0.772) TCGA-DB-A4XC-01 6 50811003 50811003 C G TFAP2B Silent p.G427G 0.30 TCGA-DB-A4XC-01 6 52109195 52109195 C A IL17F Missense_Mutation p.M11I 0.16 tolerated(0.05) benign(0.028) TCGA-DB-A4XC-01 9 35563239 35563241 AGG - FAM166B In_Frame_Del p.P70del 0.12 TCGA-DB-A4XC-01 X 76938089 76938092 TCTC - ATRX Frame_Shift_Del p.E886Lfs*18 0.63 TCGA-DB-A4XD-01 11 67400532 67400532 C T TBX10 Missense_Mutation p.V198M 0.06 deleterious(0) probably_damaging(0.989) TCGA-DB-A4XD-01 11 75282973 75282973 C T SERPINH1 Nonsense_Mutation p.Q368* 0.26 TCGA-DB-A4XD-01 12 104033987 104033987 G A STAB2 Silent p.P331P 0.29 TCGA-DB-A4XD-01 12 21327629 21327629 T A SLCO1B1 Missense_Mutation p.H115Q 0.40 deleterious(0.02) probably_damaging(1) TCGA-DB-A4XD-01 12 95926723 95926723 C T USP44 Missense_Mutation p.R437H 0.12 tolerated(0.45) benign(0.001) TCGA-DB-A4XD-01 14 65409342 65409342 T G GPX2 Missense_Mutation p.N35H 0.04 deleterious(0) probably_damaging(0.999) TCGA-DB-A4XD-01 15 94927307 94927307 A G MCTP2 Missense_Mutation p.T547A 0.09 deleterious(0) possibly_damaging(0.898) TCGA-DB-A4XD-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.87 deleterious(0) probably_damaging(1) TCGA-DB-A4XD-01 17 7578508 7578508 C T TP53 Missense_Mutation p.C141Y 0.06 deleterious(0) probably_damaging(1) TCGA-DB-A4XD-01 19 42873066 42873066 G A MEGF8 Missense_Mutation p.G2118R 0.47 deleterious(0) probably_damaging(0.966) TCGA-DB-A4XD-01 19 50365042 50365042 C T PNKP Missense_Mutation p.A429T 0.29 tolerated(0.12) benign(0.003) TCGA-DB-A4XD-01 19 54314482 54314482 T A NLRP12 Missense_Mutation p.N144I 0.25 deleterious(0) probably_damaging(0.999) TCGA-DB-A4XD-01 19 6187326 6187326 C T ACSBG2 Missense_Mutation p.P525S 0.08 tolerated(0.1) benign(0.005) TCGA-DB-A4XD-01 1 220955136 220955136 C T MARC2 Missense_Mutation p.P301S 0.06 deleterious(0.04) probably_damaging(0.996) TCGA-DB-A4XD-01 1 33282864 33282864 T G YARS 5'UTR 0.15 TCGA-DB-A4XD-01 20 744513 744513 G A SLC52A3 Silent p.C234C 0.06 TCGA-DB-A4XD-01 2 100915722 100915722 C T LONRF2 Missense_Mutation p.D443N 0.14 deleterious(0) benign(0.395) TCGA-DB-A4XD-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-DB-A4XD-01 2 44099378 44099378 G A ABCG8 Missense_Mutation p.D382N 0.17 tolerated(0.21) benign(0.004) TCGA-DB-A4XD-01 5 126887329 126887329 G T PRRC1 Intron 0.42 TCGA-DB-A4XD-01 5 136993906 136993906 T C KLHL3 Missense_Mutation p.M273V 0.39 deleterious(0) benign(0.206) TCGA-DB-A4XD-01 5 140480514 140480514 A G PCDHB3 Missense_Mutation p.E94G 0.06 deleterious_low_confidence(0.05) benign(0.013) TCGA-DB-A4XD-01 5 1416304 1416304 C T SLC6A3 Missense_Mutation p.A314T 0.13 deleterious(0) probably_damaging(0.959) TCGA-DB-A4XD-01 6 136588241 136588241 T G BCLAF1 Missense_Mutation p.T824P 0.10 tolerated(0.49) possibly_damaging(0.702) TCGA-DB-A4XD-01 6 167752140 167752140 T C TTLL2 Missense_Mutation p.L18S 0.38 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-DB-A4XD-01 6 18236804 18236804 T G DEK Missense_Mutation p.D309A 0.10 deleterious(0) probably_damaging(0.968) TCGA-DB-A4XD-01 7 130023308 130023308 C T CPA1 Missense_Mutation p.A187V 0.26 deleterious(0) probably_damaging(0.997) TCGA-DB-A4XD-01 7 70800596 70800596 C T WBSCR17 Missense_Mutation p.P100L 0.07 deleterious(0.03) benign(0.05) TCGA-DB-A4XD-01 8 139768055 139768055 C T COL22A1 Silent p.A640A 0.06 TCGA-DB-A4XD-01 8 8750372 8750372 T G MFHAS1 Missense_Mutation p.E66A 0.17 tolerated(0.07) benign(0.206) TCGA-DB-A4XD-01 8 95503832 95503832 C T KIAA1429 Missense_Mutation p.R1705K 0.05 tolerated(0.06) probably_damaging(0.991) TCGA-DB-A4XD-01 9 139291430 139291430 G A SNAPC4 Missense_Mutation p.S59L 0.31 tolerated(1) benign(0.003) TCGA-DB-A4XD-01 9 713193 713193 G A KANK1 Silent p.E809E 0.09 TCGA-DB-A4XD-01 X 152813393 152813393 C T ATP2B3 Silent p.P353P 0.17 TCGA-DB-A4XD-01 X 41084138 41084138 A G USP9X Missense_Mutation p.T2299A 0.08 tolerated(0.35) probably_damaging(0.952) TCGA-DB-A4XD-01 X 76814303 76814306 ATAA - ATRX Frame_Shift_Del p.F2113Sfs*9 0.37 TCGA-DB-A4XD-01 X 76909677 76909680 CTTT - ATRX Frame_Shift_Del p.K1409Qfs*80 0.16 TCGA-DB-A4XD-01 X 76937770 76937770 T - ATRX Frame_Shift_Del p.K993Rfs*10 0.11 TCGA-DB-A4XD-01 X 76940500 76940500 T C ATRX Splice_Site p.X199_splice 0.13 TCGA-DB-A4XE-01 10 118357417 118357417 G T PNLIPRP1 Missense_Mutation p.D218Y 0.26 deleterious(0) probably_damaging(1) TCGA-DB-A4XE-01 10 49618135 49618135 A G MAPK8 Missense_Mutation p.H125R 0.10 deleterious(0.01) probably_damaging(1) TCGA-DB-A4XE-01 11 95724824 95724824 G C MAML2 Missense_Mutation p.P735A 0.05 unknown(0) TCGA-DB-A4XE-01 12 12291381 12291381 T A LRP6 Missense_Mutation p.K1162I 0.34 deleterious(0) benign(0.13) TCGA-DB-A4XE-01 13 19752464 19752464 C T TUBA3C Silent p.A99A 0.07 TCGA-DB-A4XE-01 14 90455299 90455299 C T TDP1 Silent p.V394V 0.07 TCGA-DB-A4XE-01 16 15661873 15661873 G A C16orf45 Missense_Mutation p.M88I 0.44 tolerated(0.13) benign(0.157) TCGA-DB-A4XE-01 16 2014319 2014319 G C RPS2 Missense_Mutation p.I75M 0.33 deleterious(0.02) possibly_damaging(0.9) TCGA-DB-A4XE-01 16 28510981 28510981 G A IL27 Silent p.P241P 0.12 TCGA-DB-A4XE-01 17 2282481 2282481 C A SGSM2 Silent p.I1017I 0.27 TCGA-DB-A4XE-01 17 56393488 56393488 T C BZRAP1 Missense_Mutation p.N665S 0.09 deleterious(0) probably_damaging(0.969) TCGA-DB-A4XE-01 17 7577559 7577559 G T TP53 Missense_Mutation p.S241Y 0.39 deleterious(0) probably_damaging(1) TCGA-DB-A4XE-01 17 7579592 7579592 T - TP53 Splice_Site p.X33_splice 0.32 TCGA-DB-A4XE-01 18 2891077 2891077 G A EMILIN2 Missense_Mutation p.V318M 0.47 deleterious(0) probably_damaging(0.999) TCGA-DB-A4XE-01 18 29172888 29172888 G A TTR Missense_Mutation p.M33I 0.08 tolerated(0.09) possibly_damaging(0.617) TCGA-DB-A4XE-01 19 22939882 22939882 G A ZNF99 3'Flank 0.04 TCGA-DB-A4XE-01 1 114510515 114510515 C A HIPK1 Missense_Mutation p.Q837K 0.24 tolerated(0.25) benign(0.07) TCGA-DB-A4XE-01 1 229683292 229683292 T C ABCB10 Missense_Mutation p.D292G 0.29 deleterious(0.02) probably_damaging(0.914) TCGA-DB-A4XE-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A4XE-01 3 119132892 119132892 T G ARHGAP31 Missense_Mutation p.S706A 0.24 tolerated(0.13) benign(0.014) TCGA-DB-A4XE-01 3 46009087 46009087 C T FYCO1 Missense_Mutation p.S580N 0.03 tolerated(0.46) benign(0.013) TCGA-DB-A4XE-01 3 77617553 77617553 C T ROBO2 Silent p.L663L 0.35 TCGA-DB-A4XE-01 4 90170303 90170303 G A GPRIN3 Missense_Mutation p.A320V 0.04 deleterious(0.02) benign(0.124) TCGA-DB-A4XE-01 5 161119014 161119014 A T GABRA6 Silent p.S298S 0.07 TCGA-DB-A4XE-01 5 176918075 176918075 C T PDLIM7 Silent p.P157P 0.36 TCGA-DB-A4XE-01 7 42007295 42007295 T C GLI3 Missense_Mutation p.H777R 0.25 deleterious(0.01) benign(0.15) TCGA-DB-A4XE-01 8 144776021 144776021 C T ZNF707 Missense_Mutation p.T146M 0.07 tolerated(0.1) benign(0.051) TCGA-DB-A4XE-01 8 17409358 17409358 C A SLC7A2 Silent p.V346V 0.31 TCGA-DB-A4XE-01 8 75272416 75272416 C G GDAP1 Missense_Mutation p.P119A 0.61 tolerated(0.84) benign(0.197) TCGA-DB-A4XE-01 X 105178375 105178375 T A NRK Missense_Mutation p.N1147K 0.40 tolerated(0.23) benign(0.008) TCGA-DB-A4XE-01 X 151900225 151900225 G T MAGEA12 Missense_Mutation p.D192E 0.06 tolerated(0.06) benign(0.288) TCGA-DB-A4XE-01 X 70367670 70367670 T A NLGN3 Missense_Mutation p.L24H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-DB-A4XE-01 X 76944338 76944339 GT - ATRX Frame_Shift_Del p.H189Pfs*9 0.20 TCGA-DB-A4XF-01 10 68857549 68857549 G A LRRTM3 Missense_Mutation p.A581T 0.05 possibly_damaging(0.483) TCGA-DB-A4XF-01 11 118014578 118014578 C T SCN4B Missense_Mutation p.A145T 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-DB-A4XF-01 11 118919446 118919446 C T HYOU1 Silent p.K715K 0.08 TCGA-DB-A4XF-01 11 36057651 36057652 AG - LDLRAD3 Splice_Site p.X17_splice 0.11 TCGA-DB-A4XF-01 12 100656178 100656178 A C DEPDC4 Nonsense_Mutation p.Y188* 0.24 TCGA-DB-A4XF-01 12 12673837 12673840 TAAT - DUSP16 Frame_Shift_Del p.I65Qfs*21 0.10 TCGA-DB-A4XF-01 12 133313477 133313477 A C ANKLE2 Splice_Site p.X531_splice 0.07 TCGA-DB-A4XF-01 12 67704094 67704094 A - CAND1 Frame_Shift_Del p.K1120Rfs*3 0.30 TCGA-DB-A4XF-01 12 70932069 70932069 G A PTPRB Intron 0.16 TCGA-DB-A4XF-01 14 20215861 20215861 G T OR4Q3 Missense_Mutation p.S92I 0.11 tolerated(0.11) benign(0) TCGA-DB-A4XF-01 14 65260091 65260091 G A SPTB Missense_Mutation p.R764W 0.06 deleterious(0) probably_damaging(0.952) TCGA-DB-A4XF-01 15 73925609 73925609 G A NPTN 5'UTR 0.49 TCGA-DB-A4XF-01 16 17235124 17235124 G A XYLT1 Silent p.G491G 0.05 TCGA-DB-A4XF-01 16 57732851 57732851 C T CCDC135 Missense_Mutation p.A98V 0.33 deleterious(0.05) probably_damaging(0.988) TCGA-DB-A4XF-01 16 89713000 89713000 C T CHMP1A Silent p.L168L 0.37 TCGA-DB-A4XF-01 17 10533480 10533480 G T MYH3 Missense_Mutation p.Q1831K 0.04 deleterious(0.02) benign(0.009) TCGA-DB-A4XF-01 17 39471743 39471743 C T KRTAP17-1 Missense_Mutation p.G54R 0.55 unknown(0) TCGA-DB-A4XF-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.80 deleterious(0) probably_damaging(1) TCGA-DB-A4XF-01 19 53884333 53884333 T C ZNF525 Silent p.S167S 0.41 TCGA-DB-A4XF-01 1 220344243 220344245 CTT - RAB3GAP2 In_Frame_Del p.E932del 0.37 TCGA-DB-A4XF-01 1 32688225 32688225 G A EIF3I Silent p.K30K 0.34 TCGA-DB-A4XF-01 1 94655635 94655635 G C ARHGAP29 Missense_Mutation p.T429R 0.17 deleterious(0) probably_damaging(0.998) TCGA-DB-A4XF-01 21 46011886 46011886 G A KRTAP10-6 Silent p.C160C 0.08 TCGA-DB-A4XF-01 2 100911951 100911951 G C LONRF2 Missense_Mutation p.P514R 0.08 deleterious(0) benign(0.186) TCGA-DB-A4XF-01 2 162036208 162036208 C T TANK Missense_Mutation p.A12V 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-DB-A4XF-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-DB-A4XF-01 2 47233147 47233149 CCT - TTC7A In_Frame_Del p.L386del 0.10 TCGA-DB-A4XF-01 3 133525498 133525500 TTC - SRPRB In_Frame_Del p.L69del 0.27 TCGA-DB-A4XF-01 3 66431341 66431342 CA - SLC25A26 3'Flank 0.18 TCGA-DB-A4XF-01 4 148575687 148575687 A G PRMT10 Missense_Mutation p.M454T 0.29 tolerated(0.62) benign(0) TCGA-DB-A4XF-01 4 68919535 68919535 G A TMPRSS11F 3'UTR 0.33 TCGA-DB-A4XF-01 5 102440512 102440513 TG - GIN1 Frame_Shift_Del p.T124Sfs*22 0.12 TCGA-DB-A4XF-01 5 138723452 138723452 G A MZB1 3'UTR 0.40 TCGA-DB-A4XF-01 5 179201423 179201423 T C MAML1 Missense_Mutation p.F866L 0.35 deleterious(0.01) probably_damaging(0.96) TCGA-DB-A4XF-01 6 29694761 29694761 A G HLA-F Missense_Mutation p.S380G 0.41 tolerated_low_confidence(0.94) benign(0) TCGA-DB-A4XF-01 8 67086746 67086746 C T TRIM55 Missense_Mutation p.A522V 0.29 tolerated_low_confidence(0.2) benign(0.086) TCGA-DB-A4XF-01 9 34371509 34371509 C T KIAA1161 Missense_Mutation p.R444Q 0.29 tolerated(0.62) benign(0.008) TCGA-DB-A4XF-01 9 36170045 36170045 C A CCIN Silent p.R182R 0.35 TCGA-DB-A4XF-01 X 103495293 103495293 G A ESX1 Silent p.G279G 0.04 TCGA-DB-A4XF-01 X 105167230 105167230 A T NRK Missense_Mutation p.I912F 0.06 deleterious(0.02) benign(0.186) TCGA-DB-A4XF-01 X 117959414 117959414 T C ZCCHC12 Silent p.N69N 0.04 TCGA-DB-A4XF-01 X 154194745 154194745 C T F8 Silent p.E409E 0.32 TCGA-DB-A4XF-01 X 65253352 65253352 C T VSIG4 Missense_Mutation p.V126M 0.38 tolerated(0.21) benign(0.135) TCGA-DB-A4XG-01 11 1270406 1270406 C T MUC5B Missense_Mutation p.T4099M 0.49 unknown(0) TCGA-DB-A4XG-01 12 14959571 14959571 C T SMCO3 Missense_Mutation p.R15Q 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-DB-A4XG-01 15 62214622 62214622 C A VPS13C Missense_Mutation p.A2317S 0.16 tolerated(0.24) benign(0.003) TCGA-DB-A4XG-01 15 63966612 63966612 G A HERC1 Missense_Mutation p.A2592V 0.24 possibly_damaging(0.636) TCGA-DB-A4XG-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-DB-A4XG-01 16 66950296 66950296 C T CDH16 Missense_Mutation p.V56M 0.36 tolerated(0.06) benign(0.014) TCGA-DB-A4XG-01 17 29665752 29665755 ACTT - NF1 Frame_Shift_Del p.Y2285Tfs*5 0.79 TCGA-DB-A4XG-01 17 35902548 35902549 GA - SYNRG Frame_Shift_Del p.P910Ifs*27 0.18 TCGA-DB-A4XG-01 18 14132356 14132356 G A ZNF519 5'UTR 0.06 TCGA-DB-A4XG-01 19 42381258 42381258 C T CD79A 5'UTR 0.90 TCGA-DB-A4XG-01 19 6707823 6707823 C T C3 Missense_Mutation p.A655T 0.47 tolerated(0.36) benign(0.002) TCGA-DB-A4XG-01 19 7809893 7809893 G A CD209 Silent p.H278H 0.44 TCGA-DB-A4XG-01 1 40148368 40148368 C T HPCAL4 Missense_Mutation p.R139H 0.05 deleterious(0.02) possibly_damaging(0.76) TCGA-DB-A4XG-01 22 42486882 42486882 G T NDUFA6 5'UTR 0.25 TCGA-DB-A4XG-01 2 170112638 170112638 C T LRP2 Silent p.P916P 0.10 TCGA-DB-A4XG-01 2 218712917 218712917 A G TNS1 Missense_Mutation p.W650R 0.12 deleterious(0) probably_damaging(0.999) TCGA-DB-A4XG-01 2 42553330 42553330 G T EML4 Missense_Mutation p.R760L 0.18 tolerated(0.29) possibly_damaging(0.824) TCGA-DB-A4XG-01 3 14922122 14922122 T C FGD5 Missense_Mutation p.L901P 0.50 deleterious(0.03) probably_damaging(1) TCGA-DB-A4XG-01 5 37022199 37022199 C A NIPBL Missense_Mutation p.A1792D 0.25 deleterious(0) probably_damaging(0.998) TCGA-DB-A4XG-01 6 100868815 100868815 G A SIM1 Silent p.L340L 0.32 TCGA-DB-A4XG-01 6 144508431 144508431 G A STX11 Missense_Mutation p.D223N 0.08 tolerated(0.05) probably_damaging(0.945) TCGA-DB-A4XG-01 7 100014771 100014773 AAG - ZCWPW1 In_Frame_Del p.S132del 0.23 TCGA-DB-A4XG-01 7 91981897 91981897 C T ANKIB1 Silent p.L446L 0.47 TCGA-DB-A4XG-01 8 134225313 134225313 C T WISP1 Silent p.I92I 0.39 TCGA-DB-A4XG-01 8 99045826 99045826 T G MATN2 Missense_Mutation p.C918W 0.47 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DB-A4XG-01 9 123342218 123342218 A G CDK5RAP2 Silent p.P13P 0.25 TCGA-DB-A4XG-01 9 139412278 139412278 C T NOTCH1 Missense_Mutation p.C456Y 0.63 deleterious(0) probably_damaging(1) TCGA-DB-A4XG-01 X 107823773 107823773 G T COL4A5 Missense_Mutation p.G264V 0.92 unknown(0) TCGA-DB-A4XG-01 X 19380935 19380938 CTCT - MAP3K15 Frame_Shift_Del p.R1199Sfs*10 0.38 TCGA-DB-A4XG-01 X 84586012 84586012 C T POF1B Missense_Mutation p.R266H 0.84 deleterious(0.05) probably_damaging(0.999) TCGA-DB-A4XH-01 10 26500781 26500781 G A MYO3A Silent p.A1580A 0.22 TCGA-DB-A4XH-01 10 37430910 37430910 C T ANKRD30A Missense_Mutation p.T306M 0.42 tolerated(0.44) benign(0.277) TCGA-DB-A4XH-01 12 26639240 26639240 C G ITPR2 Missense_Mutation p.A1870P 0.20 deleterious(0.05) benign(0.005) TCGA-DB-A4XH-01 12 39947886 39947886 C T ABCD2 Missense_Mutation p.R684H 0.07 tolerated(0.11) benign(0.022) TCGA-DB-A4XH-01 12 91546926 91546926 G A DCN Silent p.N231N 0.10 TCGA-DB-A4XH-01 13 21563346 21563346 G A LATS2 Silent p.Y191Y 0.09 TCGA-DB-A4XH-01 14 24619440 24619440 G T RNF31 Missense_Mutation p.R327L 0.38 deleterious(0) possibly_damaging(0.758) TCGA-DB-A4XH-01 14 24619441 24619441 A T RNF31 Silent p.R327R 0.37 TCGA-DB-A4XH-01 14 55907119 55907119 C T TBPL2 Missense_Mutation p.A49T 0.06 tolerated_low_confidence(0.12) benign(0.005) TCGA-DB-A4XH-01 14 65260496 65260496 G A SPTB Missense_Mutation p.R629W 0.05 deleterious(0) probably_damaging(1) TCGA-DB-A4XH-01 15 34640764 34640764 C T NUTM1 Missense_Mutation p.S204F 0.07 deleterious(0.05) benign(0.208) TCGA-DB-A4XH-01 15 67073541 67073541 A T SMAD6 Missense_Mutation p.I387F 0.10 deleterious(0) probably_damaging(0.999) TCGA-DB-A4XH-01 16 47730353 47730353 C A PHKB Missense_Mutation p.T986K 0.18 deleterious(0) benign(0.031) TCGA-DB-A4XH-01 16 50756571 50756571 C A NOD2 Missense_Mutation p.A918D 0.13 deleterious(0) probably_damaging(0.999) TCGA-DB-A4XH-01 16 66977769 66977770 - T CES2 Frame_Shift_Ins p.W572Lfs*46 0.08 TCGA-DB-A4XH-01 16 7383041 7383041 C T RBFOX1 Silent p.G13G 0.05 TCGA-DB-A4XH-01 17 39845179 39845179 C T EIF1 5'UTR 0.35 TCGA-DB-A4XH-01 18 54446754 54446754 C T WDR7 Nonsense_Mutation p.R1014* 0.12 TCGA-DB-A4XH-01 19 15791259 15791259 C T CYP4F12 Missense_Mutation p.T152M 0.10 deleterious(0.01) probably_damaging(0.957) TCGA-DB-A4XH-01 19 40895408 40895408 G A HIPK4 Silent p.H134H 0.12 TCGA-DB-A4XH-01 19 54610133 54610139 ATGGGAA GTT NDUFA3 Frame_Shift_Del p.D60Gfs*21 0.79 TCGA-DB-A4XH-01 19 9204546 9204546 C T OR1M1 Missense_Mutation p.T209M 0.40 tolerated(0.14) benign(0.031) TCGA-DB-A4XH-01 1 19168269 19168269 G A TAS1R2 Silent p.F515F 0.36 TCGA-DB-A4XH-01 1 207252472 207252472 T - PFKFB2 3'Flank 0.29 TCGA-DB-A4XH-01 1 226553702 226553702 T C PARP1 Missense_Mutation p.N820D 0.11 deleterious(0.01) possibly_damaging(0.843) TCGA-DB-A4XH-01 1 238048465 238048465 C T ZP4 Silent p.P437P 0.33 TCGA-DB-A4XH-01 20 23016949 23016949 G A SSTR4 Missense_Mutation p.V277M 0.04 tolerated(0.08) benign(0.269) TCGA-DB-A4XH-01 20 9561502 9561502 C T PAK7 Missense_Mutation p.V94M 0.39 deleterious(0) probably_damaging(0.994) TCGA-DB-A4XH-01 2 103281660 103281660 G A SLC9A2 Silent p.G285G 0.46 TCGA-DB-A4XH-01 2 175613522 175613522 A G CHRNA1 Missense_Mutation p.I368T 0.50 deleterious(0.01) benign(0.297) TCGA-DB-A4XH-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A4XH-01 2 209200822 209200823 - GTCTTC PIKFYVE In_Frame_Ins p.S1475_S1476dup 0.27 TCGA-DB-A4XH-01 2 241828002 241828002 C T C2orf54 Missense_Mutation p.A320T 0.09 deleterious(0.01) possibly_damaging(0.699) TCGA-DB-A4XH-01 2 45774700 45774700 C T SRBD1 Missense_Mutation p.R576Q 0.44 tolerated(0.15) benign(0.01) TCGA-DB-A4XH-01 2 85818866 85818866 C T VAMP5 Missense_Mutation p.R8W 0.10 deleterious(0) probably_damaging(0.959) TCGA-DB-A4XH-01 3 114058129 114058129 T C ZBTB20 Missense_Mutation p.N650S 0.45 deleterious(0.01) probably_damaging(0.973) TCGA-DB-A4XH-01 3 187447676 187447676 G A BCL6 Missense_Mutation p.P173S 0.04 tolerated(0.56) benign(0.004) TCGA-DB-A4XH-01 3 36874112 36874112 C T TRANK1 Missense_Mutation p.R2277H 0.35 tolerated(0.46) benign(0.006) TCGA-DB-A4XH-01 3 46945269 46945269 A G PTH1R 3'UTR 0.50 TCGA-DB-A4XH-01 3 47384261 47384261 G A KLHL18 Missense_Mutation p.V427I 0.30 tolerated(0.16) benign(0.04) TCGA-DB-A4XH-01 3 48690585 48690585 C T CELSR3 Silent p.R1828R 0.05 TCGA-DB-A4XH-01 3 98001915 98001915 A G OR5H2 Missense_Mutation p.I62V 0.36 deleterious(0.02) benign(0.015) TCGA-DB-A4XH-01 4 2065803 2065803 C G NAT8L Silent p.L286L 0.39 TCGA-DB-A4XH-01 4 4199453 4199453 G A OTOP1 Missense_Mutation p.R370W 0.07 tolerated(0.33) benign(0.009) TCGA-DB-A4XH-01 5 1081825 1081825 C T SLC12A7 Silent p.A388A 0.10 TCGA-DB-A4XH-01 5 31323107 31323107 C T CDH6 Nonsense_Mutation p.R689* 0.08 TCGA-DB-A4XH-01 6 44387260 44387260 G C CDC5L Missense_Mutation p.E389D 0.24 tolerated(0.28) benign(0.081) TCGA-DB-A4XH-01 7 65705779 65705779 C T TPST1 Missense_Mutation p.R123C 0.39 deleterious(0) probably_damaging(1) TCGA-DB-A4XH-01 9 116931263 116931263 C T COL27A1 Silent p.T476T 0.40 TCGA-DB-A4XH-01 9 33442299 33442299 G A AQP3 Missense_Mutation p.T237M 0.09 deleterious(0.02) probably_damaging(0.912) TCGA-DB-A4XH-01 X 125299120 125299120 C T DCAF12L2 Missense_Mutation p.R263H 0.05 tolerated(0.59) benign(0.005) TCGA-DB-A4XH-01 X 129354412 129354412 A G ZNF280C Silent p.L480L 0.05 TCGA-DB-A4XH-01 X 133700590 133700590 G C PLAC1 Silent p.P41P 0.43 TCGA-DB-A4XH-01 X 140785691 140785691 G T SPANXD Missense_Mutation p.N75K 0.06 deleterious(0.01) probably_damaging(0.995) TCGA-DB-A4XH-01 X 152226071 152226071 T C PNMA3 Missense_Mutation p.L220P 0.03 deleterious(0) probably_damaging(0.997) TCGA-DB-A4XH-01 X 19368154 19368154 C T PDHA1 Nonsense_Mutation p.R111* 0.04 TCGA-DB-A4XH-01 X 49126932 49126932 G A PPP1R3F Silent p.P200P 0.49 TCGA-DB-A4XH-01 X 64721964 64721964 C A ZC3H12B Silent p.V462V 0.09 TCGA-DB-A64L-01 10 116199848 116199848 T C ABLIM1 Missense_Mutation p.D687G 0.42 tolerated(0.06) benign(0) TCGA-DB-A64L-01 10 91503566 91503566 T C KIF20B Missense_Mutation p.V1266A 0.07 deleterious(0) possibly_damaging(0.547) TCGA-DB-A64L-01 11 124740574 124740574 C T ROBO3 Missense_Mutation p.A328V 0.08 tolerated(0.06) probably_damaging(0.993) TCGA-DB-A64L-01 11 20907004 20907004 T C NELL1 Missense_Mutation p.V174A 0.38 deleterious(0) possibly_damaging(0.5) TCGA-DB-A64L-01 11 35198139 35198139 C T CD44 Missense_Mutation p.R29C 0.36 deleterious(0) probably_damaging(0.999) TCGA-DB-A64L-01 11 63487943 63487943 G A RTN3 Missense_Mutation p.A657T 0.06 tolerated(0.21) benign(0.021) TCGA-DB-A64L-01 11 63987951 63987951 C T FERMT3 Missense_Mutation p.S456F 0.22 deleterious(0) probably_damaging(0.993) TCGA-DB-A64L-01 11 67266176 67266176 C T PITPNM1 Missense_Mutation p.A459T 0.38 tolerated(0.55) benign(0.01) TCGA-DB-A64L-01 11 77672047 77672047 G A INTS4 Silent p.Y203Y 0.34 TCGA-DB-A64L-01 12 120594273 120594273 C T GCN1L1 Missense_Mutation p.V1102M 0.19 benign(0.14) TCGA-DB-A64L-01 12 122691360 122691360 G A B3GNT4 Missense_Mutation p.E188K 0.34 deleterious(0) possibly_damaging(0.755) TCGA-DB-A64L-01 12 124824906 124824906 G A NCOR2 Missense_Mutation p.R1808W 0.36 probably_damaging(0.994) TCGA-DB-A64L-01 12 6701875 6701875 G A CHD4 Missense_Mutation p.P921S 0.09 deleterious(0.05) probably_damaging(0.96) TCGA-DB-A64L-01 13 20797370 20797370 C T GJB6 Missense_Mutation p.V84I 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-DB-A64L-01 14 20779890 20779890 A G CCNB1IP1 Missense_Mutation p.L218S 0.45 tolerated_low_confidence(0.84) benign(0.025) TCGA-DB-A64L-01 14 21526423 21526423 C G RNASE8 Missense_Mutation p.H124Q 0.13 tolerated(0.61) benign(0.005) TCGA-DB-A64L-01 14 21971990 21971990 G A METTL3 Silent p.T45T 0.10 TCGA-DB-A64L-01 14 23451447 23451447 C T RP11-298I3.5 Missense_Mutation p.R8H 0.07 tolerated(0.09) benign(0.011) TCGA-DB-A64L-01 14 61446302 61446302 A C TRMT5 Missense_Mutation p.I105R 0.12 tolerated(0.31) benign(0.025) TCGA-DB-A64L-01 15 31318363 31318363 C T TRPM1 Missense_Mutation p.R1220H 0.10 deleterious(0) probably_damaging(0.995) TCGA-DB-A64L-01 15 41247728 41247728 C T CHAC1 Missense_Mutation p.A184V 0.08 tolerated(1) benign(0.097) TCGA-DB-A64L-01 15 48063381 48063381 A G SEMA6D Missense_Mutation p.D874G 0.07 tolerated(0.08) probably_damaging(0.995) TCGA-DB-A64L-01 15 63637713 63637713 G A CA12 Missense_Mutation p.S131F 0.30 deleterious(0) probably_damaging(1) TCGA-DB-A64L-01 16 10641500 10641500 C T EMP2 5'UTR 0.11 TCGA-DB-A64L-01 16 30680745 30680745 G A FBRS Missense_Mutation p.G908R 0.44 possibly_damaging(0.849) TCGA-DB-A64L-01 16 3339765 3339765 G A ZNF263 Missense_Mutation p.R420H 0.36 tolerated(1) benign(0) TCGA-DB-A64L-01 16 66974478 66974478 G A CES2 Silent p.T296T 0.41 TCGA-DB-A64L-01 16 85952327 85952327 C T IRF8 Silent p.N302N 0.15 TCGA-DB-A64L-01 17 10368903 10368903 G T MYH4 Missense_Mutation p.L121I 0.11 deleterious(0.02) possibly_damaging(0.775) TCGA-DB-A64L-01 17 11593161 11593161 G A DNAH9 Missense_Mutation p.R1341Q 0.41 benign(0.029) TCGA-DB-A64L-01 17 1578465 1578465 T C PRPF8 Missense_Mutation p.N1014S 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-DB-A64L-01 17 1798390 1798390 G A RPA1 Splice_Site p.X582_splice 0.39 TCGA-DB-A64L-01 17 25932758 25932758 A G KSR1 Missense_Mutation p.N523S 0.09 tolerated(0.28) probably_damaging(0.952) TCGA-DB-A64L-01 17 5437298 5437298 C T NLRP1 Missense_Mutation p.V991M 0.04 tolerated(0.2) benign(0.066) TCGA-DB-A64L-01 17 61949673 61949673 T A CSH2 Missense_Mutation p.D156V 0.10 deleterious(0) possibly_damaging(0.735) TCGA-DB-A64L-01 18 13826500 13826500 G A MC5R Missense_Mutation p.V246M 0.05 deleterious(0) possibly_damaging(0.695) TCGA-DB-A64L-01 18 42531834 42531834 C T SETBP1 Silent p.C843C 0.08 TCGA-DB-A64L-01 18 47800597 47800597 G A MBD1 Missense_Mutation p.R369C 0.12 deleterious(0) probably_damaging(0.997) TCGA-DB-A64L-01 18 48327796 48327796 A T MRO Missense_Mutation p.F184I 0.43 deleterious(0) possibly_damaging(0.537) TCGA-DB-A64L-01 19 12763077 12763077 C T MAN2B1 Missense_Mutation p.A646T 0.06 deleterious(0) possibly_damaging(0.817) TCGA-DB-A64L-01 19 1605408 1605408 T C UQCR11 Translation_Start_Site p.M1? 0.24 deleterious(0.02) benign(0.433) TCGA-DB-A64L-01 19 22155989 22155989 T C ZNF208 Missense_Mutation p.K616R 0.09 deleterious(0.02) possibly_damaging(0.687) TCGA-DB-A64L-01 19 33444650 33444650 C T CEP89 Silent p.L121L 0.09 TCGA-DB-A64L-01 19 41860567 41860567 C T B9D2 3'UTR 0.45 TCGA-DB-A64L-01 19 42793215 42793218 CAGT - CIC Frame_Shift_Del p.S370Rfs*6 0.65 TCGA-DB-A64L-01 19 51330971 51330971 G A KLK15 Silent p.G48G 0.08 TCGA-DB-A64L-01 19 56515215 56515215 C A NLRP5 Missense_Mutation p.Q66K 0.13 tolerated(0.23) possibly_damaging(0.626) TCGA-DB-A64L-01 19 579583 579583 A T BSG Missense_Mutation p.T167S 0.09 tolerated(0.67) benign(0.017) TCGA-DB-A64L-01 19 59028371 59028371 C T ZBTB45 Missense_Mutation p.E224K 0.14 tolerated(0.44) benign(0.097) TCGA-DB-A64L-01 1 159409585 159409586 AA - OR10J1 Frame_Shift_Del p.N16Lfs*6 0.13 TCGA-DB-A64L-01 1 161681131 161681131 C T FCRLA Silent p.P145P 0.30 TCGA-DB-A64L-01 1 186092329 186092329 C G HMCN1 Missense_Mutation p.T4159R 0.23 benign(0.077) TCGA-DB-A64L-01 1 229666080 229666080 C T ABCB10 Missense_Mutation p.R504H 0.22 deleterious(0) probably_damaging(1) TCGA-DB-A64L-01 1 28208811 28208811 C T THEMIS2 Missense_Mutation p.R326W 0.20 deleterious(0) probably_damaging(0.997) TCGA-DB-A64L-01 1 45291949 45291949 G A PTCH2 Silent p.G1029G 0.49 TCGA-DB-A64L-01 1 78432436 78432436 C T FUBP1 Splice_Site p.X139_splice 0.39 TCGA-DB-A64L-01 20 23065099 23065099 G A CD93 Silent p.D577D 0.30 TCGA-DB-A64L-01 20 36560093 36560093 A G VSTM2L Missense_Mutation p.M60V 0.16 deleterious(0.04) benign(0.422) TCGA-DB-A64L-01 20 3674159 3674159 C A SIGLEC1 Missense_Mutation p.R1148L 0.07 tolerated(0.05) possibly_damaging(0.527) TCGA-DB-A64L-01 21 39671497 39671497 C - KCNJ15 Frame_Shift_Del p.C107Afs*3 0.09 TCGA-DB-A64L-01 2 108604713 108604713 C T SLC5A7 Silent p.S34S 0.28 TCGA-DB-A64L-01 2 169764688 169764688 T C G6PC2 3'Flank 0.37 TCGA-DB-A64L-01 2 174777827 174777827 T C SP3 Missense_Mutation p.E667G 0.20 deleterious(0) probably_damaging(0.992) TCGA-DB-A64L-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A64L-01 2 68873234 68873234 G A PROKR1 Missense_Mutation p.R94H 0.08 deleterious(0.03) probably_damaging(0.991) TCGA-DB-A64L-01 2 96781415 96781415 C T ADRA2B Silent p.P158P 0.16 TCGA-DB-A64L-01 3 112709901 112709901 G A GTPBP8 Missense_Mutation p.V19M 0.51 tolerated_low_confidence(0.09) benign(0.005) TCGA-DB-A64L-01 3 120417392 120417392 T A RABL3 Missense_Mutation p.N138Y 0.32 tolerated(0.17) possibly_damaging(0.827) TCGA-DB-A64L-01 3 124385314 124385314 G A KALRN Missense_Mutation p.G213R 0.07 deleterious(0) probably_damaging(0.998) TCGA-DB-A64L-01 3 171455769 171455769 T A PLD1 Missense_Mutation p.I25L 0.26 tolerated_low_confidence(0.08) probably_damaging(0.982) TCGA-DB-A64L-01 3 32932670 32932670 C T TRIM71 Silent p.G658G 0.29 TCGA-DB-A64L-01 4 151186806 151186806 T C LRBA 3'UTR 0.15 TCGA-DB-A64L-01 4 66361141 66361141 C A EPHA5 Missense_Mutation p.R344M 0.10 deleterious(0) possibly_damaging(0.72) TCGA-DB-A64L-01 5 140710720 140710720 G T PCDHGA1 Missense_Mutation p.G157W 0.14 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-DB-A64L-01 5 154395932 154395932 A T KIF4B Missense_Mutation p.Q838L 0.06 deleterious(0) probably_damaging(0.999) TCGA-DB-A64L-01 5 38923283 38923283 C T OSMR Silent p.F599F 0.35 TCGA-DB-A64L-01 6 10529180 10529180 G A GCNT2 Silent p.A12A 0.11 TCGA-DB-A64L-01 6 29692052 29692052 C G HLA-F Missense_Mutation p.S146C 0.04 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-DB-A64L-01 6 54173456 54173456 T C TINAG Silent p.T36T 0.11 TCGA-DB-A64L-01 7 100678887 100678887 C T MUC17 Missense_Mutation p.P1397L 0.09 unknown(0) TCGA-DB-A64L-01 7 27224590 27224590 G A HOXA11 Silent p.R58R 0.13 TCGA-DB-A64L-01 8 73480218 73480218 C T KCNB2 Silent p.N83N 0.32 TCGA-DB-A64L-01 9 104160861 104160861 G C MRPL50 Missense_Mutation p.S5C 0.12 tolerated_low_confidence(0.19) benign(0.001) TCGA-DB-A64L-01 9 133470894 133470894 C A FUBP3 Missense_Mutation p.P37T 0.08 tolerated(0.5) benign(0.04) TCGA-DB-A64L-01 9 139404348 139404348 C A NOTCH1 Missense_Mutation p.G936C 0.42 deleterious(0) probably_damaging(1) TCGA-DB-A64L-01 9 32631823 32631823 C T TAF1L Missense_Mutation p.R1252Q 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-DB-A64L-01 9 3898784 3898784 C T GLIS3 Missense_Mutation p.V679M 0.13 tolerated(0.11) probably_damaging(0.992) TCGA-DB-A64L-01 9 75441910 75441910 T C TMC1 Missense_Mutation p.V710A 0.13 tolerated(0.11) benign(0.068) TCGA-DB-A64L-01 X 106224616 106224616 C A MORC4 Missense_Mutation p.G256C 0.09 deleterious(0.01) possibly_damaging(0.686) TCGA-DB-A64L-01 X 13795537 13795537 A G GPM6B Silent p.I235I 0.07 TCGA-DB-A64L-01 X 152226308 152226308 G T PNMA3 Missense_Mutation p.S299I 0.13 deleterious(0.01) benign(0.187) TCGA-DB-A64L-01 X 17065569 17065569 C T REPS2 Nonsense_Mutation p.R291* 0.34 TCGA-DB-A64L-01 X 17394316 17394316 G A NHS Missense_Mutation p.A146T 0.43 deleterious(0) probably_damaging(0.992) TCGA-DB-A64L-01 X 34150160 34150160 G A FAM47A Missense_Mutation p.P79L 0.30 tolerated(0.06) probably_damaging(0.991) TCGA-DB-A64L-01 X 41075260 41075260 G A USP9X Missense_Mutation p.D1814N 0.14 deleterious(0) probably_damaging(0.997) TCGA-DB-A64L-01 X 49957836 49957836 G T AKAP4 Missense_Mutation p.Q510K 0.04 tolerated(0.36) benign(0.156) TCGA-DB-A64L-01 X 9900279 9900279 G C SHROOM2 Missense_Mutation p.A986P 0.04 tolerated(0.24) benign(0.029) TCGA-DB-A64O-01 10 103827403 103827403 G T HPS6 Missense_Mutation p.E724D 0.39 tolerated(0.42) benign(0.006) TCGA-DB-A64O-01 11 100863216 100863216 C - TMEM133 Frame_Shift_Del p.K60Rfs*4 0.14 TCGA-DB-A64O-01 11 1080349 1080349 G A MUC2 Missense_Mutation p.G357R 0.13 probably_damaging(0.997) TCGA-DB-A64O-01 11 94554782 94554782 A G AMOTL1 Missense_Mutation p.H403R 0.25 tolerated(0.3) benign(0.012) TCGA-DB-A64O-01 15 25304759 25304759 G A SNORD116-3 3'Flank 0.27 TCGA-DB-A64O-01 15 93568015 93568015 T G CHD2 3'UTR 0.43 TCGA-DB-A64O-01 17 1028592 1028592 G C ABR Missense_Mutation p.P58A 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DB-A64O-01 17 1028596 1028596 C A ABR Missense_Mutation p.M56I 0.24 tolerated_low_confidence(0.33) benign(0.014) TCGA-DB-A64O-01 17 1028598 1028598 T A ABR Missense_Mutation p.M56L 0.23 tolerated_low_confidence(1) benign(0) TCGA-DB-A64O-01 17 10348604 10348604 C T MYH4 Missense_Mutation p.V1749I 0.33 tolerated(0.8) benign(0.004) TCGA-DB-A64O-01 17 10436665 10436665 C T MYH2 Missense_Mutation p.R793Q 0.24 tolerated(0.13) benign(0.439) TCGA-DB-A64O-01 17 29552216 29552216 T A NF1 Nonsense_Mutation p.L650* 0.23 TCGA-DB-A64O-01 17 29562657 29562660 TGTT - NF1 Frame_Shift_Del p.F1247Ifs*18 0.27 TCGA-DB-A64O-01 17 38854404 38854404 A G KRT24 3'UTR 0.25 TCGA-DB-A64O-01 19 55856111 55856111 G A AC020922.1 Missense_Mutation p.R6H 0.16 unknown(0) TCGA-DB-A64O-01 1 247587695 247587695 C T NLRP3 Missense_Mutation p.P317L 0.25 tolerated(0.06) benign(0.028) TCGA-DB-A64O-01 1 72748064 72748065 CA - NEGR1 Frame_Shift_Del p.V38Gfs*21 0.19 TCGA-DB-A64O-01 20 62871819 62871819 A G MYT1 3'UTR 0.05 TCGA-DB-A64O-01 2 170668809 170668809 G A METTL5 Intron 0.18 TCGA-DB-A64O-01 2 32724735 32724735 A T BIRC6 Missense_Mutation p.T2864S 0.05 benign(0.123) TCGA-DB-A64O-01 3 10085520 10085520 A G FANCD2 Missense_Mutation p.E369G 0.29 deleterious(0) probably_damaging(0.927) TCGA-DB-A64O-01 3 15563251 15563251 T C COLQ 5'UTR 0.33 TCGA-DB-A64O-01 3 194062520 194062520 G C CPN2 Silent p.V304V 0.19 TCGA-DB-A64O-01 4 6303914 6303914 G A WFS1 Missense_Mutation p.V798I 0.11 tolerated(0.25) benign(0.003) TCGA-DB-A64O-01 5 160721230 160721230 C T GABRB2 Missense_Mutation p.R466H 0.22 tolerated(0.21) benign(0.009) TCGA-DB-A64O-01 6 35474051 35474051 C T TULP1 Silent p.A276A 0.38 TCGA-DB-A64O-01 6 64422286 64422286 A G PHF3 Missense_Mutation p.Q1601R 0.32 deleterious(0.03) benign(0.075) TCGA-DB-A64O-01 7 94293706 94293706 C T PEG10 Missense_Mutation p.R280C 0.10 tolerated(0.07) probably_damaging(0.977) TCGA-DB-A64O-01 X 46510652 46510652 C T SLC9A7 Missense_Mutation p.E414K 0.45 deleterious(0) possibly_damaging(0.705) TCGA-DB-A64P-01 11 61295549 61295549 C T SYT7 Missense_Mutation p.V229M 0.17 deleterious(0) probably_damaging(0.969) TCGA-DB-A64P-01 12 1023182 1023182 A T RAD52 Nonsense_Mutation p.L358* 0.14 TCGA-DB-A64P-01 12 125900205 125900205 G A TMEM132B Missense_Mutation p.R358H 0.17 tolerated(0.18) benign(0.001) TCGA-DB-A64P-01 13 52742281 52742281 A C MRPS31P5 RNA 0.20 TCGA-DB-A64P-01 16 29113369 29113369 G C RRN3P2 RNA 0.15 TCGA-DB-A64P-01 16 31374553 31374553 C T ITGAX Missense_Mutation p.A523V 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-DB-A64P-01 16 3526198 3526198 C T NAA60 Intron 0.50 TCGA-DB-A64P-01 17 39914694 39914694 C T JUP Missense_Mutation p.R577H 0.36 deleterious(0) probably_damaging(0.996) TCGA-DB-A64P-01 17 44630803 44630812 AAGGATTCTC - LRRC37A2 Frame_Shift_Del 0.22 TCGA-DB-A64P-01 19 42791719 42791719 G A CIC Missense_Mutation p.R202Q 0.29 probably_damaging(0.999) TCGA-DB-A64P-01 19 9082770 9082770 A G MUC16 Silent p.T3015T 0.21 TCGA-DB-A64P-01 19 9526349 9526349 G A ZNF266 Missense_Mutation p.T62I 0.12 tolerated(0.23) benign(0.085) TCGA-DB-A64P-01 1 200017321 200017321 G A NR5A2 Missense_Mutation p.R162H 0.11 deleterious(0) probably_damaging(0.997) TCGA-DB-A64P-01 1 202719900 202719900 G A KDM5B Nonsense_Mutation p.R570* 0.49 TCGA-DB-A64P-01 1 248685210 248685210 A T OR2G6 Missense_Mutation p.K88I 0.30 deleterious(0.02) benign(0.025) TCGA-DB-A64P-01 21 10941933 10941933 T C TPTE Missense_Mutation p.Q257R 0.19 tolerated(0.07) benign(0.022) TCGA-DB-A64P-01 2 131797917 131797917 C A ARHGEF4 Silent p.I336I 0.32 TCGA-DB-A64P-01 2 152497171 152497171 T C NEB Missense_Mutation p.K2795E 0.46 probably_damaging(0.999) TCGA-DB-A64P-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A64P-01 2 48809142 48809142 C A STON1-GTF2A1L Missense_Mutation p.T457N 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-DB-A64P-01 2 68607922 68607922 G C PLEK Missense_Mutation p.R89T 0.05 deleterious(0) probably_damaging(1) TCGA-DB-A64P-01 2 87201297 87201297 C T RGPD1 Nonsense_Mutation p.Q451* 0.15 TCGA-DB-A64P-01 3 48420003 48420003 G A FBXW12 Missense_Mutation p.G201D 0.12 tolerated(0.07) probably_damaging(0.959) TCGA-DB-A64P-01 4 123166209 123166209 C T KIAA1109 Nonsense_Mutation p.R1651* 0.25 TCGA-DB-A64P-01 4 78528958 78528958 C T CXCL13 Missense_Mutation p.R56C 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-DB-A64P-01 5 137424684 137424685 TT - WNT8A Frame_Shift_Del p.F146Cfs*54 0.11 TCGA-DB-A64P-01 5 140201485 140201485 C A PCDHA5 Missense_Mutation p.T42N 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.621) TCGA-DB-A64P-01 5 150946296 150946296 G A FAT2 Missense_Mutation p.P733S 0.41 benign(0.006) TCGA-DB-A64P-01 7 130418098 130418098 A C KLF14 Missense_Mutation p.F255V 0.30 deleterious(0) probably_damaging(0.996) TCGA-DB-A64P-01 7 89790617 89790617 T A STEAP1 Missense_Mutation p.W195R 0.12 tolerated(0.21) probably_damaging(0.966) TCGA-DB-A64P-01 X 152225327 152225327 C G PNMA3 5'UTR 0.84 TCGA-DB-A64P-01 X 2853194 2853194 C A ARSE Silent p.V483V 0.13 TCGA-DB-A64Q-01 11 12901386 12901386 G A TEAD1 Silent p.P154P 0.38 TCGA-DB-A64Q-01 14 100367314 100367314 C G EML1 Missense_Mutation p.L335V 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-DB-A64Q-01 14 74825020 74825020 C T VRTN Missense_Mutation p.R512C 0.45 deleterious(0) probably_damaging(0.998) TCGA-DB-A64Q-01 17 72588190 72588190 A T C17orf77 Missense_Mutation p.D2V 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.904) TCGA-DB-A64Q-01 17 73570548 73570548 A G LLGL2 Missense_Mutation p.I990V 0.36 tolerated_low_confidence(0.12) benign(0.02) TCGA-DB-A64Q-01 19 42799051 42799051 G A CIC Missense_Mutation p.R1512H 0.69 probably_damaging(0.964) TCGA-DB-A64Q-01 19 746735 746735 C T PALM Missense_Mutation p.A362V 0.56 tolerated(0.52) benign(0.013) TCGA-DB-A64Q-01 1 167956741 167956741 T C DCAF6 Silent p.T149T 0.15 TCGA-DB-A64Q-01 1 78429937 78429937 A C FUBP1 Splice_Site p.X314_splice 0.57 TCGA-DB-A64Q-01 21 34053835 34053835 C T SYNJ1 Missense_Mutation p.G481R 0.04 deleterious(0) probably_damaging(1) TCGA-DB-A64Q-01 21 44195444 44195444 C T PDE9A 3'UTR 0.05 TCGA-DB-A64Q-01 22 23248710 23248710 C T IGLC3 Missense_Mutation p.A67V 0.39 benign(0.006) TCGA-DB-A64Q-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A64Q-01 2 8872066 8872066 T C KIDINS220 Missense_Mutation p.D1367G 0.40 deleterious_low_confidence(0) possibly_damaging(0.474) TCGA-DB-A64Q-01 3 121186388 121186388 T A POLQ Silent p.R2315R 0.42 TCGA-DB-A64Q-01 3 142136035 142136035 C T XRN1 Silent p.Q461Q 0.35 TCGA-DB-A64Q-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-DB-A64Q-01 4 128739562 128739562 G A HSPA4L Missense_Mutation p.G554E 0.40 tolerated(0.88) benign(0.015) TCGA-DB-A64Q-01 6 132198210 132198210 C T ENPP1 Missense_Mutation p.T601M 0.52 tolerated(0.25) benign(0.075) TCGA-DB-A64Q-01 6 41165879 41165879 G A TREML2 Missense_Mutation p.P115L 0.12 deleterious(0) probably_damaging(1) TCGA-DB-A64Q-01 6 41738833 41738833 G A FRS3 Nonsense_Mutation p.Q335* 0.04 TCGA-DB-A64Q-01 9 138516117 138516117 C T GLT6D1 Silent p.P219P 0.36 TCGA-DB-A64Q-01 9 20414126 20414126 T C MLLT3 Missense_Mutation p.K240E 0.41 deleterious(0.03) probably_damaging(0.971) TCGA-DB-A64Q-01 9 34521712 34521712 A T ENHO 5'UTR 0.57 TCGA-DB-A64Q-01 X 54777673 54777673 A G ITIH6 Missense_Mutation p.S1165P 0.44 tolerated(0.13) probably_damaging(0.998) TCGA-DB-A64Q-01 X 71351107 71351107 T - RGAG4 Frame_Shift_Del p.E95Gfs*10 0.32 TCGA-DB-A64R-01 15 78401696 78401696 G A CIB2 Missense_Mutation p.A76V 0.16 deleterious(0.01) benign(0.079) TCGA-DB-A64R-01 19 42799059 42799059 C T CIC Missense_Mutation p.R1515C 0.85 probably_damaging(0.973) TCGA-DB-A64R-01 1 236647200 236647200 G A EDARADD 3'Flank 0.49 TCGA-DB-A64R-01 2 15564503 15564503 G A NBAS Missense_Mutation p.T838M 0.49 deleterious(0) benign(0.284) TCGA-DB-A64R-01 2 176948214 176948214 C G EVX2 Missense_Mutation p.E97D 0.26 tolerated(0.22) possibly_damaging(0.53) TCGA-DB-A64R-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A64R-01 3 49723525 49723525 G A MST1 Missense_Mutation p.R373W 0.08 deleterious(0.01) possibly_damaging(0.84) TCGA-DB-A64R-01 5 43506078 43506078 T C C5orf34 Missense_Mutation p.Y235C 0.43 deleterious(0) probably_damaging(0.957) TCGA-DB-A64R-01 6 5771549 5771549 C T FARS2 Missense_Mutation p.R415C 0.44 deleterious(0) probably_damaging(0.997) TCGA-DB-A64R-01 8 105361447 105361447 G A DCSTAMP Missense_Mutation p.V223I 0.04 tolerated(0.37) benign(0.012) TCGA-DB-A64R-01 8 113364708 113364708 A G CSMD3 Silent p.I2064I 0.30 TCGA-DB-A64R-01 8 87229764 87229764 T G SLC7A13 Missense_Mutation p.I372L 0.43 tolerated(0.82) benign(0.002) TCGA-DB-A64R-01 9 138415819 138415819 G A LCN1 Missense_Mutation p.R129Q 0.47 tolerated(0.15) benign(0.024) TCGA-DB-A64R-01 9 6805637 6805637 T G KDM4C Nonsense_Mutation p.Y61* 0.47 TCGA-DB-A64R-01 X 153209006 153209006 G A RENBP Missense_Mutation p.R152W 0.52 deleterious(0.01) possibly_damaging(0.854) TCGA-DB-A64R-01 X 48763802 48763802 A T SLC35A2 Missense_Mutation p.V98D 0.36 tolerated(0.2) benign(0.091) TCGA-DB-A64S-01 12 130919389 130919389 C T RIMBP2 Missense_Mutation p.A698T 0.20 tolerated(0.19) benign(0.03) TCGA-DB-A64S-01 17 16831055 16831055 G T TBC1D27 RNA 0.10 TCGA-DB-A64S-01 17 72522000 72522000 G A CD300LB Missense_Mutation p.T123M 0.06 deleterious(0.04) benign(0.037) TCGA-DB-A64S-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.39 deleterious(0) probably_damaging(1) TCGA-DB-A64S-01 1 169845150 169845150 G C SCYL3 Missense_Mutation p.T145S 0.05 tolerated(0.1) possibly_damaging(0.908) TCGA-DB-A64S-01 1 40309802 40309802 C A TRIT1 Missense_Mutation p.R402L 0.06 deleterious(0) possibly_damaging(0.908) TCGA-DB-A64S-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-DB-A64S-01 4 101331483 101331483 T C EMCN Missense_Mutation p.N261D 0.31 deleterious(0) probably_damaging(0.973) TCGA-DB-A64S-01 5 45262043 45262043 G A HCN1 Nonsense_Mutation p.R885* 0.39 TCGA-DB-A64S-01 6 56483617 56483617 G C DST Intron 0.33 TCGA-DB-A64S-01 7 104730554 104730573 AGACCAGACGGAAAAAAGGA - KMT2E Frame_Shift_Del p.T487Kfs*21 0.22 TCGA-DB-A64S-01 9 35748731 35748731 C A GBA2 5'UTR 0.04 TCGA-DB-A64S-01 X 34148780 34148780 C T FAM47A Missense_Mutation p.R539Q 0.78 tolerated(0.37) benign(0.417) TCGA-DB-A64S-01 X 76888813 76888813 C T ATRX Nonsense_Mutation p.W1672* 0.50 TCGA-DB-A64S-01 X 76939882 76939890 TGTTCTAAA - ATRX In_Frame_Del p.N286_Q289delinsK 0.20 TCGA-DB-A64U-01 11 113608372 113608372 C A ZW10 Silent p.V646V 0.68 TCGA-DB-A64U-01 11 33628229 33628229 A G KIAA1549L Missense_Mutation p.N1344S 0.30 tolerated(0.85) benign(0.008) TCGA-DB-A64U-01 12 20786709 20786709 A G PDE3A Missense_Mutation p.T615A 0.26 tolerated(0.47) benign(0.002) TCGA-DB-A64U-01 12 3788091 3788091 C T EFCAB4B Missense_Mutation p.V172M 0.05 deleterious(0.05) possibly_damaging(0.79) TCGA-DB-A64U-01 17 75190803 75190803 A G SEC14L1 Silent p.E173E 0.13 TCGA-DB-A64U-01 19 42799051 42799051 G A CIC Missense_Mutation p.R1512H 0.47 probably_damaging(0.964) TCGA-DB-A64U-01 19 4310577 4310577 A G FSD1 Silent p.A158A 0.32 TCGA-DB-A64U-01 20 60831200 60831200 A C OSBPL2 5'UTR 0.11 TCGA-DB-A64U-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A64U-01 2 27305238 27305238 G A EMILIN1 Missense_Mutation p.G267S 0.29 benign(0.007) TCGA-DB-A64U-01 2 48035296 48035297 AG - FBXO11 Frame_Shift_Del p.S915Cfs*7 0.08 TCGA-DB-A64U-01 4 663881 663881 C A PDE6B Silent p.T850T 0.25 TCGA-DB-A64U-01 6 158537270 158537270 C - SERAC1 Frame_Shift_Del p.R483Kfs*35 0.35 TCGA-DB-A64U-01 6 31848860 31848860 C T EHMT2 Silent p.G1069G 0.25 TCGA-DB-A64U-01 6 86237978 86237978 A G SNX14 Splice_Site p.X665_splice 0.09 TCGA-DB-A64U-01 7 149530949 149530949 C T ZNF862 5'Flank 0.38 TCGA-DB-A64U-01 9 103339004 103339004 C T TMEFF1 3'UTR 0.20 TCGA-DB-A64U-01 X 16608918 16608918 A T CTPS2 Nonstop_Mutation p.*587Rext*13 0.29 TCGA-DB-A64V-01 10 71175890 71175890 T A TACR2 Missense_Mutation p.M64L 0.07 deleterious(0) probably_damaging(0.927) TCGA-DB-A64V-01 10 71332578 71332578 C G NEUROG3 Missense_Mutation p.E74D 0.18 tolerated(0.14) benign(0.02) TCGA-DB-A64V-01 11 1024966 1024966 G A MUC6 Missense_Mutation p.P1035S 0.08 unknown(0) TCGA-DB-A64V-01 11 17452293 17452293 C T ABCC8 Intron 0.07 TCGA-DB-A64V-01 12 108938934 108938934 G A SART3 Missense_Mutation p.A237V 0.22 tolerated(0.17) possibly_damaging(0.604) TCGA-DB-A64V-01 12 22012589 22012589 C A ABCC9 Silent p.L812L 0.11 TCGA-DB-A64V-01 14 74988686 74988686 C T LTBP2 Missense_Mutation p.V906M 0.08 tolerated(0.16) benign(0.259) TCGA-DB-A64V-01 15 35086923 35086923 G A ACTC1 Silent p.P29P 0.05 TCGA-DB-A64V-01 15 79092723 79092723 G A ADAMTS7 Silent p.R89R 0.11 TCGA-DB-A64V-01 16 50707432 50707432 G A SNX20 Missense_Mutation p.A279V 0.07 tolerated(0.25) benign(0.002) TCGA-DB-A64V-01 17 37026337 37026337 C T LASP1 5'UTR 0.27 TCGA-DB-A64V-01 17 42882004 42882004 G A GJC1 Silent p.V394V 0.11 TCGA-DB-A64V-01 18 43700024 43700024 A G HAUS1 Silent p.Q158Q 0.29 TCGA-DB-A64V-01 19 13248162 13248162 C G NACC1 Missense_Mutation p.R400G 0.08 deleterious(0) possibly_damaging(0.801) TCGA-DB-A64V-01 19 42791802 42791802 G A CIC Missense_Mutation p.V230I 0.13 probably_damaging(0.996) TCGA-DB-A64V-01 1 158548933 158548933 C T OR10X1 Missense_Mutation p.A253T 0.13 tolerated(0.11) probably_damaging(0.998) TCGA-DB-A64V-01 1 78430553 78430553 A G FUBP1 Splice_Site p.X245_splice 0.10 TCGA-DB-A64V-01 20 50312662 50312662 T C ATP9A Missense_Mutation p.M173V 0.12 tolerated(0.54) benign(0.135) TCGA-DB-A64V-01 21 30342876 30342876 A C LTN1 Silent p.A437A 0.09 TCGA-DB-A64V-01 21 43833168 43833168 G A UBASH3A Silent p.A130A 0.10 TCGA-DB-A64V-01 22 41566476 41566476 T C EP300 Silent p.H1451H 0.12 TCGA-DB-A64V-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A64V-01 2 209169012 209169012 A G PIKFYVE Missense_Mutation p.I480V 0.25 tolerated(0.69) benign(0.094) TCGA-DB-A64V-01 2 86302160 86302160 G A POLR1A Missense_Mutation p.T535I 0.20 tolerated(0.48) benign(0.014) TCGA-DB-A64V-01 2 96956065 96956065 T C SNRNP200 Missense_Mutation p.K914R 0.12 tolerated(0.51) benign(0.008) TCGA-DB-A64V-01 3 114058203 114058203 C G ZBTB20 Missense_Mutation p.M625I 0.25 deleterious(0.02) possibly_damaging(0.708) TCGA-DB-A64V-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.10 tolerated(0.06) possibly_damaging(0.801) TCGA-DB-A64V-01 3 44496823 44496823 C T ZNF445 Silent p.L73L 0.05 TCGA-DB-A64V-01 3 58111408 58111408 C T FLNB Silent p.A1333A 0.05 TCGA-DB-A64V-01 4 120192691 120192691 A G USP53 Missense_Mutation p.D559G 0.12 deleterious(0.03) benign(0.049) TCGA-DB-A64V-01 5 140871058 140871058 G A PCDHGC5 Missense_Mutation p.V751M 0.10 deleterious(0.01) benign(0.178) TCGA-DB-A64V-01 5 169435568 169435568 T C DOCK2 Missense_Mutation p.F1047S 0.09 deleterious(0) probably_damaging(0.98) TCGA-DB-A64V-01 5 9630017 9630017 G A TAS2R1 Missense_Mutation p.P43L 0.23 deleterious(0) possibly_damaging(0.818) TCGA-DB-A64V-01 6 28228314 28228314 C T NKAPL Nonsense_Mutation p.R389* 0.08 TCGA-DB-A64V-01 6 31630099 31630102 CCTC - GPANK1 Frame_Shift_Del p.E338Rfs*10 0.13 TCGA-DB-A64V-01 6 70831800 70831800 A G COL19A1 Missense_Mutation p.Q436R 0.09 tolerated(0.45) possibly_damaging(0.828) TCGA-DB-A64V-01 7 7625428 7625428 G - MIOS Frame_Shift_Del p.G604Efs*26 0.12 TCGA-DB-A64V-01 7 92763622 92763638 TTTCCACTGAAGAGAGT - SAMD9L Frame_Shift_Del p.L550Pfs*7 0.40 TCGA-DB-A64V-01 8 87656896 87656896 A G CNGB3 Missense_Mutation p.F337L 0.30 deleterious(0) probably_damaging(0.925) TCGA-DB-A64V-01 9 95481529 95481529 C T BICD2 Silent p.Q466Q 0.34 TCGA-DB-A64V-01 X 18183208 18183208 G A BEND2 Missense_Mutation p.S774L 0.14 tolerated(0.32) benign(0.017) TCGA-DB-A64W-01 10 1405304 1405304 C T ADARB2 Silent p.A332A 0.56 TCGA-DB-A64W-01 10 72358832 72358832 A C PRF1 Silent p.L215L 0.42 TCGA-DB-A64W-01 10 95425134 95425134 G A PDE6C Missense_Mutation p.G846S 0.23 deleterious(0.05) benign(0.018) TCGA-DB-A64W-01 11 4388941 4388941 T C OR52B4 Silent p.R195R 0.36 TCGA-DB-A64W-01 12 113830761 113830761 A G SDS Silent p.N324N 0.43 TCGA-DB-A64W-01 12 40041653 40041653 C A C12orf40 Nonsense_Mutation p.C148* 0.13 TCGA-DB-A64W-01 13 73636332 73636332 G A KLF5 Missense_Mutation p.A199T 0.51 tolerated(0.72) benign(0) TCGA-DB-A64W-01 14 38723787 38723787 C T CLEC14A Missense_Mutation p.A481T 0.30 tolerated_low_confidence(0.72) benign(0.009) TCGA-DB-A64W-01 16 1557703 1557703 G A TELO2 Missense_Mutation p.R798Q 0.34 tolerated(0.31) benign(0.004) TCGA-DB-A64W-01 16 20387485 20387485 G A PDILT Nonsense_Mutation p.R150* 0.48 TCGA-DB-A64W-01 16 28847394 28847394 A G ATXN2L Silent p.A1012A 0.39 TCGA-DB-A64W-01 16 29888271 29888271 T G SEZ6L2 Missense_Mutation p.E637A 0.30 deleterious(0) probably_damaging(0.991) TCGA-DB-A64W-01 16 67859118 67859118 G A TSNAXIP1 Missense_Mutation p.A199T 0.42 deleterious(0.04) benign(0.087) TCGA-DB-A64W-01 17 66526499 66526499 G A PRKAR1A Missense_Mutation p.R352Q 0.43 deleterious(0) probably_damaging(0.987) TCGA-DB-A64W-01 17 7231068 7231068 G A NEURL4 Missense_Mutation p.R140C 0.41 tolerated(0.06) possibly_damaging(0.778) TCGA-DB-A64W-01 18 2732375 2732375 A G SMCHD1 Missense_Mutation p.H1054R 0.39 tolerated(0.06) benign(0.404) TCGA-DB-A64W-01 19 23541897 23541897 T A ZNF91 3'UTR 0.36 TCGA-DB-A64W-01 19 42791817 42791817 G T CIC Missense_Mutation p.G235C 0.65 probably_damaging(1) TCGA-DB-A64W-01 19 691902 691902 C T PRSS57 Missense_Mutation p.D113N 0.30 tolerated(0.58) benign(0.01) TCGA-DB-A64W-01 1 111738675 111738675 G C DENND2D Missense_Mutation p.L170V 0.82 deleterious(0) probably_damaging(0.976) TCGA-DB-A64W-01 1 152189221 152189221 C A HRNR Silent p.G1628G 0.31 TCGA-DB-A64W-01 1 158746704 158746704 C T OR6N2 Missense_Mutation p.C241Y 0.46 deleterious(0) probably_damaging(1) TCGA-DB-A64W-01 1 220142262 220142262 T A EPRS Silent p.G1475G 0.43 TCGA-DB-A64W-01 1 89448560 89448560 C T RBMXL1 Missense_Mutation p.R317H 0.73 tolerated(0.1) possibly_damaging(0.714) TCGA-DB-A64W-01 20 44641108 44641108 C T MMP9 Missense_Mutation p.A406V 0.41 deleterious(0) possibly_damaging(0.712) TCGA-DB-A64W-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A64W-01 3 101373567 101373567 G A ZBTB11 Nonsense_Mutation p.R764* 0.43 TCGA-DB-A64W-01 3 114058129 114058129 T C ZBTB20 Missense_Mutation p.N650S 0.35 deleterious(0.01) probably_damaging(0.973) TCGA-DB-A64W-01 3 151162901 151162901 T C IGSF10 Missense_Mutation p.K1623R 0.44 tolerated(0.14) benign(0.01) TCGA-DB-A64W-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.44 deleterious(0.04) probably_damaging(0.96) TCGA-DB-A64W-01 3 99513494 99513494 C T COL8A1 Missense_Mutation p.A250V 0.35 tolerated(0.48) unknown(0) TCGA-DB-A64W-01 5 132334445 132334446 - T ZCCHC10 Frame_Shift_Ins p.E115Rfs*4 0.18 TCGA-DB-A64W-01 5 140857769 140857769 C A PCDHGC3 Missense_Mutation p.L696I 0.43 tolerated(0.36) benign(0.248) TCGA-DB-A64W-01 5 89971261 89971261 A G GPR98 Missense_Mutation p.Q1771R 0.33 probably_damaging(0.932) TCGA-DB-A64W-01 6 159188410 159188410 G A EZR Silent p.G493G 0.33 TCGA-DB-A64W-01 6 30955980 30955980 G A MUC21 3'UTR 0.50 TCGA-DB-A64W-01 6 87964502 87964503 - A ZNF292 Frame_Shift_Ins p.R387Tfs*7 0.27 TCGA-DB-A64W-01 7 111512564 111512564 G A DOCK4 Missense_Mutation p.L601F 0.33 deleterious(0) probably_damaging(0.986) TCGA-DB-A64W-01 7 16918142 16918142 A G AGR3 Missense_Mutation p.L34P 0.38 deleterious(0.01) probably_damaging(1) TCGA-DB-A64W-01 7 26729921 26729921 C T SKAP2 Missense_Mutation p.S286N 0.33 tolerated(0.39) benign(0.001) TCGA-DB-A64W-01 7 43483866 43483866 G A HECW1 Silent p.Q365Q 0.31 TCGA-DB-A64W-01 8 6301937 6301937 C T MCPH1 Missense_Mutation p.H232Y 0.36 tolerated(0.13) probably_damaging(0.979) TCGA-DB-A64W-01 9 139571516 139571516 C T AGPAT2 Missense_Mutation p.G130D 0.38 deleterious(0) probably_damaging(0.999) TCGA-DB-A64W-01 9 96018613 96018613 C T WNK2 Silent p.P689P 0.37 TCGA-DB-A64W-01 X 103411395 103411395 G A FAM199X 5'UTR 0.33 TCGA-DB-A64W-01 X 109764561 109764561 G A TDGF1P3 RNA 0.46 TCGA-DB-A64W-01 X 132159579 132159579 T C USP26 Silent p.E890E 0.42 TCGA-DB-A64W-01 X 135405392 135405392 C T GPR112 Missense_Mutation p.R176C 0.47 deleterious(0) benign(0.417) TCGA-DB-A64W-01 X 148068962 148068962 A G AFF2 Missense_Mutation p.N1230S 0.43 tolerated(1) benign(0.076) TCGA-DB-A64W-01 X 1551213 1551213 G A ASMTL Missense_Mutation p.S153L 0.61 deleterious(0) probably_damaging(0.983) TCGA-DB-A64W-01 X 17744930 17744930 G T NHS Nonsense_Mutation p.E881* 0.46 TCGA-DB-A64W-01 X 30739086 30739086 G A GK Missense_Mutation p.R486Q 0.44 tolerated(0.16) benign(0.004) TCGA-DB-A64W-01 X 39930292 39930292 G - BCOR Frame_Shift_Del p.Q1058Rfs*55 0.30 TCGA-DB-A64W-01 X 54957391 54957391 A T TRO Missense_Mutation p.T1412S 0.44 tolerated_low_confidence(0.13) benign(0.391) TCGA-DB-A64W-01 X 75397598 75397598 A T PBDC1 Missense_Mutation p.N186I 0.41 tolerated_low_confidence(0.12) benign(0) TCGA-DB-A64X-01 10 61834572 61834572 C T ANK3 Missense_Mutation p.A2023T 0.10 benign(0.001) TCGA-DB-A64X-01 10 79785474 79785474 T - POLR3A Frame_Shift_Del p.N75Tfs*6 0.23 TCGA-DB-A64X-01 11 1271146 1271146 G A MUC5B Missense_Mutation p.A4346T 0.12 benign(0.008) TCGA-DB-A64X-01 11 557018 557018 C T C11orf35 Missense_Mutation p.V265M 0.69 deleterious(0) possibly_damaging(0.586) TCGA-DB-A64X-01 11 60698058 60698058 C T TMEM132A Missense_Mutation p.R315C 0.45 tolerated(0.08) possibly_damaging(0.857) TCGA-DB-A64X-01 11 64360337 64360337 C T SLC22A12 Silent p.C163C 0.05 TCGA-DB-A64X-01 11 65429217 65429217 T C RELA Silent p.G92G 0.14 TCGA-DB-A64X-01 11 67430801 67430801 A G ALDH3B2 Missense_Mutation p.L348P 0.41 deleterious(0) probably_damaging(0.985) TCGA-DB-A64X-01 12 113448463 113448463 C T OAS2 3'UTR 0.38 TCGA-DB-A64X-01 12 56330861 56330861 A G DGKA Missense_Mutation p.Y42C 0.05 deleterious(0.03) possibly_damaging(0.853) TCGA-DB-A64X-01 12 56348103 56348103 T C PMEL Silent p.V634V 0.32 TCGA-DB-A64X-01 12 7982600 7982600 C T SLC2A14 Missense_Mutation p.R115H 0.22 tolerated(0.09) benign(0.321) TCGA-DB-A64X-01 13 110804777 110804777 G A COL4A1 Missense_Mutation p.A1611V 0.30 unknown(0) TCGA-DB-A64X-01 14 24531941 24531941 G C LRRC16B Missense_Mutation p.R864S 0.49 tolerated(0.07) benign(0.022) TCGA-DB-A64X-01 14 45645432 45645432 T G FANCM Missense_Mutation p.L1159V 0.07 tolerated(0.47) benign(0.011) TCGA-DB-A64X-01 15 101971660 101971660 G A PCSK6 Silent p.G173G 0.17 TCGA-DB-A64X-01 15 28491947 28491947 G A HERC2 Missense_Mutation p.A1111V 0.43 possibly_damaging(0.541) TCGA-DB-A64X-01 15 95013576 95013576 C T MCTP2 Missense_Mutation p.T792M 0.46 deleterious(0) probably_damaging(0.989) TCGA-DB-A64X-01 16 57238805 57238805 G A RSPRY1 Missense_Mutation p.D79N 0.05 tolerated(0.35) benign(0.007) TCGA-DB-A64X-01 17 27778575 27778578 AACT - TAOK1 Frame_Shift_Del p.N5Efs*5 0.39 TCGA-DB-A64X-01 17 38954585 38954585 G A KRT28 Nonsense_Mutation p.R198* 0.11 TCGA-DB-A64X-01 17 39553720 39553720 G C KRT31 Silent p.P24P 0.41 TCGA-DB-A64X-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.40 deleterious(0) probably_damaging(0.998) TCGA-DB-A64X-01 17 7578191 7578191 A G TP53 Missense_Mutation p.Y220H 0.36 deleterious(0) probably_damaging(1) TCGA-DB-A64X-01 19 16689204 16689204 G A MED26 Missense_Mutation p.A30V 0.41 tolerated(0.6) benign(0.26) TCGA-DB-A64X-01 19 19745858 19745858 T G GMIP Silent p.I575I 0.43 TCGA-DB-A64X-01 19 46124545 46124545 C T EML2 Missense_Mutation p.G549R 0.35 deleterious(0.01) possibly_damaging(0.897) TCGA-DB-A64X-01 19 49656971 49656971 G A HRC Silent p.G508G 0.23 TCGA-DB-A64X-01 19 9089904 9089904 G A MUC16 Silent p.S637S 0.04 TCGA-DB-A64X-01 1 110551714 110551714 G A AHCYL1 Missense_Mutation p.R60Q 0.29 tolerated_low_confidence(0.11) benign(0.016) TCGA-DB-A64X-01 1 14107261 14107261 C G PRDM2 Missense_Mutation p.P991A 0.06 unknown(0) TCGA-DB-A64X-01 1 151040066 151040066 C G MLLT11 3'UTR 0.58 TCGA-DB-A64X-01 1 180240935 180240935 G A LHX4 Intron 0.05 TCGA-DB-A64X-01 1 21306934 21306934 T C EIF4G3 Missense_Mutation p.H80R 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-DB-A64X-01 1 220364615 220364615 C T RAB3GAP2 Missense_Mutation p.A428T 0.41 deleterious(0) probably_damaging(1) TCGA-DB-A64X-01 1 22159014 22159014 G A HSPG2 Silent p.G3727G 0.56 TCGA-DB-A64X-01 1 222801580 222801580 A G MIA3 Missense_Mutation p.K340E 0.44 tolerated(0.37) benign(0.009) TCGA-DB-A64X-01 1 22913059 22913059 G A EPHA8 Missense_Mutation p.A304T 0.11 tolerated(0.09) benign(0.009) TCGA-DB-A64X-01 1 248616334 248616334 T C OR2T2 Missense_Mutation p.V79A 0.04 deleterious(0.04) benign(0.354) TCGA-DB-A64X-01 1 27674019 27674019 A T SYTL1 Missense_Mutation p.D100V 0.06 deleterious(0) probably_damaging(0.988) TCGA-DB-A64X-01 1 38184352 38184352 C T EPHA10 Missense_Mutation p.V965M 0.09 deleterious(0.01) probably_damaging(0.961) TCGA-DB-A64X-01 1 42915623 42915623 C T ZMYND12 Missense_Mutation p.R73Q 0.06 deleterious(0) possibly_damaging(0.883) TCGA-DB-A64X-01 1 44132737 44132737 T C KDM4A Missense_Mutation p.I297T 0.06 deleterious(0) probably_damaging(0.995) TCGA-DB-A64X-01 1 47607808 47607808 G C CYP4A22 Missense_Mutation p.Q137H 0.39 deleterious(0.01) possibly_damaging(0.507) TCGA-DB-A64X-01 1 72163701 72163701 A G NEGR1 Silent p.V219V 0.52 TCGA-DB-A64X-01 20 3670829 3670829 G A SIGLEC1 Silent p.S1558S 0.40 TCGA-DB-A64X-01 21 15554174 15554174 T C LIPI Missense_Mutation p.D204G 0.12 deleterious(0) probably_damaging(1) TCGA-DB-A64X-01 21 31768649 31768649 G A KRTAP13-1 Missense_Mutation p.R82H 0.11 tolerated(0.35) benign(0.11) TCGA-DB-A64X-01 21 45978112 45978112 G A KRTAP10-3 Missense_Mutation p.R163C 0.10 deleterious(0.03) unknown(0) TCGA-DB-A64X-01 21 46117612 46117612 T C KRTAP10-12 Missense_Mutation p.C166R 0.41 deleterious(0) unknown(0) TCGA-DB-A64X-01 22 21988388 21988388 C T CCDC116 Silent p.S50S 0.07 TCGA-DB-A64X-01 22 22142614 22142614 T C MAPK1 Missense_Mutation p.Y263C 0.45 deleterious(0) possibly_damaging(0.751) TCGA-DB-A64X-01 2 179395863 179395863 A G TTN Missense_Mutation p.V35160A 0.40 TCGA-DB-A64X-01 2 179612750 179612750 C T TTN Intron 0.09 TCGA-DB-A64X-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A64X-01 2 62728212 62728212 C A TMEM17 3'UTR 0.58 TCGA-DB-A64X-01 3 10123119 10123119 G A FANCD2 Silent p.L1065L 0.04 TCGA-DB-A64X-01 3 121206245 121206245 G A POLQ Missense_Mutation p.R1845W 0.07 deleterious(0) possibly_damaging(0.696) TCGA-DB-A64X-01 3 133878164 133878164 G A RYK Silent p.Y544Y 0.19 TCGA-DB-A64X-01 3 52554824 52554824 G T STAB1 Missense_Mutation p.S1904I 0.05 tolerated(0.12) benign(0.14) TCGA-DB-A64X-01 3 52877766 52877766 C T TMEM110 Missense_Mutation p.V197I 0.08 deleterious(0) probably_damaging(0.928) TCGA-DB-A64X-01 4 187629810 187629810 G A FAT1 Missense_Mutation p.A391V 0.13 benign(0.014) TCGA-DB-A64X-01 4 189065196 189065196 G A TRIML1 Silent p.E255E 0.14 TCGA-DB-A64X-01 4 62800561 62800561 A G LPHN3 Missense_Mutation p.M638V 0.11 tolerated(1) benign(0.314) TCGA-DB-A64X-01 4 68930540 68930540 T C TMPRSS11F Missense_Mutation p.D293G 0.14 deleterious(0) probably_damaging(1) TCGA-DB-A64X-01 4 74863731 74863731 G A CXCL5 Silent p.D108D 0.44 TCGA-DB-A64X-01 4 77941664 77941664 A G SEPT11 Missense_Mutation p.E265G 0.10 deleterious(0) probably_damaging(0.981) TCGA-DB-A64X-01 4 90816198 90816198 T C MMRN1 Missense_Mutation p.S26P 0.22 tolerated_low_confidence(0.26) benign(0.004) TCGA-DB-A64X-01 4 90833188 90833188 A G MMRN1 Silent p.K279K 0.58 TCGA-DB-A64X-01 5 31297444 31297444 A T CDH6 Missense_Mutation p.Y191F 0.10 deleterious(0.03) probably_damaging(0.978) TCGA-DB-A64X-01 5 39383207 39383207 T G DAB2 Missense_Mutation p.N285T 0.06 tolerated(0.07) benign(0.14) TCGA-DB-A64X-01 5 80382767 80382767 G A RASGRF2 Missense_Mutation p.R462H 0.40 deleterious(0) probably_damaging(0.945) TCGA-DB-A64X-01 5 98129390 98129390 C G RGMB Missense_Mutation p.P457R 0.52 tolerated(0.21) benign(0.004) TCGA-DB-A64X-01 6 117245848 117245848 T C RFX6 Silent p.I524I 0.06 TCGA-DB-A64X-01 6 144171327 144171327 A C LTV1 Silent p.G123G 0.06 TCGA-DB-A64X-01 6 20846359 20846359 C T CDKAL1 Missense_Mutation p.A231V 0.07 tolerated(0.21) benign(0.032) TCGA-DB-A64X-01 6 32362767 32362767 G A BTNL2 Nonsense_Mutation p.Q372* 0.13 TCGA-DB-A64X-01 6 33626884 33626884 C T ITPR3 Silent p.A205A 0.46 TCGA-DB-A64X-01 6 63995539 63995539 G T LGSN Missense_Mutation p.L95I 0.40 tolerated(0.1) benign(0.1) TCGA-DB-A64X-01 7 105098346 105098346 T A PUS7 Missense_Mutation p.D626V 0.45 deleterious(0) possibly_damaging(0.555) TCGA-DB-A64X-01 7 11485796 11485796 T C THSD7A Missense_Mutation p.K986E 0.13 tolerated(0.07) benign(0.184) TCGA-DB-A64X-01 7 142609806 142609806 G A TRPV5 Missense_Mutation p.P544S 0.49 deleterious(0) probably_damaging(1) TCGA-DB-A64X-01 7 6045580 6045580 T G PMS2 Missense_Mutation p.S36R 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-DB-A64X-01 8 108263972 108263972 T C ANGPT1 3'UTR 0.33 TCGA-DB-A64X-01 8 113395856 113395856 C A CSMD3 Missense_Mutation p.D1991Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-DB-A64X-01 8 30694848 30694848 T G TEX15 Silent p.I2601I 0.41 TCGA-DB-A64X-01 8 72967828 72967828 G A TRPA1 Missense_Mutation p.R458C 0.46 deleterious(0) probably_damaging(0.999) TCGA-DB-A64X-01 9 137734208 137734208 G A COL5A1 3'UTR 0.18 TCGA-DB-A64X-01 9 141070184 141070184 G A TUBBP5 Intron 0.20 TCGA-DB-A64X-01 9 33311160 33311160 A G NFX1 Missense_Mutation p.E478G 0.27 tolerated(0.26) benign(0.368) TCGA-DB-A64X-01 X 100910839 100910839 T A ARMCX2 Missense_Mutation p.D579V 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-DB-A64X-01 X 101857471 101857471 T A ARMCX5 Silent p.I134I 0.07 TCGA-DB-A64X-01 X 106808260 106808260 C T FRMPD3 Silent p.G453G 0.24 TCGA-DB-A64X-01 X 119077534 119077534 C A NKAP Missense_Mutation p.R12M 0.06 tolerated_low_confidence(0.09) possibly_damaging(0.73) TCGA-DB-A64X-01 X 153130307 153130307 G T L1CAM Silent p.I1005I 0.26 TCGA-DB-A64X-01 X 37027824 37027824 G T FAM47C Silent p.V447V 0.42 TCGA-DB-A64X-01 X 48418191 48418191 C T TBC1D25 Missense_Mutation p.H299Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-DB-A64X-01 X 73812349 73812349 G A RLIM Silent p.H267H 0.06 TCGA-DB-A75K-01 10 85961671 85961671 G A CDHR1 Missense_Mutation p.A212T 0.30 deleterious(0) probably_damaging(0.987) TCGA-DB-A75K-01 11 33108639 33108639 C A CSTF3 Missense_Mutation p.A564S 0.40 tolerated(0.53) benign(0.016) TCGA-DB-A75K-01 11 64595069 64595069 A G CDC42BPG Silent p.N1360N 0.38 TCGA-DB-A75K-01 12 101720955 101720955 C T UTP20 Silent p.A1046A 0.33 TCGA-DB-A75K-01 12 107080822 107080823 - A RFX4 Frame_Shift_Ins p.F190Ifs*15 0.28 TCGA-DB-A75K-01 12 54676979 54676979 T G HNRNPA1 Missense_Mutation p.Y290D 0.30 tolerated(0.13) unknown(0) TCGA-DB-A75K-01 13 100992456 100992458 CAT - PCCA In_Frame_Del p.S531del 0.12 TCGA-DB-A75K-01 15 89837157 89837157 A C FANCI Missense_Mutation p.K795N 0.30 tolerated(0.15) benign(0.005) TCGA-DB-A75K-01 16 31309175 31309175 C T ITGAM Missense_Mutation p.T537M 0.33 tolerated(0.13) possibly_damaging(0.499) TCGA-DB-A75K-01 16 46762982 46762982 A C MYLK3 Missense_Mutation p.Y576D 0.26 deleterious(0) probably_damaging(1) TCGA-DB-A75K-01 16 67264350 67264350 A C FHOD1 Missense_Mutation p.I973S 0.32 deleterious(0) possibly_damaging(0.742) TCGA-DB-A75K-01 17 29684326 29684326 C T NF1 Nonsense_Mutation p.R2637* 0.31 TCGA-DB-A75K-01 19 42791479 42791480 - C CIC Frame_Shift_Ins p.I155Hfs*5 0.40 TCGA-DB-A75K-01 1 110884424 110884424 T G RBM15 Missense_Mutation p.F799L 0.09 deleterious(0) probably_damaging(0.945) TCGA-DB-A75K-01 1 147092733 147092733 A G BCL9 Silent p.P924P 0.32 TCGA-DB-A75K-01 1 169435072 169435072 C A SLC19A2 3'UTR 0.34 TCGA-DB-A75K-01 1 193111044 193111044 A G CDC73 Missense_Mutation p.K193E 0.54 deleterious(0.01) possibly_damaging(0.792) TCGA-DB-A75K-01 1 78429794 78429795 - TCGG FUBP1 Frame_Shift_Ins p.C332Pfs*20 0.71 TCGA-DB-A75K-01 20 34776386 34776386 A T EPB41L1 Missense_Mutation p.R331W 0.33 deleterious(0) probably_damaging(1) TCGA-DB-A75K-01 20 489208 489208 G A CSNK2A1 5'UTR 0.23 TCGA-DB-A75K-01 20 57415667 57415667 G A RP4-806M20.3 5'Flank 0.56 TCGA-DB-A75K-01 2 152311623 152311623 A C RIF1 Missense_Mutation p.K853N 0.46 tolerated(0.22) benign(0.009) TCGA-DB-A75K-01 2 17836522 17836522 C T VSNL1 Missense_Mutation p.T146M 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-DB-A75K-01 2 179433400 179433400 G A TTN Missense_Mutation p.P25820L 0.38 TCGA-DB-A75K-01 2 196756529 196756529 C A DNAH7 Splice_Site p.X1633_splice 0.13 TCGA-DB-A75K-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A75K-01 2 47222318 47222318 C A TTC7A Missense_Mutation p.L349I 0.09 deleterious(0.01) possibly_damaging(0.664) TCGA-DB-A75K-01 2 89339900 89339900 A G IGKV1-12 Missense_Mutation p.Y58H 0.47 deleterious(0.02) benign(0.406) TCGA-DB-A75K-01 3 46307553 46307553 G A CCR3 Missense_Mutation p.A323T 0.36 deleterious(0.01) probably_damaging(0.977) TCGA-DB-A75K-01 3 47451444 47451444 G A PTPN23 Missense_Mutation p.R719Q 0.40 unknown(0) TCGA-DB-A75K-01 4 174254742 174254742 A C HMGB2 Missense_Mutation p.V20G 0.07 deleterious(0.01) probably_damaging(0.964) TCGA-DB-A75K-01 4 3418783 3418783 C T RGS12 Silent p.L857L 0.49 TCGA-DB-A75K-01 4 38776169 38776169 G A TLR10 Missense_Mutation p.T348M 0.36 deleterious(0.03) benign(0.037) TCGA-DB-A75K-01 6 143818529 143818529 T G FUCA2 Silent p.T420T 0.45 TCGA-DB-A75K-01 7 2749409 2749409 C T AMZ1 Silent p.L303L 0.25 TCGA-DB-A75K-01 7 44579885 44579885 G A NPC1L1 Silent p.D37D 0.28 TCGA-DB-A75K-01 8 119941085 119941085 T A TNFRSF11B Nonsense_Mutation p.K162* 0.38 TCGA-DB-A75K-01 9 139413070 139413072 AGA - NOTCH1 In_Frame_Del p.F357del 0.25 TCGA-DB-A75K-01 9 90534158 90534159 - TCTTGTCTCCCAGCGTCA SPATA31C1 Intron 0.13 TCGA-DB-A75K-01 X 136649636 136649636 C T ZIC3 Silent p.S262S 0.48 TCGA-DB-A75K-01 X 142716809 142716809 C T SLITRK4 Missense_Mutation p.E706K 0.40 tolerated(0.41) benign(0.152) TCGA-DB-A75K-01 X 153631307 153631307 C T DNASE1L1 Silent p.T250T 0.47 TCGA-DB-A75K-01 X 2827921 2827921 G A ARSD Missense_Mutation p.T412M 0.35 deleterious(0) probably_damaging(0.998) TCGA-DB-A75K-01 X 2933251 2933251 G A ARSH Nonsense_Mutation p.W194* 0.32 TCGA-DB-A75K-01 X 31241162 31241162 A T DMD Splice_Site p.X3121_splice 0.40 TCGA-DB-A75K-01 X 37639320 37639320 C A CYBB 5'UTR 0.24 TCGA-DB-A75K-01 X 65247907 65247907 T C VSIG4 Missense_Mutation p.T248A 0.31 tolerated(0.52) benign(0.009) TCGA-DB-A75K-01 X 67751800 67751800 T A YIPF6 Missense_Mutation p.F224I 0.27 deleterious(0.01) probably_damaging(1) TCGA-DB-A75K-01 X 70607290 70607290 G A TAF1 Silent p.T822T 0.33 TCGA-DB-A75K-01 X 83126517 83126517 A G CYLC1 Missense_Mutation p.K39R 0.37 deleterious(0) possibly_damaging(0.533) TCGA-DB-A75L-01 11 102651240 102651240 T C MMP10 Missense_Mutation p.D28G 0.18 tolerated(0.15) benign(0.02) TCGA-DB-A75L-01 11 111613388 111613388 G A PPP2R1B Missense_Mutation p.A519V 0.30 tolerated(0.89) benign(0.001) TCGA-DB-A75L-01 11 124615509 124615509 G A NRGN Silent p.A42A 0.32 TCGA-DB-A75L-01 11 128781260 128781260 A G KCNJ5 Missense_Mutation p.D31G 0.12 deleterious(0.05) benign(0.003) TCGA-DB-A75L-01 12 21033840 21033840 A C SLCO1B3 Silent p.S461S 0.09 TCGA-DB-A75L-01 12 57976954 57976954 G T KIF5A Missense_Mutation p.A1031S 0.21 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-DB-A75L-01 12 83251282 83251282 C T TMTC2 Missense_Mutation p.L193F 0.43 deleterious(0.04) probably_damaging(0.968) TCGA-DB-A75L-01 14 20248553 20248553 A G OR4M1 Silent p.Q24Q 0.11 TCGA-DB-A75L-01 14 20826017 20826017 C T PARP2 3'UTR 0.45 TCGA-DB-A75L-01 14 64548243 64548243 A G SYNE2 Missense_Mutation p.N3810S 0.44 benign(0.005) TCGA-DB-A75L-01 15 64673229 64673229 C T KIAA0101 Missense_Mutation p.A19T 0.08 deleterious(0) benign(0.144) TCGA-DB-A75L-01 16 19516377 19516377 G C GDE1 Missense_Mutation p.T225S 0.15 deleterious(0) probably_damaging(0.923) TCGA-DB-A75L-01 17 1578461 1578461 G T PRPF8 Silent p.V1015V 0.10 TCGA-DB-A75L-01 17 26712246 26712246 G A SARM1 Missense_Mutation p.G494S 0.60 tolerated(0.09) possibly_damaging(0.481) TCGA-DB-A75L-01 17 33319550 33319550 G A LIG3 Missense_Mutation p.A432T 0.40 deleterious(0) probably_damaging(0.994) TCGA-DB-A75L-01 17 3336736 3336736 C T OR1E2 Missense_Mutation p.A134T 0.11 tolerated_low_confidence(0.56) unknown(0) TCGA-DB-A75L-01 17 41835920 41835920 G A SOST Missense_Mutation p.R64W 0.14 deleterious(0) probably_damaging(0.996) TCGA-DB-A75L-01 17 7577118 7577118 C A TP53 Missense_Mutation p.V274F 0.96 deleterious(0.03) benign(0.275) TCGA-DB-A75L-01 18 21494681 21494682 - TTAA LAMA3 Frame_Shift_Ins p.Y2503* 0.30 TCGA-DB-A75L-01 18 21758022 21758022 C A OSBPL1A Missense_Mutation p.S683I 0.08 deleterious(0) probably_damaging(0.997) TCGA-DB-A75L-01 18 8244057 8244057 A G PTPRM Missense_Mutation p.K768E 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-DB-A75L-01 19 15233798 15233798 C T ILVBL Missense_Mutation p.R170Q 0.09 tolerated(0.08) benign(0.033) TCGA-DB-A75L-01 19 38190049 38190049 T G ZNF607 Missense_Mutation p.Q328P 0.05 deleterious(0) possibly_damaging(0.883) TCGA-DB-A75L-01 19 52130861 52130861 C T SIGLEC5 Missense_Mutation p.G379D 0.70 deleterious(0.03) benign(0.009) TCGA-DB-A75L-01 19 9968435 9968435 G A OLFM2 Missense_Mutation p.R106W 0.44 deleterious(0.01) possibly_damaging(0.849) TCGA-DB-A75L-01 19 9968436 9968436 C A OLFM2 Silent p.A105A 0.41 TCGA-DB-A75L-01 1 155899562 155899562 T C KIAA0907 Missense_Mutation p.I109V 0.05 deleterious(0) probably_damaging(0.963) TCGA-DB-A75L-01 1 47603305 47603305 C T CYP4A22 Nonsense_Mutation p.Q50* 0.15 TCGA-DB-A75L-01 2 161135075 161135075 A G RBMS1 Missense_Mutation p.L349P 0.25 deleterious(0) probably_damaging(0.968) TCGA-DB-A75L-01 2 169985156 169985156 C A LRP2 3'UTR 0.37 TCGA-DB-A75L-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A75L-01 2 27799757 27799757 G A C2orf16 Silent p.E106E 0.53 TCGA-DB-A75L-01 2 44031782 44031782 A T DYNC2LI1 Silent p.G268G 0.11 TCGA-DB-A75L-01 2 54482297 54482297 C T TSPYL6 Missense_Mutation p.R331H 0.41 tolerated(1) benign(0.059) TCGA-DB-A75L-01 3 154032922 154032922 T C DHX36 Silent p.Q172Q 0.38 TCGA-DB-A75L-01 4 166935596 166935596 T C TLL1 Missense_Mutation p.F309S 0.16 deleterious(0) probably_damaging(0.951) TCGA-DB-A75L-01 4 66231755 66231755 T C EPHA5 Missense_Mutation p.T649A 0.11 tolerated(0.07) probably_damaging(0.952) TCGA-DB-A75L-01 5 148747904 148747904 C G PCYOX1L Missense_Mutation p.A391G 0.37 tolerated(0.17) probably_damaging(0.969) TCGA-DB-A75L-01 6 102074501 102074501 A T GRIK2 Missense_Mutation p.D177V 0.40 deleterious(0) probably_damaging(1) TCGA-DB-A75L-01 6 32037587 32037587 C T TNXB Missense_Mutation p.R1777H 0.20 probably_damaging(0.995) TCGA-DB-A75L-01 7 100364680 100364680 G A ZAN Missense_Mutation p.D1554N 0.04 unknown(0) TCGA-DB-A75L-01 9 139410000 139410001 - G NOTCH1 Frame_Shift_Ins p.R613Pfs*32 0.29 TCGA-DB-A75L-01 X 132436968 132436968 C G GPC4 Missense_Mutation p.R533P 0.45 tolerated(0.31) benign(0) TCGA-DB-A75L-01 X 148690457 148690457 A G TMEM185A Silent p.L94L 0.25 TCGA-DB-A75L-01 X 21875031 21875031 A G YY2 Silent p.K143K 0.06 TCGA-DB-A75L-01 X 31947768 31947768 T C DMD Missense_Mutation p.E2286G 0.37 possibly_damaging(0.607) TCGA-DB-A75L-01 X 70386886 70386886 A G NLGN3 Silent p.Q313Q 0.35 TCGA-DB-A75L-01 X 77369613 77369613 C A PGK1 Missense_Mutation p.H125N 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-DB-A75M-01 12 46246183 46246183 C A ARID2 Nonsense_Mutation p.S1426* 0.07 TCGA-DB-A75M-01 14 99865292 99865292 T C SETD3 Silent p.E503E 0.06 TCGA-DB-A75M-01 16 56906653 56906653 G A SLC12A3 Silent p.S350S 0.47 TCGA-DB-A75M-01 17 38911540 38911540 C T KRT25 5'UTR 0.24 TCGA-DB-A75M-01 17 47888911 47888911 G A KAT7 Missense_Mutation p.S276N 0.53 tolerated(0.86) benign(0.001) TCGA-DB-A75M-01 17 7577114 7577114 C A TP53 Missense_Mutation p.C275F 0.88 deleterious(0) probably_damaging(0.983) TCGA-DB-A75M-01 19 44223451 44223451 G A IRGC Silent p.S247S 0.38 TCGA-DB-A75M-01 1 16952974 16952974 C G CROCCP2 3'Flank 0.18 TCGA-DB-A75M-01 1 25228807 25228807 C A RUNX3 Missense_Mutation p.G366W 0.44 deleterious(0) probably_damaging(1) TCGA-DB-A75M-01 1 46736447 46736447 A G RAD54L Missense_Mutation p.I387V 0.05 tolerated(0.33) benign(0.007) TCGA-DB-A75M-01 20 33764557 33764557 T C PROCR Missense_Mutation p.F220L 0.47 tolerated(0.34) benign(0.022) TCGA-DB-A75M-01 21 43411755 43411755 T C ZBTB21 Missense_Mutation p.N817S 0.07 tolerated(0.15) benign(0.196) TCGA-DB-A75M-01 2 196723412 196723412 A G DNAH7 Missense_Mutation p.V2618A 0.06 tolerated(0.73) benign(0.013) TCGA-DB-A75M-01 2 198265653 198265653 T A SF3B1 Missense_Mutation p.D835V 0.35 deleterious(0.02) possibly_damaging(0.772) TCGA-DB-A75M-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-DB-A75M-01 3 142238509 142238509 A G ATR Splice_Site p.X1461_splice 0.15 TCGA-DB-A75M-01 4 119216997 119216997 C G PRSS12 Missense_Mutation p.V618L 0.38 tolerated(0.14) benign(0.041) TCGA-DB-A75M-01 4 125590192 125590192 T C ANKRD50 Missense_Mutation p.I1414V 0.35 tolerated_low_confidence(0.35) benign(0.004) TCGA-DB-A75M-01 4 128621196 128621196 A G INTU Missense_Mutation p.E494G 0.41 deleterious(0) probably_damaging(0.996) TCGA-DB-A75M-01 6 394869 394869 G T IRF4 Missense_Mutation p.D89Y 0.35 deleterious(0) probably_damaging(0.99) TCGA-DB-A75M-01 6 46982425 46982425 G C GPR110 Missense_Mutation p.L307V 0.37 deleterious(0.01) possibly_damaging(0.878) TCGA-DB-A75M-01 7 144098450 144098450 G T NOBOX Missense_Mutation p.P178H 0.47 deleterious(0) probably_damaging(0.931) TCGA-DB-A75M-01 7 15458208 15458208 A C AGMO Missense_Mutation p.L195R 0.25 deleterious(0) probably_damaging(0.999) TCGA-DB-A75M-01 8 38003533 38003533 C G STAR Missense_Mutation p.A200P 0.24 deleterious(0.02) possibly_damaging(0.882) TCGA-DB-A75M-01 8 57228684 57228684 C T SDR16C5 Missense_Mutation p.E75K 0.05 tolerated(0.07) benign(0.094) TCGA-DB-A75M-01 8 98943201 98943201 C T MATN2 Missense_Mutation p.R55W 0.17 deleterious(0.01) possibly_damaging(0.677) TCGA-DB-A75M-01 9 127781107 127781107 C T SCAI Missense_Mutation p.A301T 0.34 deleterious(0.05) possibly_damaging(0.786) TCGA-DB-A75M-01 X 102885053 102885053 A G TCEAL1 Missense_Mutation p.Q70R 0.77 tolerated_low_confidence(0.46) benign(0) TCGA-DB-A75M-01 X 76939652 76939652 T - ATRX Frame_Shift_Del p.M366* 0.46 TCGA-DB-A75M-01 X 77266953 77266953 C T ATP7A Missense_Mutation p.R652W 0.11 deleterious(0.03) benign(0.003) TCGA-DB-A75O-01 10 105331484 105331484 C T NEURL1 Missense_Mutation p.S185L 0.19 tolerated(0.32) possibly_damaging(0.716) TCGA-DB-A75O-01 11 56344882 56344882 C T OR5M10 Missense_Mutation p.A106T 0.18 tolerated(0.45) benign(0.022) TCGA-DB-A75O-01 11 61644404 61644404 C T FADS3 Missense_Mutation p.R306H 0.38 deleterious(0.04) probably_damaging(0.924) TCGA-DB-A75O-01 13 101797192 101797192 C T NALCN Missense_Mutation p.R632Q 0.32 deleterious(0.02) possibly_damaging(0.791) TCGA-DB-A75O-01 15 50886773 50886773 C T TRPM7 Missense_Mutation p.V1110I 0.42 tolerated(0.19) benign(0.241) TCGA-DB-A75O-01 15 57523450 57523451 - GCAA TCF12 Frame_Shift_Ins p.D229Afs*9 0.37 TCGA-DB-A75O-01 16 312148 312148 C T ITFG3 Silent p.S255S 0.33 TCGA-DB-A75O-01 17 7579323 7579324 - A TP53 Frame_Shift_Ins p.V122Cfs*27 0.45 TCGA-DB-A75O-01 1 52704261 52704261 A G ZFYVE9 Missense_Mutation p.E391G 0.15 tolerated_low_confidence(0.09) benign(0.001) TCGA-DB-A75O-01 1 55598323 55598323 C A USP24 Silent p.L1144L 0.07 TCGA-DB-A75O-01 21 40552362 40552362 G C PSMG1 Missense_Mutation p.A81G 0.25 tolerated(0.49) probably_damaging(0.961) TCGA-DB-A75O-01 2 179470238 179470238 A T TTN Missense_Mutation p.D17928E 0.12 TCGA-DB-A75O-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DB-A75O-01 2 80530285 80530285 G C LRRTM1 Missense_Mutation p.D220E 0.08 tolerated(0.15) benign(0.017) TCGA-DB-A75O-01 7 150815375 150815375 C A AGAP3 Missense_Mutation p.T262N 0.25 deleterious(0.02) probably_damaging(0.952) TCGA-DB-A75O-01 8 55541829 55541829 C T RP1 Missense_Mutation p.T1796M 0.37 deleterious(0.03) possibly_damaging(0.742) TCGA-DB-A75O-01 8 80950272 80950272 T A TPD52 3'UTR 0.12 TCGA-DB-A75O-01 8 81897059 81897059 C T PAG1 Silent p.G276G 0.04 TCGA-DB-A75O-01 X 76875970 76875970 T C ATRX Missense_Mutation p.H1722R 0.36 probably_damaging(0.999) TCGA-DB-A75P-01 1 44584587 44584587 G A KLF17 Missense_Mutation p.G3D 0.21 tolerated_low_confidence(0.35) benign(0.002) TCGA-DB-A75P-01 6 40399771 40399771 G A LRFN2 Missense_Mutation p.A361V 0.07 deleterious(0) probably_damaging(0.997) TCGA-DB-A75P-01 7 103141235 103141235 G A RELN Missense_Mutation p.P2875L 0.19 tolerated(0.2) benign(0.004) TCGA-DB-A75P-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.24 deleterious(0) probably_damaging(0.967) TCGA-DB-A75P-01 8 2796230 2796230 C T CSMD1 Silent p.G3524G 0.21 TCGA-DB-A75P-01 X 150912423 150912423 G A CNGA2 Missense_Mutation p.R483H 0.05 deleterious(0) probably_damaging(1) TCGA-DH-5140-01 11 66243277 66243277 C T PELI3 Missense_Mutation p.A350V 0.22 tolerated(0.8) benign(0.001) TCGA-DH-5140-01 11 77639508 77639508 A T INTS4 Silent p.V417V 0.65 TCGA-DH-5140-01 11 95712904 95712904 C G MAML2 Missense_Mutation p.Q893H 0.55 unknown(0) TCGA-DH-5140-01 12 333155 333155 C A SLC6A13 Intron 0.18 TCGA-DH-5140-01 12 42711595 42711595 G T ZCRB1 Missense_Mutation p.N73K 0.40 tolerated(0.27) benign(0.022) TCGA-DH-5140-01 12 7046127 7046127 C T ATN1 Missense_Mutation p.P566L 0.08 benign(0.157) TCGA-DH-5140-01 15 42172441 42172441 A G SPTBN5 Silent p.L910L 0.32 TCGA-DH-5140-01 15 85438304 85438304 G A SLC28A1 Silent p.R137R 0.14 TCGA-DH-5140-01 15 89398499 89398499 C T ACAN Missense_Mutation p.P895S 0.42 deleterious(0.03) possibly_damaging(0.685) TCGA-DH-5140-01 16 3640690 3640690 G A SLX4 Silent p.Y983Y 0.52 TCGA-DH-5140-01 16 48174762 48174762 G A ABCC12 Silent p.L165L 0.44 TCGA-DH-5140-01 16 56703734 56703734 C T MT1H 5'UTR 0.40 TCGA-DH-5140-01 17 29556166 29556166 T C NF1 Missense_Mutation p.C845R 0.89 deleterious(0) benign(0.109) TCGA-DH-5140-01 17 7574025 7574025 C - TP53 Frame_Shift_Del p.R335Vfs*10 0.23 TCGA-DH-5140-01 17 7574035 7574035 T G TP53 Splice_Site p.X332_splice 0.31 TCGA-DH-5140-01 17 7577572 7577572 T C TP53 Missense_Mutation p.M237V 0.37 deleterious(0) probably_damaging(0.995) TCGA-DH-5140-01 17 78032380 78032380 G A CCDC40 Missense_Mutation p.R416H 0.91 tolerated(0.55) benign(0.416) TCGA-DH-5140-01 19 15281250 15281250 C T NOTCH3 Missense_Mutation p.R1669H 0.42 tolerated(0.1) probably_damaging(0.999) TCGA-DH-5140-01 19 33350866 33350866 G T SLC7A9 Missense_Mutation p.L252M 0.21 deleterious(0) probably_damaging(0.972) TCGA-DH-5140-01 19 4511095 4511095 G A PLIN4 Silent p.G945G 0.28 TCGA-DH-5140-01 1 176132075 176132075 T C RFWD2 Missense_Mutation p.D231G 0.46 tolerated(0.09) benign(0.003) TCGA-DH-5140-01 1 204159803 204159803 C G KISS1 Missense_Mutation p.E76Q 0.15 deleterious(0.02) benign(0.162) TCGA-DH-5140-01 1 82456736 82456736 T C LPHN2 Silent p.N1373N 0.41 TCGA-DH-5140-01 21 15599378 15599378 G A RBM11 Missense_Mutation p.A204T 0.21 tolerated_low_confidence(0.29) benign(0.014) TCGA-DH-5140-01 2 111562956 111562956 C T ACOXL Missense_Mutation p.A246V 0.39 deleterious(0.02) possibly_damaging(0.715) TCGA-DH-5140-01 2 128938471 128938471 T - UGGT1 Frame_Shift_Del p.I1303Nfs*47 0.33 TCGA-DH-5140-01 2 160998543 160998543 G A ITGB6 Missense_Mutation p.L353F 0.04 deleterious(0) probably_damaging(0.996) TCGA-DH-5140-01 2 21228172 21228172 G A APOB Silent p.I3856I 0.47 TCGA-DH-5140-01 3 189612149 189612149 G - TP63 Frame_Shift_Del p.G635Vfs*69 0.34 TCGA-DH-5140-01 3 196094958 196094958 C T UBXN7 Missense_Mutation p.G259S 0.07 tolerated(0.86) benign(0.001) TCGA-DH-5140-01 3 47103668 47103705 TTTGTTCCCCGCTCATAGGCAGAAGAGGGTGGTGAGAG - SETD2 Frame_Shift_Del p.L2081Kfs*4 0.26 TCGA-DH-5140-01 3 49059582 49059582 C G NDUFAF3 Missense_Mutation p.A2G 0.35 tolerated_low_confidence(0.08) possibly_damaging(0.596) TCGA-DH-5140-01 6 26247163 26247163 C T HIST1H4G Missense_Mutation p.G15S 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.862) TCGA-DH-5140-01 6 32713607 32713607 C T HLA-DQA2 Missense_Mutation p.T124M 0.50 tolerated(0.14) benign(0.01) TCGA-DH-5140-01 7 130024455 130024455 G A CPA1 Missense_Mutation p.A259T 0.08 tolerated(0.07) benign(0.116) TCGA-DH-5140-01 7 87466058 87466058 G A SLC25A40 Silent p.S297S 0.29 TCGA-DH-5140-01 8 133837542 133837542 A C PHF20L1 Missense_Mutation p.E557A 0.07 tolerated(0.14) benign(0.015) TCGA-DH-5140-01 9 86955552 86955553 - T SLC28A3 5'UTR 0.38 TCGA-DH-5141-01 11 62289982 62289982 G A AHNAK Silent p.D3969D 0.07 TCGA-DH-5141-01 11 65790440 65790440 G A CATSPER1 Missense_Mutation p.R437W 0.38 tolerated(0.13) benign(0.15) TCGA-DH-5141-01 11 7064302 7064302 G A NLRP14 Missense_Mutation p.A349T 0.11 deleterious(0.01) possibly_damaging(0.743) TCGA-DH-5141-01 12 54914539 54914539 C T NCKAP1L Missense_Mutation p.R563C 0.32 deleterious(0) possibly_damaging(0.882) TCGA-DH-5141-01 12 71978453 71978453 C T LGR5 Missense_Mutation p.P888L 0.33 deleterious(0.01) benign(0.097) TCGA-DH-5141-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-DH-5141-01 16 89715806 89715806 C T CHMP1A Missense_Mutation p.V69I 0.31 tolerated(1) benign(0.025) TCGA-DH-5141-01 17 29855551 29855551 C T RAB11FIP4 Missense_Mutation p.A495V 0.05 deleterious(0.01) possibly_damaging(0.604) TCGA-DH-5141-01 17 39642800 39642800 G A KRT36 Missense_Mutation p.T411M 0.13 deleterious(0.03) benign(0.023) TCGA-DH-5141-01 18 59174700 59174700 G A CDH20 Silent p.E308E 0.09 TCGA-DH-5141-01 18 61323264 61323264 A C SERPINB3 Missense_Mutation p.M267R 0.18 deleterious(0.01) benign(0.003) TCGA-DH-5141-01 19 42353197 42353197 G A DMRTC2 Splice_Site p.X210_splice 0.03 TCGA-DH-5141-01 19 42797299 42797300 TC - CIC Frame_Shift_Del p.S1221* 0.53 TCGA-DH-5141-01 1 1560729 1560729 A G MIB2 Missense_Mutation p.K377R 0.22 tolerated(0.18) possibly_damaging(0.878) TCGA-DH-5141-01 1 233344354 233344354 C T PCNXL2 Missense_Mutation p.A925T 0.13 tolerated(0.07) benign(0.147) TCGA-DH-5141-01 1 89728016 89728016 C T GBP5 Missense_Mutation p.E512K 0.45 tolerated(0.1) benign(0.193) TCGA-DH-5141-01 20 17434533 17434533 C T PCSK2 Silent p.D344D 0.14 TCGA-DH-5141-01 22 21115635 21115635 C T PI4KA Missense_Mutation p.M916I 0.08 tolerated(1) benign(0.002) TCGA-DH-5141-01 22 24717648 24717648 C T SPECC1L Missense_Mutation p.H234Y 0.32 tolerated(0.96) benign(0.125) TCGA-DH-5141-01 2 152293371 152293371 C A RIF1 Missense_Mutation p.T409N 0.09 tolerated(0.06) benign(0.167) TCGA-DH-5141-01 2 29294007 29294007 G A C2orf71 Missense_Mutation p.P1041S 0.31 deleterious(0.02) benign(0.241) TCGA-DH-5141-01 3 48461210 48461210 G C PLXNB1 Missense_Mutation p.P829A 0.30 tolerated(0.05) probably_damaging(0.997) TCGA-DH-5141-01 5 132158586 132158586 T C SHROOM1 Missense_Mutation p.R821G 0.05 tolerated(0.19) benign(0.016) TCGA-DH-5141-01 5 148206922 148206922 C T ADRB2 Silent p.A176A 0.07 TCGA-DH-5141-01 5 153855316 153855316 G A HAND1 3'UTR 0.23 TCGA-DH-5141-01 5 37008732 37008732 C G NIPBL Nonsense_Mutation p.S1443* 0.05 TCGA-DH-5141-01 5 43506030 43506030 C T C5orf34 Nonsense_Mutation p.W251* 0.08 TCGA-DH-5141-01 6 146720659 146720659 G C GRM1 Silent p.G828G 0.07 TCGA-DH-5141-01 7 24903215 24903215 A G OSBPL3 Missense_Mutation p.L226P 0.06 deleterious(0) probably_damaging(0.911) TCGA-DH-5141-01 8 85774590 85774590 G A RALYL Missense_Mutation p.R171H 0.11 tolerated(0.08) benign(0.414) TCGA-DH-5141-01 9 110249405 110249405 G A KLF4 Missense_Mutation p.R390W 0.34 deleterious(0.04) possibly_damaging(0.807) TCGA-DH-5141-01 9 130270474 130270474 G A FAM129B Silent p.Y480Y 0.05 TCGA-DH-5141-01 9 14307185 14307185 C A NFIB Missense_Mutation p.R122L 0.03 deleterious(0) probably_damaging(0.992) TCGA-DH-5142-01 10 104173754 104173754 A C PSD Missense_Mutation p.F442C 0.08 deleterious(0) probably_damaging(0.997) TCGA-DH-5142-01 10 16883005 16883005 C T CUBN Silent p.T3235T 0.13 TCGA-DH-5142-01 10 26243813 26243813 A G MYO3A Missense_Mutation p.E60G 0.06 deleterious(0) probably_damaging(0.973) TCGA-DH-5142-01 11 120097624 120097624 C G OAF Missense_Mutation p.P156A 0.41 tolerated(0.23) benign(0.01) TCGA-DH-5142-01 11 22747932 22747932 G A GAS2 Missense_Mutation p.R121Q 0.09 deleterious(0) probably_damaging(0.969) TCGA-DH-5142-01 11 57982589 57982589 A T OR1S1 Missense_Mutation p.N125Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-DH-5142-01 11 93212240 93212240 G A SMCO4 Missense_Mutation p.A39V 0.09 tolerated(0.13) probably_damaging(0.982) TCGA-DH-5142-01 11 9864268 9864268 T C SBF2 Missense_Mutation p.T1054A 0.03 deleterious(0.02) benign(0.006) TCGA-DH-5142-01 12 123741402 123741402 C T C12orf65 Missense_Mutation p.R109W 0.05 deleterious(0) probably_damaging(1) TCGA-DH-5142-01 12 21205042 21205042 A C SLCO1B7 Silent p.V401V 0.16 TCGA-DH-5142-01 12 43925953 43925953 T C ADAMTS20 Missense_Mutation p.I167V 0.07 tolerated(0.14) benign(0.044) TCGA-DH-5142-01 14 70633381 70633382 - C SLC8A3 Frame_Shift_Ins p.L587Vfs*6 0.09 TCGA-DH-5142-01 15 25320979 25320979 A G SNORD116-9 3'Flank 0.48 TCGA-DH-5142-01 17 10309482 10309482 C G MYH8 Missense_Mutation p.A770P 0.38 deleterious(0.01) probably_damaging(0.947) TCGA-DH-5142-01 17 33482401 33482401 C T UNC45B Silent p.C242C 0.10 TCGA-DH-5142-01 17 34072135 34072135 C T GAS2L2 Missense_Mutation p.R794Q 0.06 deleterious(0.01) probably_damaging(0.928) TCGA-DH-5142-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.86 deleterious(0) probably_damaging(1) TCGA-DH-5142-01 1 104115689 104115689 G A AMY2B Missense_Mutation p.R107H 0.15 tolerated(0.07) benign(0.026) TCGA-DH-5142-01 1 155160204 155160204 C T MUC1 Missense_Mutation p.V359I 0.08 tolerated(0.37) benign(0.017) TCGA-DH-5142-01 1 159035847 159035847 G A AIM2 Silent p.S223S 0.09 TCGA-DH-5142-01 1 180904728 180904728 G A KIAA1614 Silent p.Q561Q 0.08 TCGA-DH-5142-01 1 182554707 182554707 C T RNASEL Missense_Mutation p.R412Q 0.07 tolerated(0.23) benign(0.167) TCGA-DH-5142-01 1 57258301 57258301 C T C1orf168 Missense_Mutation p.R62H 0.04 tolerated(0.6) benign(0) TCGA-DH-5142-01 20 1517834 1517834 G T SIRPD Missense_Mutation p.P182T 0.23 tolerated_low_confidence(0.05) possibly_damaging(0.641) TCGA-DH-5142-01 22 23401832 23401832 C T RTDR1 Missense_Mutation p.M285I 0.23 tolerated(0.44) benign(0.048) TCGA-DH-5142-01 2 131116491 131116491 G A PTPN18 Missense_Mutation p.V49M 0.30 deleterious(0.01) benign(0.005) TCGA-DH-5142-01 2 141528521 141528521 G T LRP1B Missense_Mutation p.T1852K 0.05 benign(0.403) TCGA-DH-5142-01 2 152342397 152342397 C T NEB Silent p.V8485V 0.34 TCGA-DH-5142-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-5142-01 2 219232561 219232561 C T C2orf62 Silent p.F346F 0.08 TCGA-DH-5142-01 2 26804180 26804180 C T CIB4 3'UTR 0.07 TCGA-DH-5142-01 2 27599364 27599364 C T SNX17 Missense_Mutation p.R426W 0.22 tolerated(0.12) benign(0.004) TCGA-DH-5142-01 4 106156834 106156834 C G TET2 Missense_Mutation p.L579V 0.03 tolerated(0.07) benign(0.001) TCGA-DH-5142-01 4 77244544 77244544 A G CCDC158 Missense_Mutation p.I1059T 0.09 tolerated(0.16) benign(0.033) TCGA-DH-5142-01 4 78081991 78081991 A T CCNG2 Nonsense_Mutation p.K132* 0.38 TCGA-DH-5142-01 6 111726682 111726682 T G REV3L Silent p.R186R 0.03 TCGA-DH-5142-01 6 49604490 49604490 C A RHAG Silent p.L12L 0.29 TCGA-DH-5142-01 7 21678576 21678576 G T DNAH11 Missense_Mutation p.A1618S 0.30 benign(0.047) TCGA-DH-5142-01 7 56006946 56006946 A C ZNF713 Silent p.S180S 0.19 TCGA-DH-5142-01 7 81624211 81624211 G A CACNA2D1 Silent p.F569F 0.05 TCGA-DH-5142-01 7 94293346 94293346 G A PEG10 Missense_Mutation p.D160N 0.03 deleterious(0) probably_damaging(0.997) TCGA-DH-5142-01 8 57353620 57353620 C T PENK 3'UTR 0.11 TCGA-DH-5142-01 9 107367614 107367614 C A OR13C2 Missense_Mutation p.V99L 0.08 tolerated(0.54) benign(0.004) TCGA-DH-5142-01 9 116931516 116931516 A G COL27A1 Missense_Mutation p.K561E 0.03 unknown(0) TCGA-DH-5142-01 9 131337005 131337005 C T SPTAN1 Nonsense_Mutation p.R139* 0.36 TCGA-DH-5142-01 9 140850187 140850187 C T CACNA1B Missense_Mutation p.R370C 0.29 deleterious(0.04) benign(0.255) TCGA-DH-5142-01 9 77435280 77435280 A G TRPM6 Silent p.S358S 0.26 TCGA-DH-5142-01 9 86616940 86616940 C G RMI1 Missense_Mutation p.R347G 0.13 tolerated(0.38) benign(0.024) TCGA-DH-5142-01 X 76890086 76890086 T C ATRX Missense_Mutation p.Q1603R 0.77 probably_damaging(0.994) TCGA-DH-5143-01 11 34152413 34152413 A C NAT10 Missense_Mutation p.Q433P 0.22 deleterious(0) benign(0.091) TCGA-DH-5143-01 12 8200512 8200512 G A FOXJ2 Silent p.S284S 0.09 TCGA-DH-5143-01 12 9243977 9243977 G A A2M Silent p.T763T 0.09 TCGA-DH-5143-01 12 9317915 9317915 G A PZP Silent p.T769T 0.26 TCGA-DH-5143-01 14 105752650 105752650 G A BRF1 Missense_Mutation p.A83V 0.08 tolerated(0.14) benign(0.372) TCGA-DH-5143-01 14 31348670 31348670 T C COCH Missense_Mutation p.S139P 0.26 tolerated(0.09) benign(0) TCGA-DH-5143-01 14 75248158 75248159 AT - YLPM1 Frame_Shift_Del p.H471Qfs*8 0.21 TCGA-DH-5143-01 15 34130251 34130251 T C RYR3 Missense_Mutation p.Y4024H 0.26 probably_damaging(0.998) TCGA-DH-5143-01 16 53338156 53338156 C A CHD9 Missense_Mutation p.P2080T 0.08 probably_damaging(0.999) TCGA-DH-5143-01 17 35600456 35600456 C T ACACA Missense_Mutation p.R921Q 0.25 tolerated(0.4) benign(0.021) TCGA-DH-5143-01 17 57851219 57851219 G T VMP1 Missense_Mutation p.E229D 0.11 tolerated(0.12) benign(0.17) TCGA-DH-5143-01 17 7577144 7577144 A C TP53 Missense_Mutation p.L265R 0.29 deleterious(0) probably_damaging(1) TCGA-DH-5143-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.53 deleterious(0) probably_damaging(1) TCGA-DH-5143-01 18 12493109 12493109 C T SPIRE1 Missense_Mutation p.R384Q 0.12 deleterious(0) possibly_damaging(0.755) TCGA-DH-5143-01 18 9954248 9954248 T G VAPA 3'UTR 0.06 TCGA-DH-5143-01 19 13050007 13050007 C G CALR Missense_Mutation p.L51V 0.15 tolerated(0.06) benign(0.098) TCGA-DH-5143-01 19 23837026 23837026 A C ZNF675 Missense_Mutation p.F237V 0.03 deleterious(0.01) probably_damaging(0.993) TCGA-DH-5143-01 19 39334685 39334685 T C HNRNPL Missense_Mutation p.Y257C 0.09 deleterious(0) probably_damaging(0.999) TCGA-DH-5143-01 1 118523986 118523986 T C SPAG17 Missense_Mutation p.S1971G 0.14 tolerated(0.33) benign(0.098) TCGA-DH-5143-01 1 119428085 119428085 G A TBX15 Missense_Mutation p.S254L 0.11 tolerated(0.21) probably_damaging(0.978) TCGA-DH-5143-01 1 169529938 169529938 T C F5 Missense_Mutation p.E147G 0.12 deleterious(0.03) possibly_damaging(0.904) TCGA-DH-5143-01 20 57227002 57227005 AATA - STX16 5'UTR 0.42 TCGA-DH-5143-01 21 28327096 28327096 T C ADAMTS5 Missense_Mutation p.D400G 0.04 deleterious(0) probably_damaging(0.999) TCGA-DH-5143-01 21 45750795 45750795 C T C21orf2 Missense_Mutation p.A184T 0.28 tolerated(0.24) benign(0) TCGA-DH-5143-01 22 50636413 50636413 G A TRABD Missense_Mutation p.R278Q 0.40 tolerated(0.43) benign(0.075) TCGA-DH-5143-01 2 177017514 177017514 C A HOXD4 Missense_Mutation p.N204K 0.11 deleterious(0) probably_damaging(1) TCGA-DH-5143-01 2 202013575 202013575 A C CFLAR Intron 0.19 TCGA-DH-5143-01 2 207169636 207169636 G A ZDBF2 Silent p.T128T 0.16 TCGA-DH-5143-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-5143-01 2 222347239 222347239 A G EPHA4 Missense_Mutation p.V384A 0.14 deleterious(0.01) benign(0.038) TCGA-DH-5143-01 6 572531 572531 G A EXOC2 Missense_Mutation p.L478F 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-DH-5143-01 7 155530752 155530752 A G RBM33 Splice_Site p.X465_splice 0.22 TCGA-DH-5143-01 7 56128286 56128286 G A CCT6A Intron 0.06 TCGA-DH-5143-01 7 64023338 64023338 C G ZNF680 5'UTR 0.08 TCGA-DH-5143-01 X 107084365 107084365 G A MID2 Missense_Mutation p.C157Y 0.44 deleterious(0) probably_damaging(0.997) TCGA-DH-5143-01 X 96639008 96639008 A T DIAPH2 Missense_Mutation p.Q1037L 0.07 tolerated(0.06) probably_damaging(0.981) TCGA-DH-5144-01 10 102741298 102741298 T A MRPL43 Missense_Mutation p.I220F 0.19 tolerated_low_confidence(0.07) unknown(0) TCGA-DH-5144-01 10 285431 285431 A G ZMYND11 Silent p.Q221Q 0.38 TCGA-DH-5144-01 11 40136683 40136683 A G LRRC4C Missense_Mutation p.I387T 0.52 deleterious(0) possibly_damaging(0.614) TCGA-DH-5144-01 11 65623202 65623202 C T CFL1 Splice_Site p.X104_splice 0.06 TCGA-DH-5144-01 11 68475715 68475715 C T MTL5 3'UTR 0.39 TCGA-DH-5144-01 12 27542188 27542188 C T ARNTL2 Missense_Mutation p.S245F 0.34 deleterious(0) benign(0.25) TCGA-DH-5144-01 12 52698737 52698737 C T KRT86 Missense_Mutation p.R221C 0.45 tolerated(0.08) benign(0.004) TCGA-DH-5144-01 12 53680351 53680351 A G ESPL1 Silent p.L1277L 0.49 TCGA-DH-5144-01 14 25043477 25043477 G A CTSG Missense_Mutation p.R190W 0.46 deleterious(0) possibly_damaging(0.773) TCGA-DH-5144-01 14 57684716 57684716 C T EXOC5 Missense_Mutation p.D533N 0.43 tolerated(0.16) benign(0.38) TCGA-DH-5144-01 14 65544747 65544747 C T MAX Missense_Mutation p.R60Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-DH-5144-01 14 70989595 70989595 C T ADAM20 Missense_Mutation p.S677N 0.40 tolerated(0.6) benign(0.008) TCGA-DH-5144-01 15 55731774 55731774 T C DYX1C1 Silent p.L263L 0.11 TCGA-DH-5144-01 15 56686922 56686922 C G TEX9 Missense_Mutation p.Q240E 0.13 deleterious(0.02) benign(0.015) TCGA-DH-5144-01 16 56666595 56666595 C A MT1M 5'UTR 0.51 TCGA-DH-5144-01 16 58622799 58622799 C T CNOT1 Silent p.R38R 0.06 TCGA-DH-5144-01 17 58133572 58133572 G A HEATR6 Silent p.Y702Y 0.06 TCGA-DH-5144-01 19 19906098 19906098 G A ZNF506 Missense_Mutation p.R200C 0.05 deleterious(0.04) possibly_damaging(0.613) TCGA-DH-5144-01 19 42799059 42799059 C T CIC Missense_Mutation p.R1515C 0.77 probably_damaging(0.973) TCGA-DH-5144-01 19 48343315 48343315 C G CRX 3'UTR 0.20 TCGA-DH-5144-01 19 7830088 7830088 G A CLEC4M Missense_Mutation p.A50T 0.44 tolerated(0.11) benign(0.036) TCGA-DH-5144-01 19 831737 831737 G A AZU1 Missense_Mutation p.V206I 0.45 tolerated(0.59) benign(0.008) TCGA-DH-5144-01 1 157014349 157014353 AAAAG - ARHGEF11 5'UTR 0.31 TCGA-DH-5144-01 1 159277755 159277755 T - FCER1A 3'UTR 0.31 TCGA-DH-5144-01 1 168216031 168216031 G C SFT2D2 3'UTR 0.12 TCGA-DH-5144-01 1 42048832 42048832 G A HIVEP3 Missense_Mutation p.A546V 0.06 benign(0.309) TCGA-DH-5144-01 1 78429848 78429848 C T FUBP1 Splice_Site p.X314_splice 0.87 TCGA-DH-5144-01 20 16360615 16360615 T C KIF16B Missense_Mutation p.K678E 0.13 tolerated(0.07) possibly_damaging(0.615) TCGA-DH-5144-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-5144-01 2 27355105 27355105 C T PREB Missense_Mutation p.D307N 0.39 tolerated(0.1) benign(0) TCGA-DH-5144-01 2 98426153 98426153 G A TMEM131 Missense_Mutation p.P685S 0.07 deleterious(0) probably_damaging(0.998) TCGA-DH-5144-01 3 12613687 12613687 A G MKRN2 Missense_Mutation p.S153G 0.50 tolerated(0.15) benign(0.184) TCGA-DH-5144-01 3 195778763 195778763 C G TFRC 3'UTR 0.06 TCGA-DH-5144-01 3 39170636 39170636 T C TTC21A Missense_Mutation p.I664T 0.45 deleterious(0) benign(0.341) TCGA-DH-5144-01 3 47041457 47041457 C T NBEAL2 Missense_Mutation p.R1290W 0.07 deleterious(0) probably_damaging(0.968) TCGA-DH-5144-01 5 15937211 15937211 C T FBXL7 Silent p.C464C 0.26 TCGA-DH-5144-01 5 35857056 35857057 CT - IL7R 5'UTR 0.47 TCGA-DH-5144-01 5 79282781 79282781 C T MTX3 Missense_Mutation p.S183N 0.05 tolerated(0.29) benign(0.001) TCGA-DH-5144-01 6 170591869 170591869 C T DLL1 3'UTR 0.47 TCGA-DH-5144-01 6 33235064 33235064 G A VPS52 Silent p.N342N 0.40 TCGA-DH-5144-01 6 35446212 35446212 C T TEAD3 Missense_Mutation p.R160Q 0.07 tolerated(0.9) benign(0.015) TCGA-DH-5144-01 6 43023893 43023893 C T MRPL2 Missense_Mutation p.R149H 0.38 deleterious(0.04) probably_damaging(1) TCGA-DH-5144-01 7 148801188 148801188 G A ZNF425 Missense_Mutation p.T592M 0.05 deleterious(0.04) benign(0.217) TCGA-DH-5144-01 9 139418369 139418369 C T NOTCH1 Missense_Mutation p.C68Y 0.17 deleterious(0) probably_damaging(1) TCGA-DH-5144-01 X 107930900 107930900 A G COL4A5 Missense_Mutation p.K1502E 0.05 benign(0.076) TCGA-DH-5144-01 X 109444269 109444269 T C AMMECR1 Missense_Mutation p.H267R 0.46 tolerated(0.19) benign(0.03) TCGA-DH-5144-01 X 132887716 132887716 G A GPC3 Silent p.G275G 0.51 TCGA-DH-5144-01 X 150349210 150349210 C A GPR50 Missense_Mutation p.H385Q 0.44 deleterious_low_confidence(0.01) benign(0.029) TCGA-DH-5144-01 X 153175536 153175536 G A ARHGAP4 Silent p.D760D 0.07 TCGA-DH-5144-01 X 153668416 153668416 C T GDI1 Missense_Mutation p.R173W 0.37 deleterious(0) benign(0.422) TCGA-DH-5144-01 X 22266140 22266140 C T PHEX 3'UTR 0.44 TCGA-DH-5144-01 X 69670626 69670626 C T DLG3 Silent p.Y326Y 0.14 TCGA-DH-5144-01 X 76949414 76949414 A G ATRX Missense_Mutation p.V128A 0.29 probably_damaging(0.98) TCGA-DH-A669-01 11 5364389 5364389 A T OR51B5 Silent p.I122I 0.18 TCGA-DH-A669-01 12 120966794 120966794 C T COQ5 Missense_Mutation p.E51K 0.14 tolerated(0.38) benign(0.009) TCGA-DH-A669-01 12 121867855 121867855 G A KDM2B 3'UTR 0.12 TCGA-DH-A669-01 12 22199458 22199458 G C CMAS Missense_Mutation p.W74S 0.38 deleterious(0) probably_damaging(0.985) TCGA-DH-A669-01 12 47629728 47629728 A G PCED1B Silent p.L294L 0.25 TCGA-DH-A669-01 12 50135868 50135868 C T TMBIM6 5'UTR 0.50 TCGA-DH-A669-01 12 50355746 50355746 C T AQP5 5'UTR 0.88 TCGA-DH-A669-01 12 52867083 52867083 G A KRT6C Missense_Mutation p.P147S 0.65 deleterious(0) probably_damaging(0.999) TCGA-DH-A669-01 12 71974137 71974137 A G LGR5 Missense_Mutation p.N496D 0.12 tolerated(0.45) benign(0.017) TCGA-DH-A669-01 13 48936948 48936966 CAGAAACAGCTGTTATACC - RB1 Splice_Site p.X240_splice 0.83 TCGA-DH-A669-01 14 86088048 86088048 G A FLRT2 Missense_Mutation p.G64S 0.47 tolerated(0.35) benign(0.119) TCGA-DH-A669-01 15 24921479 24921479 A T NPAP1 Missense_Mutation p.E155D 0.07 deleterious(0.04) possibly_damaging(0.644) TCGA-DH-A669-01 15 55497845 55497845 T A RAB27A Missense_Mutation p.M176L 0.56 tolerated(0.79) benign(0) TCGA-DH-A669-01 16 109807 109807 G A RHBDF1 Silent p.S580S 0.45 TCGA-DH-A669-01 16 23716446 23716446 G A ERN2 Silent p.C252C 0.21 TCGA-DH-A669-01 16 48210912 48210912 G T ABCC11 Missense_Mutation p.T1154K 0.53 deleterious(0.01) benign(0.178) TCGA-DH-A669-01 16 70400656 70400656 T C DDX19A Silent p.D304D 0.20 TCGA-DH-A669-01 16 74419271 74419271 G A NPIPB15 Missense_Mutation p.R94Q 0.33 tolerated_low_confidence(0.68) benign(0.03) TCGA-DH-A669-01 17 35902074 35902074 C T SYNRG Missense_Mutation p.G1068R 0.41 deleterious(0) probably_damaging(1) TCGA-DH-A669-01 17 72700686 72700686 T C CD300LF Missense_Mutation p.T105A 0.43 tolerated(0.2) benign(0.046) TCGA-DH-A669-01 18 43685266 43685266 T G HAUS1 Missense_Mutation p.V46G 0.84 tolerated(0.08) benign(0.046) TCGA-DH-A669-01 18 6241395 6241395 G T L3MBTL4 Missense_Mutation p.Q172K 0.88 deleterious(0) possibly_damaging(0.451) TCGA-DH-A669-01 19 1056090 1056090 C T ABCA7 Nonsense_Mutation p.R1422* 0.42 TCGA-DH-A669-01 19 40541052 40541052 G - ZNF780B Frame_Shift_Del p.N573Ifs*94 0.09 TCGA-DH-A669-01 19 55143565 55143565 G A LILRB1 Missense_Mutation p.A180T 0.80 deleterious(0.02) probably_damaging(0.914) TCGA-DH-A669-01 1 156846352 156846352 A G NTRK1 Missense_Mutation p.N598S 0.31 deleterious(0) probably_damaging(0.998) TCGA-DH-A669-01 1 158061183 158061183 G A KIRREL Silent p.G436G 0.10 TCGA-DH-A669-01 1 158435787 158435787 G A OR10K1 Missense_Mutation p.A146T 0.06 tolerated(0.07) possibly_damaging(0.707) TCGA-DH-A669-01 1 17250900 17250900 G A CROCC Missense_Mutation p.V93M 0.43 probably_damaging(0.975) TCGA-DH-A669-01 1 223568629 223568629 C T C1orf65 Silent p.S604S 0.40 TCGA-DH-A669-01 1 43897195 43897195 G A SZT2 Splice_Site p.X1639_splice 0.89 TCGA-DH-A669-01 20 31035488 31035488 G A C20orf112 Missense_Mutation p.R408W 0.47 deleterious(0.01) probably_damaging(1) TCGA-DH-A669-01 20 31035489 31035489 C T C20orf112 Silent p.V407V 0.47 TCGA-DH-A669-01 20 62372750 62372750 C T SLC2A4RG Silent p.D103D 0.07 TCGA-DH-A669-01 21 38884668 38884668 G A DYRK1A Missense_Mutation p.R709H 0.33 deleterious_low_confidence(0.03) probably_damaging(0.964) TCGA-DH-A669-01 21 45978636 45978636 G A KRTAP10-3 5'UTR 0.65 TCGA-DH-A669-01 22 23114830 23114830 A G IGLV3-12 Silent p.A34A 0.37 TCGA-DH-A669-01 2 107032445 107032445 T C RGPD3 Missense_Mutation p.E1642G 0.15 tolerated_low_confidence(0.38) benign(0) TCGA-DH-A669-01 2 150064872 150064872 G A LYPD6B Missense_Mutation p.A92T 0.47 probably_damaging(0.97) TCGA-DH-A669-01 2 172549335 172549335 C T DYNC1I2 Missense_Mutation p.L53F 0.41 deleterious(0.01) probably_damaging(0.964) TCGA-DH-A669-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-A669-01 2 234526858 234526858 G A UGT1A8 Missense_Mutation p.A169T 0.33 tolerated(0.07) benign(0.004) TCGA-DH-A669-01 3 129123129 129123129 C T EFCAB12 Missense_Mutation p.R456Q 0.20 tolerated(0.23) benign(0.004) TCGA-DH-A669-01 3 147108875 147108875 T C ZIC4 Missense_Mutation p.K333E 0.27 deleterious(0) probably_damaging(0.967) TCGA-DH-A669-01 3 47088034 47088035 - TGTA SETD2 Frame_Shift_Ins p.Q2347Hfs*23 0.50 TCGA-DH-A669-01 3 47147518 47147518 T C SETD2 Missense_Mutation p.H1603R 0.17 deleterious(0) possibly_damaging(0.832) TCGA-DH-A669-01 3 49161202 49161202 G A LAMB2 Silent p.A1252A 0.28 TCGA-DH-A669-01 3 50338477 50338477 G A HYAL1 Missense_Mutation p.A311V 0.08 tolerated(0.08) possibly_damaging(0.508) TCGA-DH-A669-01 3 51751835 51751835 T A GRM2 Splice_Site p.X849_splice 0.29 TCGA-DH-A669-01 3 52643673 52643673 C T PBRM1 Silent p.P741P 0.12 TCGA-DH-A669-01 4 13600893 13600893 C T BOD1L1 Missense_Mutation p.G2544E 0.50 benign(0.004) TCGA-DH-A669-01 4 155720132 155720132 A G RBM46 Missense_Mutation p.Y273C 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-DH-A669-01 4 189026001 189026001 G A TRIML2 Missense_Mutation p.A42V 0.20 tolerated(1) benign(0) TCGA-DH-A669-01 5 21817119 21817119 C A CDH12 Missense_Mutation p.G313W 0.46 deleterious(0) probably_damaging(1) TCGA-DH-A669-01 6 132939136 132939136 T C TAAR2 Missense_Mutation p.Y70C 0.14 deleterious(0.01) benign(0.133) TCGA-DH-A669-01 6 158068387 158068387 C A ZDHHC14 Missense_Mutation p.P318T 0.59 deleterious(0) probably_damaging(0.992) TCGA-DH-A669-01 6 26156726 26156726 T A HIST1H1E Silent p.S36S 0.31 TCGA-DH-A669-01 6 30638670 30638670 C T DHX16 Missense_Mutation p.R169H 0.05 deleterious(0.04) unknown(0) TCGA-DH-A669-01 6 33638268 33638268 G A ITPR3 Missense_Mutation p.V786M 0.58 deleterious(0) probably_damaging(0.999) TCGA-DH-A669-01 6 46660106 46660106 T C TDRD6 Missense_Mutation p.L1414S 0.37 deleterious(0) probably_damaging(0.959) TCGA-DH-A669-01 6 74229701 74229701 C T EEF1A1 Missense_Mutation p.D17N 0.22 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-DH-A669-01 7 139734050 139734050 G A PARP12 Missense_Mutation p.T469M 0.37 deleterious(0.01) benign(0.065) TCGA-DH-A669-01 7 142481246 142481246 A G PRSS3P2 RNA 0.07 TCGA-DH-A669-01 7 150217736 150217736 C T GIMAP7 Missense_Mutation p.T225I 0.41 tolerated(0.1) benign(0.013) TCGA-DH-A669-01 7 83119432 83119432 C G SEMA3E Missense_Mutation p.E92Q 0.50 tolerated(0.17) possibly_damaging(0.562) TCGA-DH-A669-01 8 134128882 134128882 A G TG Missense_Mutation p.D2595G 0.46 tolerated(0.06) benign(0.02) TCGA-DH-A669-01 8 55060054 55060054 C G MRPL15 Nonsense_Mutation p.Y222* 0.08 TCGA-DH-A669-01 8 95768289 95768289 T G DPY19L4 Missense_Mutation p.S213A 0.51 tolerated(0.26) benign(0.078) TCGA-DH-A669-01 9 33463111 33463111 G A NOL6 Missense_Mutation p.L1071F 0.34 deleterious(0) probably_damaging(0.998) TCGA-DH-A66B-01 10 55581631 55581631 G C PCDH15 Missense_Mutation p.S1954C 0.15 deleterious_low_confidence(0) unknown(0) TCGA-DH-A66B-01 11 118343733 118343735 CTT - KMT2A In_Frame_Del p.S621del 0.18 TCGA-DH-A66B-01 11 34909891 34909891 T C APIP Missense_Mutation p.H137R 0.23 tolerated(0.06) benign(0.208) TCGA-DH-A66B-01 11 57798711 57798711 T C OR6Q1 Missense_Mutation p.I96T 0.06 deleterious(0) benign(0.177) TCGA-DH-A66B-01 11 65270886 65270887 - TA MALAT1 RNA 0.15 TCGA-DH-A66B-01 12 120947837 120947837 C T COQ5 Missense_Mutation p.V222I 0.25 deleterious(0.02) probably_damaging(1) TCGA-DH-A66B-01 13 32371470 32371471 TC - RXFP2 Frame_Shift_Del p.F642Yfs*5 0.28 TCGA-DH-A66B-01 14 23588124 23588124 G A CEBPE Silent p.A59A 0.15 TCGA-DH-A66B-01 14 57268721 57268721 C A OTX2 Missense_Mutation p.C209F 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-DH-A66B-01 15 67878228 67878228 C T MAP2K5 Missense_Mutation p.A108V 0.10 tolerated(0.36) benign(0.026) TCGA-DH-A66B-01 15 90212791 90212791 C T PLIN1 Missense_Mutation p.M237I 0.24 tolerated(0.24) benign(0.016) TCGA-DH-A66B-01 15 99673323 99673327 CTTAA - SYNM 3'UTR 0.29 TCGA-DH-A66B-01 16 4165289 4165291 GAG - ADCY9 In_Frame_Del p.S53del 0.14 TCGA-DH-A66B-01 16 46991039 46991040 CT - DNAJA2 Frame_Shift_Del p.G381Lfs*8 0.28 TCGA-DH-A66B-01 16 4935140 4935142 CTC - PPL In_Frame_Del p.E1172del 0.11 TCGA-DH-A66B-01 16 739166 739166 A T WDR24 Missense_Mutation p.F159I 0.31 deleterious(0) probably_damaging(0.999) TCGA-DH-A66B-01 17 26902554 26902554 G C ALDOC 5'UTR 0.25 TCGA-DH-A66B-01 17 30520157 30520157 G T RHOT1 Missense_Mutation p.R214S 0.18 tolerated(0.15) benign(0.036) TCGA-DH-A66B-01 17 38296712 38296712 C A CASC3 5'UTR 0.15 TCGA-DH-A66B-01 17 38296717 38296717 C A CASC3 5'UTR 0.14 TCGA-DH-A66B-01 17 39911897 39911897 C T JUP 3'UTR 0.50 TCGA-DH-A66B-01 17 51902246 51902246 C A KIF2B Missense_Mutation p.Q618K 0.18 tolerated(0.21) benign(0.073) TCGA-DH-A66B-01 17 7576886 7576887 - T TP53 Frame_Shift_Ins p.K321Efs*16 0.48 TCGA-DH-A66B-01 19 15807863 15807863 C T CYP4F12 Missense_Mutation p.R515W 0.17 tolerated(0.06) benign(0.056) TCGA-DH-A66B-01 19 22363763 22363763 G A ZNF676 Silent p.P252P 0.32 TCGA-DH-A66B-01 1 156815851 156815851 C T INSRR Missense_Mutation p.R624H 0.18 deleterious(0) probably_damaging(0.971) TCGA-DH-A66B-01 1 157738222 157738222 C T FCRL2 Missense_Mutation p.V289M 0.16 deleterious(0.03) probably_damaging(0.919) TCGA-DH-A66B-01 1 16524978 16524978 C T ARHGEF19 3'UTR 0.22 TCGA-DH-A66B-01 1 179084144 179084144 T A ABL2 Missense_Mutation p.E477V 0.16 deleterious(0) possibly_damaging(0.587) TCGA-DH-A66B-01 1 211652456 211652456 G A RD3 Silent p.S170S 0.18 TCGA-DH-A66B-01 1 21183987 21183987 A - EIF4G3 Frame_Shift_Del p.V1033Afs*27 0.16 TCGA-DH-A66B-01 1 240071128 240071128 C T CHRM3 Missense_Mutation p.T126M 0.34 deleterious(0) probably_damaging(0.997) TCGA-DH-A66B-01 1 27023497 27023498 CT - ARID1A Frame_Shift_Del p.H203Rfs*196 0.29 TCGA-DH-A66B-01 1 91405999 91405999 G T ZNF644 Silent p.T304T 0.24 TCGA-DH-A66B-01 21 37775114 37775114 G C CHAF1B Missense_Mutation p.S241T 0.17 tolerated(0.83) benign(0.007) TCGA-DH-A66B-01 22 31330834 31330834 A C MORC2 Silent p.V647V 0.24 TCGA-DH-A66B-01 2 163133214 163133214 A C IFIH1 Missense_Mutation p.F763V 0.15 tolerated(1) benign(0.009) TCGA-DH-A66B-01 2 175957831 175957833 CTC - ATF2 In_Frame_Del p.E381del 0.30 TCGA-DH-A66B-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-A66B-01 2 32449596 32449596 A G NLRC4 Silent p.F1007F 0.39 TCGA-DH-A66B-01 3 42750573 42750573 G A CCDC13 Missense_Mutation p.R683W 0.21 deleterious(0) probably_damaging(0.941) TCGA-DH-A66B-01 3 49867117 49867117 C T TRAIP Missense_Mutation p.R390Q 0.35 deleterious(0.03) benign(0.135) TCGA-DH-A66B-01 4 177032847 177032847 T C WDR17 Missense_Mutation p.I63T 0.30 deleterious(0) benign(0.119) TCGA-DH-A66B-01 4 38774706 38774706 T A TLR10 3'UTR 0.22 TCGA-DH-A66B-01 5 140502918 140502918 C T PCDHB4 Silent p.N446N 0.48 TCGA-DH-A66B-01 6 33261741 33261741 G - RGL2 Intron 0.16 TCGA-DH-A66B-01 6 33632727 33632727 A G ITPR3 Missense_Mutation p.E410G 0.33 deleterious(0) possibly_damaging(0.794) TCGA-DH-A66B-01 6 51768522 51768522 C G PKHD1 Missense_Mutation p.W2290S 0.28 tolerated(0.11) benign(0.41) TCGA-DH-A66B-01 7 121693973 121693973 C T PTPRZ1 Nonsense_Mutation p.Q2088* 0.39 TCGA-DH-A66B-01 7 21824082 21824082 G C DNAH11 Missense_Mutation p.R3181T 0.09 benign(0.197) TCGA-DH-A66B-01 7 47407972 47407972 G A TNS3 Silent p.T757T 0.22 TCGA-DH-A66B-01 7 51093066 51093066 C T COBL Missense_Mutation p.A1170T 0.17 tolerated(0.08) benign(0.003) TCGA-DH-A66B-01 7 99364768 99364768 C T CYP3A4 Missense_Mutation p.E262K 0.22 tolerated(1) benign(0) TCGA-DH-A66B-01 8 144886879 144886882 GGGA - SCRIB Frame_Shift_Del p.P956Afs*18 0.27 TCGA-DH-A66B-01 8 24181517 24181517 G A ADAM28 Splice_Site p.X297_splice 0.24 TCGA-DH-A66B-01 8 75932115 75932115 T C CRISPLD1 Missense_Mutation p.S380P 0.50 tolerated(0.6) probably_damaging(0.992) TCGA-DH-A66B-01 9 116224037 116224037 G A RGS3 Missense_Mutation p.R44H 0.17 tolerated_low_confidence(0.21) unknown(0) TCGA-DH-A66B-01 9 116246504 116246506 CTT - RGS3 In_Frame_Del p.F207del 0.14 TCGA-DH-A66B-01 9 139412302 139412302 C A NOTCH1 Missense_Mutation p.R448L 0.23 tolerated(0.09) probably_damaging(0.997) TCGA-DH-A66B-01 9 90535986 90535986 G A SPATA31C1 RNA 0.15 TCGA-DH-A66B-01 X 76938097 76938100 TCTT - ATRX Frame_Shift_Del p.Q883Rfs*21 0.69 TCGA-DH-A66D-01 10 108489868 108489868 C T SORCS1 Missense_Mutation p.V322M 0.06 deleterious(0.03) benign(0.328) TCGA-DH-A66D-01 10 35929433 35929433 G T FZD8 Missense_Mutation p.P309T 0.16 deleterious(0) probably_damaging(1) TCGA-DH-A66D-01 11 118235895 118235895 G C UBE4A Missense_Mutation p.E34Q 0.62 tolerated(0.57) benign(0.006) TCGA-DH-A66D-01 11 94278078 94278078 C T FUT4 Missense_Mutation p.A260V 0.08 tolerated_low_confidence(0.16) benign(0.081) TCGA-DH-A66D-01 12 110760805 110760805 A G ATP2A2 Missense_Mutation p.K158E 0.21 deleterious(0) probably_damaging(0.92) TCGA-DH-A66D-01 12 45410035 45410035 G A DBX2 3'UTR 0.27 TCGA-DH-A66D-01 12 6601513 6601513 G A MRPL51 Missense_Mutation p.A104V 0.04 tolerated(0.64) benign(0.004) TCGA-DH-A66D-01 13 61987072 61987072 C G PCDH20 Missense_Mutation p.G387A 0.08 deleterious(0) benign(0.056) TCGA-DH-A66D-01 13 61987149 61987149 C G PCDH20 Missense_Mutation p.Q361H 0.06 deleterious(0.03) possibly_damaging(0.863) TCGA-DH-A66D-01 15 73418883 73418883 A - NEO1 Frame_Shift_Del p.N285Mfs*37 0.19 TCGA-DH-A66D-01 16 2024560 2024560 G C TBL3 Missense_Mutation p.A87P 0.29 tolerated(0.05) probably_damaging(0.947) TCGA-DH-A66D-01 16 87870115 87870115 G A SLC7A5 Missense_Mutation p.R427W 0.05 deleterious(0) benign(0.262) TCGA-DH-A66D-01 17 37199509 37199509 C T LRRC37A11P RNA 0.05 TCGA-DH-A66D-01 17 47126779 47126779 T C IGF2BP1 Silent p.S569S 0.36 TCGA-DH-A66D-01 17 61901235 61901235 G T FTSJ3 Missense_Mutation p.S411Y 0.33 tolerated(0.12) probably_damaging(0.999) TCGA-DH-A66D-01 17 7578407 7578407 G C TP53 Missense_Mutation p.R175G 0.77 deleterious(0) probably_damaging(0.985) TCGA-DH-A66D-01 18 7231999 7231999 T C LRRC30 Missense_Mutation p.L288P 0.44 deleterious(0) probably_damaging(0.999) TCGA-DH-A66D-01 19 17918750 17918750 A T B3GNT3 Missense_Mutation p.E45V 0.19 tolerated(0.27) benign(0.001) TCGA-DH-A66D-01 1 33790433 33790433 C T PHC2 3'UTR 0.18 TCGA-DH-A66D-01 20 21492938 21492938 G A NKX2-2 Nonsense_Mutation p.Q149* 0.34 TCGA-DH-A66D-01 21 47660773 47660773 G A MCM3AP Missense_Mutation p.A1862V 0.43 tolerated(0.2) benign(0.001) TCGA-DH-A66D-01 2 128631771 128631771 T C AMMECR1L Missense_Mutation p.K13R 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.587) TCGA-DH-A66D-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-A66D-01 2 3599793 3599793 T C RNASEH1 Missense_Mutation p.H117R 0.46 tolerated(1) benign(0.005) TCGA-DH-A66D-01 2 64778694 64778694 G A AFTPH Missense_Mutation p.G29E 0.19 deleterious(0.03) probably_damaging(1) TCGA-DH-A66D-01 2 73677010 73677010 A C ALMS1 Missense_Mutation p.E1118A 0.43 possibly_damaging(0.888) TCGA-DH-A66D-01 3 101477057 101477057 A T CEP97 Missense_Mutation p.K536I 0.36 deleterious(0.02) benign(0.025) TCGA-DH-A66D-01 3 122002556 122002556 C T CASR Silent p.C595C 0.13 TCGA-DH-A66D-01 3 78685148 78685148 T G ROBO1 Missense_Mutation p.M1050L 0.60 tolerated(0.55) benign(0.067) TCGA-DH-A66D-01 4 147431125 147431125 G A SLC10A7 Missense_Mutation p.T87I 0.38 tolerated(0.58) benign(0.003) TCGA-DH-A66D-01 4 175565136 175565136 G A GLRA3 Missense_Mutation p.T399I 0.17 tolerated(0.23) benign(0.002) TCGA-DH-A66D-01 4 56236091 56236091 G A SRD5A3 Missense_Mutation p.V264I 0.21 tolerated(0.69) benign(0.004) TCGA-DH-A66D-01 4 99182679 99182679 C G RAP1GDS1 5'UTR 0.30 TCGA-DH-A66D-01 5 149677330 149677330 G A ARSI Missense_Mutation p.T386M 0.49 tolerated(0.29) benign(0.028) TCGA-DH-A66D-01 5 175956358 175956358 C T RNF44 Silent p.A389A 0.20 TCGA-DH-A66D-01 5 35700785 35700785 G A SPEF2 Missense_Mutation p.A777T 0.10 deleterious(0.01) benign(0.028) TCGA-DH-A66D-01 6 117589627 117589627 G C VGLL2 Missense_Mutation p.A122P 0.20 deleterious(0.03) benign(0.004) TCGA-DH-A66D-01 6 158541488 158541488 C T SERAC1 Missense_Mutation p.V379I 0.10 tolerated(0.19) benign(0.089) TCGA-DH-A66D-01 6 76640749 76640749 G T IMPG1 Missense_Mutation p.L722M 0.14 deleterious(0.05) possibly_damaging(0.541) TCGA-DH-A66D-01 7 102920404 102920404 G A DPY19L2P2 RNA 0.28 TCGA-DH-A66D-01 7 120604816 120604816 G C ING3 Missense_Mutation p.K96N 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-DH-A66D-01 7 2968246 2968246 G A CARD11 Silent p.D580D 0.52 TCGA-DH-A66D-01 8 25232090 25232090 A G DOCK5 Missense_Mutation p.K1246E 0.19 deleterious(0) benign(0.347) TCGA-DH-A66D-01 8 42044968 42044968 C T PLAT Missense_Mutation p.G163R 0.16 deleterious(0) probably_damaging(0.969) TCGA-DH-A66D-01 8 67047371 67047372 AT - TRIM55 Frame_Shift_Del p.H163Rfs*8 0.14 TCGA-DH-A66D-01 9 27949442 27949443 - T LINGO2 Frame_Shift_Ins p.P410Tfs*5 0.17 TCGA-DH-A66D-01 X 11157494 11157494 G C ARHGAP6 Missense_Mutation p.P805R 0.67 tolerated_low_confidence(0.17) benign(0.078) TCGA-DH-A66D-01 X 122755191 122755191 T C THOC2 Missense_Mutation p.T1345A 0.12 tolerated(0.75) benign(0.009) TCGA-DH-A66D-01 X 70357061 70357061 G A MED12 Missense_Mutation p.R1859H 0.23 possibly_damaging(0.493) TCGA-DH-A66D-01 X 70823728 70823728 A T ACRC Missense_Mutation p.S201C 0.39 unknown(0) TCGA-DH-A66D-01 X 76939841 76939841 C A ATRX Nonsense_Mutation p.E303* 0.52 TCGA-DH-A66D-01 X 83129568 83129568 T G CYLC1 Missense_Mutation p.S618A 0.10 tolerated(0.49) possibly_damaging(0.697) TCGA-DH-A66F-01 10 101731881 101731881 T C DNMBP Translation_Start_Site p.M1? 0.38 deleterious(0) probably_damaging(0.993) TCGA-DH-A66F-01 10 27420861 27420861 C T YME1L1 Missense_Mutation p.R319Q 0.30 deleterious(0.01) possibly_damaging(0.714) TCGA-DH-A66F-01 10 73970535 73970535 G - ASCC1 Frame_Shift_Del p.P56Hfs*8 0.23 TCGA-DH-A66F-01 11 18339305 18339305 C T HPS5 Missense_Mutation p.R34H 0.42 deleterious(0) probably_damaging(1) TCGA-DH-A66F-01 12 10331979 10331979 G A TMEM52B 5'UTR 0.30 TCGA-DH-A66F-01 12 6422805 6422805 G A PLEKHG6 Missense_Mutation p.R50H 0.33 tolerated_low_confidence(0.19) benign(0.004) TCGA-DH-A66F-01 16 3832889 3832889 T C CREBBP Missense_Mutation p.I457V 0.05 benign(0.119) TCGA-DH-A66F-01 16 55735794 55735794 C T SLC6A2 Missense_Mutation p.T593M 0.29 deleterious(0) probably_damaging(0.973) TCGA-DH-A66F-01 17 16321163 16321163 C T TRPV2 Nonsense_Mutation p.R61* 0.22 TCGA-DH-A66F-01 17 73832286 73832286 C T UNC13D Missense_Mutation p.V481M 0.15 tolerated(0.13) benign(0.08) TCGA-DH-A66F-01 19 17752214 17752214 T C UNC13A Missense_Mutation p.Y875C 0.35 deleterious(0) probably_damaging(0.998) TCGA-DH-A66F-01 19 42792001 42792001 T C CIC Missense_Mutation p.W269R 0.60 probably_damaging(0.998) TCGA-DH-A66F-01 19 55285048 55285048 T A KIR2DL1 Missense_Mutation p.S112T 0.43 deleterious(0) probably_damaging(0.975) TCGA-DH-A66F-01 20 30432674 30432674 G A FOXS1 Silent p.F224F 0.06 TCGA-DH-A66F-01 20 44578967 44578967 G C ZNF335 Missense_Mutation p.H1126Q 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-DH-A66F-01 21 34038343 34038343 G A SYNJ1 Silent p.F724F 0.31 TCGA-DH-A66F-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-A66F-01 3 52840399 52840399 G A ITIH3 Missense_Mutation p.R678H 0.22 tolerated(0.26) benign(0.34) TCGA-DH-A66F-01 5 138713162 138713162 A G SLC23A1 Missense_Mutation p.L497P 0.46 deleterious(0) probably_damaging(0.979) TCGA-DH-A66F-01 5 64920135 64920135 A G TRIM23 5'UTR 0.13 TCGA-DH-A66F-01 6 157495231 157495231 C T ARID1B Nonsense_Mutation p.Q1039* 0.11 TCGA-DH-A66F-01 6 159653415 159653415 C T FNDC1 Missense_Mutation p.A624V 0.06 tolerated_low_confidence(0.37) unknown(0) TCGA-DH-A66F-01 9 101832036 101832036 G A COL15A1 Silent p.A1345A 0.36 TCGA-DH-A66G-01 10 98715304 98715304 C T LCOR Silent p.P309P 0.07 TCGA-DH-A66G-01 11 55322005 55322005 G A OR4C15 Missense_Mutation p.V75I 0.04 tolerated_low_confidence(0.22) benign(0.009) TCGA-DH-A66G-01 11 56950115 56950115 C A LRRC55 Missense_Mutation p.L250M 0.36 deleterious(0) probably_damaging(0.952) TCGA-DH-A66G-01 11 5809859 5809859 A T OR52N1 Missense_Mutation p.V63D 0.24 deleterious(0) benign(0.028) TCGA-DH-A66G-01 11 67816592 67816592 A G TCIRG1 Missense_Mutation p.E573G 0.06 deleterious(0.02) benign(0.311) TCGA-DH-A66G-01 12 20801759 20801759 C T PDE3A Silent p.V901V 0.30 TCGA-DH-A66G-01 12 54925286 54925286 G T NCKAP1L Silent p.V872V 0.36 TCGA-DH-A66G-01 12 57960998 57960998 T C KIF5A Splice_Site p.X197_splice 0.36 TCGA-DH-A66G-01 14 33291625 33291625 A G AKAP6 Missense_Mutation p.M1536V 0.06 tolerated_low_confidence(1) benign(0.004) TCGA-DH-A66G-01 16 20396116 20396116 T C PDILT Missense_Mutation p.E87G 0.36 tolerated(0.23) possibly_damaging(0.765) TCGA-DH-A66G-01 16 56913501 56913501 C A SLC12A3 Silent p.I461I 0.12 TCGA-DH-A66G-01 16 66943887 66943887 A - CDH16 Splice_Site p.X759_splice 0.22 TCGA-DH-A66G-01 16 68288858 68288858 T C PLA2G15 Silent p.F107F 0.04 TCGA-DH-A66G-01 17 61988150 61988150 G C CSHL1 Missense_Mutation p.L49V 0.38 tolerated(0.1) probably_damaging(0.968) TCGA-DH-A66G-01 17 7163601 7163601 G A CLDN7 3'UTR 0.06 TCGA-DH-A66G-01 17 7578395 7578395 G C TP53 Missense_Mutation p.H179D 0.64 deleterious(0) probably_damaging(1) TCGA-DH-A66G-01 1 213032327 213032327 T A FLVCR1 Missense_Mutation p.L178Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-DH-A66G-01 1 21795209 21795209 C T NBPF3 Silent p.N54N 0.04 TCGA-DH-A66G-01 1 8424286 8424286 C T RERE Missense_Mutation p.E524K 0.05 probably_damaging(0.991) TCGA-DH-A66G-01 22 29727519 29727519 C G AP1B1 Missense_Mutation p.A815P 0.06 deleterious(0) probably_damaging(0.92) TCGA-DH-A66G-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-A66G-01 2 68371826 68371826 C T WDR92 Missense_Mutation p.M102I 0.06 tolerated(0.71) benign(0) TCGA-DH-A66G-01 3 118949027 118949027 T C B4GALT4 5'UTR 0.07 TCGA-DH-A66G-01 3 138474713 138474713 C G PIK3CB Missense_Mutation p.D94H 0.04 deleterious(0) probably_damaging(0.998) TCGA-DH-A66G-01 4 146823889 146823889 G A ZNF827 Silent p.A174A 0.41 TCGA-DH-A66G-01 4 89060981 89060981 C T ABCG2 Missense_Mutation p.R56Q 0.21 tolerated(0.27) benign(0.006) TCGA-DH-A66G-01 5 101834424 101834424 G A SLCO6A1 Missense_Mutation p.S42L 0.21 tolerated(0.3) benign(0.045) TCGA-DH-A66G-01 5 180651273 180651273 G A TRIM41 Missense_Mutation p.E92K 0.05 deleterious(0.01) unknown(0) TCGA-DH-A66G-01 5 57751226 57751226 G A PLK2 Silent p.Y547Y 0.10 TCGA-DH-A66G-01 5 6738842 6738842 G A PAPD7 Missense_Mutation p.S46N 0.20 deleterious(0) possibly_damaging(0.878) TCGA-DH-A66G-01 6 56323949 56323949 C G DST Missense_Mutation p.V5124L 0.05 probably_damaging(0.996) TCGA-DH-A66G-01 6 70866564 70866564 A G COL19A1 Silent p.G747G 0.33 TCGA-DH-A66G-01 8 145154909 145154909 G A SHARPIN Missense_Mutation p.P147L 0.05 tolerated(0.12) benign(0.085) TCGA-DH-A66G-01 8 17486008 17486008 T A PDGFRL Missense_Mutation p.L173H 0.07 deleterious(0) probably_damaging(0.926) TCGA-DH-A66G-01 8 25132947 25132947 G C DOCK5 Missense_Mutation p.E72Q 0.26 tolerated(0.06) benign(0.017) TCGA-DH-A66G-01 9 139757897 139757897 G T EDF1 Missense_Mutation p.A45D 0.06 tolerated(0.09) possibly_damaging(0.493) TCGA-DH-A66G-01 9 21239548 21239548 C T IFNA14 Silent p.V129V 0.33 TCGA-DH-A66G-01 X 132160726 132160726 T C USP26 Missense_Mutation p.H508R 0.39 deleterious(0.01) possibly_damaging(0.652) TCGA-DH-A66G-01 X 135750295 135750295 C T ARHGEF6 Missense_Mutation p.E742K 0.04 deleterious(0) possibly_damaging(0.564) TCGA-DH-A66G-01 X 144905825 144905825 G T SLITRK2 Missense_Mutation p.V628F 0.06 deleterious(0.01) probably_damaging(0.923) TCGA-DH-A66G-01 X 24228669 24228669 G - ZFX Frame_Shift_Del p.L533Yfs*2 0.28 TCGA-DH-A66G-01 X 39933903 39933903 C A BCOR Silent p.P232P 0.04 TCGA-DH-A66G-01 X 76875862 76875865 CACT - ATRX Splice_Site p.X1757_splice 0.20 TCGA-DH-A7UR-01 10 103783291 103783291 C G C10orf76 Missense_Mutation p.E204D 0.36 tolerated(0.44) benign(0.001) TCGA-DH-A7UR-01 10 114905777 114905780 CAAC - TCF7L2 Frame_Shift_Del p.P267Cfs*17 0.11 TCGA-DH-A7UR-01 10 21804129 21804129 C A SKIDA1 Missense_Mutation p.D875Y 0.35 deleterious(0.01) unknown(0) TCGA-DH-A7UR-01 10 30739449 30739452 GTAA - MAP3K8 Splice_Site p.X256_splice 0.24 TCGA-DH-A7UR-01 10 32320036 32320036 A T KIF5B Missense_Mutation p.Y516N 0.14 tolerated(0.48) benign(0.001) TCGA-DH-A7UR-01 10 5204929 5204929 G A AKR1CL1 Missense_Mutation p.R50C 0.31 deleterious(0.04) benign(0.087) TCGA-DH-A7UR-01 10 61012753 61012753 C T FAM13C Silent p.E446E 0.06 TCGA-DH-A7UR-01 10 91465121 91465121 A G KIF20B Missense_Mutation p.R24G 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-DH-A7UR-01 10 93244255 93244255 C T HECTD2 Intron 0.20 TCGA-DH-A7UR-01 10 93247529 93247529 C T HECTD2 Silent p.I395I 0.14 TCGA-DH-A7UR-01 11 17981080 17981080 G A SERGEF Silent p.L316L 0.41 TCGA-DH-A7UR-01 11 418476 418476 C T ANO9 Nonsense_Mutation p.W748* 0.33 TCGA-DH-A7UR-01 11 55418641 55418641 A C OR4S2 Missense_Mutation p.K88Q 0.35 deleterious(0) possibly_damaging(0.642) TCGA-DH-A7UR-01 11 65124210 65124210 C T TIGD3 Missense_Mutation p.R311W 0.06 deleterious(0) probably_damaging(0.999) TCGA-DH-A7UR-01 11 68747839 68747839 C T MRGPRD Missense_Mutation p.R206Q 0.06 tolerated(0.73) benign(0.352) TCGA-DH-A7UR-01 12 117691483 117691483 T C NOS1 Missense_Mutation p.R904G 0.06 deleterious(0.04) possibly_damaging(0.489) TCGA-DH-A7UR-01 12 123481449 123481449 G T PITPNM2 Missense_Mutation p.P494H 0.42 deleterious(0) probably_damaging(0.999) TCGA-DH-A7UR-01 12 33031009 33031009 C T PKP2 Missense_Mutation p.G269R 0.15 tolerated(0.13) benign(0.275) TCGA-DH-A7UR-01 12 46123899 46123903 TACTT - ARID2 Frame_Shift_Del p.T56Rfs*8 0.34 TCGA-DH-A7UR-01 12 50045824 50045824 G A FMNL3 Missense_Mutation p.P499S 0.09 tolerated(1) benign(0.014) TCGA-DH-A7UR-01 12 51281429 51281432 TAAG - TMPRSS12 3'UTR 0.44 TCGA-DH-A7UR-01 12 53647528 53647528 C T MFSD5 Silent p.T410T 0.31 TCGA-DH-A7UR-01 12 54917307 54917307 C T NCKAP1L Missense_Mutation p.R670C 0.07 deleterious(0) probably_damaging(1) TCGA-DH-A7UR-01 12 78515813 78515815 ATT - NAV3 In_Frame_Del p.L1282del 0.12 TCGA-DH-A7UR-01 13 33111032 33111032 T A N4BP2L2 Intron 0.35 TCGA-DH-A7UR-01 13 41556170 41556170 C G ELF1 Missense_Mutation p.Q7H 0.35 tolerated(0.09) probably_damaging(0.918) TCGA-DH-A7UR-01 14 75134270 75134270 G A AREL1 Nonsense_Mutation p.Q648* 0.38 TCGA-DH-A7UR-01 15 72231199 72231199 T - MYO9A Frame_Shift_Del p.N791Tfs*67 0.37 TCGA-DH-A7UR-01 15 90631839 90631839 T C IDH2 Missense_Mutation p.R172G 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-DH-A7UR-01 16 2225554 2225554 C T TRAF7 Silent p.L519L 0.05 TCGA-DH-A7UR-01 16 90038172 90038172 T C CENPBD1 Silent p.T53T 0.36 TCGA-DH-A7UR-01 17 10547674 10547674 G A MYH3 Silent p.I468I 0.23 TCGA-DH-A7UR-01 17 27581333 27581333 C T CRYBA1 Missense_Mutation p.S205L 0.06 tolerated(0.36) benign(0.043) TCGA-DH-A7UR-01 17 40722112 40722113 CA - MLX Frame_Shift_Del p.Q251Vfs*27 0.12 TCGA-DH-A7UR-01 17 74277003 74277003 G A QRICH2 Missense_Mutation p.A1266V 0.05 deleterious(0) probably_damaging(0.991) TCGA-DH-A7UR-01 18 14179589 14179589 C A ANKRD20A5P RNA 0.19 TCGA-DH-A7UR-01 19 42797278 42797278 C T CIC Nonsense_Mutation p.R1214* 0.47 TCGA-DH-A7UR-01 19 4544495 4544495 C T SEMA6B Silent p.S595S 0.14 TCGA-DH-A7UR-01 19 50473717 50473717 C G SIGLEC16 RNA 0.43 TCGA-DH-A7UR-01 19 53856007 53856007 T G ZNF845 Missense_Mutation p.C693W 0.41 deleterious(0) probably_damaging(1) TCGA-DH-A7UR-01 19 8161785 8161785 G A FBN3 Missense_Mutation p.S1798L 0.32 tolerated(0.06) benign(0.243) TCGA-DH-A7UR-01 1 12144582 12144582 G A TNFRSF8 Missense_Mutation p.R42K 0.52 tolerated(1) benign(0.245) TCGA-DH-A7UR-01 1 152129200 152129200 G A RPTN Silent p.H125H 0.09 TCGA-DH-A7UR-01 1 157545510 157545510 G A FCRL4 Silent p.S480S 0.37 TCGA-DH-A7UR-01 1 170003518 170003520 TTC - KIFAP3 In_Frame_Del p.K246del 0.11 TCGA-DH-A7UR-01 1 186413580 186413580 C T PDC Missense_Mutation p.R91H 0.34 tolerated(0.06) possibly_damaging(0.774) TCGA-DH-A7UR-01 1 78430644 78430644 C A FUBP1 Nonsense_Mutation p.G216* 0.61 TCGA-DH-A7UR-01 1 8037767 8037767 C T PARK7 Silent p.H126H 0.05 TCGA-DH-A7UR-01 1 90482967 90482967 T G ZNF326 Missense_Mutation p.L340V 0.06 deleterious(0.01) probably_damaging(0.973) TCGA-DH-A7UR-01 20 62196935 62196935 G A HELZ2 Silent p.D1080D 0.08 TCGA-DH-A7UR-01 2 113940279 113940279 C T PSD4 Silent p.D82D 0.07 TCGA-DH-A7UR-01 2 122125380 122125380 G A CLASP1 Missense_Mutation p.P1224S 0.39 tolerated(0.29) benign(0.008) TCGA-DH-A7UR-01 2 197860031 197860031 C T ANKRD44 3'UTR 0.48 TCGA-DH-A7UR-01 2 234465531 234465534 ACAA - USP40 Frame_Shift_Del p.C184Kfs*14 0.44 TCGA-DH-A7UR-01 2 47221500 47221500 C T TTC7A Missense_Mutation p.A283V 0.05 tolerated(1) benign(0.122) TCGA-DH-A7UR-01 2 63272232 63272232 C T EHBP1 Silent p.R1174R 0.31 TCGA-DH-A7UR-01 3 169998192 169998192 G A PRKCI Splice_Site p.X294_splice 0.25 TCGA-DH-A7UR-01 3 186509619 186509620 TT - RFC4 Frame_Shift_Del p.K232Sfs*40 0.12 TCGA-DH-A7UR-01 4 126373108 126373108 G A FAT4 Missense_Mutation p.S3646N 0.35 benign(0.103) TCGA-DH-A7UR-01 4 175564792 175564792 T C GLRA3 3'UTR 0.39 TCGA-DH-A7UR-01 4 183713841 183713841 C T TENM3 Missense_Mutation p.R2006C 0.09 deleterious(0) possibly_damaging(0.876) TCGA-DH-A7UR-01 4 39276459 39276462 TGAG - WDR19 Frame_Shift_Del p.E1200Vfs*6 0.09 TCGA-DH-A7UR-01 4 5642373 5642375 CTC - EVC2 In_Frame_Del p.E446del 0.35 TCGA-DH-A7UR-01 4 57204654 57204658 GAGAA - AASDH Frame_Shift_Del p.S1070Cfs*12 0.20 TCGA-DH-A7UR-01 5 131321132 131321132 A C ACSL6 Missense_Mutation p.L295R 0.16 deleterious(0) probably_damaging(0.981) TCGA-DH-A7UR-01 5 195061 195061 C G LRRC14B Missense_Mutation p.L380V 0.23 tolerated(0.1) benign(0.223) TCGA-DH-A7UR-01 5 33588803 33588803 C T ADAMTS12 Silent p.P922P 0.45 TCGA-DH-A7UR-01 5 94014527 94014527 A G ANKRD32 Silent p.E614E 0.43 TCGA-DH-A7UR-01 6 56382032 56382032 C T DST Missense_Mutation p.M3484I 0.30 benign(0.341) TCGA-DH-A7UR-01 7 143748408 143748408 T G OR2A5 Missense_Mutation p.L305W 0.05 deleterious(0) probably_damaging(0.931) TCGA-DH-A7UR-01 7 27134078 27134078 G A HOXA1 Missense_Mutation p.T330I 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.702) TCGA-DH-A7UR-01 7 4874838 4874838 C T RADIL Silent p.R272R 0.09 TCGA-DH-A7UR-01 7 82582077 82582077 C T PCLO Missense_Mutation p.R2731H 0.12 unknown(0) TCGA-DH-A7UR-01 8 143604041 143604041 C T BAI1 Missense_Mutation p.T1072I 0.44 deleterious(0) benign(0) TCGA-DH-A7UR-01 9 130478265 130478266 AA - PTRH1 5'UTR 0.32 TCGA-DH-A7UR-01 9 139905168 139905168 C T ABCA2 Silent p.K2026K 0.38 TCGA-DH-A7UR-01 9 82323125 82323125 G T TLE4 Missense_Mutation p.L343F 0.07 tolerated(0.27) possibly_damaging(0.646) TCGA-DH-A7UR-01 X 122536950 122536950 G T GRIA3 Splice_Site p.X395_splice 0.38 TCGA-DH-A7UR-01 X 133379730 133379730 G T CCDC160 Missense_Mutation p.E300D 0.08 tolerated(0.11) benign(0.388) TCGA-DH-A7UR-01 X 153135292 153135292 C A L1CAM Missense_Mutation p.E363D 0.11 tolerated(0.32) possibly_damaging(0.595) TCGA-DH-A7UR-01 X 23398283 23398283 G A PTCHD1 Silent p.L309L 0.31 TCGA-DH-A7UR-01 X 23953455 23953455 G A CXorf58 Missense_Mutation p.R233H 0.04 deleterious(0) probably_damaging(0.998) TCGA-DH-A7UR-01 X 51239216 51239216 G A NUDT11 Silent p.S27S 0.36 TCGA-DH-A7UR-01 X 54161406 54161406 A C FAM120C Missense_Mutation p.F492V 0.27 tolerated(0.08) benign(0.104) TCGA-DH-A7UR-01 X 72433893 72433893 G A NAP1L2 Missense_Mutation p.P146S 0.36 tolerated(0.06) probably_damaging(0.994) TCGA-DH-A7UR-01 X 78011462 78011462 C T LPAR4 Silent p.L366L 0.06 TCGA-DH-A7US-01 11 114112981 114112981 C T ZBTB16 Missense_Mutation p.R516C 0.31 deleterious(0.01) benign(0.019) TCGA-DH-A7US-01 11 124180055 124180055 G A OR8D1 Missense_Mutation p.A203V 0.22 tolerated(0.66) benign(0.027) TCGA-DH-A7US-01 11 31561248 31561248 A G ELP4 Missense_Mutation p.K100R 0.26 deleterious(0.03) possibly_damaging(0.8) TCGA-DH-A7US-01 12 113836598 113836598 C T SDS Missense_Mutation p.A83T 0.31 deleterious(0.05) benign(0.022) TCGA-DH-A7US-01 13 52516581 52516581 C T ATP7B Missense_Mutation p.R1118H 0.34 tolerated(0.38) benign(0.002) TCGA-DH-A7US-01 14 35182753 35182754 TG - CFL2 Frame_Shift_Del p.T6Sfs*3 0.31 TCGA-DH-A7US-01 14 95085747 95085747 G A SERPINA3 Missense_Mutation p.V287M 0.16 deleterious(0.01) probably_damaging(0.918) TCGA-DH-A7US-01 15 25438381 25438381 C T SNORD115-11 3'Flank 0.36 TCGA-DH-A7US-01 15 42614214 42614214 G A GANC Missense_Mutation p.R430H 0.07 probably_damaging(1) TCGA-DH-A7US-01 15 65682659 65682659 C T IGDCC4 Missense_Mutation p.G748R 0.36 tolerated(0.11) benign(0.41) TCGA-DH-A7US-01 15 78805580 78805580 C G HYKK Silent p.V50V 0.31 TCGA-DH-A7US-01 15 79296448 79296448 C T RASGRF1 Silent p.P731P 0.36 TCGA-DH-A7US-01 15 98982908 98982908 G A FAM169B Silent p.A177A 0.39 TCGA-DH-A7US-01 17 7480734 7480734 C T EIF4A1 Missense_Mutation p.R233W 0.23 deleterious(0.03) benign(0.011) TCGA-DH-A7US-01 19 11141553 11141553 A G SMARCA4 Missense_Mutation p.D1177G 0.16 probably_damaging(0.977) TCGA-DH-A7US-01 19 12502322 12502322 C T ZNF799 Missense_Mutation p.R297Q 0.04 tolerated(0.52) benign(0.015) TCGA-DH-A7US-01 19 42791828 42791828 G A CIC Nonsense_Mutation p.W238* 0.09 TCGA-DH-A7US-01 19 4445407 4445407 G A UBXN6 3'UTR 0.04 TCGA-DH-A7US-01 19 46998531 46998531 G A PNMAL2 Silent p.A64A 0.57 TCGA-DH-A7US-01 1 87043729 87043729 C T CLCA4 Missense_Mutation p.A699V 0.56 tolerated(0.05) benign(0.016) TCGA-DH-A7US-01 20 35060261 35060261 C A DLGAP4 Silent p.P47P 0.39 TCGA-DH-A7US-01 20 44505808 44505808 G T ZSWIM3 Missense_Mutation p.S204I 0.08 deleterious(0) possibly_damaging(0.836) TCGA-DH-A7US-01 20 57782005 57782005 T C ZNF831 Silent p.S1307S 0.03 TCGA-DH-A7US-01 20 58571755 58571755 A G CDH26 Missense_Mutation p.N653S 0.04 tolerated(0.44) benign(0.003) TCGA-DH-A7US-01 22 30414015 30414015 C G MTMR3 Missense_Mutation p.P592A 0.06 tolerated(0.34) probably_damaging(0.999) TCGA-DH-A7US-01 2 141264436 141264436 C T LRP1B Missense_Mutation p.C2817Y 0.08 possibly_damaging(0.712) TCGA-DH-A7US-01 2 17847757 17847757 C A SMC6 Missense_Mutation p.D1031Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-DH-A7US-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-A7US-01 2 33518314 33518314 G A LTBP1 Missense_Mutation p.G1067D 0.43 deleterious(0.01) probably_damaging(0.958) TCGA-DH-A7US-01 3 114058118 114058118 G A ZBTB20 Missense_Mutation p.R654C 0.08 deleterious(0) probably_damaging(0.993) TCGA-DH-A7US-01 3 114070191 114070191 G A ZBTB20 Missense_Mutation p.S245L 0.14 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-DH-A7US-01 3 52546660 52546660 G A STAB1 Splice_Site p.X1009_splice 0.17 TCGA-DH-A7US-01 3 97868352 97868352 G A OR5H14 Silent p.G41G 0.34 TCGA-DH-A7US-01 4 13604541 13604541 T C BOD1L1 Missense_Mutation p.Q1328R 0.17 benign(0.051) TCGA-DH-A7US-01 4 3015524 3015524 G T GRK4 Missense_Mutation p.R237I 0.07 deleterious(0.01) possibly_damaging(0.865) TCGA-DH-A7US-01 4 79328944 79328944 A G FRAS1 Silent p.V1419V 0.08 TCGA-DH-A7US-01 5 149359993 149359993 G A SLC26A2 Silent p.R279R 0.19 TCGA-DH-A7US-01 5 149677437 149677437 C T ARSI Nonsense_Mutation p.W350* 0.14 TCGA-DH-A7US-01 5 176016160 176016160 C T CDHR2 Silent p.A995A 0.07 TCGA-DH-A7US-01 6 36076344 36076344 G A MAPK14 3'UTR 0.27 TCGA-DH-A7US-01 9 124528875 124528875 C G DAB2IP Silent p.L493L 0.41 TCGA-DH-A7US-01 9 21141038 21141038 A C IFNW1 Missense_Mutation p.S178A 0.03 deleterious(0.04) benign(0.129) TCGA-DH-A7US-01 X 1743284 1743284 G A ASMT Missense_Mutation p.A123T 0.04 deleterious(0) probably_damaging(0.997) TCGA-DH-A7UT-01 11 66311297 66311297 G A ZDHHC24 Missense_Mutation p.A146V 0.09 tolerated(0.51) benign(0.044) TCGA-DH-A7UT-01 14 64724100 64724100 C T ESR2 Intron 0.34 TCGA-DH-A7UT-01 14 74427895 74427895 C T COQ6 Missense_Mutation p.T304M 0.30 deleterious(0.02) possibly_damaging(0.667) TCGA-DH-A7UT-01 17 38420949 38420949 C G WIPF2 Missense_Mutation p.S174C 0.36 deleterious(0.02) benign(0.006) TCGA-DH-A7UT-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.65 deleterious(0) probably_damaging(1) TCGA-DH-A7UT-01 19 22154888 22154888 C G ZNF208 Missense_Mutation p.S983T 0.08 tolerated(0.52) benign(0.001) TCGA-DH-A7UT-01 19 55019288 55019288 A C LAIR2 Silent p.R85R 0.24 TCGA-DH-A7UT-01 19 58199603 58199603 C T ZNF551 Missense_Mutation p.R654C 0.08 tolerated(0.11) benign(0.11) TCGA-DH-A7UT-01 20 37356207 37356207 C G SLC32A1 Missense_Mutation p.A168G 0.17 tolerated(0.18) benign(0.078) TCGA-DH-A7UT-01 20 5294667 5294667 G A PROKR2 Missense_Mutation p.R117W 0.25 deleterious(0) probably_damaging(0.978) TCGA-DH-A7UT-01 20 6064808 6064808 C T FERMT1 Missense_Mutation p.A533T 0.27 tolerated(1) benign(0.024) TCGA-DH-A7UT-01 22 37268425 37268425 T A NCF4 Missense_Mutation p.D195E 0.26 tolerated(0.23) benign(0.129) TCGA-DH-A7UT-01 2 187503008 187503008 T C ITGAV Silent p.F269F 0.26 TCGA-DH-A7UT-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-A7UT-01 2 234669406 234669406 C G UGT1A8 Intron 0.05 TCGA-DH-A7UT-01 2 27665758 27665758 G A KRTCAP3 Missense_Mutation p.R88H 0.11 tolerated(0.31) benign(0.004) TCGA-DH-A7UT-01 2 96970602 96970602 G A SNRNP200 Missense_Mutation p.S17L 0.22 deleterious(0) probably_damaging(0.913) TCGA-DH-A7UT-01 5 37044506 37044506 C G NIPBL Missense_Mutation p.P2056A 0.37 deleterious(0) probably_damaging(0.998) TCGA-DH-A7UT-01 5 37046250 37046250 T G NIPBL Missense_Mutation p.F2180V 0.13 deleterious(0) probably_damaging(0.985) TCGA-DH-A7UT-01 5 50689479 50689479 A G ISL1 3'UTR 0.38 TCGA-DH-A7UT-01 6 127771348 127771348 C T KIAA0408 Silent p.T95T 0.35 TCGA-DH-A7UT-01 6 142399907 142399907 G A NMBR Missense_Mutation p.R186C 0.05 tolerated(0.17) possibly_damaging(0.636) TCGA-DH-A7UT-01 6 41002719 41002719 C T UNC5CL Missense_Mutation p.R32Q 0.16 tolerated_low_confidence(0.07) benign(0.005) TCGA-DH-A7UT-01 7 100365618 100365618 G A ZAN Silent p.Q1675Q 0.15 TCGA-DH-A7UT-01 7 122338322 122338322 C G RNF133 Missense_Mutation p.R217S 0.28 deleterious(0.03) probably_damaging(0.994) TCGA-DH-A7UT-01 9 84199093 84199093 C T TLE1 3'UTR 0.24 TCGA-DH-A7UU-01 10 27400913 27400913 A C YME1L1 Missense_Mutation p.V772G 0.15 tolerated(0.37) benign(0.044) TCGA-DH-A7UU-01 10 50944446 50944446 C A OGDHL Missense_Mutation p.S904I 0.11 tolerated(0.06) benign(0.018) TCGA-DH-A7UU-01 10 55755352 55755352 A G PCDH15 Intron 0.08 TCGA-DH-A7UU-01 10 89711890 89711890 A G PTEN Missense_Mutation p.S170G 0.35 deleterious(0) probably_damaging(1) TCGA-DH-A7UU-01 11 1268039 1268039 C A MUC5B Missense_Mutation p.T3310N 0.51 unknown(0) TCGA-DH-A7UU-01 11 47825055 47825055 C G NUP160 Missense_Mutation p.V904L 0.29 tolerated(0.35) benign(0.041) TCGA-DH-A7UU-01 11 4903910 4903910 T C OR51T1 Missense_Mutation p.S288P 0.13 deleterious(0) probably_damaging(0.999) TCGA-DH-A7UU-01 12 29639273 29639273 G A OVCH1 Missense_Mutation p.R301W 0.23 tolerated(0.06) benign(0.057) TCGA-DH-A7UU-01 12 62918870 62918870 T G MON2 Missense_Mutation p.F372L 0.49 deleterious(0.03) benign(0.31) TCGA-DH-A7UU-01 13 25264609 25264609 G C ATP12A Missense_Mutation p.R227P 0.27 deleterious(0) possibly_damaging(0.449) TCGA-DH-A7UU-01 14 75516298 75516298 A C MLH3 Missense_Mutation p.S21A 0.52 deleterious(0) probably_damaging(0.988) TCGA-DH-A7UU-01 16 21212761 21212761 G T ZP2 Silent p.V541V 0.20 TCGA-DH-A7UU-01 16 53495680 53495680 T C RBL2 Silent p.A458A 0.29 TCGA-DH-A7UU-01 16 55719086 55719086 G A SLC6A2 Missense_Mutation p.G226R 0.20 deleterious(0) probably_damaging(0.998) TCGA-DH-A7UU-01 16 57803769 57803769 G T KIFC3 Silent p.A346A 0.06 TCGA-DH-A7UU-01 16 89167609 89167609 A G ACSF3 Missense_Mutation p.I174V 0.25 tolerated(0.77) benign(0.001) TCGA-DH-A7UU-01 17 16256394 16256394 C A CENPV Missense_Mutation p.Q119H 0.18 deleterious(0.01) possibly_damaging(0.718) TCGA-DH-A7UU-01 17 47233957 47233957 G A B4GALNT2 Missense_Mutation p.V224I 0.21 tolerated(0.85) benign(0.001) TCGA-DH-A7UU-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.77 deleterious(0) probably_damaging(0.993) TCGA-DH-A7UU-01 18 48325597 48325597 T C MRO 3'UTR 0.21 TCGA-DH-A7UU-01 19 57966781 57966781 A T VN1R1 3'UTR 0.25 TCGA-DH-A7UU-01 1 152732432 152732432 A G KPRP Missense_Mutation p.E123G 0.05 tolerated(0.1) benign(0.068) TCGA-DH-A7UU-01 1 186057368 186057368 A C HMCN1 Silent p.P3179P 0.43 TCGA-DH-A7UU-01 1 237167474 237167474 G A MT1HL1 3'UTR 0.40 TCGA-DH-A7UU-01 1 89659075 89659075 C T GBP4 Silent p.S128S 0.17 TCGA-DH-A7UU-01 20 49575490 49575490 A G MOCS3 Silent p.E37E 0.22 TCGA-DH-A7UU-01 22 26222385 26222385 T C MYO18B Missense_Mutation p.M902T 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-DH-A7UU-01 22 32813109 32813109 C T BPIFC Silent p.S429S 0.03 TCGA-DH-A7UU-01 2 121747054 121747054 G T GLI2 Silent p.P1188P 0.07 TCGA-DH-A7UU-01 2 168725946 168725946 G C B3GALT1 Missense_Mutation p.E133Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-DH-A7UU-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DH-A7UU-01 2 27446568 27446568 A G CAD Missense_Mutation p.N316S 0.38 deleterious(0) probably_damaging(0.99) TCGA-DH-A7UU-01 3 100961732 100961732 G A IMPG2 Missense_Mutation p.S941L 0.22 deleterious(0) probably_damaging(0.999) TCGA-DH-A7UU-01 3 148545614 148545614 T A CPB1 Missense_Mutation p.L2M 0.23 tolerated(0.21) unknown(0) TCGA-DH-A7UU-01 4 146032140 146032140 C T ABCE1 Nonsense_Mutation p.R212* 0.09 TCGA-DH-A7UU-01 4 187630588 187630588 G T FAT1 Silent p.R132R 0.36 TCGA-DH-A7UU-01 4 57829700 57829700 G C NOA1 Missense_Mutation p.I671M 0.27 deleterious(0.03) benign(0.291) TCGA-DH-A7UU-01 4 74306410 74306410 G T AFP Missense_Mutation p.R121I 0.24 deleterious(0) probably_damaging(0.914) TCGA-DH-A7UU-01 4 74313361 74313361 T A AFP Missense_Mutation p.F342L 0.28 tolerated(0.68) benign(0.032) TCGA-DH-A7UU-01 4 79443927 79443927 A G FRAS1 Silent p.P3591P 0.25 TCGA-DH-A7UU-01 5 126145957 126145957 C T LMNB1 Missense_Mutation p.A243V 0.53 deleterious(0.02) possibly_damaging(0.794) TCGA-DH-A7UU-01 5 95091155 95091155 C G RHOBTB3 Missense_Mutation p.N246K 0.20 tolerated(1) benign(0.007) TCGA-DH-A7UU-01 6 12121547 12121547 G C HIVEP1 Missense_Mutation p.D507H 0.12 deleterious(0.01) possibly_damaging(0.897) TCGA-DH-A7UU-01 6 22287738 22287738 G T PRL Missense_Mutation p.L193I 0.05 tolerated(0.38) benign(0.276) TCGA-DH-A7UU-01 6 29639047 29639047 C T MOG Intron 0.33 TCGA-DH-A7UU-01 6 45917025 45917025 C A CLIC5 Missense_Mutation p.E248D 0.39 deleterious(0) probably_damaging(0.981) TCGA-DH-A7UU-01 6 7888998 7888998 C G TXNDC5 Silent p.A301A 0.05 TCGA-DH-A7UU-01 7 100732732 100732732 A G TRIM56 Silent p.G713G 0.23 TCGA-DH-A7UU-01 7 134221422 134221422 T A AKR1B10 Missense_Mutation p.D150E 0.36 tolerated(0.12) benign(0.441) TCGA-DH-A7UU-01 7 150690908 150690908 G C NOS3 Missense_Mutation p.S6T 0.40 deleterious_low_confidence(0) benign(0.294) TCGA-DH-A7UU-01 7 92926525 92926526 AA - CCDC132 Frame_Shift_Del p.S445Cfs*9 0.15 TCGA-DH-A7UU-01 8 131812796 131812796 T C ADCY8 Missense_Mutation p.D979G 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-DH-A7UU-01 8 28837639 28837639 G A HMBOX1 Silent p.R184R 0.05 TCGA-DH-A7UU-01 8 36671774 36671774 T C KCNU1 Missense_Mutation p.I261T 0.37 deleterious(0) possibly_damaging(0.88) TCGA-DH-A7UU-01 8 72948521 72948521 A G TRPA1 Splice_Site p.X852_splice 0.42 TCGA-DH-A7UU-01 9 112963524 112963527 CCCT AAAAA C9orf152 Frame_Shift_Ins p.R141Ffs*8 0.21 TCGA-DH-A7UU-01 9 74347285 74347285 G T TMEM2 Silent p.T515T 0.05 TCGA-DH-A7UU-01 9 78943022 78943022 C T PCSK5 Silent p.N1452N 0.04 TCGA-DH-A7UU-01 9 84606222 84606222 C A SPATA31D1 Nonsense_Mutation p.C279* 0.06 TCGA-DH-A7UU-01 9 94493426 94493426 A T ROR2 Missense_Mutation p.Y317N 0.29 deleterious(0) probably_damaging(0.99) TCGA-DH-A7UU-01 X 108887278 108887278 G A ACSL4 Nonsense_Mutation p.R706* 0.41 TCGA-DH-A7UU-01 X 47774902 47774902 G A ZNF81 Missense_Mutation p.R286K 0.17 tolerated(1) benign(0) TCGA-DH-A7UV-01 10 55581623 55581623 G C PCDH15 Missense_Mutation p.L1957V 0.40 deleterious_low_confidence(0) unknown(0) TCGA-DH-A7UV-01 10 89725053 89725053 T C PTEN Missense_Mutation p.Y346H 0.33 tolerated(0.24) possibly_damaging(0.643) TCGA-DH-A7UV-01 10 90350440 90350440 C G LIPJ 5'UTR 0.04 TCGA-DH-A7UV-01 11 123598184 123598184 C G ZNF202 Missense_Mutation p.G318R 0.07 deleterious(0.03) probably_damaging(1) TCGA-DH-A7UV-01 11 130058057 130058057 G A ST14 Missense_Mutation p.V44I 0.42 tolerated(0.09) benign(0.007) TCGA-DH-A7UV-01 11 59604797 59604797 T C GIF Missense_Mutation p.K241E 0.36 tolerated(0.8) benign(0) TCGA-DH-A7UV-01 12 6483848 6483848 T C SCNN1A Silent p.E93E 0.14 TCGA-DH-A7UV-01 13 25451163 25451163 C T RNF17 Missense_Mutation p.R1538W 0.30 deleterious(0) possibly_damaging(0.465) TCGA-DH-A7UV-01 14 90722942 90722942 A G PSMC1 Translation_Start_Site p.M1? 0.60 deleterious_low_confidence(0.01) benign(0.067) TCGA-DH-A7UV-01 15 41191832 41191832 C G VPS18 Missense_Mutation p.F272L 0.46 tolerated(0.5) benign(0.011) TCGA-DH-A7UV-01 15 63855173 63855173 T G USP3 Missense_Mutation p.F243V 0.35 deleterious(0) probably_damaging(0.958) TCGA-DH-A7UV-01 15 76449044 76449044 A G C15orf27 Missense_Mutation p.I109M 0.34 deleterious(0) possibly_damaging(0.79) TCGA-DH-A7UV-01 17 28537613 28537613 C T SLC6A4 Missense_Mutation p.V457I 0.05 tolerated(0.75) benign(0.002) TCGA-DH-A7UV-01 17 33258005 33258005 G T CCT6B Silent p.V471V 0.35 TCGA-DH-A7UV-01 17 617974 617974 C T VPS53 5'UTR 0.32 TCGA-DH-A7UV-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.75 deleterious(0) probably_damaging(0.998) TCGA-DH-A7UV-01 18 48252529 48252529 G A MAPK4 Missense_Mutation p.D351N 0.26 tolerated(0.05) benign(0.439) TCGA-DH-A7UV-01 19 11106926 11106928 AGA - SMARCA4 In_Frame_Del p.K546del 0.09 TCGA-DH-A7UV-01 1 120491682 120491683 TT - NOTCH2 Frame_Shift_Del p.K849Rfs*6 0.23 TCGA-DH-A7UV-01 1 151499471 151499473 AGA - CGN In_Frame_Del p.K596del 0.35 TCGA-DH-A7UV-01 1 152278788 152278788 G A FLG Silent p.H2858H 0.16 TCGA-DH-A7UV-01 1 198509705 198509705 T C ATP6V1G3 Missense_Mutation p.K26E 0.39 deleterious(0) probably_damaging(0.999) TCGA-DH-A7UV-01 1 62739953 62739953 C T KANK4 Missense_Mutation p.V275M 0.54 tolerated(0.12) benign(0) TCGA-DH-A7UV-01 20 18168246 18168246 C T CSRP2BP 3'UTR 0.40 TCGA-DH-A7UV-01 21 46074320 46074320 C G KRTAP12-4 Missense_Mutation p.C71S 0.27 deleterious(0.03) benign(0.005) TCGA-DH-A7UV-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DH-A7UV-01 2 74719415 74719415 C T TTC31 Intron 0.37 TCGA-DH-A7UV-01 3 155546108 155546108 G C SLC33A1 Missense_Mutation p.S514C 0.42 tolerated(0.09) benign(0.212) TCGA-DH-A7UV-01 3 158991594 158991594 G A IQCJ-SCHIP1 Intron 0.23 TCGA-DH-A7UV-01 3 190126225 190126225 G A CLDN16 Missense_Mutation p.G239R 0.44 deleterious(0) probably_damaging(0.99) TCGA-DH-A7UV-01 3 3078916 3078916 C A CNTN4 Missense_Mutation p.P666T 0.44 deleterious(0) probably_damaging(0.998) TCGA-DH-A7UV-01 3 44974664 44974664 C T ZDHHC3 Missense_Mutation p.A186T 0.39 deleterious(0.03) possibly_damaging(0.73) TCGA-DH-A7UV-01 4 152053505 152053506 TC - SH3D19 Frame_Shift_Del p.E650Rfs*9 0.18 TCGA-DH-A7UV-01 4 2691417 2691417 C T FAM193A Missense_Mutation p.P548L 0.09 deleterious(0) probably_damaging(0.996) TCGA-DH-A7UV-01 6 117717388 117717388 T C ROS1 Silent p.P273P 0.04 TCGA-DH-A7UV-01 6 159457333 159457333 G A TAGAP Silent p.H574H 0.05 TCGA-DH-A7UV-01 6 31322068 31322068 C T HLA-B 3'UTR 0.12 TCGA-DH-A7UV-01 7 127235774 127235774 T C FSCN3 Silent p.D186D 0.21 TCGA-DH-A7UV-01 7 80302135 80302135 T C CD36 Missense_Mutation p.L392S 0.15 deleterious(0) probably_damaging(0.969) TCGA-DH-A7UV-01 9 14797510 14797510 T G FREM1 Missense_Mutation p.K1275N 0.29 deleterious(0.01) possibly_damaging(0.564) TCGA-DH-A7UV-01 X 39913577 39913577 T C BCOR Missense_Mutation p.N1584S 0.75 tolerated(0.72) benign(0.025) TCGA-DH-A7UV-01 X 50085216 50085216 A C CCNB3 Missense_Mutation p.T1178P 0.07 deleterious(0.02) possibly_damaging(0.664) TCGA-DH-A7UV-01 X 76938029 76938029 G - ATRX Frame_Shift_Del p.R907Dfs*63 0.09 TCGA-DH-A7UV-01 X 76939607 76939607 A - ATRX Frame_Shift_Del p.S381Qfs*33 0.49 TCGA-DU-5847-01 10 89720803 89720804 - A PTEN Frame_Shift_Ins p.T319Nfs*6 0.42 TCGA-DU-5847-01 11 418583 418583 C T ANO9 Missense_Mutation p.A713T 0.36 deleterious(0.01) probably_damaging(1) TCGA-DU-5847-01 11 61731663 61731663 C A BEST1 3'UTR 0.12 TCGA-DU-5847-01 12 54902315 54902315 G A NCKAP1L Missense_Mutation p.G169D 0.33 deleterious(0.02) possibly_damaging(0.509) TCGA-DU-5847-01 13 48953728 48953728 A G RB1 Splice_Site p.X445_splice 0.53 TCGA-DU-5847-01 15 23889301 23889301 C T MAGEL2 Missense_Mutation p.V594I 0.35 tolerated(0.38) benign(0.092) TCGA-DU-5847-01 15 52622645 52622645 C T MYO5A Missense_Mutation p.R1462Q 0.36 tolerated(0.09) benign(0.184) TCGA-DU-5847-01 16 1828006 1828006 C T SPSB3 Missense_Mutation p.R179H 0.31 tolerated(0.46) benign(0.013) TCGA-DU-5847-01 16 71958718 71958718 T C IST1 Missense_Mutation p.V313A 0.68 tolerated(0.93) benign(0.002) TCGA-DU-5847-01 17 18396173 18396173 G A LGALS9C Silent p.S308S 0.26 TCGA-DU-5847-01 17 29497016 29497016 G A NF1 Splice_Site p.X196_splice 0.29 TCGA-DU-5847-01 17 29677227 29677227 C T NF1 Nonsense_Mutation p.R2450* 0.34 TCGA-DU-5847-01 17 3181629 3181629 T A OR3A2 Missense_Mutation p.T201S 0.31 deleterious(0) possibly_damaging(0.895) TCGA-DU-5847-01 17 73096729 73096729 C G SLC16A5 Missense_Mutation p.A324G 0.36 deleterious(0.05) possibly_damaging(0.734) TCGA-DU-5847-01 17 7462320 7462320 C G TNFSF13 5'UTR 0.10 TCGA-DU-5847-01 18 29099849 29099849 C T DSG2 Silent p.P55P 0.42 TCGA-DU-5847-01 19 11462650 11462650 G A CCDC159 Splice_Site p.X164_splice 0.38 TCGA-DU-5847-01 19 21720518 21720518 C A ZNF429 Missense_Mutation p.H555N 0.24 deleterious(0) probably_damaging(0.997) TCGA-DU-5847-01 19 30935048 30935048 C T ZNF536 Silent p.R193R 0.40 TCGA-DU-5847-01 19 40998962 40998962 G A SPTBN4 Splice_Site p.X196_splice 0.22 TCGA-DU-5847-01 1 152278733 152278733 G T FLG Missense_Mutation p.Q2877K 0.20 benign(0.14) TCGA-DU-5847-01 1 152382287 152382287 C T CRNN Missense_Mutation p.R424H 0.29 tolerated(0.56) benign(0) TCGA-DU-5847-01 1 207265091 207265091 T A C4BPB Missense_Mutation p.I112N 0.11 deleterious(0) probably_damaging(0.958) TCGA-DU-5847-01 1 228486408 228486408 C T OBSCN Silent p.L4400L 0.44 TCGA-DU-5847-01 20 62577859 62577859 C T UCKL1 Missense_Mutation p.R84Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-DU-5847-01 2 130832726 130832726 G A POTEF Silent p.H773H 0.27 TCGA-DU-5847-01 2 191301884 191301884 G A MFSD6 Missense_Mutation p.V377I 0.37 tolerated(0.07) benign(0.432) TCGA-DU-5847-01 2 21226162 21226162 C T APOB Silent p.R4044R 0.30 TCGA-DU-5847-01 2 54081969 54081969 A C GPR75 5'UTR 0.38 TCGA-DU-5847-01 3 39431997 39431997 C T SLC25A38 Missense_Mutation p.P92L 0.19 deleterious(0) probably_damaging(0.992) TCGA-DU-5847-01 4 159526262 159526262 C T RXFP1 Silent p.C145C 0.29 TCGA-DU-5847-01 4 188924355 188924355 C T ZFP42 Missense_Mutation p.P132S 0.38 tolerated(0.14) benign(0.018) TCGA-DU-5847-01 4 55956204 55956204 C T KDR Silent p.S1037S 0.34 TCGA-DU-5847-01 4 83763471 83763471 G C SEC31A Missense_Mutation p.H930Q 0.36 tolerated(0.3) benign(0.136) TCGA-DU-5847-01 5 140594885 140594885 C T PCDHB13 Missense_Mutation p.A397V 0.32 tolerated_low_confidence(1) benign(0) TCGA-DU-5847-01 5 178418950 178418950 C A GRM6 Missense_Mutation p.W213C 0.28 deleterious(0) probably_damaging(1) TCGA-DU-5847-01 5 178418951 178418951 C T GRM6 Nonsense_Mutation p.W213* 0.29 TCGA-DU-5847-01 6 100062566 100062566 C G PRDM13 Missense_Mutation p.D685E 0.64 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-DU-5847-01 6 12122495 12122495 G C HIVEP1 Missense_Mutation p.V823L 0.70 deleterious(0) probably_damaging(0.997) TCGA-DU-5847-01 6 47846810 47846810 A C PTCHD4 Missense_Mutation p.N590K 0.77 tolerated(0.28) benign(0.187) TCGA-DU-5847-01 7 107167729 107167729 C T COG5 Missense_Mutation p.G195E 0.53 deleterious(0) probably_damaging(0.92) TCGA-DU-5847-01 X 108921235 108921235 C T ACSL4 Silent p.P345P 0.39 TCGA-DU-5847-01 X 125685930 125685930 C T DCAF12L1 Missense_Mutation p.R221Q 0.36 tolerated(0.36) benign(0.011) TCGA-DU-5847-01 X 134156530 134156530 G C FAM127C 5'UTR 0.47 TCGA-DU-5847-01 X 149100914 149100914 T A CXorf40B Missense_Mutation p.N109Y 0.35 deleterious(0) possibly_damaging(0.66) TCGA-DU-5847-01 X 27997150 27997150 T A DCAF8L1 3'UTR 0.44 TCGA-DU-5847-01 X 35985795 35985795 C T CXorf22 Missense_Mutation p.R554C 0.24 tolerated(0.19) benign(0.006) TCGA-DU-5847-01 X 55033526 55033526 A T APEX2 Missense_Mutation p.Q405H 0.30 tolerated(0.11) benign(0.289) TCGA-DU-5847-01 X 6451764 6451764 A T VCX3A 3'UTR 0.44 TCGA-DU-5847-01 X 67283790 67283790 G T OPHN1 Silent p.A688A 0.37 TCGA-DU-5849-01 10 16877063 16877063 G T CUBN Missense_Mutation p.H3438N 0.19 tolerated(0.51) benign(0.219) TCGA-DU-5849-01 10 55569195 55569195 T C PCDH15 Missense_Mutation p.T473A 0.06 tolerated_low_confidence(0.19) unknown(0) TCGA-DU-5849-01 12 96389484 96389484 G A HAL Missense_Mutation p.R69W 0.15 deleterious_low_confidence(0.02) benign(0.07) TCGA-DU-5849-01 14 77255468 77255468 G - ANGEL1 3'UTR 0.20 TCGA-DU-5849-01 15 63354774 63354774 G A TPM1 Splice_Site p.X235_splice 0.21 TCGA-DU-5849-01 15 80263495 80263495 G A BCL2A1 5'UTR 0.38 TCGA-DU-5849-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-5849-01 16 24372780 24372780 G A CACNG3 Missense_Mutation p.G182R 0.18 deleterious(0) probably_damaging(0.993) TCGA-DU-5849-01 16 58565875 58565875 G A CNOT1 Missense_Mutation p.T2055M 0.14 deleterious(0) possibly_damaging(0.827) TCGA-DU-5849-01 17 16336965 16336965 C T TRPV2 Silent p.T689T 0.18 TCGA-DU-5849-01 17 8054005 8054005 C T PER1 Missense_Mutation p.G7E 0.14 tolerated_low_confidence(0.05) benign(0.059) TCGA-DU-5849-01 18 12030494 12030494 G A IMPA2 3'UTR 0.35 TCGA-DU-5849-01 18 44656634 44656634 T G HDHD2 Missense_Mutation p.I126L 0.08 tolerated(0.36) benign(0) TCGA-DU-5849-01 19 15905003 15905003 G C OR10H5 Missense_Mutation p.V49L 0.07 deleterious(0.01) benign(0.141) TCGA-DU-5849-01 19 17425150 17425150 C T DDA1 Nonsense_Mutation p.R30* 0.11 TCGA-DU-5849-01 19 18191676 18191676 C T IL12RB1 Silent p.K125K 0.27 TCGA-DU-5849-01 19 4817206 4817206 T C TICAM1 Missense_Mutation p.Y395C 0.46 deleterious(0) probably_damaging(0.969) TCGA-DU-5849-01 1 160268752 160268752 T C COPA Silent p.L629L 0.22 TCGA-DU-5849-01 1 211923123 211923123 C T LPGAT1 3'UTR 0.29 TCGA-DU-5849-01 1 78444686 78444686 C A FUBP1 Translation_Start_Site p.M1? 0.20 deleterious(0) benign(0) TCGA-DU-5849-01 20 20616214 20616214 C T RALGAPA2 Missense_Mutation p.D285N 0.12 tolerated(0.64) benign(0.001) TCGA-DU-5849-01 20 57415453 57415453 C A RP4-806M20.3 5'Flank 0.31 TCGA-DU-5849-01 21 34958408 34958408 G A DONSON Missense_Mutation p.T161M 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-5849-01 21 46117735 46117735 C T KRTAP10-12 Missense_Mutation p.R207C 0.27 tolerated(1) unknown(0) TCGA-DU-5849-01 22 22749730 22749730 G A IGLV7-43 Missense_Mutation p.G85D 0.09 deleterious(0) probably_damaging(1) TCGA-DU-5849-01 22 41257198 41257198 C T DNAJB7 Silent p.E267E 0.13 TCGA-DU-5849-01 2 121684944 121684944 G A GLI2 Silent p.Q52Q 0.06 TCGA-DU-5849-01 2 58311264 58311264 A G VRK2 Silent p.V59V 0.25 TCGA-DU-5849-01 3 114070194 114070194 T C ZBTB20 Missense_Mutation p.Y244C 0.13 deleterious(0) probably_damaging(0.984) TCGA-DU-5849-01 3 134369693 134369693 G A KY Missense_Mutation p.P37L 0.23 tolerated_low_confidence(0.3) benign(0.002) TCGA-DU-5849-01 3 167508323 167508323 T C SERPINI1 Silent p.H138H 0.38 TCGA-DU-5849-01 3 52643532 52643532 T A PBRM1 Silent p.S788S 0.07 TCGA-DU-5849-01 4 62453140 62453140 A G LPHN3 Missense_Mutation p.Y84C 0.24 deleterious(0) probably_damaging(0.975) TCGA-DU-5849-01 4 77018807 77018807 C T ART3 Silent p.T264T 0.25 TCGA-DU-5849-01 5 13736040 13736040 C G DNAH5 Silent p.V3819V 0.16 TCGA-DU-5849-01 5 140474488 140474488 C T PCDHB2 Silent p.A38A 0.05 TCGA-DU-5849-01 5 141019513 141019513 G C RELL2 Missense_Mutation p.R177P 0.05 deleterious(0) probably_damaging(0.958) TCGA-DU-5849-01 5 180622162 180622162 C G TRIM7 3'UTR 0.23 TCGA-DU-5849-01 6 32030161 32030161 G A TNXB Missense_Mutation p.A2314V 0.10 benign(0.009) TCGA-DU-5849-01 6 76657112 76657112 C T IMPG1 Missense_Mutation p.G655R 0.20 tolerated(0.19) benign(0.391) TCGA-DU-5849-01 7 150439615 150439615 G A GIMAP5 Missense_Mutation p.A130T 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-DU-5849-01 8 144945366 144945366 G A EPPK1 Missense_Mutation p.R686C 0.17 probably_damaging(0.927) TCGA-DU-5849-01 8 48744441 48744441 C A PRKDC Missense_Mutation p.M2732I 0.14 benign(0) TCGA-DU-5849-01 9 106860785 106860785 G C SMC2 Missense_Mutation p.R126T 0.05 deleterious(0) benign(0.124) TCGA-DU-5849-01 9 84606296 84606296 T A SPATA31D1 Nonsense_Mutation p.L304* 0.21 TCGA-DU-5849-01 X 102338548 102338548 C T NXF3 Missense_Mutation p.V142I 0.39 tolerated(0.15) benign(0.001) TCGA-DU-5851-01 10 81113478 81113478 T C PPIF Silent p.H168H 0.23 TCGA-DU-5851-01 11 10783517 10783517 C T CTR9 Silent p.V255V 0.15 TCGA-DU-5851-01 11 85436182 85436182 C T SYTL2 Missense_Mutation p.V440I 0.19 tolerated(0.11) benign(0) TCGA-DU-5851-01 13 73303185 73303185 A C BORA Missense_Mutation p.E36A 0.18 deleterious(0) probably_damaging(0.953) TCGA-DU-5851-01 14 70842422 70842422 A G SYNJ2BP Missense_Mutation p.Y90H 0.03 tolerated(0.21) benign(0.006) TCGA-DU-5851-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.47 deleterious(0) probably_damaging(0.998) TCGA-DU-5851-01 18 61225658 61225658 A T SERPINB12 Missense_Mutation p.K81I 0.24 tolerated(0.1) possibly_damaging(0.58) TCGA-DU-5851-01 18 8825636 8825636 G T SOGA2 Missense_Mutation p.K1376N 0.24 deleterious(0) probably_damaging(1) TCGA-DU-5851-01 1 149755784 149755784 G A FCGR1A Missense_Mutation p.S93N 0.19 deleterious(0) probably_damaging(0.991) TCGA-DU-5851-01 1 160783602 160783602 C T LY9 Nonsense_Mutation p.R211* 0.19 TCGA-DU-5851-01 1 223568185 223568185 C A C1orf65 Missense_Mutation p.F456L 0.20 tolerated(0.67) benign(0.083) TCGA-DU-5851-01 1 33560160 33560160 G C ADC Missense_Mutation p.G200A 0.20 deleterious(0) possibly_damaging(0.818) TCGA-DU-5851-01 1 86590808 86590808 G T COL24A1 Missense_Mutation p.T404K 0.19 tolerated(0.75) benign(0.001) TCGA-DU-5851-01 2 170428527 170428527 G C FASTKD1 Missense_Mutation p.P5A 0.16 tolerated_low_confidence(0.35) benign(0.016) TCGA-DU-5851-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-5851-01 2 74760959 74760959 C G LOXL3 Intron 0.13 TCGA-DU-5851-01 2 97267954 97267954 C T KANSL3 Missense_Mutation p.G794D 0.31 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-DU-5851-01 3 151163027 151163027 G T IGSF10 Nonsense_Mutation p.S1581* 0.10 TCGA-DU-5851-01 4 72121038 72121038 A C SLC4A4 Silent p.R59R 0.05 TCGA-DU-5851-01 5 10264922 10264922 A G CCT5 3'UTR 0.16 TCGA-DU-5851-01 5 167858267 167858267 G A WWC1 Missense_Mutation p.V700M 0.05 deleterious(0) probably_damaging(0.933) TCGA-DU-5851-01 5 21752212 21752212 G A CDH12 Silent p.F673F 0.15 TCGA-DU-5851-01 5 41381990 41381990 G T PLCXD3 Silent p.T250T 0.22 TCGA-DU-5851-01 6 26056346 26056346 G A HIST1H1C Missense_Mutation p.S104F 0.22 deleterious(0) probably_damaging(0.999) TCGA-DU-5851-01 7 107791186 107791186 A C NRCAM Intron 0.24 TCGA-DU-5851-01 7 4259754 4259754 G T SDK1 Silent p.V1851V 0.15 TCGA-DU-5851-01 7 4855893 4855893 G A RADIL Silent p.S644S 0.24 TCGA-DU-5851-01 9 3828287 3828287 G C GLIS3 Silent p.V926V 0.27 TCGA-DU-5851-01 X 107840717 107840717 T C COL4A5 Silent p.P566P 0.06 TCGA-DU-5851-01 X 134988650 134988650 C T SAGE1 Nonsense_Mutation p.R226* 0.04 TCGA-DU-5851-01 X 64719804 64719804 G T ZC3H12B Missense_Mutation p.S342I 0.18 deleterious(0) benign(0.108) TCGA-DU-5851-01 X 76939056 76939060 ATTTA - ATRX Frame_Shift_Del p.L563Yfs*11 0.27 TCGA-DU-5852-01 10 105803313 105803313 C T COL17A1 Missense_Mutation p.G821S 0.74 probably_damaging(0.986) TCGA-DU-5852-01 10 27411836 27411836 C A YME1L1 Missense_Mutation p.R447I 0.57 deleterious(0) probably_damaging(1) TCGA-DU-5852-01 10 43595972 43595972 G A RET Missense_Mutation p.G47S 0.76 deleterious_low_confidence(0.01) benign(0.227) TCGA-DU-5852-01 10 50531225 50531225 C T C10orf71 Missense_Mutation p.P212L 0.31 tolerated(0.4) possibly_damaging(0.628) TCGA-DU-5852-01 11 113860240 113860240 C T HTR3A Missense_Mutation p.P436S 0.39 tolerated(0.73) benign(0.005) TCGA-DU-5852-01 11 123676254 123676254 G C OR6M1 Missense_Mutation p.D268E 0.35 deleterious(0.01) benign(0.309) TCGA-DU-5852-01 11 1268697 1268697 C T MUC5B Silent p.T3529T 0.31 TCGA-DU-5852-01 11 4967723 4967723 A G OR51A4 Missense_Mutation p.F203S 0.28 tolerated(0.09) possibly_damaging(0.905) TCGA-DU-5852-01 11 62530370 62530370 G A POLR2G Missense_Mutation p.D52N 0.35 tolerated(0.37) possibly_damaging(0.645) TCGA-DU-5852-01 11 66276620 66276620 C T DPP3 Silent p.F704F 0.36 TCGA-DU-5852-01 11 77931439 77931439 G A GAB2 Missense_Mutation p.P605S 0.43 tolerated(0.28) benign(0.341) TCGA-DU-5852-01 12 10746526 10746526 C T KLRAP1 RNA 0.18 TCGA-DU-5852-01 12 15774212 15774212 A G EPS8 3'UTR 0.50 TCGA-DU-5852-01 12 57501513 57501513 C T STAT6 Missense_Mutation p.G44S 0.23 tolerated(0.87) benign(0.148) TCGA-DU-5852-01 12 7843233 7843233 G A GDF3 Silent p.N112N 0.28 TCGA-DU-5852-01 12 7867929 7867929 G A DPPA3 Nonsense_Mutation p.W78* 0.32 TCGA-DU-5852-01 13 96622363 96622363 T C UGGT2 Intron 0.36 TCGA-DU-5852-01 15 20636371 20636371 G A HERC2P3 RNA 0.29 TCGA-DU-5852-01 15 74751068 74751068 A G UBL7 Silent p.I47I 0.06 TCGA-DU-5852-01 15 81181824 81181824 C T KIAA1199 Missense_Mutation p.T326M 0.32 deleterious(0) probably_damaging(0.996) TCGA-DU-5852-01 15 92706193 92706193 G A SLCO3A1 Missense_Mutation p.R654H 0.43 deleterious(0.01) possibly_damaging(0.65) TCGA-DU-5852-01 16 56928468 56928468 C T SLC12A3 Silent p.L858L 0.47 TCGA-DU-5852-01 16 77775636 77775636 G A NUDT7 Missense_Mutation p.R169H 0.37 tolerated(0.57) benign(0.001) TCGA-DU-5852-01 16 83250986 83250986 C T CDH13 Missense_Mutation p.R221W 0.37 deleterious(0) probably_damaging(0.99) TCGA-DU-5852-01 17 12656007 12656007 G A MYOCD Missense_Mutation p.A468T 0.33 tolerated(0.27) benign(0.016) TCGA-DU-5852-01 17 17721591 17721591 G A SREBF1 Missense_Mutation p.T419I 0.20 deleterious(0.03) benign(0.062) TCGA-DU-5852-01 17 18881610 18881610 C T FAM83G Missense_Mutation p.A457T 0.39 tolerated(0.31) benign(0.011) TCGA-DU-5852-01 17 1946242 1946242 G A OVCA2 Silent p.G176G 0.37 TCGA-DU-5852-01 17 8192897 8192897 A G RANGRF Missense_Mutation p.N143S 0.31 deleterious(0.05) benign(0.095) TCGA-DU-5852-01 18 14478282 14478282 C T CXADRP3 RNA 0.25 TCGA-DU-5852-01 18 21402283 21402283 A T LAMA3 Missense_Mutation p.Y791F 0.28 benign(0.125) TCGA-DU-5852-01 18 21402284 21402284 C T LAMA3 Silent p.Y791Y 0.29 TCGA-DU-5852-01 18 43496145 43496145 G A EPG5 Silent p.P1137P 0.21 TCGA-DU-5852-01 19 17327047 17327047 G A USE1 Missense_Mutation p.E101K 0.42 tolerated(0.17) benign(0.444) TCGA-DU-5852-01 19 51020955 51020955 G A LRRC4B Missense_Mutation p.A672V 0.37 tolerated_low_confidence(0.17) benign(0.069) TCGA-DU-5852-01 19 51323240 51323240 T G KLK1 Missense_Mutation p.D183A 0.29 tolerated(0.1) benign(0.105) TCGA-DU-5852-01 19 51330300 51330300 G A KLK15 Silent p.N105N 0.43 TCGA-DU-5852-01 19 55086781 55086781 G A LILRA2 Silent p.E238E 0.38 TCGA-DU-5852-01 1 113252867 113252867 C T PPM1J Missense_Mutation p.R479H 0.35 deleterious(0.01) probably_damaging(0.964) TCGA-DU-5852-01 1 159032502 159032504 TAA - AIM2 In_Frame_Del p.I337del 0.30 TCGA-DU-5852-01 1 160719612 160719612 G A SLAMF7 Silent p.E126E 0.37 TCGA-DU-5852-01 1 169512193 169512193 C T F5 Missense_Mutation p.R712H 0.34 tolerated(0.24) benign(0.153) TCGA-DU-5852-01 1 170514102 170514102 G A GORAB Intron 0.42 TCGA-DU-5852-01 1 234041367 234041367 C T SLC35F3 Missense_Mutation p.A49V 0.30 tolerated_low_confidence(0.08) probably_damaging(0.941) TCGA-DU-5852-01 1 248512354 248512354 C T OR14C36 Missense_Mutation p.A93V 0.42 tolerated(0.3) benign(0.021) TCGA-DU-5852-01 1 248637064 248637064 C T OR2T3 Missense_Mutation p.P138L 0.21 deleterious(0.03) benign(0.028) TCGA-DU-5852-01 1 52301821 52301821 C T NRD1 Missense_Mutation p.A300T 0.08 deleterious(0) probably_damaging(1) TCGA-DU-5852-01 1 70687521 70687521 G A SRSF11 Missense_Mutation p.D68N 0.20 tolerated(0.06) unknown(0) TCGA-DU-5852-01 1 94486867 94486867 G A ABCA4 Silent p.P1649P 0.34 TCGA-DU-5852-01 20 19701644 19701644 G A SLC24A3 Missense_Mutation p.V599I 0.08 tolerated(1) benign(0.147) TCGA-DU-5852-01 20 33068913 33068913 C T ITCH Silent p.S706S 0.33 TCGA-DU-5852-01 20 39802384 39802384 G A PLCG1 Missense_Mutation p.E1163K 0.11 deleterious(0.01) possibly_damaging(0.723) TCGA-DU-5852-01 20 5283062 5283062 G A PROKR2 Missense_Mutation p.T260M 0.17 deleterious(0) probably_damaging(0.999) TCGA-DU-5852-01 21 11039030 11039030 G T BAGE2 RNA 0.07 TCGA-DU-5852-01 21 38536430 38536430 T G TTC3 Missense_Mutation p.L1083R 0.20 deleterious(0.04) benign(0.41) TCGA-DU-5852-01 2 101893691 101893691 G A RNF149 3'UTR 0.12 TCGA-DU-5852-01 2 114002201 114002201 C A PAX8 Missense_Mutation p.R64S 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-DU-5852-01 2 152977056 152977056 T C STAM2 3'UTR 0.38 TCGA-DU-5852-01 2 37468832 37468832 G T NDUFAF7 Missense_Mutation p.V174F 0.34 tolerated(0.08) benign(0.013) TCGA-DU-5852-01 2 61468710 61468710 C T USP34 Silent p.S2254S 0.32 TCGA-DU-5852-01 3 11301013 11301013 G A HRH1 Missense_Mutation p.R97H 0.46 tolerated(0.43) benign(0.052) TCGA-DU-5852-01 3 52651430 52651430 G A PBRM1 Missense_Mutation p.P556S 0.37 deleterious(0.04) probably_damaging(0.916) TCGA-DU-5852-01 5 140221840 140221840 C T PCDHA8 Nonsense_Mutation p.Q312* 0.21 TCGA-DU-5852-01 6 105232863 105232863 G A HACE1 Missense_Mutation p.P469L 0.34 tolerated(0.3) benign(0.004) TCGA-DU-5852-01 6 118635328 118635328 A C SLC35F1 Missense_Mutation p.L380F 0.35 tolerated(0.41) benign(0.363) TCGA-DU-5852-01 6 32947789 32947789 T A BRD2 Missense_Mutation p.L711I 0.29 deleterious(0) benign(0.364) TCGA-DU-5852-01 6 34498365 34498365 G A PACSIN1 Splice_Site p.X346_splice 0.47 TCGA-DU-5852-01 6 47680159 47680159 C T GPR115 Nonsense_Mutation p.R123* 0.30 TCGA-DU-5852-01 6 76024624 76024624 C T FILIP1 Silent p.S308S 0.41 TCGA-DU-5852-01 7 148451085 148451085 G A CUL1 Missense_Mutation p.C53Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-DU-5852-01 7 55221710 55221710 C T EGFR Missense_Mutation p.R252C 0.22 deleterious(0.03) possibly_damaging(0.899) TCGA-DU-5852-01 7 55268101 55268101 A T EGFR Missense_Mutation p.I981F 0.02 deleterious(0) probably_damaging(0.997) TCGA-DU-5852-01 7 70231260 70231260 C A AUTS2 Missense_Mutation p.F543L 0.47 deleterious(0.04) benign(0.23) TCGA-DU-5852-01 7 99795727 99795727 G A STAG3 Missense_Mutation p.M394I 0.31 deleterious(0) probably_damaging(0.999) TCGA-DU-5852-01 8 142228890 142228890 G A SLC45A4 Silent p.F232F 0.24 TCGA-DU-5852-01 8 20112700 20112700 C T LZTS1 5'UTR 0.33 TCGA-DU-5852-01 8 38250441 38250441 C T LETM2 Silent p.D96D 0.32 TCGA-DU-5852-01 8 88885200 88885200 G C DCAF4L2 Missense_Mutation p.Q334E 0.32 deleterious(0) probably_damaging(0.952) TCGA-DU-5852-01 9 91954798 91954798 A G SECISBP2 Missense_Mutation p.N411S 0.13 tolerated(0.12) benign(0.117) TCGA-DU-5852-01 X 100613413 100613413 C A BTK Silent p.G329G 0.37 TCGA-DU-5852-01 X 101909474 101909474 A G GPRASP1 Silent p.A211A 0.05 TCGA-DU-5852-01 X 105855292 105855292 G A CXorf57 5'UTR 0.45 TCGA-DU-5852-01 X 135112296 135112296 G C SLC9A6 Missense_Mutation p.G541A 0.23 deleterious(0) benign(0.412) TCGA-DU-5852-01 X 135405491 135405491 G A GPR112 Missense_Mutation p.E209K 0.21 tolerated(0.1) benign(0.068) TCGA-DU-5852-01 X 144337223 144337223 C T SPANXN1 Silent p.P36P 0.40 TCGA-DU-5852-01 X 154065952 154065952 G A F8 Nonsense_Mutation p.R2326* 0.23 TCGA-DU-5852-01 X 15580079 15580079 T C ACE2 Silent p.G789G 0.37 TCGA-DU-5852-01 X 37027911 37027911 G A FAM47C Silent p.P476P 0.33 TCGA-DU-5852-01 X 49088176 49088176 G A CACNA1F Missense_Mutation p.P80L 0.25 deleterious(0) probably_damaging(1) TCGA-DU-5852-01 X 70389237 70389237 C T NLGN3 Nonsense_Mutation p.R613* 0.27 TCGA-DU-5852-01 X 76764056 76764056 A T ATRX Missense_Mutation p.Y2418N 0.36 possibly_damaging(0.76) TCGA-DU-5852-01 X 89177201 89177201 T A TGIF2LX Missense_Mutation p.D39E 0.38 tolerated(0.2) benign(0.333) TCGA-DU-5852-01 X 91133712 91133712 G A PCDH11X Missense_Mutation p.V825I 0.41 tolerated(1) benign(0.009) TCGA-DU-5853-01 10 102683830 102683830 G C FAM178A Missense_Mutation p.E358Q 0.09 tolerated(0.08) possibly_damaging(0.87) TCGA-DU-5853-01 11 118344301 118344301 T A KMT2A Silent p.S809S 0.04 TCGA-DU-5853-01 11 73714925 73714925 G A UCP3 Silent p.L257L 0.04 TCGA-DU-5853-01 12 101577979 101577979 C A SLC5A8 Missense_Mutation p.D329Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-DU-5853-01 12 53293635 53293635 C T KRT8 Missense_Mutation p.R330H 0.45 tolerated(0.55) benign(0.008) TCGA-DU-5853-01 12 57036472 57036472 G C ATP5B Silent p.T312T 0.27 TCGA-DU-5853-01 14 94929626 94929626 T A SERPINA9 Missense_Mutation p.H371L 0.15 deleterious(0) probably_damaging(0.996) TCGA-DU-5853-01 16 56670367 56670367 C T MT1M 3'Flank 0.28 TCGA-DU-5853-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.87 deleterious(0) probably_damaging(0.998) TCGA-DU-5853-01 19 43439742 43439742 A G PSG7 Missense_Mutation p.Y82H 0.05 deleterious(0.02) probably_damaging(0.975) TCGA-DU-5853-01 19 9046747 9046747 T A MUC16 Silent p.P11628P 0.09 TCGA-DU-5853-01 1 155013046 155013046 C T DCST1 Silent p.R159R 0.29 TCGA-DU-5853-01 20 21492966 21492966 C G NKX2-2 Missense_Mutation p.Q139H 0.38 deleterious(0.05) probably_damaging(1) TCGA-DU-5853-01 22 31740738 31740738 C T PATZ1 Missense_Mutation p.G284E 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-DU-5853-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-5853-01 2 74901749 74901749 G A SEMA4F Missense_Mutation p.R316Q 0.08 tolerated(0.59) benign(0.136) TCGA-DU-5853-01 3 38793869 38793869 G T SCN10A Missense_Mutation p.S532R 0.07 deleterious(0.04) benign(0.288) TCGA-DU-5853-01 4 55561801 55561801 T G KIT Missense_Mutation p.V64G 0.05 deleterious(0) probably_damaging(0.976) TCGA-DU-5853-01 5 140730818 140730818 A G PCDHGB1 Missense_Mutation p.I331V 0.07 tolerated(0.41) benign(0.035) TCGA-DU-5853-01 6 167717405 167717405 A G UNC93A Splice_Site p.X209_splice 0.21 TCGA-DU-5853-01 7 150693876 150693876 C T NOS3 Missense_Mutation p.R149W 0.23 deleterious(0) probably_damaging(1) TCGA-DU-5853-01 7 151842271 151842271 T G KMT2C Missense_Mutation p.K4714T 0.12 probably_damaging(0.998) TCGA-DU-5853-01 X 76845411 76845411 C T ATRX Splice_Site p.X2037_splice 0.76 TCGA-DU-5854-01 11 14303174 14303174 A C RRAS2 Silent p.A167A 0.22 TCGA-DU-5854-01 11 55038007 55038007 G T TRIM48 3'UTR 0.21 TCGA-DU-5854-01 11 55433000 55433000 C T OR4C6 Missense_Mutation p.R120C 0.20 deleterious_low_confidence(0.04) benign(0.066) TCGA-DU-5854-01 12 122091088 122091088 C T MORN3 Missense_Mutation p.G181S 0.19 deleterious(0) probably_damaging(0.997) TCGA-DU-5854-01 12 126139203 126139203 G A TMEM132B Missense_Mutation p.G1062R 0.20 deleterious(0) possibly_damaging(0.902) TCGA-DU-5854-01 12 21684077 21684077 A - C12orf39 Frame_Shift_Del p.N102Tfs*23 0.39 TCGA-DU-5854-01 12 53187985 53187985 C T KRT3 Missense_Mutation p.R259Q 0.21 tolerated(0.1) benign(0.389) TCGA-DU-5854-01 13 108863573 108863573 G C LIG4 Missense_Mutation p.P15R 0.19 deleterious(0.01) probably_damaging(0.961) TCGA-DU-5854-01 14 107078546 107078546 G A IGHV1-58 Missense_Mutation p.R60C 0.22 possibly_damaging(0.589) TCGA-DU-5854-01 14 81329142 81329142 G A CEP128 Missense_Mutation p.R241C 0.20 deleterious(0) probably_damaging(0.975) TCGA-DU-5854-01 15 27184436 27184436 G A GABRA5 Intron 0.30 TCGA-DU-5854-01 15 45050860 45050860 T C TRIM69 Silent p.F207F 0.26 TCGA-DU-5854-01 17 16029417 16029417 T C NCOR1 Missense_Mutation p.K538R 0.22 benign(0.015) TCGA-DU-5854-01 19 9046352 9046352 G T MUC16 Missense_Mutation p.T11760N 0.16 benign(0.402) TCGA-DU-5854-01 19 9090675 9090675 G T MUC16 Missense_Mutation p.H380Q 0.23 unknown(0) TCGA-DU-5854-01 1 12820859 12820859 G A C1orf158 Missense_Mutation p.R187H 0.16 tolerated(0.23) benign(0.083) TCGA-DU-5854-01 1 159283478 159283478 C T OR10J3 Silent p.A324A 0.10 TCGA-DU-5854-01 1 205628648 205628648 G A SLC45A3 Missense_Mutation p.A459V 0.47 tolerated(0.28) benign(0.001) TCGA-DU-5854-01 1 236766587 236766587 C G HEATR1 Missense_Mutation p.E78Q 0.23 deleterious(0.02) benign(0.383) TCGA-DU-5854-01 1 248112581 248112581 T A OR2L8 Missense_Mutation p.V141E 0.27 deleterious(0.02) possibly_damaging(0.66) TCGA-DU-5854-01 1 41948222 41948222 G A EDN2 Missense_Mutation p.R87C 0.26 deleterious(0) probably_damaging(1) TCGA-DU-5854-01 1 99157205 99157205 A G SNX7 Missense_Mutation p.T197A 0.18 deleterious(0.02) benign(0.156) TCGA-DU-5854-01 21 11038841 11038841 G C BAGE2 RNA 0.13 TCGA-DU-5854-01 21 43161994 43161994 G A RIPK4 Silent p.C453C 0.31 TCGA-DU-5854-01 2 219868992 219868992 G A CCDC108 Missense_Mutation p.P1746L 0.28 tolerated(0.41) benign(0.001) TCGA-DU-5854-01 3 124393414 124393414 G A KALRN Silent p.A473A 0.15 TCGA-DU-5854-01 3 168833251 168833251 G - MECOM Frame_Shift_Del p.S680Rfs*29 0.21 TCGA-DU-5854-01 3 31641930 31641931 - A STT3B Nonsense_Mutation p.Y286* 0.21 TCGA-DU-5854-01 3 97868995 97868995 G A OR5H14 Missense_Mutation p.A256T 0.29 deleterious(0.01) benign(0.005) TCGA-DU-5854-01 4 10445887 10445887 C T ZNF518B Missense_Mutation p.R689H 0.18 tolerated(0.16) possibly_damaging(0.791) TCGA-DU-5854-01 4 178361475 178361475 C T AGA Missense_Mutation p.S78N 0.24 tolerated(0.05) benign(0.283) TCGA-DU-5854-01 4 55139758 55139758 C T PDGFRA Silent p.I473I 0.47 TCGA-DU-5854-01 5 161324340 161324340 C T GABRA1 Missense_Mutation p.P428L 0.29 deleterious(0) probably_damaging(0.999) TCGA-DU-5854-01 5 179393883 179393883 C T RNF130 Missense_Mutation p.R358Q 0.19 deleterious(0.03) benign(0.016) TCGA-DU-5854-01 6 117248565 117248565 C T RFX6 Missense_Mutation p.P754L 0.16 deleterious_low_confidence(0.04) benign(0.064) TCGA-DU-5854-01 6 31867657 31867657 C A ZBTB12 3'UTR 0.07 TCGA-DU-5854-01 6 35427183 35427183 C A FANCE Missense_Mutation p.P397T 0.06 deleterious(0) possibly_damaging(0.897) TCGA-DU-5854-01 6 54735366 54735366 T C FAM83B Missense_Mutation p.W108R 0.21 deleterious(0) probably_damaging(1) TCGA-DU-5854-01 7 131859587 131859587 G A PLXNA4 Missense_Mutation p.R1323W 0.22 deleterious(0) probably_damaging(1) TCGA-DU-5854-01 7 142573227 142573227 T C TRPV6 Silent p.L372L 0.21 TCGA-DU-5854-01 7 148910879 148910879 G A ZNF282 Missense_Mutation p.G385R 0.09 tolerated(0.36) benign(0.041) TCGA-DU-5854-01 7 156437272 156437272 G A RNF32 Missense_Mutation p.R32Q 0.21 tolerated(1) benign(0.002) TCGA-DU-5854-01 7 31746856 31746856 G A PPP1R17 Missense_Mutation p.V143M 0.15 tolerated_low_confidence(1) benign(0.005) TCGA-DU-5854-01 7 88965634 88965634 A G ZNF804B Missense_Mutation p.N1113S 0.19 tolerated(0.53) benign(0.437) TCGA-DU-5854-01 7 94038721 94038721 G A COL1A2 Missense_Mutation p.V294I 0.26 unknown(0) TCGA-DU-5854-01 8 32621577 32621577 C T NRG1 Missense_Mutation p.T532M 0.30 deleterious(0) probably_damaging(0.993) TCGA-DU-5854-01 8 37729072 37729072 G T RAB11FIP1 Missense_Mutation p.P1083Q 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.76) TCGA-DU-5854-01 9 129453250 129453250 C T LMX1B Silent p.D154D 0.15 TCGA-DU-5854-01 9 36102223 36102223 C A RECK Nonsense_Mutation p.Y477* 0.15 TCGA-DU-5854-01 9 71155606 71155606 G A TMEM252 Missense_Mutation p.A42V 0.31 tolerated(0.69) benign(0.001) TCGA-DU-5854-01 X 105855370 105855370 G A CXorf57 Silent p.P20P 0.23 TCGA-DU-5854-01 X 134994995 134994995 C T SAGE1 Missense_Mutation p.A885V 0.17 tolerated(1) benign(0) TCGA-DU-5854-01 X 152159963 152159963 G A PNMA5 Silent p.D60D 0.29 TCGA-DU-5854-01 X 154293907 154293907 T C MTCP1 Missense_Mutation p.Q88R 0.29 tolerated(0.19) benign(0.002) TCGA-DU-5854-01 X 3228242 3228242 G A MXRA5 Missense_Mutation p.R2668C 0.35 deleterious(0) probably_damaging(0.959) TCGA-DU-5854-01 X 83724443 83724443 A C HDX Silent p.S96S 0.30 TCGA-DU-5855-01 10 7780699 7780699 G A ITIH2 Silent p.T691T 0.20 TCGA-DU-5855-01 11 121421301 121421301 A G SORL1 Missense_Mutation p.K730E 0.10 deleterious(0) probably_damaging(0.984) TCGA-DU-5855-01 11 36596675 36596675 C T RAG1 Silent p.D607D 0.23 TCGA-DU-5855-01 11 66326855 66326855 C T CTSF 3'Flank 0.40 TCGA-DU-5855-01 12 112617095 112617095 G C HECTD4 Silent p.V3552V 0.30 TCGA-DU-5855-01 12 46245951 46245960 ATCAAAAGTG - ARID2 Frame_Shift_Del p.K1350* 0.37 TCGA-DU-5855-01 12 53008406 53008406 G A KRT73 Missense_Mutation p.A259V 0.10 deleterious(0.04) benign(0.021) TCGA-DU-5855-01 12 70824288 70824288 G A KCNMB4 Missense_Mutation p.R163H 0.11 deleterious(0.03) probably_damaging(0.994) TCGA-DU-5855-01 12 95535225 95535225 G A FGD6 Missense_Mutation p.P926S 0.05 deleterious(0.03) possibly_damaging(0.522) TCGA-DU-5855-01 12 989896 989896 C T WNK1 Missense_Mutation p.P948S 0.03 tolerated(0.56) benign(0.019) TCGA-DU-5855-01 13 36776075 36776075 A G SOHLH2 Silent p.V145V 0.25 TCGA-DU-5855-01 13 49710555 49710555 G A FNDC3A Missense_Mutation p.R193H 0.49 deleterious(0.01) probably_damaging(0.972) TCGA-DU-5855-01 14 23940135 23940135 A G NGDN Silent p.Q31Q 0.06 TCGA-DU-5855-01 14 39784908 39784908 G A CTAGE5 Missense_Mutation p.A465T 0.22 deleterious(0.01) possibly_damaging(0.833) TCGA-DU-5855-01 14 91755473 91755473 C T CCDC88C Missense_Mutation p.A1473T 0.24 tolerated(0.91) benign(0.002) TCGA-DU-5855-01 15 40241413 40241413 C T EIF2AK4 Missense_Mutation p.R153W 0.38 deleterious(0.01) possibly_damaging(0.453) TCGA-DU-5855-01 15 40509802 40509802 C T BUB1B Silent p.S928S 0.25 TCGA-DU-5855-01 17 38151212 38151212 C G PSMD3 Missense_Mutation p.H329Q 0.30 tolerated(0.32) benign(0.007) TCGA-DU-5855-01 17 38711759 38711759 G A CCR7 Silent p.F124F 0.47 TCGA-DU-5855-01 17 42169818 42169818 G A HDAC5 Missense_Mutation p.R285C 0.41 deleterious(0) probably_damaging(0.995) TCGA-DU-5855-01 17 73924171 73924171 T G FBF1 Missense_Mutation p.H114P 0.30 tolerated(0.59) benign(0.131) TCGA-DU-5855-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.88 deleterious(0) probably_damaging(0.998) TCGA-DU-5855-01 17 8132163 8132163 T C CTC1 Missense_Mutation p.N1090S 0.17 deleterious(0) possibly_damaging(0.547) TCGA-DU-5855-01 18 30349844 30349844 C T KLHL14 Silent p.A237A 0.26 TCGA-DU-5855-01 18 74729068 74729068 G A MBP Missense_Mutation p.A99V 0.06 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DU-5855-01 19 3977234 3977234 G A EEF2 Silent p.L788L 0.33 TCGA-DU-5855-01 19 40408740 40408740 C T FCGBP Missense_Mutation p.A1367T 0.34 benign(0.401) TCGA-DU-5855-01 19 45974181 45974181 C T FOSB Missense_Mutation p.R141W 0.36 deleterious(0.02) possibly_damaging(0.689) TCGA-DU-5855-01 19 58385268 58385268 C T ZNF814 Missense_Mutation p.C497Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-DU-5855-01 1 152188371 152188371 G T HRNR Missense_Mutation p.Q1912K 0.07 unknown(0) TCGA-DU-5855-01 1 17084292 17084292 A G MST1L RNA 0.12 TCGA-DU-5855-01 1 17084293 17084293 G T MST1L RNA 0.12 TCGA-DU-5855-01 1 196973949 196973949 T C CFHR5 Missense_Mutation p.W497R 0.31 deleterious(0.03) possibly_damaging(0.731) TCGA-DU-5855-01 1 201112999 201112999 G C TMEM9 Missense_Mutation p.I116M 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-DU-5855-01 1 204518349 204518349 A C MDM4 Missense_Mutation p.T338P 0.11 tolerated(0.19) benign(0.003) TCGA-DU-5855-01 1 222717481 222717481 C T HHIPL2 Silent p.T124T 0.20 TCGA-DU-5855-01 1 41579187 41579187 C T SCMH1 Silent p.S161S 0.36 TCGA-DU-5855-01 1 44079328 44079328 C T PTPRF Missense_Mutation p.A1338V 0.29 deleterious(0.02) benign(0.127) TCGA-DU-5855-01 20 39795459 39795459 A G PLCG1 Missense_Mutation p.Y754C 0.38 deleterious(0) probably_damaging(0.973) TCGA-DU-5855-01 20 4705632 4705632 C T PRND Silent p.C145C 0.18 TCGA-DU-5855-01 2 135744754 135744754 G A MAP3K19 Missense_Mutation p.T563I 0.13 tolerated(0.22) possibly_damaging(0.794) TCGA-DU-5855-01 2 163134056 163134056 A C IFIH1 Missense_Mutation p.F638C 0.49 tolerated(0.18) benign(0.375) TCGA-DU-5855-01 2 179470362 179470362 C T TTN Missense_Mutation p.R17887H 0.05 TCGA-DU-5855-01 2 189876504 189876504 A G COL3A1 3'UTR 0.33 TCGA-DU-5855-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-5855-01 3 156763496 156763496 A G LEKR1 Missense_Mutation p.Q679R 0.35 tolerated(0.25) unknown(0) TCGA-DU-5855-01 3 185393095 185393095 G A IGF2BP2 Silent p.L354L 0.11 TCGA-DU-5855-01 3 58094210 58094210 A G FLNB Missense_Mutation p.E656G 0.36 deleterious(0) probably_damaging(0.967) TCGA-DU-5855-01 4 114280346 114280346 C T ANK2 Silent p.T3524T 0.18 TCGA-DU-5855-01 4 119649799 119649799 G A SEC24D Silent p.L959L 0.16 TCGA-DU-5855-01 5 140308171 140308171 T C PCDHAC1 Missense_Mutation p.V565A 0.06 tolerated(0.57) benign(0.012) TCGA-DU-5855-01 5 141335138 141335138 C T PCDH12 Missense_Mutation p.R760H 0.06 tolerated(0.06) benign(0.051) TCGA-DU-5855-01 5 170883817 170883817 C T FGF18 3'UTR 0.33 TCGA-DU-5855-01 5 171520604 171520604 C T STK10 Missense_Mutation p.A456T 0.14 tolerated(0.42) probably_damaging(0.993) TCGA-DU-5855-01 5 74034187 74034187 A C GFM2 Missense_Mutation p.S426A 0.52 tolerated(0.14) possibly_damaging(0.73) TCGA-DU-5855-01 6 30228186 30228186 C T HCG17 Intron 0.09 TCGA-DU-5855-01 7 107204267 107204267 G C COG5 Silent p.V56V 0.30 TCGA-DU-5855-01 7 131848964 131848964 G A PLXNA4 Silent p.G1479G 0.18 TCGA-DU-5855-01 7 155599004 155599004 C T SHH Missense_Mutation p.C183Y 0.22 deleterious(0) probably_damaging(0.988) TCGA-DU-5855-01 7 73245693 73245693 C T CLDN4 Silent p.C54C 0.07 TCGA-DU-5855-01 7 82579784 82579784 A G PCLO Missense_Mutation p.Y3374H 0.06 unknown(0) TCGA-DU-5855-01 7 97823142 97823142 G A LMTK2 Missense_Mutation p.G1122E 0.43 tolerated(0.07) benign(0.033) TCGA-DU-5855-01 7 99711904 99711904 C - TAF6 Intron 0.34 TCGA-DU-5855-01 8 100396486 100396486 A C VPS13B Missense_Mutation p.I959L 0.04 deleterious(0.04) benign(0.001) TCGA-DU-5855-01 8 144942235 144942235 G A EPPK1 Silent p.F1729F 0.38 TCGA-DU-5855-01 9 113139596 113139596 C A SVEP1 Missense_Mutation p.A3487S 0.31 benign(0.282) TCGA-DU-5855-01 X 135825810 135825810 C A ARHGEF6 Nonsense_Mutation p.E199* 0.06 TCGA-DU-5855-01 X 140969496 140969496 C A MAGEC3 Missense_Mutation p.L275I 0.13 tolerated(0.1) possibly_damaging(0.694) TCGA-DU-5855-01 X 15272893 15272893 G A ASB9 Missense_Mutation p.S83F 0.11 deleterious(0.02) possibly_damaging(0.736) TCGA-DU-5855-01 X 27840125 27840125 C T MAGEB10 Silent p.D234D 0.16 TCGA-DU-5855-01 X 76764102 76764102 G T ATRX Silent p.I2402I 0.04 TCGA-DU-5855-01 X 76909629 76909629 G A ATRX Nonsense_Mutation p.R1426* 0.28 TCGA-DU-5870-01 12 125834002 125834003 AG - TMEM132B Frame_Shift_Del p.G23Dfs*4 0.30 TCGA-DU-5870-01 15 39882077 39882077 G A THBS1 Silent p.L666L 0.19 TCGA-DU-5870-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.40 probably_damaging(1) TCGA-DU-5870-01 19 56369920 56369920 C T NLRP4 Silent p.G387G 0.39 TCGA-DU-5870-01 1 175336428 175336428 C T TNR Missense_Mutation p.V657I 0.16 tolerated(0.21) benign(0.001) TCGA-DU-5870-01 1 18149709 18149709 G A ACTL8 Missense_Mutation p.R69Q 0.55 deleterious(0.01) probably_damaging(0.994) TCGA-DU-5870-01 1 227171727 227171727 G T ADCK3 Intron 0.44 TCGA-DU-5870-01 1 52442779 52442779 A G RAB3B Missense_Mutation p.V4A 0.46 tolerated_low_confidence(1) benign(0.002) TCGA-DU-5870-01 22 45996261 45996261 G A FBLN1 Missense_Mutation p.G683R 0.08 tolerated(0.29) probably_damaging(0.98) TCGA-DU-5870-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-5870-01 3 130720222 130720222 C G ATP2C1 Intron 0.35 TCGA-DU-5870-01 4 100479223 100479223 G A TRMT10A Missense_Mutation p.H111Y 0.33 deleterious(0.01) benign(0.233) TCGA-DU-5870-01 4 22390382 22390382 T C GPR125 Missense_Mutation p.N971S 0.30 tolerated(0.5) benign(0.011) TCGA-DU-5870-01 5 140249978 140249978 T C PCDHA11 Silent p.G430G 0.30 TCGA-DU-5870-01 5 2749842 2749842 G A IRX2 Silent p.Y103Y 0.48 TCGA-DU-5870-01 5 67591097 67591097 A G PIK3R1 Missense_Mutation p.N564D 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-DU-5870-01 5 79616416 79616416 C T SPZ1 Missense_Mutation p.P128S 0.39 deleterious_low_confidence(0.04) benign(0.281) TCGA-DU-5870-01 7 4796757 4796757 C G FOXK1 Missense_Mutation p.R395G 0.31 deleterious(0) probably_damaging(0.994) TCGA-DU-5870-01 9 98775227 98775227 A G ERCC6L2 Silent p.S437S 0.30 TCGA-DU-5871-01 10 91192821 91192821 T C SLC16A12 Nonstop_Mutation p.*517Wext*46 0.30 TCGA-DU-5871-01 11 56345128 56345128 C G OR5M10 Missense_Mutation p.E24Q 0.13 tolerated(1) benign(0.009) TCGA-DU-5871-01 13 20039401 20039401 C T TPTE2 Missense_Mutation p.V224I 0.03 tolerated(0.37) benign(0.002) TCGA-DU-5871-01 14 106667852 106667852 C A IGHV3-20 Missense_Mutation p.G27V 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.492) TCGA-DU-5871-01 14 79933737 79933737 C G NRXN3 Missense_Mutation p.L773V 0.12 deleterious(0.04) unknown(0) TCGA-DU-5871-01 14 93118181 93118181 C T RIN3 Missense_Mutation p.P263S 0.05 tolerated(0.25) unknown(0) TCGA-DU-5871-01 16 17228396 17228396 G A XYLT1 Missense_Mutation p.S654F 0.26 deleterious(0) probably_damaging(0.932) TCGA-DU-5871-01 17 28534827 28534827 C T SLC6A4 Missense_Mutation p.V525M 0.16 deleterious(0.03) benign(0.411) TCGA-DU-5871-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.79 deleterious(0) probably_damaging(0.998) TCGA-DU-5871-01 18 43447537 43447537 T C EPG5 Silent p.V2134V 0.05 TCGA-DU-5871-01 19 15276774 15276774 G C NOTCH3 Missense_Mutation p.L1831V 0.11 tolerated(0.05) probably_damaging(0.989) TCGA-DU-5871-01 19 2933527 2933527 G A ZNF77 Missense_Mutation p.A533V 0.19 deleterious(0.04) benign(0.048) TCGA-DU-5871-01 19 3589856 3589856 C T GIPC3 Missense_Mutation p.R245W 0.16 deleterious(0) benign(0.446) TCGA-DU-5871-01 19 55178179 55178179 C T LILRB4 Silent p.D340D 0.46 TCGA-DU-5871-01 19 578038 578038 G A BSG Missense_Mutation p.S111N 0.55 deleterious(0) probably_damaging(0.998) TCGA-DU-5871-01 1 186105940 186105940 C T HMCN1 Missense_Mutation p.R4485W 0.17 probably_damaging(0.999) TCGA-DU-5871-01 1 45477929 45477929 C T UROD 5'UTR 0.22 TCGA-DU-5871-01 1 67672664 67672664 T C IL23R Missense_Mutation p.W242R 0.20 deleterious(0) probably_damaging(0.934) TCGA-DU-5871-01 20 36694642 36694642 A C RPRD1B Missense_Mutation p.K272T 0.10 tolerated(0.27) benign(0.011) TCGA-DU-5871-01 20 6033166 6033166 C T LRRN4 Missense_Mutation p.E94K 0.23 deleterious(0.01) possibly_damaging(0.755) TCGA-DU-5871-01 20 60897105 60897105 C T LAMA5 Missense_Mutation p.G2156R 0.24 benign(0.036) TCGA-DU-5871-01 21 37518618 37518618 G A CBR3 Silent p.E214E 0.22 TCGA-DU-5871-01 2 173366539 173366539 G A ITGA6 Intron 0.32 TCGA-DU-5871-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.44 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-5871-01 2 238483592 238483592 G T RAB17 3'UTR 0.62 TCGA-DU-5871-01 2 74747092 74747092 G A DQX1 Missense_Mutation p.T522M 0.08 deleterious(0.04) possibly_damaging(0.602) TCGA-DU-5871-01 4 159533494 159533494 A C RXFP1 Silent p.G220G 0.29 TCGA-DU-5871-01 4 90169964 90169964 G A GPRIN3 Missense_Mutation p.T433M 0.14 tolerated(0.27) benign(0.009) TCGA-DU-5871-01 5 101585438 101585438 C T SLCO4C1 Silent p.S508S 0.51 TCGA-DU-5871-01 5 148207421 148207421 C T ADRB2 Missense_Mutation p.R343C 0.11 deleterious(0.05) possibly_damaging(0.847) TCGA-DU-5871-01 7 100064708 100064708 C A TSC22D4 Silent p.R354R 0.27 TCGA-DU-5871-01 8 13947773 13947773 G C SGCZ 3'UTR 0.62 TCGA-DU-5871-01 8 17796415 17796415 A G PCM1 Missense_Mutation p.Q170R 0.10 tolerated(0.16) possibly_damaging(0.854) TCGA-DU-5871-01 8 22173813 22173813 G A PIWIL2 Missense_Mutation p.R755H 0.47 tolerated(0.07) benign(0.035) TCGA-DU-5871-01 9 34556300 34556300 T C CNTFR Missense_Mutation p.K241E 0.30 deleterious(0.01) possibly_damaging(0.768) TCGA-DU-5871-01 X 138850563 138850563 T A ATP11C Missense_Mutation p.L752F 0.26 tolerated(0.17) benign(0.06) TCGA-DU-5871-01 X 152853848 152853848 T A FAM58A Missense_Mutation p.Y239F 0.18 deleterious(0.03) probably_damaging(0.97) TCGA-DU-5871-01 X 63411822 63411822 C T AMER1 Missense_Mutation p.A449T 0.40 deleterious(0.02) benign(0.005) TCGA-DU-5871-01 X 76940443 76940447 TCCAT - ATRX Frame_Shift_Del p.M216* 0.44 TCGA-DU-5872-01 11 55655604 55655604 C T TRIM51 Nonsense_Mutation p.R202* 0.32 TCGA-DU-5872-01 12 132329882 132329882 G T MMP17 Silent p.V364V 0.13 TCGA-DU-5872-01 12 42858963 42858963 A G PRICKLE1 Silent p.C291C 0.40 TCGA-DU-5872-01 17 10419569 10419569 C T MYH1 Missense_Mutation p.E99K 0.04 deleterious(0) probably_damaging(0.926) TCGA-DU-5872-01 17 26961614 26961614 G A KIAA0100 Silent p.G997G 0.39 TCGA-DU-5872-01 17 65341917 65341917 T A PSMD12 Silent p.S284S 0.41 TCGA-DU-5872-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.76 deleterious(0) probably_damaging(1) TCGA-DU-5872-01 18 21425086 21425086 T G LAMA3 Silent p.L1239L 0.44 TCGA-DU-5872-01 1 103380351 103380351 C T COL11A1 Missense_Mutation p.R1278K 0.34 unknown(0) TCGA-DU-5872-01 1 145585437 145585437 C G PIAS3 Missense_Mutation p.H568D 0.48 tolerated_low_confidence(0.19) benign(0.079) TCGA-DU-5872-01 1 19166820 19166820 G T TAS1R2 Nonsense_Mutation p.S598* 0.38 TCGA-DU-5872-01 1 8421423 8421423 A G RERE Missense_Mutation p.I715T 0.39 probably_damaging(0.986) TCGA-DU-5872-01 20 47860448 47860448 C G DDX27 3'UTR 0.64 TCGA-DU-5872-01 22 41648966 41648966 A G RANGAP1 Silent p.P430P 0.56 TCGA-DU-5872-01 2 111423902 111423902 T C BUB1 Missense_Mutation p.K299E 0.32 tolerated(0.19) benign(0.345) TCGA-DU-5872-01 2 128522748 128522748 C G WDR33 Missense_Mutation p.Q158H 0.48 deleterious(0) unknown(0) TCGA-DU-5872-01 2 207814342 207814342 T C CPO Missense_Mutation p.S24P 0.37 tolerated(0.24) benign(0.189) TCGA-DU-5872-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-5872-01 2 234969077 234969077 G A SPP2 Missense_Mutation p.R133H 0.35 tolerated(0.7) benign(0.003) TCGA-DU-5872-01 2 239976491 239976491 G A HDAC4 Silent p.P1009P 0.36 TCGA-DU-5872-01 2 62067511 62067511 C A FAM161A Missense_Mutation p.D210Y 0.38 deleterious(0) probably_damaging(0.986) TCGA-DU-5872-01 3 155200741 155200741 A G PLCH1 Missense_Mutation p.L1033P 0.34 tolerated_low_confidence(0.06) benign(0.012) TCGA-DU-5872-01 3 172631478 172631478 A G SPATA16 Silent p.N520N 0.38 TCGA-DU-5872-01 3 93624931 93624931 T C PROS1 Missense_Mutation p.K135E 0.41 tolerated(1) benign(0.098) TCGA-DU-5872-01 6 57012701 57012701 G A ZNF451 Nonsense_Mutation p.W606* 0.41 TCGA-DU-5872-01 7 151135095 151135095 C T CRYGN Missense_Mutation p.R86Q 0.44 tolerated(0.06) benign(0.354) TCGA-DU-5872-01 7 94057712 94057712 C T COL1A2 Missense_Mutation p.P1212S 0.26 unknown(0) TCGA-DU-5872-01 7 98545941 98545941 C T TRRAP Missense_Mutation p.T1542M 0.28 probably_damaging(0.943) TCGA-DU-5872-01 9 135205145 135205145 T C SETX Missense_Mutation p.I614V 0.45 tolerated(0.07) benign(0.003) TCGA-DU-5872-01 9 77257427 77257427 G C RORB Missense_Mutation p.Q111H 0.24 tolerated(0.1) benign(0.003) TCGA-DU-5872-01 X 133379653 133379653 C T CCDC160 Missense_Mutation p.R275C 0.43 deleterious(0) possibly_damaging(0.835) TCGA-DU-5872-01 X 153688767 153688767 A G PLXNA3 Missense_Mutation p.S82G 0.38 tolerated(0.2) benign(0.041) TCGA-DU-5872-01 X 49957597 49957597 A G AKAP4 Silent p.G589G 0.32 TCGA-DU-5872-01 X 76813106 76813106 T G ATRX Missense_Mutation p.E2172A 0.35 probably_damaging(0.999) TCGA-DU-5874-01 10 134898495 134898495 T C GPR123 5'Flank 0.39 TCGA-DU-5874-01 10 71880314 71880314 C T AIFM2 Silent p.S152S 0.33 TCGA-DU-5874-01 11 1215347 1215347 G A MUC5AC RNA 0.41 TCGA-DU-5874-01 11 43465679 43465682 CAGG ATGGACA TTC17 In_Frame_Ins p.T862_G863delinsNGH 0.11 TCGA-DU-5874-01 12 5603654 5603654 C T NTF3 Silent p.L105L 0.45 TCGA-DU-5874-01 12 56504240 56504240 C T PA2G4 Silent p.L229L 0.45 TCGA-DU-5874-01 12 57912987 57912987 T A DDIT3 Intron 0.51 TCGA-DU-5874-01 13 103053948 103053948 C T FGF14 Silent p.R27R 0.29 TCGA-DU-5874-01 14 20666311 20666311 A T OR11G2 Nonsense_Mutation p.R273* 0.06 TCGA-DU-5874-01 14 23855703 23855703 G A MYH6 Missense_Mutation p.R1594W 0.32 deleterious(0) probably_damaging(0.994) TCGA-DU-5874-01 14 39502455 39502455 G A SEC23A Silent p.S762S 0.05 TCGA-DU-5874-01 14 88938593 88938593 T C PTPN21 Missense_Mutation p.I956V 0.54 tolerated(0.17) benign(0.037) TCGA-DU-5874-01 15 101555560 101555560 T G LRRK1 Missense_Mutation p.I521S 0.47 tolerated(0.36) benign(0.046) TCGA-DU-5874-01 15 25304728 25304728 C G SNORD116-3 3'Flank 0.37 TCGA-DU-5874-01 15 72122614 72122614 T C MYO9A Silent p.P2292P 0.55 TCGA-DU-5874-01 16 2161835 2161835 G A PKD1 Silent p.F1111F 0.20 TCGA-DU-5874-01 16 86546529 86546529 A G FOXF1 Splice_Site p.X327_splice 0.10 TCGA-DU-5874-01 17 55072877 55072877 G A SCPEP1 Missense_Mutation p.E223K 0.08 deleterious(0) benign(0.046) TCGA-DU-5874-01 17 72916252 72916252 C T USH1G Missense_Mutation p.G227S 0.42 tolerated(0.53) benign(0.184) TCGA-DU-5874-01 17 7385399 7385399 G A SLC35G6 Silent p.Q32Q 0.39 TCGA-DU-5874-01 18 9549244 9549244 G A PPP4R1 Silent p.N880N 0.49 TCGA-DU-5874-01 19 681421 681421 G A FSTL3 Silent p.A198A 0.45 TCGA-DU-5874-01 1 156785835 156785835 A G SH2D2A Missense_Mutation p.M29T 0.59 tolerated(0.08) benign(0.043) TCGA-DU-5874-01 1 200880752 200880752 C T C1orf106 Silent p.S377S 0.41 TCGA-DU-5874-01 1 211654762 211654762 C T RD3 5'UTR 0.65 TCGA-DU-5874-01 1 232626742 232626742 G A SIPA1L2 Nonsense_Mutation p.R562* 0.20 TCGA-DU-5874-01 1 247921335 247921335 G A OR1C1 Missense_Mutation p.A125V 0.57 deleterious(0) probably_damaging(0.987) TCGA-DU-5874-01 1 35496240 35496240 T C ZMYM6 Translation_Start_Site p.M1? 0.87 deleterious(0) probably_damaging(0.958) TCGA-DU-5874-01 20 23065004 23065004 C T CD93 Missense_Mutation p.R609Q 0.44 tolerated(0.06) benign(0.22) TCGA-DU-5874-01 20 23545539 23545539 C T CST9L 3'UTR 0.46 TCGA-DU-5874-01 20 32439895 32439895 G A CHMP4B Missense_Mutation p.A166T 0.09 tolerated(0.18) possibly_damaging(0.898) TCGA-DU-5874-01 21 34921914 34921914 A G SON Missense_Mutation p.E126G 0.43 benign(0.403) TCGA-DU-5874-01 22 21348256 21348256 G A LZTR1 Missense_Mutation p.R466Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-DU-5874-01 22 45931164 45931164 C A FBLN1 Missense_Mutation p.P290H 0.35 deleterious(0) probably_damaging(0.988) TCGA-DU-5874-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-5874-01 2 72360210 72360210 C T CYP26B1 Missense_Mutation p.R363H 0.43 deleterious(0) probably_damaging(0.998) TCGA-DU-5874-01 3 128706646 128706646 G T KIAA1257 Missense_Mutation p.D160E 0.47 tolerated(0.07) probably_damaging(0.93) TCGA-DU-5874-01 3 14508027 14508027 G A SLC6A6 Missense_Mutation p.V246I 0.39 deleterious(0) possibly_damaging(0.821) TCGA-DU-5874-01 3 44683423 44683423 G A ZNF197 Silent p.V267V 0.24 TCGA-DU-5874-01 4 47556756 47556756 T C ATP10D Missense_Mutation p.V550A 0.44 tolerated(0.12) possibly_damaging(0.816) TCGA-DU-5874-01 5 1216915 1216915 C - SLC6A19 Frame_Shift_Del p.L344Sfs*12 0.37 TCGA-DU-5874-01 5 133914911 133914911 C T JADE2 Silent p.S759S 0.47 TCGA-DU-5874-01 5 134364859 134364859 G A PITX1 Silent p.A185A 0.25 TCGA-DU-5874-01 5 98207864 98207864 A G CHD1 Missense_Mutation p.I1251T 0.06 tolerated(0.05) benign(0.008) TCGA-DU-5874-01 6 152469200 152469200 C T SYNE1 Missense_Mutation p.R8319Q 0.34 benign(0.002) TCGA-DU-5874-01 6 161966343 161966343 T C PARK2 Intron 0.20 TCGA-DU-5874-01 6 43010826 43010826 C T CUL7 Missense_Mutation p.V1234M 0.35 deleterious(0.02) possibly_damaging(0.749) TCGA-DU-5874-01 7 150324678 150324678 C T GIMAP6 3'UTR 0.33 TCGA-DU-5874-01 7 25266332 25266332 G C NPVF Missense_Mutation p.S151C 0.39 tolerated(0.08) probably_damaging(0.939) TCGA-DU-5874-01 7 5256279 5256279 C T WIPI2 Missense_Mutation p.P156L 0.42 deleterious(0.02) benign(0.097) TCGA-DU-5874-01 7 92825189 92825189 G T HEPACAM2 Missense_Mutation p.F409L 0.41 deleterious(0) probably_damaging(0.993) TCGA-DU-5874-01 8 67923054 67923054 T A PPP1R42 Missense_Mutation p.I150L 0.50 deleterious(0.04) benign(0.037) TCGA-DU-5874-01 8 99962883 99962883 G A OSR2 Splice_Site p.X219_splice 0.38 TCGA-DU-5874-01 9 130885212 130885212 C T PTGES2 Splice_Site p.X296_splice 0.42 TCGA-DU-5874-01 9 2829886 2829886 C T KIAA0020 Missense_Mutation p.R247Q 0.31 deleterious(0.01) benign(0.154) TCGA-DU-5874-01 9 4286155 4286155 G A GLIS3 Missense_Mutation p.L91F 0.39 deleterious(0.01) benign(0.011) TCGA-DU-5874-01 X 11133053 11133053 C A HCCS Missense_Mutation p.P67T 0.43 deleterious(0.02) possibly_damaging(0.802) TCGA-DU-5874-01 X 137793294 137793294 C T FGF13 Intron 0.67 TCGA-DU-5874-01 X 151123361 151123361 C T GABRE Missense_Mutation p.A445T 0.49 tolerated(0.62) benign(0.001) TCGA-DU-5874-01 X 152845601 152845601 C T ATP2B3 Missense_Mutation p.R1170C 0.49 deleterious_low_confidence(0.02) benign(0.339) TCGA-DU-6392-01 10 100183511 100183511 G A HPS1 Missense_Mutation p.R511W 0.35 deleterious(0.01) possibly_damaging(0.761) TCGA-DU-6392-01 10 100202908 100202908 G A HPS1 Silent p.F30F 0.35 TCGA-DU-6392-01 10 100481452 100481452 A G HPSE2 Silent p.I306I 0.27 TCGA-DU-6392-01 10 101124720 101124720 G A CNNM1 Missense_Mutation p.V713M 0.49 tolerated(0.05) benign(0.004) TCGA-DU-6392-01 10 101163503 101163503 G T GOT1 Missense_Mutation p.F257L 0.39 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 10 101180553 101180553 G A GOT1 Missense_Mutation p.T43M 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 10 101373480 101373480 G T SLC25A28 Missense_Mutation p.P165T 0.10 tolerated(0.21) benign(0.004) TCGA-DU-6392-01 10 101489459 101489459 C T COX15 Silent p.G41G 0.49 TCGA-DU-6392-01 10 101560197 101560197 C A ABCC2 Silent p.L362L 0.32 TCGA-DU-6392-01 10 101646233 101646233 C A DNMBP Nonsense_Mutation p.E1148* 0.38 TCGA-DU-6392-01 10 101816817 101816817 G A CPN1 Missense_Mutation p.R322W 0.07 deleterious(0.02) possibly_damaging(0.879) TCGA-DU-6392-01 10 101841303 101841303 C T CPN1 Missense_Mutation p.R27H 0.22 tolerated(0.16) benign(0.007) TCGA-DU-6392-01 10 101911983 101911983 C A ERLIN1 Missense_Mutation p.D318Y 0.34 deleterious_low_confidence(0.01) benign(0.188) TCGA-DU-6392-01 10 101912021 101912021 T C ERLIN1 Missense_Mutation p.N305S 0.08 tolerated(0.56) benign(0) TCGA-DU-6392-01 10 102005616 102005616 G A CWF19L1 Missense_Mutation p.R302C 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 102005653 102005653 C A CWF19L1 Missense_Mutation p.Q289H 0.29 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 10 102054794 102054794 G A PKD2L1 Silent p.A481A 0.40 TCGA-DU-6392-01 10 102056783 102056783 C T PKD2L1 Missense_Mutation p.R380H 0.41 tolerated(0.79) benign(0.005) TCGA-DU-6392-01 10 102242454 102242454 T G WNT8B Missense_Mutation p.F313V 0.17 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 102306288 102306288 G T HIF1AN Nonsense_Mutation p.E282* 0.06 TCGA-DU-6392-01 10 102743539 102743539 C A MRPL43 Missense_Mutation p.D210Y 0.36 deleterious_low_confidence(0) benign(0.189) TCGA-DU-6392-01 10 102746584 102746584 C A MRPL43 Missense_Mutation p.Q129H 0.09 tolerated(0.4) probably_damaging(0.948) TCGA-DU-6392-01 10 102748108 102748108 C A C10orf2 Silent p.A47A 0.13 TCGA-DU-6392-01 10 102763514 102763514 C A LZTS2 Missense_Mutation p.S220Y 0.07 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 10 102783729 102783729 C A PDZD7 Missense_Mutation p.G108V 0.47 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 103292718 103292718 A - BTRC Frame_Shift_Del p.N331Tfs*25 0.08 TCGA-DU-6392-01 10 103345153 103345153 C T POLL Missense_Mutation p.A165T 0.35 tolerated(0.27) benign(0.001) TCGA-DU-6392-01 10 103753315 103753315 G A C10orf76 Nonsense_Mutation p.R419* 0.37 TCGA-DU-6392-01 10 103784949 103784949 C A C10orf76 Missense_Mutation p.K157N 0.38 deleterious(0.01) probably_damaging(0.98) TCGA-DU-6392-01 10 103827248 103827248 C T HPS6 Silent p.L673L 0.37 TCGA-DU-6392-01 10 103867844 103867844 G A LDB1 3'UTR 0.37 TCGA-DU-6392-01 10 103869749 103869749 G A LDB1 Missense_Mutation p.R193W 0.45 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 10 103870645 103870645 C T LDB1 Silent p.E111E 0.36 TCGA-DU-6392-01 10 103899528 103899528 G T PPRC1 Missense_Mutation p.K421N 0.12 tolerated_low_confidence(0.1) benign(0.015) TCGA-DU-6392-01 10 103916958 103916958 C T NOLC1 Silent p.V63V 0.36 TCGA-DU-6392-01 10 103987505 103987505 C T ELOVL3 Missense_Mutation p.A75V 0.41 deleterious(0) probably_damaging(0.921) TCGA-DU-6392-01 10 104120794 104120794 C T GBF1 Nonsense_Mutation p.R469* 0.34 TCGA-DU-6392-01 10 104157744 104157744 C T NFKB2 Missense_Mutation p.P223L 0.35 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 10 104176346 104176346 C T PSD Silent p.R150R 0.31 TCGA-DU-6392-01 10 104184302 104184302 G A CUEDC2 Silent p.D78D 0.37 TCGA-DU-6392-01 10 104386977 104386977 G A SUFU Missense_Mutation p.E448K 0.32 tolerated(0.28) benign(0.051) TCGA-DU-6392-01 10 104414976 104414976 C T TRIM8 Missense_Mutation p.A269V 0.41 tolerated(1) benign(0.001) TCGA-DU-6392-01 10 104416970 104416970 G A TRIM8 Silent p.P505P 0.36 TCGA-DU-6392-01 10 105005847 105005847 G A RPEL1 Missense_Mutation p.D32N 0.32 deleterious(0.01) benign(0.133) TCGA-DU-6392-01 10 105063482 105063482 A G PCGF6 3'UTR 0.45 TCGA-DU-6392-01 10 105086326 105086326 G T PCGF6 Missense_Mutation p.L292I 0.12 tolerated(0.39) benign(0.009) TCGA-DU-6392-01 10 105160228 105160228 C T PDCD11 Silent p.I59I 0.32 TCGA-DU-6392-01 10 105176259 105176259 T C PDCD11 Silent p.C510C 0.11 TCGA-DU-6392-01 10 105185237 105185237 C T PDCD11 Missense_Mutation p.T1087M 0.34 deleterious(0.04) possibly_damaging(0.749) TCGA-DU-6392-01 10 105199624 105199624 C T PDCD11 Missense_Mutation p.R1383C 0.54 deleterious(0.01) benign(0.006) TCGA-DU-6392-01 10 105349997 105349997 G A NEURL1 Silent p.T531T 0.34 TCGA-DU-6392-01 10 105361532 105361532 C T SH3PXD2A 3'UTR 0.32 TCGA-DU-6392-01 10 105361942 105361942 G A SH3PXD2A Silent p.G983G 0.31 TCGA-DU-6392-01 10 105362350 105362350 G A SH3PXD2A Silent p.S847S 0.45 TCGA-DU-6392-01 10 105362637 105362637 G A SH3PXD2A Missense_Mutation p.R752C 0.07 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 105377025 105377025 G A SH3PXD2A Silent p.D255D 0.12 TCGA-DU-6392-01 10 105677256 105677256 C T OBFC1 Missense_Mutation p.D33N 0.44 deleterious(0) probably_damaging(0.931) TCGA-DU-6392-01 10 105765355 105765355 C T SLK Missense_Mutation p.R796C 0.42 deleterious(0) possibly_damaging(0.82) TCGA-DU-6392-01 10 105883608 105883608 C T SFR1 Missense_Mutation p.T91I 0.44 tolerated(0.13) benign(0.038) TCGA-DU-6392-01 10 105891158 105891158 C T WDR96 Missense_Mutation p.A1588T 0.10 tolerated(1) benign(0) TCGA-DU-6392-01 10 105902060 105902060 C T WDR96 Missense_Mutation p.R1417K 0.14 tolerated(1) benign(0.001) TCGA-DU-6392-01 10 105912435 105912435 G A WDR96 Missense_Mutation p.T1197I 0.39 deleterious(0) possibly_damaging(0.771) TCGA-DU-6392-01 10 105974145 105974145 C T WDR96 Silent p.Q152Q 0.40 TCGA-DU-6392-01 10 106074250 106074250 G T ITPRIP Missense_Mutation p.F520L 0.07 tolerated(0.07) possibly_damaging(0.62) TCGA-DU-6392-01 10 106074366 106074366 G A ITPRIP Missense_Mutation p.R482C 0.17 tolerated(0.07) benign(0.035) TCGA-DU-6392-01 10 106118367 106118367 C T CCDC147 Missense_Mutation p.A93V 0.38 tolerated(0.09) benign(0.037) TCGA-DU-6392-01 10 106207489 106207489 G A CCDC147 Missense_Mutation p.V764I 0.56 tolerated(1) benign(0.003) TCGA-DU-6392-01 10 106849576 106849576 G A SORCS3 Missense_Mutation p.E358K 0.32 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 10 106937890 106937890 C T SORCS3 Silent p.D656D 0.38 TCGA-DU-6392-01 10 107016646 107016646 T C SORCS3 Missense_Mutation p.V1136A 0.34 deleterious(0.04) benign(0.047) TCGA-DU-6392-01 10 107023071 107023071 G A SORCS3 Missense_Mutation p.G1203D 0.36 deleterious(0.04) benign(0.06) TCGA-DU-6392-01 10 108337090 108337090 A T SORCS1 Intron 0.09 TCGA-DU-6392-01 10 108337255 108337255 G A SORCS1 Intron 0.34 TCGA-DU-6392-01 10 108357111 108357111 G A SORCS1 Missense_Mutation p.A1088V 0.14 tolerated(0.35) benign(0.294) TCGA-DU-6392-01 10 111629770 111629770 C A XPNPEP1 Missense_Mutation p.D572Y 0.30 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 10 111631574 111631574 C T XPNPEP1 Missense_Mutation p.A500T 0.36 tolerated(0.26) possibly_damaging(0.553) TCGA-DU-6392-01 10 111637817 111637817 C A XPNPEP1 Splice_Site p.X395_splice 0.38 TCGA-DU-6392-01 10 111642355 111642355 C T XPNPEP1 Silent p.E292E 0.36 TCGA-DU-6392-01 10 111872641 111872641 A G ADD3 Missense_Mutation p.N101S 0.06 tolerated(1) benign(0.001) TCGA-DU-6392-01 10 111892062 111892062 G T ADD3 Splice_Site p.X578_splice 0.15 TCGA-DU-6392-01 10 112357911 112357911 A C SMC3 Missense_Mutation p.I711L 0.09 tolerated(0.06) benign(0.326) TCGA-DU-6392-01 10 112359426 112359426 G T SMC3 Missense_Mutation p.Q761H 0.29 tolerated(0.11) benign(0.02) TCGA-DU-6392-01 10 112362340 112362340 G T SMC3 Nonsense_Mutation p.E1072* 0.10 TCGA-DU-6392-01 10 112364052 112364052 C T SMC3 Missense_Mutation p.H1216Y 0.27 deleterious(0.03) benign(0.031) TCGA-DU-6392-01 10 112364120 112364120 G T SMC3 3'UTR 0.61 TCGA-DU-6392-01 10 112641242 112641242 T A PDCD4 Missense_Mutation p.L99M 0.36 tolerated(0.24) benign(0.352) TCGA-DU-6392-01 10 112645010 112645010 G T PDCD4 Splice_Site p.X148_splice 0.35 TCGA-DU-6392-01 10 112647497 112647497 G T PDCD4 Missense_Mutation p.E210D 0.33 tolerated(0.34) benign(0.387) TCGA-DU-6392-01 10 11363273 11363273 C T CELF2 Silent p.Y406Y 0.09 TCGA-DU-6392-01 10 113913297 113913297 C T GPAM 3'UTR 0.32 TCGA-DU-6392-01 10 113932026 113932026 A G GPAM Silent p.Y236Y 0.36 TCGA-DU-6392-01 10 114298078 114298078 C T VTI1A Missense_Mutation p.A139V 0.32 tolerated(0.48) benign(0.118) TCGA-DU-6392-01 10 114575091 114575091 C T VTI1A Silent p.I201I 0.23 TCGA-DU-6392-01 10 114710691 114710691 C A TCF7L2 Missense_Mutation p.S59Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 10 11505270 11505270 T C USP6NL Missense_Mutation p.N570D 0.42 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 115341888 115341888 C T HABP2 Silent p.T364T 0.22 TCGA-DU-6392-01 10 115348893 115348893 C T HABP2 3'UTR 0.29 TCGA-DU-6392-01 10 11535183 11535183 T C USP6NL Silent p.Q160Q 0.41 TCGA-DU-6392-01 10 115372045 115372045 G A NRAP Missense_Mutation p.A1149V 0.43 deleterious(0.03) benign(0.005) TCGA-DU-6392-01 10 115401192 115401192 G A NRAP Missense_Mutation p.R419C 0.25 deleterious(0) possibly_damaging(0.556) TCGA-DU-6392-01 10 115406696 115406696 C T NRAP Missense_Mutation p.E327K 0.31 tolerated(0.33) possibly_damaging(0.487) TCGA-DU-6392-01 10 115529585 115529585 A G PLEKHS1 Missense_Mutation p.S154G 0.11 tolerated(0.39) benign(0.034) TCGA-DU-6392-01 10 115601313 115601313 G A DCLRE1A Missense_Mutation p.A891V 0.41 deleterious(0.02) possibly_damaging(0.589) TCGA-DU-6392-01 10 115639428 115639428 G T NHLRC2 Missense_Mutation p.D295Y 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 115894781 115894781 C A C10orf118 Nonsense_Mutation p.E516* 0.13 TCGA-DU-6392-01 10 115962043 115962043 G A TDRD1 Missense_Mutation p.E228K 0.38 tolerated(0.1) possibly_damaging(0.801) TCGA-DU-6392-01 10 115985936 115985936 C A TDRD1 Missense_Mutation p.L1046M 0.09 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 10 116196050 116196050 T C ABLIM1 Missense_Mutation p.N769S 0.07 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 10 116590682 116590682 G A FAM160B1 Silent p.E39E 0.28 TCGA-DU-6392-01 10 116596000 116596000 C A FAM160B1 Missense_Mutation p.L173I 0.09 deleterious(0.05) possibly_damaging(0.812) TCGA-DU-6392-01 10 116603563 116603563 G A FAM160B1 Missense_Mutation p.A294T 0.15 tolerated(0.21) benign(0.089) TCGA-DU-6392-01 10 117040979 117040979 G T ATRNL1 Nonsense_Mutation p.E739* 0.41 TCGA-DU-6392-01 10 117061554 117061554 G A ATRNL1 Splice_Site p.X940_splice 0.33 TCGA-DU-6392-01 10 117226752 117226752 C T ATRNL1 Silent p.V1162V 0.38 TCGA-DU-6392-01 10 117884797 117884797 A G GFRA1 Silent p.Y235Y 0.17 TCGA-DU-6392-01 10 118100340 118100340 G T CCDC172 Missense_Mutation p.R87M 0.27 deleterious(0) probably_damaging(0.955) TCGA-DU-6392-01 10 118225660 118225660 T C PNLIPRP3 Missense_Mutation p.S303P 0.43 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 10 118321149 118321149 G A PNLIP Splice_Site p.X445_splice 0.10 TCGA-DU-6392-01 10 118359629 118359629 C T PNLIPRP1 Silent p.P295P 0.37 TCGA-DU-6392-01 10 118434331 118434331 C T HSPA12A Silent p.S663S 0.29 TCGA-DU-6392-01 10 118441355 118441355 C T HSPA12A Missense_Mutation p.R290Q 0.37 tolerated(0.17) possibly_damaging(0.476) TCGA-DU-6392-01 10 118451868 118451868 G T HSPA12A Silent p.A219A 0.08 TCGA-DU-6392-01 10 118464710 118464710 C T HSPA12A Missense_Mutation p.G69D 0.42 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 118700088 118700088 G A KIAA1598 Silent p.S249S 0.38 TCGA-DU-6392-01 10 118960677 118960677 A G KCNK18 Silent p.E77E 0.39 TCGA-DU-6392-01 10 119015149 119015149 G A SLC18A2 Silent p.P292P 0.36 TCGA-DU-6392-01 10 119036673 119036673 G A SLC18A2 Missense_Mutation p.A481T 0.33 deleterious(0.04) benign(0.094) TCGA-DU-6392-01 10 119043158 119043158 G A PDZD8 Missense_Mutation p.T1029I 0.08 tolerated(0.21) benign(0.029) TCGA-DU-6392-01 10 119043323 119043323 G A PDZD8 Missense_Mutation p.T974M 0.35 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 10 11908610 11908610 C T PROSER2 Silent p.D73D 0.40 TCGA-DU-6392-01 10 119303166 119303166 C A EMX2 Missense_Mutation p.L130M 0.36 deleterious(0.03) benign(0.23) TCGA-DU-6392-01 10 119305195 119305195 G A EMX2 Silent p.K153K 0.19 TCGA-DU-6392-01 10 119307642 119307642 G T EMX2 Missense_Mutation p.D220Y 0.48 deleterious(0) benign(0.285) TCGA-DU-6392-01 10 11963180 11963180 C T UPF2 3'UTR 0.49 TCGA-DU-6392-01 10 119799881 119799881 C T RAB11FIP2 Silent p.T183T 0.40 TCGA-DU-6392-01 10 120353600 120353600 C T PRLHR 3'UTR 0.33 TCGA-DU-6392-01 10 120450775 120450775 G A CACUL1 Splice_Site p.X342_splice 0.34 TCGA-DU-6392-01 10 120801913 120801913 C T EIF3A Missense_Mutation p.R1040H 0.33 deleterious(0.01) probably_damaging(0.984) TCGA-DU-6392-01 10 120802156 120802156 C T EIF3A Missense_Mutation p.R959Q 0.41 deleterious(0.01) probably_damaging(0.974) TCGA-DU-6392-01 10 120818756 120818756 C T EIF3A Missense_Mutation p.A533T 0.27 tolerated(0.36) unknown(0) TCGA-DU-6392-01 10 120819204 120819204 C T EIF3A Silent p.E451E 0.37 TCGA-DU-6392-01 10 120830555 120830555 C T EIF3A Missense_Mutation p.R195H 0.42 deleterious(0.02) unknown(0) TCGA-DU-6392-01 10 120832515 120832515 C T EIF3A Missense_Mutation p.R143K 0.45 deleterious(0) unknown(0) TCGA-DU-6392-01 10 121182770 121182770 C A GRK5 Silent p.A144A 0.48 TCGA-DU-6392-01 10 121184565 121184565 T C GRK5 Silent p.F167F 0.09 TCGA-DU-6392-01 10 121212232 121212232 C T GRK5 Missense_Mutation p.T485I 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-DU-6392-01 10 121214505 121214505 C A GRK5 Missense_Mutation p.P567T 0.08 tolerated(0.22) benign(0) TCGA-DU-6392-01 10 121214568 121214568 G A GRK5 Missense_Mutation p.G588R 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-DU-6392-01 10 121259697 121259697 G A RGS10 Silent p.T158T 0.43 TCGA-DU-6392-01 10 121335109 121335109 C T TIAL1 3'UTR 0.42 TCGA-DU-6392-01 10 121337189 121337189 T C TIAL1 Missense_Mutation p.T223A 0.42 deleterious(0) benign(0.414) TCGA-DU-6392-01 10 121582687 121582687 C T INPP5F Missense_Mutation p.R713C 0.37 tolerated(0.08) benign(0.335) TCGA-DU-6392-01 10 121587087 121587087 G A INPP5F Missense_Mutation p.S1065N 0.35 deleterious_low_confidence(0) benign(0.018) TCGA-DU-6392-01 10 121590930 121590930 A T MCMBP 3'UTR 0.38 TCGA-DU-6392-01 10 12160831 12160831 A G DHTKD1 Missense_Mutation p.D829G 0.14 deleterious(0.02) benign(0.097) TCGA-DU-6392-01 10 12197318 12197318 C T SEC61A2 Intron 0.41 TCGA-DU-6392-01 10 122619736 122619736 C A WDR11 Missense_Mutation p.S156R 0.32 deleterious(0) possibly_damaging(0.84) TCGA-DU-6392-01 10 123310926 123310926 C T FGFR2 Missense_Mutation p.A168T 0.11 deleterious(0.04) possibly_damaging(0.516) TCGA-DU-6392-01 10 123503324 123503324 C T ATE1 Silent p.K476K 0.41 TCGA-DU-6392-01 10 123658440 123658440 C T ATE1 Silent p.S286S 0.49 TCGA-DU-6392-01 10 123658451 123658451 C A ATE1 Nonsense_Mutation p.E283* 0.15 TCGA-DU-6392-01 10 123781513 123781513 G T TACC2 Missense_Mutation p.S6I 0.32 benign(0.017) TCGA-DU-6392-01 10 123843937 123843937 C A TACC2 Missense_Mutation p.A641D 0.23 benign(0.164) TCGA-DU-6392-01 10 123846233 123846233 A C TACC2 Silent p.P1406P 0.10 TCGA-DU-6392-01 10 123846534 123846534 C T TACC2 Missense_Mutation p.R1507W 0.18 benign(0.28) TCGA-DU-6392-01 10 123846833 123846833 C T TACC2 Silent p.C1606C 0.35 TCGA-DU-6392-01 10 123970727 123970727 G A TACC2 Missense_Mutation p.V2263I 0.47 possibly_damaging(0.885) TCGA-DU-6392-01 10 124092006 124092006 G T BTBD16 Missense_Mutation p.R381I 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 124189225 124189225 G A PLEKHA1 Missense_Mutation p.R329H 0.47 tolerated(0.49) benign(0.002) TCGA-DU-6392-01 10 124336138 124336138 G A DMBT1 Silent p.V169V 0.37 TCGA-DU-6392-01 10 124337336 124337336 C A DMBT1 Missense_Mutation p.P206H 0.12 deleterious(0.04) possibly_damaging(0.809) TCGA-DU-6392-01 10 124457660 124457660 G A C10orf120 Silent p.G199G 0.41 TCGA-DU-6392-01 10 124608857 124608857 G T FAM24B Missense_Mutation p.S64Y 0.50 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 10 124609946 124609946 G A FAM24B Missense_Mutation p.A29V 0.43 deleterious(0.01) probably_damaging(0.935) TCGA-DU-6392-01 10 124697271 124697271 G A C10orf88 Silent p.T351T 0.38 TCGA-DU-6392-01 10 124909419 124909419 G A HMX2 Missense_Mutation p.R201H 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 124922226 124922226 A G BUB3 Missense_Mutation p.S285G 0.14 deleterious(0.01) benign(0.394) TCGA-DU-6392-01 10 125521526 125521526 C T CPXM2 Missense_Mutation p.V547M 0.40 tolerated(0.25) probably_damaging(0.975) TCGA-DU-6392-01 10 125528127 125528127 G A CPXM2 Missense_Mutation p.A405V 0.13 deleterious(0.03) benign(0.084) TCGA-DU-6392-01 10 12595236 12595236 C T CAMK1D Silent p.S35S 0.37 TCGA-DU-6392-01 10 126094005 126094005 C A OAT Missense_Mutation p.E216D 0.12 deleterious(0.03) benign(0.039) TCGA-DU-6392-01 10 126311927 126311927 C T FAM53B Missense_Mutation p.E385K 0.37 tolerated(0.38) benign(0.084) TCGA-DU-6392-01 10 126370557 126370557 G A FAM53B Silent p.N175N 0.13 TCGA-DU-6392-01 10 126518046 126518046 G T FAM175B Missense_Mutation p.Q221H 0.10 deleterious(0) possibly_damaging(0.671) TCGA-DU-6392-01 10 126523241 126523241 G T FAM175B Nonsense_Mutation p.E317* 0.08 TCGA-DU-6392-01 10 126631286 126631286 G T ZRANB1 Missense_Mutation p.R75M 0.39 tolerated(0.11) probably_damaging(0.942) TCGA-DU-6392-01 10 126662837 126662837 T C ZRANB1 Missense_Mutation p.Y433H 0.35 tolerated(0.25) benign(0.391) TCGA-DU-6392-01 10 126694391 126694391 G A CTBP2 Intron 0.42 TCGA-DU-6392-01 10 127477544 127477544 C T UROS Missense_Mutation p.A231T 0.39 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 10 127548312 127548312 C A DHX32 Missense_Mutation p.V237L 0.06 tolerated(0.3) benign(0.009) TCGA-DU-6392-01 10 127569507 127569507 C T DHX32 5'UTR 0.41 TCGA-DU-6392-01 10 127797171 127797171 G A ADAM12 Silent p.H247H 0.32 TCGA-DU-6392-01 10 12803078 12803078 A G CAMK1D Missense_Mutation p.D144G 0.26 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 10 128118356 128118356 C A C10orf90 Missense_Mutation p.R654I 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 128147787 128147787 C T C10orf90 Splice_Site p.X574_splice 0.12 TCGA-DU-6392-01 10 128209933 128209933 C T C10orf90 5'UTR 0.33 TCGA-DU-6392-01 10 12867689 12867689 T A CAMK1D Missense_Mutation p.C347S 0.38 tolerated(0.83) benign(0.027) TCGA-DU-6392-01 10 128850978 128850978 C T DOCK1 Silent p.D724D 0.44 TCGA-DU-6392-01 10 129245737 129245737 T C DOCK1 Silent p.D1810D 0.33 TCGA-DU-6392-01 10 12940345 12940345 A G CCDC3 3'UTR 0.31 TCGA-DU-6392-01 10 129676405 129676405 A G CLRN3 3'UTR 0.44 TCGA-DU-6392-01 10 129900968 129900968 C A MKI67 Missense_Mutation p.V3046F 0.07 tolerated(0.11) possibly_damaging(0.643) TCGA-DU-6392-01 10 129901141 129901141 T C MKI67 Missense_Mutation p.N2988S 0.12 tolerated(0.89) benign(0.068) TCGA-DU-6392-01 10 129901433 129901433 G A MKI67 Missense_Mutation p.R2891W 0.44 deleterious(0.01) benign(0.002) TCGA-DU-6392-01 10 129903287 129903287 C A MKI67 Nonsense_Mutation p.G2273* 0.39 TCGA-DU-6392-01 10 129904331 129904331 C T MKI67 Missense_Mutation p.V1925M 0.35 deleterious(0.04) benign(0.356) TCGA-DU-6392-01 10 129906300 129906300 T C MKI67 Silent p.R1268R 0.10 TCGA-DU-6392-01 10 129906896 129906896 C T MKI67 Missense_Mutation p.E1070K 0.40 deleterious(0.01) probably_damaging(0.91) TCGA-DU-6392-01 10 129908731 129908731 G A MKI67 Missense_Mutation p.A776V 0.31 tolerated(0.25) benign(0.024) TCGA-DU-6392-01 10 129910032 129910032 A G MKI67 Missense_Mutation p.S713P 0.42 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 10 131506229 131506229 C T MGMT Silent p.L97L 0.43 TCGA-DU-6392-01 10 13214455 13214455 C T MCM10 Silent p.S143S 0.07 TCGA-DU-6392-01 10 13228229 13228229 C A MCM10 Silent p.T389T 0.08 TCGA-DU-6392-01 10 13230881 13230881 C T MCM10 Missense_Mutation p.R407C 0.32 tolerated(0.15) possibly_damaging(0.601) TCGA-DU-6392-01 10 13246221 13246221 C T MCM10 Silent p.C786C 0.26 TCGA-DU-6392-01 10 13276280 13276280 G A UCMA 5'UTR 0.43 TCGA-DU-6392-01 10 132891569 132891569 C A TCERG1L Missense_Mutation p.K539N 0.38 deleterious(0.02) probably_damaging(0.93) TCGA-DU-6392-01 10 13361060 13361060 T G SEPHS1 3'UTR 0.27 TCGA-DU-6392-01 10 133761112 133761112 G A PPP2R2D Missense_Mutation p.S269N 0.08 deleterious(0) benign(0.206) TCGA-DU-6392-01 10 133769401 133769401 C T PPP2R2D Silent p.P401P 0.26 TCGA-DU-6392-01 10 13386999 13386999 G A SEPHS1 5'UTR 0.32 TCGA-DU-6392-01 10 133954008 133954008 C T JAKMIP3 Silent p.S466S 0.39 TCGA-DU-6392-01 10 134012358 134012358 G A DPYSL4 Missense_Mutation p.E232K 0.32 deleterious(0) possibly_damaging(0.899) TCGA-DU-6392-01 10 134013930 134013930 C T DPYSL4 Silent p.N294N 0.40 TCGA-DU-6392-01 10 134015524 134015524 C A DPYSL4 Nonsense_Mutation p.Y395* 0.08 TCGA-DU-6392-01 10 134015567 134015567 G A DPYSL4 Missense_Mutation p.V410I 0.24 deleterious(0.03) benign(0.019) TCGA-DU-6392-01 10 134219521 134219521 C T PWWP2B Missense_Mutation p.A506V 0.42 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 10 134743096 134743096 C T TTC40 Intron 0.38 TCGA-DU-6392-01 10 135015155 135015155 A G KNDC1 Missense_Mutation p.Q1047R 0.34 tolerated(0.11) benign(0.003) TCGA-DU-6392-01 10 135053709 135053709 G A VENTX Missense_Mutation p.A226T 0.44 tolerated(0.42) benign(0.001) TCGA-DU-6392-01 10 135085933 135085933 C T ADAM8 Missense_Mutation p.V288I 0.44 deleterious(0.01) possibly_damaging(0.652) TCGA-DU-6392-01 10 135102452 135102452 G A TUBGCP2 Missense_Mutation p.T506M 0.26 deleterious(0) probably_damaging(0.979) TCGA-DU-6392-01 10 135125423 135125423 C T ZNF511 Intron 0.27 TCGA-DU-6392-01 10 135126182 135126182 C T ZNF511 Intron 0.40 TCGA-DU-6392-01 10 135176413 135176413 C T ECHS1 Missense_Mutation p.A278T 0.33 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 10 135204907 135204907 G A PAOX Missense_Mutation p.R495H 0.37 deleterious(0.04) probably_damaging(1) TCGA-DU-6392-01 10 135438839 135438839 G T FRG2B Missense_Mutation p.P201T 0.29 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 10 13701455 13701455 G A FRMD4A Missense_Mutation p.A645V 0.35 tolerated_low_confidence(0.16) benign(0.026) TCGA-DU-6392-01 10 14563963 14563963 G A FAM107B Nonsense_Mutation p.R237* 0.32 TCGA-DU-6392-01 10 14909123 14909123 G T HSPA14 Missense_Mutation p.Q345H 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 15170447 15170447 G A NMT2 Nonsense_Mutation p.R301* 0.10 TCGA-DU-6392-01 10 15256494 15256494 G T FAM171A1 Missense_Mutation p.L365M 0.37 deleterious(0) probably_damaging(0.933) TCGA-DU-6392-01 10 15296864 15296864 G A FAM171A1 Missense_Mutation p.P145S 0.45 deleterious(0) possibly_damaging(0.615) TCGA-DU-6392-01 10 15726009 15726009 G A ITGA8 Missense_Mutation p.R188W 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 15726032 15726032 G A ITGA8 Missense_Mutation p.A180V 0.47 tolerated(0.16) possibly_damaging(0.611) TCGA-DU-6392-01 10 15902255 15902255 G A FAM188A Missense_Mutation p.T15I 0.31 tolerated(0.18) benign(0.04) TCGA-DU-6392-01 10 16866908 16866908 G A CUBN 3'UTR 0.27 TCGA-DU-6392-01 10 16942837 16942837 C T CUBN Missense_Mutation p.D2733N 0.29 tolerated(0.52) benign(0.012) TCGA-DU-6392-01 10 17083137 17083137 C T CUBN Silent p.Q1304Q 0.10 TCGA-DU-6392-01 10 17089500 17089500 C T CUBN Missense_Mutation p.R1081K 0.42 tolerated(0.66) benign(0.001) TCGA-DU-6392-01 10 17107602 17107602 C A CUBN Missense_Mutation p.S1015I 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 17147575 17147575 C A CUBN Splice_Site p.X371_splice 0.33 TCGA-DU-6392-01 10 17151674 17151674 C T CUBN Missense_Mutation p.G359D 0.27 deleterious(0) possibly_damaging(0.65) TCGA-DU-6392-01 10 17164793 17164793 C T CUBN Splice_Site p.X198_splice 0.58 TCGA-DU-6392-01 10 17277273 17277273 A G VIM Missense_Mutation p.M372V 0.30 tolerated(0.06) benign(0.11) TCGA-DU-6392-01 10 17277379 17277379 A T VIM Missense_Mutation p.E407V 0.17 deleterious(0) probably_damaging(0.909) TCGA-DU-6392-01 10 18807845 18807845 G T CACNB2 Missense_Mutation p.D298Y 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 18828539 18828539 G T CACNB2 Missense_Mutation p.K623N 0.41 tolerated_low_confidence(0.14) benign(0.358) TCGA-DU-6392-01 10 18964224 18964224 G T ARL5B 3'UTR 0.34 TCGA-DU-6392-01 10 21074810 21074810 C A NEBL Missense_Mutation p.D971Y 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 21101818 21101818 C T NEBL Missense_Mutation p.V800I 0.12 tolerated(0.07) benign(0.034) TCGA-DU-6392-01 10 21804047 21804047 T C SKIDA1 Missense_Mutation p.K902R 0.15 tolerated(0.18) unknown(0) TCGA-DU-6392-01 10 21804300 21804300 C A SKIDA1 Nonsense_Mutation p.G818* 0.08 TCGA-DU-6392-01 10 22002827 22002827 C T MLLT10 Missense_Mutation p.A609V 0.09 deleterious(0.04) benign(0.116) TCGA-DU-6392-01 10 22830767 22830767 C T PIP4K2A Silent p.P334P 0.39 TCGA-DU-6392-01 10 22839649 22839649 T G PIP4K2A Missense_Mutation p.K244T 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-DU-6392-01 10 23408358 23408358 G A MSRB2 Missense_Mutation p.R141H 0.43 deleterious(0) benign(0.074) TCGA-DU-6392-01 10 23482768 23482768 G T PTF1A Missense_Mutation p.R307I 0.39 deleterious(0) unknown(0) TCGA-DU-6392-01 10 24762394 24762394 C A KIAA1217 Missense_Mutation p.P362T 0.39 tolerated(0.05) probably_damaging(0.999) TCGA-DU-6392-01 10 24790356 24790356 C T KIAA1217 Missense_Mutation p.T628M 0.41 deleterious(0.05) benign(0.374) TCGA-DU-6392-01 10 24809090 24809090 C A KIAA1217 Missense_Mutation p.S739Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 24822049 24822049 T A KIAA1217 Nonsense_Mutation p.Y1099* 0.13 TCGA-DU-6392-01 10 24833163 24833163 C T KIAA1217 Missense_Mutation p.T1655I 0.34 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 24835130 24835130 C T KIAA1217 Silent p.S1903S 0.56 TCGA-DU-6392-01 10 24886401 24886401 C A ARHGAP21 Missense_Mutation p.E1103D 0.12 tolerated(0.36) benign(0.059) TCGA-DU-6392-01 10 24908579 24908579 G T ARHGAP21 Missense_Mutation p.Q749K 0.11 tolerated(0.11) possibly_damaging(0.889) TCGA-DU-6392-01 10 25312394 25312394 G A THNSL1 Missense_Mutation p.C81Y 0.29 tolerated(1) possibly_damaging(0.73) TCGA-DU-6392-01 10 25314415 25314415 T C THNSL1 3'UTR 0.48 TCGA-DU-6392-01 10 25464695 25464695 G A GPR158 Missense_Mutation p.A116T 0.41 tolerated(0.52) benign(0.206) TCGA-DU-6392-01 10 25510037 25510037 G T GPR158 Missense_Mutation p.S320I 0.10 deleterious(0.01) benign(0.082) TCGA-DU-6392-01 10 25877997 25877997 G A GPR158 Silent p.S605S 0.18 TCGA-DU-6392-01 10 25878043 25878043 C T GPR158 Missense_Mutation p.L621F 0.27 deleterious(0) possibly_damaging(0.897) TCGA-DU-6392-01 10 25883177 25883177 G A GPR158 Intron 0.32 TCGA-DU-6392-01 10 26443734 26443734 G A MYO3A Silent p.T925T 0.39 TCGA-DU-6392-01 10 26825126 26825126 G A APBB1IP Missense_Mutation p.V342I 0.39 deleterious(0) probably_damaging(0.911) TCGA-DU-6392-01 10 26880238 26880238 G A LINC00264 Splice_Site 0.36 TCGA-DU-6392-01 10 27431370 27431370 G A YME1L1 Nonsense_Mutation p.R183* 0.44 TCGA-DU-6392-01 10 27459940 27459940 G A MASTL Silent p.S684S 0.41 TCGA-DU-6392-01 10 27459997 27459997 C A MASTL Silent p.S703S 0.10 TCGA-DU-6392-01 10 27536594 27536594 C A RP11-85G18.6 Intron 0.19 TCGA-DU-6392-01 10 27822776 27822776 C T RAB18 Silent p.I124I 0.44 TCGA-DU-6392-01 10 27964176 27964176 C T MKX Silent p.P347P 0.39 TCGA-DU-6392-01 10 28151500 28151500 T C ARMC4 Missense_Mutation p.N888D 0.43 tolerated(0.11) possibly_damaging(0.557) TCGA-DU-6392-01 10 28196637 28196637 C T ARMC4 Silent p.K855K 0.35 TCGA-DU-6392-01 10 28233780 28233780 T C ARMC4 Missense_Mutation p.I500V 0.10 tolerated(0.26) possibly_damaging(0.638) TCGA-DU-6392-01 10 28260120 28260120 C A ARMC4 Missense_Mutation p.K353N 0.32 deleterious(0.02) possibly_damaging(0.603) TCGA-DU-6392-01 10 28348654 28348654 C A MPP7 Missense_Mutation p.R408I 0.10 deleterious(0) probably_damaging(0.931) TCGA-DU-6392-01 10 28358723 28358723 C T MPP7 Silent p.Q394Q 0.38 TCGA-DU-6392-01 10 28872387 28872387 T C WAC Missense_Mutation p.S112P 0.34 deleterious(0.05) probably_damaging(0.986) TCGA-DU-6392-01 10 28899640 28899640 C T WAC Missense_Mutation p.A393V 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-DU-6392-01 10 29580842 29580842 G T LYZL1 Missense_Mutation p.G62C 0.40 tolerated(0.12) benign(0.009) TCGA-DU-6392-01 10 29599062 29599062 G T LYZL1 Missense_Mutation p.D154Y 0.34 deleterious(0) probably_damaging(0.973) TCGA-DU-6392-01 10 29770598 29770598 G A SVIL Missense_Mutation p.T1672M 0.28 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 10 29801769 29801769 G A SVIL Silent p.S1137S 0.44 TCGA-DU-6392-01 10 29811375 29811375 A G SVIL Missense_Mutation p.L1118P 0.40 deleterious(0.04) benign(0.221) TCGA-DU-6392-01 10 29818634 29818634 G A SVIL Missense_Mutation p.T749I 0.17 deleterious(0) probably_damaging(0.91) TCGA-DU-6392-01 10 30316836 30316836 G T KIAA1462 Silent p.A747A 0.12 TCGA-DU-6392-01 10 30611540 30611540 G T MTPAP Silent p.A333A 0.23 TCGA-DU-6392-01 10 30739353 30739353 C T MAP3K8 Missense_Mutation p.P224L 0.41 deleterious(0) probably_damaging(0.941) TCGA-DU-6392-01 10 30747036 30747036 C T MAP3K8 Silent p.I299I 0.26 TCGA-DU-6392-01 10 31137485 31137485 G A ZNF438 Nonsense_Mutation p.R617* 0.23 TCGA-DU-6392-01 10 31791292 31791292 C T ZEB1 Silent p.C113C 0.31 TCGA-DU-6392-01 10 31810705 31810705 C T ZEB1 Silent p.I815I 0.43 TCGA-DU-6392-01 10 3190292 3190292 C T PITRM1 Intron 0.38 TCGA-DU-6392-01 10 32197261 32197261 G A ARHGAP12 Missense_Mutation p.R175C 0.38 tolerated(0.06) possibly_damaging(0.677) TCGA-DU-6392-01 10 32306236 32306236 G A KIF5B Nonsense_Mutation p.R866* 0.10 TCGA-DU-6392-01 10 33134814 33134814 G T C10ORF68 Missense_Mutation p.K420N 0.32 tolerated(0.11) probably_damaging(0.978) TCGA-DU-6392-01 10 33135326 33135326 A G C10ORF68 Silent p.K452K 0.44 TCGA-DU-6392-01 10 33137576 33137576 C A C10ORF68 Silent p.I518I 0.09 TCGA-DU-6392-01 10 33199304 33199304 T C ITGB1 Missense_Mutation p.T671A 0.46 tolerated(0.78) benign(0.103) TCGA-DU-6392-01 10 33200467 33200467 C T ITGB1 Missense_Mutation p.E614K 0.30 tolerated(0.21) benign(0.013) TCGA-DU-6392-01 10 33218771 33218771 A G ITGB1 Silent p.L119L 0.12 TCGA-DU-6392-01 10 33469177 33469177 G T NRP1 Missense_Mutation p.L867M 0.11 tolerated(0.05) probably_damaging(0.998) TCGA-DU-6392-01 10 33475278 33475278 C A NRP1 Missense_Mutation p.G734V 0.45 tolerated(0.2) probably_damaging(1) TCGA-DU-6392-01 10 33481304 33481304 G T NRP1 Missense_Mutation p.S656Y 0.32 tolerated(0.1) probably_damaging(0.961) TCGA-DU-6392-01 10 34666916 34666916 C A PARD3 Missense_Mutation p.K506N 0.45 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 10 34688290 34688290 G A PARD3 Silent p.I286I 0.08 TCGA-DU-6392-01 10 35324208 35324208 G A CUL2 Silent p.Y317Y 0.09 TCGA-DU-6392-01 10 35327937 35327937 A C CUL2 Missense_Mutation p.I282S 0.31 tolerated(0.63) benign(0.068) TCGA-DU-6392-01 10 35333549 35333549 T G CUL2 Missense_Mutation p.K239T 0.37 tolerated(0.36) benign(0.415) TCGA-DU-6392-01 10 35819081 35819081 A G CCNY Silent p.K163K 0.38 TCGA-DU-6392-01 10 35896773 35896773 G A GJD4 Missense_Mutation p.C111Y 0.32 tolerated(0.55) benign(0) TCGA-DU-6392-01 10 35929971 35929971 C T FZD8 Nonsense_Mutation p.W129* 0.47 TCGA-DU-6392-01 10 373112 373112 C T DIP2C Missense_Mutation p.R1253Q 0.34 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 10 3821778 3821778 A C KLF6 Missense_Mutation p.F269V 0.36 deleterious(0) probably_damaging(0.966) TCGA-DU-6392-01 10 38241496 38241496 T C ZNF25 Silent p.G310G 0.26 TCGA-DU-6392-01 10 38406524 38406524 A G ZNF37A Missense_Mutation p.N149D 0.42 tolerated(0.21) benign(0) TCGA-DU-6392-01 10 38406660 38406660 C T ZNF37A Missense_Mutation p.T194I 0.34 tolerated(0.66) benign(0.001) TCGA-DU-6392-01 10 429983 429983 C T DIP2C Silent p.A620A 0.10 TCGA-DU-6392-01 10 43606695 43606695 G A RET Missense_Mutation p.G435D 0.35 deleterious(0.05) probably_damaging(0.999) TCGA-DU-6392-01 10 43615023 43615023 C T RET Missense_Mutation p.R813W 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 43655966 43655966 G A CSGALNACT2 Silent p.K301K 0.41 TCGA-DU-6392-01 10 43691532 43691532 C T RASGEF1A 3'Flank 0.40 TCGA-DU-6392-01 10 44139911 44139911 C T ZNF32 Missense_Mutation p.E137K 0.36 deleterious(0.02) possibly_damaging(0.463) TCGA-DU-6392-01 10 45473040 45473040 C A C10orf10 Missense_Mutation p.A147S 0.44 tolerated(0.87) possibly_damaging(0.866) TCGA-DU-6392-01 10 45878107 45878107 G A ALOX5 Silent p.E109E 0.29 TCGA-DU-6392-01 10 45956831 45956831 T C MARCH8 Missense_Mutation p.S91G 0.11 tolerated(0.21) benign(0.005) TCGA-DU-6392-01 10 46224421 46224421 C T FAM21C Missense_Mutation p.H80Y 0.35 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 10 465045 465045 C T DIP2C Silent p.A233A 0.27 TCGA-DU-6392-01 10 46963905 46963905 G T SYT15 Missense_Mutation p.A353D 0.19 deleterious(0.02) probably_damaging(0.962) TCGA-DU-6392-01 10 46968587 46968587 C T SYT15 Missense_Mutation p.G117S 0.17 tolerated(1) benign(0.002) TCGA-DU-6392-01 10 46999062 46999062 C T GPRIN2 Missense_Mutation p.A61V 0.14 tolerated(0.54) benign(0.002) TCGA-DU-6392-01 10 46999131 46999131 C A GPRIN2 Missense_Mutation p.P84H 0.15 deleterious(0) possibly_damaging(0.847) TCGA-DU-6392-01 10 46999227 46999227 C T GPRIN2 Missense_Mutation p.A116V 0.17 tolerated(0.17) benign(0.085) TCGA-DU-6392-01 10 47086853 47086853 C A NPY4R Missense_Mutation p.L24M 0.13 tolerated(0.15) benign(0.235) TCGA-DU-6392-01 10 48388602 48388602 G A RBP3 Missense_Mutation p.A759V 0.37 tolerated(0.12) possibly_damaging(0.787) TCGA-DU-6392-01 10 48389680 48389680 C T RBP3 Missense_Mutation p.A400T 0.28 tolerated(0.51) benign(0.011) TCGA-DU-6392-01 10 48390151 48390151 C T RBP3 Missense_Mutation p.A243T 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-DU-6392-01 10 48429011 48429011 G A GDF10 Missense_Mutation p.A292V 0.33 tolerated(1) benign(0.032) TCGA-DU-6392-01 10 486833 486833 C T DIP2C Silent p.S124S 0.40 TCGA-DU-6392-01 10 486879 486879 G A DIP2C Missense_Mutation p.A109V 0.28 tolerated(0.15) benign(0.114) TCGA-DU-6392-01 10 4877927 4877927 C T AKR1E2 Nonsense_Mutation p.R129* 0.49 TCGA-DU-6392-01 10 4884652 4884652 A G AKR1E2 Missense_Mutation p.I265V 0.40 deleterious(0.02) possibly_damaging(0.77) TCGA-DU-6392-01 10 49420106 49420106 G A FRMPD2 Missense_Mutation p.A501V 0.35 tolerated(0.06) probably_damaging(0.987) TCGA-DU-6392-01 10 49643001 49643001 G A MAPK8 Missense_Mutation p.D405N 0.35 deleterious_low_confidence(0) benign(0.121) TCGA-DU-6392-01 10 49643087 49643087 G A MAPK8 3'UTR 0.35 TCGA-DU-6392-01 10 49662148 49662148 C T ARHGAP22 Silent p.L299L 0.09 TCGA-DU-6392-01 10 50121843 50121843 G A LRRC18 Missense_Mutation p.L120F 0.33 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 10 50122110 50122110 G A LRRC18 Missense_Mutation p.R31C 0.36 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 10 50311906 50311906 C A VSTM4 Intron 0.31 TCGA-DU-6392-01 10 50315727 50315727 C T VSTM4 Silent p.G123G 0.23 TCGA-DU-6392-01 10 5043827 5043827 G A AKR1C2 Missense_Mutation p.A44V 0.38 tolerated(1) benign(0.055) TCGA-DU-6392-01 10 50667171 50667171 G A ERCC6 Missense_Mutation p.A1391V 0.12 deleterious(0.01) probably_damaging(0.96) TCGA-DU-6392-01 10 50828611 50828611 C T CHAT Missense_Mutation p.A217V 0.38 tolerated(0.11) possibly_damaging(0.576) TCGA-DU-6392-01 10 50860015 50860015 G A CHAT Missense_Mutation p.A533T 0.18 deleterious(0.01) probably_damaging(0.935) TCGA-DU-6392-01 10 51585345 51585345 A C NCOA4 Missense_Mutation p.I498L 0.27 tolerated(0.07) benign(0.17) TCGA-DU-6392-01 10 51807990 51807990 G A RP11-324H6.5 RNA 0.38 TCGA-DU-6392-01 10 52008258 52008258 A G ASAH2 Missense_Mutation p.I38T 0.09 tolerated_low_confidence(0.35) benign(0) TCGA-DU-6392-01 10 5204849 5204849 G A AKR1CL1 Silent p.T76T 0.12 TCGA-DU-6392-01 10 5238802 5238802 G A AKR1C4 5'UTR 0.35 TCGA-DU-6392-01 10 52566559 52566559 G T A1CF Missense_Mutation p.A572E 0.37 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-DU-6392-01 10 52601697 52601697 C T A1CF Missense_Mutation p.G105E 0.31 deleterious(0.01) probably_damaging(0.97) TCGA-DU-6392-01 10 54031201 54031201 G A PRKG1 Missense_Mutation p.R422H 0.14 tolerated(0.35) benign(0.04) TCGA-DU-6392-01 10 54076370 54076370 G A DKK1 Missense_Mutation p.A202T 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 5493871 5493871 G A NET1 Missense_Mutation p.A112T 0.38 tolerated(0.05) probably_damaging(0.999) TCGA-DU-6392-01 10 5541121 5541121 C T CALML5 Missense_Mutation p.G94D 0.25 deleterious(0.03) possibly_damaging(0.564) TCGA-DU-6392-01 10 5567216 5567216 C T CALML3 Silent p.I56I 0.29 TCGA-DU-6392-01 10 56138598 56138598 C T PCDH15 Missense_Mutation p.D88N 0.08 deleterious(0) probably_damaging(0.979) TCGA-DU-6392-01 10 5693263 5693263 C T ASB13 Missense_Mutation p.E99K 0.40 tolerated(0.07) possibly_damaging(0.56) TCGA-DU-6392-01 10 5762885 5762885 G A FAM208B Missense_Mutation p.C33Y 0.13 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 10 5781604 5781604 C T FAM208B Missense_Mutation p.L491F 0.38 deleterious(0.01) possibly_damaging(0.669) TCGA-DU-6392-01 10 5788715 5788715 C A FAM208B Missense_Mutation p.P1111T 0.43 deleterious(0.01) benign(0.305) TCGA-DU-6392-01 10 5788961 5788961 C T FAM208B Silent p.L1193L 0.41 TCGA-DU-6392-01 10 5791086 5791086 C T FAM208B Missense_Mutation p.A1901V 0.35 deleterious(0.02) benign(0.014) TCGA-DU-6392-01 10 5803400 5803400 G A FAM208B Silent p.Q2380Q 0.10 TCGA-DU-6392-01 10 58118442 58118442 G A ZWINT Silent p.L223L 0.37 TCGA-DU-6392-01 10 5927718 5927718 G A ANKRD16 Silent p.G182G 0.41 TCGA-DU-6392-01 10 59986875 59986875 C T IPMK Missense_Mutation p.G101D 0.26 tolerated(0.37) benign(0.001) TCGA-DU-6392-01 10 6001721 6001721 G T IL15RA Silent p.T204T 0.35 TCGA-DU-6392-01 10 61029813 61029813 G T FAM13C Missense_Mutation p.L217I 0.10 tolerated(0.3) benign(0.126) TCGA-DU-6392-01 10 61413727 61413727 T C SLC16A9 Missense_Mutation p.T353A 0.44 tolerated(0.57) benign(0.401) TCGA-DU-6392-01 10 61414270 61414270 G T SLC16A9 Missense_Mutation p.L172M 0.32 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 10 6152028 6152028 C T RBM17 Silent p.Y214Y 0.35 TCGA-DU-6392-01 10 6157548 6157548 C T RBM17 3'UTR 0.43 TCGA-DU-6392-01 10 61802441 61802441 G A ANK3 3'UTR 0.39 TCGA-DU-6392-01 10 61828939 61828939 G T ANK3 Silent p.A3900A 0.10 TCGA-DU-6392-01 10 61829138 61829138 A G ANK3 Missense_Mutation p.V3834A 0.06 benign(0) TCGA-DU-6392-01 10 61831460 61831460 G T ANK3 Missense_Mutation p.S3060Y 0.37 probably_damaging(0.979) TCGA-DU-6392-01 10 61835998 61835998 A G ANK3 Silent p.S1547S 0.11 TCGA-DU-6392-01 10 61932131 61932131 G A ANK3 Missense_Mutation p.R805C 0.27 probably_damaging(0.999) TCGA-DU-6392-01 10 62545441 62545441 C T CDK1 Nonsense_Mutation p.Q72* 0.10 TCGA-DU-6392-01 10 6255642 6255642 G A PFKFB3 Missense_Mutation p.A45T 0.35 benign(0.213) TCGA-DU-6392-01 10 6259132 6259132 C T PFKFB3 Missense_Mutation p.T159I 0.38 benign(0.215) TCGA-DU-6392-01 10 62631104 62631104 A C RHOBTB1 3'UTR 0.43 TCGA-DU-6392-01 10 63170129 63170129 G T TMEM26 Missense_Mutation p.P353H 0.12 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-DU-6392-01 10 63170226 63170226 C A TMEM26 Missense_Mutation p.G321C 0.40 deleterious(0.03) benign(0.237) TCGA-DU-6392-01 10 63173346 63173346 G T TMEM26 Intron 0.25 TCGA-DU-6392-01 10 63817058 63817058 C T ARID5B Silent p.P343P 0.27 TCGA-DU-6392-01 10 63851262 63851262 T C ARID5B Silent p.S680S 0.45 TCGA-DU-6392-01 10 64136617 64136617 T C ZNF365 Missense_Mutation p.V222A 0.41 deleterious(0.02) possibly_damaging(0.744) TCGA-DU-6392-01 10 64973474 64973474 G T JMJD1C Missense_Mutation p.A818D 0.55 deleterious(0.01) probably_damaging(0.964) TCGA-DU-6392-01 10 6520955 6520955 T G PRKCQ Missense_Mutation p.K451T 0.36 deleterious(0.02) possibly_damaging(0.635) TCGA-DU-6392-01 10 6549437 6549437 G A PRKCQ Nonsense_Mutation p.R114* 0.37 TCGA-DU-6392-01 10 6557047 6557047 G A PRKCQ Silent p.C17C 0.19 TCGA-DU-6392-01 10 68139106 68139106 G A CTNNA3 Silent p.S512S 0.09 TCGA-DU-6392-01 10 69682740 69682740 C T HERC4 Missense_Mutation p.R1041H 0.35 deleterious(0.01) possibly_damaging(0.861) TCGA-DU-6392-01 10 69750132 69750132 A C HERC4 Missense_Mutation p.L490R 0.20 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 10 69804316 69804316 C G HERC4 Missense_Mutation p.Q77H 0.08 tolerated(0.56) benign(0.009) TCGA-DU-6392-01 10 69966569 69966569 G A MYPN Silent p.Q1234Q 0.39 TCGA-DU-6392-01 10 70056847 70056847 T G PBLD Intron 0.53 TCGA-DU-6392-01 10 70204841 70204841 C A DNA2 Splice_Site p.X439_splice 0.38 TCGA-DU-6392-01 10 70243182 70243182 T - SLC25A16 3'UTR 0.38 TCGA-DU-6392-01 10 70248235 70248235 C T SLC25A16 Silent p.A254A 0.31 TCGA-DU-6392-01 10 70333561 70333561 C A TET1 Missense_Mutation p.P489H 0.13 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 10 70531163 70531163 C T CCAR1 Silent p.G833G 0.39 TCGA-DU-6392-01 10 70645583 70645583 C T STOX1 Silent p.G677G 0.42 TCGA-DU-6392-01 10 70646364 70646364 G T STOX1 Missense_Mutation p.D938Y 0.48 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 70652425 70652425 G A STOX1 Missense_Mutation p.G968D 0.38 tolerated(0.11) benign(0.384) TCGA-DU-6392-01 10 70723131 70723131 G A DDX21 Missense_Mutation p.R231Q 0.35 deleterious(0.01) possibly_damaging(0.746) TCGA-DU-6392-01 10 70738645 70738645 T C DDX21 Silent p.I650I 0.12 TCGA-DU-6392-01 10 70742539 70742539 C T DDX21 Missense_Mutation p.R775W 0.33 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-DU-6392-01 10 70775527 70775527 A C KIAA1279 Missense_Mutation p.K407N 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 10 70775831 70775831 C A KIAA1279 Missense_Mutation p.L509I 0.12 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 10 70916787 70916787 C A VPS26A Missense_Mutation p.T85N 0.28 tolerated(0.22) benign(0.02) TCGA-DU-6392-01 10 70960148 70960148 G T SUPV3L1 Missense_Mutation p.A471S 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 10 70968443 70968443 C T SUPV3L1 Silent p.H671H 0.28 TCGA-DU-6392-01 10 71016832 71016832 A T HKDC1 Missense_Mutation p.D626V 0.16 deleterious(0) possibly_damaging(0.634) TCGA-DU-6392-01 10 71129352 71129352 C T HK1 Missense_Mutation p.R287W 0.26 deleterious(0.01) probably_damaging(0.926) TCGA-DU-6392-01 10 71175705 71175705 G A TACR2 Silent p.T125T 0.36 TCGA-DU-6392-01 10 71873814 71873814 C T AIFM2 3'UTR 0.27 TCGA-DU-6392-01 10 71913627 71913627 C A SAR1A Missense_Mutation p.E149D 0.07 tolerated(0.2) benign(0.032) TCGA-DU-6392-01 10 71920819 71920819 T C SAR1A Missense_Mutation p.E62G 0.06 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 10 72100321 72100321 T A LRRC20 Missense_Mutation p.S74C 0.35 tolerated(0.28) possibly_damaging(0.7) TCGA-DU-6392-01 10 7212972 7212972 G A SFMBT2 Missense_Mutation p.P821L 0.28 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 72136267 72136267 G A LRRC20 Missense_Mutation p.A8V 0.44 deleterious(0) benign(0.003) TCGA-DU-6392-01 10 72195499 72195499 G T NODAL Missense_Mutation p.T145N 0.30 tolerated(0.2) possibly_damaging(0.846) TCGA-DU-6392-01 10 7239607 7239607 T C SFMBT2 Missense_Mutation p.N534S 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 10 72468457 72468457 C T ADAMTS14 Silent p.L265L 0.33 TCGA-DU-6392-01 10 72511319 72511319 G A ADAMTS14 Missense_Mutation p.S841N 0.39 tolerated(0.77) benign(0.011) TCGA-DU-6392-01 10 72520573 72520573 C T ADAMTS14 Silent p.P1215P 0.23 TCGA-DU-6392-01 10 72541718 72541718 T G TBATA Missense_Mutation p.K39T 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.596) TCGA-DU-6392-01 10 72631635 72631635 T C SGPL1 Silent p.C317C 0.09 TCGA-DU-6392-01 10 72637079 72637080 - A SGPL1 Frame_Shift_Ins p.P567Tfs*9 0.11 TCGA-DU-6392-01 10 72644921 72644921 G A PCBD1 Silent p.N68N 0.35 TCGA-DU-6392-01 10 73059092 73059092 G T UNC5B 3'UTR 0.35 TCGA-DU-6392-01 10 73115972 73115972 C A SLC29A3 Missense_Mutation p.L249M 0.25 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 10 73206145 73206145 G A CDH23 Silent p.T46T 0.31 TCGA-DU-6392-01 10 73544138 73544138 C A CDH23 Silent p.I1826I 0.36 TCGA-DU-6392-01 10 73562688 73562688 C T CDH23 Missense_Mutation p.R266W 0.44 deleterious(0.01) probably_damaging(0.937) TCGA-DU-6392-01 10 73563013 73563013 C A CDH23 Missense_Mutation p.P330T 0.44 tolerated(0.83) benign(0.07) TCGA-DU-6392-01 10 73571132 73571132 C T CDH23 Silent p.N806N 0.10 TCGA-DU-6392-01 10 73581732 73581732 G T PSAP Missense_Mutation p.F270L 0.28 tolerated(0.11) possibly_damaging(0.524) TCGA-DU-6392-01 10 73767214 73767214 G A CHST3 Missense_Mutation p.R142H 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 73767297 73767297 C T CHST3 Missense_Mutation p.R170C 0.45 deleterious(0.01) probably_damaging(0.986) TCGA-DU-6392-01 10 73828040 73828040 G A SPOCK2 Missense_Mutation p.A165V 0.38 deleterious(0.01) benign(0.043) TCGA-DU-6392-01 10 7409762 7409762 C T SFMBT2 Silent p.T95T 0.45 TCGA-DU-6392-01 10 74767957 74767957 G T P4HA1 3'UTR 0.08 TCGA-DU-6392-01 10 74806697 74806697 G T P4HA1 Missense_Mutation p.L355I 0.24 tolerated(0.21) possibly_damaging(0.694) TCGA-DU-6392-01 10 74912051 74912051 C A ECD Missense_Mutation p.L304F 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 74914148 74914148 T C ECD Missense_Mutation p.I217V 0.28 tolerated(0.27) benign(0.052) TCGA-DU-6392-01 10 75406793 75406793 G A SYNPO2L Missense_Mutation p.P873S 0.07 tolerated(0.3) benign(0.006) TCGA-DU-6392-01 10 75408082 75408082 G T SYNPO2L Missense_Mutation p.P443H 0.35 deleterious(0.05) possibly_damaging(0.503) TCGA-DU-6392-01 10 75434428 75434428 C T AGAP5 Missense_Mutation p.A664T 0.57 deleterious(0.03) probably_damaging(0.954) TCGA-DU-6392-01 10 75525889 75525889 G A SEC24C Missense_Mutation p.V510I 0.33 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 10 75525908 75525908 G T SEC24C Missense_Mutation p.R516M 0.15 deleterious(0) possibly_damaging(0.881) TCGA-DU-6392-01 10 75528876 75528876 A C SEC24C Missense_Mutation p.D797A 0.18 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 75535560 75535560 G T FUT11 3'UTR 0.53 TCGA-DU-6392-01 10 75548921 75548921 C T ZSWIM8 Missense_Mutation p.R144W 0.57 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 10 75549186 75549186 C A ZSWIM8 Missense_Mutation p.N173K 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6392-01 10 75550024 75550024 C T ZSWIM8 Silent p.F305F 0.36 TCGA-DU-6392-01 10 75558185 75558185 C T ZSWIM8 Missense_Mutation p.R1384W 0.35 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 10 75561190 75561190 C T ZSWIM8 Silent p.N1814N 0.33 TCGA-DU-6392-01 10 75566178 75566178 C T NDST2 Missense_Mutation p.V435M 0.43 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 10 75585056 75585056 G A CAMK2G Missense_Mutation p.A347V 0.31 tolerated_low_confidence(0.34) benign(0.001) TCGA-DU-6392-01 10 75672800 75672800 C A C10orf55 Splice_Site 0.46 TCGA-DU-6392-01 10 75896428 75896428 G T AP3M1 Missense_Mutation p.P136Q 0.09 deleterious(0) possibly_damaging(0.812) TCGA-DU-6392-01 10 7618685 7618685 G A ITIH5 Missense_Mutation p.T570I 0.19 tolerated(0.1) benign(0.002) TCGA-DU-6392-01 10 7621856 7621856 G A ITIH5 Missense_Mutation p.A427V 0.39 tolerated(0.92) benign(0.037) TCGA-DU-6392-01 10 76729777 76729777 G T KAT6B Splice_Site p.X283_splice 0.34 TCGA-DU-6392-01 10 76741602 76741602 T G KAT6B Missense_Mutation p.I763M 0.09 possibly_damaging(0.533) TCGA-DU-6392-01 10 76781930 76781930 A G KAT6B Missense_Mutation p.N1105D 0.48 benign(0.001) TCGA-DU-6392-01 10 76789241 76789241 C T KAT6B Silent p.S1553S 0.41 TCGA-DU-6392-01 10 76789402 76789402 C A KAT6B Missense_Mutation p.P1607H 0.26 probably_damaging(0.999) TCGA-DU-6392-01 10 76790682 76790682 G A KAT6B Missense_Mutation p.A2034T 0.12 probably_damaging(0.991) TCGA-DU-6392-01 10 76818215 76818215 G A DUPD1 Silent p.L20L 0.41 TCGA-DU-6392-01 10 76854614 76854614 G T DUSP13 Silent p.A189A 0.16 TCGA-DU-6392-01 10 76924436 76924436 G A SAMD8 Silent p.T204T 0.35 TCGA-DU-6392-01 10 76980698 76980698 G T VDAC2 Missense_Mutation p.R200M 0.31 deleterious(0.05) benign(0.098) TCGA-DU-6392-01 10 77158794 77158794 G T ZNF503 Missense_Mutation p.L552M 0.67 tolerated(0.08) probably_damaging(0.917) TCGA-DU-6392-01 10 7801869 7801869 G A KIN Missense_Mutation p.T368I 0.07 deleterious(0.05) possibly_damaging(0.698) TCGA-DU-6392-01 10 7820976 7820976 C T KIN Missense_Mutation p.C128Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 10 79603266 79603266 G A DLG5 Silent p.L355L 0.08 TCGA-DU-6392-01 10 79628942 79628942 G A DLG5 Silent p.S106S 0.45 TCGA-DU-6392-01 10 79742556 79742556 C A POLR3A Missense_Mutation p.R1150I 0.13 tolerated(0.28) benign(0.139) TCGA-DU-6392-01 10 79753080 79753080 G T POLR3A Missense_Mutation p.L888M 0.09 tolerated(0.26) benign(0.063) TCGA-DU-6392-01 10 79777428 79777428 A G POLR3A Missense_Mutation p.Y446H 0.49 tolerated(0.16) benign(0.021) TCGA-DU-6392-01 10 79784456 79784456 C T POLR3A Missense_Mutation p.V166I 0.31 tolerated(0.17) benign(0.168) TCGA-DU-6392-01 10 8005992 8005992 G T TAF3 Missense_Mutation p.E173D 0.09 tolerated(0.08) benign(0.084) TCGA-DU-6392-01 10 8100600 8100600 G A GATA3 Missense_Mutation p.D192N 0.25 tolerated(0.15) benign(0.039) TCGA-DU-6392-01 10 81060680 81060680 C T ZMIZ1 Missense_Mutation p.T667I 0.21 possibly_damaging(0.828) TCGA-DU-6392-01 10 8115914 8115914 G A GATA3 Silent p.T421T 0.38 TCGA-DU-6392-01 10 81373771 81373771 G T SFTPA1 Missense_Mutation p.A232S 0.10 tolerated(0.72) possibly_damaging(0.507) TCGA-DU-6392-01 10 81917736 81917736 T C ANXA11 Missense_Mutation p.N441S 0.34 tolerated(0.09) possibly_damaging(0.526) TCGA-DU-6392-01 10 82180237 82180237 A G FAM213A Missense_Mutation p.Q5R 0.11 tolerated_low_confidence(0.18) benign(0.051) TCGA-DU-6392-01 10 82182260 82182260 G A FAM213A Missense_Mutation p.R89Q 0.11 deleterious(0.03) possibly_damaging(0.563) TCGA-DU-6392-01 10 859132 859132 C T LARP4B Missense_Mutation p.A651T 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 85982088 85982088 C A LRIT2 Missense_Mutation p.G414V 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 85997350 85997350 C T LRIT1 Missense_Mutation p.R72H 0.44 deleterious(0.04) benign(0.03) TCGA-DU-6392-01 10 87406765 87406765 A G GRID1 Intron 0.40 TCGA-DU-6392-01 10 875496 875496 A G LARP4B Silent p.F318F 0.11 TCGA-DU-6392-01 10 88218790 88218790 G A WAPAL Silent p.Y871Y 0.33 TCGA-DU-6392-01 10 88259847 88259847 T C WAPAL Missense_Mutation p.T385A 0.40 tolerated_low_confidence(0.11) benign(0.006) TCGA-DU-6392-01 10 88414583 88414583 C T OPN4 Nonsense_Mutation p.Q15* 0.40 TCGA-DU-6392-01 10 88446979 88446979 C T LDB3 Silent p.I281I 0.36 TCGA-DU-6392-01 10 88476230 88476230 G A LDB3 Missense_Mutation p.A465T 0.32 tolerated(0.38) benign(0) TCGA-DU-6392-01 10 88485932 88485932 G A LDB3 Missense_Mutation p.D678N 0.28 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 10 88485985 88485985 G A LDB3 Nonsense_Mutation p.W695* 0.41 TCGA-DU-6392-01 10 88728331 88728331 G T ADIRF Missense_Mutation p.K10N 0.52 deleterious(0.01) benign(0.16) TCGA-DU-6392-01 10 88769219 88769219 G A RP11-96C23.10 3'Flank 0.37 TCGA-DU-6392-01 10 88811578 88811578 G A GLUD1 Missense_Mutation p.T536I 0.33 deleterious(0.03) possibly_damaging(0.656) TCGA-DU-6392-01 10 88912116 88912116 A G FAM35A Silent p.E335E 0.44 TCGA-DU-6392-01 10 88912259 88912259 A C FAM35A Missense_Mutation p.E383A 0.37 deleterious(0) possibly_damaging(0.487) TCGA-DU-6392-01 10 89272941 89272941 C A MINPP1 Missense_Mutation p.S299Y 0.09 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 10 89544250 89544250 G A ATAD1 Missense_Mutation p.S187F 0.40 tolerated(0.07) benign(0.088) TCGA-DU-6392-01 10 89624224 89624224 G A PTEN 5'UTR 0.38 TCGA-DU-6392-01 10 89692973 89692973 G T PTEN Missense_Mutation p.D153Y 0.33 deleterious(0) possibly_damaging(0.69) TCGA-DU-6392-01 10 90486579 90486579 C T LIPK Missense_Mutation p.P45S 0.21 deleterious(0.03) benign(0.396) TCGA-DU-6392-01 10 90526114 90526114 C T LIPN Missense_Mutation p.H172Y 0.26 tolerated(0.23) benign(0.187) TCGA-DU-6392-01 10 90701149 90701149 T C ACTA2 Splice_Site p.X152_splice 0.12 TCGA-DU-6392-01 10 90770572 90770572 G T FAS Missense_Mutation p.V190L 0.07 tolerated(0.58) benign(0.145) TCGA-DU-6392-01 10 90966941 90966941 G A CH25H Missense_Mutation p.P37S 0.40 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 10 90984859 90984859 T C LIPA Missense_Mutation p.H222R 0.08 tolerated(0.37) benign(0.018) TCGA-DU-6392-01 10 910103 910103 C A LARP4B Missense_Mutation p.W83C 0.19 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 91066262 91066262 C A IFIT2 Nonsense_Mutation p.Y183* 0.29 TCGA-DU-6392-01 10 91066350 91066350 G A IFIT2 Missense_Mutation p.V213I 0.33 tolerated(0.05) benign(0.063) TCGA-DU-6392-01 10 91066650 91066650 C A IFIT2 Missense_Mutation p.L313M 0.37 tolerated(0.09) benign(0.428) TCGA-DU-6392-01 10 91098617 91098617 G A IFIT3 Missense_Mutation p.A69T 0.44 tolerated(0.1) possibly_damaging(0.503) TCGA-DU-6392-01 10 91144325 91144325 C A IFIT1B Missense_Mutation p.L419I 0.10 tolerated(0.88) benign(0.006) TCGA-DU-6392-01 10 91162664 91162664 G A IFIT1 Missense_Mutation p.R211H 0.39 deleterious(0.01) possibly_damaging(0.641) TCGA-DU-6392-01 10 91163009 91163009 T C IFIT1 Missense_Mutation p.I326T 0.16 deleterious(0.02) benign(0.248) TCGA-DU-6392-01 10 91177747 91177747 C A IFIT5 Missense_Mutation p.S264Y 0.11 tolerated(1) possibly_damaging(0.815) TCGA-DU-6392-01 10 91484805 91484805 T C KIF20B Silent p.L631L 0.44 TCGA-DU-6392-01 10 91518496 91518496 A G KIF20B Missense_Mutation p.S1473G 0.26 tolerated(0.28) benign(0.003) TCGA-DU-6392-01 10 92508915 92508915 C T HTR7 Missense_Mutation p.A326T 0.35 tolerated(0.22) probably_damaging(0.954) TCGA-DU-6392-01 10 92680898 92680898 C A ANKRD1 5'UTR 0.27 TCGA-DU-6392-01 10 92982577 92982577 C A PCGF5 5'UTR 0.41 TCGA-DU-6392-01 10 93008278 93008278 G T PCGF5 Nonsense_Mutation p.E76* 0.11 TCGA-DU-6392-01 10 93260993 93260993 G T HECTD2 Missense_Mutation p.K704N 0.35 deleterious(0) possibly_damaging(0.906) TCGA-DU-6392-01 10 93390465 93390465 A G PPP1R3C Missense_Mutation p.L58P 0.06 deleterious(0.04) probably_damaging(1) TCGA-DU-6392-01 10 93619382 93619382 C T TNKS2 Silent p.D1086D 0.29 TCGA-DU-6392-01 10 93622852 93622852 G A TNKS2 3'UTR 0.36 TCGA-DU-6392-01 10 93743997 93743997 C T BTAF1 Missense_Mutation p.L755F 0.44 tolerated(0.54) benign(0.082) TCGA-DU-6392-01 10 93768689 93768689 C T BTAF1 Missense_Mutation p.A1306V 0.15 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 10 93784717 93784717 G A BTAF1 Missense_Mutation p.V1690I 0.11 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 10 93786957 93786957 A G BTAF1 Missense_Mutation p.K1769R 0.15 deleterious(0) benign(0.147) TCGA-DU-6392-01 10 93940768 93940768 C T CPEB3 Missense_Mutation p.G392R 0.15 deleterious(0.01) benign(0.008) TCGA-DU-6392-01 10 93999628 93999628 G T CPEB3 Silent p.T160T 0.39 TCGA-DU-6392-01 10 94109579 94109579 A G MARCH5 Silent p.L235L 0.37 TCGA-DU-6392-01 10 94214257 94214257 G A IDE Silent p.L1002L 0.41 TCGA-DU-6392-01 10 94399627 94399627 C A KIF11 Missense_Mutation p.P746Q 0.41 deleterious(0.05) benign(0.165) TCGA-DU-6392-01 10 94452481 94452481 G A HHEX Missense_Mutation p.R188Q 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 95157186 95157186 C T MYOF Missense_Mutation p.A417T 0.09 deleterious(0.05) probably_damaging(1) TCGA-DU-6392-01 10 95169331 95169331 T C MYOF Missense_Mutation p.Q200R 0.06 deleterious(0.01) probably_damaging(0.926) TCGA-DU-6392-01 10 95326896 95326896 T C FFAR4 Missense_Mutation p.I140T 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 95385337 95385337 C A PDE6C Missense_Mutation p.F290L 0.11 deleterious(0.05) probably_damaging(0.999) TCGA-DU-6392-01 10 95394638 95394638 G A PDE6C Missense_Mutation p.D415N 0.52 tolerated(0.13) probably_damaging(0.986) TCGA-DU-6392-01 10 95399908 95399908 A C PDE6C Missense_Mutation p.I522L 0.42 tolerated(0.2) benign(0.038) TCGA-DU-6392-01 10 95418727 95418727 A G PDE6C Silent p.K702K 0.10 TCGA-DU-6392-01 10 95422400 95422400 G A PDE6C Silent p.K789K 0.42 TCGA-DU-6392-01 10 95791321 95791321 T C PLCE1 Missense_Mutation p.I173T 0.23 tolerated_low_confidence(0.43) benign(0) TCGA-DU-6392-01 10 96005763 96005763 C T PLCE1 Silent p.Y827Y 0.33 TCGA-DU-6392-01 10 96006077 96006077 C T PLCE1 Missense_Mutation p.T932M 0.39 tolerated(0.09) benign(0.004) TCGA-DU-6392-01 10 96012083 96012083 G A PLCE1 Missense_Mutation p.R1036Q 0.36 tolerated(0.06) possibly_damaging(0.595) TCGA-DU-6392-01 10 96109022 96109022 G A NOC3L Silent p.Y414Y 0.38 TCGA-DU-6392-01 10 96112807 96112807 T G NOC3L Missense_Mutation p.K235T 0.09 deleterious(0.04) possibly_damaging(0.845) TCGA-DU-6392-01 10 96162399 96162399 G A TBC1D12 Missense_Mutation p.C10Y 0.26 deleterious_low_confidence(0) benign(0.332) TCGA-DU-6392-01 10 96317912 96317912 A - HELLS Frame_Shift_Del p.K99Nfs*9 0.24 TCGA-DU-6392-01 10 96356854 96356854 G A HELLS Missense_Mutation p.R803Q 0.46 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 10 96829174 96829174 C T CYP2C8 5'UTR 0.26 TCGA-DU-6392-01 10 97028547 97028547 G T PDLIM1 Silent p.A107A 0.13 TCGA-DU-6392-01 10 97078130 97078130 C T SORBS1 Missense_Mutation p.R1253H 0.25 deleterious(0.01) possibly_damaging(0.888) TCGA-DU-6392-01 10 97096671 97096671 C T SORBS1 Silent p.T1082T 0.29 TCGA-DU-6392-01 10 97114698 97114698 G A SORBS1 Missense_Mutation p.P719S 0.30 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-DU-6392-01 10 97366614 97366614 G A ALDH18A1 Nonsense_Mutation p.R765* 0.43 TCGA-DU-6392-01 10 97602166 97602166 G A ENTPD1 Missense_Mutation p.E122K 0.38 tolerated(0.33) benign(0.011) TCGA-DU-6392-01 10 97769581 97769581 G T CC2D2B Splice_Site p.X8_splice 0.20 TCGA-DU-6392-01 10 97779196 97779196 G A CC2D2B Intron 0.31 TCGA-DU-6392-01 10 97779425 97779425 G A CC2D2B Intron 0.41 TCGA-DU-6392-01 10 97817680 97817680 G A CCNJ Silent p.Q278Q 0.38 TCGA-DU-6392-01 10 97917326 97917326 A G ZNF518A RNA 0.39 TCGA-DU-6392-01 10 97917704 97917704 A - ZNF518A RNA 0.09 TCGA-DU-6392-01 10 97964316 97964316 G A BLNK Nonsense_Mutation p.Q292* 0.38 TCGA-DU-6392-01 10 97964351 97964351 C T BLNK Missense_Mutation p.R280H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 10 98146790 98146790 C T TLL2 Missense_Mutation p.R591H 0.42 tolerated(0.05) benign(0.098) TCGA-DU-6392-01 10 98165092 98165092 C A TLL2 Splice_Site p.X389_splice 0.13 TCGA-DU-6392-01 10 98386590 98386590 G A PIK3AP1 Missense_Mutation p.T515M 0.09 tolerated(0.11) benign(0.139) TCGA-DU-6392-01 10 98741496 98741496 G A C10orf12 Missense_Mutation p.G117S 0.38 tolerated(1) benign(0) TCGA-DU-6392-01 10 98741938 98741938 C A C10orf12 Missense_Mutation p.S264Y 0.35 deleterious(0.04) possibly_damaging(0.807) TCGA-DU-6392-01 10 98743924 98743924 A T C10orf12 Missense_Mutation p.K926I 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 98824578 98824578 G A SLIT1 Missense_Mutation p.R181W 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 99131923 99131923 T C RRP12 Silent p.R750R 0.50 TCGA-DU-6392-01 10 99132933 99132933 C T RRP12 Missense_Mutation p.R684H 0.33 deleterious(0.03) benign(0.068) TCGA-DU-6392-01 10 99144989 99144989 T C RRP12 Missense_Mutation p.E381G 0.07 tolerated(0.11) benign(0.01) TCGA-DU-6392-01 10 99213323 99213323 G A ZDHHC16 Missense_Mutation p.R198Q 0.45 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 10 99213591 99213591 G A ZDHHC16 Silent p.A242A 0.10 TCGA-DU-6392-01 10 99329915 99329915 G A UBTD1 Missense_Mutation p.D107N 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 10 99439405 99439405 G A AVPI1 Silent p.G86G 0.36 TCGA-DU-6392-01 10 99509276 99509276 G A ZFYVE27 Silent p.L199L 0.13 TCGA-DU-6392-01 10 99655064 99655064 C A CRTAC1 Missense_Mutation p.R475M 0.46 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 10 99677334 99677334 G T CRTAC1 Missense_Mutation p.P213H 0.12 deleterious(0.05) benign(0.428) TCGA-DU-6392-01 10 99995191 99995191 C T R3HCC1L Missense_Mutation p.A681V 0.35 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 11 10024128 10024128 G T SBF2 Missense_Mutation p.S243Y 0.40 deleterious(0) probably_damaging(0.936) TCGA-DU-6392-01 11 1006602 1006602 G A AP2A2 Missense_Mutation p.D761N 0.51 tolerated(0.47) benign(0.041) TCGA-DU-6392-01 11 100863304 100863304 T C TMEM133 Missense_Mutation p.S89P 0.26 tolerated_low_confidence(0.29) possibly_damaging(0.504) TCGA-DU-6392-01 11 100909896 100909896 G A PGR Missense_Mutation p.P918L 0.25 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 100998621 100998621 G A PGR Missense_Mutation p.A394V 0.33 tolerated_low_confidence(0.15) benign(0.207) TCGA-DU-6392-01 11 1011330 1011330 G A AP2A2 3'UTR 0.22 TCGA-DU-6392-01 11 101323647 101323647 G T TRPC6 3'UTR 0.32 TCGA-DU-6392-01 11 101341917 101341917 G A TRPC6 Silent p.N802N 0.30 TCGA-DU-6392-01 11 101342090 101342090 C G TRPC6 Missense_Mutation p.A745P 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 11 1016442 1016442 G A MUC6 Missense_Mutation p.P2120L 0.56 benign(0.004) TCGA-DU-6392-01 11 1017383 1017383 G T MUC6 Silent p.T1806T 0.10 TCGA-DU-6392-01 11 101793417 101793417 G T KIAA1377 Missense_Mutation p.Q58H 0.43 tolerated(0.06) probably_damaging(0.996) TCGA-DU-6392-01 11 101815130 101815130 G A KIAA1377 Missense_Mutation p.R128Q 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-DU-6392-01 11 101829098 101829098 G A KIAA1377 Splice_Site p.X235_splice 0.22 TCGA-DU-6392-01 11 101834222 101834222 C A KIAA1377 Missense_Mutation p.S819Y 0.12 deleterious(0) probably_damaging(0.909) TCGA-DU-6392-01 11 1018737 1018737 G A MUC6 Missense_Mutation p.T1355M 0.41 unknown(0) TCGA-DU-6392-01 11 101929663 101929663 C T C11orf70 Missense_Mutation p.S82F 0.34 tolerated(0.09) benign(0.022) TCGA-DU-6392-01 11 101937226 101937227 - A C11orf70 Frame_Shift_Ins p.I96Nfs*2 0.45 TCGA-DU-6392-01 11 101953841 101953841 G A C11orf70 Missense_Mutation p.E239K 0.28 tolerated(0.09) benign(0.441) TCGA-DU-6392-01 11 102239204 102239204 G A BIRC2 Missense_Mutation p.V431M 0.44 deleterious(0) probably_damaging(0.937) TCGA-DU-6392-01 11 102272907 102272907 G A TMEM123 Missense_Mutation p.T63I 0.45 tolerated(0.1) possibly_damaging(0.702) TCGA-DU-6392-01 11 102477310 102477310 G A MMP20 Silent p.D303D 0.33 TCGA-DU-6392-01 11 1024853 1024853 G A MUC6 Silent p.C1072C 0.41 TCGA-DU-6392-01 11 102487664 102487664 C T MMP20 Missense_Mutation p.G85R 0.31 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 102562576 102562576 T C MMP27 Missense_Mutation p.K488R 0.09 tolerated_low_confidence(0.07) benign(0.035) TCGA-DU-6392-01 11 102642785 102642785 G A MMP10 Missense_Mutation p.P430S 0.35 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 11 102647349 102647349 G T MMP10 Missense_Mutation p.L261I 0.19 tolerated(0.63) probably_damaging(0.984) TCGA-DU-6392-01 11 102709846 102709846 A G MMP3 Missense_Mutation p.F355S 0.09 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 11 102713310 102713310 C T MMP3 Silent p.R117R 0.42 TCGA-DU-6392-01 11 102736621 102736621 T C MMP12 RNA 0.38 TCGA-DU-6392-01 11 1028756 1028756 G A MUC6 Missense_Mutation p.S494F 0.33 unknown(0) TCGA-DU-6392-01 11 103018615 103018615 G T DYNC2H1 Missense_Mutation p.Q939H 0.12 benign(0.086) TCGA-DU-6392-01 11 103026089 103026090 - T DYNC2H1 Frame_Shift_Ins p.G1202Wfs*11 0.12 TCGA-DU-6392-01 11 103026221 103026221 C T DYNC2H1 Silent p.A1245A 0.44 TCGA-DU-6392-01 11 103027235 103027235 C G DYNC2H1 Missense_Mutation p.T1288S 0.10 benign(0.001) TCGA-DU-6392-01 11 103039600 103039600 A - DYNC2H1 Frame_Shift_Del p.K1628Nfs*7 0.14 TCGA-DU-6392-01 11 103041675 103041675 G A DYNC2H1 Missense_Mutation p.G1738S 0.48 probably_damaging(1) TCGA-DU-6392-01 11 103048401 103048401 T C DYNC2H1 Silent p.C1997C 0.25 TCGA-DU-6392-01 11 103048487 103048487 C T DYNC2H1 Missense_Mutation p.T2026I 0.14 probably_damaging(1) TCGA-DU-6392-01 11 103107184 103107184 T C DYNC2H1 Silent p.C3245C 0.32 TCGA-DU-6392-01 11 103870879 103870879 G A PDGFD Silent p.L77L 0.31 TCGA-DU-6392-01 11 103870925 103870925 G A PDGFD Silent p.N61N 0.08 TCGA-DU-6392-01 11 103907548 103907548 G A DDI1 5'UTR 0.10 TCGA-DU-6392-01 11 103907867 103907867 G A DDI1 Missense_Mutation p.S106N 0.09 tolerated(0.22) benign(0.005) TCGA-DU-6392-01 11 103908442 103908442 A T DDI1 Missense_Mutation p.I298F 0.10 deleterious(0) probably_damaging(0.951) TCGA-DU-6392-01 11 104819404 104819404 C A CASP4 Splice_Site p.X261_splice 0.35 TCGA-DU-6392-01 11 104897026 104897026 C T CASP1 Missense_Mutation p.V392M 0.44 tolerated(0.17) possibly_damaging(0.797) TCGA-DU-6392-01 11 104897599 104897599 A G CASP1 Silent p.C362C 0.18 TCGA-DU-6392-01 11 10516515 10516515 C T AMPD3 Missense_Mutation p.R411C 0.45 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 10521710 10521710 C T AMPD3 Silent p.D554D 0.11 TCGA-DU-6392-01 11 105481724 105481724 G T GRIA4 5'UTR 0.48 TCGA-DU-6392-01 11 105483225 105483225 C A GRIA4 Intron 0.36 TCGA-DU-6392-01 11 105845055 105845055 A T GRIA4 Missense_Mutation p.S810C 0.10 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 11 105929784 105929784 C T KBTBD3 Missense_Mutation p.R14Q 0.23 tolerated_low_confidence(0.51) benign(0.001) TCGA-DU-6392-01 11 10597987 10597987 A G MRVI1 Silent p.S877S 0.45 TCGA-DU-6392-01 11 10615119 10615119 C T MRVI1 Missense_Mutation p.A699T 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 11 106558254 106558254 G T GUCY1A2 3'UTR 0.36 TCGA-DU-6392-01 11 10673640 10673640 T C MRVI1 Missense_Mutation p.M53V 0.43 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-DU-6392-01 11 106849401 106849401 T G GUCY1A2 Missense_Mutation p.N144T 0.35 tolerated(0.58) benign(0.015) TCGA-DU-6392-01 11 107299983 107299983 T C CWF19L2 Silent p.K325K 0.09 TCGA-DU-6392-01 11 107463069 107463069 G T AP000889.3 Missense_Mutation p.Q89H 0.41 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-DU-6392-01 11 107518236 107518236 A G ELMOD1 Missense_Mutation p.I155V 0.10 tolerated(0.18) benign(0.022) TCGA-DU-6392-01 11 107526696 107526696 C A ELMOD1 Missense_Mutation p.L246M 0.45 tolerated(1) probably_damaging(0.988) TCGA-DU-6392-01 11 107673881 107673881 G A SLC35F2 Missense_Mutation p.A262V 0.23 tolerated(0.68) benign(0.004) TCGA-DU-6392-01 11 107677491 107677491 C A SLC35F2 Nonsense_Mutation p.G176* 0.38 TCGA-DU-6392-01 11 1077647 1077647 G T MUC2 Missense_Mutation p.A133S 0.64 possibly_damaging(0.795) TCGA-DU-6392-01 11 10777339 10777339 C A CTR9 Missense_Mutation p.L167I 0.08 tolerated(0.1) possibly_damaging(0.685) TCGA-DU-6392-01 11 107965640 107965640 G A CUL5 Missense_Mutation p.E557K 0.47 deleterious(0.01) probably_damaging(0.932) TCGA-DU-6392-01 11 107965657 107965658 - A CUL5 Frame_Shift_Ins p.N565Kfs*3 0.45 TCGA-DU-6392-01 11 108047023 108047023 G A NPAT Missense_Mutation p.A361V 0.37 tolerated(0.69) benign(0.003) TCGA-DU-6392-01 11 108059858 108059858 G A NPAT Silent p.H177H 0.38 TCGA-DU-6392-01 11 108068110 108068110 C T NPAT Silent p.Q25Q 0.30 TCGA-DU-6392-01 11 108121490 108121490 C A ATM Missense_Mutation p.S433Y 0.12 tolerated(1) benign(0.092) TCGA-DU-6392-01 11 108122575 108122575 G A ATM Missense_Mutation p.C540Y 0.45 tolerated(1) benign(0.001) TCGA-DU-6392-01 11 108163424 108163424 C T ATM Silent p.A1505A 0.37 TCGA-DU-6392-01 11 108163493 108163493 G A ATM Silent p.V1528V 0.36 TCGA-DU-6392-01 11 108165730 108165730 G A ATM Missense_Mutation p.R1618Q 0.42 tolerated(0.07) benign(0.048) TCGA-DU-6392-01 11 108175415 108175415 T G ATM Missense_Mutation p.F1837C 0.35 tolerated(0.16) benign(0.078) TCGA-DU-6392-01 11 10820605 10820605 T C EIF4G2 Silent p.E864E 0.44 TCGA-DU-6392-01 11 10823132 10823132 C T EIF4G2 Intron 0.33 TCGA-DU-6392-01 11 10824815 10824815 T C EIF4G2 Silent p.R280R 0.09 TCGA-DU-6392-01 11 10824816 10824816 C T EIF4G2 Missense_Mutation p.R280Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 1082672 1082672 G A MUC2 Missense_Mutation p.A641T 0.27 possibly_damaging(0.576) TCGA-DU-6392-01 11 1083767 1083767 G A MUC2 Missense_Mutation p.D767N 0.20 possibly_damaging(0.904) TCGA-DU-6392-01 11 108381794 108381794 C T EXPH5 Silent p.Q1480Q 0.41 TCGA-DU-6392-01 11 108382390 108382390 G T EXPH5 Missense_Mutation p.P1282T 0.23 tolerated(0.48) benign(0.007) TCGA-DU-6392-01 11 108547831 108547831 G A DDX10 Missense_Mutation p.R133H 0.29 tolerated(0.17) probably_damaging(0.996) TCGA-DU-6392-01 11 108559743 108559743 G A DDX10 Missense_Mutation p.S310N 0.30 tolerated(0.82) benign(0.134) TCGA-DU-6392-01 11 108594046 108594046 C T DDX10 Missense_Mutation p.P608S 0.50 tolerated(0.23) benign(0.006) TCGA-DU-6392-01 11 1090362 1090362 G A MUC2 Missense_Mutation p.V1220I 0.36 benign(0.048) TCGA-DU-6392-01 11 1099269 1099269 G A MUC2 Silent p.T2416T 0.23 TCGA-DU-6392-01 11 110023742 110023742 C T ZC3H12C Missense_Mutation p.A291V 0.26 deleterious(0.01) possibly_damaging(0.676) TCGA-DU-6392-01 11 110030072 110030072 C T ZC3H12C Silent p.D335D 0.38 TCGA-DU-6392-01 11 110035300 110035300 C T ZC3H12C Missense_Mutation p.T497I 0.10 deleterious(0) probably_damaging(0.972) TCGA-DU-6392-01 11 110102601 110102601 G A RDX Missense_Mutation p.A582V 0.08 tolerated(0.07) possibly_damaging(0.555) TCGA-DU-6392-01 11 110124681 110124681 G A RDX Nonsense_Mutation p.Q317* 0.43 TCGA-DU-6392-01 11 110124812 110124812 C T RDX Missense_Mutation p.R273H 0.49 deleterious(0.03) benign(0.07) TCGA-DU-6392-01 11 110450366 110450366 A G ARHGAP20 Missense_Mutation p.S1102P 0.33 tolerated_low_confidence(0.08) benign(0.04) TCGA-DU-6392-01 11 110451054 110451054 G T ARHGAP20 Missense_Mutation p.S872R 0.07 deleterious(0) possibly_damaging(0.456) TCGA-DU-6392-01 11 110451259 110451259 G A ARHGAP20 Missense_Mutation p.A804V 0.34 tolerated(0.07) possibly_damaging(0.905) TCGA-DU-6392-01 11 110451634 110451634 G A ARHGAP20 Missense_Mutation p.A679V 0.50 tolerated(0.67) benign(0.021) TCGA-DU-6392-01 11 110462832 110462832 C T ARHGAP20 Missense_Mutation p.A338T 0.24 tolerated(0.09) benign(0.098) TCGA-DU-6392-01 11 110485284 110485284 C T ARHGAP20 Splice_Site p.X210_splice 0.40 TCGA-DU-6392-01 11 111369364 111369364 C T BTG4 Nonsense_Mutation p.W46* 0.34 TCGA-DU-6392-01 11 111425990 111425991 - A LAYN Frame_Shift_Ins p.T222Nfs*3 0.40 TCGA-DU-6392-01 11 111591742 111591742 C T SIK2 Missense_Mutation p.P634S 0.30 tolerated(1) benign(0.001) TCGA-DU-6392-01 11 111746477 111746477 T C FDXACB1 Silent p.R348R 0.51 TCGA-DU-6392-01 11 111941312 111941312 T C PIH1D2 Missense_Mutation p.I221V 0.16 deleterious(0.01) possibly_damaging(0.708) TCGA-DU-6392-01 11 111953686 111953686 A G C11orf57 Missense_Mutation p.E291G 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DU-6392-01 11 113140774 113140774 G T NCAM1 Intron 0.27 TCGA-DU-6392-01 11 113211391 113211391 G T TTC12 Nonsense_Mutation p.E278* 0.10 TCGA-DU-6392-01 11 113233177 113233177 G T TTC12 Nonsense_Mutation p.E557* 0.26 TCGA-DU-6392-01 11 113235565 113235565 G A TTC12 Missense_Mutation p.V609I 0.47 tolerated(0.5) benign(0.001) TCGA-DU-6392-01 11 113604392 113604392 C T ZW10 3'UTR 0.11 TCGA-DU-6392-01 11 113607481 113607481 G A ZW10 Missense_Mutation p.P694S 0.31 deleterious(0.01) possibly_damaging(0.78) TCGA-DU-6392-01 11 113650928 113650928 C A CLDN25 Silent p.V137V 0.47 TCGA-DU-6392-01 11 113660051 113660051 C T ATF4P4 RNA 0.30 TCGA-DU-6392-01 11 113673879 113673879 C A USP28 Splice_Site p.X954_splice 0.21 TCGA-DU-6392-01 11 113673911 113673911 A G USP28 Missense_Mutation p.V944A 0.07 deleterious(0) benign(0.338) TCGA-DU-6392-01 11 113698033 113698033 A G USP28 Missense_Mutation p.F370S 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 11374418 11374418 C A CSNK2A3 Missense_Mutation p.K83N 0.38 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 11 113860543 113860543 T A HTR3A 3'UTR 0.27 TCGA-DU-6392-01 11 114320644 114320644 G T REXO2 Nonsense_Mutation p.E221* 0.29 TCGA-DU-6392-01 11 114401047 114401047 G A NXPE1 Missense_Mutation p.A86V 0.35 tolerated(0.08) benign(0.248) TCGA-DU-6392-01 11 114401308 114401308 G A NXPE1 5'UTR 0.46 TCGA-DU-6392-01 11 115080356 115080356 G T CADM1 Missense_Mutation p.P339H 0.12 tolerated(0.12) possibly_damaging(0.719) TCGA-DU-6392-01 11 115111086 115111086 G A CADM1 Missense_Mutation p.A60V 0.42 tolerated(0.76) possibly_damaging(0.747) TCGA-DU-6392-01 11 115111118 115111118 C T CADM1 Silent p.T49T 0.41 TCGA-DU-6392-01 11 1155535 1155535 G T MUC5AC Missense_Mutation p.A75S 0.27 tolerated(0.23) benign(0.086) TCGA-DU-6392-01 11 1155652 1155652 G A MUC5AC Missense_Mutation p.A114T 0.44 tolerated(0.25) benign(0.088) TCGA-DU-6392-01 11 116619186 116619186 G T BUD13 3'UTR 0.39 TCGA-DU-6392-01 11 116628595 116628595 C T BUD13 Missense_Mutation p.R524H 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 116652883 116652883 C T ZNF259 Silent p.K390K 0.46 TCGA-DU-6392-01 11 116692402 116692402 G A APOA4 Silent p.I124I 0.26 TCGA-DU-6392-01 11 116693862 116693862 C T APOA4 Missense_Mutation p.A16T 0.36 tolerated(1) unknown(0) TCGA-DU-6392-01 11 116728908 116728908 C A SIK3 Missense_Mutation p.Q985H 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.786) TCGA-DU-6392-01 11 116733035 116733035 C G SIK3 Missense_Mutation p.E598D 0.39 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-DU-6392-01 11 116798086 116798086 C A SIK3 Silent p.V97V 0.28 TCGA-DU-6392-01 11 117073684 117073684 C A TAGLN 5'UTR 0.47 TCGA-DU-6392-01 11 117096678 117096678 G A PCSK7 Missense_Mutation p.H277Y 0.35 deleterious(0) probably_damaging(0.916) TCGA-DU-6392-01 11 117100139 117100139 C T PCSK7 Missense_Mutation p.R141H 0.12 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 11 117109762 117109762 C T RNF214 Nonsense_Mutation p.R185* 0.45 TCGA-DU-6392-01 11 117161344 117161344 G A BACE1 Missense_Mutation p.T375M 0.11 tolerated(0.12) possibly_damaging(0.817) TCGA-DU-6392-01 11 117261583 117261583 T G CEP164 Silent p.A675A 0.31 TCGA-DU-6392-01 11 117280645 117280645 G A CEP164 Missense_Mutation p.D1354N 0.36 tolerated(0.17) probably_damaging(0.95) TCGA-DU-6392-01 11 117308769 117308769 C A DSCAML1 Missense_Mutation p.S1485I 0.34 deleterious(0) possibly_damaging(0.847) TCGA-DU-6392-01 11 117329587 117329587 G A DSCAML1 Missense_Mutation p.R1211W 0.30 deleterious(0.01) possibly_damaging(0.764) TCGA-DU-6392-01 11 117667814 117667814 C T DSCAML1 Missense_Mutation p.R54K 0.47 tolerated_low_confidence(0.19) unknown(0) TCGA-DU-6392-01 11 117710434 117710434 G A FXYD6 Intron 0.47 TCGA-DU-6392-01 11 117776418 117776418 C T TMPRSS13 Missense_Mutation p.G439E 0.31 deleterious(0.04) possibly_damaging(0.644) TCGA-DU-6392-01 11 117988750 117988750 G T TMPRSS4 3'UTR 0.45 TCGA-DU-6392-01 11 118037666 118037666 T C SCN2B Missense_Mutation p.D195G 0.09 deleterious(0.01) possibly_damaging(0.836) TCGA-DU-6392-01 11 118111057 118111057 C A MPZL3 Missense_Mutation p.D37Y 0.42 tolerated(0.08) benign(0.141) TCGA-DU-6392-01 11 118211282 118211282 C T CD3D Missense_Mutation p.E28K 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-DU-6392-01 11 118213366 118213366 C A CD3D 5'UTR 0.19 TCGA-DU-6392-01 11 118267227 118267227 C T UBE4A 3'UTR 0.35 TCGA-DU-6392-01 11 118352683 118352683 G A KMT2A Silent p.K1296K 0.49 TCGA-DU-6392-01 11 118374387 118374387 C A KMT2A Missense_Mutation p.L2594I 0.22 benign(0.346) TCGA-DU-6392-01 11 118376263 118376263 C A KMT2A Missense_Mutation p.S3219Y 0.53 possibly_damaging(0.794) TCGA-DU-6392-01 11 118392771 118392771 C T KMT2A Missense_Mutation p.R3935C 0.40 probably_damaging(0.999) TCGA-DU-6392-01 11 118471374 118471374 C T ARCN1 Missense_Mutation p.P494L 0.06 deleterious(0.04) benign(0.072) TCGA-DU-6392-01 11 118514793 118514793 G A PHLDB1 Missense_Mutation p.A1008T 0.45 tolerated(0.27) benign(0.001) TCGA-DU-6392-01 11 118526364 118526364 G T PHLDB1 Missense_Mutation p.E1308D 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 118529667 118529667 A G TREH Missense_Mutation p.W498R 0.38 deleterious(0) benign(0.258) TCGA-DU-6392-01 11 118630663 118630663 C T DDX6 Missense_Mutation p.A278T 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 118764321 118764321 G T CXCR5 Missense_Mutation p.R23I 0.43 tolerated(0.42) benign(0) TCGA-DU-6392-01 11 118773031 118773031 G T BCL9L Nonsense_Mutation p.S474* 0.10 TCGA-DU-6392-01 11 118889524 118889524 T C TRAPPC4 Missense_Mutation p.Y7H 0.05 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 11 118889933 118889933 C A TRAPPC4 Missense_Mutation p.L86M 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-DU-6392-01 11 118898339 118898339 C A SLC37A4 Missense_Mutation p.K208N 0.37 tolerated(0.18) benign(0.255) TCGA-DU-6392-01 11 118916210 118916210 G T HYOU1 3'UTR 0.26 TCGA-DU-6392-01 11 118939909 118939909 A G VPS11 Missense_Mutation p.M64V 0.06 tolerated(0.5) benign(0.001) TCGA-DU-6392-01 11 118944660 118944660 C T VPS11 Nonsense_Mutation p.R412* 0.43 TCGA-DU-6392-01 11 118948752 118948752 C T VPS11 Silent p.S578S 0.42 TCGA-DU-6392-01 11 118971440 118971440 G T DPAGT1 Silent p.A132A 0.23 TCGA-DU-6392-01 11 119002275 119002275 C T HINFP Missense_Mutation p.R148W 0.33 deleterious(0) probably_damaging(0.973) TCGA-DU-6392-01 11 119042083 119042084 - C NLRX1 5'UTR 0.35 TCGA-DU-6392-01 11 119051903 119051903 C A NLRX1 Missense_Mutation p.P764H 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 119053929 119053929 G A NLRX1 Silent p.G903G 0.27 TCGA-DU-6392-01 11 119057160 119057160 C T PDZD3 Intron 0.33 TCGA-DU-6392-01 11 119182354 119182355 - G MCAM Frame_Shift_Ins p.W432Lfs*22 0.35 TCGA-DU-6392-01 11 119212379 119212379 G T MFRP Missense_Mutation p.S540Y 0.11 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 11 119217195 119217195 C T MFRP Missense_Mutation p.C10Y 0.31 tolerated(0.47) benign(0.002) TCGA-DU-6392-01 11 119229791 119229791 T C USP2 Missense_Mutation p.E372G 0.13 deleterious(0.02) benign(0.017) TCGA-DU-6392-01 11 119510623 119510623 A T RP11-196E1.3 RNA 0.30 TCGA-DU-6392-01 11 119998186 119998186 G A TRIM29 Missense_Mutation p.A331V 0.55 tolerated(0.18) probably_damaging(0.966) TCGA-DU-6392-01 11 119999157 119999157 T A TRIM29 Missense_Mutation p.E284V 0.08 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 11 120099605 120099605 G A OAF Silent p.L192L 0.38 TCGA-DU-6392-01 11 120175896 120175896 G T POU2F3 Missense_Mutation p.R203M 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 120348158 120348158 G A ARHGEF12 Missense_Mutation p.G1152E 0.38 tolerated(0.84) benign(0.001) TCGA-DU-6392-01 11 120776016 120776016 G A GRIK4 Missense_Mutation p.M430I 0.39 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 11 120776053 120776053 C T GRIK4 Missense_Mutation p.R443C 0.38 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 11 120776145 120776145 C T GRIK4 Silent p.Y473Y 0.25 TCGA-DU-6392-01 11 120831757 120831757 G A GRIK4 Missense_Mutation p.G672R 0.41 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 11 120930770 120930770 T G TBCEL Missense_Mutation p.V311G 0.17 tolerated(0.33) benign(0.02) TCGA-DU-6392-01 11 120980054 120980054 C T TECTA Silent p.I111I 0.40 TCGA-DU-6392-01 11 120998824 120998824 G A TECTA Missense_Mutation p.C713Y 0.43 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 121032925 121032925 G A TECTA Silent p.G1706G 0.32 TCGA-DU-6392-01 11 121033015 121033015 C A TECTA Silent p.A1736A 0.18 TCGA-DU-6392-01 11 121058547 121058547 G T TECTA Missense_Mutation p.Q2002H 0.10 deleterious(0.01) possibly_damaging(0.824) TCGA-DU-6392-01 11 1213347 1213347 G T MUC5AC RNA 0.09 TCGA-DU-6392-01 11 121483485 121483485 C T SORL1 Missense_Mutation p.T1788I 0.39 tolerated(0.06) benign(0.082) TCGA-DU-6392-01 11 12183685 12183685 G A MICAL2 5'UTR 0.37 TCGA-DU-6392-01 11 12248580 12248580 C T MICAL2 Missense_Mutation p.R633C 0.42 tolerated(0.05) benign(0.001) TCGA-DU-6392-01 11 122722468 122722468 C T CRTAM Silent p.N87N 0.41 TCGA-DU-6392-01 11 122726544 122726544 C T CRTAM Missense_Mutation p.P211L 0.45 deleterious(0.05) benign(0.092) TCGA-DU-6392-01 11 122774696 122774696 G T C11orf63 Missense_Mutation p.K136N 0.30 deleterious(0.04) benign(0.117) TCGA-DU-6392-01 11 122953822 122953822 T C CLMP Missense_Mutation p.E217G 0.41 deleterious(0) possibly_damaging(0.85) TCGA-DU-6392-01 11 122955285 122955285 C T CLMP Missense_Mutation p.R108Q 0.47 tolerated(0.44) benign(0.008) TCGA-DU-6392-01 11 12316328 12316328 C A MICALCL Silent p.T450T 0.21 TCGA-DU-6392-01 11 123465527 123465527 T A GRAMD1B Missense_Mutation p.I142N 0.27 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 123676598 123676598 C T OR6M1 Missense_Mutation p.V154M 0.09 tolerated(0.05) benign(0.363) TCGA-DU-6392-01 11 123813655 123813655 C T OR6T1 Silent p.V297V 0.31 TCGA-DU-6392-01 11 123814133 123814133 C T OR6T1 Missense_Mutation p.G138D 0.35 tolerated(0.08) benign(0.022) TCGA-DU-6392-01 11 123988405 123988405 C T VWA5A Silent p.S23S 0.34 TCGA-DU-6392-01 11 123988576 123988576 G T VWA5A Missense_Mutation p.K80N 0.10 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 11 124135294 124135294 C T OR8G5 Missense_Mutation p.A191V 0.44 deleterious(0.01) probably_damaging(0.992) TCGA-DU-6392-01 11 124252823 124252823 C A OR8B2 Missense_Mutation p.Q139H 0.35 tolerated_low_confidence(0.08) benign(0.009) TCGA-DU-6392-01 11 124506809 124506809 C T SIAE 3'UTR 0.35 TCGA-DU-6392-01 11 124509617 124509617 C T SIAE Silent p.S371S 0.40 TCGA-DU-6392-01 11 124621457 124621457 C A VSIG2 Missense_Mutation p.K27N 0.36 deleterious(0.05) benign(0.428) TCGA-DU-6392-01 11 124637845 124637845 C A MSANTD2 Missense_Mutation p.D251Y 0.10 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-DU-6392-01 11 124789722 124789722 C T HEPN1 Nonsense_Mutation p.Q26* 0.41 TCGA-DU-6392-01 11 124793761 124793761 C T HEPACAM Silent p.S191S 0.30 TCGA-DU-6392-01 11 124947386 124947386 C T SLC37A2 Silent p.N92N 0.42 TCGA-DU-6392-01 11 12518085 12518085 C A PARVA Missense_Mutation p.L201M 0.35 deleterious(0.01) probably_damaging(0.985) TCGA-DU-6392-01 11 125359496 125359496 C A FEZ1 Nonsense_Mutation p.E60* 0.14 TCGA-DU-6392-01 11 125446203 125446203 G T EI24 Missense_Mutation p.V81L 0.22 tolerated(0.07) benign(0.155) TCGA-DU-6392-01 11 125488335 125488335 G A STT3A Silent p.E614E 0.31 TCGA-DU-6392-01 11 125497521 125497521 A G CHEK1 Missense_Mutation p.R29G 0.11 deleterious(0.01) possibly_damaging(0.867) TCGA-DU-6392-01 11 125503111 125503111 C T CHEK1 Missense_Mutation p.R160C 0.45 deleterious(0) probably_damaging(0.92) TCGA-DU-6392-01 11 125547891 125547891 C T ACRV1 Silent p.Q118Q 0.32 TCGA-DU-6392-01 11 125765587 125765587 C T PUS3 Missense_Mutation p.R159H 0.40 tolerated(0.23) benign(0.062) TCGA-DU-6392-01 11 125778165 125778165 C A DDX25 Missense_Mutation p.P129H 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 125873880 125873880 G T CDON Missense_Mutation p.S648Y 0.10 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 11 125889636 125889636 G A CDON Missense_Mutation p.T125I 0.31 tolerated(0.24) benign(0.056) TCGA-DU-6392-01 11 126136713 126136713 G A SRPR Missense_Mutation p.R211C 0.38 deleterious(0.05) possibly_damaging(0.849) TCGA-DU-6392-01 11 126145996 126145996 G A FOXRED1 Missense_Mutation p.A285T 0.25 deleterious(0.02) benign(0.305) TCGA-DU-6392-01 11 126301387 126301387 G A KIRREL3 Silent p.A541A 0.51 TCGA-DU-6392-01 11 1265399 1265399 C T MUC5B Missense_Mutation p.P2430L 0.32 unknown(0) TCGA-DU-6392-01 11 1268812 1268812 A G MUC5B Missense_Mutation p.T3568A 0.22 possibly_damaging(0.651) TCGA-DU-6392-01 11 1268914 1268914 C T MUC5B Missense_Mutation p.R3602C 0.31 probably_damaging(0.999) TCGA-DU-6392-01 11 1269149 1269149 C T MUC5B Missense_Mutation p.T3680M 0.32 unknown(0) TCGA-DU-6392-01 11 1271537 1271537 C T MUC5B Missense_Mutation p.A4476V 0.38 benign(0.042) TCGA-DU-6392-01 11 1272808 1272808 G A MUC5B Missense_Mutation p.V4900M 0.33 unknown(0) TCGA-DU-6392-01 11 1275507 1275507 G A MUC5B Missense_Mutation p.A5135T 0.50 unknown(0) TCGA-DU-6392-01 11 1279402 1279402 G A MUC5B Silent p.E5508E 0.40 TCGA-DU-6392-01 11 1281235 1281235 G A MUC5B Missense_Mutation p.V5615M 0.37 unknown(0) TCGA-DU-6392-01 11 128350152 128350152 G A ETS1 Missense_Mutation p.R353W 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 11 128426321 128426321 G A ETS1 Missense_Mutation p.P27S 0.55 tolerated_low_confidence(0.2) benign(0.003) TCGA-DU-6392-01 11 128675297 128675297 G A FLI1 Missense_Mutation p.G231D 0.18 tolerated(0.19) benign(0.046) TCGA-DU-6392-01 11 128680652 128680652 G A FLI1 Silent p.S376S 0.59 TCGA-DU-6392-01 11 128774420 128774420 C T C11orf45 Silent p.T14T 0.57 TCGA-DU-6392-01 11 128781290 128781290 G A KCNJ5 Missense_Mutation p.R41H 0.36 tolerated(0.28) benign(0.003) TCGA-DU-6392-01 11 128781759 128781759 G A KCNJ5 Silent p.A197A 0.48 TCGA-DU-6392-01 11 128781940 128781940 A G KCNJ5 Missense_Mutation p.N258D 0.33 tolerated(0.48) probably_damaging(0.91) TCGA-DU-6392-01 11 128839787 128839787 C T ARHGAP32 Missense_Mutation p.R1760H 0.49 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 11 12901223 12901223 T C TEAD1 Intron 0.33 TCGA-DU-6392-01 11 12904597 12904597 T C TEAD1 Silent p.G208G 0.32 TCGA-DU-6392-01 11 12904600 12904600 C T TEAD1 Silent p.R209R 0.32 TCGA-DU-6392-01 11 12923603 12923603 C A TEAD1 Silent p.G272G 0.08 TCGA-DU-6392-01 11 12923629 12923629 C A TEAD1 Missense_Mutation p.P281H 0.07 deleterious(0.01) probably_damaging(0.974) TCGA-DU-6392-01 11 129321276 129321276 G A BARX2 Silent p.S273S 0.36 TCGA-DU-6392-01 11 129739838 129739838 A G NFRKB Missense_Mutation p.S1053P 0.20 tolerated_low_confidence(0.13) benign(0.051) TCGA-DU-6392-01 11 129772399 129772399 A G PRDM10 Silent p.L1098L 0.28 TCGA-DU-6392-01 11 129787027 129787027 C T PRDM10 Missense_Mutation p.D778N 0.40 tolerated(0.19) possibly_damaging(0.794) TCGA-DU-6392-01 11 129788582 129788582 C A PRDM10 Missense_Mutation p.R693M 0.07 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 11 129800970 129800970 C T PRDM10 Missense_Mutation p.V491M 0.41 tolerated(0.13) benign(0.111) TCGA-DU-6392-01 11 129805097 129805097 C A PRDM10 Missense_Mutation p.E352D 0.09 deleterious(0.04) probably_damaging(0.987) TCGA-DU-6392-01 11 129827806 129827806 C A PRDM10 Splice_Site p.X24_splice 0.16 TCGA-DU-6392-01 11 129996708 129996708 C T APLP2 Missense_Mutation p.R402C 0.33 deleterious(0) probably_damaging(0.971) TCGA-DU-6392-01 11 130060400 130060400 C T ST14 Missense_Mutation p.T229I 0.21 deleterious(0.02) benign(0.392) TCGA-DU-6392-01 11 130068297 130068297 C T ST14 Silent p.S518S 0.19 TCGA-DU-6392-01 11 130079624 130079624 G A ST14 Missense_Mutation p.S825N 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 130131194 130131194 G T ZBTB44 Missense_Mutation p.P192H 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 130284492 130284492 C T ADAMTS8 Silent p.P500P 0.24 TCGA-DU-6392-01 11 130331475 130331475 A G ADAMTS15 Missense_Mutation p.D350G 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 130784436 130784436 C A SNX19 Missense_Mutation p.A467S 0.31 tolerated(0.38) benign(0.169) TCGA-DU-6392-01 11 130785000 130785000 C T SNX19 Missense_Mutation p.A279T 0.41 tolerated(0.21) benign(0.394) TCGA-DU-6392-01 11 132290060 132290060 G A OPCML 3'UTR 0.11 TCGA-DU-6392-01 11 133789708 133789708 C T IGSF9B Silent p.T1304T 0.48 TCGA-DU-6392-01 11 133790517 133790517 G A IGSF9B Missense_Mutation p.R1035C 0.38 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-DU-6392-01 11 133791002 133791002 C T IGSF9B Missense_Mutation p.R873H 0.43 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 133799568 133799568 A C IGSF9B Silent p.V543V 0.37 TCGA-DU-6392-01 11 134009793 134009793 G T JAM3 Missense_Mutation p.V42L 0.37 tolerated(0.32) benign(0.213) TCGA-DU-6392-01 11 134023044 134023044 G T NCAPD3 Missense_Mutation p.P1460H 0.08 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 11 134130998 134130998 G A ACAD8 Missense_Mutation p.A256T 0.38 tolerated(0.22) benign(0.001) TCGA-DU-6392-01 11 134179596 134179596 C T GLB1L3 Silent p.N346N 0.33 TCGA-DU-6392-01 11 134239698 134239698 G T GLB1L2 Splice_Site p.X343_splice 0.52 TCGA-DU-6392-01 11 134239705 134239705 A C GLB1L2 Missense_Mutation p.D345A 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 11 13424821 13424821 A C BTBD10 Missense_Mutation p.I337M 0.09 deleterious(0.02) benign(0.39) TCGA-DU-6392-01 11 13743357 13743357 C T FAR1 Missense_Mutation p.T403I 0.38 deleterious(0.04) benign(0.396) TCGA-DU-6392-01 11 14490987 14490987 C G COPB1 Missense_Mutation p.L620F 0.13 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 11 14529285 14529285 C A PSMA1 Missense_Mutation p.D224Y 0.35 deleterious(0) possibly_damaging(0.786) TCGA-DU-6392-01 11 1464847 1464847 C T BRSK2 Silent p.D300D 0.41 TCGA-DU-6392-01 11 14852272 14852272 A G PDE3B Silent p.E612E 0.49 TCGA-DU-6392-01 11 15098968 15098968 C T CALCB Missense_Mutation p.R121C 0.41 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 11 15170751 15170751 G A INSC Missense_Mutation p.D58N 0.27 tolerated_low_confidence(0.07) benign(0.092) TCGA-DU-6392-01 11 16007927 16007927 G T SOX6 Missense_Mutation p.P649H 0.42 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 1619040 1619040 G T KRTAP5-2 Nonsense_Mutation p.C147* 0.19 TCGA-DU-6392-01 11 16340160 16340160 G A SOX6 Nonsense_Mutation p.R93* 0.09 TCGA-DU-6392-01 11 1643315 1643315 G T KRTAP5-4 Nonsense_Mutation p.C3* 0.40 TCGA-DU-6392-01 11 1651160 1651160 C T KRTAP5-5 Silent p.G30G 0.41 TCGA-DU-6392-01 11 1651250 1651250 C G KRTAP5-5 Silent p.S60S 0.25 TCGA-DU-6392-01 11 16837804 16837804 G A PLEKHA7 Missense_Mutation p.S625F 0.32 tolerated(0.18) benign(0.27) TCGA-DU-6392-01 11 16838749 16838749 G A PLEKHA7 Silent p.P488P 0.33 TCGA-DU-6392-01 11 17113777 17113777 C T PIK3C2A Missense_Mutation p.A1500T 0.44 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 11 17158125 17158125 G T PIK3C2A Silent p.I584I 0.44 TCGA-DU-6392-01 11 17190742 17190742 C A PIK3C2A Nonsense_Mutation p.E183* 0.36 TCGA-DU-6392-01 11 17190992 17190992 T C PIK3C2A Silent p.E99E 0.06 TCGA-DU-6392-01 11 17317743 17317743 C T NUCB2 Silent p.D79D 0.11 TCGA-DU-6392-01 11 17323300 17323300 C T NUCB2 Silent p.L88L 0.34 TCGA-DU-6392-01 11 17414591 17414591 G T ABCC8 Missense_Mutation p.L1565M 0.14 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 11 17452370 17452370 G T ABCC8 Missense_Mutation p.A603D 0.31 deleterious(0) probably_damaging(0.961) TCGA-DU-6392-01 11 17470208 17470208 T C ABCC8 Missense_Mutation p.Y396C 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 11 17544785 17544785 G A USH1C Silent p.S283S 0.43 TCGA-DU-6392-01 11 17793591 17793591 G A KCNC1 Missense_Mutation p.R317H 0.47 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 18042548 18042548 G A TPH1 Missense_Mutation p.P442L 0.44 tolerated_low_confidence(0.69) benign(0) TCGA-DU-6392-01 11 18054868 18054868 C T TPH1 Missense_Mutation p.A119T 0.29 tolerated(0.4) possibly_damaging(0.731) TCGA-DU-6392-01 11 18110971 18110971 C T SAAL1 Missense_Mutation p.A226T 0.48 tolerated(0.71) benign(0.005) TCGA-DU-6392-01 11 18158969 18158969 C A MRGPRX3 Missense_Mutation p.L74I 0.46 deleterious(0.03) possibly_damaging(0.893) TCGA-DU-6392-01 11 18158979 18158979 G A MRGPRX3 Missense_Mutation p.S77N 0.09 deleterious(0.01) possibly_damaging(0.808) TCGA-DU-6392-01 11 18194963 18194963 T C MRGPRX4 Missense_Mutation p.Y54H 0.37 deleterious(0) benign(0.058) TCGA-DU-6392-01 11 18195332 18195332 G T MRGPRX4 Missense_Mutation p.D177Y 0.07 deleterious(0.03) benign(0.128) TCGA-DU-6392-01 11 18267006 18267006 G A SAA2 Missense_Mutation p.A96V 0.12 deleterious(0) possibly_damaging(0.897) TCGA-DU-6392-01 11 18267031 18267031 C A SAA2 Missense_Mutation p.G88C 0.28 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 11 18313021 18313021 G T HPS5 Missense_Mutation p.S803Y 0.33 deleterious(0.04) benign(0.123) TCGA-DU-6392-01 11 18313457 18313457 C A HPS5 Missense_Mutation p.G658C 0.07 deleterious(0.01) possibly_damaging(0.547) TCGA-DU-6392-01 11 18327847 18327847 C T HPS5 Missense_Mutation p.G220E 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 18379514 18379514 G A GTF2H1 Missense_Mutation p.A426T 0.40 tolerated(0.17) benign(0.007) TCGA-DU-6392-01 11 1857227 1857227 G A SYT8 Intron 0.31 TCGA-DU-6392-01 11 18735622 18735622 C T IGSF22 Silent p.T624T 0.32 TCGA-DU-6392-01 11 18735840 18735840 G T IGSF22 Silent p.A594A 0.10 TCGA-DU-6392-01 11 18736140 18736140 G A IGSF22 Silent p.S521S 0.09 TCGA-DU-6392-01 11 18956162 18956162 C T MRGPRX1 Missense_Mutation p.R57H 0.32 tolerated(0.4) benign(0.013) TCGA-DU-6392-01 11 19076931 19076931 C T MRGPRX2 3'UTR 0.29 TCGA-DU-6392-01 11 19167744 19167744 C T ZDHHC13 Nonsense_Mutation p.R64* 0.40 TCGA-DU-6392-01 11 19173709 19173709 G T ZDHHC13 Nonsense_Mutation p.E197* 0.34 TCGA-DU-6392-01 11 19246308 19246308 G A E2F8 Missense_Mutation p.T834I 0.12 tolerated(0.51) benign(0.002) TCGA-DU-6392-01 11 19247037 19247037 G T E2F8 Missense_Mutation p.L718I 0.40 tolerated(0.09) possibly_damaging(0.529) TCGA-DU-6392-01 11 19256341 19256341 C A E2F8 Missense_Mutation p.G239V 0.42 tolerated(0.15) probably_damaging(0.944) TCGA-DU-6392-01 11 19954923 19954923 C A NAV2 Missense_Mutation p.P401H 0.07 deleterious(0.02) possibly_damaging(0.548) TCGA-DU-6392-01 11 20122653 20122653 C T NAV2 Nonsense_Mutation p.R2177* 0.41 TCGA-DU-6392-01 11 20124899 20124899 C T NAV2 Silent p.H2231H 0.31 TCGA-DU-6392-01 11 20417380 20417380 A G PRMT3 Silent p.V144V 0.38 TCGA-DU-6392-01 11 20515715 20515715 C T PRMT3 Silent p.V467V 0.37 TCGA-DU-6392-01 11 20658807 20658807 C A SLC6A5 Nonsense_Mutation p.C609* 0.12 TCGA-DU-6392-01 11 20699541 20699541 A G NELL1 Missense_Mutation p.N40S 0.32 deleterious(0.03) possibly_damaging(0.472) TCGA-DU-6392-01 11 20939758 20939758 A G NELL1 Missense_Mutation p.M212V 0.34 tolerated(0.5) benign(0.053) TCGA-DU-6392-01 11 2154381 2154381 G A IGF2 Missense_Mutation p.R183C 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 2161436 2161436 T C IGF2 Missense_Mutation p.I31V 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.785) TCGA-DU-6392-01 11 2185527 2185527 C T TH Missense_Mutation p.R508H 0.57 tolerated(0.28) benign(0.008) TCGA-DU-6392-01 11 22249017 22249017 G A ANO5 Missense_Mutation p.S178N 0.46 tolerated(0.73) benign(0) TCGA-DU-6392-01 11 22281285 22281285 T G ANO5 Missense_Mutation p.M543R 0.20 deleterious(0.02) benign(0.125) TCGA-DU-6392-01 11 22396404 22396404 C T SLC17A6 Missense_Mutation p.T382M 0.30 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 11 2324157 2324157 G T TSPAN32 Missense_Mutation p.E50D 0.17 tolerated(0.34) benign(0.137) TCGA-DU-6392-01 11 2334930 2334930 C T TSPAN32 Missense_Mutation p.A134V 0.30 tolerated(0.33) probably_damaging(0.919) TCGA-DU-6392-01 11 2411695 2411695 G T CD81 Missense_Mutation p.Q40H 0.09 deleterious(0.02) benign(0.126) TCGA-DU-6392-01 11 2427272 2427272 G A TRPM5 Missense_Mutation p.R1101C 0.23 deleterious(0) probably_damaging(0.941) TCGA-DU-6392-01 11 26556046 26556046 C T ANO3 Nonsense_Mutation p.R305* 0.28 TCGA-DU-6392-01 11 26582625 26582625 C T MUC15 Missense_Mutation p.R358H 0.38 deleterious(0.05) benign(0.001) TCGA-DU-6392-01 11 26732876 26732876 A T SLC5A12 Silent p.A145A 0.33 TCGA-DU-6392-01 11 27389979 27389979 G A LGR4 Missense_Mutation p.A764V 0.47 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 11 27390141 27390141 A G LGR4 Missense_Mutation p.L710S 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 27390580 27390580 A C LGR4 Missense_Mutation p.F564V 0.42 deleterious(0.01) probably_damaging(0.968) TCGA-DU-6392-01 11 2937892 2937892 C A SLC22A18 Missense_Mutation p.L193M 0.39 deleterious(0.04) benign(0.23) TCGA-DU-6392-01 11 2981014 2981014 A C NAP1L4 Missense_Mutation p.I244M 0.28 deleterious(0) probably_damaging(0.965) TCGA-DU-6392-01 11 30033097 30033097 C T KCNA4 Missense_Mutation p.V377I 0.12 tolerated(0.69) possibly_damaging(0.542) TCGA-DU-6392-01 11 3050724 3050724 G T CARS Intron 0.16 TCGA-DU-6392-01 11 30557550 30557550 C A MPPED2 Missense_Mutation p.D101Y 0.20 deleterious(0.01) possibly_damaging(0.838) TCGA-DU-6392-01 11 30914468 30914468 G A DCDC1 Missense_Mutation p.P1657L 0.31 tolerated_low_confidence(0.27) benign(0) TCGA-DU-6392-01 11 30915926 30915926 G A DCDC1 Nonsense_Mutation p.R1588* 0.14 TCGA-DU-6392-01 11 31805058 31805058 C T ELP4 Missense_Mutation p.H421Y 0.09 deleterious(0.01) probably_damaging(0.937) TCGA-DU-6392-01 11 32421585 32421585 C T WT1 Missense_Mutation p.S336N 0.35 tolerated_low_confidence(0.14) benign(0.053) TCGA-DU-6392-01 11 32637485 32637485 C A CCDC73 Splice_Site p.X459_splice 0.27 TCGA-DU-6392-01 11 32955686 32955686 C T QSER1 Missense_Mutation p.S832L 0.35 deleterious(0) probably_damaging(0.935) TCGA-DU-6392-01 11 33080616 33080616 T G TCP11L1 Missense_Mutation p.F250L 0.07 deleterious(0) possibly_damaging(0.861) TCGA-DU-6392-01 11 33118430 33118430 C T CSTF3 Missense_Mutation p.R408H 0.29 deleterious(0.04) benign(0.213) TCGA-DU-6392-01 11 33163271 33163271 C T CSTF3 Missense_Mutation p.R56H 0.33 tolerated(0.16) benign(0.045) TCGA-DU-6392-01 11 33182907 33182907 G A CSTF3 5'UTR 0.32 TCGA-DU-6392-01 11 33373380 33373380 G A HIPK3 Missense_Mutation p.A1012T 0.50 tolerated(0.34) benign(0.001) TCGA-DU-6392-01 11 33566375 33566375 A G KIAA1549L Missense_Mutation p.K649E 0.36 deleterious_low_confidence(0.02) benign(0.424) TCGA-DU-6392-01 11 33792380 33792380 G A FBXO3 Intron 0.39 TCGA-DU-6392-01 11 33886303 33886303 C A LMO2 Missense_Mutation p.Q103H 0.25 tolerated(0.08) benign(0.081) TCGA-DU-6392-01 11 34160752 34160752 A G NAT10 Silent p.G742G 0.09 TCGA-DU-6392-01 11 34175835 34175835 C T ABTB2 Missense_Mutation p.V953M 0.40 deleterious(0) probably_damaging(0.97) TCGA-DU-6392-01 11 34218941 34218941 C T ABTB2 Missense_Mutation p.R392Q 0.23 deleterious(0.02) possibly_damaging(0.755) TCGA-DU-6392-01 11 3427880 3427880 C A TSSC2 RNA 0.69 TCGA-DU-6392-01 11 34470767 34470767 G A CAT Missense_Mutation p.G32D 0.43 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 34489941 34489941 C T CAT Missense_Mutation p.A478V 0.41 tolerated(0.15) benign(0.02) TCGA-DU-6392-01 11 34515065 34515065 C T ELF5 Missense_Mutation p.E116K 0.43 tolerated(0.22) possibly_damaging(0.507) TCGA-DU-6392-01 11 34680413 34680413 G T EHF Missense_Mutation p.D302Y 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 35198194 35198194 C T CD44 Missense_Mutation p.T47M 0.33 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 11 35302462 35302462 C T SLC1A2 Missense_Mutation p.G458D 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 35314060 35314060 G A SLC1A2 Missense_Mutation p.P289S 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 35339032 35339032 G A SLC1A2 Nonsense_Mutation p.R17* 0.09 TCGA-DU-6392-01 11 35453854 35453854 C T PAMR1 3'UTR 0.47 TCGA-DU-6392-01 11 35454022 35454022 C T PAMR1 Missense_Mutation p.R699H 0.44 tolerated(0.16) benign(0.008) TCGA-DU-6392-01 11 36250939 36250939 G T LDLRAD3 Nonsense_Mutation p.E344* 0.37 TCGA-DU-6392-01 11 36296317 36296317 T G COMMD9 Missense_Mutation p.Q154H 0.11 deleterious(0.01) possibly_damaging(0.748) TCGA-DU-6392-01 11 36472881 36472881 G A PRR5L Silent p.T236T 0.30 TCGA-DU-6392-01 11 36511342 36511342 G A TRAF6 3'UTR 0.47 TCGA-DU-6392-01 11 36511763 36511763 C T TRAF6 Silent p.P398P 0.19 TCGA-DU-6392-01 11 36512081 36512081 G A TRAF6 Silent p.V292V 0.33 TCGA-DU-6392-01 11 36596598 36596598 A G RAG1 Missense_Mutation p.R582G 0.08 deleterious_low_confidence(0) benign(0.084) TCGA-DU-6392-01 11 3660958 3660958 C A ART5 Missense_Mutation p.R234I 0.09 tolerated(0.17) benign(0.285) TCGA-DU-6392-01 11 3681427 3681427 G A ART1 Silent p.G226G 0.51 TCGA-DU-6392-01 11 3681528 3681528 G A ART1 Missense_Mutation p.G260D 0.37 tolerated(0.08) benign(0.267) TCGA-DU-6392-01 11 3697536 3697536 G A NUP98 Silent p.S1752S 0.36 TCGA-DU-6392-01 11 3704480 3704480 G A NUP98 Missense_Mutation p.A1623V 0.36 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 11 373108 373108 C T B4GALNT4 Missense_Mutation p.A176V 0.45 deleterious(0.02) possibly_damaging(0.701) TCGA-DU-6392-01 11 3789871 3789871 C A NUP98 Missense_Mutation p.Q296H 0.07 deleterious(0.02) possibly_damaging(0.718) TCGA-DU-6392-01 11 380019 380019 G A B4GALNT4 Missense_Mutation p.R881Q 0.26 deleterious(0.02) unknown(0) TCGA-DU-6392-01 11 396684 396684 C A PKP3 Silent p.T103T 0.43 TCGA-DU-6392-01 11 3988848 3988848 G A STIM1 Missense_Mutation p.R69H 0.43 deleterious(0.05) possibly_damaging(0.505) TCGA-DU-6392-01 11 40135961 40135961 G A LRRC4C Nonsense_Mutation p.R628* 0.31 TCGA-DU-6392-01 11 40137065 40137065 G A LRRC4C Missense_Mutation p.R260W 0.43 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 11 40137233 40137233 G T LRRC4C Missense_Mutation p.L204I 0.30 deleterious(0.01) probably_damaging(0.969) TCGA-DU-6392-01 11 408207 408207 C A SIGIRR Splice_Site p.X69_splice 0.36 TCGA-DU-6392-01 11 4148305 4148305 G A RRM1 Missense_Mutation p.G504E 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-6392-01 11 4148393 4148393 A C RRM1 Missense_Mutation p.E533D 0.44 deleterious_low_confidence(0.01) benign(0.192) TCGA-DU-6392-01 11 428179 428179 C T ANO9 Missense_Mutation p.E415K 0.37 deleterious(0.02) probably_damaging(0.989) TCGA-DU-6392-01 11 43423045 43423045 C T TTC17 Silent p.C423C 0.15 TCGA-DU-6392-01 11 43465045 43465045 C T TTC17 Missense_Mutation p.R808W 0.37 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 4388578 4388578 A G OR52B4 3'UTR 0.15 TCGA-DU-6392-01 11 44080142 44080142 G A ACCSL Missense_Mutation p.R506H 0.34 tolerated(0.2) benign(0.049) TCGA-DU-6392-01 11 44104852 44104852 C T ACCS Silent p.D415D 0.13 TCGA-DU-6392-01 11 4411432 4411432 C T TRIM21 Missense_Mutation p.A70T 0.44 deleterious(0.03) benign(0.382) TCGA-DU-6392-01 11 44219462 44219462 C T EXT2 Silent p.Y496Y 0.29 TCGA-DU-6392-01 11 44255770 44255770 G A EXT2 Missense_Mutation p.V671I 0.59 tolerated(0.76) benign(0.004) TCGA-DU-6392-01 11 45203856 45203856 G A PRDM11 Missense_Mutation p.R60H 0.36 tolerated(0.31) benign(0.046) TCGA-DU-6392-01 11 45245842 45245842 C A PRDM11 Missense_Mutation p.L273I 0.37 tolerated_low_confidence(0.11) possibly_damaging(0.516) TCGA-DU-6392-01 11 45265741 45265741 C A SYT13 Missense_Mutation p.Q381H 0.39 deleterious(0.01) benign(0.142) TCGA-DU-6392-01 11 45827637 45827637 C T SLC35C1 Silent p.A95A 0.35 TCGA-DU-6392-01 11 45926110 45926110 C T MAPK8IP1 Nonsense_Mutation p.Q591* 0.41 TCGA-DU-6392-01 11 45927972 45927972 C A MAPK8IP1 3'UTR 0.38 TCGA-DU-6392-01 11 45935397 45935397 C T PEX16 Missense_Mutation p.R287H 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 45935911 45935911 T G PEX16 Missense_Mutation p.E217A 0.30 tolerated(0.07) possibly_damaging(0.804) TCGA-DU-6392-01 11 45937384 45937384 G T PEX16 Missense_Mutation p.L77M 0.36 tolerated(0.11) possibly_damaging(0.847) TCGA-DU-6392-01 11 45949768 45949768 G A GYLTL1B Missense_Mutation p.A599T 0.13 tolerated(0.24) benign(0.02) TCGA-DU-6392-01 11 46393986 46393986 G T DGKZ Missense_Mutation p.K500N 0.42 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 11 46407677 46407677 C T CHRM4 Missense_Mutation p.R144H 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 46418964 46418964 G A AMBRA1 3'UTR 0.26 TCGA-DU-6392-01 11 46564140 46564140 C T AMBRA1 Missense_Mutation p.G386E 0.37 tolerated_low_confidence(0.1) probably_damaging(1) TCGA-DU-6392-01 11 46637623 46637623 C T HARBI1 Silent p.A55A 0.35 TCGA-DU-6392-01 11 46726700 46726700 C T ZNF408 Missense_Mutation p.R484W 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 4674065 4674065 G T OR51E1 Missense_Mutation p.Q103H 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 46773018 46773018 G T CKAP5 Missense_Mutation p.L1734M 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-DU-6392-01 11 46791594 46791594 G A CKAP5 Missense_Mutation p.P1081S 0.07 deleterious(0.03) benign(0.309) TCGA-DU-6392-01 11 46812059 46812059 T A CKAP5 Missense_Mutation p.K575N 0.35 deleterious(0.01) possibly_damaging(0.501) TCGA-DU-6392-01 11 46895013 46895013 G A LRP4 Missense_Mutation p.A1454V 0.50 tolerated(1) benign(0.002) TCGA-DU-6392-01 11 46903448 46903448 C T LRP4 Missense_Mutation p.M873I 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-DU-6392-01 11 46911497 46911497 G A LRP4 Missense_Mutation p.A697V 0.43 tolerated(0.27) benign(0.045) TCGA-DU-6392-01 11 46920468 46920468 G A LRP4 Silent p.D221D 0.50 TCGA-DU-6392-01 11 46921053 46921053 G A LRP4 Silent p.D144D 0.19 TCGA-DU-6392-01 11 46921489 46921489 T G LRP4 Missense_Mutation p.N119H 0.12 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 11 4703653 4703653 G T OR51E2 Missense_Mutation p.L97I 0.12 tolerated(0.12) benign(0.003) TCGA-DU-6392-01 11 47074068 47074068 C T C11orf49 Silent p.G93G 0.46 TCGA-DU-6392-01 11 47201080 47201080 T C PACSIN3 Missense_Mutation p.M221V 0.08 deleterious(0.01) possibly_damaging(0.791) TCGA-DU-6392-01 11 47202229 47202229 C A PACSIN3 Missense_Mutation p.G75V 0.20 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 47256422 47256422 C T DDB2 Missense_Mutation p.R273C 0.35 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 11 47282170 47282170 G A NR1H3 Missense_Mutation p.R148H 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 47282815 47282815 C T NR1H3 Missense_Mutation p.R175C 0.48 deleterious(0) possibly_damaging(0.836) TCGA-DU-6392-01 11 47350770 47350770 G A MADD 3'UTR 0.15 TCGA-DU-6392-01 11 47493748 47493748 G T CELF1 3'UTR 0.06 TCGA-DU-6392-01 11 47493832 47493832 G A CELF1 Missense_Mutation p.R497W 0.52 deleterious(0.02) benign(0.277) TCGA-DU-6392-01 11 47593203 47593203 T C PTPMT1 3'UTR 0.20 TCGA-DU-6392-01 11 47599055 47599055 G T KBTBD4 Missense_Mutation p.A182D 0.39 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6392-01 11 47647241 47647241 G T MTCH2 Missense_Mutation p.A245D 0.45 deleterious(0) possibly_damaging(0.821) TCGA-DU-6392-01 11 47707455 47707455 G A AGBL2 Missense_Mutation p.A593V 0.36 tolerated(0.08) benign(0.344) TCGA-DU-6392-01 11 47767694 47767694 G T FNBP4 Missense_Mutation p.L387I 0.12 tolerated(0.12) benign(0.015) TCGA-DU-6392-01 11 47819386 47819386 G A NUP160 Silent p.H1078H 0.42 TCGA-DU-6392-01 11 4790544 4790544 A C OR51F1 Missense_Mutation p.L202V 0.49 deleterious(0) possibly_damaging(0.896) TCGA-DU-6392-01 11 4825600 4825600 G A OR52R1 Missense_Mutation p.A4V 0.44 tolerated(0.08) benign(0.002) TCGA-DU-6392-01 11 4842974 4842974 G T OR51F2 Missense_Mutation p.G120V 0.07 tolerated(0.57) benign(0.295) TCGA-DU-6392-01 11 4843361 4843361 G A OR51F2 Missense_Mutation p.R249Q 0.38 tolerated(0.38) benign(0.005) TCGA-DU-6392-01 11 48511062 48511062 T C OR4A47 Missense_Mutation p.S240P 0.45 deleterious_low_confidence(0.01) benign(0.35) TCGA-DU-6392-01 11 49192795 49192795 G T FOLH1 Missense_Mutation p.S420R 0.30 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 11 49207246 49207246 A G FOLH1 Silent p.P267P 0.19 TCGA-DU-6392-01 11 49207305 49207305 G A FOLH1 Missense_Mutation p.L248F 0.30 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 11 4936683 4936683 G T OR51G2 Missense_Mutation p.L71M 0.24 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 49598030 49598030 G T RP11-707M1.1 RNA 0.18 TCGA-DU-6392-01 11 4967870 4967870 C T OR51A4 Missense_Mutation p.S154N 0.27 tolerated(0.2) benign(0.06) TCGA-DU-6392-01 11 4976944 4976944 G T MMP26 Intron 0.08 TCGA-DU-6392-01 11 49805585 49805585 G A RP11-707M1.1 RNA 0.35 TCGA-DU-6392-01 11 49831886 49831886 G T RP11-707M1.1 RNA 0.11 TCGA-DU-6392-01 11 499119 499119 C T RNH1 Silent p.P170P 0.25 TCGA-DU-6392-01 11 5080059 5080059 G A OR52E2 Nonsense_Mutation p.R267* 0.61 TCGA-DU-6392-01 11 5080122 5080122 C T OR52E2 Missense_Mutation p.V246M 0.12 deleterious(0.02) probably_damaging(0.987) TCGA-DU-6392-01 11 51411583 51411583 A C OR4A5 Missense_Mutation p.F271L 0.56 deleterious_low_confidence(0.02) benign(0.033) TCGA-DU-6392-01 11 5153502 5153502 C T OR52A5 Missense_Mutation p.R124H 0.41 deleterious(0.01) probably_damaging(0.968) TCGA-DU-6392-01 11 5264463 5264463 G A HBG1 3'Flank 0.42 TCGA-DU-6392-01 11 55037974 55037974 A G TRIM48 3'UTR 0.15 TCGA-DU-6392-01 11 55064983 55064983 A G TRIM51HP RNA 0.09 TCGA-DU-6392-01 11 55065578 55065578 C T TRIM51HP RNA 0.51 TCGA-DU-6392-01 11 55065673 55065673 G T TRIM51HP RNA 0.09 TCGA-DU-6392-01 11 55110872 55110872 C T OR4A16 Missense_Mutation p.L66F 0.06 tolerated_low_confidence(1) benign(0.02) TCGA-DU-6392-01 11 55321882 55321882 C T OR4C15 Missense_Mutation p.L34F 0.31 tolerated_low_confidence(0.53) possibly_damaging(0.765) TCGA-DU-6392-01 11 55321995 55321995 G T OR4C15 Missense_Mutation p.Q71H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.8) TCGA-DU-6392-01 11 554168 554168 C T LRRC56 Silent p.R507R 0.29 TCGA-DU-6392-01 11 55541189 55541189 A G OR5D13 Silent p.R92R 0.13 TCGA-DU-6392-01 11 55541339 55541339 C A OR5D13 Silent p.L142L 0.07 TCGA-DU-6392-01 11 55541585 55541585 C T OR5D13 Silent p.F224F 0.23 TCGA-DU-6392-01 11 55563455 55563455 C T OR5D14 Missense_Mutation p.L142F 0.46 tolerated(0.05) possibly_damaging(0.464) TCGA-DU-6392-01 11 55595089 55595089 A G OR5L2 Missense_Mutation p.Y132C 0.27 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 55658726 55658726 A T TRIM51 Missense_Mutation p.E326V 0.07 tolerated(0.25) benign(0.104) TCGA-DU-6392-01 11 55659141 55659141 C A TRIM51 3'UTR 0.15 TCGA-DU-6392-01 11 55681569 55681569 A C OR5W2 Missense_Mutation p.F164V 0.11 deleterious(0) possibly_damaging(0.68) TCGA-DU-6392-01 11 55761475 55761475 C T OR5F1 Silent p.G209G 0.30 TCGA-DU-6392-01 11 55761668 55761668 G T OR5F1 Missense_Mutation p.A145E 0.47 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 11 557696 557696 C A C11orf35 Intron 0.52 TCGA-DU-6392-01 11 55861327 55861327 G T OR8I2 Missense_Mutation p.A182S 0.09 deleterious(0.03) possibly_damaging(0.861) TCGA-DU-6392-01 11 558622 558622 C T C11orf35 Silent p.P101P 0.38 TCGA-DU-6392-01 11 55872744 55872744 A T OR8H2 Missense_Mutation p.T76S 0.36 tolerated(1) benign(0.027) TCGA-DU-6392-01 11 55873189 55873189 C T OR8H2 Missense_Mutation p.T224I 0.29 deleterious(0.02) possibly_damaging(0.9) TCGA-DU-6392-01 11 56128531 56128531 C A OR8J1 Missense_Mutation p.T270N 0.42 deleterious(0) possibly_damaging(0.864) TCGA-DU-6392-01 11 56143597 56143597 C T OR8U1 Silent p.L166L 0.24 TCGA-DU-6392-01 11 56237886 56237886 G A OR5M3 Missense_Mutation p.L30F 0.38 deleterious(0.04) benign(0.221) TCGA-DU-6392-01 11 56258291 56258291 G A OR5M8 Silent p.L186L 0.10 TCGA-DU-6392-01 11 56756428 56756428 C A OR5AK2 Missense_Mutation p.L14I 0.51 deleterious(0.01) possibly_damaging(0.899) TCGA-DU-6392-01 11 5688922 5688922 T G TRIM5 Missense_Mutation p.K255T 0.34 deleterious(0.05) benign(0.066) TCGA-DU-6392-01 11 56949379 56949379 C T LRRC55 Silent p.S4S 0.19 TCGA-DU-6392-01 11 56950053 56950053 C T LRRC55 Missense_Mutation p.P229L 0.44 deleterious(0) possibly_damaging(0.67) TCGA-DU-6392-01 11 57003773 57003773 G A APLNR Missense_Mutation p.R236C 0.12 deleterious(0.01) probably_damaging(0.969) TCGA-DU-6392-01 11 57077271 57077271 C T TNKS1BP1 Missense_Mutation p.A972T 0.24 tolerated(0.45) benign(0.001) TCGA-DU-6392-01 11 57077411 57077411 T C TNKS1BP1 Missense_Mutation p.E925G 0.07 tolerated(0.38) benign(0.311) TCGA-DU-6392-01 11 57077836 57077836 C A TNKS1BP1 Silent p.G783G 0.11 TCGA-DU-6392-01 11 57094960 57094960 C A SSRP1 Missense_Mutation p.R604M 0.10 deleterious(0) possibly_damaging(0.69) TCGA-DU-6392-01 11 57182424 57182424 C T SLC43A3 Missense_Mutation p.G309S 0.17 tolerated(0.72) benign(0.006) TCGA-DU-6392-01 11 5719631 5719631 G A TRIM22 Silent p.L202L 0.48 TCGA-DU-6392-01 11 57235240 57235240 C T RTN4RL2 Nonsense_Mutation p.R64* 0.41 TCGA-DU-6392-01 11 57256721 57256721 T C SLC43A1 Intron 0.38 TCGA-DU-6392-01 11 57258700 57258700 G A SLC43A1 Missense_Mutation p.A397V 0.28 tolerated(0.27) benign(0.026) TCGA-DU-6392-01 11 57268692 57268692 C T SLC43A1 Missense_Mutation p.A89T 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-DU-6392-01 11 57296133 57296133 C T TIMM10 3'UTR 0.62 TCGA-DU-6392-01 11 57296339 57296339 C A TIMM10 Nonsense_Mutation p.E42* 0.20 TCGA-DU-6392-01 11 57319747 57319747 G A UBE2L6 3'UTR 0.09 TCGA-DU-6392-01 11 57466563 57466563 G A ZDHHC5 Missense_Mutation p.R552H 0.46 tolerated(0.17) benign(0.001) TCGA-DU-6392-01 11 57569568 57569568 C T CTNND1 Silent p.D440D 0.29 TCGA-DU-6392-01 11 57571145 57571145 C T CTNND1 Silent p.D491D 0.32 TCGA-DU-6392-01 11 57577605 57577605 A T CTNND1 Silent p.R820R 0.19 TCGA-DU-6392-01 11 57958284 57958284 G A OR9Q2 Missense_Mutation p.A108T 0.25 deleterious(0.03) benign(0.341) TCGA-DU-6392-01 11 57958410 57958410 G A OR9Q2 Missense_Mutation p.V150I 0.38 tolerated(0.59) benign(0.014) TCGA-DU-6392-01 11 57995808 57995808 G A OR10Q1 Silent p.N180N 0.51 TCGA-DU-6392-01 11 57996345 57996345 C T OR10Q1 Translation_Start_Site p.M1? 0.14 tolerated_low_confidence(0.11) benign(0.01) TCGA-DU-6392-01 11 58035078 58035078 G T OR10W1 Missense_Mutation p.L85I 0.32 tolerated(0.08) benign(0.237) TCGA-DU-6392-01 11 58170821 58170821 A G OR5B3 Missense_Mutation p.L21P 0.12 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-DU-6392-01 11 58190027 58190027 C T OR5B2 Silent p.L236L 0.08 TCGA-DU-6392-01 11 58331658 58331658 G A LPXN Missense_Mutation p.T68I 0.21 tolerated(0.08) benign(0.013) TCGA-DU-6392-01 11 58379786 58379786 G A ZFP91 Missense_Mutation p.R298H 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-DU-6392-01 11 58380261 58380261 G A ZFP91 Missense_Mutation p.R312H 0.08 tolerated(0.09) probably_damaging(0.996) TCGA-DU-6392-01 11 58391922 58391922 G A CNTF Missense_Mutation p.R177H 0.45 tolerated(0.21) possibly_damaging(0.48) TCGA-DU-6392-01 11 58477642 58477642 C T GLYAT Splice_Site p.X163_splice 0.11 TCGA-DU-6392-01 11 58723154 58723154 G A GLYATL1 Missense_Mutation p.R219Q 0.16 deleterious(0.01) benign(0.012) TCGA-DU-6392-01 11 587330 587330 G A PHRF1 Missense_Mutation p.A96T 0.31 tolerated(0.55) benign(0.04) TCGA-DU-6392-01 11 58920195 58920195 C T FAM111A Missense_Mutation p.R352C 0.37 tolerated(0.08) benign(0.004) TCGA-DU-6392-01 11 58962747 58962747 G T DTX4 Missense_Mutation p.G481W 0.15 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 58979412 58979412 C T MPEG1 Silent p.P309P 0.32 TCGA-DU-6392-01 11 5906257 5906257 T C OR52E4 Silent p.H245H 0.55 TCGA-DU-6392-01 11 59190336 59190336 A C OR5A2 Missense_Mutation p.L31V 0.40 tolerated(1) benign(0.018) TCGA-DU-6392-01 11 59211585 59211585 C A OR5A1 Missense_Mutation p.S315Y 0.25 deleterious(0) probably_damaging(0.94) TCGA-DU-6392-01 11 59245181 59245181 C A OR4D10 Silent p.S93S 0.36 TCGA-DU-6392-01 11 59271671 59271671 C T OR4D11 Missense_Mutation p.T208I 0.33 tolerated(0.17) possibly_damaging(0.878) TCGA-DU-6392-01 11 59344074 59344074 C T OSBP Nonsense_Mutation p.W800* 0.35 TCGA-DU-6392-01 11 59420449 59420449 G A PATL1 Silent p.H388H 0.49 TCGA-DU-6392-01 11 59480455 59480455 G T OR10V1 Silent p.P288P 0.37 TCGA-DU-6392-01 11 59578147 59578165 GCGGCGCGGAGCTCCCCCA - MRPL16 5'UTR 0.63 TCGA-DU-6392-01 11 59604792 59604792 C T GIF Silent p.K242K 0.42 TCGA-DU-6392-01 11 59620351 59620351 G A TCN1 3'UTR 0.31 TCGA-DU-6392-01 11 5969408 5969408 G A OR56A3 Missense_Mutation p.V278I 0.42 tolerated(0.57) benign(0.013) TCGA-DU-6392-01 11 59828745 59828745 G T MS4A3 Missense_Mutation p.D38Y 0.37 deleterious(0.01) probably_damaging(0.943) TCGA-DU-6392-01 11 59940569 59940569 G A MS4A6A Silent p.L223L 0.49 TCGA-DU-6392-01 11 60048141 60048141 A T MS4A4A 5'UTR 0.43 TCGA-DU-6392-01 11 60075626 60075626 C T MS4A4A Missense_Mutation p.S232F 0.33 tolerated(0.59) benign(0.008) TCGA-DU-6392-01 11 60198381 60198381 T C MS4A5 Missense_Mutation p.F89S 0.11 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 11 60230540 60230540 G T MS4A1 Silent p.G75G 0.08 TCGA-DU-6392-01 11 60234484 60234484 C A MS4A1 Missense_Mutation p.A209D 0.40 deleterious(0.01) probably_damaging(0.971) TCGA-DU-6392-01 11 60310130 60310130 C T MS4A13 3'UTR 0.65 TCGA-DU-6392-01 11 60567302 60567302 C T MS4A10 Missense_Mutation p.L242F 0.50 tolerated_low_confidence(0.17) benign(0.037) TCGA-DU-6392-01 11 60641122 60641122 C T ZP1 Silent p.G482G 0.35 TCGA-DU-6392-01 11 60689458 60689458 C T TMEM109 Missense_Mutation p.R185W 0.43 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 60701095 60701095 C T TMEM132A Missense_Mutation p.R481C 0.47 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 11 60708695 60708695 C T SLC15A3 Missense_Mutation p.R392H 0.46 tolerated(0.69) benign(0.004) TCGA-DU-6392-01 11 607285 607285 C T PHRF1 Missense_Mutation p.A609V 0.43 tolerated(0.06) benign(0.001) TCGA-DU-6392-01 11 608157 608157 G A PHRF1 Missense_Mutation p.A900T 0.41 tolerated(0.78) benign(0) TCGA-DU-6392-01 11 608259 608259 C T PHRF1 Missense_Mutation p.P934S 0.45 tolerated(0.06) benign(0.075) TCGA-DU-6392-01 11 60889372 60889372 C T CD5 Silent p.V365V 0.38 TCGA-DU-6392-01 11 609157 609157 C T PHRF1 Missense_Mutation p.T1233M 0.20 tolerated(0.12) benign(0.035) TCGA-DU-6392-01 11 61018760 61018760 G T PGA5 3'UTR 0.37 TCGA-DU-6392-01 11 61026580 61026580 G A VWCE Missense_Mutation p.T812I 0.40 deleterious_low_confidence(0) benign(0.215) TCGA-DU-6392-01 11 61070156 61070156 C T DDB1 Missense_Mutation p.V1004I 0.07 tolerated(0.2) benign(0.07) TCGA-DU-6392-01 11 61124253 61124253 C A CYB561A3 Intron 0.22 TCGA-DU-6392-01 11 61135448 61135448 G A TMEM138 Missense_Mutation p.M118I 0.18 tolerated(0.33) benign(0) TCGA-DU-6392-01 11 61196686 61196686 T C CPSF7 Missense_Mutation p.I51V 0.45 tolerated(0.14) benign(0.025) TCGA-DU-6392-01 11 61252177 61252177 C T PPP1R32 Silent p.F133F 0.45 TCGA-DU-6392-01 11 612999 612999 C A IRF7 Missense_Mutation p.K465N 0.11 deleterious(0) probably_damaging(0.979) TCGA-DU-6392-01 11 613580 613580 G A IRF7 Missense_Mutation p.A301V 0.59 tolerated(0.57) benign(0.009) TCGA-DU-6392-01 11 61507019 61507019 C T DAGLA Missense_Mutation p.T580M 0.32 tolerated(0.14) benign(0.266) TCGA-DU-6392-01 11 61549094 61549094 C A MYRF Silent p.S938S 0.08 TCGA-DU-6392-01 11 61608110 61608110 G T FADS2 Missense_Mutation p.W177C 0.35 tolerated(0.15) benign(0.25) TCGA-DU-6392-01 11 61646218 61646218 C A FADS3 Missense_Mutation p.K208N 0.45 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 61734852 61734852 C T FTH1 Missense_Mutation p.D16N 0.53 tolerated(0.09) benign(0.026) TCGA-DU-6392-01 11 6190901 6190901 G T OR52B2 Missense_Mutation p.S219Y 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 6190908 6190908 C T OR52B2 Missense_Mutation p.A217T 0.47 tolerated(0.18) benign(0.006) TCGA-DU-6392-01 11 621608 621608 C T CDHR5 Missense_Mutation p.R154H 0.40 tolerated(0.12) benign(0.135) TCGA-DU-6392-01 11 62186529 62186529 C T SCGB1A1 5'UTR 0.61 TCGA-DU-6392-01 11 62189789 62189789 C A SCGB1A1 Missense_Mutation p.P51H 0.14 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 11 62190626 62190626 G A SCGB1A1 3'UTR 0.32 TCGA-DU-6392-01 11 6221156 6221156 A G OR52W1 Missense_Mutation p.T235A 0.10 deleterious(0.01) possibly_damaging(0.622) TCGA-DU-6392-01 11 6221305 6221305 C T OR52W1 Silent p.N284N 0.42 TCGA-DU-6392-01 11 62284747 62284747 C T AHNAK Missense_Mutation p.M5714I 0.37 probably_damaging(0.986) TCGA-DU-6392-01 11 62285453 62285453 C T AHNAK Missense_Mutation p.G5479D 0.35 possibly_damaging(0.908) TCGA-DU-6392-01 11 62287036 62287036 A G AHNAK Silent p.A4951A 0.34 TCGA-DU-6392-01 11 62289319 62289319 T G AHNAK Missense_Mutation p.K4190N 0.43 probably_damaging(0.999) TCGA-DU-6392-01 11 62289689 62289689 T C AHNAK Missense_Mutation p.K4067R 0.05 probably_damaging(0.997) TCGA-DU-6392-01 11 62290342 62290342 G A AHNAK Silent p.I3849I 0.43 TCGA-DU-6392-01 11 62292663 62292663 C A AHNAK Missense_Mutation p.G3076C 0.05 probably_damaging(0.978) TCGA-DU-6392-01 11 62292718 62292718 C A AHNAK Missense_Mutation p.K3057N 0.06 benign(0.045) TCGA-DU-6392-01 11 62294946 62294946 G A AHNAK Missense_Mutation p.P2315S 0.31 benign(0.396) TCGA-DU-6392-01 11 62295065 62295065 G A AHNAK Missense_Mutation p.S2275L 0.31 benign(0.228) TCGA-DU-6392-01 11 62297964 62297964 G A AHNAK Missense_Mutation p.P1309S 0.44 probably_damaging(0.999) TCGA-DU-6392-01 11 62299568 62299568 G A AHNAK Missense_Mutation p.P774L 0.31 probably_damaging(0.913) TCGA-DU-6392-01 11 62300220 62300220 G T AHNAK Missense_Mutation p.L557I 0.37 benign(0.06) TCGA-DU-6392-01 11 62302477 62302477 G T AHNAK Missense_Mutation p.L114M 0.32 probably_damaging(0.982) TCGA-DU-6392-01 11 6231582 6231582 C T C11orf42 Missense_Mutation p.P192L 0.07 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 6232659 6232659 C T FAM160A2 3'UTR 0.32 TCGA-DU-6392-01 11 6232933 6232933 G C FAM160A2 Missense_Mutation p.R922G 0.08 tolerated(0.07) benign(0.004) TCGA-DU-6392-01 11 6235765 6235765 C T FAM160A2 Silent p.A825A 0.09 TCGA-DU-6392-01 11 62361761 62361761 G T MTA2 Missense_Mutation p.P604H 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.87) TCGA-DU-6392-01 11 62374475 62374475 G A EML3 Missense_Mutation p.R487W 0.38 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 11 62445254 62445254 T A UBXN1 Missense_Mutation p.K178M 0.38 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 11 62472962 62472962 G T BSCL2 Missense_Mutation p.P72H 0.38 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 11 62491095 62491095 G A HNRNPUL2 Silent p.Y285Y 0.47 TCGA-DU-6392-01 11 62519916 62519916 G A ZBTB3 Silent p.Y457Y 0.27 TCGA-DU-6392-01 11 62520277 62520277 G A ZBTB3 Missense_Mutation p.A337V 0.48 tolerated(0.29) benign(0.006) TCGA-DU-6392-01 11 62549438 62549438 G T TAF6L Missense_Mutation p.G202W 0.12 deleterious(0) possibly_damaging(0.86) TCGA-DU-6392-01 11 62556618 62556618 G A TMEM179B Missense_Mutation p.A74T 0.48 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 11 62557503 62557503 G A TMEM179B Missense_Mutation p.R215H 0.56 tolerated(0.16) benign(0.004) TCGA-DU-6392-01 11 62557546 62557546 C T TMEM179B 3'UTR 0.24 TCGA-DU-6392-01 11 62655861 62655861 G A SLC3A2 Missense_Mutation p.R531Q 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 62655901 62655901 G A SLC3A2 Silent p.A544A 0.12 TCGA-DU-6392-01 11 62768254 62768254 G A SLC22A8 Silent p.A125A 0.32 TCGA-DU-6392-01 11 6281259 6281259 T C CCKBR Missense_Mutation p.V34A 0.36 tolerated(1) benign(0) TCGA-DU-6392-01 11 6291971 6291971 G A CCKBR Missense_Mutation p.R250H 0.08 tolerated(0.16) benign(0.015) TCGA-DU-6392-01 11 6292066 6292066 G A CCKBR Intron 0.59 TCGA-DU-6392-01 11 62933548 62933548 G A SLC22A25 Missense_Mutation p.T418I 0.24 tolerated(0.85) benign(0.006) TCGA-DU-6392-01 11 63064818 63064818 G A SLC22A10 Missense_Mutation p.A184T 0.37 deleterious(0.04) benign(0.248) TCGA-DU-6392-01 11 63177288 63177288 G A SLC22A9 Missense_Mutation p.R539K 0.38 tolerated(0.19) benign(0.022) TCGA-DU-6392-01 11 63398565 63398565 A G ATL3 Missense_Mutation p.Y496H 0.09 tolerated(0.14) probably_damaging(0.999) TCGA-DU-6392-01 11 6340468 6340468 C T PRKCDBP Silent p.P237P 0.45 TCGA-DU-6392-01 11 63487004 63487004 C T RTN3 Silent p.L344L 0.44 TCGA-DU-6392-01 11 63488068 63488068 C A RTN3 Silent p.S698S 0.42 TCGA-DU-6392-01 11 63667395 63667395 T G MARK2 Missense_Mutation p.F194C 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 63884068 63884068 T C FLRT1 Missense_Mutation p.V110A 0.43 tolerated(0.14) benign(0.219) TCGA-DU-6392-01 11 63884783 63884783 C T FLRT1 Silent p.A348A 0.37 TCGA-DU-6392-01 11 63960582 63960582 C T STIP1 Silent p.A14A 0.36 TCGA-DU-6392-01 11 63971654 63971654 G A STIP1 3'UTR 0.36 TCGA-DU-6392-01 11 63978187 63978187 G A FERMT3 Missense_Mutation p.A89T 0.35 tolerated(0.1) benign(0.081) TCGA-DU-6392-01 11 63988555 63988555 G A FERMT3 Missense_Mutation p.R542H 0.28 deleterious(0.01) probably_damaging(0.967) TCGA-DU-6392-01 11 63990590 63990590 G A FERMT3 Missense_Mutation p.V585M 0.41 deleterious(0) possibly_damaging(0.818) TCGA-DU-6392-01 11 63990794 63990794 G A FERMT3 Missense_Mutation p.E612K 0.32 deleterious(0.01) probably_damaging(0.93) TCGA-DU-6392-01 11 63994254 63994254 A G NUDT22 Missense_Mutation p.I44V 0.20 tolerated(0.7) benign(0.012) TCGA-DU-6392-01 11 64003358 64003358 G A VEGFB Silent p.E59E 0.29 TCGA-DU-6392-01 11 64012292 64012292 G T PPP1R14B Silent p.A126A 0.38 TCGA-DU-6392-01 11 64026160 64026160 C A PLCB3 Missense_Mutation p.L410I 0.35 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 11 64027527 64027527 G T PLCB3 Missense_Mutation p.G518C 0.24 tolerated(0.07) benign(0.345) TCGA-DU-6392-01 11 64032853 64032853 C T PLCB3 Nonsense_Mutation p.R972* 0.30 TCGA-DU-6392-01 11 64081741 64081741 G A ESRRA Missense_Mutation p.R158Q 0.50 deleterious(0) probably_damaging(0.931) TCGA-DU-6392-01 11 64120274 64120274 G A CCDC88B Missense_Mutation p.A1139T 0.29 tolerated(0.17) benign(0.421) TCGA-DU-6392-01 11 6417022 6417022 C T APBB1 Silent p.A651A 0.42 TCGA-DU-6392-01 11 6422859 6422859 C T APBB1 Missense_Mutation p.R481H 0.40 deleterious(0.01) benign(0.003) TCGA-DU-6392-01 11 6423400 6423400 T C APBB1 Missense_Mutation p.K432E 0.40 deleterious(0.05) benign(0.008) TCGA-DU-6392-01 11 6432274 6432274 C T APBB1 Missense_Mutation p.E102K 0.07 tolerated(0.31) benign(0.011) TCGA-DU-6392-01 11 6432549 6432549 G A APBB1 Missense_Mutation p.S10L 0.35 tolerated_low_confidence(0.1) possibly_damaging(0.776) TCGA-DU-6392-01 11 64504321 64504321 C A RASGRP2 Missense_Mutation p.K333N 0.45 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 64506832 64506832 C A RASGRP2 Missense_Mutation p.K271N 0.10 deleterious(0.02) possibly_damaging(0.823) TCGA-DU-6392-01 11 64532813 64532813 T G SF1 3'UTR 0.37 TCGA-DU-6392-01 11 64533074 64533074 C T SF1 Intron 0.29 TCGA-DU-6392-01 11 64533621 64533621 G A SF1 Intron 0.40 TCGA-DU-6392-01 11 64540927 64540927 C A SF1 Missense_Mutation p.G196C 0.10 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 11 64575411 64575411 G A MEN1 Silent p.G207G 0.42 TCGA-DU-6392-01 11 6458289 6458289 G A HPX Silent p.T274T 0.30 TCGA-DU-6392-01 11 64594799 64594799 G A CDC42BPG Missense_Mutation p.R1408C 0.57 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 11 64622267 64622267 C T EHD1 Silent p.T381T 0.05 TCGA-DU-6392-01 11 64662655 64662655 G T ATG2A Silent p.I1869I 0.11 TCGA-DU-6392-01 11 64664287 64664287 G A ATG2A Silent p.D1735D 0.36 TCGA-DU-6392-01 11 64674212 64674212 C T ATG2A Missense_Mutation p.V970I 0.18 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 11 6478090 6478090 C T TRIM3 Missense_Mutation p.R289Q 0.30 tolerated(1) benign(0.005) TCGA-DU-6392-01 11 64799950 64799950 C T SNX15 Silent p.D61D 0.40 TCGA-DU-6392-01 11 64806070 64806070 G A SNX15 Missense_Mutation p.V231M 0.28 tolerated(0.26) benign(0.008) TCGA-DU-6392-01 11 64824954 64824954 G T NAALADL1 Silent p.V164V 0.23 TCGA-DU-6392-01 11 64852626 64852626 G A ZFPL1 Missense_Mutation p.D48N 0.31 deleterious(0.02) probably_damaging(0.965) TCGA-DU-6392-01 11 64855620 64855620 G A ZFPL1 3'UTR 0.44 TCGA-DU-6392-01 11 64875106 64875106 C T VPS51 Missense_Mutation p.R138W 0.18 tolerated(0.09) possibly_damaging(0.903) TCGA-DU-6392-01 11 64880801 64880801 C A TM7SF2 Silent p.T138T 0.10 TCGA-DU-6392-01 11 64884244 64884244 C T ZNHIT2 Silent p.L294L 0.10 TCGA-DU-6392-01 11 64940338 64940338 T C SPDYC Missense_Mutation p.S234P 0.17 tolerated(0.24) possibly_damaging(0.454) TCGA-DU-6392-01 11 64981416 64981416 C A CAPN1 3'Flank 0.19 TCGA-DU-6392-01 11 65088786 65088786 G T CDC42EP2 Missense_Mutation p.Q139H 0.38 tolerated(0.13) benign(0.001) TCGA-DU-6392-01 11 65109026 65109026 C T DPF2 Missense_Mutation p.A153V 0.28 tolerated(0.24) benign(0.001) TCGA-DU-6392-01 11 6524151 6524151 C T DNHD1 Silent p.Y305Y 0.51 TCGA-DU-6392-01 11 65267740 65267740 G A MALAT1 RNA 0.48 TCGA-DU-6392-01 11 65319442 65319442 C T LTBP3 Splice_Site p.X511_splice 0.47 TCGA-DU-6392-01 11 65325242 65325242 C A LTBP3 Missense_Mutation p.K63N 0.27 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 11 65347678 65347678 G A EHBP1L1 Missense_Mutation p.A147T 0.24 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 11 65349686 65349686 G A EHBP1L1 Missense_Mutation p.A515T 0.57 tolerated(0.06) benign(0.051) TCGA-DU-6392-01 11 65351009 65351009 G A EHBP1L1 Missense_Mutation p.E956K 0.30 tolerated(0.11) benign(0.129) TCGA-DU-6392-01 11 65360609 65360609 G A KCNK7 Missense_Mutation p.A264V 0.58 tolerated(0.27) possibly_damaging(0.905) TCGA-DU-6392-01 11 65361297 65361297 A G KCNK7 Missense_Mutation p.M123T 0.08 deleterious(0) benign(0.08) TCGA-DU-6392-01 11 65366003 65366003 C T MAP3K11 Missense_Mutation p.R768Q 0.43 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-DU-6392-01 11 65396306 65396306 C T PCNXL3 Silent p.F1276F 0.29 TCGA-DU-6392-01 11 65403922 65403922 G A PCNXL3 Missense_Mutation p.G1885D 0.44 tolerated(0.07) possibly_damaging(0.634) TCGA-DU-6392-01 11 65409022 65409022 G A SIPA1 Silent p.E210E 0.44 TCGA-DU-6392-01 11 6541014 6541014 A G DNHD1 Missense_Mutation p.Y526C 0.44 probably_damaging(0.927) TCGA-DU-6392-01 11 6541320 6541320 C A DNHD1 Silent p.T591T 0.14 TCGA-DU-6392-01 11 65413705 65413705 G A SIPA1 Missense_Mutation p.R426H 0.56 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 6541413 6541413 T G DNHD1 Intron 0.25 TCGA-DU-6392-01 11 65429251 65429251 G T RELA Missense_Mutation p.P81H 0.16 tolerated(0.07) possibly_damaging(0.888) TCGA-DU-6392-01 11 65429438 65429438 T C RELA Silent p.T52T 0.13 TCGA-DU-6392-01 11 65481966 65481966 G T KAT5 Missense_Mutation p.D231Y 0.44 deleterious(0) possibly_damaging(0.905) TCGA-DU-6392-01 11 65620382 65620382 C T SNX32 Nonsense_Mutation p.R371* 0.46 TCGA-DU-6392-01 11 65632736 65632736 C T MUS81 Missense_Mutation p.R483C 0.38 deleterious(0.04) benign(0.359) TCGA-DU-6392-01 11 65733943 65733943 C A SART1 Silent p.I368I 0.41 TCGA-DU-6392-01 11 65734851 65734851 C A SART1 Missense_Mutation p.S437Y 0.37 deleterious(0) possibly_damaging(0.892) TCGA-DU-6392-01 11 65745328 65745328 C T SART1 Silent p.I710I 0.24 TCGA-DU-6392-01 11 65765991 65765991 C T EIF1AD 3'UTR 0.20 TCGA-DU-6392-01 11 65784267 65784267 G A CATSPER1 3'UTR 0.35 TCGA-DU-6392-01 11 65787651 65787651 C A CATSPER1 Missense_Mutation p.E695D 0.25 deleterious(0.01) benign(0.173) TCGA-DU-6392-01 11 65788617 65788617 G A CATSPER1 Silent p.G577G 0.33 TCGA-DU-6392-01 11 65793574 65793574 G A CATSPER1 Missense_Mutation p.P93S 0.08 tolerated(0.43) benign(0.281) TCGA-DU-6392-01 11 65810878 65810878 G A GAL3ST3 Silent p.F132F 0.44 TCGA-DU-6392-01 11 6587819 6587819 C T DNHD1 Silent p.L3737L 0.45 TCGA-DU-6392-01 11 66039663 66039663 C T RAB1B Silent p.I41I 0.33 TCGA-DU-6392-01 11 66052906 66052906 C T YIF1A Missense_Mutation p.R196H 0.51 tolerated(0.32) benign(0.003) TCGA-DU-6392-01 11 66102523 66102523 C G RIN1 Silent p.V249V 0.33 TCGA-DU-6392-01 11 66102528 66102528 G A RIN1 Missense_Mutation p.R248C 0.55 deleterious(0.02) probably_damaging(0.998) TCGA-DU-6392-01 11 66136899 66136899 C T SLC29A2 Silent p.T72T 0.33 TCGA-DU-6392-01 11 66204828 66204828 C A MRPL11 Silent p.R102R 0.15 TCGA-DU-6392-01 11 66235654 66235654 C T PELI3 Missense_Mutation p.H19Y 0.16 tolerated_low_confidence(0.3) benign(0.02) TCGA-DU-6392-01 11 66241285 66241285 G A PELI3 Silent p.P243P 0.57 TCGA-DU-6392-01 11 66260231 66260231 C T DPP3 Missense_Mutation p.R345W 0.33 deleterious(0.02) benign(0.001) TCGA-DU-6392-01 11 66359608 66359608 G T CCDC87 Silent p.P293P 0.08 TCGA-DU-6392-01 11 6640080 6640080 G A TPP1 Silent p.A52A 0.36 TCGA-DU-6392-01 11 6640146 6640146 C T TPP1 Silent p.T30T 0.11 TCGA-DU-6392-01 11 6644437 6644437 C T DCHS1 Missense_Mutation p.E2824K 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 66466163 66466163 C T SPTBN2 Missense_Mutation p.A1321T 0.37 deleterious(0.03) probably_damaging(0.997) TCGA-DU-6392-01 11 66472098 66472098 G A SPTBN2 Silent p.R883R 0.20 TCGA-DU-6392-01 11 6648773 6648773 G A DCHS1 Missense_Mutation p.P1833S 0.35 deleterious(0.03) probably_damaging(0.971) TCGA-DU-6392-01 11 66612667 66612667 G A RCE1 Missense_Mutation p.R217H 0.44 deleterious(0.01) probably_damaging(0.976) TCGA-DU-6392-01 11 6662069 6662069 C T DCHS1 Missense_Mutation p.R259H 0.40 tolerated(0.07) probably_damaging(0.999) TCGA-DU-6392-01 11 66625589 66625589 T C LRFN4 Missense_Mutation p.L125P 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 66625615 66625615 C T LRFN4 Missense_Mutation p.R134C 0.36 tolerated(0.18) probably_damaging(0.924) TCGA-DU-6392-01 11 66625626 66625626 G T LRFN4 Silent p.P137P 0.41 TCGA-DU-6392-01 11 66626355 66626355 G T LRFN4 Missense_Mutation p.E380D 0.40 tolerated(0.57) benign(0.002) TCGA-DU-6392-01 11 67047315 67047315 C T ADRBK1 Silent p.Y149Y 0.39 TCGA-DU-6392-01 11 67049162 67049162 G A ADRBK1 Silent p.T263T 0.53 TCGA-DU-6392-01 11 67049350 67049350 G A ADRBK1 Missense_Mutation p.R295H 0.43 tolerated(0.06) probably_damaging(0.958) TCGA-DU-6392-01 11 67051175 67051175 C T ADRBK1 Intron 0.32 TCGA-DU-6392-01 11 67068588 67068588 C T ANKRD13D Missense_Mutation p.R401C 0.35 deleterious(0.02) benign(0.023) TCGA-DU-6392-01 11 67132614 67132614 C T CLCF1 Missense_Mutation p.G224D 0.29 tolerated_low_confidence(0.05) benign(0.002) TCGA-DU-6392-01 11 67174430 67174430 G A TBC1D10C Missense_Mutation p.A261T 0.44 tolerated(0.58) benign(0.021) TCGA-DU-6392-01 11 67200096 67200096 G T RPS6KB2 Missense_Mutation p.E161D 0.08 tolerated(0.09) benign(0.168) TCGA-DU-6392-01 11 67200867 67200867 G A RPS6KB2 Silent p.K285K 0.11 TCGA-DU-6392-01 11 67203585 67203585 G T PTPRCAP Silent p.R80R 0.35 TCGA-DU-6392-01 11 67254613 67254613 C T AIP Missense_Mutation p.T79I 0.35 deleterious(0) possibly_damaging(0.771) TCGA-DU-6392-01 11 67261829 67261829 G A PITPNM1 Silent p.N915N 0.61 TCGA-DU-6392-01 11 67267648 67267649 - G PITPNM1 Frame_Shift_Ins p.G296Rfs*37 0.22 TCGA-DU-6392-01 11 67267735 67267735 G A PITPNM1 Silent p.S266S 0.39 TCGA-DU-6392-01 11 67287408 67287408 C T CABP2 Missense_Mutation p.D165N 0.56 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 67376950 67376950 C T NDUFV1 Silent p.D118D 0.38 TCGA-DU-6392-01 11 67377969 67377969 A G NDUFV1 Missense_Mutation p.T210A 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 11 67379590 67379590 G T NDUFV1 Splice_Site p.X388_splice 0.20 TCGA-DU-6392-01 11 67402558 67402558 C T TBX10 Missense_Mutation p.V62M 0.43 tolerated(0.12) possibly_damaging(0.625) TCGA-DU-6392-01 11 67803831 67803831 G A NDUFS8 Missense_Mutation p.V162M 0.32 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-DU-6392-01 11 68029758 68029758 C T C11orf24 Silent p.K235K 0.27 TCGA-DU-6392-01 11 6807113 6807113 C T OR2AG1 Missense_Mutation p.T282I 0.44 deleterious(0.01) possibly_damaging(0.558) TCGA-DU-6392-01 11 68133048 68133048 G A LRP5 Missense_Mutation p.R298H 0.43 deleterious(0.02) benign(0.002) TCGA-DU-6392-01 11 68157500 68157500 G A LRP5 Missense_Mutation p.A522T 0.40 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 11 6816879 6816879 G A OR6A2 Missense_Mutation p.P21S 0.36 tolerated(0.72) benign(0.004) TCGA-DU-6392-01 11 68193472 68193472 G A LRP5 Missense_Mutation p.A1152T 0.45 tolerated(0.52) benign(0.009) TCGA-DU-6392-01 11 68216504 68216504 C T LRP5 Missense_Mutation p.P1605L 0.40 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-DU-6392-01 11 68380596 68380596 C T PPP6R3 3'UTR 0.38 TCGA-DU-6392-01 11 68453074 68453074 C T GAL Nonsense_Mutation p.R32* 0.33 TCGA-DU-6392-01 11 68514826 68514826 G T MTL5 Silent p.I160I 0.09 TCGA-DU-6392-01 11 68540734 68540734 T C CPT1A Missense_Mutation p.K580R 0.58 tolerated(1) benign(0.017) TCGA-DU-6392-01 11 6867382 6867382 G T OR10A5 Missense_Mutation p.A157S 0.43 tolerated(0.56) possibly_damaging(0.755) TCGA-DU-6392-01 11 686916 686916 C T DEAF1 Missense_Mutation p.S249N 0.11 deleterious(0) probably_damaging(0.974) TCGA-DU-6392-01 11 68705683 68705683 A G IGHMBP2 Missense_Mutation p.D882G 0.24 deleterious(0) possibly_damaging(0.899) TCGA-DU-6392-01 11 68747524 68747524 G A MRGPRD Missense_Mutation p.T311M 0.35 tolerated(0.13) possibly_damaging(0.505) TCGA-DU-6392-01 11 68837924 68837924 C T TPCN2 Missense_Mutation p.R286W 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 68855400 68855400 G A TPCN2 Silent p.P746P 0.43 TCGA-DU-6392-01 11 69063719 69063719 G A MYEOV Missense_Mutation p.A268T 0.45 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-DU-6392-01 11 6913227 6913227 G A OR2D2 Nonsense_Mutation p.R169* 0.45 TCGA-DU-6392-01 11 69457922 69457922 T C CCND1 Missense_Mutation p.F108L 0.24 tolerated(0.34) probably_damaging(0.91) TCGA-DU-6392-01 11 6964317 6964317 C T ZNF215 Missense_Mutation p.P163S 0.38 tolerated(0.5) benign(0.008) TCGA-DU-6392-01 11 69951859 69951859 G A ANO1 Missense_Mutation p.D238N 0.10 deleterious(0.03) possibly_damaging(0.881) TCGA-DU-6392-01 11 70017073 70017073 G A ANO1 Missense_Mutation p.E760K 0.33 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 11 70171029 70171029 C T PPFIA1 Missense_Mutation p.A148V 0.35 deleterious(0.01) probably_damaging(0.969) TCGA-DU-6392-01 11 70172385 70172385 A G PPFIA1 Silent p.E208E 0.32 TCGA-DU-6392-01 11 7021900 7021900 G A ZNF214 Silent p.D338D 0.50 TCGA-DU-6392-01 11 70275272 70275272 G A CTTN Silent p.R344R 0.15 TCGA-DU-6392-01 11 70319000 70319000 C T SHANK2 Missense_Mutation p.A1843T 0.27 deleterious(0) possibly_damaging(0.483) TCGA-DU-6392-01 11 70319333 70319333 C T SHANK2 Missense_Mutation p.A1732T 0.38 tolerated(0.95) possibly_damaging(0.499) TCGA-DU-6392-01 11 70331536 70331536 G A SHANK2 Missense_Mutation p.A1622V 0.35 deleterious(0.04) possibly_damaging(0.483) TCGA-DU-6392-01 11 70333218 70333218 C T SHANK2 Silent p.P1061P 0.35 TCGA-DU-6392-01 11 70507832 70507832 A G SHANK2 Intron 0.30 TCGA-DU-6392-01 11 7081244 7081244 A T NLRP14 Missense_Mutation p.K918M 0.17 deleterious(0) probably_damaging(0.974) TCGA-DU-6392-01 11 71152283 71152283 C T DHCR7 Missense_Mutation p.A206T 0.30 tolerated(0.12) possibly_damaging(0.686) TCGA-DU-6392-01 11 71155082 71155082 G A DHCR7 Missense_Mutation p.T93M 0.23 deleterious(0) probably_damaging(0.967) TCGA-DU-6392-01 11 71260186 71260186 C A KRTAP5-9 Silent p.V161V 0.08 TCGA-DU-6392-01 11 71507088 71507088 C T FAM86C1 Missense_Mutation p.S96L 0.39 deleterious(0) probably_damaging(0.979) TCGA-DU-6392-01 11 71671880 71671880 G A RNF121 Silent p.L62L 0.09 TCGA-DU-6392-01 11 71715338 71715338 C T NUMA1 Missense_Mutation p.R2019Q 0.35 probably_damaging(0.927) TCGA-DU-6392-01 11 71725431 71725431 C T NUMA1 Missense_Mutation p.E1040K 0.35 probably_damaging(0.998) TCGA-DU-6392-01 11 71726695 71726695 C A NUMA1 Missense_Mutation p.E618D 0.11 benign(0.071) TCGA-DU-6392-01 11 71939482 71939482 C A INPPL1 Missense_Mutation p.L113M 0.18 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 71942546 71942546 C T INPPL1 Missense_Mutation p.A501V 0.30 deleterious(0.04) possibly_damaging(0.886) TCGA-DU-6392-01 11 71943759 71943759 A G INPPL1 Missense_Mutation p.H601R 0.27 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 72408651 72408651 C T ARAP1 Silent p.E927E 0.38 TCGA-DU-6392-01 11 72537750 72537750 G T ATG16L2 Missense_Mutation p.E416D 0.35 tolerated(0.07) probably_damaging(0.938) TCGA-DU-6392-01 11 72726854 72726854 C A FCHSD2 Missense_Mutation p.R81M 0.15 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 11 72945750 72945750 C A P2RY2 Silent p.T182T 0.42 TCGA-DU-6392-01 11 72946019 72946019 G A P2RY2 Missense_Mutation p.R272H 0.38 deleterious(0) possibly_damaging(0.845) TCGA-DU-6392-01 11 72946205 72946205 G A P2RY2 Missense_Mutation p.R334H 0.51 tolerated(0.22) benign(0.003) TCGA-DU-6392-01 11 73007689 73007689 G A P2RY6 Silent p.P42P 0.46 TCGA-DU-6392-01 11 73007793 73007793 G A P2RY6 Missense_Mutation p.C77Y 0.11 deleterious(0.01) probably_damaging(0.975) TCGA-DU-6392-01 11 73020858 73020858 G A ARHGEF17 Missense_Mutation p.R392H 0.12 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-DU-6392-01 11 73021058 73021058 C T ARHGEF17 Missense_Mutation p.R459W 0.10 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-DU-6392-01 11 73022552 73022552 G A ARHGEF17 Missense_Mutation p.V957I 0.22 tolerated_low_confidence(0.14) benign(0.003) TCGA-DU-6392-01 11 73071440 73071440 G A ARHGEF17 Missense_Mutation p.A1428T 0.36 tolerated(0.45) benign(0.003) TCGA-DU-6392-01 11 73101671 73101671 G A RELT Splice_Site p.X40_splice 0.30 TCGA-DU-6392-01 11 73584383 73584383 C T COA4 Missense_Mutation p.R14Q 0.33 tolerated(1) benign(0) TCGA-DU-6392-01 11 73611337 73611337 T C PAAF1 Missense_Mutation p.F135S 0.42 tolerated(0.4) benign(0.055) TCGA-DU-6392-01 11 73712392 73712392 C T UCP3 3'UTR 0.28 TCGA-DU-6392-01 11 73796918 73796918 G A C2CD3 Missense_Mutation p.R1219W 0.37 deleterious(0) benign(0.085) TCGA-DU-6392-01 11 73809210 73809210 G A C2CD3 Silent p.G941G 0.49 TCGA-DU-6392-01 11 74329667 74329667 C A POLD3 Missense_Mutation p.L160I 0.10 tolerated(0.41) benign(0.291) TCGA-DU-6392-01 11 74340269 74340269 C T POLD3 Nonsense_Mutation p.R303* 0.29 TCGA-DU-6392-01 11 74413958 74413958 G A CHRDL2 Missense_Mutation p.A334V 0.41 tolerated(0.37) benign(0.005) TCGA-DU-6392-01 11 74717250 74717250 C T NEU3 Missense_Mutation p.P367S 0.14 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 74717605 74717605 G A NEU3 3'UTR 0.32 TCGA-DU-6392-01 11 7488091 7488091 C A SYT9 3'UTR 0.42 TCGA-DU-6392-01 11 74904424 74904424 A G SLCO2B1 Missense_Mutation p.I413V 0.20 tolerated(0.06) possibly_damaging(0.669) TCGA-DU-6392-01 11 74989755 74989755 C A ARRB1 Missense_Mutation p.Q172H 0.10 deleterious(0) benign(0.279) TCGA-DU-6392-01 11 75115230 75115230 C T RPS3 Missense_Mutation p.R189C 0.52 tolerated(0.12) benign(0.362) TCGA-DU-6392-01 11 75133660 75133660 G A KLHL35 Silent p.H572H 0.12 TCGA-DU-6392-01 11 75139543 75139543 C T KLHL35 Missense_Mutation p.G337D 0.26 tolerated(0.2) unknown(0) TCGA-DU-6392-01 11 75153512 75153512 G T GDPD5 Missense_Mutation p.L355M 0.25 deleterious(0.01) probably_damaging(0.936) TCGA-DU-6392-01 11 75168791 75168791 C T GDPD5 Missense_Mutation p.V88I 0.29 tolerated(0.51) benign(0.002) TCGA-DU-6392-01 11 75188816 75188816 C T GDPD5 5'UTR 0.68 TCGA-DU-6392-01 11 75298562 75298562 C A MAP6 Missense_Mutation p.G662C 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-DU-6392-01 11 755902 755902 G A TALDO1 Missense_Mutation p.D41N 0.14 deleterious(0.05) possibly_damaging(0.536) TCGA-DU-6392-01 11 75852240 75852240 C T UVRAG Missense_Mutation p.T628I 0.51 deleterious_low_confidence(0.01) benign(0.273) TCGA-DU-6392-01 11 75898153 75898153 A G WNT11 Missense_Mutation p.C341R 0.37 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 11 75907592 75907592 G A WNT11 Missense_Mutation p.A85V 0.25 tolerated(0.12) benign(0.197) TCGA-DU-6392-01 11 76372121 76372121 C T LRRC32 Missense_Mutation p.M172I 0.42 tolerated(0.45) benign(0.063) TCGA-DU-6392-01 11 7670067 7670067 C T PPFIBP2 Missense_Mutation p.L612F 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 7673050 7673050 C A PPFIBP2 Missense_Mutation p.P804Q 0.28 tolerated(0.07) possibly_damaging(0.628) TCGA-DU-6392-01 11 76823762 76823762 C T CAPN5 Missense_Mutation p.T142I 0.14 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 11 76826516 76826516 G A CAPN5 Missense_Mutation p.V259M 0.36 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 11 76868017 76868017 G T MYO7A Missense_Mutation p.Q234H 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 11 76869430 76869430 G A MYO7A Silent p.S319S 0.20 TCGA-DU-6392-01 11 7687771 7687771 T G CYB5R2 Missense_Mutation p.D190A 0.39 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 11 76893070 76893070 A T MYO7A Missense_Mutation p.E993V 0.11 tolerated(0.16) benign(0.1) TCGA-DU-6392-01 11 76912592 76912592 G T MYO7A Missense_Mutation p.G1651V 0.42 deleterious(0.04) probably_damaging(1) TCGA-DU-6392-01 11 76980946 76980946 C T GDPD4 Missense_Mutation p.V154I 0.39 tolerated(1) benign(0.013) TCGA-DU-6392-01 11 77090938 77090938 C T PAK1 Splice_Site p.X97_splice 0.28 TCGA-DU-6392-01 11 771345 771345 C T PDDC1 Missense_Mutation p.A178T 0.30 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 11 77383090 77383090 C A RSF1 Nonsense_Mutation p.E1250* 0.40 TCGA-DU-6392-01 11 77412163 77412164 - T RSF1 Frame_Shift_Ins p.S704Kfs*6 0.32 TCGA-DU-6392-01 11 77412657 77412657 A G RSF1 Silent p.T539T 0.33 TCGA-DU-6392-01 11 77635939 77635939 C A INTS4 Splice_Site p.X458_splice 0.27 TCGA-DU-6392-01 11 77734238 77734238 G A KCTD14 Silent p.L20L 0.12 TCGA-DU-6392-01 11 77775031 77775031 G A THRSP Missense_Mutation p.S35N 0.47 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 77825382 77825382 G T ALG8 Silent p.I201I 0.25 TCGA-DU-6392-01 11 77885145 77885145 G T KCTD21 Silent p.S152S 0.09 TCGA-DU-6392-01 11 77885172 77885172 G A KCTD21 Silent p.V143V 0.36 TCGA-DU-6392-01 11 77885272 77885272 G A KCTD21 Missense_Mutation p.A110V 0.38 tolerated(0.08) benign(0.02) TCGA-DU-6392-01 11 77918633 77918633 G T USP35 Missense_Mutation p.K483N 0.10 tolerated(0.09) unknown(0) TCGA-DU-6392-01 11 77919936 77919936 G A USP35 Missense_Mutation p.A507T 0.40 deleterious(0.04) unknown(0) TCGA-DU-6392-01 11 77921330 77921330 G A USP35 Missense_Mutation p.R810H 0.48 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 77921496 77921496 C A USP35 Nonsense_Mutation p.C865* 0.07 TCGA-DU-6392-01 11 78277319 78277319 C A NARS2 Splice_Site p.X125_splice 0.44 TCGA-DU-6392-01 11 78369121 78369121 G A TENM4 Silent p.S2764S 0.32 TCGA-DU-6392-01 11 78383351 78383351 A G TENM4 Silent p.S1840S 0.21 TCGA-DU-6392-01 11 78387401 78387401 G A TENM4 Silent p.A1764A 0.33 TCGA-DU-6392-01 11 78437139 78437139 G T TENM4 Missense_Mutation p.L1179I 0.07 deleterious(0) possibly_damaging(0.869) TCGA-DU-6392-01 11 78443582 78443582 G A TENM4 Missense_Mutation p.R973W 0.41 tolerated(0.07) benign(0.339) TCGA-DU-6392-01 11 792355 792355 C A SLC25A22 Missense_Mutation p.A231S 0.08 tolerated(0.96) benign(0.032) TCGA-DU-6392-01 11 7949989 7949989 C A OR10A6 Missense_Mutation p.S74I 0.47 tolerated(0.22) possibly_damaging(0.707) TCGA-DU-6392-01 11 7982200 7982200 C A NLRP10 Missense_Mutation p.R320M 0.12 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 11 8117140 8117140 G A TUB Missense_Mutation p.A220T 0.25 tolerated(0.47) benign(0.002) TCGA-DU-6392-01 11 8117155 8117155 G A TUB Missense_Mutation p.A225T 0.64 tolerated(0.41) possibly_damaging(0.628) TCGA-DU-6392-01 11 82644518 82644518 C A C11orf82 Missense_Mutation p.P713H 0.07 tolerated(0.32) benign(0.002) TCGA-DU-6392-01 11 82644869 82644869 C A C11orf82 Missense_Mutation p.P830H 0.20 tolerated(0.5) benign(0.007) TCGA-DU-6392-01 11 82708378 82708378 A G RAB30 Intron 0.36 TCGA-DU-6392-01 11 82936072 82936072 A C ANKRD42 Missense_Mutation p.E226D 0.23 tolerated(0.18) benign(0.033) TCGA-DU-6392-01 11 82991211 82991211 C T CCDC90B Missense_Mutation p.A65T 0.09 tolerated(0.07) possibly_damaging(0.838) TCGA-DU-6392-01 11 836123 836123 C T CD151 Silent p.Y18Y 0.39 TCGA-DU-6392-01 11 8457657 8457657 C A STK33 Missense_Mutation p.S326I 0.22 deleterious(0.03) benign(0.396) TCGA-DU-6392-01 11 85406115 85406115 C A SYTL2 3'UTR 0.14 TCGA-DU-6392-01 11 85415995 85415995 T G SYTL2 Missense_Mutation p.N1065T 0.07 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 11 85422207 85422207 C T SYTL2 Silent p.P931P 0.41 TCGA-DU-6392-01 11 85425631 85425631 A G SYTL2 Intron 0.64 TCGA-DU-6392-01 11 85435377 85435377 G T SYTL2 Missense_Mutation p.T708N 0.36 tolerated(0.23) benign(0.014) TCGA-DU-6392-01 11 85437295 85437295 C A SYTL2 Missense_Mutation p.A69S 0.30 tolerated_low_confidence(0.64) benign(0.023) TCGA-DU-6392-01 11 85445108 85445108 G A SYTL2 Missense_Mutation p.H421Y 0.43 tolerated(0.09) benign(0.001) TCGA-DU-6392-01 11 85622381 85622381 G T CCDC83 Missense_Mutation p.A244S 0.26 deleterious(0.04) benign(0.02) TCGA-DU-6392-01 11 85630563 85630563 C T CCDC83 3'UTR 0.12 TCGA-DU-6392-01 11 85693047 85693047 C A PICALM Splice_Site p.X506_splice 0.10 TCGA-DU-6392-01 11 86158194 86158194 G T ME3 Silent p.S431S 0.51 TCGA-DU-6392-01 11 86267742 86267742 T C ME3 Missense_Mutation p.Y107C 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 11 865520 865520 G T TSPAN4 Missense_Mutation p.R113M 0.20 deleterious(0.03) benign(0.027) TCGA-DU-6392-01 11 866626 866626 C T TSPAN4 Missense_Mutation p.A238V 0.32 deleterious_low_confidence(0) benign(0.142) TCGA-DU-6392-01 11 86663407 86663407 C T FZD4 Missense_Mutation p.V131I 0.09 tolerated(0.99) benign(0.252) TCGA-DU-6392-01 11 8705802 8705802 G A RPL27A Intron 0.39 TCGA-DU-6392-01 11 8718054 8718054 C T ST5 Missense_Mutation p.R1071H 0.33 tolerated(0.25) probably_damaging(0.999) TCGA-DU-6392-01 11 8720914 8720914 G A ST5 Missense_Mutation p.A915V 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-DU-6392-01 11 88242605 88242605 G A GRM5 Missense_Mutation p.R932C 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-6392-01 11 88242657 88242657 G A GRM5 Silent p.S914S 0.32 TCGA-DU-6392-01 11 88323889 88323889 G A GRM5 Nonsense_Mutation p.R524* 0.39 TCGA-DU-6392-01 11 88338068 88338068 G T GRM5 Silent p.I404I 0.12 TCGA-DU-6392-01 11 88911510 88911510 A C TYR Missense_Mutation p.E130A 0.29 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 11 88911756 88911756 G T TYR Missense_Mutation p.R212I 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 89106614 89106614 A G NOX4 Missense_Mutation p.V374A 0.26 tolerated(0.07) possibly_damaging(0.528) TCGA-DU-6392-01 11 89182670 89182670 C T NOX4 Missense_Mutation p.R96K 0.37 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 11 89392808 89392808 C T FOLH1B RNA 0.14 TCGA-DU-6392-01 11 8942885 8942885 T C C11orf16 Missense_Mutation p.Q461R 0.43 tolerated_low_confidence(0.16) benign(0.068) TCGA-DU-6392-01 11 8948649 8948649 G A C11orf16 Nonsense_Mutation p.Q133* 0.35 TCGA-DU-6392-01 11 8951035 8951035 C T C11orf16 Nonsense_Mutation p.W71* 0.13 TCGA-DU-6392-01 11 89911126 89911126 G A NAALAD2 Missense_Mutation p.A567T 0.10 tolerated(0.06) possibly_damaging(0.805) TCGA-DU-6392-01 11 89956140 89956140 A G CHORDC1 5'UTR 0.17 TCGA-DU-6392-01 11 9009126 9009126 G A NRIP3 Missense_Mutation p.L131F 0.46 tolerated(0.2) benign(0.084) TCGA-DU-6392-01 11 9042566 9042566 T C SCUBE2 3'UTR 0.10 TCGA-DU-6392-01 11 9068913 9068913 T C SCUBE2 Silent p.E664E 0.08 TCGA-DU-6392-01 11 9077443 9077443 G T SCUBE2 Nonsense_Mutation p.C368* 0.14 TCGA-DU-6392-01 11 9111361 9111361 G A SCUBE2 Missense_Mutation p.A50V 0.40 tolerated(0.48) probably_damaging(0.998) TCGA-DU-6392-01 11 9164959 9164959 A G DENND5A Silent p.P1126P 0.10 TCGA-DU-6392-01 11 9172281 9172281 G T DENND5A Missense_Mutation p.S851Y 0.34 deleterious(0.04) possibly_damaging(0.845) TCGA-DU-6392-01 11 92086202 92086202 T G FAT3 Silent p.P308P 0.08 TCGA-DU-6392-01 11 9225588 9225588 G A DENND5A Missense_Mutation p.R190C 0.33 tolerated(0.16) benign(0.003) TCGA-DU-6392-01 11 92534102 92534102 C T FAT3 Silent p.S2641S 0.20 TCGA-DU-6392-01 11 92577645 92577645 G A FAT3 Silent p.A3704A 0.36 TCGA-DU-6392-01 11 92600234 92600234 C T FAT3 Silent p.L3996L 0.40 TCGA-DU-6392-01 11 92881927 92881927 G T SLC36A4 Missense_Mutation p.L431M 0.11 deleterious(0.02) probably_damaging(0.987) TCGA-DU-6392-01 11 92917608 92917609 - T SLC36A4 Frame_Shift_Ins p.N86Kfs*37 0.34 TCGA-DU-6392-01 11 93170962 93170962 T C CCDC67 3'UTR 0.38 TCGA-DU-6392-01 11 93470275 93470275 T G TAF1D Missense_Mutation p.K197T 0.42 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 11 93800872 93800872 C A HEPHL1 Missense_Mutation p.P340H 0.08 deleterious(0) possibly_damaging(0.722) TCGA-DU-6392-01 11 93821949 93821949 G A HEPHL1 Missense_Mutation p.M703I 0.29 tolerated(0.29) benign(0.002) TCGA-DU-6392-01 11 93826743 93826743 A G HEPHL1 Missense_Mutation p.T791A 0.50 deleterious(0) possibly_damaging(0.744) TCGA-DU-6392-01 11 93837825 93837825 G A HEPHL1 Nonsense_Mutation p.W938* 0.34 TCGA-DU-6392-01 11 94113341 94113341 C T GPR83 Missense_Mutation p.V416M 0.15 deleterious(0.01) benign(0.08) TCGA-DU-6392-01 11 94126758 94126758 C T GPR83 Silent p.R180R 0.37 TCGA-DU-6392-01 11 94200986 94200986 C T MRE11A Missense_Mutation p.R364Q 0.45 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 11 94224008 94224008 C A MRE11A Missense_Mutation p.Q48H 0.31 tolerated(0.09) benign(0.034) TCGA-DU-6392-01 11 94231653 94231653 C A ANKRD49 Silent p.L225L 0.08 TCGA-DU-6392-01 11 9451283 9451283 G T IPO7 Nonsense_Mutation p.E552* 0.42 TCGA-DU-6392-01 11 9452542 9452542 C T IPO7 Missense_Mutation p.H625Y 0.42 deleterious(0.05) possibly_damaging(0.863) TCGA-DU-6392-01 11 94730996 94730996 C T KDM4D Missense_Mutation p.L154F 0.52 deleterious(0) probably_damaging(0.941) TCGA-DU-6392-01 11 94731271 94731271 G T KDM4D Missense_Mutation p.K245N 0.18 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 11 94918426 94918426 G A SESN3 Silent p.N252N 0.40 TCGA-DU-6392-01 11 9549261 9549261 C T ZNF143 3'UTR 0.45 TCGA-DU-6392-01 11 95546134 95546134 C T CEP57 Nonsense_Mutation p.R81* 0.35 TCGA-DU-6392-01 11 95564323 95564323 G T CEP57 Missense_Mutation p.R469I 0.11 deleterious(0.01) possibly_damaging(0.653) TCGA-DU-6392-01 11 95582927 95582928 - T MTMR2 Frame_Shift_Ins p.Y302Ifs*19 0.31 TCGA-DU-6392-01 11 95591744 95591744 G T MTMR2 Missense_Mutation p.S174Y 0.45 deleterious(0.01) benign(0.022) TCGA-DU-6392-01 11 96086732 96086732 G A CCDC82 3'UTR 0.37 TCGA-DU-6392-01 11 96092318 96092318 C T CCDC82 Missense_Mutation p.A469T 0.26 deleterious(0) benign(0.09) TCGA-DU-6392-01 11 96098203 96098203 C T CCDC82 Missense_Mutation p.G441R 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 11 9610215 9610215 G T WEE1 3'UTR 0.41 TCGA-DU-6392-01 11 96106557 96106557 A C CCDC82 Missense_Mutation p.F356V 0.54 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 11 96117716 96117716 C T CCDC82 Missense_Mutation p.E66K 0.49 tolerated(0.08) benign(0.002) TCGA-DU-6392-01 11 96117847 96117847 G A CCDC82 Missense_Mutation p.S22F 0.41 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 11 96125218 96125218 G T JRKL Nonsense_Mutation p.E469* 0.44 TCGA-DU-6392-01 11 977142 977142 G A AP2A2 Missense_Mutation p.R174H 0.26 deleterious(0.02) benign(0.338) TCGA-DU-6392-01 11 9875174 9875174 G A SBF2 Missense_Mutation p.R817W 0.35 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 11 99827614 99827614 G T CNTN5 Missense_Mutation p.E250D 0.34 tolerated(0.1) benign(0.002) TCGA-DU-6392-01 12 100433472 100433472 G A UHRF1BP1L Missense_Mutation p.R1393C 0.36 tolerated(0.07) benign(0.001) TCGA-DU-6392-01 12 100452367 100452367 A G UHRF1BP1L Silent p.D896D 0.38 TCGA-DU-6392-01 12 100452847 100452847 C T UHRF1BP1L Silent p.E736E 0.35 TCGA-DU-6392-01 12 100502171 100502171 G A UHRF1BP1L Missense_Mutation p.S67F 0.38 deleterious(0) probably_damaging(0.936) TCGA-DU-6392-01 12 100567088 100567088 C A RP11-175P13.3 RNA 0.17 TCGA-DU-6392-01 12 100732859 100732859 C A SCYL2 Missense_Mutation p.P900H 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 12 100790181 100790181 C T SLC17A8 Missense_Mutation p.T221I 0.32 deleterious(0) possibly_damaging(0.673) TCGA-DU-6392-01 12 10131982 10131982 A C CLEC12A Missense_Mutation p.N90H 0.42 deleterious(0.03) probably_damaging(0.986) TCGA-DU-6392-01 12 10133229 10133229 G T CLEC12A Missense_Mutation p.S153I 0.39 deleterious(0.01) possibly_damaging(0.852) TCGA-DU-6392-01 12 101333158 101333158 G A ANO4 Missense_Mutation p.D41N 0.32 tolerated(0.13) benign(0.287) TCGA-DU-6392-01 12 10151675 10151675 T G CLEC1B Missense_Mutation p.T9P 0.06 deleterious(0) possibly_damaging(0.61) TCGA-DU-6392-01 12 101587498 101587498 T C SLC5A8 Silent p.G199G 0.36 TCGA-DU-6392-01 12 101588872 101588872 C A SLC5A8 Splice_Site p.X179_splice 0.50 TCGA-DU-6392-01 12 101598314 101598314 A G SLC5A8 Silent p.V127V 0.10 TCGA-DU-6392-01 12 101603623 101603623 C A SLC5A8 Missense_Mutation p.D2Y 0.40 deleterious(0.03) benign(0.071) TCGA-DU-6392-01 12 10168241 10168241 T C CLEC12B Missense_Mutation p.F199L 0.38 tolerated(0.73) benign(0.007) TCGA-DU-6392-01 12 101702006 101702006 G A UTP20 Missense_Mutation p.R680H 0.44 deleterious(0.02) benign(0.004) TCGA-DU-6392-01 12 101720944 101720944 C T UTP20 Missense_Mutation p.R1043W 0.43 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 101757465 101757465 C A UTP20 Missense_Mutation p.L1968I 0.14 tolerated(0.09) possibly_damaging(0.878) TCGA-DU-6392-01 12 101769479 101769479 G T UTP20 Missense_Mutation p.K2447N 0.35 tolerated(0.13) benign(0.067) TCGA-DU-6392-01 12 102020663 102020663 C A MYBPC1 Intron 0.30 TCGA-DU-6392-01 12 102036200 102036200 G T MYBPC1 Missense_Mutation p.E198D 0.26 tolerated(0.17) probably_damaging(0.992) TCGA-DU-6392-01 12 102041871 102041871 G A MYBPC1 Missense_Mutation p.C355Y 0.12 deleterious(0) possibly_damaging(0.864) TCGA-DU-6392-01 12 102158793 102158793 G A GNPTAB Silent p.D634D 0.39 TCGA-DU-6392-01 12 102158832 102158832 G A GNPTAB Silent p.N621N 0.43 TCGA-DU-6392-01 12 10225962 10225962 T C CLEC1A Missense_Mutation p.T198A 0.53 tolerated(0.07) benign(0.268) TCGA-DU-6392-01 12 10228126 10228126 T A CLEC1A Nonsense_Mutation p.K174* 0.32 TCGA-DU-6392-01 12 1023699 1023699 C T RAD52 Splice_Site p.X289_splice 0.26 TCGA-DU-6392-01 12 103310897 103310897 C T PAH Silent p.A4A 0.34 TCGA-DU-6392-01 12 104335272 104335272 G A HSP90B1 Missense_Mutation p.A393T 0.08 deleterious(0.02) benign(0.284) TCGA-DU-6392-01 12 104337581 104337581 C T HSP90B1 Silent p.Y652Y 0.41 TCGA-DU-6392-01 12 104490205 104490205 G A HCFC2 Silent p.P578P 0.42 TCGA-DU-6392-01 12 10467450 10467450 C G KLRD1 3'UTR 0.38 TCGA-DU-6392-01 12 104681167 104681167 T C TXNRD1 Intron 0.08 TCGA-DU-6392-01 12 105420437 105420437 T C ALDH1L2 Missense_Mutation p.M868V 0.15 deleterious(0.03) benign(0.145) TCGA-DU-6392-01 12 105431891 105431891 G T ALDH1L2 Missense_Mutation p.A712D 0.28 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 12 105570695 105570695 G T APPL2 Missense_Mutation p.L597M 0.40 tolerated(0.19) benign(0.119) TCGA-DU-6392-01 12 105611477 105611477 C T APPL2 Silent p.Q60Q 0.09 TCGA-DU-6392-01 12 10603615 10603615 T - KLRC1 Frame_Shift_Del p.A48Lfs*36 0.21 TCGA-DU-6392-01 12 106460608 106460608 G A NUAK1 Missense_Mutation p.A653V 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-DU-6392-01 12 106460869 106460869 C T NUAK1 Missense_Mutation p.S566N 0.41 deleterious(0.03) probably_damaging(0.993) TCGA-DU-6392-01 12 106461707 106461707 G T NUAK1 Missense_Mutation p.L287M 0.37 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 12 106903274 106903274 C T POLR3B Silent p.L1117L 0.25 TCGA-DU-6392-01 12 106903277 106903277 C T POLR3B Nonsense_Mutation p.Q1118* 0.27 TCGA-DU-6392-01 12 107033141 107033141 G A RFX4 Silent p.K63K 0.48 TCGA-DU-6392-01 12 107155035 107155035 C A RFX4 Missense_Mutation p.L675M 0.34 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DU-6392-01 12 107372068 107372068 G T MTERFD3 Missense_Mutation p.T142N 0.33 tolerated(0.06) benign(0.421) TCGA-DU-6392-01 12 107395143 107395143 A C CRY1 Missense_Mutation p.F200C 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 12 107395629 107395629 T C CRY1 Missense_Mutation p.I170V 0.10 tolerated(0.57) benign(0.03) TCGA-DU-6392-01 12 10772820 10772820 A C STYK1 Missense_Mutation p.L398V 0.33 tolerated(0.3) probably_damaging(0.996) TCGA-DU-6392-01 12 108051522 108051522 G A BTBD11 3'UTR 0.29 TCGA-DU-6392-01 12 108102935 108102935 G A PWP1 Missense_Mutation p.A406T 0.10 tolerated(0.22) benign(0.306) TCGA-DU-6392-01 12 108104204 108104204 G A PWP1 Missense_Mutation p.C438Y 0.41 deleterious(0.02) possibly_damaging(0.828) TCGA-DU-6392-01 12 108618605 108618605 G A WSCD2 Missense_Mutation p.V258M 0.08 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 12 108910886 108910886 C T FICD Missense_Mutation p.A46V 0.42 tolerated_low_confidence(0.18) benign(0.002) TCGA-DU-6392-01 12 108912950 108912950 C T FICD Missense_Mutation p.L359F 0.45 tolerated(0.12) possibly_damaging(0.788) TCGA-DU-6392-01 12 108913162 108913162 G C FICD Silent p.L429L 0.24 TCGA-DU-6392-01 12 108920130 108920130 C T SART3 Missense_Mutation p.V706I 0.43 tolerated(0.06) probably_damaging(0.989) TCGA-DU-6392-01 12 108985995 108985995 C T TMEM119 Silent p.P55P 0.31 TCGA-DU-6392-01 12 109095064 109095064 G A CORO1C Missense_Mutation p.R11W 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 109577714 109577714 C A ACACB Silent p.G168G 0.32 TCGA-DU-6392-01 12 109614053 109614053 G A ACACB Silent p.P474P 0.40 TCGA-DU-6392-01 12 10961845 10961845 C T TAS2R9 Missense_Mutation p.S277N 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6392-01 12 10962216 10962216 C T TAS2R9 Nonsense_Mutation p.W153* 0.12 TCGA-DU-6392-01 12 10962280 10962280 G A TAS2R9 Missense_Mutation p.A132V 0.33 tolerated(0.52) benign(0.239) TCGA-DU-6392-01 12 109644624 109644624 G A ACACB Missense_Mutation p.S1008N 0.37 tolerated(1) benign(0.004) TCGA-DU-6392-01 12 109719221 109719221 C T FOXN4 Missense_Mutation p.A429T 0.34 tolerated(0.18) probably_damaging(0.963) TCGA-DU-6392-01 12 109719350 109719350 C T FOXN4 Missense_Mutation p.A386T 0.19 tolerated(0.84) benign(0.002) TCGA-DU-6392-01 12 10978281 10978282 - A TAS2R10 Frame_Shift_Ins p.L196Ffs*104 0.31 TCGA-DU-6392-01 12 10978290 10978290 A G TAS2R10 Silent p.C193C 0.08 TCGA-DU-6392-01 12 10978450 10978450 G A TAS2R10 Missense_Mutation p.S140L 0.35 tolerated(0.68) benign(0) TCGA-DU-6392-01 12 109879449 109879449 C A MYO1H Silent p.I840I 0.14 TCGA-DU-6392-01 12 109889431 109889431 C T KCTD10 Missense_Mutation p.R304H 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.84) TCGA-DU-6392-01 12 109945392 109945392 C T UBE3B Missense_Mutation p.L492F 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-DU-6392-01 12 110002938 110002938 C T MMAB Missense_Mutation p.E112K 0.33 tolerated(0.11) benign(0.021) TCGA-DU-6392-01 12 110221406 110221406 C A TRPV4 3'UTR 0.35 TCGA-DU-6392-01 12 110232147 110232147 G A TRPV4 Missense_Mutation p.P493L 0.12 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 12 110429453 110429453 C T GIT2 Silent p.P55P 0.12 TCGA-DU-6392-01 12 110456215 110456215 C T ANKRD13A Missense_Mutation p.R156C 0.39 deleterious(0) benign(0.212) TCGA-DU-6392-01 12 110461861 110461861 G A ANKRD13A Missense_Mutation p.G249R 0.08 deleterious(0) probably_damaging(0.967) TCGA-DU-6392-01 12 110463620 110463620 G T ANKRD13A Missense_Mutation p.R292I 0.21 deleterious(0) possibly_damaging(0.876) TCGA-DU-6392-01 12 110475456 110475456 C T ANKRD13A 3'UTR 0.33 TCGA-DU-6392-01 12 110488836 110488836 A G C12orf76 Intron 0.38 TCGA-DU-6392-01 12 110566865 110566865 G A IFT81 Missense_Mutation p.R120H 0.43 tolerated(0.05) benign(0.105) TCGA-DU-6392-01 12 11061323 11061323 G T TAS2R13 Missense_Mutation p.T192N 0.14 deleterious(0.03) possibly_damaging(0.873) TCGA-DU-6392-01 12 110764194 110764194 G T ATP2A2 Splice_Site p.X182_splice 0.22 TCGA-DU-6392-01 12 110780139 110780139 C T ATP2A2 Missense_Mutation p.A735V 0.38 deleterious(0.01) benign(0.129) TCGA-DU-6392-01 12 110783173 110783173 T C ATP2A2 Silent p.C909C 0.09 TCGA-DU-6392-01 12 110784072 110784072 G A ATP2A2 Missense_Mutation p.V976M 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 110788113 110788113 G A ATP2A2 3'Flank 0.29 TCGA-DU-6392-01 12 110872906 110872906 C A ARPC3 3'UTR 0.50 TCGA-DU-6392-01 12 110874914 110874914 G T ARPC3 Missense_Mutation p.S76Y 0.37 deleterious(0) benign(0.28) TCGA-DU-6392-01 12 110922992 110922992 G A FAM216A Silent p.A98A 0.10 TCGA-DU-6392-01 12 110927873 110927873 A C FAM216A Missense_Mutation p.E251D 0.11 tolerated_low_confidence(0.17) benign(0.034) TCGA-DU-6392-01 12 111099218 111099218 C A HVCN1 Missense_Mutation p.E19D 0.10 tolerated_low_confidence(0.07) benign(0.001) TCGA-DU-6392-01 12 111352092 111352092 G A MYL2 Nonsense_Mutation p.R58* 0.22 TCGA-DU-6392-01 12 11174713 11174713 A C TAS2R19 Missense_Mutation p.V153G 0.38 tolerated(0.05) benign(0.076) TCGA-DU-6392-01 12 111748382 111748382 G A CUX2 Missense_Mutation p.R599H 0.08 tolerated(0.43) possibly_damaging(0.479) TCGA-DU-6392-01 12 111785522 111785522 G T CUX2 Missense_Mutation p.S1285I 0.46 tolerated_low_confidence(0.33) benign(0) TCGA-DU-6392-01 12 111785894 111785894 C A CUX2 Missense_Mutation p.S1409Y 0.11 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-DU-6392-01 12 11214399 11214399 C A TAS2R46 Missense_Mutation p.K165N 0.29 tolerated(0.08) benign(0.169) TCGA-DU-6392-01 12 112174796 112174796 C T ACAD10 Nonsense_Mutation p.R599* 0.35 TCGA-DU-6392-01 12 112481451 112481451 C T NAA25 Missense_Mutation p.R743Q 0.31 tolerated(0.8) benign(0.001) TCGA-DU-6392-01 12 112506731 112506731 C A NAA25 Missense_Mutation p.D368Y 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 112518933 112518933 G A NAA25 Silent p.G136G 0.11 TCGA-DU-6392-01 12 112528603 112528603 C A NAA25 Missense_Mutation p.E70D 0.33 tolerated(0.1) benign(0.376) TCGA-DU-6392-01 12 112572608 112572608 G A TRAFD1 Missense_Mutation p.M38I 0.07 tolerated(0.2) benign(0.003) TCGA-DU-6392-01 12 112579001 112579001 G A TRAFD1 Missense_Mutation p.A206T 0.44 tolerated(0.34) benign(0.014) TCGA-DU-6392-01 12 112621023 112621023 G A HECTD4 Silent p.N3463N 0.42 TCGA-DU-6392-01 12 112622414 112622414 G A HECTD4 Silent p.D3306D 0.23 TCGA-DU-6392-01 12 112648057 112648057 C A HECTD4 Splice_Site p.X2398_splice 0.34 TCGA-DU-6392-01 12 112667652 112667652 T C HECTD4 Silent p.Q1977Q 0.11 TCGA-DU-6392-01 12 112673464 112673464 G A HECTD4 Silent p.L1711L 0.24 TCGA-DU-6392-01 12 112685974 112685974 C A HECTD4 Missense_Mutation p.S1236I 0.53 possibly_damaging(0.535) TCGA-DU-6392-01 12 112843140 112843140 G T RPL6 Missense_Mutation p.A252D 0.29 deleterious(0.05) possibly_damaging(0.598) TCGA-DU-6392-01 12 11286804 11286804 C A TAS2R30 Missense_Mutation p.V14L 0.34 tolerated(0.4) benign(0) TCGA-DU-6392-01 12 112919928 112919928 C T PTPN11 Silent p.G381G 0.34 TCGA-DU-6392-01 12 112926872 112926872 C T PTPN11 Missense_Mutation p.R498W 0.36 deleterious(0.01) benign(0.396) TCGA-DU-6392-01 12 113334590 113334590 G A RPH3A 3'UTR 0.24 TCGA-DU-6392-01 12 113553534 113553534 C A RASAL1 Missense_Mutation p.Q303H 0.22 deleterious(0) probably_damaging(0.967) TCGA-DU-6392-01 12 113554924 113554924 C A RASAL1 Missense_Mutation p.G229C 0.40 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 12 113600941 113600941 G A DDX54 Missense_Mutation p.R693W 0.37 deleterious(0) possibly_damaging(0.828) TCGA-DU-6392-01 12 113618863 113618863 G T DDX54 Missense_Mutation p.L59M 0.09 tolerated_low_confidence(0.13) benign(0.059) TCGA-DU-6392-01 12 113629341 113629341 G A RITA1 Missense_Mutation p.A177T 0.12 tolerated(0.26) benign(0.015) TCGA-DU-6392-01 12 113633583 113633583 G A IQCD Missense_Mutation p.R281W 0.41 deleterious(0) possibly_damaging(0.876) TCGA-DU-6392-01 12 113645772 113645772 G A IQCD Missense_Mutation p.T67I 0.36 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 12 113714766 113714766 C T TPCN1 Missense_Mutation p.R401C 0.36 tolerated(0.06) possibly_damaging(0.888) TCGA-DU-6392-01 12 113724881 113724881 G A TPCN1 Missense_Mutation p.R611H 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 114352798 114352798 C T RBM19 Missense_Mutation p.S845N 0.32 tolerated(0.51) benign(0.21) TCGA-DU-6392-01 12 114383697 114383697 G A RBM19 Missense_Mutation p.P521L 0.47 tolerated(0.31) benign(0.006) TCGA-DU-6392-01 12 11463274 11463274 C A PRB4 Missense_Mutation p.S20I 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-DU-6392-01 12 11545825 11545825 G A PRB2 Missense_Mutation p.A396V 0.06 tolerated_low_confidence(0.11) unknown(0) TCGA-DU-6392-01 12 116403926 116403926 C T MED13L Silent p.S2116S 0.35 TCGA-DU-6392-01 12 116413074 116413074 T C MED13L Missense_Mutation p.K1878R 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-DU-6392-01 12 116413113 116413113 C T MED13L Missense_Mutation p.R1865Q 0.09 deleterious(0) probably_damaging(0.94) TCGA-DU-6392-01 12 116418589 116418589 G A MED13L Missense_Mutation p.A1777V 0.26 tolerated(0.17) possibly_damaging(0.526) TCGA-DU-6392-01 12 116421083 116421083 C A MED13L Missense_Mutation p.Q1598H 0.12 tolerated(0.13) unknown(0) TCGA-DU-6392-01 12 116422120 116422120 G A MED13L Missense_Mutation p.R1466C 0.42 deleterious(0) unknown(0) TCGA-DU-6392-01 12 116425028 116425028 G A MED13L Missense_Mutation p.L1334F 0.31 deleterious(0) unknown(0) TCGA-DU-6392-01 12 116444176 116444176 C T MED13L Missense_Mutation p.G760D 0.36 deleterious(0.04) unknown(0) TCGA-DU-6392-01 12 116457747 116457747 G A MED13L Missense_Mutation p.T219M 0.20 deleterious(0) unknown(0) TCGA-DU-6392-01 12 116675279 116675279 G A MED13L Silent p.L102L 0.45 TCGA-DU-6392-01 12 117461972 117461972 G A FBXW8 Missense_Mutation p.R463H 0.09 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 12 117669819 117669819 G A NOS1 Missense_Mutation p.A1152V 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 12 117768386 117768386 G A NOS1 Silent p.Y163Y 0.43 TCGA-DU-6392-01 12 117962776 117962776 G A KSR2 Silent p.N700N 0.52 TCGA-DU-6392-01 12 118199236 118199236 G A KSR2 Missense_Mutation p.P189L 0.10 deleterious(0.03) benign(0.001) TCGA-DU-6392-01 12 118481168 118481168 A G WSB2 Missense_Mutation p.F66S 0.08 tolerated(0.5) benign(0.001) TCGA-DU-6392-01 12 118636871 118636871 G A TAOK3 Silent p.S393S 0.29 TCGA-DU-6392-01 12 120106187 120106187 C A PRKAB1 Silent p.L46L 0.16 TCGA-DU-6392-01 12 120173114 120173114 C T CIT Missense_Mutation p.A1003T 0.32 tolerated(0.2) benign(0.223) TCGA-DU-6392-01 12 12037475 12037475 G A ETV6 Missense_Mutation p.R369Q 0.25 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 12038938 12038938 C T ETV6 Missense_Mutation p.P411S 0.39 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 12 120436392 120436392 G A CCDC64 Missense_Mutation p.R166Q 0.31 deleterious(0.01) benign(0.11) TCGA-DU-6392-01 12 12044054 12044054 C T ETV6 3'UTR 0.42 TCGA-DU-6392-01 12 120502451 120502451 C A CCDC64 Intron 0.18 TCGA-DU-6392-01 12 120567270 120567270 C A GCN1L1 Missense_Mutation p.R2567M 0.07 possibly_damaging(0.695) TCGA-DU-6392-01 12 120613992 120613992 C T GCN1L1 Silent p.T289T 0.39 TCGA-DU-6392-01 12 120741693 120741693 T C SIRT4 Missense_Mutation p.F110S 0.18 deleterious(0) probably_damaging(0.934) TCGA-DU-6392-01 12 120783384 120783384 G A MSI1 3'UTR 0.15 TCGA-DU-6392-01 12 120899775 120899775 C T SRSF9 3'UTR 0.30 TCGA-DU-6392-01 12 120995185 120995185 T C RNF10 Missense_Mutation p.I249T 0.07 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 12 120995485 120995485 G T RNF10 Missense_Mutation p.D323Y 0.08 deleterious(0) possibly_damaging(0.627) TCGA-DU-6392-01 12 121014523 121014523 C T RNF10 3'UTR 0.32 TCGA-DU-6392-01 12 121442055 121442055 C A C12orf43 Missense_Mutation p.Q230H 0.07 tolerated(0.26) benign(0.01) TCGA-DU-6392-01 12 121461853 121461853 G A OASL Silent p.C329C 0.36 TCGA-DU-6392-01 12 121461900 121461900 C A OASL Missense_Mutation p.A314S 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-DU-6392-01 12 121666640 121666640 G A P2RX4 Missense_Mutation p.G256R 0.42 deleterious(0.01) possibly_damaging(0.656) TCGA-DU-6392-01 12 121746350 121746350 G A ANAPC5 Missense_Mutation p.A734V 0.34 deleterious(0) possibly_damaging(0.802) TCGA-DU-6392-01 12 121756220 121756220 G A ANAPC5 Silent p.L585L 0.38 TCGA-DU-6392-01 12 121783770 121783770 C T ANAPC5 Silent p.L154L 0.11 TCGA-DU-6392-01 12 121784789 121784789 C A ANAPC5 Missense_Mutation p.G103C 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 12 121877673 121877673 C A KDM2B Missense_Mutation p.E1272D 0.47 tolerated(0.19) benign(0.015) TCGA-DU-6392-01 12 121882002 121882002 C T KDM2B Missense_Mutation p.R755Q 0.30 deleterious(0.02) possibly_damaging(0.649) TCGA-DU-6392-01 12 122097205 122097205 G A MORN3 Silent p.D65D 0.13 TCGA-DU-6392-01 12 122217535 122217535 G A RHOF Missense_Mutation p.L169F 0.24 tolerated(0.34) possibly_damaging(0.711) TCGA-DU-6392-01 12 122337707 122337707 G A PSMD9 Missense_Mutation p.A137T 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 12 122497146 122497146 C T BCL7A 3'UTR 0.27 TCGA-DU-6392-01 12 122656969 122656969 G A IL31 Missense_Mutation p.A162V 0.38 tolerated_low_confidence(0.17) probably_damaging(0.97) TCGA-DU-6392-01 12 122691477 122691477 A G B3GNT4 Missense_Mutation p.N227D 0.52 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 122693109 122693109 G T DIABLO Missense_Mutation p.S180Y 0.44 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 12 122709222 122709222 C T DIABLO Intron 0.30 TCGA-DU-6392-01 12 122716793 122716793 C A VPS33A Nonstop_Mutation p.*597Yext*13 0.40 TCGA-DU-6392-01 12 122716899 122716899 C T VPS33A Missense_Mutation p.R562Q 0.38 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 12 122812815 122812815 G A CLIP1 Missense_Mutation p.S1009L 0.39 tolerated(0.35) benign(0.001) TCGA-DU-6392-01 12 122862245 122862245 G A CLIP1 Silent p.G116G 0.34 TCGA-DU-6392-01 12 122862486 122862487 - T CLIP1 Frame_Shift_Ins p.T36Nfs*5 0.09 TCGA-DU-6392-01 12 12288148 12288148 T C LRP6 Missense_Mutation p.M1232V 0.09 tolerated(1) benign(0) TCGA-DU-6392-01 12 12291271 12291271 G T LRP6 Missense_Mutation p.L1199I 0.07 tolerated(0.49) benign(0) TCGA-DU-6392-01 12 122958464 122958464 C T ZCCHC8 Silent p.P568P 0.37 TCGA-DU-6392-01 12 122990173 122990173 A C RSRC2 Missense_Mutation p.N402K 0.35 tolerated(0.1) unknown(0) TCGA-DU-6392-01 12 123047224 123047224 G A KNTC1 Missense_Mutation p.A528T 0.38 tolerated(0.11) probably_damaging(0.977) TCGA-DU-6392-01 12 123067323 123067323 G A KNTC1 Silent p.Q1018Q 0.36 TCGA-DU-6392-01 12 12312848 12312848 G A LRP6 Missense_Mutation p.A777V 0.11 tolerated(0.5) benign(0.139) TCGA-DU-6392-01 12 123186810 123186810 C T HCAR2 Missense_Mutation p.A341T 0.32 tolerated_low_confidence(0.49) benign(0.036) TCGA-DU-6392-01 12 123214100 123214100 T C HCAR1 Missense_Mutation p.T263A 0.46 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 123286229 123286229 C A CCDC62 Missense_Mutation p.D512E 0.33 tolerated(1) benign(0.004) TCGA-DU-6392-01 12 123335813 123335813 C T HIP1R Silent p.Y182Y 0.38 TCGA-DU-6392-01 12 123345497 123345497 G A HIP1R Missense_Mutation p.R934H 0.29 tolerated(0.06) benign(0.233) TCGA-DU-6392-01 12 123428988 123428988 T C ABCB9 Missense_Mutation p.N444D 0.09 tolerated(0.19) benign(0.012) TCGA-DU-6392-01 12 123477114 123477114 G T PITPNM2 Missense_Mutation p.A779D 0.14 tolerated(0.4) possibly_damaging(0.661) TCGA-DU-6392-01 12 123789129 123789129 C A SBNO1 Missense_Mutation p.K1256N 0.15 deleterious(0) possibly_damaging(0.885) TCGA-DU-6392-01 12 123812039 123812039 G T SBNO1 Silent p.T542T 0.28 TCGA-DU-6392-01 12 123900468 123900468 C A RILPL2 Silent p.L202L 0.37 TCGA-DU-6392-01 12 123950644 123950644 G A SNRNP35 Missense_Mutation p.R191Q 0.37 tolerated(0.26) possibly_damaging(0.856) TCGA-DU-6392-01 12 123950896 123950896 G A SNRNP35 3'Flank 0.32 TCGA-DU-6392-01 12 124094552 124094552 G A DDX55 Silent p.T206T 0.37 TCGA-DU-6392-01 12 124171495 124171495 G A TCTN2 Missense_Mutation p.R226H 0.38 tolerated(0.41) benign(0.004) TCGA-DU-6392-01 12 124179474 124179474 T C TCTN2 Silent p.S395S 0.14 TCGA-DU-6392-01 12 124180977 124180977 A C TCTN2 Missense_Mutation p.K443T 0.40 deleterious(0) possibly_damaging(0.906) TCGA-DU-6392-01 12 124268500 124268500 G T DNAH10 Missense_Mutation p.G275C 0.34 probably_damaging(1) TCGA-DU-6392-01 12 124283889 124283889 G T DNAH10 Missense_Mutation p.A636S 0.09 benign(0.009) TCGA-DU-6392-01 12 124285903 124285903 G A DNAH10 Silent p.V728V 0.07 TCGA-DU-6392-01 12 124332541 124332541 G A DNAH10 Missense_Mutation p.G1832S 0.31 probably_damaging(1) TCGA-DU-6392-01 12 124421701 124421701 C T CCDC92 Silent p.P300P 0.43 TCGA-DU-6392-01 12 124812048 124812048 C T NCOR2 Missense_Mutation p.A2364T 0.36 probably_damaging(0.999) TCGA-DU-6392-01 12 124817694 124817694 C A NCOR2 Missense_Mutation p.G2246V 0.14 probably_damaging(1) TCGA-DU-6392-01 12 124870300 124870300 C T NCOR2 Silent p.K670K 0.41 TCGA-DU-6392-01 12 124950731 124950731 G A NCOR2 Silent p.Y231Y 0.39 TCGA-DU-6392-01 12 125270966 125270966 G A SCARB1 Silent p.Y446Y 0.43 TCGA-DU-6392-01 12 125302182 125302182 G A SCARB1 Silent p.S66S 0.15 TCGA-DU-6392-01 12 125397435 125397435 G T UBC Missense_Mutation p.L295M 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-DU-6392-01 12 125587292 125587292 A C AACS Missense_Mutation p.N213T 0.44 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 12 126004064 126004064 A G TMEM132B Missense_Mutation p.I391V 0.09 tolerated(0.49) benign(0.034) TCGA-DU-6392-01 12 126128633 126128633 C T TMEM132B Silent p.N478N 0.22 TCGA-DU-6392-01 12 12630810 12630810 G A DUSP16 Missense_Mutation p.P319S 0.34 tolerated(0.46) benign(0.001) TCGA-DU-6392-01 12 1291148 1291148 G T ERC1 Nonsense_Mutation p.E645* 0.19 TCGA-DU-6392-01 12 129299482 129299482 G A SLC15A4 Missense_Mutation p.A227V 0.36 tolerated(0.53) benign(0.009) TCGA-DU-6392-01 12 129467473 129467473 G T GLT1D1 Splice_Site p.X214_splice 0.31 TCGA-DU-6392-01 12 129558831 129558831 G T TMEM132D Missense_Mutation p.D963E 0.10 deleterious(0) benign(0.388) TCGA-DU-6392-01 12 12976874 12976874 A C DDX47 Missense_Mutation p.N274T 0.41 tolerated(0.35) benign(0.005) TCGA-DU-6392-01 12 130184368 130184368 G A TMEM132D Missense_Mutation p.R319C 0.38 tolerated(0.19) possibly_damaging(0.594) TCGA-DU-6392-01 12 130185167 130185167 G A TMEM132D Silent p.H52H 0.33 TCGA-DU-6392-01 12 130649218 130649218 G A FZD10 Silent p.S577S 0.38 TCGA-DU-6392-01 12 130855859 130855859 C T PIWIL1 Silent p.Y820Y 0.44 TCGA-DU-6392-01 12 130912849 130912849 C A RIMBP2 Nonsense_Mutation p.E746* 0.28 TCGA-DU-6392-01 12 130926933 130926933 G T RIMBP2 Missense_Mutation p.L305I 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-DU-6392-01 12 131291536 131291536 G A STX2 Silent p.L152L 0.29 TCGA-DU-6392-01 12 131593422 131593422 G T GPR133 Missense_Mutation p.G681C 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 132212924 132212924 C T SFSWAP Silent p.N344N 0.34 TCGA-DU-6392-01 12 13238070 13238070 T G GSG1 Missense_Mutation p.K262T 0.46 deleterious(0.03) benign(0.287) TCGA-DU-6392-01 12 13241674 13241674 G A GSG1 Intron 0.35 TCGA-DU-6392-01 12 132426280 132426280 G A PUS1 Missense_Mutation p.G330R 0.46 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 132448119 132448119 G A EP400 Intron 0.34 TCGA-DU-6392-01 12 132491285 132491285 G A EP400 Missense_Mutation p.R1056K 0.42 unknown(0) TCGA-DU-6392-01 12 132537755 132537755 G A EP400 Missense_Mutation p.A2487T 0.37 unknown(0) TCGA-DU-6392-01 12 132681707 132681707 C A GALNT9 Missense_Mutation p.R220M 0.15 deleterious(0.02) probably_damaging(0.971) TCGA-DU-6392-01 12 132688117 132688117 C T GALNT9 Missense_Mutation p.R33H 0.43 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 133201533 133201533 G A POLE Silent p.Y2235Y 0.45 TCGA-DU-6392-01 12 133202895 133202895 G A POLE Silent p.S2113S 0.22 TCGA-DU-6392-01 12 133219227 133219227 A T POLE Missense_Mutation p.F1606Y 0.16 deleterious(0) probably_damaging(0.913) TCGA-DU-6392-01 12 133219468 133219468 G A POLE Missense_Mutation p.R1556W 0.37 deleterious(0.02) possibly_damaging(0.901) TCGA-DU-6392-01 12 133226432 133226432 G T POLE Missense_Mutation p.A1209D 0.37 tolerated(0.56) benign(0.001) TCGA-DU-6392-01 12 133241015 133241015 G A POLE Silent p.I834I 0.42 TCGA-DU-6392-01 12 133249410 133249410 A G POLE Missense_Mutation p.S497P 0.29 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 12 133253151 133253151 G T POLE Missense_Mutation p.S297Y 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 133324479 133324479 G A ANKLE2 Missense_Mutation p.A390V 0.39 tolerated(0.33) benign(0.07) TCGA-DU-6392-01 12 133327369 133327369 C T ANKLE2 Missense_Mutation p.R236Q 0.36 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 12 133381515 133381515 G A GOLGA3 Missense_Mutation p.R462W 0.48 deleterious(0) possibly_damaging(0.683) TCGA-DU-6392-01 12 133385045 133385045 G T GOLGA3 Missense_Mutation p.L204M 0.09 deleterious_low_confidence(0.01) benign(0.33) TCGA-DU-6392-01 12 13366719 13366719 C T EMP1 Missense_Mutation p.R94W 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 133682649 133682649 A T ZNF140 Silent p.R262R 0.40 TCGA-DU-6392-01 12 133682774 133682774 T A ZNF140 Missense_Mutation p.I304N 0.12 tolerated(0.26) benign(0.009) TCGA-DU-6392-01 12 14659096 14659096 C A PLBD1 Missense_Mutation p.K493N 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 14706205 14706205 G A PLBD1 Missense_Mutation p.A86V 0.19 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 14805895 14805895 G A GUCY2C Silent p.Y508Y 0.38 TCGA-DU-6392-01 12 14840925 14840925 C T GUCY2C Missense_Mutation p.S97N 0.45 deleterious(0) probably_damaging(0.952) TCGA-DU-6392-01 12 14952649 14952649 C T WBP11 Missense_Mutation p.R37H 0.45 deleterious(0.04) unknown(0) TCGA-DU-6392-01 12 14976519 14976519 C T C12orf60 Missense_Mutation p.A217V 0.10 tolerated(0.19) benign(0.032) TCGA-DU-6392-01 12 15035207 15035207 C A MGP Nonsense_Mutation p.E85* 0.10 TCGA-DU-6392-01 12 15262092 15262092 C T RERG Silent p.T184T 0.07 TCGA-DU-6392-01 12 15654589 15654589 G A PTPRO Missense_Mutation p.V233I 0.39 tolerated_low_confidence(0.31) benign(0.001) TCGA-DU-6392-01 12 15668485 15668485 G T PTPRO Missense_Mutation p.Q506H 0.09 deleterious(0.01) possibly_damaging(0.83) TCGA-DU-6392-01 12 16704154 16704154 G T LMO3 3'UTR 0.11 TCGA-DU-6392-01 12 1755144 1755144 G A WNT5B Missense_Mutation p.R269H 0.32 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 18234205 18234205 C A RERGL Nonsense_Mutation p.E180* 0.28 TCGA-DU-6392-01 12 18435201 18435201 C A PIK3C2G Silent p.T62T 0.09 TCGA-DU-6392-01 12 1863574 1863574 G T ADIPOR2 Missense_Mutation p.R22I 0.09 tolerated(0.07) benign(0.147) TCGA-DU-6392-01 12 18691180 18691180 A G PIK3C2G Silent p.E1097E 0.44 TCGA-DU-6392-01 12 18837124 18837124 A C PLCZ1 Missense_Mutation p.L561V 0.39 tolerated(0.51) benign(0.023) TCGA-DU-6392-01 12 1887032 1887032 C T ADIPOR2 Missense_Mutation p.R102W 0.33 deleterious(0.04) possibly_damaging(0.582) TCGA-DU-6392-01 12 18891391 18891391 C A CAPZA3 Silent p.L63L 0.28 TCGA-DU-6392-01 12 18891730 18891730 C T CAPZA3 Silent p.F176F 0.09 TCGA-DU-6392-01 12 1889674 1889674 T A ADIPOR2 Missense_Mutation p.F174Y 0.07 tolerated(0.06) benign(0.25) TCGA-DU-6392-01 12 1909168 1909168 T C CACNA2D4 Missense_Mutation p.E991G 0.50 tolerated(0.08) benign(0.071) TCGA-DU-6392-01 12 20803455 20803455 C A PDE3A Missense_Mutation p.A949D 0.40 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 12 21015771 21015771 T C SLCO1B3 Missense_Mutation p.I237T 0.32 deleterious(0.01) possibly_damaging(0.612) TCGA-DU-6392-01 12 21030736 21030736 C T SLCO1B3 Missense_Mutation p.T334I 0.25 tolerated(0.06) benign(0.213) TCGA-DU-6392-01 12 21069117 21069117 C T SLCO1B3 Missense_Mutation p.P682L 0.29 deleterious(0.01) benign(0.272) TCGA-DU-6392-01 12 21207494 21207494 G A SLCO1B7 Missense_Mutation p.V489I 0.39 tolerated(0.54) benign(0.001) TCGA-DU-6392-01 12 21229457 21229457 T C SLCO1B7 Missense_Mutation p.C560R 0.40 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 12 21644539 21644539 G A RECQL Missense_Mutation p.T43I 0.10 tolerated(0.18) benign(0.042) TCGA-DU-6392-01 12 21790067 21790067 C T LDHB Missense_Mutation p.D259N 0.41 tolerated(0.17) benign(0.335) TCGA-DU-6392-01 12 21919215 21919215 C A KCNJ8 Missense_Mutation p.E239D 0.27 deleterious(0.01) probably_damaging(0.943) TCGA-DU-6392-01 12 21998712 21998712 C A ABCC9 Missense_Mutation p.R974M 0.33 deleterious(0.01) possibly_damaging(0.707) TCGA-DU-6392-01 12 22001153 22001153 C A ABCC9 Nonsense_Mutation p.E933* 0.45 TCGA-DU-6392-01 12 22005070 22005070 C T ABCC9 Nonsense_Mutation p.W910* 0.42 TCGA-DU-6392-01 12 22068693 22068693 G T ABCC9 Missense_Mutation p.P242H 0.32 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 12 22218057 22218057 A G CMAS Missense_Mutation p.N373D 0.36 tolerated(0.33) benign(0.436) TCGA-DU-6392-01 12 22680720 22680720 G T C2CD5 Missense_Mutation p.P95H 0.09 deleterious(0) probably_damaging(0.959) TCGA-DU-6392-01 12 23687228 23687228 G A SOX5 Silent p.Y739Y 0.39 TCGA-DU-6392-01 12 23908572 23908572 C A SOX5 Missense_Mutation p.G190W 0.13 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 24736568 24736568 A T LINC00477 RNA 0.37 TCGA-DU-6392-01 12 25002836 25002836 G T BCAT1 Silent p.L198L 0.33 TCGA-DU-6392-01 12 25255145 25255146 - A LRMP Frame_Shift_Ins p.R304Tfs*36 0.33 TCGA-DU-6392-01 12 25261120 25261120 G T LRMP 3'UTR 0.25 TCGA-DU-6392-01 12 25357176 25357176 C T LYRM5 Missense_Mutation p.A68V 0.10 deleterious(0.02) probably_damaging(0.954) TCGA-DU-6392-01 12 25398280 25398280 G A KRAS Silent p.G13G 0.18 TCGA-DU-6392-01 12 26277743 26277744 - T BHLHE41 5'UTR 0.29 TCGA-DU-6392-01 12 26383894 26383894 G A SSPN Missense_Mutation p.G206D 0.34 deleterious(0) benign(0.328) TCGA-DU-6392-01 12 26383931 26383931 A G SSPN Silent p.K218K 0.40 TCGA-DU-6392-01 12 26493197 26493197 C T ITPR2 Missense_Mutation p.S2641N 0.10 tolerated(0.12) benign(0.002) TCGA-DU-6392-01 12 2656628 2656628 C T CACNA1C Intron 0.42 TCGA-DU-6392-01 12 26580872 26580872 T C ITPR2 Missense_Mutation p.T2307A 0.34 tolerated(0.1) possibly_damaging(0.64) TCGA-DU-6392-01 12 26628240 26628240 G T ITPR2 Missense_Mutation p.L2111M 0.33 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 12 26636744 26636744 T C ITPR2 Missense_Mutation p.T1967A 0.09 deleterious(0) possibly_damaging(0.863) TCGA-DU-6392-01 12 26648141 26648141 C T ITPR2 Missense_Mutation p.S1709N 0.41 tolerated(0.49) benign(0.001) TCGA-DU-6392-01 12 266718 266718 C T IQSEC3 Silent p.P767P 0.36 TCGA-DU-6392-01 12 266833 266833 C T IQSEC3 Silent p.L806L 0.08 TCGA-DU-6392-01 12 26755303 26755303 C A ITPR2 Missense_Mutation p.K1226N 0.10 deleterious(0) probably_damaging(0.911) TCGA-DU-6392-01 12 26777268 26777268 T C ITPR2 Missense_Mutation p.E1029G 0.09 tolerated(0.17) benign(0.065) TCGA-DU-6392-01 12 26809236 26809236 A G ITPR2 Missense_Mutation p.I813T 0.08 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 12 27070659 27070659 C T ASUN Silent p.S299S 0.29 TCGA-DU-6392-01 12 272684 272684 C A IQSEC3 Missense_Mutation p.L870M 0.43 deleterious(0) probably_damaging(0.943) TCGA-DU-6392-01 12 27521253 27521253 T C ARNTL2 Silent p.S30S 0.41 TCGA-DU-6392-01 12 2774794 2774794 G A CACNA1C Silent p.L1530L 0.36 TCGA-DU-6392-01 12 27841240 27841240 G A PPFIBP1 Missense_Mutation p.A800T 0.11 tolerated(0.92) benign(0.001) TCGA-DU-6392-01 12 27933542 27933542 C T KLHL42 Silent p.D93D 0.36 TCGA-DU-6392-01 12 27944687 27944687 G A KLHL42 Missense_Mutation p.G307R 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 28605515 28605515 A G CCDC91 Silent p.E343E 0.27 TCGA-DU-6392-01 12 2910319 2910319 T C FKBP4 Missense_Mutation p.F357L 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 2930857 2930857 G T ITFG2 Splice_Site p.X283_splice 0.41 TCGA-DU-6392-01 12 2931989 2931989 C T ITFG2 Silent p.C326C 0.29 TCGA-DU-6392-01 12 29496212 29496212 G A ERGIC2 Missense_Mutation p.R277C 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 12 29604283 29604283 G A OVCH1 Missense_Mutation p.T917M 0.28 tolerated(0.73) benign(0.001) TCGA-DU-6392-01 12 29607774 29607774 C T OVCH1 Missense_Mutation p.G844S 0.36 tolerated(0.16) benign(0.068) TCGA-DU-6392-01 12 29624883 29624883 A G OVCH1 Missense_Mutation p.W570R 0.26 tolerated(0.15) benign(0.221) TCGA-DU-6392-01 12 2977736 2977736 C T FOXM1 Missense_Mutation p.G280D 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 301737 301737 G A SLC6A12 Silent p.Y536Y 0.34 TCGA-DU-6392-01 12 3039511 3039511 C T TULP3 Silent p.T164T 0.22 TCGA-DU-6392-01 12 3047393 3047393 C T TULP3 Silent p.F379F 0.40 TCGA-DU-6392-01 12 306028 306028 C T SLC6A12 Missense_Mutation p.A366T 0.14 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 12 31236770 31236770 T C DDX11 Silent p.C56C 0.09 TCGA-DU-6392-01 12 31244760 31244760 C T DDX11 Silent p.I399I 0.21 TCGA-DU-6392-01 12 31255888 31255888 C T DDX11 Silent p.G797G 0.11 TCGA-DU-6392-01 12 31256654 31256654 G A DDX11 Missense_Mutation p.C892Y 0.43 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-DU-6392-01 12 31269385 31269385 C T RP11-551L14.1 RNA 0.41 TCGA-DU-6392-01 12 3128322 3128322 C T TEAD4 Missense_Mutation p.P190L 0.36 deleterious(0.01) benign(0.212) TCGA-DU-6392-01 12 31446798 31446798 G T FAM60A Missense_Mutation p.S99Y 0.20 deleterious(0.02) benign(0.351) TCGA-DU-6392-01 12 31605026 31605026 G T DENND5B Missense_Mutation p.L493I 0.08 tolerated(0.2) benign(0.014) TCGA-DU-6392-01 12 31819145 31819145 G T METTL20 Missense_Mutation p.D147Y 0.20 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 318999 318999 C A SLC6A12 Nonsense_Mutation p.E52* 0.29 TCGA-DU-6392-01 12 31944956 31944956 G A H3F3C Nonsense_Mutation p.R49* 0.44 TCGA-DU-6392-01 12 32135497 32135497 G T KIAA1551 Missense_Mutation p.Q536H 0.33 tolerated(0.07) benign(0.037) TCGA-DU-6392-01 12 32135951 32135951 G A KIAA1551 Missense_Mutation p.A688T 0.10 tolerated(1) benign(0) TCGA-DU-6392-01 12 32369275 32369275 C T BICD1 Missense_Mutation p.A103V 0.31 deleterious(0) possibly_damaging(0.794) TCGA-DU-6392-01 12 32793451 32793451 A C FGD4 Missense_Mutation p.K762T 0.09 tolerated_low_confidence(0.09) benign(0.002) TCGA-DU-6392-01 12 32854484 32854484 G T DNM1L Nonsense_Mutation p.G80* 0.26 TCGA-DU-6392-01 12 32871622 32871622 C T DNM1L Missense_Mutation p.A222V 0.38 tolerated(0.12) benign(0.158) TCGA-DU-6392-01 12 32897950 32897950 T C DNM1L 3'Flank 0.11 TCGA-DU-6392-01 12 32898020 32898020 C T DNM1L 3'Flank 0.33 TCGA-DU-6392-01 12 33030843 33030843 G T PKP2 Missense_Mutation p.A324E 0.45 tolerated(0.13) possibly_damaging(0.594) TCGA-DU-6392-01 12 33031425 33031425 T C PKP2 Missense_Mutation p.Y130C 0.05 deleterious(0.01) probably_damaging(0.959) TCGA-DU-6392-01 12 33535302 33535302 G A SYT10 Missense_Mutation p.A451V 0.43 tolerated(0.05) possibly_damaging(0.501) TCGA-DU-6392-01 12 34178815 34178815 G A ALG10 Silent p.Q129Q 0.39 TCGA-DU-6392-01 12 34179975 34179976 - T ALG10 3'UTR 0.33 TCGA-DU-6392-01 12 3788249 3788249 C T EFCAB4B Missense_Mutation p.S119N 0.41 tolerated(0.23) benign(0.017) TCGA-DU-6392-01 12 3788265 3788265 C A EFCAB4B Splice_Site p.X114_splice 0.31 TCGA-DU-6392-01 12 38712126 38712126 G A ALG10B Missense_Mutation p.A79T 0.36 tolerated(0.32) benign(0.196) TCGA-DU-6392-01 12 38714922 38714922 C A ALG10B Nonsense_Mutation p.C443* 0.38 TCGA-DU-6392-01 12 39233749 39233749 A G CPNE8 Missense_Mutation p.V100A 0.16 tolerated(0.08) benign(0.257) TCGA-DU-6392-01 12 39763653 39763653 C A KIF21A Nonsense_Mutation p.E110* 0.09 TCGA-DU-6392-01 12 40020150 40020150 C T C12orf40 Silent p.V4V 0.57 TCGA-DU-6392-01 12 40078672 40078672 A G C12orf40 Silent p.G430G 0.10 TCGA-DU-6392-01 12 40158579 40158579 T C SLC2A13 Silent p.A509A 0.14 TCGA-DU-6392-01 12 40258676 40258676 C T SLC2A13 Missense_Mutation p.V403I 0.39 tolerated(0.39) benign(0.053) TCGA-DU-6392-01 12 40345164 40345164 C A SLC2A13 Missense_Mutation p.G310V 0.23 deleterious(0.02) possibly_damaging(0.625) TCGA-DU-6392-01 12 40671969 40671969 C T LRRK2 Missense_Mutation p.A716V 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 40681204 40681204 C A LRRK2 Missense_Mutation p.A851D 0.35 tolerated(0.49) benign(0.04) TCGA-DU-6392-01 12 40688680 40688680 C T LRRK2 Nonsense_Mutation p.R948* 0.22 TCGA-DU-6392-01 12 40692959 40692959 G T LRRK2 Missense_Mutation p.K1132N 0.44 deleterious(0.04) possibly_damaging(0.744) TCGA-DU-6392-01 12 40722196 40722196 C A LRRK2 Silent p.A1897A 0.40 TCGA-DU-6392-01 12 41419010 41419010 G A CNTN1 Missense_Mutation p.S861N 0.21 tolerated(0.17) benign(0.003) TCGA-DU-6392-01 12 41966493 41966493 C T PDZRN4 Nonsense_Mutation p.R638* 0.46 TCGA-DU-6392-01 12 41966991 41966991 G A PDZRN4 Missense_Mutation p.A804T 0.37 tolerated(0.6) benign(0) TCGA-DU-6392-01 12 42491368 42491368 C T GXYLT1 Missense_Mutation p.C346Y 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 42729702 42729702 G A PPHLN1 5'UTR 0.35 TCGA-DU-6392-01 12 42729720 42729720 C T PPHLN1 Nonsense_Mutation p.R6* 0.48 TCGA-DU-6392-01 12 42778746 42778746 C T PPHLN1 Silent p.S172S 0.29 TCGA-DU-6392-01 12 42840048 42840048 T C PPHLN1 Silent p.L436L 0.32 TCGA-DU-6392-01 12 42854319 42854319 C A PRICKLE1 Missense_Mutation p.K596N 0.40 tolerated(0.16) benign(0.002) TCGA-DU-6392-01 12 42860069 42860069 G A PRICKLE1 Silent p.D234D 0.10 TCGA-DU-6392-01 12 44139908 44139909 - T PUS7L Frame_Shift_Ins p.Q402Tfs*4 0.33 TCGA-DU-6392-01 12 44148951 44148951 T C PUS7L Missense_Mutation p.D33G 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 45108472 45108472 G T NELL2 Silent p.V399V 0.29 TCGA-DU-6392-01 12 45269650 45269650 C A NELL2 Missense_Mutation p.M51I 0.35 tolerated_low_confidence(0.1) possibly_damaging(0.48) TCGA-DU-6392-01 12 45567556 45567556 G A PLEKHA8P1 RNA 0.34 TCGA-DU-6392-01 12 45810504 45810504 C A ANO6 Silent p.T699T 0.33 TCGA-DU-6392-01 12 459813 459813 G A KDM5A Missense_Mutation p.R428W 0.32 deleterious(0) possibly_damaging(0.631) TCGA-DU-6392-01 12 4600386 4600386 G T C12orf4 Silent p.P485P 0.39 TCGA-DU-6392-01 12 46211663 46211663 T C ARID2 Missense_Mutation p.F210S 0.17 deleterious(0) possibly_damaging(0.773) TCGA-DU-6392-01 12 46231168 46231168 T C ARID2 Missense_Mutation p.L363P 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 46233126 46233126 C A ARID2 Missense_Mutation p.L449M 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-DU-6392-01 12 46244955 46244955 C T ARID2 Missense_Mutation p.H1017Y 0.32 tolerated_low_confidence(0.18) benign(0.265) TCGA-DU-6392-01 12 46245184 46245184 C A ARID2 Missense_Mutation p.P1093H 0.11 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-DU-6392-01 12 46245654 46245654 G A ARID2 Missense_Mutation p.A1250T 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-6392-01 12 46246095 46246095 G T ARID2 Missense_Mutation p.G1397W 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.766) TCGA-DU-6392-01 12 46246205 46246205 G T ARID2 Missense_Mutation p.E1433D 0.08 tolerated_low_confidence(0.27) benign(0.011) TCGA-DU-6392-01 12 46246368 46246368 G A ARID2 Missense_Mutation p.D1488N 0.34 tolerated_low_confidence(0.51) benign(0) TCGA-DU-6392-01 12 46320202 46320202 T A SCAF11 Missense_Mutation p.E1094D 0.09 deleterious(0.03) possibly_damaging(0.719) TCGA-DU-6392-01 12 46321294 46321294 T G SCAF11 Missense_Mutation p.E730D 0.40 deleterious(0.03) possibly_damaging(0.695) TCGA-DU-6392-01 12 46326922 46326922 T C SCAF11 Silent p.G242G 0.37 TCGA-DU-6392-01 12 464374 464374 C T KDM5A Missense_Mutation p.A274T 0.32 tolerated(0.36) benign(0.018) TCGA-DU-6392-01 12 46594935 46594935 C T SLC38A1 Missense_Mutation p.A317T 0.31 deleterious(0.04) possibly_damaging(0.769) TCGA-DU-6392-01 12 46754857 46754857 C T SLC38A2 3'UTR 0.43 TCGA-DU-6392-01 12 47472371 47472371 C T AMIGO2 Missense_Mutation p.E139K 0.36 tolerated(0.11) probably_damaging(0.999) TCGA-DU-6392-01 12 47472640 47472640 G A AMIGO2 Missense_Mutation p.T49I 0.16 deleterious(0) possibly_damaging(0.827) TCGA-DU-6392-01 12 47629976 47629976 C A PCED1B Missense_Mutation p.P377H 0.23 deleterious(0) possibly_damaging(0.894) TCGA-DU-6392-01 12 4763994 4763994 G A NDUFA9 Missense_Mutation p.R75H 0.37 deleterious(0) possibly_damaging(0.901) TCGA-DU-6392-01 12 4764024 4764024 G A NDUFA9 Missense_Mutation p.R85Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 12 4791407 4791407 C T NDUFA9 Silent p.Y279Y 0.42 TCGA-DU-6392-01 12 48110168 48110168 C A ENDOU Missense_Mutation p.Q222H 0.09 deleterious(0.02) possibly_damaging(0.566) TCGA-DU-6392-01 12 48110685 48110685 C T ENDOU Missense_Mutation p.R180H 0.76 tolerated(0.56) benign(0.005) TCGA-DU-6392-01 12 48131349 48131349 C A RAPGEF3 3'UTR 0.50 TCGA-DU-6392-01 12 48141499 48141499 A T RAPGEF3 Missense_Mutation p.L490H 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 48177541 48177541 A G HDAC7 3'UTR 0.40 TCGA-DU-6392-01 12 48251023 48251023 G A VDR Missense_Mutation p.R208C 0.31 tolerated(0.05) probably_damaging(0.969) TCGA-DU-6392-01 12 48272720 48272720 C T VDR Intron 0.24 TCGA-DU-6392-01 12 48361031 48361031 G C TMEM106C Missense_Mutation p.V215L 0.09 tolerated(0.32) benign(0.058) TCGA-DU-6392-01 12 48367317 48367317 C T COL2A1 Missense_Mutation p.G1446D 0.33 unknown(0) TCGA-DU-6392-01 12 48374399 48374399 C T COL2A1 Missense_Mutation p.G855S 0.42 unknown(0) TCGA-DU-6392-01 12 48379542 48379542 C T COL2A1 Missense_Mutation p.R550H 0.24 possibly_damaging(0.587) TCGA-DU-6392-01 12 48596366 48596366 T G OR10AD1 Missense_Mutation p.K237T 0.38 deleterious(0) probably_damaging(0.971) TCGA-DU-6392-01 12 4872542 4872542 G A GALNT8 Missense_Mutation p.V495M 0.43 deleterious(0.02) possibly_damaging(0.693) TCGA-DU-6392-01 12 48741014 48741014 G A ZNF641 Intron 0.42 TCGA-DU-6392-01 12 48866754 48866754 C A ANP32D Missense_Mutation p.L103I 0.42 tolerated(0.59) possibly_damaging(0.727) TCGA-DU-6392-01 12 49048248 49048248 C A KANSL2 Intron 0.10 TCGA-DU-6392-01 12 49061252 49061252 C A KANSL2 Intron 0.36 TCGA-DU-6392-01 12 49224261 49224261 G T DDX23 Silent p.I818I 0.11 TCGA-DU-6392-01 12 49230527 49230527 T C DDX23 Missense_Mutation p.D354G 0.08 tolerated(0.08) probably_damaging(0.947) TCGA-DU-6392-01 12 49239515 49239515 C A DDX23 Missense_Mutation p.K17N 0.47 deleterious_low_confidence(0.01) unknown(0) TCGA-DU-6392-01 12 49251978 49251978 C T RND1 Missense_Mutation p.G167D 0.27 deleterious(0) benign(0.135) TCGA-DU-6392-01 12 49298804 49298804 C T CCDC65 Missense_Mutation p.R70W 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 49312551 49312551 G T CCDC65 Missense_Mutation p.K297N 0.13 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 12 49396702 49396702 C A PRKAG1 Missense_Mutation p.G335C 0.29 deleterious_low_confidence(0.04) benign(0.439) TCGA-DU-6392-01 12 49437698 49437698 C T KMT2D Missense_Mutation p.G1758R 0.44 probably_damaging(0.983) TCGA-DU-6392-01 12 49442974 49442974 G A KMT2D Missense_Mutation p.R1312C 0.33 probably_damaging(0.997) TCGA-DU-6392-01 12 49444195 49444195 C T KMT2D Missense_Mutation p.G1059E 0.33 benign(0.008) TCGA-DU-6392-01 12 49445725 49445725 T C KMT2D Missense_Mutation p.M581V 0.06 unknown(0) TCGA-DU-6392-01 12 49445789 49445789 C A KMT2D Missense_Mutation p.E559D 0.43 unknown(0) TCGA-DU-6392-01 12 49449062 49449062 C T KMT2D Missense_Mutation p.A16T 0.29 unknown(0) TCGA-DU-6392-01 12 49580426 49580426 G A TUBA1A Missense_Mutation p.A65V 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.823) TCGA-DU-6392-01 12 49691175 49691175 G T PRPH Missense_Mutation p.E344D 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 12 49724763 49724763 G T TROAP Intron 0.47 TCGA-DU-6392-01 12 49918607 49918607 A C SPATS2 Missense_Mutation p.K418N 0.41 deleterious(0.01) possibly_damaging(0.632) TCGA-DU-6392-01 12 49950198 49950198 G A KCNH3 Silent p.K838K 0.35 TCGA-DU-6392-01 12 49950231 49950231 A G KCNH3 Silent p.E849E 0.15 TCGA-DU-6392-01 12 49951812 49951812 G A KCNH3 3'UTR 0.33 TCGA-DU-6392-01 12 49982250 49982250 G T FAM186B Missense_Mutation p.L841M 0.33 deleterious(0.02) probably_damaging(0.973) TCGA-DU-6392-01 12 49992709 49992709 T C FAM186B Silent p.V731V 0.13 TCGA-DU-6392-01 12 49994230 49994230 C T FAM186B Missense_Mutation p.R398H 0.42 tolerated(1) benign(0) TCGA-DU-6392-01 12 50027216 50027216 C A PRPF40B Missense_Mutation p.L156M 0.09 deleterious(0.03) benign(0.354) TCGA-DU-6392-01 12 50027255 50027255 G T PRPF40B Missense_Mutation p.G169C 0.07 deleterious(0) possibly_damaging(0.866) TCGA-DU-6392-01 12 50036069 50036069 C T PRPF40B Missense_Mutation p.R646C 0.34 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 12 50050932 50050932 C T FMNL3 Missense_Mutation p.R216H 0.11 deleterious(0.05) probably_damaging(0.956) TCGA-DU-6392-01 12 50185597 50185597 C T NCKAP5L 3'UTR 0.40 TCGA-DU-6392-01 12 50189040 50189040 G A NCKAP5L Missense_Mutation p.T868I 0.14 tolerated(0.28) benign(0.001) TCGA-DU-6392-01 12 50190545 50190545 C T NCKAP5L Silent p.A366A 0.39 TCGA-DU-6392-01 12 50191178 50191178 C T NCKAP5L Splice_Site p.X156_splice 0.27 TCGA-DU-6392-01 12 5021550 5021550 G A KCNA1 Missense_Mutation p.G336R 0.40 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 12 50232614 50232614 C A BCDIN3D Missense_Mutation p.R140M 0.14 tolerated(0.1) benign(0.261) TCGA-DU-6392-01 12 50355889 50355889 G A AQP5 Missense_Mutation p.G30D 0.38 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 12 50400277 50400277 A G RACGAP1 Silent p.R76R 0.46 TCGA-DU-6392-01 12 50480112 50480112 G A SMARCD1 Missense_Mutation p.V116I 0.37 tolerated(0.28) benign(0.011) TCGA-DU-6392-01 12 50490635 50490635 C T SMARCD1 Silent p.I424I 0.44 TCGA-DU-6392-01 12 50524405 50524405 G A CERS5 Missense_Mutation p.P368S 0.47 tolerated(0.75) benign(0.001) TCGA-DU-6392-01 12 50589640 50589640 G A LIMA1 Missense_Mutation p.R335C 0.10 tolerated(0.12) benign(0.004) TCGA-DU-6392-01 12 50829360 50829361 - A LARP4 Frame_Shift_Ins p.L166Vfs*6 0.25 TCGA-DU-6392-01 12 50867246 50867246 A G LARP4 Missense_Mutation p.T532A 0.09 tolerated(0.42) benign(0.003) TCGA-DU-6392-01 12 51089654 51089654 C T DIP2B Missense_Mutation p.R613W 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 51097980 51097980 G T DIP2B Nonsense_Mutation p.G795* 0.13 TCGA-DU-6392-01 12 51126253 51126253 C T DIP2B Silent p.I1305I 0.42 TCGA-DU-6392-01 12 51281443 51281443 G T TMPRSS12 3'UTR 0.67 TCGA-DU-6392-01 12 51447581 51447581 G A LETMD1 Silent p.K150K 0.07 TCGA-DU-6392-01 12 51467694 51467694 C T CSRNP2 Missense_Mutation p.C108Y 0.43 tolerated(0.05) possibly_damaging(0.742) TCGA-DU-6392-01 12 5154806 5154806 C T KCNA5 Missense_Mutation p.S498L 0.49 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 51736376 51736376 G A CELA1 Silent p.S103S 0.43 TCGA-DU-6392-01 12 51736377 51736377 C T CELA1 Missense_Mutation p.S103N 0.39 tolerated(0.06) benign(0.093) TCGA-DU-6392-01 12 51736384 51736384 A G CELA1 Missense_Mutation p.W101R 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 51758007 51758007 C T GALNT6 Missense_Mutation p.R316K 0.36 tolerated(0.61) benign(0.006) TCGA-DU-6392-01 12 51759335 51759335 G A GALNT6 Silent p.Y231Y 0.46 TCGA-DU-6392-01 12 51773181 51773181 C T GALNT6 Missense_Mutation p.E129K 0.45 deleterious(0.01) possibly_damaging(0.891) TCGA-DU-6392-01 12 51853776 51853776 G T SLC4A8 Missense_Mutation p.E299D 0.10 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 12 51863479 51863479 G T SLC4A8 Missense_Mutation p.Q477H 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 52100384 52100384 A G SCN8A Missense_Mutation p.E507G 0.36 tolerated(0.15) benign(0.003) TCGA-DU-6392-01 12 52159663 52159663 A T SCN8A Missense_Mutation p.H918L 0.12 deleterious(0) probably_damaging(0.925) TCGA-DU-6392-01 12 52180523 52180523 G T SCN8A Missense_Mutation p.M1380I 0.10 tolerated(1) benign(0.001) TCGA-DU-6392-01 12 52183122 52183122 T C SCN8A Missense_Mutation p.F1447L 0.44 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 12 52283195 52283195 T C ANKRD33 Missense_Mutation p.V189A 0.13 tolerated(0.33) benign(0) TCGA-DU-6392-01 12 52307480 52307480 C T ACVRL1 Missense_Mutation p.R151C 0.43 tolerated(0.09) possibly_damaging(0.513) TCGA-DU-6392-01 12 52314611 52314611 G A ACVRL1 Silent p.A482A 0.38 TCGA-DU-6392-01 12 52369229 52369229 G A ACVR1B Missense_Mutation p.R91H 0.32 tolerated(0.25) possibly_damaging(0.707) TCGA-DU-6392-01 12 52387951 52387951 G A ACVR1B 3'UTR 0.39 TCGA-DU-6392-01 12 52407473 52407473 G A GRASP Missense_Mutation p.D153N 0.50 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 52470943 52470943 G A C12orf44 Missense_Mutation p.R209H 0.42 deleterious(0.01) benign(0.066) TCGA-DU-6392-01 12 52566080 52566080 C T KRT80 Silent p.A360A 0.28 TCGA-DU-6392-01 12 52635320 52635320 G A KRT7 Missense_Mutation p.R253H 0.31 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 12 52681784 52681784 G T KRT81 Missense_Mutation p.S295Y 0.28 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 12 52682229 52682229 G A KRT81 Silent p.C217C 0.35 TCGA-DU-6392-01 12 52699090 52699090 G A KRT86 Missense_Mutation p.D268N 0.40 tolerated(0.36) benign(0.006) TCGA-DU-6392-01 12 52758805 52758805 G A KRT85 Silent p.S190S 0.42 TCGA-DU-6392-01 12 52775247 52775247 G A KRT84 Silent p.S325S 0.39 TCGA-DU-6392-01 12 52779070 52779070 G A KRT84 Silent p.D100D 0.09 TCGA-DU-6392-01 12 52779359 52779359 C T KRT84 Missense_Mutation p.R4H 0.31 tolerated(0.05) benign(0.003) TCGA-DU-6392-01 12 52789941 52789941 G A KRT82 Silent p.L382L 0.42 TCGA-DU-6392-01 12 52818536 52818536 A G KRT75 Missense_Mutation p.V474A 0.38 deleterious(0.01) possibly_damaging(0.533) TCGA-DU-6392-01 12 52824343 52824343 C T KRT75 Silent p.E339E 0.32 TCGA-DU-6392-01 12 52844333 52844333 C A KRT6B Missense_Mutation p.K204N 0.09 tolerated(0.41) benign(0.261) TCGA-DU-6392-01 12 52867487 52867487 C T KRT6C Missense_Mutation p.S12N 0.32 tolerated(0.2) unknown(0) TCGA-DU-6392-01 12 52912800 52912800 C T KRT5 Missense_Mutation p.V234M 0.41 tolerated(0.2) benign(0.067) TCGA-DU-6392-01 12 52913879 52913879 G T KRT5 Missense_Mutation p.L68M 0.31 deleterious(0.01) benign(0.01) TCGA-DU-6392-01 12 52914038 52914038 G A KRT5 Missense_Mutation p.R15C 0.44 deleterious(0) unknown(0) TCGA-DU-6392-01 12 52943138 52943138 C A KRT71 Splice_Site p.X219_splice 0.12 TCGA-DU-6392-01 12 53005048 53005048 G A KRT73 Silent p.I350I 0.35 TCGA-DU-6392-01 12 53040720 53040720 C T KRT2 Missense_Mutation p.A425T 0.42 tolerated(0.08) possibly_damaging(0.63) TCGA-DU-6392-01 12 53074048 53074048 G A KRT1 Missense_Mutation p.R29C 0.11 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 12 53086375 53086375 C A KRT77 Missense_Mutation p.Q419H 0.30 tolerated(0.41) possibly_damaging(0.677) TCGA-DU-6392-01 12 53292268 53292268 G A KRT8 Missense_Mutation p.T441M 0.18 tolerated(0.17) benign(0.08) TCGA-DU-6392-01 12 53293758 53293758 G T KRT8 Missense_Mutation p.A289D 0.33 deleterious(0) probably_damaging(0.927) TCGA-DU-6392-01 12 53344642 53344642 C T KRT18 Silent p.I203I 0.50 TCGA-DU-6392-01 12 53448969 53448969 G A TENC1 Splice_Site p.X185_splice 0.34 TCGA-DU-6392-01 12 53457553 53457553 C T TENC1 Missense_Mutation p.P1383S 0.43 tolerated(0.67) benign(0.009) TCGA-DU-6392-01 12 53460161 53460161 C A SPRYD3 Missense_Mutation p.E377D 0.13 tolerated(0.53) benign(0.002) TCGA-DU-6392-01 12 53516913 53516913 G A SOAT2 Missense_Mutation p.V429I 0.36 tolerated(0.25) benign(0.058) TCGA-DU-6392-01 12 53567532 53567532 G A CSAD Missense_Mutation p.P19S 0.28 tolerated_low_confidence(0.3) benign(0.032) TCGA-DU-6392-01 12 53585794 53585794 T G ITGB7 Missense_Mutation p.D722A 0.39 tolerated(0.09) benign(0.309) TCGA-DU-6392-01 12 53587619 53587619 C T ITGB7 Missense_Mutation p.A459T 0.42 tolerated(0.1) possibly_damaging(0.699) TCGA-DU-6392-01 12 53589427 53589427 C T ITGB7 Missense_Mutation p.A352T 0.43 tolerated(0.76) benign(0.001) TCGA-DU-6392-01 12 53682456 53682456 C T ESPL1 Missense_Mutation p.R1561W 0.30 deleterious(0.01) possibly_damaging(0.453) TCGA-DU-6392-01 12 53684233 53684233 G A ESPL1 Missense_Mutation p.A1782T 0.17 deleterious(0.03) benign(0.206) TCGA-DU-6392-01 12 53685848 53685848 A G ESPL1 Silent p.L1924L 0.15 TCGA-DU-6392-01 12 53686377 53686377 G T ESPL1 Missense_Mutation p.V1978L 0.20 tolerated(0.07) possibly_damaging(0.766) TCGA-DU-6392-01 12 53819521 53819521 G T AMHR2 Nonsense_Mutation p.G224* 0.37 TCGA-DU-6392-01 12 53865452 53865452 G A PCBP2 Missense_Mutation p.A309T 0.69 tolerated(1) benign(0.034) TCGA-DU-6392-01 12 53865487 53865487 G A PCBP2 Silent p.A320A 0.49 TCGA-DU-6392-01 12 53878923 53878923 G T MAP3K12 Silent p.I352I 0.16 TCGA-DU-6392-01 12 53879183 53879183 T C MAP3K12 Missense_Mutation p.K300E 0.41 deleterious(0.01) benign(0.439) TCGA-DU-6392-01 12 53899497 53899497 G A TARBP2 Missense_Mutation p.R269Q 0.33 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 12 54062936 54062936 C T ATP5G2 Missense_Mutation p.A160T 0.19 deleterious(0.02) benign(0.445) TCGA-DU-6392-01 12 54115881 54115881 G A CALCOCO1 Silent p.S179S 0.10 TCGA-DU-6392-01 12 54118439 54118439 G A CALCOCO1 Silent p.V83V 0.20 TCGA-DU-6392-01 12 54338866 54338866 G T HOXC13 Missense_Mutation p.K273N 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 12 54396215 54396215 C T HOXC9 Silent p.S180S 0.30 TCGA-DU-6392-01 12 54403067 54403067 G A HOXC8 5'UTR 0.37 TCGA-DU-6392-01 12 54427291 54427291 G A HOXC5 Missense_Mutation p.A129T 0.45 tolerated(0.27) benign(0.011) TCGA-DU-6392-01 12 54576430 54576431 - A SMUG1 Intron 0.31 TCGA-DU-6392-01 12 54756608 54756608 G A GPR84 Missense_Mutation p.A343V 0.08 tolerated(0.08) benign(0.014) TCGA-DU-6392-01 12 54756722 54756722 C A GPR84 Missense_Mutation p.R305I 0.36 tolerated(0.14) benign(0.016) TCGA-DU-6392-01 12 54765377 54765377 C T ZNF385A Missense_Mutation p.A182T 0.45 tolerated(0.36) benign(0.018) TCGA-DU-6392-01 12 54795851 54795851 G T ITGA5 Nonsense_Mutation p.Y720* 0.09 TCGA-DU-6392-01 12 54852884 54852884 G A GTSF1 3'UTR 0.28 TCGA-DU-6392-01 12 54858868 54858868 G T GTSF1 Missense_Mutation p.L34I 0.43 deleterious(0.03) possibly_damaging(0.889) TCGA-DU-6392-01 12 54917615 54917615 C T NCKAP1L Silent p.D677D 0.09 TCGA-DU-6392-01 12 54966424 54966424 G A PDE1B Missense_Mutation p.E212K 0.40 deleterious(0) probably_damaging(0.968) TCGA-DU-6392-01 12 55356262 55356262 G A TESPA1 Missense_Mutation p.R474C 0.38 tolerated_low_confidence(0.11) benign(0.004) TCGA-DU-6392-01 12 55356410 55356410 A G TESPA1 Silent p.H424H 0.12 TCGA-DU-6392-01 12 55420664 55420664 G T NEUROD4 Missense_Mutation p.Q147H 0.33 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 12 55641583 55641583 C T OR6C74 Missense_Mutation p.T171I 0.30 tolerated_low_confidence(1) benign(0.109) TCGA-DU-6392-01 12 55715121 55715121 C A OR6C1 Silent p.V246V 0.40 TCGA-DU-6392-01 12 55725688 55725688 C A OR6C3 Silent p.I68I 0.32 TCGA-DU-6392-01 12 55795115 55795115 T C OR6C65 Missense_Mutation p.L268S 0.40 deleterious_low_confidence(0.03) probably_damaging(0.968) TCGA-DU-6392-01 12 56091753 56091753 C A ITGA7 Missense_Mutation p.S421I 0.37 deleterious(0) possibly_damaging(0.897) TCGA-DU-6392-01 12 56092276 56092276 C A ITGA7 Missense_Mutation p.Q365H 0.40 tolerated(0.08) possibly_damaging(0.569) TCGA-DU-6392-01 12 56121015 56121015 C T CD63 Missense_Mutation p.A59T 0.31 tolerated(0.05) benign(0.104) TCGA-DU-6392-01 12 56142563 56142563 C T GDF11 Silent p.G213G 0.54 TCGA-DU-6392-01 12 56222254 56222254 C A DNAJC14 Missense_Mutation p.Q63H 0.09 deleterious_low_confidence(0.01) benign(0.241) TCGA-DU-6392-01 12 56231369 56231369 C T MMP19 Nonsense_Mutation p.W386* 0.26 TCGA-DU-6392-01 12 56236156 56236156 C T MMP19 Missense_Mutation p.D52N 0.38 deleterious(0.01) possibly_damaging(0.872) TCGA-DU-6392-01 12 56335065 56335065 T C DGKA Silent p.L377L 0.34 TCGA-DU-6392-01 12 56351340 56351340 G T PMEL Silent p.G249G 0.37 TCGA-DU-6392-01 12 56351341 56351341 C T PMEL Missense_Mutation p.G249D 0.07 tolerated(0.17) probably_damaging(0.995) TCGA-DU-6392-01 12 56351722 56351722 C A PMEL Missense_Mutation p.A206S 0.34 tolerated(0.97) benign(0.034) TCGA-DU-6392-01 12 56398397 56398397 C A SUOX Missense_Mutation p.D408E 0.11 deleterious(0) benign(0.11) TCGA-DU-6392-01 12 56428881 56428881 C T IKZF4 Silent p.G508G 0.47 TCGA-DU-6392-01 12 56435867 56435867 C A RPS26 5'UTR 0.24 TCGA-DU-6392-01 12 56493456 56493456 G A ERBB3 Missense_Mutation p.R955H 0.27 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 56504771 56504771 C A PA2G4 Missense_Mutation p.A289D 0.22 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 12 56515435 56515435 G A ZC3H10 Silent p.T363T 0.33 TCGA-DU-6392-01 12 56530574 56530574 C A ESYT1 Missense_Mutation p.P570H 0.12 deleterious(0.03) possibly_damaging(0.742) TCGA-DU-6392-01 12 56532196 56532196 G T ESYT1 Missense_Mutation p.Q792H 0.33 tolerated(0.08) benign(0.031) TCGA-DU-6392-01 12 56536630 56536630 C T ESYT1 Missense_Mutation p.A977V 0.30 tolerated(0.29) benign(0.008) TCGA-DU-6392-01 12 56536911 56536911 T C ESYT1 Missense_Mutation p.L1043P 0.41 deleterious(0.01) benign(0.019) TCGA-DU-6392-01 12 56554120 56554120 C T MYL6 Intron 0.36 TCGA-DU-6392-01 12 56555180 56555180 G A MYL6 3'UTR 0.35 TCGA-DU-6392-01 12 56629383 56629383 G T SLC39A5 Nonsense_Mutation p.E282* 0.08 TCGA-DU-6392-01 12 56631045 56631045 G T SLC39A5 Missense_Mutation p.S467I 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 12 56708994 56708994 C T CNPY2 Missense_Mutation p.G3D 0.09 tolerated(0.39) unknown(0) TCGA-DU-6392-01 12 56715903 56715903 T C PAN2 Missense_Mutation p.Y920C 0.40 deleterious(0) possibly_damaging(0.838) TCGA-DU-6392-01 12 56716231 56716231 G A PAN2 Silent p.D895D 0.32 TCGA-DU-6392-01 12 56720656 56720656 A G PAN2 Missense_Mutation p.F336S 0.31 deleterious(0) possibly_damaging(0.504) TCGA-DU-6392-01 12 56721409 56721409 G T PAN2 Missense_Mutation p.L220M 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 56733533 56733533 A G IL23A Missense_Mutation p.D107G 0.23 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 56863244 56863244 G T SPRYD4 Missense_Mutation p.Q169H 0.28 tolerated(0.08) benign(0.325) TCGA-DU-6392-01 12 56867069 56867069 G A GLS2 Silent p.D464D 0.39 TCGA-DU-6392-01 12 56980711 56980711 G T RBMS2 Splice_Site p.X317_splice 0.33 TCGA-DU-6392-01 12 56994235 56994235 A C BAZ2A Missense_Mutation p.L1550V 0.38 deleterious(0) probably_damaging(0.929) TCGA-DU-6392-01 12 56995055 56995055 C T BAZ2A Silent p.Q1403Q 0.39 TCGA-DU-6392-01 12 56996556 56996556 C T BAZ2A Missense_Mutation p.R1124H 0.17 tolerated(0.06) benign(0.344) TCGA-DU-6392-01 12 57032044 57032044 C T ATP5B 3'UTR 0.32 TCGA-DU-6392-01 12 57039093 57039093 C T ATP5B Missense_Mutation p.A58T 0.29 tolerated_low_confidence(0.18) benign(0.001) TCGA-DU-6392-01 12 57111806 57111806 C T NACA Intron 0.34 TCGA-DU-6392-01 12 57115005 57115005 T C NACA Silent p.L103L 0.10 TCGA-DU-6392-01 12 57323240 57323240 G A SDR9C7 Nonsense_Mutation p.R220* 0.08 TCGA-DU-6392-01 12 57397427 57397427 C A ZBTB39 Missense_Mutation p.E425D 0.26 tolerated(0.98) benign(0.003) TCGA-DU-6392-01 12 57398141 57398141 C A ZBTB39 Missense_Mutation p.K187N 0.34 deleterious(0.03) benign(0.028) TCGA-DU-6392-01 12 57432321 57432321 G T MYO1A Silent p.S545S 0.22 TCGA-DU-6392-01 12 5744492 5744492 C T ANO2 Missense_Mutation p.V548I 0.26 deleterious(0) benign(0.165) TCGA-DU-6392-01 12 57457058 57457058 C T TMEM194A Missense_Mutation p.R275Q 0.39 deleterious(0.02) probably_damaging(0.968) TCGA-DU-6392-01 12 57550680 57550680 G A LRP1 Missense_Mutation p.G513D 0.28 probably_damaging(0.987) TCGA-DU-6392-01 12 57556241 57556241 C A LRP1 Missense_Mutation p.L782M 0.36 probably_damaging(0.999) TCGA-DU-6392-01 12 57573202 57573202 C T LRP1 Missense_Mutation p.T1610M 0.45 probably_damaging(0.999) TCGA-DU-6392-01 12 57577599 57577599 A G LRP1 Missense_Mutation p.I1946V 0.23 probably_damaging(0.977) TCGA-DU-6392-01 12 57589899 57589899 C A LRP1 Missense_Mutation p.L2911M 0.13 benign(0.033) TCGA-DU-6392-01 12 57595294 57595294 G A LRP1 Missense_Mutation p.A3454T 0.51 probably_damaging(0.989) TCGA-DU-6392-01 12 57599399 57599399 C T LRP1 Silent p.G3843G 0.33 TCGA-DU-6392-01 12 57599408 57599408 C A LRP1 Silent p.L3846L 0.31 TCGA-DU-6392-01 12 57600483 57600483 C T LRP1 Missense_Mutation p.R3940C 0.37 possibly_damaging(0.796) TCGA-DU-6392-01 12 57602907 57602907 G T LRP1 Missense_Mutation p.D4063Y 0.14 probably_damaging(1) TCGA-DU-6392-01 12 57605281 57605281 G A LRP1 Missense_Mutation p.G4368D 0.10 benign(0.013) TCGA-DU-6392-01 12 57619494 57619494 C T NXPH4 Silent p.D297D 0.42 TCGA-DU-6392-01 12 57627032 57627032 C T SHMT2 Silent p.Y309Y 0.26 TCGA-DU-6392-01 12 57849418 57849418 A G INHBE Silent p.K33K 0.12 TCGA-DU-6392-01 12 57849882 57849882 A G INHBE Missense_Mutation p.T102A 0.37 tolerated(0.2) benign(0.015) TCGA-DU-6392-01 12 57861780 57861780 C T GLI1 Missense_Mutation p.P361S 0.29 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 12 57867416 57867416 G T ARHGAP9 Missense_Mutation p.T665N 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 57867954 57867954 G A ARHGAP9 Missense_Mutation p.R597W 0.31 deleterious(0) probably_damaging(0.927) TCGA-DU-6392-01 12 57872425 57872425 G A ARHGAP9 Silent p.S144S 0.07 TCGA-DU-6392-01 12 57891945 57891945 C A MARS Missense_Mutation p.P259H 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 57891963 57891963 A C MARS Missense_Mutation p.N265T 0.11 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 12 57905572 57905572 G A MARS Missense_Mutation p.R487Q 0.41 deleterious(0.01) possibly_damaging(0.734) TCGA-DU-6392-01 12 57919917 57919917 C A MBD6 Missense_Mutation p.P389H 0.35 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 12 57927068 57927068 G A DCTN2 Missense_Mutation p.R235C 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 57969503 57969503 C T KIF5A Silent p.D662D 0.34 TCGA-DU-6392-01 12 58009709 58009709 C T ARHGEF25 Silent p.R482R 0.49 TCGA-DU-6392-01 12 58016682 58016682 G A SLC26A10 Missense_Mutation p.A302T 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 58016897 58016897 G A SLC26A10 Missense_Mutation p.V344M 0.41 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 12 58126751 58126751 C T AGAP2 Missense_Mutation p.A521T 0.34 deleterious(0.02) benign(0.271) TCGA-DU-6392-01 12 58128172 58128172 T G AGAP2 Missense_Mutation p.K444T 0.09 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 12 58145099 58145099 C T CDK4 Missense_Mutation p.R82Q 0.42 tolerated(0.17) benign(0.025) TCGA-DU-6392-01 12 58160812 58160812 G T CYP27B1 Missense_Mutation p.L5I 0.10 deleterious_low_confidence(0.02) benign(0.181) TCGA-DU-6392-01 12 58174193 58174193 G A METTL21B Missense_Mutation p.G149R 0.47 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 12 58201119 58201119 A G AVIL Missense_Mutation p.F496L 0.11 deleterious(0.04) benign(0.201) TCGA-DU-6392-01 12 58201166 58201166 G A AVIL Missense_Mutation p.T480M 0.36 deleterious(0.02) benign(0.017) TCGA-DU-6392-01 12 59276728 59276728 A G LRIG3 Missense_Mutation p.V468A 0.08 tolerated(0.12) benign(0.297) TCGA-DU-6392-01 12 59307811 59307811 G A LRIG3 Missense_Mutation p.T112I 0.46 tolerated(0.21) benign(0.001) TCGA-DU-6392-01 12 6091141 6091141 C A VWF Missense_Mutation p.E2366D 0.34 tolerated(0.1) possibly_damaging(0.636) TCGA-DU-6392-01 12 6173434 6173434 G A VWF Silent p.D470D 0.57 TCGA-DU-6392-01 12 6180463 6180463 C A VWF Missense_Mutation p.G386W 0.11 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 12 62147416 62147416 A C FAM19A2 Missense_Mutation p.V124G 0.34 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 12 62688032 62688032 G T USP15 Missense_Mutation p.Q54H 0.10 tolerated(0.09) benign(0.016) TCGA-DU-6392-01 12 62749132 62749132 G A USP15 Missense_Mutation p.C264Y 0.23 tolerated(1) benign(0) TCGA-DU-6392-01 12 62783719 62783719 C T USP15 Nonsense_Mutation p.R599* 0.47 TCGA-DU-6392-01 12 62786882 62786882 T G USP15 Missense_Mutation p.L824V 0.14 deleterious(0.02) probably_damaging(0.965) TCGA-DU-6392-01 12 62949858 62949858 C T MON2 Missense_Mutation p.L1099F 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 63113990 63113990 C T PPM1H Missense_Mutation p.G345E 0.08 deleterious(0) probably_damaging(0.972) TCGA-DU-6392-01 12 64174847 64174847 A - TMEM5 Frame_Shift_Del p.N75Mfs*14 0.09 TCGA-DU-6392-01 12 64202637 64202637 C T TMEM5 Missense_Mutation p.S366F 0.38 deleterious(0.03) probably_damaging(0.938) TCGA-DU-6392-01 12 64661006 64661006 G T C12orf56 Missense_Mutation p.P449H 0.41 deleterious(0.01) benign(0.025) TCGA-DU-6392-01 12 64671501 64671501 C T C12orf56 Missense_Mutation p.V305M 0.57 tolerated(0.14) benign(0.067) TCGA-DU-6392-01 12 64825547 64825547 G A XPOT Missense_Mutation p.A736T 0.47 tolerated(0.41) benign(0.064) TCGA-DU-6392-01 12 64853996 64853996 G T TBK1 Missense_Mutation p.V39L 0.13 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 12 65085294 65085294 C T RASSF3 Missense_Mutation p.R168C 0.33 deleterious(0.03) possibly_damaging(0.597) TCGA-DU-6392-01 12 65564502 65564502 G T LEMD3 Missense_Mutation p.D376Y 0.29 tolerated(0.07) probably_damaging(0.987) TCGA-DU-6392-01 12 6560660 6560660 C T CD27 3'UTR 0.50 TCGA-DU-6392-01 12 65639941 65639941 G T LEMD3 Splice_Site p.X858_splice 0.13 TCGA-DU-6392-01 12 6601555 6601555 C T MRPL51 Missense_Mutation p.R90H 0.43 deleterious(0.03) benign(0.391) TCGA-DU-6392-01 12 66152554 66152554 A G RPSAP52 RNA 0.27 TCGA-DU-6392-01 12 6619249 6619249 G A NCAPD2 Missense_Mutation p.R71Q 0.17 tolerated(0.22) benign(0.097) TCGA-DU-6392-01 12 6638999 6638999 C T NCAPD2 Nonsense_Mutation p.R1238* 0.46 TCGA-DU-6392-01 12 6639008 6639008 C T NCAPD2 Missense_Mutation p.R1241C 0.37 deleterious(0) possibly_damaging(0.762) TCGA-DU-6392-01 12 6647413 6647413 C A GAPDH 3'UTR 0.20 TCGA-DU-6392-01 12 66522867 66522867 C T LLPH Missense_Mutation p.S7N 0.50 deleterious(0) probably_damaging(0.971) TCGA-DU-6392-01 12 6658995 6658995 C T IFFO1 Missense_Mutation p.R333H 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 665976 665976 G A B4GALNT3 Missense_Mutation p.C775Y 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 66641635 66641635 C T IRAK3 Missense_Mutation p.S492F 0.07 tolerated(0.65) benign(0.008) TCGA-DU-6392-01 12 66641677 66641677 C A IRAK3 Missense_Mutation p.P506H 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 66641935 66641935 A G IRAK3 Missense_Mutation p.Q592R 0.12 deleterious_low_confidence(0.05) benign(0.159) TCGA-DU-6392-01 12 66703903 66703903 G A HELB Missense_Mutation p.D399N 0.41 tolerated(0.16) benign(0.001) TCGA-DU-6392-01 12 667216 667216 C T B4GALNT3 Missense_Mutation p.R857C 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 66725397 66725397 A G HELB Missense_Mutation p.D1045G 0.09 tolerated(0.19) benign(0.004) TCGA-DU-6392-01 12 668483 668483 C T B4GALNT3 Silent p.F928F 0.34 TCGA-DU-6392-01 12 66859167 66859167 C T GRIP1 Missense_Mutation p.E254K 0.35 tolerated(0.06) possibly_damaging(0.722) TCGA-DU-6392-01 12 6702687 6702687 G A CHD4 Silent p.V803V 0.40 TCGA-DU-6392-01 12 6711198 6711198 A G CHD4 Silent p.P122P 0.13 TCGA-DU-6392-01 12 67675766 67675766 G T CAND1 Missense_Mutation p.V49L 0.11 tolerated(0.06) possibly_damaging(0.666) TCGA-DU-6392-01 12 67686508 67686508 A G CAND1 Missense_Mutation p.S107G 0.39 tolerated(0.29) probably_damaging(0.996) TCGA-DU-6392-01 12 67696122 67696122 T C CAND1 Silent p.S340S 0.37 TCGA-DU-6392-01 12 67703936 67703936 A - CAND1 Frame_Shift_Del p.M1068Wfs*26 0.07 TCGA-DU-6392-01 12 6833966 6833966 C T COPS7A Silent p.D48D 0.36 TCGA-DU-6392-01 12 6838441 6838441 C A COPS7A Missense_Mutation p.A119D 0.09 tolerated(0.26) benign(0.002) TCGA-DU-6392-01 12 68619372 68619372 C T IL26 Silent p.T55T 0.36 TCGA-DU-6392-01 12 68619407 68619407 C T IL26 Missense_Mutation p.A44T 0.37 tolerated(0.97) benign(0.001) TCGA-DU-6392-01 12 69083346 69083346 C A NUP107 Missense_Mutation p.T45N 0.08 tolerated_low_confidence(0.08) benign(0.082) TCGA-DU-6392-01 12 6909495 6909495 G T CD4 Missense_Mutation p.Q24H 0.40 deleterious(0.05) benign(0.213) TCGA-DU-6392-01 12 69210696 69210696 C T MDM2 Silent p.G93G 0.43 TCGA-DU-6392-01 12 6933544 6933544 C T GPR162 Silent p.G160G 0.30 TCGA-DU-6392-01 12 6934736 6934736 C T GPR162 Silent p.L319L 0.38 TCGA-DU-6392-01 12 6946155 6946155 G T LEPREL2 Missense_Mutation p.A488S 0.45 deleterious(0.02) benign(0.059) TCGA-DU-6392-01 12 6958590 6958590 G T CDCA3 Missense_Mutation p.S183Y 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-DU-6392-01 12 69650591 69650591 C T CPSF6 Silent p.F163F 0.28 TCGA-DU-6392-01 12 6978315 6978315 G A TPI1 Missense_Mutation p.E135K 0.45 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 12 69964235 69964235 G A FRS2 Missense_Mutation p.R64H 0.36 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 12 69991024 69991024 C T CCT2 Silent p.D357D 0.36 TCGA-DU-6392-01 12 70149248 70149248 G A RAB3IP Silent p.P36P 0.33 TCGA-DU-6392-01 12 7015617 7015617 G A LRRC23 Missense_Mutation p.R94H 0.45 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 7027207 7027207 G A ENO2 Missense_Mutation p.R183Q 0.37 tolerated_low_confidence(0.21) benign(0.221) TCGA-DU-6392-01 12 7045646 7045646 C T ATN1 Missense_Mutation p.P406S 0.48 probably_damaging(0.992) TCGA-DU-6392-01 12 70726546 70726546 G T CNOT2 Splice_Site p.X190_splice 0.34 TCGA-DU-6392-01 12 70760564 70760564 G A KCNMB4 Missense_Mutation p.S17N 0.32 deleterious(0.03) possibly_damaging(0.537) TCGA-DU-6392-01 12 7076744 7076744 G A PHB2 Intron 0.37 TCGA-DU-6392-01 12 7076770 7076770 C T PHB2 Intron 0.29 TCGA-DU-6392-01 12 7077078 7077078 G T PHB2 Missense_Mutation p.A195D 0.07 deleterious(0.05) possibly_damaging(0.772) TCGA-DU-6392-01 12 7079774 7079774 G A PHB2 5'UTR 0.33 TCGA-DU-6392-01 12 70824314 70824314 C T KCNMB4 Missense_Mutation p.H172Y 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 12 70931846 70931846 G A PTPRB Intron 0.56 TCGA-DU-6392-01 12 70938360 70938361 - A PTPRB Frame_Shift_Ins p.S1824Ffs*7 0.40 TCGA-DU-6392-01 12 70981023 70981023 C T PTPRB Missense_Mutation p.R692H 0.15 tolerated(0.51) benign(0.024) TCGA-DU-6392-01 12 70989893 70989893 A G PTPRB Silent p.N398N 0.20 TCGA-DU-6392-01 12 7177275 7177275 G T C1S Missense_Mutation p.A463S 0.27 tolerated(0.23) possibly_damaging(0.589) TCGA-DU-6392-01 12 7177630 7177630 G A C1S Missense_Mutation p.R581H 0.44 tolerated(0.55) benign(0.009) TCGA-DU-6392-01 12 7188195 7188195 G T C1R Missense_Mutation p.L535M 0.33 tolerated(0.1) benign(0.159) TCGA-DU-6392-01 12 7188444 7188444 G T C1R Missense_Mutation p.L452M 0.19 deleterious(0.01) probably_damaging(0.921) TCGA-DU-6392-01 12 71918256 71918256 C T LGR5 Missense_Mutation p.L119F 0.30 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 71977622 71977622 C A LGR5 Missense_Mutation p.A611D 0.38 deleterious(0) possibly_damaging(0.456) TCGA-DU-6392-01 12 71978482 71978482 C A LGR5 Missense_Mutation p.L898I 0.29 tolerated(0.09) benign(0.018) TCGA-DU-6392-01 12 72027072 72027072 C T ZFC3H1 Missense_Mutation p.R886K 0.35 tolerated(0.92) benign(0.007) TCGA-DU-6392-01 12 72057179 72057179 C A ZFC3H1 Missense_Mutation p.G71V 0.38 deleterious_low_confidence(0.05) probably_damaging(0.953) TCGA-DU-6392-01 12 72092916 72092916 C A TMEM19 Intron 0.39 TCGA-DU-6392-01 12 72179326 72179326 C T RAB21 Missense_Mutation p.A184V 0.36 tolerated(0.05) benign(0.015) TCGA-DU-6392-01 12 72265893 72265893 G T TBC1D15 Missense_Mutation p.G25V 0.08 tolerated(0.19) possibly_damaging(0.739) TCGA-DU-6392-01 12 72274292 72274292 G A TBC1D15 Missense_Mutation p.R83K 0.48 tolerated(1) benign(0.019) TCGA-DU-6392-01 12 72355407 72355407 G T TPH2 Intron 0.30 TCGA-DU-6392-01 12 72355442 72355442 G A TPH2 Intron 0.45 TCGA-DU-6392-01 12 7241913 7241913 T C C1R Silent p.V247V 0.26 TCGA-DU-6392-01 12 72425324 72425324 G A TPH2 Missense_Mutation p.R441H 0.45 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 12 7249462 7249462 T C C1RL Missense_Mutation p.Q330R 0.45 tolerated(0.13) benign(0.06) TCGA-DU-6392-01 12 7249563 7249563 G A C1RL Silent p.N296N 0.47 TCGA-DU-6392-01 12 72863578 72863578 G T TRHDE Missense_Mutation p.E407D 0.32 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 72863628 72863628 G T TRHDE Missense_Mutation p.S424I 0.09 tolerated(0.18) possibly_damaging(0.797) TCGA-DU-6392-01 12 73012803 73012803 C A TRHDE Missense_Mutation p.N773K 0.37 tolerated(0.53) benign(0.008) TCGA-DU-6392-01 12 7362699 7362699 G A PEX5 Silent p.S615S 0.35 TCGA-DU-6392-01 12 7519886 7519886 G T CD163L1 Missense_Mutation p.H1409N 0.40 deleterious(0.04) benign(0.01) TCGA-DU-6392-01 12 7522096 7522096 G A CD163L1 Missense_Mutation p.A1299V 0.42 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 12 7527243 7527243 G A CD163L1 Silent p.S1068S 0.37 TCGA-DU-6392-01 12 7531861 7531861 C T CD163L1 Missense_Mutation p.G695E 0.38 deleterious(0.05) probably_damaging(1) TCGA-DU-6392-01 12 75441976 75441976 C T KCNC2 Silent p.T579T 0.34 TCGA-DU-6392-01 12 75445001 75445001 C T KCNC2 Missense_Mutation p.E262K 0.28 tolerated(0.07) benign(0.284) TCGA-DU-6392-01 12 7556246 7556246 A G CD163L1 Silent p.I431I 0.07 TCGA-DU-6392-01 12 75875739 75875739 C T GLIPR1 Silent p.I100I 0.31 TCGA-DU-6392-01 12 75892793 75892793 C A KRR1 3'UTR 0.24 TCGA-DU-6392-01 12 75897758 75897758 T C KRR1 Missense_Mutation p.K253E 0.05 tolerated(0.06) possibly_damaging(0.839) TCGA-DU-6392-01 12 7640302 7640302 C A CD163 Intron 0.36 TCGA-DU-6392-01 12 7653811 7653811 A C CD163 Silent p.L127L 0.14 TCGA-DU-6392-01 12 76740150 76740150 G A BBS10 Missense_Mutation p.P539S 0.30 tolerated(0.76) benign(0.004) TCGA-DU-6392-01 12 77220687 77220687 G T ZDHHC17 Splice_Site p.X300_splice 0.29 TCGA-DU-6392-01 12 77438524 77438524 A G E2F7 Missense_Mutation p.F294S 0.46 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 7805417 7805417 G T APOBEC1 Missense_Mutation p.P20H 0.10 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 12 78225151 78225151 G A NAV3 5'UTR 0.39 TCGA-DU-6392-01 12 78513292 78513292 T C NAV3 Missense_Mutation p.S1106P 0.12 tolerated(0.36) possibly_damaging(0.522) TCGA-DU-6392-01 12 78513689 78513689 C A NAV3 Missense_Mutation p.S1238Y 0.23 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 12 78516178 78516178 C T NAV3 Missense_Mutation p.T1403M 0.14 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 12 78591117 78591117 C A NAV3 Missense_Mutation p.L2106I 0.33 tolerated(0.17) probably_damaging(0.999) TCGA-DU-6392-01 12 7985401 7985401 C T SLC2A14 Missense_Mutation p.A33T 0.45 tolerated(0.76) benign(0.003) TCGA-DU-6392-01 12 80199984 80199984 C A PPP1R12A Missense_Mutation p.K595N 0.09 tolerated(0.28) benign(0.293) TCGA-DU-6392-01 12 80623083 80623083 G A OTOGL Missense_Mutation p.R170Q 0.42 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 12 80647251 80647251 G A OTOGL Missense_Mutation p.V422I 0.31 tolerated(1) benign(0.002) TCGA-DU-6392-01 12 80647271 80647271 C T OTOGL Silent p.C428C 0.29 TCGA-DU-6392-01 12 80672872 80672872 G A OTOGL Missense_Mutation p.G943R 0.46 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 80707353 80707353 A G OTOGL Missense_Mutation p.Y1174C 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 8088619 8088619 C A SLC2A3 Missense_Mutation p.Q4H 0.13 deleterious(0.04) benign(0.001) TCGA-DU-6392-01 12 81101660 81101660 C T MYF6 Silent p.S54S 0.38 TCGA-DU-6392-01 12 81110945 81110945 C T MYF5 Nonsense_Mutation p.R35* 0.14 TCGA-DU-6392-01 12 81111033 81111033 C T MYF5 Missense_Mutation p.A64V 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 12 81676815 81676815 C A PPFIA2 Nonsense_Mutation p.E998* 0.35 TCGA-DU-6392-01 12 8212381 8212381 C T C3AR1 Missense_Mutation p.R134H 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 8212652 8212652 C T C3AR1 Missense_Mutation p.V44M 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 8278156 8278156 G A CLEC4A Splice_Site p.X28_splice 0.12 TCGA-DU-6392-01 12 83251240 83251240 G A TMTC2 Missense_Mutation p.A179T 0.50 tolerated(0.23) benign(0.2) TCGA-DU-6392-01 12 83290332 83290332 G A TMTC2 Missense_Mutation p.V464I 0.48 tolerated(0.23) benign(0.006) TCGA-DU-6392-01 12 83290354 83290354 C T TMTC2 Missense_Mutation p.A471V 0.46 tolerated(1) benign(0) TCGA-DU-6392-01 12 85257248 85257248 A T SLC6A15 Silent p.P596P 0.08 TCGA-DU-6392-01 12 85413440 85413440 T A TSPAN19 Missense_Mutation p.T139S 0.30 tolerated(0.56) benign(0.007) TCGA-DU-6392-01 12 85449803 85449803 G T LRRIQ1 Missense_Mutation p.S411I 0.34 tolerated(0.23) benign(0.001) TCGA-DU-6392-01 12 85450485 85450485 A G LRRIQ1 Silent p.K638K 0.41 TCGA-DU-6392-01 12 85450908 85450908 C A LRRIQ1 Silent p.P779P 0.36 TCGA-DU-6392-01 12 85546114 85546114 A G LRRIQ1 Silent p.T1462T 0.33 TCGA-DU-6392-01 12 85638665 85638665 C T LRRIQ1 Silent p.H1705H 0.44 TCGA-DU-6392-01 12 86198665 86198665 A G RASSF9 Missense_Mutation p.C375R 0.25 tolerated(0.27) benign(0.006) TCGA-DU-6392-01 12 86377346 86377346 T G MGAT4C Missense_Mutation p.N84H 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 12 8689848 8689848 A G CLEC4E Missense_Mutation p.C79R 0.28 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 12 8757829 8757829 C T AICDA Missense_Mutation p.A137T 0.30 tolerated(0.42) benign(0.009) TCGA-DU-6392-01 12 8803149 8803149 T C MFAP5 Missense_Mutation p.Y95C 0.35 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 12 88379716 88379716 G A C12orf50 Missense_Mutation p.A346V 0.07 tolerated(0.3) benign(0.115) TCGA-DU-6392-01 12 88379745 88379745 G A C12orf50 Silent p.H336H 0.07 TCGA-DU-6392-01 12 88500547 88500547 G A CEP290 Nonsense_Mutation p.R908* 0.33 TCGA-DU-6392-01 12 88505575 88505575 C A CEP290 Missense_Mutation p.V705F 0.25 possibly_damaging(0.706) TCGA-DU-6392-01 12 88514803 88514803 C T CEP290 Missense_Mutation p.A444T 0.11 benign(0.001) TCGA-DU-6392-01 12 88514815 88514815 C A CEP290 Nonsense_Mutation p.E440* 0.32 TCGA-DU-6392-01 12 8866595 8866595 G A RIMKLB Missense_Mutation p.V45M 0.51 tolerated(0.17) benign(0.008) TCGA-DU-6392-01 12 88910194 88910194 C A KITLG Missense_Mutation p.R146I 0.36 tolerated(0.09) possibly_damaging(0.605) TCGA-DU-6392-01 12 8902618 8902618 C T RIMKLB Silent p.C112C 0.35 TCGA-DU-6392-01 12 89818984 89818984 G T POC1B Missense_Mutation p.T429N 0.39 tolerated(0.26) benign(0.002) TCGA-DU-6392-01 12 89917296 89917296 C A GALNT4 Missense_Mutation p.R344M 0.29 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 9013818 9013818 A G A2ML1 Missense_Mutation p.I1143V 0.10 tolerated(0.51) benign(0.001) TCGA-DU-6392-01 12 9087028 9087028 A G PHC1 Missense_Mutation p.H736R 0.10 deleterious(0) unknown(0) TCGA-DU-6392-01 12 91347739 91347739 A G CCER1 Missense_Mutation p.F261L 0.13 tolerated(0.43) possibly_damaging(0.682) TCGA-DU-6392-01 12 91347827 91347827 G A CCER1 Silent p.S231S 0.26 TCGA-DU-6392-01 12 91347989 91347989 C A CCER1 Missense_Mutation p.E177D 0.46 deleterious(0.03) benign(0.248) TCGA-DU-6392-01 12 9142222 9142222 T A KLRG1 5'UTR 0.28 TCGA-DU-6392-01 12 91450063 91450063 G T KERA 5'UTR 0.32 TCGA-DU-6392-01 12 91502238 91502238 C A LUM Missense_Mutation p.E173D 0.10 tolerated(0.83) benign(0.008) TCGA-DU-6392-01 12 9225448 9225448 T C A2M Missense_Mutation p.H1259R 0.19 deleterious(0) benign(0.232) TCGA-DU-6392-01 12 92814775 92814775 C A CLLU1OS Intron 0.36 TCGA-DU-6392-01 12 92818761 92818761 T G CLLU1 Missense_Mutation p.I102S 0.11 benign(0.412) TCGA-DU-6392-01 12 9307414 9307414 C T PZP Missense_Mutation p.R1191H 0.23 deleterious(0.05) probably_damaging(0.997) TCGA-DU-6392-01 12 93100751 93100751 C T C12orf74 Missense_Mutation p.A115V 0.31 tolerated(0.08) benign(0.046) TCGA-DU-6392-01 12 93101520 93101520 C T C12orf74 3'UTR 0.33 TCGA-DU-6392-01 12 93157910 93157910 G A PLEKHG7 Missense_Mutation p.D292N 0.38 deleterious(0.03) possibly_damaging(0.644) TCGA-DU-6392-01 12 93169839 93169839 G A EEA1 Missense_Mutation p.S1395F 0.42 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 94645258 94645258 G A PLXNC1 Nonsense_Mutation p.W945* 0.40 TCGA-DU-6392-01 12 94976228 94976228 C T TMCC3 Silent p.P55P 0.41 TCGA-DU-6392-01 12 95228215 95228215 A T MIR492 RNA 0.31 TCGA-DU-6392-01 12 95228373 95228373 G T MIR492 3'Flank 0.33 TCGA-DU-6392-01 12 95451579 95451580 - T NR2C1 Frame_Shift_Ins p.I207Nfs*9 0.27 TCGA-DU-6392-01 12 95452161 95452161 T C NR2C1 Missense_Mutation p.I157V 0.37 tolerated(0.67) probably_damaging(0.935) TCGA-DU-6392-01 12 95605029 95605029 G A FGD6 Missense_Mutation p.P11S 0.30 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 12 95650977 95650977 T C VEZT Missense_Mutation p.S74P 0.33 tolerated(0.24) benign(0.002) TCGA-DU-6392-01 12 95676134 95676134 C T VEZT Missense_Mutation p.R348W 0.25 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 12 95887833 95887833 C T METAP2 Nonsense_Mutation p.R144* 0.45 TCGA-DU-6392-01 12 95905716 95905716 G T METAP2 Missense_Mutation p.R337I 0.21 tolerated(0.12) probably_damaging(0.958) TCGA-DU-6392-01 12 95907642 95907642 A G METAP2 Missense_Mutation p.T467A 0.09 deleterious(0.01) benign(0.133) TCGA-DU-6392-01 12 95918498 95918498 C T USP44 Missense_Mutation p.C564Y 0.30 tolerated(1) benign(0.021) TCGA-DU-6392-01 12 95927508 95927508 C T USP44 Silent p.K175K 0.30 TCGA-DU-6392-01 12 96052743 96052743 A - NTN4 3'UTR 0.17 TCGA-DU-6392-01 12 960934 960934 G A WNK1 Intron 0.35 TCGA-DU-6392-01 12 96346512 96346512 C A AMDHD1 Missense_Mutation p.A52D 0.24 tolerated(0.59) benign(0.008) TCGA-DU-6392-01 12 96350567 96350567 G A AMDHD1 Silent p.L138L 0.12 TCGA-DU-6392-01 12 96359553 96359553 C T AMDHD1 Missense_Mutation p.S343L 0.10 deleterious(0) possibly_damaging(0.884) TCGA-DU-6392-01 12 96394849 96394849 G A LTA4H Missense_Mutation p.A585V 0.27 deleterious(0.05) benign(0.33) TCGA-DU-6392-01 12 96407006 96407006 C T LTA4H Missense_Mutation p.A447T 0.14 tolerated(0.68) benign(0.001) TCGA-DU-6392-01 12 96691079 96691079 C T CDK17 Missense_Mutation p.C281Y 0.10 tolerated(0.08) probably_damaging(1) TCGA-DU-6392-01 12 97339521 97339522 - A NEDD1 Frame_Shift_Ins p.I578Nfs*8 0.34 TCGA-DU-6392-01 12 98928133 98928133 C T TMPO 3'UTR 0.30 TCGA-DU-6392-01 12 98989291 98989291 C T SLC25A3 Missense_Mutation p.H80Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 12 98992475 98992475 T C SLC25A3 Missense_Mutation p.L213P 0.11 tolerated(0.06) benign(0.02) TCGA-DU-6392-01 12 99121056 99121056 G T APAF1 Missense_Mutation p.D1188Y 0.08 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 13 100617767 100617767 T C ZIC5 Missense_Mutation p.N619S 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-DU-6392-01 13 100617819 100617819 C T ZIC5 Missense_Mutation p.V602M 0.31 deleterious(0.04) probably_damaging(0.97) TCGA-DU-6392-01 13 100635217 100635217 A G ZIC2 Missense_Mutation p.H300R 0.43 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 13 100764296 100764296 G T PCCA Missense_Mutation p.S94I 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 101735165 101735165 G A NALCN Silent p.L1254L 0.13 TCGA-DU-6392-01 13 101763479 101763479 C T NALCN Missense_Mutation p.R764H 0.40 tolerated(0.14) benign(0.225) TCGA-DU-6392-01 13 103268766 103268766 C A TPP2 Silent p.I137I 0.20 TCGA-DU-6392-01 13 103287939 103287939 C T TPP2 Silent p.L466L 0.36 TCGA-DU-6392-01 13 103338671 103338671 C T METTL21C Missense_Mutation p.E169K 0.27 tolerated(0.2) possibly_damaging(0.869) TCGA-DU-6392-01 13 103491950 103491950 C T BIVM-ERCC5 Missense_Mutation p.A388V 0.12 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-DU-6392-01 13 103518356 103518356 C T ERCC5 Intron 0.14 TCGA-DU-6392-01 13 103710636 103710636 G A SLC10A2 Silent p.I158I 0.29 TCGA-DU-6392-01 13 103718407 103718407 G A SLC10A2 Missense_Mutation p.P65S 0.36 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 13 107211822 107211822 C T ARGLU1 Silent p.E177E 0.44 TCGA-DU-6392-01 13 108862336 108862336 C A LIG4 Missense_Mutation p.E427D 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 109459053 109459053 C T MYO16 Silent p.Y234Y 0.41 TCGA-DU-6392-01 13 110434638 110434638 C T IRS2 Missense_Mutation p.A1255T 0.43 deleterious(0.01) probably_damaging(0.972) TCGA-DU-6392-01 13 110802650 110802650 C T COL4A1 3'UTR 0.67 TCGA-DU-6392-01 13 110861234 110861234 G A COL4A1 Nonsense_Mutation p.Q219* 0.06 TCGA-DU-6392-01 13 111109744 111109744 C T COL4A2 Missense_Mutation p.P465L 0.25 possibly_damaging(0.766) TCGA-DU-6392-01 13 111118375 111118375 C T COL4A2 Silent p.A668A 0.41 TCGA-DU-6392-01 13 111134925 111134925 G A COL4A2 Missense_Mutation p.G941R 0.36 possibly_damaging(0.732) TCGA-DU-6392-01 13 111176381 111176381 C T RAB20 Silent p.G112G 0.37 TCGA-DU-6392-01 13 111290876 111290876 G T CARKD 3'UTR 0.45 TCGA-DU-6392-01 13 111366570 111366570 C T ING1 5'Flank 0.27 TCGA-DU-6392-01 13 113153377 113153378 - T TUBGCP3 Frame_Shift_Ins p.K811Efs*4 0.30 TCGA-DU-6392-01 13 113465017 113465017 C T ATP11A Missense_Mutation p.R140W 0.28 deleterious(0.04) benign(0.105) TCGA-DU-6392-01 13 113514618 113514618 G A ATP11A Silent p.A915A 0.13 TCGA-DU-6392-01 13 113699134 113699134 C T MCF2L Intron 0.28 TCGA-DU-6392-01 13 113729440 113729440 G A MCF2L Silent p.A415A 0.40 TCGA-DU-6392-01 13 113743999 113743999 C T MCF2L Silent p.Y970Y 0.21 TCGA-DU-6392-01 13 113751159 113751159 G A MCF2L Missense_Mutation p.D1122N 0.56 deleterious_low_confidence(0) possibly_damaging(0.767) TCGA-DU-6392-01 13 113772771 113772771 C T F7 Missense_Mutation p.R284W 0.42 tolerated(0.09) benign(0.008) TCGA-DU-6392-01 13 113772785 113772785 C A F7 Silent p.V288V 0.36 TCGA-DU-6392-01 13 113803537 113803537 G A F10 Silent p.K391K 0.44 TCGA-DU-6392-01 13 113960824 113960824 C T LAMP1 Missense_Mutation p.A29V 0.42 tolerated(0.77) benign(0.004) TCGA-DU-6392-01 13 114078566 114078566 C T ADPRHL1 Nonsense_Mutation p.W291* 0.31 TCGA-DU-6392-01 13 114107713 114107713 C T ADPRHL1 Missense_Mutation p.G14S 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 114135036 114135036 A G DCUN1D2 Silent p.I81I 0.10 TCGA-DU-6392-01 13 114149983 114149983 G A TMCO3 Silent p.A29A 0.34 TCGA-DU-6392-01 13 114193804 114193804 G A TMCO3 Missense_Mutation p.V558I 0.29 tolerated(1) benign(0.001) TCGA-DU-6392-01 13 114290930 114290930 C T TFDP1 Silent p.C307C 0.50 TCGA-DU-6392-01 13 114307678 114307678 T C ATP4B Missense_Mutation p.T105A 0.22 deleterious(0.01) benign(0.279) TCGA-DU-6392-01 13 114325904 114325904 G A GRK1 Silent p.E306E 0.40 TCGA-DU-6392-01 13 114325951 114325951 A G GRK1 Missense_Mutation p.N322S 0.50 deleterious(0) possibly_damaging(0.829) TCGA-DU-6392-01 13 114535710 114535710 C T GAS6 Missense_Mutation p.V284M 0.11 tolerated(0.1) probably_damaging(0.996) TCGA-DU-6392-01 13 114538694 114538694 C T GAS6 Intron 0.48 TCGA-DU-6392-01 13 114751266 114751266 G T RASA3 Missense_Mutation p.A750D 0.33 deleterious(0.01) possibly_damaging(0.632) TCGA-DU-6392-01 13 114757976 114757976 G A RASA3 Silent p.L744L 0.11 TCGA-DU-6392-01 13 115012436 115012436 C T CDC16 Missense_Mutation p.L310F 0.28 tolerated(0.35) benign(0.114) TCGA-DU-6392-01 13 19748045 19748045 C A TUBA3C Silent p.V437V 0.38 TCGA-DU-6392-01 13 19751365 19751365 G A TUBA3C Missense_Mutation p.T253M 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.504) TCGA-DU-6392-01 13 20315777 20315777 C T PSPC1 Missense_Mutation p.R327H 0.47 deleterious(0.02) possibly_damaging(0.548) TCGA-DU-6392-01 13 20398892 20398892 A G ZMYM5 Silent p.L579L 0.36 TCGA-DU-6392-01 13 20577209 20577209 C A ZMYM2 Missense_Mutation p.S356Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 13 20660111 20660111 T G ZMYM2 Missense_Mutation p.I1364S 0.15 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 13 20797204 20797204 C T GJB6 Missense_Mutation p.S139N 0.29 deleterious(0) possibly_damaging(0.623) TCGA-DU-6392-01 13 21395934 21395934 G A XPO4 Missense_Mutation p.T361I 0.37 deleterious(0.05) benign(0.009) TCGA-DU-6392-01 13 21995197 21995197 T C ZDHHC20 Intron 0.34 TCGA-DU-6392-01 13 22275412 22275412 C T FGF9 Silent p.H155H 0.10 TCGA-DU-6392-01 13 23905914 23905914 G T SACS Missense_Mutation p.A4034D 0.31 probably_damaging(0.996) TCGA-DU-6392-01 13 23906959 23906959 G A SACS Nonsense_Mutation p.Q3686* 0.30 TCGA-DU-6392-01 13 23911012 23911012 T C SACS Missense_Mutation p.M2335V 0.10 benign(0.001) TCGA-DU-6392-01 13 23911318 23911318 T C SACS Missense_Mutation p.S2233G 0.12 benign(0.034) TCGA-DU-6392-01 13 23912410 23912410 C A SACS Nonsense_Mutation p.E1869* 0.09 TCGA-DU-6392-01 13 23912848 23912848 C T SACS Missense_Mutation p.A1723T 0.32 benign(0.16) TCGA-DU-6392-01 13 23914982 23914982 C T SACS Silent p.Q1011Q 0.40 TCGA-DU-6392-01 13 23915088 23915088 C T SACS Missense_Mutation p.R976H 0.46 benign(0.004) TCGA-DU-6392-01 13 23929924 23929924 C T SACS Missense_Mutation p.R276H 0.33 probably_damaging(0.997) TCGA-DU-6392-01 13 24860369 24860369 C T SPATA13 Silent p.N773N 0.41 TCGA-DU-6392-01 13 25009094 25009094 G A PARP4 Silent p.P1395P 0.43 TCGA-DU-6392-01 13 25029234 25029234 C T PARP4 Silent p.L893L 0.17 TCGA-DU-6392-01 13 25051995 25051995 C T PARP4 Missense_Mutation p.D545N 0.42 deleterious(0) probably_damaging(0.951) TCGA-DU-6392-01 13 25276209 25276209 G A ATP12A Missense_Mutation p.R679Q 0.41 tolerated(0.07) benign(0.004) TCGA-DU-6392-01 13 25280490 25280490 G T ATP12A Missense_Mutation p.K692N 0.45 deleterious(0) probably_damaging(0.925) TCGA-DU-6392-01 13 25444764 25444764 A G RNF17 Missense_Mutation p.D1445G 0.11 tolerated(0.08) probably_damaging(0.989) TCGA-DU-6392-01 13 25457323 25457323 C T CENPJ Missense_Mutation p.E1337K 0.35 tolerated(1) benign(0.009) TCGA-DU-6392-01 13 25480611 25480611 C A CENPJ Missense_Mutation p.G522V 0.41 tolerated(0.08) benign(0.015) TCGA-DU-6392-01 13 25487072 25487072 A G CENPJ Missense_Mutation p.L31S 0.41 deleterious(0) probably_damaging(0.915) TCGA-DU-6392-01 13 25672306 25672306 A - PABPC3 3'UTR 0.38 TCGA-DU-6392-01 13 25745123 25745123 G A AMER2 Missense_Mutation p.A212V 0.36 tolerated(0.12) benign(0.119) TCGA-DU-6392-01 13 26043137 26043137 C T ATP8A2 Silent p.G33G 0.51 TCGA-DU-6392-01 13 26112196 26112196 C T ATP8A2 Missense_Mutation p.S193F 0.41 deleterious(0) probably_damaging(0.97) TCGA-DU-6392-01 13 26792679 26792679 C A RNF6 Missense_Mutation p.Q86H 0.32 deleterious(0.02) benign(0.036) TCGA-DU-6392-01 13 27250735 27250735 A C WASF3 Missense_Mutation p.K197T 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 13 27649407 27649407 G A USP12 Missense_Mutation p.R285C 0.30 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 13 28009775 28009775 C T GTF3A 3'UTR 0.50 TCGA-DU-6392-01 13 28009965 28009965 T C MTIF3 Silent p.Q228Q 0.11 TCGA-DU-6392-01 13 28127484 28127484 C T LNX2 Missense_Mutation p.A547T 0.26 tolerated(0.77) benign(0.007) TCGA-DU-6392-01 13 28537431 28537431 G A CDX2 Nonsense_Mutation p.Q255* 0.57 TCGA-DU-6392-01 13 28542615 28542615 G T CDX2 Missense_Mutation p.L177I 0.10 tolerated(0.41) possibly_damaging(0.679) TCGA-DU-6392-01 13 28562669 28562669 G A URAD Missense_Mutation p.R36W 0.47 deleterious(0.01) probably_damaging(0.989) TCGA-DU-6392-01 13 28592603 28592603 C T FLT3 Splice_Site p.X847_splice 0.27 TCGA-DU-6392-01 13 28608053 28608053 G A FLT3 Missense_Mutation p.S638L 0.31 deleterious(0) possibly_damaging(0.749) TCGA-DU-6392-01 13 28877367 28877367 G A FLT1 Silent p.I1318I 0.31 TCGA-DU-6392-01 13 28908200 28908200 G T FLT1 Nonsense_Mutation p.S852* 0.43 TCGA-DU-6392-01 13 28964134 28964134 T A FLT1 Missense_Mutation p.I590F 0.42 tolerated(0.18) possibly_damaging(0.772) TCGA-DU-6392-01 13 29242705 29242705 G T POMP Silent p.V86V 0.12 TCGA-DU-6392-01 13 29608054 29608054 T A MTUS2 Nonsense_Mutation p.C756* 0.38 TCGA-DU-6392-01 13 30097549 30097549 G A SLC7A1 Silent p.Y301Y 0.45 TCGA-DU-6392-01 13 30110258 30110258 C T SLC7A1 Missense_Mutation p.R23Q 0.38 tolerated(0.58) benign(0.13) TCGA-DU-6392-01 13 30829592 30829592 C A KATNAL1 Missense_Mutation p.D162Y 0.33 deleterious(0.01) benign(0.229) TCGA-DU-6392-01 13 31233328 31233328 G A USPL1 Silent p.Q1038Q 0.08 TCGA-DU-6392-01 13 31309770 31309770 G A ALOX5AP Missense_Mutation p.V10I 0.61 tolerated(0.49) probably_damaging(0.992) TCGA-DU-6392-01 13 31711411 31711411 A - HSPH1 3'UTR 0.29 TCGA-DU-6392-01 13 31725128 31725128 G A HSPH1 Silent p.I288I 0.30 TCGA-DU-6392-01 13 31797128 31797128 G T B3GALTL Missense_Mutation p.D54Y 0.22 deleterious(0) possibly_damaging(0.594) TCGA-DU-6392-01 13 32348793 32348793 G T RXFP2 Missense_Mutation p.R178S 0.07 tolerated(0.72) benign(0.009) TCGA-DU-6392-01 13 32691602 32691602 A C FRY Missense_Mutation p.K152N 0.10 deleterious(0) probably_damaging(0.92) TCGA-DU-6392-01 13 32698752 32698752 C A FRY Missense_Mutation p.P190H 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 32808887 32808887 G T FRY Missense_Mutation p.D1902Y 0.43 deleterious(0) possibly_damaging(0.467) TCGA-DU-6392-01 13 32826033 32826033 T C FRY Silent p.L2397L 0.09 TCGA-DU-6392-01 13 32906451 32906451 G A BRCA2 Missense_Mutation p.C279Y 0.42 tolerated(0.62) benign(0.066) TCGA-DU-6392-01 13 32912286 32912286 G A BRCA2 Missense_Mutation p.C1265Y 0.41 tolerated(0.62) benign(0.016) TCGA-DU-6392-01 13 32912948 32912948 G A BRCA2 Missense_Mutation p.V1486I 0.34 tolerated(0.45) benign(0.049) TCGA-DU-6392-01 13 33262607 33262607 G A PDS5B Missense_Mutation p.R457Q 0.41 deleterious(0.01) benign(0.269) TCGA-DU-6392-01 13 33634963 33634963 G A KL Missense_Mutation p.A583T 0.49 tolerated(0.4) benign(0.005) TCGA-DU-6392-01 13 33684069 33684069 G T STARD13 Silent p.I996I 0.08 TCGA-DU-6392-01 13 33703428 33703428 G A STARD13 Silent p.V462V 0.29 TCGA-DU-6392-01 13 36050146 36050146 C T MAB21L1 Missense_Mutation p.E44K 0.30 tolerated(0.05) possibly_damaging(0.824) TCGA-DU-6392-01 13 36241642 36241642 C T NBEA Nonsense_Mutation p.R2845* 0.36 TCGA-DU-6392-01 13 36362372 36362372 C T DCLK1 Silent p.Q703Q 0.08 TCGA-DU-6392-01 13 36743130 36743130 C T SOHLH2 3'UTR 0.40 TCGA-DU-6392-01 13 36886330 36886330 C T SPG20 Missense_Mutation p.C562Y 0.23 tolerated(0.31) possibly_damaging(0.845) TCGA-DU-6392-01 13 36909330 36909330 G A SPG20 Missense_Mutation p.T213I 0.42 deleterious(0) benign(0.028) TCGA-DU-6392-01 13 37269218 37269218 G A SERTM1 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-DU-6392-01 13 37269260 37269260 G T SERTM1 Missense_Mutation p.E15D 0.41 tolerated_low_confidence(0.73) benign(0.015) TCGA-DU-6392-01 13 37439691 37439691 C A SMAD9 Missense_Mutation p.R329M 0.21 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 37439705 37439705 C T SMAD9 Silent p.T324T 0.28 TCGA-DU-6392-01 13 37446850 37446850 G A SMAD9 Silent p.S205S 0.42 TCGA-DU-6392-01 13 37569720 37569720 G A ALG5 Missense_Mutation p.A27V 0.26 tolerated(0.53) benign(0.02) TCGA-DU-6392-01 13 37622074 37622074 C T SUPT20H Splice_Site p.X14_splice 0.25 TCGA-DU-6392-01 13 37678880 37678880 G A CSNK1A1L Missense_Mutation p.H172Y 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 13 38160320 38160320 C T POSTN Missense_Mutation p.R284Q 0.42 tolerated(0.61) probably_damaging(0.914) TCGA-DU-6392-01 13 38211112 38211112 G T TRPC4 Missense_Mutation p.D959E 0.26 tolerated_low_confidence(1) benign(0.001) TCGA-DU-6392-01 13 38211113 38211113 T C TRPC4 Missense_Mutation p.D959G 0.11 tolerated_low_confidence(0.13) benign(0.022) TCGA-DU-6392-01 13 39262270 39262270 C T FREM2 Silent p.G263G 0.43 TCGA-DU-6392-01 13 39263238 39263238 C T FREM2 Missense_Mutation p.A586V 0.25 deleterious(0.01) probably_damaging(0.957) TCGA-DU-6392-01 13 39422740 39422740 G A FREM2 Missense_Mutation p.M2104I 0.42 deleterious(0.01) probably_damaging(0.979) TCGA-DU-6392-01 13 39438616 39438616 G T FREM2 Missense_Mutation p.R2619I 0.33 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 13 41323302 41323302 T C MRPS31 Silent p.L310L 0.34 TCGA-DU-6392-01 13 41704782 41704782 G A KBTBD6 Silent p.C622C 0.41 TCGA-DU-6392-01 13 41767128 41767128 C T KBTBD7 Silent p.L422L 0.10 TCGA-DU-6392-01 13 41814544 41814544 T C MTRF1 Silent p.R241R 0.32 TCGA-DU-6392-01 13 41834982 41834982 C T MTRF1 Missense_Mutation p.C21Y 0.28 tolerated_low_confidence(1) benign(0.002) TCGA-DU-6392-01 13 41897203 41897203 C T NAA16 Silent p.Y138Y 0.33 TCGA-DU-6392-01 13 41936259 41936259 C T NAA16 Silent p.Y501Y 0.19 TCGA-DU-6392-01 13 41943238 41943238 C T NAA16 Missense_Mutation p.A589V 0.25 tolerated(0.29) benign(0.139) TCGA-DU-6392-01 13 42161672 42161672 G A VWA8 Silent p.F1749F 0.35 TCGA-DU-6392-01 13 42259287 42259287 C T VWA8 Missense_Mutation p.R1408K 0.45 tolerated(0.79) benign(0) TCGA-DU-6392-01 13 42293595 42293595 G T VWA8 Intron 0.44 TCGA-DU-6392-01 13 42293748 42293748 G A VWA8 Missense_Mutation p.T1032I 0.35 deleterious(0.04) benign(0.24) TCGA-DU-6392-01 13 42393508 42393508 A T VWA8 Missense_Mutation p.I572N 0.12 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 13 42440107 42440107 G A VWA8 Silent p.S426S 0.51 TCGA-DU-6392-01 13 42763391 42763391 C T DGKH Missense_Mutation p.R620W 0.15 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 42773749 42773749 G A DGKH Missense_Mutation p.G778E 0.27 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 43538202 43538203 - T EPSTI1 Frame_Shift_Ins p.L136Afs*14 0.23 TCGA-DU-6392-01 13 44432972 44432972 G A CCDC122 Missense_Mutation p.T206I 0.31 deleterious(0.03) benign(0.133) TCGA-DU-6392-01 13 44433879 44433880 - T CCDC122 Frame_Shift_Ins p.L162Ifs*33 0.27 TCGA-DU-6392-01 13 45008933 45008933 A G TSC22D1 Silent p.N1017N 0.11 TCGA-DU-6392-01 13 45533519 45533519 A G NUFIP1 Missense_Mutation p.S340P 0.09 tolerated(0.26) probably_damaging(0.998) TCGA-DU-6392-01 13 45533618 45533618 T G NUFIP1 Silent p.R307R 0.31 TCGA-DU-6392-01 13 45594492 45594492 A C GPALPP1 Missense_Mutation p.S245R 0.12 tolerated(0.21) benign(0.021) TCGA-DU-6392-01 13 45857753 45857753 C T GTF2F2 3'UTR 0.32 TCGA-DU-6392-01 13 46287719 46287719 C T SPERT Missense_Mutation p.R187W 0.21 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 13 46549874 46549874 C A ZC3H13 Missense_Mutation p.R671M 0.13 unknown(0) TCGA-DU-6392-01 13 46619132 46619132 C T ZC3H13 Missense_Mutation p.G62D 0.44 unknown(0) TCGA-DU-6392-01 13 46638873 46638873 G A CPB2 Nonsense_Mutation p.R236* 0.42 TCGA-DU-6392-01 13 46730704 46730704 C A LCP1 Missense_Mutation p.E120D 0.08 tolerated(0.61) benign(0.002) TCGA-DU-6392-01 13 46937274 46937274 C T KIAA0226L Missense_Mutation p.D301N 0.29 deleterious(0.02) possibly_damaging(0.631) TCGA-DU-6392-01 13 47262041 47262041 C T LRCH1 Nonsense_Mutation p.Q293* 0.22 TCGA-DU-6392-01 13 48615099 48615099 G T NUDT15 Missense_Mutation p.A68S 0.24 deleterious(0.01) benign(0.314) TCGA-DU-6392-01 13 48651342 48651342 T G MED4 Missense_Mutation p.K249T 0.15 tolerated(0.06) probably_damaging(0.994) TCGA-DU-6392-01 13 48664488 48664488 C A MED4 Missense_Mutation p.Q64H 0.05 deleterious(0.04) probably_damaging(0.934) TCGA-DU-6392-01 13 48986512 48986512 C A LPAR6 Missense_Mutation p.K16N 0.11 tolerated(0.25) probably_damaging(0.964) TCGA-DU-6392-01 13 49039423 49039423 A G RB1 Missense_Mutation p.N803S 0.09 tolerated(0.17) probably_damaging(0.997) TCGA-DU-6392-01 13 49070385 49070385 C T RCBTB2 Missense_Mutation p.G486D 0.34 deleterious(0) probably_damaging(0.922) TCGA-DU-6392-01 13 49075921 49075921 C T RCBTB2 Missense_Mutation p.D401N 0.36 deleterious(0.04) possibly_damaging(0.741) TCGA-DU-6392-01 13 49281518 49281518 G T CYSLTR2 Nonsense_Mutation p.E189* 0.07 TCGA-DU-6392-01 13 49741399 49741399 A G FNDC3A Missense_Mutation p.T333A 0.12 tolerated(0.11) benign(0.005) TCGA-DU-6392-01 13 49749565 49749565 C A FNDC3A Missense_Mutation p.P473H 0.09 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 13 49765489 49765489 G A FNDC3A Missense_Mutation p.S732N 0.52 tolerated(0.33) benign(0.003) TCGA-DU-6392-01 13 49794762 49794762 C T MLNR Missense_Mutation p.R97C 0.30 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 13 50054363 50054363 G A SETDB2 Missense_Mutation p.C305Y 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 50489224 50489225 - T SPRYD7 Frame_Shift_Ins p.I189Nfs*4 0.25 TCGA-DU-6392-01 13 50586242 50586242 A G TRIM13 Missense_Mutation p.T59A 0.13 deleterious(0.01) probably_damaging(0.957) TCGA-DU-6392-01 13 50586765 50586765 G A TRIM13 Missense_Mutation p.R233Q 0.29 tolerated(0.34) possibly_damaging(0.853) TCGA-DU-6392-01 13 50587304 50587304 C T TRIM13 3'UTR 0.39 TCGA-DU-6392-01 13 51504821 51504821 G T RNASEH2B Missense_Mutation p.G83C 0.14 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 51915233 51915233 G A SERPINE3 Silent p.P2P 0.55 TCGA-DU-6392-01 13 52025168 52025168 T C INTS6 Missense_Mutation p.Y111C 0.08 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 13 52293442 52293442 G A WDFY2 Missense_Mutation p.R148H 0.30 deleterious(0.03) benign(0.226) TCGA-DU-6392-01 13 52544631 52544631 C T ATP7B Missense_Mutation p.A514T 0.08 tolerated(0.41) benign(0.067) TCGA-DU-6392-01 13 52585455 52585455 G A ATP7B Nonsense_Mutation p.Q7* 0.08 TCGA-DU-6392-01 13 52726773 52726773 G A NEK3 Missense_Mutation p.R122C 0.28 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 13 52742420 52742420 C T MRPS31P5 RNA 0.28 TCGA-DU-6392-01 13 52796710 52796710 G A TPTE2P2 RNA 0.50 TCGA-DU-6392-01 13 53008987 53008987 G A VPS36 Nonsense_Mutation p.Q128* 0.51 TCGA-DU-6392-01 13 53013245 53013245 C T VPS36 Missense_Mutation p.G75E 0.32 deleterious(0.01) possibly_damaging(0.874) TCGA-DU-6392-01 13 53216587 53216587 G A HNRNPA1L2 5'UTR 0.10 TCGA-DU-6392-01 13 53227196 53227196 C A SUGT1 Missense_Mutation p.F18L 0.33 tolerated(0.6) benign(0.005) TCGA-DU-6392-01 13 53282703 53282703 A C LECT1 Missense_Mutation p.S253A 0.30 tolerated(0.74) benign(0.001) TCGA-DU-6392-01 13 53418936 53418936 G A PCDH8 Missense_Mutation p.T991M 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-DU-6392-01 13 60565313 60565313 A G DIAPH3 Missense_Mutation p.I447T 0.42 deleterious(0) possibly_damaging(0.515) TCGA-DU-6392-01 13 61060002 61060002 C T TDRD3 Missense_Mutation p.P213S 0.33 tolerated(0.66) benign(0.281) TCGA-DU-6392-01 13 61083899 61083899 T C TDRD3 Silent p.V287V 0.09 TCGA-DU-6392-01 13 70314679 70314679 A G KLHL1 Missense_Mutation p.V550A 0.42 deleterious(0.02) possibly_damaging(0.465) TCGA-DU-6392-01 13 70681612 70681612 A G KLHL1 Missense_Mutation p.S74P 0.29 tolerated_low_confidence(0.08) possibly_damaging(0.563) TCGA-DU-6392-01 13 72204729 72204729 T C DACH1 Missense_Mutation p.H364R 0.33 benign(0.333) TCGA-DU-6392-01 13 73320902 73320902 G A BORA Missense_Mutation p.D379N 0.41 tolerated(0.16) benign(0.025) TCGA-DU-6392-01 13 73401954 73401954 C A PIBF1 Silent p.R333R 0.09 TCGA-DU-6392-01 13 73505372 73505372 T G PIBF1 Missense_Mutation p.H600Q 0.11 tolerated(0.21) possibly_damaging(0.448) TCGA-DU-6392-01 13 73547757 73547757 C A PIBF1 Missense_Mutation p.L665I 0.36 tolerated(0.32) benign(0.188) TCGA-DU-6392-01 13 74420243 74420243 T G KLF12 Missense_Mutation p.T131P 0.42 tolerated(0.14) possibly_damaging(0.69) TCGA-DU-6392-01 13 75873473 75873473 G A TBC1D4 Missense_Mutation p.S1050L 0.35 tolerated(0.14) probably_damaging(0.965) TCGA-DU-6392-01 13 75887029 75887029 C T TBC1D4 Missense_Mutation p.G743E 0.22 tolerated(0.21) probably_damaging(0.918) TCGA-DU-6392-01 13 75911063 75911063 G T TBC1D4 Missense_Mutation p.F575L 0.08 tolerated(1) probably_damaging(0.995) TCGA-DU-6392-01 13 76169105 76169105 G T UCHL3 Missense_Mutation p.D177Y 0.06 deleterious(0) possibly_damaging(0.853) TCGA-DU-6392-01 13 76287327 76287327 G T RP11-29G8.3 RNA 0.21 TCGA-DU-6392-01 13 76395515 76395515 C T LMO7 Missense_Mutation p.R571C 0.21 tolerated(0.15) benign(0.027) TCGA-DU-6392-01 13 76409325 76409325 G A LMO7 Intron 0.35 TCGA-DU-6392-01 13 76416016 76416016 C T LMO7 Missense_Mutation p.R1077W 0.35 deleterious(0.01) benign(0.001) TCGA-DU-6392-01 13 76427474 76427474 G A LMO7 Silent p.P1304P 0.37 TCGA-DU-6392-01 13 77569213 77569213 T C CLN5 Silent p.R112R 0.11 TCGA-DU-6392-01 13 77581815 77581815 C T FBXL3 Missense_Mutation p.R251Q 0.10 tolerated(0.63) benign(0.117) TCGA-DU-6392-01 13 77631174 77631174 G A MYCBP2 Nonsense_Mutation p.R4424* 0.43 TCGA-DU-6392-01 13 77632512 77632512 C T MYCBP2 Silent p.T4352T 0.39 TCGA-DU-6392-01 13 77661658 77661658 C A MYCBP2 Missense_Mutation p.E3574D 0.38 benign(0.076) TCGA-DU-6392-01 13 77670496 77670496 C T MYCBP2 Missense_Mutation p.R3264H 0.27 probably_damaging(0.989) TCGA-DU-6392-01 13 77671996 77671996 T C MYCBP2 Missense_Mutation p.N3060S 0.30 probably_damaging(0.977) TCGA-DU-6392-01 13 77755901 77755901 C T MYCBP2 Missense_Mutation p.E1588K 0.44 possibly_damaging(0.787) TCGA-DU-6392-01 13 78327371 78327371 G A SLAIN1 Missense_Mutation p.R267Q 0.29 deleterious(0.02) possibly_damaging(0.776) TCGA-DU-6392-01 13 78492476 78492476 G A EDNRB Missense_Mutation p.A168V 0.52 tolerated(0.27) benign(0.019) TCGA-DU-6392-01 13 79219113 79219113 C T RNF219 Missense_Mutation p.C31Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 13 79233233 79233233 A C RNF219 Missense_Mutation p.V8G 0.58 deleterious(0.03) probably_damaging(0.996) TCGA-DU-6392-01 13 79911338 79911338 G T RBM26 Silent p.R851R 0.33 TCGA-DU-6392-01 13 86369036 86369036 G A SLITRK6 Silent p.S536S 0.28 TCGA-DU-6392-01 13 86369282 86369282 G A SLITRK6 Silent p.T454T 0.33 TCGA-DU-6392-01 13 86370399 86370399 T C SLITRK6 Missense_Mutation p.N82S 0.08 tolerated(0.07) possibly_damaging(0.831) TCGA-DU-6392-01 13 88327968 88327968 A C SLITRK5 Missense_Mutation p.I109L 0.38 tolerated(0.19) benign(0.416) TCGA-DU-6392-01 13 92345665 92345665 A G GPC5 Missense_Mutation p.T184A 0.35 tolerated(0.25) benign(0.032) TCGA-DU-6392-01 13 92797193 92797193 C T GPC5 Silent p.C504C 0.22 TCGA-DU-6392-01 13 95230269 95230269 A G TGDS Missense_Mutation p.L272P 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 13 95724085 95724085 A G ABCC4 Missense_Mutation p.I1014T 0.29 tolerated(0.09) benign(0.041) TCGA-DU-6392-01 13 95735409 95735409 G A ABCC4 Missense_Mutation p.R891C 0.29 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 13 96237064 96237064 G A DZIP1 Missense_Mutation p.A817V 0.48 tolerated(0.93) benign(0) TCGA-DU-6392-01 13 96241408 96241408 G A DZIP1 Missense_Mutation p.T676M 0.20 deleterious(0.02) possibly_damaging(0.488) TCGA-DU-6392-01 13 96439386 96439386 C T DNAJC3 Missense_Mutation p.A445V 0.28 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 96453935 96453935 C A UGGT2 3'UTR 0.42 TCGA-DU-6392-01 13 96624864 96624864 C T UGGT2 Missense_Mutation p.R385H 0.09 tolerated(1) benign(0) TCGA-DU-6392-01 13 98645166 98645166 C T IPO5 Silent p.Y248Y 0.33 TCGA-DU-6392-01 13 98652797 98652797 G A IPO5 Missense_Mutation p.A354T 0.14 tolerated(1) possibly_damaging(0.493) TCGA-DU-6392-01 13 98654812 98654812 C T IPO5 Silent p.I418I 0.28 TCGA-DU-6392-01 13 98673358 98673358 C T IPO5 Missense_Mutation p.R1078C 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 13 98828639 98828639 G A RNF113B Silent p.F284F 0.47 TCGA-DU-6392-01 13 98829411 98829411 C T RNF113B Missense_Mutation p.R27Q 0.31 tolerated(0.09) benign(0.034) TCGA-DU-6392-01 13 99030088 99030088 C T FARP1 Silent p.L138L 0.49 TCGA-DU-6392-01 13 99047515 99047515 G A FARP1 Missense_Mutation p.G400D 0.22 tolerated(0.39) benign(0.001) TCGA-DU-6392-01 13 99047635 99047635 C T FARP1 Missense_Mutation p.A440V 0.41 tolerated(0.37) benign(0) TCGA-DU-6392-01 13 99479116 99479116 G A DOCK9 Missense_Mutation p.T1641I 0.50 deleterious(0) benign(0.138) TCGA-DU-6392-01 13 99481710 99481710 C T DOCK9 Missense_Mutation p.A1583T 0.26 deleterious(0.03) possibly_damaging(0.871) TCGA-DU-6392-01 13 99532922 99532922 G A DOCK9 Missense_Mutation p.A917V 0.19 tolerated(1) benign(0.003) TCGA-DU-6392-01 14 100166439 100166439 G A CYP46A1 Splice_Site p.X148_splice 0.27 TCGA-DU-6392-01 14 100357548 100357548 G A EML1 Silent p.E196E 0.41 TCGA-DU-6392-01 14 100363487 100363487 G A EML1 Missense_Mutation p.G247E 0.43 deleterious(0) possibly_damaging(0.844) TCGA-DU-6392-01 14 100615992 100615992 C T DEGS2 Silent p.A46A 0.48 TCGA-DU-6392-01 14 100616003 100616003 G T DEGS2 Missense_Mutation p.L43I 0.17 tolerated(0.25) benign(0.118) TCGA-DU-6392-01 14 100759259 100759259 C T SLC25A29 Silent p.S91S 0.36 TCGA-DU-6392-01 14 100801232 100801232 G A WARS Silent p.L466L 0.33 TCGA-DU-6392-01 14 101005175 101005175 C T BEGAIN Missense_Mutation p.A305T 0.44 tolerated(0.08) possibly_damaging(0.858) TCGA-DU-6392-01 14 101200826 101200826 G A DLK1 Missense_Mutation p.A249T 0.10 tolerated(0.37) benign(0) TCGA-DU-6392-01 14 101350844 101350844 G A RTL1 Silent p.D94D 0.30 TCGA-DU-6392-01 14 101396321 101396321 G T SNORD113-3 RNA 0.08 TCGA-DU-6392-01 14 101451113 101451113 C A RP11-909M7.3 Intron 0.34 TCGA-DU-6392-01 14 101458297 101458297 G A SNORD114-30 RNA 0.09 TCGA-DU-6392-01 14 101491962 101491962 C T MIR1197 RNA 0.32 TCGA-DU-6392-01 14 102474581 102474581 C T DYNC1H1 Missense_Mutation p.R1962C 0.31 probably_damaging(1) TCGA-DU-6392-01 14 102477134 102477134 C T DYNC1H1 Missense_Mutation p.P2155S 0.28 benign(0.212) TCGA-DU-6392-01 14 102478325 102478325 C T DYNC1H1 Silent p.L2244L 0.36 TCGA-DU-6392-01 14 102498707 102498707 C A DYNC1H1 Missense_Mutation p.L3328M 0.48 probably_damaging(0.984) TCGA-DU-6392-01 14 102508756 102508756 G T DYNC1H1 Missense_Mutation p.G4104V 0.11 benign(0.045) TCGA-DU-6392-01 14 102552240 102552240 G T HSP90AA1 Silent p.I250I 0.11 TCGA-DU-6392-01 14 102881081 102881081 T C TECPR2 Missense_Mutation p.Y197H 0.35 tolerated(0.12) benign(0.027) TCGA-DU-6392-01 14 102894699 102894699 C A TECPR2 Missense_Mutation p.P355H 0.09 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 14 103174910 103174910 C T RCOR1 Missense_Mutation p.R257W 0.40 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 14 103336624 103336624 C T TRAF3 Missense_Mutation p.T29M 0.36 tolerated(0.1) benign(0.157) TCGA-DU-6392-01 14 103410310 103410310 G A CDC42BPB Silent p.S1442S 0.40 TCGA-DU-6392-01 14 103410669 103410669 G A CDC42BPB Missense_Mutation p.P1323S 0.52 tolerated(0.23) possibly_damaging(0.595) TCGA-DU-6392-01 14 103418839 103418839 G A CDC42BPB Silent p.C1056C 0.39 TCGA-DU-6392-01 14 103434650 103434650 G A CDC42BPB Silent p.Y762Y 0.38 TCGA-DU-6392-01 14 103442282 103442282 G A CDC42BPB Missense_Mutation p.A442V 0.42 deleterious(0.05) benign(0.126) TCGA-DU-6392-01 14 103452906 103452906 G T CDC42BPB Missense_Mutation p.P203H 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 14 103465943 103465943 C T CDC42BPB Silent p.V185V 0.43 TCGA-DU-6392-01 14 103592767 103592767 C T TNFAIP2 5'UTR 0.47 TCGA-DU-6392-01 14 103804202 103804202 C T EIF5 Intron 0.35 TCGA-DU-6392-01 14 103996558 103996558 G A TRMT61A Silent p.P81P 0.33 TCGA-DU-6392-01 14 104026381 104026381 C T BAG5 Missense_Mutation p.G415E 0.35 tolerated(0.28) benign(0.148) TCGA-DU-6392-01 14 104194142 104194142 G A ZFYVE21 Silent p.P83P 0.36 TCGA-DU-6392-01 14 104205229 104205229 G T PPP1R13B Silent p.I908I 0.37 TCGA-DU-6392-01 14 104460675 104460675 G A TDRD9 Missense_Mutation p.G396D 0.05 tolerated(0.14) benign(0.007) TCGA-DU-6392-01 14 104492412 104492412 C A TDRD9 Missense_Mutation p.S987Y 0.28 deleterious(0) benign(0.141) TCGA-DU-6392-01 14 104570806 104570806 G T ASPG Missense_Mutation p.D307Y 0.43 tolerated(0.26) possibly_damaging(0.706) TCGA-DU-6392-01 14 104639572 104639572 C T KIF26A Missense_Mutation p.A560V 0.20 deleterious(0.02) benign(0.004) TCGA-DU-6392-01 14 104643465 104643465 G T KIF26A Missense_Mutation p.S1447I 0.53 tolerated(0.22) benign(0.276) TCGA-DU-6392-01 14 105179215 105179215 G A INF2 Silent p.E887E 0.34 TCGA-DU-6392-01 14 105241307 105241307 C T AKT1 Missense_Mutation p.V201I 0.31 tolerated(0.13) benign(0.121) TCGA-DU-6392-01 14 105353630 105353630 G A CEP170B Silent p.T1018T 0.19 TCGA-DU-6392-01 14 105409750 105409750 G A AHNAK2 Missense_Mutation p.A4013V 0.46 benign(0.171) TCGA-DU-6392-01 14 105409831 105409831 G A AHNAK2 Missense_Mutation p.S3986F 0.39 probably_damaging(0.995) TCGA-DU-6392-01 14 105411294 105411294 C T AHNAK2 Silent p.V3498V 0.33 TCGA-DU-6392-01 14 105411331 105411331 G A AHNAK2 Missense_Mutation p.S3486L 0.38 benign(0.056) TCGA-DU-6392-01 14 105414282 105414282 G A AHNAK2 Silent p.I2502I 0.10 TCGA-DU-6392-01 14 105416412 105416412 G A AHNAK2 Silent p.D1792D 0.40 TCGA-DU-6392-01 14 105416584 105416584 G A AHNAK2 Missense_Mutation p.A1735V 0.41 benign(0.396) TCGA-DU-6392-01 14 105419259 105419259 G A AHNAK2 Silent p.F843F 0.31 TCGA-DU-6392-01 14 105420882 105420882 G A AHNAK2 Silent p.A302A 0.26 TCGA-DU-6392-01 14 105517471 105517471 C T GPR132 Missense_Mutation p.V335I 0.35 tolerated(0.29) benign(0.001) TCGA-DU-6392-01 14 105517744 105517744 C T GPR132 Missense_Mutation p.A244T 0.35 tolerated(0.06) possibly_damaging(0.461) TCGA-DU-6392-01 14 105609257 105609257 C T JAG2 Silent p.A1164A 0.64 TCGA-DU-6392-01 14 105615643 105615643 A G JAG2 Silent p.L539L 0.07 TCGA-DU-6392-01 14 105643109 105643109 C A NUDT14 Splice_Site p.X64_splice 0.13 TCGA-DU-6392-01 14 105677540 105677540 C T BRF1 Missense_Mutation p.D639N 0.57 tolerated(0.22) benign(0.096) TCGA-DU-6392-01 14 105930811 105930811 C T MTA1 Silent p.C417C 0.50 TCGA-DU-6392-01 14 105954546 105954546 C T CRIP1 Silent p.C28C 0.09 TCGA-DU-6392-01 14 106092228 106092228 G A IGHG4 Missense_Mutation p.S59F 0.18 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 14 106092260 106092260 G A IGHG4 Silent p.S48S 0.39 TCGA-DU-6392-01 14 106110927 106110927 G A IGHG2 Silent p.S67S 0.38 TCGA-DU-6392-01 14 106173685 106173685 C T IGHA1 Silent p.V294V 0.18 TCGA-DU-6392-01 14 106207926 106207926 G A IGHG1 Missense_Mutation p.L293F 0.24 deleterious(0.04) benign(0.23) TCGA-DU-6392-01 14 106207954 106207954 G A IGHG1 Silent p.S283S 0.25 TCGA-DU-6392-01 14 106208418 106208418 T C IGHG1 Missense_Mutation p.Y161C 0.38 deleterious(0.02) probably_damaging(0.933) TCGA-DU-6392-01 14 106208712 106208712 A C IGHG1 Silent p.S102S 0.08 TCGA-DU-6392-01 14 106733396 106733396 A G IGHV1-24 Silent p.P33P 0.09 TCGA-DU-6392-01 14 106963001 106963001 G T IGHV1-45 Missense_Mutation p.S94Y 0.36 deleterious(0.01) possibly_damaging(0.497) TCGA-DU-6392-01 14 107012998 107012998 G A IGHV3-49 Silent p.I99I 0.30 TCGA-DU-6392-01 14 107034966 107034966 C A IGHV5-51 Missense_Mutation p.K38N 0.30 deleterious(0.01) benign(0.134) TCGA-DU-6392-01 14 107083310 107083310 G A IGHV4-59 Silent p.S98S 0.32 TCGA-DU-6392-01 14 107199127 107199127 G T IGHV3-72 Missense_Mutation p.D54E 0.42 tolerated_low_confidence(0.26) benign(0.002) TCGA-DU-6392-01 14 107199192 107199192 G A IGHV3-72 Missense_Mutation p.P33S 0.28 deleterious_low_confidence(0.02) benign(0.322) TCGA-DU-6392-01 14 107283020 107283020 G A IGHV7-81 Silent p.C41C 0.11 TCGA-DU-6392-01 14 19377766 19377766 G A OR11H12 Missense_Mutation p.G58E 0.42 deleterious(0.04) possibly_damaging(0.477) TCGA-DU-6392-01 14 19378537 19378537 C T OR11H12 Missense_Mutation p.A315V 0.30 deleterious(0) possibly_damaging(0.87) TCGA-DU-6392-01 14 19563629 19563629 T C POTEG Intron 0.19 TCGA-DU-6392-01 14 19671075 19671075 A G BMS1P17 RNA 0.21 TCGA-DU-6392-01 14 20248810 20248810 C T OR4M1 Missense_Mutation p.S110L 0.26 deleterious(0) benign(0.407) TCGA-DU-6392-01 14 20249132 20249132 C A OR4M1 Silent p.S217S 0.05 TCGA-DU-6392-01 14 20344654 20344654 C T OR4K2 Silent p.F76F 0.35 TCGA-DU-6392-01 14 20389536 20389536 C A OR4K5 Silent p.I257I 0.25 TCGA-DU-6392-01 14 20389691 20389691 G A OR4K5 Missense_Mutation p.R309K 0.23 tolerated(0.4) benign(0.001) TCGA-DU-6392-01 14 20443743 20443743 A G OR4K15 Silent p.P22P 0.08 TCGA-DU-6392-01 14 20612023 20612023 C A OR4N5 Missense_Mutation p.F43L 0.07 tolerated(1) benign(0.001) TCGA-DU-6392-01 14 20692852 20692852 C T OR11H6 Silent p.S328S 0.34 TCGA-DU-6392-01 14 20711921 20711921 C T OR11H4 Missense_Mutation p.S324L 0.37 deleterious_low_confidence(0.03) benign(0.232) TCGA-DU-6392-01 14 20757860 20757860 C A TTC5 Missense_Mutation p.V417L 0.33 deleterious(0.04) benign(0.001) TCGA-DU-6392-01 14 20824784 20824784 G T PARP2 Missense_Mutation p.W435L 0.06 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 14 20845586 20845586 T C TEP1 Missense_Mutation p.K1981E 0.38 tolerated(1) benign(0.002) TCGA-DU-6392-01 14 20845812 20845812 C T TEP1 Missense_Mutation p.R1941Q 0.39 tolerated(0.34) benign(0) TCGA-DU-6392-01 14 20850092 20850092 G A TEP1 Silent p.C1468C 0.44 TCGA-DU-6392-01 14 20851712 20851712 C T TEP1 Missense_Mutation p.A1268T 0.30 deleterious(0) probably_damaging(0.914) TCGA-DU-6392-01 14 20852291 20852291 C T TEP1 Missense_Mutation p.R1147H 0.42 tolerated(0.08) benign(0.017) TCGA-DU-6392-01 14 20854314 20854314 G A TEP1 Silent p.L968L 0.08 TCGA-DU-6392-01 14 20871901 20871901 C T TEP1 Missense_Mutation p.R392H 0.38 tolerated(0.12) benign(0.037) TCGA-DU-6392-01 14 20925444 20925444 A G APEX1 Missense_Mutation p.Q245R 0.35 tolerated(0.11) benign(0.003) TCGA-DU-6392-01 14 21161892 21161892 C T ANG Missense_Mutation p.R57W 0.21 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 21162172 21162172 C T ANG 3'UTR 0.30 TCGA-DU-6392-01 14 21167681 21167681 C T RNASE4 Missense_Mutation p.R51C 0.08 deleterious(0.04) possibly_damaging(0.495) TCGA-DU-6392-01 14 21463327 21463327 C T METTL17 Silent p.L294L 0.37 TCGA-DU-6392-01 14 21469172 21469172 C A SLC39A2 Missense_Mutation p.L122M 0.30 tolerated(0.1) probably_damaging(0.968) TCGA-DU-6392-01 14 21511156 21511156 C T RNASE7 Missense_Mutation p.A2V 0.45 tolerated(0.09) benign(0.079) TCGA-DU-6392-01 14 21790062 21790062 A G RPGRIP1 Missense_Mutation p.H554R 0.17 tolerated(0.08) benign(0.012) TCGA-DU-6392-01 14 21793078 21793078 G A RPGRIP1 Silent p.S688S 0.33 TCGA-DU-6392-01 14 21794202 21794202 C A RPGRIP1 Missense_Mutation p.D860E 0.21 tolerated(0.44) benign(0.015) TCGA-DU-6392-01 14 21825521 21825521 G T SUPT16H Missense_Mutation p.P832H 0.13 deleterious(0.04) possibly_damaging(0.692) TCGA-DU-6392-01 14 21876468 21876468 C T CHD8 Intron 0.08 TCGA-DU-6392-01 14 21964811 21964811 G A TOX4 3'UTR 0.09 TCGA-DU-6392-01 14 21971507 21971507 G A METTL3 Missense_Mutation p.R178W 0.27 deleterious(0.01) benign(0.424) TCGA-DU-6392-01 14 21991466 21991466 C T SALL2 Missense_Mutation p.R799K 0.28 tolerated(0.16) probably_damaging(0.977) TCGA-DU-6392-01 14 22192368 22192368 G A TRAV3 Missense_Mutation p.G48E 0.32 tolerated(0.12) possibly_damaging(0.492) TCGA-DU-6392-01 14 22465958 22465958 C A TRAV17 Missense_Mutation p.L12I 0.09 deleterious(0.01) possibly_damaging(0.891) TCGA-DU-6392-01 14 22471692 22471692 A G TRAV18 Missense_Mutation p.T39A 0.31 deleterious(0.03) benign(0.073) TCGA-DU-6392-01 14 22592047 22592047 C A TRAV26-1 Silent p.I44I 0.37 TCGA-DU-6392-01 14 22616465 22616465 C T TRAV27 Missense_Mutation p.T69M 0.34 deleterious(0) benign(0.299) TCGA-DU-6392-01 14 22749069 22749069 C T TRAV38-2DV8 Silent p.I12I 0.33 TCGA-DU-6392-01 14 22919132 22919132 G A TRDJ1 3'Flank 0.35 TCGA-DU-6392-01 14 22945582 22945582 C T TRAJ59 Missense_Mutation p.T14M 0.28 unknown(0) TCGA-DU-6392-01 14 23079789 23079789 G A ABHD4 Missense_Mutation p.V322I 0.25 tolerated(0.1) possibly_damaging(0.679) TCGA-DU-6392-01 14 23390200 23390200 C T PRMT5 Silent p.K609K 0.34 TCGA-DU-6392-01 14 23450656 23450656 C T AJUBA Missense_Mutation p.A274T 0.25 tolerated(1) benign(0) TCGA-DU-6392-01 14 23468166 23468166 C T C14orf93 Missense_Mutation p.A23T 0.34 tolerated_low_confidence(0.5) benign(0.003) TCGA-DU-6392-01 14 23511750 23511750 C T PSMB11 Missense_Mutation p.R106W 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 14 23523968 23523968 C T CDH24 Missense_Mutation p.D202N 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 14 23528361 23528361 C T ACIN1 Missense_Mutation p.R1341H 0.08 unknown(0) TCGA-DU-6392-01 14 23549333 23549333 C A ACIN1 Missense_Mutation p.R462M 0.08 possibly_damaging(0.541) TCGA-DU-6392-01 14 23586947 23586947 C T CEBPE Missense_Mutation p.A199T 0.29 tolerated(0.4) benign(0.337) TCGA-DU-6392-01 14 23587828 23587828 G A CEBPE Missense_Mutation p.T158I 0.19 deleterious(0.01) benign(0.002) TCGA-DU-6392-01 14 23588171 23588171 C T CEBPE Missense_Mutation p.A44T 0.33 deleterious(0.01) probably_damaging(0.978) TCGA-DU-6392-01 14 23793493 23793493 C A PABPN1 Silent p.V292V 0.20 TCGA-DU-6392-01 14 23818480 23818480 C T SLC22A17 Splice_Site p.X176_splice 0.34 TCGA-DU-6392-01 14 23842125 23842125 C T IL25 5'UTR 0.57 TCGA-DU-6392-01 14 23848328 23848328 C T CMTM5 Missense_Mutation p.A123V 0.43 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 23871975 23871975 G A MYH6 Silent p.Y311Y 0.31 TCGA-DU-6392-01 14 23881952 23881952 G A MYH7 3'UTR 0.38 TCGA-DU-6392-01 14 23884263 23884263 C T MYH7 Missense_Mutation p.A1834T 0.28 tolerated(0.18) benign(0.04) TCGA-DU-6392-01 14 23893176 23893176 G A MYH7 Silent p.I954I 0.49 TCGA-DU-6392-01 14 23893260 23893260 C T MYH7 Silent p.L926L 0.39 TCGA-DU-6392-01 14 23894044 23894044 C A MYH7 Missense_Mutation p.K871N 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 14 23894525 23894525 C T MYH7 Missense_Mutation p.A797T 0.42 deleterious(0.03) benign(0.011) TCGA-DU-6392-01 14 23897873 23897873 T C MYH7 Missense_Mutation p.S472G 0.35 deleterious(0.01) benign(0.194) TCGA-DU-6392-01 14 23900677 23900677 C T MYH7 Missense_Mutation p.R249Q 0.36 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 14 24026141 24026141 G T THTPA Missense_Mutation p.D59Y 0.19 deleterious(0.02) benign(0.01) TCGA-DU-6392-01 14 24026216 24026216 G A THTPA Missense_Mutation p.A84T 0.33 tolerated(0.13) benign(0.171) TCGA-DU-6392-01 14 24031799 24031799 G A AP1G2 Missense_Mutation p.P472S 0.25 tolerated(0.33) possibly_damaging(0.615) TCGA-DU-6392-01 14 24034396 24034396 G A AP1G2 Missense_Mutation p.R252C 0.27 deleterious(0.01) probably_damaging(0.982) TCGA-DU-6392-01 14 24109024 24109024 G A DHRS2 Missense_Mutation p.V114I 0.33 tolerated(1) benign(0.009) TCGA-DU-6392-01 14 24528897 24528897 T C LRRC16B Silent p.N608N 0.23 TCGA-DU-6392-01 14 24569430 24569430 C T PCK2 Intron 0.27 TCGA-DU-6392-01 14 24588928 24588928 C A DCAF11 Silent p.S305S 0.34 TCGA-DU-6392-01 14 24600812 24600812 G A RP11-468E2.6 Missense_Mutation p.G202R 0.33 tolerated_low_confidence(0.09) probably_damaging(0.98) TCGA-DU-6392-01 14 24601453 24601453 C G FITM1 Missense_Mutation p.C100W 0.32 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 14 24619587 24619587 C A RNF31 Missense_Mutation p.P376H 0.14 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 24620580 24620580 C T RNF31 Nonsense_Mutation p.R577* 0.50 TCGA-DU-6392-01 14 24621172 24621172 G A RNF31 Missense_Mutation p.V701M 0.31 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 14 24626551 24626551 G T RNF31 Missense_Mutation p.R849L 0.24 deleterious(0) benign(0.282) TCGA-DU-6392-01 14 24632221 24632221 G A IRF9 Missense_Mutation p.G76D 0.44 tolerated(0.75) benign(0.075) TCGA-DU-6392-01 14 24633164 24633164 G T IRF9 Missense_Mutation p.Q191H 0.11 tolerated(0.08) benign(0.016) TCGA-DU-6392-01 14 24647340 24647340 G A REC8 Missense_Mutation p.R302H 0.49 deleterious(0.03) probably_damaging(0.991) TCGA-DU-6392-01 14 24649226 24649226 G A REC8 Silent p.A522A 0.28 TCGA-DU-6392-01 14 24649283 24649283 G A REC8 Silent p.P541P 0.35 TCGA-DU-6392-01 14 24656974 24656974 G A IPO4 Missense_Mutation p.L103F 0.37 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 14 24683347 24683347 G A MDP1 Silent p.C138C 0.10 TCGA-DU-6392-01 14 24705324 24705324 G A GMPR2 Missense_Mutation p.R166H 0.36 tolerated(0.3) benign(0.011) TCGA-DU-6392-01 14 24709323 24709324 - A TINF2 Frame_Shift_Ins p.G390Wfs*8 0.08 TCGA-DU-6392-01 14 24737353 24737353 G T RABGGTA Silent p.S370S 0.15 TCGA-DU-6392-01 14 24780618 24780618 G A LTB4R2 Missense_Mutation p.A250T 0.40 deleterious(0.02) possibly_damaging(0.851) TCGA-DU-6392-01 14 24785242 24785242 C T LTB4R Missense_Mutation p.R129C 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 14 24798658 24798658 G A ADCY4 Silent p.D433D 0.29 TCGA-DU-6392-01 14 24798711 24798711 C T ADCY4 Missense_Mutation p.A416T 0.42 tolerated(0.27) benign(0.004) TCGA-DU-6392-01 14 24839159 24839159 C T NFATC4 Silent p.A248A 0.31 TCGA-DU-6392-01 14 24839193 24839193 G A NFATC4 Missense_Mutation p.E260K 0.44 deleterious(0) possibly_damaging(0.8) TCGA-DU-6392-01 14 24842950 24842950 C T NFATC4 Missense_Mutation p.R600W 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 14 24842970 24842970 C T NFATC4 Silent p.I606I 0.42 TCGA-DU-6392-01 14 24884336 24884336 C T NYNRIN Silent p.D1127D 0.39 TCGA-DU-6392-01 14 24897069 24897069 G A CBLN3 Missense_Mutation p.R182C 0.40 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 14 24897112 24897112 G A CBLN3 Silent p.S167S 0.43 TCGA-DU-6392-01 14 24901675 24901675 G A KHNYN Missense_Mutation p.G403D 0.46 deleterious(0.01) probably_damaging(0.963) TCGA-DU-6392-01 14 24976590 24976590 C T CMA1 Missense_Mutation p.V61M 0.36 deleterious(0) probably_damaging(0.931) TCGA-DU-6392-01 14 26939588 26939588 G T NOVA1 Intron 0.21 TCGA-DU-6392-01 14 31139478 31139478 G T SCFD1 Missense_Mutation p.R291M 0.06 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 14 31597844 31597844 A G HECTD1 Missense_Mutation p.L1578S 0.10 deleterious(0.01) probably_damaging(0.969) TCGA-DU-6392-01 14 31641315 31641315 A G HECTD1 Silent p.N390N 0.33 TCGA-DU-6392-01 14 31917218 31917218 A G DTD2 3'UTR 0.27 TCGA-DU-6392-01 14 32559922 32559922 G A ARHGAP5 Missense_Mutation p.S16N 0.40 deleterious(0.05) benign(0.119) TCGA-DU-6392-01 14 32563100 32563100 C T ARHGAP5 Silent p.S1075S 0.34 TCGA-DU-6392-01 14 33291101 33291101 G A AKAP6 Missense_Mutation p.G1361D 0.34 tolerated(0.41) possibly_damaging(0.873) TCGA-DU-6392-01 14 33292223 33292223 G A AKAP6 Missense_Mutation p.S1735N 0.20 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 14 33292407 33292407 C A AKAP6 Missense_Mutation p.D1796E 0.40 tolerated(0.2) probably_damaging(0.996) TCGA-DU-6392-01 14 33293146 33293146 C T AKAP6 Missense_Mutation p.P2043S 0.42 tolerated(0.73) benign(0.009) TCGA-DU-6392-01 14 33293206 33293206 A G AKAP6 Missense_Mutation p.I2063V 0.42 deleterious(0) probably_damaging(0.977) TCGA-DU-6392-01 14 33684459 33684459 T C NPAS3 Missense_Mutation p.F71S 0.19 deleterious(0) benign(0.307) TCGA-DU-6392-01 14 34419872 34419872 G A EGLN3 Silent p.C29C 0.29 TCGA-DU-6392-01 14 35078876 35078876 G A SNX6 Missense_Mutation p.R55W 0.38 deleterious(0) probably_damaging(0.923) TCGA-DU-6392-01 14 35234240 35234240 C T BAZ1A Missense_Mutation p.R1179Q 0.37 deleterious(0.01) probably_damaging(0.968) TCGA-DU-6392-01 14 35576557 35576557 C A PPP2R3C Nonsense_Mutation p.G176* 0.38 TCGA-DU-6392-01 14 36096635 36096635 G T RALGAPA1 Missense_Mutation p.T1667N 0.41 tolerated(0.09) benign(0.311) TCGA-DU-6392-01 14 36217850 36217850 G A RALGAPA1 Missense_Mutation p.R398C 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 36217958 36217958 C A RALGAPA1 Nonsense_Mutation p.E362* 0.35 TCGA-DU-6392-01 14 36219826 36219826 G T RALGAPA1 Silent p.I291I 0.28 TCGA-DU-6392-01 14 36339592 36339592 A G BRMS1L Missense_Mutation p.D294G 0.10 tolerated(0.69) benign(0.006) TCGA-DU-6392-01 14 36988464 36988464 G A NKX2-1 Silent p.G63G 0.58 TCGA-DU-6392-01 14 38266099 38266099 A C TTC6 Missense_Mutation p.M1326L 0.12 tolerated(1) benign(0.008) TCGA-DU-6392-01 14 38281612 38281612 C A TTC6 Missense_Mutation p.L1555I 0.11 tolerated(0.1) probably_damaging(0.996) TCGA-DU-6392-01 14 38296400 38296400 G T TTC6 Splice_Site p.X1710_splice 0.31 TCGA-DU-6392-01 14 38311599 38311599 G A TTC6 3'UTR 0.29 TCGA-DU-6392-01 14 39524384 39524384 T C SEC23A Missense_Mutation p.D541G 0.09 deleterious(0.01) possibly_damaging(0.837) TCGA-DU-6392-01 14 39565205 39565205 C A SEC23A Missense_Mutation p.A40S 0.11 tolerated(0.1) benign(0.005) TCGA-DU-6392-01 14 39621037 39621037 C T TRAPPC6B Missense_Mutation p.A120T 0.29 tolerated(0.15) possibly_damaging(0.841) TCGA-DU-6392-01 14 39646666 39646666 C T PNN Missense_Mutation p.P102L 0.36 tolerated(0.61) benign(0.184) TCGA-DU-6392-01 14 39648331 39648331 G T PNN Missense_Mutation p.V179F 0.37 deleterious(0.04) possibly_damaging(0.899) TCGA-DU-6392-01 14 39650606 39650606 C T PNN Nonsense_Mutation p.R565* 0.42 TCGA-DU-6392-01 14 39716859 39716860 - A MIA2 Frame_Shift_Ins p.D364Rfs*5 0.47 TCGA-DU-6392-01 14 39771384 39771384 G T CTAGE5 Nonsense_Mutation p.E288* 0.06 TCGA-DU-6392-01 14 39790251 39790251 G T CTAGE5 Nonsense_Mutation p.G560* 0.46 TCGA-DU-6392-01 14 42356285 42356285 G A LRFN5 Missense_Mutation p.D153N 0.15 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 14 42356327 42356327 G T LRFN5 Missense_Mutation p.V167F 0.44 deleterious(0) possibly_damaging(0.876) TCGA-DU-6392-01 14 42356641 42356641 C T LRFN5 Silent p.G271G 0.38 TCGA-DU-6392-01 14 42356643 42356643 G A LRFN5 Missense_Mutation p.R272H 0.41 deleterious(0.02) probably_damaging(0.978) TCGA-DU-6392-01 14 42356889 42356889 C A LRFN5 Missense_Mutation p.A354D 0.33 tolerated(0.27) benign(0.063) TCGA-DU-6392-01 14 42360514 42360514 G T LRFN5 Missense_Mutation p.D483Y 0.38 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 14 42360875 42360875 G A LRFN5 Missense_Mutation p.C603Y 0.26 tolerated(0.72) benign(0.001) TCGA-DU-6392-01 14 42360968 42360968 C T LRFN5 Missense_Mutation p.T634I 0.21 tolerated_low_confidence(0.14) benign(0.034) TCGA-DU-6392-01 14 44975486 44975486 C A FSCB Missense_Mutation p.R235S 0.33 tolerated(0.54) benign(0.047) TCGA-DU-6392-01 14 45370061 45370061 A C C14orf28 Missense_Mutation p.K141N 0.26 deleterious_low_confidence(0.01) benign(0.266) TCGA-DU-6392-01 14 45370113 45370113 C T C14orf28 Nonsense_Mutation p.R159* 0.33 TCGA-DU-6392-01 14 45432170 45432170 T C FAM179B Silent p.P182P 0.08 TCGA-DU-6392-01 14 45535897 45535897 G A FAM179B Missense_Mutation p.R1506H 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 14 45571854 45571854 G A PRPF39 Missense_Mutation p.R231H 0.43 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 14 45605352 45605352 G A FANCM Missense_Mutation p.A40T 0.35 tolerated(0.12) benign(0.017) TCGA-DU-6392-01 14 45605531 45605531 C T FANCM Silent p.S99S 0.09 TCGA-DU-6392-01 14 45633578 45633578 G A FANCM Missense_Mutation p.R533H 0.35 deleterious(0) possibly_damaging(0.899) TCGA-DU-6392-01 14 45645467 45645467 G A FANCM Silent p.T1170T 0.46 TCGA-DU-6392-01 14 45687570 45687570 C A MIS18BP1 Missense_Mutation p.Q919H 0.08 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 14 45700410 45700410 G A MIS18BP1 Nonsense_Mutation p.R510* 0.35 TCGA-DU-6392-01 14 47530558 47530558 G A MDGA2 Silent p.I473I 0.36 TCGA-DU-6392-01 14 47530712 47530712 C T MDGA2 Missense_Mutation p.R422H 0.24 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 50088095 50088095 C A MGAT2 Missense_Mutation p.L37I 0.40 tolerated(0.36) benign(0.054) TCGA-DU-6392-01 14 50122474 50122474 C T POLE2 Silent p.E281E 0.37 TCGA-DU-6392-01 14 50218357 50218357 C T KLHDC1 Missense_Mutation p.S363F 0.44 deleterious(0.03) benign(0.1) TCGA-DU-6392-01 14 50238339 50238339 T - KLHDC2 Frame_Shift_Del p.Y62Ifs*38 0.31 TCGA-DU-6392-01 14 50251694 50251694 C T NEMF Missense_Mutation p.M1034I 0.28 tolerated(0.09) probably_damaging(0.955) TCGA-DU-6392-01 14 50295879 50295879 C T NEMF Nonsense_Mutation p.W375* 0.33 TCGA-DU-6392-01 14 50307487 50307487 C T NEMF Missense_Mutation p.R152H 0.08 tolerated(0.09) benign(0.02) TCGA-DU-6392-01 14 50623748 50623748 G A SOS2 Missense_Mutation p.R676C 0.50 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 50626452 50626452 T C SOS2 Missense_Mutation p.K517E 0.36 deleterious(0.01) benign(0.369) TCGA-DU-6392-01 14 50892641 50892641 C T MAP4K5 Missense_Mutation p.S794N 0.39 tolerated(0.05) benign(0.041) TCGA-DU-6392-01 14 51224050 51224050 T - NIN Frame_Shift_Del p.K1233Rfs*3 0.30 TCGA-DU-6392-01 14 51245488 51245488 G A NIN Missense_Mutation p.A157V 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 51347289 51347289 G T ABHD12B Missense_Mutation p.R152M 0.07 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 14 51387279 51387279 C T PYGL Missense_Mutation p.V279I 0.41 deleterious(0.01) probably_damaging(0.985) TCGA-DU-6392-01 14 52186962 52186962 A C FRMD6 Missense_Mutation p.D405A 0.06 tolerated(0.07) benign(0.033) TCGA-DU-6392-01 14 52188733 52188733 G A FRMD6 Missense_Mutation p.S476N 0.18 tolerated(0.12) benign(0.001) TCGA-DU-6392-01 14 52188794 52188794 C A FRMD6 Missense_Mutation p.H496Q 0.10 tolerated(0.42) benign(0.07) TCGA-DU-6392-01 14 52194509 52194509 G T FRMD6 Missense_Mutation p.S544I 0.36 deleterious(0) possibly_damaging(0.83) TCGA-DU-6392-01 14 52194543 52194543 C T FRMD6 Silent p.F555F 0.31 TCGA-DU-6392-01 14 52535644 52535644 C T NID2 Silent p.L23L 0.12 TCGA-DU-6392-01 14 52781701 52781701 G A PTGER2 Silent p.Q145Q 0.39 TCGA-DU-6392-01 14 52922112 52922112 C T TXNDC16 Missense_Mutation p.S591N 0.51 deleterious(0.04) possibly_damaging(0.532) TCGA-DU-6392-01 14 52922169 52922169 T C TXNDC16 Missense_Mutation p.Y572C 0.28 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 14 53003474 53003474 A C TXNDC16 Missense_Mutation p.L119V 0.32 tolerated(0.34) possibly_damaging(0.638) TCGA-DU-6392-01 14 53251269 53251269 G A GNPNAT1 Missense_Mutation p.H34Y 0.35 deleterious(0.05) benign(0) TCGA-DU-6392-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.14 TCGA-DU-6392-01 14 54894382 54894382 G A CNIH1 3'UTR 0.21 TCGA-DU-6392-01 14 54996915 54996915 T C CGRRF1 Silent p.Y131Y 0.39 TCGA-DU-6392-01 14 55005088 55005088 C T CGRRF1 Missense_Mutation p.P329L 0.47 tolerated_low_confidence(0.38) benign(0) TCGA-DU-6392-01 14 55034670 55034670 C T SAMD4A Silent p.G12G 0.20 TCGA-DU-6392-01 14 55255739 55255739 C T SAMD4A 3'UTR 0.31 TCGA-DU-6392-01 14 55408345 55408345 G T WDHD1 Missense_Mutation p.R1085S 0.34 deleterious(0.01) benign(0.166) TCGA-DU-6392-01 14 55510641 55510641 C T SOCS4 Silent p.Y294Y 0.33 TCGA-DU-6392-01 14 55511019 55511019 G T SOCS4 Missense_Mutation p.K420N 0.17 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 14 57082683 57082683 G A TMEM260 Silent p.R293R 0.37 TCGA-DU-6392-01 14 57268382 57268382 G A OTX2 3'UTR 0.36 TCGA-DU-6392-01 14 57938047 57938047 A C C14orf105 3'UTR 0.36 TCGA-DU-6392-01 14 58056155 58056155 C T SLC35F4 Silent p.T158T 0.15 TCGA-DU-6392-01 14 58063577 58063577 G T SLC35F4 Silent p.T13T 0.19 TCGA-DU-6392-01 14 58471494 58471494 C T C14orf37 Missense_Mutation p.R762Q 0.07 deleterious(0) benign(0.417) TCGA-DU-6392-01 14 58605246 58605246 G T C14orf37 Silent p.S277S 0.45 TCGA-DU-6392-01 14 58678106 58678106 C A ACTR10 Missense_Mutation p.L147M 0.36 tolerated(0.06) benign(0.208) TCGA-DU-6392-01 14 58690342 58690342 C T ACTR10 Missense_Mutation p.R213C 0.39 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 14 58698849 58698849 G A ACTR10 Silent p.L312L 0.09 TCGA-DU-6392-01 14 58737155 58737155 G A PSMA3 Missense_Mutation p.E204K 0.30 deleterious(0) benign(0.073) TCGA-DU-6392-01 14 58814450 58814451 - A ARID4A Frame_Shift_Ins p.D423Rfs*24 0.72 TCGA-DU-6392-01 14 58831083 58831083 A G ARID4A Missense_Mutation p.K759R 0.09 tolerated_low_confidence(0.11) benign(0.021) TCGA-DU-6392-01 14 58831193 58831193 C T ARID4A Nonsense_Mutation p.R796* 0.21 TCGA-DU-6392-01 14 58831663 58831663 C T ARID4A Silent p.I952I 0.44 TCGA-DU-6392-01 14 58831923 58831923 G C ARID4A Missense_Mutation p.G1039A 0.28 tolerated(0.2) probably_damaging(0.999) TCGA-DU-6392-01 14 58869412 58869412 G A TOMM20L Silent p.T65T 0.32 TCGA-DU-6392-01 14 59112616 59112616 C T DACT1 Silent p.A425A 0.30 TCGA-DU-6392-01 14 59112882 59112882 G A DACT1 Missense_Mutation p.S514N 0.07 tolerated(0.25) benign(0.1) TCGA-DU-6392-01 14 59113084 59113084 C A DACT1 Missense_Mutation p.N581K 0.25 deleterious(0.04) benign(0.015) TCGA-DU-6392-01 14 59113639 59113639 C T DACT1 Silent p.F766F 0.36 TCGA-DU-6392-01 14 59730237 59730237 C A DAAM1 Silent p.I14I 0.10 TCGA-DU-6392-01 14 59835392 59835392 C T DAAM1 Missense_Mutation p.R1018C 0.17 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 14 60574554 60574554 C T PCNXL4 Intron 0.33 TCGA-DU-6392-01 14 60574564 60574564 T C PCNXL4 Intron 0.10 TCGA-DU-6392-01 14 60574906 60574906 C A PCNXL4 Intron 0.09 TCGA-DU-6392-01 14 60581478 60581479 - T PCNXL4 Frame_Shift_Ins p.L18Ffs*80 0.26 TCGA-DU-6392-01 14 60619860 60619860 G A DHRS7 Missense_Mutation p.R144C 0.41 tolerated(0.09) benign(0.159) TCGA-DU-6392-01 14 60756575 60756575 G A PPM1A Missense_Mutation p.R408H 0.21 tolerated(0.14) benign(0.001) TCGA-DU-6392-01 14 60903561 60903561 G A C14orf39 3'UTR 0.07 TCGA-DU-6392-01 14 61952287 61952287 G A PRKCH Missense_Mutation p.R449H 0.41 tolerated(0.14) possibly_damaging(0.802) TCGA-DU-6392-01 14 61997175 61997175 C T RP11-47I22.4 Silent p.G46G 0.33 TCGA-DU-6392-01 14 62204914 62204914 A G HIF1A Silent p.L477L 0.08 TCGA-DU-6392-01 14 62259551 62259551 G A SNAPC1 Missense_Mutation p.D335N 0.34 tolerated(0.36) benign(0.004) TCGA-DU-6392-01 14 63269221 63269221 C T KCNH5 Missense_Mutation p.A550T 0.48 deleterious(0) possibly_damaging(0.864) TCGA-DU-6392-01 14 63747715 63747715 C A RHOJ Silent p.L88L 0.41 TCGA-DU-6392-01 14 63862003 63862003 C T PPP2R5E Silent p.R227R 0.32 TCGA-DU-6392-01 14 64152887 64152887 C A SGPP1 Missense_Mutation p.G421V 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-DU-6392-01 14 64453335 64453335 G T SYNE2 Missense_Mutation p.K771N 0.35 benign(0.218) TCGA-DU-6392-01 14 64465654 64465654 C A SYNE2 Missense_Mutation p.L1126I 0.39 probably_damaging(0.998) TCGA-DU-6392-01 14 64469558 64469558 A T SYNE2 Nonsense_Mutation p.K1303* 0.12 TCGA-DU-6392-01 14 64473928 64473928 T C SYNE2 Missense_Mutation p.L1522S 0.42 benign(0.003) TCGA-DU-6392-01 14 64497763 64497763 T C SYNE2 Silent p.D2303D 0.19 TCGA-DU-6392-01 14 64596583 64596583 A G SYNE2 Silent p.L4701L 0.41 TCGA-DU-6392-01 14 64606673 64606673 C T SYNE2 Missense_Mutation p.S4953L 0.38 possibly_damaging(0.876) TCGA-DU-6392-01 14 64608684 64608684 C T SYNE2 Missense_Mutation p.R5062C 0.27 probably_damaging(0.999) TCGA-DU-6392-01 14 64619315 64619315 G T SYNE2 Missense_Mutation p.A5225S 0.40 benign(0.316) TCGA-DU-6392-01 14 64630256 64630256 C T SYNE2 Missense_Mutation p.A5479V 0.33 benign(0.132) TCGA-DU-6392-01 14 64700077 64700077 C T ESR2 Intron 0.44 TCGA-DU-6392-01 14 64879239 64879239 C T MTHFD1 Missense_Mutation p.S79F 0.34 tolerated(0.26) benign(0.061) TCGA-DU-6392-01 14 64916229 64916229 C T MTHFD1 Silent p.A782A 0.39 TCGA-DU-6392-01 14 64920503 64920503 C T MTHFD1 Missense_Mutation p.A830V 0.35 tolerated(0.13) benign(0.207) TCGA-DU-6392-01 14 64920513 64920513 C T MTHFD1 Silent p.I833I 0.13 TCGA-DU-6392-01 14 64936301 64936301 T C AKAP5 Missense_Mutation p.S397P 0.07 deleterious(0.01) possibly_damaging(0.881) TCGA-DU-6392-01 14 64936505 64936505 C A AKAP5 3'UTR 0.42 TCGA-DU-6392-01 14 65008248 65008248 C T HSPA2 Silent p.G227G 0.32 TCGA-DU-6392-01 14 65056008 65056008 G A PPP1R36 Silent p.L407L 0.09 TCGA-DU-6392-01 14 65197870 65197870 C T PLEKHG3 Missense_Mutation p.H222Y 0.40 deleterious(0.02) probably_damaging(0.984) TCGA-DU-6392-01 14 65207966 65207966 C T PLEKHG3 Silent p.S521S 0.09 TCGA-DU-6392-01 14 65209908 65209908 C T PLEKHG3 Silent p.D993D 0.45 TCGA-DU-6392-01 14 65263287 65263287 G A SPTB Silent p.R443R 0.39 TCGA-DU-6392-01 14 65264467 65264467 G T SPTB Missense_Mutation p.L388I 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 14 65381186 65381186 G A CHURC1 Nonsense_Mutation p.W18* 0.31 TCGA-DU-6392-01 14 65472930 65472930 G T CHURC1-FNTB Intron 0.11 TCGA-DU-6392-01 14 66028381 66028381 G A FUT8 Missense_Mutation p.D34N 0.47 tolerated(0.43) benign(0.118) TCGA-DU-6392-01 14 67382747 67382747 G A GPHN Silent p.T139T 0.27 TCGA-DU-6392-01 14 67525580 67525580 G T GPHN Intron 0.46 TCGA-DU-6392-01 14 67579789 67579789 C T GPHN Silent p.H509H 0.54 TCGA-DU-6392-01 14 67646313 67646313 C T GPHN Missense_Mutation p.L700F 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 67671481 67671481 G C FAM71D Missense_Mutation p.S196T 0.43 deleterious(0.03) possibly_damaging(0.772) TCGA-DU-6392-01 14 68042713 68042713 G A PLEKHH1 Silent p.K781K 0.28 TCGA-DU-6392-01 14 68112518 68112518 A C ARG2 Missense_Mutation p.K174T 0.48 tolerated(0.07) benign(0.014) TCGA-DU-6392-01 14 68118192 68118192 T C VTI1B Silent p.T203T 0.44 TCGA-DU-6392-01 14 68222729 68222729 G A ZFYVE26 Missense_Mutation p.A2241V 0.40 deleterious(0) possibly_damaging(0.567) TCGA-DU-6392-01 14 68251862 68251862 C A ZFYVE26 Missense_Mutation p.S1146I 0.11 tolerated(0.17) possibly_damaging(0.447) TCGA-DU-6392-01 14 68252589 68252589 G A ZFYVE26 Missense_Mutation p.A1097V 0.37 tolerated(0.24) probably_damaging(0.997) TCGA-DU-6392-01 14 68274397 68274397 G A ZFYVE26 Missense_Mutation p.R202W 0.43 deleterious(0.01) benign(0.409) TCGA-DU-6392-01 14 68301880 68301880 G A RAD51B Silent p.L94L 0.36 TCGA-DU-6392-01 14 69256767 69256768 - A ZFP36L1 Frame_Shift_Ins p.C167Lfs*14 0.29 TCGA-DU-6392-01 14 69262515 69262515 T G ZFP36L1 5'Flank 0.18 TCGA-DU-6392-01 14 69787427 69787427 G T GALNT16 Splice_Site p.X60_splice 0.28 TCGA-DU-6392-01 14 69908877 69908877 C T SLC39A9 Silent p.H99H 0.43 TCGA-DU-6392-01 14 69908929 69908929 G A SLC39A9 Missense_Mutation p.V117I 0.10 tolerated(0.19) benign(0.326) TCGA-DU-6392-01 14 70237227 70237227 C T SRSF5 Missense_Mutation p.A137V 0.33 tolerated(0.07) possibly_damaging(0.846) TCGA-DU-6392-01 14 70237985 70237985 G A SRSF5 Missense_Mutation p.R209H 0.35 tolerated(0.11) unknown(0) TCGA-DU-6392-01 14 70714489 70714489 C T ADAM21P1 RNA 0.09 TCGA-DU-6392-01 14 70839672 70839672 T C SYNJ2BP 3'UTR 0.43 TCGA-DU-6392-01 14 70842480 70842480 G T SYNJ2BP Silent p.G70G 0.34 TCGA-DU-6392-01 14 71199843 71199843 C T MAP3K9 Missense_Mutation p.R762H 0.12 deleterious(0) possibly_damaging(0.872) TCGA-DU-6392-01 14 71206852 71206852 A T MAP3K9 Missense_Mutation p.S533T 0.09 deleterious(0.01) probably_damaging(0.94) TCGA-DU-6392-01 14 71500206 71500206 G A PCNX Missense_Mutation p.A1207T 0.33 deleterious(0) possibly_damaging(0.786) TCGA-DU-6392-01 14 71502806 71502806 G A PCNX Missense_Mutation p.V1267I 0.31 tolerated(0.92) benign(0.004) TCGA-DU-6392-01 14 71502809 71502809 G T PCNX Missense_Mutation p.V1268L 0.31 deleterious(0.05) benign(0.213) TCGA-DU-6392-01 14 71524435 71524435 T C PCNX Missense_Mutation p.F1616L 0.36 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 14 72128039 72128039 C T SIPA1L1 Missense_Mutation p.R704W 0.29 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 14 72139292 72139292 G A SIPA1L1 Silent p.T1019T 0.37 TCGA-DU-6392-01 14 72196994 72196994 A G SIPA1L1 Missense_Mutation p.T1634A 0.28 tolerated(0.26) probably_damaging(0.987) TCGA-DU-6392-01 14 72205931 72205931 C T SIPA1L1 3'UTR 0.25 TCGA-DU-6392-01 14 73441590 73441590 A G ZFYVE1 Silent p.C628C 0.32 TCGA-DU-6392-01 14 73442413 73442413 T G ZFYVE1 Missense_Mutation p.K551T 0.14 tolerated(0.53) benign(0.032) TCGA-DU-6392-01 14 73577639 73577639 A G RBM25 Missense_Mutation p.E598G 0.68 benign(0.403) TCGA-DU-6392-01 14 73578420 73578420 G A RBM25 Silent p.K734K 0.37 TCGA-DU-6392-01 14 73718426 73718426 C T PAPLN Missense_Mutation p.A215V 0.38 tolerated(0.19) benign(0.014) TCGA-DU-6392-01 14 73721704 73721704 G A PAPLN Silent p.T508T 0.35 TCGA-DU-6392-01 14 73945427 73945427 C T HEATR4 Missense_Mutation p.A989T 0.42 tolerated_low_confidence(0.31) benign(0.272) TCGA-DU-6392-01 14 73959068 73959068 G A HEATR4 Intron 0.37 TCGA-DU-6392-01 14 74009935 74009935 G A ACOT1 Missense_Mutation p.R281H 0.16 deleterious(0.01) benign(0.044) TCGA-DU-6392-01 14 74125656 74125656 G A DNAL1 Missense_Mutation p.C50Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 74153965 74153965 G A DNAL1 Missense_Mutation p.A90T 0.34 tolerated(0.3) benign(0.05) TCGA-DU-6392-01 14 74189447 74189447 G A ELMSAN1 Missense_Mutation p.T893M 0.40 deleterious(0.02) benign(0.143) TCGA-DU-6392-01 14 74205452 74205452 G A ELMSAN1 Silent p.G420G 0.39 TCGA-DU-6392-01 14 74205678 74205678 C T ELMSAN1 Missense_Mutation p.R345H 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 74413270 74413270 T C FAM161B Silent p.G94G 0.17 TCGA-DU-6392-01 14 74428545 74428545 C T COQ6 Missense_Mutation p.S439F 0.06 deleterious(0.01) benign(0.057) TCGA-DU-6392-01 14 74516428 74516428 G A CCDC176 Silent p.K272K 0.29 TCGA-DU-6392-01 14 74537970 74537970 G A ALDH6A1 Missense_Mutation p.L220F 0.11 tolerated(0.28) benign(0.014) TCGA-DU-6392-01 14 74538062 74538062 G A ALDH6A1 Missense_Mutation p.A189V 0.38 deleterious(0.05) probably_damaging(0.949) TCGA-DU-6392-01 14 74823874 74823874 C T VRTN Silent p.L130L 0.33 TCGA-DU-6392-01 14 74824284 74824284 G A VRTN Silent p.S266S 0.33 TCGA-DU-6392-01 14 74824775 74824775 G T VRTN Missense_Mutation p.G430V 0.10 deleterious(0) possibly_damaging(0.83) TCGA-DU-6392-01 14 75078499 75078499 G A LTBP2 Missense_Mutation p.A50V 0.31 tolerated(0.27) benign(0.273) TCGA-DU-6392-01 14 75139581 75139581 G A AREL1 Missense_Mutation p.H459Y 0.06 deleterious(0.04) benign(0.197) TCGA-DU-6392-01 14 75140811 75140811 A T AREL1 Missense_Mutation p.F362I 0.33 tolerated(0.28) benign(0.009) TCGA-DU-6392-01 14 75248346 75248346 C T YLPM1 Missense_Mutation p.P534S 0.40 unknown(0) TCGA-DU-6392-01 14 75265633 75265633 T C YLPM1 Silent p.A1211A 0.12 TCGA-DU-6392-01 14 75329615 75329615 C T PROX2 Intron 0.42 TCGA-DU-6392-01 14 75330051 75330051 G A PROX2 Missense_Mutation p.P163S 0.50 tolerated(0.21) possibly_damaging(0.628) TCGA-DU-6392-01 14 75376485 75376485 C T RPS6KL1 Missense_Mutation p.G344E 0.28 deleterious(0.04) benign(0.025) TCGA-DU-6392-01 14 75416192 75416192 G A PGF Silent p.V61V 0.38 TCGA-DU-6392-01 14 75513291 75513291 C A MLH3 Missense_Mutation p.S1023I 0.07 deleterious(0.01) benign(0.379) TCGA-DU-6392-01 14 75514329 75514329 G A MLH3 Missense_Mutation p.T677M 0.41 deleterious(0.03) possibly_damaging(0.832) TCGA-DU-6392-01 14 75643203 75643203 C A TMED10 Missense_Mutation p.R27I 0.10 tolerated(0.23) unknown(0) TCGA-DU-6392-01 14 75991505 75991505 A G BATF Missense_Mutation p.T48A 0.33 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 14 76090972 76090972 A - FLVCR2 Frame_Shift_Del p.K277Nfs*10 0.11 TCGA-DU-6392-01 14 76147930 76147930 G A TTLL5 Missense_Mutation p.R75H 0.38 deleterious(0) possibly_damaging(0.883) TCGA-DU-6392-01 14 76330205 76330205 G T TTLL5 Missense_Mutation p.Q1174H 0.08 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 14 76437556 76437556 C T TGFB3 Missense_Mutation p.G187S 0.36 tolerated(0.61) benign(0.015) TCGA-DU-6392-01 14 76548704 76548704 C A IFT43 Missense_Mutation p.P126H 0.07 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 14 76621011 76621011 C T GPATCH2L Missense_Mutation p.A102V 0.44 tolerated(0.61) benign(0.137) TCGA-DU-6392-01 14 76967082 76967082 G A ESRRB 3'UTR 0.47 TCGA-DU-6392-01 14 77236357 77236357 C T VASH1 Missense_Mutation p.R121C 0.47 deleterious(0.03) probably_damaging(0.997) TCGA-DU-6392-01 14 77272762 77272762 C T ANGEL1 Nonsense_Mutation p.W459* 0.24 TCGA-DU-6392-01 14 77318754 77318754 C T C14orf166B Silent p.F258F 0.45 TCGA-DU-6392-01 14 77605800 77605800 G A ZDHHC22 Silent p.T94T 0.50 TCGA-DU-6392-01 14 77719720 77719720 G A TMEM63C Splice_Site p.X740_splice 0.25 TCGA-DU-6392-01 14 77732609 77732609 T C NGB 3'UTR 0.41 TCGA-DU-6392-01 14 77793211 77793211 C T GSTZ1 Missense_Mutation p.T33M 0.25 tolerated(0.11) benign(0.012) TCGA-DU-6392-01 14 77795519 77795519 G T GSTZ1 Missense_Mutation p.Q132H 0.25 tolerated(0.27) benign(0.009) TCGA-DU-6392-01 14 77809722 77809722 G A TMED8 Missense_Mutation p.R187C 0.27 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 14 77844099 77844099 G T SAMD15 Missense_Mutation p.R113I 0.06 tolerated(0.09) possibly_damaging(0.716) TCGA-DU-6392-01 14 77872299 77872299 C A NOXRED1 Missense_Mutation p.D288Y 0.29 deleterious(0.05) probably_damaging(0.932) TCGA-DU-6392-01 14 77942399 77942399 G A ISM2 Silent p.L419L 0.24 TCGA-DU-6392-01 14 78028820 78028820 G T SPTLC2 Missense_Mutation p.L257M 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-DU-6392-01 14 78142174 78142174 A G ALKBH1 Missense_Mutation p.Y189H 0.36 tolerated(0.54) benign(0.06) TCGA-DU-6392-01 14 78184425 78184425 C A SNW1 3'UTR 0.08 TCGA-DU-6392-01 14 78202306 78202306 G A SNW1 Missense_Mutation p.P228S 0.33 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 14 78365463 78365463 G T ADCK1 Missense_Mutation p.K201N 0.45 tolerated(0.34) benign(0.007) TCGA-DU-6392-01 14 78365512 78365512 A G ADCK1 Missense_Mutation p.K218E 0.10 deleterious(0) possibly_damaging(0.614) TCGA-DU-6392-01 14 78390902 78390902 G A ADCK1 Missense_Mutation p.G321S 0.35 tolerated(0.77) benign(0.001) TCGA-DU-6392-01 14 78392212 78392212 G A ADCK1 Missense_Mutation p.D372N 0.37 tolerated(0.07) benign(0.029) TCGA-DU-6392-01 14 79933703 79933703 C T NRXN3 Silent p.I761I 0.47 TCGA-DU-6392-01 14 80669274 80669274 C T DIO2 Missense_Mutation p.A230T 0.34 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 14 80669379 80669379 C T DIO2 Missense_Mutation p.V195I 0.28 tolerated(0.39) probably_damaging(0.974) TCGA-DU-6392-01 14 81307033 81307033 T G CEP128 Missense_Mutation p.K281T 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 81422079 81422079 C A TSHR Missense_Mutation p.L19M 0.09 tolerated_low_confidence(0.07) possibly_damaging(0.576) TCGA-DU-6392-01 14 81422108 81422108 C A TSHR Silent p.P28P 0.41 TCGA-DU-6392-01 14 81606117 81606117 C T TSHR Missense_Mutation p.L263F 0.48 deleterious(0.01) probably_damaging(0.931) TCGA-DU-6392-01 14 81736941 81736941 G A STON2 Intron 0.36 TCGA-DU-6392-01 14 81737106 81737106 A T STON2 Missense_Mutation p.S841T 0.30 tolerated(0.3) possibly_damaging(0.699) TCGA-DU-6392-01 14 81744288 81744288 G A STON2 Missense_Mutation p.T456I 0.36 tolerated(0.1) benign(0.071) TCGA-DU-6392-01 14 81945967 81945967 G A SEL1L Missense_Mutation p.R722W 0.43 deleterious(0) possibly_damaging(0.513) TCGA-DU-6392-01 14 86087934 86087934 C T FLRT2 Missense_Mutation p.L26F 0.46 deleterious(0.01) probably_damaging(0.954) TCGA-DU-6392-01 14 86088012 86088012 C T FLRT2 Nonsense_Mutation p.R52* 0.44 TCGA-DU-6392-01 14 86088857 86088857 C T FLRT2 Silent p.N333N 0.34 TCGA-DU-6392-01 14 86089981 86089981 C T FLRT2 3'UTR 0.46 TCGA-DU-6392-01 14 88729675 88729675 G A KCNK10 Silent p.G91G 0.47 TCGA-DU-6392-01 14 88792790 88792791 - A KCNK10 5'Flank 0.33 TCGA-DU-6392-01 14 89034493 89034493 G A ZC3H14 Missense_Mutation p.V64I 0.48 tolerated(0.2) probably_damaging(0.997) TCGA-DU-6392-01 14 89038558 89038558 C T ZC3H14 Silent p.T140T 0.19 TCGA-DU-6392-01 14 89039186 89039186 G A ZC3H14 Silent p.L232L 0.36 TCGA-DU-6392-01 14 89061060 89061060 C A ZC3H14 Intron 0.08 TCGA-DU-6392-01 14 89083115 89083115 G T EML5 Missense_Mutation p.D1917E 0.29 tolerated(0.06) possibly_damaging(0.455) TCGA-DU-6392-01 14 90755214 90755214 C T NRDE2 Silent p.S835S 0.33 TCGA-DU-6392-01 14 90759193 90759193 C T NRDE2 Missense_Mutation p.E564K 0.38 deleterious(0.01) benign(0.371) TCGA-DU-6392-01 14 90770309 90770309 C T NRDE2 Silent p.T325T 0.34 TCGA-DU-6392-01 14 91155895 91155895 G A TTC7B Silent p.Y313Y 0.38 TCGA-DU-6392-01 14 91386579 91386579 T A RPS6KA5 Silent p.G259G 0.09 TCGA-DU-6392-01 14 91655379 91655379 G T C14orf159 Nonsense_Mutation p.E354* 0.13 TCGA-DU-6392-01 14 91671133 91671133 G A C14orf159 Missense_Mutation p.A510T 0.22 tolerated(0.07) possibly_damaging(0.79) TCGA-DU-6392-01 14 91776271 91776271 G T CCDC88C Missense_Mutation p.S932R 0.35 deleterious(0.01) benign(0.424) TCGA-DU-6392-01 14 91779811 91779811 C A CCDC88C Missense_Mutation p.Q783H 0.28 deleterious(0) possibly_damaging(0.602) TCGA-DU-6392-01 14 91780360 91780360 C T CCDC88C Silent p.T600T 0.31 TCGA-DU-6392-01 14 91927861 91927861 G A SMEK1 Missense_Mutation p.T739M 0.41 tolerated(0.2) possibly_damaging(0.46) TCGA-DU-6392-01 14 91937205 91937205 A G SMEK1 Missense_Mutation p.S533P 0.38 deleterious(0.01) benign(0.125) TCGA-DU-6392-01 14 91947962 91947962 A C SMEK1 Silent p.S291S 0.39 TCGA-DU-6392-01 14 91948197 91948197 G A SMEK1 Missense_Mutation p.S213F 0.33 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 14 92353550 92353550 G A FBLN5 Silent p.G242G 0.07 TCGA-DU-6392-01 14 92470569 92470569 C A TRIP11 Missense_Mutation p.A1251S 0.48 tolerated(0.16) possibly_damaging(0.7) TCGA-DU-6392-01 14 92471958 92471958 C T TRIP11 Missense_Mutation p.D788N 0.30 deleterious(0.01) benign(0.006) TCGA-DU-6392-01 14 93118183 93118183 G A RIN3 Silent p.P263P 0.37 TCGA-DU-6392-01 14 93185138 93185138 C T LGMN Missense_Mutation p.E64K 0.33 deleterious(0) benign(0.355) TCGA-DU-6392-01 14 93276605 93276605 G A GOLGA5 Missense_Mutation p.M333I 0.40 tolerated(0.38) benign(0.001) TCGA-DU-6392-01 14 93408082 93408082 C T ITPK1 Missense_Mutation p.A357T 0.44 tolerated_low_confidence(0.22) benign(0.015) TCGA-DU-6392-01 14 93429188 93429188 C A ITPK1 Missense_Mutation p.R124M 0.31 deleterious(0.02) benign(0.073) TCGA-DU-6392-01 14 94088531 94088531 C T UNC79 Missense_Mutation p.T1474M 0.39 tolerated_low_confidence(0.32) benign(0.001) TCGA-DU-6392-01 14 94155141 94155141 G A UNC79 Missense_Mutation p.R2209H 0.48 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 14 94464466 94464466 G A LINC00521 RNA 0.17 TCGA-DU-6392-01 14 94528948 94528948 G T DDX24 Silent p.A246A 0.12 TCGA-DU-6392-01 14 94545559 94545559 G A DDX24 Missense_Mutation p.A177V 0.46 tolerated(0.6) benign(0.066) TCGA-DU-6392-01 14 94914738 94914738 G T SERPINA11 Missense_Mutation p.T125N 0.33 deleterious(0.04) possibly_damaging(0.821) TCGA-DU-6392-01 14 94914893 94914893 G T SERPINA11 Silent p.I73I 0.06 TCGA-DU-6392-01 14 94964255 94964255 G A SERPINA12 Silent p.A160A 0.29 TCGA-DU-6392-01 14 94964601 94964601 G A SERPINA12 Missense_Mutation p.A45V 0.38 tolerated(0.13) benign(0.08) TCGA-DU-6392-01 14 95033320 95033320 A T SERPINA4 Missense_Mutation p.K221N 0.09 tolerated(0.14) possibly_damaging(0.542) TCGA-DU-6392-01 14 95080923 95080923 T A SERPINA3 Missense_Mutation p.L49I 0.10 tolerated(0.24) benign(0.097) TCGA-DU-6392-01 14 95088767 95088767 C T SERPINA3 Missense_Mutation p.A336V 0.29 tolerated(1) benign(0) TCGA-DU-6392-01 14 95560464 95560464 C T DICER1 Missense_Mutation p.D1709N 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 14 95577792 95577792 G A DICER1 Silent p.G706G 0.39 TCGA-DU-6392-01 14 95669561 95669561 C T CLMN Missense_Mutation p.D709N 0.40 tolerated(0.05) benign(0.266) TCGA-DU-6392-01 14 95670713 95670713 C T CLMN Missense_Mutation p.V325I 0.37 tolerated(1) benign(0.002) TCGA-DU-6392-01 14 95906101 95906101 C T SYNE3 Silent p.P698P 0.26 TCGA-DU-6392-01 14 95912288 95912288 G A SYNE3 Silent p.D530D 0.51 TCGA-DU-6392-01 14 96134556 96134556 G A TCL6 Intron 0.42 TCGA-DU-6392-01 14 96178700 96178700 G A TCL1A Missense_Mutation p.R52C 0.41 tolerated(0.05) possibly_damaging(0.789) TCGA-DU-6392-01 14 96730334 96730334 C T BDKRB1 Silent p.F105F 0.41 TCGA-DU-6392-01 14 96784097 96784097 C A ATG2B Missense_Mutation p.S992I 0.36 deleterious(0.03) benign(0.373) TCGA-DU-6392-01 14 96795843 96795843 G T ATG2B Missense_Mutation p.S620Y 0.09 deleterious(0) possibly_damaging(0.896) TCGA-DU-6392-01 14 96986534 96986534 G A PAPOLA Missense_Mutation p.V51I 0.12 deleterious(0.05) benign(0.437) TCGA-DU-6392-01 14 96994341 96994341 G T PAPOLA Nonsense_Mutation p.E165* 0.31 TCGA-DU-6392-01 14 96998682 96998682 G A PAPOLA Missense_Mutation p.D208N 0.32 tolerated(0.06) possibly_damaging(0.494) TCGA-DU-6392-01 14 97002275 97002275 G A PAPOLA Silent p.Q323Q 0.31 TCGA-DU-6392-01 14 97009208 97009208 G A PAPOLA Missense_Mutation p.A423T 0.28 deleterious(0.05) benign(0.016) TCGA-DU-6392-01 14 97342375 97342375 G T VRK1 Missense_Mutation p.K359N 0.09 tolerated(0.07) benign(0.391) TCGA-DU-6392-01 14 99182651 99182651 C T C14orf177 Silent p.C41C 0.24 TCGA-DU-6392-01 14 99642372 99642372 C T BCL11B Silent p.P267P 0.25 TCGA-DU-6392-01 14 99865307 99865307 C T SETD3 Silent p.P498P 0.30 TCGA-DU-6392-01 14 99879199 99879199 C T SETD3 Intron 0.35 TCGA-DU-6392-01 14 99879293 99879293 C T SETD3 Missense_Mutation p.G282S 0.38 deleterious(0.03) probably_damaging(0.953) TCGA-DU-6392-01 14 99927652 99927652 T G SETD3 Missense_Mutation p.K74N 0.38 tolerated(0.33) possibly_damaging(0.824) TCGA-DU-6392-01 15 100173378 100173378 G T MEF2A Missense_Mutation p.Q18H 0.54 tolerated(0.13) possibly_damaging(0.763) TCGA-DU-6392-01 15 100185844 100185844 C T MEF2A Missense_Mutation p.L45F 0.30 deleterious(0) probably_damaging(0.943) TCGA-DU-6392-01 15 100331336 100331336 G T AC090825.1 5'Flank 0.11 TCGA-DU-6392-01 15 100331713 100331713 T C AC090825.1 5'Flank 0.32 TCGA-DU-6392-01 15 100514500 100514500 G A ADAMTS17 3'UTR 0.41 TCGA-DU-6392-01 15 101425524 101425524 C T ALDH1A3 Missense_Mutation p.T51I 0.35 deleterious(0.01) probably_damaging(0.987) TCGA-DU-6392-01 15 101434132 101434132 C A ALDH1A3 Intron 0.33 TCGA-DU-6392-01 15 101464752 101464752 C T LRRK1 5'UTR 0.55 TCGA-DU-6392-01 15 101528954 101528954 C T LRRK1 Silent p.Y183Y 0.37 TCGA-DU-6392-01 15 101566188 101566188 G A LRRK1 Missense_Mutation p.V751M 0.10 tolerated(0.14) probably_damaging(0.969) TCGA-DU-6392-01 15 101601435 101601435 C A LRRK1 Missense_Mutation p.P1580H 0.12 deleterious(0) possibly_damaging(0.642) TCGA-DU-6392-01 15 101717621 101717621 T G CHSY1 Missense_Mutation p.N794T 0.32 tolerated_low_confidence(0.32) benign(0.026) TCGA-DU-6392-01 15 102186949 102186949 G A TM2D3 Missense_Mutation p.R161W 0.40 deleterious(0.01) possibly_damaging(0.676) TCGA-DU-6392-01 15 102345968 102345968 G A OR4F6 Missense_Mutation p.G16R 0.29 deleterious_low_confidence(0.01) benign(0.292) TCGA-DU-6392-01 15 20193214 20193214 C A IGHV3OR15-7 Missense_Mutation p.Q18H 0.38 tolerated_low_confidence(0.1) possibly_damaging(0.744) TCGA-DU-6392-01 15 20488798 20488798 G T CHEK2P2 RNA 0.19 TCGA-DU-6392-01 15 20489431 20489431 G T CHEK2P2 RNA 0.14 TCGA-DU-6392-01 15 20588520 20588520 C T HERC2P3 RNA 0.53 TCGA-DU-6392-01 15 20643893 20643893 G T HERC2P3 RNA 0.51 TCGA-DU-6392-01 15 22332457 22332457 C A RP11-69H14.6 RNA 0.09 TCGA-DU-6392-01 15 22368619 22368619 C A OR4M2 Missense_Mutation p.T15N 0.41 deleterious(0) benign(0.443) TCGA-DU-6392-01 15 22472960 22472960 G T IGHV4OR15-8 Missense_Mutation p.S104Y 0.71 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 15 22848930 22848930 G A TUBGCP5 Missense_Mutation p.R326Q 0.34 tolerated(0.13) benign(0.056) TCGA-DU-6392-01 15 22873305 22873305 C T TUBGCP5 3'UTR 0.08 TCGA-DU-6392-01 15 22940758 22940758 T C CYFIP1 Silent p.P341P 0.38 TCGA-DU-6392-01 15 22958208 22958208 C T CYFIP1 Silent p.D617D 0.36 TCGA-DU-6392-01 15 23006491 23006491 C T NIPA2 Nonsense_Mutation p.W271* 0.34 TCGA-DU-6392-01 15 23049092 23049092 C T NIPA1 Missense_Mutation p.V243I 0.31 tolerated(0.45) benign(0.001) TCGA-DU-6392-01 15 23330957 23330957 G T HERC2P2 RNA 0.33 TCGA-DU-6392-01 15 23412173 23412173 G T RP11-467N20.5 Missense_Mutation p.S95Y 0.38 probably_damaging(0.956) TCGA-DU-6392-01 15 23692344 23692344 G A GOLGA6L2 5'UTR 0.31 TCGA-DU-6392-01 15 23811803 23811803 G T MKRN3 Missense_Mutation p.A292S 0.49 deleterious(0.02) benign(0.184) TCGA-DU-6392-01 15 24922006 24922006 C T NPAP1 Missense_Mutation p.S331L 0.39 tolerated(0.23) benign(0.148) TCGA-DU-6392-01 15 24922548 24922548 A G NPAP1 Missense_Mutation p.T512A 0.06 tolerated(0.62) benign(0.001) TCGA-DU-6392-01 15 25207266 25207266 G A SNURF Missense_Mutation p.R7H 0.35 tolerated_low_confidence(0.65) benign(0.002) TCGA-DU-6392-01 15 25223596 25223596 C A SNRPN 3'UTR 0.37 TCGA-DU-6392-01 15 25225108 25225108 C A SNRPN 3'Flank 0.54 TCGA-DU-6392-01 15 25351672 25351672 C T SNORD116-29 RNA 0.22 TCGA-DU-6392-01 15 25432740 25432740 C A SNORD115-10 RNA 0.05 TCGA-DU-6392-01 15 25463582 25463582 C T SNORD115-27 5'Flank 0.50 TCGA-DU-6392-01 15 25463599 25463599 C T SNORD115-27 5'Flank 0.54 TCGA-DU-6392-01 15 25463906 25463906 G A SNORD115-28 5'Flank 0.35 TCGA-DU-6392-01 15 25465722 25465722 G A SNORD115-27 RNA 0.30 TCGA-DU-6392-01 15 25477562 25477562 C A SNORD115-34 RNA 0.06 TCGA-DU-6392-01 15 25488588 25488588 G T SNORD115-40 5'Flank 0.44 TCGA-DU-6392-01 15 25601967 25601967 A G UBE3A Silent p.T613T 0.41 TCGA-DU-6392-01 15 25616697 25616697 G T UBE3A Silent p.S211S 0.09 TCGA-DU-6392-01 15 25654339 25654339 C T UBE3A 5'Flank 0.50 TCGA-DU-6392-01 15 25967018 25967018 A G ATP10A Silent p.I383I 0.43 TCGA-DU-6392-01 15 26792881 26792881 G T GABRB3 3'UTR 0.56 TCGA-DU-6392-01 15 26866633 26866633 G A GABRB3 Missense_Mutation p.L97F 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 15 27193350 27193350 G A GABRA5 Silent p.P453P 0.48 TCGA-DU-6392-01 15 28202803 28202803 C T OCA2 Missense_Mutation p.R572H 0.45 deleterious(0) probably_damaging(0.932) TCGA-DU-6392-01 15 28211897 28211897 C T OCA2 Silent p.P525P 0.39 TCGA-DU-6392-01 15 28230277 28230277 C T OCA2 Missense_Mutation p.A433T 0.42 tolerated(0.72) possibly_damaging(0.541) TCGA-DU-6392-01 15 28273046 28273046 C T OCA2 Silent p.P162P 0.30 TCGA-DU-6392-01 15 28369239 28369239 G A HERC2 Missense_Mutation p.L4378F 0.36 benign(0.037) TCGA-DU-6392-01 15 28389916 28389916 G A HERC2 Silent p.R3681R 0.39 TCGA-DU-6392-01 15 28441431 28441431 A C HERC2 Missense_Mutation p.D2730E 0.29 possibly_damaging(0.88) TCGA-DU-6392-01 15 28447534 28447534 T G HERC2 Missense_Mutation p.K2480T 0.46 benign(0.068) TCGA-DU-6392-01 15 28463781 28463781 G A HERC2 Missense_Mutation p.A1961V 0.30 benign(0.022) TCGA-DU-6392-01 15 28483336 28483336 A G HERC2 Missense_Mutation p.V1259A 0.39 possibly_damaging(0.6) TCGA-DU-6392-01 15 29385292 29385292 G A APBA2 Missense_Mutation p.E362K 0.34 deleterious(0.01) benign(0.222) TCGA-DU-6392-01 15 29409369 29409369 C A APBA2 3'UTR 0.30 TCGA-DU-6392-01 15 30003154 30003154 C T TJP1 Missense_Mutation p.R1418H 0.38 deleterious_low_confidence(0.02) benign(0.288) TCGA-DU-6392-01 15 30024971 30024971 G A TJP1 Silent p.G595G 0.37 TCGA-DU-6392-01 15 31202936 31202936 G A FAN1 Missense_Mutation p.A499T 0.22 tolerated(0.6) benign(0.017) TCGA-DU-6392-01 15 31217455 31217455 C A FAN1 Missense_Mutation p.F766L 0.49 tolerated(1) benign(0.002) TCGA-DU-6392-01 15 31239394 31239394 C T MTMR10 Missense_Mutation p.R496Q 0.41 tolerated(0.21) benign(0.252) TCGA-DU-6392-01 15 31295069 31295069 C T TRPM1 Silent p.T1295T 0.38 TCGA-DU-6392-01 15 31318475 31318475 C A TRPM1 Splice_Site p.X1183_splice 0.36 TCGA-DU-6392-01 15 31323354 31323354 C T TRPM1 Missense_Mutation p.D1004N 0.39 tolerated(1) probably_damaging(0.932) TCGA-DU-6392-01 15 31334251 31334251 C T TRPM1 Missense_Mutation p.A681T 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 15 31355430 31355430 C T TRPM1 Missense_Mutation p.V303I 0.28 deleterious(0) possibly_damaging(0.562) TCGA-DU-6392-01 15 31362287 31362287 C A TRPM1 Missense_Mutation p.D93Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 31862287 31862287 G A OTUD7A Nonsense_Mutation p.R89* 0.41 TCGA-DU-6392-01 15 32460237 32460237 C T CHRNA7 Missense_Mutation p.R392C 0.21 deleterious(0.04) probably_damaging(0.935) TCGA-DU-6392-01 15 32912369 32912369 C T ARHGAP11A Missense_Mutation p.H64Y 0.24 tolerated(0.52) benign(0.001) TCGA-DU-6392-01 15 32917784 32917784 A T ARHGAP11A Missense_Mutation p.E271V 0.08 deleterious(0.02) benign(0.012) TCGA-DU-6392-01 15 32928743 32928743 A G ARHGAP11A Missense_Mutation p.N590S 0.32 tolerated(0.09) benign(0.424) TCGA-DU-6392-01 15 33261476 33261476 C A FMN1 Missense_Mutation p.R586I 0.11 deleterious(0) unknown(0) TCGA-DU-6392-01 15 33893742 33893742 C T RYR3 Silent p.N637N 0.40 TCGA-DU-6392-01 15 33955767 33955767 C T RYR3 Silent p.D1816D 0.21 TCGA-DU-6392-01 15 34113774 34113774 C A RYR3 Missense_Mutation p.L3656M 0.44 probably_damaging(0.927) TCGA-DU-6392-01 15 34123219 34123219 C A RYR3 Missense_Mutation p.S3797Y 0.41 benign(0.435) TCGA-DU-6392-01 15 34130616 34130616 C A RYR3 Silent p.A4145A 0.15 TCGA-DU-6392-01 15 34130920 34130920 A G RYR3 Missense_Mutation p.T4247A 0.50 benign(0.001) TCGA-DU-6392-01 15 34150103 34150103 C T RYR3 Silent p.D4710D 0.30 TCGA-DU-6392-01 15 34354990 34354990 C T CHRM5 Silent p.R24R 0.41 TCGA-DU-6392-01 15 34355192 34355192 C T CHRM5 Missense_Mutation p.L92F 0.34 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 15 34531196 34531196 C T SLC12A6 Missense_Mutation p.E868K 0.39 deleterious(0.04) possibly_damaging(0.764) TCGA-DU-6392-01 15 34647979 34647979 C A NUTM1 Missense_Mutation p.S562R 0.11 deleterious(0.02) benign(0.06) TCGA-DU-6392-01 15 34652402 34652402 C A LPCAT4 Missense_Mutation p.K384N 0.10 tolerated(0.18) benign(0.001) TCGA-DU-6392-01 15 35166166 35166166 G T AQR Missense_Mutation p.L1154I 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 35210528 35210528 G A AQR Missense_Mutation p.P425S 0.35 tolerated(0.05) benign(0.04) TCGA-DU-6392-01 15 35274890 35274890 A G ZNF770 Missense_Mutation p.L249S 0.16 tolerated(0.09) possibly_damaging(0.611) TCGA-DU-6392-01 15 35275397 35275397 G T ZNF770 Missense_Mutation p.P80H 0.28 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 15 37100621 37100621 G A C15orf41 Silent p.T271T 0.35 TCGA-DU-6392-01 15 37329158 37329158 C T MEIS2 Missense_Mutation p.D253N 0.32 deleterious(0.01) benign(0.41) TCGA-DU-6392-01 15 38591666 38591666 T C SPRED1 Missense_Mutation p.V42A 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 38643407 38643407 C T SPRED1 Silent p.L293L 0.42 TCGA-DU-6392-01 15 39544356 39544356 C A C15orf54 Missense_Mutation p.T7N 0.10 tolerated_low_confidence(0.07) benign(0.427) TCGA-DU-6392-01 15 39874935 39874935 C T THBS1 Silent p.G203G 0.22 TCGA-DU-6392-01 15 39880839 39880839 C T THBS1 Silent p.G528G 0.16 TCGA-DU-6392-01 15 39883813 39883813 A G THBS1 Missense_Mutation p.N841D 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 15 40265883 40265883 C T EIF2AK4 Missense_Mutation p.S584F 0.41 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 15 40457360 40457360 G A BUB1B Missense_Mutation p.E48K 0.29 deleterious(0) benign(0.371) TCGA-DU-6392-01 15 40565608 40565608 C T PAK6 Missense_Mutation p.H518Y 0.17 deleterious(0) probably_damaging(0.968) TCGA-DU-6392-01 15 40661824 40661824 C T DISP2 Missense_Mutation p.R1171C 0.33 deleterious(0) probably_damaging(0.924) TCGA-DU-6392-01 15 40758375 40758375 G A BAHD1 3'UTR 0.35 TCGA-DU-6392-01 15 40855059 40855059 G A C15orf57 Silent p.G61G 0.35 TCGA-DU-6392-01 15 40915861 40915861 A G CASC5 Silent p.T1159T 0.38 TCGA-DU-6392-01 15 40949590 40949590 G T CASC5 Missense_Mutation p.R2237I 0.35 deleterious(0) probably_damaging(0.973) TCGA-DU-6392-01 15 41105049 41105049 C A ZFYVE19 Missense_Mutation p.L327M 0.25 tolerated(0.1) probably_damaging(1) TCGA-DU-6392-01 15 41107959 41107959 C T PPP1R14D Silent p.R163R 0.52 TCGA-DU-6392-01 15 41192696 41192696 A G VPS18 Silent p.A560A 0.36 TCGA-DU-6392-01 15 41228901 41228901 G A DLL4 Silent p.S572S 0.35 TCGA-DU-6392-01 15 41247771 41247771 G A CHAC1 Silent p.A198A 0.37 TCGA-DU-6392-01 15 41339616 41339616 G A INO80 Missense_Mutation p.L909F 0.50 tolerated(0.19) benign(0.017) TCGA-DU-6392-01 15 41347563 41347563 C A INO80 Splice_Site p.X691_splice 0.18 TCGA-DU-6392-01 15 41372072 41372072 G A INO80 Nonsense_Mutation p.R320* 0.46 TCGA-DU-6392-01 15 41488137 41488137 A C EXD1 Missense_Mutation p.I153M 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 15 41667964 41667964 A G NUSAP1 Missense_Mutation p.K354R 0.11 tolerated(0.1) benign(0.16) TCGA-DU-6392-01 15 41688736 41688736 G A NDUFAF1 Silent p.D174D 0.37 TCGA-DU-6392-01 15 41749993 41749993 C T RTF1 Missense_Mutation p.A194V 0.10 tolerated(0.11) probably_damaging(0.964) TCGA-DU-6392-01 15 41797252 41797252 C T LTK Missense_Mutation p.A646T 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DU-6392-01 15 41797698 41797698 A C LTK Missense_Mutation p.C576W 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 15 41799345 41799345 G A LTK Missense_Mutation p.P497S 0.36 tolerated_low_confidence(0.16) benign(0.003) TCGA-DU-6392-01 15 41988656 41988656 T C MGA Missense_Mutation p.I483T 0.15 deleterious(0) benign(0.24) TCGA-DU-6392-01 15 41989149 41989149 G A MGA Silent p.G647G 0.40 TCGA-DU-6392-01 15 42042025 42042025 C T MGA Missense_Mutation p.R2074C 0.37 tolerated_low_confidence(0.05) benign(0.029) TCGA-DU-6392-01 15 42042740 42042740 C T MGA Missense_Mutation p.T2312I 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 15 42058262 42058262 G A MGA Missense_Mutation p.G2661E 0.35 tolerated(0.57) benign(0.012) TCGA-DU-6392-01 15 42058358 42058358 A C MGA Missense_Mutation p.N2693T 0.13 tolerated_low_confidence(0.19) benign(0.002) TCGA-DU-6392-01 15 42109134 42109134 C T MAPKBP1 Missense_Mutation p.R544W 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 15 42113212 42113212 A G MAPKBP1 Silent p.P894P 0.10 TCGA-DU-6392-01 15 42129066 42129066 C T JMJD7 Missense_Mutation p.R264W 0.43 deleterious(0.01) possibly_damaging(0.67) TCGA-DU-6392-01 15 42133259 42133259 G T PLA2G4B Missense_Mutation p.G351W 0.10 deleterious(0) possibly_damaging(0.795) TCGA-DU-6392-01 15 42138145 42138145 C T PLA2G4B Silent p.I731I 0.38 TCGA-DU-6392-01 15 42151146 42151146 C T SPTBN5 Missense_Mutation p.R2674H 0.30 benign(0.055) TCGA-DU-6392-01 15 42300022 42300022 C T PLA2G4E Missense_Mutation p.A100T 0.36 deleterious(0) probably_damaging(0.919) TCGA-DU-6392-01 15 42360978 42360978 G A PLA2G4D Nonsense_Mutation p.Q798* 0.42 TCGA-DU-6392-01 15 42371773 42371773 G T PLA2G4D Missense_Mutation p.L427M 0.38 deleterious(0) probably_damaging(0.968) TCGA-DU-6392-01 15 42630635 42630635 T A GANC Missense_Mutation p.I597N 0.39 probably_damaging(0.987) TCGA-DU-6392-01 15 42638010 42638010 A C GANC Missense_Mutation p.I762L 0.37 benign(0.006) TCGA-DU-6392-01 15 42640395 42640395 G A GANC Missense_Mutation p.R800Q 0.39 benign(0.01) TCGA-DU-6392-01 15 42652026 42652026 C A CAPN3 Missense_Mutation p.S8Y 0.06 deleterious_low_confidence(0.02) benign(0.281) TCGA-DU-6392-01 15 42681142 42681142 G A CAPN3 Missense_Mutation p.E217K 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 15 42734288 42734288 T C ZNF106 Missense_Mutation p.E1226G 0.09 tolerated(0.06) benign(0.009) TCGA-DU-6392-01 15 42740426 42740426 G T ZNF106 Silent p.S970S 0.07 TCGA-DU-6392-01 15 42744114 42744114 G T ZNF106 Missense_Mutation p.S96Y 0.08 deleterious(0.04) possibly_damaging(0.759) TCGA-DU-6392-01 15 42749452 42749452 C A ZNF106 5'UTR 0.27 TCGA-DU-6392-01 15 43023821 43023821 C T CDAN1 Missense_Mutation p.S579N 0.36 tolerated(0.14) probably_damaging(0.961) TCGA-DU-6392-01 15 43023931 43023931 C T CDAN1 Silent p.L542L 0.11 TCGA-DU-6392-01 15 43026474 43026474 G T CDAN1 Missense_Mutation p.P403T 0.28 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 15 43045409 43045409 A G TTBK2 Missense_Mutation p.S679P 0.38 tolerated_low_confidence(0.09) benign(0.1) TCGA-DU-6392-01 15 43067512 43067512 C T TTBK2 Missense_Mutation p.D607N 0.24 tolerated_low_confidence(0.78) benign(0) TCGA-DU-6392-01 15 43067672 43067672 C A TTBK2 Silent p.V553V 0.37 TCGA-DU-6392-01 15 43075630 43075630 A G TTBK2 Missense_Mutation p.L395P 0.06 tolerated(0.14) benign(0.005) TCGA-DU-6392-01 15 43290423 43290423 G A UBR1 Missense_Mutation p.R1234W 0.34 deleterious(0.01) benign(0.249) TCGA-DU-6392-01 15 43308006 43308006 C T UBR1 Missense_Mutation p.R1030H 0.30 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 43330062 43330062 A G UBR1 Missense_Mutation p.V644A 0.39 tolerated(0.57) benign(0.001) TCGA-DU-6392-01 15 43444011 43444011 A G TMEM62 Missense_Mutation p.H297R 0.13 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 15 43481449 43481449 C T CCNDBP1 Missense_Mutation p.A101V 0.34 deleterious(0.02) benign(0.17) TCGA-DU-6392-01 15 43498536 43498536 G A EPB42 Missense_Mutation p.A567V 0.34 tolerated(0.09) benign(0.127) TCGA-DU-6392-01 15 43500847 43500847 C A EPB42 Missense_Mutation p.R350I 0.25 deleterious(0.03) possibly_damaging(0.476) TCGA-DU-6392-01 15 43512939 43512939 C A EPB42 Nonsense_Mutation p.G29* 0.42 TCGA-DU-6392-01 15 43621357 43621357 A G LCMT2 Missense_Mutation p.L444S 0.09 tolerated(0.61) benign(0.006) TCGA-DU-6392-01 15 43658362 43658362 C T ZSCAN29 Missense_Mutation p.A390T 0.33 tolerated(0.73) benign(0.002) TCGA-DU-6392-01 15 43707815 43707815 C T TP53BP1 Missense_Mutation p.R1689H 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 15 43819268 43819268 C A MAP1A Missense_Mutation p.P1866H 0.40 probably_damaging(0.945) TCGA-DU-6392-01 15 43820241 43820241 C A MAP1A Silent p.P2190P 0.07 TCGA-DU-6392-01 15 43821341 43821341 G A MAP1A Missense_Mutation p.G2557D 0.45 probably_damaging(1) TCGA-DU-6392-01 15 43851062 43851062 G A PPIP5K1 Missense_Mutation p.R1106C 0.48 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-DU-6392-01 15 44028445 44028445 G T RNU6-354P 5'Flank 0.41 TCGA-DU-6392-01 15 44105185 44105185 G A MFAP1 Missense_Mutation p.A296V 0.39 tolerated(0.11) benign(0.273) TCGA-DU-6392-01 15 44105297 44105297 G T MFAP1 Missense_Mutation p.L259M 0.30 tolerated(0.11) probably_damaging(0.926) TCGA-DU-6392-01 15 44107158 44107158 C A MFAP1 Missense_Mutation p.E138D 0.36 tolerated(0.26) benign(0.217) TCGA-DU-6392-01 15 45059499 45059499 C T TRIM69 Silent p.S344S 0.44 TCGA-DU-6392-01 15 45386444 45386444 G A DUOX2 Silent p.C1517C 0.45 TCGA-DU-6392-01 15 45392018 45392018 G A DUOX2 Missense_Mutation p.T1086M 0.22 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 15 45397995 45397995 C T DUOX2 Missense_Mutation p.G727D 0.39 tolerated(0.73) benign(0.006) TCGA-DU-6392-01 15 45406895 45406895 T G DUOXA2 Missense_Mutation p.F31C 0.36 deleterious(0.03) probably_damaging(0.957) TCGA-DU-6392-01 15 45408871 45408871 T C DUOXA2 Silent p.P166P 0.12 TCGA-DU-6392-01 15 45426379 45426379 C T DUOX1 Missense_Mutation p.A60V 0.33 deleterious(0.02) benign(0.403) TCGA-DU-6392-01 15 45427309 45427309 C T DUOX1 Silent p.H105H 0.10 TCGA-DU-6392-01 15 45434273 45434273 C T DUOX1 Silent p.F595F 0.46 TCGA-DU-6392-01 15 45440173 45440173 G T DUOX1 Missense_Mutation p.D874Y 0.28 deleterious(0) possibly_damaging(0.696) TCGA-DU-6392-01 15 45454097 45454097 G T DUOX1 Missense_Mutation p.G1340W 0.25 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 15 45567785 45567785 G A SLC28A2 3'UTR 0.32 TCGA-DU-6392-01 15 45981348 45981348 G T SQRDL Nonsense_Mutation p.E410* 0.37 TCGA-DU-6392-01 15 48063276 48063276 C T SEMA6D Missense_Mutation p.T839M 0.09 tolerated(0.26) benign(0.018) TCGA-DU-6392-01 15 48064018 48064018 G A SEMA6D 3'UTR 0.39 TCGA-DU-6392-01 15 48433489 48433489 C A MYEF2 3'UTR 0.33 TCGA-DU-6392-01 15 48435115 48435115 C T MYEF2 Missense_Mutation p.R598H 0.11 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 15 48443753 48443753 G A MYEF2 Missense_Mutation p.A408V 0.37 tolerated(0.13) benign(0.275) TCGA-DU-6392-01 15 48595092 48595092 G T SLC12A1 3'UTR 0.22 TCGA-DU-6392-01 15 48634277 48634277 A G DUT 3'UTR 0.43 TCGA-DU-6392-01 15 48707780 48707780 G A FBN1 Silent p.G2668G 0.33 TCGA-DU-6392-01 15 48714159 48714159 C T FBN1 Silent p.T2520T 0.26 TCGA-DU-6392-01 15 48802279 48802279 G A FBN1 Missense_Mutation p.A559V 0.22 possibly_damaging(0.789) TCGA-DU-6392-01 15 48829911 48829911 G T FBN1 Silent p.A211A 0.12 TCGA-DU-6392-01 15 48905269 48905269 C T FBN1 Missense_Mutation p.R62H 0.08 probably_damaging(0.987) TCGA-DU-6392-01 15 49309099 49309099 G A SECISBP2L Silent p.A455A 0.41 TCGA-DU-6392-01 15 49327791 49327791 A G SECISBP2L Missense_Mutation p.Y90H 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 49426260 49426260 G A COPS2 Missense_Mutation p.A261V 0.36 deleterious(0) possibly_damaging(0.899) TCGA-DU-6392-01 15 50215583 50215583 T G ATP8B4 Missense_Mutation p.H584P 0.34 deleterious(0.01) probably_damaging(0.939) TCGA-DU-6392-01 15 50279715 50279715 C A ATP8B4 Missense_Mutation p.K207N 0.09 tolerated(0.13) probably_damaging(0.96) TCGA-DU-6392-01 15 50555543 50555543 C T HDC Silent p.T31T 0.43 TCGA-DU-6392-01 15 50570866 50570866 G A GABPB1 Missense_Mutation p.A384V 0.39 deleterious(0.01) benign(0.176) TCGA-DU-6392-01 15 50570879 50570879 G A GABPB1 Nonsense_Mutation p.Q380* 0.10 TCGA-DU-6392-01 15 50595196 50595196 C A GABPB1 Missense_Mutation p.S134I 0.10 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 15 50769490 50769490 T C USP8 Missense_Mutation p.S338P 0.26 tolerated(0.08) probably_damaging(0.958) TCGA-DU-6392-01 15 50784986 50784986 G A USP8 Missense_Mutation p.A775T 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 15 50897065 50897065 T G TRPM7 Missense_Mutation p.M996L 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-DU-6392-01 15 50950006 50950006 C A TRPM7 Nonsense_Mutation p.G32* 0.09 TCGA-DU-6392-01 15 51031993 51031993 C A SPPL2A Missense_Mutation p.R206I 0.12 tolerated(0.19) benign(0.005) TCGA-DU-6392-01 15 51242130 51242130 C T AP4E1 Missense_Mutation p.A475V 0.39 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 15 51741176 51741176 A G DMXL2 3'UTR 0.17 TCGA-DU-6392-01 15 51772245 51772245 A G DMXL2 Missense_Mutation p.I2219T 0.16 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 51975415 51975415 G T SCG3 Splice_Site p.X61_splice 0.08 TCGA-DU-6392-01 15 52060587 52060587 C T TMOD2 Silent p.D85D 0.27 TCGA-DU-6392-01 15 52181338 52181338 T G TMOD3 Missense_Mutation p.F164L 0.37 tolerated(0.5) benign(0.013) TCGA-DU-6392-01 15 52242105 52242105 G A LEO1 Silent p.S566S 0.29 TCGA-DU-6392-01 15 52357336 52357336 T C MAPK6 3'UTR 0.27 TCGA-DU-6392-01 15 52402056 52402056 G A BCL2L10 Nonsense_Mutation p.R202* 0.41 TCGA-DU-6392-01 15 52414816 52414816 C T GNB5 3'UTR 0.26 TCGA-DU-6392-01 15 52446271 52446271 G A GNB5 Missense_Mutation p.H81Y 0.65 tolerated(0.1) benign(0.301) TCGA-DU-6392-01 15 52497985 52497986 - T MYO5C Intron 0.16 TCGA-DU-6392-01 15 52539740 52539740 G T MYO5C Missense_Mutation p.P599H 0.10 tolerated(0.05) possibly_damaging(0.759) TCGA-DU-6392-01 15 52605769 52605769 A C MYO5A 3'UTR 0.25 TCGA-DU-6392-01 15 52605916 52605916 G A MYO5A Silent p.L1849L 0.09 TCGA-DU-6392-01 15 52613635 52613635 C T MYO5A Silent p.R1599R 0.43 TCGA-DU-6392-01 15 52632581 52632581 A G MYO5A Missense_Mutation p.S1351P 0.11 tolerated(0.15) possibly_damaging(0.616) TCGA-DU-6392-01 15 52671910 52671910 A - MYO5A Frame_Shift_Del p.F707Sfs*7 0.28 TCGA-DU-6392-01 15 52900776 52900776 T C FAM214A Missense_Mutation p.T779A 0.43 tolerated(0.49) benign(0.002) TCGA-DU-6392-01 15 52901017 52901017 T C FAM214A Silent p.K698K 0.08 TCGA-DU-6392-01 15 52901467 52901467 G T FAM214A Silent p.S548S 0.09 TCGA-DU-6392-01 15 53907678 53907678 A C WDR72 Missense_Mutation p.F909V 0.42 tolerated(0.88) benign(0.012) TCGA-DU-6392-01 15 53957930 53957930 G A WDR72 Nonsense_Mutation p.R601* 0.29 TCGA-DU-6392-01 15 54305610 54305610 G T UNC13C Missense_Mutation p.E170D 0.16 tolerated_low_confidence(0.06) probably_damaging(0.99) TCGA-DU-6392-01 15 54307635 54307635 T C UNC13C Silent p.S845S 0.43 TCGA-DU-6392-01 15 55652430 55652430 G A CCPG1 Missense_Mutation p.A514V 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 55912934 55912934 C T PRTG Missense_Mutation p.G1042D 0.27 deleterious(0) possibly_damaging(0.856) TCGA-DU-6392-01 15 55919209 55919209 G A PRTG Missense_Mutation p.A975V 0.42 tolerated(0.5) benign(0.075) TCGA-DU-6392-01 15 56130001 56130001 C T NEDD4 Missense_Mutation p.A1097T 0.37 tolerated(0.41) benign(0.12) TCGA-DU-6392-01 15 56134236 56134236 A G NEDD4 Silent p.D925D 0.39 TCGA-DU-6392-01 15 56385982 56385982 G T RFX7 Missense_Mutation p.S1315Y 0.37 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-DU-6392-01 15 56923983 56923983 G A ZNF280D Nonsense_Mutation p.R885* 0.29 TCGA-DU-6392-01 15 57745976 57745976 C T CGNL1 Missense_Mutation p.A717V 0.43 deleterious(0.04) possibly_damaging(0.858) TCGA-DU-6392-01 15 57924668 57924668 C T GCOM1 Nonsense_Mutation p.R239* 0.37 TCGA-DU-6392-01 15 57925929 57925929 G A GCOM1 Missense_Mutation p.R308H 0.25 tolerated(0.14) possibly_damaging(0.888) TCGA-DU-6392-01 15 58001098 58001098 G A POLR2M Silent p.Q100Q 0.41 TCGA-DU-6392-01 15 58004371 58004371 G T POLR2M Missense_Mutation p.Q316H 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 15 58430719 58430719 A C AQP9 5'UTR 0.15 TCGA-DU-6392-01 15 58889778 58889778 C A ADAM10 Nonsense_Mutation p.E739* 0.08 TCGA-DU-6392-01 15 59102556 59102556 C A FAM63B Missense_Mutation p.P364H 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 15 59179515 59179515 G T SLTM Missense_Mutation p.P867H 0.12 tolerated(0.12) probably_damaging(0.959) TCGA-DU-6392-01 15 59179566 59179566 C T SLTM Missense_Mutation p.R850Q 0.09 tolerated(0.17) benign(0.312) TCGA-DU-6392-01 15 59182557 59182557 C A SLTM Nonsense_Mutation p.E668* 0.38 TCGA-DU-6392-01 15 59185096 59185096 C A SLTM Missense_Mutation p.R633I 0.09 deleterious(0) unknown(0) TCGA-DU-6392-01 15 59384789 59384789 G T RNF111 Missense_Mutation p.E940D 0.20 tolerated(0.18) possibly_damaging(0.464) TCGA-DU-6392-01 15 59487690 59487690 G A MYO1E Missense_Mutation p.T592I 0.40 deleterious(0.03) probably_damaging(0.984) TCGA-DU-6392-01 15 59750801 59750801 G A FAM81A 5'UTR 0.15 TCGA-DU-6392-01 15 60760498 60760498 G T NARG2 Missense_Mutation p.A57D 0.38 tolerated(0.07) possibly_damaging(0.703) TCGA-DU-6392-01 15 62160096 62160096 G A VPS13C Intron 0.16 TCGA-DU-6392-01 15 62165444 62165444 C A VPS13C Splice_Site p.X3526_splice 0.35 TCGA-DU-6392-01 15 62199530 62199530 T C VPS13C Missense_Mutation p.D3013G 0.39 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 15 62199548 62199548 C T VPS13C Missense_Mutation p.R3007Q 0.37 tolerated(0.06) benign(0.316) TCGA-DU-6392-01 15 62201256 62201256 A G VPS13C Silent p.H2971H 0.10 TCGA-DU-6392-01 15 62238573 62238573 G A VPS13C Missense_Mutation p.T1638I 0.43 tolerated(0.18) benign(0.144) TCGA-DU-6392-01 15 62277144 62277144 C A VPS13C Nonsense_Mutation p.E545* 0.11 TCGA-DU-6392-01 15 62302756 62302756 G A VPS13C Missense_Mutation p.P309L 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 15 62316028 62316029 - T VPS13C Frame_Shift_Ins p.H156Afs*6 0.28 TCGA-DU-6392-01 15 62320617 62320617 T G VPS13C Missense_Mutation p.T130P 0.31 tolerated(0.09) benign(0.078) TCGA-DU-6392-01 15 62994230 62994230 C T TLN2 Missense_Mutation p.A579V 0.40 deleterious(0) probably_damaging(0.92) TCGA-DU-6392-01 15 63017291 63017291 T C TLN2 Silent p.L1081L 0.38 TCGA-DU-6392-01 15 63055879 63055879 C T TLN2 Silent p.D1693D 0.45 TCGA-DU-6392-01 15 63127961 63127961 C A TLN2 Missense_Mutation p.A2385E 0.08 tolerated(0.61) benign(0.003) TCGA-DU-6392-01 15 63354834 63354834 T G TPM1 Missense_Mutation p.D254E 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 15 63363318 63363318 C A TPM1 Missense_Mutation p.L268I 0.10 tolerated(0.4) benign(0.012) TCGA-DU-6392-01 15 63866561 63866561 G A USP3 Missense_Mutation p.R352H 0.36 deleterious(0.01) probably_damaging(0.959) TCGA-DU-6392-01 15 63880966 63880966 C T USP3 Silent p.Y427Y 0.41 TCGA-DU-6392-01 15 63904729 63904729 G T HERC1 Silent p.S4707S 0.13 TCGA-DU-6392-01 15 63922785 63922785 C T HERC1 Silent p.P4282P 0.44 TCGA-DU-6392-01 15 63928207 63928207 G A HERC1 Missense_Mutation p.R4123W 0.37 probably_damaging(0.999) TCGA-DU-6392-01 15 63944624 63944624 C T HERC1 Silent p.V3469V 0.41 TCGA-DU-6392-01 15 63946458 63946458 G A HERC1 Missense_Mutation p.R3384W 0.43 probably_damaging(0.997) TCGA-DU-6392-01 15 63948395 63948395 G A HERC1 Silent p.S3254S 0.43 TCGA-DU-6392-01 15 63956725 63956725 G A HERC1 Missense_Mutation p.A2875V 0.14 benign(0.073) TCGA-DU-6392-01 15 64231494 64231494 G T DAPK2 Missense_Mutation p.L174M 0.34 tolerated(0.05) probably_damaging(0.987) TCGA-DU-6392-01 15 64275811 64275811 G A DAPK2 Missense_Mutation p.R79W 0.46 deleterious(0) possibly_damaging(0.728) TCGA-DU-6392-01 15 64424038 64424038 T A SNX1 Missense_Mutation p.F390I 0.36 tolerated(0.06) possibly_damaging(0.878) TCGA-DU-6392-01 15 64658213 64658213 G T KIAA0101 3'UTR 0.38 TCGA-DU-6392-01 15 64687687 64687687 C A TRIP4 Missense_Mutation p.P121H 0.14 deleterious(0.01) benign(0.005) TCGA-DU-6392-01 15 64791606 64791606 C T ZNF609 5'UTR 0.36 TCGA-DU-6392-01 15 64791910 64791910 G T ZNF609 Missense_Mutation p.D98Y 0.26 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 15 64967929 64967929 C T ZNF609 Missense_Mutation p.S959L 0.09 tolerated(0.05) probably_damaging(0.999) TCGA-DU-6392-01 15 64982604 64982604 C A OAZ2 Missense_Mutation p.D108Y 0.06 deleterious(0.02) possibly_damaging(0.832) TCGA-DU-6392-01 15 65108796 65108796 G A PIF1 Missense_Mutation p.R615W 0.38 deleterious(0.02) benign(0.001) TCGA-DU-6392-01 15 65114749 65114749 G A PIF1 Missense_Mutation p.L207F 0.48 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 15 65218321 65218321 G A ANKDD1A Silent p.A141A 0.45 TCGA-DU-6392-01 15 65223741 65223741 G T ANKDD1A Missense_Mutation p.Q242H 0.45 deleterious(0.04) benign(0.078) TCGA-DU-6392-01 15 65275859 65275859 C T SPG21 Missense_Mutation p.V17I 0.44 tolerated(0.28) benign(0.065) TCGA-DU-6392-01 15 65308798 65308798 T G MTFMT Missense_Mutation p.R263S 0.29 deleterious(0.01) probably_damaging(0.969) TCGA-DU-6392-01 15 65443018 65443018 A G CLPX 3'UTR 0.43 TCGA-DU-6392-01 15 65472481 65472481 C T CLPX Silent p.Q47Q 0.29 TCGA-DU-6392-01 15 65553256 65553256 T C PARP16 Missense_Mutation p.Y267C 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 65558947 65558947 T G PARP16 Missense_Mutation p.N158H 0.34 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 15 65621802 65621802 G A IGDCC3 Missense_Mutation p.R711C 0.41 tolerated_low_confidence(0.23) benign(0.002) TCGA-DU-6392-01 15 65625621 65625621 G A IGDCC3 Missense_Mutation p.T319M 0.12 deleterious(0.01) probably_damaging(0.944) TCGA-DU-6392-01 15 65739321 65739321 G A DPP8 Silent p.S866S 0.24 TCGA-DU-6392-01 15 65759506 65759506 G T DPP8 Missense_Mutation p.P547H 0.13 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 15 65871755 65871755 T C VWA9 Silent p.E459E 0.44 TCGA-DU-6392-01 15 65871831 65871831 G A VWA9 Missense_Mutation p.T434I 0.39 deleterious(0.05) benign(0.087) TCGA-DU-6392-01 15 65959878 65959879 - A DENND4A Frame_Shift_Ins p.W1716Lfs*11 0.31 TCGA-DU-6392-01 15 66031164 66031164 C T DENND4A Silent p.P227P 0.33 TCGA-DU-6392-01 15 66190420 66190420 C T MEGF11 Missense_Mutation p.S996N 0.17 deleterious(0.04) benign(0.001) TCGA-DU-6392-01 15 66845562 66845562 C T LCTL Silent p.S319S 0.09 TCGA-DU-6392-01 15 66855883 66855883 C T LCTL Missense_Mutation p.V151M 0.36 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 15 67477152 67477152 G A SMAD3 Missense_Mutation p.C320Y 0.15 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 15 67985893 67985893 A C MAP2K5 Missense_Mutation p.N320T 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 15 68468894 68468894 C T PIAS1 Silent p.D461D 0.10 TCGA-DU-6392-01 15 68583125 68583125 C A FEM1B Missense_Mutation p.L477I 0.12 tolerated(0.13) benign(0.138) TCGA-DU-6392-01 15 69003117 69003117 C T CORO2B Missense_Mutation p.T127M 0.33 deleterious(0.03) benign(0.378) TCGA-DU-6392-01 15 69238356 69238356 G T SPESP1 Missense_Mutation p.M161I 0.43 tolerated(0.36) benign(0) TCGA-DU-6392-01 15 69329520 69329520 C T NOX5 Silent p.C447C 0.20 TCGA-DU-6392-01 15 69732275 69732275 T C KIF23 Silent p.Y582Y 0.26 TCGA-DU-6392-01 15 70347546 70347546 C T TLE3 Missense_Mutation p.A477T 0.10 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 15 70959353 70959353 C T UACA Missense_Mutation p.V1224I 0.25 tolerated(0.42) benign(0.02) TCGA-DU-6392-01 15 70960101 70960101 G A UACA Silent p.L974L 0.42 TCGA-DU-6392-01 15 70969450 70969450 G A UACA Silent p.S343S 0.42 TCGA-DU-6392-01 15 71125092 71125092 C T LARP6 Missense_Mutation p.A259T 0.35 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 15 71125303 71125303 G T LARP6 Silent p.V188V 0.15 TCGA-DU-6392-01 15 71188217 71188217 G A LRRC49 Silent p.S50S 0.49 TCGA-DU-6392-01 15 71272511 71272511 A C LRRC49 Missense_Mutation p.Q336H 0.45 deleterious(0.03) benign(0.087) TCGA-DU-6392-01 15 71341896 71341896 G A LRRC49 Missense_Mutation p.R674H 0.39 tolerated(0.08) benign(0.031) TCGA-DU-6392-01 15 71447271 71447271 G T THSD4 Missense_Mutation p.K33N 0.38 deleterious(0.01) benign(0.01) TCGA-DU-6392-01 15 71952960 71952960 C T THSD4 Missense_Mutation p.S415L 0.42 deleterious(0) possibly_damaging(0.701) TCGA-DU-6392-01 15 72063538 72063538 C T THSD4 Missense_Mutation p.P969S 0.46 tolerated(0.14) benign(0.184) TCGA-DU-6392-01 15 72105820 72105820 C T CTD-2524L6.3 5'Flank 0.41 TCGA-DU-6392-01 15 72338703 72338703 C A MYO9A Nonsense_Mutation p.E68* 0.38 TCGA-DU-6392-01 15 73029112 73029112 A C BBS4 Missense_Mutation p.M420L 0.12 tolerated(0.2) benign(0.001) TCGA-DU-6392-01 15 73052808 73052808 C T ADPGK Missense_Mutation p.V195I 0.36 tolerated(0.21) possibly_damaging(0.54) TCGA-DU-6392-01 15 73415076 73415076 G A NEO1 Missense_Mutation p.R220H 0.38 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 15 73541443 73541443 C T NEO1 Missense_Mutation p.A550V 0.36 tolerated(0.43) benign(0) TCGA-DU-6392-01 15 73567057 73567057 A G NEO1 Missense_Mutation p.N1062S 0.08 tolerated(0.11) benign(0.019) TCGA-DU-6392-01 15 73616290 73616290 C T HCN4 Missense_Mutation p.G715D 0.29 deleterious(0) unknown(0) TCGA-DU-6392-01 15 73635840 73635840 C T HCN4 Silent p.S365S 0.31 TCGA-DU-6392-01 15 73848684 73848684 G A C15orf60 Silent p.A196A 0.09 TCGA-DU-6392-01 15 73889488 73889488 C T NPTN Missense_Mutation p.R105Q 0.28 tolerated(0.34) possibly_damaging(0.494) TCGA-DU-6392-01 15 74280984 74280984 G A STOML1 Missense_Mutation p.R184W 0.44 deleterious(0.04) benign(0) TCGA-DU-6392-01 15 74290723 74290723 C T PML Missense_Mutation p.R170C 0.43 tolerated(0.05) probably_damaging(0.998) TCGA-DU-6392-01 15 74328498 74328498 G A PML Intron 0.33 TCGA-DU-6392-01 15 74337240 74337240 G T PML Missense_Mutation p.G847V 0.30 tolerated(0.08) benign(0.063) TCGA-DU-6392-01 15 74425273 74425273 G A ISLR2 Missense_Mutation p.A60T 0.10 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 15 74425567 74425567 C T ISLR2 Missense_Mutation p.R158W 0.40 deleterious(0) possibly_damaging(0.861) TCGA-DU-6392-01 15 74425584 74425584 G A ISLR2 Silent p.A163A 0.10 TCGA-DU-6392-01 15 74425650 74425650 C T ISLR2 Silent p.C185C 0.40 TCGA-DU-6392-01 15 74426914 74426914 C T ISLR2 Missense_Mutation p.P607S 0.26 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 15 74565141 74565141 C T CCDC33 Missense_Mutation p.S223F 0.37 tolerated(0.2) probably_damaging(0.919) TCGA-DU-6392-01 15 74565152 74565152 C T CCDC33 Missense_Mutation p.P227S 0.35 tolerated(0.11) probably_damaging(0.932) TCGA-DU-6392-01 15 74708206 74708206 G T SEMA7A Missense_Mutation p.L308M 0.38 deleterious(0.02) probably_damaging(0.915) TCGA-DU-6392-01 15 74748994 74748994 C T UBL7 Missense_Mutation p.R68Q 0.35 tolerated(0.31) probably_damaging(0.987) TCGA-DU-6392-01 15 74884148 74884148 C T ARID3B Silent p.N471N 0.22 TCGA-DU-6392-01 15 74911560 74911560 G A CLK3 Missense_Mutation p.R156H 0.39 tolerated_low_confidence(0.11) possibly_damaging(0.482) TCGA-DU-6392-01 15 74912538 74912538 G A CLK3 Missense_Mutation p.R262H 0.36 tolerated(0.06) possibly_damaging(0.869) TCGA-DU-6392-01 15 74914483 74914483 G A CLK3 Missense_Mutation p.R279H 0.30 deleterious(0.01) benign(0.322) TCGA-DU-6392-01 15 75014932 75014932 G A CYP1A1 Silent p.V169V 0.35 TCGA-DU-6392-01 15 75093199 75093199 G A CSK Missense_Mutation p.A220T 0.45 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 75108826 75108826 C T LMAN1L Missense_Mutation p.S130L 0.30 tolerated(0.28) benign(0.059) TCGA-DU-6392-01 15 75122677 75122677 G A CPLX3 Silent p.E153E 0.44 TCGA-DU-6392-01 15 75137365 75137365 G A SCAMP2 3'UTR 0.41 TCGA-DU-6392-01 15 75188494 75188494 G A MPI Silent p.A224A 0.46 TCGA-DU-6392-01 15 75190063 75190063 C T MPI Silent p.L422L 0.18 TCGA-DU-6392-01 15 75498424 75498424 C A C15orf39 Missense_Mutation p.P12H 0.20 deleterious(0) probably_damaging(0.95) TCGA-DU-6392-01 15 75498566 75498566 G A C15orf39 Silent p.E59E 0.27 TCGA-DU-6392-01 15 75652465 75652465 G T MAN2C1 Missense_Mutation p.L558I 0.08 tolerated(0.19) benign(0.005) TCGA-DU-6392-01 15 75761231 75761231 C A PTPN9 Missense_Mutation p.R554M 0.14 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 15 75798101 75798101 C T PTPN9 Missense_Mutation p.V295I 0.30 tolerated(0.08) benign(0.002) TCGA-DU-6392-01 15 75809691 75809691 C A PTPN9 Missense_Mutation p.R146M 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 15 75815540 75815540 C A PTPN9 Missense_Mutation p.R115M 0.43 deleterious(0.01) possibly_damaging(0.673) TCGA-DU-6392-01 15 75890978 75890978 G A SNUPN Silent p.P268P 0.35 TCGA-DU-6392-01 15 75942222 75942222 C T SNX33 Missense_Mutation p.A260V 0.09 deleterious(0.02) benign(0.001) TCGA-DU-6392-01 15 75949440 75949440 C T SNX33 Missense_Mutation p.R537C 0.44 tolerated(0.06) probably_damaging(0.91) TCGA-DU-6392-01 15 75975062 75975062 G A CSPG4 Missense_Mutation p.R1557C 0.24 tolerated(0.17) benign(0.002) TCGA-DU-6392-01 15 75982697 75982697 C T CSPG4 Missense_Mutation p.A237T 0.26 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 76165893 76165893 G T UBE2Q2 Missense_Mutation p.R191M 0.37 deleterious(0) possibly_damaging(0.598) TCGA-DU-6392-01 15 76222443 76222443 G T FBXO22 Intron 0.08 TCGA-DU-6392-01 15 76430170 76430170 C T C15orf27 Missense_Mutation p.A54V 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-6392-01 15 76580230 76580230 A G ETFA Silent p.I136I 0.35 TCGA-DU-6392-01 15 77406408 77406408 C T PEAK1 3'UTR 0.54 TCGA-DU-6392-01 15 77450859 77450859 G A PEAK1 Missense_Mutation p.T1106I 0.33 deleterious(0.04) benign(0.023) TCGA-DU-6392-01 15 77472047 77472047 G T PEAK1 Missense_Mutation p.P741H 0.40 deleterious(0) possibly_damaging(0.681) TCGA-DU-6392-01 15 77750753 77750753 G A HMG20A Missense_Mutation p.E2K 0.14 deleterious_low_confidence(0.01) benign(0.081) TCGA-DU-6392-01 15 77906437 77906437 T C LINGO1 Silent p.A604A 0.33 TCGA-DU-6392-01 15 77906905 77906905 G A LINGO1 Silent p.A448A 0.33 TCGA-DU-6392-01 15 78317661 78317661 C T TBC1D2B Silent p.L342L 0.10 TCGA-DU-6392-01 15 78390415 78390415 G A SH2D7 Missense_Mutation p.M137I 0.19 tolerated(0.05) benign(0.001) TCGA-DU-6392-01 15 78473133 78473133 G A ACSBG1 Missense_Mutation p.S406L 0.32 deleterious(0.03) probably_damaging(0.916) TCGA-DU-6392-01 15 78474911 78474911 A G ACSBG1 Missense_Mutation p.L264P 0.11 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 15 78526740 78526740 C A ACSBG1 Missense_Mutation p.R35M 0.09 tolerated_low_confidence(0.17) benign(0.031) TCGA-DU-6392-01 15 78783036 78783036 G A IREB2 Missense_Mutation p.D753N 0.34 deleterious(0) possibly_damaging(0.864) TCGA-DU-6392-01 15 78834894 78834894 C T PSMA4 Missense_Mutation p.A39V 0.37 deleterious(0) probably_damaging(0.949) TCGA-DU-6392-01 15 78882475 78882475 C T CHRNA5 Missense_Mutation p.R248C 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 78893832 78893832 G A CHRNA3 Silent p.S384S 0.39 TCGA-DU-6392-01 15 78921563 78921563 G T CHRNB4 Missense_Mutation p.P362T 0.23 tolerated(0.5) benign(0.243) TCGA-DU-6392-01 15 78923638 78923638 G T CHRNB4 Missense_Mutation p.L81M 0.45 deleterious(0.02) probably_damaging(0.986) TCGA-DU-6392-01 15 79059357 79059357 T G ADAMTS7 Missense_Mutation p.N966H 0.21 tolerated(0.11) possibly_damaging(0.617) TCGA-DU-6392-01 15 79060602 79060602 C A ADAMTS7 Splice_Site p.X840_splice 0.17 TCGA-DU-6392-01 15 79317730 79317730 G A RASGRF1 Nonsense_Mutation p.R490* 0.41 TCGA-DU-6392-01 15 79324528 79324528 G A RASGRF1 Silent p.Y363Y 0.33 TCGA-DU-6392-01 15 79339118 79339118 T C RASGRF1 Missense_Mutation p.H283R 0.36 deleterious(0) probably_damaging(0.913) TCGA-DU-6392-01 15 79382709 79382709 G A RASGRF1 Silent p.F44F 0.39 TCGA-DU-6392-01 15 79748643 79748643 T C KIAA1024 Missense_Mutation p.Y52H 0.34 tolerated(0.32) benign(0.063) TCGA-DU-6392-01 15 80181638 80181638 T C ST20-MTHFS Missense_Mutation p.Q35R 0.37 tolerated(0.37) benign(0.041) TCGA-DU-6392-01 15 80423623 80423623 G A ZFAND6 Missense_Mutation p.V156M 0.37 deleterious(0) possibly_damaging(0.883) TCGA-DU-6392-01 15 80873696 80873696 G A ARNT2 Silent p.S623S 0.35 TCGA-DU-6392-01 15 81212433 81212433 A G KIAA1199 Splice_Site p.X600_splice 0.32 TCGA-DU-6392-01 15 81234667 81234667 G A KIAA1199 Missense_Mutation p.A1230T 0.37 tolerated(0.1) benign(0.273) TCGA-DU-6392-01 15 81234672 81234672 C T KIAA1199 Silent p.Y1231Y 0.35 TCGA-DU-6392-01 15 81241091 81241091 G A KIAA1199 Intron 0.24 TCGA-DU-6392-01 15 81429027 81429027 C A C15orf26 Silent p.P110P 0.38 TCGA-DU-6392-01 15 81517878 81517878 G T IL16 Missense_Mutation p.E46D 0.30 tolerated(0.07) benign(0.099) TCGA-DU-6392-01 15 81565500 81565501 - T IL16 Frame_Shift_Ins p.A251Cfs*15 0.29 TCGA-DU-6392-01 15 81593699 81593699 G T IL16 Missense_Mutation p.R1055I 0.11 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 15 82443885 82443885 G A EFTUD1 Silent p.R970R 0.40 TCGA-DU-6392-01 15 82563946 82563946 C T FAM154B Missense_Mutation p.S19L 0.47 deleterious(0) benign(0.053) TCGA-DU-6392-01 15 82574798 82574798 C T FAM154B Missense_Mutation p.L198F 0.43 tolerated(0.14) benign(0.126) TCGA-DU-6392-01 15 83215914 83215914 T G CPEB1 Missense_Mutation p.K491N 0.46 deleterious(0) possibly_damaging(0.777) TCGA-DU-6392-01 15 83296072 83296072 G A CPEB1 Missense_Mutation p.A21V 0.33 tolerated_low_confidence(0.27) benign(0.009) TCGA-DU-6392-01 15 83725176 83725176 G T BTBD1 Missense_Mutation p.L175I 0.26 deleterious(0.05) probably_damaging(0.974) TCGA-DU-6392-01 15 83784642 83784642 G A TM6SF1 Missense_Mutation p.G81E 0.34 deleterious(0) benign(0.358) TCGA-DU-6392-01 15 83931981 83931981 C T BNC1 Silent p.L674L 0.18 TCGA-DU-6392-01 15 84442351 84442351 G A ADAMTSL3 Missense_Mutation p.R89Q 0.46 deleterious(0) probably_damaging(0.979) TCGA-DU-6392-01 15 84581936 84581936 C T ADAMTSL3 Missense_Mutation p.T598M 0.11 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 15 84657498 84657498 C T ADAMTSL3 Nonsense_Mutation p.Q1258* 0.10 TCGA-DU-6392-01 15 84706505 84706505 T G ADAMTSL3 Missense_Mutation p.C1675G 0.08 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 15 85230935 85230935 G A SEC11A Nonsense_Mutation p.R78* 0.44 TCGA-DU-6392-01 15 85341659 85341659 G A ZNF592 Missense_Mutation p.C897Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 85342424 85342424 G T ZNF592 Missense_Mutation p.K1040N 0.18 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 85382937 85382937 C T ALPK3 Nonsense_Mutation p.R345* 0.35 TCGA-DU-6392-01 15 85400565 85400565 A G ALPK3 Missense_Mutation p.T1068A 0.19 tolerated_low_confidence(0.09) benign(0.01) TCGA-DU-6392-01 15 85406145 85406145 A G ALPK3 Missense_Mutation p.Q1672R 0.15 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 15 85478633 85478633 C A SLC28A1 Missense_Mutation p.L489M 0.33 deleterious(0.04) probably_damaging(1) TCGA-DU-6392-01 15 85681118 85681118 G A PDE8A Missense_Mutation p.R825Q 0.47 tolerated_low_confidence(0.08) probably_damaging(0.994) TCGA-DU-6392-01 15 86077162 86077163 - T AKAP13 Intron 0.52 TCGA-DU-6392-01 15 86087014 86087014 C T AKAP13 Nonsense_Mutation p.R164* 0.30 TCGA-DU-6392-01 15 86123477 86123477 G T AKAP13 Missense_Mutation p.Q726H 0.47 deleterious_low_confidence(0.05) benign(0.412) TCGA-DU-6392-01 15 86124819 86124819 G A AKAP13 Missense_Mutation p.A1174T 0.37 tolerated_low_confidence(0.39) benign(0.002) TCGA-DU-6392-01 15 86125208 86125208 C A AKAP13 Missense_Mutation p.F1303L 0.41 tolerated_low_confidence(0.67) benign(0.013) TCGA-DU-6392-01 15 86288017 86288017 C T AKAP13 3'UTR 0.47 TCGA-DU-6392-01 15 88472533 88472533 G T NTRK3 Missense_Mutation p.H674Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 88678612 88678612 C T NTRK3 Silent p.V308V 0.31 TCGA-DU-6392-01 15 89008934 89008934 T G MRPL46 Missense_Mutation p.K100T 0.10 deleterious(0) benign(0.217) TCGA-DU-6392-01 15 89400981 89400981 C A ACAN Missense_Mutation p.S1722Y 0.38 tolerated(1) probably_damaging(0.961) TCGA-DU-6392-01 15 89402488 89402488 G T ACAN Missense_Mutation p.Q2224H 0.13 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 15 89442660 89442660 C T MFGE8 Missense_Mutation p.R377H 0.38 deleterious(0.03) benign(0.306) TCGA-DU-6392-01 15 89659564 89659564 T C ABHD2 Silent p.N2N 0.28 TCGA-DU-6392-01 15 89719101 89719101 C A ABHD2 Silent p.T199T 0.36 TCGA-DU-6392-01 15 89719110 89719110 C T ABHD2 Silent p.V202V 0.48 TCGA-DU-6392-01 15 89736483 89736483 G A ABHD2 Missense_Mutation p.M338I 0.11 tolerated(0.57) benign(0.001) TCGA-DU-6392-01 15 89804856 89804856 A G FANCI Missense_Mutation p.N110S 0.06 tolerated(0.68) benign(0.008) TCGA-DU-6392-01 15 89865974 89865974 T C POLG Missense_Mutation p.S809G 0.05 tolerated(0.24) probably_damaging(0.988) TCGA-DU-6392-01 15 89871701 89871701 C T POLG Silent p.P412P 0.36 TCGA-DU-6392-01 15 90185592 90185592 G A KIF7 Missense_Mutation p.R746W 0.33 deleterious(0.01) possibly_damaging(0.582) TCGA-DU-6392-01 15 90278765 90278765 T A WDR93 Missense_Mutation p.V530D 0.08 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 15 90328653 90328653 G A ANPEP Missense_Mutation p.T944M 0.46 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 15 90347138 90347138 C T ANPEP Silent p.A425A 0.22 TCGA-DU-6392-01 15 90349357 90349357 G A ANPEP Missense_Mutation p.T153I 0.28 deleterious(0.04) benign(0.098) TCGA-DU-6392-01 15 90610756 90610756 C T ZNF710 Silent p.D129D 0.50 TCGA-DU-6392-01 15 90611596 90611596 C T ZNF710 Silent p.C409C 0.35 TCGA-DU-6392-01 15 90770825 90770825 G T SEMA4B Missense_Mutation p.K575N 0.32 tolerated(0.4) benign(0.004) TCGA-DU-6392-01 15 90785152 90785152 C T GDPGP1 Missense_Mutation p.H338Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 15 90815098 90815098 C A NGRN 3'UTR 0.40 TCGA-DU-6392-01 15 90934099 90934099 C T IQGAP1 Missense_Mutation p.A50V 0.36 deleterious(0.01) probably_damaging(0.92) TCGA-DU-6392-01 15 90972822 90972822 C T IQGAP1 Missense_Mutation p.A105V 0.31 tolerated(0.15) benign(0.01) TCGA-DU-6392-01 15 90996049 90996049 G A IQGAP1 Missense_Mutation p.G402D 0.35 deleterious(0.03) benign(0.067) TCGA-DU-6392-01 15 91025201 91025201 C A IQGAP1 Silent p.P1113P 0.14 TCGA-DU-6392-01 15 91025491 91025491 C T IQGAP1 Missense_Mutation p.A1178V 0.26 deleterious(0.02) benign(0.163) TCGA-DU-6392-01 15 91027504 91027504 G A IQGAP1 Missense_Mutation p.V1281M 0.23 tolerated(0.71) benign(0.01) TCGA-DU-6392-01 15 91030306 91030306 G A IQGAP1 Missense_Mutation p.R1382Q 0.29 tolerated(0.41) benign(0.012) TCGA-DU-6392-01 15 91043373 91043373 G T IQGAP1 3'UTR 0.32 TCGA-DU-6392-01 15 91136970 91136970 G T CRTC3 Missense_Mutation p.D112Y 0.28 deleterious(0) possibly_damaging(0.839) TCGA-DU-6392-01 15 91290665 91290665 C T BLM Missense_Mutation p.R15C 0.35 deleterious(0.02) probably_damaging(0.939) TCGA-DU-6392-01 15 91424521 91424521 G A FURIN Missense_Mutation p.E600K 0.13 tolerated(0.83) benign(0.003) TCGA-DU-6392-01 15 91436526 91436526 G A FES Missense_Mutation p.D643N 0.43 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 15 91437250 91437250 A G FES Missense_Mutation p.N763S 0.29 tolerated(0.41) benign(0.001) TCGA-DU-6392-01 15 91453772 91453772 G A MAN2A2 Missense_Mutation p.R540H 0.35 tolerated(0.16) benign(0.344) TCGA-DU-6392-01 15 91491397 91491397 G A UNC45A Missense_Mutation p.A541T 0.31 tolerated(0.69) benign(0.002) TCGA-DU-6392-01 15 91551163 91551163 C T VPS33B Silent p.L145L 0.40 TCGA-DU-6392-01 15 91801681 91801681 A C SV2B Missense_Mutation p.H272P 0.11 deleterious(0.02) possibly_damaging(0.633) TCGA-DU-6392-01 15 91809856 91809856 G T SV2B Missense_Mutation p.E351D 0.10 tolerated(0.1) benign(0.046) TCGA-DU-6392-01 15 92647619 92647619 C T SLCO3A1 Missense_Mutation p.P286S 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 15 92988138 92988138 G A ST8SIA2 Missense_Mutation p.R274H 0.28 possibly_damaging(0.581) TCGA-DU-6392-01 15 93007423 93007423 C T ST8SIA2 Silent p.L312L 0.39 TCGA-DU-6392-01 15 93007444 93007444 G A ST8SIA2 Silent p.P319P 0.30 TCGA-DU-6392-01 15 93467605 93467605 T C CHD2 Silent p.S39S 0.11 TCGA-DU-6392-01 15 93534732 93534732 G A CHD2 Missense_Mutation p.G1147D 0.26 deleterious(0.01) probably_damaging(0.964) TCGA-DU-6392-01 15 93595313 93595313 G A RGMA Silent p.G193G 0.38 TCGA-DU-6392-01 15 94841867 94841867 G A MCTP2 Missense_Mutation p.A125T 0.40 tolerated(0.58) benign(0.001) TCGA-DU-6392-01 15 94901828 94901828 G T MCTP2 Nonsense_Mutation p.E430* 0.10 TCGA-DU-6392-01 15 94942270 94942270 G A MCTP2 Silent p.E623E 0.36 TCGA-DU-6392-01 15 96877635 96877635 C T NR2F2 Missense_Mutation p.A258V 0.39 deleterious(0) probably_damaging(0.951) TCGA-DU-6392-01 15 98514380 98514380 A G ARRDC4 Missense_Mutation p.D407G 0.32 tolerated(0.08) benign(0.07) TCGA-DU-6392-01 15 99467760 99467760 C T IGF1R Nonsense_Mutation p.R877* 0.35 TCGA-DU-6392-01 15 99670344 99670344 G A SYNM Silent p.P592P 0.47 TCGA-DU-6392-01 15 99671904 99671904 G T SYNM Missense_Mutation p.Q1112H 0.25 tolerated(0.14) benign(0.222) TCGA-DU-6392-01 15 99672460 99672460 G A SYNM Missense_Mutation p.E1298K 0.34 tolerated(0.13) benign(0.007) TCGA-DU-6392-01 15 99672813 99672813 C T SYNM Silent p.H1415H 0.40 TCGA-DU-6392-01 15 99678325 99678325 T C TTC23 Missense_Mutation p.K412E 0.37 tolerated(1) benign(0) TCGA-DU-6392-01 15 99696369 99696369 C T TTC23 Missense_Mutation p.R376H 0.29 tolerated(1) benign(0) TCGA-DU-6392-01 15 99762037 99762037 G A TTC23 Silent p.C71C 0.45 TCGA-DU-6392-01 16 10626797 10626797 C T EMP2 Missense_Mutation p.G157S 0.09 tolerated(0.35) benign(0.42) TCGA-DU-6392-01 16 10641447 10641447 C T EMP2 Missense_Mutation p.A10T 0.33 tolerated(0.08) benign(0.196) TCGA-DU-6392-01 16 10641526 10641526 C T EMP2 5'UTR 0.30 TCGA-DU-6392-01 16 10721459 10721459 C T TEKT5 Missense_Mutation p.R480H 0.33 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 16 10775890 10775890 A T TEKT5 Missense_Mutation p.C275S 0.43 tolerated(0.3) benign(0.006) TCGA-DU-6392-01 16 108627 108627 G T RHBDF1 Silent p.T760T 0.11 TCGA-DU-6392-01 16 11066886 11066886 C T CLEC16A Silent p.I232I 0.55 TCGA-DU-6392-01 16 111407 111407 C A RHBDF1 Missense_Mutation p.E457D 0.25 tolerated(0.18) possibly_damaging(0.489) TCGA-DU-6392-01 16 111894 111894 C T RHBDF1 Silent p.P370P 0.30 TCGA-DU-6392-01 16 11219841 11219841 C A CLEC16A Missense_Mutation p.L827M 0.09 deleterious(0) possibly_damaging(0.905) TCGA-DU-6392-01 16 1129991 1129991 G A SSTR5 3'UTR 0.58 TCGA-DU-6392-01 16 11769944 11769944 C T SNN Missense_Mutation p.T10M 0.41 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DU-6392-01 16 11770176 11770176 C T SNN Silent p.H87H 0.41 TCGA-DU-6392-01 16 11785171 11785171 C T TXNDC11 Silent p.K625K 0.40 TCGA-DU-6392-01 16 11846564 11846564 T C ZC3H7A Missense_Mutation p.Q896R 0.43 tolerated(0.17) probably_damaging(0.997) TCGA-DU-6392-01 16 11981501 11981501 G T GSPT1 Missense_Mutation p.L295I 0.08 deleterious(0.04) possibly_damaging(0.73) TCGA-DU-6392-01 16 12061576 12061576 T C TNFRSF17 Missense_Mutation p.C143R 0.21 tolerated(0.09) benign(0.065) TCGA-DU-6392-01 16 1250550 1250550 C T CACNA1H Silent p.Y366Y 0.62 TCGA-DU-6392-01 16 1260937 1260937 G A CACNA1H Missense_Mutation p.V1397M 0.45 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 1262039 1262039 G A CACNA1H Missense_Mutation p.V1554M 0.46 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 1266973 1266973 C A CACNA1H Silent p.I1762I 0.50 TCGA-DU-6392-01 16 133123 133123 C T MPG Missense_Mutation p.P130S 0.40 tolerated(0.44) benign(0.316) TCGA-DU-6392-01 16 1370528 1370528 A G UBE2I Intron 0.37 TCGA-DU-6392-01 16 1397954 1397954 C T BAIAP3 Missense_Mutation p.R1064C 0.07 deleterious(0) possibly_damaging(0.849) TCGA-DU-6392-01 16 14029554 14029554 C T ERCC4 Missense_Mutation p.R589W 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 1411752 1411752 C T GNPTG Missense_Mutation p.H63Y 0.53 tolerated(0.05) possibly_damaging(0.489) TCGA-DU-6392-01 16 1412896 1412896 C T GNPTG Missense_Mutation p.T271M 0.40 tolerated_low_confidence(0.1) benign(0.029) TCGA-DU-6392-01 16 14307467 14307467 C T MKL2 Silent p.H114H 0.33 TCGA-DU-6392-01 16 14334460 14334460 C A MKL2 Intron 0.29 TCGA-DU-6392-01 16 14341010 14341010 C T MKL2 Silent p.H631H 0.33 TCGA-DU-6392-01 16 14342792 14342792 C T MKL2 Nonsense_Mutation p.Q703* 0.28 TCGA-DU-6392-01 16 14354843 14354843 C T MKL2 Missense_Mutation p.P898S 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 16 14743744 14743744 G A BFAR Silent p.A184A 0.43 TCGA-DU-6392-01 16 14761613 14761613 T C BFAR Missense_Mutation p.Y428H 0.43 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 14962439 14962439 T C NOMO1 Missense_Mutation p.V614A 0.05 deleterious(0.01) probably_damaging(0.917) TCGA-DU-6392-01 16 14989594 14989594 C T NOMO1 3'UTR 0.16 TCGA-DU-6392-01 16 1504419 1504419 G A CLCN7 Silent p.G382G 0.32 TCGA-DU-6392-01 16 15100279 15100279 G A PDXDC1 Missense_Mutation p.E140K 0.14 deleterious(0.04) benign(0.055) TCGA-DU-6392-01 16 15155554 15155554 G A RRN3 3'UTR 0.36 TCGA-DU-6392-01 16 1537523 1537523 T C PTX4 Missense_Mutation p.E192G 0.50 tolerated(0.33) benign(0.002) TCGA-DU-6392-01 16 1537618 1537618 G A PTX4 Silent p.G160G 0.26 TCGA-DU-6392-01 16 1561125 1561125 C T IFT140 Silent p.R1403R 0.17 TCGA-DU-6392-01 16 15680614 15680614 G A C16orf45 Silent p.K181K 0.33 TCGA-DU-6392-01 16 1570040 1570040 A G IFT140 Silent p.I1294I 0.35 TCGA-DU-6392-01 16 1574550 1574550 T C IFT140 Intron 0.12 TCGA-DU-6392-01 16 15814801 15814801 T G MYH11 Missense_Mutation p.K1569N 0.29 probably_damaging(0.999) TCGA-DU-6392-01 16 15814828 15814828 G A MYH11 Silent p.D1560D 0.30 TCGA-DU-6392-01 16 1584372 1584372 C T TMEM204 Silent p.C32C 0.53 TCGA-DU-6392-01 16 1605042 1605042 C T TMEM204 3'UTR 0.35 TCGA-DU-6392-01 16 16101790 16101790 T C ABCC1 Missense_Mutation p.Y56H 0.36 tolerated(0.17) benign(0.048) TCGA-DU-6392-01 16 16146596 16146596 G A ABCC1 Missense_Mutation p.V466I 0.46 tolerated(0.12) benign(0.176) TCGA-DU-6392-01 16 16215931 16215931 G A ABCC1 Missense_Mutation p.V1164I 0.42 tolerated(0.06) benign(0.127) TCGA-DU-6392-01 16 16225792 16225792 G T ABCC1 Missense_Mutation p.K1322N 0.39 deleterious(0) benign(0.082) TCGA-DU-6392-01 16 1630804 1630804 C T IFT140 Missense_Mutation p.V494I 0.19 tolerated(0.57) benign(0.012) TCGA-DU-6392-01 16 16315535 16315535 G A ABCC6 Missense_Mutation p.R64W 0.28 deleterious(0.01) possibly_damaging(0.696) TCGA-DU-6392-01 16 16359019 16359019 T C NOMO3 Missense_Mutation p.S597P 0.27 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 1710039 1710039 G A CRAMP1L Silent p.P796P 0.54 TCGA-DU-6392-01 16 1797132 1797132 G A MAPK8IP3 Missense_Mutation p.A283T 0.38 tolerated(0.18) benign(0.056) TCGA-DU-6392-01 16 1812999 1812999 C A MAPK8IP3 Missense_Mutation p.F629L 0.09 tolerated(1) benign(0.003) TCGA-DU-6392-01 16 1827157 1827157 C T SPSB3 Missense_Mutation p.A337T 0.51 tolerated_low_confidence(0.65) benign(0.001) TCGA-DU-6392-01 16 1837967 1837967 G A NUBP2 Missense_Mutation p.R172H 0.41 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 16 18602499 18602499 C T ABCC6P1 RNA 0.31 TCGA-DU-6392-01 16 18804394 18804394 G A ARL6IP1 3'UTR 0.67 TCGA-DU-6392-01 16 18907499 18907499 T C SMG1 Missense_Mutation p.E96G 0.44 deleterious_low_confidence(0.02) benign(0.15) TCGA-DU-6392-01 16 19049260 19049260 G A TMC7 Missense_Mutation p.R357H 0.50 tolerated(0.26) possibly_damaging(0.721) TCGA-DU-6392-01 16 19056286 19056286 C T TMC7 Missense_Mutation p.T473I 0.42 tolerated(0.12) benign(0.015) TCGA-DU-6392-01 16 19126751 19126751 C T ITPRIPL2 Missense_Mutation p.A323V 0.37 deleterious(0.01) probably_damaging(0.939) TCGA-DU-6392-01 16 19194972 19194972 G A SYT17 Missense_Mutation p.D152N 0.44 tolerated(0.13) benign(0.002) TCGA-DU-6392-01 16 19195193 19195193 G A SYT17 Silent p.A225A 0.45 TCGA-DU-6392-01 16 19195376 19195376 C T SYT17 Silent p.R286R 0.37 TCGA-DU-6392-01 16 19492748 19492748 G T TMC5 Missense_Mutation p.R775M 0.29 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 16 19543863 19543863 T C CCP110 Silent p.V89V 0.08 TCGA-DU-6392-01 16 19548728 19548728 C T CCP110 Silent p.N579N 0.08 TCGA-DU-6392-01 16 19725574 19725574 G T KNOP1 Missense_Mutation p.P262T 0.10 tolerated(0.39) benign(0.229) TCGA-DU-6392-01 16 1991332 1991332 G A MSRB1 Missense_Mutation p.P44S 0.19 deleterious(0.05) possibly_damaging(0.721) TCGA-DU-6392-01 16 20043451 20043451 G A GPR139 Missense_Mutation p.T223M 0.42 tolerated(0.12) probably_damaging(0.966) TCGA-DU-6392-01 16 20043467 20043467 G T GPR139 Missense_Mutation p.L218I 0.36 tolerated(0.2) probably_damaging(0.994) TCGA-DU-6392-01 16 2026095 2026095 C T TBL3 Missense_Mutation p.L390F 0.34 tolerated(0.08) benign(0.119) TCGA-DU-6392-01 16 2027420 2027420 C A TBL3 Missense_Mutation p.L579M 0.36 deleterious(0.01) possibly_damaging(0.803) TCGA-DU-6392-01 16 20410477 20410477 G A PDILT Missense_Mutation p.T49M 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-DU-6392-01 16 2048278 2048278 G A ZNF598 Silent p.D890D 0.21 TCGA-DU-6392-01 16 2049731 2049731 G A ZNF598 Missense_Mutation p.P607S 0.39 benign(0.076) TCGA-DU-6392-01 16 2051688 2051688 G A ZNF598 Silent p.G303G 0.39 TCGA-DU-6392-01 16 20681161 20681161 C A ACSM1 Missense_Mutation p.K300N 0.08 tolerated(0.23) benign(0.081) TCGA-DU-6392-01 16 20702396 20702396 T C ACSM1 Missense_Mutation p.R39G 0.07 tolerated(0.3) benign(0.28) TCGA-DU-6392-01 16 20781367 20781367 G A ACSM3 Missense_Mutation p.R4H 0.42 tolerated_low_confidence(0.07) benign(0) TCGA-DU-6392-01 16 20838466 20838466 C A AC004381.6 Missense_Mutation p.P303H 0.07 tolerated(0.46) benign(0.135) TCGA-DU-6392-01 16 2087922 2087922 A G SLC9A3R2 Silent p.R317R 0.41 TCGA-DU-6392-01 16 2093650 2093650 G A NTHL1 Silent p.A209A 0.27 TCGA-DU-6392-01 16 2094713 2094713 G A NTHL1 Missense_Mutation p.A156V 0.33 tolerated(0.19) benign(0.094) TCGA-DU-6392-01 16 20975279 20975279 C T DNAH3 Silent p.S3309S 0.36 TCGA-DU-6392-01 16 20975574 20975574 G A DNAH3 Missense_Mutation p.A3211V 0.25 deleterious(0) possibly_damaging(0.864) TCGA-DU-6392-01 16 20996860 20996860 C T DNAH3 Missense_Mutation p.A2402T 0.35 tolerated(1) benign(0.07) TCGA-DU-6392-01 16 21045299 21045299 C T DNAH3 Missense_Mutation p.A1732T 0.48 tolerated(0.14) benign(0.001) TCGA-DU-6392-01 16 2105475 2105475 A G TSC2 Missense_Mutation p.K185R 0.32 deleterious(0.01) possibly_damaging(0.558) TCGA-DU-6392-01 16 21061301 21061301 G T DNAH3 Missense_Mutation p.A1426D 0.35 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 16 21080884 21080884 T C DNAH3 Missense_Mutation p.D1078G 0.24 deleterious(0.01) benign(0.032) TCGA-DU-6392-01 16 21210953 21210953 C T ZP2 Missense_Mutation p.R622Q 0.45 tolerated(0.91) benign(0.01) TCGA-DU-6392-01 16 2125816 2125816 G A TSC2 Silent p.P854P 0.44 TCGA-DU-6392-01 16 2140213 2140213 G A PKD1 Intron 0.32 TCGA-DU-6392-01 16 2140444 2140444 A G PKD1 Missense_Mutation p.W4096R 0.39 probably_damaging(0.992) TCGA-DU-6392-01 16 2153324 2153324 C T PKD1 Missense_Mutation p.D2912N 0.33 benign(0.003) TCGA-DU-6392-01 16 2153459 2153459 C T PKD1 Missense_Mutation p.A2867T 0.25 benign(0.065) TCGA-DU-6392-01 16 21655643 21655643 C T IGSF6 Missense_Mutation p.G168S 0.24 tolerated(0.18) benign(0.096) TCGA-DU-6392-01 16 21698948 21698948 G A OTOA Missense_Mutation p.R205H 0.37 tolerated(0.25) benign(0.003) TCGA-DU-6392-01 16 21726405 21726405 C A OTOA Missense_Mutation p.L474M 0.06 tolerated(0.11) benign(0.292) TCGA-DU-6392-01 16 21742191 21742191 G T OTOA Missense_Mutation p.K747N 0.83 tolerated(0.06) possibly_damaging(0.667) TCGA-DU-6392-01 16 22000097 22000097 C T PDZD9 Missense_Mutation p.S16N 0.19 deleterious(0.04) possibly_damaging(0.864) TCGA-DU-6392-01 16 22134955 22134955 C T VWA3A Missense_Mutation p.R487W 0.36 deleterious(0.01) possibly_damaging(0.836) TCGA-DU-6392-01 16 22142596 22142596 T G VWA3A Missense_Mutation p.W575G 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 2229990 2229990 G A CASKIN1 Missense_Mutation p.R1127C 0.27 probably_damaging(0.985) TCGA-DU-6392-01 16 22327981 22327981 G T POLR3E Missense_Mutation p.E234D 0.08 tolerated(0.36) benign(0.012) TCGA-DU-6392-01 16 223532 223532 C T HBA2 Missense_Mutation p.A121V 0.19 deleterious(0.03) benign(0.004) TCGA-DU-6392-01 16 2258454 2258454 C T MLST8 Silent p.L234L 0.36 TCGA-DU-6392-01 16 2258919 2258919 C T MLST8 3'UTR 0.39 TCGA-DU-6392-01 16 2260576 2260576 C T BRICD5 Missense_Mutation p.A43T 0.43 tolerated(0.35) benign(0.001) TCGA-DU-6392-01 16 2285119 2285119 A G E4F1 Missense_Mutation p.E658G 0.12 deleterious(0.04) possibly_damaging(0.694) TCGA-DU-6392-01 16 2289943 2289943 G A ECI1 3'UTR 0.44 TCGA-DU-6392-01 16 2293178 2293178 C T ECI1 Missense_Mutation p.R204H 0.16 tolerated(0.4) benign(0.044) TCGA-DU-6392-01 16 23113642 23113642 C A USP31 Missense_Mutation p.R411I 0.08 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 16 2333211 2333211 G A ABCA3 Silent p.C1337C 0.47 TCGA-DU-6392-01 16 23379247 23379247 G A SCNN1B Missense_Mutation p.A283T 0.35 tolerated(0.35) benign(0.068) TCGA-DU-6392-01 16 23400310 23400310 T C COG7 Silent p.R748R 0.30 TCGA-DU-6392-01 16 23404666 23404666 G A COG7 Silent p.I630I 0.39 TCGA-DU-6392-01 16 23428437 23428437 A G COG7 Silent p.H381H 0.09 TCGA-DU-6392-01 16 2348503 2348503 C T ABCA3 Missense_Mutation p.G594R 0.33 deleterious(0.01) probably_damaging(0.967) TCGA-DU-6392-01 16 23546566 23546566 G T EARS2 Missense_Mutation p.L201M 0.08 tolerated(0.08) possibly_damaging(0.802) TCGA-DU-6392-01 16 23556017 23556017 C T EARS2 Silent p.P101P 0.42 TCGA-DU-6392-01 16 23646617 23646617 G A PALB2 Missense_Mutation p.S417F 0.51 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 23646985 23646985 T A PALB2 Missense_Mutation p.K294N 0.07 deleterious(0.05) possibly_damaging(0.471) TCGA-DU-6392-01 16 23654310 23654310 T C DCTN5 Missense_Mutation p.L28S 0.10 deleterious(0) probably_damaging(0.955) TCGA-DU-6392-01 16 2367363 2367363 G T ABCA3 Silent p.S344S 0.11 TCGA-DU-6392-01 16 23690654 23690654 G A PLK1 Missense_Mutation p.R134H 0.30 tolerated(0.05) possibly_damaging(0.747) TCGA-DU-6392-01 16 2369603 2369603 C A ABCA3 Missense_Mutation p.Q284H 0.33 tolerated(0.58) benign(0.005) TCGA-DU-6392-01 16 23702503 23702503 G A ERN2 Missense_Mutation p.R887W 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 2373437 2373437 T C ABCA3 Intron 0.49 TCGA-DU-6392-01 16 23767169 23767169 C T CHP2 Missense_Mutation p.R48C 0.36 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 16 24373214 24373214 G A CACNG3 3'UTR 0.24 TCGA-DU-6392-01 16 24551887 24551887 A T RBBP6 5'UTR 0.29 TCGA-DU-6392-01 16 24567681 24567681 G T RBBP6 Missense_Mutation p.R196I 0.39 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-DU-6392-01 16 24578499 24578499 C A RBBP6 Nonsense_Mutation p.S542* 0.36 TCGA-DU-6392-01 16 24581121 24581121 C A RBBP6 Missense_Mutation p.P1037H 0.47 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 16 24801111 24801111 C A TNRC6A Missense_Mutation p.P383H 0.14 deleterious(0) possibly_damaging(0.822) TCGA-DU-6392-01 16 24815620 24815620 C T TNRC6A Missense_Mutation p.R1273C 0.23 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 16 24888627 24888627 G A SLC5A11 Missense_Mutation p.D176N 0.45 tolerated(1) benign(0.074) TCGA-DU-6392-01 16 24922937 24922937 G A SLC5A11 3'UTR 0.20 TCGA-DU-6392-01 16 24942135 24942135 T C ARHGAP17 Missense_Mutation p.T829A 0.09 tolerated_low_confidence(0.99) benign(0) TCGA-DU-6392-01 16 2498892 2498892 C T CCNF Silent p.A377A 0.46 TCGA-DU-6392-01 16 25143737 25143737 G A LCMT1 Missense_Mutation p.V74I 0.08 deleterious(0.04) possibly_damaging(0.816) TCGA-DU-6392-01 16 25180518 25180518 A C LCMT1 Missense_Mutation p.K259T 0.08 tolerated(0.19) benign(0.004) TCGA-DU-6392-01 16 2523469 2523469 G A NTN3 Missense_Mutation p.R453H 0.36 tolerated(0.12) probably_damaging(0.994) TCGA-DU-6392-01 16 25255310 25255311 - G ZKSCAN2 Frame_Shift_Ins p.S593Qfs*18 0.29 TCGA-DU-6392-01 16 25258112 25258112 C A ZKSCAN2 Missense_Mutation p.D469Y 0.10 deleterious(0) benign(0.423) TCGA-DU-6392-01 16 25258460 25258460 C T ZKSCAN2 Missense_Mutation p.A353T 0.35 deleterious(0.02) benign(0.172) TCGA-DU-6392-01 16 25263243 25263243 G A ZKSCAN2 Silent p.N264N 0.40 TCGA-DU-6392-01 16 2547099 2547099 C T RP11-20I23.1 Missense_Mutation p.T317I 0.11 deleterious(0.04) possibly_damaging(0.749) TCGA-DU-6392-01 16 2569642 2569642 G A ATP6V0C Missense_Mutation p.A122T 0.39 tolerated(0.09) probably_damaging(0.974) TCGA-DU-6392-01 16 2580303 2580303 C T AMDHD2 Missense_Mutation p.A443V 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-DU-6392-01 16 27268844 27268844 C T NSMCE1 Silent p.R16R 0.46 TCGA-DU-6392-01 16 27460361 27460361 C T IL21R Silent p.D458D 0.27 TCGA-DU-6392-01 16 27508992 27508992 G A GTF3C1 Silent p.G772G 0.29 TCGA-DU-6392-01 16 27510034 27510034 C T GTF3C1 Silent p.P694P 0.37 TCGA-DU-6392-01 16 27518325 27518325 C T GTF3C1 Silent p.S465S 0.43 TCGA-DU-6392-01 16 27518347 27518347 A G GTF3C1 Missense_Mutation p.L458P 0.12 tolerated(0.19) probably_damaging(0.992) TCGA-DU-6392-01 16 27544670 27544670 A C GTF3C1 Missense_Mutation p.V264G 0.14 tolerated(0.64) benign(0.001) TCGA-DU-6392-01 16 27751589 27751589 C T KIAA0556 Silent p.L657L 0.12 TCGA-DU-6392-01 16 27789064 27789064 G A KIAA0556 Missense_Mutation p.R1562H 0.40 deleterious(0.04) benign(0.003) TCGA-DU-6392-01 16 28117818 28117818 T A XPO6 Missense_Mutation p.D833V 0.11 deleterious(0) possibly_damaging(0.497) TCGA-DU-6392-01 16 2812116 2812116 G T SRRM2 Missense_Mutation p.Q529H 0.42 unknown(0) TCGA-DU-6392-01 16 28123322 28123322 C A XPO6 Missense_Mutation p.Q719H 0.30 tolerated(0.15) benign(0.022) TCGA-DU-6392-01 16 2812622 2812622 G A SRRM2 Missense_Mutation p.R698K 0.13 unknown(0) TCGA-DU-6392-01 16 2814399 2814399 G T SRRM2 Missense_Mutation p.Q1290H 0.10 unknown(0) TCGA-DU-6392-01 16 2814401 2814401 C T SRRM2 Missense_Mutation p.A1291V 0.32 unknown(0) TCGA-DU-6392-01 16 28187242 28187242 C T XPO6 Missense_Mutation p.D128N 0.45 tolerated(0.05) possibly_damaging(0.544) TCGA-DU-6392-01 16 2821295 2821295 C A SRRM2 3'UTR 0.36 TCGA-DU-6392-01 16 28328853 28328853 C T SBK1 Silent p.S47S 0.47 TCGA-DU-6392-01 16 28493460 28493460 C T CLN3 Missense_Mutation p.R341H 0.54 tolerated(0.4) benign(0.003) TCGA-DU-6392-01 16 28507307 28507307 C T APOBR Silent p.G315G 0.59 TCGA-DU-6392-01 16 28596240 28596240 C T CCDC101 Missense_Mutation p.R28C 0.30 deleterious(0.04) benign(0.062) TCGA-DU-6392-01 16 28604833 28604833 G A SULT1A2 Silent p.Y143Y 0.31 TCGA-DU-6392-01 16 28844586 28844586 G A ATXN2L Silent p.E622E 0.29 TCGA-DU-6392-01 16 28846456 28846456 C A ATXN2L Silent p.S837S 0.28 TCGA-DU-6392-01 16 28855565 28855565 C T TUFM Missense_Mutation p.R303H 0.43 deleterious(0) possibly_damaging(0.527) TCGA-DU-6392-01 16 28883304 28883304 G T SH2B1 Missense_Mutation p.G505W 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 28925758 28925758 G A RABEP2 Silent p.S231S 0.37 TCGA-DU-6392-01 16 28925767 28925767 G A RABEP2 Silent p.C228C 0.39 TCGA-DU-6392-01 16 28990543 28990543 C T SPNS1 Missense_Mutation p.A171V 0.30 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 16 28994535 28994535 G A SPNS1 Missense_Mutation p.R415H 0.36 deleterious(0.04) probably_damaging(0.982) TCGA-DU-6392-01 16 28995229 28995229 C T SPNS1 Silent p.T481T 0.40 TCGA-DU-6392-01 16 28997063 28997063 T C LAT Splice_Site p.X79_splice 0.42 TCGA-DU-6392-01 16 29096055 29096055 G A RRN3P2 RNA 0.23 TCGA-DU-6392-01 16 29675059 29675059 C T SPN Missense_Mutation p.L4F 0.41 tolerated(0.31) unknown(0) TCGA-DU-6392-01 16 29676225 29676225 C T SPN Silent p.P392P 0.17 TCGA-DU-6392-01 16 29706140 29706140 C T QPRT Nonsense_Mutation p.Q57* 0.42 TCGA-DU-6392-01 16 29810712 29810712 C A KIF22 Missense_Mutation p.A296D 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 29814854 29814854 C A KIF22 Missense_Mutation p.L512I 0.42 tolerated(0.25) benign(0.046) TCGA-DU-6392-01 16 29831064 29831064 C T PAGR1 Missense_Mutation p.R252W 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 2998752 2998752 G A FLYWCH1 3'UTR 0.44 TCGA-DU-6392-01 16 29989643 29989643 G A TAOK2 Missense_Mutation p.R92Q 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.801) TCGA-DU-6392-01 16 29994972 29994972 G A TAOK2 Missense_Mutation p.R470Q 0.49 deleterious(0) probably_damaging(0.97) TCGA-DU-6392-01 16 29998656 29998656 C A TAOK2 Silent p.A1021A 0.12 TCGA-DU-6392-01 16 30004867 30004867 G A HIRIP3 Silent p.L474L 0.35 TCGA-DU-6392-01 16 30005816 30005816 G T HIRIP3 Missense_Mutation p.T217N 0.41 deleterious(0.01) benign(0.124) TCGA-DU-6392-01 16 30096138 30096138 G A PPP4C Silent p.T252T 0.37 TCGA-DU-6392-01 16 30097613 30097613 C T TBX6 Missense_Mutation p.G415D 0.46 deleterious_low_confidence(0.01) benign(0.255) TCGA-DU-6392-01 16 30128550 30128550 G A MAPK3 Nonsense_Mutation p.R278* 0.23 TCGA-DU-6392-01 16 3021868 3021868 C T PAQR4 Silent p.S247S 0.08 TCGA-DU-6392-01 16 3024032 3024032 G A PKMYT1 Missense_Mutation p.L427F 0.48 tolerated(0.34) benign(0.006) TCGA-DU-6392-01 16 30364965 30364965 G A CD2BP2 Silent p.L178L 0.35 TCGA-DU-6392-01 16 30370615 30370615 C T TBC1D10B Missense_Mutation p.R507H 0.73 deleterious(0.03) possibly_damaging(0.49) TCGA-DU-6392-01 16 30409126 30409126 C A ZNF48 Silent p.I185I 0.23 TCGA-DU-6392-01 16 30490414 30490414 C A ITGAL Silent p.A110A 0.15 TCGA-DU-6392-01 16 30536215 30536215 G T ZNF768 Missense_Mutation p.L416I 0.12 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-DU-6392-01 16 30567320 30567320 G A ZNF764 Missense_Mutation p.S141L 0.39 tolerated(0.55) benign(0.003) TCGA-DU-6392-01 16 30594701 30594701 G A ZNF785 Missense_Mutation p.A133V 0.41 tolerated(0.25) benign(0.023) TCGA-DU-6392-01 16 3065336 3065336 G T CLDN6 3'UTR 0.10 TCGA-DU-6392-01 16 30665636 30665636 G T PRR14 Missense_Mutation p.D212Y 0.36 deleterious_low_confidence(0) possibly_damaging(0.576) TCGA-DU-6392-01 16 30666150 30666150 G A PRR14 Missense_Mutation p.A287T 0.48 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 30666273 30666273 C A PRR14 Missense_Mutation p.L328M 0.24 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 30722093 30722093 G A SRCAP Missense_Mutation p.A385T 0.50 unknown(0) TCGA-DU-6392-01 16 30735405 30735405 G A SRCAP Missense_Mutation p.A1554T 0.39 possibly_damaging(0.483) TCGA-DU-6392-01 16 3075782 3075782 T C THOC6 Missense_Mutation p.F38S 0.40 deleterious(0) possibly_damaging(0.709) TCGA-DU-6392-01 16 3075971 3075971 C A THOC6 Missense_Mutation p.P68T 0.11 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 16 30770336 30770336 G A C16orf93 Missense_Mutation p.P272S 0.48 tolerated(0.26) benign(0.034) TCGA-DU-6392-01 16 30776312 30776312 C T RNF40 Missense_Mutation p.R235C 0.23 tolerated(0.07) benign(0.006) TCGA-DU-6392-01 16 30780680 30780680 G T RNF40 Missense_Mutation p.K807N 0.09 deleterious(0) possibly_damaging(0.846) TCGA-DU-6392-01 16 30794144 30794144 A G ZNF629 Missense_Mutation p.I502T 0.51 tolerated(0.11) possibly_damaging(0.655) TCGA-DU-6392-01 16 30939842 30939842 C A FBXL19 Missense_Mutation p.L248I 0.12 tolerated(0.49) benign(0.364) TCGA-DU-6392-01 16 3097548 3097548 G A MMP25 Missense_Mutation p.D78N 0.37 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 16 30976233 30976233 G T SETD1A Missense_Mutation p.E390D 0.29 benign(0.001) TCGA-DU-6392-01 16 30977389 30977389 G A SETD1A Silent p.P729P 0.39 TCGA-DU-6392-01 16 3100124 3100124 A G MMP25 Missense_Mutation p.K116R 0.14 tolerated(0.14) benign(0.023) TCGA-DU-6392-01 16 31049324 31049324 C T STX4 Silent p.N152N 0.25 TCGA-DU-6392-01 16 31072279 31072279 C A ZNF668 3'UTR 0.25 TCGA-DU-6392-01 16 31072355 31072355 G A ZNF668 3'UTR 0.42 TCGA-DU-6392-01 16 31072886 31072886 G T ZNF668 Missense_Mutation p.P478T 0.12 tolerated(0.47) benign(0.017) TCGA-DU-6392-01 16 31075731 31075731 C T ZNF668 Missense_Mutation p.R40H 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-DU-6392-01 16 31075764 31075764 G A ZNF668 Missense_Mutation p.A29V 0.47 tolerated_low_confidence(0.66) benign(0.017) TCGA-DU-6392-01 16 31089168 31089168 G A ZNF646 Missense_Mutation p.R508H 0.28 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 16 31089462 31089462 G A ZNF646 Missense_Mutation p.R606K 0.33 tolerated(0.22) benign(0.081) TCGA-DU-6392-01 16 31090101 31090101 C T ZNF646 Missense_Mutation p.A819V 0.27 tolerated(0.63) benign(0.001) TCGA-DU-6392-01 16 31122664 31122664 G T BCKDK Missense_Mutation p.D297Y 0.29 deleterious(0.04) probably_damaging(0.949) TCGA-DU-6392-01 16 31123215 31123215 G A BCKDK Missense_Mutation p.A321T 0.39 deleterious(0.01) benign(0.196) TCGA-DU-6392-01 16 31131666 31131666 G A KAT8 Missense_Mutation p.R98Q 0.31 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 16 31141659 31141659 C T KAT8 Silent p.Y328Y 0.30 TCGA-DU-6392-01 16 3115644 3115644 C A IL32 5'UTR 0.42 TCGA-DU-6392-01 16 31199645 31199645 G T FUS Splice_Site p.X267_splice 0.38 TCGA-DU-6392-01 16 31213042 31213042 G A PYCARD Missense_Mutation p.A151V 0.45 deleterious(0.02) benign(0.061) TCGA-DU-6392-01 16 31213521 31213521 G A PYCARD Missense_Mutation p.S93F 0.39 deleterious(0.03) benign(0.243) TCGA-DU-6392-01 16 31332801 31332801 A G ITGAM Missense_Mutation p.R620G 0.06 tolerated(0.18) possibly_damaging(0.687) TCGA-DU-6392-01 16 31367254 31367254 G A ITGAX Silent p.E26E 0.43 TCGA-DU-6392-01 16 3139434 3139434 G A ZSCAN10 Silent p.C612C 0.49 TCGA-DU-6392-01 16 31473784 31473784 G A ARMC5 Missense_Mutation p.A306T 0.60 deleterious(0.01) possibly_damaging(0.898) TCGA-DU-6392-01 16 31487396 31487396 G A TGFB1I1 Missense_Mutation p.A260T 0.52 tolerated(0.05) benign(0.002) TCGA-DU-6392-01 16 31539887 31539887 G A AHSP Missense_Mutation p.E62K 0.39 deleterious(0) benign(0.132) TCGA-DU-6392-01 16 3165279 3165279 G A ZNF205 Intron 0.48 TCGA-DU-6392-01 16 3187371 3187371 G T ZNF213 Missense_Mutation p.Q30H 0.22 deleterious(0.01) benign(0.025) TCGA-DU-6392-01 16 3190967 3190967 G A ZNF213 Silent p.A333A 0.36 TCGA-DU-6392-01 16 3191053 3191053 G A ZNF213 Missense_Mutation p.R362H 0.37 tolerated(0.17) benign(0.092) TCGA-DU-6392-01 16 320571 320571 C T RGS11 Missense_Mutation p.R386H 0.50 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 16 3254318 3254318 G T OR1F1 Missense_Mutation p.Q24H 0.11 deleterious(0.01) probably_damaging(0.95) TCGA-DU-6392-01 16 3273916 3273916 G T ZNF200 Silent p.A388A 0.08 TCGA-DU-6392-01 16 3274160 3274160 G T ZNF200 Missense_Mutation p.P307H 0.17 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 3434792 3434792 G A ZSCAN32 Missense_Mutation p.R89W 0.35 tolerated(0.11) possibly_damaging(0.677) TCGA-DU-6392-01 16 343713 343713 G A AXIN1 Missense_Mutation p.S654L 0.44 tolerated(0.07) possibly_damaging(0.627) TCGA-DU-6392-01 16 3558334 3558334 G A CLUAP1 Missense_Mutation p.A89T 0.26 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 16 3592765 3592765 T C NLRC3 Missense_Mutation p.N1030D 0.31 deleterious(0.02) possibly_damaging(0.651) TCGA-DU-6392-01 16 3614600 3614600 C T NLRC3 Missense_Mutation p.R160H 0.37 deleterious(0) benign(0.114) TCGA-DU-6392-01 16 3632419 3632419 G T SLX4 Missense_Mutation p.T1810N 0.07 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 16 3639670 3639670 T C SLX4 Silent p.S1323S 0.14 TCGA-DU-6392-01 16 3645675 3645675 G A SLX4 Silent p.G648G 0.15 TCGA-DU-6392-01 16 3706173 3706173 C A DNASE1 Missense_Mutation p.L103M 0.35 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 16 3777623 3777623 G A CREBBP 3'UTR 0.41 TCGA-DU-6392-01 16 3781930 3781930 C A CREBBP Missense_Mutation p.Q1579H 0.10 unknown(0) TCGA-DU-6392-01 16 3786041 3786041 G T CREBBP Missense_Mutation p.T1575N 0.13 unknown(0) TCGA-DU-6392-01 16 3788664 3788664 G A CREBBP Silent p.Y1430Y 0.50 TCGA-DU-6392-01 16 3817888 3817888 C T CREBBP Missense_Mutation p.G1028E 0.35 unknown(0) TCGA-DU-6392-01 16 3843551 3843551 C T CREBBP Missense_Mutation p.R351H 0.43 probably_damaging(0.997) TCGA-DU-6392-01 16 3929833 3929833 C A CREBBP Missense_Mutation p.D29Y 0.50 possibly_damaging(0.465) TCGA-DU-6392-01 16 4027578 4027578 G A ADCY9 Silent p.N911N 0.50 TCGA-DU-6392-01 16 4029158 4029158 C T ADCY9 Missense_Mutation p.V880I 0.30 tolerated(0.13) benign(0.06) TCGA-DU-6392-01 16 4029188 4029188 C T ADCY9 Missense_Mutation p.A870T 0.34 deleterious(0.02) benign(0.178) TCGA-DU-6392-01 16 4163952 4163952 C T ADCY9 Missense_Mutation p.G498S 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 422017 422017 G A TMEM8A Silent p.N762N 0.10 TCGA-DU-6392-01 16 426671 426671 G A TMEM8A Silent p.T259T 0.73 TCGA-DU-6392-01 16 427115 427115 G A TMEM8A Missense_Mutation p.T186M 0.46 tolerated(0.34) benign(0.003) TCGA-DU-6392-01 16 4322672 4322672 C A TFAP4 Nonsense_Mutation p.G26* 0.23 TCGA-DU-6392-01 16 4393218 4393218 C T PAM16 Silent p.Q26Q 0.33 TCGA-DU-6392-01 16 4409612 4409612 G A CORO7 Missense_Mutation p.R707C 0.43 deleterious(0) benign(0.315) TCGA-DU-6392-01 16 4412704 4412704 C T CORO7 Silent p.S437S 0.50 TCGA-DU-6392-01 16 4493049 4493049 G A DNAJA3 Missense_Mutation p.R272H 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 455024 455024 G A DECR2 Missense_Mutation p.R50Q 0.32 tolerated(0.07) probably_damaging(0.99) TCGA-DU-6392-01 16 461021 461021 C T DECR2 Silent p.R202R 0.33 TCGA-DU-6392-01 16 46744668 46744668 T G MYLK3 Silent p.T716T 0.26 TCGA-DU-6392-01 16 46771675 46771675 C A MYLK3 Missense_Mutation p.G317W 0.10 deleterious(0.03) possibly_damaging(0.887) TCGA-DU-6392-01 16 46771765 46771765 C A MYLK3 Nonsense_Mutation p.G287* 0.10 TCGA-DU-6392-01 16 46836914 46836914 C T C16orf87 Missense_Mutation p.A139T 0.43 tolerated(0.14) possibly_damaging(0.821) TCGA-DU-6392-01 16 46990751 46990751 G A DNAJA2 3'UTR 0.62 TCGA-DU-6392-01 16 47271908 47271908 G T ITFG1 Missense_Mutation p.L448M 0.33 deleterious(0.01) possibly_damaging(0.808) TCGA-DU-6392-01 16 4745007 4745007 G A NUDT16L1 Missense_Mutation p.G155R 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 47497819 47497819 C T PHKB Intron 0.38 TCGA-DU-6392-01 16 4794893 4794893 C T C16orf71 Silent p.H308H 0.31 TCGA-DU-6392-01 16 48120658 48120658 T C ABCC12 Silent p.R1236R 0.10 TCGA-DU-6392-01 16 48120675 48120675 C A ABCC12 Nonsense_Mutation p.E1231* 0.31 TCGA-DU-6392-01 16 48130758 48130758 G A ABCC12 Missense_Mutation p.L1032F 0.37 deleterious(0.04) probably_damaging(0.983) TCGA-DU-6392-01 16 48141301 48141301 G A ABCC12 Missense_Mutation p.L803F 0.37 tolerated(0.28) benign(0.012) TCGA-DU-6392-01 16 48201211 48201211 C T ABCC11 Missense_Mutation p.A1375T 0.37 tolerated(0.1) benign(0.14) TCGA-DU-6392-01 16 48258282 48258282 G A ABCC11 Missense_Mutation p.L152F 0.24 tolerated(0.7) benign(0.001) TCGA-DU-6392-01 16 48396193 48396193 T C SIAH1 Silent p.L80L 0.12 TCGA-DU-6392-01 16 48594665 48594665 G A N4BP1 Missense_Mutation p.T630I 0.36 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 16 48596022 48596022 A G N4BP1 Silent p.L178L 0.30 TCGA-DU-6392-01 16 48596356 48596356 C A N4BP1 Splice_Site p.X67_splice 0.25 TCGA-DU-6392-01 16 4909942 4909942 C T UBN1 Missense_Mutation p.S215L 0.29 tolerated(0.24) possibly_damaging(0.736) TCGA-DU-6392-01 16 4925419 4925419 C T UBN1 Missense_Mutation p.S1003L 0.36 tolerated(0.09) benign(0.154) TCGA-DU-6392-01 16 4933512 4933512 G T PPL Missense_Mutation p.S1715Y 0.45 deleterious(0) probably_damaging(0.968) TCGA-DU-6392-01 16 4934269 4934269 G A PPL Nonsense_Mutation p.R1463* 0.08 TCGA-DU-6392-01 16 49525159 49525159 C T ZNF423 3'UTR 0.26 TCGA-DU-6392-01 16 49559304 49559304 C T ZNF423 Missense_Mutation p.G1227S 0.33 tolerated(0.32) benign(0.069) TCGA-DU-6392-01 16 50112928 50112928 C T HEATR3 Missense_Mutation p.P347L 0.28 deleterious(0) possibly_damaging(0.866) TCGA-DU-6392-01 16 50245298 50245298 C T PAPD5 Missense_Mutation p.R220W 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 50250053 50250053 C T PAPD5 Missense_Mutation p.R278W 0.33 tolerated(0.05) benign(0.151) TCGA-DU-6392-01 16 50257163 50257163 C T PAPD5 Nonsense_Mutation p.R401* 0.36 TCGA-DU-6392-01 16 5046882 5046882 G A SEC14L5 Silent p.R269R 0.46 TCGA-DU-6392-01 16 50707891 50707891 G A SNX20 Missense_Mutation p.A126V 0.08 tolerated(0.14) benign(0.166) TCGA-DU-6392-01 16 50750562 50750562 G A NOD2 Missense_Mutation p.E843K 0.34 tolerated(0.75) benign(0.158) TCGA-DU-6392-01 16 50750880 50750880 A G NOD2 Silent p.A875A 0.08 TCGA-DU-6392-01 16 5078081 5078081 G A NAGPA Silent p.D342D 0.24 TCGA-DU-6392-01 16 50785659 50785659 G A CYLD Missense_Mutation p.A217T 0.36 tolerated(0.08) possibly_damaging(0.52) TCGA-DU-6392-01 16 50813864 50813864 C T CYLD Missense_Mutation p.A476V 0.41 tolerated(1) possibly_damaging(0.487) TCGA-DU-6392-01 16 50828334 50828334 G A CYLD Missense_Mutation p.R894Q 0.36 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 16 5121837 5121837 G A ALG1 5'UTR 0.43 TCGA-DU-6392-01 16 53272404 53272404 G A CHD9 Missense_Mutation p.R928H 0.35 benign(0.067) TCGA-DU-6392-01 16 53279639 53279639 C T CHD9 Missense_Mutation p.R1111W 0.31 probably_damaging(1) TCGA-DU-6392-01 16 53472995 53472995 G A RBL2 Missense_Mutation p.S103N 0.36 deleterious(0.01) possibly_damaging(0.83) TCGA-DU-6392-01 16 53496517 53496517 G A RBL2 Missense_Mutation p.E504K 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 53532473 53532473 G A AKTIP Silent p.D26D 0.44 TCGA-DU-6392-01 16 53691517 53691517 G T RPGRIP1L Missense_Mutation p.L477I 0.32 deleterious(0.01) possibly_damaging(0.758) TCGA-DU-6392-01 16 54967551 54967551 G A IRX5 Silent p.A406A 0.19 TCGA-DU-6392-01 16 54967891 54967891 C T IRX5 3'UTR 0.67 TCGA-DU-6392-01 16 55566747 55566747 C T LPCAT2 Missense_Mutation p.P239S 0.27 deleterious(0.01) possibly_damaging(0.897) TCGA-DU-6392-01 16 55584911 55584911 C T LPCAT2 Missense_Mutation p.A371V 0.45 deleterious(0.02) probably_damaging(0.978) TCGA-DU-6392-01 16 55601250 55601250 C T CAPNS2 Silent p.V194V 0.45 TCGA-DU-6392-01 16 55601375 55601375 T C CAPNS2 Missense_Mutation p.V236A 0.07 deleterious(0) possibly_damaging(0.643) TCGA-DU-6392-01 16 55860116 55860116 G A CES1 Missense_Mutation p.L118F 0.33 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 16 55905558 55905558 G A CES5A Silent p.A161A 0.09 TCGA-DU-6392-01 16 55907780 55907780 C T CES5A Nonsense_Mutation p.W110* 0.41 TCGA-DU-6392-01 16 560783 560783 C T RAB11FIP3 Silent p.I541I 0.43 TCGA-DU-6392-01 16 56388803 56388803 C T RP11-441F2.5 5'Flank 0.27 TCGA-DU-6392-01 16 56423204 56423204 A G AMFR Missense_Mutation p.V390A 0.37 tolerated(0.78) benign(0) TCGA-DU-6392-01 16 56500144 56500144 A T OGFOD1 Missense_Mutation p.S177C 0.25 tolerated(0.09) benign(0.114) TCGA-DU-6392-01 16 56602768 56602768 G A MT4 Missense_Mutation p.C38Y 0.32 deleterious(0.05) possibly_damaging(0.712) TCGA-DU-6392-01 16 56642952 56642952 G A MT2A Missense_Mutation p.C26Y 0.42 deleterious(0.04) possibly_damaging(0.712) TCGA-DU-6392-01 16 56670364 56670364 G A MT1M 3'Flank 0.09 TCGA-DU-6392-01 16 56686499 56686499 C T MT1B Silent p.C15C 0.38 TCGA-DU-6392-01 16 56839423 56839423 G A NUP93 Missense_Mutation p.G123D 0.53 tolerated(0.6) benign(0.013) TCGA-DU-6392-01 16 56868649 56868649 G A NUP93 Missense_Mutation p.D581N 0.12 deleterious(0.03) benign(0.126) TCGA-DU-6392-01 16 56913136 56913136 C T SLC12A3 Silent p.Y444Y 0.26 TCGA-DU-6392-01 16 56969209 56969209 G T HERPUD1 Missense_Mutation p.R70S 0.08 deleterious(0.01) benign(0.155) TCGA-DU-6392-01 16 57012048 57012048 C T CETP Missense_Mutation p.L343F 0.34 tolerated(0.09) possibly_damaging(0.519) TCGA-DU-6392-01 16 570584 570584 C T RAB11FIP3 Silent p.S714S 0.48 TCGA-DU-6392-01 16 57092917 57092917 C A NLRC5 Silent p.A1288A 0.39 TCGA-DU-6392-01 16 57113497 57113497 C T NLRC5 Silent p.L1759L 0.10 TCGA-DU-6392-01 16 57144795 57144795 C A CPNE2 Missense_Mutation p.F47L 0.20 tolerated(1) benign(0.004) TCGA-DU-6392-01 16 57238868 57238868 G A RSPRY1 Missense_Mutation p.V100M 0.38 deleterious(0) possibly_damaging(0.758) TCGA-DU-6392-01 16 57247814 57247814 G T RSPRY1 Missense_Mutation p.G220C 0.10 deleterious(0.02) benign(0.007) TCGA-DU-6392-01 16 57254721 57254721 G A RSPRY1 Missense_Mutation p.V327I 0.37 deleterious(0.01) possibly_damaging(0.528) TCGA-DU-6392-01 16 57255217 57255217 C T RSPRY1 Missense_Mutation p.R351C 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-DU-6392-01 16 57272840 57272840 C T RSPRY1 Missense_Mutation p.R562C 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 57503104 57503104 G A POLR2C Missense_Mutation p.E96K 0.42 tolerated(0.16) benign(0.06) TCGA-DU-6392-01 16 57504908 57504908 C A POLR2C Silent p.S235S 0.31 TCGA-DU-6392-01 16 57507814 57507814 C T DOK4 Missense_Mutation p.R246K 0.24 deleterious_low_confidence(0.04) benign(0.011) TCGA-DU-6392-01 16 57509501 57509501 G A DOK4 Missense_Mutation p.T69M 0.38 deleterious(0.04) possibly_damaging(0.509) TCGA-DU-6392-01 16 57550268 57550268 C A CCDC102A Missense_Mutation p.E452D 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 16 57693391 57693391 C T GPR56 Silent p.D457D 0.22 TCGA-DU-6392-01 16 57717923 57717923 C A GPR97 Missense_Mutation p.L321M 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 16 57741392 57741392 G A CCDC135 Silent p.P293P 0.35 TCGA-DU-6392-01 16 57752284 57752284 C A CCDC135 Missense_Mutation p.P368H 0.35 deleterious(0.04) probably_damaging(0.914) TCGA-DU-6392-01 16 57787077 57787077 C T KATNB1 Missense_Mutation p.P315L 0.35 tolerated(0.5) benign(0) TCGA-DU-6392-01 16 57790311 57790311 C T KATNB1 Missense_Mutation p.R588W 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 16 57799471 57799471 A C KIFC3 Missense_Mutation p.F471C 0.78 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 16 57937774 57937774 G A CNGB1 Missense_Mutation p.R916C 0.13 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 58030938 58030938 G A ZNF319 Missense_Mutation p.S411F 0.57 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 16 58031995 58031995 C T ZNF319 Missense_Mutation p.G59S 0.38 tolerated(0.93) benign(0.001) TCGA-DU-6392-01 16 58073914 58073914 G T MMP15 Missense_Mutation p.Q192H 0.08 tolerated(0.23) benign(0.016) TCGA-DU-6392-01 16 58075737 58075737 C T MMP15 Missense_Mutation p.T376I 0.27 deleterious(0) probably_damaging(0.917) TCGA-DU-6392-01 16 58076166 58076166 G A MMP15 Missense_Mutation p.R399H 0.31 tolerated(0.06) possibly_damaging(0.884) TCGA-DU-6392-01 16 58292308 58292308 G T CCDC113 Missense_Mutation p.V143F 0.37 deleterious(0.04) benign(0.089) TCGA-DU-6392-01 16 58313629 58313629 G A CCDC113 Missense_Mutation p.R361Q 0.43 tolerated(0.74) benign(0.005) TCGA-DU-6392-01 16 58426548 58426548 C T GINS3 Missense_Mutation p.P15S 0.34 tolerated_low_confidence(0.65) benign(0.002) TCGA-DU-6392-01 16 58538058 58538058 A G NDRG4 Missense_Mutation p.H95R 0.11 tolerated(0.07) benign(0.008) TCGA-DU-6392-01 16 58538527 58538527 G A NDRG4 Missense_Mutation p.G168R 0.37 deleterious(0.02) probably_damaging(0.985) TCGA-DU-6392-01 16 58545534 58545534 G A NDRG4 3'UTR 0.28 TCGA-DU-6392-01 16 58559183 58559183 C T CNOT1 Silent p.A2228A 0.29 TCGA-DU-6392-01 16 58559985 58559985 C A CNOT1 Missense_Mutation p.V2171L 0.34 tolerated(0.22) benign(0.007) TCGA-DU-6392-01 16 58575424 58575424 A C CNOT1 Missense_Mutation p.F1594C 0.11 deleterious(0.03) possibly_damaging(0.775) TCGA-DU-6392-01 16 58576173 58576173 A G CNOT1 Missense_Mutation p.Y1548H 0.06 deleterious(0) benign(0.186) TCGA-DU-6392-01 16 58585554 58585554 G T CNOT1 Missense_Mutation p.T1047N 0.08 tolerated(0.37) benign(0.157) TCGA-DU-6392-01 16 58609021 58609021 G T CNOT1 Missense_Mutation p.L573M 0.07 deleterious(0.02) possibly_damaging(0.753) TCGA-DU-6392-01 16 58614634 58614634 G A CNOT1 Missense_Mutation p.P416S 0.41 tolerated(0.27) benign(0.259) TCGA-DU-6392-01 16 58621775 58621775 A T CNOT1 Missense_Mutation p.F73Y 0.46 tolerated(0.17) benign(0.012) TCGA-DU-6392-01 16 624613 624613 G A PIGQ Missense_Mutation p.R180H 0.20 deleterious_low_confidence(0.05) possibly_damaging(0.773) TCGA-DU-6392-01 16 633214 633214 G A PIGQ Missense_Mutation p.M621I 0.27 deleterious_low_confidence(0.01) benign(0.008) TCGA-DU-6392-01 16 65032517 65032517 C T CDH11 Silent p.P157P 0.36 TCGA-DU-6392-01 16 66436740 66436740 C T CDH5 Missense_Mutation p.R675W 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-DU-6392-01 16 66551710 66551710 C T TK2 Missense_Mutation p.V174M 0.24 deleterious(0.02) possibly_damaging(0.844) TCGA-DU-6392-01 16 66575796 66575796 C T TK2 Missense_Mutation p.A73T 0.37 tolerated(0.56) benign(0) TCGA-DU-6392-01 16 66599866 66599866 C T CKLF Silent p.S137S 0.32 TCGA-DU-6392-01 16 66657318 66657318 T G CMTM4 Missense_Mutation p.I151L 0.30 tolerated(0.12) possibly_damaging(0.895) TCGA-DU-6392-01 16 66757651 66757651 T C DYNC1LI2 Missense_Mutation p.N485D 0.22 tolerated(0.49) benign(0.079) TCGA-DU-6392-01 16 66762943 66762943 C A DYNC1LI2 Missense_Mutation p.Q367H 0.07 deleterious(0.03) probably_damaging(0.956) TCGA-DU-6392-01 16 66842453 66842453 C A NAE1 Missense_Mutation p.R434I 0.47 deleterious(0) benign(0.09) TCGA-DU-6392-01 16 66886638 66886638 C T CA7 Silent p.C180C 0.31 TCGA-DU-6392-01 16 66918675 66918675 C T PDP2 Missense_Mutation p.S163F 0.37 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 16 66956204 66956204 C T RRAD Silent p.A234A 0.32 TCGA-DU-6392-01 16 66974239 66974239 G A CES2 Missense_Mutation p.G244S 0.49 deleterious(0.02) probably_damaging(0.957) TCGA-DU-6392-01 16 66997236 66997236 C T CES3 Silent p.H79H 0.08 TCGA-DU-6392-01 16 67005218 67005218 T C CES3 Silent p.L429L 0.08 TCGA-DU-6392-01 16 67029675 67029675 C A CES4A Missense_Mutation p.P68H 0.27 deleterious(0) probably_damaging(0.939) TCGA-DU-6392-01 16 67154083 67154083 C A C16orf70 Missense_Mutation p.L45I 0.48 tolerated(0.33) benign(0.085) TCGA-DU-6392-01 16 67201093 67201093 G A HSF4 Missense_Mutation p.A233T 0.40 tolerated(0.55) benign(0.007) TCGA-DU-6392-01 16 67219349 67219349 G A EXOC3L1 Missense_Mutation p.A514V 0.31 tolerated(1) benign(0.006) TCGA-DU-6392-01 16 67264291 67264291 G A FHOD1 Nonsense_Mutation p.R993* 0.42 TCGA-DU-6392-01 16 67286472 67286472 C A SLC9A5 Missense_Mutation p.S72Y 0.12 deleterious(0.01) probably_damaging(0.936) TCGA-DU-6392-01 16 67292254 67292254 G A SLC9A5 Silent p.Q510Q 0.33 TCGA-DU-6392-01 16 67305108 67305108 C A SLC9A5 Missense_Mutation p.L896M 0.27 deleterious_low_confidence(0.01) benign(0.387) TCGA-DU-6392-01 16 67314868 67314868 G T PLEKHG4 Nonsense_Mutation p.E227* 0.09 TCGA-DU-6392-01 16 67318663 67318663 G A PLEKHG4 Silent p.E580E 0.48 TCGA-DU-6392-01 16 67322137 67322137 G A PLEKHG4 Silent p.S1096S 0.11 TCGA-DU-6392-01 16 67325309 67325309 C T KCTD19 Missense_Mutation p.C823Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 67401011 67401011 G A LRRC36 Silent p.K282K 0.43 TCGA-DU-6392-01 16 67578270 67578270 C T FAM65A Missense_Mutation p.T910M 0.26 deleterious(0) possibly_damaging(0.791) TCGA-DU-6392-01 16 67579727 67579727 C T FAM65A Silent p.L1137L 0.56 TCGA-DU-6392-01 16 67671827 67671827 C T CTCF 3'UTR 0.38 TCGA-DU-6392-01 16 67682846 67682846 C T RLTPR Silent p.G520G 0.53 TCGA-DU-6392-01 16 67690161 67690161 C A RLTPR Missense_Mutation p.P1258H 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 67691948 67691948 G A ACD Missense_Mutation p.R469W 0.54 tolerated(0.25) benign(0) TCGA-DU-6392-01 16 67692112 67692112 G T ACD Missense_Mutation p.P414H 0.47 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-DU-6392-01 16 67696030 67696030 G A PARD6A Missense_Mutation p.R174Q 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-DU-6392-01 16 677702 677702 G A RAB40C 3'UTR 0.36 TCGA-DU-6392-01 16 67805960 67805960 C T RANBP10 Missense_Mutation p.G126D 0.10 deleterious(0.04) possibly_damaging(0.666) TCGA-DU-6392-01 16 67858679 67858679 C T TSNAXIP1 Silent p.S171S 0.44 TCGA-DU-6392-01 16 67860697 67860697 T G TSNAXIP1 Missense_Mutation p.F448V 0.07 tolerated(0.1) probably_damaging(0.947) TCGA-DU-6392-01 16 67914878 67914878 G A EDC4 Missense_Mutation p.S839N 0.37 tolerated(1) benign(0.002) TCGA-DU-6392-01 16 67943504 67943504 C T PSKH1 Silent p.G284G 0.51 TCGA-DU-6392-01 16 67964672 67964672 C T CTRL Missense_Mutation p.R92Q 0.38 tolerated(0.72) benign(0.248) TCGA-DU-6392-01 16 67980444 67980444 G T SLC12A4 Silent p.I780I 0.19 TCGA-DU-6392-01 16 67983747 67983747 G A SLC12A4 Silent p.G570G 0.17 TCGA-DU-6392-01 16 67991894 67991894 G T SLC12A4 Silent p.I134I 0.35 TCGA-DU-6392-01 16 68011861 68011861 C T DPEP3 Missense_Mutation p.G271R 0.12 deleterious(0.02) probably_damaging(0.914) TCGA-DU-6392-01 16 68071995 68071995 G A DUS2 Silent p.G23G 0.34 TCGA-DU-6392-01 16 68156145 68156145 G A NFATC3 Missense_Mutation p.C120Y 0.35 tolerated(0.12) probably_damaging(0.998) TCGA-DU-6392-01 16 68225673 68225673 A G NFATC3 Missense_Mutation p.D1034G 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 16 68260387 68260387 C T NFATC3 3'UTR 0.37 TCGA-DU-6392-01 16 68266665 68266665 A G ESRP2 Missense_Mutation p.C237R 0.29 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 68293208 68293208 G A PLA2G15 Missense_Mutation p.R296H 0.49 tolerated(0.23) benign(0.009) TCGA-DU-6392-01 16 68405102 68405102 G A SMPD3 Missense_Mutation p.S328L 0.41 deleterious(0) probably_damaging(0.966) TCGA-DU-6392-01 16 68725634 68725634 G A CDH3 Missense_Mutation p.V603I 0.44 tolerated(0.43) benign(0.001) TCGA-DU-6392-01 16 68844204 68844204 G T CDH1 Missense_Mutation p.Q264H 0.28 tolerated(0.14) possibly_damaging(0.753) TCGA-DU-6392-01 16 68847221 68847221 G T CDH1 Missense_Mutation p.K381N 0.43 tolerated(0.28) benign(0.002) TCGA-DU-6392-01 16 68847244 68847244 C T CDH1 Missense_Mutation p.A389V 0.32 tolerated(1) benign(0.042) TCGA-DU-6392-01 16 68896887 68896887 T G TANGO6 Missense_Mutation p.L259V 0.25 deleterious(0) probably_damaging(0.974) TCGA-DU-6392-01 16 69143610 69143610 C T HAS3 Silent p.C104C 0.37 TCGA-DU-6392-01 16 69143877 69143877 G T HAS3 Missense_Mutation p.K193N 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 69148496 69148496 G A HAS3 Missense_Mutation p.R330Q 0.33 tolerated(0.28) benign(0.005) TCGA-DU-6392-01 16 69184788 69184788 G A CIRH1A Missense_Mutation p.R328Q 0.40 tolerated(0.07) probably_damaging(0.98) TCGA-DU-6392-01 16 69197042 69197043 - A CIRH1A Frame_Shift_Ins p.N537Kfs*16 0.13 TCGA-DU-6392-01 16 69197064 69197064 G A CIRH1A Missense_Mutation p.A544T 0.39 tolerated(0.36) benign(0.067) TCGA-DU-6392-01 16 69356569 69356569 C A VPS4A Missense_Mutation p.P393H 0.13 deleterious(0.01) possibly_damaging(0.844) TCGA-DU-6392-01 16 69400902 69400902 G A TERF2 Missense_Mutation p.P341L 0.15 deleterious(0.04) benign(0.256) TCGA-DU-6392-01 16 69727997 69727997 G A NFAT5 Missense_Mutation p.M1423I 0.42 benign(0.001) TCGA-DU-6392-01 16 69786169 69786169 G T NOB1 Missense_Mutation p.S101Y 0.21 deleterious(0.01) benign(0.212) TCGA-DU-6392-01 16 70010629 70010629 T G PDXDC2P RNA 0.12 TCGA-DU-6392-01 16 70070440 70070440 C T PDXDC2P RNA 0.30 TCGA-DU-6392-01 16 70177557 70177557 C T PDPR Missense_Mutation p.R584C 0.11 deleterious(0.01) possibly_damaging(0.81) TCGA-DU-6392-01 16 70180086 70180086 C A PDPR Silent p.S639S 0.15 TCGA-DU-6392-01 16 70187441 70187441 G T PDPR Nonsense_Mutation p.E734* 0.23 TCGA-DU-6392-01 16 70292106 70292106 C A AARS Missense_Mutation p.Q669H 0.75 deleterious(0) benign(0.179) TCGA-DU-6392-01 16 70349948 70349948 C T DDX19B Silent p.V79V 0.29 TCGA-DU-6392-01 16 70390074 70390074 A G DDX19A Missense_Mutation p.T73A 0.07 tolerated(0.15) possibly_damaging(0.557) TCGA-DU-6392-01 16 70395365 70395365 G A DDX19A Missense_Mutation p.R113Q 0.56 tolerated(0.12) benign(0.292) TCGA-DU-6392-01 16 70405961 70405961 G T DDX19A 3'UTR 0.10 TCGA-DU-6392-01 16 70416789 70416789 G A ST3GAL2 Silent p.H266H 0.33 TCGA-DU-6392-01 16 70516638 70516638 G A COG4 Silent p.I638I 0.52 TCGA-DU-6392-01 16 70572290 70572290 C T SF3B3 Missense_Mutation p.S297L 0.49 tolerated(0.08) benign(0.052) TCGA-DU-6392-01 16 70690941 70690941 G A IL34 Missense_Mutation p.D107N 0.35 tolerated(0.3) benign(0.023) TCGA-DU-6392-01 16 70694006 70694006 G A IL34 Silent p.P215P 0.43 TCGA-DU-6392-01 16 70713743 70713743 G A MTSS1L Missense_Mutation p.R110C 0.21 deleterious(0) possibly_damaging(0.718) TCGA-DU-6392-01 16 70796894 70796894 C T VAC14 Missense_Mutation p.G399R 0.10 tolerated(0.29) benign(0.041) TCGA-DU-6392-01 16 70814781 70814781 G A VAC14 Silent p.D336D 0.20 TCGA-DU-6392-01 16 70841379 70841379 G T HYDIN 3'UTR 0.12 TCGA-DU-6392-01 16 70972621 70972621 C T HYDIN Silent p.E2297E 0.33 TCGA-DU-6392-01 16 71025246 71025246 G A HYDIN Missense_Mutation p.T1280M 0.39 benign(0.231) TCGA-DU-6392-01 16 71061529 71061529 G A HYDIN Silent p.L1006L 0.32 TCGA-DU-6392-01 16 71488028 71488028 G A ZNF23 5'UTR 0.42 TCGA-DU-6392-01 16 71570688 71570688 G A CHST4 Missense_Mutation p.M36I 0.19 tolerated(0.17) benign(0) TCGA-DU-6392-01 16 716482 716482 G T WDR90 Missense_Mutation p.D1590Y 0.40 deleterious(0.05) possibly_damaging(0.751) TCGA-DU-6392-01 16 71674836 71674836 G A MARVELD3 Missense_Mutation p.R380H 0.26 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 16 71710385 71710385 C T PHLPP2 Missense_Mutation p.G479D 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 71736512 71736512 C T PHLPP2 Missense_Mutation p.R136Q 0.43 deleterious(0.02) probably_damaging(0.996) TCGA-DU-6392-01 16 71768515 71768515 C T AP1G1 Silent p.Q791Q 0.40 TCGA-DU-6392-01 16 71898054 71898054 G A ZNF821 Missense_Mutation p.A135V 0.38 deleterious(0.04) benign(0.118) TCGA-DU-6392-01 16 71949616 71949616 T C IST1 Silent p.L38L 0.36 TCGA-DU-6392-01 16 71956439 71956439 G T IST1 Missense_Mutation p.K218N 0.33 tolerated(0.18) benign(0.024) TCGA-DU-6392-01 16 71961808 71961808 C T IST1 3'UTR 0.27 TCGA-DU-6392-01 16 72046120 72046120 G A DHODH Missense_Mutation p.G65R 0.42 tolerated(0.19) benign(0.104) TCGA-DU-6392-01 16 72090136 72090136 A G HP Missense_Mutation p.I28V 0.41 tolerated_low_confidence(0.18) benign(0.007) TCGA-DU-6392-01 16 721185 721185 C T RHOT2 Missense_Mutation p.A284V 0.51 tolerated(0.19) benign(0.108) TCGA-DU-6392-01 16 72122928 72122928 G A TXNL4B Missense_Mutation p.T81I 0.37 tolerated(0.06) probably_damaging(1) TCGA-DU-6392-01 16 72130083 72130083 G A DHX38 Silent p.S9S 0.37 TCGA-DU-6392-01 16 72141254 72141254 C T DHX38 Silent p.S872S 0.37 TCGA-DU-6392-01 16 72141442 72141442 A C DHX38 Missense_Mutation p.N935T 0.25 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 16 72162984 72162984 A C PMFBP1 Missense_Mutation p.F644C 0.07 tolerated(0.19) benign(0.435) TCGA-DU-6392-01 16 72164161 72164161 G A PMFBP1 Missense_Mutation p.A578V 0.24 tolerated(0.28) benign(0.156) TCGA-DU-6392-01 16 727827 727827 G A RHBDL1 Silent p.P364P 0.27 TCGA-DU-6392-01 16 72828427 72828427 C T ZFHX3 Silent p.A2718A 0.33 TCGA-DU-6392-01 16 72832394 72832394 C T ZFHX3 Missense_Mutation p.R1396H 0.36 probably_damaging(0.991) TCGA-DU-6392-01 16 72992225 72992225 T C ZFHX3 Missense_Mutation p.E607G 0.08 possibly_damaging(0.787) TCGA-DU-6392-01 16 72992774 72992774 G T ZFHX3 Missense_Mutation p.A424D 0.37 possibly_damaging(0.686) TCGA-DU-6392-01 16 731942 731942 C T JMJD8 3'UTR 0.30 TCGA-DU-6392-01 16 732441 732441 G T STUB1 Missense_Mutation p.E288D 0.09 tolerated(0.08) benign(0.179) TCGA-DU-6392-01 16 737585 737585 G A WDR24 Silent p.C212C 0.53 TCGA-DU-6392-01 16 74372701 74372701 C A RP11-252A24.2 RNA 0.42 TCGA-DU-6392-01 16 74447532 74447532 G T CLEC18B Missense_Mutation p.L167M 0.07 tolerated(0.16) possibly_damaging(0.448) TCGA-DU-6392-01 16 74451985 74451985 C T CLEC18B Missense_Mutation p.R143H 0.29 tolerated(0.35) benign(0.002) TCGA-DU-6392-01 16 74485860 74485860 C A GLG1 3'UTR 0.22 TCGA-DU-6392-01 16 74490600 74490600 C T GLG1 Missense_Mutation p.E1107K 0.44 tolerated(0.12) benign(0.095) TCGA-DU-6392-01 16 74678318 74678318 C T RFWD3 Missense_Mutation p.V341I 0.36 tolerated(0.19) benign(0.362) TCGA-DU-6392-01 16 74719482 74719482 C A MLKL Splice_Site p.X241_splice 0.28 TCGA-DU-6392-01 16 74729471 74729471 A G MLKL Missense_Mutation p.M62T 0.24 deleterious(0.04) benign(0.002) TCGA-DU-6392-01 16 75238090 75238090 G T CTRB2 Missense_Mutation p.P254H 0.30 deleterious(0.01) probably_damaging(0.961) TCGA-DU-6392-01 16 75263741 75263741 C T BCAR1 Missense_Mutation p.A807T 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 16 75513169 75513169 C A CHST6 Silent p.P186P 0.51 TCGA-DU-6392-01 16 75573914 75573914 A G TMEM231 Missense_Mutation p.L339S 0.45 tolerated_low_confidence(0.69) benign(0.004) TCGA-DU-6392-01 16 7568364 7568364 C T RBFOX1 Silent p.S101S 0.37 TCGA-DU-6392-01 16 7568366 7568366 C T RBFOX1 Missense_Mutation p.A102V 0.38 deleterious(0.04) possibly_damaging(0.882) TCGA-DU-6392-01 16 75690558 75690558 A - TERF2IP 3'UTR 0.35 TCGA-DU-6392-01 16 76350288 76350288 G A CNTNAP4 Intron 0.38 TCGA-DU-6392-01 16 76350360 76350360 A C CNTNAP4 Missense_Mutation p.S21R 0.26 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 16 774778 774778 C T CCDC78 Missense_Mutation p.R223H 0.30 tolerated(0.23) benign(0.025) TCGA-DU-6392-01 16 77850856 77850856 A T VAT1L Missense_Mutation p.N91I 0.47 tolerated(0.5) benign(0.033) TCGA-DU-6392-01 16 78064481 78064481 G A CLEC3A Missense_Mutation p.A122T 0.33 tolerated(0.15) benign(0.024) TCGA-DU-6392-01 16 78458769 78458769 C A WWOX Missense_Mutation p.P203H 0.04 tolerated(0.68) benign(0.031) TCGA-DU-6392-01 16 78466627 78466627 C T WWOX Missense_Mutation p.A345V 0.37 tolerated(0.7) benign(0.014) TCGA-DU-6392-01 16 79633850 79633850 G T MAF 5'UTR 0.33 TCGA-DU-6392-01 16 81069745 81069745 C T ATMIN Silent p.G90G 0.56 TCGA-DU-6392-01 16 81077072 81077072 C A ATMIN Silent p.S323S 0.37 TCGA-DU-6392-01 16 81181860 81181860 C T PKD1L2 RNA 0.53 TCGA-DU-6392-01 16 81232492 81232492 T C PKD1L2 Missense_Mutation p.R440G 0.16 tolerated(0.5) benign(0) TCGA-DU-6392-01 16 81232505 81232505 G T PKD1L2 Silent p.T435T 0.08 TCGA-DU-6392-01 16 812739 812739 G T MSLN Missense_Mutation p.S20I 0.41 deleterious(0.01) possibly_damaging(0.828) TCGA-DU-6392-01 16 81388172 81388172 G A GAN Missense_Mutation p.V149I 0.22 tolerated(0.22) benign(0.162) TCGA-DU-6392-01 16 81725387 81725387 T C CMIP Missense_Mutation p.Y466H 0.35 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 16 81934302 81934302 G A PLCG2 Missense_Mutation p.D427N 0.38 tolerated(0.07) benign(0.035) TCGA-DU-6392-01 16 81954830 81954830 G A PLCG2 Missense_Mutation p.V755I 0.32 tolerated(0.26) benign(0.007) TCGA-DU-6392-01 16 830489 830489 C T MSLNL Missense_Mutation p.R171H 0.49 benign(0.001) TCGA-DU-6392-01 16 83704395 83704395 T G CDH13 Missense_Mutation p.F415V 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-DU-6392-01 16 83945881 83945881 C T MLYCD Missense_Mutation p.A286V 0.48 deleterious(0) probably_damaging(0.95) TCGA-DU-6392-01 16 83948758 83948758 C T MLYCD Silent p.S382S 0.41 TCGA-DU-6392-01 16 83948828 83948828 C A MLYCD Missense_Mutation p.L406M 0.37 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 83948953 83948953 C A MLYCD Silent p.S447S 0.11 TCGA-DU-6392-01 16 84050271 84050271 C T SLC38A8 Missense_Mutation p.A339T 0.29 tolerated(0.62) benign(0.002) TCGA-DU-6392-01 16 84065494 84065494 G A SLC38A8 Missense_Mutation p.R204C 0.07 tolerated(0.09) possibly_damaging(0.849) TCGA-DU-6392-01 16 84075744 84075744 C A SLC38A8 Nonsense_Mutation p.G7* 0.11 TCGA-DU-6392-01 16 84126863 84126863 C A MBTPS1 Missense_Mutation p.S259I 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 84163651 84163651 C T HSDL1 Silent p.T202T 0.31 TCGA-DU-6392-01 16 84228961 84228961 G A ADAD2 Missense_Mutation p.G347S 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 84270343 84270343 T A KCNG4 Missense_Mutation p.E250V 0.17 deleterious(0) possibly_damaging(0.783) TCGA-DU-6392-01 16 84444186 84444186 G A ATP2C2 Missense_Mutation p.V144M 0.30 deleterious(0) possibly_damaging(0.844) TCGA-DU-6392-01 16 84472889 84472889 G A ATP2C2 Silent p.E368E 0.46 TCGA-DU-6392-01 16 84497225 84497225 C T ATP2C2 Silent p.L910L 0.44 TCGA-DU-6392-01 16 84695193 84695193 C T KLHL36 Silent p.Y435Y 0.10 TCGA-DU-6392-01 16 84695222 84695222 T C KLHL36 Missense_Mutation p.F445S 0.08 tolerated(0.27) benign(0.075) TCGA-DU-6392-01 16 84778569 84778569 G T USP10 Missense_Mutation p.S161I 0.16 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-DU-6392-01 16 84779110 84779110 C A USP10 Silent p.S341S 0.19 TCGA-DU-6392-01 16 84872224 84872224 C T CRISPLD2 Silent p.N41N 0.28 TCGA-DU-6392-01 16 85010773 85010773 C A ZDHHC7 Missense_Mutation p.E263D 0.17 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 16 85100902 85100902 C T KIAA0513 Silent p.N75N 0.08 TCGA-DU-6392-01 16 85121920 85121920 G A KIAA0513 Missense_Mutation p.A409T 0.37 tolerated(0.61) benign(0.012) TCGA-DU-6392-01 16 85688435 85688435 G T GSE1 Missense_Mutation p.S212I 0.45 deleterious(0) unknown(0) TCGA-DU-6392-01 16 85721174 85721174 G T GINS2 Missense_Mutation p.L33M 0.12 deleterious(0.02) possibly_damaging(0.792) TCGA-DU-6392-01 16 85814835 85814835 G A EMC8 Silent p.S120S 0.27 TCGA-DU-6392-01 16 85936747 85936747 C T IRF8 Silent p.H42H 0.18 TCGA-DU-6392-01 16 85942614 85942614 G T IRF8 Missense_Mutation p.G65W 0.19 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 16 85953808 85953808 G A IRF8 Missense_Mutation p.R361H 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 16 86575410 86575410 C A MTHFSD Nonsense_Mutation p.E192* 0.34 TCGA-DU-6392-01 16 86600952 86600952 G A FOXC2 Missense_Mutation p.R4H 0.44 deleterious(0) benign(0.137) TCGA-DU-6392-01 16 86612511 86612511 C T FOXL1 Missense_Mutation p.A61V 0.46 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 8729111 8729111 C T METTL22 Silent p.A214A 0.46 TCGA-DU-6392-01 16 87367807 87367807 C T FBXO31 Missense_Mutation p.R361H 0.49 tolerated(0.12) benign(0.005) TCGA-DU-6392-01 16 87369043 87369043 C T FBXO31 Missense_Mutation p.R288H 0.30 deleterious(0.05) probably_damaging(0.999) TCGA-DU-6392-01 16 87969994 87969994 G A CA5A Silent p.A21A 0.32 TCGA-DU-6392-01 16 88066718 88066718 C T BANP Missense_Mutation p.P348L 0.21 tolerated_low_confidence(0.25) benign(0.011) TCGA-DU-6392-01 16 88598606 88598606 C T ZFPM1 Silent p.S303S 0.45 TCGA-DU-6392-01 16 88721165 88721165 G A MVD Silent p.D316D 0.10 TCGA-DU-6392-01 16 88723931 88723931 G T MVD Missense_Mutation p.L106I 0.39 tolerated(0.07) benign(0.006) TCGA-DU-6392-01 16 88725119 88725119 C T MVD Missense_Mutation p.R27H 0.33 deleterious(0) possibly_damaging(0.829) TCGA-DU-6392-01 16 88776649 88776649 G - CTU2 Frame_Shift_Del p.P83Lfs*14 0.32 TCGA-DU-6392-01 16 88901652 88901652 G A GALNS Silent p.N289N 0.35 TCGA-DU-6392-01 16 8895724 8895724 C T PMM2 Silent p.G45G 0.33 TCGA-DU-6392-01 16 88967912 88967912 G A CBFA2T3 Missense_Mutation p.H102Y 0.53 tolerated_low_confidence(0.26) benign(0.001) TCGA-DU-6392-01 16 89341503 89341503 G A ANKRD11 Missense_Mutation p.R2523W 0.21 probably_damaging(0.998) TCGA-DU-6392-01 16 89347194 89347194 G A ANKRD11 Missense_Mutation p.A1919V 0.33 probably_damaging(0.997) TCGA-DU-6392-01 16 89349882 89349882 G A ANKRD11 Missense_Mutation p.T1023I 0.47 benign(0.002) TCGA-DU-6392-01 16 89350202 89350202 G T ANKRD11 Missense_Mutation p.N916K 0.36 benign(0.164) TCGA-DU-6392-01 16 89350925 89350925 C A ANKRD11 Missense_Mutation p.E675D 0.06 benign(0.001) TCGA-DU-6392-01 16 89354940 89354940 T C ANKRD11 Missense_Mutation p.Y247C 0.37 probably_damaging(0.996) TCGA-DU-6392-01 16 89579416 89579416 C T SPG7 Missense_Mutation p.S116L 0.21 tolerated(0.12) benign(0.004) TCGA-DU-6392-01 16 89598878 89598878 C T SPG7 Silent p.G386G 0.34 TCGA-DU-6392-01 16 89619481 89619481 G A SPG7 Missense_Mutation p.R625Q 0.30 deleterious(0.03) possibly_damaging(0.538) TCGA-DU-6392-01 16 89655141 89655141 A G CPNE7 Missense_Mutation p.Y404C 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-DU-6392-01 16 89704645 89704645 G T DPEP1 3'UTR 0.55 TCGA-DU-6392-01 16 89712451 89712451 C T CHMP1A 3'UTR 0.44 TCGA-DU-6392-01 16 89763869 89763869 G A SPATA2L Missense_Mutation p.A383V 0.45 tolerated(0.19) benign(0.006) TCGA-DU-6392-01 16 89764615 89764615 G A SPATA2L Silent p.S134S 0.25 TCGA-DU-6392-01 16 89795646 89795646 C T ZNF276 Silent p.D363D 0.32 TCGA-DU-6392-01 16 89800422 89800422 C T ZNF276 Missense_Mutation p.R484C 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 16 89805197 89805197 C T FANCA Intron 0.52 TCGA-DU-6392-01 16 89816211 89816211 G A FANCA Missense_Mutation p.L1056F 0.15 deleterious(0) possibly_damaging(0.587) TCGA-DU-6392-01 16 89831452 89831452 A G FANCA Missense_Mutation p.L875S 0.36 deleterious(0.01) possibly_damaging(0.587) TCGA-DU-6392-01 16 89849305 89849305 G T FANCA Missense_Mutation p.L530I 0.08 deleterious(0) benign(0.364) TCGA-DU-6392-01 16 8988700 8988700 G A USP7 Nonsense_Mutation p.R1018* 0.41 TCGA-DU-6392-01 16 89929992 89929992 C T SPIRE2 Missense_Mutation p.L562F 0.26 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 16 89936622 89936622 G A SPIRE2 Missense_Mutation p.R696H 0.33 tolerated(0.09) probably_damaging(0.988) TCGA-DU-6392-01 16 89960234 89960234 G A TCF25 Missense_Mutation p.A266T 0.41 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 16 8998370 8998370 C A USP7 Missense_Mutation p.E542D 0.53 tolerated(0.23) benign(0.004) TCGA-DU-6392-01 16 89985956 89985956 T C MC1R Missense_Mutation p.V97A 0.09 tolerated(0.09) benign(0.304) TCGA-DU-6392-01 16 89986192 89986192 A G MC1R Missense_Mutation p.S176G 0.14 tolerated(1) benign(0.075) TCGA-DU-6392-01 16 89986634 89986634 G A MC1R 3'UTR 0.38 TCGA-DU-6392-01 16 90025579 90025579 G T DEF8 Intron 0.39 TCGA-DU-6392-01 16 90038294 90038294 G A CENPBD1 Missense_Mutation p.P13S 0.40 tolerated(0.52) benign(0.006) TCGA-DU-6392-01 16 9004625 9004625 C T USP7 Missense_Mutation p.D380N 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 16 9010900 9010901 - T USP7 Frame_Shift_Ins p.L279Vfs*12 0.24 TCGA-DU-6392-01 16 90161014 90161014 G A TUBB8P7 Intron 0.25 TCGA-DU-6392-01 16 921309 921309 G A LMF1 Silent p.F310F 0.17 TCGA-DU-6392-01 16 9857312 9857312 G A GRIN2A Silent p.S1363S 0.41 TCGA-DU-6392-01 17 10210259 10210259 C T MYH13 Silent p.T1764T 0.42 TCGA-DU-6392-01 17 10253954 10253954 T C MYH13 Missense_Mutation p.T355A 0.42 deleterious(0.02) possibly_damaging(0.825) TCGA-DU-6392-01 17 10293648 10293648 T C MYH8 3'UTR 0.42 TCGA-DU-6392-01 17 10318841 10318841 G A MYH8 Missense_Mutation p.A199V 0.43 deleterious(0) possibly_damaging(0.476) TCGA-DU-6392-01 17 10355428 10355428 C T MYH4 Missense_Mutation p.E1190K 0.49 deleterious(0.01) possibly_damaging(0.87) TCGA-DU-6392-01 17 10397683 10397683 T C MYH1 Silent p.Q1885Q 0.09 TCGA-DU-6392-01 17 10398332 10398332 C T MYH1 Silent p.V1794V 0.10 TCGA-DU-6392-01 17 10399784 10399784 A C MYH1 Missense_Mutation p.I1580S 0.11 tolerated(0.05) possibly_damaging(0.704) TCGA-DU-6392-01 17 10402092 10402092 A G MYH1 Silent p.C1344C 0.14 TCGA-DU-6392-01 17 10404994 10404994 A G MYH1 Missense_Mutation p.F1089L 0.31 tolerated(0.15) possibly_damaging(0.491) TCGA-DU-6392-01 17 10417403 10417403 C T MYH1 Missense_Mutation p.R191H 0.17 tolerated(0.09) benign(0.01) TCGA-DU-6392-01 17 10429105 10429105 G A MYH2 Missense_Mutation p.R1426W 0.48 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 17 10432210 10432210 G A MYH2 Missense_Mutation p.R1181C 0.35 deleterious(0.03) probably_damaging(0.991) TCGA-DU-6392-01 17 10451166 10451166 G A MYH2 Silent p.R24R 0.10 TCGA-DU-6392-01 17 10543493 10543493 G T MYH3 Missense_Mutation p.F834L 0.44 deleterious(0.04) benign(0.02) TCGA-DU-6392-01 17 10545871 10545871 G A MYH3 Missense_Mutation p.A584V 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-DU-6392-01 17 10590075 10590075 G T SCO1 Missense_Mutation p.P247H 0.09 deleterious(0) probably_damaging(0.957) TCGA-DU-6392-01 17 10614224 10614224 C T ADPRM Silent p.V264V 0.36 TCGA-DU-6392-01 17 11556116 11556116 C A DNAH9 Missense_Mutation p.H798N 0.33 benign(0.001) TCGA-DU-6392-01 17 11593175 11593175 C A DNAH9 Missense_Mutation p.L1346M 0.40 possibly_damaging(0.547) TCGA-DU-6392-01 17 11603079 11603079 A G DNAH9 Missense_Mutation p.N1635S 0.39 benign(0.016) TCGA-DU-6392-01 17 11790177 11790177 C T DNAH9 Silent p.N3669N 0.38 TCGA-DU-6392-01 17 11887482 11887482 C A ZNF18 Missense_Mutation p.K233N 0.40 deleterious(0.02) probably_damaging(0.99) TCGA-DU-6392-01 17 12655755 12655755 C T MYOCD Nonsense_Mutation p.R384* 0.39 TCGA-DU-6392-01 17 12823149 12823149 G A ARHGAP44 Splice_Site p.X155_splice 0.33 TCGA-DU-6392-01 17 12898155 12898155 G A ELAC2 Missense_Mutation p.A652V 0.18 deleterious(0.01) benign(0.099) TCGA-DU-6392-01 17 13399651 13399651 G A HS3ST3A1 Missense_Mutation p.H362Y 0.08 deleterious(0) probably_damaging(0.946) TCGA-DU-6392-01 17 1380798 1380798 C T MYO1C Splice_Site p.X525_splice 0.27 TCGA-DU-6392-01 17 1380819 1380819 C T MYO1C Silent p.K518K 0.53 TCGA-DU-6392-01 17 1387545 1387545 C T MYO1C Missense_Mutation p.R43H 0.28 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 1489322 1489322 C T SLC43A2 Missense_Mutation p.G368S 0.31 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 17 15215722 15215722 C T TEKT3 Missense_Mutation p.A319T 0.30 tolerated(0.47) benign(0.02) TCGA-DU-6392-01 17 15510968 15510968 C T RP11-385D13.1 Silent p.Q694Q 0.47 TCGA-DU-6392-01 17 15518967 15518967 G T RP11-385D13.1 Missense_Mutation p.S531Y 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-DU-6392-01 17 15522425 15522425 C T CDRT1 Silent p.A134A 0.38 TCGA-DU-6392-01 17 15532148 15532148 G A TRIM16 Silent p.F492F 0.36 TCGA-DU-6392-01 17 15532344 15532344 T C TRIM16 Missense_Mutation p.H427R 0.43 deleterious(0.04) benign(0.013) TCGA-DU-6392-01 17 15554452 15554452 T C RP11-385D13.1 Missense_Mutation p.S158G 0.10 deleterious_low_confidence(0.01) benign(0.185) TCGA-DU-6392-01 17 1558720 1558720 G T PRPF8 Missense_Mutation p.L1971M 0.34 deleterious(0.02) probably_damaging(0.983) TCGA-DU-6392-01 17 1561966 1561966 G A PRPF8 Missense_Mutation p.R1744C 0.37 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 15641317 15641317 C T TBC1D26 Missense_Mutation p.R69C 0.38 tolerated(0.09) benign(0.001) TCGA-DU-6392-01 17 15643436 15643436 C T TBC1D26 Missense_Mutation p.L174F 0.44 deleterious(0) possibly_damaging(0.697) TCGA-DU-6392-01 17 1578972 1578972 G T PRPF8 Silent p.P938P 0.40 TCGA-DU-6392-01 17 1578988 1578988 C T PRPF8 Missense_Mutation p.R933H 0.42 deleterious(0.01) possibly_damaging(0.902) TCGA-DU-6392-01 17 1579960 1579960 C T PRPF8 Missense_Mutation p.V743M 0.06 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 17 1584919 1584919 C T PRPF8 Missense_Mutation p.R240H 0.32 deleterious(0.03) possibly_damaging(0.901) TCGA-DU-6392-01 17 15935767 15935767 G A NCOR1 Missense_Mutation p.T2389I 0.34 probably_damaging(0.996) TCGA-DU-6392-01 17 15942850 15942850 A G NCOR1 Silent p.V2284V 0.13 TCGA-DU-6392-01 17 15942969 15942969 C A NCOR1 Splice_Site p.X2245_splice 0.13 TCGA-DU-6392-01 17 15973653 15973653 G T NCOR1 Silent p.R1447R 0.39 TCGA-DU-6392-01 17 16021243 16021243 G A NCOR1 Nonsense_Mutation p.R672* 0.11 TCGA-DU-6392-01 17 16042399 16042399 C A NCOR1 Missense_Mutation p.E425D 0.17 benign(0.298) TCGA-DU-6392-01 17 16049780 16049780 C A NCOR1 Missense_Mutation p.R331M 0.53 probably_damaging(0.998) TCGA-DU-6392-01 17 16068429 16068429 G A NCOR1 Missense_Mutation p.S161L 0.15 benign(0.007) TCGA-DU-6392-01 17 1631740 1631740 G A WDR81 Missense_Mutation p.V1163M 0.47 tolerated(0.23) possibly_damaging(0.642) TCGA-DU-6392-01 17 16335329 16335329 C T TRPV2 Silent p.G568G 0.40 TCGA-DU-6392-01 17 1634379 1634379 C A WDR81 Silent p.A1328A 0.20 TCGA-DU-6392-01 17 16347042 16347042 G T FAM211A Missense_Mutation p.L299M 0.23 tolerated(0.08) probably_damaging(0.994) TCGA-DU-6392-01 17 1636912 1636912 C A WDR81 Missense_Mutation p.N1527K 0.15 tolerated(0.37) benign(0.009) TCGA-DU-6392-01 17 16456237 16456237 G A ZNF287 Missense_Mutation p.H407Y 0.11 deleterious(0.02) probably_damaging(0.986) TCGA-DU-6392-01 17 16471055 16471055 C T ZNF287 5'UTR 0.38 TCGA-DU-6392-01 17 1657778 1657778 C A SERPINF2 Missense_Mutation p.L476I 0.33 deleterious_low_confidence(0.01) benign(0.424) TCGA-DU-6392-01 17 16691260 16691260 C T CCDC144A 3'UTR 0.26 TCGA-DU-6392-01 17 17030083 17030083 G A MPRIP Missense_Mutation p.R112H 0.12 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 17 1703452 1703452 G A SMYD4 Silent p.C412C 0.06 TCGA-DU-6392-01 17 17079821 17079821 C A MPRIP Missense_Mutation p.L931M 0.09 tolerated(0.11) possibly_damaging(0.832) TCGA-DU-6392-01 17 17119724 17119724 C T FLCN Missense_Mutation p.V424M 0.53 deleterious(0.01) possibly_damaging(0.563) TCGA-DU-6392-01 17 17124681 17124681 C T FLCN Intron 0.33 TCGA-DU-6392-01 17 17124701 17124701 A G FLCN Intron 0.23 TCGA-DU-6392-01 17 17129551 17129551 G T FLCN Missense_Mutation p.P112H 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 17250164 17250164 G A NT5M Missense_Mutation p.C197Y 0.13 tolerated(0.07) possibly_damaging(0.486) TCGA-DU-6392-01 17 1731227 1731227 G A SMYD4 Missense_Mutation p.T21M 0.38 tolerated(0.07) benign(0.011) TCGA-DU-6392-01 17 17394698 17394698 C T MED9 Silent p.S110S 0.38 TCGA-DU-6392-01 17 17399332 17399332 G T RASD1 Missense_Mutation p.P55H 0.42 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 17 1747248 1747248 C T RPA1 Missense_Mutation p.P40L 0.42 tolerated(0.07) possibly_damaging(0.457) TCGA-DU-6392-01 17 1747293 1747293 G A RPA1 Splice_Site p.X55_splice 0.12 TCGA-DU-6392-01 17 17696880 17696880 T C RAI1 Silent p.G206G 0.33 TCGA-DU-6392-01 17 17698006 17698006 G A RAI1 Missense_Mutation p.D582N 0.08 tolerated(0.13) possibly_damaging(0.734) TCGA-DU-6392-01 17 17700973 17700973 G A RAI1 Missense_Mutation p.A1571T 0.40 tolerated(0.23) benign(0.21) TCGA-DU-6392-01 17 17722350 17722350 G T SREBF1 Missense_Mutation p.L379M 0.10 tolerated(0.06) probably_damaging(0.925) TCGA-DU-6392-01 17 17751069 17751069 G T TOM1L2 Silent p.A468A 0.09 TCGA-DU-6392-01 17 17770235 17770235 G A TOM1L2 Silent p.F305F 0.17 TCGA-DU-6392-01 17 17896109 17896109 C T LRRC48 Missense_Mutation p.R159W 0.26 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 17 18022853 18022853 G A MYO15A Missense_Mutation p.D247N 0.23 probably_damaging(0.988) TCGA-DU-6392-01 17 18023596 18023596 G T MYO15A Missense_Mutation p.E494D 0.29 benign(0.001) TCGA-DU-6392-01 17 18060286 18060286 G A MYO15A Missense_Mutation p.A2874T 0.08 unknown(0) TCGA-DU-6392-01 17 18082201 18082201 C A MYO15A 3'UTR 0.50 TCGA-DU-6392-01 17 18110257 18110257 G A ALKBH5 Missense_Mutation p.R327H 0.33 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-DU-6392-01 17 18140194 18140194 C T LLGL1 Nonsense_Mutation p.Q518* 0.35 TCGA-DU-6392-01 17 18145559 18145559 G A LLGL1 Missense_Mutation p.G988R 0.37 tolerated(0.19) benign(0.001) TCGA-DU-6392-01 17 18156617 18156617 G A FLII Silent p.C337C 0.32 TCGA-DU-6392-01 17 18181375 18181375 T A TOP3A Missense_Mutation p.N814I 0.37 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 17 18194249 18194249 G A TOP3A Silent p.I458I 0.36 TCGA-DU-6392-01 17 18226218 18226218 G A SMCR8 Missense_Mutation p.R883H 0.37 tolerated(0.1) probably_damaging(0.999) TCGA-DU-6392-01 17 18233940 18233940 C T SHMT1 Missense_Mutation p.G367D 0.36 deleterious(0.02) benign(0.117) TCGA-DU-6392-01 17 18387258 18387258 G A LGALS9C Missense_Mutation p.V37I 0.80 tolerated(0.19) benign(0.091) TCGA-DU-6392-01 17 1840091 1840091 G A RTN4RL1 Missense_Mutation p.P342L 0.46 tolerated(0.31) benign(0.001) TCGA-DU-6392-01 17 1840632 1840632 C T RTN4RL1 Missense_Mutation p.E162K 0.12 tolerated(0.21) benign(0.252) TCGA-DU-6392-01 17 1840818 1840818 C T RTN4RL1 Missense_Mutation p.V100M 0.31 tolerated(0.1) possibly_damaging(0.873) TCGA-DU-6392-01 17 18539750 18539750 G A TBC1D28 3'UTR 0.40 TCGA-DU-6392-01 17 18539872 18539872 G A TBC1D28 Missense_Mutation p.A179V 0.10 tolerated(1) benign(0.124) TCGA-DU-6392-01 17 18566190 18566190 C T ZNF286B Missense_Mutation p.R210K 0.09 tolerated(0.78) benign(0.014) TCGA-DU-6392-01 17 18638383 18638383 C A TRIM16L Silent p.I219I 0.32 TCGA-DU-6392-01 17 18653282 18653282 G A FBXW10 Intron 0.30 TCGA-DU-6392-01 17 18681866 18681866 C A FBXW10 Missense_Mutation p.S805Y 0.43 tolerated(0.92) benign(0.019) TCGA-DU-6392-01 17 18682533 18682533 C A FBXW10 Silent p.I1027I 0.42 TCGA-DU-6392-01 17 18863864 18863864 G A SLC5A10 Missense_Mutation p.V118I 0.35 tolerated(0.18) possibly_damaging(0.823) TCGA-DU-6392-01 17 18874841 18874841 C T FAM83G Missense_Mutation p.R768H 0.08 tolerated(0.41) benign(0) TCGA-DU-6392-01 17 18881653 18881653 G A FAM83G Silent p.S442S 0.18 TCGA-DU-6392-01 17 18925335 18925335 C T GRAP Silent p.R197R 0.33 TCGA-DU-6392-01 17 19283924 19283924 C T MAPK7 Silent p.Y134Y 0.38 TCGA-DU-6392-01 17 19285153 19285153 C T MAPK7 Missense_Mutation p.R513C 0.50 deleterious(0) unknown(0) TCGA-DU-6392-01 17 19316255 19316255 C T RNF112 Missense_Mutation p.T129M 0.30 deleterious(0.02) possibly_damaging(0.655) TCGA-DU-6392-01 17 1945107 1945107 G T DPH1 Missense_Mutation p.D430Y 0.50 deleterious_low_confidence(0.04) benign(0.044) TCGA-DU-6392-01 17 19480755 19480755 C T SLC47A1 Silent p.G534G 0.37 TCGA-DU-6392-01 17 19610012 19610012 G T SLC47A2 Missense_Mutation p.L300I 0.28 deleterious(0.02) possibly_damaging(0.874) TCGA-DU-6392-01 17 19641390 19641390 G A ALDH3A1 3'UTR 0.56 TCGA-DU-6392-01 17 19645413 19645413 G A ALDH3A1 Missense_Mutation p.T198M 0.33 tolerated(0.13) benign(0.018) TCGA-DU-6392-01 17 19645423 19645423 T C ALDH3A1 Missense_Mutation p.I195V 0.37 tolerated(0.08) benign(0.003) TCGA-DU-6392-01 17 19708066 19708066 C T ULK2 Missense_Mutation p.R412H 0.48 deleterious(0) benign(0.315) TCGA-DU-6392-01 17 19729453 19729453 T - ULK2 Frame_Shift_Del p.K278Nfs*130 0.10 TCGA-DU-6392-01 17 19750088 19750088 C T ULK2 Missense_Mutation p.R144H 0.38 deleterious(0.04) benign(0.02) TCGA-DU-6392-01 17 20799212 20799212 G A CCDC144NL Missense_Mutation p.P41L 0.52 tolerated_low_confidence(0.31) benign(0.025) TCGA-DU-6392-01 17 20922431 20922431 C T USP22 Silent p.P162P 0.38 TCGA-DU-6392-01 17 21201737 21201737 G A MAP2K3 Missense_Mutation p.R21K 0.21 tolerated(0.52) benign(0.001) TCGA-DU-6392-01 17 21205482 21205482 A G MAP2K3 Missense_Mutation p.M143V 0.10 deleterious(0) benign(0.362) TCGA-DU-6392-01 17 21319618 21319618 C A KCNJ12 Missense_Mutation p.L322M 0.14 deleterious(0.03) possibly_damaging(0.487) TCGA-DU-6392-01 17 2203472 2203472 G A SMG6 Missense_Mutation p.A192V 0.31 tolerated_low_confidence(0.3) benign(0) TCGA-DU-6392-01 17 2222127 2222127 T C SRR Silent p.P101P 0.05 TCGA-DU-6392-01 17 2265508 2265508 G T SGSM2 Silent p.T134T 0.30 TCGA-DU-6392-01 17 2274584 2274584 C A SGSM2 Silent p.G484G 0.37 TCGA-DU-6392-01 17 2323636 2323636 G A METTL16 Silent p.G439G 0.38 TCGA-DU-6392-01 17 25639315 25639315 C T WSB1 Nonsense_Mutation p.R396* 0.37 TCGA-DU-6392-01 17 25753542 25753542 G T TBC1D3P5 RNA 0.09 TCGA-DU-6392-01 17 25758240 25758240 G A TBC1D3P5 RNA 0.57 TCGA-DU-6392-01 17 2579818 2579818 C A PAFAH1B1 Missense_Mutation p.P307H 0.37 deleterious(0.04) benign(0.012) TCGA-DU-6392-01 17 2579889 2579889 C A PAFAH1B1 Missense_Mutation p.L331I 0.09 tolerated(0.34) benign(0.14) TCGA-DU-6392-01 17 25909752 25909752 C A KSR1 Missense_Mutation p.L64I 0.34 tolerated(0.33) benign(0.001) TCGA-DU-6392-01 17 26084196 26084196 C A NOS2 3'UTR 0.38 TCGA-DU-6392-01 17 26110133 26110133 C A NOS2 Splice_Site p.X156_splice 0.29 TCGA-DU-6392-01 17 26518101 26518101 C T NLK Nonsense_Mutation p.R431* 0.34 TCGA-DU-6392-01 17 26653718 26653718 G A TMEM97 Missense_Mutation p.V144M 0.12 tolerated(0.07) benign(0.074) TCGA-DU-6392-01 17 26666704 26666704 C T TNFAIP1 Missense_Mutation p.L53F 0.33 tolerated(0.13) probably_damaging(1) TCGA-DU-6392-01 17 26668285 26668285 C A TNFAIP1 Missense_Mutation p.P133H 0.08 deleterious(0.02) probably_damaging(0.926) TCGA-DU-6392-01 17 26715466 26715466 G A SARM1 Missense_Mutation p.V577I 0.32 tolerated(1) benign(0.057) TCGA-DU-6392-01 17 26723061 26723061 C A SARM1 Intron 0.07 TCGA-DU-6392-01 17 26817589 26817589 G A SLC13A2 Missense_Mutation p.V166I 0.38 tolerated(0.23) benign(0.029) TCGA-DU-6392-01 17 26818459 26818459 T C SLC13A2 Silent p.N242N 0.40 TCGA-DU-6392-01 17 26820649 26820649 C T SLC13A2 Silent p.C362C 0.29 TCGA-DU-6392-01 17 26861379 26861379 C T FOXN1 Missense_Mutation p.R320W 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 26874428 26874428 C T UNC119 Splice_Site p.X204_splice 0.43 TCGA-DU-6392-01 17 26887149 26887149 T C PIGS Missense_Mutation p.D246G 0.38 deleterious(0.01) possibly_damaging(0.588) TCGA-DU-6392-01 17 26919664 26919664 G T SPAG5 Missense_Mutation p.H200N 0.43 deleterious_low_confidence(0.05) benign(0.006) TCGA-DU-6392-01 17 26961728 26961728 C T KIAA0100 Missense_Mutation p.M959I 0.09 tolerated(0.2) benign(0.251) TCGA-DU-6392-01 17 26962484 26962484 C T KIAA0100 Silent p.E707E 0.38 TCGA-DU-6392-01 17 27002475 27002475 C T SUPT6H Missense_Mutation p.R199W 0.30 deleterious(0) unknown(0) TCGA-DU-6392-01 17 27010091 27010091 C T SUPT6H Missense_Mutation p.P620L 0.36 deleterious(0) possibly_damaging(0.474) TCGA-DU-6392-01 17 27014145 27014145 G A SUPT6H Missense_Mutation p.V914I 0.41 tolerated(1) benign(0.131) TCGA-DU-6392-01 17 27020846 27020846 C T SUPT6H Nonsense_Mutation p.R1256* 0.39 TCGA-DU-6392-01 17 27030736 27030737 - T PROCA1 Frame_Shift_Ins p.R284Qfs*? 0.13 TCGA-DU-6392-01 17 27031790 27031790 C T PROCA1 Missense_Mutation p.A55T 0.40 tolerated(1) benign(0.007) TCGA-DU-6392-01 17 27043037 27043037 C T RAB34 Silent p.S119S 0.22 TCGA-DU-6392-01 17 27061108 27061108 G A NEK8 Missense_Mutation p.C52Y 0.29 deleterious(0) probably_damaging(0.916) TCGA-DU-6392-01 17 27061884 27061884 G A NEK8 Silent p.L116L 0.35 TCGA-DU-6392-01 17 27064985 27064985 C T NEK8 Silent p.G346G 0.30 TCGA-DU-6392-01 17 27068168 27068168 G A NEK8 Missense_Mutation p.R602Q 0.26 tolerated(0.09) probably_damaging(0.981) TCGA-DU-6392-01 17 27076339 27076339 T C TRAF4 Missense_Mutation p.V386A 0.34 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 17 27086078 27086078 C T FAM222B Missense_Mutation p.R300H 0.43 tolerated(0.09) possibly_damaging(0.646) TCGA-DU-6392-01 17 27251052 27251052 G A PHF12 Missense_Mutation p.A197V 0.52 tolerated(0.38) benign(0.007) TCGA-DU-6392-01 17 27284489 27284489 C T SEZ6 Missense_Mutation p.V791M 0.13 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 17 27285122 27285122 C A SEZ6 Missense_Mutation p.E715D 0.21 tolerated(0.07) possibly_damaging(0.788) TCGA-DU-6392-01 17 27382238 27382238 C T PIPOX Missense_Mutation p.T322M 0.07 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 17 27893163 27893163 G A ABHD15 Silent p.A274A 0.30 TCGA-DU-6392-01 17 27934865 27934865 G A ANKRD13B Missense_Mutation p.V74M 0.26 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 27939446 27939446 G A ANKRD13B Missense_Mutation p.A429T 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 27946150 27946150 G A CORO6 Missense_Mutation p.L127F 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 27959346 27959346 C A SSH2 Nonsense_Mutation p.E929* 0.38 TCGA-DU-6392-01 17 27963207 27963208 - A SSH2 Frame_Shift_Ins p.S654* 0.24 TCGA-DU-6392-01 17 28380515 28380515 G T EFCAB5 Nonsense_Mutation p.E515* 0.40 TCGA-DU-6392-01 17 28419932 28419932 G T EFCAB5 Missense_Mutation p.Q1433H 0.13 deleterious(0.01) possibly_damaging(0.807) TCGA-DU-6392-01 17 28530324 28530324 G A SLC6A4 Nonsense_Mutation p.Q562* 0.34 TCGA-DU-6392-01 17 28544283 28544283 C T SLC6A4 Silent p.Q246Q 0.07 TCGA-DU-6392-01 17 28601165 28601165 G T BLMH Silent p.T232T 0.14 TCGA-DU-6392-01 17 28656417 28656417 C A TMIGD1 Missense_Mutation p.E71D 0.21 tolerated(1) benign(0.002) TCGA-DU-6392-01 17 28750624 28750624 A C CPD Silent p.G586G 0.24 TCGA-DU-6392-01 17 28804489 28804489 G A GOSR1 Intron 0.27 TCGA-DU-6392-01 17 2908723 2908723 G A RAP1GAP2 Missense_Mutation p.V421I 0.44 tolerated(0.42) benign(0.004) TCGA-DU-6392-01 17 29161853 29161853 G A ATAD5 Missense_Mutation p.V252I 0.28 tolerated(0.35) benign(0.003) TCGA-DU-6392-01 17 29162553 29162553 C T ATAD5 Missense_Mutation p.T485I 0.29 tolerated(0.41) benign(0.003) TCGA-DU-6392-01 17 29184017 29184017 A T ATAD5 Missense_Mutation p.T894S 0.13 deleterious(0.02) benign(0.045) TCGA-DU-6392-01 17 29185179 29185179 T C ATAD5 Missense_Mutation p.F932L 0.40 tolerated(1) benign(0.001) TCGA-DU-6392-01 17 29185232 29185232 G T ATAD5 Missense_Mutation p.E949D 0.40 tolerated(0.33) possibly_damaging(0.818) TCGA-DU-6392-01 17 29221637 29221637 C T ATAD5 Missense_Mutation p.L1785F 0.39 tolerated(0.11) benign(0.213) TCGA-DU-6392-01 17 29226234 29226234 G A TEFM Nonsense_Mutation p.Q346* 0.43 TCGA-DU-6392-01 17 29283406 29283406 C A ADAP2 Missense_Mutation p.P344T 0.19 deleterious(0.03) probably_damaging(0.911) TCGA-DU-6392-01 17 29324279 29324279 G A RNF135 Silent p.P233P 0.31 TCGA-DU-6392-01 17 29325990 29325990 G T RNF135 Missense_Mutation p.W360C 0.34 deleterious(0) possibly_damaging(0.803) TCGA-DU-6392-01 17 29508478 29508478 C T NF1 Nonsense_Mutation p.Q209* 0.36 TCGA-DU-6392-01 17 29508800 29508800 G A NF1 Missense_Mutation p.A243T 0.28 tolerated(0.11) probably_damaging(0.98) TCGA-DU-6392-01 17 29587487 29587487 C T NF1 Missense_Mutation p.L1511F 0.36 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 17 29622442 29622443 - T OMG Frame_Shift_Ins p.I303Nfs*24 0.08 TCGA-DU-6392-01 17 29622720 29622720 A G OMG Silent p.S210S 0.34 TCGA-DU-6392-01 17 29645983 29645983 G T EVI2A Missense_Mutation p.L40M 0.30 tolerated(0.21) probably_damaging(0.975) TCGA-DU-6392-01 17 2966243 2966243 C T OR1D5 Missense_Mutation p.R220H 0.19 tolerated(0.8) benign(0.001) TCGA-DU-6392-01 17 2966434 2966434 G A OR1D5 Silent p.G156G 0.52 TCGA-DU-6392-01 17 29670145 29670145 T - NF1 Frame_Shift_Del p.L2395* 0.14 TCGA-DU-6392-01 17 29848935 29848935 C T RAB11FIP4 Missense_Mutation p.A254V 0.29 tolerated(0.07) possibly_damaging(0.876) TCGA-DU-6392-01 17 30202297 30202297 T C UTP6 Missense_Mutation p.I421V 0.31 tolerated(1) benign(0.001) TCGA-DU-6392-01 17 30521076 30521076 A G RHOT1 Silent p.R273R 0.36 TCGA-DU-6392-01 17 30632392 30632392 G A RHBDL3 Missense_Mutation p.A272T 0.30 deleterious(0.02) possibly_damaging(0.904) TCGA-DU-6392-01 17 30666927 30666927 G A C17orf75 Silent p.S84S 0.35 TCGA-DU-6392-01 17 30694947 30694947 G T ZNF207 Missense_Mutation p.A360S 0.09 tolerated(0.58) benign(0.224) TCGA-DU-6392-01 17 30791130 30791130 G A PSMD11 Missense_Mutation p.A128T 0.31 tolerated(0.12) benign(0.024) TCGA-DU-6392-01 17 30986141 30986141 A G MYO1D Silent p.I779I 0.12 TCGA-DU-6392-01 17 31039046 31039046 C T MYO1D Missense_Mutation p.R694H 0.40 deleterious(0.04) benign(0.158) TCGA-DU-6392-01 17 31267806 31267806 C T TMEM98 Missense_Mutation p.T159M 0.30 deleterious(0.03) probably_damaging(0.938) TCGA-DU-6392-01 17 31324527 31324527 G T SPACA3 Missense_Mutation p.Q189H 0.45 tolerated(0.11) benign(0.071) TCGA-DU-6392-01 17 32483422 32483422 G A ASIC2 Silent p.L44L 0.33 TCGA-DU-6392-01 17 32612686 32612686 C T CCL11 5'Flank 0.54 TCGA-DU-6392-01 17 32614187 32614187 G T CCL11 Missense_Mutation p.R50M 0.11 deleterious(0.05) benign(0.14) TCGA-DU-6392-01 17 32614754 32614754 A G CCL11 3'UTR 0.33 TCGA-DU-6392-01 17 33285702 33285702 A G CCT6B Silent p.H71H 0.10 TCGA-DU-6392-01 17 33326454 33326454 G A LIG3 Missense_Mutation p.V748M 0.36 deleterious(0.03) possibly_damaging(0.737) TCGA-DU-6392-01 17 33520544 33520544 G A SLC35G3 Silent p.I261I 0.41 TCGA-DU-6392-01 17 3352234 3352234 G A SPATA22 Missense_Mutation p.S180L 0.07 tolerated(0.23) benign(0.05) TCGA-DU-6392-01 17 33585854 33585854 G A SLFN5 Missense_Mutation p.A49T 0.47 tolerated(0.06) possibly_damaging(0.77) TCGA-DU-6392-01 17 33690097 33690097 C A SLFN11 Missense_Mutation p.G244C 0.34 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 3379573 3379573 G T ASPA Missense_Mutation p.E40D 0.37 tolerated(0.06) probably_damaging(0.986) TCGA-DU-6392-01 17 33802201 33802201 A C SLFN12L Missense_Mutation p.I503S 0.29 tolerated(0.06) possibly_damaging(0.572) TCGA-DU-6392-01 17 33806712 33806712 T C SLFN12L Missense_Mutation p.R173G 0.12 tolerated(0.14) possibly_damaging(0.447) TCGA-DU-6392-01 17 33806727 33806727 C T SLFN12L Missense_Mutation p.E168K 0.56 tolerated(0.99) benign(0.003) TCGA-DU-6392-01 17 33904225 33904225 T A PEX12 Missense_Mutation p.E171V 0.47 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 33984748 33984748 C T AP2B1 Missense_Mutation p.P643S 0.32 tolerated(0.07) possibly_damaging(0.46) TCGA-DU-6392-01 17 34072536 34072536 C A GAS2L2 Missense_Mutation p.Q660H 0.07 deleterious(0.02) benign(0.043) TCGA-DU-6392-01 17 34072720 34072720 G A GAS2L2 Missense_Mutation p.A599V 0.25 tolerated(0.05) benign(0.036) TCGA-DU-6392-01 17 34079532 34079532 T C GAS2L2 Missense_Mutation p.N113S 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 34172001 34172001 C T TAF15 Silent p.Y566Y 0.08 TCGA-DU-6392-01 17 34173933 34173933 G A TAF15 Missense_Mutation p.R588H 0.40 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 17 34182066 34182066 C T C17orf66 3'UTR 0.45 TCGA-DU-6392-01 17 34190004 34190004 C A C17orf66 Missense_Mutation p.D251Y 0.44 deleterious(0) probably_damaging(0.959) TCGA-DU-6392-01 17 34261738 34261738 G A LYZL6 3'UTR 0.42 TCGA-DU-6392-01 17 3427532 3427532 C T TRPV3 Missense_Mutation p.G568D 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 3436060 3436060 C T TRPV3 Missense_Mutation p.R319H 0.29 tolerated(0.12) benign(0.002) TCGA-DU-6392-01 17 3458120 3458120 C T TRPV3 Missense_Mutation p.V9M 0.30 deleterious_low_confidence(0.04) benign(0.034) TCGA-DU-6392-01 17 34894404 34894404 T C PIGW Missense_Mutation p.F485S 0.10 deleterious(0) possibly_damaging(0.714) TCGA-DU-6392-01 17 3493176 3493176 C T SHPK Silent p.T323T 0.44 TCGA-DU-6392-01 17 34954662 34954662 A G DHRS11 Missense_Mutation p.D143G 0.35 deleterious(0) possibly_damaging(0.823) TCGA-DU-6392-01 17 34964923 34964923 C T MRM1 3'UTR 0.29 TCGA-DU-6392-01 17 3513958 3513958 G A SHPK Nonsense_Mutation p.Q445* 0.23 TCGA-DU-6392-01 17 35295511 35295511 G A LHX1 Missense_Mutation p.G6D 0.31 deleterious(0.01) possibly_damaging(0.469) TCGA-DU-6392-01 17 35310341 35310341 C T AATF Missense_Mutation p.P147S 0.45 tolerated(0.29) benign(0.007) TCGA-DU-6392-01 17 3552138 3552138 C T CTNS Intron 0.31 TCGA-DU-6392-01 17 35563703 35563703 C A ACACA Missense_Mutation p.E1314D 0.10 tolerated(0.14) probably_damaging(0.994) TCGA-DU-6392-01 17 3559990 3559990 C T CTNS Silent p.Y194Y 0.38 TCGA-DU-6392-01 17 35600310 35600310 G A ACACA Missense_Mutation p.L970F 0.38 deleterious(0.04) probably_damaging(0.997) TCGA-DU-6392-01 17 3560041 3560041 C T CTNS Silent p.H211H 0.35 TCGA-DU-6392-01 17 35601596 35601596 C T ACACA Missense_Mutation p.E884K 0.36 tolerated(0.09) probably_damaging(0.991) TCGA-DU-6392-01 17 35641812 35641812 G T ACACA Missense_Mutation p.S133Y 0.28 deleterious_low_confidence(0.03) benign(0.162) TCGA-DU-6392-01 17 35872424 35872424 G A DUSP14 Missense_Mutation p.R17Q 0.09 tolerated(0.62) benign(0.07) TCGA-DU-6392-01 17 35896177 35896177 G T SYNRG Silent p.A1190A 0.11 TCGA-DU-6392-01 17 35900533 35900533 G A SYNRG Silent p.P1105P 0.32 TCGA-DU-6392-01 17 35900587 35900587 A G SYNRG Silent p.S1087S 0.41 TCGA-DU-6392-01 17 35930816 35930816 C T SYNRG Missense_Mutation p.G423S 0.46 tolerated(0.22) possibly_damaging(0.542) TCGA-DU-6392-01 17 35986132 35986132 A G DDX52 Silent p.L315L 0.10 TCGA-DU-6392-01 17 35992283 35992283 C T DDX52 Missense_Mutation p.D155N 0.28 tolerated(0.14) benign(0.016) TCGA-DU-6392-01 17 3620083 3620083 C T ITGAE Missense_Mutation p.V1115I 0.34 tolerated(1) benign(0.002) TCGA-DU-6392-01 17 36243580 36243580 C T YWHAEP7 Splice_Site 0.45 TCGA-DU-6392-01 17 3643130 3643130 C T ITGAE Missense_Mutation p.A831T 0.36 deleterious(0.01) probably_damaging(0.959) TCGA-DU-6392-01 17 36483989 36483989 C A GPR179 Missense_Mutation p.E1821D 0.38 tolerated(0.18) benign(0.059) TCGA-DU-6392-01 17 36490664 36490664 C T GPR179 Silent p.S569S 0.41 TCGA-DU-6392-01 17 36499492 36499492 C T GPR179 Missense_Mutation p.A61T 0.29 tolerated(0.1) benign(0.032) TCGA-DU-6392-01 17 36865496 36865496 G A MLLT6 Missense_Mutation p.R142H 0.11 deleterious(0) unknown(0) TCGA-DU-6392-01 17 36873734 36873734 G A MLLT6 Silent p.L567L 0.37 TCGA-DU-6392-01 17 36876694 36876694 G A MLLT6 Missense_Mutation p.S742N 0.44 tolerated(0.72) unknown(0) TCGA-DU-6392-01 17 37111187 37111187 C A FBXO47 Splice_Site p.X144_splice 0.30 TCGA-DU-6392-01 17 37118182 37118182 C T FBXO47 Silent p.E100E 0.34 TCGA-DU-6392-01 17 37188635 37188635 C A LRRC37A11P RNA 0.39 TCGA-DU-6392-01 17 37264440 37264440 C T PLXDC1 Silent p.A176A 0.37 TCGA-DU-6392-01 17 37455300 37455300 C T FBXL20 Missense_Mutation p.G91D 0.32 deleterious(0) possibly_damaging(0.54) TCGA-DU-6392-01 17 37563934 37563934 G A MED1 Nonsense_Mutation p.R1514* 0.33 TCGA-DU-6392-01 17 37566109 37566109 C A MED1 Nonsense_Mutation p.E789* 0.11 TCGA-DU-6392-01 17 37627716 37627716 C A CDK12 Missense_Mutation p.P544H 0.10 probably_damaging(0.977) TCGA-DU-6392-01 17 37762415 37762415 C A NEUROD2 Missense_Mutation p.K146N 0.42 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 17 3776741 3776741 C T CAMKK1 Missense_Mutation p.A376T 0.36 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 17 37901696 37901696 C A GRB7 Missense_Mutation p.L395M 0.10 deleterious(0.04) probably_damaging(1) TCGA-DU-6392-01 17 37902408 37902408 C T GRB7 Missense_Mutation p.L492F 0.41 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 17 37922061 37922061 G A IKZF3 Silent p.H504H 0.11 TCGA-DU-6392-01 17 38024841 38024841 T C ZPBP2 Missense_Mutation p.F31S 0.06 tolerated(0.33) possibly_damaging(0.649) TCGA-DU-6392-01 17 38029311 38029311 C A ZPBP2 Missense_Mutation p.P214T 0.10 tolerated(0.12) possibly_damaging(0.826) TCGA-DU-6392-01 17 3808550 3808550 C A P2RX1 Missense_Mutation p.Q83H 0.41 tolerated(0.13) benign(0.02) TCGA-DU-6392-01 17 38133298 38133298 C T GSDMA Missense_Mutation p.T442I 0.45 deleterious(0.01) benign(0.101) TCGA-DU-6392-01 17 38140580 38140580 C T PSMD3 Missense_Mutation p.A85V 0.11 deleterious(0) possibly_damaging(0.627) TCGA-DU-6392-01 17 38146435 38146435 C T PSMD3 Silent p.V322V 0.30 TCGA-DU-6392-01 17 38151521 38151521 C T PSMD3 Missense_Mutation p.R397W 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 38175732 38175732 G A MED24 3'UTR 0.08 TCGA-DU-6392-01 17 38178736 38178736 G T MED24 Missense_Mutation p.L812M 0.21 deleterious(0) probably_damaging(0.963) TCGA-DU-6392-01 17 38185090 38185090 C A MED24 Silent p.R466R 0.27 TCGA-DU-6392-01 17 38245666 38245666 T C THRA Intron 0.29 TCGA-DU-6392-01 17 38251886 38251886 C A NR1D1 Missense_Mutation p.E353D 0.33 tolerated(0.52) benign(0.003) TCGA-DU-6392-01 17 38318393 38318393 G T CASC3 Nonsense_Mutation p.E199* 0.09 TCGA-DU-6392-01 17 38420925 38420925 G A WIPF2 Missense_Mutation p.S166N 0.32 tolerated(0.08) benign(0.28) TCGA-DU-6392-01 17 3844783 3844783 G A ATP2A3 Missense_Mutation p.P571S 0.38 tolerated(0.83) benign(0.017) TCGA-DU-6392-01 17 3844865 3844865 C T ATP2A3 Silent p.E543E 0.40 TCGA-DU-6392-01 17 38546236 38546236 G A TOP2A Missense_Mutation p.S1483L 0.50 deleterious_low_confidence(0.03) benign(0.007) TCGA-DU-6392-01 17 38562686 38562686 G A TOP2A Missense_Mutation p.R635C 0.34 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 17 38563914 38563914 C T TOP2A Missense_Mutation p.A505T 0.37 deleterious(0.01) possibly_damaging(0.904) TCGA-DU-6392-01 17 38645061 38645061 G A TNS4 Silent p.S200S 0.35 TCGA-DU-6392-01 17 38711144 38711144 G A CCR7 Silent p.I329I 0.07 TCGA-DU-6392-01 17 38786991 38786991 G A SMARCE1 Silent p.D334D 0.32 TCGA-DU-6392-01 17 38821333 38821333 G T KRT222 Missense_Mutation p.L7I 0.08 deleterious(0.02) probably_damaging(0.969) TCGA-DU-6392-01 17 38859507 38859507 G T KRT24 Missense_Mutation p.L147I 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 38906730 38906730 G A KRT25 Silent p.T359T 0.07 TCGA-DU-6392-01 17 38922856 38922856 G T KRT26 Missense_Mutation p.L440I 0.09 tolerated(0.22) benign(0.039) TCGA-DU-6392-01 17 38922877 38922877 G A KRT26 Silent p.L433L 0.36 TCGA-DU-6392-01 17 38927952 38927952 G A KRT26 Silent p.F138F 0.11 TCGA-DU-6392-01 17 38938542 38938542 G T KRT27 Silent p.S68S 0.11 TCGA-DU-6392-01 17 38948722 38948722 G T KRT28 Missense_Mutation p.S451Y 0.14 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-DU-6392-01 17 38953513 38953513 G A KRT28 Silent p.C237C 0.34 TCGA-DU-6392-01 17 39019766 39019766 C T KRT12 Missense_Mutation p.E356K 0.45 deleterious(0) probably_damaging(0.936) TCGA-DU-6392-01 17 39079172 39079172 C T KRT23 3'UTR 0.33 TCGA-DU-6392-01 17 39116560 39116560 C T KRT39 Missense_Mutation p.R397H 0.42 deleterious(0.02) benign(0.293) TCGA-DU-6392-01 17 39197061 39197061 A G KRTAP1-1 3'UTR 0.43 TCGA-DU-6392-01 17 39240601 39240601 G T KRTAP4-7 Missense_Mutation p.S48I 0.26 deleterious(0.01) unknown(0) TCGA-DU-6392-01 17 39254125 39254125 A G KRTAP4-8 Missense_Mutation p.V71A 0.54 tolerated(0.05) unknown(0) TCGA-DU-6392-01 17 39261783 39261783 G T KRTAP4-9 Missense_Mutation p.S48I 0.12 deleterious(0) unknown(0) TCGA-DU-6392-01 17 39305720 39305720 G A KRTAP4-5 Silent p.C100C 0.25 TCGA-DU-6392-01 17 39323973 39323973 C T KRTAP4-3 Missense_Mutation p.R151H 0.60 tolerated(0.06) unknown(0) TCGA-DU-6392-01 17 39341123 39341123 G A KRTAP4-1 5'UTR 0.18 TCGA-DU-6392-01 17 39406017 39406017 G A KRTAP9-4 Silent p.R15R 0.33 TCGA-DU-6392-01 17 39406254 39406254 C T KRTAP9-4 Silent p.S94S 0.37 TCGA-DU-6392-01 17 3945724 3945724 G A ZZEF1 Missense_Mutation p.S2102L 0.42 tolerated(0.36) benign(0.001) TCGA-DU-6392-01 17 39502798 39502798 C A KRT33A Missense_Mutation p.E333D 0.38 deleterious(0.01) possibly_damaging(0.521) TCGA-DU-6392-01 17 39503321 39503321 C T KRT33A Missense_Mutation p.A248T 0.40 tolerated(0.68) benign(0.002) TCGA-DU-6392-01 17 39521183 39521183 C T KRT33B Silent p.Q315Q 0.33 TCGA-DU-6392-01 17 39521689 39521689 C A KRT33B Silent p.L235L 0.46 TCGA-DU-6392-01 17 39522799 39522799 G A KRT33B Silent p.L171L 0.38 TCGA-DU-6392-01 17 39534269 39534269 C A KRT34 3'UTR 0.52 TCGA-DU-6392-01 17 39635705 39635705 C T KRT35 Missense_Mutation p.G202D 0.44 deleterious(0) possibly_damaging(0.806) TCGA-DU-6392-01 17 39635742 39635742 C T KRT35 Missense_Mutation p.V190M 0.40 deleterious(0.03) possibly_damaging(0.624) TCGA-DU-6392-01 17 39644948 39644948 C A KRT36 Missense_Mutation p.R163M 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 39766626 39766626 C T KRT16 Missense_Mutation p.E413K 0.31 deleterious(0.01) possibly_damaging(0.85) TCGA-DU-6392-01 17 39871718 39871718 C A GAST Silent p.I10I 0.09 TCGA-DU-6392-01 17 39921211 39921211 C T JUP Missense_Mutation p.V340M 0.30 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 17 39928078 39928078 G T JUP Missense_Mutation p.P10H 0.25 deleterious(0.02) benign(0.359) TCGA-DU-6392-01 17 39973393 39973393 G A FKBP10 Missense_Mutation p.C110Y 0.30 deleterious(0) possibly_damaging(0.783) TCGA-DU-6392-01 17 3999910 3999910 C T ZZEF1 Missense_Mutation p.R586K 0.08 tolerated(0.41) benign(0.085) TCGA-DU-6392-01 17 40001975 40001975 G A KLHL10 Missense_Mutation p.A428T 0.36 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 17 40004288 40004288 A T KLHL10 Missense_Mutation p.N519I 0.43 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 17 40010060 40010060 G A KLHL11 Nonsense_Mutation p.Q687* 0.44 TCGA-DU-6392-01 17 40010251 40010251 A C KLHL11 Missense_Mutation p.I623S 0.40 tolerated(0.05) benign(0.022) TCGA-DU-6392-01 17 40011097 40011097 C T KLHL11 Missense_Mutation p.C341Y 0.37 tolerated(1) benign(0) TCGA-DU-6392-01 17 4005701 4005701 G T ZZEF1 Missense_Mutation p.L528I 0.44 deleterious(0.04) probably_damaging(0.998) TCGA-DU-6392-01 17 40060989 40060989 G A ACLY Missense_Mutation p.T353M 0.40 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 40120334 40120334 C T CNP Silent p.D84D 0.42 TCGA-DU-6392-01 17 40257143 40257143 G T DHX58 Missense_Mutation p.L432M 0.30 deleterious(0) possibly_damaging(0.887) TCGA-DU-6392-01 17 40267022 40267022 C A KAT2A Missense_Mutation p.S636I 0.07 deleterious(0.01) benign(0.035) TCGA-DU-6392-01 17 4027225 4027225 G T ZZEF1 Missense_Mutation p.L159I 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 17 40280316 40280316 T G RAB5C Missense_Mutation p.K168T 0.32 deleterious(0.01) possibly_damaging(0.794) TCGA-DU-6392-01 17 40337396 40337396 T A HCRT 5'UTR 0.22 TCGA-DU-6392-01 17 40379676 40379676 C A STAT5B Missense_Mutation p.Q52H 0.10 deleterious(0.04) probably_damaging(0.992) TCGA-DU-6392-01 17 40557040 40557040 G A PTRF Missense_Mutation p.R280C 0.33 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 17 40696246 40696246 G A NAGLU Missense_Mutation p.G741D 0.39 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-DU-6392-01 17 40714858 40714858 C A COASY Missense_Mutation p.A102D 0.37 tolerated(0.06) benign(0.316) TCGA-DU-6392-01 17 40717044 40717044 C T COASY Silent p.G456G 0.09 TCGA-DU-6392-01 17 40725521 40725521 T C PSMC3IP Missense_Mutation p.H153R 0.11 tolerated(0.17) benign(0.021) TCGA-DU-6392-01 17 4076668 4076668 C T ANKFY1 Missense_Mutation p.A1041T 0.39 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 17 40811931 40811931 G T TUBG2 Missense_Mutation p.E43D 0.12 tolerated(0.46) benign(0) TCGA-DU-6392-01 17 40839862 40839862 G A CNTNAP1 Missense_Mutation p.R390H 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 40840894 40840894 G A CNTNAP1 Missense_Mutation p.G486D 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-DU-6392-01 17 40843236 40843236 G A CNTNAP1 Missense_Mutation p.R714H 0.35 deleterious(0.01) possibly_damaging(0.793) TCGA-DU-6392-01 17 40845514 40845514 C A CNTNAP1 Missense_Mutation p.D984E 0.34 deleterious(0) possibly_damaging(0.63) TCGA-DU-6392-01 17 40857141 40857141 G A EZH1 Nonsense_Mutation p.Q634* 0.10 TCGA-DU-6392-01 17 40858040 40858040 C A EZH1 Missense_Mutation p.Q608H 0.56 deleterious(0.02) probably_damaging(0.986) TCGA-DU-6392-01 17 40928262 40928262 G T VPS25 Splice_Site p.X115_splice 0.09 TCGA-DU-6392-01 17 40939405 40939405 A G WNK4 Missense_Mutation p.E529G 0.13 deleterious(0.05) unknown(0) TCGA-DU-6392-01 17 40950138 40950138 G A COA3 Silent p.L88L 0.17 TCGA-DU-6392-01 17 40951108 40951108 G A CNTD1 Missense_Mutation p.R8Q 0.21 deleterious(0.04) benign(0.295) TCGA-DU-6392-01 17 40970838 40970838 G A BECN1 Silent p.G106G 0.35 TCGA-DU-6392-01 17 40991321 40991321 G A PSME3 Missense_Mutation p.R216H 0.50 deleterious(0) possibly_damaging(0.566) TCGA-DU-6392-01 17 41063057 41063057 C A G6PC Missense_Mutation p.L230M 0.28 tolerated(0.11) benign(0.213) TCGA-DU-6392-01 17 41107181 41107181 C T AARSD1 Silent p.L285L 0.08 TCGA-DU-6392-01 17 41131673 41131673 C T PTGES3L-AARSD1 Missense_Mutation p.A49T 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 17 41180611 41180611 C T RND2 Nonsense_Mutation p.R200* 0.19 TCGA-DU-6392-01 17 41201147 41201147 G T BRCA1 Silent p.T1820T 0.32 TCGA-DU-6392-01 17 41244542 41244542 G T BRCA1 Missense_Mutation p.N1002K 0.45 tolerated(0.72) benign(0.002) TCGA-DU-6392-01 17 41244758 41244758 A G BRCA1 Silent p.P930P 0.10 TCGA-DU-6392-01 17 41347051 41347051 C A NBR1 Missense_Mutation p.P582H 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 41362148 41362148 T C NBR1 3'UTR 0.19 TCGA-DU-6392-01 17 41477481 41477481 C T ARL4D Silent p.G127G 0.26 TCGA-DU-6392-01 17 41568556 41568556 G T DHX8 Nonsense_Mutation p.E111* 0.42 TCGA-DU-6392-01 17 41571057 41571057 G A DHX8 Missense_Mutation p.D339N 0.45 tolerated(0.09) benign(0.216) TCGA-DU-6392-01 17 41576238 41576238 C A DHX8 Missense_Mutation p.L437I 0.44 tolerated(0.93) benign(0.007) TCGA-DU-6392-01 17 41598189 41598189 A G DHX8 Missense_Mutation p.E1003G 0.38 deleterious(0) possibly_damaging(0.863) TCGA-DU-6392-01 17 41601117 41601117 C A DHX8 Missense_Mutation p.L1189I 0.09 tolerated(0.35) benign(0.241) TCGA-DU-6392-01 17 41601141 41601141 C T DHX8 Missense_Mutation p.R1197C 0.33 deleterious(0.01) benign(0.049) TCGA-DU-6392-01 17 41610054 41610054 C T ETV4 Missense_Mutation p.A267T 0.30 tolerated(0.72) benign(0.006) TCGA-DU-6392-01 17 41886367 41886367 G A MPP3 Missense_Mutation p.T513M 0.32 tolerated(0.09) benign(0.022) TCGA-DU-6392-01 17 41924561 41924561 C T CD300LG 5'UTR 0.37 TCGA-DU-6392-01 17 41924583 41924583 G T CD300LG 5'UTR 0.33 TCGA-DU-6392-01 17 41939326 41939326 G A CD300LG 3'UTR 0.40 TCGA-DU-6392-01 17 41955231 41955231 C A MPP2 Missense_Mutation p.A535S 0.39 tolerated(0.09) possibly_damaging(0.721) TCGA-DU-6392-01 17 41957259 41957259 C T MPP2 Missense_Mutation p.R415H 0.45 deleterious(0.02) benign(0.303) TCGA-DU-6392-01 17 41975705 41975705 G T MPP2 Silent p.A25A 0.43 TCGA-DU-6392-01 17 42090509 42090509 C T TMEM101 Silent p.S111S 0.34 TCGA-DU-6392-01 17 42113579 42113579 G C LSM12 Silent p.S195S 0.13 TCGA-DU-6392-01 17 42168789 42168789 C T HDAC5 Silent p.T413T 0.24 TCGA-DU-6392-01 17 42168852 42168852 C T HDAC5 Silent p.P392P 0.23 TCGA-DU-6392-01 17 42225804 42225804 G T C17orf53 Missense_Mutation p.K211N 0.07 deleterious(0.02) benign(0.14) TCGA-DU-6392-01 17 42226360 42226360 C T C17orf53 Missense_Mutation p.R397C 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-DU-6392-01 17 42266537 42266537 C T TMUB2 Silent p.S61S 0.31 TCGA-DU-6392-01 17 42271485 42271485 C T ATXN7L3 3'UTR 0.38 TCGA-DU-6392-01 17 42289051 42289051 G A UBTF Missense_Mutation p.R324C 0.42 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 17 42334864 42334864 C T SLC4A1 Missense_Mutation p.G494S 0.22 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 42335492 42335492 G T SLC4A1 Missense_Mutation p.L382M 0.33 tolerated(0.16) benign(0.414) TCGA-DU-6392-01 17 42338163 42338163 C A SLC4A1 Missense_Mutation p.E63D 0.11 deleterious(0) possibly_damaging(0.474) TCGA-DU-6392-01 17 42392184 42392184 C T RUNDC3A Silent p.I180I 0.25 TCGA-DU-6392-01 17 42449625 42449625 G A ITGA2B 3'UTR 0.30 TCGA-DU-6392-01 17 42474972 42474972 A G GPATCH8 Silent p.G1491G 0.18 TCGA-DU-6392-01 17 42477443 42477443 G A GPATCH8 Nonsense_Mutation p.R668* 0.36 TCGA-DU-6392-01 17 42636613 42636613 G A FZD2 Silent p.T519T 0.29 TCGA-DU-6392-01 17 42807456 42807456 G A DBF4B Missense_Mutation p.V137I 0.38 tolerated(0.15) benign(0.001) TCGA-DU-6392-01 17 42882694 42882694 G A GJC1 Silent p.G164G 0.40 TCGA-DU-6392-01 17 42942371 42942371 C T EFTUD2 Silent p.T404T 0.32 TCGA-DU-6392-01 17 42992534 42992534 C A GFAP Missense_Mutation p.K107N 0.25 deleterious(0) possibly_damaging(0.462) TCGA-DU-6392-01 17 43111732 43111732 G A DCAKD Missense_Mutation p.R47W 0.15 tolerated(0.14) possibly_damaging(0.791) TCGA-DU-6392-01 17 43180480 43180480 C T NMT1 Silent p.F385F 0.24 TCGA-DU-6392-01 17 43190527 43190527 G A PLCD3 Silent p.D697D 0.45 TCGA-DU-6392-01 17 43227297 43227297 A G HEXIM1 Missense_Mutation p.E247G 0.10 deleterious(0.03) probably_damaging(0.92) TCGA-DU-6392-01 17 43320643 43320643 G T FMNL1 Silent p.R723R 0.11 TCGA-DU-6392-01 17 43322423 43322423 G A FMNL1 Silent p.P892P 0.51 TCGA-DU-6392-01 17 43343970 43343970 G A SPATA32 5'Flank 0.35 TCGA-DU-6392-01 17 43515214 43515214 C T PLEKHM1 3'UTR 0.10 TCGA-DU-6392-01 17 43528077 43528077 G T PLEKHM1 Missense_Mutation p.F850L 0.29 deleterious(0) possibly_damaging(0.755) TCGA-DU-6392-01 17 43531164 43531164 A G PLEKHM1 Missense_Mutation p.I685T 0.36 deleterious(0) possibly_damaging(0.548) TCGA-DU-6392-01 17 43531380 43531380 G A PLEKHM1 Missense_Mutation p.A613V 0.35 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 17 43922633 43922633 G A SPPL2C Missense_Mutation p.V121M 0.38 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 17 44171934 44171934 C A KANSL1 Missense_Mutation p.A475S 0.10 tolerated(0.47) benign(0.28) TCGA-DU-6392-01 17 4434385 4434385 G T SPNS2 Missense_Mutation p.A255S 0.09 tolerated(0.36) possibly_damaging(0.596) TCGA-DU-6392-01 17 44788360 44788360 G A NSF Missense_Mutation p.S501N 0.39 tolerated(0.31) benign(0) TCGA-DU-6392-01 17 44791260 44791260 G A NSF Missense_Mutation p.A557T 0.26 deleterious(0.01) probably_damaging(0.912) TCGA-DU-6392-01 17 44806225 44806225 C T NSF Silent p.Y611Y 0.33 TCGA-DU-6392-01 17 44833275 44833275 C T NSF 3'UTR 0.50 TCGA-DU-6392-01 17 44845839 44845839 G A WNT3 Silent p.H305H 0.10 TCGA-DU-6392-01 17 4498602 4498602 G T SMTNL2 Missense_Mutation p.E323D 0.16 tolerated(0.3) possibly_damaging(0.771) TCGA-DU-6392-01 17 45232100 45232100 G A CDC27 Nonsense_Mutation p.Q299* 0.39 TCGA-DU-6392-01 17 45361952 45361952 C T ITGB3 Nonsense_Mutation p.R169* 0.37 TCGA-DU-6392-01 17 45367564 45367564 T C ITGB3 Missense_Mutation p.L350P 0.31 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 4539075 4539075 C T ALOX15 Silent p.P380P 0.37 TCGA-DU-6392-01 17 4540418 4540418 C T ALOX15 Missense_Mutation p.V315I 0.11 deleterious(0.04) benign(0.313) TCGA-DU-6392-01 17 45425209 45425209 C T EFCAB13 Nonsense_Mutation p.R185* 0.28 TCGA-DU-6392-01 17 4579733 4579733 C T PELP1 Missense_Mutation p.E258K 0.39 possibly_damaging(0.487) TCGA-DU-6392-01 17 45885670 45885670 G A OSBPL7 Missense_Mutation p.A839V 0.47 tolerated(0.59) possibly_damaging(0.721) TCGA-DU-6392-01 17 45886548 45886548 G A OSBPL7 Silent p.G688G 0.41 TCGA-DU-6392-01 17 45890677 45890677 G A OSBPL7 Silent p.Y564Y 0.48 TCGA-DU-6392-01 17 45904016 45904016 G T MRPL10 Missense_Mutation p.F183L 0.36 tolerated(0.69) benign(0.004) TCGA-DU-6392-01 17 45914418 45914418 G A LRRC46 Missense_Mutation p.A300T 0.40 tolerated(0.21) benign(0.004) TCGA-DU-6392-01 17 45924776 45924776 C A SP6 Missense_Mutation p.K340N 0.45 tolerated(0.24) benign(0.097) TCGA-DU-6392-01 17 46058898 46058898 C T CDK5RAP3 3'UTR 0.46 TCGA-DU-6392-01 17 4624310 4624310 C T ARRB2 Silent p.D423D 0.31 TCGA-DU-6392-01 17 46262119 46262119 A C SKAP1 Missense_Mutation p.F178C 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 46423329 46423329 C T SKAP1 Missense_Mutation p.S73N 0.55 tolerated(0.11) benign(0.025) TCGA-DU-6392-01 17 46629855 46629855 C T HOXB3 5'UTR 0.50 TCGA-DU-6392-01 17 46654355 46654355 G T HOXB4 Missense_Mutation p.P162H 0.29 deleterious(0) possibly_damaging(0.514) TCGA-DU-6392-01 17 46865317 46865317 G T TTLL6 Missense_Mutation p.T482N 0.37 deleterious(0.04) possibly_damaging(0.642) TCGA-DU-6392-01 17 47237959 47237959 C T B4GALNT2 Missense_Mutation p.T301I 0.06 tolerated(0.17) benign(0.024) TCGA-DU-6392-01 17 47243497 47243497 C A B4GALNT2 Missense_Mutation p.L386M 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 47243584 47243584 G A B4GALNT2 Missense_Mutation p.V415M 0.36 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 17 4725991 4725991 C T PLD2 Silent p.Y878Y 0.48 TCGA-DU-6392-01 17 47583691 47583691 C T NGFR Missense_Mutation p.T80I 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 17 47696646 47696646 T A SPOP Missense_Mutation p.K101I 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 47781573 47781573 G T SLC35B1 Missense_Mutation p.L182M 0.37 tolerated(0.97) benign(0.084) TCGA-DU-6392-01 17 47799936 47799936 C T FAM117A Silent p.E129E 0.50 TCGA-DU-6392-01 17 4799092 4799092 T C MINK1 Missense_Mutation p.V1110A 0.30 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 17 4799865 4799865 G A MINK1 Missense_Mutation p.E1253K 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-DU-6392-01 17 4805792 4805792 G A CHRNE Intron 0.38 TCGA-DU-6392-01 17 48270050 48270050 G T COL1A1 Missense_Mutation p.P627H 0.31 unknown(0) TCGA-DU-6392-01 17 48272410 48272410 G A COL1A1 Missense_Mutation p.P451S 0.32 unknown(0) TCGA-DU-6392-01 17 4836289 4836289 G A GP1BA Silent p.S130S 0.44 TCGA-DU-6392-01 17 48433533 48433533 C G XYLT2 Missense_Mutation p.L465V 0.08 deleterious(0.01) possibly_damaging(0.737) TCGA-DU-6392-01 17 4844395 4844395 G T RNF167 Missense_Mutation p.M36I 0.29 tolerated(0.07) possibly_damaging(0.775) TCGA-DU-6392-01 17 4848417 4848417 C T RNF167 3'UTR 0.53 TCGA-DU-6392-01 17 4858806 4858806 G A ENO3 Missense_Mutation p.D258N 0.40 tolerated_low_confidence(0.05) possibly_damaging(0.819) TCGA-DU-6392-01 17 48626519 48626519 G A SPATA20 Missense_Mutation p.R211H 0.46 deleterious(0.02) benign(0.008) TCGA-DU-6392-01 17 48629436 48629436 C T SPATA20 Missense_Mutation p.R618W 0.30 deleterious(0) probably_damaging(0.913) TCGA-DU-6392-01 17 4862963 4862963 C T SPAG7 Intron 0.42 TCGA-DU-6392-01 17 4863040 4863040 G A SPAG7 Intron 0.07 TCGA-DU-6392-01 17 48632596 48632596 G A SPATA20 Missense_Mutation p.V721M 0.52 deleterious(0.01) probably_damaging(0.973) TCGA-DU-6392-01 17 48653030 48653030 C A CACNA1G Missense_Mutation p.L423M 0.48 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 17 48655621 48655621 G A CACNA1G Missense_Mutation p.S666N 0.31 tolerated(0.34) benign(0.001) TCGA-DU-6392-01 17 48655849 48655849 G A CACNA1G Missense_Mutation p.S742N 0.15 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 17 48741188 48741188 G A ABCC3 Missense_Mutation p.R382H 0.33 deleterious(0) benign(0.262) TCGA-DU-6392-01 17 48750833 48750833 C T ABCC3 Nonsense_Mutation p.R805* 0.39 TCGA-DU-6392-01 17 48753805 48753805 C T ABCC3 Silent p.V1078V 0.36 TCGA-DU-6392-01 17 48757159 48757159 G T ABCC3 Missense_Mutation p.V1236L 0.17 tolerated(0.13) possibly_damaging(0.483) TCGA-DU-6392-01 17 48761033 48761033 G T ABCC3 Missense_Mutation p.E1290D 0.11 tolerated(0.12) possibly_damaging(0.885) TCGA-DU-6392-01 17 48761367 48761367 C A ABCC3 Missense_Mutation p.R1338S 0.08 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 17 48777955 48777955 C A ANKRD40 Missense_Mutation p.R86M 0.24 deleterious(0) probably_damaging(0.932) TCGA-DU-6392-01 17 4883291 4883291 G T CAMTA2 Missense_Mutation p.F465L 0.31 deleterious_low_confidence(0.03) probably_damaging(0.983) TCGA-DU-6392-01 17 48918032 48918032 C T WFIKKN2 Silent p.S461S 0.11 TCGA-DU-6392-01 17 48940436 48940436 C T TOB1 Missense_Mutation p.G315S 0.38 tolerated(0.31) benign(0.012) TCGA-DU-6392-01 17 49067917 49067917 G T SPAG9 Missense_Mutation p.S837R 0.45 deleterious(0.01) benign(0.434) TCGA-DU-6392-01 17 49067996 49067996 T C SPAG9 Missense_Mutation p.D811G 0.13 tolerated(0.27) benign(0.001) TCGA-DU-6392-01 17 4907888 4907888 G A KIF1C Missense_Mutation p.A323T 0.32 deleterious(0.01) benign(0.232) TCGA-DU-6392-01 17 49365522 49365522 C A UTP18 Silent p.I487I 0.37 TCGA-DU-6392-01 17 50008453 50008453 A C CA10 Missense_Mutation p.L59R 0.10 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 17 5009499 5009499 C T ZNF232 Missense_Mutation p.V319I 0.42 tolerated(1) benign(0.198) TCGA-DU-6392-01 17 5013046 5013046 C A ZNF232 Missense_Mutation p.E47D 0.37 tolerated(0.1) benign(0.388) TCGA-DU-6392-01 17 5048783 5048783 G T USP6 Missense_Mutation p.K692N 0.36 tolerated_low_confidence(0.24) probably_damaging(0.999) TCGA-DU-6392-01 17 5087482 5087482 G T ZNF594 Missense_Mutation p.L24I 0.34 tolerated(0.15) benign(0.067) TCGA-DU-6392-01 17 5087572 5087572 C A ZNF594 5'UTR 0.21 TCGA-DU-6392-01 17 5114138 5114138 G A SCIMP Silent p.D132D 0.77 TCGA-DU-6392-01 17 51902154 51902154 T C KIF2B Missense_Mutation p.V587A 0.39 tolerated(0.75) benign(0.001) TCGA-DU-6392-01 17 52992099 52992099 G T TOM1L1 Nonsense_Mutation p.E200* 0.45 TCGA-DU-6392-01 17 5322786 5322786 A G NUP88 Missense_Mutation p.F62S 0.09 tolerated(0.23) benign(0.21) TCGA-DU-6392-01 17 53345266 53345266 G A HLF Silent p.E90E 0.37 TCGA-DU-6392-01 17 5347651 5347651 G A DHX33 Silent p.V666V 0.25 TCGA-DU-6392-01 17 5424984 5424984 A T NLRP1 Missense_Mutation p.L1215M 0.09 tolerated(1) benign(0.028) TCGA-DU-6392-01 17 5433810 5433810 C T NLRP1 Missense_Mutation p.A1171T 0.38 tolerated(0.33) benign(0.175) TCGA-DU-6392-01 17 54452064 54452064 C T ANKFN1 Missense_Mutation p.T303I 0.29 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 5461658 5461658 C T NLRP1 Splice_Site p.X786_splice 0.23 TCGA-DU-6392-01 17 5461726 5461726 C T NLRP1 Missense_Mutation p.V764M 0.10 tolerated(0.06) possibly_damaging(0.791) TCGA-DU-6392-01 17 5463309 5463309 G A NLRP1 Missense_Mutation p.A236V 0.36 tolerated_low_confidence(0.29) benign(0.032) TCGA-DU-6392-01 17 5487182 5487182 C T NLRP1 Silent p.A32A 0.56 TCGA-DU-6392-01 17 55183014 55183014 C A AKAP1 Silent p.V63V 0.28 TCGA-DU-6392-01 17 55193476 55193476 G A AKAP1 Silent p.T762T 0.31 TCGA-DU-6392-01 17 55334830 55334830 G A MSI2 Missense_Mutation p.S36N 0.31 tolerated(0.15) benign(0.117) TCGA-DU-6392-01 17 55752348 55752348 G A MSI2 Missense_Mutation p.R269Q 0.40 deleterious(0.01) probably_damaging(0.956) TCGA-DU-6392-01 17 56051876 56051876 C T VEZF1 Missense_Mutation p.M508I 0.41 deleterious_low_confidence(0) benign(0.403) TCGA-DU-6392-01 17 56271114 56271114 C T EPX Missense_Mutation p.A129V 0.24 tolerated(0.25) benign(0.005) TCGA-DU-6392-01 17 56274504 56274504 G A EPX Missense_Mutation p.A336T 0.35 deleterious(0.01) benign(0.265) TCGA-DU-6392-01 17 56329583 56329583 G A LPO Missense_Mutation p.C274Y 0.40 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 17 56342180 56342180 G T LPO Missense_Mutation p.R455I 0.10 deleterious(0) probably_damaging(0.91) TCGA-DU-6392-01 17 56350917 56350917 G A MPO Silent p.V493V 0.31 TCGA-DU-6392-01 17 56355248 56355248 G A MPO Silent p.L382L 0.28 TCGA-DU-6392-01 17 56382460 56382460 G T BZRAP1 Missense_Mutation p.L1836M 0.09 tolerated(0.16) possibly_damaging(0.498) TCGA-DU-6392-01 17 56395645 56395645 G T BZRAP1 Missense_Mutation p.P623H 0.33 tolerated(0.22) possibly_damaging(0.453) TCGA-DU-6392-01 17 56400738 56400738 G A BZRAP1 Missense_Mutation p.S342L 0.41 tolerated(0.44) benign(0.072) TCGA-DU-6392-01 17 56438188 56438188 C A RNF43 Missense_Mutation p.A269S 0.44 tolerated(0.24) benign(0.158) TCGA-DU-6392-01 17 56557567 56557567 G T HSF5 Silent p.S204S 0.12 TCGA-DU-6392-01 17 56581192 56581192 G T MTMR4 Missense_Mutation p.S575Y 0.35 deleterious(0.01) benign(0.027) TCGA-DU-6392-01 17 56619325 56619325 C T C17orf47 Missense_Mutation p.V522I 0.35 deleterious(0.04) possibly_damaging(0.621) TCGA-DU-6392-01 17 56621448 56621448 C T C17orf47 Missense_Mutation p.V34I 0.41 tolerated(1) benign(0) TCGA-DU-6392-01 17 56635179 56635179 C A TEX14 Missense_Mutation p.G1480C 0.30 deleterious(0) probably_damaging(0.977) TCGA-DU-6392-01 17 56647841 56647841 C A TEX14 Missense_Mutation p.R1287I 0.13 deleterious(0.01) benign(0.284) TCGA-DU-6392-01 17 56688591 56688591 C T TEX14 Missense_Mutation p.S378N 0.37 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 17 56811597 56811597 C A RAD51C 3'UTR 0.45 TCGA-DU-6392-01 17 56833345 56833345 G T PPM1E 5'UTR 0.12 TCGA-DU-6392-01 17 56833353 56833353 G T PPM1E 5'UTR 0.24 TCGA-DU-6392-01 17 57158493 57158493 G A TRIM37 Missense_Mutation p.R153C 0.46 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 57288491 57288491 C T SMG8 Missense_Mutation p.T360I 0.31 tolerated(0.13) benign(0.021) TCGA-DU-6392-01 17 57289832 57289832 T C SMG8 Silent p.N630N 0.09 TCGA-DU-6392-01 17 57465709 57465709 C T YPEL2 Nonsense_Mutation p.R47* 0.08 TCGA-DU-6392-01 17 57644083 57644083 T C DHX40 Missense_Mutation p.S70P 0.14 tolerated(0.17) benign(0.011) TCGA-DU-6392-01 17 57682891 57682891 C T DHX40 Missense_Mutation p.P686S 0.42 tolerated(0.28) benign(0.304) TCGA-DU-6392-01 17 57746275 57746275 C T CLTC Missense_Mutation p.P756S 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-DU-6392-01 17 57762508 57762508 G A CLTC Missense_Mutation p.R1509K 0.36 tolerated(0.07) possibly_damaging(0.562) TCGA-DU-6392-01 17 57941091 57941091 T G TUBD1 Missense_Mutation p.N398T 0.38 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 17 57943976 57943976 C A TUBD1 Missense_Mutation p.D357Y 0.36 deleterious(0) possibly_damaging(0.738) TCGA-DU-6392-01 17 58024066 58024066 C T RPS6KB1 Nonsense_Mutation p.R499* 0.33 TCGA-DU-6392-01 17 58121016 58121016 T G HEATR6 Silent p.R1152R 0.23 TCGA-DU-6392-01 17 58121478 58121478 A G HEATR6 Missense_Mutation p.S998P 0.09 tolerated(0.11) benign(0.031) TCGA-DU-6392-01 17 58125691 58125691 G T HEATR6 Missense_Mutation p.S869Y 0.34 deleterious(0.01) probably_damaging(0.974) TCGA-DU-6392-01 17 58133519 58133519 C A HEATR6 Missense_Mutation p.C720F 0.34 deleterious(0) probably_damaging(0.965) TCGA-DU-6392-01 17 58260799 58260799 G A USP32 Nonsense_Mutation p.R1284* 0.45 TCGA-DU-6392-01 17 58267980 58267980 C T USP32 Missense_Mutation p.A1196T 0.10 deleterious(0.03) probably_damaging(0.993) TCGA-DU-6392-01 17 58275770 58275770 C T USP32 Silent p.K1095K 0.38 TCGA-DU-6392-01 17 58511092 58511092 C T C17orf64 3'Flank 0.44 TCGA-DU-6392-01 17 58701094 58701094 G A PPM1D Missense_Mutation p.E229K 0.36 deleterious(0.03) possibly_damaging(0.449) TCGA-DU-6392-01 17 58734076 58734076 A G PPM1D Silent p.E378E 0.07 TCGA-DU-6392-01 17 58952033 58952033 G A BCAS3 Missense_Mutation p.V199I 0.39 tolerated(0.26) benign(0.031) TCGA-DU-6392-01 17 59067480 59067480 G A BCAS3 Missense_Mutation p.R457H 0.26 deleterious(0) probably_damaging(0.919) TCGA-DU-6392-01 17 59112048 59112048 A G BCAS3 Silent p.Q568Q 0.08 TCGA-DU-6392-01 17 59115389 59115389 G A BCAS3 Silent p.S649S 0.38 TCGA-DU-6392-01 17 59457913 59457913 C T BCAS3 Intron 0.14 TCGA-DU-6392-01 17 59469378 59469378 C T BCAS3 Silent p.S893S 0.43 TCGA-DU-6392-01 17 59955432 59955432 C A INTS2 Missense_Mutation p.V766L 0.29 tolerated(0.34) benign(0.034) TCGA-DU-6392-01 17 60060019 60060019 C T MED13 Silent p.T1115T 0.07 TCGA-DU-6392-01 17 60072628 60072628 G A MED13 Missense_Mutation p.A689V 0.14 tolerated(0.43) benign(0.001) TCGA-DU-6392-01 17 60108947 60108947 G A MED13 Silent p.D289D 0.41 TCGA-DU-6392-01 17 60504004 60504004 C T METTL2A Nonsense_Mutation p.R183* 0.42 TCGA-DU-6392-01 17 60526208 60526208 C T METTL2A 3'UTR 0.57 TCGA-DU-6392-01 17 60678165 60678165 C A TLK2 Missense_Mutation p.H568Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 17 60743542 60743542 G A MRC2 Missense_Mutation p.S203N 0.40 deleterious(0.01) possibly_damaging(0.904) TCGA-DU-6392-01 17 60865889 60865889 C A MARCH10 Missense_Mutation p.E54D 0.09 tolerated(0.2) benign(0.016) TCGA-DU-6392-01 17 60879033 60879033 G A MARCH10 Nonsense_Mutation p.Q22* 0.42 TCGA-DU-6392-01 17 61392000 61392000 G A TANC2 Missense_Mutation p.A397T 0.31 tolerated(0.05) benign(0.016) TCGA-DU-6392-01 17 61498030 61498030 C T TANC2 Missense_Mutation p.R1563C 0.40 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-DU-6392-01 17 61498942 61498942 A G TANC2 Missense_Mutation p.T1867A 0.08 tolerated_low_confidence(0.26) benign(0.001) TCGA-DU-6392-01 17 61499143 61499143 C A TANC2 Missense_Mutation p.L1934I 0.11 tolerated_low_confidence(0.44) benign(0.001) TCGA-DU-6392-01 17 61511949 61511949 C A CYB561 Missense_Mutation p.K190N 0.31 tolerated(0.37) benign(0.004) TCGA-DU-6392-01 17 61513147 61513147 C T CYB561 Missense_Mutation p.V103M 0.39 deleterious(0.02) probably_damaging(0.951) TCGA-DU-6392-01 17 61570881 61570881 C T ACE Silent p.Y999Y 0.07 TCGA-DU-6392-01 17 61611329 61611329 G T KCNH6 Missense_Mutation p.S253I 0.11 deleterious(0) probably_damaging(0.921) TCGA-DU-6392-01 17 61623025 61623025 C A KCNH6 Missense_Mutation p.P916H 0.10 deleterious_low_confidence(0) benign(0.396) TCGA-DU-6392-01 17 61662612 61662612 G A DCAF7 Missense_Mutation p.A60T 0.38 tolerated(0.06) possibly_damaging(0.846) TCGA-DU-6392-01 17 61768517 61768517 G A MAP3K3 Missense_Mutation p.R454H 0.46 deleterious(0) benign(0.313) TCGA-DU-6392-01 17 61770979 61770979 G A MAP3K3 Missense_Mutation p.A606T 0.35 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 17 61776415 61776415 G A LIMD2 Silent p.G19G 0.58 TCGA-DU-6392-01 17 61895444 61895444 G A DDX42 Missense_Mutation p.G835R 0.40 deleterious_low_confidence(0) benign(0.059) TCGA-DU-6392-01 17 61895514 61895514 G A DDX42 Missense_Mutation p.R858Q 0.37 deleterious_low_confidence(0.01) benign(0.158) TCGA-DU-6392-01 17 61902614 61902614 C T FTSJ3 Missense_Mutation p.V195I 0.38 deleterious(0) probably_damaging(0.928) TCGA-DU-6392-01 17 61950572 61950572 C T CSH2 Silent p.A46A 0.23 TCGA-DU-6392-01 17 61987304 61987304 C T CSHL1 Intron 0.36 TCGA-DU-6392-01 17 62018424 62018424 G A SCN4A Missense_Mutation p.R1740W 0.39 deleterious(0) probably_damaging(0.918) TCGA-DU-6392-01 17 62020442 62020442 G A SCN4A Silent p.G1344G 0.41 TCGA-DU-6392-01 17 62036796 62036796 G T SCN4A Silent p.V616V 0.44 TCGA-DU-6392-01 17 62038714 62038714 C T SCN4A Missense_Mutation p.A562T 0.39 tolerated(0.1) benign(0.001) TCGA-DU-6392-01 17 62080864 62080864 A G C17orf72 3'Flank 0.33 TCGA-DU-6392-01 17 62082676 62082676 G A ICAM2 Missense_Mutation p.P40L 0.45 tolerated(0.65) benign(0.033) TCGA-DU-6392-01 17 62122804 62122804 G A ERN1 Silent p.G856G 0.22 TCGA-DU-6392-01 17 62125289 62125289 G A ERN1 Missense_Mutation p.R820C 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 62144287 62144287 A T ERN1 Missense_Mutation p.S196T 0.30 tolerated(0.3) benign(0.218) TCGA-DU-6392-01 17 62504835 62504835 C T CEP95 Missense_Mutation p.P49S 0.27 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 62557707 62557707 C A SMURF2 Missense_Mutation p.Q409H 0.35 deleterious(0.02) probably_damaging(0.921) TCGA-DU-6392-01 17 62796730 62796730 G A PLEKHM1P RNA 0.32 TCGA-DU-6392-01 17 62825337 62825337 G A RNU7-115P 5'Flank 0.25 TCGA-DU-6392-01 17 62893393 62893393 G A LRRC37A3 5'UTR 0.17 TCGA-DU-6392-01 17 63534281 63534281 G A AXIN2 Intron 0.40 TCGA-DU-6392-01 17 6364870 6364870 C A PITPNM3 Missense_Mutation p.W771C 0.39 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 17 641146 641146 C T FAM57A Silent p.Y89Y 0.31 TCGA-DU-6392-01 17 64208250 64208250 C A APOH 3'UTR 0.09 TCGA-DU-6392-01 17 64683231 64683231 C T PRKCA Nonsense_Mutation p.R178* 0.37 TCGA-DU-6392-01 17 64684448 64684448 C T PRKCA Nonsense_Mutation p.R239* 0.38 TCGA-DU-6392-01 17 64684476 64684476 A G PRKCA Missense_Mutation p.D248G 0.45 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 17 64873395 64873395 C T CACNG5 5'UTR 0.34 TCGA-DU-6392-01 17 649630 649630 G A GEMIN4 Silent p.R551R 0.15 TCGA-DU-6392-01 17 65040730 65040730 C T CACNG1 5'UTR 0.25 TCGA-DU-6392-01 17 65050168 65050168 G A CACNG1 Missense_Mutation p.E96K 0.40 tolerated(0.1) benign(0.251) TCGA-DU-6392-01 17 65052275 65052275 G A CACNG1 Missense_Mutation p.C186Y 0.30 deleterious(0.01) probably_damaging(0.972) TCGA-DU-6392-01 17 65082989 65082989 G A HELZ Missense_Mutation p.P1817L 0.35 tolerated_low_confidence(0.05) unknown(0) TCGA-DU-6392-01 17 6515250 6515250 C A KIAA0753 Missense_Mutation p.A512S 0.33 deleterious(0.02) benign(0.201) TCGA-DU-6392-01 17 6515458 6515458 C T KIAA0753 Silent p.Q442Q 0.30 TCGA-DU-6392-01 17 65212053 65212053 T C HELZ Splice_Site p.X71_splice 0.25 TCGA-DU-6392-01 17 6524242 6524242 A C KIAA0753 Missense_Mutation p.F394C 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-DU-6392-01 17 6531734 6531734 C T KIAA0753 Missense_Mutation p.D141N 0.44 deleterious(0.01) possibly_damaging(0.585) TCGA-DU-6392-01 17 65732040 65732040 T A NOL11 Missense_Mutation p.F319I 0.44 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 17 65733763 65733763 G A NOL11 Missense_Mutation p.R453Q 0.32 tolerated(0.69) benign(0.002) TCGA-DU-6392-01 17 65850685 65850685 G A BPTF Missense_Mutation p.E415K 0.34 possibly_damaging(0.706) TCGA-DU-6392-01 17 65908009 65908009 G T BPTF Missense_Mutation p.V1337F 0.62 possibly_damaging(0.578) TCGA-DU-6392-01 17 65955939 65955939 A G BPTF Missense_Mutation p.K2737E 0.22 probably_damaging(0.969) TCGA-DU-6392-01 17 65978371 65978371 T A BPTF Silent p.S2910S 0.51 TCGA-DU-6392-01 17 66040087 66040087 C T KPNA2 Missense_Mutation p.A355V 0.35 deleterious(0.03) benign(0.33) TCGA-DU-6392-01 17 66042784 66042784 A C KPNA2 3'UTR 0.25 TCGA-DU-6392-01 17 6606399 6606399 C A SLC13A5 Missense_Mutation p.K202N 0.35 tolerated(0.15) benign(0.012) TCGA-DU-6392-01 17 66247070 66247070 G T AMZ2 Missense_Mutation p.R140I 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 17 66274235 66274235 A G SLC16A6 Missense_Mutation p.F76S 0.50 deleterious(0) probably_damaging(0.957) TCGA-DU-6392-01 17 66303502 66303502 C T ARSG 5'UTR 0.62 TCGA-DU-6392-01 17 66416711 66416711 G T ARSG 3'UTR 0.41 TCGA-DU-6392-01 17 66925236 66925236 A C ABCA8 Missense_Mutation p.I360S 0.42 deleterious(0.04) benign(0.1) TCGA-DU-6392-01 17 66937019 66937019 T C ABCA8 Missense_Mutation p.T61A 0.12 tolerated(0.9) benign(0.004) TCGA-DU-6392-01 17 66979978 66979978 G A ABCA9 Silent p.S1504S 0.43 TCGA-DU-6392-01 17 66982385 66982385 G A ABCA9 Silent p.N1376N 0.36 TCGA-DU-6392-01 17 67004269 67004269 C T ABCA9 Missense_Mutation p.M1085I 0.28 tolerated(0.18) benign(0.026) TCGA-DU-6392-01 17 67039765 67039765 G A ABCA9 Missense_Mutation p.A222V 0.38 tolerated(0.27) benign(0.008) TCGA-DU-6392-01 17 67079048 67079048 G A ABCA6 Silent p.L1528L 0.39 TCGA-DU-6392-01 17 67081189 67081189 G A ABCA6 Silent p.D1388D 0.57 TCGA-DU-6392-01 17 67107013 67107013 G A ABCA6 Missense_Mutation p.A734V 0.33 tolerated(0.1) probably_damaging(0.994) TCGA-DU-6392-01 17 67124790 67124790 G A ABCA6 Silent p.S363S 0.33 TCGA-DU-6392-01 17 67130869 67130869 C A ABCA6 Nonsense_Mutation p.G159* 0.10 TCGA-DU-6392-01 17 67189381 67189381 C T ABCA10 Silent p.L550L 0.38 TCGA-DU-6392-01 17 67197727 67197727 G T ABCA10 Silent p.I363I 0.31 TCGA-DU-6392-01 17 67246065 67246065 A T ABCA5 Silent p.S1582S 0.11 TCGA-DU-6392-01 17 67273863 67273863 C T ABCA5 Missense_Mutation p.S838N 0.37 deleterious(0.02) benign(0.002) TCGA-DU-6392-01 17 67286071 67286071 T G ABCA5 Missense_Mutation p.T572P 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 17 674702 674702 C T GLOD4 Splice_Site p.X136_splice 0.40 TCGA-DU-6392-01 17 679034 679034 A G GLOD4 Silent p.N129N 0.14 TCGA-DU-6392-01 17 68129385 68129385 C A KCNJ16 Missense_Mutation p.P386H 0.11 deleterious(0.01) possibly_damaging(0.491) TCGA-DU-6392-01 17 68171380 68171380 G A KCNJ2 Missense_Mutation p.R67Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 17 68172103 68172103 C T KCNJ2 Missense_Mutation p.T308M 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 6913121 6913121 C T AC027763.2 Missense_Mutation p.A31T 0.38 TCGA-DU-6392-01 17 6929875 6929875 G A BCL6B Missense_Mutation p.C330Y 0.45 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 17 6978460 6978460 G A CLEC10A Silent p.D288D 0.42 TCGA-DU-6392-01 17 7077130 7077130 C T ASGR1 Missense_Mutation p.D242N 0.32 deleterious(0.04) probably_damaging(0.974) TCGA-DU-6392-01 17 7094074 7094074 C T DLG4 Missense_Mutation p.D753N 0.14 deleterious(0.04) possibly_damaging(0.695) TCGA-DU-6392-01 17 7099810 7099810 C T DLG4 Missense_Mutation p.A433T 0.36 tolerated(0.05) benign(0.321) TCGA-DU-6392-01 17 7100196 7100196 C T DLG4 Silent p.T364T 0.32 TCGA-DU-6392-01 17 71165681 71165681 A C SSTR2 Missense_Mutation p.K75Q 0.16 deleterious(0.02) probably_damaging(0.944) TCGA-DU-6392-01 17 71282025 71282025 G A CDC42EP4 Silent p.S205S 0.51 TCGA-DU-6392-01 17 71381994 71381994 G A SDK2 Nonsense_Mutation p.R1521* 0.35 TCGA-DU-6392-01 17 71384091 71384091 G A SDK2 Silent p.S1426S 0.44 TCGA-DU-6392-01 17 71415339 71415339 G A SDK2 Missense_Mutation p.H718Y 0.47 tolerated(0.11) probably_damaging(0.992) TCGA-DU-6392-01 17 7162168 7162168 C A ELP5 Silent p.T253T 0.35 TCGA-DU-6392-01 17 7162849 7162849 C A ELP5 Intron 0.45 TCGA-DU-6392-01 17 7165231 7165231 C A CLDN7 Missense_Mutation p.Q44H 0.54 deleterious(0.04) benign(0.053) TCGA-DU-6392-01 17 7187151 7187151 C T SLC2A4 Missense_Mutation p.L140F 0.55 tolerated(0.1) benign(0.03) TCGA-DU-6392-01 17 72249233 72249233 G A TTYH2 Missense_Mutation p.D425N 0.36 tolerated(0.11) benign(0.073) TCGA-DU-6392-01 17 7224923 7224923 G A NEURL4 Nonsense_Mutation p.Q1019* 0.09 TCGA-DU-6392-01 17 72249269 72249269 G A TTYH2 Missense_Mutation p.A437T 0.33 deleterious(0.02) possibly_damaging(0.792) TCGA-DU-6392-01 17 7224947 7224947 T G NEURL4 Missense_Mutation p.S1011R 0.09 deleterious(0.01) benign(0.191) TCGA-DU-6392-01 17 7227169 7227169 C T NEURL4 Missense_Mutation p.R742H 0.33 tolerated(0.57) possibly_damaging(0.466) TCGA-DU-6392-01 17 7227784 7227784 G A NEURL4 Missense_Mutation p.T610I 0.14 deleterious(0) possibly_damaging(0.839) TCGA-DU-6392-01 17 72278016 72278016 C A DNAI2 Missense_Mutation p.F20L 0.36 deleterious(0.02) probably_damaging(0.922) TCGA-DU-6392-01 17 72297261 72297261 T G DNAI2 Missense_Mutation p.L314W 0.39 deleterious(0.01) benign(0.013) TCGA-DU-6392-01 17 7231164 7231164 C T NEURL4 Missense_Mutation p.A108T 0.48 tolerated(0.88) benign(0.027) TCGA-DU-6392-01 17 72339248 72339248 C T KIF19 Silent p.I135I 0.33 TCGA-DU-6392-01 17 72345413 72345413 C T KIF19 Missense_Mutation p.R380C 0.35 tolerated(0.58) benign(0) TCGA-DU-6392-01 17 72349048 72349048 C T KIF19 Missense_Mutation p.A690V 0.38 tolerated(0.53) benign(0.003) TCGA-DU-6392-01 17 72356130 72356130 C T BTBD17 Missense_Mutation p.A114T 0.42 deleterious(0.02) possibly_damaging(0.71) TCGA-DU-6392-01 17 72470740 72470740 C A CD300A Missense_Mutation p.P150H 0.10 tolerated(0.17) benign(0.033) TCGA-DU-6392-01 17 72519682 72519682 C T CD300LB Intron 0.09 TCGA-DU-6392-01 17 72540830 72540830 G A CD300C Silent p.G106G 0.36 TCGA-DU-6392-01 17 7256633 7256633 C T KCTD11 Silent p.A124A 0.46 TCGA-DU-6392-01 17 72613389 72613389 C T CD300E Missense_Mutation p.A86T 0.26 tolerated(1) benign(0.014) TCGA-DU-6392-01 17 72725432 72725432 C A RAB37 Missense_Mutation p.S37Y 0.38 deleterious(0) possibly_damaging(0.894) TCGA-DU-6392-01 17 72769101 72769101 C A NAT9 Missense_Mutation p.D90Y 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-DU-6392-01 17 72840351 72840351 C T GRIN2C Intron 0.21 TCGA-DU-6392-01 17 72846006 72846006 C T GRIN2C Missense_Mutation p.V520I 0.45 tolerated(0.4) benign(0.024) TCGA-DU-6392-01 17 72861912 72861912 C T FDXR Missense_Mutation p.V223M 0.26 deleterious(0) probably_damaging(0.943) TCGA-DU-6392-01 17 72877209 72877209 T C FADS6 Missense_Mutation p.N239D 0.20 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 72915984 72915984 A G USH1G Missense_Mutation p.V316A 0.33 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 17 72916250 72916250 G A USH1G Silent p.G227G 0.37 TCGA-DU-6392-01 17 72954809 72954809 A G HID1 Missense_Mutation p.V400A 0.36 deleterious(0.01) benign(0.108) TCGA-DU-6392-01 17 72958369 72958369 C T HID1 Missense_Mutation p.A191T 0.50 tolerated(0.08) benign(0.023) TCGA-DU-6392-01 17 73059154 73059154 G A KCTD2 3'UTR 0.65 TCGA-DU-6392-01 17 73094231 73094231 T C SLC16A5 Missense_Mutation p.S100P 0.07 deleterious(0.02) probably_damaging(0.936) TCGA-DU-6392-01 17 73096509 73096509 G A SLC16A5 Missense_Mutation p.G251S 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 73126698 73126698 G T NT5C Missense_Mutation p.T164N 0.29 deleterious(0.04) probably_damaging(1) TCGA-DU-6392-01 17 7319304 7319304 G A NLGN2 Silent p.L504L 0.08 TCGA-DU-6392-01 17 7319374 7319374 G A NLGN2 Missense_Mutation p.V528I 0.38 tolerated(0.29) benign(0.015) TCGA-DU-6392-01 17 73231231 73231231 C T NUP85 Missense_Mutation p.R602W 0.38 tolerated(0.15) possibly_damaging(0.697) TCGA-DU-6392-01 17 7324242 7324243 - A SPEM1 Frame_Shift_Ins p.K84* 0.10 TCGA-DU-6392-01 17 73258623 73258623 T G MRPS7 Missense_Mutation p.D43E 0.35 tolerated(1) benign(0.004) TCGA-DU-6392-01 17 73261787 73261787 C A MRPS7 Missense_Mutation p.P171H 0.27 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 73274401 73274401 G A SLC25A19 Missense_Mutation p.R159C 0.11 tolerated(0.05) benign(0.035) TCGA-DU-6392-01 17 7329070 7329070 C T C17orf74 Silent p.H21H 0.36 TCGA-DU-6392-01 17 73389779 73389779 G A GRB2 5'UTR 0.32 TCGA-DU-6392-01 17 73491697 73491697 C T KIAA0195 Missense_Mutation p.P973S 0.38 tolerated(0.3) probably_damaging(0.962) TCGA-DU-6392-01 17 73492414 73492414 C T KIAA0195 Silent p.G1035G 0.42 TCGA-DU-6392-01 17 73499250 73499250 G A CASKIN2 Silent p.G635G 0.36 TCGA-DU-6392-01 17 7350450 7350450 C T CHRNB1 Missense_Mutation p.R148C 0.49 tolerated(0.08) benign(0.145) TCGA-DU-6392-01 17 73569667 73569667 G A LLGL2 Missense_Mutation p.R944H 0.40 tolerated_low_confidence(0.6) benign(0.001) TCGA-DU-6392-01 17 73627598 73627598 G T RECQL5 Silent p.P460P 0.36 TCGA-DU-6392-01 17 73647151 73647151 C T RECQL5 Intron 0.44 TCGA-DU-6392-01 17 73658586 73658586 C A RECQL5 Missense_Mutation p.K248N 0.08 deleterious(0.05) benign(0.052) TCGA-DU-6392-01 17 73702562 73702562 C T SAP30BP Silent p.I296I 0.42 TCGA-DU-6392-01 17 73723542 73723542 C T ITGB4 Missense_Mutation p.R74W 0.43 deleterious(0.03) benign(0.005) TCGA-DU-6392-01 17 73746348 73746348 G T ITGB4 Missense_Mutation p.R1158M 0.17 deleterious(0) possibly_damaging(0.565) TCGA-DU-6392-01 17 73808617 73808617 G A UNK Silent p.A191A 0.15 TCGA-DU-6392-01 17 73827216 73827216 C T UNC13D Missense_Mutation p.G863D 0.31 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 17 73835975 73835975 C T UNC13D Missense_Mutation p.V334I 0.23 tolerated(1) benign(0) TCGA-DU-6392-01 17 73851271 73851271 C A WBP2 Intron 0.19 TCGA-DU-6392-01 17 73871043 73871043 C A TRIM47 Missense_Mutation p.G480C 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 17 73911096 73911096 A G FBF1 Splice_Site p.X861_splice 0.12 TCGA-DU-6392-01 17 73919558 73919558 G A FBF1 Missense_Mutation p.A363V 0.55 tolerated(0.15) benign(0.23) TCGA-DU-6392-01 17 73951917 73951917 G T ACOX1 Missense_Mutation p.P217H 0.10 deleterious(0.03) possibly_damaging(0.795) TCGA-DU-6392-01 17 73951967 73951967 A G ACOX1 Silent p.Y200Y 0.08 TCGA-DU-6392-01 17 73969727 73969727 C T ACOX1 Intron 0.31 TCGA-DU-6392-01 17 7399865 7399865 G T POLR2A Missense_Mutation p.G157V 0.08 probably_damaging(0.916) TCGA-DU-6392-01 17 74004796 74004796 C T EVPL Missense_Mutation p.R1497Q 0.35 deleterious(0.04) possibly_damaging(0.676) TCGA-DU-6392-01 17 74006603 74006603 G A EVPL Nonsense_Mutation p.R895* 0.46 TCGA-DU-6392-01 17 7405278 7405278 G T POLR2A Missense_Mutation p.K803N 0.31 possibly_damaging(0.568) TCGA-DU-6392-01 17 74060232 74060232 A C SRP68 Missense_Mutation p.M129R 0.41 deleterious(0) possibly_damaging(0.894) TCGA-DU-6392-01 17 74066475 74066475 C A SRP68 Missense_Mutation p.D79Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 17 74077726 74077726 G A ZACN Missense_Mutation p.R257Q 0.41 tolerated(0.9) benign(0.002) TCGA-DU-6392-01 17 74079743 74079743 C T EXOC7 Missense_Mutation p.D732N 0.41 tolerated(0.06) benign(0.106) TCGA-DU-6392-01 17 74288647 74288647 C T QRICH2 Missense_Mutation p.A555T 0.29 deleterious(0.04) benign(0.017) TCGA-DU-6392-01 17 74344663 74344663 C A PRPSAP1 Splice_Site p.X57_splice 0.26 TCGA-DU-6392-01 17 74392626 74392626 G A UBE2O Silent p.L798L 0.41 TCGA-DU-6392-01 17 74394562 74394562 G A UBE2O Silent p.D629D 0.35 TCGA-DU-6392-01 17 74395629 74395629 G A UBE2O Missense_Mutation p.T510M 0.09 deleterious(0.03) benign(0.131) TCGA-DU-6392-01 17 74465918 74465918 C A AANAT Missense_Mutation p.L209M 0.60 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 17 7460102 7460102 C T TNFSF12 Silent p.D127D 0.49 TCGA-DU-6392-01 17 7468005 7468005 G T SENP3 Missense_Mutation p.S260I 0.45 deleterious(0.02) benign(0.01) TCGA-DU-6392-01 17 74714828 74714828 G A JMJD6 Missense_Mutation p.R399C 0.39 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-DU-6392-01 17 7480800 7480800 C T EIF4A1 Nonsense_Mutation p.R255* 0.47 TCGA-DU-6392-01 17 7484215 7484215 G A CD68 Silent p.Q254Q 0.45 TCGA-DU-6392-01 17 74868844 74868844 G A MGAT5B Missense_Mutation p.V5I 0.31 unknown(0) TCGA-DU-6392-01 17 7490863 7490863 G A MPDU1 Silent p.A246A 0.37 TCGA-DU-6392-01 17 7495189 7495189 C T FXR2 Missense_Mutation p.A661T 0.16 tolerated_low_confidence(0.52) benign(0.001) TCGA-DU-6392-01 17 7496092 7496092 C T FXR2 Missense_Mutation p.R550H 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 17 7496313 7496313 G T FXR2 Missense_Mutation p.S506Y 0.41 deleterious_low_confidence(0.04) probably_damaging(0.943) TCGA-DU-6392-01 17 7504815 7504815 G A FXR2 Missense_Mutation p.A191V 0.40 tolerated(0.43) benign(0.155) TCGA-DU-6392-01 17 7507089 7507089 C A FXR2 Missense_Mutation p.E145D 0.43 tolerated(0.12) benign(0.117) TCGA-DU-6392-01 17 75208175 75208175 C A SEC14L1 Silent p.T585T 0.41 TCGA-DU-6392-01 17 75208277 75208277 C T SEC14L1 Silent p.S619S 0.33 TCGA-DU-6392-01 17 7533526 7533526 G A SHBG Silent p.L12L 0.27 TCGA-DU-6392-01 17 7536134 7536134 T A SHBG Missense_Mutation p.L306H 0.33 deleterious(0) probably_damaging(0.94) TCGA-DU-6392-01 17 7536191 7536191 C T SHBG Missense_Mutation p.A325V 0.40 tolerated(1) benign(0) TCGA-DU-6392-01 17 75398611 75398611 G A SEPT9 Missense_Mutation p.A183T 0.56 tolerated_low_confidence(0.29) benign(0.004) TCGA-DU-6392-01 17 7558002 7558002 G T ATP1B2 Missense_Mutation p.K203N 0.27 deleterious(0) possibly_damaging(0.481) TCGA-DU-6392-01 17 7577139 7577139 G A TP53 Missense_Mutation p.R267W 0.27 tolerated(0.05) possibly_damaging(0.728) TCGA-DU-6392-01 17 7578407 7578407 G A TP53 Missense_Mutation p.R175C 0.32 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.22 TCGA-DU-6392-01 17 76117674 76117674 G A TMC6 Missense_Mutation p.A449V 0.48 tolerated(0.79) benign(0.009) TCGA-DU-6392-01 17 76130984 76130984 C A TMC8 Missense_Mutation p.P341T 0.12 tolerated(0.21) possibly_damaging(0.743) TCGA-DU-6392-01 17 76354470 76354470 C T SOCS3 3'UTR 0.44 TCGA-DU-6392-01 17 7637893 7637893 G A DNAH2 Missense_Mutation p.R282H 0.39 benign(0.005) TCGA-DU-6392-01 17 7643819 7643819 G T DNAH2 Silent p.P486P 0.27 TCGA-DU-6392-01 17 76447622 76447622 T C DNAH17 Missense_Mutation p.R3541G 0.09 benign(0.433) TCGA-DU-6392-01 17 76450573 76450573 G A DNAH17 Missense_Mutation p.A3448V 0.31 benign(0.002) TCGA-DU-6392-01 17 76482147 76482147 C T DNAH17 Silent p.S2376S 0.43 TCGA-DU-6392-01 17 76487536 76487536 C A DNAH17 Missense_Mutation p.D2206Y 0.38 probably_damaging(0.979) TCGA-DU-6392-01 17 76487568 76487568 G T DNAH17 Missense_Mutation p.P2195H 0.35 probably_damaging(0.98) TCGA-DU-6392-01 17 76488801 76488801 G A DNAH17 Missense_Mutation p.P2138L 0.62 benign(0.033) TCGA-DU-6392-01 17 76498036 76498036 G A DNAH17-AS1 3'UTR 0.58 TCGA-DU-6392-01 17 76548828 76548828 A G DNAH17 Silent p.I746I 0.08 TCGA-DU-6392-01 17 76554290 76554290 T C DNAH17 Missense_Mutation p.Q693R 0.50 benign(0.007) TCGA-DU-6392-01 17 7662914 7662914 G T DNAH2 Nonsense_Mutation p.G875* 0.30 TCGA-DU-6392-01 17 7671223 7671223 C T DNAH2 Silent p.L1227L 0.27 TCGA-DU-6392-01 17 76825052 76825052 C A USP36 Missense_Mutation p.Q171H 0.55 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 17 7696336 7696336 G T DNAH2 Missense_Mutation p.R2461M 0.35 possibly_damaging(0.881) TCGA-DU-6392-01 17 7696355 7696355 G T DNAH2 Missense_Mutation p.K2467N 0.51 possibly_damaging(0.903) TCGA-DU-6392-01 17 76967788 76967788 G A LGALS3BP Missense_Mutation p.A543V 0.44 tolerated(0.72) benign(0.002) TCGA-DU-6392-01 17 76968416 76968416 C T LGALS3BP Missense_Mutation p.A334T 0.08 tolerated(0.46) benign(0.024) TCGA-DU-6392-01 17 76989898 76989898 G A CANT1 Missense_Mutation p.R314C 0.52 tolerated(0.09) possibly_damaging(0.759) TCGA-DU-6392-01 17 77080732 77080732 G A ENGASE Missense_Mutation p.G519S 0.34 tolerated(0.68) benign(0.021) TCGA-DU-6392-01 17 77082252 77082252 A G ENGASE Missense_Mutation p.M685V 0.36 tolerated(0.69) benign(0) TCGA-DU-6392-01 17 7734794 7734794 C A DNAH2 Silent p.P4182P 0.11 TCGA-DU-6392-01 17 7751261 7751261 G A KDM6B Missense_Mutation p.S552N 0.33 unknown(0) TCGA-DU-6392-01 17 7752261 7752261 C T KDM6B Silent p.G885G 0.47 TCGA-DU-6392-01 17 7753421 7753421 T C KDM6B Missense_Mutation p.V1200A 0.44 benign(0.144) TCGA-DU-6392-01 17 7753424 7753424 T C KDM6B Missense_Mutation p.L1201P 0.35 probably_damaging(0.999) TCGA-DU-6392-01 17 77709177 77709177 C T ENPP7 Silent p.S245S 0.37 TCGA-DU-6392-01 17 77758262 77758262 C T CBX2 Silent p.C340C 0.29 TCGA-DU-6392-01 17 77768387 77768387 C T CBX8 3'UTR 0.11 TCGA-DU-6392-01 17 77768388 77768388 G A CBX8 3'UTR 0.41 TCGA-DU-6392-01 17 77808427 77808427 C T CBX4 Silent p.P338P 0.40 TCGA-DU-6392-01 17 77808613 77808613 C T CBX4 Silent p.A276A 0.40 TCGA-DU-6392-01 17 77808831 77808831 C T CBX4 Missense_Mutation p.A204T 0.34 tolerated(0.43) benign(0.012) TCGA-DU-6392-01 17 77808854 77808854 T C CBX4 Missense_Mutation p.D196G 0.38 deleterious(0.01) probably_damaging(0.984) TCGA-DU-6392-01 17 77809109 77809109 G A CBX4 Missense_Mutation p.A111V 0.40 tolerated(0.39) benign(0.017) TCGA-DU-6392-01 17 77921465 77921465 G A TBC1D16 Silent p.D569D 0.27 TCGA-DU-6392-01 17 78022390 78022390 C A CCDC40 Missense_Mutation p.P229T 0.20 tolerated(0.05) benign(0.005) TCGA-DU-6392-01 17 78023947 78023947 C T CCDC40 Nonsense_Mutation p.Q342* 0.40 TCGA-DU-6392-01 17 7802784 7802784 C T CHD3 Missense_Mutation p.R882W 0.35 possibly_damaging(0.898) TCGA-DU-6392-01 17 7803351 7803351 G T CHD3 Missense_Mutation p.K953N 0.45 possibly_damaging(0.728) TCGA-DU-6392-01 17 78073542 78073542 G A CCDC40 Missense_Mutation p.A1133T 0.29 tolerated(0.2) benign(0.087) TCGA-DU-6392-01 17 78078631 78078631 C T GAA Silent p.C82C 0.41 TCGA-DU-6392-01 17 78079616 78079616 G A GAA Silent p.P205P 0.10 TCGA-DU-6392-01 17 78083763 78083763 C T GAA Missense_Mutation p.S449L 0.38 deleterious(0) possibly_damaging(0.509) TCGA-DU-6392-01 17 78085806 78085806 C T GAA Missense_Mutation p.A554V 0.32 tolerated(0.14) benign(0.072) TCGA-DU-6392-01 17 78090861 78090861 G A GAA Missense_Mutation p.E762K 0.24 tolerated(0.46) benign(0.009) TCGA-DU-6392-01 17 78092019 78092019 C T GAA Missense_Mutation p.R837C 0.30 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 17 78092152 78092152 G T GAA Missense_Mutation p.R881M 0.10 tolerated(0.11) benign(0.004) TCGA-DU-6392-01 17 78109893 78109893 C T EIF4A3 Missense_Mutation p.A377T 0.42 deleterious(0.01) benign(0.363) TCGA-DU-6392-01 17 78163620 78163620 C T CARD14 Silent p.R304R 0.32 TCGA-DU-6392-01 17 78237423 78237423 G A RNF213 5'UTR 0.38 TCGA-DU-6392-01 17 78237505 78237505 G A RNF213 Missense_Mutation p.V9I 0.38 benign(0.006) TCGA-DU-6392-01 17 7827318 7827318 G A KCNAB3 Nonsense_Mutation p.R299* 0.41 TCGA-DU-6392-01 17 78314123 78314123 G C RNF213 Missense_Mutation p.V1986L 0.34 possibly_damaging(0.746) TCGA-DU-6392-01 17 78317077 78317077 G A RNF213 Silent p.A2045A 0.50 TCGA-DU-6392-01 17 78319744 78319744 C T RNF213 Missense_Mutation p.R2537C 0.30 benign(0.42) TCGA-DU-6392-01 17 78321958 78321958 C A RNF213 Missense_Mutation p.L3275M 0.12 probably_damaging(0.999) TCGA-DU-6392-01 17 78327925 78327925 T C RNF213 Missense_Mutation p.V3562A 0.11 benign(0.001) TCGA-DU-6392-01 17 7842843 7842843 C T CNTROB Nonsense_Mutation p.Q314* 0.27 TCGA-DU-6392-01 17 78444684 78444684 C T NPTX1 Missense_Mutation p.A410T 0.32 tolerated(0.41) benign(0.052) TCGA-DU-6392-01 17 78445556 78445556 G A NPTX1 Silent p.G351G 0.24 TCGA-DU-6392-01 17 7849174 7849174 C T CNTROB Silent p.D621D 0.29 TCGA-DU-6392-01 17 78866649 78866649 A G RPTOR Missense_Mutation p.N741S 0.49 tolerated(0.34) benign(0.013) TCGA-DU-6392-01 17 78971109 78971109 G A CHMP6 Missense_Mutation p.A155T 0.35 tolerated(0.06) possibly_damaging(0.903) TCGA-DU-6392-01 17 78971129 78971129 C T CHMP6 Silent p.S161S 0.76 TCGA-DU-6392-01 17 79077707 79077707 C T BAIAP2 Missense_Mutation p.R289W 0.35 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 17 79080582 79080582 C A BAIAP2 Missense_Mutation p.L459M 0.24 tolerated(0.1) probably_damaging(0.986) TCGA-DU-6392-01 17 79093214 79093214 C T AATK Silent p.T1350T 0.21 TCGA-DU-6392-01 17 79093232 79093232 C T AATK Silent p.T1344T 0.30 TCGA-DU-6392-01 17 79165000 79165000 C T AZI1 Missense_Mutation p.E920K 0.47 deleterious(0.02) probably_damaging(0.95) TCGA-DU-6392-01 17 79166385 79166385 G A AZI1 Missense_Mutation p.A813V 0.64 tolerated(0.07) benign(0.14) TCGA-DU-6392-01 17 79205581 79205581 G A ENTHD2 Intron 0.37 TCGA-DU-6392-01 17 79517694 79517694 G T C17orf70 Missense_Mutation p.H276N 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 17 79638824 79638824 C T CCDC137 Missense_Mutation p.A183V 0.27 tolerated(0.1) benign(0.041) TCGA-DU-6392-01 17 79654062 79654062 C T HGS Silent p.G76G 0.35 TCGA-DU-6392-01 17 79667739 79667739 G T HGS Missense_Mutation p.Q677H 0.10 tolerated(0.17) probably_damaging(0.948) TCGA-DU-6392-01 17 79792281 79792281 G A PPP1R27 Intron 0.38 TCGA-DU-6392-01 17 79803050 79803050 G A P4HB Silent p.S472S 0.48 TCGA-DU-6392-01 17 7983639 7983639 A G AC129492.6 Missense_Mutation p.D107G 0.28 benign(0.024) TCGA-DU-6392-01 17 79872022 79872022 G T SIRT7 Missense_Mutation p.L280I 0.27 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 17 79880778 79880778 G A MAFG Silent p.Y64Y 0.38 TCGA-DU-6392-01 17 79916837 79916837 G A NOTUM Silent p.N169N 0.35 TCGA-DU-6392-01 17 79970085 79970085 C T ASPSCR1 Intron 0.30 TCGA-DU-6392-01 17 79983272 79983272 G A LRRC45 Missense_Mutation p.V184I 0.29 tolerated(1) benign(0.001) TCGA-DU-6392-01 17 80015926 80015926 G A DUS1L 3'UTR 0.31 TCGA-DU-6392-01 17 80045217 80045217 C T FASN Silent p.L1069L 0.32 TCGA-DU-6392-01 17 80045228 80045228 G A FASN Silent p.L1066L 0.15 TCGA-DU-6392-01 17 80053284 80053284 G A FASN Silent p.F64F 0.29 TCGA-DU-6392-01 17 80136450 80136450 G A CCDC57 Missense_Mutation p.A469V 0.32 tolerated(0.5) benign(0.008) TCGA-DU-6392-01 17 80141804 80141804 G A CCDC57 Missense_Mutation p.R353C 0.10 deleterious(0.01) benign(0.221) TCGA-DU-6392-01 17 80211027 80211027 G T CSNK1D Missense_Mutation p.L144M 0.43 tolerated_low_confidence(0.21) possibly_damaging(0.86) TCGA-DU-6392-01 17 80273150 80273150 G T CD7 3'UTR 0.48 TCGA-DU-6392-01 17 80274543 80274543 C A CD7 Nonsense_Mutation p.E133* 0.11 TCGA-DU-6392-01 17 8044269 8044269 T C PER1 3'UTR 0.12 TCGA-DU-6392-01 17 8053349 8053349 C T PER1 Missense_Mutation p.G157S 0.35 tolerated(0.07) probably_damaging(0.994) TCGA-DU-6392-01 17 80559225 80559225 G A FOXK2 Silent p.S611S 0.31 TCGA-DU-6392-01 17 80684939 80684939 G A FN3KRP Silent p.E274E 0.41 TCGA-DU-6392-01 17 80739561 80739561 G T TBCD Missense_Mutation p.Q245H 0.09 tolerated(0.09) benign(0.026) TCGA-DU-6392-01 17 80788324 80788324 G A ZNF750 Silent p.C622C 0.31 TCGA-DU-6392-01 17 80788577 80788577 G A ZNF750 Missense_Mutation p.A538V 0.09 tolerated(0.58) benign(0.005) TCGA-DU-6392-01 17 80885151 80885151 G A TBCD Missense_Mutation p.G854D 0.37 tolerated(0.66) benign(0.002) TCGA-DU-6392-01 17 81043069 81043069 G T METRNL Missense_Mutation p.Q142H 0.17 tolerated(0.68) benign(0.003) TCGA-DU-6392-01 17 8131841 8131841 G A CTC1 Missense_Mutation p.P1165L 0.05 deleterious(0) probably_damaging(0.972) TCGA-DU-6392-01 17 8141404 8141404 C T CTC1 Missense_Mutation p.V198I 0.38 tolerated(0.37) benign(0.011) TCGA-DU-6392-01 17 8159164 8159164 C T PFAS Missense_Mutation p.R206C 0.26 deleterious(0.01) benign(0.002) TCGA-DU-6392-01 17 8169287 8169287 C T PFAS Missense_Mutation p.P885S 0.31 tolerated(0.58) benign(0.098) TCGA-DU-6392-01 17 8170106 8170106 G A PFAS Missense_Mutation p.V953M 0.51 deleterious(0.01) possibly_damaging(0.869) TCGA-DU-6392-01 17 8363388 8363388 C A NDEL1 Missense_Mutation p.S285Y 0.07 deleterious(0.01) benign(0.357) TCGA-DU-6392-01 17 8415869 8415869 A G MYH10 Missense_Mutation p.L951S 0.38 possibly_damaging(0.686) TCGA-DU-6392-01 17 8508150 8508150 G T MYH10 Missense_Mutation p.L166I 0.22 probably_damaging(0.995) TCGA-DU-6392-01 17 8702189 8702189 G T MFSD6L Missense_Mutation p.L84M 0.32 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 17 8702265 8702265 G A MFSD6L Silent p.I58I 0.48 TCGA-DU-6392-01 17 8736349 8736349 C T PIK3R6 Missense_Mutation p.R220H 0.55 tolerated(0.18) benign(0.001) TCGA-DU-6392-01 17 8736358 8736358 C T PIK3R6 Missense_Mutation p.S217N 0.33 tolerated(0.49) benign(0.179) TCGA-DU-6392-01 17 9532104 9532104 G A WDR16 Missense_Mutation p.D381N 0.30 tolerated(0.2) benign(0.059) TCGA-DU-6392-01 17 9632095 9632095 G T USP43 Missense_Mutation p.G1054C 0.21 deleterious(0) probably_damaging(0.928) TCGA-DU-6392-01 17 9632155 9632155 C T USP43 Missense_Mutation p.R1074C 0.46 deleterious(0) probably_damaging(0.943) TCGA-DU-6392-01 17 9729552 9729552 C T GLP2R Silent p.L58L 0.09 TCGA-DU-6392-01 17 9801418 9801418 G A RCVRN Silent p.N199N 0.41 TCGA-DU-6392-01 18 10540398 10540398 T C NAPG Splice_Site p.X169_splice 0.53 TCGA-DU-6392-01 18 10550152 10550152 C A NAPG Missense_Mutation p.P292T 0.38 tolerated(0.67) benign(0) TCGA-DU-6392-01 18 11872382 11872382 A G GNAL Missense_Mutation p.T383A 0.10 tolerated(0.07) benign(0.338) TCGA-DU-6392-01 18 12325589 12325589 G A TUBB6 Missense_Mutation p.M267I 0.37 tolerated_low_confidence(0.07) possibly_damaging(0.897) TCGA-DU-6392-01 18 12358835 12358835 C T AFG3L2 Missense_Mutation p.G287E 0.40 deleterious(0.01) possibly_damaging(0.852) TCGA-DU-6392-01 18 12429359 12429359 C A SLMO1 Missense_Mutation p.A159D 0.53 deleterious(0) possibly_damaging(0.861) TCGA-DU-6392-01 18 12785791 12785791 A G PTPN2 3'UTR 0.50 TCGA-DU-6392-01 18 12840713 12840713 C A PTPN2 Intron 0.17 TCGA-DU-6392-01 18 12948202 12948202 G A SEH1L Missense_Mutation p.A28T 0.42 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 18 12951898 12951898 C A SEH1L Missense_Mutation p.S52R 0.09 tolerated(0.07) benign(0.111) TCGA-DU-6392-01 18 13052933 13052933 C A CEP192 Silent p.S1011S 0.11 TCGA-DU-6392-01 18 13056133 13056133 G T CEP192 Missense_Mutation p.A1182S 0.36 tolerated(0.41) benign(0.065) TCGA-DU-6392-01 18 13056632 13056632 C A CEP192 Missense_Mutation p.P1348H 0.42 deleterious(0) probably_damaging(0.971) TCGA-DU-6392-01 18 13095650 13095650 G T CEP192 Nonsense_Mutation p.E2135* 0.29 TCGA-DU-6392-01 18 13103524 13103524 C T CEP192 Silent p.L2296L 0.09 TCGA-DU-6392-01 18 13103558 13103558 C A CEP192 Missense_Mutation p.L2308M 0.34 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 18 13621168 13621168 G A LDLRAD4 Missense_Mutation p.M78I 0.39 deleterious(0.03) probably_damaging(0.956) TCGA-DU-6392-01 18 13681863 13681863 C T FAM210A Missense_Mutation p.D72N 0.40 tolerated(0.46) benign(0.001) TCGA-DU-6392-01 18 13826657 13826657 G A MC5R Missense_Mutation p.R298H 0.40 deleterious(0.01) possibly_damaging(0.908) TCGA-DU-6392-01 18 13884765 13884765 G A MC2R Silent p.C251C 0.31 TCGA-DU-6392-01 18 14478148 14478148 G T CXADRP3 RNA 0.47 TCGA-DU-6392-01 18 14752923 14752923 C T ANKRD30B Missense_Mutation p.T141M 0.50 deleterious(0) possibly_damaging(0.847) TCGA-DU-6392-01 18 19153731 19153731 C T ESCO1 Silent p.Q358Q 0.07 TCGA-DU-6392-01 18 19426999 19426999 G A MIB1 Missense_Mutation p.R769Q 0.39 tolerated(0.14) benign(0.022) TCGA-DU-6392-01 18 19751405 19751405 G A GATA6 Silent p.A100A 0.43 TCGA-DU-6392-01 18 197620 197620 C T USP14 Missense_Mutation p.A200V 0.24 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 18 20576405 20576405 G A RBBP8 Missense_Mutation p.V670I 0.10 tolerated(1) benign(0.002) TCGA-DU-6392-01 18 20837319 20837319 C T CABLES1 Silent p.V630V 0.47 TCGA-DU-6392-01 18 20950206 20950206 C T TMEM241 Silent p.Q168Q 0.31 TCGA-DU-6392-01 18 21044578 21044578 G A RIOK3 Missense_Mutation p.A177T 0.16 tolerated(0.13) benign(0.313) TCGA-DU-6392-01 18 21053408 21053408 G T RIOK3 Missense_Mutation p.K277N 0.11 tolerated(0.49) benign(0.007) TCGA-DU-6392-01 18 21083594 21083594 G T C18orf8 Missense_Mutation p.E4D 0.17 tolerated(0.86) possibly_damaging(0.77) TCGA-DU-6392-01 18 21095831 21095831 G T C18orf8 Missense_Mutation p.E140D 0.27 tolerated(0.15) benign(0.001) TCGA-DU-6392-01 18 21116710 21116710 C T NPC1 Missense_Mutation p.A1058T 0.28 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 18 21209871 21209871 C A ANKRD29 Missense_Mutation p.L158F 0.26 tolerated(0.15) benign(0.403) TCGA-DU-6392-01 18 21487720 21487720 G A LAMA3 Missense_Mutation p.G2279D 0.38 benign(0.009) TCGA-DU-6392-01 18 21492725 21492725 G A LAMA3 Silent p.L2403L 0.34 TCGA-DU-6392-01 18 21745032 21745032 G A OSBPL1A Missense_Mutation p.T916M 0.46 deleterious(0.05) probably_damaging(0.911) TCGA-DU-6392-01 18 21946860 21946860 C T OSBPL1A Missense_Mutation p.R93Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 18 21957415 21957415 A G OSBPL1A Missense_Mutation p.M28T 0.29 tolerated(0.54) benign(0.005) TCGA-DU-6392-01 18 22642644 22642644 A C ZNF521 3'UTR 0.24 TCGA-DU-6392-01 18 22805397 22805397 G A ZNF521 Nonsense_Mutation p.R829* 0.38 TCGA-DU-6392-01 18 23847570 23847570 A G TAF4B Missense_Mutation p.K194E 0.37 tolerated(0.3) benign(0.044) TCGA-DU-6392-01 18 23866114 23866114 C T TAF4B Missense_Mutation p.S414F 0.40 deleterious(0.01) possibly_damaging(0.868) TCGA-DU-6392-01 18 24436260 24436260 G T AQP4 Missense_Mutation p.P296H 0.10 deleterious(0) possibly_damaging(0.778) TCGA-DU-6392-01 18 24436384 24436384 C A AQP4 Missense_Mutation p.D255Y 0.20 deleterious(0.02) possibly_damaging(0.59) TCGA-DU-6392-01 18 24497012 24497012 G A CHST9 Silent p.F181F 0.31 TCGA-DU-6392-01 18 25565020 25565020 G A CDH2 Missense_Mutation p.A718V 0.45 deleterious(0) benign(0.359) TCGA-DU-6392-01 18 25572622 25572622 G A CDH2 Silent p.V447V 0.11 TCGA-DU-6392-01 18 25583001 25583001 G A CDH2 Missense_Mutation p.T327I 0.40 deleterious(0) benign(0.285) TCGA-DU-6392-01 18 25727734 25727734 A T CDH2 Silent p.A25A 0.28 TCGA-DU-6392-01 18 2578944 2578944 C T NDC80 Silent p.S165S 0.12 TCGA-DU-6392-01 18 265475 265475 A C THOC1 Missense_Mutation p.F37C 0.67 tolerated(0.12) probably_damaging(0.979) TCGA-DU-6392-01 18 2666211 2666211 A G SMCHD1 Missense_Mutation p.E81G 0.33 tolerated(0.12) benign(0.146) TCGA-DU-6392-01 18 2738483 2738483 G A SMCHD1 Missense_Mutation p.R1122H 0.23 tolerated(0.3) probably_damaging(0.988) TCGA-DU-6392-01 18 2762115 2762115 G A SMCHD1 Missense_Mutation p.V1483I 0.24 tolerated(0.15) benign(0.016) TCGA-DU-6392-01 18 28576966 28576966 C A DSC3 Missense_Mutation p.G762C 0.10 deleterious(0) possibly_damaging(0.815) TCGA-DU-6392-01 18 28584320 28584320 C T DSC3 Missense_Mutation p.R634H 0.44 tolerated(0.53) benign(0.051) TCGA-DU-6392-01 18 28588261 28588261 G A DSC3 Silent p.P498P 0.42 TCGA-DU-6392-01 18 28588282 28588282 G A DSC3 Silent p.N491N 0.44 TCGA-DU-6392-01 18 28720060 28720060 C T DSC1 Missense_Mutation p.E489K 0.38 tolerated(1) benign(0.052) TCGA-DU-6392-01 18 28725648 28725648 C A DSC1 Missense_Mutation p.D289Y 0.32 deleterious(0.04) probably_damaging(0.954) TCGA-DU-6392-01 18 2885065 2885065 G T EMILIN2 Missense_Mutation p.G121C 0.31 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 18 28935225 28935225 C T DSG1 Silent p.H1022H 0.24 TCGA-DU-6392-01 18 28993015 28993015 T G DSG4 Silent p.A879A 0.20 TCGA-DU-6392-01 18 29104816 29104816 G A DSG2 Missense_Mutation p.A327T 0.36 tolerated(1) benign(0.012) TCGA-DU-6392-01 18 29205521 29205521 C T B4GALT6 3'UTR 0.33 TCGA-DU-6392-01 18 29205652 29205652 T G B4GALT6 Missense_Mutation p.K358N 0.44 tolerated(0.54) benign(0.001) TCGA-DU-6392-01 18 2940711 2940711 C A LPIN2 Splice_Site p.X197_splice 0.24 TCGA-DU-6392-01 18 29419357 29419357 G A TRAPPC8 Missense_Mutation p.P1301S 0.44 deleterious(0.01) possibly_damaging(0.854) TCGA-DU-6392-01 18 29429587 29429587 G A TRAPPC8 Missense_Mutation p.A1226V 0.28 tolerated(0.51) benign(0.001) TCGA-DU-6392-01 18 29454613 29454613 C A TRAPPC8 Missense_Mutation p.G595C 0.31 deleterious(0) possibly_damaging(0.515) TCGA-DU-6392-01 18 29488893 29488893 C A TRAPPC8 Missense_Mutation p.D316Y 0.15 deleterious(0.01) possibly_damaging(0.696) TCGA-DU-6392-01 18 29691857 29691857 G A RNF138 Missense_Mutation p.G84D 0.38 deleterious(0) possibly_damaging(0.801) TCGA-DU-6392-01 18 29793158 29793158 C T MEP1B Silent p.R405R 0.36 TCGA-DU-6392-01 18 29848396 29848396 C T GAREM Missense_Mutation p.S690N 0.15 tolerated(0.54) benign(0.001) TCGA-DU-6392-01 18 29867539 29867539 G A GAREM Missense_Mutation p.R341W 0.37 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 18 29867591 29867591 G A GAREM Silent p.V323V 0.33 TCGA-DU-6392-01 18 29972987 29972987 C A GAREM Nonsense_Mutation p.E45* 0.13 TCGA-DU-6392-01 18 30091781 30091782 - T WBP11P1 RNA 0.33 TCGA-DU-6392-01 18 30092242 30092242 C T WBP11P1 RNA 0.38 TCGA-DU-6392-01 18 30254669 30254669 G T KLHL14 Missense_Mutation p.P613H 0.09 deleterious(0.02) probably_damaging(0.99) TCGA-DU-6392-01 18 30260222 30260222 G A KLHL14 Nonsense_Mutation p.R500* 0.44 TCGA-DU-6392-01 18 30260482 30260482 C A KLHL14 Missense_Mutation p.S440I 0.20 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 18 31320060 31320060 C T ASXL3 Missense_Mutation p.P898S 0.24 benign(0.004) TCGA-DU-6392-01 18 31325549 31325549 G A ASXL3 Missense_Mutation p.V1913I 0.25 benign(0.009) TCGA-DU-6392-01 18 3151731 3151731 C T MYOM1 Missense_Mutation p.V602M 0.11 deleterious(0) probably_damaging(0.97) TCGA-DU-6392-01 18 31684026 31684026 G A NOL4 Silent p.N208N 0.43 TCGA-DU-6392-01 18 31685089 31685089 C T NOL4 Silent p.A150A 0.37 TCGA-DU-6392-01 18 32345949 32345949 G A DTNA Missense_Mutation p.R31Q 0.38 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 18 32409143 32409143 C T DTNA Intron 0.37 TCGA-DU-6392-01 18 3255931 3255931 C T MYL12A 3'UTR 0.44 TCGA-DU-6392-01 18 3277898 3277898 G A MYL12B Missense_Mutation p.R161H 0.31 tolerated(0.36) benign(0.004) TCGA-DU-6392-01 18 32822408 32822409 - T ZNF397 5'UTR 0.30 TCGA-DU-6392-01 18 32837951 32837951 G A ZSCAN30 Intron 0.45 TCGA-DU-6392-01 18 32887471 32887471 C A ZNF271 RNA 0.22 TCGA-DU-6392-01 18 32919925 32919925 G A ZNF24 Nonsense_Mutation p.R146* 0.44 TCGA-DU-6392-01 18 33060526 33060526 C T INO80C Missense_Mutation p.G89D 0.36 deleterious(0) probably_damaging(0.974) TCGA-DU-6392-01 18 33704581 33704581 C T SLC39A6 Missense_Mutation p.C291Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 18 33795492 33795492 G A MOCOS Missense_Mutation p.C450Y 0.30 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 18 33800180 33800180 G A MOCOS Missense_Mutation p.G654R 0.28 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 18 34092484 34092484 C T FHOD3 Silent p.N163N 0.23 TCGA-DU-6392-01 18 34310638 34310638 G T FHOD3 Missense_Mutation p.E974D 0.25 deleterious(0) possibly_damaging(0.832) TCGA-DU-6392-01 18 34322791 34322791 C T FHOD3 Missense_Mutation p.A1109V 0.35 deleterious(0) probably_damaging(0.961) TCGA-DU-6392-01 18 34324063 34324063 G A FHOD3 Silent p.S1141S 0.42 TCGA-DU-6392-01 18 34326954 34326954 G T FHOD3 Missense_Mutation p.R1188I 0.38 deleterious(0) possibly_damaging(0.76) TCGA-DU-6392-01 18 34376747 34376747 G T TPGS2 3'UTR 0.47 TCGA-DU-6392-01 18 34415334 34415334 G T KIAA1328 Nonsense_Mutation p.E78* 0.33 TCGA-DU-6392-01 18 3457843 3457843 G A TGIF1 Missense_Mutation p.D371N 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 18 34854466 34854466 C T CELF4 Intron 0.50 TCGA-DU-6392-01 18 3582061 3582061 G T DLGAP1 Missense_Mutation p.L593M 0.51 deleterious(0) possibly_damaging(0.736) TCGA-DU-6392-01 18 3729277 3729277 C T DLGAP1 Missense_Mutation p.M483I 0.20 tolerated(0.14) benign(0.01) TCGA-DU-6392-01 18 39607487 39607487 G T PIK3C3 Missense_Mutation p.R522I 0.11 tolerated(0.33) benign(0.392) TCGA-DU-6392-01 18 39618800 39618800 C T PIK3C3 Missense_Mutation p.T675I 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 18 42281508 42281508 G A SETBP1 Missense_Mutation p.G66E 0.34 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 18 42532230 42532230 C A SETBP1 Silent p.T975T 0.37 TCGA-DU-6392-01 18 42643159 42643159 C T SETBP1 Silent p.H1429H 0.45 TCGA-DU-6392-01 18 43217042 43217042 G A SLC14A2 Silent p.L246L 0.09 TCGA-DU-6392-01 18 43253759 43253759 C T SLC14A2 Missense_Mutation p.T830M 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 18 43481006 43481006 G A EPG5 Missense_Mutation p.T1534I 0.47 tolerated(0.59) benign(0.075) TCGA-DU-6392-01 18 43481096 43481096 T G EPG5 Missense_Mutation p.E1504A 0.22 deleterious(0.02) benign(0.051) TCGA-DU-6392-01 18 43523147 43523147 C G EPG5 Missense_Mutation p.K641N 0.26 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 18 43524058 43524058 G T EPG5 Missense_Mutation p.L569I 0.39 deleterious(0.02) probably_damaging(0.953) TCGA-DU-6392-01 18 43619910 43619910 T C PSTPIP2 Intron 0.38 TCGA-DU-6392-01 18 43667331 43667331 G A ATP5A1 Silent p.I309I 0.44 TCGA-DU-6392-01 18 43668133 43668133 A G ATP5A1 Silent p.V247V 0.38 TCGA-DU-6392-01 18 43698240 43698240 A G HAUS1 Missense_Mutation p.D100G 0.45 tolerated(0.11) possibly_damaging(0.864) TCGA-DU-6392-01 18 44027530 44027530 C A RNF165 Missense_Mutation p.L164I 0.32 deleterious(0.05) benign(0.232) TCGA-DU-6392-01 18 44027652 44027652 G T RNF165 Missense_Mutation p.Q204H 0.39 tolerated(0.19) possibly_damaging(0.646) TCGA-DU-6392-01 18 44260099 44260099 C T ST8SIA5 Missense_Mutation p.G346D 0.41 probably_damaging(0.999) TCGA-DU-6392-01 18 44260279 44260279 G A ST8SIA5 Missense_Mutation p.S286L 0.33 possibly_damaging(0.625) TCGA-DU-6392-01 18 44336495 44336495 G A ST8SIA5 5'UTR 0.24 TCGA-DU-6392-01 18 44559863 44559863 C A TCEB3B Missense_Mutation p.Q591H 0.09 deleterious(0.02) benign(0.218) TCGA-DU-6392-01 18 44560997 44560997 G A TCEB3B Silent p.G213G 0.33 TCGA-DU-6392-01 18 44589659 44589659 G A KATNAL2 Missense_Mutation p.R146Q 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-DU-6392-01 18 45374854 45374854 C A SMAD2 Missense_Mutation p.R330M 0.09 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 18 45396887 45396887 C A SMAD2 Missense_Mutation p.Q95H 0.07 tolerated_low_confidence(0.12) benign(0.155) TCGA-DU-6392-01 18 45556204 45556204 G A ZBTB7C Silent p.F429F 0.39 TCGA-DU-6392-01 18 45566387 45566387 C T ZBTB7C Silent p.Q364Q 0.31 TCGA-DU-6392-01 18 45566687 45566687 G A ZBTB7C Silent p.F264F 0.24 TCGA-DU-6392-01 18 45567396 45567396 C T ZBTB7C Missense_Mutation p.R28Q 0.30 deleterious(0) probably_damaging(0.948) TCGA-DU-6392-01 18 46284702 46284702 C T CTIF Missense_Mutation p.R333C 0.10 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-DU-6392-01 18 46284706 46284706 T C CTIF Missense_Mutation p.I334T 0.34 tolerated_low_confidence(0.4) benign(0.001) TCGA-DU-6392-01 18 46448197 46448197 G A SMAD7 Missense_Mutation p.L276F 0.36 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 18 46476188 46476188 C T SMAD7 Missense_Mutation p.E203K 0.33 tolerated(0.26) benign(0.256) TCGA-DU-6392-01 18 46570554 46570554 G A DYM Silent p.F627F 0.32 TCGA-DU-6392-01 18 46956757 46956757 G A DYM Missense_Mutation p.S3L 0.40 deleterious(0.04) benign(0.129) TCGA-DU-6392-01 18 46956785 46956785 T A DYM 5'UTR 0.11 TCGA-DU-6392-01 18 47009974 47009974 T G C18orf32 Missense_Mutation p.K49Q 0.11 tolerated(0.52) benign(0.042) TCGA-DU-6392-01 18 47010026 47010026 G A RPL17-C18orf32 Missense_Mutation p.S208L 0.37 tolerated_low_confidence(1) benign(0) TCGA-DU-6392-01 18 47107794 47107794 A G LIPG Missense_Mutation p.E268G 0.36 deleterious(0) possibly_damaging(0.794) TCGA-DU-6392-01 18 47310300 47310300 G A ACAA2 Missense_Mutation p.R371C 0.33 deleterious(0) benign(0.168) TCGA-DU-6392-01 18 47329192 47329192 G T ACAA2 Silent p.P16P 0.12 TCGA-DU-6392-01 18 47389692 47389692 C T MYO5B Silent p.P1283P 0.34 TCGA-DU-6392-01 18 47431075 47431075 G T MYO5B Silent p.T846T 0.12 TCGA-DU-6392-01 18 47479645 47479645 G A MYO5B Silent p.I579I 0.36 TCGA-DU-6392-01 18 47480773 47480773 C A MYO5B Missense_Mutation p.Q526H 0.26 deleterious(0.01) benign(0.049) TCGA-DU-6392-01 18 47809259 47809259 G A CXXC1 Missense_Mutation p.R601W 0.40 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 18 47809307 47809307 G A CXXC1 Missense_Mutation p.R585C 0.13 deleterious(0.04) benign(0.166) TCGA-DU-6392-01 18 47917508 47917508 G A SKA1 Missense_Mutation p.R155H 0.38 deleterious(0.02) possibly_damaging(0.638) TCGA-DU-6392-01 18 50450170 50450170 C A DCC Missense_Mutation p.S264Y 0.43 tolerated(0.11) probably_damaging(0.997) TCGA-DU-6392-01 18 50592436 50592436 A G DCC Missense_Mutation p.I387M 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 18 50683750 50683750 C A DCC Missense_Mutation p.P429H 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 18 51715253 51715253 C A MBD2 Missense_Mutation p.Q277H 0.06 deleterious(0) probably_damaging(0.94) TCGA-DU-6392-01 18 51818404 51818404 G T POLI Missense_Mutation p.S467I 0.32 tolerated(0.1) benign(0.14) TCGA-DU-6392-01 18 51820869 51820869 G A POLI 3'UTR 0.29 TCGA-DU-6392-01 18 52586565 52586565 C A CCDC68 Missense_Mutation p.Q242H 0.12 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 18 52895571 52895571 G T TCF4 Missense_Mutation p.A736D 0.37 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 18 5291622 5291622 G A ZBTB14 Silent p.L195L 0.34 TCGA-DU-6392-01 18 54293477 54293477 C A TXNL1 Intron 0.33 TCGA-DU-6392-01 18 54398622 54398622 G T WDR7 Missense_Mutation p.D595Y 0.29 deleterious(0) probably_damaging(0.934) TCGA-DU-6392-01 18 54424107 54424107 T C WDR7 Silent p.D761D 0.10 TCGA-DU-6392-01 18 54629713 54629713 C T WDR7 Missense_Mutation p.R1373C 0.46 deleterious(0) probably_damaging(0.977) TCGA-DU-6392-01 18 55328429 55328429 G T ATP8B1 Missense_Mutation p.A895D 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 18 55351303 55351303 G A ATP8B1 Missense_Mutation p.A532V 0.52 deleterious(0) possibly_damaging(0.582) TCGA-DU-6392-01 18 56196431 56196431 G T ALPK2 Missense_Mutation p.P1798H 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 18 56202619 56202619 G T ALPK2 Silent p.P1600P 0.31 TCGA-DU-6392-01 18 56205160 56205160 T C ALPK2 Silent p.P753P 0.10 TCGA-DU-6392-01 18 56376782 56376782 A G MALT1 Silent p.L274L 0.41 TCGA-DU-6392-01 18 56586058 56586058 G T ZNF532 Missense_Mutation p.G180V 0.16 tolerated(0.14) possibly_damaging(0.616) TCGA-DU-6392-01 18 56586209 56586209 C A ZNF532 Missense_Mutation p.S230R 0.08 tolerated(0.22) benign(0.009) TCGA-DU-6392-01 18 56586416 56586416 G A ZNF532 Silent p.P299P 0.39 TCGA-DU-6392-01 18 56586803 56586803 C T ZNF532 Silent p.V428V 0.27 TCGA-DU-6392-01 18 56587422 56587422 T C ZNF532 Missense_Mutation p.Y635H 0.42 deleterious(0.05) probably_damaging(0.982) TCGA-DU-6392-01 18 56646333 56646333 C T ZNF532 Missense_Mutation p.S1066L 0.30 deleterious(0) probably_damaging(0.928) TCGA-DU-6392-01 18 57134065 57134065 G T CCBE1 Silent p.T153T 0.07 TCGA-DU-6392-01 18 58039275 58039275 A G MC4R Missense_Mutation p.V103A 0.35 tolerated(0.09) benign(0.017) TCGA-DU-6392-01 18 58039503 58039503 G A MC4R Missense_Mutation p.A27V 0.36 tolerated(0.2) benign(0) TCGA-DU-6392-01 18 59166563 59166563 A G CDH20 Missense_Mutation p.T131A 0.33 deleterious(0.04) benign(0.109) TCGA-DU-6392-01 18 59170288 59170288 C T CDH20 Missense_Mutation p.A255V 0.28 deleterious(0) probably_damaging(0.938) TCGA-DU-6392-01 18 59483782 59483782 C T RNF152 5'UTR 0.16 TCGA-DU-6392-01 18 59947632 59947632 C T KIAA1468 Missense_Mutation p.R1003W 0.28 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 18 60029004 60029004 G T TNFRSF11A Missense_Mutation p.R236S 0.45 deleterious(0) possibly_damaging(0.849) TCGA-DU-6392-01 18 60036460 60036460 G T TNFRSF11A Missense_Mutation p.S437I 0.11 tolerated(0.11) possibly_damaging(0.467) TCGA-DU-6392-01 18 60242354 60242354 T C ZCCHC2 Missense_Mutation p.S1014P 0.43 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 18 60527781 60527781 C A PHLPP1 Missense_Mutation p.F671L 0.17 deleterious(0.05) benign(0.085) TCGA-DU-6392-01 18 60645923 60645923 C T PHLPP1 Silent p.S1471S 0.37 TCGA-DU-6392-01 18 60985307 60985307 G T BCL2 Intron 0.33 TCGA-DU-6392-01 18 61225673 61225673 G T SERPINB12 Intron 0.40 TCGA-DU-6392-01 18 61264593 61264593 C A SERPINB13 Missense_Mutation p.P391H 0.43 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 18 61459678 61459678 G A SERPINB7 Splice_Site p.X73_splice 0.40 TCGA-DU-6392-01 18 61597398 61597398 G T SERPINB10 Nonsense_Mutation p.E204* 0.10 TCGA-DU-6392-01 18 64211990 64211990 T C CDH19 Missense_Mutation p.H309R 0.32 tolerated(0.48) benign(0.049) TCGA-DU-6392-01 18 65181680 65181680 G T DSEL Missense_Mutation p.L66M 0.37 tolerated_low_confidence(0.14) benign(0.018) TCGA-DU-6392-01 18 66381119 66381119 A G TMX3 Missense_Mutation p.V22A 0.41 tolerated(1) benign(0) TCGA-DU-6392-01 18 66564467 66564467 G A CCDC102B Silent p.L355L 0.37 TCGA-DU-6392-01 18 66721309 66721309 C A CCDC102B Missense_Mutation p.L493M 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 18 67563180 67563180 C T CD226 Missense_Mutation p.A162T 0.44 deleterious(0.02) benign(0.003) TCGA-DU-6392-01 18 67725039 67725039 C T RTTN Missense_Mutation p.C1657Y 0.22 tolerated(0.17) benign(0.004) TCGA-DU-6392-01 18 67742591 67742591 T G RTTN Missense_Mutation p.N1521H 0.34 deleterious(0.02) probably_damaging(0.952) TCGA-DU-6392-01 18 67812937 67812937 C T RTTN Missense_Mutation p.A798T 0.38 tolerated(0.06) benign(0.324) TCGA-DU-6392-01 18 678709 678709 G A ENOSF1 Intron 0.09 TCGA-DU-6392-01 18 67992683 67992683 G A SOCS6 Missense_Mutation p.R260H 0.40 tolerated_low_confidence(0.14) benign(0.046) TCGA-DU-6392-01 18 6882228 6882229 - T ARHGAP28 Frame_Shift_Ins p.R305Qfs*42 0.31 TCGA-DU-6392-01 18 691249 691249 C A ENOSF1 Missense_Mutation p.D172Y 0.19 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 18 691268 691268 C T ENOSF1 Silent p.R165R 0.24 TCGA-DU-6392-01 18 6959355 6959355 A G LAMA1 Missense_Mutation p.L2588S 0.08 deleterious(0) probably_damaging(0.949) TCGA-DU-6392-01 18 6961979 6961979 T C LAMA1 Missense_Mutation p.N2473D 0.24 tolerated(0.85) benign(0.019) TCGA-DU-6392-01 18 6993675 6993675 G A LAMA1 Missense_Mutation p.A1658V 0.33 tolerated(0.29) benign(0.013) TCGA-DU-6392-01 18 70417389 70417389 C T NETO1 Silent p.S483S 0.43 TCGA-DU-6392-01 18 7044729 7044729 G A LAMA1 Missense_Mutation p.T323I 0.40 tolerated(0.11) benign(0.314) TCGA-DU-6392-01 18 70451004 70451004 C T NETO1 Missense_Mutation p.M259I 0.37 deleterious(0.03) possibly_damaging(0.696) TCGA-DU-6392-01 18 71815938 71815938 G A TIMM21 5'UTR 0.27 TCGA-DU-6392-01 18 71816003 71816003 G A TIMM21 5'UTR 0.12 TCGA-DU-6392-01 18 71825417 71825417 A G TIMM21 Missense_Mutation p.Y183C 0.12 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 18 72173218 72173218 C T CNDP2 Silent p.S113S 0.30 TCGA-DU-6392-01 18 72178114 72178114 G A CNDP2 Missense_Mutation p.E175K 0.45 tolerated(0.09) benign(0.005) TCGA-DU-6392-01 18 72180853 72180853 G A CNDP2 Missense_Mutation p.A268T 0.43 deleterious(0.01) benign(0.008) TCGA-DU-6392-01 18 72244143 72244143 G A CNDP1 Missense_Mutation p.G294E 0.43 deleterious(0.03) probably_damaging(0.997) TCGA-DU-6392-01 18 72247449 72247449 G A CNDP1 Silent p.P417P 0.30 TCGA-DU-6392-01 18 72913976 72913976 A G ZADH2 Silent p.L177L 0.40 TCGA-DU-6392-01 18 72999467 72999467 C T TSHZ1 Missense_Mutation p.A657V 0.21 tolerated(0.31) benign(0.002) TCGA-DU-6392-01 18 74091873 74091873 G A ZNF516 Silent p.L733L 0.14 TCGA-DU-6392-01 18 743026 743026 G T YES1 Missense_Mutation p.L318I 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 18 74536265 74536265 C T ZNF236 5'UTR 0.35 TCGA-DU-6392-01 18 74607198 74607198 C A ZNF236 Missense_Mutation p.F547L 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 18 74631731 74631731 G T ZNF236 Splice_Site p.X1090_splice 0.19 TCGA-DU-6392-01 18 74637348 74637348 C T ZNF236 Nonsense_Mutation p.R1287* 0.50 TCGA-DU-6392-01 18 76754541 76754541 C T SALL3 Silent p.I850I 0.44 TCGA-DU-6392-01 18 77105535 77105535 G A ATP9B Silent p.L860L 0.44 TCGA-DU-6392-01 18 77797335 77797335 C T RBFA Silent p.Y69Y 0.29 TCGA-DU-6392-01 18 77894587 77894587 C T ADNP2 Nonsense_Mutation p.Q431* 0.27 TCGA-DU-6392-01 18 77895757 77895757 C T ADNP2 Missense_Mutation p.P821S 0.51 deleterious(0.05) possibly_damaging(0.833) TCGA-DU-6392-01 18 77918260 77918260 G A PARD6G Silent p.R175R 0.40 TCGA-DU-6392-01 18 7888151 7888151 G A PTPRM Missense_Mutation p.A82T 0.31 deleterious(0.01) benign(0.17) TCGA-DU-6392-01 18 8069839 8069839 C T PTPRM Nonsense_Mutation p.R430* 0.32 TCGA-DU-6392-01 18 8783532 8783532 A G SOGA2 Missense_Mutation p.D141G 0.38 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 18 8824752 8824752 T G SOGA2 Missense_Mutation p.F1082V 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 18 909769 909769 G A ADCYAP1 3'UTR 0.45 TCGA-DU-6392-01 18 9255390 9255390 C T ANKRD12 Missense_Mutation p.L709F 0.53 tolerated_low_confidence(0.06) benign(0.197) TCGA-DU-6392-01 18 9263874 9263874 C T ANKRD12 Silent p.H1917H 0.41 TCGA-DU-6392-01 18 9522280 9522280 G T RALBP1 Nonsense_Mutation p.E276* 0.11 TCGA-DU-6392-01 18 9559476 9559476 C T PPP4R1 Missense_Mutation p.G657R 0.40 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 18 9887909 9887909 C T TXNDC2 Missense_Mutation p.T478M 0.17 tolerated(0.14) benign(0.396) TCGA-DU-6392-01 19 10085059 10085059 C T COL5A3 Missense_Mutation p.R1123Q 0.29 probably_damaging(0.995) TCGA-DU-6392-01 19 10124164 10124164 G T RDH8 Missense_Mutation p.E17D 0.13 tolerated_low_confidence(0.34) benign(0.01) TCGA-DU-6392-01 19 10169550 10169550 C T C3P1 RNA 0.19 TCGA-DU-6392-01 19 10200023 10200023 A G C19orf66 Intron 0.31 TCGA-DU-6392-01 19 10206720 10206720 G C ANGPTL6 Missense_Mutation p.Q174E 0.52 deleterious(0) benign(0.42) TCGA-DU-6392-01 19 10251517 10251517 G T DNMT1 Missense_Mutation p.L1155M 0.38 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 19 10254557 10254557 G T DNMT1 Missense_Mutation p.L1001M 0.14 deleterious(0.05) possibly_damaging(0.785) TCGA-DU-6392-01 19 10265644 10265644 A G DNMT1 Silent p.I527I 0.42 TCGA-DU-6392-01 19 10265689 10265689 C T DNMT1 Silent p.A512A 0.33 TCGA-DU-6392-01 19 10270410 10270410 G A DNMT1 Silent p.L402L 0.40 TCGA-DU-6392-01 19 10277310 10277310 G A DNMT1 Silent p.G285G 0.48 TCGA-DU-6392-01 19 10369091 10369091 C T MRPL4 Silent p.D185D 0.40 TCGA-DU-6392-01 19 1037633 1037633 A G CNN2 Missense_Mutation p.T222A 0.07 tolerated(0.1) benign(0.015) TCGA-DU-6392-01 19 10395205 10395205 G A ICAM1 Missense_Mutation p.G351D 0.38 tolerated(0.08) possibly_damaging(0.773) TCGA-DU-6392-01 19 10398513 10398513 C T ICAM4 Missense_Mutation p.R207C 0.44 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-DU-6392-01 19 10405101 10405101 C T ICAM5 Missense_Mutation p.T672I 0.38 tolerated(0.09) possibly_damaging(0.556) TCGA-DU-6392-01 19 1043735 1043735 C A ABCA7 Silent p.T314T 0.39 TCGA-DU-6392-01 19 10463181 10463181 C A TYK2 Missense_Mutation p.D1083Y 0.44 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 19 1046330 1046330 G A ABCA7 Missense_Mutation p.R516H 0.08 deleterious(0.02) benign(0.064) TCGA-DU-6392-01 19 10463722 10463722 C T TYK2 Missense_Mutation p.R1027H 0.34 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 19 10465199 10465199 C A TYK2 Missense_Mutation p.D902Y 0.18 deleterious(0.03) probably_damaging(0.97) TCGA-DU-6392-01 19 10502044 10502044 G T CDC37 3'UTR 0.44 TCGA-DU-6392-01 19 10502251 10502251 G A CDC37 Silent p.G371G 0.43 TCGA-DU-6392-01 19 10561606 10561606 G A PDE4A Missense_Mutation p.A258T 0.30 deleterious(0) possibly_damaging(0.66) TCGA-DU-6392-01 19 10600040 10600040 G A KEAP1 Silent p.V512V 0.37 TCGA-DU-6392-01 19 10662938 10662938 A G ATG4D Missense_Mutation p.T394A 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 10675645 10675645 G A KRI1 Silent p.P84P 0.30 TCGA-DU-6392-01 19 10742775 10742775 C A SLC44A2 Missense_Mutation p.L256M 0.07 tolerated(0.18) benign(0.299) TCGA-DU-6392-01 19 10746140 10746140 G T SLC44A2 Missense_Mutation p.K394N 0.17 deleterious(0.02) possibly_damaging(0.665) TCGA-DU-6392-01 19 10781697 10781697 G T ILF3 Missense_Mutation p.K17N 0.26 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 10782100 10782100 G T ILF3 Missense_Mutation p.K100N 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 10792710 10792710 C T ILF3 Missense_Mutation p.R408W 0.14 deleterious(0.02) probably_damaging(0.989) TCGA-DU-6392-01 19 10794150 10794150 G A ILF3 Missense_Mutation p.A599T 0.38 tolerated(0.27) benign(0.029) TCGA-DU-6392-01 19 10794426 10794426 G T ILF3 Nonsense_Mutation p.G660* 0.32 TCGA-DU-6392-01 19 1080929 1080929 G A HMHA1 Missense_Mutation p.V702M 0.29 tolerated(0.19) benign(0.064) TCGA-DU-6392-01 19 10823678 10823678 G A QTRT1 Missense_Mutation p.A341T 0.35 deleterious(0.04) possibly_damaging(0.871) TCGA-DU-6392-01 19 10906768 10906768 G A DNM2 Intron 0.09 TCGA-DU-6392-01 19 10943688 10943688 G A DNM2 3'Flank 0.30 TCGA-DU-6392-01 19 11034337 11034337 G T YIPF2 Missense_Mutation p.P223H 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 19 1106423 1106423 G A GPX4 Missense_Mutation p.V176M 0.23 deleterious(0.03) probably_damaging(0.95) TCGA-DU-6392-01 19 11098592 11098592 C T SMARCA4 Silent p.R370R 0.73 TCGA-DU-6392-01 19 11118620 11118620 C A SMARCA4 Missense_Mutation p.L682M 0.10 benign(0.308) TCGA-DU-6392-01 19 11134247 11134247 G A SMARCA4 Silent p.V971V 0.50 TCGA-DU-6392-01 19 11135027 11135027 C T SMARCA4 Silent p.C998C 0.21 TCGA-DU-6392-01 19 11145688 11145688 C T SMARCA4 Silent p.D1350D 0.50 TCGA-DU-6392-01 19 11150164 11150164 G A SMARCA4 Intron 0.41 TCGA-DU-6392-01 19 11280725 11280725 C T KANK2 Missense_Mutation p.R812H 0.33 tolerated(0.16) probably_damaging(0.998) TCGA-DU-6392-01 19 11287388 11287388 G A KANK2 Silent p.A550A 0.29 TCGA-DU-6392-01 19 11319682 11319682 C T DOCK6 Missense_Mutation p.A1617T 0.30 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 19 11322803 11322803 C T DOCK6 Missense_Mutation p.V1506I 0.26 tolerated(0.12) possibly_damaging(0.841) TCGA-DU-6392-01 19 11332616 11332616 T C DOCK6 Missense_Mutation p.E1154G 0.11 deleterious(0.02) benign(0.027) TCGA-DU-6392-01 19 11338101 11338101 C T DOCK6 Missense_Mutation p.R956H 0.42 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 19 11436202 11436202 G A RAB3D Missense_Mutation p.R178C 0.09 deleterious(0.04) benign(0.135) TCGA-DU-6392-01 19 11447954 11447954 C T RAB3D Missense_Mutation p.R41Q 0.38 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 19 11488503 11488503 G A EPOR 3'UTR 0.42 TCGA-DU-6392-01 19 11489001 11489001 C T EPOR Missense_Mutation p.A396T 0.28 tolerated(0.2) benign(0.004) TCGA-DU-6392-01 19 11505135 11505135 G T RGL3 Missense_Mutation p.D698E 0.32 deleterious(0) unknown(0) TCGA-DU-6392-01 19 11597974 11597974 C A ZNF653 Splice_Site p.X391_splice 0.23 TCGA-DU-6392-01 19 11660705 11660705 G A CNN1 3'UTR 0.37 TCGA-DU-6392-01 19 11708432 11708432 G A ZNF627 5'UTR 0.42 TCGA-DU-6392-01 19 11762659 11762659 A T ZNF833P RNA 0.25 TCGA-DU-6392-01 19 11888483 11888483 C A ZNF441 Missense_Mutation p.L21M 0.14 deleterious(0.03) probably_damaging(0.992) TCGA-DU-6392-01 19 11890911 11890911 G A ZNF441 Missense_Mutation p.S91N 0.37 tolerated(0.32) benign(0.002) TCGA-DU-6392-01 19 11891085 11891085 C T ZNF441 Missense_Mutation p.A149V 0.45 deleterious(0.03) benign(0.206) TCGA-DU-6392-01 19 11892634 11892634 C T ZNF441 Silent p.H665H 0.24 TCGA-DU-6392-01 19 11979032 11979032 A G ZNF439 Missense_Mutation p.K383R 0.09 deleterious(0.01) possibly_damaging(0.463) TCGA-DU-6392-01 19 11979463 11979463 C A ZNF439 3'UTR 0.28 TCGA-DU-6392-01 19 12015652 12015652 G A ZNF69 Missense_Mutation p.G133D 0.07 tolerated(0.27) benign(0.014) TCGA-DU-6392-01 19 12059609 12059609 A C ZNF700 Missense_Mutation p.K257T 0.10 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 19 12060209 12060209 C T ZNF700 Missense_Mutation p.S457F 0.37 tolerated(0.69) benign(0.287) TCGA-DU-6392-01 19 12090498 12090498 C A ZNF763 3'UTR 0.41 TCGA-DU-6392-01 19 12256036 12256036 C A ZNF625 3'Flank 0.38 TCGA-DU-6392-01 19 12297985 12297985 G A ZNF136 Silent p.L264L 0.31 TCGA-DU-6392-01 19 12298441 12298441 A G ZNF136 Silent p.G416G 0.43 TCGA-DU-6392-01 19 1231117 1231117 C T C19orf26 Silent p.P379P 0.42 TCGA-DU-6392-01 19 12383465 12383465 C T ZNF44 Silent p.K583K 0.46 TCGA-DU-6392-01 19 12383810 12383810 G T ZNF44 Silent p.P468P 0.39 TCGA-DU-6392-01 19 12383872 12383872 T C ZNF44 Missense_Mutation p.K448E 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-DU-6392-01 19 12460635 12460635 T C ZNF442 Silent p.R588R 0.11 TCGA-DU-6392-01 19 12461740 12461741 - A ZNF442 Frame_Shift_Ins p.W220Lfs*3 0.30 TCGA-DU-6392-01 19 12463807 12463807 C T ZNF442 Missense_Mutation p.C67Y 0.10 tolerated(0.06) benign(0.04) TCGA-DU-6392-01 19 12501583 12501583 C T ZNF799 Nonsense_Mutation p.W543* 0.40 TCGA-DU-6392-01 19 12502896 12502896 G A ZNF799 Missense_Mutation p.R106C 0.37 deleterious(0.04) benign(0.008) TCGA-DU-6392-01 19 12503017 12503017 A G ZNF799 Silent p.C65C 0.11 TCGA-DU-6392-01 19 12540866 12540866 T C ZNF443 3'UTR 0.27 TCGA-DU-6392-01 19 12542575 12542575 T C ZNF443 Silent p.G137G 0.09 TCGA-DU-6392-01 19 12638021 12638021 T A ZNF564 Missense_Mutation p.I301F 0.29 deleterious(0.02) possibly_damaging(0.895) TCGA-DU-6392-01 19 12638453 12638453 G A ZNF564 Nonsense_Mutation p.R157* 0.12 TCGA-DU-6392-01 19 12719982 12719982 T C ZNF490 Missense_Mutation p.K51R 0.12 tolerated(0.53) benign(0.003) TCGA-DU-6392-01 19 12738638 12738638 C A ZNF791 Missense_Mutation p.P99T 0.33 deleterious(0.03) benign(0.001) TCGA-DU-6392-01 19 12738655 12738655 C A ZNF791 Silent p.I104I 0.12 TCGA-DU-6392-01 19 12738674 12738674 C T ZNF791 Missense_Mutation p.R111C 0.32 tolerated(0.26) possibly_damaging(0.6) TCGA-DU-6392-01 19 12739032 12739032 C A ZNF791 Missense_Mutation p.S230Y 0.39 tolerated(0.24) probably_damaging(0.975) TCGA-DU-6392-01 19 12760167 12760167 C T MAN2B1 Silent p.R781R 0.29 TCGA-DU-6392-01 19 12762982 12762982 C T MAN2B1 Silent p.Q677Q 0.28 TCGA-DU-6392-01 19 12776319 12776319 C T MAN2B1 Missense_Mutation p.A95T 0.30 deleterious(0.01) probably_damaging(0.935) TCGA-DU-6392-01 19 12779410 12779410 C T WDR83OS Missense_Mutation p.A60T 0.35 deleterious(0) probably_damaging(0.974) TCGA-DU-6392-01 19 12812258 12812258 C T TNPO2 Missense_Mutation p.G866S 0.55 tolerated(0.08) benign(0.018) TCGA-DU-6392-01 19 12821552 12821552 T C TNPO2 Missense_Mutation p.N385D 0.47 tolerated(0.22) benign(0.086) TCGA-DU-6392-01 19 12822220 12822220 C T TNPO2 Missense_Mutation p.R336H 0.28 tolerated(0.06) benign(0.219) TCGA-DU-6392-01 19 12883718 12883718 C T HOOK2 Silent p.A88A 0.29 TCGA-DU-6392-01 19 12962830 12962830 C T MAST1 Missense_Mutation p.A286V 0.48 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 19 12963039 12963039 C A MAST1 Silent p.G329G 0.35 TCGA-DU-6392-01 19 13008660 13008660 C T GCDH Missense_Mutation p.A409V 0.31 tolerated_low_confidence(0.33) possibly_damaging(0.73) TCGA-DU-6392-01 19 13010425 13010425 G A GCDH 3'UTR 0.45 TCGA-DU-6392-01 19 13051399 13051399 G A CALR Silent p.K249K 0.19 TCGA-DU-6392-01 19 13054427 13054427 C T CALR Missense_Mutation p.T346M 0.34 deleterious(0.02) possibly_damaging(0.9) TCGA-DU-6392-01 19 13059141 13059141 G A RAD23A Missense_Mutation p.A129T 0.31 tolerated(0.41) benign(0) TCGA-DU-6392-01 19 13063631 13063631 C A RAD23A Silent p.I314I 0.31 TCGA-DU-6392-01 19 13184238 13184238 C T NFIX Missense_Mutation p.H209Y 0.33 tolerated(0.83) possibly_damaging(0.782) TCGA-DU-6392-01 19 13184288 13184288 G A NFIX Silent p.T225T 0.39 TCGA-DU-6392-01 19 13184823 13184823 C A NFIX Silent p.T267T 0.19 TCGA-DU-6392-01 19 1358611 1358611 G T MUM1 Intron 0.38 TCGA-DU-6392-01 19 1364551 1364552 - A MUM1 Frame_Shift_Ins p.Y423Ifs*16 0.24 TCGA-DU-6392-01 19 13865139 13865139 G T CCDC130 Missense_Mutation p.D14Y 0.12 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 13873665 13873665 C A CCDC130 Missense_Mutation p.A325D 0.27 tolerated(0.37) benign(0.004) TCGA-DU-6392-01 19 1390944 1390944 C T NDUFS7 Silent p.Y101Y 0.09 TCGA-DU-6392-01 19 13915803 13915803 C T ZSWIM4 Missense_Mutation p.R185W 0.16 deleterious(0) benign(0.034) TCGA-DU-6392-01 19 13941042 13941042 T C ZSWIM4 Silent p.Y716Y 0.25 TCGA-DU-6392-01 19 14000930 14000930 G A C19orf57 Missense_Mutation p.P247S 0.41 tolerated(0.26) probably_damaging(0.932) TCGA-DU-6392-01 19 14034193 14034193 G A CC2D1A Silent p.R563R 0.39 TCGA-DU-6392-01 19 14038837 14038837 G A CC2D1A Silent p.V816V 0.10 TCGA-DU-6392-01 19 14047218 14047218 C T PODNL1 Missense_Mutation p.R101Q 0.36 tolerated(0.27) benign(0.001) TCGA-DU-6392-01 19 14160031 14160031 C T IL27RA Missense_Mutation p.A436V 0.41 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 19 1422373 1422373 C T DAZAP1 Silent p.D147D 0.32 TCGA-DU-6392-01 19 14262230 14262230 G A LPHN1 Missense_Mutation p.R1294W 0.47 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 19 14263606 14263606 G A LPHN1 Missense_Mutation p.T1143I 0.35 deleterious(0) benign(0.209) TCGA-DU-6392-01 19 14521801 14521801 C A DDX39A Missense_Mutation p.D205Y 0.37 deleterious(0.05) benign(0.065) TCGA-DU-6392-01 19 14561175 14561175 G A PKN1 Missense_Mutation p.R225Q 0.38 tolerated(0.22) benign(0.091) TCGA-DU-6392-01 19 14581099 14581099 C T PKN1 Silent p.Y812Y 0.14 TCGA-DU-6392-01 19 1462051 1462051 C T APC2 Silent p.G576G 0.38 TCGA-DU-6392-01 19 1486973 1486973 C A PCSK4 Missense_Mutation p.S316I 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 1487017 1487017 G A PCSK4 Silent p.G301G 0.13 TCGA-DU-6392-01 19 14877795 14877795 C T EMR2 Missense_Mutation p.C161Y 0.11 deleterious(0.01) possibly_damaging(0.855) TCGA-DU-6392-01 19 14877859 14877859 G T EMR2 Missense_Mutation p.L140I 0.19 tolerated(0.19) benign(0.048) TCGA-DU-6392-01 19 14910065 14910065 G A OR7C1 Missense_Mutation p.T295M 0.47 deleterious_low_confidence(0.01) benign(0.416) TCGA-DU-6392-01 19 14952327 14952327 G A OR7A10 Silent p.D121D 0.40 TCGA-DU-6392-01 19 14952390 14952390 C A OR7A10 Missense_Mutation p.Q100H 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-6392-01 19 1507280 1507280 C T ADAMTSL5 Silent p.L271L 0.37 TCGA-DU-6392-01 19 15133743 15133743 G A CCDC105 Missense_Mutation p.A438T 0.33 tolerated(0.49) benign(0.018) TCGA-DU-6392-01 19 15220140 15220140 G T SYDE1 Missense_Mutation p.R121I 0.12 deleterious(0.04) benign(0.043) TCGA-DU-6392-01 19 15234030 15234030 G A ILVBL Missense_Mutation p.T121I 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 15271598 15271598 C T NOTCH3 Missense_Mutation p.A2281T 0.40 tolerated(0.67) benign(0.014) TCGA-DU-6392-01 19 15291940 15291940 G A NOTCH3 Silent p.G942G 0.50 TCGA-DU-6392-01 19 15303018 15303018 G A NOTCH3 Silent p.C144C 0.31 TCGA-DU-6392-01 19 15471683 15471683 G A AKAP8 Silent p.S501S 0.33 TCGA-DU-6392-01 19 15484809 15484809 G A AKAP8 Silent p.Y53Y 0.30 TCGA-DU-6392-01 19 15508576 15508576 G T AKAP8L Missense_Mutation p.H416Q 0.30 tolerated(0.08) probably_damaging(0.967) TCGA-DU-6392-01 19 1555379 1555379 G A MEX3D 3'UTR 0.38 TCGA-DU-6392-01 19 1556539 1556539 C T MEX3D Missense_Mutation p.V327M 0.22 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 19 15575099 15575099 C T RASAL3 Missense_Mutation p.R24H 0.29 deleterious(0.05) benign(0.029) TCGA-DU-6392-01 19 15590223 15590223 C T PGLYRP2 5'UTR 0.50 TCGA-DU-6392-01 19 1578393 1578393 G A MBD3 Silent p.D274D 0.32 TCGA-DU-6392-01 19 15791247 15791247 G A CYP4F12 Missense_Mutation p.R148H 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-DU-6392-01 19 16035646 16035646 A G CYP4F11 Missense_Mutation p.M191T 0.36 deleterious(0.02) benign(0.183) TCGA-DU-6392-01 19 16192856 16192856 G A TPM4 Missense_Mutation p.R125K 0.63 deleterious(0.01) possibly_damaging(0.85) TCGA-DU-6392-01 19 16268152 16268152 C T HSH2D 3'Flank 0.38 TCGA-DU-6392-01 19 16437757 16437757 G A KLF2 Missense_Mutation p.G328D 0.42 deleterious(0) unknown(0) TCGA-DU-6392-01 19 16591453 16591453 A C CALR3 Missense_Mutation p.F328C 0.53 deleterious(0.03) benign(0.012) TCGA-DU-6392-01 19 16593275 16593275 G A CALR3 Silent p.L302L 0.45 TCGA-DU-6392-01 19 16612323 16612323 C T C19orf44 Silent p.S240S 0.25 TCGA-DU-6392-01 19 16614097 16614097 G T C19orf44 Missense_Mutation p.K327N 0.12 tolerated(0.16) benign(0.265) TCGA-DU-6392-01 19 16631278 16631278 G A CHERP Missense_Mutation p.R748C 0.12 deleterious(0.05) benign(0) TCGA-DU-6392-01 19 16664712 16664712 G A SLC35E1 Silent p.Y337Y 0.23 TCGA-DU-6392-01 19 16688338 16688338 G A MED26 Silent p.T101T 0.32 TCGA-DU-6392-01 19 16791393 16791393 G T TMEM38A Splice_Site p.X156_splice 0.15 TCGA-DU-6392-01 19 16860159 16860159 C A NWD1 Missense_Mutation p.P236T 0.11 deleterious(0.01) possibly_damaging(0.731) TCGA-DU-6392-01 19 16957837 16957837 G A SIN3B Silent p.V213V 0.43 TCGA-DU-6392-01 19 16973180 16973180 T G SIN3B Missense_Mutation p.F359C 0.08 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 19 17122306 17122306 C T CPAMD8 Missense_Mutation p.V199I 0.40 tolerated(0.28) benign(0.078) TCGA-DU-6392-01 19 17160655 17160655 G A HAUS8 3'UTR 0.38 TCGA-DU-6392-01 19 17212988 17212988 T C MYO9B Missense_Mutation p.L154P 0.36 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 19 17298836 17298836 C T MYO9B Silent p.S890S 0.46 TCGA-DU-6392-01 19 17311099 17311099 C T MYO9B Intron 0.29 TCGA-DU-6392-01 19 17313002 17313002 C A MYO9B Missense_Mutation p.L1576M 0.33 tolerated(0.41) benign(0.373) TCGA-DU-6392-01 19 17322563 17322563 C T MYO9B Missense_Mutation p.A2013V 0.43 tolerated(0.5) benign(0.04) TCGA-DU-6392-01 19 17322804 17322804 G A MYO9B 3'UTR 0.44 TCGA-DU-6392-01 19 17329142 17329142 G A USE1 Intron 0.30 TCGA-DU-6392-01 19 17370173 17370173 C T USHBP1 Missense_Mutation p.R324H 0.47 tolerated(0.28) benign(0.021) TCGA-DU-6392-01 19 17394492 17394493 - A ANKLE1 Frame_Shift_Ins p.P307Hfs*10 0.11 TCGA-DU-6392-01 19 17411728 17411728 T C ABHD8 Missense_Mutation p.D233G 0.33 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 19 17441161 17441161 C T ANO8 Silent p.Q382Q 0.57 TCGA-DU-6392-01 19 17597580 17597580 G A SLC27A1 Missense_Mutation p.A126T 0.40 tolerated(0.39) benign(0.002) TCGA-DU-6392-01 19 17597672 17597672 G A SLC27A1 Silent p.A156A 0.38 TCGA-DU-6392-01 19 17615406 17615406 C T SLC27A1 Silent p.G642G 0.33 TCGA-DU-6392-01 19 17615413 17615413 G A SLC27A1 Missense_Mutation p.A645T 0.37 tolerated(0.3) benign(0.07) TCGA-DU-6392-01 19 17692076 17692076 C T COLGALT1 Silent p.D564D 0.11 TCGA-DU-6392-01 19 17735657 17735657 G A UNC13A Missense_Mutation p.P1393L 0.28 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 17752231 17752231 G A UNC13A Silent p.Y869Y 0.15 TCGA-DU-6392-01 19 17753751 17753751 G A UNC13A Missense_Mutation p.S792F 0.23 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 17759323 17759323 G A UNC13A Missense_Mutation p.A578V 0.38 deleterious(0.01) probably_damaging(0.966) TCGA-DU-6392-01 19 17838652 17838652 G A MAP1S Missense_Mutation p.R820H 0.53 tolerated(0.08) possibly_damaging(0.862) TCGA-DU-6392-01 19 17889000 17889000 G A FCHO1 Silent p.P438P 0.39 TCGA-DU-6392-01 19 17972951 17972951 C T RPL18A Missense_Mutation p.R83C 0.29 deleterious(0.05) possibly_damaging(0.528) TCGA-DU-6392-01 19 18084939 18084939 G T KCNN1 Missense_Mutation p.R81I 0.33 tolerated(0.25) benign(0.008) TCGA-DU-6392-01 19 18092792 18092792 G A KCNN1 Missense_Mutation p.R258H 0.58 deleterious(0) possibly_damaging(0.879) TCGA-DU-6392-01 19 1821569 1821569 C T REXO1 Silent p.K781K 0.37 TCGA-DU-6392-01 19 18273240 18273240 C T PIK3R2 Missense_Mutation p.R345W 0.24 deleterious(0) possibly_damaging(0.897) TCGA-DU-6392-01 19 1827631 1827631 G A REXO1 Missense_Mutation p.A386V 0.27 tolerated(0.28) benign(0.003) TCGA-DU-6392-01 19 18286467 18286467 G A IFI30 Missense_Mutation p.C148Y 0.50 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 18313466 18313466 C T RAB3A Missense_Mutation p.G29S 0.39 deleterious(0.04) probably_damaging(0.974) TCGA-DU-6392-01 19 18324238 18324238 C T PDE4C Silent p.E516E 0.20 TCGA-DU-6392-01 19 18329299 18329299 G T PDE4C Missense_Mutation p.L359M 0.09 deleterious(0.03) probably_damaging(0.985) TCGA-DU-6392-01 19 18331255 18331255 C T PDE4C Silent p.T222T 0.20 TCGA-DU-6392-01 19 18376213 18376213 G T KIAA1683 Missense_Mutation p.L713M 0.42 deleterious(0.03) possibly_damaging(0.626) TCGA-DU-6392-01 19 18377077 18377077 C T KIAA1683 Missense_Mutation p.A425T 0.40 tolerated(0.78) benign(0.027) TCGA-DU-6392-01 19 18378152 18378152 C T KIAA1683 Silent p.P66P 0.38 TCGA-DU-6392-01 19 18502922 18502922 C A LRRC25 Nonsense_Mutation p.E265* 0.39 TCGA-DU-6392-01 19 18546085 18546085 T G ISYNA1 Missense_Mutation p.N488T 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 19 18555662 18555662 C A ELL Missense_Mutation p.S589I 0.10 tolerated(0.07) possibly_damaging(0.69) TCGA-DU-6392-01 19 18572498 18572498 G T ELL Missense_Mutation p.L212M 0.40 tolerated(0.23) benign(0.386) TCGA-DU-6392-01 19 18710376 18710376 G A CRLF1 Silent p.G132G 0.46 TCGA-DU-6392-01 19 18888272 18888272 C T CRTC1 3'UTR 0.41 TCGA-DU-6392-01 19 18965817 18965817 G A UPF1 Silent p.A465A 0.31 TCGA-DU-6392-01 19 18966764 18966764 C T UPF1 Silent p.I525I 0.39 TCGA-DU-6392-01 19 19040130 19040130 G A HOMER3 3'UTR 0.47 TCGA-DU-6392-01 19 19049214 19049214 C T HOMER3 Missense_Mutation p.R84H 0.33 deleterious(0.03) benign(0.071) TCGA-DU-6392-01 19 19121087 19121087 G A SUGP2 Missense_Mutation p.R639W 0.06 deleterious(0) probably_damaging(0.972) TCGA-DU-6392-01 19 1918987 1918987 G A SCAMP4 Silent p.A131A 0.27 TCGA-DU-6392-01 19 19243998 19243998 C T TMEM161A Silent p.P43P 0.26 TCGA-DU-6392-01 19 19257608 19257608 C A MEF2B Silent p.G206G 0.31 TCGA-DU-6392-01 19 19258575 19258575 G A MEF2B Missense_Mutation p.P109S 0.44 tolerated(0.13) benign(0.011) TCGA-DU-6392-01 19 19329930 19329930 C A NCAN Missense_Mutation p.L94M 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 19330052 19330052 C A NCAN Missense_Mutation p.D134E 0.36 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 19 19351456 19351456 G A NCAN Missense_Mutation p.V1152M 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 19416805 19416805 G A SUGP1 Missense_Mutation p.R131W 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 19446943 19446943 G A MAU2 Missense_Mutation p.E103K 0.34 deleterious(0.01) benign(0.342) TCGA-DU-6392-01 19 19466199 19466199 C T MAU2 Missense_Mutation p.T589M 0.36 tolerated(0.15) benign(0.006) TCGA-DU-6392-01 19 19603460 19603460 A C GATAD2A Missense_Mutation p.K158T 0.12 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 19 19625988 19625988 G A TSSK6 Silent p.N83N 0.51 TCGA-DU-6392-01 19 19740991 19740991 G A GMIP Silent p.T898T 0.36 TCGA-DU-6392-01 19 19741109 19741109 G A GMIP Missense_Mutation p.T859I 0.35 deleterious(0.02) possibly_damaging(0.883) TCGA-DU-6392-01 19 19746001 19746001 G A GMIP Missense_Mutation p.R528C 0.42 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 19 19770598 19770598 G A ATP13A1 Silent p.G163G 0.46 TCGA-DU-6392-01 19 1978308 1978308 G A CSNK1G2 Silent p.K64K 0.17 TCGA-DU-6392-01 19 1980185 1980185 C T CSNK1G2 Silent p.L411L 0.43 TCGA-DU-6392-01 19 19822991 19822991 G A ZNF14 Nonsense_Mutation p.R367* 0.36 TCGA-DU-6392-01 19 19822999 19822999 T C ZNF14 Missense_Mutation p.E364G 0.36 deleterious(0.04) possibly_damaging(0.844) TCGA-DU-6392-01 19 1987624 1987624 G T BTBD2 Missense_Mutation p.N352K 0.28 tolerated(0.17) benign(0.318) TCGA-DU-6392-01 19 19917798 19917798 A G ZNF506 Missense_Mutation p.L28P 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 20027398 20027398 G A ZNF93 Missense_Mutation p.A54T 0.40 tolerated(1) benign(0.001) TCGA-DU-6392-01 19 20117136 20117136 G T ZNF682 Missense_Mutation p.T392N 0.40 deleterious(0.01) probably_damaging(0.943) TCGA-DU-6392-01 19 20295172 20295172 T C ZNF486 Missense_Mutation p.L13S 0.08 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 19 20307822 20307822 A C ZNF486 Missense_Mutation p.K101N 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-DU-6392-01 19 2037722 2037722 G T MKNK2 3'UTR 0.14 TCGA-DU-6392-01 19 2073303 2073303 G A MOB3A 3'UTR 0.33 TCGA-DU-6392-01 19 20806945 20806945 A C ZNF626 3'UTR 0.31 TCGA-DU-6392-01 19 20808170 20808170 T C ZNF626 Silent p.K171K 0.40 TCGA-DU-6392-01 19 20808276 20808276 C T ZNF626 Missense_Mutation p.C136Y 0.37 deleterious(0.04) benign(0.006) TCGA-DU-6392-01 19 21131627 21131627 A C ZNF85 Silent p.R103R 0.43 TCGA-DU-6392-01 19 21131860 21131860 C T ZNF85 Silent p.G180G 0.24 TCGA-DU-6392-01 19 2116215 2116215 C T AP3D1 Silent p.S688S 0.26 TCGA-DU-6392-01 19 2130455 2130455 G A AP3D1 Missense_Mutation p.R182C 0.47 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 19 21366001 21366001 C T ZNF431 Missense_Mutation p.R299W 0.15 tolerated(0.34) possibly_damaging(0.887) TCGA-DU-6392-01 19 21366678 21366678 C A ZNF431 Silent p.S524S 0.33 TCGA-DU-6392-01 19 21476056 21476056 A G ZNF708 3'UTR 0.27 TCGA-DU-6392-01 19 21476213 21476213 G T ZNF708 Missense_Mutation p.L519I 0.11 deleterious(0.02) possibly_damaging(0.737) TCGA-DU-6392-01 19 21477090 21477090 A G ZNF708 Silent p.C226C 0.42 TCGA-DU-6392-01 19 21607350 21607350 A G ZNF493 Missense_Mutation p.K630R 0.33 tolerated(0.07) benign(0.215) TCGA-DU-6392-01 19 21720457 21720457 G A ZNF429 Silent p.E534E 0.41 TCGA-DU-6392-01 19 21910280 21910280 T C ZNF100 Silent p.T278T 0.33 TCGA-DU-6392-01 19 21934296 21934296 G T ZNF100 Intron 0.13 TCGA-DU-6392-01 19 21991967 21991967 C T ZNF43 Missense_Mutation p.C291Y 0.13 deleterious(0.01) possibly_damaging(0.799) TCGA-DU-6392-01 19 22000714 22000714 G A ZNF43 Missense_Mutation p.H69Y 0.42 tolerated(0.32) benign(0.009) TCGA-DU-6392-01 19 2216561 2216561 G A DOT1L Silent p.T735T 0.47 TCGA-DU-6392-01 19 2216658 2216658 G A DOT1L Missense_Mutation p.A768T 0.40 deleterious_low_confidence(0) benign(0.057) TCGA-DU-6392-01 19 22193661 22193661 G A ZNF208 5'UTR 0.36 TCGA-DU-6392-01 19 2226610 2226610 G A DOT1L Missense_Mutation p.A1364T 0.62 tolerated_low_confidence(0.39) benign(0.007) TCGA-DU-6392-01 19 22363485 22363485 G A ZNF676 Missense_Mutation p.A345V 0.13 deleterious(0.03) benign(0.341) TCGA-DU-6392-01 19 22375896 22375896 G A ZNF676 Missense_Mutation p.P18S 0.28 deleterious(0) benign(0.415) TCGA-DU-6392-01 19 22836173 22836173 C T ZNF492 5'UTR 0.06 TCGA-DU-6392-01 19 22846798 22846798 G T ZNF492 Missense_Mutation p.Q109H 0.24 tolerated(0.09) probably_damaging(0.948) TCGA-DU-6392-01 19 2290284 2290284 G A LINGO3 Missense_Mutation p.R498C 0.36 deleterious(0) benign(0.334) TCGA-DU-6392-01 19 22940405 22940405 G T ZNF99 Missense_Mutation p.A769D 0.34 deleterious(0.04) benign(0.065) TCGA-DU-6392-01 19 23299882 23299882 C A ZNF730 5'UTR 0.24 TCGA-DU-6392-01 19 23329052 23329052 C T ZNF730 Silent p.G402G 0.33 TCGA-DU-6392-01 19 23544668 23544668 A G ZNF91 Silent p.T371T 0.11 TCGA-DU-6392-01 19 23836033 23836033 C T ZNF675 Missense_Mutation p.V568M 0.32 deleterious_low_confidence(0.01) benign(0.046) TCGA-DU-6392-01 19 23926698 23926698 G A ZNF681 Missense_Mutation p.H552Y 0.29 deleterious(0.02) possibly_damaging(0.827) TCGA-DU-6392-01 19 2399191 2399191 G T TMPRSS9 Missense_Mutation p.G138W 0.52 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 19 2405420 2405420 G A TMPRSS9 Missense_Mutation p.G206D 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 2405514 2405514 G A TMPRSS9 Nonsense_Mutation p.W237* 0.17 TCGA-DU-6392-01 19 2416729 2416729 C A TMPRSS9 Missense_Mutation p.L613M 0.15 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 2421892 2421892 G A TMPRSS9 Missense_Mutation p.G698D 0.32 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 19 2426155 2426155 C A TMPRSS9 3'UTR 0.46 TCGA-DU-6392-01 19 2434897 2434897 C A LMNB2 Missense_Mutation p.K290N 0.17 deleterious(0.01) possibly_damaging(0.733) TCGA-DU-6392-01 19 2717757 2717757 G A DIRAS1 Silent p.G16G 0.33 TCGA-DU-6392-01 19 2732805 2732805 G T SLC39A3 Missense_Mutation p.L297I 0.38 tolerated(0.07) possibly_damaging(0.896) TCGA-DU-6392-01 19 2759266 2759266 C A SGTA Missense_Mutation p.Q242H 0.11 deleterious(0.01) probably_damaging(0.94) TCGA-DU-6392-01 19 2794832 2794832 G T THOP1 Missense_Mutation p.E100D 0.30 tolerated(0.11) benign(0.001) TCGA-DU-6392-01 19 2794857 2794857 G A THOP1 Missense_Mutation p.D109N 0.34 tolerated(0.1) probably_damaging(0.998) TCGA-DU-6392-01 19 2853330 2853330 C T ZNF555 Missense_Mutation p.P423S 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 19 2853649 2853649 C T ZNF555 Missense_Mutation p.T529M 0.41 tolerated(0.31) possibly_damaging(0.648) TCGA-DU-6392-01 19 2917641 2917641 G A ZNF57 Missense_Mutation p.C341Y 0.32 deleterious(0.01) benign(0.02) TCGA-DU-6392-01 19 2934794 2934794 A G ZNF77 Missense_Mutation p.C111R 0.42 tolerated(0.24) benign(0.039) TCGA-DU-6392-01 19 3005496 3005496 G A TLE2 Missense_Mutation p.T612M 0.53 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 3013775 3013775 G A TLE2 Silent p.C255C 0.30 TCGA-DU-6392-01 19 30934480 30934480 C T ZNF536 Missense_Mutation p.A4V 0.31 deleterious_low_confidence(0.01) benign(0.169) TCGA-DU-6392-01 19 30934888 30934888 G A ZNF536 Missense_Mutation p.R140H 0.44 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 19 30935223 30935223 G A ZNF536 Missense_Mutation p.A252T 0.54 tolerated(0.28) benign(0.004) TCGA-DU-6392-01 19 30935400 30935400 C T ZNF536 Nonsense_Mutation p.Q311* 0.09 TCGA-DU-6392-01 19 31040088 31040088 G A ZNF536 Missense_Mutation p.E1188K 0.29 tolerated_low_confidence(0.1) benign(0.427) TCGA-DU-6392-01 19 31040234 31040234 G T ZNF536 Missense_Mutation p.Q1236H 0.22 tolerated_low_confidence(0.07) benign(0.213) TCGA-DU-6392-01 19 3115036 3115036 G A GNA11 Missense_Mutation p.E191K 0.37 deleterious(0.02) probably_damaging(0.981) TCGA-DU-6392-01 19 3192602 3192602 G A NCLN Missense_Mutation p.A107T 0.52 deleterious(0) benign(0.382) TCGA-DU-6392-01 19 327978 327978 C T MIER2 Missense_Mutation p.M85I 0.29 deleterious(0.02) possibly_damaging(0.876) TCGA-DU-6392-01 19 3282219 3282219 C T CELF5 Silent p.A282A 0.40 TCGA-DU-6392-01 19 32844172 32844172 C T ZNF507 Nonsense_Mutation p.Q146* 0.39 TCGA-DU-6392-01 19 32844255 32844255 C T ZNF507 Silent p.H173H 0.36 TCGA-DU-6392-01 19 32844694 32844694 C T ZNF507 Missense_Mutation p.P320S 0.35 tolerated(0.13) probably_damaging(0.968) TCGA-DU-6392-01 19 33092956 33092956 C T ANKRD27 Missense_Mutation p.R911H 0.26 tolerated_low_confidence(1) possibly_damaging(0.522) TCGA-DU-6392-01 19 33200138 33200138 T C NUDT19 Silent p.I254I 0.09 TCGA-DU-6392-01 19 33334843 33334843 G A SLC7A9 Missense_Mutation p.A331V 0.64 deleterious(0) probably_damaging(0.977) TCGA-DU-6392-01 19 33355633 33355633 G A SLC7A9 Missense_Mutation p.S46F 0.23 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 33666397 33666397 C T WDR88 Silent p.G446G 0.52 TCGA-DU-6392-01 19 3382050 3382050 C T NFIC Missense_Mutation p.A124V 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 33870462 33870463 - A CEBPG Frame_Shift_Ins p.I108Nfs*17 0.29 TCGA-DU-6392-01 19 34263486 34263486 G A CHST8 Missense_Mutation p.V265M 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 34710693 34710693 A G LSM14A Silent p.G349G 0.20 TCGA-DU-6392-01 19 34791788 34791788 C A KIAA0355 Missense_Mutation p.P137H 0.39 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-DU-6392-01 19 34856219 34856219 G A GPI Nonsense_Mutation p.W55* 0.42 TCGA-DU-6392-01 19 34890140 34890140 C T GPI Missense_Mutation p.T444I 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.6) TCGA-DU-6392-01 19 34935965 34935965 G A UBA2 Missense_Mutation p.R237H 0.09 deleterious(0) benign(0.063) TCGA-DU-6392-01 19 34936026 34936026 G T UBA2 Missense_Mutation p.K257N 0.36 deleterious(0) probably_damaging(0.951) TCGA-DU-6392-01 19 35175413 35175413 A - ZNF302 Frame_Shift_Del p.K159Sfs*4 0.12 TCGA-DU-6392-01 19 35175594 35175594 C T ZNF302 Missense_Mutation p.R218C 0.40 deleterious(0.01) possibly_damaging(0.903) TCGA-DU-6392-01 19 3527008 3527008 G A FZR1 Missense_Mutation p.D140N 0.54 tolerated(0.55) benign(0.014) TCGA-DU-6392-01 19 3544676 3544676 T C MFSD12 Intron 0.33 TCGA-DU-6392-01 19 35450383 35450383 G T ZNF792 Missense_Mutation p.L126M 0.09 tolerated(0.14) possibly_damaging(0.851) TCGA-DU-6392-01 19 3547269 3547269 C T MFSD12 Splice_Site p.X341_splice 0.29 TCGA-DU-6392-01 19 35510153 35510153 G A GRAMD1A Silent p.T424T 0.23 TCGA-DU-6392-01 19 35719072 35719072 G T FAM187B Missense_Mutation p.P171H 0.09 tolerated(0.07) benign(0.054) TCGA-DU-6392-01 19 35741347 35741347 A G LSR Missense_Mutation p.Y128C 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 19 35761456 35761456 C T USF2 Missense_Mutation p.T179M 0.30 tolerated(0.11) probably_damaging(0.95) TCGA-DU-6392-01 19 35827141 35827141 G A CD22 Silent p.K205K 0.10 TCGA-DU-6392-01 19 35835805 35835805 C A CD22 Silent p.I703I 0.49 TCGA-DU-6392-01 19 35940854 35940854 G A FFAR2 Missense_Mutation p.V80I 0.38 tolerated(0.51) benign(0.003) TCGA-DU-6392-01 19 35991443 35991443 C A DMKN Missense_Mutation p.D427Y 0.47 deleterious(0.01) unknown(0) TCGA-DU-6392-01 19 3600109 3600109 G A TBXA2R Missense_Mutation p.T175I 0.27 tolerated(0.12) possibly_damaging(0.839) TCGA-DU-6392-01 19 36017820 36017820 G A SBSN Missense_Mutation p.A455V 0.25 tolerated(0.84) possibly_damaging(0.866) TCGA-DU-6392-01 19 36034625 36034625 A G GAPDHS Missense_Mutation p.T318A 0.17 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DU-6392-01 19 36044680 36044680 G T ATP4A Missense_Mutation p.L845M 0.42 deleterious(0) possibly_damaging(0.848) TCGA-DU-6392-01 19 36053484 36053484 C T ATP4A Silent p.L91L 0.58 TCGA-DU-6392-01 19 36109559 36109559 T G HAUS5 Missense_Mutation p.L325R 0.10 tolerated(0.16) probably_damaging(1) TCGA-DU-6392-01 19 36110348 36110348 G A HAUS5 Missense_Mutation p.R401H 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 36128403 36128403 C A RBM42 Missense_Mutation p.L464M 0.33 tolerated(0.32) unknown(0) TCGA-DU-6392-01 19 36210784 36210784 C T KMT2B Missense_Mutation p.R179W 0.39 unknown(0) TCGA-DU-6392-01 19 36213916 36213916 G T KMT2B Missense_Mutation p.E914D 0.32 possibly_damaging(0.899) TCGA-DU-6392-01 19 36214652 36214652 G A KMT2B Silent p.T1026T 0.29 TCGA-DU-6392-01 19 36221323 36221323 C A KMT2B Missense_Mutation p.F1719L 0.11 possibly_damaging(0.827) TCGA-DU-6392-01 19 36224743 36224743 C A KMT2B Missense_Mutation p.L2377M 0.22 possibly_damaging(0.608) TCGA-DU-6392-01 19 36259311 36259311 C T C19orf55 3'UTR 0.37 TCGA-DU-6392-01 19 36272095 36272095 C T ARHGAP33 Silent p.H342H 0.29 TCGA-DU-6392-01 19 36276168 36276168 G A ARHGAP33 Missense_Mutation p.G600D 0.36 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-DU-6392-01 19 36357131 36357131 G T KIRREL2 Missense_Mutation p.G622C 0.09 deleterious(0.02) probably_damaging(0.947) TCGA-DU-6392-01 19 36362885 36362885 A G APLP1 Missense_Mutation p.E266G 0.06 tolerated(0.08) possibly_damaging(0.506) TCGA-DU-6392-01 19 3643317 3643317 C T PIP5K1C Missense_Mutation p.A525T 0.41 tolerated_low_confidence(0.11) benign(0.056) TCGA-DU-6392-01 19 36499482 36499482 G A SYNE4 Silent p.C34C 0.46 TCGA-DU-6392-01 19 36501867 36501867 G T ALKBH6 Missense_Mutation p.L117I 0.15 deleterious(0.05) probably_damaging(0.988) TCGA-DU-6392-01 19 36508317 36508317 A G CLIP3 Missense_Mutation p.V496A 0.38 tolerated(0.81) benign(0.003) TCGA-DU-6392-01 19 36508319 36508319 G A CLIP3 Silent p.S495S 0.35 TCGA-DU-6392-01 19 36509857 36509857 G A CLIP3 Missense_Mutation p.R376W 0.44 deleterious(0) possibly_damaging(0.893) TCGA-DU-6392-01 19 36515309 36515309 C T CLIP3 Missense_Mutation p.D303N 0.21 tolerated(0.8) benign(0.346) TCGA-DU-6392-01 19 36594735 36594735 C T WDR62 Silent p.S1335S 0.40 TCGA-DU-6392-01 19 36637211 36637211 T C CAPNS1 Missense_Mutation p.F240L 0.41 deleterious(0.01) possibly_damaging(0.466) TCGA-DU-6392-01 19 36642626 36642626 G A COX7A1 Missense_Mutation p.S16F 0.56 deleterious(0) possibly_damaging(0.8) TCGA-DU-6392-01 19 36673579 36673579 C T ZNF565 Missense_Mutation p.R430H 0.44 tolerated(0.58) benign(0.198) TCGA-DU-6392-01 19 36831672 36831672 G A ZFP14 Silent p.C352C 0.39 TCGA-DU-6392-01 19 36832369 36832369 C T ZFP14 Missense_Mutation p.R120K 0.28 tolerated(0.29) benign(0) TCGA-DU-6392-01 19 36884446 36884446 G A ZFP82 Nonsense_Mutation p.R266* 0.40 TCGA-DU-6392-01 19 36940060 36940060 C A ZNF566 Missense_Mutation p.R360I 0.10 tolerated(0.06) benign(0.2) TCGA-DU-6392-01 19 36940119 36940119 G A ZNF566 Silent p.Y340Y 0.35 TCGA-DU-6392-01 19 37038801 37038801 A C ZNF529 Missense_Mutation p.I220S 0.31 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 19 37210117 37210117 G A ZNF567 Missense_Mutation p.G133E 0.42 tolerated(0.77) benign(0.004) TCGA-DU-6392-01 19 37211222 37211222 C A ZNF567 Silent p.P501P 0.09 TCGA-DU-6392-01 19 3728653 3728653 G A TJP3 Missense_Mutation p.G43S 0.42 tolerated(0.39) benign(0.022) TCGA-DU-6392-01 19 37368419 37368419 T G ZNF345 Silent p.P229P 0.37 TCGA-DU-6392-01 19 37383201 37383201 G T ZNF829 Silent p.T245T 0.33 TCGA-DU-6392-01 19 37643829 37643829 C A ZNF585A Missense_Mutation p.K269N 0.08 deleterious(0.02) benign(0.31) TCGA-DU-6392-01 19 37644027 37644027 C T ZNF585A Silent p.K203K 0.43 TCGA-DU-6392-01 19 37676747 37676747 T C ZNF585B Missense_Mutation p.I564M 0.15 tolerated(0.2) possibly_damaging(0.653) TCGA-DU-6392-01 19 37678054 37678055 - T ZNF585B Frame_Shift_Ins p.S129Ifs*3 0.27 TCGA-DU-6392-01 19 3771688 3771688 G A RAX2 Missense_Mutation p.P18L 0.17 tolerated(0.19) probably_damaging(0.913) TCGA-DU-6392-01 19 37733454 37733454 G T ZNF383 Nonsense_Mutation p.G106* 0.26 TCGA-DU-6392-01 19 37734511 37734511 C T ZNF383 Missense_Mutation p.A458V 0.43 deleterious(0.03) benign(0.328) TCGA-DU-6392-01 19 3779617 3779617 T C MATK Splice_Site p.X282_splice 0.38 TCGA-DU-6392-01 19 37853998 37853998 C T HKR1 Missense_Mutation p.T434I 0.41 tolerated(0.1) benign(0.196) TCGA-DU-6392-01 19 37854500 37854500 C T HKR1 Silent p.H601H 0.38 TCGA-DU-6392-01 19 37904943 37904943 C A ZNF569 Missense_Mutation p.R206I 0.39 deleterious(0.01) benign(0.279) TCGA-DU-6392-01 19 37905279 37905279 C A ZNF569 Missense_Mutation p.R94I 0.29 tolerated(0.05) benign(0) TCGA-DU-6392-01 19 38090600 38090600 G T ZNF540 Missense_Mutation p.R28M 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-DU-6392-01 19 38103579 38103579 C A ZNF540 Silent p.P466P 0.09 TCGA-DU-6392-01 19 38127090 38127090 C T ZFP30 Missense_Mutation p.E118K 0.46 tolerated(0.33) benign(0.001) TCGA-DU-6392-01 19 38190099 38190099 G A ZNF607 Silent p.C311C 0.40 TCGA-DU-6392-01 19 38229677 38229677 G A ZNF573 Missense_Mutation p.H572Y 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-DU-6392-01 19 38230584 38230584 A G ZNF573 Silent p.T269T 0.11 TCGA-DU-6392-01 19 38610010 38610010 T C SIPA1L3 Missense_Mutation p.F786L 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 38703001 38703001 C T DPF1 Missense_Mutation p.D365N 0.50 deleterious(0) possibly_damaging(0.512) TCGA-DU-6392-01 19 38713067 38713067 G A DPF1 Silent p.R103R 0.40 TCGA-DU-6392-01 19 38861280 38861280 G A CATSPERG Missense_Mutation p.A1110T 0.43 tolerated(0.45) possibly_damaging(0.682) TCGA-DU-6392-01 19 38946361 38946361 C T RYR1 Silent p.S587S 0.25 TCGA-DU-6392-01 19 38976717 38976717 C T RYR1 Missense_Mutation p.R1808W 0.44 probably_damaging(0.948) TCGA-DU-6392-01 19 39023358 39023358 G T RYR1 Missense_Mutation p.E3747D 0.09 benign(0.001) TCGA-DU-6392-01 19 3907750 3907750 C T ATCAY Missense_Mutation p.T126I 0.31 tolerated(0.12) benign(0.005) TCGA-DU-6392-01 19 39108527 39108527 G A MAP4K1 Silent p.V3V 0.38 TCGA-DU-6392-01 19 39214701 39214701 C A ACTN4 Missense_Mutation p.T559N 0.40 tolerated(0.22) benign(0.001) TCGA-DU-6392-01 19 39306645 39306645 C T ECH1 Missense_Mutation p.R245Q 0.22 deleterious(0.04) possibly_damaging(0.599) TCGA-DU-6392-01 19 39327197 39327197 G A HNRNPL 3'UTR 0.30 TCGA-DU-6392-01 19 39328286 39328286 G A AC104534.3 Silent p.C138C 0.12 TCGA-DU-6392-01 19 39406518 39406518 C T SARS2 Missense_Mutation p.R461H 0.25 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 3942216 3942216 G A NMRK2 Missense_Mutation p.R213H 0.42 tolerated_low_confidence(0.55) benign(0) TCGA-DU-6392-01 19 39433383 39433383 G A CTC-360G5.8 Silent p.H139H 0.10 TCGA-DU-6392-01 19 3964909 3964909 C T DAPK3 Missense_Mutation p.R48H 0.25 deleterious(0.02) probably_damaging(0.928) TCGA-DU-6392-01 19 3964928 3964928 T C DAPK3 Missense_Mutation p.K42E 0.17 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 39691388 39691388 C T NCCRP1 Missense_Mutation p.R274W 0.40 deleterious(0) possibly_damaging(0.896) TCGA-DU-6392-01 19 39805603 39805603 A T LRFN1 Missense_Mutation p.L125Q 0.36 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 19 3980680 3980680 G T EEF2 Missense_Mutation p.P393H 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-DU-6392-01 19 39880395 39880395 G A PAF1 Silent p.V59V 0.29 TCGA-DU-6392-01 19 39880742 39880742 G T PAF1 Missense_Mutation p.P46H 0.09 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 19 39907053 39907053 G T PLEKHG2 Missense_Mutation p.R182M 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 19 39948334 39948334 G T SUPT5H Missense_Mutation p.E87D 0.08 tolerated(0.33) benign(0.036) TCGA-DU-6392-01 19 39959494 39959494 C T SUPT5H Missense_Mutation p.S379F 0.30 deleterious(0) possibly_damaging(0.451) TCGA-DU-6392-01 19 40327309 40327309 C T FBL Splice_Site p.X228_splice 0.36 TCGA-DU-6392-01 19 40329705 40329705 C T FBL Silent p.T173T 0.35 TCGA-DU-6392-01 19 4033559 4033559 G A PIAS4 Missense_Mutation p.D375N 0.50 deleterious(0.03) probably_damaging(0.974) TCGA-DU-6392-01 19 40412178 40412178 C T FCGBP Silent p.P1150P 0.37 TCGA-DU-6392-01 19 40419877 40419877 G A FCGBP Silent p.G1039G 0.37 TCGA-DU-6392-01 19 40433186 40433186 C T FCGBP Silent p.V361V 0.26 TCGA-DU-6392-01 19 40433710 40433710 C T FCGBP Missense_Mutation p.A187T 0.38 possibly_damaging(0.643) TCGA-DU-6392-01 19 4054026 4054026 C T ZBTB7A Missense_Mutation p.R402H 0.38 deleterious(0) possibly_damaging(0.809) TCGA-DU-6392-01 19 4054046 4054046 G A ZBTB7A Silent p.G395G 0.14 TCGA-DU-6392-01 19 4054174 4054174 G T ZBTB7A Missense_Mutation p.L353M 0.33 tolerated(0.14) benign(0.133) TCGA-DU-6392-01 19 40581101 40581101 T C ZNF780A Silent p.P417P 0.07 TCGA-DU-6392-01 19 40715068 40715068 C T MAP3K10 Silent p.S498S 0.35 TCGA-DU-6392-01 19 40722009 40722009 C T TTC9B 3'UTR 0.26 TCGA-DU-6392-01 19 40744860 40744860 C T AKT2 Silent p.Q220Q 0.44 TCGA-DU-6392-01 19 40872796 40872796 C T PLD3 Silent p.R73R 0.33 TCGA-DU-6392-01 19 40876110 40876110 G A PLD3 Missense_Mutation p.G215D 0.12 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 40890006 40890006 C T HIPK4 Missense_Mutation p.R169H 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-DU-6392-01 19 40902826 40902826 A G PRX Missense_Mutation p.L478P 0.07 deleterious(0.02) possibly_damaging(0.883) TCGA-DU-6392-01 19 40902982 40902982 C T PRX Missense_Mutation p.G426D 0.40 tolerated(0.06) probably_damaging(0.969) TCGA-DU-6392-01 19 40998936 40998936 T G SPTBN4 Missense_Mutation p.L188V 0.10 deleterious(0) benign(0.001) TCGA-DU-6392-01 19 41008321 41008321 G T SPTBN4 Missense_Mutation p.E370D 0.36 deleterious(0) possibly_damaging(0.459) TCGA-DU-6392-01 19 41009792 41009792 C T SPTBN4 Missense_Mutation p.A473V 0.14 deleterious(0) probably_damaging(0.93) TCGA-DU-6392-01 19 41038566 41038566 C T SPTBN4 Missense_Mutation p.A1328V 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-DU-6392-01 19 41040140 41040140 C T SPTBN4 Nonsense_Mutation p.Q1417* 0.47 TCGA-DU-6392-01 19 41086793 41086793 C T SHKBP1 Silent p.S265S 0.33 TCGA-DU-6392-01 19 41095083 41095083 C T SHKBP1 Missense_Mutation p.R530W 0.45 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 4110573 4110573 C T MAP2K2 Silent p.P128P 0.43 TCGA-DU-6392-01 19 41120228 41120228 C T LTBP4 Silent p.D963D 0.41 TCGA-DU-6392-01 19 41122838 41122838 C A LTBP4 Silent p.A1019A 0.14 TCGA-DU-6392-01 19 4117563 4117563 G A MAP2K2 Missense_Mutation p.R53W 0.42 deleterious(0) benign(0.204) TCGA-DU-6392-01 19 41197926 41197926 C T ADCK4 3'UTR 0.44 TCGA-DU-6392-01 19 41206296 41206296 C T ADCK4 Silent p.T318T 0.55 TCGA-DU-6392-01 19 41223253 41223253 T C ITPKC Silent p.P71P 0.35 TCGA-DU-6392-01 19 41224105 41224105 C T ITPKC Silent p.G355G 0.37 TCGA-DU-6392-01 19 41235124 41235124 G T ITPKC Nonsense_Mutation p.E425* 0.11 TCGA-DU-6392-01 19 41249867 41249867 A C C19orf54 Missense_Mutation p.F221V 0.33 deleterious(0.04) possibly_damaging(0.511) TCGA-DU-6392-01 19 41265336 41265336 C T SNRPA Missense_Mutation p.R83C 0.28 deleterious(0) possibly_damaging(0.626) TCGA-DU-6392-01 19 41292767 41292767 G A RAB4B Missense_Mutation p.E181K 0.21 tolerated(0.13) benign(0.017) TCGA-DU-6392-01 19 41306600 41306600 C A EGLN2 Silent p.P41P 0.14 TCGA-DU-6392-01 19 41307129 41307129 C T EGLN2 Missense_Mutation p.R218C 0.35 deleterious(0.03) possibly_damaging(0.642) TCGA-DU-6392-01 19 41430189 41430189 C T CYP2B7P RNA 0.35 TCGA-DU-6392-01 19 41448108 41448108 G A AC092071.1 5'Flank 0.35 TCGA-DU-6392-01 19 41518713 41518713 C A CYP2B6 Missense_Mutation p.F429L 0.34 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 19 41712473 41712473 C A CYP2S1 3'UTR 0.34 TCGA-DU-6392-01 19 41748813 41748813 C T AXL Silent p.F446F 0.46 TCGA-DU-6392-01 19 41787069 41787069 C T HNRNPUL1 Silent p.G296G 0.52 TCGA-DU-6392-01 19 41925141 41925141 G A BCKDHA Missense_Mutation p.G196S 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 19 42083694 42083694 A G CEACAM21 Silent p.K69K 0.10 TCGA-DU-6392-01 19 42187995 42187995 C T CEACAM7 Splice_Site p.X143_splice 0.32 TCGA-DU-6392-01 19 42213702 42213702 C T CEA Silent p.H56H 0.39 TCGA-DU-6392-01 19 42219608 42219608 C A CEACAM5 Missense_Mutation p.S248Y 0.09 tolerated(1) unknown(0) TCGA-DU-6392-01 19 422274 422274 C A SHC2 Nonsense_Mutation p.E498* 0.18 TCGA-DU-6392-01 19 4224514 4224514 C T ANKRD24 3'UTR 0.45 TCGA-DU-6392-01 19 42341267 42341267 C A LYPD4 Missense_Mutation p.D231Y 0.08 deleterious(0.03) benign(0.029) TCGA-DU-6392-01 19 42365246 42365246 C A RPS19 Missense_Mutation p.A46D 0.09 deleterious(0) probably_damaging(0.945) TCGA-DU-6392-01 19 42396804 42396804 G A ARHGEF1 Silent p.T181T 0.47 TCGA-DU-6392-01 19 42396878 42396878 G A ARHGEF1 Missense_Mutation p.R206Q 0.26 deleterious(0.01) possibly_damaging(0.604) TCGA-DU-6392-01 19 42489540 42489540 G T ATP1A3 Silent p.P227P 0.26 TCGA-DU-6392-01 19 42546742 42546742 C T GRIK5 Missense_Mutation p.G479S 0.50 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 42557982 42557982 G A GRIK5 Missense_Mutation p.R386C 0.24 deleterious(0.02) possibly_damaging(0.6) TCGA-DU-6392-01 19 42584573 42584573 C A ZNF574 Nonsense_Mutation p.Y605* 0.38 TCGA-DU-6392-01 19 42585217 42585217 G A ZNF574 Missense_Mutation p.R820Q 0.32 deleterious(0.02) possibly_damaging(0.857) TCGA-DU-6392-01 19 42596206 42596206 C T POU2F2 Intron 0.50 TCGA-DU-6392-01 19 42730536 42730536 G A ZNF526 Missense_Mutation p.G661R 0.27 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DU-6392-01 19 42795043 42795043 G T CIC Missense_Mutation p.R708M 0.11 possibly_damaging(0.79) TCGA-DU-6392-01 19 42797203 42797203 G A CIC Missense_Mutation p.V1189M 0.43 probably_damaging(0.971) TCGA-DU-6392-01 19 42797910 42797910 G A CIC Missense_Mutation p.R1321H 0.46 probably_damaging(0.964) TCGA-DU-6392-01 19 42801224 42801224 G A PAFAH1B3 3'UTR 0.30 TCGA-DU-6392-01 19 42813973 42813973 C T PRR19 Silent p.H79H 0.32 TCGA-DU-6392-01 19 42827796 42827796 T C TMEM145 Missense_Mutation p.I419T 0.14 tolerated(0.06) possibly_damaging(0.701) TCGA-DU-6392-01 19 42838210 42838210 G A MEGF8 Missense_Mutation p.A135T 0.30 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 19 42840958 42840958 G T MEGF8 Splice_Site p.X415_splice 0.36 TCGA-DU-6392-01 19 42906780 42906780 G A LIPE Silent p.S982S 0.34 TCGA-DU-6392-01 19 43093759 43093759 G A CEACAM8 Missense_Mutation p.L185F 0.42 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 19 43097933 43097933 G T CEACAM8 Missense_Mutation p.P62T 0.40 tolerated(0.2) benign(0.015) TCGA-DU-6392-01 19 4323207 4323207 C A FSD1 Missense_Mutation p.L422M 0.38 deleterious(0.01) possibly_damaging(0.611) TCGA-DU-6392-01 19 43233277 43233277 G A PSG3 Missense_Mutation p.S414F 0.35 tolerated(0.38) benign(0.008) TCGA-DU-6392-01 19 4325454 4325454 C A STAP2 Missense_Mutation p.Q306H 0.29 deleterious(0) possibly_damaging(0.735) TCGA-DU-6392-01 19 4332028 4332028 C T STAP2 Silent p.T115T 0.24 TCGA-DU-6392-01 19 43349387 43349387 C T PSG10P RNA 0.07 TCGA-DU-6392-01 19 43439811 43439811 G A PSG7 Missense_Mutation p.P59S 0.39 tolerated(0.08) probably_damaging(0.998) TCGA-DU-6392-01 19 43529131 43529131 C A PSG11 Missense_Mutation p.G48W 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 4352926 4352926 G A MPND Silent p.L188L 0.25 TCGA-DU-6392-01 19 43570675 43570675 G T PSG2 3'UTR 0.39 TCGA-DU-6392-01 19 436643 436643 G A SHC2 Missense_Mutation p.S254L 0.15 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 19 43708105 43708105 G T PSG4 Silent p.T121T 0.37 TCGA-DU-6392-01 19 43757796 43757796 G A PSG9 Missense_Mutation p.P416S 0.32 deleterious_low_confidence(0) benign(0.004) TCGA-DU-6392-01 19 44096855 44096855 C T IRGQ Missense_Mutation p.G399S 0.47 tolerated(0.35) benign(0.012) TCGA-DU-6392-01 19 44097296 44097296 C T IRGQ Missense_Mutation p.A252T 0.41 deleterious(0.02) possibly_damaging(0.849) TCGA-DU-6392-01 19 44097491 44097491 C T IRGQ Missense_Mutation p.E187K 0.45 deleterious(0.03) probably_damaging(0.997) TCGA-DU-6392-01 19 44152936 44152936 C T PLAUR 3'UTR 0.41 TCGA-DU-6392-01 19 44174294 44174294 C T PLAUR 5'UTR 0.41 TCGA-DU-6392-01 19 44251656 44251656 G A SMG9 Missense_Mutation p.R176C 0.35 deleterious(0.03) benign(0.332) TCGA-DU-6392-01 19 44273958 44273958 C A KCNN4 Silent p.L281L 0.32 TCGA-DU-6392-01 19 4429437 4429437 A G CHAF1A Missense_Mutation p.D536G 0.29 deleterious(0) benign(0.199) TCGA-DU-6392-01 19 4432086 4432086 C A CHAF1A Missense_Mutation p.D695E 0.09 tolerated(0.17) benign(0.05) TCGA-DU-6392-01 19 44339668 44339668 C A ZNF283 Missense_Mutation p.S45Y 0.33 tolerated(0.19) probably_damaging(0.951) TCGA-DU-6392-01 19 44419006 44419006 A G ZNF45 Silent p.C194C 0.38 TCGA-DU-6392-01 19 44471408 44471408 G T ZNF221 Missense_Mutation p.S585I 0.08 deleterious(0) benign(0.312) TCGA-DU-6392-01 19 44471571 44471571 C T ZNF221 3'UTR 0.38 TCGA-DU-6392-01 19 44495784 44495784 C T ZNF155 Nonsense_Mutation p.R45* 0.32 TCGA-DU-6392-01 19 44515547 44515547 C A ZNF230 Missense_Mutation p.D452E 0.31 tolerated(1) benign(0.005) TCGA-DU-6392-01 19 4452490 4452490 C A UBXN6 Splice_Site p.X105_splice 0.38 TCGA-DU-6392-01 19 44531552 44531552 C T ZNF222 Missense_Mutation p.H58Y 0.37 tolerated(0.06) benign(0.011) TCGA-DU-6392-01 19 44536092 44536092 A T ZNF222 Missense_Mutation p.S129C 0.44 deleterious(0.01) possibly_damaging(0.525) TCGA-DU-6392-01 19 44661185 44661185 C T ZNF234 Missense_Mutation p.T339I 0.13 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 44661424 44661424 C A ZNF234 Missense_Mutation p.L419M 0.24 deleterious(0.05) probably_damaging(1) TCGA-DU-6392-01 19 44679883 44679883 C T ZNF226 Silent p.P156P 0.39 TCGA-DU-6392-01 19 44680813 44680813 G T ZNF226 Missense_Mutation p.Q466H 0.11 deleterious(0.02) possibly_damaging(0.69) TCGA-DU-6392-01 19 44793311 44793311 C A ZNF235 Missense_Mutation p.A93S 0.46 tolerated(0.34) benign(0.08) TCGA-DU-6392-01 19 44803800 44803800 C T ZNF235 Missense_Mutation p.R34Q 0.38 tolerated(0.48) possibly_damaging(0.714) TCGA-DU-6392-01 19 44840821 44840821 T A ZNF112 Nonsense_Mutation p.K65* 0.40 TCGA-DU-6392-01 19 44891167 44891167 C T ZNF285 Missense_Mutation p.V414I 0.42 tolerated(0.41) benign(0.061) TCGA-DU-6392-01 19 44891353 44891353 C A ZNF285 Missense_Mutation p.G352W 0.43 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 19 4491791 4491791 C T HDGFRP2 Missense_Mutation p.R213W 0.54 deleterious(0) unknown(0) TCGA-DU-6392-01 19 44933440 44933440 C T ZNF229 Missense_Mutation p.A506T 0.35 tolerated(0.31) benign(0.018) TCGA-DU-6392-01 19 44933907 44933907 C A ZNF229 Missense_Mutation p.R350I 0.41 deleterious(0.01) benign(0.168) TCGA-DU-6392-01 19 44980588 44980588 A - ZNF180 3'UTR 0.13 TCGA-DU-6392-01 19 44980826 44980826 C A ZNF180 Missense_Mutation p.Q624H 0.10 deleterious(0.03) probably_damaging(0.945) TCGA-DU-6392-01 19 4499514 4499514 C T HDGFRP2 Silent p.D534D 0.59 TCGA-DU-6392-01 19 4499545 4499545 C T HDGFRP2 Missense_Mutation p.R545W 0.19 deleterious(0) unknown(0) TCGA-DU-6392-01 19 4510834 4510834 G A PLIN4 Silent p.H1032H 0.13 TCGA-DU-6392-01 19 4510998 4510998 C T PLIN4 Missense_Mutation p.G978S 0.34 tolerated(0.08) benign(0.107) TCGA-DU-6392-01 19 4512219 4512219 T G PLIN4 Missense_Mutation p.T571P 0.06 tolerated(0.07) possibly_damaging(0.883) TCGA-DU-6392-01 19 4513206 4513206 C T PLIN4 Missense_Mutation p.G242S 0.08 tolerated(0.06) probably_damaging(0.927) TCGA-DU-6392-01 19 45202520 45202520 C T CEACAM16 5'UTR 0.50 TCGA-DU-6392-01 19 45209106 45209106 C A CEACAM16 Missense_Mutation p.S303Y 0.33 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 19 4523452 4523452 G T PLIN5 3'UTR 0.28 TCGA-DU-6392-01 19 45296783 45296783 A T CBLC Missense_Mutation p.E397V 0.42 deleterious(0.01) benign(0.315) TCGA-DU-6392-01 19 45322860 45322860 C A BCAM Missense_Mutation p.A547D 0.36 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 19 45411875 45411875 C T APOE Missense_Mutation p.R108W 0.45 deleterious(0.01) probably_damaging(0.984) TCGA-DU-6392-01 19 45445551 45445551 A T APOC4 Missense_Mutation p.N6I 0.54 tolerated(0.39) benign(0.075) TCGA-DU-6392-01 19 45448728 45448728 C A APOC4 3'UTR 0.40 TCGA-DU-6392-01 19 4550817 4550817 C T SEMA6B Missense_Mutation p.R372Q 0.40 tolerated(0.07) benign(0.007) TCGA-DU-6392-01 19 45593756 45593756 C A GEMIN7 Silent p.T128T 0.29 TCGA-DU-6392-01 19 45781872 45781872 T C MARK4 Silent p.I335I 0.08 TCGA-DU-6392-01 19 45811737 45811737 C T CKM Missense_Mutation p.R236Q 0.39 deleterious(0.01) probably_damaging(0.932) TCGA-DU-6392-01 19 45856054 45856054 C T ERCC2 Missense_Mutation p.V618I 0.31 deleterious(0.01) possibly_damaging(0.863) TCGA-DU-6392-01 19 45923673 45923673 C T ERCC1 Missense_Mutation p.V112I 0.39 tolerated(0.32) benign(0.073) TCGA-DU-6392-01 19 45988979 45988979 G T RTN2 Missense_Mutation p.A542D 0.32 deleterious_low_confidence(0.02) unknown(0) TCGA-DU-6392-01 19 46094078 46094078 C A GPR4 Missense_Mutation p.Q349H 0.10 tolerated(0.12) benign(0.058) TCGA-DU-6392-01 19 46142120 46142120 T G EML2 Missense_Mutation p.E212A 0.38 deleterious(0.01) possibly_damaging(0.794) TCGA-DU-6392-01 19 46181440 46181440 C T GIPR Missense_Mutation p.R370C 0.50 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 46215271 46215271 C T FBXO46 Missense_Mutation p.A495T 0.25 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 19 46280785 46280785 G A DMPK Missense_Mutation p.R326W 0.47 deleterious(0) possibly_damaging(0.812) TCGA-DU-6392-01 19 46289657 46289657 C A DMWD Missense_Mutation p.G366V 0.42 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 19 46331149 46331149 C T SYMPK Silent p.A671A 0.34 TCGA-DU-6392-01 19 46345528 46345528 G A SYMPK Missense_Mutation p.T356I 0.33 tolerated(0.12) benign(0.032) TCGA-DU-6392-01 19 46351106 46351106 G T SYMPK Missense_Mutation p.L194M 0.16 tolerated(0.13) possibly_damaging(0.474) TCGA-DU-6392-01 19 46387584 46387584 G A IRF2BP1 Silent p.A483A 0.33 TCGA-DU-6392-01 19 463999 463999 C T ODF3L2 Missense_Mutation p.G239S 0.40 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 19 46417658 46417658 A G NANOS2 Silent p.C98C 0.14 TCGA-DU-6392-01 19 46417729 46417729 C T NANOS2 Missense_Mutation p.V75I 0.33 tolerated(0.77) probably_damaging(0.997) TCGA-DU-6392-01 19 46627142 46627142 C T IGFL3 Splice_Site p.X117_splice 0.05 TCGA-DU-6392-01 19 46815864 46815864 C T HIF3A Missense_Mutation p.R327W 0.42 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 19 4682774 4682774 G T DPP9 Missense_Mutation p.P803H 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 4697661 4697661 G A DPP9 Silent p.I359I 0.32 TCGA-DU-6392-01 19 47193909 47193909 C T PRKD2 Missense_Mutation p.R586H 0.25 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 19 47228077 47228077 G T STRN4 Silent p.P534P 0.39 TCGA-DU-6392-01 19 47228890 47228890 C A STRN4 Missense_Mutation p.D429Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 47422504 47422505 - A ARHGAP35 Frame_Shift_Ins p.P194Afs*8 0.26 TCGA-DU-6392-01 19 47424716 47424716 G T ARHGAP35 Missense_Mutation p.Q928H 0.08 tolerated(0.93) possibly_damaging(0.62) TCGA-DU-6392-01 19 47572365 47572365 G A ZC3H4 Silent p.D794D 0.37 TCGA-DU-6392-01 19 47572495 47572495 C T ZC3H4 Missense_Mutation p.R751Q 0.53 unknown(0) TCGA-DU-6392-01 19 47575268 47575268 G A ZC3H4 Missense_Mutation p.P638L 0.75 unknown(0) TCGA-DU-6392-01 19 47824116 47824116 G A C5AR1 3'UTR 0.47 TCGA-DU-6392-01 19 47844828 47844828 G A C5AR2 Missense_Mutation p.V258M 0.44 tolerated(0.23) benign(0.054) TCGA-DU-6392-01 19 47865756 47865756 G A DHX34 Missense_Mutation p.D467N 0.38 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 19 47879311 47879311 C T DHX34 Missense_Mutation p.A813V 0.33 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 19 47920151 47920151 G A MEIS3 Silent p.D85D 0.50 TCGA-DU-6392-01 19 47940750 47940750 C T SLC8A2 Silent p.E693E 0.42 TCGA-DU-6392-01 19 47960708 47960708 C T SLC8A2 Silent p.E273E 0.67 TCGA-DU-6392-01 19 47969296 47969296 C T SLC8A2 Missense_Mutation p.R122H 0.25 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 47969326 47969326 G A SLC8A2 Missense_Mutation p.A112V 0.51 deleterious(0.03) possibly_damaging(0.816) TCGA-DU-6392-01 19 47986473 47986473 C A KPTN Splice_Site p.X132_splice 0.29 TCGA-DU-6392-01 19 47996794 47996794 C A NAPA Intron 0.36 TCGA-DU-6392-01 19 48389406 48389406 C T SULT2A1 Missense_Mutation p.V37I 0.06 tolerated(0.82) benign(0.075) TCGA-DU-6392-01 19 48389603 48389603 G T SULT2A1 5'UTR 0.39 TCGA-DU-6392-01 19 48543905 48543905 C T CABP5 Silent p.T65T 0.34 TCGA-DU-6392-01 19 48556225 48556225 C T PLA2G4C Intron 0.15 TCGA-DU-6392-01 19 48565309 48565309 C T PLA2G4C Silent p.T411T 0.12 TCGA-DU-6392-01 19 48608606 48608606 C A PLA2G4C Missense_Mutation p.R45M 0.33 tolerated(0.05) benign(0.195) TCGA-DU-6392-01 19 48665519 48665519 T G LIG1 Missense_Mutation p.K36T 0.37 deleterious_low_confidence(0.04) benign(0.118) TCGA-DU-6392-01 19 48848500 48848500 G A TMEM143 Silent p.L161L 0.41 TCGA-DU-6392-01 19 4891208 4891208 G A ARRDC5 Silent p.Y293Y 0.40 TCGA-DU-6392-01 19 48918275 48918275 G A GRIN2D Missense_Mutation p.G523S 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-DU-6392-01 19 48945130 48945130 C T GRIN2D Missense_Mutation p.T786M 0.25 tolerated(0.27) probably_damaging(0.983) TCGA-DU-6392-01 19 48955977 48955977 G A GRWD1 Missense_Mutation p.V346M 0.31 deleterious(0) possibly_damaging(0.84) TCGA-DU-6392-01 19 48956129 48956129 C T GRWD1 Silent p.A396A 0.25 TCGA-DU-6392-01 19 48967961 48967961 G A KCNJ14 Missense_Mutation p.G413E 0.38 tolerated(0.68) probably_damaging(0.946) TCGA-DU-6392-01 19 48981590 48981590 A G CYTH2 Missense_Mutation p.D315G 0.35 deleterious(0.03) possibly_damaging(0.472) TCGA-DU-6392-01 19 49104456 49104456 G A FAM83E Silent p.F449F 0.41 TCGA-DU-6392-01 19 49142710 49142710 G A CA11 Missense_Mutation p.A216V 0.26 deleterious(0.04) benign(0.2) TCGA-DU-6392-01 19 49206262 49206262 C A FUT2 Missense_Mutation p.L17I 0.07 tolerated_low_confidence(0.15) benign(0.009) TCGA-DU-6392-01 19 49206500 49206500 C T FUT2 Missense_Mutation p.P96L 0.41 tolerated(1) benign(0.19) TCGA-DU-6392-01 19 49249026 49249026 G T IZUMO1 Missense_Mutation p.L31M 0.09 tolerated(0.06) possibly_damaging(0.747) TCGA-DU-6392-01 19 49254308 49254308 G T FUT1 Silent p.L77L 0.20 TCGA-DU-6392-01 19 49376947 49376947 G T PPP1R15A Missense_Mutation p.G153C 0.35 deleterious(0.01) possibly_damaging(0.829) TCGA-DU-6392-01 19 49385367 49385367 C T TULP2 Missense_Mutation p.G457S 0.40 tolerated(0.13) possibly_damaging(0.695) TCGA-DU-6392-01 19 49422336 49422336 T C NUCB1 Missense_Mutation p.M289T 0.12 deleterious(0.04) possibly_damaging(0.811) TCGA-DU-6392-01 19 49422352 49422352 G A NUCB1 Silent p.L294L 0.26 TCGA-DU-6392-01 19 49425704 49425704 G T NUCB1 3'UTR 0.36 TCGA-DU-6392-01 19 49425735 49425735 C T NUCB1 3'UTR 0.36 TCGA-DU-6392-01 19 49496323 49496323 T C GYS1 Missense_Mutation p.E16G 0.11 tolerated(0.25) benign(0.417) TCGA-DU-6392-01 19 49593547 49593547 G T SNRNP70 Splice_Site p.X50_splice 0.44 TCGA-DU-6392-01 19 49593597 49593597 G A SNRNP70 Missense_Mutation p.R66H 0.20 deleterious(0.01) possibly_damaging(0.792) TCGA-DU-6392-01 19 49610962 49610962 G A SNRNP70 Missense_Mutation p.D220N 0.55 deleterious(0.01) possibly_damaging(0.691) TCGA-DU-6392-01 19 49621655 49621655 G A LIN7B 3'UTR 0.37 TCGA-DU-6392-01 19 49657374 49657374 A G HRC Missense_Mutation p.V374A 0.32 tolerated(0.42) benign(0) TCGA-DU-6392-01 19 49658016 49658016 T C HRC Missense_Mutation p.H160R 0.23 tolerated(0.09) benign(0.003) TCGA-DU-6392-01 19 49658019 49658019 C A HRC Missense_Mutation p.S159I 0.17 deleterious(0) possibly_damaging(0.766) TCGA-DU-6392-01 19 49658411 49658411 C A HRC Missense_Mutation p.Q28H 0.09 deleterious(0) probably_damaging(0.948) TCGA-DU-6392-01 19 49671579 49671579 C T TRPM4 Missense_Mutation p.R171W 0.41 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 19 49685991 49685991 C T TRPM4 Missense_Mutation p.R474C 0.39 tolerated(0.14) benign(0.004) TCGA-DU-6392-01 19 49812102 49812102 C T SLC6A16 Intron 0.37 TCGA-DU-6392-01 19 49840409 49840409 T C CD37 Silent p.F91F 0.08 TCGA-DU-6392-01 19 49951093 49951093 G A PIH1D1 Silent p.L158L 0.32 TCGA-DU-6392-01 19 49993743 49993743 G A RPL13A Missense_Mutation p.A56T 0.50 tolerated(0.19) benign(0.377) TCGA-DU-6392-01 19 50001210 50001210 T C RPS11 Missense_Mutation p.V87A 0.21 deleterious(0.03) benign(0.335) TCGA-DU-6392-01 19 50062189 50062189 G A NOSIP Silent p.L75L 0.08 TCGA-DU-6392-01 19 50086827 50086827 G T PRRG2 Missense_Mutation p.Q38H 0.24 tolerated(0.23) benign(0.015) TCGA-DU-6392-01 19 50098071 50098071 G A PRR12 Missense_Mutation p.R160H 0.35 possibly_damaging(0.715) TCGA-DU-6392-01 19 50155744 50155744 G A SCAF1 Missense_Mutation p.A700T 0.45 unknown(0) TCGA-DU-6392-01 19 50169047 50169047 T G IRF3 5'UTR 0.33 TCGA-DU-6392-01 19 50193108 50193108 T A ADM5 Missense_Mutation p.I5N 0.43 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-DU-6392-01 19 50209545 50209545 G A CPT1C Silent p.E406E 0.19 TCGA-DU-6392-01 19 50209622 50209622 C T CPT1C Missense_Mutation p.S432L 0.55 tolerated(0.09) possibly_damaging(0.675) TCGA-DU-6392-01 19 50285229 50285229 T C AP2A1 Silent p.S54S 0.55 TCGA-DU-6392-01 19 50302934 50302934 G A AP2A1 Missense_Mutation p.A395T 0.29 deleterious(0.03) benign(0.389) TCGA-DU-6392-01 19 50309432 50309432 C T AP2A1 Silent p.F926F 0.45 TCGA-DU-6392-01 19 5032937 5032937 C A KDM4B Missense_Mutation p.S12R 0.07 benign(0.293) TCGA-DU-6392-01 19 50386140 50386140 C A TBC1D17 Silent p.I306I 0.21 TCGA-DU-6392-01 19 50387952 50387952 C T TBC1D17 Missense_Mutation p.R461W 0.33 deleterious(0.02) probably_damaging(0.953) TCGA-DU-6392-01 19 50461747 50461747 C T SIGLEC11 Missense_Mutation p.A482T 0.33 tolerated(0.09) possibly_damaging(0.773) TCGA-DU-6392-01 19 50463907 50463907 G A SIGLEC11 Missense_Mutation p.A121V 0.33 tolerated(0.25) benign(0.059) TCGA-DU-6392-01 19 50463908 50463908 C T SIGLEC11 Missense_Mutation p.A121T 0.35 deleterious(0.01) possibly_damaging(0.631) TCGA-DU-6392-01 19 50475318 50475318 G A VRK3 3'Flank 0.42 TCGA-DU-6392-01 19 50482412 50482412 G A VRK3 Missense_Mutation p.A455V 0.32 tolerated(0.11) benign(0.023) TCGA-DU-6392-01 19 50500782 50500782 G A VRK3 Missense_Mutation p.R220W 0.64 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 50550015 50550015 G A ZNF473 Missense_Mutation p.C772Y 0.43 tolerated(0.18) benign(0.384) TCGA-DU-6392-01 19 50720971 50720971 G A MYH14 Missense_Mutation p.E169K 0.43 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 19 50826570 50826570 G A KCNC3 Missense_Mutation p.S547L 0.32 deleterious(0) possibly_damaging(0.865) TCGA-DU-6392-01 19 50864365 50864365 G A NAPSA Silent p.F167F 0.16 TCGA-DU-6392-01 19 50881013 50881013 G A NR1H2 Missense_Mutation p.A23T 0.35 tolerated(0.76) unknown(0) TCGA-DU-6392-01 19 50918728 50918728 C T POLD1 Silent p.D866D 0.34 TCGA-DU-6392-01 19 50939873 50939873 G T MYBPC2 Splice_Site p.X116_splice 0.34 TCGA-DU-6392-01 19 50940757 50940757 G T MYBPC2 Missense_Mutation p.S164I 0.40 tolerated(1) benign(0.001) TCGA-DU-6392-01 19 50964891 50964891 C T MYBPC2 Silent p.T1008T 0.50 TCGA-DU-6392-01 19 51015686 51015686 G A ASPDH Missense_Mutation p.A195V 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 51021413 51021413 G A LRRC4B Silent p.D519D 0.56 TCGA-DU-6392-01 19 51022065 51022065 C T LRRC4B Missense_Mutation p.R302H 0.39 tolerated(0.45) benign(0.007) TCGA-DU-6392-01 19 51022514 51022514 C A LRRC4B Missense_Mutation p.Q152H 0.33 tolerated(0.15) benign(0.008) TCGA-DU-6392-01 19 51132654 51132654 G A SYT3 Missense_Mutation p.S393L 0.33 deleterious(0) probably_damaging(0.961) TCGA-DU-6392-01 19 51169592 51169592 G T SHANK1 Missense_Mutation p.S1875R 0.29 unknown(0) TCGA-DU-6392-01 19 51190044 51190044 C T SHANK1 Silent p.V805V 0.26 TCGA-DU-6392-01 19 51274083 51274083 G A GPR32 Missense_Mutation p.V76I 0.35 tolerated(0.05) possibly_damaging(0.501) TCGA-DU-6392-01 19 51323632 51323632 C T KLK1 Missense_Mutation p.V92I 0.34 tolerated(0.06) benign(0.171) TCGA-DU-6392-01 19 51411961 51411961 G T KLK4 Missense_Mutation p.L117I 0.11 tolerated(0.51) possibly_damaging(0.626) TCGA-DU-6392-01 19 51452340 51452340 G T KLK5 Missense_Mutation p.L123M 0.21 tolerated(0.13) probably_damaging(0.991) TCGA-DU-6392-01 19 51527961 51527961 G A KLK11 Missense_Mutation p.R76W 0.41 deleterious(0) possibly_damaging(0.887) TCGA-DU-6392-01 19 51530789 51530789 G A KLK11 5'UTR 0.39 TCGA-DU-6392-01 19 51530829 51530829 G A KLK11 5'UTR 0.15 TCGA-DU-6392-01 19 51559997 51559997 T C KLK13 Silent p.T227T 0.10 TCGA-DU-6392-01 19 51728765 51728765 G T CD33 Missense_Mutation p.R110M 0.10 tolerated(0.21) possibly_damaging(0.771) TCGA-DU-6392-01 19 51828610 51828610 C T IGLON5 Silent p.R134R 0.30 TCGA-DU-6392-01 19 51871826 51871826 C T CLDND2 Silent p.G2G 0.48 TCGA-DU-6392-01 19 51955822 51955822 G T SIGLEC8 Silent p.P437P 0.15 TCGA-DU-6392-01 19 51958909 51958909 A C SIGLEC8 Missense_Mutation p.S272A 0.09 tolerated(0.51) possibly_damaging(0.447) TCGA-DU-6392-01 19 51961369 51961369 C A SIGLEC8 Missense_Mutation p.E91D 0.33 tolerated(0.09) benign(0.021) TCGA-DU-6392-01 19 51961460 51961460 G A SIGLEC8 Missense_Mutation p.P61L 0.41 deleterious(0.03) possibly_damaging(0.465) TCGA-DU-6392-01 19 52004674 52004674 G A SIGLEC12 Missense_Mutation p.T105I 0.39 deleterious(0) possibly_damaging(0.879) TCGA-DU-6392-01 19 52032990 52032990 G A SIGLEC6 Missense_Mutation p.L334F 0.64 deleterious(0.02) probably_damaging(0.995) TCGA-DU-6392-01 19 52091117 52091117 C A ZNF175 Silent p.T511T 0.37 TCGA-DU-6392-01 19 52091537 52091537 G A ZNF175 Silent p.S651S 0.37 TCGA-DU-6392-01 19 5210574 5210574 C T PTPRS Missense_Mutation p.R1798H 0.17 deleterious(0.03) possibly_damaging(0.753) TCGA-DU-6392-01 19 52272593 52272593 A C FPR2 Missense_Mutation p.I228L 0.49 tolerated(0.36) benign(0.032) TCGA-DU-6392-01 19 52376558 52376558 G T ZNF577 Missense_Mutation p.L229I 0.33 deleterious(0) possibly_damaging(0.785) TCGA-DU-6392-01 19 52376920 52376920 G T ZNF577 Missense_Mutation p.S108Y 0.14 tolerated(0.32) probably_damaging(0.99) TCGA-DU-6392-01 19 52394115 52394115 G A ZNF649 Missense_Mutation p.T425M 0.40 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 19 52394292 52394292 C A ZNF649 Missense_Mutation p.R366I 0.38 deleterious(0) probably_damaging(0.925) TCGA-DU-6392-01 19 5240339 5240339 C T PTPRS Silent p.P525P 0.21 TCGA-DU-6392-01 19 52448086 52448086 G A ZNF613 Missense_Mutation p.G317E 0.37 tolerated(0.98) benign(0.02) TCGA-DU-6392-01 19 52448197 52448197 G A ZNF613 Missense_Mutation p.R354H 0.49 tolerated(0.53) benign(0.052) TCGA-DU-6392-01 19 52448941 52448941 C A ZNF613 Missense_Mutation p.P602H 0.41 deleterious(0.01) benign(0.066) TCGA-DU-6392-01 19 52468952 52468952 G A ZNF350 Missense_Mutation p.H252Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 19 52569224 52569224 G T ZNF841 Nonsense_Mutation p.Y637* 0.08 TCGA-DU-6392-01 19 52569880 52569880 G A ZNF841 Missense_Mutation p.H419Y 0.21 deleterious(0) benign(0.33) TCGA-DU-6392-01 19 52570128 52570128 C T ZNF841 Missense_Mutation p.R336Q 0.39 tolerated(0.84) benign(0.001) TCGA-DU-6392-01 19 52588088 52588088 G A ZNF841 5'UTR 0.33 TCGA-DU-6392-01 19 52660166 52660166 C T ZNF836 Missense_Mutation p.R257Q 0.42 tolerated(0.63) benign(0.002) TCGA-DU-6392-01 19 52785424 52785424 G T ZNF766 Missense_Mutation p.D27Y 0.10 deleterious(0) possibly_damaging(0.868) TCGA-DU-6392-01 19 52793382 52793382 C T ZNF766 Missense_Mutation p.T113I 0.49 deleterious(0.05) benign(0.032) TCGA-DU-6392-01 19 52825153 52825153 G T ZNF480 Missense_Mutation p.S217I 0.30 tolerated(0.39) probably_damaging(0.928) TCGA-DU-6392-01 19 52887684 52887684 C T ZNF880 Missense_Mutation p.A284V 0.17 tolerated(0.5) benign(0.002) TCGA-DU-6392-01 19 52909181 52909181 G A ZNF528 Missense_Mutation p.V13M 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 52909767 52909767 G T ZNF528 Splice_Site p.X48_splice 0.18 TCGA-DU-6392-01 19 52909844 52909844 G T ZNF528 Missense_Mutation p.E73D 0.23 tolerated(0.24) benign(0.071) TCGA-DU-6392-01 19 53007958 53007958 G T ZNF578 Missense_Mutation p.W38C 0.35 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 19 53050821 53050821 C A ZNF808 Missense_Mutation p.F40L 0.34 deleterious(0.03) benign(0.067) TCGA-DU-6392-01 19 53057913 53057913 C A ZNF808 Missense_Mutation p.L582I 0.32 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 19 53085781 53085781 G A ZNF701 Missense_Mutation p.E223K 0.44 tolerated(0.24) possibly_damaging(0.805) TCGA-DU-6392-01 19 53117236 53117236 T G ZNF83 Missense_Mutation p.Q194H 0.36 tolerated(0.2) probably_damaging(0.994) TCGA-DU-6392-01 19 53208596 53208596 C T ZNF611 Missense_Mutation p.C571Y 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 19 53270475 53270475 C T ZNF600 Silent p.R178R 0.36 TCGA-DU-6392-01 19 53304598 53304598 G T ZNF28 Missense_Mutation p.S167Y 0.24 deleterious(0) possibly_damaging(0.896) TCGA-DU-6392-01 19 53345338 53345338 T C ZNF468 Missense_Mutation p.H70R 0.07 tolerated(0.07) benign(0.005) TCGA-DU-6392-01 19 53571786 53571786 A G ZNF160 Silent p.H667H 0.09 TCGA-DU-6392-01 19 53573045 53573045 G A ZNF160 Nonsense_Mutation p.R248* 0.34 TCGA-DU-6392-01 19 53643498 53643498 G A ZNF347 3'UTR 0.14 TCGA-DU-6392-01 19 53643864 53643864 G A ZNF347 Silent p.C740C 0.40 TCGA-DU-6392-01 19 53644945 53644945 C A ZNF347 Missense_Mutation p.G380V 0.09 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 19 53645134 53645134 C T ZNF347 Missense_Mutation p.R317H 0.45 tolerated(0.06) possibly_damaging(0.706) TCGA-DU-6392-01 19 53668594 53668594 G A ZNF665 Silent p.F383F 0.38 TCGA-DU-6392-01 19 53668654 53668654 C A ZNF665 Missense_Mutation p.K363N 0.15 tolerated(0.53) benign(0.002) TCGA-DU-6392-01 19 53668765 53668765 G T ZNF665 Silent p.A326A 0.07 TCGA-DU-6392-01 19 53740687 53740687 G A ZNF677 Silent p.H431H 0.30 TCGA-DU-6392-01 19 53856014 53856014 T G ZNF845 Missense_Mutation p.C696G 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-DU-6392-01 19 53856301 53856301 A G ZNF845 Silent p.A791A 0.45 TCGA-DU-6392-01 19 53856843 53856843 A C ZNF845 3'UTR 0.46 TCGA-DU-6392-01 19 53884421 53884421 C T ZNF525 Silent p.L197L 0.34 TCGA-DU-6392-01 19 53911139 53911139 G A ZNF765 Missense_Mutation p.A111T 0.36 tolerated(0.27) possibly_damaging(0.858) TCGA-DU-6392-01 19 53912162 53912162 A C ZNF765 Missense_Mutation p.N452H 0.38 tolerated(0.97) benign(0.003) TCGA-DU-6392-01 19 53912265 53912265 G T ZNF765 Missense_Mutation p.R486I 0.09 tolerated(0.08) possibly_damaging(0.698) TCGA-DU-6392-01 19 53959491 53959491 C A ZNF761 RNA 0.43 TCGA-DU-6392-01 19 53959722 53959722 G T ZNF761 RNA 0.09 TCGA-DU-6392-01 19 54081145 54081145 G A ZNF331 Missense_Mutation p.C444Y 0.45 deleterious(0) benign(0.197) TCGA-DU-6392-01 19 54204498 54204498 C A MIR520B RNA 0.09 TCGA-DU-6392-01 19 54216613 54216613 A G MIR519D RNA 0.38 TCGA-DU-6392-01 19 54234339 54234339 T G MIR518A1 RNA 0.41 TCGA-DU-6392-01 19 54264467 54264467 C T MIR516A2 RNA 0.37 TCGA-DU-6392-01 19 54314193 54314193 G C NLRP12 Missense_Mutation p.F240L 0.28 deleterious(0) possibly_damaging(0.844) TCGA-DU-6392-01 19 54418628 54418628 G A CACNG7 Missense_Mutation p.R98H 0.23 deleterious(0) probably_damaging(0.946) TCGA-DU-6392-01 19 54445390 54445390 G A CACNG7 Missense_Mutation p.C224Y 0.14 deleterious(0) possibly_damaging(0.62) TCGA-DU-6392-01 19 54625310 54625310 G A PRPF31 Missense_Mutation p.E104K 0.29 deleterious(0) benign(0.294) TCGA-DU-6392-01 19 54695428 54695428 C A TSEN34 Silent p.A71A 0.37 TCGA-DU-6392-01 19 54723078 54723078 G A LILRB3 Missense_Mutation p.S449L 0.36 tolerated(0.27) possibly_damaging(0.855) TCGA-DU-6392-01 19 54742904 54742904 G T LILRA6 Silent p.V457V 0.37 TCGA-DU-6392-01 19 54745686 54745686 G T LILRA6 Missense_Mutation p.L142I 0.29 deleterious(0.02) possibly_damaging(0.769) TCGA-DU-6392-01 19 54758880 54758880 C T LILRB5 Missense_Mutation p.A325T 0.31 deleterious(0.02) benign(0.015) TCGA-DU-6392-01 19 54800090 54800090 G T LILRA3 Missense_Mutation p.L426I 0.11 tolerated(0.48) benign(0.002) TCGA-DU-6392-01 19 54963829 54963829 G A LENG8 Splice_Site p.X72_splice 0.31 TCGA-DU-6392-01 19 54969112 54969112 G T LENG8 Splice_Site p.X612_splice 0.11 TCGA-DU-6392-01 19 54973788 54973788 C T LENG9 Missense_Mutation p.E330K 0.44 deleterious(0.03) possibly_damaging(0.699) TCGA-DU-6392-01 19 55146618 55146618 G A LILRB1 Missense_Mutation p.G517D 0.27 tolerated(0.06) benign(0.021) TCGA-DU-6392-01 19 55148190 55148190 C T LILRB1 Missense_Mutation p.A607V 0.23 deleterious(0.03) possibly_damaging(0.864) TCGA-DU-6392-01 19 55175251 55175251 C A LILRB4 Missense_Mutation p.S37Y 0.34 deleterious(0.02) probably_damaging(0.944) TCGA-DU-6392-01 19 55250031 55250031 C A KIR2DL3 Missense_Mutation p.S7R 0.71 deleterious(0.01) possibly_damaging(0.567) TCGA-DU-6392-01 19 55331358 55331358 C T KIR3DL1 Silent p.I182I 0.27 TCGA-DU-6392-01 19 55344193 55344193 C T KIR3DL1 3'Flank 0.31 TCGA-DU-6392-01 19 55445085 55445085 C T NLRP7 Missense_Mutation p.E832K 0.31 tolerated(0.11) benign(0.126) TCGA-DU-6392-01 19 55508792 55508792 C A NLRP2 Missense_Mutation p.S996Y 0.41 tolerated(1) benign(0.007) TCGA-DU-6392-01 19 55526304 55526304 G A GP6 Missense_Mutation p.R337W 0.40 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-DU-6392-01 19 55556517 55556517 C A RDH13 Silent p.R307R 0.10 TCGA-DU-6392-01 19 55590426 55590426 G A EPS8L1 Splice_Site p.X39_splice 0.35 TCGA-DU-6392-01 19 55597258 55597258 G T EPS8L1 Missense_Mutation p.A479S 0.37 tolerated(0.52) benign(0.014) TCGA-DU-6392-01 19 55607520 55607520 C T PPP1R12C Missense_Mutation p.R351H 0.08 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 19 55670321 55670321 A G DNAAF3 3'UTR 0.50 TCGA-DU-6392-01 19 55686268 55686268 C T SYT5 Missense_Mutation p.D270N 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 19 55693505 55693505 C T PTPRH Missense_Mutation p.R1026H 0.21 probably_damaging(0.965) TCGA-DU-6392-01 19 55702874 55702874 G T PTPRH Silent p.V793V 0.07 TCGA-DU-6392-01 19 5590372 5590372 G A SAFB2 Silent p.H814H 0.22 TCGA-DU-6392-01 19 55994999 55994999 G A ZNF628 Silent p.Q813Q 0.09 TCGA-DU-6392-01 19 56103882 56103882 G A FIZ1 Silent p.C475C 0.45 TCGA-DU-6392-01 19 56160635 56160635 G T CCDC106 Missense_Mutation p.Q32H 0.09 tolerated(0.3) benign(0.003) TCGA-DU-6392-01 19 56300722 56300722 C T NLRP11 Missense_Mutation p.A853T 0.30 deleterious(0.03) possibly_damaging(0.79) TCGA-DU-6392-01 19 56312942 56312942 G T NLRP11 Missense_Mutation p.L723M 0.32 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 19 56320975 56320975 C T NLRP11 Missense_Mutation p.G334D 0.09 tolerated(0.82) benign(0.001) TCGA-DU-6392-01 19 56363645 56363645 C T NLRP4 Nonsense_Mutation p.Q67* 0.42 TCGA-DU-6392-01 19 56369066 56369066 G A NLRP4 Missense_Mutation p.A103T 0.52 tolerated(0.18) benign(0.031) TCGA-DU-6392-01 19 56424591 56424591 G A NLRP13 Missense_Mutation p.P198S 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 19 56459555 56459555 G A NLRP8 Missense_Mutation p.R96H 0.57 tolerated(0.13) possibly_damaging(0.719) TCGA-DU-6392-01 19 56487536 56487536 G T NLRP8 Missense_Mutation p.D915Y 0.40 tolerated(0.6) benign(0.069) TCGA-DU-6392-01 19 56572787 56572787 C T NLRP5 Nonsense_Mutation p.Q1166* 0.13 TCGA-DU-6392-01 19 56701162 56701162 T G ZSCAN5B 3'UTR 0.36 TCGA-DU-6392-01 19 56734042 56734042 C T ZSCAN5A Silent p.Q219Q 0.45 TCGA-DU-6392-01 19 5684801 5684801 G A HSD11B1L Intron 0.45 TCGA-DU-6392-01 19 5691360 5691360 G A RPL36 Missense_Mutation p.D42N 0.30 tolerated(0.11) benign(0.25) TCGA-DU-6392-01 19 56925731 56925731 C A ZNF583 Missense_Mutation p.P52T 0.27 deleterious(0) benign(0.412) TCGA-DU-6392-01 19 56935667 56935667 T C ZNF583 Missense_Mutation p.F547S 0.11 tolerated(0.71) benign(0.328) TCGA-DU-6392-01 19 56952429 56952429 C T ZNF667 3'UTR 0.44 TCGA-DU-6392-01 19 56972075 56972075 C T ZNF667 Missense_Mutation p.R48Q 0.26 tolerated(0.91) benign(0.001) TCGA-DU-6392-01 19 5700874 5700874 G T LONP1 Missense_Mutation p.L478M 0.10 tolerated(0.06) benign(0.378) TCGA-DU-6392-01 19 5700881 5700881 G A LONP1 Silent p.N475N 0.35 TCGA-DU-6392-01 19 57029857 57029857 G A ZNF471 Missense_Mutation p.C56Y 0.38 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 19 57036320 57036320 G A ZNF471 Missense_Mutation p.C295Y 0.32 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 19 57089032 57089032 T G ZNF470 Missense_Mutation p.L412R 0.10 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 19 57089730 57089730 G T ZNF470 Nonsense_Mutation p.G645* 0.14 TCGA-DU-6392-01 19 57133187 57133187 C A ZNF71 Silent p.R178R 0.39 TCGA-DU-6392-01 19 57134091 57134091 C T ZNF71 Missense_Mutation p.T479M 0.32 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 19 57176010 57176010 C T ZNF835 Missense_Mutation p.R186H 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-DU-6392-01 19 57176606 57176606 C A ZNF835 5'UTR 0.29 TCGA-DU-6392-01 19 57333113 57333113 G A PEG3 Missense_Mutation p.P192L 0.45 tolerated(0.06) benign(0.079) TCGA-DU-6392-01 19 5754220 5754220 G A CATSPERD Silent p.S414S 0.45 TCGA-DU-6392-01 19 57641354 57641354 T A USP29 Silent p.I437I 0.11 TCGA-DU-6392-01 19 57641872 57641872 G A USP29 Missense_Mutation p.C610Y 0.30 tolerated(1) benign(0.351) TCGA-DU-6392-01 19 57723301 57723301 G A ZNF264 Missense_Mutation p.R279Q 0.40 deleterious(0.02) probably_damaging(0.962) TCGA-DU-6392-01 19 57755401 57755401 G A ZNF805 Silent p.G47G 0.39 TCGA-DU-6392-01 19 5778417 5778417 C A CATSPERD Silent p.I709I 0.09 TCGA-DU-6392-01 19 5778489 5778489 C T CATSPERD Silent p.I733I 0.38 TCGA-DU-6392-01 19 5783234 5783234 C T PRR22 Missense_Mutation p.V342M 0.37 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 57835094 57835094 G T ZNF543 Missense_Mutation p.E21D 0.07 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 57865197 57865197 C A ZNF304 Missense_Mutation p.N46K 0.44 deleterious(0) possibly_damaging(0.824) TCGA-DU-6392-01 19 5788144 5788144 G A DUS3L Missense_Mutation p.A329V 0.36 tolerated(0.07) probably_damaging(0.98) TCGA-DU-6392-01 19 57888885 57888885 G T ZNF547 Nonsense_Mutation p.E181* 0.34 TCGA-DU-6392-01 19 57955361 57955361 G - ZNF749 Frame_Shift_Del p.R282Sfs*148 0.28 TCGA-DU-6392-01 19 57988041 57988041 C A ZNF772 Splice_Site p.X12_splice 0.38 TCGA-DU-6392-01 19 58049264 58049264 C T ZNF549 Missense_Mutation p.H298Y 0.40 deleterious(0.03) probably_damaging(0.976) TCGA-DU-6392-01 19 58049682 58049682 G A ZNF549 Missense_Mutation p.R437K 0.42 tolerated(0.19) possibly_damaging(0.585) TCGA-DU-6392-01 19 58102102 58102102 C A ZIK1 Missense_Mutation p.S308Y 0.14 tolerated(0.15) possibly_damaging(0.557) TCGA-DU-6392-01 19 58131538 58131538 T C ZNF134 Silent p.H17H 0.09 TCGA-DU-6392-01 19 58132515 58132515 C T ZNF134 Missense_Mutation p.P343L 0.39 deleterious(0.01) possibly_damaging(0.816) TCGA-DU-6392-01 19 58152302 58152302 C A ZNF211 Missense_Mutation p.L215I 0.08 deleterious(0.02) possibly_damaging(0.671) TCGA-DU-6392-01 19 58153654 58153654 A G ZNF211 3'UTR 0.35 TCGA-DU-6392-01 19 58198994 58198994 G A ZNF551 Missense_Mutation p.E451K 0.39 deleterious(0.05) benign(0.03) TCGA-DU-6392-01 19 58212918 58212918 C T ZNF154 3'UTR 0.44 TCGA-DU-6392-01 19 58213677 58213677 C A ZNF154 Missense_Mutation p.V214L 0.23 tolerated(0.23) benign(0.166) TCGA-DU-6392-01 19 58232137 58232137 G A ZNF671 Silent p.H439H 0.34 TCGA-DU-6392-01 19 58232809 58232809 A G ZNF671 Silent p.N215N 0.34 TCGA-DU-6392-01 19 58262160 58262160 T C AC003006.7 Missense_Mutation p.V14A 0.12 deleterious(0.01) possibly_damaging(0.54) TCGA-DU-6392-01 19 58264658 58264658 G T AC003006.7 Splice_Site p.X54_splice 0.08 TCGA-DU-6392-01 19 5832132 5832132 G A FUT6 Silent p.D149D 0.39 TCGA-DU-6392-01 19 5832296 5832296 C T FUT6 Missense_Mutation p.D95N 0.39 tolerated(1) benign(0.002) TCGA-DU-6392-01 19 58384279 58384279 G A ZNF814 Missense_Mutation p.P827S 0.28 deleterious(0.02) benign(0.008) TCGA-DU-6392-01 19 58420585 58420585 C T ZNF417 Missense_Mutation p.C354Y 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 58420783 58420783 C T ZNF417 Missense_Mutation p.R288Q 0.31 deleterious(0.01) possibly_damaging(0.629) TCGA-DU-6392-01 19 58427855 58427855 G A ZNF417 5'UTR 0.36 TCGA-DU-6392-01 19 58438335 58438335 T G ZNF418 Missense_Mutation p.K405T 0.36 deleterious(0) probably_damaging(0.925) TCGA-DU-6392-01 19 58490723 58490723 G T ZNF606 Missense_Mutation p.A442D 0.28 tolerated(0.18) possibly_damaging(0.886) TCGA-DU-6392-01 19 58549309 58549309 A G ZSCAN1 Silent p.E35E 0.19 TCGA-DU-6392-01 19 58549375 58549375 C T ZSCAN1 Silent p.G57G 0.35 TCGA-DU-6392-01 19 58571461 58571461 G A ZNF135 Intron 0.43 TCGA-DU-6392-01 19 58596375 58596375 C T ZSCAN18 Missense_Mutation p.E460K 0.33 tolerated(0.23) benign(0.041) TCGA-DU-6392-01 19 58640145 58640145 C A ZNF329 Missense_Mutation p.K242N 0.42 deleterious(0.04) probably_damaging(0.995) TCGA-DU-6392-01 19 58640739 58640739 C T ZNF329 Silent p.E44E 0.05 TCGA-DU-6392-01 19 5867076 5867076 G A FUT5 Missense_Mutation p.R221C 0.35 deleterious(0) possibly_damaging(0.761) TCGA-DU-6392-01 19 58724255 58724255 A G ZNF274 Missense_Mutation p.R569G 0.11 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 19 58773033 58773033 C A ZNF544 Missense_Mutation p.S354Y 0.14 tolerated(1) benign(0) TCGA-DU-6392-01 19 58773135 58773135 C A ZNF544 Missense_Mutation p.S388Y 0.23 deleterious(0.03) possibly_damaging(0.681) TCGA-DU-6392-01 19 58846361 58846361 G A ZSCAN22 Missense_Mutation p.E65K 0.38 deleterious(0.03) benign(0.013) TCGA-DU-6392-01 19 58850499 58850499 G T ZSCAN22 Missense_Mutation p.R428I 0.40 deleterious(0) possibly_damaging(0.852) TCGA-DU-6392-01 19 58862761 58862761 G A A1BG Silent p.S302S 0.44 TCGA-DU-6392-01 19 58868478 58868478 G A ZNF497 Missense_Mutation p.S175L 0.50 deleterious(0.01) benign(0.429) TCGA-DU-6392-01 19 58868797 58868797 C A ZNF497 Missense_Mutation p.G69C 0.30 tolerated(0.11) benign(0.062) TCGA-DU-6392-01 19 58945037 58945037 C A ZNF132 Missense_Mutation p.V592F 0.21 deleterious(0) probably_damaging(0.948) TCGA-DU-6392-01 19 58965153 58965153 G A ZNF324B Missense_Mutation p.V29M 0.34 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 19 58967882 58967882 G A ZNF324B Missense_Mutation p.G524E 0.37 tolerated_low_confidence(0.54) benign(0.005) TCGA-DU-6392-01 19 58967899 58967899 C T ZNF324B Missense_Mutation p.R530C 0.46 tolerated(0.06) benign(0.183) TCGA-DU-6392-01 19 58982620 58982620 A G ZNF324 Missense_Mutation p.E254G 0.12 deleterious(0) probably_damaging(0.925) TCGA-DU-6392-01 19 58983118 58983118 C T ZNF324 Missense_Mutation p.T420I 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 19 58983150 58983150 G A ZNF324 Missense_Mutation p.G431S 0.20 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 59009889 59009889 C A SLC27A5 Missense_Mutation p.R689M 0.27 deleterious(0) possibly_damaging(0.838) TCGA-DU-6392-01 19 59009910 59009910 G T SLC27A5 Missense_Mutation p.A682D 0.37 tolerated(0.06) probably_damaging(0.935) TCGA-DU-6392-01 19 59022198 59022198 G A SLC27A5 Missense_Mutation p.A263V 0.25 deleterious(0.01) possibly_damaging(0.639) TCGA-DU-6392-01 19 59028463 59028463 G T ZBTB45 Missense_Mutation p.P193H 0.34 tolerated(0.1) benign(0.319) TCGA-DU-6392-01 19 59028593 59028593 G A ZBTB45 Missense_Mutation p.R150C 0.38 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 19 59057241 59057241 G A TRIM28 Silent p.K188K 0.23 TCGA-DU-6392-01 19 59061781 59061781 G A TRIM28 Missense_Mutation p.R790H 0.34 deleterious(0.03) possibly_damaging(0.507) TCGA-DU-6392-01 19 5923913 5923914 - T RANBP3 Frame_Shift_Ins p.L337Ifs*20 0.24 TCGA-DU-6392-01 19 5994951 5994951 G A RFX2 Silent p.G689G 0.63 TCGA-DU-6392-01 19 6004263 6004263 G A RFX2 Silent p.G483G 0.45 TCGA-DU-6392-01 19 605215 605215 G A HCN2 Missense_Mutation p.G404D 0.31 tolerated(0.29) benign(0.179) TCGA-DU-6392-01 19 613983 613983 G A HCN2 Missense_Mutation p.E653K 0.41 deleterious(0) possibly_damaging(0.497) TCGA-DU-6392-01 19 6183213 6183213 G A ACSBG2 Missense_Mutation p.E418K 0.27 deleterious(0.01) possibly_damaging(0.881) TCGA-DU-6392-01 19 6222532 6222532 C T MLLT1 Missense_Mutation p.R237Q 0.16 tolerated(0.18) possibly_damaging(0.546) TCGA-DU-6392-01 19 6309831 6309831 C T ACER1 Missense_Mutation p.R122H 0.35 tolerated(0.53) benign(0.29) TCGA-DU-6392-01 19 6312450 6312450 C T ACER1 Missense_Mutation p.A52T 0.38 tolerated(0.06) benign(0.151) TCGA-DU-6392-01 19 6312496 6312496 G T ACER1 Silent p.P36P 0.11 TCGA-DU-6392-01 19 6389587 6389587 G T GTF2F1 Nonsense_Mutation p.S65* 0.08 TCGA-DU-6392-01 19 6420462 6420462 T C KHSRP Missense_Mutation p.Y149C 0.32 tolerated(0.09) benign(0.011) TCGA-DU-6392-01 19 6427135 6427135 G A SLC25A41 Missense_Mutation p.R307C 0.30 deleterious(0) benign(0.126) TCGA-DU-6392-01 19 6465560 6465560 G T CRB3 Missense_Mutation p.Q29H 0.10 tolerated(0.14) benign(0.006) TCGA-DU-6392-01 19 6466504 6466504 G A CRB3 Missense_Mutation p.V62M 0.13 deleterious(0) probably_damaging(0.938) TCGA-DU-6392-01 19 6467591 6467591 G A DENND1C Missense_Mutation p.P777L 0.45 deleterious_low_confidence(0.03) benign(0.221) TCGA-DU-6392-01 19 6467603 6467603 G A DENND1C Missense_Mutation p.S773F 0.42 tolerated_low_confidence(0.74) benign(0.276) TCGA-DU-6392-01 19 648907 648907 G A RNF126 Silent p.T215T 0.38 TCGA-DU-6392-01 19 6495605 6495605 G A TUBB4A Missense_Mutation p.A302V 0.35 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DU-6392-01 19 650259 650259 C T RNF126 Missense_Mutation p.A161T 0.44 tolerated(0.64) benign(0.02) TCGA-DU-6392-01 19 6686756 6686756 C T C3 Splice_Site p.X1216_splice 0.36 TCGA-DU-6392-01 19 6697416 6697416 A T C3 Missense_Mutation p.V912D 0.17 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 19 6714050 6714050 G T C3 Missense_Mutation p.F242L 0.28 deleterious(0) probably_damaging(0.945) TCGA-DU-6392-01 19 6718263 6718263 G A C3 Missense_Mutation p.S143F 0.19 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 19 6733194 6733194 A G GPR108 Missense_Mutation p.I281T 0.52 tolerated(0.11) benign(0.038) TCGA-DU-6392-01 19 6754118 6754118 C T SH2D3A Silent p.A443A 0.31 TCGA-DU-6392-01 19 6760693 6760693 G A SH2D3A Silent p.S125S 0.44 TCGA-DU-6392-01 19 6829843 6829843 G A VAV1 Missense_Mutation p.G438R 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 6829876 6829876 C A VAV1 Missense_Mutation p.L449M 0.12 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 6904078 6904078 C A EMR1 Silent p.T278T 0.30 TCGA-DU-6392-01 19 6921808 6921808 A G EMR1 Missense_Mutation p.I569V 0.09 tolerated(1) benign(0.009) TCGA-DU-6392-01 19 6988822 6988822 C A EMR4P RNA 0.45 TCGA-DU-6392-01 19 7170584 7170584 C T INSR Missense_Mutation p.D483N 0.10 deleterious(0.01) possibly_damaging(0.908) TCGA-DU-6392-01 19 7267410 7267410 C T INSR Missense_Mutation p.V200I 0.46 tolerated(0.09) benign(0.067) TCGA-DU-6392-01 19 7267515 7267515 C A INSR Missense_Mutation p.D165Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 19 746643 746643 C T PALM Silent p.I331I 0.44 TCGA-DU-6392-01 19 7509119 7509119 C T ARHGEF18 Missense_Mutation p.R276W 0.43 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 19 7550889 7550889 G A PEX11G Silent p.C28C 0.43 TCGA-DU-6392-01 19 758474 758474 C T MISP Missense_Mutation p.R510W 0.29 deleterious(0) probably_damaging(0.956) TCGA-DU-6392-01 19 7595356 7595356 C T MCOLN1 Missense_Mutation p.A515V 0.43 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 19 7622065 7622065 C T PNPLA6 Missense_Mutation p.R1108W 0.31 deleterious(0) possibly_damaging(0.751) TCGA-DU-6392-01 19 7677157 7677157 C T CAMSAP3 Missense_Mutation p.P620L 0.56 deleterious(0.03) benign(0.3) TCGA-DU-6392-01 19 7682811 7682811 G A CAMSAP3 Silent p.S1233S 0.43 TCGA-DU-6392-01 19 7684859 7684859 C T XAB2 Missense_Mutation p.R790H 0.38 tolerated(0.1) benign(0.416) TCGA-DU-6392-01 19 7684867 7684867 C T XAB2 Silent p.Q787Q 0.13 TCGA-DU-6392-01 19 7685535 7685535 C T XAB2 Silent p.A664A 0.27 TCGA-DU-6392-01 19 7735145 7735145 C T RETN Silent p.G79G 0.50 TCGA-DU-6392-01 19 7747355 7747355 C T CTD-3214H19.16 Nonsense_Mutation p.R132* 0.62 TCGA-DU-6392-01 19 7747556 7747556 C T TRAPPC5 Silent p.C139C 0.42 TCGA-DU-6392-01 19 7794735 7794735 A G CLEC4G Missense_Mutation p.W239R 0.28 deleterious(0.02) possibly_damaging(0.593) TCGA-DU-6392-01 19 7809028 7809028 C T CD209 Silent p.T326T 0.31 TCGA-DU-6392-01 19 7965224 7965224 C T LRRC8E Missense_Mutation p.A606V 0.47 deleterious(0) probably_damaging(0.945) TCGA-DU-6392-01 19 8032574 8032574 C T ELAVL1 Silent p.E177E 0.38 TCGA-DU-6392-01 19 8139980 8139980 C T FBN3 Silent p.Q2559Q 0.36 TCGA-DU-6392-01 19 8151120 8151120 C A FBN3 Nonsense_Mutation p.G2282* 0.39 TCGA-DU-6392-01 19 8152081 8152081 C T FBN3 Missense_Mutation p.A2212T 0.37 tolerated(0.13) possibly_damaging(0.461) TCGA-DU-6392-01 19 8174224 8174224 C T FBN3 Missense_Mutation p.S1502N 0.33 tolerated(0.17) benign(0.001) TCGA-DU-6392-01 19 8190852 8190852 G A FBN3 Silent p.C885C 0.34 TCGA-DU-6392-01 19 8191363 8191363 C T FBN3 Missense_Mutation p.R848H 0.29 tolerated(0.12) benign(0.082) TCGA-DU-6392-01 19 8191660 8191660 C T FBN3 Missense_Mutation p.G785S 0.35 deleterious(0.03) possibly_damaging(0.855) TCGA-DU-6392-01 19 8201322 8201322 C T FBN3 Missense_Mutation p.R432H 0.40 deleterious(0.02) benign(0.117) TCGA-DU-6392-01 19 8211083 8211083 C A FBN3 Missense_Mutation p.G93C 0.50 deleterious(0) possibly_damaging(0.487) TCGA-DU-6392-01 19 8320711 8320711 G A CERS4 Missense_Mutation p.R139K 0.30 tolerated(0.06) benign(0.437) TCGA-DU-6392-01 19 8326599 8326599 C T CERS4 Silent p.S292S 0.26 TCGA-DU-6392-01 19 8430878 8430878 T C ANGPTL4 Missense_Mutation p.F120S 0.46 tolerated(0.08) benign(0.036) TCGA-DU-6392-01 19 8486897 8486897 C T MARCH2 Missense_Mutation p.P58L 0.31 tolerated(0.24) benign(0.04) TCGA-DU-6392-01 19 8528381 8528381 G A HNRNPM Missense_Mutation p.G113R 0.16 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 19 8563370 8563370 C T PRAM1 Missense_Mutation p.R441Q 0.60 tolerated(0.08) benign(0.232) TCGA-DU-6392-01 19 8601203 8601203 G A MYO1F Missense_Mutation p.A659V 0.36 deleterious(0.02) benign(0.23) TCGA-DU-6392-01 19 8606809 8606809 G T MYO1F Missense_Mutation p.L531M 0.12 deleterious(0.04) possibly_damaging(0.644) TCGA-DU-6392-01 19 860969 860969 G T CFD Missense_Mutation p.Q107H 0.30 tolerated(0.23) benign(0) TCGA-DU-6392-01 19 8619587 8619587 T C MYO1F Missense_Mutation p.K61R 0.07 tolerated(0.26) probably_damaging(0.951) TCGA-DU-6392-01 19 8651767 8651767 G A ADAMTS10 Silent p.V724V 0.42 TCGA-DU-6392-01 19 8651776 8651776 G A ADAMTS10 Silent p.Y721Y 0.43 TCGA-DU-6392-01 19 8666003 8666003 A G ADAMTS10 Missense_Mutation p.W207R 0.29 tolerated(0.11) benign(0.004) TCGA-DU-6392-01 19 8922631 8922631 G T ZNF558 Missense_Mutation p.P179T 0.49 deleterious(0.03) probably_damaging(0.996) TCGA-DU-6392-01 19 8933396 8933396 G T ZNF558 5'UTR 0.50 TCGA-DU-6392-01 19 9016986 9016986 C A MUC16 Missense_Mutation p.S12670I 0.16 benign(0.262) TCGA-DU-6392-01 19 9021062 9021062 G A MUC16 Nonsense_Mutation p.Q12421* 0.08 TCGA-DU-6392-01 19 9024862 9024862 G A MUC16 Missense_Mutation p.P12334S 0.47 benign(0.095) TCGA-DU-6392-01 19 9045923 9045923 G T MUC16 Missense_Mutation p.S11903Y 0.27 possibly_damaging(0.702) TCGA-DU-6392-01 19 9045932 9045932 G T MUC16 Missense_Mutation p.S11900Y 0.10 possibly_damaging(0.593) TCGA-DU-6392-01 19 9049446 9049446 C A MUC16 Missense_Mutation p.V10729F 0.32 benign(0.016) TCGA-DU-6392-01 19 9058224 9058224 G T MUC16 Missense_Mutation p.P9741H 0.11 unknown(0) TCGA-DU-6392-01 19 9066603 9066603 G A MUC16 Missense_Mutation p.S6948F 0.35 unknown(0) TCGA-DU-6392-01 19 9066667 9066667 T C MUC16 Missense_Mutation p.T6927A 0.43 unknown(0) TCGA-DU-6392-01 19 9067202 9067202 C A MUC16 Missense_Mutation p.Q6748H 0.08 unknown(0) TCGA-DU-6392-01 19 9072095 9072095 A C MUC16 Missense_Mutation p.I5117M 0.11 unknown(0) TCGA-DU-6392-01 19 9074008 9074008 C T MUC16 Missense_Mutation p.V4480I 0.11 unknown(0) TCGA-DU-6392-01 19 9086021 9086021 T C MUC16 Missense_Mutation p.I1932V 0.09 unknown(0) TCGA-DU-6392-01 19 9086385 9086385 T C MUC16 Silent p.K1810K 0.41 TCGA-DU-6392-01 19 9088125 9088125 C A MUC16 Missense_Mutation p.E1230D 0.05 unknown(0) TCGA-DU-6392-01 19 9089734 9089734 G A MUC16 Missense_Mutation p.T694I 0.33 unknown(0) TCGA-DU-6392-01 19 9204427 9204427 C T OR1M1 Silent p.C169C 0.45 TCGA-DU-6392-01 19 9204457 9204457 C T OR1M1 Silent p.C179C 0.37 TCGA-DU-6392-01 19 9204585 9204585 T C OR1M1 Missense_Mutation p.L222P 0.15 deleterious(0) benign(0.378) TCGA-DU-6392-01 19 9270912 9270912 C T ZNF317 Silent p.R197R 0.30 TCGA-DU-6392-01 19 9271665 9271665 C T ZNF317 Silent p.C448C 0.41 TCGA-DU-6392-01 19 9272239 9272239 C T ZNF317 3'UTR 0.38 TCGA-DU-6392-01 19 9297234 9297234 C T OR7D2 Silent p.H259H 0.42 TCGA-DU-6392-01 19 9361936 9361936 C A OR7E24 Missense_Mutation p.L73I 0.20 deleterious(0) probably_damaging(0.977) TCGA-DU-6392-01 19 9362594 9362594 C A OR7E24 Missense_Mutation p.A292D 0.55 deleterious(0) probably_damaging(0.958) TCGA-DU-6392-01 19 9453292 9453292 G A ZNF559 Missense_Mutation p.A389T 0.37 tolerated(0.19) benign(0.054) TCGA-DU-6392-01 19 9492206 9492206 A G ZNF177 Missense_Mutation p.Q400R 0.07 deleterious(0.01) benign(0.311) TCGA-DU-6392-01 19 9523993 9523993 T C ZNF266 Silent p.R536R 0.38 TCGA-DU-6392-01 19 9524262 9524262 G A ZNF266 Missense_Mutation p.H447Y 0.29 tolerated(0.84) benign(0.115) TCGA-DU-6392-01 19 9524768 9524768 G A ZNF266 Missense_Mutation p.T278I 0.40 tolerated(0.11) benign(0.065) TCGA-DU-6392-01 19 9525241 9525241 C A ZNF266 Missense_Mutation p.K120N 0.11 tolerated(0.08) benign(0.001) TCGA-DU-6392-01 19 9525366 9525366 C A ZNF266 Missense_Mutation p.D79Y 0.38 deleterious(0.02) possibly_damaging(0.608) TCGA-DU-6392-01 19 9578110 9578110 C T ZNF560 Missense_Mutation p.A505T 0.39 tolerated(0.58) probably_damaging(0.945) TCGA-DU-6392-01 19 9578926 9578926 T C ZNF560 Missense_Mutation p.M233V 0.08 tolerated(0.83) benign(0) TCGA-DU-6392-01 19 9639588 9639588 C T ZNF426 Missense_Mutation p.R378H 0.43 tolerated(0.54) possibly_damaging(0.608) TCGA-DU-6392-01 19 9639635 9639635 C T ZNF426 Silent p.K362K 0.35 TCGA-DU-6392-01 19 9763660 9763660 T C ZNF562 Missense_Mutation p.S416G 0.31 tolerated(0.12) benign(0.101) TCGA-DU-6392-01 19 9764264 9764264 C A ZNF562 Missense_Mutation p.K214N 0.25 tolerated(0.27) possibly_damaging(0.601) TCGA-DU-6392-01 19 9801183 9801183 G T ZNF812 Missense_Mutation p.H332Q 0.15 deleterious(0) benign(0.002) TCGA-DU-6392-01 19 9939539 9939539 C A UBL5 Missense_Mutation p.S56Y 0.29 deleterious(0.04) benign(0.238) TCGA-DU-6392-01 19 9964942 9964942 G T OLFM2 Missense_Mutation p.L429I 0.09 deleterious(0.03) probably_damaging(0.992) TCGA-DU-6392-01 1 100155449 100155449 T C PALMD Intron 0.29 TCGA-DU-6392-01 1 100174574 100174574 C T FRRS1 Silent p.K587K 0.54 TCGA-DU-6392-01 1 100525513 100525513 C T HIAT1 Missense_Mutation p.T108M 0.08 deleterious(0) probably_damaging(0.971) TCGA-DU-6392-01 1 100598715 100598715 C T TRMT13 5'Flank 0.31 TCGA-DU-6392-01 1 100609634 100609634 C A TRMT13 Missense_Mutation p.P251H 0.24 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 1 100609688 100609688 G T TRMT13 Missense_Mutation p.G269V 0.27 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 100614354 100614354 C A TRMT13 Nonsense_Mutation p.S475* 0.18 TCGA-DU-6392-01 1 100620647 100620647 G A LRRC39 Nonsense_Mutation p.Q258* 0.06 TCGA-DU-6392-01 1 100633981 100633981 C T LRRC39 Missense_Mutation p.R31Q 0.09 tolerated(0.08) benign(0.009) TCGA-DU-6392-01 1 100963754 100963754 C T CDC14A Missense_Mutation p.T471I 0.32 tolerated(0.12) benign(0.003) TCGA-DU-6392-01 1 101005515 101005515 C T GPR88 Silent p.L331L 0.39 TCGA-DU-6392-01 1 101186146 101186146 G A VCAM1 Missense_Mutation p.R60K 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-DU-6392-01 1 102270305 102270305 C A OLFM3 Missense_Mutation p.S289I 0.28 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 102302451 102302451 C T OLFM3 Missense_Mutation p.R67H 0.29 deleterious(0.01) possibly_damaging(0.595) TCGA-DU-6392-01 1 103412484 103412484 C T COL11A1 Missense_Mutation p.G1066D 0.26 unknown(0) TCGA-DU-6392-01 1 103431043 103431043 C A COL11A1 Missense_Mutation p.Q972H 0.05 unknown(0) TCGA-DU-6392-01 1 103548440 103548440 C A COL11A1 Missense_Mutation p.K65N 0.19 probably_damaging(0.914) TCGA-DU-6392-01 1 10364195 10364195 G T KIF1B Intron 0.07 TCGA-DU-6392-01 1 104115752 104115752 G T AMY2B Missense_Mutation p.S128I 0.22 deleterious(0.01) probably_damaging(0.92) TCGA-DU-6392-01 1 104162349 104162349 G A AMY2A Silent p.L229L 0.11 TCGA-DU-6392-01 1 10715763 10715763 G A CASZ1 Silent p.S536S 0.43 TCGA-DU-6392-01 1 10720038 10720038 T C CASZ1 Missense_Mutation p.E354G 0.10 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DU-6392-01 1 107599821 107599821 C A PRMT6 Missense_Mutation p.L162M 0.25 tolerated(0.09) probably_damaging(0.976) TCGA-DU-6392-01 1 107691197 107691197 G T NTNG1 5'UTR 0.25 TCGA-DU-6392-01 1 108116774 108116774 G T VAV3 Missense_Mutation p.F799L 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 108319905 108319905 C A VAV3 Nonsense_Mutation p.E132* 0.29 TCGA-DU-6392-01 1 109191153 109191153 G A HENMT1 3'UTR 0.31 TCGA-DU-6392-01 1 109193759 109193759 C A HENMT1 Missense_Mutation p.M157I 0.59 tolerated(0.28) benign(0.017) TCGA-DU-6392-01 1 109351454 109351454 G A STXBP3 Missense_Mutation p.M578I 0.26 tolerated(0.12) benign(0.008) TCGA-DU-6392-01 1 109359770 109359770 C A AKNAD1 Missense_Mutation p.S760I 0.09 tolerated(0.11) possibly_damaging(0.578) TCGA-DU-6392-01 1 109366029 109366029 C T AKNAD1 Silent p.Q710Q 0.24 TCGA-DU-6392-01 1 109392171 109392171 C T AKNAD1 Missense_Mutation p.E341K 0.54 deleterious(0.01) probably_damaging(0.975) TCGA-DU-6392-01 1 109394328 109394328 T C AKNAD1 Missense_Mutation p.K320R 0.06 tolerated(0.11) benign(0.043) TCGA-DU-6392-01 1 109394579 109394579 C A AKNAD1 Missense_Mutation p.Q236H 0.07 tolerated(0.06) probably_damaging(0.944) TCGA-DU-6392-01 1 109445823 109445823 T A GPSM2 Missense_Mutation p.H343Q 0.59 tolerated(0.2) benign(0.18) TCGA-DU-6392-01 1 109538268 109538268 G T WDR47 Missense_Mutation p.T550N 0.05 tolerated(0.07) possibly_damaging(0.765) TCGA-DU-6392-01 1 109554001 109554001 T A WDR47 Missense_Mutation p.S230C 0.05 tolerated(0.08) benign(0.065) TCGA-DU-6392-01 1 109707210 109707210 A G KIAA1324 Missense_Mutation p.I122V 0.21 tolerated(0.86) benign(0.016) TCGA-DU-6392-01 1 109714636 109714636 G A KIAA1324 Splice_Site p.X205_splice 0.27 TCGA-DU-6392-01 1 109740233 109740233 C A KIAA1324 Silent p.A753A 0.22 TCGA-DU-6392-01 1 109778673 109778673 A T SARS Silent p.A348A 0.35 TCGA-DU-6392-01 1 109793483 109793483 C T CELSR2 Missense_Mutation p.A261V 0.59 deleterious(0.03) possibly_damaging(0.881) TCGA-DU-6392-01 1 109794054 109794054 C T CELSR2 Silent p.A451A 0.34 TCGA-DU-6392-01 1 109794125 109794125 G A CELSR2 Missense_Mutation p.R475Q 0.10 deleterious(0) possibly_damaging(0.906) TCGA-DU-6392-01 1 109795063 109795063 C T CELSR2 Missense_Mutation p.R788W 0.38 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 1 109795318 109795318 G A CELSR2 Missense_Mutation p.V873M 0.54 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 1 109795676 109795676 A G CELSR2 Missense_Mutation p.Y992C 0.24 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 109795908 109795908 A G CELSR2 Silent p.E1069E 0.23 TCGA-DU-6392-01 1 109803708 109803708 G T CELSR2 Missense_Mutation p.G1335C 0.19 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 109804139 109804139 G A CELSR2 Missense_Mutation p.A1396T 0.27 deleterious(0.03) probably_damaging(0.951) TCGA-DU-6392-01 1 109812366 109812366 G A CELSR2 Missense_Mutation p.R2344H 0.55 tolerated(0.05) probably_damaging(0.997) TCGA-DU-6392-01 1 109822660 109822660 T G PSRC1 3'UTR 0.06 TCGA-DU-6392-01 1 109823528 109823528 G A PSRC1 Nonsense_Mutation p.R259* 0.64 TCGA-DU-6392-01 1 109824315 109824315 G A PSRC1 Missense_Mutation p.R149W 0.20 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 1 109870142 109870142 C T SORT1 Missense_Mutation p.V485I 0.25 tolerated(0.21) benign(0.072) TCGA-DU-6392-01 1 110019486 110019486 G A SYPL2 Missense_Mutation p.A115T 0.18 deleterious(0) possibly_damaging(0.774) TCGA-DU-6392-01 1 110032730 110032730 C T ATXN7L2 Missense_Mutation p.R406W 0.27 tolerated(0.16) probably_damaging(0.976) TCGA-DU-6392-01 1 110050173 110050173 G A AMIGO1 Silent p.N454N 0.27 TCGA-DU-6392-01 1 110050380 110050380 G A AMIGO1 Silent p.V385V 0.59 TCGA-DU-6392-01 1 110086628 110086628 G T GPR61 Missense_Mutation p.W328C 0.28 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 110086836 110086836 C T GPR61 Nonsense_Mutation p.R398* 0.27 TCGA-DU-6392-01 1 110169414 110169414 T C AMPD2 Missense_Mutation p.Y254H 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 1 11018798 11018798 G T C1orf127 Silent p.P176P 0.25 TCGA-DU-6392-01 1 110293362 110293362 G A EPS8L3 Missense_Mutation p.P565S 0.55 tolerated(0.07) possibly_damaging(0.804) TCGA-DU-6392-01 1 110655424 110655424 C A UBL4B Missense_Mutation p.L90M 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 1 110717534 110717534 G A SLC6A17 Nonsense_Mutation p.W235* 0.40 TCGA-DU-6392-01 1 110883957 110883957 C A RBM15 Missense_Mutation p.L644M 0.28 tolerated(0.26) possibly_damaging(0.735) TCGA-DU-6392-01 1 110884569 110884569 C T RBM15 Missense_Mutation p.R848C 0.10 deleterious(0.02) possibly_damaging(0.478) TCGA-DU-6392-01 1 110919640 110919640 G T SLC16A4 Missense_Mutation p.L392I 0.30 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 110921953 110921953 G A SLC16A4 Silent p.I184I 0.28 TCGA-DU-6392-01 1 110923703 110923704 - T SLC16A4 Frame_Shift_Ins p.R143Tfs*31 0.33 TCGA-DU-6392-01 1 110950531 110950531 T G LAMTOR5 5'UTR 0.60 TCGA-DU-6392-01 1 111060704 111060704 C T KCNA10 Missense_Mutation p.E236K 0.09 deleterious(0) possibly_damaging(0.785) TCGA-DU-6392-01 1 11114914 11114914 G A SRM 3'UTR 0.34 TCGA-DU-6392-01 1 11119373 11119373 T A SRM Missense_Mutation p.D66V 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 111494608 111494608 A C LRIF1 Missense_Mutation p.F300V 0.49 tolerated(0.48) benign(0) TCGA-DU-6392-01 1 111726101 111726101 A G CEPT1 Silent p.K341K 0.21 TCGA-DU-6392-01 1 11182139 11182139 A T MTOR Missense_Mutation p.L2236H 0.52 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 111825252 111825252 A C CHIAP2 RNA 0.12 TCGA-DU-6392-01 1 111957148 111957148 T C OVGP1 Missense_Mutation p.T659A 0.30 tolerated_low_confidence(0.21) benign(0.003) TCGA-DU-6392-01 1 111989719 111989719 C T WDR77 Missense_Mutation p.R164Q 0.30 tolerated(0.06) possibly_damaging(0.836) TCGA-DU-6392-01 1 112019956 112019957 - A C1orf162 Frame_Shift_Ins p.H39Tfs*99 0.33 TCGA-DU-6392-01 1 112020051 112020051 G A C1orf162 Splice_Site p.X68_splice 0.42 TCGA-DU-6392-01 1 112045664 112045664 C T ADORA3 Missense_Mutation p.A105T 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.825) TCGA-DU-6392-01 1 112045919 112045919 T G ADORA3 Missense_Mutation p.I20L 0.20 tolerated_low_confidence(0.37) benign(0.019) TCGA-DU-6392-01 1 11205086 11205086 C A MTOR Missense_Mutation p.R1568M 0.32 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 112305025 112305025 G T DDX20 Intron 0.11 TCGA-DU-6392-01 1 112329661 112329661 C T KCND3 Missense_Mutation p.V392I 0.25 tolerated(0.08) benign(0.312) TCGA-DU-6392-01 1 11249979 11249979 C T ANGPTL7 Nonsense_Mutation p.Q115* 0.50 TCGA-DU-6392-01 1 112998752 112998752 G A CTTNBP2NL Missense_Mutation p.R213Q 0.18 tolerated(0.06) benign(0.295) TCGA-DU-6392-01 1 112999761 112999761 A G CTTNBP2NL Silent p.S549S 0.48 TCGA-DU-6392-01 1 113010070 113010070 T C WNT2B 5'UTR 0.38 TCGA-DU-6392-01 1 113063007 113063007 G A WNT2B Missense_Mutation p.R351H 0.18 tolerated(0.06) probably_damaging(0.954) TCGA-DU-6392-01 1 113244177 113244177 G A RHOC Silent p.G189G 0.41 TCGA-DU-6392-01 1 113266618 113266618 G A FAM19A3 Missense_Mutation p.R106H 0.36 tolerated_low_confidence(0.13) benign(0.024) TCGA-DU-6392-01 1 113266716 113266716 C T FAM19A3 Missense_Mutation p.R139W 0.42 deleterious(0) benign(0.341) TCGA-DU-6392-01 1 11333834 11333834 G A UBIAD1 Silent p.R82R 0.10 TCGA-DU-6392-01 1 113460590 113460590 G T SLC16A1 Silent p.A146A 0.46 TCGA-DU-6392-01 1 113666508 113666508 C T LRIG2 Missense_Mutation p.R995W 0.58 deleterious(0) benign(0.386) TCGA-DU-6392-01 1 114128135 114128135 G A MAGI3 Missense_Mutation p.S227N 0.33 tolerated(0.21) probably_damaging(0.94) TCGA-DU-6392-01 1 114133192 114133192 A G MAGI3 Missense_Mutation p.N284D 0.16 tolerated(0.32) benign(0.438) TCGA-DU-6392-01 1 114196468 114196468 C T MAGI3 Silent p.D819D 0.09 TCGA-DU-6392-01 1 114226160 114226160 G A MAGI3 Missense_Mutation p.A1324T 0.37 tolerated_low_confidence(0.44) benign(0.005) TCGA-DU-6392-01 1 114246748 114246748 C A PHTF1 Silent p.S615S 0.46 TCGA-DU-6392-01 1 114248605 114248605 A G PHTF1 Silent p.I526I 0.10 TCGA-DU-6392-01 1 114308942 114308942 G A RSBN1 Missense_Mutation p.S690L 0.35 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 1 114448282 114448282 G A DCLRE1B Missense_Mutation p.R25H 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 114483046 114483046 C T HIPK1 Missense_Mutation p.S14L 0.42 deleterious(0.01) unknown(0) TCGA-DU-6392-01 1 114512727 114512727 G T HIPK1 Missense_Mutation p.R974I 0.09 tolerated(0.17) benign(0.004) TCGA-DU-6392-01 1 114640391 114640391 T C SYT6 Silent p.A406A 0.49 TCGA-DU-6392-01 1 114680281 114680281 G A SYT6 Missense_Mutation p.P218S 0.27 tolerated(0.11) benign(0.383) TCGA-DU-6392-01 1 114680430 114680430 G A SYT6 Missense_Mutation p.A168V 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 114680571 114680571 C T SYT6 Missense_Mutation p.R121H 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 1 1148385 1148385 G A TNFRSF4 Silent p.Y119Y 0.32 TCGA-DU-6392-01 1 115130424 115130424 C T DENND2C Missense_Mutation p.V861I 0.28 tolerated(0.33) possibly_damaging(0.822) TCGA-DU-6392-01 1 115151396 115151396 G T DENND2C Missense_Mutation p.L490M 0.47 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 1 115153703 115153703 G A DENND2C Silent p.L454L 0.28 TCGA-DU-6392-01 1 115166215 115166215 G A DENND2C Nonsense_Mutation p.Q286* 0.08 TCGA-DU-6392-01 1 115222982 115222982 G A AMPD1 Missense_Mutation p.A255V 0.10 tolerated(0.12) benign(0.003) TCGA-DU-6392-01 1 115267900 115267900 G A CSDE1 Silent p.S611S 0.29 TCGA-DU-6392-01 1 115267955 115267955 C T CSDE1 Splice_Site p.X593_splice 0.07 TCGA-DU-6392-01 1 115273208 115273208 C T CSDE1 Missense_Mutation p.R417H 0.13 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 1 115276643 115276643 G A CSDE1 Silent p.G272G 0.45 TCGA-DU-6392-01 1 115428851 115428851 G A SYCP1 Missense_Mutation p.A371T 0.31 tolerated(0.26) benign(0.023) TCGA-DU-6392-01 1 11575545 11575545 G A PTCHD2 Missense_Mutation p.V525M 0.35 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 1 116227955 116227955 G A VANGL1 Missense_Mutation p.R374H 0.30 deleterious(0.01) benign(0.025) TCGA-DU-6392-01 1 116269612 116269612 C A CASQ2 Splice_Site p.X246_splice 0.42 TCGA-DU-6392-01 1 116380610 116380610 A T NHLH2 Nonsense_Mutation p.Y128* 0.21 TCGA-DU-6392-01 1 116563484 116563484 C T SLC22A15 Silent p.G192G 0.29 TCGA-DU-6392-01 1 116666974 116666974 C T MAB21L3 Silent p.L159L 0.38 TCGA-DU-6392-01 1 116929920 116929920 C A ATP1A1 Missense_Mutation p.S65Y 0.11 deleterious(0.02) benign(0.121) TCGA-DU-6392-01 1 116929940 116929940 C A ATP1A1 Missense_Mutation p.L72M 0.13 deleterious(0) possibly_damaging(0.657) TCGA-DU-6392-01 1 116931303 116931303 C T ATP1A1 Missense_Mutation p.A182V 0.36 tolerated(0.22) benign(0.031) TCGA-DU-6392-01 1 117156618 117156618 C A IGSF3 Missense_Mutation p.D201Y 0.09 deleterious(0) probably_damaging(0.938) TCGA-DU-6392-01 1 11715984 11715984 G A FBXO44 Missense_Mutation p.R31H 0.13 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 11718910 11718910 C T FBXO44 Silent p.S202S 0.35 TCGA-DU-6392-01 1 11733671 11733671 G T FBXO6 Splice_Site p.X216_splice 0.09 TCGA-DU-6392-01 1 11733805 11733805 A C FBXO6 Missense_Mutation p.K260T 0.43 tolerated(0.24) benign(0.01) TCGA-DU-6392-01 1 117492100 117492100 C T PTGFRN Silent p.C373C 0.44 TCGA-DU-6392-01 1 117492104 117492104 G A PTGFRN Missense_Mutation p.V375M 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-DU-6392-01 1 117509809 117509809 G A PTGFRN Missense_Mutation p.R639H 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 117529477 117529477 T C PTGFRN Missense_Mutation p.I843T 0.07 deleterious(0) benign(0.309) TCGA-DU-6392-01 1 117561089 117561089 G A CD101 Missense_Mutation p.V642I 0.12 deleterious(0.03) possibly_damaging(0.895) TCGA-DU-6392-01 1 117626696 117626696 C T TTF2 Missense_Mutation p.H654Y 0.08 deleterious(0.02) probably_damaging(0.928) TCGA-DU-6392-01 1 117663672 117663672 G A TRIM45 Missense_Mutation p.T51M 0.13 tolerated(0.1) possibly_damaging(0.631) TCGA-DU-6392-01 1 11775175 11775175 G T DRAXIN Splice_Site p.X283_splice 0.10 TCGA-DU-6392-01 1 117945001 117945001 G T MAN1A2 Nonsense_Mutation p.G166* 0.44 TCGA-DU-6392-01 1 118488742 118488742 T C WDR3 Silent p.C454C 0.39 TCGA-DU-6392-01 1 118501575 118501575 A G WDR3 Silent p.P875P 0.40 TCGA-DU-6392-01 1 11850928 11850928 G A MTHFR Missense_Mutation p.R594W 0.38 deleterious(0.05) benign(0.258) TCGA-DU-6392-01 1 118514577 118514577 G T SPAG17 Missense_Mutation p.L2079I 0.47 tolerated(0.72) benign(0.316) TCGA-DU-6392-01 1 11854129 11854129 C A MTHFR Missense_Mutation p.W455C 0.41 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 1 11854429 11854429 G A MTHFR Missense_Mutation p.R445W 0.35 deleterious(0.03) benign(0.002) TCGA-DU-6392-01 1 118558601 118558601 G T SPAG17 Missense_Mutation p.P1425H 0.30 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 11863020 11863020 G A MTHFR Nonsense_Mutation p.R52* 0.27 TCGA-DU-6392-01 1 118634246 118634246 G A SPAG17 Missense_Mutation p.H448Y 0.40 deleterious(0) possibly_damaging(0.869) TCGA-DU-6392-01 1 118634612 118634612 G A SPAG17 Missense_Mutation p.A396V 0.05 tolerated(0.5) benign(0.001) TCGA-DU-6392-01 1 118640381 118640381 G T SPAG17 Missense_Mutation p.P308H 0.09 tolerated(0.57) probably_damaging(0.982) TCGA-DU-6392-01 1 118642422 118642422 G A SPAG17 Silent p.D212D 0.43 TCGA-DU-6392-01 1 11888655 11888655 C T CLCN6 Silent p.N365N 0.07 TCGA-DU-6392-01 1 11898641 11898641 C A CLCN6 Missense_Mutation p.T818N 0.11 deleterious(0.01) possibly_damaging(0.609) TCGA-DU-6392-01 1 1192381 1192381 C T UBE2J2 Silent p.S151S 0.33 TCGA-DU-6392-01 1 119466177 119466177 C T TBX15 Missense_Mutation p.R142H 0.26 tolerated(0.06) benign(0.06) TCGA-DU-6392-01 1 119467338 119467338 G T TBX15 Silent p.T102T 0.09 TCGA-DU-6392-01 1 119618995 119618996 - T WARS2 Frame_Shift_Ins p.S109Kfs*11 0.35 TCGA-DU-6392-01 1 11983089 11983089 C T KIAA2013 Silent p.V497V 0.22 TCGA-DU-6392-01 1 11983416 11983416 G T KIAA2013 Missense_Mutation p.D388E 0.09 tolerated(1) benign(0.002) TCGA-DU-6392-01 1 120056731 120056731 C T HSD3B1 Silent p.S195S 0.40 TCGA-DU-6392-01 1 12017043 12017043 T C PLOD1 Missense_Mutation p.V238A 0.09 tolerated(0.11) benign(0.13) TCGA-DU-6392-01 1 12025566 12025566 C T PLOD1 Silent p.H500H 0.44 TCGA-DU-6392-01 1 120263907 120263907 C A PHGDH Missense_Mutation p.L85M 0.37 deleterious(0.02) probably_damaging(0.914) TCGA-DU-6392-01 1 120301770 120301770 C T HMGCS2 Missense_Mutation p.R274H 0.40 tolerated(0.07) benign(0.152) TCGA-DU-6392-01 1 120306897 120306897 C A HMGCS2 Missense_Mutation p.G153C 0.16 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 120337242 120337242 T C REG4 Nonstop_Mutation p.*159Wext*47 0.47 TCGA-DU-6392-01 1 12034842 12034842 G A PLOD1 Missense_Mutation p.A721T 0.45 deleterious(0.04) possibly_damaging(0.804) TCGA-DU-6392-01 1 120438116 120438116 T - ADAM30 Frame_Shift_Del p.S282Vfs*3 0.16 TCGA-DU-6392-01 1 120438761 120438761 G A ADAM30 Nonsense_Mutation p.Q67* 0.31 TCGA-DU-6392-01 1 120457927 120457927 T C NOTCH2 3'UTR 0.09 TCGA-DU-6392-01 1 120458048 120458048 C T NOTCH2 Missense_Mutation p.A2433T 0.10 tolerated(0.47) probably_damaging(0.998) TCGA-DU-6392-01 1 120464876 120464876 C A NOTCH2 Missense_Mutation p.Q1732H 0.14 deleterious(0) possibly_damaging(0.736) TCGA-DU-6392-01 1 120466300 120466300 G A NOTCH2 Missense_Mutation p.R1607C 0.41 deleterious(0.02) possibly_damaging(0.613) TCGA-DU-6392-01 1 120491630 120491630 C A NOTCH2 Missense_Mutation p.G867C 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 120512161 120512163 AGA - NOTCH2 In_Frame_Del p.F360del 0.13 TCGA-DU-6392-01 1 12056244 12056244 G A MFN2 Missense_Mutation p.A115T 0.45 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 120906237 120906237 C A RP11-439A17.4 5'Flank 0.10 TCGA-DU-6392-01 1 12170199 12170199 C T TNFRSF8 Missense_Mutation p.A205V 0.29 tolerated(0.14) possibly_damaging(0.72) TCGA-DU-6392-01 1 12248851 12248851 A G TNFRSF1B Splice_Site p.X27_splice 0.31 TCGA-DU-6392-01 1 12262066 12262066 G A TNFRSF1B Missense_Mutation p.E315K 0.55 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 1231407 1231407 G A ACAP3 Missense_Mutation p.A497V 0.21 deleterious(0) benign(0.071) TCGA-DU-6392-01 1 1234013 1234013 G T ACAP3 Missense_Mutation p.P266H 0.16 deleterious(0.03) benign(0.289) TCGA-DU-6392-01 1 12343686 12343686 G A VPS13D Missense_Mutation p.A1843T 0.36 benign(0.177) TCGA-DU-6392-01 1 12353762 12353762 G A VPS13D Splice_Site p.X2011_splice 0.26 TCGA-DU-6392-01 1 1235548 1235548 A G ACAP3 Missense_Mutation p.I186T 0.26 deleterious(0.01) benign(0.066) TCGA-DU-6392-01 1 12359362 12359362 T C VPS13D Missense_Mutation p.V2046A 0.42 benign(0.369) TCGA-DU-6392-01 1 12418629 12418629 A G VPS13D Silent p.G3371G 0.39 TCGA-DU-6392-01 1 12638855 12638855 C T DHRS3 Missense_Mutation p.A197T 0.63 deleterious(0) possibly_damaging(0.623) TCGA-DU-6392-01 1 12711226 12711226 C T AADACL4 Missense_Mutation p.P85S 0.36 deleterious(0.05) benign(0.133) TCGA-DU-6392-01 1 12806454 12806454 G A C1orf158 Missense_Mutation p.V26M 0.31 deleterious(0) possibly_damaging(0.893) TCGA-DU-6392-01 1 12837158 12837158 C A PRAMEF12 Missense_Mutation p.L290I 0.39 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 1 12854399 12854399 A G PRAMEF1 Missense_Mutation p.Q208R 0.06 deleterious(0.02) benign(0.049) TCGA-DU-6392-01 1 12856088 12856088 C A PRAMEF1 Silent p.P456P 0.09 TCGA-DU-6392-01 1 12887615 12887615 G A PRAMEF11 Missense_Mutation p.A81V 0.39 tolerated(0.43) benign(0.057) TCGA-DU-6392-01 1 12888529 12888529 G A PRAMEF11 5'UTR 0.25 TCGA-DU-6392-01 1 1289437 1289437 G A MXRA8 Missense_Mutation p.L399F 0.12 tolerated(0.72) benign(0.001) TCGA-DU-6392-01 1 1290239 1290239 G A MXRA8 Missense_Mutation p.R258C 0.55 tolerated(0.2) possibly_damaging(0.88) TCGA-DU-6392-01 1 12907884 12907884 C T HNRNPCL1 Missense_Mutation p.E87K 0.10 deleterious(0.01) benign(0.036) TCGA-DU-6392-01 1 12955581 12955581 C A PRAMEF10 Missense_Mutation p.R33M 0.25 tolerated(0.28) benign(0.137) TCGA-DU-6392-01 1 12980252 12980252 G T PRAMEF7 3'UTR 0.28 TCGA-DU-6392-01 1 1323366 1323366 G T CCNL2 Silent p.A362A 0.10 TCGA-DU-6392-01 1 1325839 1325839 C A CCNL2 Missense_Mutation p.K288N 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 1328833 1328833 A T CCNL2 Missense_Mutation p.V201D 0.30 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 1334048 1334048 C T CCNL2 Missense_Mutation p.A98T 0.26 deleterious(0) probably_damaging(0.974) TCGA-DU-6392-01 1 1372468 1372468 G A VWA1 Missense_Mutation p.G79S 0.33 tolerated(0.43) benign(0.252) TCGA-DU-6392-01 1 1387813 1387813 C T ATAD3C Missense_Mutation p.T74M 0.40 deleterious(0) probably_damaging(0.939) TCGA-DU-6392-01 1 14105542 14105542 C T PRDM2 Missense_Mutation p.R418W 0.36 probably_damaging(0.999) TCGA-DU-6392-01 1 14106983 14106983 G A PRDM2 Missense_Mutation p.G898D 0.34 probably_damaging(0.996) TCGA-DU-6392-01 1 1421506 1421506 G A ATAD3B Missense_Mutation p.R327Q 0.20 tolerated(0.09) possibly_damaging(0.581) TCGA-DU-6392-01 1 1421519 1421519 C T ATAD3B Silent p.I331I 0.21 TCGA-DU-6392-01 1 1424620 1424620 G A ATAD3B Missense_Mutation p.A435T 0.33 tolerated(0.07) probably_damaging(0.915) TCGA-DU-6392-01 1 144871856 144871856 C A PDE4DIP Missense_Mutation p.K1702N 0.26 tolerated(0.14) possibly_damaging(0.543) TCGA-DU-6392-01 1 144906428 144906428 A T PDE4DIP Missense_Mutation p.L810H 0.15 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 1 144918898 144918898 G A PDE4DIP Nonsense_Mutation p.R430* 0.04 TCGA-DU-6392-01 1 144930903 144930903 C T PDE4DIP Intron 0.07 TCGA-DU-6392-01 1 144931569 144931569 G A PDE4DIP Intron 0.12 TCGA-DU-6392-01 1 144951923 144951923 G A PDE4DIP Intron 0.10 TCGA-DU-6392-01 1 145115738 145115738 T C SEC22B RNA 0.06 TCGA-DU-6392-01 1 145368545 145368545 T C NBPF10 Missense_Mutation p.F3508S 0.05 benign(0.008) TCGA-DU-6392-01 1 145368641 145368641 G A NBPF10 Missense_Mutation p.S3540N 0.05 benign(0.084) TCGA-DU-6392-01 1 145417034 145417034 G T HFE2 3'UTR 0.46 TCGA-DU-6392-01 1 145441193 145441193 G A TXNIP Missense_Mutation p.C384Y 0.17 tolerated(0.09) possibly_damaging(0.496) TCGA-DU-6392-01 1 145527702 145527702 C T ITGA10 Missense_Mutation p.H48Y 0.52 deleterious(0.03) benign(0.011) TCGA-DU-6392-01 1 145533899 145533899 G T ITGA10 Missense_Mutation p.Q515H 0.31 tolerated(0.12) benign(0.012) TCGA-DU-6392-01 1 145595181 145595181 A C POLR3C Missense_Mutation p.F421V 0.09 deleterious(0) possibly_damaging(0.904) TCGA-DU-6392-01 1 145696730 145696730 G T CD160 Intron 0.61 TCGA-DU-6392-01 1 145763661 145763661 C T PDZK1 3'UTR 0.42 TCGA-DU-6392-01 1 145765147 145765147 G T GPR89A Missense_Mutation p.L414I 0.19 deleterious(0) probably_damaging(0.971) TCGA-DU-6392-01 1 145765405 145765405 G T GPR89A Silent p.S375S 0.24 TCGA-DU-6392-01 1 145771706 145771706 G A GPR89A Nonsense_Mutation p.R312* 0.42 TCGA-DU-6392-01 1 145788835 145788835 C A GPR89A Nonsense_Mutation p.E250* 0.33 TCGA-DU-6392-01 1 146736231 146736231 G T CHD1L Nonsense_Mutation p.E243* 0.31 TCGA-DU-6392-01 1 146739147 146739147 A C CHD1L Missense_Mutation p.K320Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 1469516 1469516 G A ATAD3A 3'UTR 0.47 TCGA-DU-6392-01 1 147090775 147090775 C T BCL9 Missense_Mutation p.R272C 0.28 tolerated(0.06) benign(0) TCGA-DU-6392-01 1 147380253 147380253 G A GJA8 Silent p.Q57Q 0.51 TCGA-DU-6392-01 1 147380559 147380559 C T GJA8 Silent p.T159T 0.44 TCGA-DU-6392-01 1 147408777 147408777 C T GPR89B Missense_Mutation p.R27C 0.45 deleterious(0) benign(0.186) TCGA-DU-6392-01 1 1480373 1480373 C A SSU72 Missense_Mutation p.Q78H 0.09 tolerated(0.05) possibly_damaging(0.785) TCGA-DU-6392-01 1 148594505 148594505 G T NBPF15 Missense_Mutation p.Q626H 0.35 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 1 148594684 148594684 C T NBPF15 3'UTR 0.14 TCGA-DU-6392-01 1 149877520 149877520 C T SV2A Missense_Mutation p.A653T 0.27 tolerated(0.43) possibly_damaging(0.788) TCGA-DU-6392-01 1 149880744 149880744 C A SV2A Missense_Mutation p.S460I 0.10 deleterious(0.03) possibly_damaging(0.862) TCGA-DU-6392-01 1 149903850 149903850 G T MTMR11 Missense_Mutation p.S370Y 0.28 deleterious(0) probably_damaging(0.94) TCGA-DU-6392-01 1 149905806 149905806 C T MTMR11 Missense_Mutation p.R238Q 0.32 tolerated(0.06) probably_damaging(0.915) TCGA-DU-6392-01 1 149936094 149936094 T A OTUD7B Intron 0.12 TCGA-DU-6392-01 1 150040755 150040755 C T VPS45 Silent p.R54R 0.13 TCGA-DU-6392-01 1 150128391 150128391 C T PLEKHO1 Silent p.P103P 0.42 TCGA-DU-6392-01 1 150131488 150131488 C T PLEKHO1 Nonsense_Mutation p.R334* 0.27 TCGA-DU-6392-01 1 150443996 150443996 C A RPRD2 Missense_Mutation p.L858M 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 1 150444346 150444346 T G RPRD2 Silent p.L974L 0.29 TCGA-DU-6392-01 1 150445743 150445743 G T RPRD2 Missense_Mutation p.R1440M 0.20 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 1 150469060 150469060 T C TARS2 Missense_Mutation p.W293R 0.52 tolerated(0.09) benign(0.001) TCGA-DU-6392-01 1 150525644 150525644 C T ADAMTSL4 Nonsense_Mutation p.Q117* 0.36 TCGA-DU-6392-01 1 150525680 150525680 G A ADAMTSL4 Missense_Mutation p.A129T 0.37 tolerated(0.2) benign(0.027) TCGA-DU-6392-01 1 150526083 150526083 G A ADAMTSL4 Missense_Mutation p.A206T 0.27 tolerated(0.62) benign(0) TCGA-DU-6392-01 1 150526472 150526472 G A ADAMTSL4 Silent p.P335P 0.22 TCGA-DU-6392-01 1 150936218 150936218 G A SETDB1 Splice_Site p.X1223_splice 0.41 TCGA-DU-6392-01 1 151011359 151011359 C T BNIPL Missense_Mutation p.T97I 0.09 deleterious(0.01) benign(0.209) TCGA-DU-6392-01 1 151040073 151040073 C T MLLT11 3'UTR 0.29 TCGA-DU-6392-01 1 151105842 151105842 G A SEMA6C Silent p.G669G 0.67 TCGA-DU-6392-01 1 151134363 151134363 G A LYSMD1 Missense_Mutation p.R132C 0.49 tolerated(0.1) benign(0.003) TCGA-DU-6392-01 1 151148979 151148979 C T VPS72 3'UTR 0.57 TCGA-DU-6392-01 1 151196880 151196880 T C PIP5K1A Silent p.L52L 0.12 TCGA-DU-6392-01 1 151261878 151261878 C T ZNF687 Silent p.C832C 0.51 TCGA-DU-6392-01 1 151288718 151288718 C A PI4KB Silent p.G92G 0.12 TCGA-DU-6392-01 1 151315446 151315446 G T RFX5 Missense_Mutation p.S356Y 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.629) TCGA-DU-6392-01 1 151372573 151372573 G A PSMB4 Missense_Mutation p.R86H 0.43 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 1 151400673 151400673 G A POGZ Missense_Mutation p.T262I 0.15 deleterious(0.03) benign(0.323) TCGA-DU-6392-01 1 151664940 151664940 C A SNX27 Silent p.G423G 0.13 TCGA-DU-6392-01 1 151752494 151752494 G A TDRKH Silent p.I118I 0.46 TCGA-DU-6392-01 1 151779922 151779922 G A RORC 3'UTR 0.30 TCGA-DU-6392-01 1 152058011 152058011 G A TCHHL1 Missense_Mutation p.A716V 0.47 tolerated(0.14) benign(0.057) TCGA-DU-6392-01 1 152059177 152059177 G A TCHHL1 Silent p.V327V 0.43 TCGA-DU-6392-01 1 152080388 152080388 G A TCHH Missense_Mutation p.R1769C 0.32 unknown(0) TCGA-DU-6392-01 1 152082035 152082035 G A TCHH Missense_Mutation p.R1220C 0.53 unknown(0) TCGA-DU-6392-01 1 152082671 152082671 G A TCHH Missense_Mutation p.R1008W 0.39 unknown(0) TCGA-DU-6392-01 1 152082939 152082939 G A TCHH Silent p.R918R 0.51 TCGA-DU-6392-01 1 152085221 152085221 G A TCHH Nonsense_Mutation p.Q158* 0.48 TCGA-DU-6392-01 1 152127497 152127497 G A RPTN Missense_Mutation p.T693I 0.33 deleterious(0) possibly_damaging(0.649) TCGA-DU-6392-01 1 152128585 152128585 G T RPTN Missense_Mutation p.H330Q 0.08 tolerated(0.25) benign(0.041) TCGA-DU-6392-01 1 152186822 152186822 G T HRNR Missense_Mutation p.S2428Y 0.11 unknown(0) TCGA-DU-6392-01 1 152191231 152191231 T C HRNR Silent p.E958E 0.07 TCGA-DU-6392-01 1 152193229 152193229 C T HRNR Silent p.Q292Q 0.47 TCGA-DU-6392-01 1 152275432 152275432 C T FLG Missense_Mutation p.G3977D 0.43 unknown(0) TCGA-DU-6392-01 1 152279460 152279460 G T FLG Silent p.S2634S 0.09 TCGA-DU-6392-01 1 152279721 152279721 C T FLG Silent p.S2547S 0.38 TCGA-DU-6392-01 1 152281063 152281063 G T FLG Missense_Mutation p.S2100Y 0.08 possibly_damaging(0.608) TCGA-DU-6392-01 1 152282658 152282658 G A FLG Silent p.A1568A 0.38 TCGA-DU-6392-01 1 152284256 152284256 G A FLG Missense_Mutation p.R1036C 0.47 probably_damaging(0.993) TCGA-DU-6392-01 1 152284806 152284806 C T FLG Silent p.R852R 0.50 TCGA-DU-6392-01 1 152325257 152325257 G A FLG2 Missense_Mutation p.H1669Y 0.37 benign(0.403) TCGA-DU-6392-01 1 152327756 152327756 G A FLG2 Missense_Mutation p.H836Y 0.43 unknown(0) TCGA-DU-6392-01 1 152328811 152328811 G T FLG2 Missense_Mutation p.S484Y 0.45 unknown(0) TCGA-DU-6392-01 1 152329824 152329824 G T FLG2 Missense_Mutation p.H146Q 0.15 unknown(0) TCGA-DU-6392-01 1 152671789 152671789 C T LCE2A 3'UTR 0.31 TCGA-DU-6392-01 1 152733255 152733255 G T KPRP Missense_Mutation p.Q397H 0.43 tolerated(0.15) benign(0.163) TCGA-DU-6392-01 1 152857311 152857311 G T SMCP 3'UTR 0.36 TCGA-DU-6392-01 1 153312884 153312884 C A PGLYRP4 Missense_Mutation p.R266M 0.32 tolerated(0.12) probably_damaging(0.952) TCGA-DU-6392-01 1 153330827 153330827 C A S100A9 Missense_Mutation p.S23Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 153430402 153430403 - T S100A7 Frame_Shift_Ins p.D63Gfs*4 0.32 TCGA-DU-6392-01 1 153591315 153591315 G T S100A13 3'UTR 0.37 TCGA-DU-6392-01 1 153598926 153598926 T G S100A13 Missense_Mutation p.E8A 0.16 deleterious(0.03) possibly_damaging(0.76) TCGA-DU-6392-01 1 153598968 153598968 C T S100A13 5'UTR 0.15 TCGA-DU-6392-01 1 15361333 15361333 C T KAZN Silent p.R169R 0.26 TCGA-DU-6392-01 1 153637767 153637767 G A ILF2 Missense_Mutation p.S169F 0.34 deleterious(0.03) benign(0.309) TCGA-DU-6392-01 1 153665989 153665989 G T NPR1 3'UTR 0.39 TCGA-DU-6392-01 1 153719517 153719517 C A INTS3 Missense_Mutation p.L135M 0.49 tolerated(0.14) probably_damaging(0.961) TCGA-DU-6392-01 1 153730127 153730127 G A INTS3 Missense_Mutation p.R346H 0.50 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 153733342 153733342 C T INTS3 Missense_Mutation p.R453W 0.13 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 1 153745765 153745765 C T INTS3 3'UTR 0.38 TCGA-DU-6392-01 1 153800488 153800488 C T GATAD2B Splice_Site p.X112_splice 0.44 TCGA-DU-6392-01 1 15382733 15382733 G A KAZN Silent p.Q291Q 0.39 TCGA-DU-6392-01 1 153909042 153909042 G A DENND4B Silent p.S805S 0.41 TCGA-DU-6392-01 1 153920936 153920936 G A CRTC2 Missense_Mutation p.T620I 0.38 deleterious(0.02) possibly_damaging(0.583) TCGA-DU-6392-01 1 154029414 154029414 C A NUP210L Missense_Mutation p.E1039D 0.47 tolerated(0.34) benign(0.048) TCGA-DU-6392-01 1 154125288 154125288 A G NUP210L Silent p.C88C 0.45 TCGA-DU-6392-01 1 154127368 154127368 C T NUP210L Silent p.E51E 0.38 TCGA-DU-6392-01 1 154163714 154163714 G T TPM3 Missense_Mutation p.A64D 0.18 tolerated(0.39) benign(0.137) TCGA-DU-6392-01 1 154184972 154184972 G T C1orf43 Missense_Mutation p.L157I 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 1 154245846 154245846 G T HAX1 Missense_Mutation p.D30Y 0.30 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 1 154247708 154247708 C T HAX1 Missense_Mutation p.S212F 0.43 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 1 154303299 154303299 C T ATP8B2 Silent p.C66C 0.09 TCGA-DU-6392-01 1 154459139 154459139 G A SHE Nonsense_Mutation p.R349* 0.44 TCGA-DU-6392-01 1 154493951 154493951 C T TDRD10 Missense_Mutation p.P122L 0.45 tolerated(1) benign(0) TCGA-DU-6392-01 1 154520276 154520276 G T TDRD10 3'UTR 0.32 TCGA-DU-6392-01 1 154524631 154524631 C T UBE2Q1 Missense_Mutation p.D302N 0.37 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 154543676 154543676 T G CHRNB2 Missense_Mutation p.M126R 0.08 tolerated(0.19) benign(0.251) TCGA-DU-6392-01 1 154562663 154562663 C T ADAR Silent p.K831K 0.48 TCGA-DU-6392-01 1 154898882 154898882 G A PMVK Silent p.R130R 0.10 TCGA-DU-6392-01 1 154933454 154933454 T C PYGO2 Missense_Mutation p.Q51R 0.14 deleterious(0.01) probably_damaging(0.956) TCGA-DU-6392-01 1 154962879 154962879 C T FLAD1 Missense_Mutation p.R477W 0.29 deleterious(0.01) possibly_damaging(0.773) TCGA-DU-6392-01 1 154988695 154988695 G T ZBTB7B Splice_Site p.X419_splice 0.20 TCGA-DU-6392-01 1 154997063 154997063 G T DCST2 Missense_Mutation p.L543M 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 155003095 155003095 G A DCST2 Missense_Mutation p.R278C 0.20 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 1 155005152 155005152 T A DCST2 Nonsense_Mutation p.K178* 0.16 TCGA-DU-6392-01 1 155029698 155029698 C T ADAM15 Nonsense_Mutation p.R395* 0.33 TCGA-DU-6392-01 1 155039407 155039407 T C EFNA4 Silent p.H105H 0.10 TCGA-DU-6392-01 1 155058919 155058919 C T EFNA3 Missense_Mutation p.P206L 0.49 deleterious(0.03) probably_damaging(0.987) TCGA-DU-6392-01 1 155103872 155103872 C T EFNA1 Silent p.I50I 0.38 TCGA-DU-6392-01 1 155105979 155105979 C T EFNA1 Missense_Mutation p.S130F 0.37 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 1 155110071 155110071 G A SLC50A1 Missense_Mutation p.G106E 0.51 deleterious(0.02) benign(0.398) TCGA-DU-6392-01 1 155110754 155110754 C A SLC50A1 Silent p.T221T 0.38 TCGA-DU-6392-01 1 155152225 155152225 G A TRIM46 Missense_Mutation p.R468H 0.31 deleterious(0.02) possibly_damaging(0.874) TCGA-DU-6392-01 1 155161934 155161934 C T MUC1 Missense_Mutation p.G67S 0.39 tolerated(0.72) benign(0) TCGA-DU-6392-01 1 155169847 155169847 C A THBS3 Missense_Mutation p.R589M 0.15 deleterious(0.02) probably_damaging(0.942) TCGA-DU-6392-01 1 155174654 155174654 T G THBS3 Missense_Mutation p.H213P 0.07 tolerated(0.24) benign(0.087) TCGA-DU-6392-01 1 155188193 155188193 C T MTX1 3'Flank 0.08 TCGA-DU-6392-01 1 155217722 155217722 G T FAM189B Missense_Mutation p.P620T 0.37 deleterious(0.03) benign(0.05) TCGA-DU-6392-01 1 155218211 155218211 A G FAM189B Missense_Mutation p.S522P 0.43 tolerated(0.07) benign(0.002) TCGA-DU-6392-01 1 155220472 155220472 G A FAM189B Missense_Mutation p.R369C 0.39 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 1 155233072 155233072 G A CLK2 Silent p.F478F 0.45 TCGA-DU-6392-01 1 155254415 155254415 C A HCN3 Missense_Mutation p.P319H 0.39 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 1 155258082 155258082 C A HCN3 Missense_Mutation p.S718Y 0.33 deleterious_low_confidence(0) benign(0.193) TCGA-DU-6392-01 1 155258092 155258092 G T HCN3 Missense_Mutation p.Q721H 0.17 tolerated_low_confidence(0.84) benign(0.343) TCGA-DU-6392-01 1 155311800 155311800 C T ASH1L Missense_Mutation p.R2796H 0.36 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-DU-6392-01 1 155317611 155317611 C T ASH1L Missense_Mutation p.A2547T 0.38 tolerated_low_confidence(0.1) probably_damaging(0.931) TCGA-DU-6392-01 1 155349914 155349915 - A ASH1L Intron 0.23 TCGA-DU-6392-01 1 155447933 155447933 C A ASH1L Missense_Mutation p.Q1576H 0.55 tolerated_low_confidence(0.09) probably_damaging(0.985) TCGA-DU-6392-01 1 155449532 155449532 T C ASH1L Silent p.G1043G 0.16 TCGA-DU-6392-01 1 15546060 15546060 G A TMEM51 Missense_Mutation p.A195T 0.45 tolerated(0.12) benign(0.005) TCGA-DU-6392-01 1 155631138 155631138 G A YY1AP1 Missense_Mutation p.P457L 0.38 deleterious(0.01) possibly_damaging(0.654) TCGA-DU-6392-01 1 155642405 155642405 A C YY1AP1 Missense_Mutation p.F315V 0.44 tolerated(0.07) benign(0.347) TCGA-DU-6392-01 1 155649201 155649201 G A YY1AP1 Missense_Mutation p.R180W 0.27 deleterious(0.01) possibly_damaging(0.462) TCGA-DU-6392-01 1 155649258 155649258 C A YY1AP1 Nonsense_Mutation p.E161* 0.28 TCGA-DU-6392-01 1 155695804 155695804 C A DAP3 Missense_Mutation p.P156T 0.19 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 155740923 155740923 C T GON4L Missense_Mutation p.A861T 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-DU-6392-01 1 155774865 155774865 C T GON4L Missense_Mutation p.G507D 0.25 tolerated(0.11) probably_damaging(0.969) TCGA-DU-6392-01 1 155884087 155884087 G T KIAA0907 Missense_Mutation p.T557N 0.61 deleterious(0.02) benign(0.426) TCGA-DU-6392-01 1 1558852 1558852 C T MIB2 Missense_Mutation p.A122V 0.31 tolerated(0.08) probably_damaging(0.921) TCGA-DU-6392-01 1 155899590 155899590 C A KIAA0907 Missense_Mutation p.K99N 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-DU-6392-01 1 155912066 155912066 G A RXFP4 Missense_Mutation p.R189H 0.33 tolerated(0.07) benign(0.008) TCGA-DU-6392-01 1 155932403 155932403 C T ARHGEF2 Missense_Mutation p.R361H 0.44 deleterious(0) probably_damaging(0.937) TCGA-DU-6392-01 1 155932767 155932767 C T ARHGEF2 Missense_Mutation p.R311Q 0.31 deleterious(0.05) benign(0.443) TCGA-DU-6392-01 1 156006719 156006719 C T UBQLN4 3'UTR 0.30 TCGA-DU-6392-01 1 156038068 156038068 C T RAB25 Missense_Mutation p.R83C 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-6392-01 1 156046973 156046973 C T MEX3A Missense_Mutation p.D319N 0.36 tolerated(0.25) benign(0.078) TCGA-DU-6392-01 1 1560486 1560486 C T MIB2 Silent p.G329G 0.38 TCGA-DU-6392-01 1 156104987 156104987 G A LMNA Missense_Mutation p.A274T 0.08 deleterious(0.03) benign(0.394) TCGA-DU-6392-01 1 156202117 156202117 G T PMF1 Missense_Mutation p.Q56H 0.08 tolerated_low_confidence(0.06) probably_damaging(0.977) TCGA-DU-6392-01 1 156214110 156214110 C T PAQR6 Missense_Mutation p.A200T 0.53 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 1 156228930 156228930 G A SMG5 Missense_Mutation p.R770C 0.48 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 1 156268735 156268735 C T VHLL Silent p.T82T 0.55 TCGA-DU-6392-01 1 156287301 156287301 C T CCT3 Missense_Mutation p.R266Q 0.13 tolerated(0.07) possibly_damaging(0.874) TCGA-DU-6392-01 1 156347153 156347153 G T RHBG Missense_Mutation p.Q83H 0.32 deleterious(0.02) benign(0.038) TCGA-DU-6392-01 1 1563491 1563491 C T MIB2 Silent p.I706I 0.45 TCGA-DU-6392-01 1 156593868 156593868 C T HAPLN2 Missense_Mutation p.R119C 0.45 deleterious(0.01) possibly_damaging(0.636) TCGA-DU-6392-01 1 156670687 156670687 A C CRABP2 Silent p.T76T 0.26 TCGA-DU-6392-01 1 156706423 156706423 G T RRNAD1 Splice_Site p.X436_splice 0.12 TCGA-DU-6392-01 1 156708198 156708198 C T MRPL24 Silent p.K72K 0.42 TCGA-DU-6392-01 1 156819161 156819161 A G INSRR Missense_Mutation p.Y441H 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 1 156880106 156880106 A G PEAR1 Missense_Mutation p.T587A 0.31 deleterious(0.01) possibly_damaging(0.54) TCGA-DU-6392-01 1 156914914 156914914 G A ARHGEF11 Missense_Mutation p.A963V 0.34 tolerated(0.17) benign(0.015) TCGA-DU-6392-01 1 157014177 157014177 G T ARHGEF11 5'UTR 0.10 TCGA-DU-6392-01 1 157494299 157494299 G T FCRL5 Missense_Mutation p.A670D 0.10 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 1 1575652 1575652 G T CDK11B Missense_Mutation p.L416M 0.49 unknown(0) TCGA-DU-6392-01 1 157805642 157805642 G T CD5L Missense_Mutation p.A120D 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 1 15789268 15789268 C A CELA2A Missense_Mutation p.L90I 0.09 tolerated(0.08) probably_damaging(0.917) TCGA-DU-6392-01 1 15798562 15798562 A G CELA2A 3'UTR 0.44 TCGA-DU-6392-01 1 15802621 15802621 A G CELA2B Translation_Start_Site p.M1? 0.08 deleterious(0.02) benign(0.035) TCGA-DU-6392-01 1 15802639 15802639 C T CELA2B Silent p.L7L 0.44 TCGA-DU-6392-01 1 158064462 158064462 G A KIRREL Missense_Mutation p.R609H 0.37 tolerated(0.09) benign(0.011) TCGA-DU-6392-01 1 15812483 15812483 G A CELA2B Missense_Mutation p.S194N 0.38 tolerated(0.08) benign(0.026) TCGA-DU-6392-01 1 158224912 158224912 G A CD1A Missense_Mutation p.A33T 0.34 tolerated(0.1) benign(0.019) TCGA-DU-6392-01 1 158225851 158225851 G T CD1A Missense_Mutation p.G128V 0.08 tolerated(0.38) benign(0.066) TCGA-DU-6392-01 1 158227281 158227281 G A CD1A Silent p.A318A 0.35 TCGA-DU-6392-01 1 158298712 158298712 G A CD1B Missense_Mutation p.R327W 0.24 tolerated(0.47) benign(0.015) TCGA-DU-6392-01 1 158326667 158326667 G A CD1E Missense_Mutation p.R383H 0.26 tolerated(0.15) benign(0.231) TCGA-DU-6392-01 1 158516915 158516915 T C OR6Y1 3'Flank 0.41 TCGA-DU-6392-01 1 158612230 158612230 C T SPTA1 Missense_Mutation p.A1570T 0.32 tolerated(0.11) benign(0.088) TCGA-DU-6392-01 1 158614141 158614141 G A SPTA1 Missense_Mutation p.R1414C 0.34 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 158637679 158637679 C T SPTA1 Nonsense_Mutation p.W669* 0.19 TCGA-DU-6392-01 1 158641244 158641244 C A SPTA1 Splice_Site p.X497_splice 0.27 TCGA-DU-6392-01 1 158687330 158687330 C T OR6K3 Silent p.T192T 0.37 TCGA-DU-6392-01 1 158735969 158735969 G T OR6N1 Missense_Mutation p.F168L 0.38 deleterious(0.01) possibly_damaging(0.597) TCGA-DU-6392-01 1 158747053 158747053 C T OR6N2 Missense_Mutation p.A125T 0.64 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 158943460 158943460 A G PYHIN1 Silent p.A461A 0.08 TCGA-DU-6392-01 1 159015218 159015218 G A IFI16 Missense_Mutation p.M487I 0.13 tolerated(0.38) benign(0.113) TCGA-DU-6392-01 1 159284386 159284386 G A OR10J3 Missense_Mutation p.R22W 0.39 deleterious(0.02) benign(0) TCGA-DU-6392-01 1 15964861 15964861 G T DDI2 Missense_Mutation p.G231V 0.40 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 1 159683348 159683348 G A CRP Silent p.G214G 0.12 TCGA-DU-6392-01 1 15987550 15987550 C T RSC1A1 Missense_Mutation p.S396F 0.48 deleterious(0) probably_damaging(0.942) TCGA-DU-6392-01 1 159897171 159897171 C T IGSF9 Silent p.Q1168Q 0.55 TCGA-DU-6392-01 1 159900180 159900180 C T IGSF9 Silent p.P621P 0.22 TCGA-DU-6392-01 1 159921585 159921585 G A SLAMF9 Missense_Mutation p.L246F 0.43 deleterious(0.02) probably_damaging(0.997) TCGA-DU-6392-01 1 160012180 160012180 C T KCNJ10 Missense_Mutation p.R48H 0.32 tolerated(0.56) possibly_damaging(0.575) TCGA-DU-6392-01 1 160064677 160064677 C T IGSF8 Missense_Mutation p.G142S 0.41 tolerated(0.59) benign(0.036) TCGA-DU-6392-01 1 160097377 160097377 C T ATP1A2 Missense_Mutation p.R262W 0.52 deleterious(0) possibly_damaging(0.706) TCGA-DU-6392-01 1 160162604 160162604 G A CASQ1 Missense_Mutation p.V98I 0.26 tolerated(0.2) benign(0.041) TCGA-DU-6392-01 1 160165307 160165307 G A CASQ1 Missense_Mutation p.A212T 0.47 deleterious(0.04) possibly_damaging(0.48) TCGA-DU-6392-01 1 160261620 160261620 G A COPA Missense_Mutation p.R1092C 0.31 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 160275249 160275249 G A COPA Silent p.N556N 0.07 TCGA-DU-6392-01 1 160283846 160283846 G T COPA Missense_Mutation p.P259H 0.13 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 1 160318821 160318821 G A NCSTN Missense_Mutation p.V75I 0.24 deleterious(0.03) benign(0.266) TCGA-DU-6392-01 1 160321854 160321854 G A NCSTN Missense_Mutation p.R285H 0.33 tolerated(0.77) benign(0.009) TCGA-DU-6392-01 1 160340879 160340879 G A NHLH1 Missense_Mutation p.A120T 0.26 deleterious(0.02) benign(0.025) TCGA-DU-6392-01 1 160460977 160460977 C T SLAMF6 Missense_Mutation p.C195Y 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 160461053 160461053 C A SLAMF6 Nonsense_Mutation p.G170* 0.12 TCGA-DU-6392-01 1 160580424 160580424 G A SLAMF1 3'UTR 0.24 TCGA-DU-6392-01 1 16060322 16060322 G A PLEKHM2 Missense_Mutation p.A985T 0.34 tolerated(0.35) benign(0.008) TCGA-DU-6392-01 1 160604616 160604616 C A SLAMF1 Missense_Mutation p.G163C 0.29 deleterious(0.02) benign(0.195) TCGA-DU-6392-01 1 16070707 16070707 C T TMEM82 Missense_Mutation p.S130L 0.40 deleterious(0) probably_damaging(0.927) TCGA-DU-6392-01 1 160771667 160771667 G A LY9 Intron 0.35 TCGA-DU-6392-01 1 160786519 160786519 C T LY9 Missense_Mutation p.A403V 0.49 tolerated(0.05) probably_damaging(0.934) TCGA-DU-6392-01 1 160854649 160854649 G T ITLN1 Missense_Mutation p.L7M 0.05 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-DU-6392-01 1 160969502 160969502 G T F11R Missense_Mutation p.L244I 0.27 tolerated(0.57) benign(0.006) TCGA-DU-6392-01 1 160990900 160990900 C T F11R 5'UTR 0.27 TCGA-DU-6392-01 1 161011486 161011486 G A USF1 Nonsense_Mutation p.Q143* 0.23 TCGA-DU-6392-01 1 161018566 161018567 - T ARHGAP30 Frame_Shift_Ins p.E749Rfs*3 0.25 TCGA-DU-6392-01 1 161044518 161044518 C A PVRL4 Missense_Mutation p.V295L 0.57 tolerated(0.08) benign(0.072) TCGA-DU-6392-01 1 161130759 161130759 G A USP21 Missense_Mutation p.R110H 0.45 tolerated_low_confidence(0.08) benign(0.025) TCGA-DU-6392-01 1 161134625 161134625 A T USP21 Missense_Mutation p.H462L 0.28 deleterious(0) benign(0.172) TCGA-DU-6392-01 1 161179310 161179310 C T NDUFS2 Silent p.I184I 0.31 TCGA-DU-6392-01 1 161188748 161188748 C T FCER1G 3'UTR 0.11 TCGA-DU-6392-01 1 161201048 161201048 G T NR1I3 Intron 0.49 TCGA-DU-6392-01 1 161275672 161275672 C A MPZ Missense_Mutation p.K247N 0.12 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-DU-6392-01 1 161326568 161326568 A G SDHC Missense_Mutation p.T115A 0.32 tolerated(0.64) benign(0.001) TCGA-DU-6392-01 1 161483700 161483700 C T FCGR2A Missense_Mutation p.P253L 0.20 deleterious(0.04) benign(0.069) TCGA-DU-6392-01 1 161487948 161487948 T C FCGR2A 3'UTR 0.08 TCGA-DU-6392-01 1 161495419 161495419 G A HSPA6 Missense_Mutation p.R324Q 0.41 tolerated_low_confidence(0.05) benign(0.006) TCGA-DU-6392-01 1 161569458 161569458 A G FCGR2C Intron 0.40 TCGA-DU-6392-01 1 161599807 161599807 A G FCGR3B Missense_Mutation p.V63A 0.42 deleterious(0.02) benign(0.384) TCGA-DU-6392-01 1 161654774 161654774 C A RPL31P11 RNA 0.12 TCGA-DU-6392-01 1 161681736 161681736 C T FCRLA Missense_Mutation p.A194V 0.32 tolerated(0.15) benign(0.229) TCGA-DU-6392-01 1 161723043 161723043 G T DUSP12 Missense_Mutation p.D285Y 0.08 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 1 161753881 161753881 G A ATF6 Missense_Mutation p.V117I 0.55 deleterious(0.04) probably_damaging(0.996) TCGA-DU-6392-01 1 161789436 161789436 G T ATF6 Missense_Mutation p.R308M 0.18 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 1 161790922 161790922 A G ATF6 Silent p.A386A 0.06 TCGA-DU-6392-01 1 162270451 162270451 C T NOS1AP Missense_Mutation p.T100M 0.41 deleterious(0) benign(0.228) TCGA-DU-6392-01 1 162326911 162326911 A G NOS1AP Silent p.Q308Q 0.09 TCGA-DU-6392-01 1 162337149 162337149 C T NOS1AP Silent p.D471D 0.36 TCGA-DU-6392-01 1 16235929 16235929 G A SPEN Missense_Mutation p.R332H 0.32 probably_damaging(0.996) TCGA-DU-6392-01 1 16245447 16245447 A T SPEN Silent p.G474G 0.10 TCGA-DU-6392-01 1 162470727 162470727 G A UHMK1 Missense_Mutation p.G196R 0.32 deleterious(0.01) benign(0.077) TCGA-DU-6392-01 1 16254739 16254739 C T SPEN Silent p.Y668Y 0.09 TCGA-DU-6392-01 1 16260357 16260357 C A SPEN Missense_Mutation p.P2541H 0.11 probably_damaging(0.999) TCGA-DU-6392-01 1 16260841 16260841 G A SPEN Silent p.G2702G 0.29 TCGA-DU-6392-01 1 16272784 16272784 C T ZBTB17 Missense_Mutation p.D134N 0.33 tolerated_low_confidence(0.09) benign(0.002) TCGA-DU-6392-01 1 163310177 163310177 C A NUF2 Silent p.S210S 0.07 TCGA-DU-6392-01 1 163315595 163315595 G T NUF2 Missense_Mutation p.S312I 0.08 deleterious(0.04) benign(0.043) TCGA-DU-6392-01 1 163317594 163317594 A C NUF2 Missense_Mutation p.E330D 0.33 deleterious(0.01) possibly_damaging(0.865) TCGA-DU-6392-01 1 16343580 16343580 G A HSPB7 Missense_Mutation p.R108W 0.25 tolerated(0.09) benign(0.105) TCGA-DU-6392-01 1 16353030 16353030 G T CLCNKA Splice_Site p.X167_splice 0.49 TCGA-DU-6392-01 1 16353844 16353844 C A CLCNKA Missense_Mutation p.S232Y 0.22 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 1 16359021 16359021 G T CLCNKA Missense_Mutation p.Q643H 0.15 deleterious(0) possibly_damaging(0.709) TCGA-DU-6392-01 1 16374411 16374411 C A CLCNKB Missense_Mutation p.P124T 0.10 deleterious(0) possibly_damaging(0.856) TCGA-DU-6392-01 1 16374441 16374441 G A CLCNKB Missense_Mutation p.V134I 0.47 tolerated(0.18) benign(0.007) TCGA-DU-6392-01 1 16376349 16376349 T C CLCNKB Silent p.C302C 0.38 TCGA-DU-6392-01 1 16456915 16456915 C A EPHA2 Splice_Site p.X826_splice 0.12 TCGA-DU-6392-01 1 16461639 16461639 C T EPHA2 Missense_Mutation p.V492M 0.33 tolerated(0.17) possibly_damaging(0.53) TCGA-DU-6392-01 1 16535349 16535349 C A ARHGEF19 Silent p.L67L 0.16 TCGA-DU-6392-01 1 16535421 16535421 C A ARHGEF19 Silent p.P43P 0.46 TCGA-DU-6392-01 1 16535435 16535435 C T ARHGEF19 Missense_Mutation p.A39T 0.22 tolerated_low_confidence(1) benign(0) TCGA-DU-6392-01 1 165370439 165370439 G T RXRG 3'UTR 0.42 TCGA-DU-6392-01 1 16558674 16558674 G A RSG1 Missense_Mutation p.R216C 0.35 tolerated(0.14) benign(0.003) TCGA-DU-6392-01 1 165638676 165638676 A G ALDH9A1 Silent p.N314N 0.22 TCGA-DU-6392-01 1 16641705 16641705 G A FBXO42 Missense_Mutation p.T70I 0.42 deleterious(0.01) possibly_damaging(0.711) TCGA-DU-6392-01 1 1669782 1669782 C T SLC35E2 Silent p.R188R 0.44 TCGA-DU-6392-01 1 16731549 16731549 G A SPATA21 Nonsense_Mutation p.Q242* 0.10 TCGA-DU-6392-01 1 167666427 167666427 C T RCSD1 Missense_Mutation p.A189V 0.53 tolerated(0.22) benign(0.278) TCGA-DU-6392-01 1 16770223 16770223 G A NECAP2 Silent p.T63T 0.25 TCGA-DU-6392-01 1 167757089 167757089 C T MPZL1 Silent p.S247S 0.47 TCGA-DU-6392-01 1 167757092 167757092 C T MPZL1 Silent p.G248G 0.36 TCGA-DU-6392-01 1 167778997 167778997 A C ADCY10 Missense_Mutation p.I1584S 0.43 deleterious(0) possibly_damaging(0.623) TCGA-DU-6392-01 1 16782362 16782362 C A NECAP2 Intron 0.09 TCGA-DU-6392-01 1 167825527 167825527 C T ADCY10 Missense_Mutation p.A683T 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 167830117 167830117 G T ADCY10 Missense_Mutation p.H601N 0.21 tolerated(0.3) benign(0.439) TCGA-DU-6392-01 1 167847744 167847744 A C ADCY10 Missense_Mutation p.V449G 0.43 tolerated(0.35) benign(0.071) TCGA-DU-6392-01 1 167865875 167865875 A G ADCY10 Missense_Mutation p.C233R 0.07 deleterious(0) probably_damaging(0.968) TCGA-DU-6392-01 1 168054973 168054973 G A GPR161 Silent p.Y482Y 0.31 TCGA-DU-6392-01 1 168160619 168160619 A C TIPRL Missense_Mutation p.T133P 0.10 tolerated(0.15) possibly_damaging(0.828) TCGA-DU-6392-01 1 1685602 1685602 G A NADK Missense_Mutation p.A475V 0.08 deleterious(0) probably_damaging(0.961) TCGA-DU-6392-01 1 16901153 16901153 C T NBPF1 Missense_Mutation p.E743K 0.11 deleterious(0) probably_damaging(0.917) TCGA-DU-6392-01 1 16901708 16901708 G A NBPF1 Silent p.D712D 0.06 TCGA-DU-6392-01 1 16916394 16916394 C T NBPF1 Missense_Mutation p.R93K 0.11 deleterious(0.02) benign(0.003) TCGA-DU-6392-01 1 16921465 16921465 G A NBPF1 5'UTR 0.08 TCGA-DU-6392-01 1 169366576 169366576 G A CCDC181 Silent p.H422H 0.44 TCGA-DU-6392-01 1 169439274 169439274 A G SLC19A2 Missense_Mutation p.W320R 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 16945678 16945678 A T RP5-1182A14.5 3'Flank 0.12 TCGA-DU-6392-01 1 169495202 169495202 T G F5 Missense_Mutation p.N1885H 0.07 deleterious(0.01) possibly_damaging(0.689) TCGA-DU-6392-01 1 169512306 169512306 C A F5 Missense_Mutation p.K674N 0.47 tolerated(1) benign(0.006) TCGA-DU-6392-01 1 169565263 169565263 A C SELP Silent p.T667T 0.08 TCGA-DU-6392-01 1 169582345 169582345 C A SELP Missense_Mutation p.E199D 0.42 deleterious(0.02) possibly_damaging(0.457) TCGA-DU-6392-01 1 169698503 169698503 C T SELE Missense_Mutation p.R305K 0.29 tolerated(0.5) benign(0.002) TCGA-DU-6392-01 1 169762769 169762769 C T METTL18 Missense_Mutation p.G23E 0.51 tolerated(0.76) benign(0.006) TCGA-DU-6392-01 1 169773305 169773305 G A C1orf112 Silent p.Q134Q 0.46 TCGA-DU-6392-01 1 169777011 169777011 C A C1orf112 Missense_Mutation p.L215I 0.10 deleterious(0.02) possibly_damaging(0.88) TCGA-DU-6392-01 1 169798741 169798741 G T C1orf112 Intron 0.56 TCGA-DU-6392-01 1 169806110 169806110 C A C1orf112 Missense_Mutation p.L528M 0.17 deleterious(0.01) probably_damaging(0.959) TCGA-DU-6392-01 1 169831808 169831808 C A SCYL3 Missense_Mutation p.E362D 0.08 tolerated(0.62) benign(0.002) TCGA-DU-6392-01 1 17017756 17017756 C T ESPNP RNA 0.30 TCGA-DU-6392-01 1 170511715 170511715 C A GORAB Missense_Mutation p.A193D 0.08 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 1 170695481 170695481 G A PRRX1 Missense_Mutation p.V180I 0.31 deleterious(0.03) possibly_damaging(0.46) TCGA-DU-6392-01 1 170964535 170964535 C T MROH9 Silent p.C400C 0.08 TCGA-DU-6392-01 1 171080085 171080085 G T FMO3 Missense_Mutation p.K258N 0.12 tolerated(0.27) possibly_damaging(0.827) TCGA-DU-6392-01 1 171086349 171086349 A G FMO3 Missense_Mutation p.K456E 0.15 deleterious(0.02) benign(0.232) TCGA-DU-6392-01 1 171086350 171086350 A C FMO3 Missense_Mutation p.K456T 0.08 deleterious(0.04) benign(0.315) TCGA-DU-6392-01 1 171173168 171173168 C T FMO2 Silent p.F264F 0.28 TCGA-DU-6392-01 1 171251226 171251226 T G FMO1 Missense_Mutation p.F313V 0.20 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 171251411 171251411 C T FMO1 Silent p.P374P 0.37 TCGA-DU-6392-01 1 171310771 171310771 G T FMO4 Missense_Mutation p.W490C 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-DU-6392-01 1 171482312 171482312 G A PRRC2C Splice_Site p.X95_splice 0.47 TCGA-DU-6392-01 1 171509384 171509384 G A PRRC2C Missense_Mutation p.V925I 0.12 unknown(0) TCGA-DU-6392-01 1 171510589 171510589 C T PRRC2C Silent p.D1326D 0.13 TCGA-DU-6392-01 1 171553144 171553144 C A PRRC2C Missense_Mutation p.L2485I 0.08 probably_damaging(0.99) TCGA-DU-6392-01 1 171553178 171553178 T A PRRC2C Missense_Mutation p.V2496D 0.15 probably_damaging(0.997) TCGA-DU-6392-01 1 171707535 171707535 C T VAMP4 Missense_Mutation p.R7H 0.39 tolerated(0.07) benign(0.028) TCGA-DU-6392-01 1 1722020 1722020 G A GNB1 Silent p.I171I 0.16 TCGA-DU-6392-01 1 172348281 172348281 G T DNM3 Missense_Mutation p.D673Y 0.14 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 172411395 172411395 G A PIGC Missense_Mutation p.A123V 0.22 tolerated(0.08) benign(0.131) TCGA-DU-6392-01 1 172547524 172547524 A G SUCO Missense_Mutation p.D476G 0.46 deleterious(0.04) benign(0.309) TCGA-DU-6392-01 1 172558792 172558792 C T SUCO Nonsense_Mutation p.Q851* 0.39 TCGA-DU-6392-01 1 17292335 17292335 G A CROCC Missense_Mutation p.R1508H 0.10 possibly_damaging(0.715) TCGA-DU-6392-01 1 17303034 17303034 C T MFAP2 Missense_Mutation p.G83E 0.30 tolerated(0.11) probably_damaging(0.932) TCGA-DU-6392-01 1 17303391 17303391 C A MFAP2 Splice_Site p.X52_splice 0.32 TCGA-DU-6392-01 1 17313646 17313646 G A ATP13A2 Missense_Mutation p.P993L 0.46 deleterious(0.02) possibly_damaging(0.495) TCGA-DU-6392-01 1 173470208 173470208 C A SLC9C2 3'UTR 0.36 TCGA-DU-6392-01 1 173721016 173721016 C A KLHL20 Silent p.A237A 0.12 TCGA-DU-6392-01 1 173725148 173725148 C A KLHL20 Missense_Mutation p.P313H 0.25 deleterious(0.03) probably_damaging(0.959) TCGA-DU-6392-01 1 173744789 173744789 T A KLHL20 Silent p.P482P 0.11 TCGA-DU-6392-01 1 173780371 173780371 C T CENPL Missense_Mutation p.G23S 0.45 tolerated(0.33) benign(0.053) TCGA-DU-6392-01 1 173799819 173799819 A G DARS2 Missense_Mutation p.I106V 0.16 tolerated(0.63) benign(0.002) TCGA-DU-6392-01 1 17413088 17413088 G A PADI2 Silent p.G254G 0.41 TCGA-DU-6392-01 1 174210653 174210653 C T RABGAP1L Missense_Mutation p.A192V 0.33 tolerated(0.06) possibly_damaging(0.775) TCGA-DU-6392-01 1 174671315 174671315 C A RABGAP1L Missense_Mutation p.S697Y 0.43 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 175049406 175049406 C A TNN Missense_Mutation p.L298M 0.18 tolerated(0.25) benign(0.091) TCGA-DU-6392-01 1 175054622 175054622 G A TNN Missense_Mutation p.G439D 0.50 deleterious(0) probably_damaging(0.973) TCGA-DU-6392-01 1 175087717 175087717 C A TNN Missense_Mutation p.L803M 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 175116130 175116130 C T TNN Missense_Mutation p.R1275C 0.18 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 175299312 175299312 G A TNR Missense_Mutation p.R1231W 0.52 deleterious(0) probably_damaging(0.966) TCGA-DU-6392-01 1 175324739 175324739 C T TNR Missense_Mutation p.S1050N 0.28 deleterious(0.01) possibly_damaging(0.744) TCGA-DU-6392-01 1 175360539 175360539 G A TNR Silent p.S464S 0.47 TCGA-DU-6392-01 1 175372720 175372720 G T TNR Missense_Mutation p.H178N 0.38 deleterious(0) possibly_damaging(0.517) TCGA-DU-6392-01 1 17552316 17552316 G A PADI1 Missense_Mutation p.R140H 0.46 deleterious(0.03) benign(0.08) TCGA-DU-6392-01 1 1756901 1756901 C A GNB1 5'UTR 0.12 TCGA-DU-6392-01 1 17575639 17575639 C A PADI3 Missense_Mutation p.L3M 0.14 tolerated(0.22) benign(0.029) TCGA-DU-6392-01 1 17593293 17593293 T C PADI3 Missense_Mutation p.V163A 0.45 tolerated(0.84) benign(0.003) TCGA-DU-6392-01 1 17609630 17609630 G T PADI3 3'UTR 0.29 TCGA-DU-6392-01 1 176105629 176105629 C T RFWD2 Missense_Mutation p.V296M 0.21 deleterious(0) possibly_damaging(0.576) TCGA-DU-6392-01 1 176525904 176525904 G A PAPPA2 Missense_Mutation p.G149D 0.33 tolerated_low_confidence(0.26) benign(0.007) TCGA-DU-6392-01 1 176679142 176679142 T C PAPPA2 Missense_Mutation p.Y1161H 0.23 tolerated(0.9) benign(0.008) TCGA-DU-6392-01 1 176708801 176708802 - T PAPPA2 Frame_Shift_Ins p.L1282Ffs*4 0.33 TCGA-DU-6392-01 1 17682923 17682923 C T PADI4 Silent p.H509H 0.26 TCGA-DU-6392-01 1 176833575 176833575 G A ASTN1 Missense_Mutation p.R1244W 0.46 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-DU-6392-01 1 176853555 176853555 G T ASTN1 Missense_Mutation p.P1049Q 0.13 tolerated(0.1) possibly_damaging(0.806) TCGA-DU-6392-01 1 176913103 176913103 C T ASTN1 Silent p.V767V 0.24 TCGA-DU-6392-01 1 177247738 177247738 G A BRINP2 Missense_Mutation p.R351Q 0.43 tolerated(0.33) benign(0.054) TCGA-DU-6392-01 1 177899015 177899015 C T SEC16B Missense_Mutation p.R1054H 0.42 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 177911069 177911069 C A SEC16B Missense_Mutation p.S663I 0.27 deleterious(0) possibly_damaging(0.694) TCGA-DU-6392-01 1 178408655 178408655 C A RASAL2 Missense_Mutation p.P258H 0.34 deleterious(0.01) benign(0.413) TCGA-DU-6392-01 1 178433521 178433521 C T RASAL2 Silent p.L1121L 0.33 TCGA-DU-6392-01 1 178822899 178822899 C T ANGPTL1 Missense_Mutation p.A283T 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-DU-6392-01 1 178875981 178875981 C T RALGPS2 Silent p.A567A 0.11 TCGA-DU-6392-01 1 179013184 179013184 G A FAM20B Missense_Mutation p.A68T 0.25 tolerated(0.51) benign(0.045) TCGA-DU-6392-01 1 179057219 179057219 T C TOR3A Silent p.F271F 0.33 TCGA-DU-6392-01 1 17934328 17934328 G A ARHGEF10L Silent p.A155A 0.35 TCGA-DU-6392-01 1 17942691 17942691 G A ARHGEF10L Missense_Mutation p.V277I 0.10 tolerated(0.4) benign(0.069) TCGA-DU-6392-01 1 17949529 17949529 G A ARHGEF10L Silent p.A353A 0.37 TCGA-DU-6392-01 1 179562841 179562841 G T TDRD5 Missense_Mutation p.R160I 0.06 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 1 17961055 17961055 C T ARHGEF10L Silent p.H581H 0.33 TCGA-DU-6392-01 1 179815811 179815811 T A TOR1AIP2 Missense_Mutation p.S270C 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 179834104 179834104 G A IFRG15 Missense_Mutation p.L70F 0.15 tolerated_low_confidence(0.14) probably_damaging(0.934) TCGA-DU-6392-01 1 179887200 179887200 G T TOR1AIP1 Missense_Mutation p.K526N 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 1 179983260 179983260 G A CEP350 Missense_Mutation p.A558T 0.61 benign(0.005) TCGA-DU-6392-01 1 179989222 179989222 G A CEP350 Silent p.L771L 0.41 TCGA-DU-6392-01 1 180012259 180012259 G A CEP350 Silent p.L1477L 0.08 TCGA-DU-6392-01 1 180044227 180044227 C T CEP350 Nonsense_Mutation p.R1880* 0.20 TCGA-DU-6392-01 1 180056829 180056829 C T CEP350 Silent p.I2134I 0.40 TCGA-DU-6392-01 1 180062302 180062302 G T CEP350 Missense_Mutation p.K2354N 0.18 benign(0.347) TCGA-DU-6392-01 1 180063428 180063428 C A CEP350 Missense_Mutation p.L2730M 0.28 probably_damaging(0.999) TCGA-DU-6392-01 1 180064777 180064777 C T CEP350 Silent p.D2877D 0.13 TCGA-DU-6392-01 1 18021739 18021739 C T ARHGEF10L Missense_Mutation p.P1091S 0.37 tolerated(0.13) possibly_damaging(0.616) TCGA-DU-6392-01 1 180217458 180217458 G A LHX4 Missense_Mutation p.D39N 0.44 deleterious(0) probably_damaging(0.979) TCGA-DU-6392-01 1 18023646 18023646 G A ARHGEF10L Missense_Mutation p.S1204N 0.62 tolerated(0.14) benign(0.131) TCGA-DU-6392-01 1 180243724 180243724 C A LHX4 3'UTR 0.08 TCGA-DU-6392-01 1 180804025 180804025 G T XPR1 Missense_Mutation p.A384S 0.20 tolerated(0.07) probably_damaging(0.951) TCGA-DU-6392-01 1 180907788 180907788 G T KIAA1614 Missense_Mutation p.K953N 0.45 tolerated(0.06) benign(0.047) TCGA-DU-6392-01 1 180910420 180910420 C T KIAA1614 Missense_Mutation p.P1053L 0.15 tolerated(1) benign(0.002) TCGA-DU-6392-01 1 180913461 180913461 A G KIAA1614 Intron 0.22 TCGA-DU-6392-01 1 181018422 181018422 G A MR1 Missense_Mutation p.R101H 0.46 tolerated(0.62) benign(0.003) TCGA-DU-6392-01 1 181019222 181019222 C T MR1 Missense_Mutation p.A135V 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 18149677 18149677 C T ACTL8 Silent p.C58C 0.32 TCGA-DU-6392-01 1 182353692 182353692 G A GLUL Missense_Mutation p.R324C 0.36 deleterious(0.04) benign(0.436) TCGA-DU-6392-01 1 182369445 182369445 A G TEDDM1 Missense_Mutation p.V59A 0.40 tolerated(0.33) benign(0.013) TCGA-DU-6392-01 1 182642036 182642036 C T RGS8 5'UTR 0.31 TCGA-DU-6392-01 1 182827295 182827295 C A DHX9 Missense_Mutation p.L244M 0.29 tolerated(0.11) probably_damaging(0.999) TCGA-DU-6392-01 1 182853875 182853875 C T DHX9 Missense_Mutation p.R1130C 0.45 deleterious(0.01) benign(0.394) TCGA-DU-6392-01 1 183087260 183087260 C T LAMC1 Missense_Mutation p.R657C 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 183096535 183096535 A G LAMC1 Missense_Mutation p.D1040G 0.51 deleterious(0) benign(0.309) TCGA-DU-6392-01 1 183204709 183204709 G A LAMC2 Splice_Site p.X767_splice 0.24 TCGA-DU-6392-01 1 183206503 183206503 G T LAMC2 Missense_Mutation p.R873M 0.48 deleterious(0) possibly_damaging(0.907) TCGA-DU-6392-01 1 183273936 183273936 C T NMNAT2 Intron 0.09 TCGA-DU-6392-01 1 183536117 183536117 G A NCF2 Missense_Mutation p.L288F 0.08 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 1 184688655 184688655 A G EDEM3 Silent p.L333L 0.56 TCGA-DU-6392-01 1 184723757 184723757 G T EDEM3 Silent p.G8G 0.33 TCGA-DU-6392-01 1 184764288 184764288 G A FAM129A Silent p.S870S 0.47 TCGA-DU-6392-01 1 1849365 1849365 C A TMEM52 Missense_Mutation p.G196C 0.09 deleterious(0) probably_damaging(0.911) TCGA-DU-6392-01 1 185067296 185067296 G T RNF2 Missense_Mutation p.S186I 0.09 deleterious(0.02) probably_damaging(0.979) TCGA-DU-6392-01 1 185067376 185067376 G T RNF2 Missense_Mutation p.A213S 0.48 tolerated(0.88) benign(0.01) TCGA-DU-6392-01 1 185089377 185089377 G T TRMT1L Missense_Mutation p.S659Y 0.07 deleterious(0.01) probably_damaging(0.934) TCGA-DU-6392-01 1 185143874 185143875 - A SWT1 Frame_Shift_Ins p.C201Mfs*16 0.23 TCGA-DU-6392-01 1 185153476 185153476 G A SWT1 Missense_Mutation p.G414S 0.48 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 1 185183647 185183647 G A SWT1 Missense_Mutation p.A661T 0.23 tolerated(1) benign(0.008) TCGA-DU-6392-01 1 185267195 185267195 C A IVNS1ABP Missense_Mutation p.S634I 0.18 deleterious(0) benign(0.281) TCGA-DU-6392-01 1 185959455 185959455 C A HMCN1 Missense_Mutation p.P1086H 0.35 probably_damaging(0.999) TCGA-DU-6392-01 1 186031667 186031667 A - HMCN1 Frame_Shift_Del p.N2484Ifs*6 0.31 TCGA-DU-6392-01 1 186045576 186045576 G T HMCN1 Missense_Mutation p.Q2769H 0.26 benign(0.001) TCGA-DU-6392-01 1 186072761 186072761 T G HMCN1 Silent p.T3577T 0.11 TCGA-DU-6392-01 1 186114999 186114999 G A HMCN1 Missense_Mutation p.R4851H 0.44 probably_damaging(0.994) TCGA-DU-6392-01 1 186147631 186147631 C A HMCN1 Missense_Mutation p.P5343T 0.11 probably_damaging(0.995) TCGA-DU-6392-01 1 186282787 186282787 A - TPR 3'UTR 0.29 TCGA-DU-6392-01 1 186286670 186286670 G A TPR Missense_Mutation p.S2295F 0.33 possibly_damaging(0.888) TCGA-DU-6392-01 1 186292915 186292915 G A TPR Missense_Mutation p.A2067V 0.33 benign(0) TCGA-DU-6392-01 1 186329083 186329083 T C TPR Missense_Mutation p.K413E 0.36 benign(0.292) TCGA-DU-6392-01 1 186329453 186329453 A G TPR Silent p.T381T 0.08 TCGA-DU-6392-01 1 186330775 186330775 G T TPR Missense_Mutation p.L313I 0.47 benign(0.364) TCGA-DU-6392-01 1 186332042 186332042 A C TPR Missense_Mutation p.L208R 0.48 possibly_damaging(0.485) TCGA-DU-6392-01 1 18692015 18692015 G A IGSF21 Missense_Mutation p.S280N 0.38 tolerated(0.27) benign(0.003) TCGA-DU-6392-01 1 18809726 18809726 C T KLHDC7A Missense_Mutation p.R751W 0.40 deleterious(0) possibly_damaging(0.513) TCGA-DU-6392-01 1 190250845 190250845 A G BRINP3 Missense_Mutation p.V91A 0.25 tolerated(0.17) benign(0.253) TCGA-DU-6392-01 1 19029660 19029660 C T PAX7 Missense_Mutation p.A342V 0.39 tolerated(0.07) benign(0.236) TCGA-DU-6392-01 1 19166109 19166109 G A TAS1R2 Missense_Mutation p.T835I 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 19202874 19202874 C T ALDH4A1 Missense_Mutation p.V425M 0.45 tolerated(0.12) possibly_damaging(0.871) TCGA-DU-6392-01 1 192127873 192127873 G A RGS18 Missense_Mutation p.E36K 0.24 tolerated(0.14) possibly_damaging(0.606) TCGA-DU-6392-01 1 192150425 192150425 G A RGS18 Missense_Mutation p.G96E 0.48 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 193149591 193149591 G A B3GALT2 Nonsense_Mutation p.R368* 0.21 TCGA-DU-6392-01 1 19403375 19403375 C A UBR4 Nonsense_Mutation p.E5116* 0.09 TCGA-DU-6392-01 1 19440100 19440100 G A UBR4 Intron 0.47 TCGA-DU-6392-01 1 19443764 19443764 G T UBR4 Missense_Mutation p.L3592M 0.31 benign(0.164) TCGA-DU-6392-01 1 19446192 19446192 A C UBR4 Missense_Mutation p.N3438K 0.40 possibly_damaging(0.84) TCGA-DU-6392-01 1 19464554 19464554 G A UBR4 Silent p.G2951G 0.41 TCGA-DU-6392-01 1 19493516 19493516 C A UBR4 Missense_Mutation p.S1370I 0.14 possibly_damaging(0.719) TCGA-DU-6392-01 1 19503154 19503154 C T UBR4 Missense_Mutation p.R902Q 0.15 benign(0.001) TCGA-DU-6392-01 1 19550001 19550001 G T EMC1 Silent p.T755T 0.41 TCGA-DU-6392-01 1 1957156 1957156 G A GABRD Missense_Mutation p.G150D 0.51 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 19585391 19585391 G A MRTO4 3'UTR 0.44 TCGA-DU-6392-01 1 19609371 19609371 C T AKR7A3 Missense_Mutation p.A284T 0.44 tolerated(0.12) benign(0.053) TCGA-DU-6392-01 1 1961455 1961455 C A GABRD Missense_Mutation p.L365I 0.20 tolerated(0.16) probably_damaging(0.997) TCGA-DU-6392-01 1 196274387 196274387 G A KCNT2 Missense_Mutation p.L858F 0.47 deleterious(0.03) benign(0.18) TCGA-DU-6392-01 1 196288613 196288613 C T KCNT2 Splice_Site p.X783_splice 0.21 TCGA-DU-6392-01 1 196300299 196300299 A G KCNT2 Missense_Mutation p.L697S 0.05 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 1 19635124 19635124 G A AKR7A2 Missense_Mutation p.T104I 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 196367748 196367748 A G KCNT2 Silent p.C413C 0.43 TCGA-DU-6392-01 1 196451510 196451510 C A KCNT2 Splice_Site p.X92_splice 0.21 TCGA-DU-6392-01 1 196654269 196654269 A C CFH Missense_Mutation p.E289A 0.46 tolerated(0.17) possibly_damaging(0.745) TCGA-DU-6392-01 1 196659244 196659244 G T CFH Missense_Mutation p.R404I 0.18 tolerated(0.15) possibly_damaging(0.541) TCGA-DU-6392-01 1 196659281 196659281 C T CFH Silent p.C416C 0.54 TCGA-DU-6392-01 1 196884207 196884207 T A CFHR4 Silent p.L492L 0.10 TCGA-DU-6392-01 1 196887380 196887380 C A CFHR4 Missense_Mutation p.N526K 0.44 deleterious(0.01) possibly_damaging(0.754) TCGA-DU-6392-01 1 197059134 197059134 G A ASPM Nonsense_Mutation p.R3304* 0.34 TCGA-DU-6392-01 1 197071586 197071586 G A ASPM Silent p.A2265A 0.29 TCGA-DU-6392-01 1 197072572 197072572 C A ASPM Nonsense_Mutation p.G1937* 0.07 TCGA-DU-6392-01 1 197073511 197073511 T C ASPM Missense_Mutation p.K1624E 0.11 deleterious(0.04) benign(0.018) TCGA-DU-6392-01 1 197074288 197074288 G A ASPM Nonsense_Mutation p.Q1365* 0.47 TCGA-DU-6392-01 1 197094253 197094253 C T ASPM Missense_Mutation p.R1002H 0.16 deleterious(0.02) benign(0.433) TCGA-DU-6392-01 1 19712004 19712004 G A CAPZB Silent p.S70S 0.37 TCGA-DU-6392-01 1 197157461 197157461 G A ZBTB41 Missense_Mutation p.R503W 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 197325986 197325986 C T CRB1 Silent p.I338I 0.12 TCGA-DU-6392-01 1 197326118 197326118 C A CRB1 Silent p.V382V 0.13 TCGA-DU-6392-01 1 197404300 197404300 G A CRB1 Missense_Mutation p.G1103R 0.40 deleterious(0) probably_damaging(0.916) TCGA-DU-6392-01 1 198288718 198288718 C T NEK7 3'UTR 0.44 TCGA-DU-6392-01 1 198676000 198676000 G A PTPRC Missense_Mutation p.E275K 0.47 tolerated(0.27) benign(0.201) TCGA-DU-6392-01 1 198828060 198828060 C T MIR181B1 RNA 0.36 TCGA-DU-6392-01 1 199996969 199996969 A G NR5A2 5'UTR 0.14 TCGA-DU-6392-01 1 200376235 200376235 C T ZNF281 Missense_Mutation p.D867N 0.33 deleterious(0) possibly_damaging(0.815) TCGA-DU-6392-01 1 200377831 200377831 G C ZNF281 Missense_Mutation p.H335D 0.06 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 200801338 200801338 G A CAMSAP2 Missense_Mutation p.R219Q 0.34 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 1 200817991 200817991 T G CAMSAP2 Missense_Mutation p.N698K 0.12 deleterious(0.01) possibly_damaging(0.476) TCGA-DU-6392-01 1 200869240 200869240 G A C1orf106 Silent p.T63T 0.39 TCGA-DU-6392-01 1 200877871 200877871 G A C1orf106 Silent p.V196V 0.09 TCGA-DU-6392-01 1 200943316 200943316 G A KIF21B Silent p.C1607C 0.15 TCGA-DU-6392-01 1 200948844 200948844 C T KIF21B Splice_Site p.X1327_splice 0.45 TCGA-DU-6392-01 1 200956013 200956013 C T KIF21B Silent p.P1216P 0.48 TCGA-DU-6392-01 1 20097881 20097881 C A TMCO4 Nonsense_Mutation p.G92* 0.35 TCGA-DU-6392-01 1 201018173 201018173 A T CACNA1S Silent p.P1432P 0.39 TCGA-DU-6392-01 1 201029852 201029852 G T CACNA1S Silent p.T1116T 0.30 TCGA-DU-6392-01 1 201052448 201052448 C T CACNA1S Missense_Mutation p.R412Q 0.44 deleterious(0.03) probably_damaging(0.91) TCGA-DU-6392-01 1 201183408 201183408 C A IGFN1 Silent p.T2944T 0.09 TCGA-DU-6392-01 1 201187676 201187676 C T IGFN1 Missense_Mutation p.A3263V 0.43 benign(0.055) TCGA-DU-6392-01 1 201193940 201193940 C T IGFN1 Missense_Mutation p.T3475I 0.66 probably_damaging(0.982) TCGA-DU-6392-01 1 201196086 201196086 G A IGFN1 Silent p.R3621R 0.50 TCGA-DU-6392-01 1 201292216 201292216 G A PKP1 Missense_Mutation p.A548T 0.29 tolerated(0.26) probably_damaging(0.998) TCGA-DU-6392-01 1 201330380 201330380 C T TNNT2 Intron 0.42 TCGA-DU-6392-01 1 201350901 201350901 G A LAD1 3'UTR 0.59 TCGA-DU-6392-01 1 201352498 201352498 C T LAD1 Missense_Mutation p.D399N 0.47 deleterious(0.01) benign(0.008) TCGA-DU-6392-01 1 201437522 201437522 C T PHLDA3 3'UTR 0.47 TCGA-DU-6392-01 1 201489572 201489572 C A RPS10P7 RNA 0.45 TCGA-DU-6392-01 1 201821264 201821264 C T IPO9 Missense_Mutation p.P183S 0.16 tolerated(0.08) benign(0.392) TCGA-DU-6392-01 1 201828116 201828116 C A IPO9 Missense_Mutation p.L488I 0.14 tolerated(0.41) benign(0.013) TCGA-DU-6392-01 1 201838754 201838754 A G IPO9 Missense_Mutation p.T681A 0.51 deleterious(0.03) benign(0.035) TCGA-DU-6392-01 1 201970880 201970880 G T RNPEP Missense_Mutation p.V471L 0.46 tolerated(0.07) benign(0.012) TCGA-DU-6392-01 1 202128442 202128442 G A PTPN7 Missense_Mutation p.T135M 0.46 tolerated(0.14) benign(0.008) TCGA-DU-6392-01 1 20224082 20224082 G A OTUD3 Missense_Mutation p.R178Q 0.32 deleterious(0.01) probably_damaging(0.965) TCGA-DU-6392-01 1 202245467 202245467 G A LGR6 Silent p.P154P 0.33 TCGA-DU-6392-01 1 202287536 202287536 C T LGR6 Missense_Mutation p.A702V 0.38 tolerated(0.56) benign(0.166) TCGA-DU-6392-01 1 20231450 20231450 G A OTUD3 Missense_Mutation p.V269M 0.29 tolerated(0.83) benign(0.002) TCGA-DU-6392-01 1 20234222 20234222 G A OTUD3 Missense_Mutation p.A394T 0.43 tolerated(0.08) benign(0.426) TCGA-DU-6392-01 1 202718086 202718086 G T KDM5B Missense_Mutation p.T668N 0.50 tolerated(0.31) benign(0.002) TCGA-DU-6392-01 1 202727577 202727577 C T KDM5B Missense_Mutation p.R380H 0.33 deleterious(0) probably_damaging(0.927) TCGA-DU-6392-01 1 202866077 202866077 C T KLHL12 Missense_Mutation p.V282M 0.07 tolerated(0.2) benign(0.19) TCGA-DU-6392-01 1 202917539 202917539 C A ADIPOR1 Nonsense_Mutation p.E51* 0.48 TCGA-DU-6392-01 1 203029425 203029425 G A PPFIA4 Silent p.S382S 0.40 TCGA-DU-6392-01 1 203045491 203045491 A G PPFIA4 Silent p.G693G 0.39 TCGA-DU-6392-01 1 203098113 203098113 C T ADORA1 Silent p.I48I 0.53 TCGA-DU-6392-01 1 203188359 203188359 C T CHIT1 Silent p.E338E 0.27 TCGA-DU-6392-01 1 203316599 203316600 - C FMOD Frame_Shift_Ins p.A267Gfs*31 0.25 TCGA-DU-6392-01 1 203472684 203472684 C T OPTC Silent p.L279L 0.18 TCGA-DU-6392-01 1 203798692 203798692 G A ZC3H11A Missense_Mutation p.V138I 0.07 deleterious(0.03) benign(0.171) TCGA-DU-6392-01 1 203819706 203819707 - A ZC3H11A Frame_Shift_Ins p.R670Tfs*2 0.24 TCGA-DU-6392-01 1 203819731 203819731 C T ZC3H11A Silent p.H676H 0.33 TCGA-DU-6392-01 1 204082138 204082138 C A SOX13 Missense_Mutation p.P32H 0.43 tolerated_low_confidence(0.18) benign(0.155) TCGA-DU-6392-01 1 204103686 204103686 G T ETNK2 Missense_Mutation p.L349I 0.25 tolerated(0.21) probably_damaging(0.927) TCGA-DU-6392-01 1 204109171 204109171 T C ETNK2 Missense_Mutation p.E287G 0.11 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 1 20412576 20412576 G A PLA2G5 Missense_Mutation p.S14N 0.23 deleterious(0) benign(0.136) TCGA-DU-6392-01 1 204587428 204587428 G A LRRN2 Missense_Mutation p.R565W 0.42 deleterious(0) benign(0.001) TCGA-DU-6392-01 1 204587656 204587656 C T LRRN2 Missense_Mutation p.A489T 0.36 tolerated(0.57) benign(0.033) TCGA-DU-6392-01 1 204913447 204913447 G A NFASC Missense_Mutation p.A2T 0.37 tolerated_low_confidence(0.07) possibly_damaging(0.755) TCGA-DU-6392-01 1 204943842 204943842 C T NFASC Silent p.N483N 0.40 TCGA-DU-6392-01 1 205053118 205053118 C T TMEM81 Missense_Mutation p.E111K 0.56 tolerated(0.47) benign(0.112) TCGA-DU-6392-01 1 20517755 20517755 C T UBXN10 Missense_Mutation p.T234I 0.37 deleterious(0.01) possibly_damaging(0.701) TCGA-DU-6392-01 1 205238741 205238741 C A TMCC2 Missense_Mutation p.P471T 0.07 tolerated(0.06) probably_damaging(0.944) TCGA-DU-6392-01 1 205240997 205240997 G A TMCC2 Silent p.Q625Q 0.54 TCGA-DU-6392-01 1 205350761 205350761 G T LEMD1 3'UTR 0.52 TCGA-DU-6392-01 1 205389672 205389672 G T LEMD1 5'UTR 0.27 TCGA-DU-6392-01 1 205628524 205628524 C T SLC45A3 Silent p.L500L 0.43 TCGA-DU-6392-01 1 205628647 205628647 C T SLC45A3 Silent p.A459A 0.33 TCGA-DU-6392-01 1 205767837 205767837 C T SLC41A1 Silent p.A268A 0.34 TCGA-DU-6392-01 1 205819191 205819191 G A PM20D1 Missense_Mutation p.R4W 0.47 tolerated_low_confidence(0.2) benign(0.346) TCGA-DU-6392-01 1 205904889 205904889 G A SLC26A9 Silent p.F20F 0.44 TCGA-DU-6392-01 1 206225082 206225082 G A AVPR1B Missense_Mutation p.M214I 0.45 tolerated(1) benign(0.002) TCGA-DU-6392-01 1 206243553 206243553 C A C1orf186 5'UTR 0.14 TCGA-DU-6392-01 1 206619487 206619487 G A SRGAP2 Silent p.S561S 0.33 TCGA-DU-6392-01 1 206626618 206626618 A C SRGAP2 Missense_Mutation p.K665T 0.47 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 1 206632041 206632041 C T SRGAP2 Silent p.S774S 0.27 TCGA-DU-6392-01 1 206632219 206632219 C T SRGAP2 Missense_Mutation p.R834W 0.35 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-DU-6392-01 1 206634618 206634618 G A SRGAP2 Silent p.R937R 0.50 TCGA-DU-6392-01 1 206647680 206647680 G A IKBKE Missense_Mutation p.G32R 0.54 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 206669509 206669509 C T IKBKE 3'UTR 0.27 TCGA-DU-6392-01 1 206669559 206669559 G A IKBKE 3'UTR 0.41 TCGA-DU-6392-01 1 206760238 206760238 G A RASSF5 Silent p.V395V 0.42 TCGA-DU-6392-01 1 206902780 206902780 A G MAPKAPK2 Missense_Mutation p.Q175R 0.09 tolerated(0.2) benign(0.03) TCGA-DU-6392-01 1 206944381 206944381 C T IL10 Silent p.L83L 0.08 TCGA-DU-6392-01 1 207131913 207131913 G T FCAMR Missense_Mutation p.S561Y 0.07 tolerated(0.28) benign(0.08) TCGA-DU-6392-01 1 207143541 207143541 A G FCAMR 5'UTR 0.54 TCGA-DU-6392-01 1 207240872 207240872 G A PFKFB2 Missense_Mutation p.V221M 0.10 probably_damaging(0.999) TCGA-DU-6392-01 1 207297591 207297591 G A C4BPA Missense_Mutation p.G196S 0.09 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 1 207499017 207499017 C T CD55 Missense_Mutation p.P177S 0.16 tolerated(0.44) benign(0.013) TCGA-DU-6392-01 1 207643049 207643049 G A CR2 Missense_Mutation p.C276Y 0.15 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 207753865 207753865 G C CR1 Missense_Mutation p.C1708S 0.32 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 1 207753903 207753903 C T CR1 Silent p.L1721L 0.32 TCGA-DU-6392-01 1 207940505 207940505 G T CD46 Missense_Mutation p.S274I 0.08 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 1 208063122 208063122 G A CD34 Intron 0.36 TCGA-DU-6392-01 1 208206762 208206762 G A PLXNA2 Missense_Mutation p.H1653Y 0.42 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 1 208215490 208215490 G A PLXNA2 Silent p.I1413I 0.54 TCGA-DU-6392-01 1 208215502 208215502 G T PLXNA2 Silent p.L1409L 0.34 TCGA-DU-6392-01 1 208217962 208217962 G A PLXNA2 Silent p.I1255I 0.50 TCGA-DU-6392-01 1 208219374 208219374 C T PLXNA2 Missense_Mutation p.R1115H 0.10 tolerated(0.36) probably_damaging(0.994) TCGA-DU-6392-01 1 208252614 208252614 T G PLXNA2 Missense_Mutation p.Q859H 0.11 deleterious(0.04) benign(0) TCGA-DU-6392-01 1 20964524 20964524 G T PINK1 Missense_Mutation p.G193W 0.52 deleterious(0.01) possibly_damaging(0.877) TCGA-DU-6392-01 1 209778919 209778919 G A CAMK1G Missense_Mutation p.R112Q 0.06 tolerated(0.17) probably_damaging(0.994) TCGA-DU-6392-01 1 209779784 209779784 C T CAMK1G Silent p.Y185Y 0.39 TCGA-DU-6392-01 1 209781261 209781261 C T CAMK1G Silent p.G206G 0.39 TCGA-DU-6392-01 1 20991058 20991058 C T KIF17 3'UTR 0.12 TCGA-DU-6392-01 1 209933361 209933361 C T TRAF3IP3 5'UTR 0.18 TCGA-DU-6392-01 1 209933413 209933413 C A TRAF3IP3 Missense_Mutation p.P10H 0.15 deleterious(0) possibly_damaging(0.839) TCGA-DU-6392-01 1 209950737 209950737 G A TRAF3IP3 Missense_Mutation p.R365Q 0.17 tolerated(0.42) benign(0.01) TCGA-DU-6392-01 1 209963041 209963041 G A IRF6 Missense_Mutation p.P384S 0.35 deleterious(0.03) benign(0.044) TCGA-DU-6392-01 1 21016709 21016709 C T KIF17 Silent p.T451T 0.09 TCGA-DU-6392-01 1 210273780 210273780 A G SYT14 Missense_Mutation p.I425V 0.29 tolerated(1) benign(0.002) TCGA-DU-6392-01 1 21031096 21031096 G T KIF17 Missense_Mutation p.L323I 0.13 deleterious(0.01) probably_damaging(0.983) TCGA-DU-6392-01 1 21031210 21031210 C T KIF17 Missense_Mutation p.V285I 0.40 tolerated(1) benign(0.004) TCGA-DU-6392-01 1 210329132 210329132 C A SYT14 Missense_Mutation p.L456I 0.25 deleterious(0.02) benign(0.274) TCGA-DU-6392-01 1 210796895 210796895 G A HHAT Missense_Mutation p.R425H 0.32 tolerated(0.15) benign(0.02) TCGA-DU-6392-01 1 210847742 210847742 T C HHAT 3'UTR 0.29 TCGA-DU-6392-01 1 211093189 211093189 G T KCNH1 Missense_Mutation p.L419M 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 21137325 21137325 C T EIF4G3 Silent p.P1500P 0.32 TCGA-DU-6392-01 1 211444642 211444642 G T RCOR3 Missense_Mutation p.D98Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 211533282 211533282 C T TRAF5 Missense_Mutation p.P136L 0.30 tolerated(0.18) benign(0.007) TCGA-DU-6392-01 1 211749578 211749578 G T SLC30A1 Missense_Mutation p.L226I 0.35 tolerated(0.39) benign(0.024) TCGA-DU-6392-01 1 21191064 21191064 C T EIF4G3 Missense_Mutation p.V921M 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 212141864 212141864 G T INTS7 Silent p.I667I 0.08 TCGA-DU-6392-01 1 212254006 212254006 G T DTL Missense_Mutation p.R392I 0.17 deleterious(0) probably_damaging(0.918) TCGA-DU-6392-01 1 2125253 2125253 G A C1orf86 Missense_Mutation p.R99C 0.44 tolerated(0.07) benign(0.001) TCGA-DU-6392-01 1 212619202 212619202 C A NENF Missense_Mutation p.L125M 0.13 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 1 212964948 212964948 C T NSL1 Missense_Mutation p.C53Y 0.46 tolerated(0.09) probably_damaging(0.999) TCGA-DU-6392-01 1 213009370 213009370 A G C1orf227 Missense_Mutation p.V41A 0.13 tolerated(0.09) benign(0.294) TCGA-DU-6392-01 1 213277798 213277798 C T RPS6KC1 Nonsense_Mutation p.R89* 0.52 TCGA-DU-6392-01 1 213414375 213414375 A G RPS6KC1 Missense_Mutation p.Y519C 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 214171247 214171247 G A PROX1 Missense_Mutation p.A457T 0.09 tolerated(0.74) benign(0.001) TCGA-DU-6392-01 1 214546151 214546151 A G PTPN14 Missense_Mutation p.I980T 0.34 deleterious(0) possibly_damaging(0.805) TCGA-DU-6392-01 1 214556744 214556744 C A PTPN14 Missense_Mutation p.E818D 0.12 tolerated(0.34) probably_damaging(0.99) TCGA-DU-6392-01 1 214557133 214557133 G A PTPN14 Missense_Mutation p.L689F 0.53 tolerated(0.08) benign(0.265) TCGA-DU-6392-01 1 214576228 214576228 G A PTPN14 Silent p.H193H 0.09 TCGA-DU-6392-01 1 214791928 214791928 G T CENPF Missense_Mutation p.E124D 0.47 probably_damaging(0.991) TCGA-DU-6392-01 1 214794038 214794038 G A CENPF Missense_Mutation p.R205H 0.18 probably_damaging(0.998) TCGA-DU-6392-01 1 214811346 214811346 T C CENPF Splice_Site p.X528_splice 0.40 TCGA-DU-6392-01 1 215793456 215793456 G A KCTD3 Silent p.R648R 0.44 TCGA-DU-6392-01 1 215802181 215802181 G A USH2A Missense_Mutation p.A5165V 0.33 benign(0.028) TCGA-DU-6392-01 1 215844346 215844346 C T USH2A Missense_Mutation p.E4701K 0.31 benign(0.025) TCGA-DU-6392-01 1 215847889 215847889 G A USH2A Missense_Mutation p.T4455I 0.18 benign(0.33) TCGA-DU-6392-01 1 21585273 21585273 C A ECE1 Missense_Mutation p.Q225H 0.09 tolerated(0.26) possibly_damaging(0.858) TCGA-DU-6392-01 1 215956253 215956253 G A USH2A Missense_Mutation p.T3471I 0.47 benign(0.005) TCGA-DU-6392-01 1 216052354 216052354 A G USH2A Silent p.N2770N 0.08 TCGA-DU-6392-01 1 216061838 216061838 G A USH2A Missense_Mutation p.T2718I 0.41 benign(0.049) TCGA-DU-6392-01 1 216108117 216108117 G T USH2A Missense_Mutation p.L2381M 0.14 benign(0.438) TCGA-DU-6392-01 1 216166438 216166438 G A USH2A Silent p.G2243G 0.20 TCGA-DU-6392-01 1 216419934 216419934 A G USH2A Silent p.C934C 0.46 TCGA-DU-6392-01 1 216496819 216496819 C T USH2A Missense_Mutation p.G516E 0.35 probably_damaging(1) TCGA-DU-6392-01 1 216692559 216692559 T C ESRRG Missense_Mutation p.Y368C 0.33 deleterious(0) benign(0.075) TCGA-DU-6392-01 1 216824353 216824353 C T ESRRG Missense_Mutation p.R189H 0.39 deleterious(0) probably_damaging(0.933) TCGA-DU-6392-01 1 217793349 217793349 C T GPATCH2 Silent p.Q183Q 0.52 TCGA-DU-6392-01 1 217975157 217975157 C T SPATA17 Nonsense_Mutation p.R324* 0.22 TCGA-DU-6392-01 1 21800061 21800061 C T NBPF3 Missense_Mutation p.A308V 0.40 tolerated(0.07) possibly_damaging(0.739) TCGA-DU-6392-01 1 218609474 218609474 C T TGFB2 Missense_Mutation p.A334V 0.49 tolerated(0.1) benign(0.197) TCGA-DU-6392-01 1 21930309 21930309 C T RAP1GAP Intron 0.30 TCGA-DU-6392-01 1 21937987 21937987 G A RAP1GAP Silent p.H331H 0.49 TCGA-DU-6392-01 1 21938056 21938056 G A RAP1GAP Silent p.D308D 0.38 TCGA-DU-6392-01 1 21946512 21946512 A G RAP1GAP Missense_Mutation p.M69T 0.26 deleterious(0) benign(0.322) TCGA-DU-6392-01 1 220179606 220179606 T G EPRS Missense_Mutation p.N598H 0.10 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 1 220206995 220206995 A G EPRS Silent p.D79D 0.38 TCGA-DU-6392-01 1 220246296 220246296 G T BPNT1 Missense_Mutation p.L77M 0.08 tolerated(0.13) possibly_damaging(0.545) TCGA-DU-6392-01 1 220320874 220320874 T G IARS2 Missense_Mutation p.V979G 0.25 deleterious(0) possibly_damaging(0.703) TCGA-DU-6392-01 1 22047590 22047590 A G USP48 Silent p.D611D 0.37 TCGA-DU-6392-01 1 220804430 220804430 G A MARK1 Silent p.K321K 0.30 TCGA-DU-6392-01 1 220928369 220928369 A G MARC2 Missense_Mutation p.Y118C 0.06 tolerated(0.91) benign(0.004) TCGA-DU-6392-01 1 221057895 221057895 C T HLX Missense_Mutation p.A439V 0.45 tolerated_low_confidence(0.23) benign(0.002) TCGA-DU-6392-01 1 22141118 22141118 G A LDLRAD2 Missense_Mutation p.D105N 0.57 deleterious(0.01) possibly_damaging(0.652) TCGA-DU-6392-01 1 22162127 22162127 G A HSPG2 Silent p.I3453I 0.36 TCGA-DU-6392-01 1 22168809 22168809 C T HSPG2 Missense_Mutation p.R2992H 0.35 probably_damaging(0.964) TCGA-DU-6392-01 1 22181199 22181199 C A HSPG2 Missense_Mutation p.G2065W 0.35 probably_damaging(1) TCGA-DU-6392-01 1 22181426 22181426 C T HSPG2 Silent p.T2016T 0.40 TCGA-DU-6392-01 1 22188562 22188562 G T HSPG2 Missense_Mutation p.P1596H 0.10 probably_damaging(0.981) TCGA-DU-6392-01 1 22200957 22200957 G A HSPG2 Missense_Mutation p.R1200W 0.45 possibly_damaging(0.846) TCGA-DU-6392-01 1 222713568 222713568 C T HHIPL2 Missense_Mutation p.A412T 0.42 deleterious(0.03) benign(0.028) TCGA-DU-6392-01 1 222753158 222753158 C A TAF1A Missense_Mutation p.E116D 0.37 tolerated(0.13) benign(0.187) TCGA-DU-6392-01 1 222801943 222801943 G A MIA3 Missense_Mutation p.E461K 0.14 deleterious(0.04) benign(0.012) TCGA-DU-6392-01 1 222802500 222802500 C T MIA3 Silent p.D646D 0.43 TCGA-DU-6392-01 1 222805573 222805573 C A MIA3 Missense_Mutation p.P1079H 0.11 deleterious(0.01) possibly_damaging(0.56) TCGA-DU-6392-01 1 222838834 222838834 G A MIA3 Missense_Mutation p.G1866D 0.06 deleterious(0) possibly_damaging(0.827) TCGA-DU-6392-01 1 222838933 222838933 G A MIA3 Missense_Mutation p.C1899Y 0.07 tolerated(1) possibly_damaging(0.641) TCGA-DU-6392-01 1 222906080 222906080 C A BROX 3'UTR 0.27 TCGA-DU-6392-01 1 223175814 223175814 G A DISP1 Missense_Mutation p.A359T 0.49 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 1 223176061 223176061 C T DISP1 Missense_Mutation p.T441M 0.34 deleterious(0.02) benign(0.041) TCGA-DU-6392-01 1 22333432 22333432 G A CELA3A Missense_Mutation p.A142T 0.80 deleterious(0) probably_damaging(0.923) TCGA-DU-6392-01 1 223402633 223402633 G A SUSD4 Silent p.C274C 0.53 TCGA-DU-6392-01 1 223441962 223441962 A G SUSD4 Silent p.H139H 0.09 TCGA-DU-6392-01 1 22404969 22404969 G T CDC42 5'UTR 0.40 TCGA-DU-6392-01 1 224340896 224340896 C A FBXO28 Missense_Mutation p.P190H 0.21 deleterious(0) possibly_damaging(0.741) TCGA-DU-6392-01 1 224345333 224345333 C A FBXO28 Missense_Mutation p.A331D 0.17 tolerated(0.1) benign(0.421) TCGA-DU-6392-01 1 224380147 224380147 G T DEGS1 Missense_Mutation p.K313N 0.10 deleterious(0) probably_damaging(0.944) TCGA-DU-6392-01 1 224477369 224477369 G A NVL Silent p.H464H 0.36 TCGA-DU-6392-01 1 224872497 224872497 G A CNIH3 Splice_Site p.X51_splice 0.34 TCGA-DU-6392-01 1 224927118 224927118 C T CNIH3 3'UTR 0.52 TCGA-DU-6392-01 1 226026412 226026412 C T EPHX1 Missense_Mutation p.P141L 0.24 tolerated(0.28) benign(0.109) TCGA-DU-6392-01 1 226026435 226026435 G A EPHX1 Missense_Mutation p.G149S 0.56 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 1 226043589 226043589 T C TMEM63A Missense_Mutation p.I542V 0.38 tolerated(0.6) benign(0.006) TCGA-DU-6392-01 1 226125267 226125267 G T LEFTY2 Silent p.P325P 0.08 TCGA-DU-6392-01 1 226259158 226259158 G A H3F3A Missense_Mutation p.R130H 0.40 tolerated_low_confidence(0.08) benign(0.005) TCGA-DU-6392-01 1 226420727 226420727 T C LIN9 Intron 0.17 TCGA-DU-6392-01 1 226453982 226453982 G A LIN9 Missense_Mutation p.R306W 0.52 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 1 226474112 226474112 G T LIN9 Missense_Mutation p.S165Y 0.24 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 1 226552832 226552832 G A PARP1 Silent p.G843G 0.46 TCGA-DU-6392-01 1 226822474 226822474 G A ITPKB Silent p.D913D 0.43 TCGA-DU-6392-01 1 226829634 226829634 G A ITPKB Silent p.I813I 0.41 TCGA-DU-6392-01 1 227071420 227071420 C T PSEN2 Silent p.N52N 0.31 TCGA-DU-6392-01 1 227300398 227300398 G A CDC42BPA Missense_Mutation p.R622C 0.30 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 227335230 227335230 C A CDC42BPA Missense_Mutation p.D242Y 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 227842667 227842667 G A ZNF678 Missense_Mutation p.C239Y 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-DU-6392-01 1 227919974 227919974 C G JMJD4 3'UTR 0.55 TCGA-DU-6392-01 1 228003901 228003901 G A PRSS38 Missense_Mutation p.G87S 0.24 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 1 228004916 228004916 G T PRSS38 Missense_Mutation p.K106N 0.34 tolerated(0.07) possibly_damaging(0.73) TCGA-DU-6392-01 1 228033778 228033778 T G PRSS38 Missense_Mutation p.F284V 0.50 deleterious(0) probably_damaging(0.914) TCGA-DU-6392-01 1 228033994 228033994 C A PRSS38 3'UTR 0.34 TCGA-DU-6392-01 1 228210547 228210547 G A WNT3A Missense_Mutation p.R84H 0.45 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 22828087 22828087 C A ZBTB40 Missense_Mutation p.L312M 0.09 deleterious(0.02) possibly_damaging(0.665) TCGA-DU-6392-01 1 228284846 228284846 G A ARF1 Missense_Mutation p.G11S 0.33 tolerated_low_confidence(0.6) benign(0.002) TCGA-DU-6392-01 1 228285651 228285651 C G ARF1 Silent p.T161T 0.38 TCGA-DU-6392-01 1 228288868 228288868 C T C1orf35 Silent p.P252P 0.23 TCGA-DU-6392-01 1 228294577 228294577 C T MRPL55 Missense_Mutation p.A127T 0.43 tolerated(0.06) benign(0.22) TCGA-DU-6392-01 1 2283451 2283451 G T MORN1 Intron 0.31 TCGA-DU-6392-01 1 228399636 228399636 C T OBSCN Missense_Mutation p.A51V 0.36 benign(0.419) TCGA-DU-6392-01 1 228402554 228402554 C A OBSCN Missense_Mutation p.S528Y 0.54 probably_damaging(0.988) TCGA-DU-6392-01 1 228402555 228402555 C T OBSCN Silent p.S528S 0.20 TCGA-DU-6392-01 1 228475655 228475655 G T OBSCN Missense_Mutation p.V3698L 0.30 probably_damaging(0.916) TCGA-DU-6392-01 1 22848034 22848034 G A ZBTB40 Missense_Mutation p.V1032I 0.38 tolerated(0.14) benign(0.007) TCGA-DU-6392-01 1 228487104 228487104 G A OBSCN Missense_Mutation p.S4452N 0.54 possibly_damaging(0.588) TCGA-DU-6392-01 1 228487783 228487783 G T OBSCN Missense_Mutation p.D4559Y 0.48 probably_damaging(1) TCGA-DU-6392-01 1 228491436 228491436 C T OBSCN Missense_Mutation p.A4600V 0.24 benign(0.057) TCGA-DU-6392-01 1 228503696 228503696 G T OBSCN Missense_Mutation p.E5344D 0.55 probably_damaging(0.981) TCGA-DU-6392-01 1 228506846 228506846 C T OBSCN Missense_Mutation p.A5755V 0.41 probably_damaging(0.999) TCGA-DU-6392-01 1 228509327 228509327 G A OBSCN Missense_Mutation p.A5886T 0.46 benign(0.365) TCGA-DU-6392-01 1 228509366 228509366 C T OBSCN Missense_Mutation p.R5899W 0.43 probably_damaging(1) TCGA-DU-6392-01 1 228524811 228524811 G A OBSCN Silent p.S6505S 0.36 TCGA-DU-6392-01 1 228598777 228598777 G A TRIM17 Missense_Mutation p.T209M 0.45 deleterious(0.01) benign(0.123) TCGA-DU-6392-01 1 228602720 228602720 G T TRIM17 Silent p.I18I 0.55 TCGA-DU-6392-01 1 228873420 228873420 C T RHOU Missense_Mutation p.A88V 0.14 tolerated(0.63) benign(0.16) TCGA-DU-6392-01 1 2288928 2288928 G T MORN1 Missense_Mutation p.L327M 0.27 tolerated(0.22) possibly_damaging(0.553) TCGA-DU-6392-01 1 22902764 22902764 G A EPHA8 Missense_Mutation p.V72I 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-DU-6392-01 1 22903303 22903303 C T EPHA8 Silent p.G251G 0.50 TCGA-DU-6392-01 1 22927938 22927938 C A EPHA8 Missense_Mutation p.L959M 0.29 tolerated(0.17) probably_damaging(1) TCGA-DU-6392-01 1 229462700 229462700 C A CCSAP Nonsense_Mutation p.E141* 0.12 TCGA-DU-6392-01 1 229588289 229588289 C T NUP133 Missense_Mutation p.A1028T 0.08 deleterious(0.04) probably_damaging(0.989) TCGA-DU-6392-01 1 229623232 229623232 T C NUP133 Silent p.K441K 0.09 TCGA-DU-6392-01 1 22965517 22965517 G A C1QA Missense_Mutation p.A119T 0.56 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 1 22965859 22965859 G A C1QA Missense_Mutation p.D233N 0.50 tolerated(0.05) benign(0.086) TCGA-DU-6392-01 1 229738320 229738320 G A TAF5L Silent p.D198D 0.37 TCGA-DU-6392-01 1 229738582 229738582 C T TAF5L Missense_Mutation p.S111N 0.09 tolerated(0.47) benign(0.152) TCGA-DU-6392-01 1 22974279 22974279 C T C1QC 3'UTR 0.55 TCGA-DU-6392-01 1 229745874 229745874 G A TAF5L Nonsense_Mutation p.R76* 0.09 TCGA-DU-6392-01 1 229763385 229763385 C T URB2 Missense_Mutation p.A2V 0.11 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 1 229773414 229773414 C A URB2 Missense_Mutation p.S1018R 0.31 deleterious(0) possibly_damaging(0.66) TCGA-DU-6392-01 1 229779332 229779332 C A URB2 Silent p.A1229A 0.10 TCGA-DU-6392-01 1 229794945 229794945 G A URB2 Silent p.S1492S 0.36 TCGA-DU-6392-01 1 229794981 229794981 C T URB2 Silent p.L1504L 0.44 TCGA-DU-6392-01 1 22986052 22986052 C T C1QB Missense_Mutation p.P35S 0.14 tolerated(0.36) benign(0.138) TCGA-DU-6392-01 1 22987483 22987483 C T C1QB Silent p.I122I 0.34 TCGA-DU-6392-01 1 230372444 230372444 C T GALNT2 Nonsense_Mutation p.R194* 0.08 TCGA-DU-6392-01 1 230492774 230492774 C T PGBD5 Missense_Mutation p.E140K 0.50 tolerated(0.25) possibly_damaging(0.813) TCGA-DU-6392-01 1 230822730 230822730 C A COG2 Missense_Mutation p.P477H 0.47 tolerated(0.12) benign(0.003) TCGA-DU-6392-01 1 230841942 230841942 C A AGT Missense_Mutation p.K287N 0.30 tolerated(0.81) benign(0.078) TCGA-DU-6392-01 1 230846149 230846149 C A AGT Missense_Mutation p.A150S 0.47 tolerated(0.08) probably_damaging(0.981) TCGA-DU-6392-01 1 230891088 230891088 C T CAPN9 Silent p.I73I 0.22 TCGA-DU-6392-01 1 230895265 230895265 C A CAPN9 Nonsense_Mutation p.C97* 0.50 TCGA-DU-6392-01 1 230928214 230928214 T G CAPN9 Missense_Mutation p.F589V 0.11 deleterious(0.01) possibly_damaging(0.78) TCGA-DU-6392-01 1 230991457 230991457 G A C1orf198 Missense_Mutation p.T114I 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-DU-6392-01 1 231067615 231067615 C T TTC13 Missense_Mutation p.G331D 0.30 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 23111440 23111440 G A EPHB2 Missense_Mutation p.A228T 0.36 tolerated(0.53) benign(0.015) TCGA-DU-6392-01 1 23111559 23111559 C T EPHB2 Silent p.T267T 0.38 TCGA-DU-6392-01 1 231155731 231155731 C A FAM89A Nonsense_Mutation p.E145* 0.11 TCGA-DU-6392-01 1 231344960 231344960 G A TRIM67 Missense_Mutation p.R696H 0.48 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 231349664 231349664 G A TRIM67 Missense_Mutation p.A743T 0.12 deleterious(0.03) probably_damaging(0.984) TCGA-DU-6392-01 1 231362753 231362753 A G C1orf131 Missense_Mutation p.L191P 0.30 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 231472057 231472057 C T EXOC8 Missense_Mutation p.A479T 0.18 tolerated(0.15) benign(0.039) TCGA-DU-6392-01 1 231472244 231472244 C T EXOC8 Silent p.S416S 0.11 TCGA-DU-6392-01 1 231472501 231472501 C A EXOC8 Missense_Mutation p.D331Y 0.34 tolerated(1) benign(0.008) TCGA-DU-6392-01 1 231665031 231665031 A G TSNAX Missense_Mutation p.D16G 0.18 tolerated(0.07) benign(0) TCGA-DU-6392-01 1 231673028 231673028 C T TSNAX Missense_Mutation p.T64I 0.30 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 1 231829962 231829962 C A DISC1 Missense_Mutation p.S153Y 0.32 tolerated(0.34) benign(0.311) TCGA-DU-6392-01 1 231837741 231837741 A G DISC1 Missense_Mutation p.D363G 0.13 deleterious(0.02) benign(0.108) TCGA-DU-6392-01 1 2318951 2318951 G A MORN1 Nonsense_Mutation p.Q89* 0.28 TCGA-DU-6392-01 1 232551265 232551265 G A SIPA1L2 Silent p.L1579L 0.12 TCGA-DU-6392-01 1 232649691 232649691 C T SIPA1L2 Silent p.Q465Q 0.49 TCGA-DU-6392-01 1 232650749 232650749 C T SIPA1L2 Missense_Mutation p.V113I 0.27 tolerated(0.63) benign(0.001) TCGA-DU-6392-01 1 2328570 2328570 C T RER1 Silent p.L33L 0.31 TCGA-DU-6392-01 1 233134179 233134179 C T PCNXL2 Missense_Mutation p.R1870Q 0.43 tolerated(0.17) benign(0.356) TCGA-DU-6392-01 1 233314861 233314861 C T PCNXL2 Missense_Mutation p.A1043T 0.25 deleterious(0.02) benign(0.227) TCGA-DU-6392-01 1 233344278 233344278 C A PCNXL2 Missense_Mutation p.R950M 0.15 deleterious(0) possibly_damaging(0.829) TCGA-DU-6392-01 1 233353846 233353846 G T PCNXL2 Silent p.G863G 0.30 TCGA-DU-6392-01 1 233394057 233394057 C T PCNXL2 Silent p.S517S 0.42 TCGA-DU-6392-01 1 233394358 233394358 G A PCNXL2 Missense_Mutation p.A417V 0.32 tolerated_low_confidence(0.62) benign(0) TCGA-DU-6392-01 1 233518142 233518142 A G MLK4 Silent p.S932S 0.18 TCGA-DU-6392-01 1 233802625 233802625 G A KCNK1 Missense_Mutation p.E214K 0.29 deleterious(0.01) possibly_damaging(0.893) TCGA-DU-6392-01 1 23381585 23381585 G T KDM1A Missense_Mutation p.V272F 0.37 deleterious(0) possibly_damaging(0.86) TCGA-DU-6392-01 1 23385652 23385652 G A KDM1A Missense_Mutation p.G387R 0.14 deleterious(0) possibly_damaging(0.764) TCGA-DU-6392-01 1 2340118 2340118 G A PEX10 Nonsense_Mutation p.R125* 0.22 TCGA-DU-6392-01 1 23415309 23415309 C T LUZP1 3'UTR 0.47 TCGA-DU-6392-01 1 23418567 23418567 G A LUZP1 Missense_Mutation p.L730F 0.39 tolerated_low_confidence(0.76) benign(0.002) TCGA-DU-6392-01 1 23419182 23419182 C T LUZP1 Missense_Mutation p.G525S 0.11 tolerated(0.28) benign(0.026) TCGA-DU-6392-01 1 23420599 23420599 A G LUZP1 Silent p.I52I 0.09 TCGA-DU-6392-01 1 234509404 234509404 C T COA6 5'Flank 0.31 TCGA-DU-6392-01 1 234510123 234510123 T C COA6 Silent p.C90C 0.16 TCGA-DU-6392-01 1 234556471 234556471 C A TARBP1 Missense_Mutation p.V1178L 0.12 tolerated(0.35) benign(0.026) TCGA-DU-6392-01 1 23520460 23520460 G T HTR1D Missense_Mutation p.L85I 0.08 deleterious(0.01) possibly_damaging(0.832) TCGA-DU-6392-01 1 235377287 235377287 C T ARID4B Silent p.E546E 0.47 TCGA-DU-6392-01 1 235383757 235383757 C T ARID4B Missense_Mutation p.V423I 0.10 tolerated(0.18) benign(0.003) TCGA-DU-6392-01 1 235647671 235647671 G A B3GALNT2 Silent p.N174N 0.36 TCGA-DU-6392-01 1 235826158 235826158 G T LYST 3'UTR 0.14 TCGA-DU-6392-01 1 235827839 235827839 G A LYST Silent p.S3707S 0.49 TCGA-DU-6392-01 1 235922740 235922740 G T LYST Missense_Mutation p.T2138N 0.45 tolerated_low_confidence(0.7) benign(0) TCGA-DU-6392-01 1 235926125 235926125 G A LYST Missense_Mutation p.R2050W 0.33 deleterious_low_confidence(0) benign(0.216) TCGA-DU-6392-01 1 235929518 235929518 T C LYST Silent p.K1994K 0.49 TCGA-DU-6392-01 1 235969400 235969400 C A LYST Missense_Mutation p.K1012N 0.38 deleterious_low_confidence(0.03) benign(0.125) TCGA-DU-6392-01 1 235969487 235969487 C T LYST Silent p.R983R 0.31 TCGA-DU-6392-01 1 235972444 235972444 C T LYST Silent p.L558L 0.13 TCGA-DU-6392-01 1 235973133 235973133 G A LYST Nonsense_Mutation p.R329* 0.49 TCGA-DU-6392-01 1 236143157 236143157 G A NID1 Silent p.S1158S 0.31 TCGA-DU-6392-01 1 236175274 236175274 G A NID1 Missense_Mutation p.T825M 0.50 tolerated(0.19) benign(0.149) TCGA-DU-6392-01 1 236205240 236205240 C A NID1 Missense_Mutation p.D369Y 0.08 tolerated(0.08) possibly_damaging(0.482) TCGA-DU-6392-01 1 236389961 236389961 T G ERO1LB Missense_Mutation p.N264T 0.38 deleterious(0.04) benign(0.016) TCGA-DU-6392-01 1 23650213 23650213 T C HNRNPR Missense_Mutation p.K171E 0.10 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 1 236702282 236702282 A G LGALS8 Missense_Mutation p.T80A 0.59 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 1 236702296 236702296 A G LGALS8 Silent p.E84E 0.54 TCGA-DU-6392-01 1 236722336 236722336 T C HEATR1 Missense_Mutation p.N1624D 0.44 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 1 236738000 236738000 G A HEATR1 Silent p.Y1096Y 0.52 TCGA-DU-6392-01 1 236881218 236881218 G A ACTN2 Missense_Mutation p.E63K 0.39 deleterious(0.04) possibly_damaging(0.833) TCGA-DU-6392-01 1 236902708 236902708 G A ACTN2 Missense_Mutation p.R328Q 0.08 tolerated(0.09) possibly_damaging(0.453) TCGA-DU-6392-01 1 236912466 236912466 G A ACTN2 Missense_Mutation p.E520K 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-DU-6392-01 1 236914862 236914862 G T ACTN2 Missense_Mutation p.E583D 0.13 tolerated(0.21) benign(0.027) TCGA-DU-6392-01 1 236917269 236917269 G A ACTN2 Missense_Mutation p.R621H 0.29 deleterious(0.02) probably_damaging(0.984) TCGA-DU-6392-01 1 236924466 236924466 C T ACTN2 Missense_Mutation p.S840F 0.46 deleterious(0) possibly_damaging(0.723) TCGA-DU-6392-01 1 236966835 236966835 G A MTR Missense_Mutation p.E48K 0.48 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 1 237001797 237001797 C T MTR Silent p.S471S 0.28 TCGA-DU-6392-01 1 237023145 237023145 G T MTR Nonsense_Mutation p.G656* 0.37 TCGA-DU-6392-01 1 237057785 237057785 C T MTR Silent p.S1111S 0.26 TCGA-DU-6392-01 1 237632393 237632393 G A RYR2 Silent p.A538A 0.26 TCGA-DU-6392-01 1 237732539 237732539 T C RYR2 Missense_Mutation p.M1173T 0.23 possibly_damaging(0.87) TCGA-DU-6392-01 1 237777567 237777567 C A RYR2 Silent p.S1713S 0.11 TCGA-DU-6392-01 1 237872343 237872343 G A RYR2 Missense_Mutation p.A3363T 0.41 benign(0.011) TCGA-DU-6392-01 1 237942006 237942006 G A RYR2 Missense_Mutation p.R3939K 0.41 probably_damaging(0.973) TCGA-DU-6392-01 1 238050822 238050822 G T ZP4 Missense_Mutation p.A198D 0.20 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 1 238090658 238090658 G A RP11-193H5.1 RNA 0.28 TCGA-DU-6392-01 1 23885873 23885873 G A ID3 Silent p.C15C 0.51 TCGA-DU-6392-01 1 23954408 23954408 C A MDS2 5'UTR 0.35 TCGA-DU-6392-01 1 240370352 240370352 C A FMN2 Missense_Mutation p.S747Y 0.19 unknown(0) TCGA-DU-6392-01 1 24078310 24078310 G A TCEB3 Missense_Mutation p.M431I 0.38 deleterious(0.03) benign(0.13) TCGA-DU-6392-01 1 240966253 240966253 C T RGS7 Missense_Mutation p.R437H 0.38 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 1 240979635 240979635 T A RGS7 Missense_Mutation p.E255D 0.35 tolerated(0.55) benign(0.155) TCGA-DU-6392-01 1 2411398 2411398 G A PLCH2 Missense_Mutation p.R139H 0.43 deleterious(0.03) probably_damaging(0.988) TCGA-DU-6392-01 1 241262035 241262035 C A RGS7 Missense_Mutation p.D36Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 241667422 241667422 C T FH Missense_Mutation p.R343Q 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 241718931 241718931 G T KMO Missense_Mutation p.R111I 0.12 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 1 241725562 241725562 G A KMO Missense_Mutation p.R182H 0.43 tolerated(0.08) probably_damaging(0.973) TCGA-DU-6392-01 1 241797251 241797251 G T CHML Missense_Mutation p.F606L 0.16 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 241798768 241798768 C T CHML Missense_Mutation p.A101T 0.13 tolerated(0.15) benign(0.001) TCGA-DU-6392-01 1 2418794 2418794 G A PLCH2 Missense_Mutation p.A338T 0.36 tolerated(0.05) possibly_damaging(0.841) TCGA-DU-6392-01 1 241904950 241904950 C A WDR64 Missense_Mutation p.S475Y 0.26 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 1 24201569 24201569 G T CNR2 Missense_Mutation p.S180Y 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 24201629 24201629 A C CNR2 Missense_Mutation p.L160R 0.20 deleterious(0.01) possibly_damaging(0.664) TCGA-DU-6392-01 1 243303270 243303270 A C CEP170 Missense_Mutation p.I1400S 0.11 tolerated(0.17) possibly_damaging(0.627) TCGA-DU-6392-01 1 243327874 243327874 T C CEP170 Missense_Mutation p.T1130A 0.09 tolerated(0.09) probably_damaging(0.997) TCGA-DU-6392-01 1 243327909 243327909 T G CEP170 Missense_Mutation p.D1118A 0.13 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 243504455 243504455 C T SDCCAG8 Missense_Mutation p.R446W 0.25 deleterious(0.01) possibly_damaging(0.84) TCGA-DU-6392-01 1 243663120 243663120 C T SDCCAG8 3'UTR 0.34 TCGA-DU-6392-01 1 244218516 244218516 C T ZBTB18 Silent p.C480C 0.35 TCGA-DU-6392-01 1 24454689 24454689 G A IL22RA1 Silent p.C204C 0.49 TCGA-DU-6392-01 1 244756882 244756882 T C C1orf101 Splice_Site p.X768_splice 0.54 TCGA-DU-6392-01 1 245018277 245018277 C A HNRNPU Missense_Mutation p.G808C 0.08 deleterious(0) unknown(0) TCGA-DU-6392-01 1 2452612 2452612 G T PANK4 Missense_Mutation p.T117N 0.11 tolerated(0.7) benign(0.16) TCGA-DU-6392-01 1 245530312 245530312 C T KIF26B Silent p.Y214Y 0.39 TCGA-DU-6392-01 1 245847663 245847663 C T KIF26B Missense_Mutation p.S796L 0.27 deleterious(0) unknown(0) TCGA-DU-6392-01 1 245866042 245866042 C T KIF26B 3'UTR 0.50 TCGA-DU-6392-01 1 24657946 24657946 C T GRHL3 Silent p.D16D 0.28 TCGA-DU-6392-01 1 246729428 246729428 C A TFB2M Missense_Mutation p.V5L 0.45 tolerated(0.47) benign(0.007) TCGA-DU-6392-01 1 24673118 24673118 C T GRHL3 Silent p.G510G 0.24 TCGA-DU-6392-01 1 246805289 246805289 T C CNST Missense_Mutation p.L296S 0.22 deleterious(0.03) benign(0.109) TCGA-DU-6392-01 1 246829045 246829045 C T CNST Silent p.C672C 0.36 TCGA-DU-6392-01 1 246923291 246923291 C T SCCPDH Silent p.G282G 0.48 TCGA-DU-6392-01 1 247013360 247013360 G T AHCTF1 Missense_Mutation p.S1992Y 0.47 tolerated(0.2) benign(0.009) TCGA-DU-6392-01 1 247030630 247030630 G T AHCTF1 Missense_Mutation p.P1097H 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-DU-6392-01 1 247053278 247053278 G A AHCTF1 Missense_Mutation p.R721C 0.42 deleterious(0.03) benign(0.294) TCGA-DU-6392-01 1 247151450 247151450 G A ZNF695 Missense_Mutation p.R123C 0.10 deleterious(0.02) benign(0.353) TCGA-DU-6392-01 1 247163244 247163244 C T ZNF695 Missense_Mutation p.D46N 0.28 tolerated(0.48) benign(0.135) TCGA-DU-6392-01 1 247263863 247263863 C T ZNF669 Missense_Mutation p.S403N 0.35 tolerated(0.09) benign(0.002) TCGA-DU-6392-01 1 247463865 247463865 G T ZNF496 Missense_Mutation p.L574M 0.38 tolerated(0.06) benign(0.301) TCGA-DU-6392-01 1 247492096 247492096 G T ZNF496 Missense_Mutation p.P155T 0.06 deleterious(0.05) benign(0.282) TCGA-DU-6392-01 1 247492846 247492846 G A ZNF496 Missense_Mutation p.P12L 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 1 247695568 247695568 G A OR2C3 Silent p.L82L 0.55 TCGA-DU-6392-01 1 247737603 247737603 A G GCSAML Silent p.E109E 0.08 TCGA-DU-6392-01 1 247751701 247751701 G T OR2G2 Missense_Mutation p.G14C 0.46 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 1 247751882 247751882 G A OR2G2 Missense_Mutation p.R74H 0.30 deleterious(0) benign(0.012) TCGA-DU-6392-01 1 247752103 247752103 G A OR2G2 Missense_Mutation p.A148T 0.14 tolerated(0.06) benign(0.277) TCGA-DU-6392-01 1 247836050 247836050 G T OR13G1 Silent p.L98L 0.43 TCGA-DU-6392-01 1 247836181 247836181 G A OR13G1 Missense_Mutation p.P55S 0.57 deleterious(0.01) possibly_damaging(0.78) TCGA-DU-6392-01 1 247875949 247875949 G T OR6F1 Missense_Mutation p.L37I 0.38 deleterious(0.03) possibly_damaging(0.849) TCGA-DU-6392-01 1 247978154 247978154 G A OR14A16 Missense_Mutation p.A293V 0.33 deleterious(0.03) possibly_damaging(0.63) TCGA-DU-6392-01 1 248059271 248059271 A T OR2W3 Missense_Mutation p.K128M 0.37 deleterious(0.01) possibly_damaging(0.873) TCGA-DU-6392-01 1 248059544 248059544 G T OR2W3 Missense_Mutation p.S219I 0.43 deleterious(0.01) benign(0.148) TCGA-DU-6392-01 1 248202053 248202053 G A OR2L2 Missense_Mutation p.A162T 0.08 tolerated(0.61) benign(0.019) TCGA-DU-6392-01 1 248308611 248308611 G T OR2M5 Missense_Mutation p.Q54H 0.06 tolerated(0.2) benign(0.027) TCGA-DU-6392-01 1 248308747 248308747 C T OR2M5 Nonsense_Mutation p.Q100* 0.05 TCGA-DU-6392-01 1 248366786 248366786 A C OR2M3 Missense_Mutation p.K139N 0.12 deleterious(0.02) benign(0.163) TCGA-DU-6392-01 1 248685655 248685655 G T OR2G6 Missense_Mutation p.K236N 0.14 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 248737166 248737166 C T OR2T34 Missense_Mutation p.R298H 0.38 deleterious(0) benign(0.01) TCGA-DU-6392-01 1 248756344 248756344 G T OR2T10 Silent p.S242S 0.32 TCGA-DU-6392-01 1 248756983 248756983 C T OR2T10 Silent p.L29L 0.12 TCGA-DU-6392-01 1 248789612 248789612 G A OR2T11 Missense_Mutation p.A273V 0.42 tolerated(0.59) probably_damaging(0.999) TCGA-DU-6392-01 1 248789891 248789891 G A OR2T11 Missense_Mutation p.A180V 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 1 248789941 248789941 G A OR2T11 Silent p.V163V 0.07 TCGA-DU-6392-01 1 248845564 248845564 C T OR14I1 Silent p.E14E 0.50 TCGA-DU-6392-01 1 249151477 249151477 C T ZNF692 Missense_Mutation p.R149Q 0.45 tolerated(0.47) benign(0.001) TCGA-DU-6392-01 1 249208041 249208041 G T PGBD2 5'UTR 0.33 TCGA-DU-6392-01 1 249211110 249211110 G T PGBD2 Missense_Mutation p.Q109H 0.14 tolerated(0.09) benign(0.289) TCGA-DU-6392-01 1 249211828 249211828 T - PGBD2 Frame_Shift_Del p.F350Lfs*10 0.13 TCGA-DU-6392-01 1 249212402 249212402 G A PGBD2 Missense_Mutation p.R540Q 0.39 tolerated(0.11) benign(0.154) TCGA-DU-6392-01 1 24978975 24978975 C A SRRM1 Missense_Mutation p.P259H 0.14 unknown(0) TCGA-DU-6392-01 1 2519811 2519811 G A FAM213B Intron 0.45 TCGA-DU-6392-01 1 2522446 2522446 G A MMEL1 Nonsense_Mutation p.R775* 0.50 TCGA-DU-6392-01 1 25549895 25549895 C T SYF2 Silent p.R198R 0.39 TCGA-DU-6392-01 1 25573046 25573046 G A C1orf63 Nonsense_Mutation p.Q137* 0.16 TCGA-DU-6392-01 1 25573443 25573443 G A C1orf63 Silent p.Y4Y 0.43 TCGA-DU-6392-01 1 25599125 25599125 T - RHD Frame_Shift_Del p.F31Lfs*8 0.21 TCGA-DU-6392-01 1 25611236 25611236 C A RHD Silent p.V107V 0.21 TCGA-DU-6392-01 1 26109097 26109097 A G MAN1C1 Missense_Mutation p.T558A 0.43 tolerated(0.09) possibly_damaging(0.579) TCGA-DU-6392-01 1 26189404 26189404 C T PAQR7 Silent p.T309T 0.31 TCGA-DU-6392-01 1 26189632 26189632 C T PAQR7 Silent p.T233T 0.45 TCGA-DU-6392-01 1 26190160 26190160 G A PAQR7 Silent p.T57T 0.30 TCGA-DU-6392-01 1 26227502 26227502 A G STMN1 Intron 0.06 TCGA-DU-6392-01 1 26310982 26310982 G A PAFAH2 Missense_Mutation p.R127C 0.47 deleterious(0.05) possibly_damaging(0.888) TCGA-DU-6392-01 1 26349472 26349472 G A EXTL1 Missense_Mutation p.R112H 0.40 tolerated(0.27) benign(0.049) TCGA-DU-6392-01 1 26357053 26357053 C A EXTL1 Silent p.S356S 0.11 TCGA-DU-6392-01 1 26383727 26383727 C A TRIM63 Missense_Mutation p.A316S 0.44 tolerated(0.2) benign(0.004) TCGA-DU-6392-01 1 26506867 26506867 C A CNKSR1 Intron 0.34 TCGA-DU-6392-01 1 26582026 26582026 G A CEP85 Silent p.S191S 0.37 TCGA-DU-6392-01 1 26597551 26597551 G T CEP85 Nonsense_Mutation p.E566* 0.42 TCGA-DU-6392-01 1 26611954 26611954 C T UBXN11 Splice_Site p.X284_splice 0.28 TCGA-DU-6392-01 1 26663841 26663841 C T AIM1L Missense_Mutation p.R351Q 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 1 26751871 26751871 G T LIN28A Missense_Mutation p.K102N 0.08 deleterious(0) probably_damaging(0.97) TCGA-DU-6392-01 1 26759394 26759394 G A DHDDS 5'UTR 0.12 TCGA-DU-6392-01 1 26888068 26888068 C A RPS6KA1 Missense_Mutation p.L511M 0.11 tolerated(0.07) possibly_damaging(0.633) TCGA-DU-6392-01 1 26900689 26900689 G A RPS6KA1 Silent p.L744L 0.11 TCGA-DU-6392-01 1 27056262 27056262 C T ARID1A Nonsense_Mutation p.Q420* 0.40 TCGA-DU-6392-01 1 27105658 27105658 G T ARID1A Missense_Mutation p.A1757S 0.37 benign(0.01) TCGA-DU-6392-01 1 27106327 27106327 C T ARID1A Missense_Mutation p.R1980C 0.37 probably_damaging(0.999) TCGA-DU-6392-01 1 27177723 27177723 G A ZDHHC18 Splice_Site p.X312_splice 0.39 TCGA-DU-6392-01 1 27189909 27189909 G A SFN Missense_Mutation p.S69N 0.36 tolerated_low_confidence(0.1) benign(0.003) TCGA-DU-6392-01 1 27206198 27206198 C A GPN2 Missense_Mutation p.Q301H 0.38 tolerated(0.06) benign(0.192) TCGA-DU-6392-01 1 27217689 27217689 C A GPATCH3 Missense_Mutation p.G464W 0.24 deleterious(0.02) possibly_damaging(0.812) TCGA-DU-6392-01 1 27223972 27223972 G A GPATCH3 Silent p.Y232Y 0.12 TCGA-DU-6392-01 1 27269155 27269155 C T NUDC Missense_Mutation p.T145I 0.36 tolerated(0.19) benign(0.025) TCGA-DU-6392-01 1 27269425 27269425 C T NUDC Missense_Mutation p.R204W 0.19 deleterious(0.03) probably_damaging(0.965) TCGA-DU-6392-01 1 27333309 27333309 C T FAM46B Missense_Mutation p.R135H 0.40 tolerated(0.2) benign(0.002) TCGA-DU-6392-01 1 27426801 27426801 C T SLC9A1 Silent p.Q815Q 0.39 TCGA-DU-6392-01 1 27426981 27426981 G A SLC9A1 Silent p.D755D 0.38 TCGA-DU-6392-01 1 27589652 27589652 G A WDTC1 Missense_Mutation p.A20T 0.37 tolerated(0.54) benign(0.006) TCGA-DU-6392-01 1 27674031 27674031 C T SYTL1 Missense_Mutation p.A104V 0.45 deleterious(0) probably_damaging(0.963) TCGA-DU-6392-01 1 27675609 27675609 T C SYTL1 Silent p.A166A 0.11 TCGA-DU-6392-01 1 27721367 27721367 C T GPR3 3'UTR 0.12 TCGA-DU-6392-01 1 27875328 27875328 C T AHDC1 Missense_Mutation p.R1100Q 0.37 deleterious(0.01) benign(0.417) TCGA-DU-6392-01 1 27876321 27876321 G A AHDC1 Missense_Mutation p.A769V 0.11 deleterious(0.05) possibly_damaging(0.682) TCGA-DU-6392-01 1 27876628 27876628 G A AHDC1 Missense_Mutation p.R667W 0.46 deleterious(0) possibly_damaging(0.835) TCGA-DU-6392-01 1 28161023 28161024 - T PPP1R8 Intron 0.25 TCGA-DU-6392-01 1 28209217 28209217 A G THEMIS2 Missense_Mutation p.D461G 0.30 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 1 28290024 28290024 C T XKR8 Missense_Mutation p.R104W 0.31 tolerated(0.13) benign(0.082) TCGA-DU-6392-01 1 28564459 28564459 G A ATPIF1 Silent p.Q97Q 0.43 TCGA-DU-6392-01 1 28599172 28599172 G A SESN2 Silent p.S206S 0.43 TCGA-DU-6392-01 1 28660946 28660946 G T MED18 Missense_Mutation p.S31I 0.10 tolerated(0.39) benign(0.243) TCGA-DU-6392-01 1 28793148 28793148 C T PHACTR4 Missense_Mutation p.P241L 0.36 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 1 28818246 28818246 G A PHACTR4 Missense_Mutation p.D665N 0.40 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 1 29185541 29185541 G A OPRD1 Silent p.T101T 0.46 TCGA-DU-6392-01 1 29344862 29344862 C A EPB41 Silent p.L344L 0.08 TCGA-DU-6392-01 1 2938559 2938559 C T ACTRT2 Silent p.S103S 0.39 TCGA-DU-6392-01 1 2938692 2938692 G A ACTRT2 Missense_Mutation p.A148T 0.37 deleterious(0.05) possibly_damaging(0.7) TCGA-DU-6392-01 1 29475269 29475269 G A SRSF4 Nonsense_Mutation p.R380* 0.30 TCGA-DU-6392-01 1 29528491 29528491 C A MECR Missense_Mutation p.E240D 0.07 tolerated(0.12) benign(0.002) TCGA-DU-6392-01 1 29585240 29585240 G A PTPRU Nonsense_Mutation p.W143* 0.45 TCGA-DU-6392-01 1 29606579 29606579 G A PTPRU Silent p.P598P 0.35 TCGA-DU-6392-01 1 29644280 29644280 G A PTPRU Silent p.P1188P 0.50 TCGA-DU-6392-01 1 3102694 3102694 G A PRDM16 Missense_Mutation p.G15S 0.33 tolerated_low_confidence(0.37) benign(0.014) TCGA-DU-6392-01 1 31349520 31349520 C T SDC3 Missense_Mutation p.S250N 0.44 tolerated(0.25) unknown(0) TCGA-DU-6392-01 1 31454233 31454233 G A PUM1 Missense_Mutation p.A393V 0.41 deleterious_low_confidence(0.01) benign(0.242) TCGA-DU-6392-01 1 31467908 31467908 C A PUM1 Missense_Mutation p.D294Y 0.07 tolerated(0.07) probably_damaging(0.935) TCGA-DU-6392-01 1 31899543 31899543 C T SERINC2 Missense_Mutation p.A227V 0.40 tolerated(0.88) benign(0.004) TCGA-DU-6392-01 1 32050780 32050780 T C TINAGL1 Missense_Mutation p.S296P 0.39 tolerated(0.33) benign(0.005) TCGA-DU-6392-01 1 32119490 32119490 C T COL16A1 Silent p.R1504R 0.33 TCGA-DU-6392-01 1 32127979 32127979 C T COL16A1 Missense_Mutation p.G1213S 0.21 unknown(0) TCGA-DU-6392-01 1 32157670 32157670 T C COL16A1 Splice_Site p.X399_splice 0.33 TCGA-DU-6392-01 1 32203081 32203081 G A BAI2 Silent p.I976I 0.33 TCGA-DU-6392-01 1 32259438 32259438 T C SPOCD1 Missense_Mutation p.N815S 0.39 tolerated(0.77) benign(0.01) TCGA-DU-6392-01 1 32688215 32688215 C T EIF3I Missense_Mutation p.T27I 0.38 deleterious(0) possibly_damaging(0.903) TCGA-DU-6392-01 1 32713256 32713256 C T FAM167B Silent p.S78S 0.32 TCGA-DU-6392-01 1 32800436 32800436 G T MARCKSL1 Missense_Mutation p.S117Y 0.36 deleterious(0) probably_damaging(0.951) TCGA-DU-6392-01 1 32841937 32841937 G A BSDC1 Missense_Mutation p.A378V 0.41 tolerated(0.45) benign(0.001) TCGA-DU-6392-01 1 33133834 33133834 G T RBBP4 Missense_Mutation p.G107C 0.23 deleterious(0.03) benign(0.308) TCGA-DU-6392-01 1 33145306 33145306 G T RBBP4 Nonstop_Mutation p.*426Yext*7 0.38 TCGA-DU-6392-01 1 3322124 3322124 C T PRDM16 Silent p.H366H 0.37 TCGA-DU-6392-01 1 33235702 33235702 C T KIAA1522 Missense_Mutation p.R308W 0.33 deleterious(0.01) unknown(0) TCGA-DU-6392-01 1 33236827 33236827 G T KIAA1522 Missense_Mutation p.A683S 0.30 tolerated_low_confidence(0.12) unknown(0) TCGA-DU-6392-01 1 33237550 33237550 C T KIAA1522 Missense_Mutation p.P924S 0.36 tolerated(0.43) benign(0.348) TCGA-DU-6392-01 1 33246731 33246731 C T YARS Missense_Mutation p.G353D 0.37 tolerated(0.18) benign(0.051) TCGA-DU-6392-01 1 33292324 33292324 T C S100PBP Silent p.N208N 0.08 TCGA-DU-6392-01 1 33333375 33333375 C T FNDC5 Missense_Mutation p.V85M 0.21 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 33354871 33354871 C T HPCA Silent p.I124I 0.26 TCGA-DU-6392-01 1 33360916 33360916 C T TMEM54 Missense_Mutation p.S195N 0.33 tolerated(0.36) benign(0.015) TCGA-DU-6392-01 1 33549655 33549655 T C ADC Missense_Mutation p.V69A 0.09 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 1 33612935 33612935 T C TRIM62 Missense_Mutation p.Q424R 0.45 tolerated(0.22) benign(0.047) TCGA-DU-6392-01 1 33646764 33646764 C T TRIM62 Silent p.A90A 0.44 TCGA-DU-6392-01 1 33799704 33799704 G A PHC2 Missense_Mutation p.A582V 0.44 deleterious(0) benign(0.168) TCGA-DU-6392-01 1 3395175 3395175 G A ARHGEF16 Missense_Mutation p.A605T 0.43 tolerated(0.56) possibly_damaging(0.608) TCGA-DU-6392-01 1 33960018 33960018 G T ZSCAN20 Nonsense_Mutation p.E692* 0.09 TCGA-DU-6392-01 1 33960239 33960239 C A ZSCAN20 Silent p.P765P 0.33 TCGA-DU-6392-01 1 34042963 34042963 G A CSMD2 Silent p.S2505S 0.34 TCGA-DU-6392-01 1 34052140 34052140 A G CSMD2 Missense_Mutation p.Y2341H 0.43 tolerated(1) benign(0.002) TCGA-DU-6392-01 1 34052210 34052210 G A CSMD2 Silent p.I2317I 0.35 TCGA-DU-6392-01 1 34083159 34083159 G A CSMD2 Silent p.G1922G 0.34 TCGA-DU-6392-01 1 34090742 34090742 G A CSMD2 Silent p.S1763S 0.36 TCGA-DU-6392-01 1 34180325 34180325 G A CSMD2 Missense_Mutation p.R1050W 0.30 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 1 34209090 34209090 C T CSMD2 Missense_Mutation p.R615H 0.51 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 1 3428618 3428618 C T MEGF6 Missense_Mutation p.V310M 0.44 deleterious(0.02) benign(0.298) TCGA-DU-6392-01 1 34329750 34329750 C A HMGB4 5'UTR 0.28 TCGA-DU-6392-01 1 34330140 34330140 G A HMGB4 Silent p.P116P 0.38 TCGA-DU-6392-01 1 34663184 34663184 C T C1orf94 Missense_Mutation p.R227C 0.29 deleterious(0.04) benign(0.001) TCGA-DU-6392-01 1 34684349 34684349 G A C1orf94 Missense_Mutation p.G595D 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 1 35260154 35260154 C T GJA4 Missense_Mutation p.R114W 0.35 deleterious(0.01) possibly_damaging(0.724) TCGA-DU-6392-01 1 35320768 35320768 C A SMIM12 3'UTR 0.09 TCGA-DU-6392-01 1 35321098 35321098 C T SMIM12 3'UTR 0.40 TCGA-DU-6392-01 1 35370053 35370053 C T DLGAP3 Missense_Mutation p.R311H 0.46 deleterious(0.01) possibly_damaging(0.474) TCGA-DU-6392-01 1 3545130 3545130 T C TPRG1L Missense_Mutation p.L261P 0.37 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 1 35452668 35452668 G A ZMYM6 3'UTR 0.33 TCGA-DU-6392-01 1 35457900 35457900 T C ZMYM6 Missense_Mutation p.K694R 0.09 tolerated(0.32) benign(0.006) TCGA-DU-6392-01 1 35457973 35457973 C A ZMYM6 Missense_Mutation p.D670Y 0.41 deleterious(0) benign(0.316) TCGA-DU-6392-01 1 3548792 3548792 G T WRAP73 Missense_Mutation p.L345M 0.39 tolerated(0.08) benign(0.391) TCGA-DU-6392-01 1 3555383 3555383 G A WRAP73 Missense_Mutation p.R115W 0.50 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 1 35650064 35650064 C T SFPQ Missense_Mutation p.R706Q 0.29 deleterious_low_confidence(0.04) benign(0.001) TCGA-DU-6392-01 1 35654958 35654958 C T SFPQ Missense_Mutation p.A481T 0.35 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 1 35847203 35847203 C T ZMYM4 Silent p.C471C 0.46 TCGA-DU-6392-01 1 35857931 35857931 G T ZMYM4 Silent p.V902V 0.10 TCGA-DU-6392-01 1 36026482 36026482 C A NCDN Missense_Mutation p.L244M 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 36028080 36028080 C T NCDN Missense_Mutation p.R411C 0.41 deleterious(0) possibly_damaging(0.848) TCGA-DU-6392-01 1 36028226 36028226 C T NCDN Silent p.D459D 0.43 TCGA-DU-6392-01 1 36102014 36102014 C A PSMB2 Missense_Mutation p.K37N 0.35 tolerated(0.05) possibly_damaging(0.847) TCGA-DU-6392-01 1 36205109 36205109 C A CLSPN Missense_Mutation p.E1055D 0.08 tolerated(0.09) possibly_damaging(0.728) TCGA-DU-6392-01 1 36214109 36214109 T C CLSPN Missense_Mutation p.N790S 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-DU-6392-01 1 36299618 36299618 C T AGO4 Silent p.I469I 0.44 TCGA-DU-6392-01 1 36354031 36354031 C T AGO1 Missense_Mutation p.A10V 0.46 tolerated(0.12) benign(0.013) TCGA-DU-6392-01 1 36358155 36358155 C T AGO1 Intron 0.54 TCGA-DU-6392-01 1 36367872 36367872 T C AGO1 Missense_Mutation p.I444T 0.39 tolerated(0.4) benign(0.041) TCGA-DU-6392-01 1 36474597 36474597 C A AGO3 Silent p.P327P 0.35 TCGA-DU-6392-01 1 36558763 36558763 C A ADPRHL2 Missense_Mutation p.P290T 0.12 deleterious(0.02) possibly_damaging(0.561) TCGA-DU-6392-01 1 3662291 3662291 G T TP73-AS1 RNA 0.50 TCGA-DU-6392-01 1 3662560 3662560 A C TP73-AS1 RNA 0.10 TCGA-DU-6392-01 1 36752440 36752440 G A THRAP3 Silent p.E203E 0.38 TCGA-DU-6392-01 1 36752451 36752451 C A THRAP3 Missense_Mutation p.S207Y 0.10 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DU-6392-01 1 36762305 36762305 C T THRAP3 Missense_Mutation p.S746F 0.29 tolerated(0.1) probably_damaging(0.983) TCGA-DU-6392-01 1 36769414 36769414 C T THRAP3 Silent p.G888G 0.40 TCGA-DU-6392-01 1 36786754 36786754 C T SH3D21 3'UTR 0.38 TCGA-DU-6392-01 1 36788090 36788090 C T EVA1B Missense_Mutation p.A102T 0.23 tolerated(0.7) benign(0) TCGA-DU-6392-01 1 36814358 36814358 C T STK40 Missense_Mutation p.D228N 0.21 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 1 3703680 3703680 G A LRRC47 Silent p.G270G 0.38 TCGA-DU-6392-01 1 3703769 3703769 G A LRRC47 Missense_Mutation p.R241C 0.53 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 37271833 37271833 G A GRIK3 Missense_Mutation p.A729V 0.30 tolerated(1) benign(0.001) TCGA-DU-6392-01 1 37356573 37356573 G T GRIK3 Silent p.T80T 0.40 TCGA-DU-6392-01 1 3782428 3782428 G A DFFB Silent p.G98G 0.41 TCGA-DU-6392-01 1 37941142 37941143 - A ZC3H12A Frame_Shift_Ins p.T16Nfs*8 0.31 TCGA-DU-6392-01 1 38048423 38048423 T C GNL2 Missense_Mutation p.I251V 0.11 tolerated(0.23) benign(0.088) TCGA-DU-6392-01 1 38082240 38082240 C T RSPO1 Missense_Mutation p.D68N 0.39 tolerated(0.1) probably_damaging(0.936) TCGA-DU-6392-01 1 38184381 38184381 G A EPHA10 Missense_Mutation p.A955V 0.37 tolerated(0.21) benign(0.004) TCGA-DU-6392-01 1 38265634 38265634 G T MANEAL Missense_Mutation p.R378M 0.12 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 38272585 38272585 G A YRDC Missense_Mutation p.P190S 0.11 deleterious(0) probably_damaging(0.967) TCGA-DU-6392-01 1 38343867 38343867 T C INPP5B Missense_Mutation p.D557G 0.40 tolerated(0.11) possibly_damaging(0.651) TCGA-DU-6392-01 1 38355275 38355275 G A INPP5B Missense_Mutation p.H251Y 0.32 tolerated(0.77) benign(0.003) TCGA-DU-6392-01 1 39321445 39321445 C A RRAGC Missense_Mutation p.Q192H 0.19 deleterious(0.01) benign(0.357) TCGA-DU-6392-01 1 39340514 39340514 C T GJA9 Silent p.P419P 0.32 TCGA-DU-6392-01 1 39763312 39763312 G A MACF1 Silent p.E797E 0.33 TCGA-DU-6392-01 1 39763358 39763358 T C MACF1 Missense_Mutation p.Y813H 0.34 probably_damaging(0.94) TCGA-DU-6392-01 1 39835840 39835840 G A MACF1 Silent p.K2297K 0.11 TCGA-DU-6392-01 1 39851175 39851175 C A MACF1 Missense_Mutation p.L2578I 0.29 possibly_damaging(0.603) TCGA-DU-6392-01 1 39876290 39876290 G T KIAA0754 5'UTR 0.12 TCGA-DU-6392-01 1 39893657 39893657 C A MACF1 Missense_Mutation p.H3439N 0.17 benign(0.273) TCGA-DU-6392-01 1 39895603 39895603 C T MACF1 Missense_Mutation p.R3603W 0.31 probably_damaging(0.992) TCGA-DU-6392-01 1 40007451 40007451 C T PPIEL RNA 0.50 TCGA-DU-6392-01 1 40011472 40011472 C A PPIEL RNA 0.43 TCGA-DU-6392-01 1 40035600 40035600 A G PABPC4 Missense_Mutation p.V193A 0.43 deleterious(0.03) possibly_damaging(0.609) TCGA-DU-6392-01 1 40309783 40309783 G A TRIT1 Silent p.R408R 0.27 TCGA-DU-6392-01 1 40422876 40422876 C A MFSD2A Missense_Mutation p.L71I 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 40432323 40432323 C A MFSD2A Silent p.I268I 0.25 TCGA-DU-6392-01 1 40777351 40777351 C A COL9A2 Nonsense_Mutation p.G152* 0.10 TCGA-DU-6392-01 1 40874359 40874359 G A SMAP2 Missense_Mutation p.R91Q 0.43 tolerated(0.34) possibly_damaging(0.668) TCGA-DU-6392-01 1 40881994 40881994 G A SMAP2 Silent p.T276T 0.35 TCGA-DU-6392-01 1 40954849 40954849 G T ZFP69 Missense_Mutation p.E103D 0.13 tolerated(0.83) benign(0.133) TCGA-DU-6392-01 1 41288056 41288056 G T KCNQ4 Missense_Mutation p.S371I 0.27 tolerated(0.05) probably_damaging(0.983) TCGA-DU-6392-01 1 41303411 41303411 C T KCNQ4 Missense_Mutation p.A607V 0.73 tolerated(0.27) benign(0.007) TCGA-DU-6392-01 1 41579057 41579057 G A SCMH1 Nonsense_Mutation p.R205* 0.50 TCGA-DU-6392-01 1 41976860 41976860 G T HIVEP3 Silent p.L2161L 0.09 TCGA-DU-6392-01 1 42047197 42047197 G A HIVEP3 Missense_Mutation p.A1091V 0.46 benign(0.004) TCGA-DU-6392-01 1 42049277 42049277 C T HIVEP3 Missense_Mutation p.E398K 0.37 probably_damaging(0.994) TCGA-DU-6392-01 1 43076716 43076716 G A CCDC30 Missense_Mutation p.R484H 0.28 tolerated(0.58) benign(0.001) TCGA-DU-6392-01 1 43204139 43204139 G A CLDN19 Missense_Mutation p.A114V 0.43 tolerated(0.18) benign(0.007) TCGA-DU-6392-01 1 43220608 43220608 T C LEPRE1 Missense_Mutation p.K426R 0.10 tolerated(0.07) probably_damaging(0.917) TCGA-DU-6392-01 1 43224620 43224620 G T LEPRE1 Missense_Mutation p.N281K 0.31 tolerated(0.24) benign(0.027) TCGA-DU-6392-01 1 43224949 43224949 G T LEPRE1 Missense_Mutation p.A244D 0.37 deleterious(0) benign(0.281) TCGA-DU-6392-01 1 43273060 43273060 T A CCDC23 3'UTR 0.42 TCGA-DU-6392-01 1 43392662 43392662 G T SLC2A1 3'UTR 0.11 TCGA-DU-6392-01 1 43630358 43630358 C T EBNA1BP2 Missense_Mutation p.A331T 0.35 tolerated(0.07) benign(0.373) TCGA-DU-6392-01 1 43636428 43636428 T G EBNA1BP2 Missense_Mutation p.K204T 0.34 deleterious(0) possibly_damaging(0.549) TCGA-DU-6392-01 1 43738592 43738592 C T TMEM125 Missense_Mutation p.R67W 0.44 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 1 43748742 43748742 G A C1orf210 Missense_Mutation p.A19V 0.33 deleterious(0.03) benign(0.066) TCGA-DU-6392-01 1 43770805 43770805 G A TIE1 Silent p.T114T 0.22 TCGA-DU-6392-01 1 43777687 43777687 G A TIE1 Silent p.T505T 0.32 TCGA-DU-6392-01 1 43784988 43784988 G A TIE1 Missense_Mutation p.R1002Q 0.41 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 1 43804212 43804212 G T MPL Splice_Site p.X71_splice 0.20 TCGA-DU-6392-01 1 43804304 43804304 C T MPL Missense_Mutation p.R102C 0.28 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 43824890 43824890 G A CDC20 Missense_Mutation p.A2T 0.40 deleterious(0.04) benign(0.158) TCGA-DU-6392-01 1 43825273 43825273 G A CDC20 Silent p.E98E 0.11 TCGA-DU-6392-01 1 43888947 43888947 C A SZT2 Missense_Mutation p.L739I 0.12 tolerated(0.18) possibly_damaging(0.882) TCGA-DU-6392-01 1 43890844 43890844 C A SZT2 Missense_Mutation p.L871I 0.23 tolerated(0.09) possibly_damaging(0.835) TCGA-DU-6392-01 1 43895487 43895487 C T SZT2 Missense_Mutation p.A1370V 0.40 tolerated(0.75) benign(0.017) TCGA-DU-6392-01 1 43902861 43902861 C A SZT2 Missense_Mutation p.S1961R 0.37 deleterious(0.02) benign(0.402) TCGA-DU-6392-01 1 43906238 43906238 G A SZT2 Missense_Mutation p.R2385H 0.39 tolerated(0.19) probably_damaging(0.997) TCGA-DU-6392-01 1 43917949 43917949 C T HYI Missense_Mutation p.R118Q 0.37 tolerated(0.05) benign(0.126) TCGA-DU-6392-01 1 44056724 44056724 C T PTPRF Missense_Mutation p.S344L 0.08 tolerated(0.07) benign(0.15) TCGA-DU-6392-01 1 44121425 44121425 C A KDM4A Missense_Mutation p.A101D 0.39 deleterious(0) possibly_damaging(0.5) TCGA-DU-6392-01 1 44290430 44290430 T G ST3GAL3 Silent p.V94V 0.33 TCGA-DU-6392-01 1 44401310 44401310 G A ARTN 5'UTR 0.50 TCGA-DU-6392-01 1 44415727 44415727 G A IPO13 Silent p.A241A 0.33 TCGA-DU-6392-01 1 44422631 44422631 G A IPO13 Silent p.E418E 0.33 TCGA-DU-6392-01 1 44423124 44423124 C T IPO13 Silent p.D481D 0.25 TCGA-DU-6392-01 1 44437630 44437630 T C DPH2 Silent p.G352G 0.11 TCGA-DU-6392-01 1 44458013 44458013 C T CCDC24 Missense_Mutation p.R86W 0.38 deleterious(0.03) probably_damaging(0.994) TCGA-DU-6392-01 1 44468188 44468188 G A SLC6A9 Missense_Mutation p.A358V 0.40 deleterious(0.04) possibly_damaging(0.826) TCGA-DU-6392-01 1 44476507 44476507 T C SLC6A9 Silent p.K99K 0.32 TCGA-DU-6392-01 1 44687263 44687263 G T ERI3 Silent p.G327G 0.14 TCGA-DU-6392-01 1 44774067 44774067 C T ERI3 Missense_Mutation p.D225N 0.41 tolerated(0.21) benign(0.109) TCGA-DU-6392-01 1 44804807 44804807 C T ERI3 Silent p.A133A 0.08 TCGA-DU-6392-01 1 45120599 45120599 G A TMEM53 Missense_Mutation p.R156W 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 45227592 45227592 C T KIF2C Missense_Mutation p.A563V 0.26 deleterious(0) possibly_damaging(0.895) TCGA-DU-6392-01 1 45270140 45270140 A G PLK3 Missense_Mutation p.D491G 0.27 deleterious(0.02) benign(0.403) TCGA-DU-6392-01 1 45475919 45475919 T C HECTD3 Missense_Mutation p.R193G 0.26 deleterious(0.02) benign(0.002) TCGA-DU-6392-01 1 45478944 45478944 C A UROD Intron 0.31 TCGA-DU-6392-01 1 45501950 45501950 G T ZSWIM5 Missense_Mutation p.P639H 0.26 tolerated(0.14) unknown(0) TCGA-DU-6392-01 1 45807687 45807687 G A TOE1 Missense_Mutation p.E134K 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 45977087 45977087 C T PRDX1 Splice_Site p.X172_splice 0.10 TCGA-DU-6392-01 1 45981480 45981480 C T PRDX1 Splice_Site p.X36_splice 0.47 TCGA-DU-6392-01 1 46032281 46032281 G A AKR1A1 Missense_Mutation p.R42H 0.43 deleterious(0.01) probably_damaging(0.934) TCGA-DU-6392-01 1 46034284 46034284 T C AKR1A1 Missense_Mutation p.V227A 0.38 tolerated(0.53) benign(0.003) TCGA-DU-6392-01 1 46099286 46099286 T C GPBP1L1 Missense_Mutation p.S307G 0.42 tolerated(0.74) benign(0.005) TCGA-DU-6392-01 1 46099832 46099832 C T GPBP1L1 Missense_Mutation p.S274N 0.40 tolerated(0.11) benign(0.002) TCGA-DU-6392-01 1 46295224 46295224 C T MAST2 Nonsense_Mutation p.Q147* 0.09 TCGA-DU-6392-01 1 46738396 46738396 C T RAD54L Missense_Mutation p.P433S 0.46 tolerated(0.67) benign(0.038) TCGA-DU-6392-01 1 46740290 46740290 G A RAD54L Missense_Mutation p.M590I 0.46 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 1 46745251 46745251 G A LRRC41 Missense_Mutation p.R686C 0.34 tolerated(0.08) possibly_damaging(0.835) TCGA-DU-6392-01 1 46751289 46751289 A G LRRC41 Missense_Mutation p.Y414H 0.28 deleterious(0) possibly_damaging(0.607) TCGA-DU-6392-01 1 46751494 46751495 - G LRRC41 Frame_Shift_Ins p.A346Sfs*5 0.25 TCGA-DU-6392-01 1 46764040 46764040 G T LRRC41 Missense_Mutation p.L68I 0.41 tolerated(0.13) probably_damaging(0.978) TCGA-DU-6392-01 1 46774775 46774775 G T UQCRH Missense_Mutation p.E19D 0.41 tolerated(0.09) benign(0.309) TCGA-DU-6392-01 1 46871725 46871725 G T FAAH Missense_Mutation p.K267N 0.35 tolerated(0.44) probably_damaging(0.999) TCGA-DU-6392-01 1 47016788 47016788 A G KNCN Missense_Mutation p.S34P 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.82) TCGA-DU-6392-01 1 47030791 47030791 G T MKNK1 Silent p.I230I 0.15 TCGA-DU-6392-01 1 47075341 47075341 G A MOB3C Missense_Mutation p.R265W 0.17 deleterious(0) probably_damaging(0.913) TCGA-DU-6392-01 1 47080742 47080742 G A MOB3C Missense_Mutation p.R3C 0.34 tolerated_low_confidence(0.35) benign(0) TCGA-DU-6392-01 1 47101574 47101574 G T ATPAF1 Silent p.T310T 0.07 TCGA-DU-6392-01 1 47279658 47279658 A G CYP4B1 Missense_Mutation p.H233R 0.10 tolerated(0.07) probably_damaging(0.999) TCGA-DU-6392-01 1 47283692 47283692 C T CYP4B1 Silent p.P421P 0.32 TCGA-DU-6392-01 1 47333757 47333757 G A CYP4Z2P RNA 0.35 TCGA-DU-6392-01 1 47501531 47501531 G T CYP4X1 Missense_Mutation p.E182D 0.44 tolerated(0.06) benign(0.032) TCGA-DU-6392-01 1 47501745 47501745 G A CYP4X1 Missense_Mutation p.R226H 0.45 deleterious(0.03) benign(0.21) TCGA-DU-6392-01 1 47548008 47548008 C T CYP4Z1 Nonsense_Mutation p.R123* 0.35 TCGA-DU-6392-01 1 47603166 47603166 C A CYP4A22 Silent p.V3V 0.38 TCGA-DU-6392-01 1 47689770 47689770 G A TAL1 Silent p.S149S 0.39 TCGA-DU-6392-01 1 47691486 47691486 G A TAL1 Silent p.S25S 0.33 TCGA-DU-6392-01 1 47717308 47717309 - T STIL Frame_Shift_Ins p.Y1123Ifs*12 0.28 TCGA-DU-6392-01 1 47725975 47725975 G T STIL Missense_Mutation p.N1022K 0.33 tolerated(1) benign(0.001) TCGA-DU-6392-01 1 47767270 47767270 A G STIL Missense_Mutation p.I139T 0.10 tolerated(0.27) benign(0.034) TCGA-DU-6392-01 1 47834233 47834233 C T CMPK1 Silent p.Y88Y 0.32 TCGA-DU-6392-01 1 47842396 47842396 G T CMPK1 Missense_Mutation p.Q222H 0.15 deleterious(0.01) benign(0.001) TCGA-DU-6392-01 1 48697656 48697656 C T SLC5A9 Missense_Mutation p.R269W 0.32 deleterious(0) possibly_damaging(0.846) TCGA-DU-6392-01 1 49224836 49224836 C T BEND5 Missense_Mutation p.V161M 0.36 tolerated_low_confidence(0.47) benign(0.001) TCGA-DU-6392-01 1 50642804 50642804 G T ELAVL4 Missense_Mutation p.K115N 0.12 tolerated(0.4) benign(0.004) TCGA-DU-6392-01 1 51061795 51061795 C T FAF1 Missense_Mutation p.E280K 0.55 tolerated(0.74) benign(0.005) TCGA-DU-6392-01 1 51210375 51210375 G A FAF1 Missense_Mutation p.T147M 0.07 tolerated(0.08) benign(0.346) TCGA-DU-6392-01 1 51435953 51435953 G A CDKN2C Intron 0.21 TCGA-DU-6392-01 1 51787393 51787393 C A TTC39A Missense_Mutation p.R53I 0.30 tolerated(0.39) probably_damaging(0.952) TCGA-DU-6392-01 1 51875340 51875340 T C EPS15 Missense_Mutation p.N381S 0.09 tolerated(0.71) benign(0.005) TCGA-DU-6392-01 1 52343976 52343976 G A NRD1 Silent p.V104V 0.24 TCGA-DU-6392-01 1 52811958 52811958 G A ZFYVE9 3'UTR 0.38 TCGA-DU-6392-01 1 52825168 52825168 C A CC2D1B Missense_Mutation p.Q327H 0.31 deleterious(0) possibly_damaging(0.695) TCGA-DU-6392-01 1 52838824 52838824 A G ORC1 3'UTR 0.27 TCGA-DU-6392-01 1 52847358 52847358 G T ORC1 Missense_Mutation p.L697I 0.38 tolerated(0.25) benign(0.005) TCGA-DU-6392-01 1 52861730 52861730 G A ORC1 Silent p.L237L 0.37 TCGA-DU-6392-01 1 52863359 52863359 G A ORC1 Missense_Mutation p.R134W 0.08 deleterious(0.01) possibly_damaging(0.849) TCGA-DU-6392-01 1 52903911 52903911 C T ZCCHC11 Missense_Mutation p.D1307N 0.42 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 1 52924096 52924096 C A ZCCHC11 Missense_Mutation p.R1116M 0.08 deleterious(0) possibly_damaging(0.817) TCGA-DU-6392-01 1 52981602 52981602 T G ZCCHC11 Missense_Mutation p.E281D 0.29 deleterious(0) probably_damaging(0.911) TCGA-DU-6392-01 1 53122674 53122674 T C FAM159A Missense_Mutation p.S179P 0.07 tolerated_low_confidence(0.92) benign(0) TCGA-DU-6392-01 1 53377521 53377521 G A ECHDC2 Intron 0.43 TCGA-DU-6392-01 1 53416537 53416537 G A SCP2 Missense_Mutation p.A104T 0.37 deleterious(0.01) possibly_damaging(0.774) TCGA-DU-6392-01 1 53459092 53459092 G T SCP2 Intron 0.09 TCGA-DU-6392-01 1 53544532 53544532 T C PODN Silent p.P498P 0.17 TCGA-DU-6392-01 1 53580505 53580505 G A SLC1A7 Missense_Mutation p.A119V 0.59 tolerated(0.08) benign(0.114) TCGA-DU-6392-01 1 53679163 53679163 G A CPT2 Missense_Mutation p.V625I 0.36 tolerated(0.19) benign(0.018) TCGA-DU-6392-01 1 53715167 53715167 G A LRP8 Missense_Mutation p.P913L 0.57 tolerated_low_confidence(1) benign(0) TCGA-DU-6392-01 1 53980441 53980441 G A GLIS1 Silent p.G405G 0.45 TCGA-DU-6392-01 1 54060032 54060032 G T GLIS1 Missense_Mutation p.L182M 0.40 deleterious(0.04) probably_damaging(0.996) TCGA-DU-6392-01 1 54266450 54266450 G A NDC1 Silent p.L380L 0.44 TCGA-DU-6392-01 1 54348857 54348857 C A YIPF1 Nonsense_Mutation p.G42* 0.07 TCGA-DU-6392-01 1 54395798 54395798 G A HSPB11 Missense_Mutation p.T40I 0.39 tolerated(0.62) possibly_damaging(0.858) TCGA-DU-6392-01 1 54518691 54518691 G T TMEM59 Silent p.P57P 0.34 TCGA-DU-6392-01 1 54562164 54562164 C T TCEANC2 3'UTR 0.39 TCGA-DU-6392-01 1 54605592 54605592 G A CDCP2 Silent p.D317D 0.37 TCGA-DU-6392-01 1 54678284 54678284 C A MRPL37 Missense_Mutation p.L315M 0.14 tolerated(1) benign(0.07) TCGA-DU-6392-01 1 54681864 54681864 G A MRPL37 Silent p.T347T 0.29 TCGA-DU-6392-01 1 55065012 55065012 T C ACOT11 Missense_Mutation p.F270L 0.05 tolerated(0.17) probably_damaging(0.951) TCGA-DU-6392-01 1 55119694 55119694 C T MROH7 Silent p.I365I 0.42 TCGA-DU-6392-01 1 55182370 55182370 A T TTC4 Missense_Mutation p.D70V 0.38 deleterious(0) possibly_damaging(0.623) TCGA-DU-6392-01 1 55224353 55224353 G A PARS2 Missense_Mutation p.A161V 0.37 tolerated(0.25) benign(0.094) TCGA-DU-6392-01 1 55319198 55319198 C T DHCR24 Missense_Mutation p.D436N 0.48 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 55319719 55319719 G A DHCR24 Silent p.N403N 0.25 TCGA-DU-6392-01 1 55337188 55337188 G A DHCR24 Silent p.Y237Y 0.33 TCGA-DU-6392-01 1 55340771 55340771 T C DHCR24 Missense_Mutation p.T203A 0.31 tolerated(0.06) benign(0.008) TCGA-DU-6392-01 1 55452039 55452039 G A TMEM61 Silent p.G95G 0.39 TCGA-DU-6392-01 1 55457874 55457874 C T TMEM61 3'UTR 0.32 TCGA-DU-6392-01 1 55560968 55560968 G A USP24 Nonsense_Mutation p.R2055* 0.28 TCGA-DU-6392-01 1 57161814 57161814 C A PRKAA2 Missense_Mutation p.A257E 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-DU-6392-01 1 57170134 57170134 G T PRKAA2 Missense_Mutation p.D427Y 0.08 deleterious(0.02) benign(0.396) TCGA-DU-6392-01 1 57233502 57233502 G A C1orf168 Missense_Mutation p.P355S 0.29 tolerated(1) benign(0.001) TCGA-DU-6392-01 1 57395139 57395139 G A C8B Missense_Mutation p.P572S 0.37 tolerated(0.3) benign(0.015) TCGA-DU-6392-01 1 57415267 57415267 G A C8B Silent p.G275G 0.35 TCGA-DU-6392-01 1 57422504 57422504 C T C8B Missense_Mutation p.C110Y 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 57425741 57425741 C T C8B Silent p.L67L 0.10 TCGA-DU-6392-01 1 59147880 59147880 C T MYSM1 Missense_Mutation p.C279Y 0.07 tolerated(1) benign(0) TCGA-DU-6392-01 1 5965469 5965469 T G NPHP4 Missense_Mutation p.N613T 0.10 deleterious(0.01) possibly_damaging(0.462) TCGA-DU-6392-01 1 60314120 60314120 G A HOOK1 Missense_Mutation p.V355I 0.09 tolerated(0.42) probably_damaging(0.998) TCGA-DU-6392-01 1 60324163 60324163 C T HOOK1 Nonsense_Mutation p.Q436* 0.38 TCGA-DU-6392-01 1 60456229 60456229 G C C1orf87 3'UTR 0.23 TCGA-DU-6392-01 1 60456303 60456303 G T C1orf87 3'UTR 0.35 TCGA-DU-6392-01 1 6154464 6154464 C T KCNAB2 Silent p.T217T 0.40 TCGA-DU-6392-01 1 6171834 6171834 C T CHD5 Splice_Site p.X1750_splice 0.17 TCGA-DU-6392-01 1 6173015 6173015 C A CHD5 Missense_Mutation p.E1652D 0.36 tolerated_low_confidence(0.16) benign(0.001) TCGA-DU-6392-01 1 61848933 61848933 A C NFIA Missense_Mutation p.K369T 0.29 tolerated(0.27) benign(0.018) TCGA-DU-6392-01 1 61921147 61921147 G A NFIA 3'UTR 0.47 TCGA-DU-6392-01 1 62190778 62190778 C T TM2D1 Nonsense_Mutation p.W67* 0.35 TCGA-DU-6392-01 1 62293185 62293185 G A INADL Missense_Mutation p.R637Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 62330279 62330279 C T INADL Missense_Mutation p.P937S 0.43 tolerated(0.22) benign(0.012) TCGA-DU-6392-01 1 62740589 62740589 G A KANK4 Nonsense_Mutation p.Q63* 0.08 TCGA-DU-6392-01 1 62941476 62941477 - A DOCK7 Frame_Shift_Ins p.G1924Wfs*5 0.08 TCGA-DU-6392-01 1 62979117 62979117 G T DOCK7 Missense_Mutation p.P1396H 0.09 tolerated(0.25) benign(0.001) TCGA-DU-6392-01 1 63005469 63005469 G T DOCK7 Missense_Mutation p.A1016D 0.14 deleterious(0.01) possibly_damaging(0.747) TCGA-DU-6392-01 1 63113847 63113847 C T DOCK7 Missense_Mutation p.R221H 0.24 tolerated(0.11) benign(0.011) TCGA-DU-6392-01 1 63113871 63113871 C T DOCK7 Missense_Mutation p.R213Q 0.29 tolerated(0.23) benign(0.009) TCGA-DU-6392-01 1 63119776 63119776 G A DOCK7 Missense_Mutation p.H67Y 0.41 tolerated(0.06) benign(0.071) TCGA-DU-6392-01 1 63128776 63128776 G A DOCK7 Nonsense_Mutation p.Q22* 0.09 TCGA-DU-6392-01 1 63872050 63872050 G T ALG6 Nonsense_Mutation p.E137* 0.11 TCGA-DU-6392-01 1 64011660 64011660 G T EFCAB7 Missense_Mutation p.R293M 0.46 deleterious(0.01) possibly_damaging(0.541) TCGA-DU-6392-01 1 64027519 64027519 G T EFCAB7 Missense_Mutation p.E496D 0.11 tolerated(0.06) benign(0.099) TCGA-DU-6392-01 1 64605866 64605866 C T ROR1 Missense_Mutation p.H229Y 0.33 tolerated(0.47) benign(0.208) TCGA-DU-6392-01 1 64643957 64643957 C T ROR1 Missense_Mutation p.R745W 0.48 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 64671402 64671402 G T UBE2U Missense_Mutation p.Q49H 0.09 tolerated(0.78) benign(0.005) TCGA-DU-6392-01 1 65141176 65141176 C T CACHD1 Silent p.N889N 0.41 TCGA-DU-6392-01 1 6520200 6520200 G T ESPN Missense_Mutation p.K853N 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 65234399 65234399 C T RAVER2 Nonsense_Mutation p.R104* 0.23 TCGA-DU-6392-01 1 6532586 6532586 C T PLEKHG5 Splice_Site p.X439_splice 0.18 TCGA-DU-6392-01 1 65524119 65524119 C T MIR101-1 RNA 0.29 TCGA-DU-6392-01 1 65845091 65845091 G T DNAJC6 Nonsense_Mutation p.E184* 0.43 TCGA-DU-6392-01 1 65855119 65855119 G A DNAJC6 Silent p.T458T 0.21 TCGA-DU-6392-01 1 6585870 6585870 G T NOL9 3'UTR 0.06 TCGA-DU-6392-01 1 6653596 6653596 G A KLHL21 Silent p.S541S 0.35 TCGA-DU-6392-01 1 6680296 6680297 - A PHF13 Frame_Shift_Ins p.T194Nfs*2 0.23 TCGA-DU-6392-01 1 6680322 6680322 G A PHF13 Missense_Mutation p.V201I 0.12 tolerated(0.99) benign(0.001) TCGA-DU-6392-01 1 6681484 6681484 G A PHF13 Nonsense_Mutation p.W230* 0.24 TCGA-DU-6392-01 1 66831427 66831427 C T PDE4B Silent p.S454S 0.12 TCGA-DU-6392-01 1 6695706 6695706 G A DNAJC11 3'UTR 0.32 TCGA-DU-6392-01 1 6700036 6700036 G A DNAJC11 Silent p.T393T 0.11 TCGA-DU-6392-01 1 67137651 67137651 G A SGIP1 Missense_Mutation p.R178H 0.53 tolerated(0.06) probably_damaging(0.984) TCGA-DU-6392-01 1 67185056 67185056 C T SGIP1 Silent p.V570V 0.41 TCGA-DU-6392-01 1 67243109 67243109 C T TCTEX1D1 Missense_Mutation p.A171V 0.10 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 1 67279792 67279792 A - WDR78 3'UTR 0.26 TCGA-DU-6392-01 1 67299299 67299299 G T WDR78 Missense_Mutation p.A661D 0.30 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 1 67340464 67340464 G A WDR78 Missense_Mutation p.T267I 0.31 tolerated(0.31) benign(0.001) TCGA-DU-6392-01 1 67356837 67356837 C A WDR78 Missense_Mutation p.D215Y 0.41 deleterious(0) probably_damaging(0.968) TCGA-DU-6392-01 1 67411875 67411875 C A MIER1 Missense_Mutation p.A79D 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 67470071 67470071 C T SLC35D1 Silent p.Q340Q 0.33 TCGA-DU-6392-01 1 67474798 67474798 G A SLC35D1 Missense_Mutation p.T310M 0.26 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 1 67486098 67486098 G A SLC35D1 Missense_Mutation p.T277M 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 67513002 67513002 G A SLC35D1 Silent p.N194N 0.46 TCGA-DU-6392-01 1 67519552 67519552 A G SLC35D1 Missense_Mutation p.Y49H 0.21 deleterious(0) probably_damaging(0.956) TCGA-DU-6392-01 1 67633832 67633832 C T IL23R Missense_Mutation p.A10V 0.42 tolerated(1) benign(0) TCGA-DU-6392-01 1 67724629 67724629 G T IL23R Nonsense_Mutation p.E570* 0.20 TCGA-DU-6392-01 1 67724722 67724722 G A IL23R Missense_Mutation p.V601M 0.29 tolerated(1) benign(0) TCGA-DU-6392-01 1 67786068 67786068 G A IL12RB2 Missense_Mutation p.R6K 0.38 tolerated(0.23) benign(0.169) TCGA-DU-6392-01 1 68943596 68943596 C A DEPDC1 Missense_Mutation p.Q724H 0.05 deleterious(0) probably_damaging(0.928) TCGA-DU-6392-01 1 68948463 68948463 T C DEPDC1 Missense_Mutation p.E343G 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 70555435 70555435 C A LRRC7 Missense_Mutation p.P1455H 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 70614326 70614326 C T LRRC40 Missense_Mutation p.R516H 0.08 tolerated(0.58) benign(0.001) TCGA-DU-6392-01 1 70736577 70736577 A G ANKRD13C Missense_Mutation p.V486A 0.41 deleterious(0) benign(0.4) TCGA-DU-6392-01 1 70758150 70758150 C A ANKRD13C Missense_Mutation p.S379I 0.33 deleterious(0) probably_damaging(0.928) TCGA-DU-6392-01 1 70883695 70883695 G A CTH Missense_Mutation p.C109Y 0.46 deleterious(0) probably_damaging(0.955) TCGA-DU-6392-01 1 71512530 71512530 A G PTGER3 Missense_Mutation p.V244A 0.34 deleterious(0.01) benign(0.194) TCGA-DU-6392-01 1 71534977 71534977 G T ZRANB2 Missense_Mutation p.S251Y 0.10 deleterious(0.05) unknown(0) TCGA-DU-6392-01 1 72241855 72241855 C A NEGR1 Missense_Mutation p.A179S 0.36 tolerated(0.08) benign(0.05) TCGA-DU-6392-01 1 74665459 74665459 A T FPGT-TNNI3K Missense_Mutation p.E78V 0.09 deleterious_low_confidence(0) benign(0.203) TCGA-DU-6392-01 1 74701866 74701866 G A FPGT-TNNI3K Missense_Mutation p.E155K 0.28 deleterious_low_confidence(0.02) benign(0.067) TCGA-DU-6392-01 1 74957842 74957842 G A TNNI3K Missense_Mutation p.C849Y 0.40 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-DU-6392-01 1 75039105 75039105 C T C1orf173 Silent p.V763V 0.08 TCGA-DU-6392-01 1 75229674 75229675 - A TYW3 Frame_Shift_Ins p.R222Kfs*13 0.33 TCGA-DU-6392-01 1 75699770 75699770 C T SLC44A5 Missense_Mutation p.A252T 0.40 tolerated(0.1) benign(0.408) TCGA-DU-6392-01 1 76211522 76211522 C T ACADM Missense_Mutation p.P215S 0.27 tolerated(0.07) benign(0.065) TCGA-DU-6392-01 1 76280818 76280818 C T MSH4 Missense_Mutation p.S271F 0.15 deleterious(0) probably_damaging(0.961) TCGA-DU-6392-01 1 76397592 76397592 G A ASB17 Silent p.L129L 0.31 TCGA-DU-6392-01 1 76877904 76877905 - T ST6GALNAC3 Frame_Shift_Ins p.K145Qfs*53 0.19 TCGA-DU-6392-01 1 7700541 7700541 T C CAMTA1 Missense_Mutation p.S198P 0.42 deleterious(0.02) benign(0.301) TCGA-DU-6392-01 1 7725163 7725163 C A CAMTA1 Silent p.V852V 0.37 TCGA-DU-6392-01 1 77759556 77759556 A G AK5 Missense_Mutation p.D109G 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 1 78041867 78041867 A G ZZZ3 Silent p.H739H 0.06 TCGA-DU-6392-01 1 78045282 78045282 G T ZZZ3 Missense_Mutation p.P671H 0.13 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 78046696 78046696 G A ZZZ3 Missense_Mutation p.T656I 0.26 deleterious(0.02) possibly_damaging(0.88) TCGA-DU-6392-01 1 78180376 78180376 C T USP33 Missense_Mutation p.R744Q 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 1 78183609 78183609 C A USP33 Missense_Mutation p.A652S 0.26 tolerated(1) benign(0.013) TCGA-DU-6392-01 1 78309003 78309003 G T FAM73A Missense_Mutation p.D303Y 0.32 deleterious(0.02) probably_damaging(0.926) TCGA-DU-6392-01 1 78324657 78324657 G T FAM73A Missense_Mutation p.S344I 0.30 tolerated(0.13) benign(0.328) TCGA-DU-6392-01 1 78383379 78383379 C T NEXN Silent p.D52D 0.21 TCGA-DU-6392-01 1 78392297 78392297 G A NEXN Splice_Site p.X229_splice 0.57 TCGA-DU-6392-01 1 78433850 78433850 G A FUBP1 Silent p.D83D 0.53 TCGA-DU-6392-01 1 7886619 7886619 C T PER3 Silent p.H671H 0.14 TCGA-DU-6392-01 1 7887365 7887365 C A PER3 Silent p.T784T 0.35 TCGA-DU-6392-01 1 7887550 7887550 C A PER3 Missense_Mutation p.T846N 0.08 deleterious(0.04) possibly_damaging(0.788) TCGA-DU-6392-01 1 78958518 78958519 - T PTGFR Frame_Shift_Ins p.S33Ffs*27 0.21 TCGA-DU-6392-01 1 78958573 78958573 G A PTGFR Missense_Mutation p.A49T 0.25 tolerated(0.28) possibly_damaging(0.733) TCGA-DU-6392-01 1 78958942 78958942 C A PTGFR Missense_Mutation p.L172I 0.07 tolerated(0.09) benign(0.419) TCGA-DU-6392-01 1 79002308 79002308 A C PTGFR Missense_Mutation p.K339T 0.09 tolerated(0.32) possibly_damaging(0.786) TCGA-DU-6392-01 1 79116271 79116272 - A IFI44 Frame_Shift_Ins p.N132Kfs*16 0.22 TCGA-DU-6392-01 1 79121166 79121166 C A IFI44 Silent p.I270I 0.10 TCGA-DU-6392-01 1 8074335 8074335 C A ERRFI1 Missense_Mutation p.E108D 0.06 tolerated(0.55) possibly_damaging(0.527) TCGA-DU-6392-01 1 809594 809594 C T FAM41C 5'Flank 0.45 TCGA-DU-6392-01 1 82421735 82421735 G A LPHN2 Missense_Mutation p.E653K 0.28 tolerated(0.37) benign(0.236) TCGA-DU-6392-01 1 82436143 82436143 C T LPHN2 Missense_Mutation p.A943V 0.62 tolerated(0.88) benign(0.138) TCGA-DU-6392-01 1 82451005 82451005 A G LPHN2 Silent p.S1141S 0.07 TCGA-DU-6392-01 1 82452652 82452652 C T LPHN2 Intron 0.27 TCGA-DU-6392-01 1 8386014 8386014 G A SLC45A1 Silent p.S209S 0.12 TCGA-DU-6392-01 1 8390529 8390529 C A SLC45A1 Missense_Mutation p.L326I 0.38 tolerated(0.33) benign(0.05) TCGA-DU-6392-01 1 8418647 8418647 C T RERE Silent p.E1316E 0.29 TCGA-DU-6392-01 1 84417926 84417926 G C TTLL7 5'UTR 0.29 TCGA-DU-6392-01 1 85115638 85115638 C T SSX2IP Intron 0.13 TCGA-DU-6392-01 1 85331180 85331180 C T LPAR3 Silent p.R208R 0.27 TCGA-DU-6392-01 1 85405352 85405352 G A MCOLN2 Missense_Mutation p.R332W 0.29 deleterious(0) possibly_damaging(0.88) TCGA-DU-6392-01 1 85547045 85547045 C A WDR63 Missense_Mutation p.L78M 0.31 tolerated(0.54) benign(0.015) TCGA-DU-6392-01 1 85589885 85589885 T C WDR63 Missense_Mutation p.I688T 0.30 deleterious(0) possibly_damaging(0.461) TCGA-DU-6392-01 1 85816136 85816136 C T DDAH1 Missense_Mutation p.A187T 0.25 tolerated(0.22) possibly_damaging(0.783) TCGA-DU-6392-01 1 86172138 86172138 G A ZNHIT6 Nonsense_Mutation p.R237* 0.25 TCGA-DU-6392-01 1 86173468 86173468 A G ZNHIT6 Missense_Mutation p.F167S 0.04 tolerated_low_confidence(0.08) benign(0.004) TCGA-DU-6392-01 1 86173606 86173606 G A ZNHIT6 Missense_Mutation p.T121M 0.65 tolerated_low_confidence(1) benign(0.002) TCGA-DU-6392-01 1 8617539 8617539 C T RERE Missense_Mutation p.R189H 0.36 probably_damaging(0.998) TCGA-DU-6392-01 1 8617555 8617555 C T RERE Missense_Mutation p.V184I 0.37 probably_damaging(0.987) TCGA-DU-6392-01 1 86200457 86200457 G T COL24A1 Missense_Mutation p.P1658H 0.07 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 1 86210352 86210352 C A COL24A1 Missense_Mutation p.D1557Y 0.08 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 1 86355288 86355288 C A COL24A1 Missense_Mutation p.Q977H 0.09 deleterious(0.03) possibly_damaging(0.547) TCGA-DU-6392-01 1 86900358 86900358 C T CLCA2 Missense_Mutation p.T301I 0.21 tolerated(0.08) benign(0.006) TCGA-DU-6392-01 1 86909576 86909576 C A CLCA2 Missense_Mutation p.A532D 0.29 tolerated(0.17) benign(0.049) TCGA-DU-6392-01 1 86965612 86965612 C T CLCA1 Missense_Mutation p.P877S 0.50 tolerated(0.08) benign(0.063) TCGA-DU-6392-01 1 87101749 87101749 C A RP4-651E10.4 Intron 0.30 TCGA-DU-6392-01 1 87188228 87188228 G A SH3GLB1 Missense_Mutation p.A117T 0.21 tolerated(0.75) possibly_damaging(0.611) TCGA-DU-6392-01 1 87207962 87207962 C T SH3GLB1 Missense_Mutation p.A299V 0.25 tolerated(0.49) benign(0.001) TCGA-DU-6392-01 1 87208030 87208030 C A SH3GLB1 Missense_Mutation p.L322I 0.27 tolerated(0.15) benign(0.277) TCGA-DU-6392-01 1 892506 892506 C T NOC2L Silent p.P109P 0.40 TCGA-DU-6392-01 1 89251784 89251784 C A PKN2 Intron 0.15 TCGA-DU-6392-01 1 89251812 89251812 C T PKN2 Silent p.L399L 0.15 TCGA-DU-6392-01 1 89270077 89270077 C T PKN2 Missense_Mutation p.R429C 0.29 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 89271345 89271345 C T PKN2 Missense_Mutation p.P556L 0.25 tolerated(0.26) benign(0.001) TCGA-DU-6392-01 1 8928048 8928048 T A ENO1 Missense_Mutation p.K103N 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 1 89294209 89294209 A G PKN2 Missense_Mutation p.E822G 0.29 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 1 8930530 8930530 G A ENO1 Missense_Mutation p.A74V 0.32 deleterious_low_confidence(0.05) benign(0.025) TCGA-DU-6392-01 1 89448756 89448756 G A RBMXL1 Missense_Mutation p.R252C 0.63 deleterious(0) possibly_damaging(0.901) TCGA-DU-6392-01 1 89448840 89448840 C A RBMXL1 Missense_Mutation p.D224Y 0.27 tolerated(0.07) possibly_damaging(0.566) TCGA-DU-6392-01 1 89448867 89448867 A G RBMXL1 Missense_Mutation p.S215P 0.58 deleterious(0.03) possibly_damaging(0.866) TCGA-DU-6392-01 1 89449270 89449270 C A RBMXL1 Missense_Mutation p.K80N 0.22 deleterious(0.02) probably_damaging(0.981) TCGA-DU-6392-01 1 89449569 89449569 C T RBMXL1 5'UTR 0.32 TCGA-DU-6392-01 1 89616141 89616141 T C GBP7 Missense_Mutation p.H248R 0.26 tolerated(0.28) benign(0.049) TCGA-DU-6392-01 1 89729442 89729442 G A GBP5 Missense_Mutation p.R447W 0.23 deleterious(0.01) benign(0.013) TCGA-DU-6392-01 1 898614 898614 C T KLHL17 Missense_Mutation p.R390W 0.40 tolerated(0.18) possibly_damaging(0.903) TCGA-DU-6392-01 1 9011536 9011536 C T CA6 Intron 0.43 TCGA-DU-6392-01 1 90178373 90178373 C T LRRC8C Missense_Mutation p.P82S 0.27 tolerated(0.74) benign(0.016) TCGA-DU-6392-01 1 90179921 90179921 C A LRRC8C Missense_Mutation p.H598N 0.24 tolerated(1) benign(0.001) TCGA-DU-6392-01 1 90473240 90473240 A C ZNF326 Missense_Mutation p.E182D 0.53 tolerated(0.19) probably_damaging(0.931) TCGA-DU-6392-01 1 9083027 9083027 G A SLC2A7 Silent p.G87G 0.46 TCGA-DU-6392-01 1 91182144 91182144 G A BARHL2 Silent p.S203S 0.21 TCGA-DU-6392-01 1 91406643 91406643 C A ZNF644 Missense_Mutation p.G90C 0.16 tolerated(0.06) possibly_damaging(0.627) TCGA-DU-6392-01 1 91731665 91731665 C A HFM1 Splice_Site p.X1295_splice 0.08 TCGA-DU-6392-01 1 91841220 91841220 C A HFM1 Missense_Mutation p.R487I 0.54 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 92327103 92327103 C A TGFBR3 5'UTR 0.19 TCGA-DU-6392-01 1 92327108 92327108 C T TGFBR3 5'UTR 0.18 TCGA-DU-6392-01 1 92442855 92442855 G A BRDT Missense_Mutation p.A292T 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 92446488 92446488 T C BRDT Silent p.S501S 0.16 TCGA-DU-6392-01 1 92612769 92612769 A G BTBD8 Silent p.E321E 0.07 TCGA-DU-6392-01 1 92729282 92729282 C T GLMN Missense_Mutation p.R436H 0.53 tolerated(0.53) benign(0.001) TCGA-DU-6392-01 1 92733470 92733470 C A GLMN Missense_Mutation p.Q366H 0.08 deleterious(0.02) possibly_damaging(0.863) TCGA-DU-6392-01 1 92754541 92754541 C T GLMN Missense_Mutation p.V188M 0.24 deleterious(0.01) possibly_damaging(0.641) TCGA-DU-6392-01 1 92767053 92767053 C T RPAP2 Missense_Mutation p.A47V 0.27 deleterious(0.04) benign(0.011) TCGA-DU-6392-01 1 92789215 92789215 C T RPAP2 Silent p.S246S 0.08 TCGA-DU-6392-01 1 9305383 9305383 C T H6PD Silent p.H130H 0.15 TCGA-DU-6392-01 1 93159366 93159366 T - EVI5 Frame_Shift_Del p.M408* 0.25 TCGA-DU-6392-01 1 9322333 9322333 C T H6PD Missense_Mutation p.R321C 0.56 deleterious(0) possibly_damaging(0.86) TCGA-DU-6392-01 1 9323955 9323955 G A H6PD Missense_Mutation p.G468D 0.38 tolerated(0.09) benign(0.179) TCGA-DU-6392-01 1 9324806 9324806 C T H6PD Missense_Mutation p.R752C 0.27 deleterious(0) probably_damaging(0.932) TCGA-DU-6392-01 1 9324955 9324955 G A H6PD 3'UTR 0.35 TCGA-DU-6392-01 1 93341945 93341945 A C FAM69A Missense_Mutation p.W33G 0.13 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 1 93602428 93602428 G A MTF2 Silent p.E542E 0.59 TCGA-DU-6392-01 1 93646192 93646192 G A CCDC18 5'Flank 0.67 TCGA-DU-6392-01 1 94016649 94016649 G T FNBP1L Missense_Mutation p.E599D 0.23 tolerated(1) benign(0.025) TCGA-DU-6392-01 1 94048337 94048337 G T BCAR3 Missense_Mutation p.P403T 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-DU-6392-01 1 94048358 94048358 C A BCAR3 Missense_Mutation p.D396Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 1 94049657 94049657 G A BCAR3 Silent p.S317S 0.58 TCGA-DU-6392-01 1 94054696 94054696 G A BCAR3 Missense_Mutation p.T256M 0.14 deleterious(0.01) benign(0.085) TCGA-DU-6392-01 1 94057826 94057826 C T BCAR3 Missense_Mutation p.R161Q 0.35 deleterious(0.02) probably_damaging(0.99) TCGA-DU-6392-01 1 94467503 94467503 C T ABCA4 Missense_Mutation p.D2065N 0.57 tolerated(0.2) benign(0.146) TCGA-DU-6392-01 1 94496601 94496601 C T ABCA4 Missense_Mutation p.A1402T 0.34 deleterious(0.03) benign(0.006) TCGA-DU-6392-01 1 94640257 94640257 T G ARHGAP29 Missense_Mutation p.K985T 0.30 tolerated(0.14) possibly_damaging(0.697) TCGA-DU-6392-01 1 94655666 94655666 G A ARHGAP29 Intron 0.61 TCGA-DU-6392-01 1 94685814 94685814 C T ARHGAP29 Missense_Mutation p.A114T 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 1 95357892 95357892 G A SLC44A3 Missense_Mutation p.R559Q 0.58 tolerated(0.22) possibly_damaging(0.532) TCGA-DU-6392-01 1 95367782 95367782 A G CNN3 Silent p.I93I 0.31 TCGA-DU-6392-01 1 95609453 95609453 G T TMEM56 5'UTR 0.20 TCGA-DU-6392-01 1 95609489 95609489 T C TMEM56 Missense_Mutation p.V11A 0.38 tolerated(0.07) benign(0.002) TCGA-DU-6392-01 1 9627405 9627405 A G SLC25A33 Silent p.G100G 0.33 TCGA-DU-6392-01 1 97544440 97544440 T A DPYD 3'UTR 0.22 TCGA-DU-6392-01 1 9776516 9776516 G T PIK3CD Missense_Mutation p.V207L 0.39 deleterious(0.04) benign(0.042) TCGA-DU-6392-01 1 97771825 97771825 C T DPYD Missense_Mutation p.R696H 0.21 deleterious(0.04) benign(0.017) TCGA-DU-6392-01 1 9783240 9783240 A G PIK3CD Silent p.V828V 0.08 TCGA-DU-6392-01 1 9795563 9795563 C T CLSTN1 Silent p.T615T 0.07 TCGA-DU-6392-01 1 98165066 98165066 G T DPYD Missense_Mutation p.P174H 0.21 deleterious(0) benign(0.087) TCGA-DU-6392-01 1 98186449 98186449 A G DPYD Intron 0.10 TCGA-DU-6392-01 1 98187214 98187214 G T DPYD Missense_Mutation p.A112D 0.28 deleterious(0) possibly_damaging(0.889) TCGA-DU-6392-01 1 986164 986164 C T AGRN Missense_Mutation p.R1734C 0.46 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 1 99161245 99161245 T G SNX7 Missense_Mutation p.S271A 0.28 tolerated(0.66) benign(0.044) TCGA-DU-6392-01 20 10023883 10023883 C A ANKEF1 Missense_Mutation p.L154I 0.10 tolerated(0.05) possibly_damaging(0.731) TCGA-DU-6392-01 20 10026343 10026343 G A ANKEF1 Missense_Mutation p.R273Q 0.10 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 20 10030593 10030593 A G ANKEF1 Missense_Mutation p.Y459C 0.34 tolerated(0.05) probably_damaging(0.931) TCGA-DU-6392-01 20 10273855 10273855 C T SNAP25 Silent p.D70D 0.08 TCGA-DU-6392-01 20 10625533 10625533 C T JAG1 Nonsense_Mutation p.W774* 0.06 TCGA-DU-6392-01 20 10625555 10625555 G A JAG1 Missense_Mutation p.T767M 0.38 tolerated(0.05) probably_damaging(0.956) TCGA-DU-6392-01 20 10628720 10628720 G A JAG1 Silent p.N536N 0.29 TCGA-DU-6392-01 20 10639258 10639258 G A JAG1 Silent p.R184R 0.39 TCGA-DU-6392-01 20 11903917 11903917 G A BTBD3 Missense_Mutation p.R391H 0.09 tolerated(0.09) benign(0.288) TCGA-DU-6392-01 20 126110 126110 G A DEFB126 Missense_Mutation p.C38Y 0.55 deleterious(0) probably_damaging(0.951) TCGA-DU-6392-01 20 13098296 13098296 C T SPTLC3 Missense_Mutation p.P359L 0.35 deleterious(0.03) probably_damaging(0.982) TCGA-DU-6392-01 20 13514789 13514789 C T TASP1 Splice_Site p.X226_splice 0.11 TCGA-DU-6392-01 20 13763274 13763275 - T ESF1 Frame_Shift_Ins p.N171Kfs*24 0.14 TCGA-DU-6392-01 20 13868588 13868588 C A SEL1L2 Missense_Mutation p.L221F 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 13971239 13971239 A C SEL1L2 5'UTR 0.14 TCGA-DU-6392-01 20 1559045 1559045 C A RP4-576H24.4 Silent p.R123R 0.35 TCGA-DU-6392-01 20 15948229 15948229 C T MACROD2 Silent p.G313G 0.40 TCGA-DU-6392-01 20 16385459 16385459 C T KIF16B Missense_Mutation p.G595R 0.13 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 20 16486802 16486802 C T KIF16B Missense_Mutation p.V245I 0.27 tolerated(0.05) probably_damaging(0.998) TCGA-DU-6392-01 20 17474837 17474837 G T BFSP1 Missense_Mutation p.S627Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 20 17475209 17475209 G T BFSP1 Missense_Mutation p.S503Y 0.44 tolerated(0.05) probably_damaging(0.959) TCGA-DU-6392-01 20 17475552 17475552 C T BFSP1 Missense_Mutation p.A389T 0.35 tolerated(0.53) benign(0.01) TCGA-DU-6392-01 20 17505504 17505504 G A BFSP1 Missense_Mutation p.R143W 0.37 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 20 17587726 17587726 C T DSTN Missense_Mutation p.R145W 0.39 tolerated(0.18) benign(0.099) TCGA-DU-6392-01 20 17608171 17608171 G A RRBP1 Missense_Mutation p.A536V 0.53 tolerated(0.16) benign(0.001) TCGA-DU-6392-01 20 17929569 17929569 G T SNX5 Missense_Mutation p.L295I 0.27 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 20 17970728 17970728 T C MGME1 Silent p.I337I 0.11 TCGA-DU-6392-01 20 18005549 18005549 G A OVOL2 Missense_Mutation p.R187C 0.13 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 19665995 19665995 C T SLC24A3 Silent p.F438F 0.36 TCGA-DU-6392-01 20 19701839 19701839 C T SLC24A3 3'UTR 0.36 TCGA-DU-6392-01 20 19951529 19951529 C T RIN2 Missense_Mutation p.A244V 0.23 deleterious(0) possibly_damaging(0.742) TCGA-DU-6392-01 20 20023022 20023022 G A CRNKL1 Missense_Mutation p.R532C 0.41 deleterious(0) possibly_damaging(0.568) TCGA-DU-6392-01 20 20030056 20030056 C A CRNKL1 Missense_Mutation p.R236I 0.36 deleterious(0) possibly_damaging(0.57) TCGA-DU-6392-01 20 20036606 20036606 G T CRNKL1 Missense_Mutation p.A18D 0.39 deleterious_low_confidence(0) benign(0.07) TCGA-DU-6392-01 20 20036685 20036685 G A CRNKL1 5'UTR 0.39 TCGA-DU-6392-01 20 20246167 20246167 T A C20orf26 Intron 0.09 TCGA-DU-6392-01 20 20501713 20501713 G A RALGAPA2 Missense_Mutation p.T1311M 0.40 tolerated(0.06) benign(0.357) TCGA-DU-6392-01 20 20661389 20661389 A G RALGAPA2 Missense_Mutation p.Y55H 0.27 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 20 21143787 21143787 G A RP4-777D9.2 Intron 0.38 TCGA-DU-6392-01 20 21327052 21327052 G T XRN2 Splice_Site p.X510_splice 0.12 TCGA-DU-6392-01 20 21367644 21367644 G T XRN2 Missense_Mutation p.Q929H 0.38 tolerated_low_confidence(0.07) benign(0.146) TCGA-DU-6392-01 20 21494336 21494336 A G NKX2-2 5'UTR 0.44 TCGA-DU-6392-01 20 23016577 23016577 C T SSTR4 Missense_Mutation p.R153C 0.44 deleterious(0.01) possibly_damaging(0.849) TCGA-DU-6392-01 20 23065073 23065073 A G CD93 Missense_Mutation p.I586T 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-DU-6392-01 20 23065232 23065232 T C CD93 Missense_Mutation p.K533R 0.39 tolerated(0.3) benign(0.001) TCGA-DU-6392-01 20 23065850 23065850 G A CD93 Missense_Mutation p.T327M 0.11 tolerated(0.13) benign(0.329) TCGA-DU-6392-01 20 23350797 23350797 G A GZF1 Missense_Mutation p.G619R 0.31 tolerated(0.07) benign(0.295) TCGA-DU-6392-01 20 23586319 23586319 C A CST9 Missense_Mutation p.Q61H 0.07 tolerated(0.05) benign(0.414) TCGA-DU-6392-01 20 238458 238458 C A DEFB132 Missense_Mutation p.F13L 0.14 tolerated(0.14) benign(0.001) TCGA-DU-6392-01 20 2411126 2411126 G A TGM6 Silent p.K571K 0.11 TCGA-DU-6392-01 20 2413265 2413265 C T TGM6 Silent p.I699I 0.39 TCGA-DU-6392-01 20 24523832 24523832 C T SYNDIG1 Silent p.A33A 0.25 TCGA-DU-6392-01 20 2474511 2474511 C A ZNF343 Missense_Mutation p.D11Y 0.08 deleterious_low_confidence(0) benign(0.029) TCGA-DU-6392-01 20 24939633 24939633 C A CST7 Missense_Mutation p.L105M 0.38 tolerated(0.09) benign(0.022) TCGA-DU-6392-01 20 24952138 24952138 C T APMAP Missense_Mutation p.A166T 0.33 tolerated(0.18) benign(0.201) TCGA-DU-6392-01 20 25228967 25228967 C T PYGB Silent p.D51D 0.58 TCGA-DU-6392-01 20 25255257 25255257 C T PYGB Silent p.Y186Y 0.41 TCGA-DU-6392-01 20 25259041 25259041 G A PYGB Silent p.S314S 0.09 TCGA-DU-6392-01 20 25434110 25434110 C T NINL Missense_Mutation p.A1376T 0.48 tolerated(0.23) benign(0.291) TCGA-DU-6392-01 20 25434265 25434265 G A NINL Missense_Mutation p.T1324M 0.29 deleterious(0.02) possibly_damaging(0.766) TCGA-DU-6392-01 20 25457246 25457246 G A NINL Missense_Mutation p.A894V 0.44 tolerated(0.57) benign(0.001) TCGA-DU-6392-01 20 25457694 25457694 G T NINL Missense_Mutation p.L745M 0.50 deleterious(0.03) benign(0.38) TCGA-DU-6392-01 20 25470565 25470565 C T NINL Silent p.S514S 0.41 TCGA-DU-6392-01 20 25491316 25491316 C T NINL Missense_Mutation p.A171T 0.36 tolerated(0.07) benign(0.443) TCGA-DU-6392-01 20 25507058 25507058 C T NINL Missense_Mutation p.D56N 0.41 tolerated(0.2) benign(0.005) TCGA-DU-6392-01 20 25655668 25655668 T C ZNF337 Nonstop_Mutation p.*752Wext*27 0.13 TCGA-DU-6392-01 20 257686 257686 G A C20orf96 Missense_Mutation p.A275V 0.40 tolerated(1) benign(0.003) TCGA-DU-6392-01 20 2577918 2577918 T C TMC2 Missense_Mutation p.Y400H 0.50 tolerated(0.2) benign(0.168) TCGA-DU-6392-01 20 2592911 2592911 C T TMC2 Silent p.N556N 0.09 TCGA-DU-6392-01 20 2592935 2592935 G A TMC2 Silent p.L564L 0.11 TCGA-DU-6392-01 20 2621951 2621951 C T TMC2 Missense_Mutation p.P892L 0.48 tolerated_low_confidence(0.1) benign(0.001) TCGA-DU-6392-01 20 2634034 2634034 C A NOP56 Missense_Mutation p.S68Y 0.49 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 20 2635158 2635158 G A NOP56 Missense_Mutation p.A103T 0.43 tolerated(0.06) benign(0.18) TCGA-DU-6392-01 20 2637823 2637823 G A NOP56 Missense_Mutation p.A460T 0.43 tolerated(0.24) possibly_damaging(0.499) TCGA-DU-6392-01 20 270254 270254 G A C20orf96 Nonsense_Mutation p.Q45* 0.42 TCGA-DU-6392-01 20 2774977 2774977 G T CPXM1 Silent p.T688T 0.35 TCGA-DU-6392-01 20 2775939 2775939 A C CPXM1 Missense_Mutation p.L615R 0.45 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 20 2843290 2843290 C T VPS16 Silent p.A379A 0.35 TCGA-DU-6392-01 20 2845660 2845660 G A VPS16 Missense_Mutation p.A655T 0.43 tolerated(0.19) benign(0.354) TCGA-DU-6392-01 20 2847221 2847221 G A VPS16 3'UTR 0.46 TCGA-DU-6392-01 20 2945784 2945784 A C PTPRA Missense_Mutation p.R117S 0.37 tolerated_low_confidence(0.52) benign(0.003) TCGA-DU-6392-01 20 2998533 2998533 G A PTPRA Missense_Mutation p.V339I 0.09 deleterious(0.03) probably_damaging(0.993) TCGA-DU-6392-01 20 3002788 3002788 C T PTPRA Missense_Mutation p.P417L 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 3002825 3002825 C A PTPRA Silent p.A429A 0.31 TCGA-DU-6392-01 20 30115291 30115291 C A HM13 Missense_Mutation p.A63D 0.11 tolerated(0.07) benign(0.026) TCGA-DU-6392-01 20 30136813 30136813 A G HM13 Intron 0.36 TCGA-DU-6392-01 20 30142623 30142623 G A HM13 Missense_Mutation p.V267I 0.28 deleterious(0.02) benign(0.209) TCGA-DU-6392-01 20 3018748 3018748 A G PTPRA Missense_Mutation p.D793G 0.19 tolerated(0.69) possibly_damaging(0.66) TCGA-DU-6392-01 20 3028480 3028480 G A MRPS26 Missense_Mutation p.G195R 0.12 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 30365440 30365440 C A TPX2 Missense_Mutation p.P294H 0.42 deleterious(0) possibly_damaging(0.823) TCGA-DU-6392-01 20 30414481 30414481 T C MYLK2 Missense_Mutation p.I349T 0.12 deleterious(0) possibly_damaging(0.677) TCGA-DU-6392-01 20 30433195 30433195 G A FOXS1 Nonsense_Mutation p.R51* 0.28 TCGA-DU-6392-01 20 30521600 30521600 C T TTLL9 Intron 0.50 TCGA-DU-6392-01 20 30729426 30729426 G A TM9SF4 Missense_Mutation p.R119Q 0.38 tolerated(0.13) benign(0.005) TCGA-DU-6392-01 20 30822373 30822373 C A POFUT1 Missense_Mutation p.T359N 0.12 deleterious(0) probably_damaging(0.911) TCGA-DU-6392-01 20 30898940 30898940 C T KIF3B Missense_Mutation p.R454W 0.42 deleterious(0) possibly_damaging(0.793) TCGA-DU-6392-01 20 30904663 30904663 G A KIF3B Silent p.R578R 0.28 TCGA-DU-6392-01 20 30954259 30954259 A C ASXL1 Missense_Mutation p.K44Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 20 31017711 31017711 G A ASXL1 Silent p.S191S 0.41 TCGA-DU-6392-01 20 31022979 31022979 A G ASXL1 Missense_Mutation p.T822A 0.36 tolerated_low_confidence(0.22) benign(0.023) TCGA-DU-6392-01 20 3128240 3128240 C T FASTKD5 Missense_Mutation p.A493T 0.23 deleterious(0.01) possibly_damaging(0.639) TCGA-DU-6392-01 20 31386361 31386361 C T DNMT3B Missense_Mutation p.P529L 0.15 deleterious(0.01) benign(0.231) TCGA-DU-6392-01 20 31393213 31393213 G T DNMT3B Missense_Mutation p.K767N 0.43 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 20 31395665 31395665 C T DNMT3B Nonsense_Mutation p.R840* 0.10 TCGA-DU-6392-01 20 31671602 31671602 G T BPIFB4 Missense_Mutation p.G200V 0.39 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 20 31672753 31672753 G A BPIFB4 Missense_Mutation p.V245M 0.43 deleterious(0.01) possibly_damaging(0.873) TCGA-DU-6392-01 20 31690816 31690816 T A BPIFB4 Missense_Mutation p.F559Y 0.09 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 20 31695611 31695611 C T BPIFB4 Silent p.D602D 0.43 TCGA-DU-6392-01 20 3171368 3171368 G A DDRGK1 Silent p.A292A 0.49 TCGA-DU-6392-01 20 31757100 31757100 C T BPIFA2 Missense_Mutation p.T50I 0.34 tolerated(0.12) benign(0.063) TCGA-DU-6392-01 20 31967300 31967300 A - CDK5RAP1 Frame_Shift_Del p.F358Lfs*16 0.19 TCGA-DU-6392-01 20 3209230 3209230 G A SLC4A11 Silent p.F815F 0.32 TCGA-DU-6392-01 20 3212183 3212183 C T SLC4A11 Silent p.K290K 0.26 TCGA-DU-6392-01 20 3214251 3214251 A G SLC4A11 Missense_Mutation p.V256A 0.12 deleterious(0) probably_damaging(0.97) TCGA-DU-6392-01 20 32232249 32232249 C T CBFA2T2 Missense_Mutation p.R538W 0.44 deleterious(0) probably_damaging(0.925) TCGA-DU-6392-01 20 32255536 32255536 C T ACTL10 Missense_Mutation p.T78I 0.41 deleterious(0.02) probably_damaging(0.985) TCGA-DU-6392-01 20 32264576 32264576 C T E2F1 Missense_Mutation p.D426N 0.45 deleterious(0.01) possibly_damaging(0.84) TCGA-DU-6392-01 20 32379026 32379026 C T ZNF341 Silent p.C749C 0.37 TCGA-DU-6392-01 20 32664552 32664552 A G RALY Missense_Mutation p.I197V 0.09 deleterious(0.04) probably_damaging(0.928) TCGA-DU-6392-01 20 33147655 33147655 G A MAP1LC3A Missense_Mutation p.G111S 0.41 deleterious(0) probably_damaging(0.92) TCGA-DU-6392-01 20 33147675 33147675 C T MAP1LC3A Silent p.Y117Y 0.36 TCGA-DU-6392-01 20 33337721 33337721 C T NCOA6 Silent p.T759T 0.44 TCGA-DU-6392-01 20 334193 334193 G A NRSN2 Missense_Mutation p.A177T 0.11 tolerated(0.3) benign(0.003) TCGA-DU-6392-01 20 33449298 33449298 C T GGT7 Missense_Mutation p.A209T 0.35 deleterious(0.03) probably_damaging(0.975) TCGA-DU-6392-01 20 33501898 33501898 G A ACSS2 Splice_Site p.X215_splice 0.16 TCGA-DU-6392-01 20 33501965 33501965 G A ACSS2 Missense_Mutation p.C237Y 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-DU-6392-01 20 33511157 33511157 G A ACSS2 Missense_Mutation p.R540H 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 33568472 33568472 G A MYH7B Missense_Mutation p.R187H 0.41 probably_damaging(0.999) TCGA-DU-6392-01 20 33568531 33568531 C A MYH7B Missense_Mutation p.L207M 0.34 possibly_damaging(0.863) TCGA-DU-6392-01 20 33575077 33575077 C T MYH7B Silent p.A420A 0.40 TCGA-DU-6392-01 20 33584474 33584474 G A MYH7B Missense_Mutation p.R1102H 0.26 probably_damaging(0.984) TCGA-DU-6392-01 20 33586624 33586624 C T MYH7B Missense_Mutation p.R1408W 0.29 probably_damaging(0.993) TCGA-DU-6392-01 20 33632378 33632378 C T TRPC4AP Silent p.T265T 0.32 TCGA-DU-6392-01 20 33703440 33703440 G A EDEM2 Silent p.S511S 0.08 TCGA-DU-6392-01 20 33839824 33839824 G T MMP24 Missense_Mutation p.S171I 0.11 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 20 33875125 33875125 C T FAM83C Missense_Mutation p.G486D 0.43 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-DU-6392-01 20 34021926 34021926 G A GDF5 Silent p.C429C 0.34 TCGA-DU-6392-01 20 34022013 34022013 G A GDF5 Silent p.C400C 0.45 TCGA-DU-6392-01 20 34025186 34025186 A G GDF5 Missense_Mutation p.S175P 0.33 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 20 34025774 34025774 G A GDF5 5'UTR 0.40 TCGA-DU-6392-01 20 34091114 34091114 C T CEP250 Silent p.I1639I 0.47 TCGA-DU-6392-01 20 34092805 34092805 A G CEP250 Missense_Mutation p.E2203G 0.23 possibly_damaging(0.783) TCGA-DU-6392-01 20 34099322 34099322 C T CEP250 Missense_Mutation p.A2399V 0.28 probably_damaging(0.999) TCGA-DU-6392-01 20 34143831 34143831 C A ERGIC3 Missense_Mutation p.L254M 0.11 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 20 34144848 34144848 G A ERGIC3 Silent p.S333S 0.48 TCGA-DU-6392-01 20 34263069 34263069 C A NFS1 Missense_Mutation p.Q282H 0.32 deleterious(0.01) probably_damaging(0.926) TCGA-DU-6392-01 20 34284379 34284379 C A NFS1 Missense_Mutation p.V110L 0.24 deleterious(0.03) benign(0.247) TCGA-DU-6392-01 20 34285617 34285617 G A NFS1 Missense_Mutation p.R105C 0.35 deleterious(0.01) possibly_damaging(0.717) TCGA-DU-6392-01 20 34288814 34288814 G T ROMO1 Missense_Mutation p.G76C 0.28 tolerated(0.09) probably_damaging(1) TCGA-DU-6392-01 20 34319989 34319989 C T RBM39 Missense_Mutation p.R57Q 0.37 tolerated(0.08) benign(0.238) TCGA-DU-6392-01 20 34446286 34446286 G A PHF20 Missense_Mutation p.A135T 0.31 deleterious(0.01) possibly_damaging(0.57) TCGA-DU-6392-01 20 34451299 34451299 G T PHF20 Missense_Mutation p.R262I 0.44 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 20 34828309 34828309 C T AAR2 Silent p.R173R 0.37 TCGA-DU-6392-01 20 35155232 35155232 C T DLGAP4 Missense_Mutation p.P923L 0.50 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 35262913 35262913 C T SLA2 Silent p.E57E 0.23 TCGA-DU-6392-01 20 35335406 35335406 C T NDRG3 Missense_Mutation p.G21D 0.09 tolerated(0.38) benign(0.066) TCGA-DU-6392-01 20 35559184 35559184 C T SAMHD1 Missense_Mutation p.A202T 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 20 35575193 35575193 C A SAMHD1 Missense_Mutation p.G75C 0.21 deleterious(0.01) probably_damaging(0.949) TCGA-DU-6392-01 20 35627269 35627269 C A RBL1 Missense_Mutation p.A1034S 0.21 tolerated(1) benign(0.044) TCGA-DU-6392-01 20 35672549 35672549 G A RBL1 Silent p.H570H 0.46 TCGA-DU-6392-01 20 35672579 35672579 T G RBL1 Missense_Mutation p.E560D 0.36 deleterious(0) possibly_damaging(0.761) TCGA-DU-6392-01 20 35748188 35748188 G T MROH8 Silent p.R788R 0.13 TCGA-DU-6392-01 20 35812582 35812582 G T RPN2 Splice_Site p.X5_splice 0.33 TCGA-DU-6392-01 20 35884894 35884894 G A GHRH Missense_Mutation p.R31W 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 36147459 36147459 G A BLCAP Missense_Mutation p.R40W 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 20 36151087 36151087 C T NNAT Nonsense_Mutation p.Q58* 0.36 TCGA-DU-6392-01 20 3649492 3649492 G T ADAM33 3'UTR 0.42 TCGA-DU-6392-01 20 3652086 3652086 T C ADAM33 Missense_Mutation p.T655A 0.08 tolerated(0.83) benign(0.002) TCGA-DU-6392-01 20 3653192 3653192 G A ADAM33 Missense_Mutation p.R465C 0.40 deleterious(0.04) possibly_damaging(0.832) TCGA-DU-6392-01 20 3654742 3654742 C T ADAM33 Missense_Mutation p.R236H 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 3660180 3660180 G T ADAM33 Missense_Mutation p.L46M 0.50 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6392-01 20 36640081 36640081 G T TTI1 Missense_Mutation p.P713H 0.16 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 20 3670648 3670648 G T SIGLEC1 Missense_Mutation p.L1619M 0.47 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 20 3682141 3682141 C A SIGLEC1 Missense_Mutation p.S459I 0.44 deleterious(0.04) benign(0.197) TCGA-DU-6392-01 20 36841593 36841593 G A KIAA1755 Missense_Mutation p.H1152Y 0.46 tolerated(0.38) benign(0.116) TCGA-DU-6392-01 20 3684577 3684577 G A SIGLEC1 Silent p.L290L 0.38 TCGA-DU-6392-01 20 36846682 36846682 G T KIAA1755 Silent p.A881A 0.16 TCGA-DU-6392-01 20 36869797 36869797 G A KIAA1755 Missense_Mutation p.P246S 0.42 deleterious(0) possibly_damaging(0.838) TCGA-DU-6392-01 20 36936031 36936031 T C BPI Missense_Mutation p.S69P 0.32 deleterious(0.03) benign(0.39) TCGA-DU-6392-01 20 36962871 36962871 A G BPI Missense_Mutation p.I442V 0.38 tolerated(0.13) benign(0) TCGA-DU-6392-01 20 36992702 36992702 G T LBP Missense_Mutation p.M242I 0.41 tolerated(0.42) benign(0.006) TCGA-DU-6392-01 20 37117086 37117086 A G RALGAPB Missense_Mutation p.E4G 0.13 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 20 3734741 3734741 G A C20orf27 Silent p.Y188Y 0.44 TCGA-DU-6392-01 20 37529326 37529326 G T PPP1R16B Missense_Mutation p.Q190H 0.48 deleterious(0.02) possibly_damaging(0.862) TCGA-DU-6392-01 20 37547381 37547381 C T PPP1R16B 3'UTR 0.40 TCGA-DU-6392-01 20 37617553 37617553 G T DHX35 Missense_Mutation p.R148I 0.31 deleterious(0) possibly_damaging(0.769) TCGA-DU-6392-01 20 37634834 37634834 G A DHX35 Missense_Mutation p.G353S 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 3835383 3835383 G A MAVS Missense_Mutation p.D38N 0.41 deleterious(0) possibly_damaging(0.612) TCGA-DU-6392-01 20 3845045 3845045 C A MAVS Silent p.S256S 0.42 TCGA-DU-6392-01 20 3846354 3846354 G A MAVS Missense_Mutation p.A395T 0.64 tolerated(1) benign(0.016) TCGA-DU-6392-01 20 3904064 3904064 T C PANK2 3'UTR 0.21 TCGA-DU-6392-01 20 3925866 3925866 C A RNF24 Splice_Site p.X84_splice 0.42 TCGA-DU-6392-01 20 39788384 39788384 C T PLCG1 Missense_Mutation p.T119M 0.36 deleterious(0) probably_damaging(0.915) TCGA-DU-6392-01 20 39793914 39793914 C T PLCG1 Silent p.Y472Y 0.19 TCGA-DU-6392-01 20 39796515 39796515 T C PLCG1 Silent p.Y775Y 0.40 TCGA-DU-6392-01 20 40033814 40033814 G T CHD6 Missense_Mutation p.P2523T 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 20 40050062 40050062 G T CHD6 Nonsense_Mutation p.S1738* 0.55 TCGA-DU-6392-01 20 40141510 40141510 G A CHD6 Missense_Mutation p.A276V 0.34 tolerated(0.09) benign(0.212) TCGA-DU-6392-01 20 40141613 40141613 C A CHD6 Missense_Mutation p.V242L 0.09 deleterious(0.03) possibly_damaging(0.701) TCGA-DU-6392-01 20 40162052 40162052 G T CHD6 Missense_Mutation p.A64D 0.10 tolerated_low_confidence(0.18) benign(0.06) TCGA-DU-6392-01 20 4163079 4163079 A G SMOX Missense_Mutation p.E318G 0.16 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 20 42164880 42164880 G A L3MBTL1 Missense_Mutation p.R668H 0.56 deleterious(0.03) benign(0.031) TCGA-DU-6392-01 20 42169611 42169611 C A L3MBTL1 Missense_Mutation p.T789N 0.14 tolerated_low_confidence(1) benign(0) TCGA-DU-6392-01 20 42194986 42194986 C T SGK2 Missense_Mutation p.P11S 0.41 tolerated_low_confidence(0.51) possibly_damaging(0.641) TCGA-DU-6392-01 20 42213499 42213499 C A SGK2 Missense_Mutation p.P376H 0.25 deleterious(0.04) benign(0.414) TCGA-DU-6392-01 20 42232516 42232516 C T IFT52 Silent p.I108I 0.36 TCGA-DU-6392-01 20 42344668 42344668 C T MYBL2 Missense_Mutation p.R682W 0.35 deleterious(0) probably_damaging(0.955) TCGA-DU-6392-01 20 42355251 42355251 C T GTSF1L Silent p.S28S 0.32 TCGA-DU-6392-01 20 42826274 42826274 C T OSER1 Silent p.A99A 0.37 TCGA-DU-6392-01 20 43030050 43030050 C T HNF4A Missense_Mutation p.A13V 0.09 deleterious(0.02) probably_damaging(0.993) TCGA-DU-6392-01 20 43113129 43113129 T - TTPAL Frame_Shift_Del p.F200Lfs*5 0.09 TCGA-DU-6392-01 20 43141617 43141617 C A SERINC3 Missense_Mutation p.G74W 0.29 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 20 43249743 43249743 C T ADA Silent p.P297P 0.47 TCGA-DU-6392-01 20 43251484 43251484 T G ADA Missense_Mutation p.N256H 0.32 deleterious(0.04) benign(0.032) TCGA-DU-6392-01 20 43374622 43374622 C A KCNK15 Missense_Mutation p.A24D 0.56 deleterious(0) probably_damaging(0.971) TCGA-DU-6392-01 20 43561799 43561799 C T PABPC1L Missense_Mutation p.R473C 0.47 deleterious(0.03) benign(0.003) TCGA-DU-6392-01 20 43580536 43580536 G A TOMM34 Missense_Mutation p.S163L 0.36 tolerated(0.09) benign(0.004) TCGA-DU-6392-01 20 43580603 43580603 G A TOMM34 Missense_Mutation p.R141C 0.26 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 43836470 43836470 G A SEMG1 Missense_Mutation p.V178I 0.09 tolerated(0.41) benign(0.343) TCGA-DU-6392-01 20 43926866 43926866 G A MATN4 Missense_Mutation p.T457M 0.39 probably_damaging(0.999) TCGA-DU-6392-01 20 43926995 43926995 G A MATN4 Missense_Mutation p.A414V 0.46 possibly_damaging(0.535) TCGA-DU-6392-01 20 43933260 43933260 C A MATN4 Missense_Mutation p.S84I 0.21 possibly_damaging(0.66) TCGA-DU-6392-01 20 43944893 43944893 G A RBPJL Missense_Mutation p.G363S 0.32 tolerated(1) possibly_damaging(0.795) TCGA-DU-6392-01 20 43955808 43955808 G T SDC4 3'UTR 0.31 TCGA-DU-6392-01 20 43995598 43995598 G A SYS1 Missense_Mutation p.G105D 0.41 tolerated(0.11) benign(0.285) TCGA-DU-6392-01 20 44047956 44047956 G A PIGT Missense_Mutation p.R172H 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 44351048 44351048 C A SPINT4 Silent p.I14I 0.28 TCGA-DU-6392-01 20 44430695 44430695 G A DNTTIP1 Missense_Mutation p.V186I 0.32 tolerated(0.24) benign(0.108) TCGA-DU-6392-01 20 44439805 44439805 C T DNTTIP1 Missense_Mutation p.R321C 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.528) TCGA-DU-6392-01 20 44463100 44463100 A G SNX21 Silent p.E94E 0.29 TCGA-DU-6392-01 20 44506742 44506742 G A ZSWIM3 Silent p.E515E 0.35 TCGA-DU-6392-01 20 44511609 44511609 C T ZSWIM1 Silent p.A126A 0.41 TCGA-DU-6392-01 20 44576240 44576240 C T PCIF1 Missense_Mutation p.A654V 0.26 tolerated(0.09) benign(0) TCGA-DU-6392-01 20 44576322 44576322 G A PCIF1 Silent p.S681S 0.61 TCGA-DU-6392-01 20 44581339 44581339 G A ZNF335 Silent p.P904P 0.43 TCGA-DU-6392-01 20 44588001 44588001 G A ZNF335 Missense_Mutation p.R698W 0.33 deleterious(0) probably_damaging(0.918) TCGA-DU-6392-01 20 44590717 44590717 G A ZNF335 Silent p.S546S 0.36 TCGA-DU-6392-01 20 44596062 44596062 C T ZNF335 Intron 0.20 TCGA-DU-6392-01 20 44640806 44640806 C T MMP9 Missense_Mutation p.A343V 0.32 deleterious(0.01) benign(0.047) TCGA-DU-6392-01 20 44665968 44665968 C T SLC12A5 Silent p.L209L 0.31 TCGA-DU-6392-01 20 44666019 44666019 C A SLC12A5 Missense_Mutation p.L226M 0.29 deleterious(0.02) probably_damaging(0.981) TCGA-DU-6392-01 20 44674605 44674605 C T SLC12A5 Missense_Mutation p.S576F 0.32 deleterious(0.02) probably_damaging(0.954) TCGA-DU-6392-01 20 44683580 44683580 C T SLC12A5 Missense_Mutation p.T925I 0.27 deleterious(0) possibly_damaging(0.821) TCGA-DU-6392-01 20 44691373 44691373 G T NCOA5 Missense_Mutation p.L436I 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-DU-6392-01 20 44692146 44692146 G A NCOA5 Missense_Mutation p.R335C 0.40 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 20 44746989 44746989 C T CD40 Missense_Mutation p.R3C 0.43 tolerated(0.05) benign(0.025) TCGA-DU-6392-01 20 44983845 44983845 G A SLC35C2 Silent p.A148A 0.31 TCGA-DU-6392-01 20 45000096 45000096 G A ELMO2 Missense_Mutation p.R566W 0.48 deleterious(0) possibly_damaging(0.753) TCGA-DU-6392-01 20 45130708 45130708 G A ZNF334 Nonsense_Mutation p.R424* 0.38 TCGA-DU-6392-01 20 45131588 45131588 T G ZNF334 Missense_Mutation p.R130S 0.34 tolerated(0.41) benign(0.018) TCGA-DU-6392-01 20 45353792 45353793 - T SLC2A10 Frame_Shift_Ins p.G41Wfs*30 0.10 TCGA-DU-6392-01 20 45809567 45809567 A G EYA2 Missense_Mutation p.Y473C 0.65 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 46292287 46292287 G A SULF2 Missense_Mutation p.R713C 0.39 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 20 46318928 46318928 C T SULF2 Missense_Mutation p.G227S 0.43 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 20 469369 469369 G A CSNK2A1 Silent p.D259D 0.14 TCGA-DU-6392-01 20 47242458 47242458 G A PREX1 Missense_Mutation p.R1649C 0.42 tolerated(0.08) benign(0.008) TCGA-DU-6392-01 20 47242464 47242464 G T PREX1 Missense_Mutation p.L1647I 0.36 deleterious(0.04) benign(0.007) TCGA-DU-6392-01 20 47269912 47269912 C T PREX1 Missense_Mutation p.R778H 0.39 tolerated(0.07) benign(0.001) TCGA-DU-6392-01 20 47309244 47309244 T G PREX1 Missense_Mutation p.E334D 0.14 tolerated(0.18) probably_damaging(0.999) TCGA-DU-6392-01 20 47736634 47736634 G A STAU1 Missense_Mutation p.T333M 0.10 tolerated(0.42) benign(0.003) TCGA-DU-6392-01 20 4776463 4776463 C T RASSF2 Silent p.Q95Q 0.35 TCGA-DU-6392-01 20 47850160 47850160 G A DDX27 Missense_Mutation p.S427N 0.29 tolerated(0.3) benign(0.298) TCGA-DU-6392-01 20 47858511 47858512 - G DDX27 Frame_Shift_Ins p.E693Gfs*11 0.30 TCGA-DU-6392-01 20 47865567 47865567 G A ZNFX1 Missense_Mutation p.R1332W 0.49 deleterious(0) possibly_damaging(0.863) TCGA-DU-6392-01 20 47868156 47868156 G A ZNFX1 Missense_Mutation p.R1074C 0.23 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 48140673 48140673 G A PTGIS Silent p.Y259Y 0.34 TCGA-DU-6392-01 20 4837827 4837827 G A SLC23A2 Missense_Mutation p.R582W 0.33 deleterious(0.04) benign(0.306) TCGA-DU-6392-01 20 48522081 48522081 C T SPATA2 3'UTR 0.44 TCGA-DU-6392-01 20 4864408 4864408 G T SLC23A2 Missense_Mutation p.P235H 0.10 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 20 48699376 48699376 G A UBE2V1 Missense_Mutation p.R148W 0.41 deleterious(0.04) benign(0.374) TCGA-DU-6392-01 20 48760145 48760145 C A TMEM189-UBE2V1 Missense_Mutation p.Q45H 0.38 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-DU-6392-01 20 49247380 49247380 G A FAM65C Missense_Mutation p.S2L 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 49508536 49508536 G A ADNP Silent p.N905N 0.40 TCGA-DU-6392-01 20 49562425 49562425 C A DPM1 Nonsense_Mutation p.G111* 0.38 TCGA-DU-6392-01 20 49620539 49620539 C T KCNG1 3'UTR 0.14 TCGA-DU-6392-01 20 50071118 50071118 C T NFATC2 Missense_Mutation p.E606K 0.42 deleterious(0) possibly_damaging(0.889) TCGA-DU-6392-01 20 50140512 50140512 C A NFATC2 Missense_Mutation p.D90Y 0.11 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 20 50221543 50221543 G A ATP9A Silent p.Y940Y 0.48 TCGA-DU-6392-01 20 50292706 50292706 G A ATP9A Missense_Mutation p.R281W 0.12 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 20 50401032 50401032 G A SALL4 Silent p.G978G 0.27 TCGA-DU-6392-01 20 50406792 50406792 G A SALL4 Nonsense_Mutation p.Q744* 0.37 TCGA-DU-6392-01 20 50769213 50769213 G A ZFP64 Silent p.P506P 0.45 TCGA-DU-6392-01 20 5155838 5155838 C T CDS2 Silent p.N68N 0.37 TCGA-DU-6392-01 20 5159552 5159552 G A CDS2 Missense_Mutation p.R160Q 0.33 tolerated(0.91) benign(0.016) TCGA-DU-6392-01 20 52198661 52198661 G A ZNF217 Silent p.R235R 0.30 TCGA-DU-6392-01 20 52198934 52198934 C A ZNF217 Missense_Mutation p.E144D 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 20 54573504 54573504 C T CBLN4 3'UTR 0.36 TCGA-DU-6392-01 20 54961320 54961320 C T AURKA Silent p.S104S 0.12 TCGA-DU-6392-01 20 55099783 55099783 C T FAM209A 5'UTR 0.34 TCGA-DU-6392-01 20 5560710 5560710 A C GPCPD1 Nonsense_Mutation p.Y139* 0.46 TCGA-DU-6392-01 20 55982762 55982762 G A RBM38 Missense_Mutation p.A194T 0.53 deleterious(0.03) benign(0.006) TCGA-DU-6392-01 20 56094301 56094301 G A CTCFL Missense_Mutation p.T296M 0.42 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 20 56136466 56136466 A T PCK1 5'UTR 0.24 TCGA-DU-6392-01 20 56137900 56137900 C T PCK1 Silent p.G185G 0.24 TCGA-DU-6392-01 20 56138777 56138777 G A PCK1 Missense_Mutation p.A319T 0.37 tolerated(0.09) benign(0.002) TCGA-DU-6392-01 20 56140474 56140474 G A PCK1 Missense_Mutation p.A495T 0.48 tolerated(0.27) benign(0.005) TCGA-DU-6392-01 20 57393338 57393338 G A MIR298 RNA 0.23 TCGA-DU-6392-01 20 57415634 57415634 C T RP4-806M20.3 5'Flank 0.50 TCGA-DU-6392-01 20 57561832 57561832 C T NELFCD Missense_Mutation p.P85L 0.10 deleterious(0.02) possibly_damaging(0.776) TCGA-DU-6392-01 20 57568587 57568587 C T NELFCD Silent p.D494D 0.37 TCGA-DU-6392-01 20 57610078 57610078 G A SLMO2 Missense_Mutation p.A190V 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.716) TCGA-DU-6392-01 20 57766569 57766569 C A ZNF831 Silent p.S165S 0.26 TCGA-DU-6392-01 20 57767536 57767536 G A ZNF831 Missense_Mutation p.V488I 0.39 tolerated(0.05) benign(0.068) TCGA-DU-6392-01 20 57767778 57767778 G T ZNF831 Missense_Mutation p.E568D 0.55 tolerated(0.11) benign(0.115) TCGA-DU-6392-01 20 57768129 57768129 C T ZNF831 Silent p.S685S 0.24 TCGA-DU-6392-01 20 58342331 58342331 C T PHACTR3 Missense_Mutation p.A211V 0.14 tolerated(0.26) benign(0.021) TCGA-DU-6392-01 20 58448959 58448959 G T SYCP2 Missense_Mutation p.F1169L 0.16 tolerated(1) benign(0) TCGA-DU-6392-01 20 58520077 58520077 G A FAM217B Missense_Mutation p.G360D 0.09 tolerated(0.15) possibly_damaging(0.613) TCGA-DU-6392-01 20 5897001 5897001 A T CHGB Missense_Mutation p.N27Y 0.31 deleterious(0) probably_damaging(0.968) TCGA-DU-6392-01 20 5922666 5922666 C A TRMT6 Missense_Mutation p.R348M 0.11 tolerated(0.11) benign(0.04) TCGA-DU-6392-01 20 5948125 5948125 A G MCM8 Missense_Mutation p.I307V 0.08 tolerated(0.64) probably_damaging(0.992) TCGA-DU-6392-01 20 5948475 5948475 G A MCM8 Splice_Site p.X343_splice 0.21 TCGA-DU-6392-01 20 5974203 5974203 C A MCM8 Silent p.S764S 0.09 TCGA-DU-6392-01 20 6022181 6022181 G A LRRN4 Silent p.C570C 0.35 TCGA-DU-6392-01 20 6022650 6022650 G A LRRN4 Missense_Mutation p.S414F 0.42 deleterious(0.01) probably_damaging(0.91) TCGA-DU-6392-01 20 6022760 6022760 G T LRRN4 Nonsense_Mutation p.C377* 0.34 TCGA-DU-6392-01 20 6031520 6031520 C T LRRN4 Silent p.L255L 0.39 TCGA-DU-6392-01 20 60427860 60427860 C T CDH4 Silent p.I261I 0.36 TCGA-DU-6392-01 20 60575310 60575310 C T TAF4 Missense_Mutation p.G886D 0.41 probably_damaging(0.999) TCGA-DU-6392-01 20 60575608 60575608 C A TAF4 Missense_Mutation p.G886C 0.08 probably_damaging(1) TCGA-DU-6392-01 20 6068529 6068529 G A FERMT1 Silent p.G422G 0.37 TCGA-DU-6392-01 20 60859101 60859101 G T OSBPL2 Splice_Site p.X291_splice 0.43 TCGA-DU-6392-01 20 60881369 60881369 G A ADRM1 Silent p.A149A 0.10 TCGA-DU-6392-01 20 60883825 60883825 G A ADRM1 3'UTR 0.32 TCGA-DU-6392-01 20 60887030 60887030 G A LAMA5 Missense_Mutation p.A3194V 0.38 benign(0.016) TCGA-DU-6392-01 20 60887095 60887095 G T LAMA5 Nonsense_Mutation p.C3172* 0.08 TCGA-DU-6392-01 20 60898833 60898833 G A LAMA5 Missense_Mutation p.R1950W 0.36 possibly_damaging(0.672) TCGA-DU-6392-01 20 60902974 60902974 G A LAMA5 Missense_Mutation p.A1582V 0.30 benign(0.385) TCGA-DU-6392-01 20 60909037 60909037 C T LAMA5 Missense_Mutation p.R933Q 0.35 probably_damaging(0.986) TCGA-DU-6392-01 20 6096604 6096604 T C FERMT1 Missense_Mutation p.Y80C 0.45 tolerated(0.31) benign(0.005) TCGA-DU-6392-01 20 61143823 61143823 G T C20orf166 5'Flank 0.10 TCGA-DU-6392-01 20 61151535 61151535 G A C20orf166 Intron 0.40 TCGA-DU-6392-01 20 61291876 61291876 C T SLCO4A1 Nonsense_Mutation p.Q334* 0.53 TCGA-DU-6392-01 20 61299185 61299185 T G SLCO4A1 Missense_Mutation p.S521A 0.36 tolerated(0.71) benign(0.06) TCGA-DU-6392-01 20 61303353 61303353 C A SLCO4A1 3'UTR 0.60 TCGA-DU-6392-01 20 61391456 61391456 A G NTSR1 Missense_Mutation p.N365S 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-DU-6392-01 20 61442844 61442844 C T OGFR Missense_Mutation p.R166W 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 20 61458647 61458647 G A COL9A3 Splice_Site p.X282_splice 0.43 TCGA-DU-6392-01 20 61488955 61488955 G A TCFL5 Missense_Mutation p.R344W 0.37 deleterious(0.02) probably_damaging(0.947) TCGA-DU-6392-01 20 61512503 61512503 C A DIDO1 Missense_Mutation p.G1602V 0.27 benign(0.001) TCGA-DU-6392-01 20 61537085 61537085 C A DIDO1 Intron 0.59 TCGA-DU-6392-01 20 61574940 61574940 C T GID8 Nonsense_Mutation p.R137* 0.42 TCGA-DU-6392-01 20 61828083 61828083 G A YTHDF1 Missense_Mutation p.R553W 0.48 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DU-6392-01 20 61870847 61870847 G A BIRC7 Missense_Mutation p.V263I 0.33 deleterious(0.03) probably_damaging(0.972) TCGA-DU-6392-01 20 61880211 61880211 C T NKAIN4 Missense_Mutation p.V77I 0.34 tolerated(0.51) benign(0.026) TCGA-DU-6392-01 20 61937231 61937231 A G COL20A1 Splice_Site p.X113_splice 0.41 TCGA-DU-6392-01 20 61978114 61978114 C T CHRNA4 Silent p.P620P 0.29 TCGA-DU-6392-01 20 61981023 61981023 G A CHRNA4 Silent p.A580A 0.37 TCGA-DU-6392-01 20 61981752 61981752 C T CHRNA4 Silent p.T337T 0.40 TCGA-DU-6392-01 20 62071046 62071046 T C KCNQ2 Missense_Mutation p.I278V 0.40 tolerated(0.12) possibly_damaging(0.641) TCGA-DU-6392-01 20 62162171 62162171 G A PTK6 Silent p.A314A 0.43 TCGA-DU-6392-01 20 62172560 62172560 G T SRMS Silent p.G423G 0.45 TCGA-DU-6392-01 20 62178752 62178752 G A SRMS Missense_Mutation p.A22V 0.46 tolerated(0.38) benign(0.001) TCGA-DU-6392-01 20 62187216 62187216 G A C20orf195 Missense_Mutation p.R67H 0.45 tolerated(0.15) benign(0.091) TCGA-DU-6392-01 20 62187487 62187487 G A C20orf195 Silent p.A157A 0.37 TCGA-DU-6392-01 20 62187669 62187669 C T C20orf195 Missense_Mutation p.A218V 0.38 tolerated(0.87) benign(0.001) TCGA-DU-6392-01 20 62190668 62190668 G A HELZ2 Silent p.C2627C 0.43 TCGA-DU-6392-01 20 62192213 62192213 G T HELZ2 Missense_Mutation p.L2406M 0.08 tolerated(1) benign(0.225) TCGA-DU-6392-01 20 62193506 62193506 G A HELZ2 Missense_Mutation p.R2150C 0.38 tolerated(0.22) benign(0) TCGA-DU-6392-01 20 62198524 62198524 G A HELZ2 Silent p.H729H 0.11 TCGA-DU-6392-01 20 62200916 62200916 G A HELZ2 Missense_Mutation p.R225C 0.50 tolerated(0.09) possibly_damaging(0.891) TCGA-DU-6392-01 20 62293280 62293280 C T RTEL1 Missense_Mutation p.R127W 0.09 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 20 62329814 62329814 G A TNFRSF6B Silent p.A267A 0.45 TCGA-DU-6392-01 20 62372699 62372699 G A SLC2A4RG Intron 0.32 TCGA-DU-6392-01 20 62374245 62374245 G A SLC2A4RG Missense_Mutation p.D356N 0.29 deleterious(0) probably_damaging(0.929) TCGA-DU-6392-01 20 62374307 62374307 C T SLC2A4RG Silent p.C376C 0.53 TCGA-DU-6392-01 20 62378406 62378406 G A ZBTB46 Silent p.G549G 0.36 TCGA-DU-6392-01 20 62384176 62384176 G T ZBTB46 Missense_Mutation p.P421T 0.39 deleterious(0.01) benign(0.125) TCGA-DU-6392-01 20 62421634 62421634 C T ZBTB46 Silent p.S159S 0.30 TCGA-DU-6392-01 20 62577807 62577807 G A UCKL1 Silent p.I101I 0.33 TCGA-DU-6392-01 20 62591493 62591493 C A ZNF512B Splice_Site p.X810_splice 0.37 TCGA-DU-6392-01 20 62597978 62597978 G A ZNF512B Missense_Mutation p.R184W 0.39 tolerated_low_confidence(0.07) probably_damaging(0.918) TCGA-DU-6392-01 20 62608449 62608449 G A SAMD10 Missense_Mutation p.S107L 0.25 deleterious(0.05) benign(0.006) TCGA-DU-6392-01 20 62658381 62658381 G T PRPF6 Missense_Mutation p.R692M 0.29 deleterious(0.03) benign(0.057) TCGA-DU-6392-01 20 62701576 62701576 G A TCEA2 Intron 0.34 TCGA-DU-6392-01 20 62705620 62705620 G A RGS19 Silent p.S113S 0.26 TCGA-DU-6392-01 20 62705659 62705659 T C RGS19 Silent p.G100G 0.19 TCGA-DU-6392-01 20 62729242 62729242 G T OPRL1 Missense_Mutation p.Q107H 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 20 62737922 62737922 G A NPBWR2 Missense_Mutation p.A88V 0.40 deleterious(0.02) possibly_damaging(0.815) TCGA-DU-6392-01 20 62854707 62854707 C T MYT1 Silent p.D841D 0.42 TCGA-DU-6392-01 20 644558 644558 C T SCRT2 Silent p.L227L 0.36 TCGA-DU-6392-01 20 7980487 7980487 C T TMX4 Missense_Mutation p.R120H 0.32 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 20 853509 853509 C T ANGPT4 3'UTR 0.17 TCGA-DU-6392-01 20 868969 868969 G A ANGPT4 Silent p.G193G 0.31 TCGA-DU-6392-01 20 896548 896548 C T ANGPT4 Splice_Site p.X103_splice 0.48 TCGA-DU-6392-01 20 896851 896851 A T ANGPT4 Missense_Mutation p.S3T 0.16 tolerated(0.12) benign(0.202) TCGA-DU-6392-01 20 9424888 9424888 A T PLCB4 Nonsense_Mutation p.K948* 0.12 TCGA-DU-6392-01 20 9496681 9496681 G A LAMP5 Missense_Mutation p.R91Q 0.41 deleterious(0.05) probably_damaging(0.996) TCGA-DU-6392-01 20 9510426 9510426 C T LAMP5 Nonsense_Mutation p.Q268* 0.32 TCGA-DU-6392-01 20 9525092 9525092 G A PAK7 Missense_Mutation p.P598L 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 21 10933894 10933894 C A TPTE Missense_Mutation p.D329Y 0.16 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 21 11038775 11038775 C A BAGE2 RNA 0.07 TCGA-DU-6392-01 21 11038962 11038962 C T BAGE2 RNA 0.06 TCGA-DU-6392-01 21 11049593 11049593 G A BAGE2 RNA 0.07 TCGA-DU-6392-01 21 15326399 15326399 C T ANKRD20A11P RNA 0.38 TCGA-DU-6392-01 21 15561361 15561362 - T LIPI Frame_Shift_Ins p.N163Kfs*10 0.26 TCGA-DU-6392-01 21 16338404 16338404 C A NRIP1 Nonsense_Mutation p.E704* 0.37 TCGA-DU-6392-01 21 17246800 17246800 A G USP25 Silent p.G918G 0.45 TCGA-DU-6392-01 21 17246839 17246839 T C USP25 Silent p.C931C 0.09 TCGA-DU-6392-01 21 18919457 18919457 G A CXADR Silent p.P52P 0.53 TCGA-DU-6392-01 21 18977277 18977277 T G BTG3 Missense_Mutation p.D71A 0.23 tolerated(0.34) benign(0.137) TCGA-DU-6392-01 21 19653381 19653381 G A TMPRSS15 Silent p.L882L 0.35 TCGA-DU-6392-01 21 19653399 19653399 C T TMPRSS15 Missense_Mutation p.D876N 0.37 deleterious(0) probably_damaging(0.979) TCGA-DU-6392-01 21 19685272 19685272 G T TMPRSS15 Missense_Mutation p.L719M 0.46 deleterious(0.02) possibly_damaging(0.802) TCGA-DU-6392-01 21 26972178 26972178 A G MRPL39 Missense_Mutation p.V174A 0.32 deleterious(0.02) possibly_damaging(0.883) TCGA-DU-6392-01 21 26978878 26978878 G A MRPL39 Nonsense_Mutation p.Q55* 0.31 TCGA-DU-6392-01 21 27074497 27074497 T C JAM2 Missense_Mutation p.S205P 0.32 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 21 27074552 27074552 G A JAM2 Missense_Mutation p.R223H 0.38 deleterious(0.05) benign(0.033) TCGA-DU-6392-01 21 27117541 27117541 C T GABPA Missense_Mutation p.A33V 0.24 tolerated(0.07) benign(0.015) TCGA-DU-6392-01 21 27124333 27124333 T G GABPA Missense_Mutation p.V114G 0.33 deleterious(0) possibly_damaging(0.845) TCGA-DU-6392-01 21 27372368 27372368 T C APP Missense_Mutation p.D332G 0.56 tolerated(0.18) benign(0.075) TCGA-DU-6392-01 21 27945278 27945278 G A CYYR1 5'UTR 0.31 TCGA-DU-6392-01 21 28210177 28210177 C A ADAMTS1 Missense_Mutation p.Q875H 0.18 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 21 28338243 28338243 G A ADAMTS5 Silent p.F156F 0.26 TCGA-DU-6392-01 21 28338410 28338410 C A ADAMTS5 Missense_Mutation p.D101Y 0.43 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 21 30248595 30248595 T - N6AMT1 3'UTR 0.43 TCGA-DU-6392-01 21 30302707 30302707 A G LTN1 3'UTR 0.30 TCGA-DU-6392-01 21 30330708 30330708 C A LTN1 Missense_Mutation p.S962I 0.39 deleterious(0) probably_damaging(0.948) TCGA-DU-6392-01 21 30343762 30343762 C T LTN1 Missense_Mutation p.R318H 0.46 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 21 30378931 30378931 C T RWDD2B Missense_Mutation p.R256Q 0.24 deleterious(0.01) possibly_damaging(0.842) TCGA-DU-6392-01 21 30380627 30380627 G A RWDD2B Missense_Mutation p.A99V 0.53 tolerated(1) benign(0.002) TCGA-DU-6392-01 21 30426427 30426427 C T USP16 Silent p.S797S 0.33 TCGA-DU-6392-01 21 30426568 30426568 C T USP16 3'UTR 0.32 TCGA-DU-6392-01 21 30432936 30432936 C A CCT8 Missense_Mutation p.D499Y 0.38 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 21 30439249 30439249 A G CCT8 Silent p.N175N 0.19 TCGA-DU-6392-01 21 30521514 30521514 T C MAP3K7CL Silent p.D125D 0.31 TCGA-DU-6392-01 21 30532336 30532336 C T MAP3K7CL Silent p.Y169Y 0.38 TCGA-DU-6392-01 21 30701893 30701893 C A BACH1 Missense_Mutation p.P552Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 21 30909580 30909580 G A GRIK1 Nonsense_Mutation p.R941* 0.28 TCGA-DU-6392-01 21 30925998 30925998 A G GRIK1 Missense_Mutation p.C879R 0.08 deleterious(0.02) benign(0.015) TCGA-DU-6392-01 21 31045367 31045367 T C GRIK1 Missense_Mutation p.K221R 0.33 tolerated(0.88) benign(0.003) TCGA-DU-6392-01 21 31588194 31588194 C T CLDN8 Missense_Mutation p.G17E 0.27 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 21 31852407 31852407 C T KRTAP19-1 Missense_Mutation p.R77H 0.47 tolerated_low_confidence(0.37) unknown(0) TCGA-DU-6392-01 21 31859657 31859657 C T KRTAP19-2 Missense_Mutation p.G4D 0.07 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 21 31863841 31863841 G A KRTAP19-3 3'UTR 0.15 TCGA-DU-6392-01 21 32410562 32410562 G A KRTAP19-8 3'UTR 0.31 TCGA-DU-6392-01 21 32410773 32410773 C T KRTAP19-8 5'UTR 0.42 TCGA-DU-6392-01 21 32502548 32502548 C T TIAM1 Missense_Mutation p.R1343Q 0.32 deleterious(0) possibly_damaging(0.85) TCGA-DU-6392-01 21 33063198 33063198 A G SCAF4 Silent p.V599V 0.38 TCGA-DU-6392-01 21 33073349 33073349 C A SCAF4 Missense_Mutation p.A246S 0.38 benign(0.228) TCGA-DU-6392-01 21 33074144 33074144 C T SCAF4 Missense_Mutation p.S182N 0.42 benign(0.056) TCGA-DU-6392-01 21 33371473 33371473 C T HUNK Silent p.A707A 0.29 TCGA-DU-6392-01 21 33829975 33829975 A G EVA1C Missense_Mutation p.D143G 0.44 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 21 33974429 33974429 C A C21orf59 Intron 0.42 TCGA-DU-6392-01 21 34018894 34018894 C A SYNJ1 Missense_Mutation p.S1058I 0.54 deleterious(0.02) possibly_damaging(0.462) TCGA-DU-6392-01 21 34045776 34045776 G A SYNJ1 Nonsense_Mutation p.R573* 0.09 TCGA-DU-6392-01 21 34072157 34072157 C A SYNJ1 Missense_Mutation p.R196I 0.30 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 21 34074316 34074316 C T SYNJ1 Missense_Mutation p.V95I 0.36 tolerated(0.39) benign(0.169) TCGA-DU-6392-01 21 34134482 34134482 C A PAXBP1 Missense_Mutation p.D266Y 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-DU-6392-01 21 34660531 34660531 T G IL10RB Missense_Mutation p.S257A 0.39 tolerated(0.49) benign(0.001) TCGA-DU-6392-01 21 34804627 34804627 C T IFNGR2 Silent p.Y235Y 0.42 TCGA-DU-6392-01 21 34900595 34900595 G A GART Missense_Mutation p.S315F 0.35 deleterious(0.01) possibly_damaging(0.835) TCGA-DU-6392-01 21 34907045 34907045 G T GART Missense_Mutation p.L86M 0.30 deleterious(0.02) probably_damaging(0.959) TCGA-DU-6392-01 21 34939572 34939572 G T SON Missense_Mutation p.R2256M 0.18 unknown(0) TCGA-DU-6392-01 21 34975779 34975779 G T CRYZL1 Silent p.A132A 0.07 TCGA-DU-6392-01 21 35169735 35169735 G A ITSN1 Missense_Mutation p.E669K 0.09 tolerated(0.13) benign(0.122) TCGA-DU-6392-01 21 35186340 35186340 G A ITSN1 Silent p.T897T 0.40 TCGA-DU-6392-01 21 35208937 35208937 G A ITSN1 Splice_Site p.X1221_splice 0.28 TCGA-DU-6392-01 21 35468352 35468352 G A SLC5A3 Silent p.R285R 0.42 TCGA-DU-6392-01 21 35468499 35468499 G T SLC5A3 Missense_Mutation p.E334D 0.51 tolerated(0.43) benign(0.101) TCGA-DU-6392-01 21 35468959 35468959 G A SLC5A3 Missense_Mutation p.A488T 0.35 tolerated(0.06) benign(0.01) TCGA-DU-6392-01 21 35890511 35890511 G A RCAN1 Silent p.S210S 0.35 TCGA-DU-6392-01 21 36228737 36228737 C T RUNX1 Intron 0.19 TCGA-DU-6392-01 21 36259226 36259226 G A RUNX1 Silent p.L89L 0.30 TCGA-DU-6392-01 21 37510183 37510183 C T CBR3 Missense_Mutation p.A117V 0.36 deleterious(0) possibly_damaging(0.63) TCGA-DU-6392-01 21 37518818 37518818 C T CBR3 3'UTR 0.27 TCGA-DU-6392-01 21 37583875 37583875 T C DOPEY2 Silent p.L236L 0.37 TCGA-DU-6392-01 21 37618055 37618055 C T DOPEY2 Silent p.I1259I 0.40 TCGA-DU-6392-01 21 37618224 37618224 A G DOPEY2 Missense_Mutation p.T1316A 0.34 deleterious(0.01) benign(0.206) TCGA-DU-6392-01 21 37710068 37710068 T C MORC3 Missense_Mutation p.V95A 0.42 tolerated(0.13) probably_damaging(0.95) TCGA-DU-6392-01 21 37710107 37710107 C A MORC3 Missense_Mutation p.S108Y 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 21 37736539 37736539 C A MORC3 Missense_Mutation p.S534Y 0.13 deleterious(0.01) benign(0.372) TCGA-DU-6392-01 21 37747701 37747701 C A MORC3 3'UTR 0.56 TCGA-DU-6392-01 21 38095361 38095361 G T SIM2 Missense_Mutation p.R158M 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6392-01 21 38128859 38128859 G A HLCS Nonsense_Mutation p.R665* 0.39 TCGA-DU-6392-01 21 38128917 38128917 C A HLCS Missense_Mutation p.E645D 0.40 deleterious(0.04) probably_damaging(0.991) TCGA-DU-6392-01 21 38309032 38309032 G A HLCS Missense_Mutation p.S238F 0.44 deleterious(0) possibly_damaging(0.732) TCGA-DU-6392-01 21 38309235 38309235 G A HLCS Silent p.S170S 0.41 TCGA-DU-6392-01 21 38390258 38390258 G A RIPPLY3 Silent p.T108T 0.44 TCGA-DU-6392-01 21 38560897 38560897 G A TTC3 Splice_Site p.X1675_splice 0.28 TCGA-DU-6392-01 21 38569870 38569870 G T TTC3 Splice_Site p.X1860_splice 0.29 TCGA-DU-6392-01 21 39087049 39087049 G A KCNJ6 Silent p.N137N 0.34 TCGA-DU-6392-01 21 39580414 39580414 C A DSCR10 RNA 0.07 TCGA-DU-6392-01 21 40568686 40568686 G T BRWD1 Silent p.T2103T 0.06 TCGA-DU-6392-01 21 40572205 40572205 C T BRWD1 Missense_Mutation p.G1565R 0.34 tolerated(0.06) benign(0.039) TCGA-DU-6392-01 21 40578093 40578093 G C BRWD1 Missense_Mutation p.S1435R 0.41 tolerated(0.13) probably_damaging(0.986) TCGA-DU-6392-01 21 40587227 40587227 C T BRWD1 Missense_Mutation p.E1241K 0.50 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 21 40610438 40610438 T C BRWD1 Missense_Mutation p.D848G 0.40 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 21 40630542 40630542 G A BRWD1 Missense_Mutation p.R648C 0.39 deleterious(0.02) benign(0.425) TCGA-DU-6392-01 21 40714987 40714987 A G HMGN1 3'UTR 0.51 TCGA-DU-6392-01 21 40765207 40765207 G A WRB Splice_Site p.X151_splice 0.41 TCGA-DU-6392-01 21 40795308 40795308 A G LCA5L Missense_Mutation p.L144P 0.34 deleterious(0.01) probably_damaging(0.986) TCGA-DU-6392-01 21 40800154 40800154 A G LCA5L Missense_Mutation p.V89A 0.37 tolerated(0.42) benign(0.013) TCGA-DU-6392-01 21 40847093 40847093 G T SH3BGR Missense_Mutation p.E151D 0.08 tolerated(0.36) benign(0.055) TCGA-DU-6392-01 21 41032932 41032932 C T B3GALT5 Missense_Mutation p.A149V 0.42 tolerated(0.12) benign(0.045) TCGA-DU-6392-01 21 41033236 41033236 C T B3GALT5 Silent p.L250L 0.44 TCGA-DU-6392-01 21 41384892 41384893 - A DSCAM 3'UTR 0.40 TCGA-DU-6392-01 21 41385262 41385262 C T DSCAM Missense_Mutation p.R1913Q 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.489) TCGA-DU-6392-01 21 41452189 41452189 C T DSCAM Missense_Mutation p.R1437H 0.34 deleterious(0.03) probably_damaging(0.982) TCGA-DU-6392-01 21 41465683 41465683 C A DSCAM Missense_Mutation p.S1272I 0.44 tolerated(0.25) benign(0.021) TCGA-DU-6392-01 21 41710040 41710040 C T DSCAM Missense_Mutation p.V591M 0.33 deleterious(0) possibly_damaging(0.682) TCGA-DU-6392-01 21 42609525 42609525 G A BACE2 Missense_Mutation p.V163I 0.30 tolerated(0.22) benign(0.198) TCGA-DU-6392-01 21 42622809 42622809 G A BACE2 Missense_Mutation p.R372H 0.36 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 21 42729091 42729091 G A FAM3B Silent p.Q225Q 0.34 TCGA-DU-6392-01 21 43161219 43161219 C T RIPK4 Missense_Mutation p.A712T 0.34 tolerated(0.64) benign(0.012) TCGA-DU-6392-01 21 43161513 43161513 G A RIPK4 Missense_Mutation p.R614C 0.37 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 21 43161661 43161661 G A RIPK4 Silent p.S564S 0.33 TCGA-DU-6392-01 21 43187180 43187180 G T RIPK4 Missense_Mutation p.P8T 0.29 deleterious(0.01) benign(0.156) TCGA-DU-6392-01 21 43221566 43221566 G T PRDM15 Missense_Mutation p.S1453Y 0.43 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-DU-6392-01 21 43222908 43222908 G A PRDM15 Silent p.G1335G 0.38 TCGA-DU-6392-01 21 43309427 43309427 G A C2CD2 Silent p.L633L 0.37 TCGA-DU-6392-01 21 43338295 43338295 C A C2CD2 Missense_Mutation p.K213N 0.40 deleterious(0.01) benign(0.209) TCGA-DU-6392-01 21 43524044 43524044 G A UMODL1 Missense_Mutation p.V456M 0.33 tolerated(0.25) probably_damaging(0.92) TCGA-DU-6392-01 21 43524161 43524161 G T UMODL1 Missense_Mutation p.V495L 0.11 tolerated(0.07) benign(0.074) TCGA-DU-6392-01 21 43711733 43711733 C T ABCG1 Silent p.G552G 0.33 TCGA-DU-6392-01 21 43732272 43732272 G T TFF3 3'UTR 0.46 TCGA-DU-6392-01 21 43795969 43795969 G A TMPRSS3 Silent p.S401S 0.35 TCGA-DU-6392-01 21 43808547 43808547 G A TMPRSS3 Silent p.Y137Y 0.36 TCGA-DU-6392-01 21 43809106 43809106 C T TMPRSS3 Missense_Mutation p.C85Y 0.27 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 21 43857619 43857619 G T UBASH3A Missense_Mutation p.G472V 0.30 deleterious(0.02) possibly_damaging(0.826) TCGA-DU-6392-01 21 43897497 43897497 C A RSPH1 Missense_Mutation p.A211S 0.33 tolerated(0.06) possibly_damaging(0.856) TCGA-DU-6392-01 21 43913094 43913094 G A RSPH1 Silent p.F50F 0.40 TCGA-DU-6392-01 21 43963669 43963669 C T SLC37A1 Silent p.I229I 0.08 TCGA-DU-6392-01 21 43987140 43987140 T G SLC37A1 Missense_Mutation p.L439R 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 21 44283614 44283614 G A WDR4 Missense_Mutation p.S130L 0.39 deleterious(0) probably_damaging(0.916) TCGA-DU-6392-01 21 44323306 44323306 A G NDUFV3 Missense_Mutation p.K62E 0.12 tolerated(0.17) benign(0.189) TCGA-DU-6392-01 21 44445056 44445056 T G PKNOX1 Missense_Mutation p.W309G 0.43 deleterious(0) benign(0.305) TCGA-DU-6392-01 21 44484021 44484021 G A CBS Missense_Mutation p.P273S 0.58 deleterious(0.02) probably_damaging(0.993) TCGA-DU-6392-01 21 44486415 44486415 G A CBS Missense_Mutation p.A130V 0.27 deleterious(0.02) probably_damaging(0.971) TCGA-DU-6392-01 21 44488723 44488723 G A CBS Missense_Mutation p.A71V 0.30 tolerated(0.33) benign(0) TCGA-DU-6392-01 21 44513269 44513269 G A U2AF1 Silent p.G222G 0.41 TCGA-DU-6392-01 21 44524474 44524474 C T U2AF1 Missense_Mutation p.R28H 0.40 deleterious(0.01) possibly_damaging(0.481) TCGA-DU-6392-01 21 44839825 44839825 G A SIK1 Missense_Mutation p.L345F 0.44 deleterious(0.02) probably_damaging(0.994) TCGA-DU-6392-01 21 45165991 45165991 C T PDXK Silent p.D121D 0.15 TCGA-DU-6392-01 21 45175625 45175625 G T PDXK Missense_Mutation p.R269M 0.43 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 21 45194539 45194539 C A CSTB Missense_Mutation p.K56N 0.46 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 21 45479009 45479009 T C TRAPPC10 Missense_Mutation p.M235T 0.43 deleterious(0) possibly_damaging(0.667) TCGA-DU-6392-01 21 45518355 45518355 G A TRAPPC10 Missense_Mutation p.D1096N 0.38 tolerated(0.07) probably_damaging(0.911) TCGA-DU-6392-01 21 45542167 45542167 G T PWP2 Missense_Mutation p.E582D 0.45 tolerated(0.15) benign(0.012) TCGA-DU-6392-01 21 45544500 45544500 C T PWP2 Silent p.S619S 0.39 TCGA-DU-6392-01 21 45656874 45656874 G A ICOSLG Silent p.G94G 0.25 TCGA-DU-6392-01 21 45713694 45713694 G A AIRE Missense_Mutation p.C434Y 0.32 deleterious(0) probably_damaging(0.927) TCGA-DU-6392-01 21 45745112 45745112 G A PFKL Missense_Mutation p.D652N 0.58 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 21 45876632 45876632 G T LRRC3 Missense_Mutation p.Q35H 0.19 tolerated(0.11) benign(0.008) TCGA-DU-6392-01 21 45941952 45941952 C T TSPEAR Silent p.P460P 0.35 TCGA-DU-6392-01 21 45970949 45970949 A G KRTAP10-2 Silent p.C131C 0.12 TCGA-DU-6392-01 21 45978366 45978366 G A KRTAP10-3 Missense_Mutation p.S78L 0.28 tolerated(0.15) unknown(0) TCGA-DU-6392-01 21 46057875 46057875 G A KRTAP10-10 Missense_Mutation p.A181T 0.35 tolerated(0.75) benign(0.091) TCGA-DU-6392-01 21 46380065 46380065 C T FAM207A Missense_Mutation p.R112C 0.31 deleterious(0) probably_damaging(0.979) TCGA-DU-6392-01 21 46685283 46685283 G T POFUT2 3'UTR 0.33 TCGA-DU-6392-01 21 46875554 46875554 A T COL18A1 Missense_Mutation p.D37V 0.31 unknown(0) TCGA-DU-6392-01 21 46900027 46900027 G T COL18A1 Missense_Mutation p.G632V 0.50 unknown(0) TCGA-DU-6392-01 21 46911189 46911189 C T COL18A1 Silent p.P886P 0.14 TCGA-DU-6392-01 21 46932214 46932214 C T COL18A1 Silent p.L1488L 0.21 TCGA-DU-6392-01 21 46945844 46945844 C A SLC19A1 Nonsense_Mutation p.E394* 0.32 TCGA-DU-6392-01 21 47320530 47320530 G A PCBP3 Missense_Mutation p.R72H 0.31 deleterious(0.02) benign(0.284) TCGA-DU-6392-01 21 47423035 47423035 C T COL6A1 Silent p.D812D 0.27 TCGA-DU-6392-01 21 47424028 47424028 C T COL6A1 3'UTR 0.52 TCGA-DU-6392-01 21 47424042 47424042 T A COL6A1 3'UTR 0.29 TCGA-DU-6392-01 21 47532002 47532002 G A COL6A2 Silent p.P75P 0.20 TCGA-DU-6392-01 21 47549205 47549205 C T COL6A2 Intron 0.07 TCGA-DU-6392-01 21 47549280 47549280 G A COL6A2 Intron 0.38 TCGA-DU-6392-01 21 47570386 47570386 G A FTCD Silent p.N230N 0.48 TCGA-DU-6392-01 21 47610938 47610938 A G LSS 3'UTR 0.24 TCGA-DU-6392-01 21 47626623 47626623 C T LSS Silent p.G509G 0.36 TCGA-DU-6392-01 21 47648609 47648609 C T LSS Intron 0.23 TCGA-DU-6392-01 21 47663565 47663565 G A MCM3AP Missense_Mutation p.P1704S 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 21 47692609 47692609 C A MCM3AP Missense_Mutation p.E777D 0.39 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 21 47819616 47819616 G A PCNT Missense_Mutation p.R1566H 0.41 possibly_damaging(0.84) TCGA-DU-6392-01 21 47836174 47836174 C T PCNT Silent p.S2114S 0.52 TCGA-DU-6392-01 21 47851604 47851604 G A PCNT Silent p.E2742E 0.21 TCGA-DU-6392-01 21 47851752 47851752 C T PCNT Nonsense_Mutation p.Q2792* 0.55 TCGA-DU-6392-01 21 47929264 47929264 G T DIP2A Silent p.V293V 0.24 TCGA-DU-6392-01 21 47969687 47969687 C T DIP2A Silent p.I842I 0.29 TCGA-DU-6392-01 21 48063522 48063522 G A PRMT2 Missense_Mutation p.A39T 0.41 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 21 48068466 48068466 C A PRMT2 Missense_Mutation p.L142M 0.06 tolerated(0.48) probably_damaging(1) TCGA-DU-6392-01 22 16267028 16267028 G A POTEH Missense_Mutation p.A474V 0.09 tolerated(0.17) benign(0.008) TCGA-DU-6392-01 22 16267041 16267041 G T POTEH Missense_Mutation p.L470M 0.06 deleterious(0.04) probably_damaging(0.981) TCGA-DU-6392-01 22 17072024 17072024 C A CCT8L2 Missense_Mutation p.G473C 0.10 deleterious(0.03) benign(0.023) TCGA-DU-6392-01 22 17073055 17073055 C T CCT8L2 Missense_Mutation p.R129H 0.31 tolerated(0.55) benign(0.124) TCGA-DU-6392-01 22 17073125 17073125 C A CCT8L2 Missense_Mutation p.A106S 0.25 tolerated(0.79) benign(0.076) TCGA-DU-6392-01 22 17280789 17280789 C A XKR3 Missense_Mutation p.R154L 0.12 tolerated(0.21) benign(0.017) TCGA-DU-6392-01 22 17308627 17308627 C A HSFY1P1 RNA 0.25 TCGA-DU-6392-01 22 17447227 17447227 C A GAB4 Missense_Mutation p.D351Y 0.27 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 22 17488898 17488898 C A GAB4 Missense_Mutation p.R36I 0.40 tolerated_low_confidence(0.14) benign(0) TCGA-DU-6392-01 22 17589306 17589306 C T IL17RA Silent p.A399A 0.35 TCGA-DU-6392-01 22 17601078 17601078 C T CECR6 Missense_Mutation p.A314T 0.31 tolerated(0.05) unknown(0) TCGA-DU-6392-01 22 17670843 17670843 C A CECR1 Missense_Mutation p.G321W 0.45 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 22 17690298 17690298 C T CECR1 Silent p.K90K 0.43 TCGA-DU-6392-01 22 18028274 18028274 G A CECR2 Silent p.A1078A 0.41 TCGA-DU-6392-01 22 18066240 18066240 G A SLC25A18 Missense_Mutation p.V117I 0.46 tolerated(0.43) possibly_damaging(0.578) TCGA-DU-6392-01 22 18300809 18300809 G A MICAL3 Nonsense_Mutation p.Q1540* 0.36 TCGA-DU-6392-01 22 18324748 18324748 C T MICAL3 Missense_Mutation p.A881T 0.30 probably_damaging(0.998) TCGA-DU-6392-01 22 18347660 18347660 G A MICAL3 Intron 0.29 TCGA-DU-6392-01 22 18368817 18368817 C A MICAL3 Nonsense_Mutation p.E690* 0.09 TCGA-DU-6392-01 22 18385396 18385396 C T MICAL3 Splice_Site p.X197_splice 0.47 TCGA-DU-6392-01 22 18918708 18918708 G A PRODH Silent p.L93L 0.46 TCGA-DU-6392-01 22 19048416 19048416 G A DGCR2 Intron 0.36 TCGA-DU-6392-01 22 19118978 19118978 C A TSSK2 Silent p.S22S 0.40 TCGA-DU-6392-01 22 19119390 19119390 C T TSSK2 Missense_Mutation p.R160C 0.40 tolerated(0.18) benign(0.068) TCGA-DU-6392-01 22 19122584 19122584 C T DGCR14 Silent p.E380E 0.09 TCGA-DU-6392-01 22 19137263 19137263 C A GSC2 Missense_Mutation p.E142D 0.56 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 22 19207451 19207451 C T CLTCL1 Silent p.E954E 0.35 TCGA-DU-6392-01 22 19213861 19213861 G T CLTCL1 Silent p.R610R 0.40 TCGA-DU-6392-01 22 19319035 19319035 G A HIRA Silent p.I994I 0.36 TCGA-DU-6392-01 22 19365463 19365463 G T HIRA Silent p.A514A 0.07 TCGA-DU-6392-01 22 19381928 19381928 G A HIRA Silent p.I253I 0.09 TCGA-DU-6392-01 22 19384429 19384429 C A HIRA Missense_Mutation p.G179W 0.12 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 22 19423208 19423208 C T MRPL40 Missense_Mutation p.A115V 0.09 tolerated(0.19) probably_damaging(0.91) TCGA-DU-6392-01 22 19431881 19431881 G A C22orf39 Silent p.V112V 0.56 TCGA-DU-6392-01 22 19470274 19470274 C A CDC45 Missense_Mutation p.P89H 0.11 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 22 19483525 19483525 C T CDC45 Silent p.Y220Y 0.09 TCGA-DU-6392-01 22 19484966 19484966 C A CDC45 Missense_Mutation p.L249M 0.44 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 22 19496191 19496191 C A CDC45 Silent p.I430I 0.15 TCGA-DU-6392-01 22 19502298 19502298 G A CDC45 Missense_Mutation p.G447D 0.13 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 22 19709443 19709443 G A SEPT5 Missense_Mutation p.E305K 0.37 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 22 19751680 19751680 A G TBX1 Missense_Mutation p.Y172C 0.25 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 22 19752591 19752591 C T TBX1 Silent p.F265F 0.39 TCGA-DU-6392-01 22 19839537 19839537 G T C22orf29 Missense_Mutation p.A83D 0.09 deleterious(0.02) benign(0.42) TCGA-DU-6392-01 22 19882975 19882975 C T TXNRD2 Missense_Mutation p.G302S 0.32 tolerated(0.1) benign(0.144) TCGA-DU-6392-01 22 19960456 19960456 G A ARVCF Missense_Mutation p.R848C 0.13 deleterious(0.02) possibly_damaging(0.677) TCGA-DU-6392-01 22 20073770 20073770 G T DGCR8 Missense_Mutation p.S95I 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.572) TCGA-DU-6392-01 22 20079041 20079041 C T DGCR8 Missense_Mutation p.R464W 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 22 20100486 20100486 G A TRMT2A Missense_Mutation p.R532W 0.41 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 22 20103712 20103712 G A TRMT2A Missense_Mutation p.P150S 0.30 deleterious(0) possibly_damaging(0.688) TCGA-DU-6392-01 22 20109792 20109792 C T RANBP1 Missense_Mutation p.A53V 0.29 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 22 20760798 20760798 G A ZNF74 Missense_Mutation p.R492H 0.40 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 22 20796502 20796502 G A KLHL22 Missense_Mutation p.A588V 0.27 deleterious(0.04) probably_damaging(0.952) TCGA-DU-6392-01 22 20909246 20909246 C A MED15 Missense_Mutation p.L88M 0.08 tolerated(0.08) unknown(0) TCGA-DU-6392-01 22 21062208 21062208 C T PI4KA 3'UTR 0.22 TCGA-DU-6392-01 22 21075617 21075617 A C PI4KA Missense_Mutation p.I1695M 0.38 tolerated(1) benign(0.137) TCGA-DU-6392-01 22 21083711 21083711 G A PI4KA Silent p.S1524S 0.35 TCGA-DU-6392-01 22 21104213 21104213 C T PI4KA Missense_Mutation p.V1075I 0.36 tolerated(0.35) benign(0.018) TCGA-DU-6392-01 22 21107203 21107203 C A PI4KA Missense_Mutation p.G992V 0.37 tolerated(0.08) benign(0.443) TCGA-DU-6392-01 22 21140425 21140425 G A SERPIND1 Missense_Mutation p.A433T 0.31 tolerated(1) benign(0.002) TCGA-DU-6392-01 22 21237800 21237800 G A SNAP29 Missense_Mutation p.A188T 0.34 tolerated(0.39) benign(0.009) TCGA-DU-6392-01 22 21288371 21288371 G A CRKL Missense_Mutation p.A206T 0.43 tolerated(0.38) probably_damaging(0.996) TCGA-DU-6392-01 22 21328398 21328398 C A AIFM3 Nonsense_Mutation p.C134* 0.42 TCGA-DU-6392-01 22 21343119 21343119 G T LZTR1 Missense_Mutation p.S184I 0.28 deleterious(0.01) possibly_damaging(0.516) TCGA-DU-6392-01 22 21384352 21384352 C T SLC7A4 Missense_Mutation p.G424D 0.46 tolerated(0.39) benign(0.02) TCGA-DU-6392-01 22 21385780 21385780 C T SLC7A4 Missense_Mutation p.V108I 0.34 tolerated(0.26) possibly_damaging(0.627) TCGA-DU-6392-01 22 21988347 21988347 C T CCDC116 Missense_Mutation p.R37W 0.33 deleterious(0.01) possibly_damaging(0.599) TCGA-DU-6392-01 22 21988801 21988801 G T CCDC116 Missense_Mutation p.R188M 0.11 deleterious(0) possibly_damaging(0.839) TCGA-DU-6392-01 22 22039067 22039067 G A PPIL2 Silent p.P193P 0.28 TCGA-DU-6392-01 22 22123444 22123444 G A MAPK1 Intron 0.46 TCGA-DU-6392-01 22 22143097 22143097 C T MAPK1 Missense_Mutation p.G204S 0.51 tolerated(0.46) benign(0.209) TCGA-DU-6392-01 22 22453443 22453443 G T IGLV8-61 Missense_Mutation p.Q63H 0.31 deleterious(0.01) probably_damaging(0.98) TCGA-DU-6392-01 22 22453493 22453493 G A IGLV8-61 Missense_Mutation p.R80H 0.42 deleterious(0.04) benign(0.089) TCGA-DU-6392-01 22 22550413 22550413 G A IGLV6-57 Silent p.S30S 0.29 TCGA-DU-6392-01 22 22842384 22842384 T C ZNF280B Missense_Mutation p.Y447C 0.41 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 22 22868777 22868777 G T ZNF280A Missense_Mutation p.P393H 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 22 23040692 23040692 A C IGLV2-23 Missense_Mutation p.D47A 0.34 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-DU-6392-01 22 23077525 23077525 C A IGLV2-18 Missense_Mutation p.A101D 0.32 deleterious_low_confidence(0.01) benign(0.045) TCGA-DU-6392-01 22 23090165 23090165 A G IGLV3-16 Missense_Mutation p.Q35R 0.41 deleterious(0.01) possibly_damaging(0.791) TCGA-DU-6392-01 22 23101539 23101539 C T IGLV2-14 Missense_Mutation p.P65S 0.35 deleterious_low_confidence(0.03) possibly_damaging(0.488) TCGA-DU-6392-01 22 23214094 23214094 G A IGLV4-3 Missense_Mutation p.R84H 0.44 deleterious(0.03) benign(0.022) TCGA-DU-6392-01 22 23465441 23465441 C T GNAZ Silent p.Y297Y 0.33 TCGA-DU-6392-01 22 23487629 23487629 C T RAB36 Missense_Mutation p.T26M 0.34 deleterious_low_confidence(0.03) benign(0.001) TCGA-DU-6392-01 22 23596045 23596045 C T BCR Missense_Mutation p.R447C 0.38 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-DU-6392-01 22 23603637 23603637 C T BCR Silent p.Y554Y 0.45 TCGA-DU-6392-01 22 24122551 24122551 T G MMP11 Missense_Mutation p.L115R 0.09 tolerated(0.39) possibly_damaging(0.823) TCGA-DU-6392-01 22 24129308 24129308 C A SMARCB1 5'UTR 0.23 TCGA-DU-6392-01 22 24135839 24135839 C A SMARCB1 Missense_Mutation p.A109D 0.35 deleterious(0) possibly_damaging(0.835) TCGA-DU-6392-01 22 24210757 24210757 C T AP000350.10 Silent p.I35I 0.43 TCGA-DU-6392-01 22 24220040 24220040 C T SLC2A11 Silent p.T230T 0.20 TCGA-DU-6392-01 22 24376858 24376858 G A GSTT1 Silent p.S164S 0.85 TCGA-DU-6392-01 22 24381723 24381723 G A GSTT1 Silent p.D59D 0.14 TCGA-DU-6392-01 22 24439447 24439447 G A CABIN1 Missense_Mutation p.A143T 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 22 24451535 24451535 G A CABIN1 Missense_Mutation p.A336T 0.34 tolerated(0.46) benign(0.002) TCGA-DU-6392-01 22 24458474 24458474 G A CABIN1 Missense_Mutation p.G561D 0.32 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 22 24515526 24515526 C T CABIN1 Missense_Mutation p.P1498L 0.23 deleterious(0) benign(0.357) TCGA-DU-6392-01 22 24581676 24581676 C T SUSD2 Missense_Mutation p.T373M 0.40 tolerated(0.15) benign(0.21) TCGA-DU-6392-01 22 24582270 24582270 A G SUSD2 Missense_Mutation p.E510G 0.21 tolerated(0.05) probably_damaging(0.951) TCGA-DU-6392-01 22 24583574 24583574 G A SUSD2 Missense_Mutation p.D643N 0.47 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 22 24616068 24616068 A T GGT5 Missense_Mutation p.L545H 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 22 24622178 24622178 G A GGT5 Silent p.I365I 0.38 TCGA-DU-6392-01 22 24658503 24658503 G A POM121L9P RNA 0.50 TCGA-DU-6392-01 22 24659571 24659571 G A POM121L9P RNA 0.25 TCGA-DU-6392-01 22 24964127 24964127 C T SNRPD3 Missense_Mutation p.A101V 0.13 tolerated(0.22) benign(0.391) TCGA-DU-6392-01 22 25024747 25024747 G A GGT1 Missense_Mutation p.A551T 0.29 tolerated(0.56) benign(0.008) TCGA-DU-6392-01 22 25115768 25115768 C A PIWIL3 Missense_Mutation p.D827Y 0.35 deleterious(0) benign(0.186) TCGA-DU-6392-01 22 25147375 25147375 G T PIWIL3 Silent p.T356T 0.06 TCGA-DU-6392-01 22 25750681 25750681 G A LRP5L Silent p.T179T 0.10 TCGA-DU-6392-01 22 26063737 26063737 G A ADRBK2 Missense_Mutation p.R158Q 0.10 deleterious(0.04) benign(0.041) TCGA-DU-6392-01 22 26114289 26114289 C T ADRBK2 Missense_Mutation p.R578C 0.44 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 22 26165202 26165202 G A MYO18B Missense_Mutation p.S440N 0.44 tolerated_low_confidence(0.13) benign(0.012) TCGA-DU-6392-01 22 26168350 26168350 G T MYO18B Missense_Mutation p.S581I 0.42 tolerated(0.1) probably_damaging(0.927) TCGA-DU-6392-01 22 26272207 26272207 G A MYO18B Missense_Mutation p.A1378T 0.42 tolerated(0.05) benign(0.049) TCGA-DU-6392-01 22 26272246 26272246 C A MYO18B Missense_Mutation p.L1391I 0.41 tolerated(0.05) benign(0.262) TCGA-DU-6392-01 22 26422936 26422936 C T MYO18B Silent p.D2332D 0.30 TCGA-DU-6392-01 22 26706775 26706775 G A SEZ6L Missense_Mutation p.A552T 0.34 tolerated(0.14) benign(0.035) TCGA-DU-6392-01 22 26868841 26868841 C A HPS4 Missense_Mutation p.G114V 0.34 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 22 26884027 26884027 G A SRRD Missense_Mutation p.E95K 0.57 tolerated(0.07) benign(0.231) TCGA-DU-6392-01 22 26890245 26890245 C T TFIP11 Missense_Mutation p.S673N 0.45 tolerated(0.36) benign(0.001) TCGA-DU-6392-01 22 26890312 26890312 A C SRRD 3'UTR 0.56 TCGA-DU-6392-01 22 26892165 26892165 A G TFIP11 Missense_Mutation p.S575P 0.36 tolerated(0.09) possibly_damaging(0.46) TCGA-DU-6392-01 22 26895172 26895172 G A TFIP11 Silent p.D409D 0.13 TCGA-DU-6392-01 22 27021500 27021500 G T CRYBA4 Missense_Mutation p.G72C 0.06 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 22 28192905 28192905 G A MN1 Silent p.S1209S 0.42 TCGA-DU-6392-01 22 28193520 28193520 C T MN1 Silent p.A1004A 0.38 TCGA-DU-6392-01 22 28193974 28193974 G A MN1 Missense_Mutation p.P853L 0.38 benign(0.305) TCGA-DU-6392-01 22 28306976 28306976 G A PITPNB Missense_Mutation p.T58M 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 22 29121015 29121015 C T CHEK2 Missense_Mutation p.R224H 0.26 tolerated(0.51) benign(0.016) TCGA-DU-6392-01 22 29121084 29121084 G A CHEK2 Missense_Mutation p.A201V 0.21 tolerated(1) benign(0.008) TCGA-DU-6392-01 22 29446342 29446342 G A ZNRF3 Missense_Mutation p.A725T 0.21 tolerated_low_confidence(0.26) benign(0.006) TCGA-DU-6392-01 22 29446491 29446491 C T ZNRF3 Silent p.Y774Y 0.41 TCGA-DU-6392-01 22 29533483 29533483 A G KREMEN1 Missense_Mutation p.D262G 0.09 deleterious(0) possibly_damaging(0.64) TCGA-DU-6392-01 22 29664253 29664253 C A EWSR1 5'Flank 0.44 TCGA-DU-6392-01 22 29704282 29704282 T C GAS2L1 Missense_Mutation p.C63R 0.40 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 22 29724848 29724848 G A AP1B1 Missense_Mutation p.H938Y 0.38 tolerated(1) benign(0.001) TCGA-DU-6392-01 22 29755866 29755866 A G AP1B1 Missense_Mutation p.Y76H 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 22 29904471 29904471 G A THOC5 Missense_Mutation p.P676L 0.34 tolerated(0.17) possibly_damaging(0.713) TCGA-DU-6392-01 22 30416049 30416049 A C MTMR3 Missense_Mutation p.I801L 0.12 tolerated_low_confidence(0.61) benign(0.004) TCGA-DU-6392-01 22 30416681 30416681 C T MTMR3 Silent p.S1011S 0.41 TCGA-DU-6392-01 22 30416742 30416742 C T MTMR3 Missense_Mutation p.R1032C 0.39 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 22 30688802 30688802 G A TBC1D10A Silent p.R370R 0.45 TCGA-DU-6392-01 22 30766567 30766567 G A CCDC157 Missense_Mutation p.A225T 0.21 tolerated(0.74) benign(0.008) TCGA-DU-6392-01 22 30855986 30855986 C A SEC14L3 3'UTR 0.28 TCGA-DU-6392-01 22 30951066 30951066 G A GAL3ST1 Silent p.I382I 0.44 TCGA-DU-6392-01 22 31286930 31286930 C T OSBP2 Silent p.D613D 0.08 TCGA-DU-6392-01 22 31289153 31289153 G A OSBP2 Silent p.K638K 0.26 TCGA-DU-6392-01 22 31324094 31324094 C T MORC2 Missense_Mutation p.R919H 0.43 tolerated(0.17) benign(0.005) TCGA-DU-6392-01 22 31338136 31338136 T G MORC2 Missense_Mutation p.E121D 0.34 tolerated(0.2) benign(0.008) TCGA-DU-6392-01 22 31485987 31485987 G T SMTN Missense_Mutation p.E258D 0.20 tolerated(0.1) benign(0.005) TCGA-DU-6392-01 22 31531876 31531876 G A PLA2G3 Missense_Mutation p.R455W 0.31 tolerated(0.07) benign(0.01) TCGA-DU-6392-01 22 31533810 31533810 A T PLA2G3 Missense_Mutation p.S318T 0.36 tolerated(0.17) benign(0.37) TCGA-DU-6392-01 22 31583084 31583084 G A RNF185 Missense_Mutation p.A2T 0.35 deleterious(0.01) unknown(0) TCGA-DU-6392-01 22 31654373 31654373 C T LIMK2 Silent p.F50F 0.45 TCGA-DU-6392-01 22 31829985 31829985 C T DRG1 3'UTR 0.24 TCGA-DU-6392-01 22 31976257 31976257 G A SFI1 Splice_Site p.X386_splice 0.46 TCGA-DU-6392-01 22 32242867 32242867 G A DEPDC5 Silent p.T1014T 0.10 TCGA-DU-6392-01 22 32482206 32482207 - A SLC5A1 Frame_Shift_Ins p.I343Nfs*10 0.31 TCGA-DU-6392-01 22 32754246 32754246 G A RFPL3 Missense_Mutation p.C63Y 0.35 deleterious(0.02) probably_damaging(0.989) TCGA-DU-6392-01 22 32875191 32875191 C T FBXO7 Nonsense_Mutation p.Q116* 0.16 TCGA-DU-6392-01 22 32909590 32909590 T G SYN3 3'UTR 0.45 TCGA-DU-6392-01 22 33255339 33255339 G A TIMP3 Missense_Mutation p.S204N 0.41 tolerated(0.18) benign(0.006) TCGA-DU-6392-01 22 33402448 33402448 A G SYN3 Missense_Mutation p.M67T 0.12 tolerated(0.18) unknown(0) TCGA-DU-6392-01 22 33402659 33402659 G A SYN3 5'UTR 0.33 TCGA-DU-6392-01 22 35819225 35819225 G A MCM5 Missense_Mutation p.S665N 0.12 tolerated(0.16) benign(0.119) TCGA-DU-6392-01 22 35947819 35947819 G A RASD2 Missense_Mutation p.E181K 0.50 tolerated(0.35) benign(0.009) TCGA-DU-6392-01 22 35948047 35948047 G A RASD2 Missense_Mutation p.A257T 0.32 tolerated(0.49) benign(0.003) TCGA-DU-6392-01 22 35948189 35948189 C A RASD2 3'UTR 0.78 TCGA-DU-6392-01 22 36122598 36122598 G A APOL5 Silent p.V161V 0.34 TCGA-DU-6392-01 22 36122838 36122838 G T APOL5 Missense_Mutation p.K241N 0.10 deleterious(0.01) benign(0.247) TCGA-DU-6392-01 22 36661287 36661287 G A APOL1 Silent p.Q151Q 0.38 TCGA-DU-6392-01 22 36684352 36684352 G A MYH9 Silent p.I1626I 0.42 TCGA-DU-6392-01 22 36697595 36697595 C T MYH9 Silent p.E872E 0.38 TCGA-DU-6392-01 22 36983581 36983581 G T CACNG2 Missense_Mutation p.L76M 0.34 tolerated(0.24) benign(0.004) TCGA-DU-6392-01 22 37387530 37387530 T C TEX33 Missense_Mutation p.D246G 0.10 deleterious(0) possibly_damaging(0.728) TCGA-DU-6392-01 22 37398094 37398094 C T TEX33 Silent p.R91R 0.47 TCGA-DU-6392-01 22 37425477 37425477 C T MPST Silent p.Y292Y 0.42 TCGA-DU-6392-01 22 37462235 37462235 C T TMPRSS6 Missense_Mutation p.R774H 0.28 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 22 37499319 37499319 G A TMPRSS6 Silent p.L56L 0.34 TCGA-DU-6392-01 22 37578569 37578569 C T C1QTNF6 Missense_Mutation p.E166K 0.36 deleterious(0) benign(0.405) TCGA-DU-6392-01 22 37770817 37770817 C T ELFN2 Missense_Mutation p.R253Q 0.39 tolerated(0.56) benign(0.119) TCGA-DU-6392-01 22 37770993 37770993 G A ELFN2 Silent p.F194F 0.41 TCGA-DU-6392-01 22 37771272 37771272 G A ELFN2 Silent p.G101G 0.14 TCGA-DU-6392-01 22 38046487 38046487 G A SH3BP1 Intron 0.40 TCGA-DU-6392-01 22 38046569 38046569 G T SH3BP1 Missense_Mutation p.G479C 0.41 deleterious(0) possibly_damaging(0.88) TCGA-DU-6392-01 22 38120281 38120281 A G TRIOBP Missense_Mutation p.D573G 0.12 tolerated_low_confidence(0.06) possibly_damaging(0.601) TCGA-DU-6392-01 22 38211691 38211691 G A GCAT Missense_Mutation p.G305E 0.31 tolerated(0.08) benign(0.003) TCGA-DU-6392-01 22 38212782 38212782 G T GCAT Intron 0.18 TCGA-DU-6392-01 22 38228688 38228688 C T ANKRD54 Missense_Mutation p.D262N 0.19 tolerated(0.16) benign(0.045) TCGA-DU-6392-01 22 38333770 38333770 A C MICALL1 Missense_Mutation p.K814T 0.32 deleterious(0) possibly_damaging(0.861) TCGA-DU-6392-01 22 38493048 38493048 G T BAIAP2L2 Missense_Mutation p.F201L 0.29 tolerated(0.12) possibly_damaging(0.598) TCGA-DU-6392-01 22 38516781 38516781 T C PLA2G6 Missense_Mutation p.D576G 0.36 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 22 38539144 38539144 C T PLA2G6 Missense_Mutation p.A193T 0.37 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 22 38617432 38617432 G A TMEM184B 3'UTR 0.32 TCGA-DU-6392-01 22 38617459 38617459 G A TMEM184B 3'UTR 0.30 TCGA-DU-6392-01 22 38617604 38617604 G A TMEM184B Nonsense_Mutation p.Q366* 0.48 TCGA-DU-6392-01 22 38690147 38690147 G A CSNK1E Missense_Mutation p.R396W 0.38 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-DU-6392-01 22 38823262 38823262 G A KCNJ4 Silent p.G292G 0.21 TCGA-DU-6392-01 22 38963608 38963608 G T DMC1 Missense_Mutation p.L26M 0.39 tolerated(0.12) benign(0.002) TCGA-DU-6392-01 22 39066886 39066886 C T CBY1 Intron 0.09 TCGA-DU-6392-01 22 39147023 39147023 G A SUN2 Missense_Mutation p.R102W 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 22 39262791 39262791 C T CBX6 Missense_Mutation p.R221H 0.32 deleterious(0) possibly_damaging(0.907) TCGA-DU-6392-01 22 39262866 39262866 G T CBX6 Missense_Mutation p.A196E 0.32 tolerated(0.15) benign(0.031) TCGA-DU-6392-01 22 39262895 39262895 G A CBX6 Silent p.G186G 0.33 TCGA-DU-6392-01 22 39421198 39421198 T C APOBEC3D Missense_Mutation p.C112R 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 22 39421574 39421574 G A APOBEC3D Missense_Mutation p.C168Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 22 39425374 39425374 G A APOBEC3D Silent p.P204P 0.24 TCGA-DU-6392-01 22 39483117 39483117 C T APOBEC3G Missense_Mutation p.R376W 0.21 tolerated(0.11) benign(0.035) TCGA-DU-6392-01 22 39497438 39497438 G A APOBEC3H Missense_Mutation p.C116Y 0.16 tolerated(1) benign(0.043) TCGA-DU-6392-01 22 39883969 39883969 G A MGAT3 Missense_Mutation p.R206H 0.50 deleterious(0.02) possibly_damaging(0.828) TCGA-DU-6392-01 22 39884759 39884759 G A MGAT3 Silent p.Q469Q 0.44 TCGA-DU-6392-01 22 40054159 40054159 G A CACNA1I Silent p.P665P 0.29 TCGA-DU-6392-01 22 40057154 40057154 C A CACNA1I Missense_Mutation p.L914M 0.31 deleterious(0.01) benign(0.438) TCGA-DU-6392-01 22 40161424 40161424 C A ENTHD1 Missense_Mutation p.E341D 0.08 deleterious(0.02) benign(0.085) TCGA-DU-6392-01 22 40417586 40417586 C T FAM83F Nonsense_Mutation p.Q358* 0.20 TCGA-DU-6392-01 22 40661037 40661037 T C TNRC6B Missense_Mutation p.V268A 0.12 tolerated(0.48) benign(0.007) TCGA-DU-6392-01 22 40745930 40745930 G A ADSL Missense_Mutation p.R83H 0.44 deleterious(0.03) benign(0.003) TCGA-DU-6392-01 22 40745935 40745935 C T ADSL Nonsense_Mutation p.R85* 0.43 TCGA-DU-6392-01 22 40800570 40800570 C T SGSM3 Missense_Mutation p.R126W 0.46 deleterious(0.02) possibly_damaging(0.757) TCGA-DU-6392-01 22 40802149 40802149 C A SGSM3 Silent p.L294L 0.09 TCGA-DU-6392-01 22 40805486 40805486 C T SGSM3 Missense_Mutation p.A710V 0.38 deleterious(0.01) possibly_damaging(0.672) TCGA-DU-6392-01 22 40825629 40825629 G A MKL1 Silent p.S94S 0.47 TCGA-DU-6392-01 22 40827453 40827453 G T MKL1 Missense_Mutation p.S32Y 0.07 deleterious(0) possibly_damaging(0.883) TCGA-DU-6392-01 22 41077577 41077577 C T MCHR1 Missense_Mutation p.T305M 0.37 tolerated(0.06) benign(0.011) TCGA-DU-6392-01 22 41077581 41077581 C A MCHR1 Silent p.S306S 0.38 TCGA-DU-6392-01 22 41175130 41175130 C T SLC25A17 Splice_Site p.X112_splice 0.11 TCGA-DU-6392-01 22 41223100 41223100 C A ST13 Missense_Mutation p.Q327H 0.12 deleterious(0.01) benign(0.014) TCGA-DU-6392-01 22 41231579 41231579 C T ST13 Missense_Mutation p.R188Q 0.10 tolerated(0.05) possibly_damaging(0.643) TCGA-DU-6392-01 22 41257829 41257829 G T DNAJB7 Nonsense_Mutation p.S57* 0.37 TCGA-DU-6392-01 22 41574489 41574489 G T EP300 Missense_Mutation p.Q2258H 0.42 probably_damaging(0.948) TCGA-DU-6392-01 22 41574637 41574637 C T EP300 Missense_Mutation p.R2308C 0.45 probably_damaging(0.973) TCGA-DU-6392-01 22 41574836 41574836 C A EP300 Missense_Mutation p.S2374Y 0.50 possibly_damaging(0.737) TCGA-DU-6392-01 22 41620097 41620097 G A L3MBTL2 Missense_Mutation p.R339H 0.10 deleterious(0) benign(0.298) TCGA-DU-6392-01 22 41620783 41620783 C T L3MBTL2 Missense_Mutation p.A410V 0.21 deleterious(0.04) benign(0.053) TCGA-DU-6392-01 22 41745272 41745272 G A ZC3H7B Missense_Mutation p.E639K 0.38 deleterious(0) probably_damaging(0.937) TCGA-DU-6392-01 22 41783660 41783660 G A TEF Missense_Mutation p.V155M 0.59 tolerated(0.15) benign(0.321) TCGA-DU-6392-01 22 41833168 41833168 C A TOB2 Missense_Mutation p.G61V 0.11 deleterious(0) probably_damaging(0.971) TCGA-DU-6392-01 22 41903923 41903923 C T ACO2 Missense_Mutation p.A101V 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 22 41923878 41923878 G A POLR3H 3'UTR 0.30 TCGA-DU-6392-01 22 41924049 41924049 A G POLR3H 3'UTR 0.15 TCGA-DU-6392-01 22 42070874 42070874 G A NHP2L1 3'UTR 0.50 TCGA-DU-6392-01 22 42071031 42071031 G T NHP2L1 Missense_Mutation p.P98H 0.10 deleterious(0) probably_damaging(0.965) TCGA-DU-6392-01 22 42206291 42206291 G T CCDC134 Missense_Mutation p.K102N 0.26 deleterious(0) probably_damaging(0.91) TCGA-DU-6392-01 22 42273399 42273399 G A SREBF2 Missense_Mutation p.G518D 0.51 deleterious(0.01) benign(0.394) TCGA-DU-6392-01 22 42341982 42341982 G T CENPM Silent p.P55P 0.12 TCGA-DU-6392-01 22 42473371 42473371 G A FAM109B Missense_Mutation p.R25H 0.38 tolerated(0.53) probably_damaging(1) TCGA-DU-6392-01 22 42564699 42564699 G A TCF20 Missense_Mutation p.A1948V 0.54 benign(0) TCGA-DU-6392-01 22 42608017 42608017 C A TCF20 Missense_Mutation p.D1099Y 0.16 probably_damaging(0.928) TCGA-DU-6392-01 22 42609038 42609038 C A TCF20 Missense_Mutation p.Q758H 0.40 probably_damaging(0.998) TCGA-DU-6392-01 22 42610042 42610042 T G TCF20 Missense_Mutation p.M424L 0.11 benign(0.001) TCGA-DU-6392-01 22 42610433 42610433 C T TCF20 Silent p.Q293Q 0.31 TCGA-DU-6392-01 22 42910712 42910712 C T RRP7A Silent p.E178E 0.24 TCGA-DU-6392-01 22 42976349 42976349 G T POLDIP3 3'Flank 0.15 TCGA-DU-6392-01 22 43036038 43036038 A G ATP5L2 Silent p.T81T 0.14 TCGA-DU-6392-01 22 43465639 43465639 A T TTLL1 Intron 0.12 TCGA-DU-6392-01 22 43471560 43471560 G A TTLL1 Silent p.I11I 0.38 TCGA-DU-6392-01 22 43529484 43529484 C T MCAT Silent p.R246R 0.31 TCGA-DU-6392-01 22 43568470 43568470 G A TTLL12 Missense_Mutation p.R478W 0.11 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 22 43576899 43576899 C T TTLL12 Missense_Mutation p.R132H 0.42 deleterious(0.05) benign(0.117) TCGA-DU-6392-01 22 43606935 43606935 G A SCUBE1 Silent p.H792H 0.32 TCGA-DU-6392-01 22 43654256 43654256 G A SCUBE1 Silent p.Y232Y 0.48 TCGA-DU-6392-01 22 43821091 43821091 G A MPPED1 Missense_Mutation p.A34T 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.579) TCGA-DU-6392-01 22 43924662 43924662 A C EFCAB6 3'UTR 0.34 TCGA-DU-6392-01 22 43926799 43926799 G A EFCAB6 Missense_Mutation p.R1427C 0.43 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 22 44022455 44022455 G A EFCAB6 Silent p.D779D 0.46 TCGA-DU-6392-01 22 44079661 44079661 G A EFCAB6 Missense_Mutation p.A406V 0.34 tolerated(0.42) benign(0.001) TCGA-DU-6392-01 22 44083420 44083420 A G EFCAB6 Missense_Mutation p.F358S 0.35 deleterious(0) probably_damaging(0.92) TCGA-DU-6392-01 22 44328962 44328962 C A PNPLA3 Missense_Mutation p.L231I 0.35 tolerated(0.4) benign(0.045) TCGA-DU-6392-01 22 44360381 44360381 A G SAMM50 Missense_Mutation p.D61G 0.22 deleterious(0.01) possibly_damaging(0.611) TCGA-DU-6392-01 22 44892750 44892750 C T LDOC1L Silent p.A229A 0.36 TCGA-DU-6392-01 22 44892773 44892773 C T LDOC1L Missense_Mutation p.A222T 0.36 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-DU-6392-01 22 45110540 45110540 C T PRR5 Silent p.N91N 0.34 TCGA-DU-6392-01 22 45309846 45309846 G A PHF21B Silent p.F229F 0.45 TCGA-DU-6392-01 22 45598963 45598963 C T KIAA0930 Missense_Mutation p.A259T 0.37 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 22 45681909 45681909 G A UPK3A Missense_Mutation p.C47Y 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 22 45689190 45689190 C A UPK3A Missense_Mutation p.L234I 0.08 tolerated(0.46) benign(0.075) TCGA-DU-6392-01 22 45728465 45728465 T C FAM118A Missense_Mutation p.F271L 0.40 tolerated(0.1) probably_damaging(0.997) TCGA-DU-6392-01 22 45736290 45736290 C A FAM118A 3'UTR 0.35 TCGA-DU-6392-01 22 45768173 45768173 C A SMC1B Splice_Site p.X687_splice 0.53 TCGA-DU-6392-01 22 45785689 45785689 A G SMC1B Missense_Mutation p.I545T 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 22 45802461 45802461 T C SMC1B Missense_Mutation p.I165M 0.34 tolerated(0.08) benign(0.016) TCGA-DU-6392-01 22 45826798 45826798 C T RIBC2 Missense_Mutation p.R303C 0.55 tolerated(0.09) benign(0.031) TCGA-DU-6392-01 22 46125390 46125390 G A ATXN10 Missense_Mutation p.A272T 0.29 deleterious(0.03) possibly_damaging(0.607) TCGA-DU-6392-01 22 46594465 46594465 G A PPARA Missense_Mutation p.G62D 0.08 tolerated_low_confidence(0.11) possibly_damaging(0.616) TCGA-DU-6392-01 22 46614215 46614215 G T PPARA Missense_Mutation p.S142I 0.13 tolerated(0.05) benign(0.094) TCGA-DU-6392-01 22 46652821 46652821 G T PKDREJ Silent p.V2133V 0.35 TCGA-DU-6392-01 22 46654856 46654856 G A PKDREJ Missense_Mutation p.P1455L 0.06 deleterious(0.02) benign(0.26) TCGA-DU-6392-01 22 46655314 46655314 G A PKDREJ Silent p.N1302N 0.43 TCGA-DU-6392-01 22 46656278 46656278 G A PKDREJ Missense_Mutation p.T981M 0.37 deleterious(0.02) possibly_damaging(0.882) TCGA-DU-6392-01 22 46677495 46677495 G T TTC38 Splice_Site p.X206_splice 0.24 TCGA-DU-6392-01 22 46684453 46684453 G A TTC38 Silent p.Q350Q 0.36 TCGA-DU-6392-01 22 46704226 46704226 G T GTSE1 Missense_Mutation p.D50Y 0.08 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 22 46704517 46704517 C A GTSE1 Missense_Mutation p.L147I 0.13 tolerated(0.14) benign(0.419) TCGA-DU-6392-01 22 46712304 46712304 C A GTSE1 Missense_Mutation p.S476Y 0.41 deleterious(0) possibly_damaging(0.837) TCGA-DU-6392-01 22 46733779 46733779 G T TRMU Missense_Mutation p.Q62H 0.08 deleterious(0.03) benign(0.03) TCGA-DU-6392-01 22 46765670 46765670 G A CELSR1 Silent p.Y2597Y 0.22 TCGA-DU-6392-01 22 46930126 46930126 G A CELSR1 Missense_Mutation p.A981V 0.41 tolerated(0.05) benign(0.232) TCGA-DU-6392-01 22 46930540 46930540 G A CELSR1 Missense_Mutation p.T843I 0.32 deleterious(0) possibly_damaging(0.869) TCGA-DU-6392-01 22 46931795 46931795 G A CELSR1 Missense_Mutation p.L425F 0.29 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 22 47290699 47290699 G A TBC1D22A Missense_Mutation p.R286H 0.38 deleterious(0) probably_damaging(0.92) TCGA-DU-6392-01 22 47290733 47290733 G T TBC1D22A Missense_Mutation p.K297N 0.34 tolerated(0.13) benign(0.253) TCGA-DU-6392-01 22 50192750 50192750 C A BRD1 Missense_Mutation p.E514D 0.09 tolerated(0.12) benign(0.023) TCGA-DU-6392-01 22 50277948 50277948 C T ZBED4 Missense_Mutation p.A213V 0.45 tolerated_low_confidence(0.06) benign(0.147) TCGA-DU-6392-01 22 50278317 50278317 G A ZBED4 Missense_Mutation p.R336H 0.34 tolerated(0.09) probably_damaging(0.996) TCGA-DU-6392-01 22 50278552 50278552 C A ZBED4 Missense_Mutation p.F414L 0.07 tolerated(1) benign(0) TCGA-DU-6392-01 22 50279298 50279298 C G ZBED4 Missense_Mutation p.A663G 0.10 deleterious(0.01) possibly_damaging(0.865) TCGA-DU-6392-01 22 50304164 50304164 C T ALG12 Missense_Mutation p.M129I 0.28 benign(0.006) TCGA-DU-6392-01 22 50502619 50502619 G A MLC1 Silent p.Y301Y 0.42 TCGA-DU-6392-01 22 50552133 50552133 A G MOV10L1 Missense_Mutation p.N267S 0.12 deleterious(0.04) benign(0.128) TCGA-DU-6392-01 22 50558970 50558970 T C MOV10L1 Silent p.Y498Y 0.06 TCGA-DU-6392-01 22 50617667 50617667 C T PANX2 Silent p.F665F 0.12 TCGA-DU-6392-01 22 50649116 50649116 G T SELO Missense_Mutation p.S376I 0.07 tolerated(0.26) benign(0.038) TCGA-DU-6392-01 22 50656511 50656511 T G TUBGCP6 Missense_Mutation p.N1735T 0.32 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 22 50688893 50688893 G A HDAC10 Missense_Mutation p.A85V 0.35 tolerated(0.18) benign(0.021) TCGA-DU-6392-01 22 50718975 50718975 A T PLXNB2 Missense_Mutation p.F1373Y 0.14 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 22 50719202 50719202 G T PLXNB2 Missense_Mutation p.L1322M 0.26 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 22 50722625 50722625 G A PLXNB2 Silent p.N733N 0.10 TCGA-DU-6392-01 22 50727510 50727510 T A PLXNB2 Missense_Mutation p.D377V 0.23 tolerated(0.48) benign(0.291) TCGA-DU-6392-01 22 50853068 50853068 C T PPP6R2 Missense_Mutation p.R168C 0.36 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 22 50857842 50857842 G A PPP6R2 Missense_Mutation p.V267I 0.41 deleterious(0.04) possibly_damaging(0.602) TCGA-DU-6392-01 22 50860689 50860689 G T PPP6R2 Missense_Mutation p.E285D 0.09 tolerated(0.19) benign(0.007) TCGA-DU-6392-01 22 50862008 50862008 G A PPP6R2 Missense_Mutation p.E365K 0.35 deleterious(0.01) probably_damaging(0.966) TCGA-DU-6392-01 22 50898014 50898014 G A SBF1 Silent p.R1191R 0.33 TCGA-DU-6392-01 22 50898420 50898420 C T SBF1 Missense_Mutation p.R1151H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 22 50900823 50900823 G A SBF1 Missense_Mutation p.T736I 0.15 deleterious(0.03) benign(0.144) TCGA-DU-6392-01 22 50905974 50905974 G A SBF1 Missense_Mutation p.T142M 0.58 tolerated(0.22) benign(0.441) TCGA-DU-6392-01 22 50906115 50906115 G A SBF1 Missense_Mutation p.T95M 0.48 tolerated(0.1) benign(0.091) TCGA-DU-6392-01 22 50943312 50943312 G A LMF2 Silent p.Y452Y 0.50 TCGA-DU-6392-01 22 50956563 50956563 C T NCAPH2 Missense_Mutation p.R168C 0.31 tolerated(0.08) benign(0.013) TCGA-DU-6392-01 22 50987806 50987806 A G KLHDC7B Missense_Mutation p.D404G 0.12 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 22 51009825 51009825 C T CPT1B Silent p.A573A 0.46 TCGA-DU-6392-01 22 51019850 51019850 G A CHKB Missense_Mutation p.R194W 0.57 deleterious(0.03) benign(0.242) TCGA-DU-6392-01 22 51065374 51065374 G A ARSA Missense_Mutation p.A191V 0.43 tolerated(0.09) benign(0.003) TCGA-DU-6392-01 22 51117811 51117811 C T SHANK3 Silent p.N280N 0.42 TCGA-DU-6392-01 22 51159495 51159495 G T SHANK3 Missense_Mutation p.K1094N 0.44 benign(0.221) TCGA-DU-6392-01 22 51160488 51160488 G T SHANK3 Missense_Mutation p.K1425N 0.27 probably_damaging(0.995) TCGA-DU-6392-01 22 51160848 51160848 G A SHANK3 Silent p.S1545S 0.45 TCGA-DU-6392-01 2 100210453 100210453 G A AFF3 Missense_Mutation p.A582V 0.37 tolerated_low_confidence(0.08) benign(0.395) TCGA-DU-6392-01 2 10045094 10045094 A G TAF1B Missense_Mutation p.N305S 0.39 tolerated(0.23) benign(0.077) TCGA-DU-6392-01 2 101010027 101010027 A G CHST10 Missense_Mutation p.W251R 0.08 tolerated(0.43) benign(0.002) TCGA-DU-6392-01 2 101183071 101183071 G A PDCL3 Missense_Mutation p.R38H 0.41 tolerated(0.3) benign(0.003) TCGA-DU-6392-01 2 101185443 101185443 G A PDCL3 Missense_Mutation p.E62K 0.37 tolerated(0.17) benign(0.365) TCGA-DU-6392-01 2 101587504 101587504 C T NPAS2 Missense_Mutation p.P370S 0.28 tolerated(0.93) benign(0.01) TCGA-DU-6392-01 2 101591354 101591354 G A NPAS2 Silent p.A410A 0.33 TCGA-DU-6392-01 2 101648805 101648805 C A TBC1D8 Nonsense_Mutation p.E606* 0.34 TCGA-DU-6392-01 2 101654024 101654024 C T TBC1D8 Silent p.Q459Q 0.32 TCGA-DU-6392-01 2 101881457 101881457 G A CNOT11 Missense_Mutation p.R328Q 0.47 tolerated(0.2) probably_damaging(0.953) TCGA-DU-6392-01 2 101885772 101885772 T C CNOT11 Missense_Mutation p.F477S 0.13 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 2 101898453 101898453 T C RNF149 Missense_Mutation p.N343D 0.38 tolerated(0.2) benign(0.004) TCGA-DU-6392-01 2 102456416 102456416 G T MAP4K4 Missense_Mutation p.K303N 0.35 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 2 102626164 102626164 C T IL1R2 Missense_Mutation p.H70Y 0.40 tolerated(0.34) benign(0.033) TCGA-DU-6392-01 2 102842450 102842450 G A IL1RL2 Missense_Mutation p.D362N 0.33 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 2 102958729 102958729 A G IL1RL1 Silent p.Q219Q 0.31 TCGA-DU-6392-01 2 102968195 102968195 G A IL1RL1 Silent p.A495A 0.35 TCGA-DU-6392-01 2 103068357 103068357 A G IL18RAP Missense_Mutation p.T506A 0.44 tolerated(0.08) benign(0.219) TCGA-DU-6392-01 2 103068626 103068626 G A IL18RAP Silent p.Q595Q 0.30 TCGA-DU-6392-01 2 103095459 103095459 C A SLC9A4 Missense_Mutation p.L140M 0.16 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 2 103119909 103119909 C T SLC9A4 Silent p.V241V 0.50 TCGA-DU-6392-01 2 103274445 103274445 C A SLC9A2 Missense_Mutation p.L238M 0.08 tolerated(0.33) probably_damaging(0.995) TCGA-DU-6392-01 2 103300674 103300674 G A SLC9A2 Missense_Mutation p.G435E 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 103317600 103317600 T C SLC9A2 Missense_Mutation p.V553A 0.47 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 2 103335385 103335385 C T MFSD9 Missense_Mutation p.V307I 0.12 tolerated(0.34) benign(0.05) TCGA-DU-6392-01 2 103378809 103378809 G A TMEM182 Splice_Site p.X44_splice 0.09 TCGA-DU-6392-01 2 10566879 10566879 G T HPCAL1 Missense_Mutation p.G172C 0.41 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 2 105713700 105713700 G A MRPS9 Silent p.A339A 0.40 TCGA-DU-6392-01 2 10580867 10580867 C T ODC1 Missense_Mutation p.A457T 0.29 tolerated_low_confidence(0.23) benign(0.007) TCGA-DU-6392-01 2 10582301 10582301 C A ODC1 Splice_Site p.X251_splice 0.16 TCGA-DU-6392-01 2 105858813 105858813 G A GPR45 Silent p.S166S 0.39 TCGA-DU-6392-01 2 105885808 105885808 T C TGFBRAP1 Missense_Mutation p.D776G 0.34 tolerated(0.16) benign(0.001) TCGA-DU-6392-01 2 105889457 105889457 G A TGFBRAP1 Silent p.H609H 0.11 TCGA-DU-6392-01 2 105896980 105896980 G A TGFBRAP1 Missense_Mutation p.A441V 0.39 tolerated(0.24) benign(0.008) TCGA-DU-6392-01 2 105924279 105924279 G A TGFBRAP1 Silent p.I160I 0.42 TCGA-DU-6392-01 2 106690484 106690484 G A C2orf40 Missense_Mutation p.M90I 0.23 deleterious(0.01) benign(0.052) TCGA-DU-6392-01 2 107021637 107021637 C T RGPD3 3'UTR 0.43 TCGA-DU-6392-01 2 107073497 107073497 C T RGPD3 Missense_Mutation p.G112E 0.32 tolerated(0.13) benign(0.116) TCGA-DU-6392-01 2 10712240 10712240 C A NOL10 Missense_Mutation p.G675V 0.41 deleterious(0.04) benign(0.236) TCGA-DU-6392-01 2 107450509 107450509 G A ST6GAL2 Missense_Mutation p.S346L 0.29 probably_damaging(1) TCGA-DU-6392-01 2 108863776 108863776 C A SULT1C3 Missense_Mutation p.F42L 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 2 108921631 108921631 T G SULT1C2 Missense_Mutation p.V180G 0.08 tolerated(0.22) benign(0.001) TCGA-DU-6392-01 2 108921684 108921684 C T SULT1C2 Missense_Mutation p.H198Y 0.09 tolerated(0.34) benign(0.001) TCGA-DU-6392-01 2 108921926 108921926 A - SULT1C2 Frame_Shift_Del p.T230Qfs*3 0.15 TCGA-DU-6392-01 2 109086935 109086935 G T GCC2 Nonsense_Mutation p.E384* 0.43 TCGA-DU-6392-01 2 109098228 109098228 C T GCC2 Missense_Mutation p.R1046C 0.36 deleterious(0) benign(0.065) TCGA-DU-6392-01 2 109103047 109103047 G A GCC2 Silent p.T1291T 0.41 TCGA-DU-6392-01 2 109276098 109276098 C T LIMS1 Missense_Mutation p.R74C 0.28 deleterious(0.02) probably_damaging(0.984) TCGA-DU-6392-01 2 109368449 109368449 C T RANBP2 Missense_Mutation p.T585M 0.26 tolerated(0.13) benign(0.202) TCGA-DU-6392-01 2 109383804 109383804 G T RANBP2 Missense_Mutation p.S2270I 0.34 deleterious(0) probably_damaging(0.949) TCGA-DU-6392-01 2 109405347 109405347 C T CCDC138 Missense_Mutation p.S64L 0.38 tolerated_low_confidence(0.12) possibly_damaging(0.519) TCGA-DU-6392-01 2 109411018 109411018 C A CCDC138 Silent p.T139T 0.09 TCGA-DU-6392-01 2 109513511 109513511 C T EDAR Missense_Mutation p.R400H 0.25 tolerated(0.18) probably_damaging(0.998) TCGA-DU-6392-01 2 110015264 110015264 G A SH3RF3 Silent p.T388T 0.47 TCGA-DU-6392-01 2 110065843 110065843 C A SH3RF3 Silent p.A682A 0.43 TCGA-DU-6392-01 2 11053082 11053082 C T KCNF1 Missense_Mutation p.S177L 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-DU-6392-01 2 11053347 11053347 C A KCNF1 Silent p.P265P 0.26 TCGA-DU-6392-01 2 11053694 11053694 C T KCNF1 Missense_Mutation p.T381M 0.29 tolerated(0.11) probably_damaging(0.995) TCGA-DU-6392-01 2 110907762 110907762 G T NPHP1 Silent p.P441P 0.31 TCGA-DU-6392-01 2 111398963 111398963 G A BUB1 Missense_Mutation p.L902F 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 111408165 111408165 C A BUB1 Nonsense_Mutation p.E721* 0.21 TCGA-DU-6392-01 2 112942829 112942829 G A FBLN7 Missense_Mutation p.C287Y 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 112942849 112942849 T G FBLN7 Missense_Mutation p.F294V 0.53 deleterious(0.02) probably_damaging(0.986) TCGA-DU-6392-01 2 113089840 113089840 G A ZC3H6 Silent p.A1115A 0.45 TCGA-DU-6392-01 2 113305097 113305097 C T POLR1B Missense_Mutation p.R149C 0.11 deleterious(0.01) benign(0.004) TCGA-DU-6392-01 2 113326460 113326460 C T POLR1B Silent p.N685N 0.15 TCGA-DU-6392-01 2 113343849 113343849 C T CHCHD5 Silent p.N72N 0.43 TCGA-DU-6392-01 2 113343902 113343902 C T CHCHD5 Missense_Mutation p.A90V 0.33 tolerated(0.06) benign(0.303) TCGA-DU-6392-01 2 113420496 113420496 G A SLC20A1 Missense_Mutation p.R645H 0.36 tolerated(0.16) benign(0.022) TCGA-DU-6392-01 2 11348503 11348503 C A ROCK2 Missense_Mutation p.E758D 0.23 tolerated(0.06) benign(0.411) TCGA-DU-6392-01 2 113496489 113496489 G T CKAP2L Missense_Mutation p.L717M 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-DU-6392-01 2 113514748 113514748 G T CKAP2L Missense_Mutation p.P67H 0.07 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 2 113590400 113590400 G T IL1B Missense_Mutation p.P102H 0.09 deleterious(0.02) probably_damaging(0.923) TCGA-DU-6392-01 2 113820102 113820102 G T IL36RN Missense_Mutation p.G106W 0.12 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 113831905 113831905 G A IL1F10 Splice_Site p.X11_splice 0.25 TCGA-DU-6392-01 2 113832239 113832239 G A IL1F10 Intron 0.10 TCGA-DU-6392-01 2 113993142 113993142 C T PAX8 Missense_Mutation p.A306T 0.28 tolerated(0.12) benign(0.003) TCGA-DU-6392-01 2 114210743 114210743 A C CBWD2 Missense_Mutation p.D153A 0.18 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 2 114399652 114399652 A G RABL2A Silent p.E211E 0.39 TCGA-DU-6392-01 2 114508144 114508144 T C SLC35F5 Missense_Mutation p.Y92C 0.48 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 2 11716623 11716623 C A GREB1 Missense_Mutation p.T200N 0.25 tolerated(0.13) benign(0.33) TCGA-DU-6392-01 2 11735422 11735422 C T GREB1 Missense_Mutation p.A581V 0.39 deleterious(0.01) possibly_damaging(0.804) TCGA-DU-6392-01 2 11750821 11750821 C T GREB1 Missense_Mutation p.R892C 0.50 deleterious(0) probably_damaging(0.91) TCGA-DU-6392-01 2 118577331 118577331 T C DDX18 Silent p.D159D 0.43 TCGA-DU-6392-01 2 119600595 119600595 G A EN1 Silent p.N366N 0.54 TCGA-DU-6392-01 2 120005430 120005430 T A STEAP3 Missense_Mutation p.F233Y 0.52 tolerated(0.54) possibly_damaging(0.733) TCGA-DU-6392-01 2 120388383 120388383 C T PCDP1 Missense_Mutation p.S627F 0.38 deleterious(0.04) benign(0.424) TCGA-DU-6392-01 2 120438559 120438559 T C TMEM177 Missense_Mutation p.W44R 0.08 tolerated(0.54) probably_damaging(0.999) TCGA-DU-6392-01 2 120834640 120834640 C T EPB41L5 Missense_Mutation p.A200V 0.10 tolerated(0.17) probably_damaging(0.933) TCGA-DU-6392-01 2 120889207 120889207 C A EPB41L5 Silent p.T505T 0.28 TCGA-DU-6392-01 2 121106699 121106699 G A INHBB Missense_Mutation p.R158H 0.35 tolerated(0.15) possibly_damaging(0.703) TCGA-DU-6392-01 2 121746916 121746916 G A GLI2 Missense_Mutation p.M1142I 0.27 tolerated(0.05) possibly_damaging(0.885) TCGA-DU-6392-01 2 121995414 121995414 C T TFCP2L1 Silent p.P291P 0.35 TCGA-DU-6392-01 2 122106112 122106112 G A CLASP1 Silent p.V1463V 0.44 TCGA-DU-6392-01 2 122125203 122125203 C A CLASP1 Nonsense_Mutation p.E1283* 0.41 TCGA-DU-6392-01 2 122285375 122285375 G A CLASP1 Missense_Mutation p.A157V 0.31 tolerated(0.55) benign(0.001) TCGA-DU-6392-01 2 122522801 122522801 G A TSN Missense_Mutation p.R182H 0.40 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 2 127825747 127825747 G A BIN1 Nonsense_Mutation p.R202* 0.47 TCGA-DU-6392-01 2 127944841 127944841 C A CYP27C1 3'UTR 0.09 TCGA-DU-6392-01 2 127944866 127944866 C T CYP27C1 Missense_Mutation p.R367Q 0.46 tolerated(1) benign(0.031) TCGA-DU-6392-01 2 127944867 127944867 G A CYP27C1 Nonsense_Mutation p.R367* 0.14 TCGA-DU-6392-01 2 127944964 127944964 C A CYP27C1 Splice_Site p.X335_splice 0.37 TCGA-DU-6392-01 2 128016959 128016959 C A ERCC3 Missense_Mutation p.Q710H 0.40 tolerated(0.45) benign(0.001) TCGA-DU-6392-01 2 128072388 128072388 C T MAP3K2 Silent p.Q466Q 0.32 TCGA-DU-6392-01 2 128183683 128183683 C A PROC Silent p.P186P 0.25 TCGA-DU-6392-01 2 128252448 128252448 T G IWS1 Missense_Mutation p.K600T 0.09 deleterious(0) probably_damaging(0.955) TCGA-DU-6392-01 2 128260962 128260962 C A IWS1 Splice_Site p.X470_splice 0.08 TCGA-DU-6392-01 2 128262742 128262742 C T IWS1 Missense_Mutation p.R246H 0.44 tolerated_low_confidence(0.2) benign(0.002) TCGA-DU-6392-01 2 128354116 128354116 G A MYO7B Missense_Mutation p.R775Q 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 2 128367143 128367143 G T MYO7B Missense_Mutation p.E959D 0.40 tolerated(0.45) benign(0.002) TCGA-DU-6392-01 2 128391772 128391772 A G MYO7B Missense_Mutation p.T1819A 0.64 deleterious(0.02) benign(0.03) TCGA-DU-6392-01 2 128476856 128476856 G A WDR33 Missense_Mutation p.R915W 0.06 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-DU-6392-01 2 128631594 128631594 C T AMMECR1L Missense_Mutation p.G72E 0.32 tolerated(0.19) benign(0.002) TCGA-DU-6392-01 2 128757937 128757937 G T SAP130 Missense_Mutation p.L347I 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 2 128767870 128767870 G A SAP130 Missense_Mutation p.A307V 0.21 tolerated_low_confidence(0.46) benign(0.138) TCGA-DU-6392-01 2 128900742 128900742 G A UGGT1 Silent p.P598P 0.41 TCGA-DU-6392-01 2 128922353 128922353 A G UGGT1 Missense_Mutation p.K959E 0.36 tolerated(0.09) possibly_damaging(0.579) TCGA-DU-6392-01 2 128941328 128941328 A T UGGT1 Missense_Mutation p.S1442C 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 130832316 130832316 C T POTEF Missense_Mutation p.R910H 0.39 deleterious_low_confidence(0.03) probably_damaging(0.962) TCGA-DU-6392-01 2 130897934 130897934 C T CCDC74B Missense_Mutation p.A232T 0.39 tolerated(0.26) benign(0.023) TCGA-DU-6392-01 2 131116870 131116870 C T PTPN18 Silent p.G89G 0.44 TCGA-DU-6392-01 2 131130868 131130868 C T PTPN18 3'UTR 0.58 TCGA-DU-6392-01 2 131803000 131803000 G T ARHGEF4 Missense_Mutation p.Q634H 0.11 tolerated(0.43) benign(0.008) TCGA-DU-6392-01 2 132021757 132021757 G A POTEE Missense_Mutation p.R910H 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.747) TCGA-DU-6392-01 2 132276629 132276629 C T AC093838.4 RNA 0.56 TCGA-DU-6392-01 2 133174585 133174585 C A GPR39 5'UTR 0.43 TCGA-DU-6392-01 2 133174975 133174975 C T GPR39 Silent p.Y120Y 0.44 TCGA-DU-6392-01 2 133541148 133541148 G A NCKAP5 Missense_Mutation p.T1079M 0.39 deleterious(0.05) benign(0.235) TCGA-DU-6392-01 2 133887564 133887564 C A NCKAP5 Missense_Mutation p.Q109H 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 135215669 135215669 G A TMEM163 Missense_Mutation p.A248V 0.41 tolerated(0.15) benign(0.034) TCGA-DU-6392-01 2 135616830 135616830 G T ACMSD Splice_Site p.X35_splice 0.41 TCGA-DU-6392-01 2 135696617 135696617 A C CCNT2 Missense_Mutation p.M139L 0.14 tolerated(0.39) benign(0.222) TCGA-DU-6392-01 2 135711150 135711150 C T CCNT2 Silent p.S375S 0.44 TCGA-DU-6392-01 2 135711799 135711799 G A CCNT2 Missense_Mutation p.D592N 0.42 tolerated(0.11) probably_damaging(0.995) TCGA-DU-6392-01 2 135744064 135744064 T A MAP3K19 Missense_Mutation p.E793V 0.33 deleterious(0.02) possibly_damaging(0.777) TCGA-DU-6392-01 2 135745329 135745329 C T MAP3K19 Silent p.K371K 0.32 TCGA-DU-6392-01 2 135756467 135756467 G A MAP3K19 Missense_Mutation p.R139W 0.42 tolerated(0.06) possibly_damaging(0.517) TCGA-DU-6392-01 2 136513157 136513157 C T UBXN4 Missense_Mutation p.S135F 0.47 deleterious(0.03) benign(0.309) TCGA-DU-6392-01 2 136540487 136540487 T C UBXN4 3'UTR 0.41 TCGA-DU-6392-01 2 136552211 136552211 C A LCT Missense_Mutation p.R1704I 0.10 deleterious(0.02) possibly_damaging(0.574) TCGA-DU-6392-01 2 136555613 136555613 G T LCT Silent p.G1654G 0.37 TCGA-DU-6392-01 2 136562398 136562398 G A LCT Missense_Mutation p.A1468V 0.34 tolerated(0.07) benign(0.305) TCGA-DU-6392-01 2 136594306 136594306 T C LCT Missense_Mutation p.E145G 0.13 tolerated(0.32) benign(0.004) TCGA-DU-6392-01 2 136626210 136626210 T C MCM6 Missense_Mutation p.N196D 0.11 tolerated(1) benign(0.002) TCGA-DU-6392-01 2 136633973 136633973 G A MCM6 5'UTR 0.44 TCGA-DU-6392-01 2 136872919 136872919 G A CXCR4 Silent p.D197D 0.48 TCGA-DU-6392-01 2 137814073 137814073 A G THSD7B Missense_Mutation p.T75A 0.39 deleterious(0.01) benign(0.388) TCGA-DU-6392-01 2 137814102 137814102 C T THSD7B Silent p.S84S 0.41 TCGA-DU-6392-01 2 138400110 138400110 G A THSD7B Silent p.R1287R 0.07 TCGA-DU-6392-01 2 139326694 139326694 T C SPOPL 3'UTR 0.12 TCGA-DU-6392-01 2 141072507 141072507 G A LRP1B Silent p.L4268L 0.29 TCGA-DU-6392-01 2 141072547 141072547 G A LRP1B Silent p.S4254S 0.31 TCGA-DU-6392-01 2 141232864 141232864 G A LRP1B Silent p.G3156G 0.42 TCGA-DU-6392-01 2 141259299 141259299 C T LRP1B Missense_Mutation p.S2936N 0.08 benign(0.213) TCGA-DU-6392-01 2 141298623 141298623 A G LRP1B Silent p.L2478L 0.11 TCGA-DU-6392-01 2 141460049 141460049 C T LRP1B Missense_Mutation p.V2033I 0.33 benign(0.299) TCGA-DU-6392-01 2 141460073 141460073 G A LRP1B Missense_Mutation p.R2025C 0.39 benign(0.092) TCGA-DU-6392-01 2 141641410 141641410 G A LRP1B Missense_Mutation p.A1382V 0.34 benign(0.001) TCGA-DU-6392-01 2 141665541 141665541 G T LRP1B Missense_Mutation p.P1142H 0.10 probably_damaging(0.977) TCGA-DU-6392-01 2 141707849 141707849 A G LRP1B Missense_Mutation p.C1031R 0.30 probably_damaging(0.95) TCGA-DU-6392-01 2 1418251 1418251 C T TPO Missense_Mutation p.S24L 0.56 tolerated(1) benign(0) TCGA-DU-6392-01 2 142004838 142004838 G A LRP1B Silent p.G183G 0.08 TCGA-DU-6392-01 2 142888299 142888299 T A LRP1B 5'UTR 0.36 TCGA-DU-6392-01 2 143746451 143746451 G T KYNU Intron 0.41 TCGA-DU-6392-01 2 144193179 144193179 G A ARHGAP15 Missense_Mutation p.V162I 0.48 tolerated(0.26) benign(0.003) TCGA-DU-6392-01 2 144764824 144764824 G T GTDC1 Missense_Mutation p.T267N 0.18 deleterious_low_confidence(0.04) benign(0.342) TCGA-DU-6392-01 2 145146919 145146919 C T ZEB2 3'UTR 0.23 TCGA-DU-6392-01 2 145147242 145147242 C T ZEB2 Missense_Mutation p.E1141K 0.12 tolerated(0.25) benign(0.028) TCGA-DU-6392-01 2 145156357 145156357 A G ZEB2 Silent p.S799S 0.12 TCGA-DU-6392-01 2 145158778 145158778 G A ZEB2 Nonsense_Mutation p.R302* 0.34 TCGA-DU-6392-01 2 148705697 148705697 T G ORC4 Missense_Mutation p.I229L 0.07 tolerated(0.82) benign(0.012) TCGA-DU-6392-01 2 1491744 1491744 C T TPO Silent p.G583G 0.22 TCGA-DU-6392-01 2 149227755 149227755 T C MBD5 Missense_Mutation p.V748A 0.39 tolerated(0.33) benign(0.294) TCGA-DU-6392-01 2 149240918 149240918 A G MBD5 Missense_Mutation p.S920G 0.08 tolerated(0.75) unknown(0) TCGA-DU-6392-01 2 149522544 149522544 G A EPC2 Silent p.L323L 0.32 TCGA-DU-6392-01 2 149543884 149543884 G A EPC2 Missense_Mutation p.E788K 0.40 deleterious(0.01) benign(0.358) TCGA-DU-6392-01 2 1499859 1499859 C T TPO Missense_Mutation p.T702I 0.10 deleterious(0.04) possibly_damaging(0.752) TCGA-DU-6392-01 2 150443616 150443616 G A MMADHC 5'UTR 0.27 TCGA-DU-6392-01 2 152236094 152236094 C A TNFAIP6 3'UTR 0.32 TCGA-DU-6392-01 2 152292042 152292042 G A RIF1 Silent p.S381S 0.46 TCGA-DU-6392-01 2 152410491 152410491 C T NEB Missense_Mutation p.V6493M 0.31 possibly_damaging(0.807) TCGA-DU-6392-01 2 152422294 152422294 C T NEB Missense_Mutation p.G6066D 0.31 probably_damaging(1) TCGA-DU-6392-01 2 152423688 152423688 C A NEB Missense_Mutation p.Q6050H 0.09 probably_damaging(0.994) TCGA-DU-6392-01 2 152497084 152497084 C T NEB Missense_Mutation p.A2824T 0.39 probably_damaging(1) TCGA-DU-6392-01 2 152506778 152506778 C T NEB Missense_Mutation p.R2448H 0.38 probably_damaging(1) TCGA-DU-6392-01 2 152506786 152506786 C A NEB Missense_Mutation p.K2445N 0.09 benign(0.268) TCGA-DU-6392-01 2 152507377 152507377 C T NEB Missense_Mutation p.R2313Q 0.40 probably_damaging(0.994) TCGA-DU-6392-01 2 152534196 152534196 G A NEB Silent p.A1219A 0.30 TCGA-DU-6392-01 2 152581430 152581430 C T NEB Missense_Mutation p.V150I 0.35 probably_damaging(0.981) TCGA-DU-6392-01 2 152729007 152729007 C T CACNB4 Silent p.G174G 0.38 TCGA-DU-6392-01 2 152977162 152977162 C A STAM2 Missense_Mutation p.G502C 0.41 tolerated_low_confidence(0.1) benign(0.012) TCGA-DU-6392-01 2 152988660 152988660 T C STAM2 Silent p.P331P 0.44 TCGA-DU-6392-01 2 153000472 153000472 T C STAM2 Silent p.L191L 0.35 TCGA-DU-6392-01 2 15307053 15307053 G A NBAS 3'UTR 0.19 TCGA-DU-6392-01 2 15359051 15359051 C T NBAS Missense_Mutation p.R2093Q 0.44 deleterious(0.05) probably_damaging(0.989) TCGA-DU-6392-01 2 153591515 153591515 G A ARL6IP6 Nonsense_Mutation p.W154* 0.26 TCGA-DU-6392-01 2 15378705 15378705 C T NBAS Missense_Mutation p.A1944T 0.39 tolerated(0.29) benign(0.002) TCGA-DU-6392-01 2 155307045 155307045 C T GALNT13 Silent p.N551N 0.16 TCGA-DU-6392-01 2 157184975 157184975 C T NR4A2 Missense_Mutation p.R312Q 0.36 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 2 158114767 158114767 G T GALNT5 Missense_Mutation p.R58I 0.40 deleterious(0) possibly_damaging(0.723) TCGA-DU-6392-01 2 158178124 158178124 G A ERMN Missense_Mutation p.H185Y 0.28 tolerated(0.37) benign(0.066) TCGA-DU-6392-01 2 158395160 158395160 C T ACVR1C Silent p.S427S 0.32 TCGA-DU-6392-01 2 158594104 158594104 C T ACVR1 Missense_Mutation p.R490H 0.50 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 158622483 158622483 C A ACVR1 Missense_Mutation p.S339I 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 158630609 158630609 C T ACVR1 Missense_Mutation p.E212K 0.42 deleterious(0) possibly_damaging(0.832) TCGA-DU-6392-01 2 158971709 158971709 G T UPP2 Missense_Mutation p.D150Y 0.46 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 158991263 158991263 C T UPP2 Missense_Mutation p.A329V 0.12 deleterious(0.01) benign(0.126) TCGA-DU-6392-01 2 159195527 159195527 T G CCDC148 Missense_Mutation p.N186T 0.10 tolerated(0.1) possibly_damaging(0.859) TCGA-DU-6392-01 2 159536950 159536950 C A PKP4 Missense_Mutation p.L1114M 0.33 tolerated(0.14) possibly_damaging(0.836) TCGA-DU-6392-01 2 160027192 160027192 C T TANC1 Silent p.G409G 0.47 TCGA-DU-6392-01 2 160028716 160028716 C A TANC1 Missense_Mutation p.P479H 0.10 tolerated(0.06) benign(0.002) TCGA-DU-6392-01 2 160055501 160055501 C T TANC1 Silent p.L1061L 0.27 TCGA-DU-6392-01 2 160074022 160074022 G A TANC1 Missense_Mutation p.A1087T 0.32 deleterious(0.02) benign(0.415) TCGA-DU-6392-01 2 160092648 160092648 G A WDSUB1 Missense_Mutation p.R443C 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 2 160136380 160136380 A T WDSUB1 Missense_Mutation p.S159T 0.10 tolerated(0.77) probably_damaging(0.999) TCGA-DU-6392-01 2 160229666 160229666 G A BAZ2B Missense_Mutation p.A1368V 0.42 benign(0.372) TCGA-DU-6392-01 2 160599690 160599690 G T MARCH7 Missense_Mutation p.R91I 0.11 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 2 160605353 160605353 A T MARCH7 Missense_Mutation p.S518C 0.37 deleterious(0.03) possibly_damaging(0.75) TCGA-DU-6392-01 2 160750522 160750522 A C LY75-CD302 Missense_Mutation p.H180Q 0.07 deleterious(0) probably_damaging(0.944) TCGA-DU-6392-01 2 160964245 160964245 T C ITGB6 Missense_Mutation p.D738G 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 160993949 160993949 G A ITGB6 Silent p.C552C 0.41 TCGA-DU-6392-01 2 160994116 160994116 G T ITGB6 Missense_Mutation p.L497M 0.10 tolerated(0.23) benign(0.013) TCGA-DU-6392-01 2 160998528 160998528 C T ITGB6 Missense_Mutation p.G358R 0.36 tolerated(0.52) benign(0.126) TCGA-DU-6392-01 2 161159998 161159998 G A RBMS1 Nonsense_Mutation p.Q135* 0.09 TCGA-DU-6392-01 2 162092097 162092097 T C TANK 3'UTR 0.44 TCGA-DU-6392-01 2 162903928 162903928 A G DPP4 Silent p.L60L 0.30 TCGA-DU-6392-01 2 163136557 163136557 G A IFIH1 Silent p.N530N 0.42 TCGA-DU-6392-01 2 163215567 163215567 T C GCA Silent p.S156S 0.35 TCGA-DU-6392-01 2 163291736 163291736 G T KCNH7 Silent p.I642I 0.12 TCGA-DU-6392-01 2 163291760 163291760 A T KCNH7 Silent p.S634S 0.47 TCGA-DU-6392-01 2 163374646 163374646 G A KCNH7 Silent p.F162F 0.43 TCGA-DU-6392-01 2 1642691 1642691 T G PXDN Missense_Mutation p.D1378A 0.39 tolerated(0.41) benign(0.01) TCGA-DU-6392-01 2 164468291 164468291 C A FIGN Missense_Mutation p.E17D 0.36 deleterious(0.01) probably_damaging(0.935) TCGA-DU-6392-01 2 165947770 165947770 G A SCN3A Silent p.I1631I 0.44 TCGA-DU-6392-01 2 165986519 165986519 A G SCN3A Silent p.C951C 0.38 TCGA-DU-6392-01 2 165986696 165986696 G A SCN3A Silent p.I892I 0.45 TCGA-DU-6392-01 2 165997339 165997339 G A SCN3A Missense_Mutation p.P614L 0.48 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 2 166152580 166152580 C T SCN2A Missense_Mutation p.P83S 0.42 deleterious(0.02) benign(0.168) TCGA-DU-6392-01 2 166179943 166179943 G A SCN2A Missense_Mutation p.C650Y 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-DU-6392-01 2 166245552 166245552 T C SCN2A Missense_Mutation p.C1746R 0.10 deleterious(0) benign(0.05) TCGA-DU-6392-01 2 166514426 166514426 C T CSRNP3 Missense_Mutation p.R102C 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-DU-6392-01 2 166532972 166532972 C T CSRNP3 Missense_Mutation p.R187C 0.38 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 2 166535949 166535949 C T CSRNP3 Nonsense_Mutation p.R482* 0.46 TCGA-DU-6392-01 2 166737287 166737287 T C TTC21B Missense_Mutation p.Y1236C 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 2 166747469 166747469 C T TTC21B Missense_Mutation p.D994N 0.41 deleterious(0.02) possibly_damaging(0.694) TCGA-DU-6392-01 2 166847988 166847988 G A SCN1A Nonsense_Mutation p.R1933* 0.39 TCGA-DU-6392-01 2 166848361 166848361 G T SCN1A Missense_Mutation p.F1808L 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 2 167168078 167168078 A G SCN9A Silent p.Y63Y 0.30 TCGA-DU-6392-01 2 1677432 1677432 C A PXDN Missense_Mutation p.R334M 0.35 deleterious(0.01) probably_damaging(0.964) TCGA-DU-6392-01 2 168103716 168103716 G T XIRP2 Missense_Mutation p.E1938D 0.12 benign(0.022) TCGA-DU-6392-01 2 168106741 168106741 T G XIRP2 Missense_Mutation p.F2947V 0.12 possibly_damaging(0.904) TCGA-DU-6392-01 2 168107137 168107137 A G XIRP2 Missense_Mutation p.T3079A 0.14 benign(0.009) TCGA-DU-6392-01 2 168114997 168114997 C T XIRP2 3'UTR 0.52 TCGA-DU-6392-01 2 168115079 168115080 - A XIRP2 3'UTR 0.22 TCGA-DU-6392-01 2 168115641 168115641 T C XIRP2 3'UTR 0.13 TCGA-DU-6392-01 2 169717336 169717336 G A NOSTRIN Missense_Mutation p.R461Q 0.31 tolerated(0.08) benign(0.356) TCGA-DU-6392-01 2 169745979 169745979 C T SPC25 Nonsense_Mutation p.W17* 0.42 TCGA-DU-6392-01 2 169764605 169764605 T C G6PC2 3'UTR 0.42 TCGA-DU-6392-01 2 170012830 170012830 G T LRP2 Silent p.G4035G 0.09 TCGA-DU-6392-01 2 170013930 170013930 G T LRP2 Silent p.S3990S 0.33 TCGA-DU-6392-01 2 170062575 170062575 C T LRP2 Missense_Mutation p.R2505H 0.42 benign(0.002) TCGA-DU-6392-01 2 170094773 170094773 T G LRP2 Missense_Mutation p.K1445T 0.06 benign(0.027) TCGA-DU-6392-01 2 170103217 170103217 A T LRP2 Missense_Mutation p.L1063H 0.40 benign(0.005) TCGA-DU-6392-01 2 170175364 170175364 T G LRP2 Missense_Mutation p.K73T 0.20 benign(0.063) TCGA-DU-6392-01 2 170177288 170177288 G A LRP2 Silent p.C62C 0.42 TCGA-DU-6392-01 2 170344594 170344594 G T BBS5 Missense_Mutation p.R119I 0.42 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 2 170374879 170374879 C T KLHL41 Missense_Mutation p.T519I 0.39 deleterious(0.04) benign(0.177) TCGA-DU-6392-01 2 170382175 170382175 G A KLHL41 Missense_Mutation p.R597H 0.28 deleterious(0.03) benign(0.137) TCGA-DU-6392-01 2 170471162 170471162 A G PPIG Missense_Mutation p.T159A 0.47 deleterious(0) possibly_damaging(0.868) TCGA-DU-6392-01 2 170489682 170489682 C A PPIG Missense_Mutation p.N314K 0.31 deleterious(0.02) unknown(0) TCGA-DU-6392-01 2 170492668 170492668 T C PPIG Missense_Mutation p.W362R 0.08 deleterious(0) unknown(0) TCGA-DU-6392-01 2 170494102 170494102 C A PPIG 3'UTR 0.29 TCGA-DU-6392-01 2 170537695 170537695 G T CCDC173 Missense_Mutation p.P39H 0.11 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 2 171034689 171034689 A G MYO3B 5'UTR 0.46 TCGA-DU-6392-01 2 171256710 171256710 G T MYO3B Missense_Mutation p.V602L 0.29 tolerated(0.06) benign(0.1) TCGA-DU-6392-01 2 171675163 171675163 C T GAD1 Missense_Mutation p.T21I 0.27 tolerated_low_confidence(0.1) benign(0.069) TCGA-DU-6392-01 2 171702114 171702114 C A GAD1 Missense_Mutation p.L284I 0.38 tolerated(0.29) possibly_damaging(0.81) TCGA-DU-6392-01 2 171822309 171822309 C A GORASP2 Missense_Mutation p.P343H 0.08 tolerated(0.06) probably_damaging(0.953) TCGA-DU-6392-01 2 171822497 171822497 G A GORASP2 Missense_Mutation p.A406T 0.33 tolerated_low_confidence(0.34) benign(0.226) TCGA-DU-6392-01 2 172016963 172016964 - C TLK1 5'UTR 0.35 TCGA-DU-6392-01 2 172379134 172379134 G A CYBRD1 Missense_Mutation p.A27T 0.22 tolerated(1) benign(0.001) TCGA-DU-6392-01 2 172398115 172398115 C T CYBRD1 Missense_Mutation p.P72S 0.28 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 172398116 172398116 C T CYBRD1 Missense_Mutation p.P72L 0.29 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 2 172809432 172809432 C A HAT1 Silent p.I74I 0.33 TCGA-DU-6392-01 2 172821917 172821917 C T HAT1 Missense_Mutation p.T123M 0.08 deleterious(0.03) benign(0.028) TCGA-DU-6392-01 2 172848174 172848174 G T HAT1 Nonsense_Mutation p.E390* 0.46 TCGA-DU-6392-01 2 172965582 172965582 C T DLX2 Missense_Mutation p.A226T 0.43 tolerated(0.08) benign(0.012) TCGA-DU-6392-01 2 173332215 173332215 C T ITGA6 Missense_Mutation p.P105L 0.31 tolerated(0.75) benign(0.03) TCGA-DU-6392-01 2 173337563 173337563 G A ITGA6 Intron 0.29 TCGA-DU-6392-01 2 173339741 173339741 G T ITGA6 Missense_Mutation p.Q357H 0.34 deleterious(0.01) possibly_damaging(0.847) TCGA-DU-6392-01 2 173344431 173344431 G A ITGA6 Missense_Mutation p.R484H 0.40 tolerated(0.06) benign(0.005) TCGA-DU-6392-01 2 173825907 173825907 C T RAPGEF4 Nonsense_Mutation p.R217* 0.43 TCGA-DU-6392-01 2 173900869 173900869 A G RAPGEF4 Missense_Mutation p.H906R 0.07 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 2 174131150 174131150 C A MLTK Missense_Mutation p.P692H 0.12 tolerated_low_confidence(0.1) possibly_damaging(0.576) TCGA-DU-6392-01 2 174777882 174777882 G A SP3 Missense_Mutation p.R649C 0.38 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 2 174819870 174819870 G T SP3 Missense_Mutation p.P457H 0.14 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 2 175301093 175301093 G T GPR155 Missense_Mutation p.S788R 0.42 deleterious(0.01) benign(0.016) TCGA-DU-6392-01 2 175301145 175301145 C A GPR155 Splice_Site p.X771_splice 0.32 TCGA-DU-6392-01 2 175346648 175346648 C T GPR155 Missense_Mutation p.A13T 0.36 tolerated_low_confidence(0.23) benign(0.001) TCGA-DU-6392-01 2 175431873 175431873 C T WIPF1 Missense_Mutation p.D461N 0.29 deleterious(0) benign(0.132) TCGA-DU-6392-01 2 175440048 175440048 C A WIPF1 Missense_Mutation p.G81V 0.36 tolerated(0.11) benign(0.075) TCGA-DU-6392-01 2 175613338 175613338 C A CHRNA1 Missense_Mutation p.E429D 0.10 tolerated(0.33) benign(0.069) TCGA-DU-6392-01 2 175618430 175618430 G A CHRNA1 Silent p.S218S 0.45 TCGA-DU-6392-01 2 176964817 176964817 G A HOXD12 Silent p.E96E 0.33 TCGA-DU-6392-01 2 17698269 17698269 C T RAD51AP2 Missense_Mutation p.A472T 0.09 tolerated(0.64) benign(0.038) TCGA-DU-6392-01 2 176996304 176996304 G T HOXD8 Missense_Mutation p.E279D 0.34 tolerated(0.56) benign(0) TCGA-DU-6392-01 2 177054165 177054165 G A HOXD1 Silent p.R212R 0.20 TCGA-DU-6392-01 2 177054915 177054915 G T HOXD1 3'UTR 0.43 TCGA-DU-6392-01 2 178326678 178326678 G A AGPS Missense_Mutation p.V310I 0.13 tolerated(0.05) benign(0.062) TCGA-DU-6392-01 2 178415540 178415540 C A TTC30B Missense_Mutation p.R651M 0.26 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 2 178416646 178416646 C A TTC30B Missense_Mutation p.E282D 0.09 tolerated(0.07) probably_damaging(0.983) TCGA-DU-6392-01 2 17888593 17888593 A G SMC6 Silent p.C633C 0.44 TCGA-DU-6392-01 2 17889964 17889964 G A SMC6 Missense_Mutation p.A596V 0.39 tolerated(0.12) benign(0.077) TCGA-DU-6392-01 2 178936974 178936974 C A PDE11A Missense_Mutation p.S64I 0.24 tolerated(0.13) benign(0) TCGA-DU-6392-01 2 178969154 178969154 C T CYCTP RNA 0.09 TCGA-DU-6392-01 2 17902486 17902486 G A SMC6 Missense_Mutation p.R257C 0.48 tolerated(0.12) benign(0.189) TCGA-DU-6392-01 2 179238699 179238699 C A OSBPL6 Missense_Mutation p.S518Y 0.39 tolerated(0.07) probably_damaging(0.999) TCGA-DU-6392-01 2 179247887 179247887 C A OSBPL6 Silent p.V611V 0.12 TCGA-DU-6392-01 2 179308017 179308017 C T PRKRA Missense_Mutation p.R164K 0.25 tolerated(0.15) benign(0.26) TCGA-DU-6392-01 2 179325155 179325155 A G DFNB59 Missense_Mutation p.N250D 0.13 tolerated(0.3) benign(0.084) TCGA-DU-6392-01 2 179403356 179403356 G T TTN Missense_Mutation p.T33067N 0.40 TCGA-DU-6392-01 2 179403465 179403465 G A TTN Missense_Mutation p.L33031F 0.32 TCGA-DU-6392-01 2 179409203 179409203 A G TTN Missense_Mutation p.V31918A 0.08 TCGA-DU-6392-01 2 179413090 179413090 A G TTN Missense_Mutation p.F31088S 0.09 TCGA-DU-6392-01 2 179414088 179414088 G A TTN Silent p.I30755I 0.28 TCGA-DU-6392-01 2 179418746 179418746 G A TTN Missense_Mutation p.L29698F 0.33 TCGA-DU-6392-01 2 179419209 179419209 G T TTN Missense_Mutation p.S29622Y 0.30 TCGA-DU-6392-01 2 179419595 179419595 G T TTN Missense_Mutation p.L29531I 0.24 TCGA-DU-6392-01 2 179424591 179424591 A G TTN Silent p.I28756I 0.09 TCGA-DU-6392-01 2 179427755 179427755 G A TTN Nonsense_Mutation p.R27702* 0.43 TCGA-DU-6392-01 2 179428603 179428603 T C TTN Missense_Mutation p.Q27419R 0.10 TCGA-DU-6392-01 2 179429822 179429822 G A TTN Nonsense_Mutation p.R27013* 0.35 TCGA-DU-6392-01 2 179433764 179433764 G A TTN Missense_Mutation p.P25699S 0.45 TCGA-DU-6392-01 2 179435367 179435367 G A TTN Silent p.D25164D 0.34 TCGA-DU-6392-01 2 179436581 179436581 T C TTN Missense_Mutation p.T24760A 0.34 TCGA-DU-6392-01 2 179438273 179438273 G A TTN Missense_Mutation p.R24196C 0.40 TCGA-DU-6392-01 2 179446359 179446359 T C TTN Silent p.L22212L 0.25 TCGA-DU-6392-01 2 179452805 179452805 G A TTN Missense_Mutation p.A21110V 0.49 TCGA-DU-6392-01 2 179453593 179453593 T C TTN Silent p.K20953K 0.27 TCGA-DU-6392-01 2 179455593 179455593 C T TTN Missense_Mutation p.A20287T 0.45 TCGA-DU-6392-01 2 179456584 179456584 C A TTN Missense_Mutation p.D19988Y 0.38 TCGA-DU-6392-01 2 17946245 17946245 G A GEN1 Missense_Mutation p.A144T 0.36 deleterious(0) probably_damaging(0.967) TCGA-DU-6392-01 2 17946267 17946267 G A GEN1 Missense_Mutation p.C151Y 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 179467258 179467258 G T TTN Missense_Mutation p.L18291I 0.44 TCGA-DU-6392-01 2 179474164 179474164 C A TTN Missense_Mutation p.E17291D 0.23 TCGA-DU-6392-01 2 179476842 179476842 G A TTN Nonsense_Mutation p.R16766* 0.40 TCGA-DU-6392-01 2 179477749 179477749 A G TTN Missense_Mutation p.S16567P 0.46 TCGA-DU-6392-01 2 179478634 179478634 G T TTN Missense_Mutation p.P16459H 0.36 TCGA-DU-6392-01 2 179483176 179483176 A C TTN Missense_Mutation p.F15670C 0.36 TCGA-DU-6392-01 2 179494054 179494054 C A TTN Missense_Mutation p.G14800W 0.11 TCGA-DU-6392-01 2 179495647 179495647 G A TTN Missense_Mutation p.P14680S 0.40 TCGA-DU-6392-01 2 179499996 179499996 C T TTN Missense_Mutation p.V13974I 0.33 TCGA-DU-6392-01 2 179500774 179500774 C T TTN Missense_Mutation p.A13842T 0.09 TCGA-DU-6392-01 2 179500811 179500811 G A TTN Silent p.G13829G 0.31 TCGA-DU-6392-01 2 179528763 179528763 G A TTN Missense_Mutation p.P12115S 0.33 TCGA-DU-6392-01 2 179542594 179542594 C T TTN Missense_Mutation p.E11349K 0.35 TCGA-DU-6392-01 2 179553506 179553506 C T TTN Splice_Site p.X10699_splice 0.55 TCGA-DU-6392-01 2 179574469 179574469 G A TTN Missense_Mutation p.A9526V 0.31 TCGA-DU-6392-01 2 1795747 1795747 G A MYT1L Silent p.Y1149Y 0.40 TCGA-DU-6392-01 2 179576705 179576705 T C TTN Silent p.G9284G 0.10 TCGA-DU-6392-01 2 179577432 179577432 T C TTN Missense_Mutation p.Y9107C 0.39 TCGA-DU-6392-01 2 179581942 179581942 C T TTN Missense_Mutation p.V8507I 0.30 TCGA-DU-6392-01 2 179582375 179582375 G T TTN Missense_Mutation p.S8409Y 0.40 TCGA-DU-6392-01 2 179583670 179583670 G T TTN Missense_Mutation p.S8086Y 0.52 TCGA-DU-6392-01 2 179584372 179584372 G T TTN Silent p.P7949P 0.10 TCGA-DU-6392-01 2 179587193 179587193 G A TTN Nonsense_Mutation p.R7441* 0.29 TCGA-DU-6392-01 2 179587650 179587650 C T TTN Missense_Mutation p.V7326I 0.23 TCGA-DU-6392-01 2 179588275 179588275 G A TTN Silent p.N7184N 0.17 TCGA-DU-6392-01 2 179590617 179590617 G A TTN Missense_Mutation p.S6811F 0.52 TCGA-DU-6392-01 2 179592328 179592328 C T TTN Silent p.T6659T 0.40 TCGA-DU-6392-01 2 179603981 179603981 G A TTN Missense_Mutation p.T4660M 0.30 TCGA-DU-6392-01 2 179605020 179605020 C T TTN Missense_Mutation p.A4314T 0.49 TCGA-DU-6392-01 2 179606116 179606116 G T TTN Silent p.R3948R 0.09 TCGA-DU-6392-01 2 179606396 179606396 A C TTN Missense_Mutation p.F3855C 0.38 TCGA-DU-6392-01 2 179616403 179616403 G T TTN Intron 0.10 TCGA-DU-6392-01 2 179621439 179621439 C A TTN Missense_Mutation p.K3588N 0.13 TCGA-DU-6392-01 2 179638407 179638407 C T TTN Missense_Mutation p.G2459D 0.08 TCGA-DU-6392-01 2 179639038 179639038 C T TTN Missense_Mutation p.R2318H 0.11 TCGA-DU-6392-01 2 179640431 179640431 C T TTN Missense_Mutation p.A2054T 0.40 TCGA-DU-6392-01 2 179640599 179640599 G A TTN Missense_Mutation p.R1998C 0.34 TCGA-DU-6392-01 2 179644603 179644603 G A TTN Intron 0.38 TCGA-DU-6392-01 2 179650454 179650454 C A TTN Missense_Mutation p.D796Y 0.09 TCGA-DU-6392-01 2 179658255 179658255 G A TTN Missense_Mutation p.A471V 0.25 TCGA-DU-6392-01 2 179720988 179720989 - T CCDC141 Frame_Shift_Ins p.M954Nfs*12 0.22 TCGA-DU-6392-01 2 179982307 179982307 C A SESTD1 Missense_Mutation p.K492N 0.36 deleterious(0) probably_damaging(0.963) TCGA-DU-6392-01 2 180008500 180008500 C T SESTD1 Missense_Mutation p.R223H 0.35 deleterious(0.02) possibly_damaging(0.579) TCGA-DU-6392-01 2 180383346 180383346 G A ZNF385B Missense_Mutation p.A139V 0.45 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 2 180851516 180851516 G A CWC22 Nonsense_Mutation p.R38* 0.22 TCGA-DU-6392-01 2 18113005 18113005 G A KCNS3 Missense_Mutation p.A244T 0.35 tolerated(0.07) possibly_damaging(0.728) TCGA-DU-6392-01 2 182412565 182412565 C T CERKL Silent p.Q407Q 0.38 TCGA-DU-6392-01 2 182780677 182780677 C A SSFA2 Silent p.S770S 0.10 TCGA-DU-6392-01 2 183699582 183699582 G A FRZB Silent p.R324R 0.29 TCGA-DU-6392-01 2 183702695 183702695 C T FRZB Missense_Mutation p.R281Q 0.33 tolerated(0.71) probably_damaging(0.926) TCGA-DU-6392-01 2 183792952 183792952 G A NCKAP1 Missense_Mutation p.H1031Y 0.34 tolerated(0.26) benign(0.001) TCGA-DU-6392-01 2 183853816 183853816 G A NCKAP1 Missense_Mutation p.R303W 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 183995273 183995273 G A NUP35 Silent p.Q113Q 0.38 TCGA-DU-6392-01 2 1855461 1855461 C T MYT1L Missense_Mutation p.G907D 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 185802362 185802362 C T ZNF804A Missense_Mutation p.H747Y 0.31 tolerated(1) benign(0) TCGA-DU-6392-01 2 186673090 186673090 G A FSIP2 Missense_Mutation p.A6442T 0.25 probably_damaging(0.999) TCGA-DU-6392-01 2 18745165 18745165 A G NT5C1B Missense_Mutation p.I577T 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 187466773 187466773 C T ITGAV Missense_Mutation p.P71S 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 187495528 187495528 T A ITGAV Missense_Mutation p.D176E 0.08 tolerated(1) benign(0) TCGA-DU-6392-01 2 187626631 187626631 C T FAM171B Missense_Mutation p.A521V 0.27 tolerated(0.62) benign(0.001) TCGA-DU-6392-01 2 187627518 187627518 C T FAM171B Nonsense_Mutation p.R817* 0.37 TCGA-DU-6392-01 2 18764135 18764135 G A NT5C1B Silent p.Y400Y 0.09 TCGA-DU-6392-01 2 18766032 18766032 G T NT5C1B Silent p.A217A 0.29 TCGA-DU-6392-01 2 187693297 187693297 C T ZSWIM2 Missense_Mutation p.G439E 0.37 tolerated(0.12) benign(0.058) TCGA-DU-6392-01 2 187693346 187693346 C A ZSWIM2 Missense_Mutation p.D423Y 0.08 deleterious(0) benign(0.115) TCGA-DU-6392-01 2 187698684 187698684 T C ZSWIM2 Missense_Mutation p.T273A 0.39 tolerated(0.74) benign(0.003) TCGA-DU-6392-01 2 187702251 187702251 T - ZSWIM2 Frame_Shift_Del p.K175Nfs*3 0.29 TCGA-DU-6392-01 2 1891356 1891356 T A MYT1L Missense_Mutation p.E847V 0.26 deleterious(0.03) possibly_damaging(0.84) TCGA-DU-6392-01 2 189839173 189839173 T G COL3A1 5'UTR 0.60 TCGA-DU-6392-01 2 189868847 189868847 C T COL3A1 Missense_Mutation p.S934L 0.33 possibly_damaging(0.815) TCGA-DU-6392-01 2 189899862 189899862 T C COL5A2 Missense_Mutation p.Q1378R 0.09 unknown(0) TCGA-DU-6392-01 2 190331306 190331306 A G WDR75 Missense_Mutation p.Y482C 0.41 tolerated(0.08) possibly_damaging(0.827) TCGA-DU-6392-01 2 190338996 190338996 G A WDR75 Missense_Mutation p.E712K 0.45 tolerated(0.82) benign(0.003) TCGA-DU-6392-01 2 190340124 190340124 G A WDR75 Missense_Mutation p.S825N 0.25 deleterious(0.04) probably_damaging(0.979) TCGA-DU-6392-01 2 190428487 190428487 G A SLC40A1 Nonsense_Mutation p.R409* 0.41 TCGA-DU-6392-01 2 190530910 190530910 G A ASNSD1 Missense_Mutation p.D18N 0.35 tolerated(0.14) benign(0.002) TCGA-DU-6392-01 2 190531984 190531984 A G ASNSD1 Missense_Mutation p.N376D 0.33 tolerated(0.59) benign(0.022) TCGA-DU-6392-01 2 190585463 190585463 G T ANKAR Missense_Mutation p.R862I 0.34 tolerated(0.07) benign(0.002) TCGA-DU-6392-01 2 190718693 190718693 G A PMS1 Missense_Mutation p.C284Y 0.30 tolerated(0.98) benign(0.026) TCGA-DU-6392-01 2 190719533 190719533 T C PMS1 Missense_Mutation p.I512T 0.13 deleterious(0) benign(0.119) TCGA-DU-6392-01 2 190924926 190924926 C T MSTN Nonsense_Mutation p.W203* 0.30 TCGA-DU-6392-01 2 190926970 190926970 A C MSTN Missense_Mutation p.I118S 0.13 deleterious(0) possibly_damaging(0.544) TCGA-DU-6392-01 2 191116931 191116931 A G HIBCH Missense_Mutation p.V207A 0.26 tolerated(0.09) possibly_damaging(0.603) TCGA-DU-6392-01 2 1914072 1914072 T C MYT1L Missense_Mutation p.Q584R 0.23 tolerated(0.07) possibly_damaging(0.614) TCGA-DU-6392-01 2 191848459 191848459 G T STAT1 Missense_Mutation p.S452Y 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 191874731 191874731 C A STAT1 Splice_Site 0.12 TCGA-DU-6392-01 2 191897813 191897813 C T STAT4 Missense_Mutation p.A639T 0.47 tolerated(0.14) possibly_damaging(0.905) TCGA-DU-6392-01 2 191929597 191929597 G A STAT4 Missense_Mutation p.R240W 0.05 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 192701419 192701419 C T SDPR Missense_Mutation p.V170M 0.48 tolerated(0.07) probably_damaging(1) TCGA-DU-6392-01 2 192863836 192863836 G A TMEFF2 Missense_Mutation p.S212L 0.41 deleterious(0.03) possibly_damaging(0.68) TCGA-DU-6392-01 2 19553015 19553015 G T OSR1 Missense_Mutation p.F184L 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 196642621 196642621 C T DNAH7 Missense_Mutation p.R3656H 0.34 tolerated(0.35) benign(0.005) TCGA-DU-6392-01 2 196651789 196651789 T G DNAH7 Missense_Mutation p.E3608A 0.40 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 2 196674469 196674469 C T DNAH7 Silent p.A3296A 0.39 TCGA-DU-6392-01 2 196728882 196728882 G A DNAH7 Silent p.D2499D 0.50 TCGA-DU-6392-01 2 196729638 196729638 C T DNAH7 Silent p.E2247E 0.36 TCGA-DU-6392-01 2 197021347 197021347 T C STK17B Missense_Mutation p.I51V 0.40 tolerated(0.91) benign(0.003) TCGA-DU-6392-01 2 197081742 197081742 C A HECW2 Missense_Mutation p.R1495M 0.08 deleterious(0) possibly_damaging(0.907) TCGA-DU-6392-01 2 197106830 197106830 C T HECW2 Missense_Mutation p.G1210R 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 2 197511104 197511104 C T CCDC150 Missense_Mutation p.P18S 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 2 197511119 197511119 G A CCDC150 Missense_Mutation p.A23T 0.39 tolerated(0.08) probably_damaging(0.999) TCGA-DU-6392-01 2 197990716 197990716 T C ANKRD44 Missense_Mutation p.R103G 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 198265071 198265071 C T SF3B1 Missense_Mutation p.V936I 0.46 tolerated(1) benign(0.001) TCGA-DU-6392-01 2 198266178 198266178 A C SF3B1 Missense_Mutation p.F814L 0.09 deleterious(0.01) possibly_damaging(0.899) TCGA-DU-6392-01 2 198273264 198273264 T C SF3B1 Missense_Mutation p.T316A 0.13 tolerated(0.96) benign(0.006) TCGA-DU-6392-01 2 1982978 1982978 G A MYT1L Silent p.D37D 0.42 TCGA-DU-6392-01 2 198358920 198358920 G A HSPD1 Nonsense_Mutation p.R221* 0.34 TCGA-DU-6392-01 2 198508985 198508985 G A RFTN2 Missense_Mutation p.S112L 0.30 tolerated(0.22) benign(0.01) TCGA-DU-6392-01 2 198948636 198948636 A G PLCL1 Missense_Mutation p.N132S 0.29 tolerated(0.54) benign(0.004) TCGA-DU-6392-01 2 198949212 198949212 C A PLCL1 Missense_Mutation p.S324Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 2 200136824 200136825 - A SATB2 3'UTR 0.35 TCGA-DU-6392-01 2 200136880 200136880 T C SATB2 3'UTR 0.12 TCGA-DU-6392-01 2 20130200 20130200 C T WDR35 Silent p.Q1037Q 0.39 TCGA-DU-6392-01 2 20137546 20137546 C A WDR35 Missense_Mutation p.R753M 0.22 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 2 201434397 201434397 C A SGOL2 Missense_Mutation p.T162N 0.37 deleterious(0.03) possibly_damaging(0.589) TCGA-DU-6392-01 2 201524722 201524722 C T AOX1 Missense_Mutation p.A1102V 0.20 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 201531428 201531428 G C AOX1 Missense_Mutation p.V1188L 0.11 deleterious(0) possibly_damaging(0.789) TCGA-DU-6392-01 2 20160376 20160376 C A WDR35 Splice_Site p.X410_splice 0.30 TCGA-DU-6392-01 2 201722764 201722764 G T CLK1 Nonsense_Mutation p.Y241* 0.13 TCGA-DU-6392-01 2 201800547 201800547 C T ORC2 Missense_Mutation p.A195T 0.36 tolerated(0.5) benign(0.004) TCGA-DU-6392-01 2 201846100 201846100 G A FAM126B Missense_Mutation p.R496W 0.45 deleterious(0.01) probably_damaging(0.92) TCGA-DU-6392-01 2 201887581 201887581 A G FAM126B Silent p.Y42Y 0.26 TCGA-DU-6392-01 2 201994556 201994556 G T CFLAR 5'UTR 0.36 TCGA-DU-6392-01 2 202003590 202003590 G A CFLAR Intron 0.31 TCGA-DU-6392-01 2 202025238 202025238 C A CFLAR Missense_Mutation p.L293I 0.33 tolerated(0.08) probably_damaging(0.954) TCGA-DU-6392-01 2 202082435 202082435 C A CASP10 Missense_Mutation p.P514T 0.34 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 202082471 202082471 G T CASP10 3'UTR 0.22 TCGA-DU-6392-01 2 202153498 202153498 C A ALS2CR12 Missense_Mutation p.K406N 0.36 deleterious(0) probably_damaging(0.913) TCGA-DU-6392-01 2 202343240 202343240 G A STRADB Missense_Mutation p.R329Q 0.27 tolerated(0.19) probably_damaging(0.924) TCGA-DU-6392-01 2 202412287 202412287 C A ALS2CR11 Missense_Mutation p.D342Y 0.32 deleterious(0) possibly_damaging(0.576) TCGA-DU-6392-01 2 202467966 202467966 G A ALS2CR11 Silent p.C117C 0.33 TCGA-DU-6392-01 2 202483717 202483717 G A ALS2CR11 Missense_Mutation p.S46L 0.45 tolerated(0.14) possibly_damaging(0.85) TCGA-DU-6392-01 2 202494502 202494502 C T TMEM237 Silent p.K209K 0.31 TCGA-DU-6392-01 2 202549852 202549852 C T MPP4 Missense_Mutation p.R170H 0.25 deleterious(0) probably_damaging(0.959) TCGA-DU-6392-01 2 202569277 202569278 - A ALS2 Frame_Shift_Ins p.E1580* 0.28 TCGA-DU-6392-01 2 202622249 202622249 G A ALS2 Silent p.S449S 0.31 TCGA-DU-6392-01 2 202900121 202900121 C T FZD7 Missense_Mutation p.R251C 0.46 deleterious(0.01) possibly_damaging(0.849) TCGA-DU-6392-01 2 202900492 202900492 C T FZD7 Silent p.I374I 0.11 TCGA-DU-6392-01 2 203589718 203589718 G T FAM117B Missense_Mutation p.D278Y 0.10 deleterious(0) possibly_damaging(0.906) TCGA-DU-6392-01 2 203630268 203630268 C A FAM117B Silent p.I517I 0.08 TCGA-DU-6392-01 2 203760929 203760929 G A WDR12 Silent p.C156C 0.26 TCGA-DU-6392-01 2 203807607 203807607 G A CARF Missense_Mutation p.A75T 0.10 tolerated_low_confidence(0.34) benign(0.014) TCGA-DU-6392-01 2 204000598 204000599 - A NBEAL1 Frame_Shift_Ins p.T1311Nfs*3 0.27 TCGA-DU-6392-01 2 204001395 204001395 C A NBEAL1 Missense_Mutation p.S1459Y 0.41 deleterious(0.04) possibly_damaging(0.495) TCGA-DU-6392-01 2 204143395 204143395 A G CYP20A1 Missense_Mutation p.N260S 0.36 tolerated(0.43) benign(0.004) TCGA-DU-6392-01 2 204255867 204255867 G A ABI2 Splice_Site p.X187_splice 0.33 TCGA-DU-6392-01 2 204599533 204599533 G A CD28 Silent p.L187L 0.33 TCGA-DU-6392-01 2 204824443 204824443 G T ICOS 3'UTR 0.55 TCGA-DU-6392-01 2 205983694 205983694 C T PARD3B Missense_Mutation p.R244W 0.37 deleterious(0) probably_damaging(0.924) TCGA-DU-6392-01 2 206614470 206614470 C T NRP2 Missense_Mutation p.T603M 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 2 206872026 206872026 C A INO80D Missense_Mutation p.D634Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 2 207006690 207006690 G A NDUFS1 Silent p.L427L 0.33 TCGA-DU-6392-01 2 207017192 207017192 A T NDUFS1 Missense_Mutation p.F49Y 0.08 tolerated(0.21) benign(0.381) TCGA-DU-6392-01 2 207041404 207041404 T C GPR1 Missense_Mutation p.N190D 0.51 deleterious(0.01) probably_damaging(0.997) TCGA-DU-6392-01 2 207173681 207173681 G A ZDBF2 Missense_Mutation p.D1477N 0.38 tolerated(1) possibly_damaging(0.539) TCGA-DU-6392-01 2 207175566 207175566 C T ZDBF2 Missense_Mutation p.A2105V 0.36 tolerated(0.32) benign(0) TCGA-DU-6392-01 2 208440061 208440061 C T CREB1 Nonsense_Mutation p.Q205* 0.10 TCGA-DU-6392-01 2 208477941 208477941 G T METTL21A Silent p.L162L 0.08 TCGA-DU-6392-01 2 208811164 208811164 C T PLEKHM3 Missense_Mutation p.S540N 0.40 tolerated(0.3) benign(0.384) TCGA-DU-6392-01 2 208841666 208841666 C T PLEKHM3 Missense_Mutation p.D419N 0.47 tolerated(0.5) probably_damaging(0.995) TCGA-DU-6392-01 2 208866154 208866154 G C PLEKHM3 Silent p.G70G 0.30 TCGA-DU-6392-01 2 210558266 210558266 A C MAP2 Missense_Mutation p.K458Q 0.12 tolerated_low_confidence(0.09) benign(0.177) TCGA-DU-6392-01 2 210559779 210559779 C T MAP2 Missense_Mutation p.T962I 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-6392-01 2 210560108 210560108 C A MAP2 Missense_Mutation p.L1072I 0.33 tolerated_low_confidence(0.55) benign(0.021) TCGA-DU-6392-01 2 210588343 210588343 G A MAP2 Intron 0.12 TCGA-DU-6392-01 2 211159037 211159037 C T MYL1 Missense_Mutation p.R137H 0.40 deleterious(0.02) possibly_damaging(0.908) TCGA-DU-6392-01 2 211302421 211302421 G A LANCL1 Missense_Mutation p.A289V 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 212293204 212293204 G A ERBB4 Missense_Mutation p.P883L 0.53 deleterious(0.03) probably_damaging(0.934) TCGA-DU-6392-01 2 21231046 21231046 C T APOB Silent p.L2898L 0.07 TCGA-DU-6392-01 2 21238060 21238060 G T APOB Missense_Mutation p.P1194H 0.33 probably_damaging(0.998) TCGA-DU-6392-01 2 212543838 212543838 G T ERBB4 Missense_Mutation p.L521M 0.16 deleterious(0.04) possibly_damaging(0.633) TCGA-DU-6392-01 2 21255269 21255269 G A APOB Missense_Mutation p.R437C 0.39 possibly_damaging(0.825) TCGA-DU-6392-01 2 214239746 214239746 G A SPAG16 Missense_Mutation p.R282H 0.32 tolerated(0.27) benign(0.011) TCGA-DU-6392-01 2 215645746 215645746 C A BARD1 Missense_Mutation p.E284D 0.35 tolerated(0.32) benign(0.012) TCGA-DU-6392-01 2 215646227 215646227 T G BARD1 Missense_Mutation p.K124T 0.09 tolerated(0.37) benign(0.016) TCGA-DU-6392-01 2 215819927 215819927 G T ABCA12 Missense_Mutation p.P2131Q 0.29 tolerated(1) benign(0.013) TCGA-DU-6392-01 2 215838767 215838767 C A ABCA12 Splice_Site p.X1823_splice 0.33 TCGA-DU-6392-01 2 215876285 215876285 T G ABCA12 Missense_Mutation p.E737A 0.38 tolerated(0.27) benign(0.001) TCGA-DU-6392-01 2 216285518 216285518 C T FN1 Missense_Mutation p.C518Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 216293036 216293036 C A FN1 Missense_Mutation p.R237S 0.35 deleterious(0.02) benign(0.005) TCGA-DU-6392-01 2 217069920 217069920 A G XRCC5 Missense_Mutation p.I732V 0.39 deleterious(0.02) benign(0.009) TCGA-DU-6392-01 2 217124103 217124103 T C MARCH4 Missense_Mutation p.R389G 0.42 deleterious(0.01) possibly_damaging(0.879) TCGA-DU-6392-01 2 217142452 217142452 C A MARCH4 Missense_Mutation p.D270Y 0.11 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 2 217543716 217543716 T C IGFBP5 Missense_Mutation p.T142A 0.33 tolerated(0.79) benign(0.004) TCGA-DU-6392-01 2 218745683 218745683 T C TNS1 Missense_Mutation p.D331G 0.24 deleterious(0.01) possibly_damaging(0.744) TCGA-DU-6392-01 2 218755688 218755688 C A TNS1 Missense_Mutation p.R163I 0.13 deleterious(0.03) benign(0.365) TCGA-DU-6392-01 2 218925058 218925058 G T CXCR2P1 RNA 0.29 TCGA-DU-6392-01 2 219127520 219127520 G A GPBAR1 Missense_Mutation p.A25T 0.44 deleterious(0.01) benign(0.172) TCGA-DU-6392-01 2 219128211 219128211 C T GPBAR1 Missense_Mutation p.P255L 0.25 tolerated(0.35) benign(0.007) TCGA-DU-6392-01 2 219144799 219144799 C T TMBIM1 Missense_Mutation p.G85R 0.32 tolerated(0.56) benign(0.001) TCGA-DU-6392-01 2 219221579 219221579 C T C2orf62 5'UTR 0.09 TCGA-DU-6392-01 2 219268072 219268072 C T CTDSP1 Nonsense_Mutation p.R197* 0.32 TCGA-DU-6392-01 2 219292775 219292775 G T VIL1 Missense_Mutation p.K145N 0.11 deleterious(0.02) benign(0.027) TCGA-DU-6392-01 2 219301972 219301972 G T VIL1 Missense_Mutation p.K699N 0.28 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 2 219319593 219319593 G T USP37 3'UTR 0.08 TCGA-DU-6392-01 2 219457400 219457400 G A RQCD1 Missense_Mutation p.R234K 0.45 deleterious(0.03) probably_damaging(0.973) TCGA-DU-6392-01 2 219508820 219508820 G T ZNF142 Missense_Mutation p.L807I 0.34 deleterious(0) benign(0.364) TCGA-DU-6392-01 2 219508951 219508951 G T ZNF142 Missense_Mutation p.S763Y 0.37 deleterious(0.04) possibly_damaging(0.608) TCGA-DU-6392-01 2 219509500 219509500 T C ZNF142 Missense_Mutation p.Y580C 0.28 deleterious(0) possibly_damaging(0.759) TCGA-DU-6392-01 2 219521095 219521095 G T ZNF142 Missense_Mutation p.L20M 0.14 deleterious_low_confidence(0.01) benign(0.145) TCGA-DU-6392-01 2 219527966 219527966 G A BCS1L Missense_Mutation p.A373T 0.39 tolerated(0.57) benign(0.001) TCGA-DU-6392-01 2 219528660 219528660 G A RNF25 3'UTR 0.12 TCGA-DU-6392-01 2 219602861 219602861 T C TTLL4 Silent p.P154P 0.09 TCGA-DU-6392-01 2 219679381 219679381 G A CYP27A1 Silent p.R459R 0.34 TCGA-DU-6392-01 2 219679440 219679440 G A CYP27A1 Missense_Mutation p.R479H 0.35 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 2 219692321 219692321 C T PRKAG3 Silent p.L284L 0.38 TCGA-DU-6392-01 2 220045793 220045793 T C FAM134A Missense_Mutation p.I217T 0.08 tolerated(0.1) probably_damaging(0.996) TCGA-DU-6392-01 2 220073159 220073159 G A ZFAND2B Missense_Mutation p.R180Q 0.27 tolerated(0.88) benign(0) TCGA-DU-6392-01 2 220078891 220078891 G A ABCB6 Silent p.A468A 0.35 TCGA-DU-6392-01 2 220089566 220089566 G A ATG9A Missense_Mutation p.P176L 0.40 tolerated(0.32) benign(0.435) TCGA-DU-6392-01 2 220136778 220136778 A T TUBA4B RNA 0.30 TCGA-DU-6392-01 2 220149426 220149426 C T DNAJB2 Missense_Mutation p.S231F 0.39 tolerated(0.42) benign(0.1) TCGA-DU-6392-01 2 220164440 220164440 C T PTPRN Missense_Mutation p.G502D 0.38 tolerated(0.17) benign(0.035) TCGA-DU-6392-01 2 220251081 220251081 T C DNPEP Missense_Mutation p.E129G 0.09 deleterious(0) probably_damaging(0.943) TCGA-DU-6392-01 2 220251124 220251124 G A DNPEP Missense_Mutation p.R115W 0.40 tolerated(0.08) possibly_damaging(0.882) TCGA-DU-6392-01 2 220309641 220309641 G A SPEG Silent p.G191G 0.38 TCGA-DU-6392-01 2 220338574 220338574 G A SPEG Missense_Mutation p.A1466T 0.08 possibly_damaging(0.894) TCGA-DU-6392-01 2 220349114 220349114 C T SPEG Missense_Mutation p.P2310L 0.46 benign(0.146) TCGA-DU-6392-01 2 220366664 220366664 G A GMPPA Missense_Mutation p.V112M 0.35 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 2 220404123 220404123 C T CHPF Silent p.E770E 0.48 TCGA-DU-6392-01 2 220412624 220412624 C T TMEM198 Missense_Mutation p.A188V 0.31 tolerated(1) possibly_damaging(0.787) TCGA-DU-6392-01 2 220422967 220422967 G A OBSL1 Silent p.D1147D 0.43 TCGA-DU-6392-01 2 220480961 220480961 G T STK11IP 3'UTR 0.33 TCGA-DU-6392-01 2 220493264 220493264 C T SLC4A3 Silent p.S63S 0.15 TCGA-DU-6392-01 2 220497697 220497697 G A SLC4A3 Missense_Mutation p.A442T 0.40 tolerated(0.15) possibly_damaging(0.625) TCGA-DU-6392-01 2 220498005 220498005 C T SLC4A3 Silent p.N456N 0.35 TCGA-DU-6392-01 2 220504340 220504340 G A SLC4A3 Missense_Mutation p.V1081I 0.47 tolerated(0.22) benign(0.049) TCGA-DU-6392-01 2 222294740 222294740 G A EPHA4 Silent p.N876N 0.07 TCGA-DU-6392-01 2 222321357 222321357 G T EPHA4 Missense_Mutation p.P527T 0.31 tolerated(0.24) probably_damaging(0.981) TCGA-DU-6392-01 2 222347170 222347170 G A EPHA4 Missense_Mutation p.T407I 0.35 deleterious(0.04) benign(0.053) TCGA-DU-6392-01 2 222365844 222365844 G A EPHA4 Missense_Mutation p.A291V 0.29 tolerated(0.25) benign(0.014) TCGA-DU-6392-01 2 223160331 223160331 T C PAX3 Missense_Mutation p.R123G 0.32 deleterious(0.01) benign(0.174) TCGA-DU-6392-01 2 223423168 223423168 G A SGPP2 Missense_Mutation p.V251M 0.29 deleterious(0.03) possibly_damaging(0.65) TCGA-DU-6392-01 2 223554072 223554073 - T MOGAT1 Frame_Shift_Ins p.S123Ffs*6 0.32 TCGA-DU-6392-01 2 223554130 223554130 T C MOGAT1 Silent p.L140L 0.46 TCGA-DU-6392-01 2 223787865 223787865 C T ACSL3 Missense_Mutation p.P384S 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 223806295 223806295 G T ACSL3 Missense_Mutation p.D696Y 0.11 deleterious(0.02) probably_damaging(0.98) TCGA-DU-6392-01 2 224743434 224743434 G A WDFY1 Missense_Mutation p.T396I 0.35 deleterious(0.04) benign(0.013) TCGA-DU-6392-01 2 224759041 224759041 C T WDFY1 Silent p.S247S 0.21 TCGA-DU-6392-01 2 224763764 224763764 G A WDFY1 Missense_Mutation p.A170V 0.12 tolerated(0.69) benign(0.085) TCGA-DU-6392-01 2 225365132 225365132 G A CUL3 Missense_Mutation p.P520S 0.36 tolerated(0.19) benign(0.05) TCGA-DU-6392-01 2 225727444 225727444 T G DOCK10 Missense_Mutation p.K541T 0.12 deleterious(0) benign(0.341) TCGA-DU-6392-01 2 226516267 226516267 G A NYAP2 Missense_Mutation p.A650T 0.39 deleterious_low_confidence(0.01) benign(0.004) TCGA-DU-6392-01 2 227660889 227660889 C T IRS1 Missense_Mutation p.A856T 0.28 tolerated(0.44) benign(0.002) TCGA-DU-6392-01 2 227662846 227662846 G A IRS1 Silent p.A203A 0.38 TCGA-DU-6392-01 2 227924141 227924141 G A COL4A4 Missense_Mutation p.P788L 0.38 benign(0.125) TCGA-DU-6392-01 2 227954604 227954604 C T COL4A4 Missense_Mutation p.R480K 0.33 benign(0.364) TCGA-DU-6392-01 2 228012194 228012194 C T COL4A4 Nonsense_Mutation p.W2* 0.35 TCGA-DU-6392-01 2 228205057 228205057 C T MFF Missense_Mutation p.A160V 0.33 tolerated(0.09) possibly_damaging(0.679) TCGA-DU-6392-01 2 228228534 228228534 C A TM4SF20 Missense_Mutation p.G199V 0.36 deleterious(0) probably_damaging(0.963) TCGA-DU-6392-01 2 228399560 228399560 G T AGFG1 Splice_Site p.X366_splice 0.15 TCGA-DU-6392-01 2 228882782 228882782 C T SPHKAP Missense_Mutation p.A930T 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 228884074 228884074 G A SPHKAP Missense_Mutation p.A499V 0.38 tolerated(0.06) benign(0.235) TCGA-DU-6392-01 2 230377525 230377525 C T DNER Missense_Mutation p.S374N 0.40 tolerated(0.93) benign(0.002) TCGA-DU-6392-01 2 230656709 230656709 A G TRIP12 Missense_Mutation p.Y1355H 0.45 deleterious(0.05) probably_damaging(0.994) TCGA-DU-6392-01 2 230668856 230668856 A G TRIP12 Missense_Mutation p.L838S 0.06 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 2 230672573 230672573 T C TRIP12 Missense_Mutation p.M735V 0.27 deleterious(0) benign(0.206) TCGA-DU-6392-01 2 230861496 230861496 A G FBXO36 Missense_Mutation p.I79V 0.42 tolerated(0.35) benign(0.004) TCGA-DU-6392-01 2 230875554 230875554 G A FBXO36 Missense_Mutation p.R174H 0.44 tolerated(0.05) possibly_damaging(0.684) TCGA-DU-6392-01 2 231033790 231033790 C A SP110 3'UTR 0.10 TCGA-DU-6392-01 2 231067397 231067397 C T SP110 Missense_Mutation p.D316N 0.30 tolerated(0.05) unknown(0) TCGA-DU-6392-01 2 231282380 231282380 G T SP100 Missense_Mutation p.R36M 0.38 deleterious(0.01) possibly_damaging(0.702) TCGA-DU-6392-01 2 231379976 231379976 C A SP100 Intron 0.28 TCGA-DU-6392-01 2 231683256 231683256 C T CAB39 Missense_Mutation p.T288M 0.28 deleterious(0) possibly_damaging(0.786) TCGA-DU-6392-01 2 231941835 231941835 C T PSMD1 Nonsense_Mutation p.R344* 0.10 TCGA-DU-6392-01 2 232209834 232209834 C T ARMC9 3'UTR 0.34 TCGA-DU-6392-01 2 232325433 232325433 T C NCL Missense_Mutation p.D253G 0.33 benign(0) TCGA-DU-6392-01 2 232378330 232378330 C A LINC00471 RNA 0.09 TCGA-DU-6392-01 2 232390003 232390003 G T NMUR1 Missense_Mutation p.F344L 0.38 tolerated(0.22) benign(0.083) TCGA-DU-6392-01 2 232393400 232393400 A G NMUR1 Missense_Mutation p.L111P 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 232393708 232393708 G T NMUR1 Nonsense_Mutation p.C8* 0.21 TCGA-DU-6392-01 2 232894770 232894770 C A DIS3L2 Missense_Mutation p.L116I 0.16 tolerated(0.09) benign(0.141) TCGA-DU-6392-01 2 233199425 233199425 C T DIS3L2 Nonsense_Mutation p.Q792* 0.32 TCGA-DU-6392-01 2 233274324 233274324 C T ALPPL2 Silent p.D447D 0.21 TCGA-DU-6392-01 2 233349249 233349249 C A ECEL1 Nonsense_Mutation p.E373* 0.06 TCGA-DU-6392-01 2 233399045 233399045 A G CHRND Missense_Mutation p.Y455C 0.36 tolerated(0.07) benign(0.33) TCGA-DU-6392-01 2 233408362 233408362 T A CHRNG Missense_Mutation p.S330T 0.40 tolerated(0.1) probably_damaging(0.999) TCGA-DU-6392-01 2 233681620 233681620 C T GIGYF2 Missense_Mutation p.R771W 0.27 unknown(0) TCGA-DU-6392-01 2 233710533 233710533 G T GIGYF2 Missense_Mutation p.D1154Y 0.36 unknown(0) TCGA-DU-6392-01 2 233785012 233785012 C A NGEF Missense_Mutation p.E270D 0.39 tolerated(0.35) benign(0.003) TCGA-DU-6392-01 2 233986949 233986949 G A INPP5D Missense_Mutation p.D111N 0.43 deleterious(0.02) benign(0.417) TCGA-DU-6392-01 2 234113059 234113059 G A INPP5D Missense_Mutation p.C1076Y 0.26 deleterious_low_confidence(0) benign(0.046) TCGA-DU-6392-01 2 234201038 234201038 C A ATG16L1 Missense_Mutation p.P529H 0.24 deleterious(0.04) benign(0.376) TCGA-DU-6392-01 2 234201945 234201945 C A ATG16L1 Missense_Mutation p.L558M 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 2 234203052 234203052 C T ATG16L1 3'UTR 0.36 TCGA-DU-6392-01 2 234235800 234235800 G A SAG Missense_Mutation p.A157T 0.38 deleterious(0.02) benign(0.019) TCGA-DU-6392-01 2 234368407 234368407 G A DGKD Missense_Mutation p.R900H 0.36 tolerated(0.08) possibly_damaging(0.874) TCGA-DU-6392-01 2 234526719 234526719 G A UGT1A8 Silent p.S122S 0.31 TCGA-DU-6392-01 2 234526813 234526813 G T UGT1A8 Missense_Mutation p.G154C 0.40 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 234601615 234601615 C T UGT1A6 5'UTR 0.34 TCGA-DU-6392-01 2 234652377 234652377 G A UGT1A10 Intron 0.36 TCGA-DU-6392-01 2 234669695 234669695 G A UGT1A8 Intron 0.43 TCGA-DU-6392-01 2 234775381 234775381 G A MSL3P1 RNA 0.43 TCGA-DU-6392-01 2 234862630 234862630 G A TRPM8 Missense_Mutation p.V404M 0.40 tolerated(0.1) probably_damaging(0.999) TCGA-DU-6392-01 2 234878920 234878920 C T TRPM8 Silent p.F735F 0.44 TCGA-DU-6392-01 2 235950399 235950399 C T SH3BP4 Missense_Mutation p.A329V 0.38 tolerated(0.17) benign(0.019) TCGA-DU-6392-01 2 236649637 236649637 A G AGAP1 Missense_Mutation p.D114G 0.11 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 2 237074680 237074680 G A GBX2 Silent p.G308G 0.41 TCGA-DU-6392-01 2 237489831 237489831 G A ACKR3 Silent p.A241A 0.41 TCGA-DU-6392-01 2 237489982 237489982 G A ACKR3 Missense_Mutation p.A292T 0.35 tolerated(0.13) benign(0.18) TCGA-DU-6392-01 2 237490082 237490082 A G ACKR3 Missense_Mutation p.E325G 0.13 deleterious(0.03) benign(0.199) TCGA-DU-6392-01 2 238253054 238253054 G A COL6A3 Missense_Mutation p.A2536V 0.08 unknown(0) TCGA-DU-6392-01 2 238277674 238277674 C T COL6A3 Missense_Mutation p.V1478M 0.34 possibly_damaging(0.837) TCGA-DU-6392-01 2 238289974 238289974 C T COL6A3 Missense_Mutation p.R494K 0.37 benign(0.04) TCGA-DU-6392-01 2 238290034 238290034 C A COL6A3 Missense_Mutation p.R474M 0.08 probably_damaging(0.996) TCGA-DU-6392-01 2 238434343 238434343 G A MLPH Missense_Mutation p.E259K 0.33 tolerated(0.08) benign(0.266) TCGA-DU-6392-01 2 238725905 238725905 C T RBM44 Missense_Mutation p.P116S 0.33 tolerated(0.12) benign(0.018) TCGA-DU-6392-01 2 238990708 238990708 G A SCLY Missense_Mutation p.R220H 0.33 tolerated(0.12) benign(0.019) TCGA-DU-6392-01 2 239049946 239049946 C T KLHL30 Missense_Mutation p.A184V 0.27 tolerated(0.07) possibly_damaging(0.555) TCGA-DU-6392-01 2 239098610 239098610 G T ILKAP Missense_Mutation p.S61Y 0.10 deleterious(0.02) benign(0.423) TCGA-DU-6392-01 2 239141008 239141008 G T AC016757.3 5'Flank 0.09 TCGA-DU-6392-01 2 239161906 239161906 G T PER2 Missense_Mutation p.L920M 0.13 tolerated(0.08) probably_damaging(0.969) TCGA-DU-6392-01 2 239186389 239186389 C A PER2 Missense_Mutation p.K63N 0.12 deleterious(0.04) possibly_damaging(0.575) TCGA-DU-6392-01 2 240029749 240029749 G A HDAC4 Silent p.C698C 0.57 TCGA-DU-6392-01 2 240061441 240061441 C T HDAC4 Missense_Mutation p.S306N 0.34 tolerated(0.08) benign(0.379) TCGA-DU-6392-01 2 240944661 240944661 G A NDUFA10 Nonsense_Mutation p.Q286* 0.10 TCGA-DU-6392-01 2 240951043 240951043 G T NDUFA10 Missense_Mutation p.P247H 0.31 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 2 240961658 240961658 C G NDUFA10 Missense_Mutation p.V59L 0.39 tolerated(0.16) benign(0.02) TCGA-DU-6392-01 2 240968902 240968902 G A OR6B2 3'UTR 0.33 TCGA-DU-6392-01 2 240969099 240969099 C T OR6B2 Missense_Mutation p.V250I 0.45 tolerated(1) benign(0.001) TCGA-DU-6392-01 2 241398589 241398589 G T GPC1 Missense_Mutation p.Q103H 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-DU-6392-01 2 241404524 241404524 G A GPC1 Missense_Mutation p.V389I 0.43 tolerated(0.94) benign(0.002) TCGA-DU-6392-01 2 241516172 241516172 G A RNPEPL1 Silent p.P346P 0.41 TCGA-DU-6392-01 2 241533978 241533978 G T CAPN10 Missense_Mutation p.Q283H 0.30 deleterious(0.01) possibly_damaging(0.811) TCGA-DU-6392-01 2 241536168 241536168 C T CAPN10 Nonsense_Mutation p.Q518* 0.10 TCGA-DU-6392-01 2 241537381 241537381 G A CAPN10 Missense_Mutation p.R607H 0.50 deleterious(0.04) benign(0.035) TCGA-DU-6392-01 2 241570316 241570316 G A GPR35 3'UTR 0.14 TCGA-DU-6392-01 2 241676556 241676556 C T KIF1A Missense_Mutation p.E1311K 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 2 241685311 241685311 C T KIF1A Missense_Mutation p.G1073D 0.59 tolerated(0.43) benign(0.001) TCGA-DU-6392-01 2 241722503 241722503 C T KIF1A Silent p.S274S 0.36 TCGA-DU-6392-01 2 241815387 241815387 G A AGXT Missense_Mutation p.S271N 0.20 deleterious(0) possibly_damaging(0.61) TCGA-DU-6392-01 2 241817440 241817440 C T AGXT Missense_Mutation p.A315V 0.42 tolerated(0.27) benign(0.01) TCGA-DU-6392-01 2 241835229 241835229 G T C2orf54 Silent p.S62S 0.33 TCGA-DU-6392-01 2 242021117 242021117 C T SNED1 Silent p.N1314N 0.50 TCGA-DU-6392-01 2 242046007 242046007 C T PASK Missense_Mutation p.G1323R 0.33 tolerated_low_confidence(0.33) benign(0.001) TCGA-DU-6392-01 2 242054372 242054372 C T PASK Intron 0.46 TCGA-DU-6392-01 2 242062244 242062244 T G PASK Missense_Mutation p.E992A 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 242065692 242065692 G A PASK Missense_Mutation p.R880C 0.11 deleterious(0.05) benign(0.305) TCGA-DU-6392-01 2 242066235 242066235 G A PASK Silent p.L699L 0.37 TCGA-DU-6392-01 2 242075446 242075446 A C PASK Silent p.T382T 0.41 TCGA-DU-6392-01 2 242076463 242076463 C T PASK Missense_Mutation p.A365T 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 242097264 242097264 A T PPP1R7 Missense_Mutation p.D75V 0.40 deleterious(0) possibly_damaging(0.729) TCGA-DU-6392-01 2 242102714 242102714 C T PPP1R7 Silent p.I204I 0.34 TCGA-DU-6392-01 2 242122067 242122067 C T PPP1R7 Silent p.N304N 0.25 TCGA-DU-6392-01 2 242287575 242287575 A G SEPT2 Missense_Mutation p.K318R 0.11 tolerated(0.27) benign(0.014) TCGA-DU-6392-01 2 242402851 242402851 C T FARP2 Silent p.F593F 0.53 TCGA-DU-6392-01 2 242439588 242439588 C A STK25 Missense_Mutation p.A143S 0.13 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 2 24247137 24247137 C T MFSD2B Missense_Mutation p.R496W 0.56 deleterious(0) unknown(0) TCGA-DU-6392-01 2 24253727 24253727 C T C2orf44 3'UTR 0.56 TCGA-DU-6392-01 2 242542409 242542409 C T THAP4 Missense_Mutation p.A496T 0.39 deleterious(0.02) possibly_damaging(0.754) TCGA-DU-6392-01 2 242577109 242577109 G A ATG4B 5'UTR 0.10 TCGA-DU-6392-01 2 24262192 24262192 T A C2orf44 Missense_Mutation p.E58V 0.27 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 2 242662453 242662453 C A ING5 Silent p.V194V 0.13 TCGA-DU-6392-01 2 242756203 242756203 C T NEU4 Silent p.L119L 0.20 TCGA-DU-6392-01 2 242757436 242757436 C T NEU4 Silent p.L186L 0.29 TCGA-DU-6392-01 2 242815105 242815105 G A CXXC11 Silent p.T466T 0.41 TCGA-DU-6392-01 2 24300372 24300372 C A TP53I3 3'UTR 0.42 TCGA-DU-6392-01 2 24406370 24406370 G A FAM228A Missense_Mutation p.R86Q 0.34 tolerated(0.81) benign(0.033) TCGA-DU-6392-01 2 24494740 24494740 G A ITSN2 Nonsense_Mutation p.R718* 0.41 TCGA-DU-6392-01 2 24536384 24536384 C A ITSN2 Missense_Mutation p.A45S 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 25038367 25038367 C A CENPO Silent p.G112G 0.44 TCGA-DU-6392-01 2 25050827 25050827 G T ADCY3 Silent p.L792L 0.35 TCGA-DU-6392-01 2 25057802 25057802 C T ADCY3 Missense_Mutation p.D556N 0.53 tolerated(0.51) benign(0.032) TCGA-DU-6392-01 2 25497902 25497902 G A DNMT3A Missense_Mutation p.R183W 0.56 deleterious(0) possibly_damaging(0.893) TCGA-DU-6392-01 2 25656860 25656860 C T DTNB Missense_Mutation p.R421H 0.23 deleterious(0.04) possibly_damaging(0.696) TCGA-DU-6392-01 2 25967097 25967097 C A ASXL2 Missense_Mutation p.E703D 0.20 tolerated_low_confidence(0.43) benign(0.012) TCGA-DU-6392-01 2 26424180 26424180 G A HADHA Silent p.D410D 0.10 TCGA-DU-6392-01 2 26532842 26532842 G T GPR113 Silent p.S1070S 0.47 TCGA-DU-6392-01 2 26534792 26534792 C T GPR113 Missense_Mutation p.A602T 0.10 tolerated(0.23) benign(0.008) TCGA-DU-6392-01 2 26672923 26672923 C T DRC1 Silent p.C523C 0.33 TCGA-DU-6392-01 2 26688593 26688593 G A OTOF Silent p.N1582N 0.32 TCGA-DU-6392-01 2 26739295 26739295 C A OTOF Missense_Mutation p.S167I 0.41 tolerated(0.1) benign(0.178) TCGA-DU-6392-01 2 27001097 27001097 C T SLC35F6 Silent p.F278F 0.40 TCGA-DU-6392-01 2 27275942 27275942 C T AGBL5 Missense_Mutation p.A39V 0.46 tolerated(0.21) benign(0.001) TCGA-DU-6392-01 2 27277665 27277665 C T AGBL5 Missense_Mutation p.A240V 0.11 tolerated(0.55) benign(0.003) TCGA-DU-6392-01 2 27293046 27293046 A C AGBL5 Missense_Mutation p.N859T 0.43 tolerated_low_confidence(1) benign(0) TCGA-DU-6392-01 2 27306234 27306234 G A EMILIN1 Missense_Mutation p.V599M 0.26 possibly_damaging(0.855) TCGA-DU-6392-01 2 27355486 27355486 C T PREB Missense_Mutation p.R246H 0.29 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 27454415 27454415 C T CAD Silent p.G789G 0.09 TCGA-DU-6392-01 2 27456617 27456617 G A CAD Missense_Mutation p.A1114T 0.35 deleterious(0) probably_damaging(0.944) TCGA-DU-6392-01 2 27545327 27545327 C T MPV17 Missense_Mutation p.V20I 0.37 tolerated(0.62) benign(0.001) TCGA-DU-6392-01 2 27597589 27597589 G T SNX17 Missense_Mutation p.M215I 0.08 tolerated(0.07) benign(0.119) TCGA-DU-6392-01 2 27599026 27599026 G T SNX17 Missense_Mutation p.K386N 0.08 deleterious(0) probably_damaging(0.943) TCGA-DU-6392-01 2 27663750 27663750 C T NRBP1 Silent p.V424V 0.40 TCGA-DU-6392-01 2 27666108 27666108 G A KRTCAP3 Silent p.P147P 0.45 TCGA-DU-6392-01 2 27676877 27676877 C A IFT172 Missense_Mutation p.R1228I 0.28 deleterious(0) possibly_damaging(0.882) TCGA-DU-6392-01 2 27799629 27799629 G A C2orf16 Missense_Mutation p.E64K 0.46 tolerated(0.13) benign(0.331) TCGA-DU-6392-01 2 27799956 27799956 G A C2orf16 Missense_Mutation p.D173N 0.33 tolerated(0.19) possibly_damaging(0.717) TCGA-DU-6392-01 2 27801251 27801251 G T C2orf16 Missense_Mutation p.E604D 0.40 deleterious(0.04) benign(0.01) TCGA-DU-6392-01 2 27801488 27801488 G T C2orf16 Missense_Mutation p.Q683H 0.28 deleterious(0.02) possibly_damaging(0.512) TCGA-DU-6392-01 2 27802252 27802252 C A C2orf16 Missense_Mutation p.P938H 0.11 deleterious(0.01) possibly_damaging(0.78) TCGA-DU-6392-01 2 27844111 27844111 A G ZNF512 Missense_Mutation p.Q496R 0.21 deleterious(0.04) probably_damaging(0.953) TCGA-DU-6392-01 2 27849653 27849653 C T CCDC121 3'Flank 0.67 TCGA-DU-6392-01 2 27861839 27861839 G A GPN1 Missense_Mutation p.V234I 0.47 tolerated(0.26) benign(0.047) TCGA-DU-6392-01 2 27861864 27861864 G A GPN1 Missense_Mutation p.S242N 0.34 deleterious(0) possibly_damaging(0.596) TCGA-DU-6392-01 2 27885025 27885025 C A SUPT7L Intron 0.32 TCGA-DU-6392-01 2 27887225 27887225 G A SLC4A1AP Silent p.E202E 0.36 TCGA-DU-6392-01 2 27887975 27887975 G T SLC4A1AP Missense_Mutation p.E278D 0.28 deleterious(0.05) benign(0.119) TCGA-DU-6392-01 2 279969 279969 C T FAM150B 3'UTR 0.64 TCGA-DU-6392-01 2 28050435 28050435 G A RBKS Missense_Mutation p.T265M 0.38 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 2 28762004 28762004 G T PLB1 Missense_Mutation p.E219D 0.08 tolerated(0.1) benign(0.334) TCGA-DU-6392-01 2 28785917 28785917 T C PLB1 Missense_Mutation p.L386P 0.12 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 2 28847958 28847958 C T PLB1 Nonsense_Mutation p.R1188* 0.42 TCGA-DU-6392-01 2 29084149 29084149 A G TRMT61B Silent p.S276S 0.39 TCGA-DU-6392-01 2 29287763 29287763 G A C2orf71 Missense_Mutation p.A1280V 0.34 tolerated(0.07) benign(0.381) TCGA-DU-6392-01 2 29293713 29293713 T C C2orf71 Missense_Mutation p.T1139A 0.40 tolerated(0.36) benign(0.003) TCGA-DU-6392-01 2 29294474 29294474 G T C2orf71 Missense_Mutation p.S885Y 0.11 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 2 29296260 29296260 C T C2orf71 Missense_Mutation p.G290S 0.33 tolerated(0.7) benign(0.012) TCGA-DU-6392-01 2 29386732 29386732 G T CLIP4 Missense_Mutation p.G524C 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 29519866 29519866 C T ALK Missense_Mutation p.V569M 0.22 deleterious(0.02) benign(0.33) TCGA-DU-6392-01 2 29754876 29754876 C T ALK Silent p.R353R 0.25 TCGA-DU-6392-01 2 30379582 30379582 C T YPEL5 Missense_Mutation p.T22M 0.46 tolerated(0.07) benign(0.18) TCGA-DU-6392-01 2 30959398 30959398 G A CAPN13 Nonsense_Mutation p.R565* 0.38 TCGA-DU-6392-01 2 30980986 30980986 G A CAPN13 Silent p.G264G 0.29 TCGA-DU-6392-01 2 30993237 30993237 G A CAPN13 Missense_Mutation p.R156C 0.43 deleterious(0.03) benign(0.052) TCGA-DU-6392-01 2 31010224 31010224 C A CAPN13 Splice_Site 0.43 TCGA-DU-6392-01 2 31133788 31133788 G A GALNT14 Silent p.H551H 0.32 TCGA-DU-6392-01 2 31135138 31135138 G T GALNT14 Missense_Mutation p.P489H 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 31178596 31178596 C T GALNT14 Missense_Mutation p.R186Q 0.36 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 2 31467293 31467293 C A EHD3 Silent p.A127A 0.10 TCGA-DU-6392-01 2 31489453 31489453 C T EHD3 Silent p.D497D 0.36 TCGA-DU-6392-01 2 31565075 31565075 T G XDH Missense_Mutation p.I1165L 0.11 tolerated(0.09) probably_damaging(0.946) TCGA-DU-6392-01 2 31591469 31591469 G C XDH Missense_Mutation p.Q680E 0.37 deleterious(0.01) benign(0.062) TCGA-DU-6392-01 2 31591522 31591522 G A XDH Missense_Mutation p.T662I 0.37 tolerated(0.64) possibly_damaging(0.907) TCGA-DU-6392-01 2 31602786 31602786 G T XDH Missense_Mutation p.L397M 0.36 tolerated(0.11) possibly_damaging(0.824) TCGA-DU-6392-01 2 31637509 31637509 G T XDH Missense_Mutation p.F8L 0.23 deleterious(0.03) possibly_damaging(0.539) TCGA-DU-6392-01 2 32449721 32449721 G A NLRC4 Nonsense_Mutation p.Q966* 0.15 TCGA-DU-6392-01 2 32474692 32474692 C T NLRC4 Silent p.Q747Q 0.36 TCGA-DU-6392-01 2 32475470 32475470 C T NLRC4 Missense_Mutation p.S488N 0.33 tolerated(0.31) benign(0.276) TCGA-DU-6392-01 2 32526473 32526473 G A YIPF4 Missense_Mutation p.G169E 0.41 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 2 32530576 32530576 G A YIPF4 Missense_Mutation p.A206T 0.36 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 2 32613827 32613827 G T BIRC6 Missense_Mutation p.V219F 0.20 benign(0.186) TCGA-DU-6392-01 2 32688447 32688447 C T BIRC6 Nonsense_Mutation p.Q1647* 0.36 TCGA-DU-6392-01 2 32702460 32702460 C T BIRC6 Missense_Mutation p.R2293C 0.25 probably_damaging(0.993) TCGA-DU-6392-01 2 32735686 32735686 C A BIRC6 Missense_Mutation p.P3444H 0.07 possibly_damaging(0.547) TCGA-DU-6392-01 2 32740275 32740275 C T BIRC6 Missense_Mutation p.S3596F 0.32 probably_damaging(0.996) TCGA-DU-6392-01 2 33012102 33012102 C T TTC27 Silent p.H628H 0.08 TCGA-DU-6392-01 2 33468843 33468843 G T LTBP1 Missense_Mutation p.S664I 0.08 tolerated(0.05) possibly_damaging(0.515) TCGA-DU-6392-01 2 33518329 33518329 C T LTBP1 Missense_Mutation p.P1072L 0.44 deleterious(0.04) benign(0.052) TCGA-DU-6392-01 2 33568012 33568012 G A LTBP1 Missense_Mutation p.D1280N 0.30 tolerated(0.09) probably_damaging(0.963) TCGA-DU-6392-01 2 33590519 33590519 T C LTBP1 Missense_Mutation p.Y1554H 0.11 tolerated(0.11) possibly_damaging(0.732) TCGA-DU-6392-01 2 33622300 33622300 C T LTBP1 Silent p.C1645C 0.40 TCGA-DU-6392-01 2 33623537 33623537 G A LTBP1 Silent p.V1697V 0.37 TCGA-DU-6392-01 2 33747045 33747045 G T RASGRP3 Missense_Mutation p.R131I 0.09 deleterious(0.03) possibly_damaging(0.642) TCGA-DU-6392-01 2 33810031 33810031 G A FAM98A Missense_Mutation p.R457C 0.34 tolerated_low_confidence(0.1) unknown(0) TCGA-DU-6392-01 2 33813498 33813498 G A FAM98A Silent p.V142V 0.45 TCGA-DU-6392-01 2 3428406 3428406 C A TRAPPC12 Nonsense_Mutation p.Y463* 0.08 TCGA-DU-6392-01 2 3469442 3469442 C T TRAPPC12 Silent p.S584S 0.12 TCGA-DU-6392-01 2 3504690 3504690 G A ADI1 Silent p.F105F 0.36 TCGA-DU-6392-01 2 36749446 36749446 C A CRIM1 Silent p.P806P 0.10 TCGA-DU-6392-01 2 36986260 36986260 C T VIT Intron 0.29 TCGA-DU-6392-01 2 37035650 37035650 C T VIT Silent p.H475H 0.23 TCGA-DU-6392-01 2 37041325 37041325 G T VIT Splice_Site p.X635_splice 0.54 TCGA-DU-6392-01 2 37297432 37297432 C A HEATR5B Nonsense_Mutation p.G290* 0.08 TCGA-DU-6392-01 2 37297471 37297471 C A HEATR5B Nonsense_Mutation p.G277* 0.11 TCGA-DU-6392-01 2 37302635 37302635 A G HEATR5B Missense_Mutation p.V197A 0.09 tolerated(1) benign(0.001) TCGA-DU-6392-01 2 37319369 37319369 C T GPATCH11 Nonsense_Mutation p.R167* 0.33 TCGA-DU-6392-01 2 37414560 37414560 T A SULT6B1 Nonsense_Mutation p.K46* 0.10 TCGA-DU-6392-01 2 3743461 3743461 A G ALLC Missense_Mutation p.I222M 0.15 deleterious(0.05) probably_damaging(0.909) TCGA-DU-6392-01 2 37450453 37450453 G A CEBPZ Missense_Mutation p.R581C 0.34 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 2 37454686 37454686 C T CEBPZ Splice_Site p.X550_splice 0.33 TCGA-DU-6392-01 2 3750056 3750056 G A ALLC Missense_Mutation p.R360H 0.48 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 2 37586802 37586802 G T QPCT Missense_Mutation p.G116V 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 37594504 37594504 A G QPCT Missense_Mutation p.T226A 0.19 tolerated(0.14) benign(0.077) TCGA-DU-6392-01 2 38178566 38178566 C A RMDN2 Missense_Mutation p.P70T 0.33 tolerated_low_confidence(0.71) benign(0.01) TCGA-DU-6392-01 2 38795439 38795439 G A HNRNPLL Missense_Mutation p.P487L 0.38 tolerated(0.08) benign(0.296) TCGA-DU-6392-01 2 38796365 38796365 G A HNRNPLL Silent p.G437G 0.42 TCGA-DU-6392-01 2 38960630 38960630 C T GALM Missense_Mutation p.P318S 0.28 tolerated(0.07) benign(0.046) TCGA-DU-6392-01 2 38972324 38972324 G A SRSF7 Missense_Mutation p.S223F 0.38 deleterious_low_confidence(0.02) benign(0.184) TCGA-DU-6392-01 2 39053084 39053084 G A DHX57 Silent p.C973C 0.36 TCGA-DU-6392-01 2 39224152 39224152 C A SOS1 Nonsense_Mutation p.G998* 0.31 TCGA-DU-6392-01 2 39406359 39406359 C T CDKL4 Missense_Mutation p.R299H 0.31 tolerated(0.09) benign(0.001) TCGA-DU-6392-01 2 39440541 39440541 G A CDKL4 Silent p.N121N 0.45 TCGA-DU-6392-01 2 39440589 39440589 G A CDKL4 Silent p.S105S 0.38 TCGA-DU-6392-01 2 39477781 39477781 G A MAP4K3 Missense_Mutation p.A888V 0.40 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 2 39499678 39499678 G A MAP4K3 Silent p.F600F 0.09 TCGA-DU-6392-01 2 40342396 40342396 G A SLC8A1 Silent p.F973F 0.40 TCGA-DU-6392-01 2 42936207 42936207 C A MTA3 Missense_Mutation p.A499D 0.36 deleterious(0.01) benign(0.12) TCGA-DU-6392-01 2 43458140 43458140 A C THADA Missense_Mutation p.S1937A 0.11 tolerated_low_confidence(0.31) benign(0.033) TCGA-DU-6392-01 2 43800057 43800057 G A THADA Nonsense_Mutation p.R602* 0.41 TCGA-DU-6392-01 2 43927114 43927114 G A PLEKHH2 Silent p.E339E 0.40 TCGA-DU-6392-01 2 43980863 43980863 A C PLEKHH2 Missense_Mutation p.K1253N 0.15 deleterious(0) benign(0.05) TCGA-DU-6392-01 2 44051083 44051083 C T ABCG5 Silent p.P431P 0.42 TCGA-DU-6392-01 2 44051213 44051213 G A ABCG5 Missense_Mutation p.T388M 0.28 tolerated(1) benign(0) TCGA-DU-6392-01 2 44053537 44053537 C T ABCG5 Missense_Mutation p.R253H 0.39 deleterious(0.01) benign(0.341) TCGA-DU-6392-01 2 44071654 44071654 G T ABCG8 Missense_Mutation p.Q24H 0.43 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-DU-6392-01 2 44078951 44078951 G A ABCG8 Missense_Mutation p.R184H 0.28 deleterious(0.03) benign(0.444) TCGA-DU-6392-01 2 44104939 44104939 T C ABCG8 Missense_Mutation p.S637P 0.40 deleterious(0.03) possibly_damaging(0.544) TCGA-DU-6392-01 2 44173377 44173377 C T LRPPRC Missense_Mutation p.M695I 0.10 deleterious(0.01) possibly_damaging(0.49) TCGA-DU-6392-01 2 44209388 44209388 G A LRPPRC Missense_Mutation p.T112I 0.44 tolerated(1) benign(0.004) TCGA-DU-6392-01 2 44471370 44471370 G A snoU13 5'Flank 0.38 TCGA-DU-6392-01 2 44528205 44528205 G A SLC3A1 Missense_Mutation p.D359N 0.53 deleterious(0.01) possibly_damaging(0.899) TCGA-DU-6392-01 2 45800362 45800362 T G SRBD1 Missense_Mutation p.N430T 0.43 tolerated(0.52) benign(0.002) TCGA-DU-6392-01 2 46386777 46386777 C T PRKCE Silent p.G651G 0.30 TCGA-DU-6392-01 2 46603893 46603893 G A EPAS1 Splice_Site p.X417_splice 0.38 TCGA-DU-6392-01 2 46739186 46739186 C A ATP6V1E2 Missense_Mutation p.R222I 0.36 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 2 46739757 46739757 C T ATP6V1E2 Missense_Mutation p.A32T 0.40 deleterious(0.05) benign(0.084) TCGA-DU-6392-01 2 46850956 46850956 C T CRIPT Missense_Mutation p.S64F 0.35 tolerated(0.06) benign(0.396) TCGA-DU-6392-01 2 46851469 46851469 A G CRIPT 3'UTR 0.18 TCGA-DU-6392-01 2 47184094 47184094 G A TTC7A Silent p.E155E 0.44 TCGA-DU-6392-01 2 47643491 47643492 - A MSH2 Frame_Shift_Ins p.T335Nfs*9 0.11 TCGA-DU-6392-01 2 48010413 48010413 C A MSH6 Missense_Mutation p.S14Y 0.21 deleterious(0) possibly_damaging(0.48) TCGA-DU-6392-01 2 48026290 48026290 G A MSH6 Missense_Mutation p.D390N 0.11 tolerated(0.07) possibly_damaging(0.521) TCGA-DU-6392-01 2 48030721 48030721 A G MSH6 Missense_Mutation p.D1112G 0.10 deleterious(0) possibly_damaging(0.559) TCGA-DU-6392-01 2 48030802 48030802 G A MSH6 Missense_Mutation p.G1139D 0.42 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 2 48573609 48573609 T C FOXN2 Missense_Mutation p.Y86H 0.39 tolerated(0.54) benign(0.015) TCGA-DU-6392-01 2 48602108 48602108 C T FOXN2 Silent p.Y274Y 0.36 TCGA-DU-6392-01 2 48602548 48602548 C A FOXN2 Missense_Mutation p.A421E 0.38 deleterious(0.01) benign(0.384) TCGA-DU-6392-01 2 48701869 48701869 C T PPP1R21 Missense_Mutation p.A379V 0.35 deleterious(0.01) probably_damaging(0.923) TCGA-DU-6392-01 2 48808411 48808411 G A STON1-GTF2A1L Silent p.E213E 0.37 TCGA-DU-6392-01 2 48809188 48809188 G T STON1-GTF2A1L Missense_Mutation p.E472D 0.39 tolerated(0.17) probably_damaging(0.997) TCGA-DU-6392-01 2 48936113 48936113 G A LHCGR Silent p.F218F 0.37 TCGA-DU-6392-01 2 49190103 49190103 G T FSHR Silent p.S619S 0.47 TCGA-DU-6392-01 2 49190357 49190357 G T FSHR Missense_Mutation p.L535I 0.45 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 2 49195866 49195866 G A FSHR Silent p.C275C 0.39 TCGA-DU-6392-01 2 50149183 50149183 A G NRXN1 Missense_Mutation p.S1515P 0.31 tolerated_low_confidence(0.14) probably_damaging(1) TCGA-DU-6392-01 2 50850457 50850457 G A NRXN1 Missense_Mutation p.R410C 0.34 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 2 51254898 51254898 C T NRXN1 Missense_Mutation p.A172T 0.50 deleterious(0.04) benign(0.001) TCGA-DU-6392-01 2 51254960 51254960 C A NRXN1 Missense_Mutation p.S151I 0.20 deleterious(0) benign(0.212) TCGA-DU-6392-01 2 54021567 54021567 T C ERLEC1 Missense_Mutation p.L83P 0.57 tolerated(0.27) benign(0.005) TCGA-DU-6392-01 2 54081849 54081849 C T GPR75 Silent p.S15S 0.30 TCGA-DU-6392-01 2 54163276 54163276 C T PSME4 Missense_Mutation p.R261Q 0.34 deleterious(0.01) probably_damaging(0.982) TCGA-DU-6392-01 2 54845255 54845255 G A SPTBN1 Missense_Mutation p.A230T 0.22 deleterious(0.01) probably_damaging(0.966) TCGA-DU-6392-01 2 54849603 54849603 G A SPTBN1 Missense_Mutation p.R348H 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 54858298 54858298 C T SPTBN1 Silent p.A1038A 0.31 TCGA-DU-6392-01 2 54874343 54874343 G A SPTBN1 Missense_Mutation p.V1648M 0.13 deleterious(0.01) benign(0.269) TCGA-DU-6392-01 2 54876139 54876139 C T SPTBN1 Missense_Mutation p.R1672W 0.48 deleterious(0.04) probably_damaging(0.994) TCGA-DU-6392-01 2 54885015 54885015 C T SPTBN1 Silent p.D2025D 0.29 TCGA-DU-6392-01 2 54886386 54886386 C T SPTBN1 Silent p.A2113A 0.41 TCGA-DU-6392-01 2 55408813 55408813 A G CLHC1 Silent p.S358S 0.37 TCGA-DU-6392-01 2 55449462 55449462 C A CLHC1 Missense_Mutation p.R29I 0.26 tolerated(0.05) probably_damaging(0.959) TCGA-DU-6392-01 2 55523586 55523586 C A CCDC88A Missense_Mutation p.E1632D 0.10 tolerated(0.35) benign(0.017) TCGA-DU-6392-01 2 55544839 55544839 A G CCDC88A Missense_Mutation p.S1154P 0.10 tolerated(0.06) benign(0.158) TCGA-DU-6392-01 2 55566748 55566748 A G CCDC88A Missense_Mutation p.L457S 0.45 tolerated(0.39) benign(0.133) TCGA-DU-6392-01 2 55571571 55571571 G A CCDC88A Missense_Mutation p.S374F 0.31 tolerated(0.2) probably_damaging(0.988) TCGA-DU-6392-01 2 56144875 56144875 G A EFEMP1 Missense_Mutation p.R148C 0.41 tolerated(0.17) possibly_damaging(0.818) TCGA-DU-6392-01 2 56419887 56419887 C T CCDC85A Silent p.R184R 0.17 TCGA-DU-6392-01 2 56420564 56420564 G T CCDC85A Missense_Mutation p.S410I 0.33 deleterious(0) possibly_damaging(0.548) TCGA-DU-6392-01 2 56602991 56602991 G A CCDC85A Missense_Mutation p.S498N 0.37 tolerated_low_confidence(0.18) benign(0.196) TCGA-DU-6392-01 2 56611422 56611422 G T CCDC85A Missense_Mutation p.D532Y 0.09 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DU-6392-01 2 58386604 58386604 G T VRK2 Missense_Mutation p.D435Y 0.12 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-DU-6392-01 2 60688784 60688784 C A BCL11A Missense_Mutation p.K421N 0.36 deleterious(0) benign(0.403) TCGA-DU-6392-01 2 60689104 60689104 A C BCL11A Missense_Mutation p.F315V 0.10 deleterious(0) probably_damaging(0.972) TCGA-DU-6392-01 2 60995624 60995624 T A PAPOLG Missense_Mutation p.V89E 0.07 deleterious(0.01) benign(0.145) TCGA-DU-6392-01 2 61198657 61198657 C T PUS10 Splice_Site p.X168_splice 0.31 TCGA-DU-6392-01 2 61258831 61258831 G T PEX13 Nonsense_Mutation p.E124* 0.07 TCGA-DU-6392-01 2 61258835 61258835 G A PEX13 Missense_Mutation p.S125N 0.35 deleterious(0.05) probably_damaging(0.966) TCGA-DU-6392-01 2 61310368 61310368 C T KIAA1841 Missense_Mutation p.A270V 0.40 tolerated(0.23) benign(0.006) TCGA-DU-6392-01 2 61433181 61433181 C A USP34 Missense_Mutation p.S3042I 0.41 deleterious(0.02) benign(0.147) TCGA-DU-6392-01 2 61441712 61441712 A G USP34 Missense_Mutation p.V2722A 0.44 tolerated(0.62) benign(0.002) TCGA-DU-6392-01 2 61508367 61508367 C T USP34 Missense_Mutation p.R1670H 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 2 61633019 61633020 - T USP34 Frame_Shift_Ins p.S126Ifs*8 0.38 TCGA-DU-6392-01 2 62067501 62067501 C T FAM161A Missense_Mutation p.R213H 0.07 tolerated(0.2) benign(0.004) TCGA-DU-6392-01 2 62100196 62100196 G T CCT4 Missense_Mutation p.L356M 0.06 deleterious(0.02) probably_damaging(0.963) TCGA-DU-6392-01 2 62450246 62450246 T C B3GNT2 Silent p.S297S 0.12 TCGA-DU-6392-01 2 63283490 63283490 C T OTX1 3'UTR 0.50 TCGA-DU-6392-01 2 64114548 64114548 G T UGP2 Missense_Mutation p.G362C 0.09 deleterious(0) possibly_damaging(0.709) TCGA-DU-6392-01 2 64148459 64148459 C A VPS54 Missense_Mutation p.D584Y 0.12 deleterious(0) possibly_damaging(0.847) TCGA-DU-6392-01 2 64779246 64779246 G T AFTPH Missense_Mutation p.S213I 0.08 tolerated(0.07) benign(0.027) TCGA-DU-6392-01 2 64779664 64779664 T C AFTPH Silent p.C352C 0.37 TCGA-DU-6392-01 2 64863790 64863790 G T SERTAD2 Silent p.I72I 0.09 TCGA-DU-6392-01 2 65228624 65228624 G A SLC1A4 Silent p.T190T 0.34 TCGA-DU-6392-01 2 65309818 65309818 G T CEP68 Missense_Mutation p.E751D 0.31 tolerated_low_confidence(0.05) benign(0.356) TCGA-DU-6392-01 2 65473760 65473760 C A ACTR2 Missense_Mutation p.L93M 0.07 deleterious(0.02) benign(0.132) TCGA-DU-6392-01 2 65540818 65540818 C A SPRED2 Missense_Mutation p.E358D 0.27 tolerated(0.09) probably_damaging(0.999) TCGA-DU-6392-01 2 65540885 65540885 C T SPRED2 Missense_Mutation p.C336Y 0.32 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 2 66664997 66664997 G A MEIS1 Silent p.S47S 0.53 TCGA-DU-6392-01 2 67630708 67630708 C T ETAA1 Silent p.S298S 0.34 TCGA-DU-6392-01 2 67632257 67632257 A G ETAA1 Missense_Mutation p.T815A 0.56 tolerated(0.24) benign(0.027) TCGA-DU-6392-01 2 68609737 68609737 C T PLEK Silent p.D148D 0.31 TCGA-DU-6392-01 2 68691281 68691281 C T FBXO48 3'UTR 0.41 TCGA-DU-6392-01 2 68882376 68882376 C A PROKR1 Missense_Mutation p.L284M 0.26 tolerated(0.24) benign(0.068) TCGA-DU-6392-01 2 69046261 69046261 C A ARHGAP25 Missense_Mutation p.P337H 0.08 deleterious(0.03) benign(0.283) TCGA-DU-6392-01 2 69093135 69093135 C T BMP10 Silent p.Q301Q 0.47 TCGA-DU-6392-01 2 69093325 69093325 C T BMP10 Missense_Mutation p.R238Q 0.31 tolerated(0.57) benign(0.001) TCGA-DU-6392-01 2 69177295 69177295 C T GKN2 Missense_Mutation p.G56E 0.46 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 2 69208018 69208018 C A GKN1 3'UTR 0.25 TCGA-DU-6392-01 2 69597161 69597161 T G GFPT1 Missense_Mutation p.K65N 0.09 tolerated(0.19) benign(0.327) TCGA-DU-6392-01 2 70031690 70031690 C T ANXA4 Silent p.S41S 0.33 TCGA-DU-6392-01 2 70098941 70098941 A C GMCL1 Missense_Mutation p.I477L 0.29 tolerated(0.2) benign(0.003) TCGA-DU-6392-01 2 7018121 7018121 G T RSAD2 Nonsense_Mutation p.E64* 0.26 TCGA-DU-6392-01 2 70377459 70377459 G A C2orf42 3'UTR 0.41 TCGA-DU-6392-01 2 70439789 70439789 C G TIA1 3'UTR 0.07 TCGA-DU-6392-01 2 70454956 70454956 T G TIA1 Splice_Site p.X104_splice 0.36 TCGA-DU-6392-01 2 70890525 70890525 G T ADD2 3'UTR 0.51 TCGA-DU-6392-01 2 70890837 70890837 G A ADD2 Missense_Mutation p.A634V 0.42 tolerated(0.2) benign(0) TCGA-DU-6392-01 2 70919548 70919548 G A ADD2 Missense_Mutation p.P231L 0.19 tolerated(0.05) possibly_damaging(0.887) TCGA-DU-6392-01 2 70931553 70931553 C A ADD2 Missense_Mutation p.Q74H 0.35 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 2 71170823 71170823 G A ATP6V1B1 Missense_Mutation p.V52M 0.32 tolerated(0.28) possibly_damaging(0.5) TCGA-DU-6392-01 2 7170284 7170284 A G RNF144A Missense_Mutation p.K229E 0.39 deleterious(0) probably_damaging(0.93) TCGA-DU-6392-01 2 71776489 71776489 C T DYSF Intron 0.42 TCGA-DU-6392-01 2 71795164 71795164 G T DYSF Missense_Mutation p.K883N 0.08 deleterious(0.01) probably_damaging(0.948) TCGA-DU-6392-01 2 71801428 71801428 G A DYSF Missense_Mutation p.R1110H 0.35 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 2 71838445 71838445 T A DYSF Missense_Mutation p.I1343N 0.20 deleterious(0.01) possibly_damaging(0.49) TCGA-DU-6392-01 2 71906211 71906211 G A DYSF Missense_Mutation p.R1970H 0.33 tolerated(0.8) benign(0.002) TCGA-DU-6392-01 2 71908241 71908241 G A DYSF Splice_Site p.X2058_splice 0.43 TCGA-DU-6392-01 2 72359652 72359652 C T CYP26B1 Missense_Mutation p.D415N 0.37 deleterious(0) probably_damaging(0.939) TCGA-DU-6392-01 2 72360211 72360211 G A CYP26B1 Missense_Mutation p.R363C 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-DU-6392-01 2 72360435 72360435 T C CYP26B1 Missense_Mutation p.D288G 0.43 deleterious(0) possibly_damaging(0.665) TCGA-DU-6392-01 2 73172191 73172191 G A SFXN5 Missense_Mutation p.A328V 0.52 tolerated(0.21) benign(0.345) TCGA-DU-6392-01 2 73215392 73215392 G T SFXN5 Missense_Mutation p.A207D 0.09 deleterious(0) probably_damaging(0.958) TCGA-DU-6392-01 2 73249650 73249650 C A SFXN5 Splice_Site p.X111_splice 0.35 TCGA-DU-6392-01 2 73316022 73316022 G A RAB11FIP5 Silent p.L285L 0.25 TCGA-DU-6392-01 2 73316066 73316066 G T RAB11FIP5 Missense_Mutation p.P270H 0.41 deleterious(0) possibly_damaging(0.779) TCGA-DU-6392-01 2 73446052 73446052 C T SMYD5 Silent p.L54L 0.34 TCGA-DU-6392-01 2 73455931 73455931 G A PRADC1 Silent p.G146G 0.36 TCGA-DU-6392-01 2 73457259 73457259 C A PRADC1 Missense_Mutation p.K50N 0.38 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 2 73470241 73470241 G A CCT7 Missense_Mutation p.R126H 0.42 deleterious(0.04) benign(0.151) TCGA-DU-6392-01 2 73675915 73675915 C A ALMS1 Missense_Mutation p.T753N 0.10 possibly_damaging(0.876) TCGA-DU-6392-01 2 73677079 73677079 C T ALMS1 Missense_Mutation p.T1141I 0.39 benign(0.429) TCGA-DU-6392-01 2 73677140 73677140 T A ALMS1 Silent p.T1161T 0.09 TCGA-DU-6392-01 2 73717414 73717414 G A ALMS1 Missense_Mutation p.M2775I 0.22 benign(0.007) TCGA-DU-6392-01 2 73717916 73717916 G T ALMS1 Nonsense_Mutation p.E2943* 0.06 TCGA-DU-6392-01 2 73717968 73717968 C T ALMS1 Missense_Mutation p.P2960L 0.33 benign(0.073) TCGA-DU-6392-01 2 73829483 73829483 C T ALMS1 Silent p.L4095L 0.12 TCGA-DU-6392-01 2 73868770 73868770 G A NAT8 5'UTR 0.37 TCGA-DU-6392-01 2 73957782 73957783 - T TPRKB Frame_Shift_Ins p.Q116Tfs*23 0.22 TCGA-DU-6392-01 2 74041293 74041293 T A C2orf78 Missense_Mutation p.S263T 0.13 deleterious(0.01) possibly_damaging(0.886) TCGA-DU-6392-01 2 74042505 74042505 T A C2orf78 Silent p.P385P 0.31 TCGA-DU-6392-01 2 74274574 74274574 G T TET3 Missense_Mutation p.E375D 0.52 tolerated(0.37) possibly_damaging(0.633) TCGA-DU-6392-01 2 74274917 74274917 C T TET3 Nonsense_Mutation p.R490* 0.47 TCGA-DU-6392-01 2 74275219 74275219 C T TET3 Silent p.P590P 0.42 TCGA-DU-6392-01 2 74432916 74432916 C A MTHFD2 Silent p.A62A 0.30 TCGA-DU-6392-01 2 74452104 74452104 C T SLC4A5 Missense_Mutation p.V1053I 0.34 tolerated(0.48) benign(0.268) TCGA-DU-6392-01 2 74466478 74466478 C T SLC4A5 Missense_Mutation p.R768H 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-DU-6392-01 2 74683276 74683276 A C INO80B Silent p.G139G 0.38 TCGA-DU-6392-01 2 74688581 74688581 G A MOGS Missense_Mutation p.R779W 0.34 deleterious(0.01) possibly_damaging(0.773) TCGA-DU-6392-01 2 74689080 74689080 C T MOGS Silent p.T612T 0.36 TCGA-DU-6392-01 2 74689222 74689222 C T MOGS Missense_Mutation p.R565Q 0.41 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 2 74689915 74689915 A G MOGS Missense_Mutation p.F334S 0.08 deleterious(0) benign(0.233) TCGA-DU-6392-01 2 74690243 74690243 C T MOGS Intron 0.09 TCGA-DU-6392-01 2 74709259 74709259 G T CCDC142 Missense_Mutation p.L236I 0.12 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 2 74787407 74787407 G A M1AP Silent p.D431D 0.36 TCGA-DU-6392-01 2 74842262 74842262 G T M1AP Missense_Mutation p.N85K 0.40 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 2 74902971 74902971 G T SEMA4F Missense_Mutation p.Q526H 0.36 deleterious(0) possibly_damaging(0.892) TCGA-DU-6392-01 2 75107511 75107511 G A HK2 Missense_Mutation p.R462Q 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-DU-6392-01 2 75113686 75113686 G A HK2 Missense_Mutation p.R702Q 0.34 tolerated(0.24) benign(0.026) TCGA-DU-6392-01 2 75720698 75720698 G A EVA1A Silent p.G41G 0.46 TCGA-DU-6392-01 2 75879388 75879388 T C MRPL19 Splice_Site p.X114_splice 0.24 TCGA-DU-6392-01 2 75879745 75879745 G A MRPL19 Missense_Mutation p.G146E 0.40 tolerated(0.12) probably_damaging(1) TCGA-DU-6392-01 2 75891699 75891699 G T GCFC2 3'UTR 0.50 TCGA-DU-6392-01 2 75891786 75891786 G A GCFC2 3'UTR 0.10 TCGA-DU-6392-01 2 77748823 77748823 C A LRRTM4 5'UTR 0.32 TCGA-DU-6392-01 2 80874864 80874864 C T CTNNA2 Missense_Mutation p.A862V 0.42 tolerated(0.12) probably_damaging(0.943) TCGA-DU-6392-01 2 84518368 84518368 C T FUNDC2P2 RNA 0.39 TCGA-DU-6392-01 2 84804521 84804521 C T DNAH6 Nonsense_Mutation p.R689* 0.32 TCGA-DU-6392-01 2 85097653 85097653 C T TRABD2A Missense_Mutation p.R122H 0.30 tolerated(0.06) benign(0.135) TCGA-DU-6392-01 2 85262220 85262220 C T KCMF1 Missense_Mutation p.T89M 0.33 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 2 85280333 85280333 G A KCMF1 Missense_Mutation p.R316H 0.39 tolerated(0.09) benign(0.155) TCGA-DU-6392-01 2 85570391 85570391 T C RETSAT Missense_Mutation p.I603V 0.09 tolerated(0.68) benign(0.002) TCGA-DU-6392-01 2 85571786 85571786 C T RETSAT Missense_Mutation p.G396D 0.29 deleterious(0) probably_damaging(0.977) TCGA-DU-6392-01 2 85573132 85573132 T C RETSAT Silent p.E361E 0.42 TCGA-DU-6392-01 2 85573180 85573180 G T RETSAT Silent p.I345I 0.43 TCGA-DU-6392-01 2 85577194 85577194 C A RETSAT Missense_Mutation p.Q256H 0.35 tolerated(0.15) benign(0.021) TCGA-DU-6392-01 2 85617352 85617352 C T ELMOD3 Missense_Mutation p.R303W 0.11 deleterious(0.01) possibly_damaging(0.784) TCGA-DU-6392-01 2 85628938 85628938 C A CAPG Nonsense_Mutation p.E56* 0.44 TCGA-DU-6392-01 2 85769031 85769031 C T MAT2A Missense_Mutation p.A162V 0.41 tolerated(0.16) benign(0.011) TCGA-DU-6392-01 2 85848692 85848692 G A USP39 Silent p.K141K 0.37 TCGA-DU-6392-01 2 85868167 85868167 C A USP39 Silent p.I451I 0.42 TCGA-DU-6392-01 2 86254575 86254575 G T POLR1A Missense_Mutation p.L1712M 0.36 tolerated(0.11) probably_damaging(0.938) TCGA-DU-6392-01 2 86258711 86258711 G A POLR1A Silent p.N1440N 0.43 TCGA-DU-6392-01 2 86272844 86272844 G T POLR1A Missense_Mutation p.L928M 0.49 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 2 86276317 86276317 C T POLR1A Missense_Mutation p.R814H 0.34 deleterious(0.03) benign(0.001) TCGA-DU-6392-01 2 86297353 86297353 G A POLR1A Nonsense_Mutation p.R552* 0.42 TCGA-DU-6392-01 2 86315723 86315723 G A POLR1A Silent p.H232H 0.12 TCGA-DU-6392-01 2 86364603 86364603 G T PTCD3 Missense_Mutation p.S664I 0.33 tolerated(0.09) benign(0.058) TCGA-DU-6392-01 2 86378642 86378642 A G IMMT Silent p.A393A 0.13 TCGA-DU-6392-01 2 86701913 86701913 A G KDM3A Missense_Mutation p.K580R 0.38 tolerated(0.35) benign(0.059) TCGA-DU-6392-01 2 86705788 86705788 C T KDM3A Missense_Mutation p.A749V 0.22 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 2 86719198 86719198 G T KDM3A Missense_Mutation p.V1308F 0.30 deleterious(0) possibly_damaging(0.86) TCGA-DU-6392-01 2 86831491 86831491 G A RNF103 Silent p.N511N 0.41 TCGA-DU-6392-01 2 86979116 86979116 G A RMND5A Missense_Mutation p.R128Q 0.54 tolerated(0.1) benign(0.271) TCGA-DU-6392-01 2 86997171 86997171 C T RMND5A Missense_Mutation p.P294S 0.06 deleterious(0.01) possibly_damaging(0.688) TCGA-DU-6392-01 2 88387390 88387390 G A SMYD1 Silent p.A108A 0.39 TCGA-DU-6392-01 2 88828648 88828648 G T TEX37 Missense_Mutation p.G67W 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-6392-01 2 88874582 88874582 C A EIF2AK3 Missense_Mutation p.V807L 0.34 tolerated(0.09) benign(0.442) TCGA-DU-6392-01 2 8938388 8938388 C A KIDINS220 Missense_Mutation p.A315S 0.29 tolerated(0.1) probably_damaging(0.983) TCGA-DU-6392-01 2 89442605 89442605 T C IGKV3-20 5'UTR 0.35 TCGA-DU-6392-01 2 8957802 8957802 C T KIDINS220 Silent p.V84V 0.37 TCGA-DU-6392-01 2 8998833 8998833 C T MBOAT2 Silent p.S513S 0.41 TCGA-DU-6392-01 2 90060890 90060890 G T IGKV6D-21 Silent p.S79S 0.42 TCGA-DU-6392-01 2 90199087 90199087 G T IGKV1D-12 Missense_Mutation p.R83M 0.13 deleterious(0.01) possibly_damaging(0.815) TCGA-DU-6392-01 2 9475264 9475264 C T ASAP2 Missense_Mutation p.L269F 0.38 deleterious(0) probably_damaging(0.957) TCGA-DU-6392-01 2 9496443 9496443 C T ASAP2 Silent p.G432G 0.23 TCGA-DU-6392-01 2 9547050 9547050 G T ITGB1BP1 Intron 0.32 TCGA-DU-6392-01 2 9558819 9558819 C T ITGB1BP1 Missense_Mutation p.R3H 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-DU-6392-01 2 9571002 9571002 A G CPSF3 Missense_Mutation p.K112E 0.43 deleterious(0) possibly_damaging(0.78) TCGA-DU-6392-01 2 95753150 95753150 C A MRPS5 Missense_Mutation p.Q415H 0.11 deleterious(0.03) benign(0.318) TCGA-DU-6392-01 2 95775727 95775728 - T MRPS5 Frame_Shift_Ins p.G113Rfs*7 0.33 TCGA-DU-6392-01 2 95843352 95843352 T C ZNF2 Missense_Mutation p.L53S 0.46 deleterious(0.01) benign(0.134) TCGA-DU-6392-01 2 95940258 95940258 G A PROM2 5'UTR 0.41 TCGA-DU-6392-01 2 95941712 95941712 C A PROM2 Missense_Mutation p.A110D 0.29 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 2 95944853 95944853 G A PROM2 Missense_Mutation p.R412H 0.40 tolerated(0.07) probably_damaging(0.99) TCGA-DU-6392-01 2 95947042 95947042 G A PROM2 Missense_Mutation p.A494T 0.36 tolerated(0.15) benign(0.021) TCGA-DU-6392-01 2 95950733 95950733 G A PROM2 Missense_Mutation p.R582Q 0.29 tolerated(1) benign(0) TCGA-DU-6392-01 2 95950734 95950734 G A PROM2 Silent p.R582R 0.31 TCGA-DU-6392-01 2 95953982 95953982 C T PROM2 Silent p.C756C 0.24 TCGA-DU-6392-01 2 96078450 96078450 G A FAHD2A Missense_Mutation p.V274I 0.38 tolerated(0.47) benign(0.015) TCGA-DU-6392-01 2 9630239 9630239 G A ADAM17 3'UTR 0.50 TCGA-DU-6392-01 2 96795662 96795662 C T ASTL Missense_Mutation p.V259I 0.24 tolerated(0.12) benign(0.1) TCGA-DU-6392-01 2 96798360 96798360 G A ASTL Missense_Mutation p.H186Y 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 96858172 96858172 C A STARD7 Nonsense_Mutation p.E260* 0.06 TCGA-DU-6392-01 2 96953207 96953207 G A SNRNP200 Missense_Mutation p.R1152C 0.14 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 2 96956538 96956538 C A SNRNP200 Missense_Mutation p.A813S 0.12 tolerated(0.09) possibly_damaging(0.57) TCGA-DU-6392-01 2 96991571 96991571 G T ITPRIPL1 5'Flank 0.09 TCGA-DU-6392-01 2 97009879 97009879 C A NCAPH Missense_Mutation p.A211D 0.24 tolerated(0.36) benign(0.143) TCGA-DU-6392-01 2 97217973 97217973 G A ARID5A Missense_Mutation p.A570T 0.41 tolerated(0.07) benign(0.038) TCGA-DU-6392-01 2 97369334 97369334 G A LMAN2L 3'Flank 0.20 TCGA-DU-6392-01 2 97427600 97427600 G T CNNM4 Missense_Mutation p.Q288H 0.09 tolerated(0.22) probably_damaging(0.999) TCGA-DU-6392-01 2 97474383 97474383 C A CNNM4 Silent p.T678T 0.21 TCGA-DU-6392-01 2 97494867 97494867 G A CNNM3 Silent p.A685A 0.11 TCGA-DU-6392-01 2 9770415 9770415 C A YWHAQ Missense_Mutation p.R56M 0.11 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-DU-6392-01 2 98351726 98351726 G A ZAP70 Missense_Mutation p.V366M 0.42 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 2 98354296 98354296 G T ZAP70 Missense_Mutation p.S520I 0.06 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 98375414 98375414 G A TMEM131 Missense_Mutation p.A1770V 0.52 deleterious_low_confidence(0.02) benign(0.013) TCGA-DU-6392-01 2 98375500 98375500 G A TMEM131 Silent p.L1741L 0.31 TCGA-DU-6392-01 2 98383045 98383045 G T TMEM131 Missense_Mutation p.T1490N 0.09 deleterious_low_confidence(0.02) benign(0.1) TCGA-DU-6392-01 2 98409946 98409946 G A TMEM131 Missense_Mutation p.R1153W 0.62 deleterious(0) probably_damaging(0.977) TCGA-DU-6392-01 2 98736143 98736143 G T VWA3B Missense_Mutation p.E153D 0.10 tolerated(0.21) benign(0.117) TCGA-DU-6392-01 2 98852926 98852926 G T VWA3B Missense_Mutation p.Q834H 0.47 tolerated(0.08) benign(0.005) TCGA-DU-6392-01 2 98928714 98928714 G A VWA3B Missense_Mutation p.A1263T 0.47 tolerated_low_confidence(0.36) benign(0) TCGA-DU-6392-01 2 98999890 98999890 C T CNGA3 Silent p.N145N 0.24 TCGA-DU-6392-01 2 99013275 99013275 G A CNGA3 Missense_Mutation p.G548R 0.06 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 2 99182579 99182579 G A INPP4A Silent p.V794V 0.44 TCGA-DU-6392-01 2 99811658 99811658 T G MRPL30 Missense_Mutation p.V120G 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.504) TCGA-DU-6392-01 2 99936110 99936110 A - TXNDC9 3'UTR 0.34 TCGA-DU-6392-01 3 100015051 100015051 G T TBC1D23 Nonsense_Mutation p.E270* 0.31 TCGA-DU-6392-01 3 100057992 100057992 C T NIT2 Silent p.R23R 0.24 TCGA-DU-6392-01 3 100058021 100058021 C T NIT2 Missense_Mutation p.T33M 0.08 deleterious(0.03) possibly_damaging(0.505) TCGA-DU-6392-01 3 100058042 100058042 C A NIT2 Missense_Mutation p.S40Y 0.34 deleterious(0) possibly_damaging(0.515) TCGA-DU-6392-01 3 100365443 100365443 T C GPR128 Missense_Mutation p.Y381H 0.10 tolerated(0.46) benign(0.376) TCGA-DU-6392-01 3 100365530 100365530 T C GPR128 Missense_Mutation p.C410R 0.18 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 100368606 100368606 C A GPR128 Missense_Mutation p.S445Y 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 100447624 100447624 C T TFG Nonsense_Mutation p.R113* 0.46 TCGA-DU-6392-01 3 100455466 100455466 C T TFG Silent p.S209S 0.45 TCGA-DU-6392-01 3 100489739 100489739 G A ABI3BP Missense_Mutation p.S819F 0.39 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 3 100617649 100617649 G A ABI3BP Missense_Mutation p.P147S 0.52 deleterious(0.01) possibly_damaging(0.641) TCGA-DU-6392-01 3 10105596 10105596 G T FANCD2 Splice_Site p.X649_splice 0.27 TCGA-DU-6392-01 3 10122797 10122797 G A FANCD2 Missense_Mutation p.R997Q 0.43 tolerated(0.14) benign(0.072) TCGA-DU-6392-01 3 101378786 101378786 C T ZBTB11 Silent p.S629S 0.39 TCGA-DU-6392-01 3 101383909 101383909 G A ZBTB11 Nonsense_Mutation p.R508* 0.33 TCGA-DU-6392-01 3 101474341 101474341 C T CEP97 Missense_Mutation p.L266F 0.30 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 3 101572669 101572669 C T NFKBIZ Silent p.S433S 0.31 TCGA-DU-6392-01 3 10283837 10283838 - A IRAK2 Frame_Shift_Ins p.R603Kfs*19 0.19 TCGA-DU-6392-01 3 10302299 10302299 G A TATDN2 Missense_Mutation p.C298Y 0.08 tolerated(0.07) benign(0.091) TCGA-DU-6392-01 3 10353769 10353769 G A SEC13 Silent p.C110C 0.40 TCGA-DU-6392-01 3 10420081 10420081 G A ATP2B2 Silent p.D352D 0.27 TCGA-DU-6392-01 3 10452379 10452379 G A ATP2B2 Missense_Mutation p.T107M 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 105253607 105253607 G A ALCAM Missense_Mutation p.M216I 0.36 tolerated(0.32) benign(0.002) TCGA-DU-6392-01 3 105264032 105264032 G A ALCAM Intron 0.52 TCGA-DU-6392-01 3 105389183 105389183 A G CBLB Silent p.D861D 0.36 TCGA-DU-6392-01 3 107096457 107096457 G T CCDC54 Missense_Mutation p.R8M 0.19 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 107765997 107765997 G A CD47 3'UTR 0.27 TCGA-DU-6392-01 3 108074138 108074138 C G HHLA2 Missense_Mutation p.L199V 0.38 tolerated(0.63) benign(0.123) TCGA-DU-6392-01 3 108181966 108181966 G T MYH15 Missense_Mutation p.T639N 0.30 deleterious(0.02) possibly_damaging(0.649) TCGA-DU-6392-01 3 108366851 108366851 C T DZIP3 Silent p.Y618Y 0.10 TCGA-DU-6392-01 3 109027001 109027001 G T DPPA2 Missense_Mutation p.T179N 0.34 tolerated(0.06) possibly_damaging(0.846) TCGA-DU-6392-01 3 111632216 111632216 G A PHLDB2 Silent p.K462K 0.57 TCGA-DU-6392-01 3 111697940 111697940 C T ABHD10 Missense_Mutation p.A11V 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-DU-6392-01 3 111732374 111732374 C T TAGLN3 Silent p.Y192Y 0.39 TCGA-DU-6392-01 3 111766665 111766665 G A TMPRSS7 Silent p.R144R 0.41 TCGA-DU-6392-01 3 111782478 111782478 C T TMPRSS7 Silent p.C392C 0.42 TCGA-DU-6392-01 3 111870782 111870782 C A SLC9C1 Missense_Mutation p.R1149M 0.31 deleterious_low_confidence(0.03) benign(0.099) TCGA-DU-6392-01 3 111888171 111888171 C T SLC9C1 Missense_Mutation p.C975Y 0.44 tolerated(0.56) benign(0.015) TCGA-DU-6392-01 3 111923202 111923202 C T SLC9C1 Missense_Mutation p.E679K 0.34 deleterious(0.02) possibly_damaging(0.581) TCGA-DU-6392-01 3 111936295 111936295 G A SLC9C1 Missense_Mutation p.P595L 0.29 tolerated(0.11) benign(0.21) TCGA-DU-6392-01 3 112198487 112198487 T C BTLA Missense_Mutation p.K73R 0.07 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 3 112337934 112337934 G A CCDC80 Nonsense_Mutation p.R685* 0.14 TCGA-DU-6392-01 3 112732162 112732162 T C C3orf17 Missense_Mutation p.K144E 0.21 deleterious(0.03) possibly_damaging(0.797) TCGA-DU-6392-01 3 113002407 113002407 G A BOC Missense_Mutation p.V861I 0.31 tolerated(0.07) probably_damaging(0.997) TCGA-DU-6392-01 3 113184616 113184616 G A SPICE1 Missense_Mutation p.R391C 0.32 tolerated(0.06) probably_damaging(0.975) TCGA-DU-6392-01 3 113377544 113377544 G T KIAA2018 Silent p.T995T 0.09 TCGA-DU-6392-01 3 113378522 113378522 C A KIAA2018 Missense_Mutation p.Q669H 0.39 probably_damaging(0.998) TCGA-DU-6392-01 3 113379797 113379797 G A KIAA2018 Silent p.S244S 0.47 TCGA-DU-6392-01 3 113517137 113517137 C A ATP6V1A Silent p.P446P 0.09 TCGA-DU-6392-01 3 113655184 113655184 C T GRAMD1C Nonsense_Mutation p.R510* 0.33 TCGA-DU-6392-01 3 113684177 113684177 C T KIAA1407 Nonsense_Mutation p.W879* 0.08 TCGA-DU-6392-01 3 113866319 113866319 C T DRD3 Missense_Mutation p.V157I 0.10 deleterious(0.01) benign(0.343) TCGA-DU-6392-01 3 113890729 113890729 G A DRD3 Silent p.C37C 0.49 TCGA-DU-6392-01 3 114070389 114070389 A G ZBTB20 Missense_Mutation p.I179T 0.11 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 3 11468278 11468278 G A ATG7 Missense_Mutation p.V653I 0.33 tolerated(0.13) benign(0.027) TCGA-DU-6392-01 3 11468322 11468322 G T ATG7 Missense_Mutation p.K667N 0.36 tolerated(0.11) benign(0.005) TCGA-DU-6392-01 3 115561378 115561378 G A LSAMP Nonsense_Mutation p.R233* 0.28 TCGA-DU-6392-01 3 11643484 11643484 A G VGLL4 Missense_Mutation p.L32P 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 3 118624442 118624442 C T IGSF11 Splice_Site p.X235_splice 0.12 TCGA-DU-6392-01 3 118649028 118649028 G A IGSF11 Silent p.S49S 0.36 TCGA-DU-6392-01 3 118935107 118935107 G A B4GALT4 Silent p.G294G 0.23 TCGA-DU-6392-01 3 119128599 119128599 C T ARHGAP31 Silent p.A634A 0.31 TCGA-DU-6392-01 3 119134498 119134498 G A ARHGAP31 Missense_Mutation p.G1241E 0.38 tolerated(1) benign(0.016) TCGA-DU-6392-01 3 119176890 119176890 T G TMEM39A Missense_Mutation p.N104T 0.11 deleterious(0.02) benign(0.082) TCGA-DU-6392-01 3 119276615 119276615 T G CD80 5'UTR 0.23 TCGA-DU-6392-01 3 119305312 119305312 G A ADPRH Missense_Mutation p.R160Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 119328400 119328400 G T PLA1A Missense_Mutation p.G180V 0.13 tolerated(0.12) benign(0.351) TCGA-DU-6392-01 3 119334871 119334871 G A PLA1A Missense_Mutation p.R226Q 0.14 tolerated(0.05) benign(0.273) TCGA-DU-6392-01 3 119449127 119449127 G A MAATS1 Silent p.Q307Q 0.39 TCGA-DU-6392-01 3 119462955 119462955 G A MAATS1 Missense_Mutation p.R605H 0.44 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 3 119536117 119536117 G A NR1I2 3'UTR 0.32 TCGA-DU-6392-01 3 120121677 120121677 G A FSTL1 Silent p.V261V 0.29 TCGA-DU-6392-01 3 120347061 120347061 G T HGD 3'UTR 0.50 TCGA-DU-6392-01 3 120352051 120352051 G T HGD Nonsense_Mutation p.C377* 0.38 TCGA-DU-6392-01 3 120365896 120365896 G A HGD Missense_Mutation p.P158L 0.35 deleterious(0.02) probably_damaging(0.99) TCGA-DU-6392-01 3 120469544 120469544 C T GTF2E1 Silent p.L49L 0.43 TCGA-DU-6392-01 3 120489701 120489701 G A GTF2E1 Missense_Mutation p.R192Q 0.38 deleterious(0.04) benign(0.146) TCGA-DU-6392-01 3 120500072 120500072 A T GTF2E1 Missense_Mutation p.S359C 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 121126116 121126116 G A STXBP5L Missense_Mutation p.V896M 0.31 deleterious(0.03) possibly_damaging(0.908) TCGA-DU-6392-01 3 121126125 121126125 T C STXBP5L Missense_Mutation p.F899L 0.09 tolerated(0.17) probably_damaging(0.959) TCGA-DU-6392-01 3 121304887 121304887 C T ARGFX Nonsense_Mutation p.R130* 0.34 TCGA-DU-6392-01 3 121305164 121305164 C A ARGFX Missense_Mutation p.S222Y 0.08 deleterious(0) probably_damaging(0.956) TCGA-DU-6392-01 3 121341567 121341567 T A FBXO40 Missense_Mutation p.Y431N 0.43 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 3 121410038 121410038 G T GOLGB1 Missense_Mutation p.L2725I 0.08 probably_damaging(0.999) TCGA-DU-6392-01 3 121415041 121415041 A G GOLGB1 Silent p.A1443A 0.30 TCGA-DU-6392-01 3 121433774 121433774 C T GOLGB1 Silent p.L446L 0.34 TCGA-DU-6392-01 3 121634112 121634112 G A SLC15A2 Silent p.L189L 0.08 TCGA-DU-6392-01 3 121720628 121720628 C A ILDR1 Nonsense_Mutation p.G155* 0.37 TCGA-DU-6392-01 3 12195185 12195185 T C TIMP4 Missense_Mutation p.T169A 0.09 tolerated(0.46) benign(0.001) TCGA-DU-6392-01 3 122259582 122259582 C A PARP9 Missense_Mutation p.R536I 0.42 deleterious(0.01) benign(0.391) TCGA-DU-6392-01 3 122287567 122287567 C T DTX3L Missense_Mutation p.L211F 0.44 tolerated(0.69) benign(0.079) TCGA-DU-6392-01 3 122289445 122289445 C T DTX3L Silent p.R693R 0.08 TCGA-DU-6392-01 3 122351054 122351054 C T PARP15 Silent p.Y520Y 0.50 TCGA-DU-6392-01 3 122437669 122437669 G T PARP14 Missense_Mutation p.E1557D 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 122447187 122447187 G A PARP14 Missense_Mutation p.V1717I 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 3 122496626 122496626 C T HSPBAP1 Silent p.S64S 0.38 TCGA-DU-6392-01 3 122591370 122591370 C A DIRC2 Missense_Mutation p.T416N 0.43 tolerated(0.07) benign(0.248) TCGA-DU-6392-01 3 123038541 123038541 C A ADCY5 Nonsense_Mutation p.E746* 0.14 TCGA-DU-6392-01 3 123332911 123332911 C A MYLK 3'UTR 0.38 TCGA-DU-6392-01 3 123451899 123451899 C T MYLK Missense_Mutation p.V454M 0.41 tolerated(0.07) possibly_damaging(0.799) TCGA-DU-6392-01 3 124017690 124017690 A G KALRN Missense_Mutation p.E339G 0.11 deleterious(0.03) possibly_damaging(0.755) TCGA-DU-6392-01 3 124103819 124103819 G A KALRN Missense_Mutation p.R631H 0.42 deleterious(0.04) unknown(0) TCGA-DU-6392-01 3 124181472 124181472 C A KALRN Missense_Mutation p.F1339L 0.38 deleterious(0.02) possibly_damaging(0.893) TCGA-DU-6392-01 3 124215217 124215217 C A KALRN Missense_Mutation p.S1629Y 0.15 deleterious(0) possibly_damaging(0.861) TCGA-DU-6392-01 3 124377281 124377281 C T KALRN Missense_Mutation p.R105W 0.32 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 124635295 124635295 G A MUC13 Missense_Mutation p.A277V 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-DU-6392-01 3 124732733 124732734 - T HEG1 Frame_Shift_Ins p.G564Rfs*11 0.08 TCGA-DU-6392-01 3 124906141 124906141 G T SLC12A8 Silent p.I110I 0.38 TCGA-DU-6392-01 3 124952746 124952746 C T ZNF148 Missense_Mutation p.R275H 0.43 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 3 125170247 125170247 C T SNX4 Missense_Mutation p.A403T 0.33 deleterious(0) benign(0.083) TCGA-DU-6392-01 3 125208288 125208288 G A SNX4 Missense_Mutation p.A206V 0.36 deleterious(0) benign(0.371) TCGA-DU-6392-01 3 12545146 12545146 C T TSEN2 Missense_Mutation p.R232C 0.53 tolerated(0.28) benign(0) TCGA-DU-6392-01 3 125647534 125647534 G A ALG1L 3'Flank 0.27 TCGA-DU-6392-01 3 125694466 125694466 C T ROPN1B Silent p.V59V 0.37 TCGA-DU-6392-01 3 125725902 125725902 G A SLC41A3 Intron 0.39 TCGA-DU-6392-01 3 125741743 125741743 G A SLC41A3 Nonsense_Mutation p.R211* 0.43 TCGA-DU-6392-01 3 125828946 125828946 C A ALDH1L1 Nonsense_Mutation p.E740* 0.09 TCGA-DU-6392-01 3 125872275 125872275 C T ALDH1L1 Intron 0.09 TCGA-DU-6392-01 3 126062546 126062546 G T KLF15 3'UTR 0.09 TCGA-DU-6392-01 3 12613679 12613679 C A MKRN2 Missense_Mutation p.A150D 0.47 deleterious(0.02) probably_damaging(0.988) TCGA-DU-6392-01 3 126138971 126138971 G T CCDC37 Missense_Mutation p.W327C 0.52 tolerated(0.18) benign(0.003) TCGA-DU-6392-01 3 126178503 126178503 G A ZXDC Silent p.S735S 0.09 TCGA-DU-6392-01 3 126178581 126178581 C A ZXDC Splice_Site p.X710_splice 0.11 TCGA-DU-6392-01 3 126224682 126224682 G A UROC1 Silent p.T225T 0.28 TCGA-DU-6392-01 3 126255145 126255145 G T CHST13 Missense_Mutation p.W43C 0.27 tolerated(0.08) probably_damaging(0.915) TCGA-DU-6392-01 3 126268739 126268739 G A C3orf22 Missense_Mutation p.A133V 0.32 tolerated(0.71) possibly_damaging(0.873) TCGA-DU-6392-01 3 126708301 126708301 G A PLXNA1 Missense_Mutation p.D289N 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 126734114 126734114 G T PLXNA1 Missense_Mutation p.G989C 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 126735848 126735848 C T PLXNA1 Missense_Mutation p.R1082W 0.31 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 3 126739187 126739187 G T PLXNA1 Missense_Mutation p.E1346D 0.19 tolerated(0.49) probably_damaging(0.997) TCGA-DU-6392-01 3 127390345 127390345 C T PODXL2 Silent p.Y498Y 0.39 TCGA-DU-6392-01 3 127413948 127413948 C T MGLL Missense_Mutation p.R229Q 0.11 tolerated(0.1) benign(0.195) TCGA-DU-6392-01 3 127642601 127642601 G T KBTBD12 Missense_Mutation p.A233S 0.13 tolerated(0.1) possibly_damaging(0.836) TCGA-DU-6392-01 3 127642974 127642974 G T KBTBD12 Missense_Mutation p.R357M 0.14 tolerated(0.09) possibly_damaging(0.54) TCGA-DU-6392-01 3 127831743 127831743 G A RUVBL1 Missense_Mutation p.R117C 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 12858323 12858323 T C CAND2 Missense_Mutation p.I631T 0.40 deleterious(0.03) benign(0.014) TCGA-DU-6392-01 3 12858532 12858532 G A CAND2 Missense_Mutation p.A701T 0.11 tolerated(0.46) benign(0.089) TCGA-DU-6392-01 3 128627876 128627876 C T ACAD9 Silent p.D473D 0.36 TCGA-DU-6392-01 3 128631414 128631414 C A ACAD9 Silent p.A610A 0.31 TCGA-DU-6392-01 3 128706480 128706480 C T KIAA1257 Missense_Mutation p.V216M 0.34 tolerated(0.16) benign(0.206) TCGA-DU-6392-01 3 128706483 128706483 C T KIAA1257 Missense_Mutation p.D215N 0.35 deleterious(0.02) benign(0.098) TCGA-DU-6392-01 3 12877613 12877613 G A RPL32 Missense_Mutation p.R130C 0.45 tolerated(0.26) benign(0) TCGA-DU-6392-01 3 128780695 128780695 G A GP9 Missense_Mutation p.C38Y 0.50 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 12881651 12881651 A G RPL32 Missense_Mutation p.V29A 0.09 tolerated(0.23) benign(0.062) TCGA-DU-6392-01 3 128889325 128889325 G A CNBP Missense_Mutation p.R171W 0.08 deleterious(0.02) probably_damaging(0.985) TCGA-DU-6392-01 3 128890339 128890339 C T CNBP Missense_Mutation p.R56H 0.43 deleterious(0.05) possibly_damaging(0.824) TCGA-DU-6392-01 3 128987792 128987792 G A COPG1 Missense_Mutation p.A598T 0.44 tolerated(0.57) benign(0) TCGA-DU-6392-01 3 129116154 129116154 G T EFCAB12 3'Flank 0.30 TCGA-DU-6392-01 3 129156736 129156736 C T MBD4 Missense_Mutation p.M54I 0.42 tolerated(0.16) benign(0.009) TCGA-DU-6392-01 3 129196977 129196977 G A IFT122 Missense_Mutation p.M473I 0.32 deleterious(0.01) probably_damaging(0.915) TCGA-DU-6392-01 3 129207235 129207235 A G IFT122 Missense_Mutation p.K714E 0.18 deleterious(0.01) benign(0.419) TCGA-DU-6392-01 3 129252543 129252543 C T RHO Silent p.S343S 0.51 TCGA-DU-6392-01 3 129275975 129275975 G A PLXND1 Missense_Mutation p.T1846M 0.44 tolerated(0.09) benign(0.104) TCGA-DU-6392-01 3 129289894 129289894 G T PLXND1 Missense_Mutation p.L1197I 0.07 tolerated(0.05) possibly_damaging(0.653) TCGA-DU-6392-01 3 129324846 129324846 A G PLXND1 Missense_Mutation p.Y213H 0.25 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 129389445 129389445 A G TMCC1 Silent p.S413S 0.11 TCGA-DU-6392-01 3 129389913 129389913 G A TMCC1 Silent p.D257D 0.41 TCGA-DU-6392-01 3 12977909 12977909 G T IQSEC1 Missense_Mutation p.L217I 0.09 tolerated(0.47) benign(0.001) TCGA-DU-6392-01 3 130159148 130159148 T C COL6A5 Missense_Mutation p.V1989A 0.45 tolerated(0.58) benign(0.008) TCGA-DU-6392-01 3 130285612 130285612 C T COL6A6 Missense_Mutation p.T450I 0.17 tolerated(0.18) probably_damaging(0.958) TCGA-DU-6392-01 3 130300717 130300717 C T COL6A6 Missense_Mutation p.T1287I 0.31 tolerated(0.06) benign(0.358) TCGA-DU-6392-01 3 130405075 130405075 T C PIK3R4 Missense_Mutation p.H1152R 0.41 tolerated(0.24) benign(0.186) TCGA-DU-6392-01 3 130452730 130452730 T C PIK3R4 Missense_Mutation p.K371R 0.07 tolerated(0.42) benign(0.003) TCGA-DU-6392-01 3 132169630 132169630 T C DNAJC13 Missense_Mutation p.F159S 0.08 deleterious(0) possibly_damaging(0.53) TCGA-DU-6392-01 3 132218639 132218639 A G DNAJC13 Missense_Mutation p.D1468G 0.30 deleterious(0.01) possibly_damaging(0.806) TCGA-DU-6392-01 3 132278741 132278741 C T ACAD11 Missense_Mutation p.V722I 0.31 tolerated(1) benign(0.003) TCGA-DU-6392-01 3 132361638 132361638 T G ACAD11 Missense_Mutation p.R86S 0.12 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 3 132408040 132408040 C A NPHP3 Nonsense_Mutation p.E921* 0.10 TCGA-DU-6392-01 3 133118940 133118940 C T BFSP2 Nonsense_Mutation p.R5* 0.09 TCGA-DU-6392-01 3 133193821 133193821 G T BFSP2 3'UTR 0.08 TCGA-DU-6392-01 3 133306798 133306798 G A CDV3 Missense_Mutation p.E229K 0.37 tolerated(0.09) probably_damaging(0.997) TCGA-DU-6392-01 3 133329880 133329880 T - TOPBP1 Frame_Shift_Del p.I1381Sfs*61 0.08 TCGA-DU-6392-01 3 133358811 133358811 G A TOPBP1 Missense_Mutation p.T742I 0.38 deleterious(0.04) benign(0.01) TCGA-DU-6392-01 3 133362997 133362997 G A TOPBP1 Missense_Mutation p.A572V 0.32 tolerated(0.28) benign(0.002) TCGA-DU-6392-01 3 133467331 133467331 G A TF Missense_Mutation p.S40N 0.33 tolerated(0.22) benign(0.014) TCGA-DU-6392-01 3 133653645 133653645 G A SLCO2A1 Missense_Mutation p.A615V 0.34 tolerated(1) benign(0.001) TCGA-DU-6392-01 3 13378358 13378358 C T NUP210 Missense_Mutation p.V1205M 0.36 tolerated(0.26) benign(0.154) TCGA-DU-6392-01 3 13381787 13381787 C T NUP210 Silent p.P1080P 0.13 TCGA-DU-6392-01 3 133896788 133896788 T C RYK Silent p.P435P 0.08 TCGA-DU-6392-01 3 134085261 134085261 G A AMOTL2 Silent p.S350S 0.09 TCGA-DU-6392-01 3 134278117 134278117 G A CEP63 Missense_Mutation p.S600N 0.43 tolerated(0.15) benign(0.198) TCGA-DU-6392-01 3 134881021 134881021 C T EPHB1 Silent p.D528D 0.35 TCGA-DU-6392-01 3 135806764 135806764 C T PPP2R3A Missense_Mutation p.A943V 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 3 135870463 135870463 G T MSL2 Missense_Mutation p.H420Q 0.06 tolerated(0.12) possibly_damaging(0.578) TCGA-DU-6392-01 3 135871112 135871112 C A MSL2 Missense_Mutation p.R204I 0.41 tolerated(0.07) benign(0.018) TCGA-DU-6392-01 3 136045702 136045702 C T PCCB Missense_Mutation p.A403V 0.37 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-DU-6392-01 3 136048855 136048855 A C PCCB Missense_Mutation p.N556T 0.10 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-DU-6392-01 3 136076622 136076622 G A STAG1 Missense_Mutation p.A1002V 0.10 deleterious(0.02) possibly_damaging(0.517) TCGA-DU-6392-01 3 136260977 136260977 G T STAG1 Missense_Mutation p.T152N 0.34 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 3 136573853 136573853 C T SLC35G2 Missense_Mutation p.T184I 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-DU-6392-01 3 136574386 136574386 C T SLC35G2 Nonsense_Mutation p.Q362* 0.36 TCGA-DU-6392-01 3 136574583 136574583 T C SLC35G2 3'UTR 0.38 TCGA-DU-6392-01 3 136665137 136665137 G A NCK1 Silent p.S313S 0.27 TCGA-DU-6392-01 3 136699435 136699435 G T IL20RB Splice_Site p.X72_splice 0.40 TCGA-DU-6392-01 3 13670465 13670465 C T FBLN2 Missense_Mutation p.T877M 0.12 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 3 13679300 13679300 C T FBLN2 Missense_Mutation p.R1193W 0.15 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 137790485 137790485 C A DZIP1L Missense_Mutation p.V539F 0.33 deleterious(0.01) possibly_damaging(0.494) TCGA-DU-6392-01 3 137881272 137881272 G T DBR1 Missense_Mutation p.P365H 0.37 deleterious(0) possibly_damaging(0.899) TCGA-DU-6392-01 3 137890476 137890476 T G DBR1 Missense_Mutation p.K134N 0.11 deleterious(0) possibly_damaging(0.463) TCGA-DU-6392-01 3 137982647 137982647 C T ARMC8 Missense_Mutation p.R387W 0.44 deleterious(0) possibly_damaging(0.899) TCGA-DU-6392-01 3 138091848 138091848 C A MRAS Missense_Mutation p.D41E 0.12 tolerated(0.88) benign(0.061) TCGA-DU-6392-01 3 138187662 138187662 G T ESYT3 Missense_Mutation p.R458I 0.40 deleterious(0.01) possibly_damaging(0.794) TCGA-DU-6392-01 3 138256110 138256110 A G CEP70 Missense_Mutation p.L182S 0.49 tolerated(0.2) probably_damaging(0.917) TCGA-DU-6392-01 3 138426069 138426069 C T PIK3CB Missense_Mutation p.A488T 0.14 tolerated(0.11) benign(0.344) TCGA-DU-6392-01 3 138664485 138664485 G A FOXL2 Silent p.Y360Y 0.37 TCGA-DU-6392-01 3 138763115 138763115 G A PRR23C Silent p.G116G 0.44 TCGA-DU-6392-01 3 139069024 139069024 C T MRPS22 Missense_Mutation p.R170C 0.38 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 3 139079976 139079976 C T COPB2 Silent p.A719A 0.10 TCGA-DU-6392-01 3 139090653 139090653 C A COPB2 Missense_Mutation p.G373W 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 139092102 139092102 G A COPB2 Silent p.G349G 0.31 TCGA-DU-6392-01 3 139257633 139257633 C T RBP1 Missense_Mutation p.R143H 0.24 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 3 139280028 139280028 G A NMNAT3 Missense_Mutation p.P158S 0.48 tolerated(0.11) benign(0.001) TCGA-DU-6392-01 3 139894901 139894901 C T CLSTN2 Missense_Mutation p.P73L 0.37 deleterious(0.01) probably_damaging(0.965) TCGA-DU-6392-01 3 140123471 140123471 C T CLSTN2 Missense_Mutation p.A167V 0.44 tolerated(0.13) benign(0.387) TCGA-DU-6392-01 3 140185494 140185494 G A CLSTN2 Missense_Mutation p.R422H 0.45 deleterious(0.02) possibly_damaging(0.828) TCGA-DU-6392-01 3 140401710 140401710 C T TRIM42 Missense_Mutation p.R250C 0.41 deleterious(0) probably_damaging(0.912) TCGA-DU-6392-01 3 140407030 140407030 C T TRIM42 Silent p.D502D 0.35 TCGA-DU-6392-01 3 140409860 140409860 C T TRIM42 Silent p.F637F 0.36 TCGA-DU-6392-01 3 140419810 140419810 C T TRIM42 Silent p.H722H 0.38 TCGA-DU-6392-01 3 141161619 141161619 C T ZBTB38 Missense_Mutation p.S130F 0.39 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 3 141161791 141161791 A G ZBTB38 Silent p.A187A 0.09 TCGA-DU-6392-01 3 141163946 141163946 G A ZBTB38 Missense_Mutation p.A906T 0.36 tolerated(0.4) benign(0.27) TCGA-DU-6392-01 3 141292883 141292883 G A RASA2 Missense_Mutation p.R486K 0.35 tolerated(0.16) probably_damaging(0.991) TCGA-DU-6392-01 3 141327524 141327524 G A RASA2 Missense_Mutation p.C737Y 0.37 deleterious(0) possibly_damaging(0.878) TCGA-DU-6392-01 3 14183116 14183116 G T TMEM43 Missense_Mutation p.D342Y 0.37 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 3 14200186 14200186 G A XPC Silent p.S399S 0.42 TCGA-DU-6392-01 3 142037526 142037526 C T XRN1 Missense_Mutation p.G1509D 0.32 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-DU-6392-01 3 142168414 142168414 G A ATR Nonsense_Mutation p.R2598* 0.35 TCGA-DU-6392-01 3 142226890 142226890 C A ATR Missense_Mutation p.Q1638H 0.09 deleterious(0) probably_damaging(0.935) TCGA-DU-6392-01 3 142281097 142281097 G A ATR Missense_Mutation p.L383F 0.38 deleterious_low_confidence(0.04) benign(0.013) TCGA-DU-6392-01 3 14239546 14239546 G A LSM3 Missense_Mutation p.R80Q 0.34 deleterious(0.03) possibly_damaging(0.558) TCGA-DU-6392-01 3 142496479 142496479 G A TRPC1 Missense_Mutation p.R213H 0.27 deleterious(0.01) possibly_damaging(0.9) TCGA-DU-6392-01 3 1425035 1425035 G T CNTN6 Missense_Mutation p.E820D 0.07 tolerated(0.08) benign(0.107) TCGA-DU-6392-01 3 142681702 142681702 C T PAQR9 Silent p.A159A 0.33 TCGA-DU-6392-01 3 143708484 143708484 A G C3orf58 Missense_Mutation p.Q365R 0.12 tolerated(0.72) benign(0.028) TCGA-DU-6392-01 3 14508123 14508123 C A SLC6A6 Missense_Mutation p.L278M 0.07 deleterious(0.02) probably_damaging(0.991) TCGA-DU-6392-01 3 14555201 14555201 G A GRIP2 RNA 0.32 TCGA-DU-6392-01 3 145914444 145914444 C T PLSCR4 Missense_Mutation p.G254D 0.39 tolerated(0.09) probably_damaging(0.953) TCGA-DU-6392-01 3 146171805 146171805 G A PLSCR2 Missense_Mutation p.A229V 0.45 deleterious(0.01) benign(0.221) TCGA-DU-6392-01 3 146239443 146239443 G T PLSCR1 Missense_Mutation p.T209N 0.50 tolerated(0.6) benign(0.008) TCGA-DU-6392-01 3 146246561 146246561 G A PLSCR1 Missense_Mutation p.A51V 0.38 tolerated(0.32) benign(0.034) TCGA-DU-6392-01 3 147113651 147113651 G A ZIC4 Nonsense_Mutation p.R276* 0.42 TCGA-DU-6392-01 3 14724142 14724142 C A C3orf20 5'UTR 0.11 TCGA-DU-6392-01 3 14862981 14862981 G A FGD5 Silent p.T801T 0.36 TCGA-DU-6392-01 3 148750076 148750076 A T HLTF Silent p.T987T 0.29 TCGA-DU-6392-01 3 148756915 148756915 G A HLTF Missense_Mutation p.T906I 0.28 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 148757856 148757856 C A HLTF Nonsense_Mutation p.E822* 0.22 TCGA-DU-6392-01 3 148759321 148759321 C T HLTF Missense_Mutation p.V778I 0.47 tolerated(0.24) probably_damaging(0.999) TCGA-DU-6392-01 3 148781309 148781309 C T HLTF Missense_Mutation p.A357T 0.31 tolerated(0.52) benign(0.002) TCGA-DU-6392-01 3 148789435 148789435 C A HLTF Nonsense_Mutation p.E213* 0.60 TCGA-DU-6392-01 3 148880648 148880648 C T HPS3 Nonsense_Mutation p.R822* 0.32 TCGA-DU-6392-01 3 148928055 148928055 T C CP Missense_Mutation p.E169G 0.11 tolerated(0.22) benign(0.024) TCGA-DU-6392-01 3 149684089 149684089 A G PFN2 3'UTR 0.45 TCGA-DU-6392-01 3 150659373 150659373 A G CLRN1 Silent p.I143I 0.28 TCGA-DU-6392-01 3 15073889 15073889 A G NR2C2 Missense_Mutation p.T391A 0.40 deleterious(0.03) benign(0.226) TCGA-DU-6392-01 3 150877651 150877651 G A MED12L Silent p.L290L 0.43 TCGA-DU-6392-01 3 150883718 150883718 G T MED12L Missense_Mutation p.E481D 0.08 tolerated(1) benign(0.015) TCGA-DU-6392-01 3 150916564 150916564 G A GPR171 Nonsense_Mutation p.R204* 0.34 TCGA-DU-6392-01 3 150930924 150930924 T C P2RY14 3'UTR 0.43 TCGA-DU-6392-01 3 151046359 151046360 - T P2RY13 Frame_Shift_Ins p.T162Nfs*50 0.23 TCGA-DU-6392-01 3 151055534 151055534 T G P2RY12 3'UTR 0.18 TCGA-DU-6392-01 3 151101986 151101986 A G MED12L Missense_Mutation p.N1601D 0.11 deleterious(0) possibly_damaging(0.803) TCGA-DU-6392-01 3 151129147 151129147 C A MED12L Missense_Mutation p.L1963M 0.09 tolerated_low_confidence(0.24) probably_damaging(0.987) TCGA-DU-6392-01 3 151163978 151163978 G T IGSF10 Missense_Mutation p.S1264Y 0.35 deleterious(0.01) possibly_damaging(0.541) TCGA-DU-6392-01 3 151165181 151165181 G A IGSF10 Missense_Mutation p.T863I 0.23 deleterious(0.04) benign(0.168) TCGA-DU-6392-01 3 151165238 151165238 G T IGSF10 Missense_Mutation p.P844H 0.12 deleterious(0) probably_damaging(0.972) TCGA-DU-6392-01 3 151165712 151165712 G T IGSF10 Missense_Mutation p.P686H 0.38 deleterious(0.01) possibly_damaging(0.72) TCGA-DU-6392-01 3 151474940 151474940 C A AADACL2 Missense_Mutation p.T255N 0.33 tolerated(0.11) benign(0.33) TCGA-DU-6392-01 3 151475308 151475308 A T AADACL2 Missense_Mutation p.T378S 0.37 tolerated(0.86) benign(0.013) TCGA-DU-6392-01 3 151598783 151598783 C T SUCNR1 Missense_Mutation p.T151I 0.40 tolerated(0.49) benign(0.085) TCGA-DU-6392-01 3 152553954 152553954 G T P2RY1 Missense_Mutation p.R128M 0.47 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 3 152880811 152880811 C T RAP2B Missense_Mutation p.P110L 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 15292681 15292681 C T CAPN7 Missense_Mutation p.P786S 0.39 deleterious(0) probably_damaging(0.958) TCGA-DU-6392-01 3 15298412 15298412 G A SH3BP5 Silent p.G366G 0.35 TCGA-DU-6392-01 3 154024015 154024015 G A DHX36 Missense_Mutation p.R295C 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 15478058 15478058 A C EAF1 Missense_Mutation p.S246R 0.36 deleterious(0.01) benign(0.08) TCGA-DU-6392-01 3 154802023 154802023 C T MME Nonsense_Mutation p.R23* 0.33 TCGA-DU-6392-01 3 154859820 154859820 C T MME Missense_Mutation p.T333I 0.37 deleterious(0.01) benign(0.446) TCGA-DU-6392-01 3 155199620 155199620 C T PLCH1 Missense_Mutation p.G1407S 0.08 tolerated_low_confidence(0.26) benign(0.15) TCGA-DU-6392-01 3 155210521 155210521 G A PLCH1 Silent p.G756G 0.51 TCGA-DU-6392-01 3 155215116 155215116 C A PLCH1 Silent p.V617V 0.22 TCGA-DU-6392-01 3 155311772 155311772 C G PLCH1 Missense_Mutation p.S131T 0.23 deleterious(0) possibly_damaging(0.783) TCGA-DU-6392-01 3 155560396 155560396 A - SLC33A1 Frame_Shift_Del p.F263Sfs*7 0.23 TCGA-DU-6392-01 3 156266708 156266708 C T SSR3 Silent p.K115K 0.09 TCGA-DU-6392-01 3 156422529 156422529 G C TIPARP Missense_Mutation p.R528T 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-DU-6392-01 3 156422836 156422836 G T TIPARP Missense_Mutation p.Q630H 0.10 deleterious(0.02) possibly_damaging(0.561) TCGA-DU-6392-01 3 156423008 156423008 G A TIPARP 3'UTR 0.32 TCGA-DU-6392-01 3 156867624 156867624 C T CCNL1 Splice_Site p.X341_splice 0.15 TCGA-DU-6392-01 3 157841751 157841751 G A RSRC1 Silent p.Q97Q 0.28 TCGA-DU-6392-01 3 158261971 158261971 G A RSRC1 Splice_Site p.X305_splice 0.38 TCGA-DU-6392-01 3 158262127 158262127 C T RSRC1 3'UTR 0.44 TCGA-DU-6392-01 3 158366903 158366903 G T GFM1 Missense_Mutation p.D216Y 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 158384464 158384464 G A LXN Missense_Mutation p.R214C 0.39 tolerated(0.21) benign(0.048) TCGA-DU-6392-01 3 158415601 158415601 G A RARRES1 Missense_Mutation p.R251C 0.33 deleterious(0.02) probably_damaging(0.93) TCGA-DU-6392-01 3 159713368 159713368 G A IL12A 3'UTR 0.43 TCGA-DU-6392-01 3 159976272 159976272 G A IFT80 3'UTR 0.47 TCGA-DU-6392-01 3 160148851 160148851 G A SMC4 Missense_Mutation p.R991H 0.41 tolerated(0.15) benign(0.035) TCGA-DU-6392-01 3 160156009 160156009 T G TRIM59 Missense_Mutation p.E321D 0.43 tolerated(0.37) benign(0.004) TCGA-DU-6392-01 3 160945126 160945126 A C NMD3 Missense_Mutation p.S91R 0.34 tolerated(0.09) benign(0.424) TCGA-DU-6392-01 3 161147157 161147157 T C RP11-3P17.4 RNA 0.35 TCGA-DU-6392-01 3 161221326 161221326 G A OTOL1 Missense_Mutation p.A344T 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 164700137 164700137 C A SI Missense_Mutation p.G1770V 0.30 deleterious(0.01) benign(0.076) TCGA-DU-6392-01 3 164750400 164750400 C T SI Silent p.G882G 0.33 TCGA-DU-6392-01 3 164776843 164776843 C T SI Missense_Mutation p.A436T 0.44 tolerated(0.31) benign(0.003) TCGA-DU-6392-01 3 164905746 164905746 G A SLITRK3 Missense_Mutation p.A958V 0.07 deleterious(0.01) possibly_damaging(0.679) TCGA-DU-6392-01 3 167189515 167189515 C A SERPINI2 Missense_Mutation p.E36D 0.13 tolerated(0.44) benign(0.144) TCGA-DU-6392-01 3 167245662 167245662 G C WDR49 Missense_Mutation p.D498E 0.38 deleterious(0) probably_damaging(0.948) TCGA-DU-6392-01 3 167245747 167245747 G A WDR49 Missense_Mutation p.S470L 0.13 deleterious(0.01) possibly_damaging(0.737) TCGA-DU-6392-01 3 167510432 167510432 C T SERPINI1 Missense_Mutation p.A179V 0.41 tolerated(1) benign(0.029) TCGA-DU-6392-01 3 168802722 168802722 G A MECOM Missense_Mutation p.A1109V 0.35 deleterious(0) unknown(0) TCGA-DU-6392-01 3 168834323 168834323 G T MECOM Missense_Mutation p.P323H 0.12 tolerated(0.06) probably_damaging(1) TCGA-DU-6392-01 3 168834464 168834464 G A MECOM Missense_Mutation p.A276V 0.39 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6392-01 3 168840452 168840452 C A MECOM Missense_Mutation p.K174N 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 168849257 168849257 G A MECOM Silent p.S67S 0.37 TCGA-DU-6392-01 3 169525279 169525279 C A LRRC34 Splice_Site p.X127_splice 0.34 TCGA-DU-6392-01 3 169540229 169540229 C T LRRIQ4 Nonsense_Mutation p.R174* 0.28 TCGA-DU-6392-01 3 169540252 169540252 C T LRRIQ4 Silent p.P181P 0.08 TCGA-DU-6392-01 3 169574164 169574164 T C LRRC31 Silent p.L261L 0.10 TCGA-DU-6392-01 3 169574503 169574503 C T LRRC31 Silent p.G215G 0.31 TCGA-DU-6392-01 3 169644693 169644693 G A SAMD7 Missense_Mutation p.A215T 0.13 tolerated(0.45) benign(0.007) TCGA-DU-6392-01 3 169644878 169644878 C T SAMD7 Silent p.D276D 0.32 TCGA-DU-6392-01 3 169802423 169802423 C A GPR160 Silent p.I221I 0.10 TCGA-DU-6392-01 3 169820406 169820406 G A PHC3 Silent p.S898S 0.35 TCGA-DU-6392-01 3 169863241 169863241 C T PHC3 Silent p.S214S 0.32 TCGA-DU-6392-01 3 169863247 169863247 C T PHC3 Silent p.S212S 0.47 TCGA-DU-6392-01 3 169977800 169977800 C A PRKCI Silent p.A89A 0.10 TCGA-DU-6392-01 3 170002337 170002337 C A PRKCI Missense_Mutation p.L386M 0.09 deleterious(0.05) possibly_damaging(0.827) TCGA-DU-6392-01 3 170078168 170078168 A C SKIL Missense_Mutation p.K17Q 0.39 deleterious_low_confidence(0.04) possibly_damaging(0.653) TCGA-DU-6392-01 3 170102422 170102422 C T SKIL Missense_Mutation p.S433F 0.08 tolerated(0.71) benign(0.005) TCGA-DU-6392-01 3 170204111 170204111 T C SLC7A14 Missense_Mutation p.D269G 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 17051820 17051820 A G PLCL2 Missense_Mutation p.K202E 0.07 tolerated(0.84) benign(0.015) TCGA-DU-6392-01 3 170744524 170744524 C T SLC2A2 5'UTR 0.38 TCGA-DU-6392-01 3 170819285 170819285 G A TNIK Silent p.S848S 0.34 TCGA-DU-6392-01 3 171392294 171392294 A T PLD1 Missense_Mutation p.V742E 0.46 deleterious(0) benign(0.241) TCGA-DU-6392-01 3 171392295 171392295 C T PLD1 Missense_Mutation p.V742I 0.15 deleterious(0.05) benign(0.005) TCGA-DU-6392-01 3 171417543 171417543 G A PLD1 Nonsense_Mutation p.R407* 0.42 TCGA-DU-6392-01 3 171426565 171426565 C T PLD1 Silent p.E375E 0.33 TCGA-DU-6392-01 3 171969176 171969176 C T FNDC3B Missense_Mutation p.S212F 0.32 deleterious(0) benign(0.028) TCGA-DU-6392-01 3 172065003 172065003 G T FNDC3B Missense_Mutation p.S789I 0.35 tolerated(0.35) benign(0.026) TCGA-DU-6392-01 3 172482124 172482124 C T ECT2 Silent p.N375N 0.44 TCGA-DU-6392-01 3 172482141 172482141 G A ECT2 Missense_Mutation p.R381H 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 3 172525559 172525559 G A ECT2 Splice_Site p.X749_splice 0.30 TCGA-DU-6392-01 3 173993227 173993228 - T NLGN1 Frame_Shift_Ins p.G259Wfs*19 0.30 TCGA-DU-6392-01 3 174814918 174814920 ATA TG NAALADL2 Frame_Shift_Del p.I128Cfs*14 0.14 TCGA-DU-6392-01 3 175165105 175165105 G A NAALADL2 Silent p.S393S 0.56 TCGA-DU-6392-01 3 176752029 176752029 C A TBL1XR1 Nonsense_Mutation p.G403* 0.13 TCGA-DU-6392-01 3 178543541 178543541 G A KCNMB2 Missense_Mutation p.M74I 0.07 tolerated(0.26) possibly_damaging(0.62) TCGA-DU-6392-01 3 178745246 178745246 T C ZMAT3 Missense_Mutation p.N208S 0.34 tolerated(0.23) benign(0.002) TCGA-DU-6392-01 3 178748770 178748770 C A ZMAT3 Missense_Mutation p.K96N 0.39 deleterious(0.01) probably_damaging(0.988) TCGA-DU-6392-01 3 178917576 178917576 G A PIK3CA Missense_Mutation p.V151M 0.08 tolerated(0.25) benign(0.098) TCGA-DU-6392-01 3 178960736 178960736 G A KCNMB3 Silent p.L266L 0.42 TCGA-DU-6392-01 3 179082095 179082095 G T MFN1 Missense_Mutation p.D183Y 0.27 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 3 179305840 179305840 G A ACTL6A 3'UTR 0.57 TCGA-DU-6392-01 3 179519707 179519707 G A PEX5L Missense_Mutation p.A597V 0.30 tolerated(0.21) probably_damaging(0.998) TCGA-DU-6392-01 3 179576924 179576924 G A PEX5L Missense_Mutation p.R250C 0.33 deleterious(0.03) benign(0.302) TCGA-DU-6392-01 3 180334613 180334613 C T CCDC39 Splice_Site p.X802_splice 0.33 TCGA-DU-6392-01 3 180337714 180337714 C T CCDC39 Silent p.L681L 0.32 TCGA-DU-6392-01 3 180377294 180377294 C T CCDC39 Silent p.E228E 0.38 TCGA-DU-6392-01 3 180652995 180652995 A G FXR1 Silent p.E58E 0.11 TCGA-DU-6392-01 3 180685891 180685891 C T FXR1 Silent p.D417D 0.43 TCGA-DU-6392-01 3 180705837 180705837 G A DNAJC19 Nonsense_Mutation p.Q35* 0.31 TCGA-DU-6392-01 3 181430973 181430973 C T SOX2 Silent p.S275S 0.13 TCGA-DU-6392-01 3 182547540 182547540 G T ATP11B Missense_Mutation p.Q105H 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 182585172 182585172 T C ATP11B Missense_Mutation p.I543T 0.11 tolerated(0.08) benign(0.08) TCGA-DU-6392-01 3 182683487 182683487 G A DCUN1D1 Nonsense_Mutation p.Q20* 0.39 TCGA-DU-6392-01 3 182853553 182853553 C T LAMP3 Missense_Mutation p.D357N 0.44 tolerated(1) benign(0.001) TCGA-DU-6392-01 3 182871577 182871577 G A LAMP3 Missense_Mutation p.P218S 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 3 182910809 182910809 G T MCF2L2 Silent p.A998A 0.10 TCGA-DU-6392-01 3 182987848 182987848 G A B3GNT5 Missense_Mutation p.V88I 0.34 tolerated(0.11) benign(0.01) TCGA-DU-6392-01 3 182988710 182988710 C A B3GNT5 Missense_Mutation p.A375D 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-6392-01 3 183013151 183013151 C T MCF2L2 Missense_Mutation p.A538T 0.36 deleterious(0.02) probably_damaging(0.99) TCGA-DU-6392-01 3 183209811 183209811 G A KLHL6 Silent p.C590C 0.40 TCGA-DU-6392-01 3 183368322 183368322 C T KLHL24 Missense_Mutation p.R60C 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 183381373 183381373 G T KLHL24 Nonsense_Mutation p.E350* 0.12 TCGA-DU-6392-01 3 183585821 183585821 G A PARL Silent p.C51C 0.44 TCGA-DU-6392-01 3 183643470 183643470 G A ABCC5 Missense_Mutation p.T1362I 0.30 deleterious(0.01) benign(0.197) TCGA-DU-6392-01 3 183660584 183660584 C T ABCC5 Missense_Mutation p.V1209I 0.37 deleterious(0.03) benign(0.152) TCGA-DU-6392-01 3 183677558 183677558 T C ABCC5 Silent p.G815G 0.40 TCGA-DU-6392-01 3 183683285 183683285 G A ABCC5 Missense_Mutation p.T613M 0.24 tolerated(0.22) benign(0.108) TCGA-DU-6392-01 3 183774017 183774017 A T HTR3C Missense_Mutation p.N111I 0.08 tolerated(0.16) benign(0.285) TCGA-DU-6392-01 3 183855492 183855492 C T EIF2B5 Silent p.L135L 0.38 TCGA-DU-6392-01 3 183882303 183882303 A G DVL3 Missense_Mutation p.Q126R 0.09 tolerated(1) benign(0) TCGA-DU-6392-01 3 183898424 183898424 G A AP2M1 Intron 0.35 TCGA-DU-6392-01 3 183905481 183905481 C T ABCF3 Silent p.A126A 0.41 TCGA-DU-6392-01 3 183960347 183960347 C T ALG3 Silent p.P424P 0.39 TCGA-DU-6392-01 3 183961690 183961690 A G ALG3 Missense_Mutation p.V274A 0.17 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 184026613 184026613 C A PSMD2 Missense_Mutation p.L888I 0.43 tolerated(1) benign(0.001) TCGA-DU-6392-01 3 184040467 184040467 C T EIF4G1 Missense_Mutation p.H589Y 0.46 deleterious(0.04) benign(0.05) TCGA-DU-6392-01 3 184070836 184070836 C T CLCN2 Missense_Mutation p.G710R 0.42 tolerated(0.59) benign(0.001) TCGA-DU-6392-01 3 184073305 184073305 C A CLCN2 Nonsense_Mutation p.E395* 0.18 TCGA-DU-6392-01 3 184086201 184086201 C T POLR2H 3'UTR 0.43 TCGA-DU-6392-01 3 184099582 184099582 G A CHRD Missense_Mutation p.R197H 0.52 tolerated(0.66) probably_damaging(0.915) TCGA-DU-6392-01 3 184106746 184106746 G T CHRD Missense_Mutation p.E925D 0.14 tolerated(0.57) benign(0.004) TCGA-DU-6392-01 3 18419766 18419766 T C SATB1 Missense_Mutation p.T491A 0.06 tolerated(0.24) benign(0.05) TCGA-DU-6392-01 3 184290522 184290522 C T EPHB3 Silent p.D138D 0.30 TCGA-DU-6392-01 3 184295234 184295234 C T EPHB3 Silent p.Y486Y 0.38 TCGA-DU-6392-01 3 184297592 184297592 G A EPHB3 Missense_Mutation p.S681N 0.51 deleterious(0.02) possibly_damaging(0.894) TCGA-DU-6392-01 3 18457582 18457582 G A SATB1 Silent p.Y144Y 0.34 TCGA-DU-6392-01 3 18462280 18462280 C T SATB1 Silent p.S60S 0.07 TCGA-DU-6392-01 3 184910836 184910836 G T EHHADH Nonsense_Mutation p.Y450* 0.18 TCGA-DU-6392-01 3 185234927 185234927 C A LIPH Missense_Mutation p.D304Y 0.33 deleterious(0) probably_damaging(0.951) TCGA-DU-6392-01 3 185236961 185236961 G A LIPH Silent p.G285G 0.10 TCGA-DU-6392-01 3 185251378 185251378 T C LIPH Silent p.G169G 0.15 TCGA-DU-6392-01 3 185304249 185304249 C T SENP2 Silent p.C16C 0.10 TCGA-DU-6392-01 3 185318632 185318632 G C SENP2 Silent p.L146L 0.06 TCGA-DU-6392-01 3 185327117 185327117 C A SENP2 Missense_Mutation p.P234H 0.10 deleterious(0) benign(0.376) TCGA-DU-6392-01 3 185330425 185330425 G A SENP2 Missense_Mutation p.C283Y 0.23 tolerated(0.79) benign(0.006) TCGA-DU-6392-01 3 185407364 185407364 A G IGF2BP2 Silent p.I152I 0.48 TCGA-DU-6392-01 3 185431176 185431176 G A C3orf65 5'UTR 0.35 TCGA-DU-6392-01 3 185643365 185643365 G A TRA2B Missense_Mutation p.R74C 0.09 deleterious_low_confidence(0.04) unknown(0) TCGA-DU-6392-01 3 186002489 186002489 C T DGKG Missense_Mutation p.R185H 0.27 tolerated(0.14) benign(0.009) TCGA-DU-6392-01 3 186457161 186457161 G A KNG1 Silent p.E361E 0.37 TCGA-DU-6392-01 3 186459812 186459812 G A KNG1 Missense_Mutation p.E543K 0.36 tolerated(0.06) benign(0.075) TCGA-DU-6392-01 3 186509558 186509558 C A RFC4 Missense_Mutation p.G253C 0.25 deleterious(0.02) benign(0.054) TCGA-DU-6392-01 3 186522387 186522387 G A RFC4 Missense_Mutation p.P39L 0.34 deleterious(0.01) possibly_damaging(0.803) TCGA-DU-6392-01 3 186522416 186522416 G A RFC4 Silent p.S29S 0.45 TCGA-DU-6392-01 3 186760527 186760527 C A ST6GAL1 Nonsense_Mutation p.C12* 0.13 TCGA-DU-6392-01 3 186943254 186943254 G A MASP1 Silent p.L533L 0.07 TCGA-DU-6392-01 3 186953538 186953538 G A MASP1 Silent p.Y707Y 0.11 TCGA-DU-6392-01 3 187446838 187446838 C A BCL6 Missense_Mutation p.R452M 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-DU-6392-01 3 188327202 188327202 C A LPP Missense_Mutation p.A228D 0.47 deleterious(0) possibly_damaging(0.878) TCGA-DU-6392-01 3 188592251 188592251 C T LPP Missense_Mutation p.A608V 0.37 tolerated(0.26) possibly_damaging(0.667) TCGA-DU-6392-01 3 189692442 189692442 C T LEPREL1 Missense_Mutation p.V453I 0.33 deleterious(0.04) benign(0.135) TCGA-DU-6392-01 3 190967869 190967869 G A OSTN Missense_Mutation p.D121N 0.40 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 192988582 192988582 C A HRASLS 3'UTR 0.31 TCGA-DU-6392-01 3 193081988 193081988 G A ATP13A5 Silent p.L49L 0.33 TCGA-DU-6392-01 3 193336716 193336716 T G OPA1 Missense_Mutation p.H205Q 0.09 tolerated(0.92) benign(0) TCGA-DU-6392-01 3 193355763 193355763 G T OPA1 Missense_Mutation p.S335I 0.12 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 193361390 193361390 C A OPA1 Missense_Mutation p.P466H 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 193363415 193363415 G A OPA1 Splice_Site p.X543_splice 0.30 TCGA-DU-6392-01 3 194117456 194117456 C T GP5 Missense_Mutation p.S519N 0.07 tolerated(0.17) benign(0.002) TCGA-DU-6392-01 3 194159674 194159674 T A ATP13A3 Missense_Mutation p.T580S 0.38 tolerated(0.15) benign(0.088) TCGA-DU-6392-01 3 194162084 194162084 A T ATP13A3 Missense_Mutation p.S556T 0.11 tolerated(0.17) possibly_damaging(0.475) TCGA-DU-6392-01 3 19492884 19492884 C A KCNH8 Missense_Mutation p.L605M 0.47 deleterious(0.03) probably_damaging(0.988) TCGA-DU-6392-01 3 19498417 19498417 C T KCNH8 Silent p.F661F 0.44 TCGA-DU-6392-01 3 195022730 195022730 G A ACAP2 Silent p.G430G 0.43 TCGA-DU-6392-01 3 195256664 195256664 G A PPP1R2 Missense_Mutation p.A54V 0.30 deleterious(0.03) possibly_damaging(0.545) TCGA-DU-6392-01 3 195300836 195300836 C T APOD Missense_Mutation p.G44R 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 195398092 195398092 C T SDHAP2 RNA 0.18 TCGA-DU-6392-01 3 195453068 195453068 G T MUC20 Nonsense_Mutation p.E532* 0.30 TCGA-DU-6392-01 3 195480103 195480103 T C MUC4 Splice_Site p.X5110_splice 0.28 TCGA-DU-6392-01 3 195487873 195487873 G T MUC4 Silent p.I4910I 0.34 TCGA-DU-6392-01 3 195515494 195515494 G A MUC4 Missense_Mutation p.S986F 0.41 unknown(0) TCGA-DU-6392-01 3 195515893 195515893 C T MUC4 Missense_Mutation p.S853N 0.14 unknown(0) TCGA-DU-6392-01 3 195516511 195516511 T C MUC4 Missense_Mutation p.Q647R 0.38 unknown(0) TCGA-DU-6392-01 3 195517305 195517305 A G MUC4 Silent p.S382S 0.39 TCGA-DU-6392-01 3 195518259 195518259 C T MUC4 Silent p.R64R 0.31 TCGA-DU-6392-01 3 195538617 195538617 A G MUC4 Silent p.H24H 0.07 TCGA-DU-6392-01 3 195925736 195925736 G T ZDHHC19 Missense_Mutation p.L233I 0.45 tolerated(0.09) benign(0.284) TCGA-DU-6392-01 3 195953912 195953912 G T SLC51A Missense_Mutation p.E70D 0.27 deleterious(0.03) possibly_damaging(0.853) TCGA-DU-6392-01 3 195959363 195959363 C T SLC51A Missense_Mutation p.S285L 0.38 deleterious(0.03) possibly_damaging(0.501) TCGA-DU-6392-01 3 196043050 196043050 G A TCTEX1D2 Silent p.L56L 0.47 TCGA-DU-6392-01 3 196050709 196050709 G T TM4SF19 Missense_Mutation p.F203L 0.32 tolerated(1) benign(0.083) TCGA-DU-6392-01 3 196051280 196051280 G A TM4SF19 Missense_Mutation p.A104V 0.40 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 3 196053893 196053893 G A TM4SF19 Missense_Mutation p.A71V 0.35 deleterious(0.03) probably_damaging(0.942) TCGA-DU-6392-01 3 196089299 196089299 G A UBXN7 Missense_Mutation p.P365L 0.38 tolerated(0.11) benign(0.003) TCGA-DU-6392-01 3 196386837 196386837 G A NRROS Missense_Mutation p.R108H 0.31 tolerated(0.76) benign(0.007) TCGA-DU-6392-01 3 196663927 196663927 G A NCBP2 Silent p.Y142Y 0.40 TCGA-DU-6392-01 3 196751283 196751283 G A MFI2 Silent p.G126G 0.31 TCGA-DU-6392-01 3 197249573 197249573 C T BDH1 Missense_Mutation p.S116N 0.36 tolerated(0.69) benign(0.006) TCGA-DU-6392-01 3 197402330 197402330 G T KIAA0226 Silent p.I901I 0.09 TCGA-DU-6392-01 3 197444953 197444953 A C KIAA0226 Silent p.G38G 0.26 TCGA-DU-6392-01 3 197444963 197444963 G A KIAA0226 Missense_Mutation p.T35M 0.52 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 197702952 197702952 G A LMLN Missense_Mutation p.R134H 0.60 deleterious(0.01) probably_damaging(0.988) TCGA-DU-6392-01 3 197762722 197762722 G T LMLN Missense_Mutation p.G596C 0.07 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 3 21462709 21462709 G A ZNF385D Silent p.Y395Y 0.25 TCGA-DU-6392-01 3 23848871 23848871 C T UBE2E1 Silent p.S37S 0.10 TCGA-DU-6392-01 3 24006638 24006638 G T NR1D2 Missense_Mutation p.K439N 0.09 deleterious(0) probably_damaging(0.912) TCGA-DU-6392-01 3 24164438 24164438 G A THRB Silent p.H441H 0.12 TCGA-DU-6392-01 3 25665884 25665884 T C TOP2B Missense_Mutation p.N795S 0.43 deleterious(0) probably_damaging(0.911) TCGA-DU-6392-01 3 25773856 25773856 G T NGLY1 Missense_Mutation p.S460Y 0.08 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 3 25773921 25773921 A G NGLY1 Silent p.I438I 0.09 TCGA-DU-6392-01 3 25835792 25835792 C A OXSM Missense_Mutation p.A396D 0.08 deleterious(0) probably_damaging(0.913) TCGA-DU-6392-01 3 26752039 26752039 A C LRRC3B 3'UTR 0.38 TCGA-DU-6392-01 3 27203867 27203867 G A NEK10 3'UTR 0.30 TCGA-DU-6392-01 3 27475580 27475580 T C SLC4A7 Missense_Mutation p.N193S 0.52 tolerated(0.51) benign(0.034) TCGA-DU-6392-01 3 28368334 28368334 G A AZI2 Missense_Mutation p.A252V 0.32 deleterious(0.02) benign(0.02) TCGA-DU-6392-01 3 29628682 29628682 G A RBMS3 Missense_Mutation p.A129T 0.33 deleterious(0) possibly_damaging(0.838) TCGA-DU-6392-01 3 30691945 30691945 C A TGFBR2 Missense_Mutation p.F174L 0.39 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 3 30713915 30713915 G A TGFBR2 Missense_Mutation p.A439T 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-DU-6392-01 3 3078900 3078900 C T CNTN4 Silent p.T660T 0.42 TCGA-DU-6392-01 3 30842578 30842578 A G GADL1 Silent p.D351D 0.37 TCGA-DU-6392-01 3 3095607 3095607 C T CNTN4 Silent p.S976S 0.34 TCGA-DU-6392-01 3 3111759 3111759 C T IL5RA 3'UTR 0.29 TCGA-DU-6392-01 3 3118281 3118281 C A IL5RA Missense_Mutation p.W342L 0.09 deleterious(0.02) possibly_damaging(0.656) TCGA-DU-6392-01 3 32030987 32030987 A G ZNF860 Missense_Mutation p.D139G 0.36 tolerated(0.1) benign(0.182) TCGA-DU-6392-01 3 32032013 32032013 C A ZNF860 Missense_Mutation p.P481H 0.41 deleterious(0.01) possibly_damaging(0.907) TCGA-DU-6392-01 3 3214594 3214594 C A CRBN Missense_Mutation p.R131S 0.26 tolerated(0.83) benign(0.01) TCGA-DU-6392-01 3 32586466 32586466 G A DYNC1LI1 Missense_Mutation p.T157I 0.47 tolerated(0.08) benign(0.125) TCGA-DU-6392-01 3 32754743 32754744 - T CNOT10 Frame_Shift_Ins p.L214Ffs*13 0.22 TCGA-DU-6392-01 3 32778978 32778978 T G CNOT10 Missense_Mutation p.L591V 0.10 deleterious(0) probably_damaging(0.93) TCGA-DU-6392-01 3 32927435 32927435 G A TRIM71 Missense_Mutation p.E344K 0.45 tolerated(0.17) benign(0.125) TCGA-DU-6392-01 3 32995243 32995243 G A CCR4 Missense_Mutation p.C110Y 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 33099698 33099698 G A GLB1 Missense_Mutation p.R206C 0.33 tolerated(0.09) benign(0.01) TCGA-DU-6392-01 3 33134502 33134502 G A TMPPE Nonsense_Mutation p.Q396* 0.14 TCGA-DU-6392-01 3 33135232 33135232 G A TMPPE Silent p.V152V 0.53 TCGA-DU-6392-01 3 33195514 33195514 C T SUSD5 Missense_Mutation p.A204T 0.36 tolerated(0.06) benign(0.018) TCGA-DU-6392-01 3 33255436 33255436 C T SUSD5 Missense_Mutation p.A92T 0.31 deleterious(0.02) probably_damaging(0.981) TCGA-DU-6392-01 3 33418801 33418801 C T FBXL2 Silent p.D275D 0.29 TCGA-DU-6392-01 3 33441687 33441687 A C UBP1 Missense_Mutation p.F392V 0.13 deleterious(0) benign(0.303) TCGA-DU-6392-01 3 33453088 33453088 G T UBP1 Silent p.T180T 0.08 TCGA-DU-6392-01 3 33592888 33592888 C A CLASP2 Splice_Site p.X1012_splice 0.14 TCGA-DU-6392-01 3 35770971 35770971 C T ARPP21 Missense_Mutation p.P434S 0.12 deleterious(0.03) benign(0.139) TCGA-DU-6392-01 3 36570431 36570431 T G STAC Missense_Mutation p.F355C 0.42 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 3 36763110 36763110 G A DCLK3 Missense_Mutation p.A498V 0.44 deleterious(0) probably_damaging(0.963) TCGA-DU-6392-01 3 36779337 36779337 G A DCLK3 Missense_Mutation p.H272Y 0.08 deleterious(0.01) benign(0.094) TCGA-DU-6392-01 3 36896952 36896952 G A TRANK1 Silent p.L1377L 0.35 TCGA-DU-6392-01 3 36897304 36897304 C A TRANK1 Missense_Mutation p.E1259D 0.08 tolerated(0.32) benign(0.084) TCGA-DU-6392-01 3 36898233 36898233 G T TRANK1 Missense_Mutation p.R950S 0.44 deleterious(0.05) probably_damaging(0.948) TCGA-DU-6392-01 3 37056036 37056036 G A MLH1 Splice_Site p.X264_splice 0.30 TCGA-DU-6392-01 3 37067299 37067299 C A MLH1 Missense_Mutation p.L404M 0.08 tolerated(0.3) benign(0.004) TCGA-DU-6392-01 3 37107390 37107390 T G LRRFIP2 Missense_Mutation p.D537A 0.34 deleterious(0.04) benign(0.396) TCGA-DU-6392-01 3 37458932 37458932 C T C3orf35 Nonsense_Mutation p.Q59* 0.40 TCGA-DU-6392-01 3 38022346 38022346 C A CTDSPL Silent p.L273L 0.27 TCGA-DU-6392-01 3 38047959 38047959 T C VILL Missense_Mutation p.L742P 0.08 tolerated(0.07) benign(0.053) TCGA-DU-6392-01 3 38049554 38049554 C A PLCD1 Missense_Mutation p.K733N 0.41 tolerated(0.09) benign(0.122) TCGA-DU-6392-01 3 38049632 38049632 C T PLCD1 Silent p.T707T 0.38 TCGA-DU-6392-01 3 38051485 38051485 G A PLCD1 Silent p.R420R 0.19 TCGA-DU-6392-01 3 38105394 38105394 T C DLEC1 Missense_Mutation p.I386T 0.08 deleterious(0.01) benign(0.373) TCGA-DU-6392-01 3 38158080 38158080 G T DLEC1 Missense_Mutation p.E1331D 0.09 tolerated(0.1) benign(0.017) TCGA-DU-6392-01 3 38164583 38164583 C T ACAA1 Silent p.G410G 0.36 TCGA-DU-6392-01 3 38175457 38175457 G A ACAA1 Silent p.I103I 0.40 TCGA-DU-6392-01 3 38307385 38307385 G T SLC22A13 Missense_Mutation p.G12C 0.13 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 38347805 38347805 C A SLC22A14 Silent p.P96P 0.09 TCGA-DU-6392-01 3 38537902 38537902 G A EXOG Missense_Mutation p.R15H 0.48 tolerated(0.06) possibly_damaging(0.522) TCGA-DU-6392-01 3 38618220 38618220 G A SCN5A Missense_Mutation p.A1148V 0.50 tolerated(0.29) benign(0.004) TCGA-DU-6392-01 3 38739556 38739556 C T SCN10A Missense_Mutation p.A1719T 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 38739839 38739839 G A SCN10A Silent p.F1624F 0.09 TCGA-DU-6392-01 3 38739966 38739966 C T SCN10A Missense_Mutation p.R1582H 0.42 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 3 38766687 38766687 G A SCN10A Missense_Mutation p.S1069F 0.36 tolerated(0.15) benign(0.192) TCGA-DU-6392-01 3 38781028 38781028 G T SCN10A Missense_Mutation p.S753Y 0.40 deleterious(0) possibly_damaging(0.857) TCGA-DU-6392-01 3 38793723 38793723 G A SCN10A Missense_Mutation p.A581V 0.26 tolerated(0.54) benign(0.001) TCGA-DU-6392-01 3 38793748 38793748 G A SCN10A Missense_Mutation p.P573S 0.30 tolerated(0.11) benign(0.022) TCGA-DU-6392-01 3 38835327 38835327 C A SCN10A Missense_Mutation p.A59S 0.43 deleterious(0) probably_damaging(0.961) TCGA-DU-6392-01 3 3886579 3886579 C T LRRN1 Missense_Mutation p.A85V 0.15 tolerated(0.27) benign(0.017) TCGA-DU-6392-01 3 3887498 3887498 C T LRRN1 Silent p.F391F 0.08 TCGA-DU-6392-01 3 3888446 3888446 C T LRRN1 Silent p.V707V 0.46 TCGA-DU-6392-01 3 3888474 3888474 T C LRRN1 Nonstop_Mutation p.*717Qext*52 0.43 TCGA-DU-6392-01 3 39142345 39142345 G A GORASP1 Silent p.I153I 0.34 TCGA-DU-6392-01 3 39226380 39226380 C A XIRP1 Missense_Mutation p.E1519D 0.46 tolerated(0.1) benign(0.339) TCGA-DU-6392-01 3 39227239 39227239 C T XIRP1 Missense_Mutation p.R1233H 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-DU-6392-01 3 39227602 39227602 C T XIRP1 Missense_Mutation p.R1112Q 0.34 tolerated(0.07) possibly_damaging(0.482) TCGA-DU-6392-01 3 39229155 39229155 G T XIRP1 Silent p.I594I 0.48 TCGA-DU-6392-01 3 39306959 39306959 C A CX3CR1 Missense_Mutation p.D380Y 0.35 deleterious(0) possibly_damaging(0.893) TCGA-DU-6392-01 3 39374922 39374922 T A CCR8 3'UTR 0.24 TCGA-DU-6392-01 3 40192659 40192659 G A MYRIP Silent p.A151A 0.50 TCGA-DU-6392-01 3 40457483 40457483 C T ENTPD3 Silent p.Y250Y 0.36 TCGA-DU-6392-01 3 40574286 40574286 C A ZNF621 Missense_Mutation p.P342H 0.14 tolerated(0.13) benign(0.417) TCGA-DU-6392-01 3 42305084 42305084 T C CCK Silent p.V13V 0.50 TCGA-DU-6392-01 3 42577643 42577643 A G VIPR1 Missense_Mutation p.N415S 0.33 tolerated(0.11) benign(0.001) TCGA-DU-6392-01 3 42674295 42674295 A G NKTR Silent p.K251K 0.18 TCGA-DU-6392-01 3 42678574 42678574 C A NKTR Missense_Mutation p.L460I 0.39 tolerated_low_confidence(0.62) unknown(0) TCGA-DU-6392-01 3 42678608 42678608 C T NKTR Missense_Mutation p.S471F 0.35 tolerated_low_confidence(0.26) unknown(0) TCGA-DU-6392-01 3 42680894 42680894 G A NKTR Missense_Mutation p.G1233E 0.49 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-6392-01 3 42701050 42701050 G A ZBTB47 Silent p.G401G 0.31 TCGA-DU-6392-01 3 42727515 42727515 C T KLHL40 Silent p.A135A 0.43 TCGA-DU-6392-01 3 42728038 42728038 C A KLHL40 Missense_Mutation p.L310M 0.35 tolerated(0.09) benign(0.064) TCGA-DU-6392-01 3 42754752 42754752 C T CCDC13 Missense_Mutation p.R592Q 0.10 tolerated(0.23) probably_damaging(0.977) TCGA-DU-6392-01 3 42772013 42772013 G T CCDC13 Missense_Mutation p.A555D 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 42906025 42906025 G A ACKR2 Missense_Mutation p.A11T 0.39 tolerated(1) benign(0.001) TCGA-DU-6392-01 3 42955844 42955844 A C ZNF662 Missense_Mutation p.E119D 0.47 tolerated(0.16) benign(0.205) TCGA-DU-6392-01 3 42956626 42956626 A G ZNF662 Missense_Mutation p.H380R 0.49 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 3 42956680 42956680 A C ZNF662 Missense_Mutation p.K398T 0.12 deleterious(0.02) benign(0.106) TCGA-DU-6392-01 3 43121702 43121702 G T POMGNT2 Missense_Mutation p.P408T 0.24 deleterious(0.02) benign(0.146) TCGA-DU-6392-01 3 43389157 43389157 G A SNRK Missense_Mutation p.R469Q 0.11 tolerated(0.08) possibly_damaging(0.476) TCGA-DU-6392-01 3 43389476 43389476 C T SNRK Silent p.G575G 0.08 TCGA-DU-6392-01 3 4355208 4355208 T G SETMAR Missense_Mutation p.D261E 0.26 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-DU-6392-01 3 44441973 44441973 C A TCAIM Missense_Mutation p.L338I 0.10 tolerated(0.75) benign(0.002) TCGA-DU-6392-01 3 44442806 44442806 G T TCAIM Missense_Mutation p.E410D 0.41 tolerated(0.29) benign(0.002) TCGA-DU-6392-01 3 44488739 44488739 A G ZNF445 Silent p.H808H 0.11 TCGA-DU-6392-01 3 44489264 44489264 G T ZNF445 Silent p.T633T 0.06 TCGA-DU-6392-01 3 44496714 44496714 C T ZNF445 Missense_Mutation p.E110K 0.28 deleterious(0) possibly_damaging(0.621) TCGA-DU-6392-01 3 44541424 44541424 C T ZNF852 Missense_Mutation p.R282Q 0.55 tolerated(0.8) benign(0.009) TCGA-DU-6392-01 3 44598499 44598499 G A ZKSCAN7 5'UTR 0.35 TCGA-DU-6392-01 3 44611871 44611871 C A ZKSCAN7 Silent p.T423T 0.30 TCGA-DU-6392-01 3 44612794 44612794 G A ZKSCAN7 Missense_Mutation p.R731H 0.41 deleterious(0.04) benign(0.014) TCGA-DU-6392-01 3 44635693 44635693 G T ZNF660 Missense_Mutation p.R3I 0.10 deleterious_low_confidence(0) benign(0.07) TCGA-DU-6392-01 3 44692454 44692454 C A ZNF35 5'UTR 0.30 TCGA-DU-6392-01 3 44701410 44701410 C T ZNF35 Nonsense_Mutation p.R519* 0.45 TCGA-DU-6392-01 3 447371 447371 G T CHL1 Missense_Mutation p.A1218S 0.49 deleterious(0.04) probably_damaging(0.999) TCGA-DU-6392-01 3 44763330 44763330 C T ZNF502 Missense_Mutation p.H341Y 0.27 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 44893799 44893799 C T KIF15 Nonsense_Mutation p.R1358* 0.27 TCGA-DU-6392-01 3 45000730 45000730 G A ZDHHC3 Silent p.L67L 0.11 TCGA-DU-6392-01 3 45132744 45132744 G A CDCP1 Silent p.V638V 0.35 TCGA-DU-6392-01 3 45134805 45134805 G A CDCP1 Nonsense_Mutation p.Q531* 0.11 TCGA-DU-6392-01 3 45152200 45152200 G A CDCP1 Silent p.S263S 0.34 TCGA-DU-6392-01 3 45160089 45160089 C T CDCP1 Missense_Mutation p.R36Q 0.27 tolerated(0.78) benign(0.003) TCGA-DU-6392-01 3 45441826 45441826 C T LARS2 Silent p.S108S 0.45 TCGA-DU-6392-01 3 45636938 45636938 G A LIMD1 Silent p.K189K 0.10 TCGA-DU-6392-01 3 45714235 45714235 C A LIMD1 Silent p.I565I 0.09 TCGA-DU-6392-01 3 45801444 45801444 C T SLC6A20 Missense_Mutation p.V512I 0.35 tolerated(0.86) benign(0.044) TCGA-DU-6392-01 3 45817434 45817434 C T SLC6A20 Missense_Mutation p.G134D 0.15 tolerated(0.06) benign(0.309) TCGA-DU-6392-01 3 45870074 45870074 C A LZTFL1 Nonsense_Mutation p.E212* 0.34 TCGA-DU-6392-01 3 45936404 45936404 G A CCR9 5'UTR 0.37 TCGA-DU-6392-01 3 45943196 45943196 G A CCR9 Missense_Mutation p.A306T 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 3 45963180 45963181 - A FYCO1 3'UTR 0.35 TCGA-DU-6392-01 3 45965194 45965194 G A FYCO1 Missense_Mutation p.R1439C 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 46008666 46008666 C T FYCO1 Silent p.Q720Q 0.08 TCGA-DU-6392-01 3 46592989 46592989 C A LRRC2 Missense_Mutation p.E31D 0.30 deleterious(0.01) possibly_damaging(0.708) TCGA-DU-6392-01 3 46718343 46718343 C T ALS2CL Missense_Mutation p.E643K 0.13 tolerated(0.14) benign(0.021) TCGA-DU-6392-01 3 46722850 46722850 C T ALS2CL Missense_Mutation p.R441Q 0.35 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 3 47037063 47037063 C T NBEAL2 Missense_Mutation p.P613L 0.38 tolerated(0.27) benign(0.063) TCGA-DU-6392-01 3 47041884 47041884 G A NBEAL2 Missense_Mutation p.S1432N 0.09 tolerated(0.14) benign(0.254) TCGA-DU-6392-01 3 47043273 47043273 G A NBEAL2 Missense_Mutation p.G1580D 0.42 deleterious(0.01) probably_damaging(0.98) TCGA-DU-6392-01 3 47044503 47044503 G A NBEAL2 Missense_Mutation p.R1839H 0.39 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 3 47050155 47050155 A G NBEAL2 Missense_Mutation p.N2675S 0.39 tolerated(0.16) benign(0.007) TCGA-DU-6392-01 3 4716021 4716021 G A ITPR1 Silent p.T849T 0.25 TCGA-DU-6392-01 3 47163376 47163377 - T SETD2 Frame_Shift_Ins p.S917Kfs*18 0.30 TCGA-DU-6392-01 3 47163775 47163775 G T SETD2 Missense_Mutation p.S784Y 0.11 deleterious_low_confidence(0.02) benign(0.391) TCGA-DU-6392-01 3 47307308 47307308 C T KIF9 Silent p.E276E 0.27 TCGA-DU-6392-01 3 47450427 47450427 T C PTPN23 Missense_Mutation p.W498R 0.35 unknown(0) TCGA-DU-6392-01 3 47459175 47459175 C T SCAP Silent p.P863P 0.18 TCGA-DU-6392-01 3 47459213 47459213 T C SCAP Missense_Mutation p.S851G 0.42 tolerated(0.35) benign(0.002) TCGA-DU-6392-01 3 47460252 47460252 G A SCAP Silent p.D674D 0.31 TCGA-DU-6392-01 3 47460853 47460853 C T SCAP Silent p.T635T 0.27 TCGA-DU-6392-01 3 47614279 47614279 C T CSPG5 Missense_Mutation p.G427S 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 47618449 47618449 C T CSPG5 Missense_Mutation p.G356D 0.09 deleterious(0.01) benign(0.038) TCGA-DU-6392-01 3 47629740 47629740 G T SMARCC1 Missense_Mutation p.P1093T 0.35 tolerated_low_confidence(0.06) unknown(0) TCGA-DU-6392-01 3 47663813 47663813 C A SMARCC1 Nonsense_Mutation p.E889* 0.39 TCGA-DU-6392-01 3 47703916 47703916 C T SMARCC1 Missense_Mutation p.S689N 0.26 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 3 47823105 47823105 C T SMARCC1 Silent p.K61K 0.25 TCGA-DU-6392-01 3 47882639 47882639 G T DHX30 Missense_Mutation p.Q213H 0.23 deleterious(0.04) benign(0.071) TCGA-DU-6392-01 3 47888408 47888408 T C DHX30 Missense_Mutation p.Y616H 0.48 tolerated(0.45) benign(0.145) TCGA-DU-6392-01 3 47888776 47888776 G A DHX30 Missense_Mutation p.C648Y 0.34 deleterious(0.05) benign(0.002) TCGA-DU-6392-01 3 48215880 48215880 C T CDC25A Missense_Mutation p.R275K 0.08 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 3 48310236 48310236 G T ZNF589 Missense_Mutation p.R352I 0.35 deleterious(0.02) benign(0.038) TCGA-DU-6392-01 3 48459659 48459659 C T PLXNB1 Missense_Mutation p.E1055K 0.46 tolerated(0.49) probably_damaging(0.991) TCGA-DU-6392-01 3 48465435 48465435 C A PLXNB1 Missense_Mutation p.A196S 0.40 tolerated(0.63) benign(0.012) TCGA-DU-6392-01 3 48498762 48498762 C A ATRIP Missense_Mutation p.L259I 0.12 tolerated(0.18) benign(0.06) TCGA-DU-6392-01 3 48501694 48501694 C A ATRIP Missense_Mutation p.P414H 0.07 deleterious(0.01) probably_damaging(0.987) TCGA-DU-6392-01 3 48508920 48508920 C T TREX1 Missense_Mutation p.A344V 0.47 deleterious_low_confidence(0.04) benign(0.119) TCGA-DU-6392-01 3 4859858 4859858 G A ITPR1 Missense_Mutation p.V2639I 0.48 deleterious(0.01) benign(0.136) TCGA-DU-6392-01 3 48605530 48605530 C T COL7A1 Missense_Mutation p.G2623D 0.31 probably_damaging(1) TCGA-DU-6392-01 3 48608556 48608556 G T COL7A1 Missense_Mutation p.P2381H 0.22 probably_damaging(0.995) TCGA-DU-6392-01 3 48609476 48609476 A G COL7A1 Silent p.G2342G 0.24 TCGA-DU-6392-01 3 48619141 48619141 G A COL7A1 Missense_Mutation p.R1574W 0.07 unknown(0) TCGA-DU-6392-01 3 48624626 48624626 G T COL7A1 Missense_Mutation p.P1046T 0.25 unknown(0) TCGA-DU-6392-01 3 48627942 48627942 C T COL7A1 Missense_Mutation p.G619E 0.35 unknown(0) TCGA-DU-6392-01 3 48629795 48629795 C T COL7A1 Missense_Mutation p.R361Q 0.48 unknown(0) TCGA-DU-6392-01 3 48642153 48642153 G T UQCRC1 Missense_Mutation p.L120I 0.44 deleterious(0) probably_damaging(0.93) TCGA-DU-6392-01 3 48659143 48659143 G A TMEM89 Missense_Mutation p.T16M 0.30 tolerated_low_confidence(1) unknown(0) TCGA-DU-6392-01 3 48669381 48669381 C T SLC26A6 Missense_Mutation p.V228I 0.36 tolerated(0.3) benign(0.032) TCGA-DU-6392-01 3 48685340 48685340 C T CELSR3 Missense_Mutation p.D2355N 0.36 tolerated(0.53) benign(0.05) TCGA-DU-6392-01 3 48689349 48689349 G A CELSR3 Missense_Mutation p.R1962W 0.36 tolerated(0.09) benign(0.339) TCGA-DU-6392-01 3 48689388 48689388 C T CELSR3 Missense_Mutation p.A1949T 0.09 tolerated(0.06) benign(0.001) TCGA-DU-6392-01 3 48694535 48694535 G A CELSR3 Missense_Mutation p.A1332V 0.42 tolerated(0.22) probably_damaging(0.999) TCGA-DU-6392-01 3 48697457 48697457 G A CELSR3 Missense_Mutation p.R871W 0.41 deleterious(0.01) benign(0.003) TCGA-DU-6392-01 3 48732511 48732511 G A IP6K2 Intron 0.09 TCGA-DU-6392-01 3 48896032 48896032 C A SLC25A20 Missense_Mutation p.D251Y 0.35 deleterious(0) probably_damaging(0.947) TCGA-DU-6392-01 3 49004629 49004629 T C ARIH2 Silent p.S153S 0.10 TCGA-DU-6392-01 3 49020740 49020740 G A ARIH2 3'UTR 0.18 TCGA-DU-6392-01 3 49043537 49043537 G A P4HTM Missense_Mutation p.R463K 0.39 tolerated(0.93) benign(0.259) TCGA-DU-6392-01 3 49044189 49044189 T A P4HTM Missense_Mutation p.I514N 0.45 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 3 49049221 49049221 C A WDR6 Missense_Mutation p.A115D 0.11 deleterious(0) possibly_damaging(0.902) TCGA-DU-6392-01 3 49050759 49050759 G A WDR6 Missense_Mutation p.D628N 0.36 tolerated(0.45) benign(0.002) TCGA-DU-6392-01 3 49052884 49052884 C T WDR6 3'UTR 0.50 TCGA-DU-6392-01 3 49054273 49054273 A G DALRD3 Missense_Mutation p.L312P 0.09 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 3 49059860 49059860 G A NDUFAF3 Silent p.E53E 0.27 TCGA-DU-6392-01 3 49141388 49141388 G A QARS Missense_Mutation p.R95W 0.33 deleterious(0.02) possibly_damaging(0.832) TCGA-DU-6392-01 3 49153548 49153548 C T USP19 Missense_Mutation p.R468H 0.51 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 3 49154763 49154763 G A USP19 Missense_Mutation p.P213L 0.56 tolerated_low_confidence(0.14) benign(0.001) TCGA-DU-6392-01 3 49155466 49155466 A G USP19 Missense_Mutation p.I71T 0.34 tolerated_low_confidence(0.42) benign(0) TCGA-DU-6392-01 3 49159017 49159017 G A LAMB2 Silent p.R1703R 0.12 TCGA-DU-6392-01 3 49169107 49169107 C T LAMB2 Missense_Mutation p.R170H 0.35 tolerated(0.13) benign(0.081) TCGA-DU-6392-01 3 49210220 49210220 C T KLHDC8B Silent p.G6G 0.41 TCGA-DU-6392-01 3 49365228 49365228 T G USP4 Missense_Mutation p.K84T 0.17 deleterious(0) possibly_damaging(0.897) TCGA-DU-6392-01 3 49394804 49394804 G A GPX1 3'UTR 0.37 TCGA-DU-6392-01 3 49399938 49399938 C T RHOA Silent p.K133K 0.34 TCGA-DU-6392-01 3 49462403 49462403 G A NICN1 Silent p.S193S 0.25 TCGA-DU-6392-01 3 49466705 49466705 G A NICN1 5'UTR 0.29 TCGA-DU-6392-01 3 49547907 49547907 G A DAG1 5'UTR 0.38 TCGA-DU-6392-01 3 49689793 49689793 A C BSN Missense_Mutation p.E935A 0.30 unknown(0) TCGA-DU-6392-01 3 49689802 49689802 G A BSN Missense_Mutation p.S938N 0.45 unknown(0) TCGA-DU-6392-01 3 49693336 49693336 G A BSN Missense_Mutation p.G2116D 0.23 unknown(0) TCGA-DU-6392-01 3 49694644 49694644 G A BSN Missense_Mutation p.G2552D 0.30 unknown(0) TCGA-DU-6392-01 3 49694787 49694787 C T BSN Missense_Mutation p.R2600W 0.59 unknown(0) TCGA-DU-6392-01 3 49695448 49695448 C A BSN Missense_Mutation p.A2820D 0.41 unknown(0) TCGA-DU-6392-01 3 49699822 49699822 G A BSN Missense_Mutation p.R3515H 0.32 unknown(0) TCGA-DU-6392-01 3 49720671 49720671 C A APEH Missense_Mutation p.L699I 0.10 deleterious(0.03) benign(0.159) TCGA-DU-6392-01 3 49725255 49725255 G A MST1 Missense_Mutation p.P57L 0.38 tolerated(0.35) benign(0.059) TCGA-DU-6392-01 3 49751542 49751542 G A RNF123 Missense_Mutation p.R982H 0.49 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 3 49760894 49760894 G A GMPPB Silent p.D47D 0.33 TCGA-DU-6392-01 3 49785313 49785313 C T IP6K1 Missense_Mutation p.R54Q 0.18 tolerated(0.62) probably_damaging(0.996) TCGA-DU-6392-01 3 49847552 49847552 G A UBA7 Silent p.G566G 0.18 TCGA-DU-6392-01 3 49847823 49847823 G A UBA7 Silent p.G502G 0.30 TCGA-DU-6392-01 3 49848098 49848098 G A UBA7 Missense_Mutation p.A440V 0.32 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 3 49849917 49849917 T A UBA7 Silent p.G206G 0.09 TCGA-DU-6392-01 3 49869458 49869458 A G TRAIP Missense_Mutation p.F310L 0.09 tolerated(0.67) benign(0.001) TCGA-DU-6392-01 3 49896835 49896835 G A CAMKV Silent p.G474G 0.32 TCGA-DU-6392-01 3 49898709 49898709 G A CAMKV Missense_Mutation p.R156W 0.28 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 49932597 49932597 C T MST1R Intron 0.08 TCGA-DU-6392-01 3 49935547 49935547 G A MST1R Missense_Mutation p.T606I 0.36 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 3 49940860 49940860 G A MST1R Silent p.Y61Y 0.15 TCGA-DU-6392-01 3 50005101 50005101 G A RBM6 Silent p.P81P 0.45 TCGA-DU-6392-01 3 50005258 50005258 G T RBM6 Missense_Mutation p.D134Y 0.34 deleterious(0) probably_damaging(0.945) TCGA-DU-6392-01 3 50197044 50197044 G A SEMA3F 5'UTR 0.37 TCGA-DU-6392-01 3 50220121 50220121 C T SEMA3F Missense_Mutation p.R270C 0.40 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 3 5024755 5024755 G A BHLHE40 Missense_Mutation p.S206N 0.33 tolerated(0.18) benign(0.001) TCGA-DU-6392-01 3 50252882 50252882 G T SLC38A3 RNA 0.09 TCGA-DU-6392-01 3 50253068 50253068 G T SLC38A3 Intron 0.29 TCGA-DU-6392-01 3 5025425 5025426 - A BHLHE40 3'UTR 0.22 TCGA-DU-6392-01 3 50293708 50293708 G A GNAI2 Silent p.T183T 0.32 TCGA-DU-6392-01 3 50294242 50294242 C A GNAI2 Silent p.A227A 0.21 TCGA-DU-6392-01 3 50324117 50324117 G A LSMEM2 Missense_Mutation p.R62H 0.43 tolerated(0.35) benign(0.004) TCGA-DU-6392-01 3 50368872 50368872 G A RASSF1 Missense_Mutation p.R261W 0.42 deleterious(0) possibly_damaging(0.749) TCGA-DU-6392-01 3 50379074 50379074 C T ZMYND10 Missense_Mutation p.R393H 0.35 tolerated(0.07) benign(0.005) TCGA-DU-6392-01 3 50381223 50381223 G T ZMYND10 Missense_Mutation p.P87H 0.15 deleterious(0.01) possibly_damaging(0.628) TCGA-DU-6392-01 3 50385824 50385824 G T NPRL2 Nonsense_Mutation p.C246* 0.09 TCGA-DU-6392-01 3 50391089 50391089 G T CYB561D2 Missense_Mutation p.A195S 0.34 tolerated(0.18) benign(0.003) TCGA-DU-6392-01 3 50405102 50405102 G A CACNA2D2 Silent p.D763D 0.31 TCGA-DU-6392-01 3 50417156 50417156 C T CACNA2D2 Silent p.S331S 0.29 TCGA-DU-6392-01 3 50677823 50677823 G A MAPKAPK3 Silent p.R82R 0.10 TCGA-DU-6392-01 3 50683654 50683654 A G MAPKAPK3 Missense_Mutation p.Y263C 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 51127792 51127792 C T DOCK3 Silent p.D241D 0.32 TCGA-DU-6392-01 3 51263172 51263172 T C DOCK3 Missense_Mutation p.Y449H 0.42 tolerated(0.21) benign(0.133) TCGA-DU-6392-01 3 51264830 51264830 C T DOCK3 Silent p.D498D 0.37 TCGA-DU-6392-01 3 51395449 51395449 C T DOCK3 Missense_Mutation p.R1609W 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 51667724 51667724 C T RAD54L2 Silent p.I319I 0.38 TCGA-DU-6392-01 3 51697257 51697257 C A RAD54L2 Missense_Mutation p.L1409I 0.09 deleterious_low_confidence(0.05) possibly_damaging(0.471) TCGA-DU-6392-01 3 51747018 51747018 T G GRM2 Missense_Mutation p.F327C 0.13 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 51749164 51749164 C A GRM2 Missense_Mutation p.L459M 0.42 deleterious(0.02) possibly_damaging(0.637) TCGA-DU-6392-01 3 51749692 51749692 C T GRM2 Missense_Mutation p.R635W 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 51937000 51937000 C T IQCF1 Splice_Site p.X36_splice 0.10 TCGA-DU-6392-01 3 51979069 51979069 C T PARP3 Silent p.F237F 0.25 TCGA-DU-6392-01 3 51993277 51993277 G A PCBP4 Missense_Mutation p.A223V 0.27 tolerated(0.17) benign(0.022) TCGA-DU-6392-01 3 52003666 52003666 G A ABHD14B Intron 0.10 TCGA-DU-6392-01 3 52028026 52028026 C T RPL29 Silent p.K73K 0.42 TCGA-DU-6392-01 3 52029074 52029074 T C RPL29 Missense_Mutation p.Y29C 0.07 deleterious(0.04) benign(0.179) TCGA-DU-6392-01 3 52084922 52084922 G A DUSP7 Missense_Mutation p.P390L 0.42 deleterious(0.01) probably_damaging(0.956) TCGA-DU-6392-01 3 52088116 52088116 G A DUSP7 Silent p.D264D 0.40 TCGA-DU-6392-01 3 52088295 52088295 G A DUSP7 Silent p.L205L 0.42 TCGA-DU-6392-01 3 52109887 52109887 A G POC1A 3'UTR 0.34 TCGA-DU-6392-01 3 5220422 5220422 C T ARL8B 3'UTR 0.33 TCGA-DU-6392-01 3 52238733 52238733 G A ALAS1 Missense_Mutation p.R201H 0.35 tolerated(0.24) benign(0) TCGA-DU-6392-01 3 52256729 52256729 G T TLR9 Missense_Mutation p.L689I 0.09 deleterious(0.01) probably_damaging(0.951) TCGA-DU-6392-01 3 52398868 52398868 C T DNAH1 Missense_Mutation p.A1784V 0.31 probably_damaging(0.998) TCGA-DU-6392-01 3 52398885 52398885 G A DNAH1 Missense_Mutation p.V1790M 0.31 possibly_damaging(0.522) TCGA-DU-6392-01 3 52409983 52409983 G A DNAH1 Missense_Mutation p.G2391E 0.36 benign(0.411) TCGA-DU-6392-01 3 52417476 52417476 G A DNAH1 Silent p.A2672A 0.25 TCGA-DU-6392-01 3 52427409 52427409 A G DNAH1 Missense_Mutation p.N3512D 0.38 possibly_damaging(0.847) TCGA-DU-6392-01 3 52434366 52434366 T C DNAH1 Silent p.S4234S 0.43 TCGA-DU-6392-01 3 52492834 52492834 G A NISCH Missense_Mutation p.A112T 0.43 deleterious(0.04) benign(0.384) TCGA-DU-6392-01 3 52521900 52521900 G A NISCH Missense_Mutation p.A798T 0.58 tolerated(0.29) benign(0.002) TCGA-DU-6392-01 3 52522138 52522138 G A NISCH Missense_Mutation p.G877D 0.38 tolerated(0.17) benign(0.032) TCGA-DU-6392-01 3 52556111 52556111 G A STAB1 Silent p.Q2110Q 0.42 TCGA-DU-6392-01 3 52557070 52557070 G A STAB1 Missense_Mutation p.V2314M 0.46 deleterious(0.01) probably_damaging(0.994) TCGA-DU-6392-01 3 52598163 52598163 G A PBRM1 Missense_Mutation p.R1235C 0.38 deleterious(0.04) possibly_damaging(0.835) TCGA-DU-6392-01 3 52637555 52637555 G A PBRM1 Nonsense_Mutation p.R921* 0.43 TCGA-DU-6392-01 3 52643916 52643916 C A PBRM1 Missense_Mutation p.Q660H 0.28 tolerated(0.11) possibly_damaging(0.629) TCGA-DU-6392-01 3 52668759 52668760 - A PBRM1 Frame_Shift_Ins p.Y387Lfs*5 0.36 TCGA-DU-6392-01 3 52678781 52678781 A C PBRM1 Missense_Mutation p.F280V 0.42 tolerated(0.31) possibly_damaging(0.822) TCGA-DU-6392-01 3 52724697 52724697 A C GNL3 Missense_Mutation p.K211Q 0.09 tolerated(0.35) benign(0.196) TCGA-DU-6392-01 3 52812378 52812378 G A ITIH1 Missense_Mutation p.R54Q 0.34 tolerated(0.25) benign(0.023) TCGA-DU-6392-01 3 52860641 52860641 C A ITIH4 Missense_Mutation p.Q182H 0.49 deleterious(0) benign(0.167) TCGA-DU-6392-01 3 52941704 52941704 G T SFMBT1 Missense_Mutation p.P651H 0.12 deleterious(0) benign(0.024) TCGA-DU-6392-01 3 52946575 52946575 C T SFMBT1 Missense_Mutation p.C570Y 0.33 tolerated(0.25) benign(0.004) TCGA-DU-6392-01 3 52968829 52968829 G A SFMBT1 Silent p.G151G 0.54 TCGA-DU-6392-01 3 53262328 53262328 A G TKT Silent p.Y489Y 0.42 TCGA-DU-6392-01 3 53274267 53274267 C A TKT Missense_Mutation p.S146I 0.34 deleterious(0) benign(0.06) TCGA-DU-6392-01 3 53756346 53756346 G A CACNA1D Missense_Mutation p.R524H 0.35 tolerated(0.52) benign(0.114) TCGA-DU-6392-01 3 53835325 53835325 G A CACNA1D Missense_Mutation p.A1781T 0.39 tolerated_low_confidence(0.18) benign(0.131) TCGA-DU-6392-01 3 53839116 53839116 G A CACNA1D Missense_Mutation p.V1918I 0.41 tolerated_low_confidence(1) benign(0.001) TCGA-DU-6392-01 3 53845162 53845162 G A CACNA1D Missense_Mutation p.G2092E 0.32 deleterious_low_confidence(0.01) probably_damaging(0.925) TCGA-DU-6392-01 3 53911754 53911754 G A ACTR8 Nonsense_Mutation p.R144* 0.43 TCGA-DU-6392-01 3 56114999 56114999 C A ERC2 Missense_Mutation p.R496I 0.37 deleterious(0) probably_damaging(0.965) TCGA-DU-6392-01 3 56183009 56183009 G A ERC2 Missense_Mutation p.T434I 0.42 tolerated(0.17) benign(0.005) TCGA-DU-6392-01 3 56601046 56601046 T C CCDC66 Missense_Mutation p.L260S 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 3 56651180 56651180 T A CCDC66 Missense_Mutation p.H628Q 0.32 tolerated(0.31) benign(0.02) TCGA-DU-6392-01 3 56656988 56656989 - T FAM208A 3'UTR 0.61 TCGA-DU-6392-01 3 56661162 56661162 T G FAM208A Missense_Mutation p.N1348H 0.22 tolerated(0.14) benign(0.005) TCGA-DU-6392-01 3 56667283 56667283 G T FAM208A Missense_Mutation p.P1179H 0.08 deleterious(0) benign(0.141) TCGA-DU-6392-01 3 56675539 56675539 G A FAM208A Silent p.T819T 0.25 TCGA-DU-6392-01 3 57132155 57132155 G A IL17RD Nonsense_Mutation p.R526* 0.50 TCGA-DU-6392-01 3 57143645 57143645 G A IL17RD Missense_Mutation p.T157M 0.34 deleterious(0.02) possibly_damaging(0.893) TCGA-DU-6392-01 3 57203355 57203355 C A IL17RD 5'Flank 0.62 TCGA-DU-6392-01 3 57274504 57274504 T C APPL1 Silent p.C99C 0.42 TCGA-DU-6392-01 3 57276920 57276921 - A APPL1 Frame_Shift_Ins p.R154Kfs*4 0.29 TCGA-DU-6392-01 3 57293919 57293919 G T APPL1 Missense_Mutation p.M510I 0.13 deleterious(0.01) benign(0.027) TCGA-DU-6392-01 3 57302429 57302429 C T APPL1 Missense_Mutation p.R633C 0.38 deleterious(0.01) possibly_damaging(0.832) TCGA-DU-6392-01 3 57303661 57303661 G A APPL1 Silent p.Q692Q 0.07 TCGA-DU-6392-01 3 57303715 57303715 A C APPL1 Nonstop_Mutation p.*710Yext*42 0.38 TCGA-DU-6392-01 3 57542583 57542583 C T PDE12 Silent p.R159R 0.37 TCGA-DU-6392-01 3 57850573 57850573 G A SLMAP Intron 0.40 TCGA-DU-6392-01 3 58080562 58080562 G T FLNB Splice_Site p.X263_splice 0.07 TCGA-DU-6392-01 3 58097997 58097997 C T FLNB Silent p.I899I 0.37 TCGA-DU-6392-01 3 58132695 58132695 C T FLNB Silent p.G1932G 0.12 TCGA-DU-6392-01 3 58134478 58134478 C T FLNB Missense_Mutation p.S2028L 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 3 58139357 58139357 C T FLNB Missense_Mutation p.A2239V 0.35 tolerated(0.51) benign(0.07) TCGA-DU-6392-01 3 58179141 58179141 C T DNASE1L3 Missense_Mutation p.V244I 0.40 tolerated(0.91) benign(0.006) TCGA-DU-6392-01 3 58510329 58510329 G T ACOX2 Missense_Mutation p.F450L 0.43 deleterious(0.02) possibly_damaging(0.53) TCGA-DU-6392-01 3 58519234 58519234 G A ACOX2 Missense_Mutation p.A174V 0.41 deleterious(0.04) possibly_damaging(0.597) TCGA-DU-6392-01 3 62063840 62063840 C T PTPRG Nonsense_Mutation p.Q175* 0.39 TCGA-DU-6392-01 3 62254828 62254828 A G PTPRG Missense_Mutation p.N998S 0.27 deleterious(0) benign(0.288) TCGA-DU-6392-01 3 62385182 62385182 G A CADPS Missense_Mutation p.R1321C 0.38 deleterious(0) possibly_damaging(0.689) TCGA-DU-6392-01 3 62385245 62385245 A G CADPS Missense_Mutation p.F1300L 0.45 deleterious(0.01) benign(0.153) TCGA-DU-6392-01 3 62452065 62452065 G A CADPS Silent p.D1167D 0.21 TCGA-DU-6392-01 3 62484908 62484908 G A CADPS Missense_Mutation p.L879F 0.46 deleterious(0) possibly_damaging(0.849) TCGA-DU-6392-01 3 62631505 62631505 T C CADPS Missense_Mutation p.E406G 0.08 deleterious(0.04) benign(0.403) TCGA-DU-6392-01 3 63466615 63466615 G A SYNPR Silent p.A64A 0.41 TCGA-DU-6392-01 3 63973901 63973901 C T ATXN7 Missense_Mutation p.T421M 0.09 tolerated(0.11) benign(0.099) TCGA-DU-6392-01 3 63973906 63973906 C T ATXN7 Nonsense_Mutation p.Q423* 0.10 TCGA-DU-6392-01 3 64085353 64085353 C T PRICKLE2 Missense_Mutation p.G637R 0.40 tolerated(0.09) benign(0.402) TCGA-DU-6392-01 3 64133006 64133006 C T PRICKLE2 Missense_Mutation p.S387N 0.35 tolerated(0.21) probably_damaging(0.94) TCGA-DU-6392-01 3 64133153 64133153 G A PRICKLE2 Missense_Mutation p.A338V 0.35 tolerated(1) benign(0.036) TCGA-DU-6392-01 3 64145736 64145736 G A PRICKLE2 Silent p.S92S 0.38 TCGA-DU-6392-01 3 64184478 64184478 C T PRICKLE2 Silent p.P42P 0.45 TCGA-DU-6392-01 3 64184562 64184562 G A PRICKLE2 Silent p.S14S 0.09 TCGA-DU-6392-01 3 64601050 64601050 G A ADAMTS9 Nonsense_Mutation p.Q1046* 0.13 TCGA-DU-6392-01 3 64617176 64617176 G A ADAMTS9 Missense_Mutation p.R782W 0.12 deleterious(0.04) probably_damaging(0.932) TCGA-DU-6392-01 3 65369212 65369212 C T MAGI1 Missense_Mutation p.E835K 0.53 deleterious(0.02) possibly_damaging(0.55) TCGA-DU-6392-01 3 66465424 66465424 C T LRIG1 Silent p.S189S 0.38 TCGA-DU-6392-01 3 67546270 67546270 C A SUCLG2 Missense_Mutation p.K338N 0.10 tolerated(0.16) benign(0.006) TCGA-DU-6392-01 3 69053624 69053624 C T EOGT Silent p.E175E 0.47 TCGA-DU-6392-01 3 69075205 69075205 C T TMF1 Missense_Mutation p.R934H 0.30 tolerated(0.06) possibly_damaging(0.701) TCGA-DU-6392-01 3 69079032 69079032 C T TMF1 Missense_Mutation p.S843N 0.40 tolerated(0.19) benign(0.003) TCGA-DU-6392-01 3 69088055 69088055 C A TMF1 Missense_Mutation p.D645Y 0.42 deleterious(0) possibly_damaging(0.806) TCGA-DU-6392-01 3 69104539 69104539 C A UBA3 3'UTR 0.50 TCGA-DU-6392-01 3 69120750 69120750 G A UBA3 Nonsense_Mutation p.Q95* 0.15 TCGA-DU-6392-01 3 69151036 69151036 C T ARL6IP5 Silent p.L75L 0.38 TCGA-DU-6392-01 3 69153804 69153804 C T ARL6IP5 3'UTR 0.32 TCGA-DU-6392-01 3 69230239 69230239 T C FRMD4B Missense_Mutation p.K888E 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 3 71102876 71102876 G A FOXP1 Nonsense_Mutation p.Q113* 0.32 TCGA-DU-6392-01 3 73024186 73024187 - G GXYLT2 Frame_Shift_Ins p.E404Gfs*19 0.24 TCGA-DU-6392-01 3 73096445 73096445 C T PPP4R2 Silent p.V75V 0.33 TCGA-DU-6392-01 3 73433282 73433282 G A PDZRN3 Missense_Mutation p.T812M 0.17 deleterious(0.04) benign(0.012) TCGA-DU-6392-01 3 7348185 7348185 G A GRM7 Silent p.K293K 0.34 TCGA-DU-6392-01 3 73651590 73651590 C T PDZRN3 Missense_Mutation p.S278N 0.06 tolerated(0.31) benign(0.003) TCGA-DU-6392-01 3 74344360 74344360 G T CNTN3 Missense_Mutation p.S810Y 0.38 tolerated(1) benign(0.15) TCGA-DU-6392-01 3 74347325 74347325 T C CNTN3 Silent p.L728L 0.58 TCGA-DU-6392-01 3 77147402 77147402 G T ROBO2 Missense_Mutation p.R116M 0.16 deleterious(0) unknown(0) TCGA-DU-6392-01 3 77600087 77600087 C A ROBO2 Missense_Mutation p.A409D 0.38 deleterious(0) possibly_damaging(0.887) TCGA-DU-6392-01 3 77600102 77600102 G A ROBO2 Missense_Mutation p.G414E 0.37 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 3 77614262 77614262 C T ROBO2 Missense_Mutation p.R630C 0.42 deleterious(0) possibly_damaging(0.722) TCGA-DU-6392-01 3 77651375 77651375 G T ROBO2 Missense_Mutation p.V973F 0.10 tolerated(0.49) benign(0.403) TCGA-DU-6392-01 3 78763663 78763663 C T ROBO1 Missense_Mutation p.R310Q 0.45 tolerated(0.25) probably_damaging(0.992) TCGA-DU-6392-01 3 8590439 8590439 C T LMCD1 Silent p.S191S 0.33 TCGA-DU-6392-01 3 8672545 8672545 C T SSUH2 Silent p.P157P 0.40 TCGA-DU-6392-01 3 87276561 87276561 C A CHMP2B 5'UTR 0.55 TCGA-DU-6392-01 3 87294956 87294956 G A CHMP2B Silent p.T73T 0.35 TCGA-DU-6392-01 3 88040645 88040645 A C HTR1F Missense_Mutation p.K249T 0.35 tolerated(0.57) benign(0.1) TCGA-DU-6392-01 3 88040823 88040823 T - HTR1F Frame_Shift_Del p.F310Lfs*2 0.28 TCGA-DU-6392-01 3 88188839 88188839 G A ZNF654 Missense_Mutation p.E127K 0.30 tolerated(0.13) benign(0.156) TCGA-DU-6392-01 3 89156894 89156894 G T EPHA3 5'UTR 0.09 TCGA-DU-6392-01 3 9097991 9097991 C T SRGAP3 Missense_Mutation p.V351I 0.32 deleterious(0.05) benign(0.218) TCGA-DU-6392-01 3 93593041 93593041 G T PROS1 3'UTR 0.28 TCGA-DU-6392-01 3 9487358 9487358 A C SETD5 Missense_Mutation p.E486D 0.33 tolerated(0.1) possibly_damaging(0.475) TCGA-DU-6392-01 3 9714422 9714422 T C MTMR14 Missense_Mutation p.L244P 0.40 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 3 9714435 9714435 G A MTMR14 Silent p.P248P 0.39 TCGA-DU-6392-01 3 9719032 9719032 G T MTMR14 Silent p.R261R 0.35 TCGA-DU-6392-01 3 97367132 97367132 C T EPHA6 Intron 0.21 TCGA-DU-6392-01 3 97487043 97487043 C T ARL6 Missense_Mutation p.T31M 0.31 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 3 97705802 97705802 C T GABRR3 Missense_Mutation p.A377T 0.55 tolerated(0.53) benign(0.006) TCGA-DU-6392-01 3 9775966 9775966 G A BRPF1 Missense_Mutation p.D48N 0.47 tolerated(0.12) possibly_damaging(0.63) TCGA-DU-6392-01 3 9776248 9776248 C A BRPF1 Missense_Mutation p.P142T 0.14 tolerated(0.09) benign(0.004) TCGA-DU-6392-01 3 97851814 97851814 G A OR5H1 Missense_Mutation p.M91I 0.34 tolerated(0.21) benign(0.002) TCGA-DU-6392-01 3 9785586 9785586 G A BRPF1 Splice_Site p.X879_splice 0.14 TCGA-DU-6392-01 3 97868254 97868254 C A OR5H14 Missense_Mutation p.L9M 0.36 tolerated(0.07) benign(0.064) TCGA-DU-6392-01 3 97888283 97888283 C A OR5H15 Missense_Mutation p.S247Y 0.09 deleterious(0) probably_damaging(0.928) TCGA-DU-6392-01 3 97888395 97888395 G A OR5H15 Silent p.L284L 0.13 TCGA-DU-6392-01 3 9789022 9789022 G A BRPF1 Missense_Mutation p.D1218N 0.40 tolerated(0.15) benign(0.083) TCGA-DU-6392-01 3 98001933 98001933 C A OR5H2 Missense_Mutation p.L68I 0.38 deleterious(0) possibly_damaging(0.601) TCGA-DU-6392-01 3 98002546 98002546 C T OR5H2 Missense_Mutation p.A272V 0.10 tolerated(0.2) benign(0.02) TCGA-DU-6392-01 3 98188702 98188702 C A OR5K1 Silent p.L94L 0.08 TCGA-DU-6392-01 3 98188949 98188949 T G OR5K1 Missense_Mutation p.F177V 0.07 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 3 98251792 98251792 C T GPR15 Silent p.F305F 0.35 TCGA-DU-6392-01 3 98506939 98506939 G A ST3GAL6 Missense_Mutation p.R164Q 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 3 98518429 98518429 C - DCBLD2 Frame_Shift_Del p.N706Tfs*6 0.09 TCGA-DU-6392-01 3 98600529 98600529 G A DCBLD2 Silent p.S96S 0.36 TCGA-DU-6392-01 3 9870917 9870917 G A TTLL3 Silent p.Q607Q 0.50 TCGA-DU-6392-01 3 9876506 9876506 G T TTLL3 Missense_Mutation p.R756M 0.35 tolerated_low_confidence(1) benign(0.002) TCGA-DU-6392-01 3 9876666 9876666 G A TTLL3 Intron 0.42 TCGA-DU-6392-01 3 9911604 9911604 G T CIDEC Silent p.S182S 0.15 TCGA-DU-6392-01 3 9960204 9960204 G A IL17RC Missense_Mutation p.V197M 0.29 deleterious(0) possibly_damaging(0.784) TCGA-DU-6392-01 3 9982636 9982636 G T CRELD1 Missense_Mutation p.G188V 0.11 tolerated(0.22) benign(0.161) TCGA-DU-6392-01 4 100002577 100002577 G T ADH5 Missense_Mutation p.P95T 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 100129858 100129858 G T ADH6 Missense_Mutation p.F265L 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 100131284 100131284 G T ADH6 Missense_Mutation p.S174R 0.37 deleterious(0) probably_damaging(0.943) TCGA-DU-6392-01 4 100242526 100242526 G T ADH1B 5'UTR 0.39 TCGA-DU-6392-01 4 100349736 100349736 T C ADH7 Missense_Mutation p.M78V 0.10 tolerated(0.59) benign(0.007) TCGA-DU-6392-01 4 100445677 100445677 G T C4orf17 Splice_Site p.X113_splice 0.28 TCGA-DU-6392-01 4 100451060 100451060 A G C4orf17 Missense_Mutation p.N164S 0.13 tolerated(0.45) benign(0.004) TCGA-DU-6392-01 4 100543915 100543915 A G MTTP Silent p.G865G 0.09 TCGA-DU-6392-01 4 10079512 10079512 C T WDR1 Silent p.T478T 0.30 TCGA-DU-6392-01 4 100805267 100805267 G A LAMTOR3 Missense_Mutation p.R85C 0.34 tolerated(0.11) benign(0.015) TCGA-DU-6392-01 4 100822159 100822160 - A DNAJB14 3'UTR 0.21 TCGA-DU-6392-01 4 1018732 1018732 C T FGFRL1 Missense_Mutation p.S371L 0.47 tolerated(0.22) benign(0.004) TCGA-DU-6392-01 4 1018775 1018775 C T FGFRL1 Silent p.A385A 0.44 TCGA-DU-6392-01 4 101947077 101947077 G T PPP3CA Missense_Mutation p.T504N 0.06 tolerated_low_confidence(0.5) unknown(0) TCGA-DU-6392-01 4 103528835 103528835 C T NFKB1 Silent p.Y718Y 0.37 TCGA-DU-6392-01 4 103537625 103537625 C T NFKB1 Silent p.S928S 0.32 TCGA-DU-6392-01 4 103806288 103806288 G A CISD2 Intron 0.42 TCGA-DU-6392-01 4 104017402 104017402 G A BDH2 Missense_Mutation p.L4F 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 4 104053958 104053959 - A CENPE Frame_Shift_Ins p.L2272Ffs*10 0.22 TCGA-DU-6392-01 4 104080348 104080348 G A CENPE Missense_Mutation p.T807I 0.44 benign(0.046) TCGA-DU-6392-01 4 10445301 10445301 A C ZNF518B Silent p.L884L 0.27 TCGA-DU-6392-01 4 10446802 10446802 C T ZNF518B Missense_Mutation p.R384H 0.32 tolerated(0.2) benign(0) TCGA-DU-6392-01 4 10566361 10566361 C T CLNK Silent p.P111P 0.38 TCGA-DU-6392-01 4 106155088 106155088 G A TET2 5'UTR 0.25 TCGA-DU-6392-01 4 106155691 106155691 G A TET2 Missense_Mutation p.V198I 0.29 tolerated(0.11) benign(0.022) TCGA-DU-6392-01 4 106158447 106158447 A - TET2 Frame_Shift_Del p.N1118Ifs*19 0.37 TCGA-DU-6392-01 4 106640343 106640343 G A GSTCD Missense_Mutation p.E185K 0.38 tolerated(0.24) probably_damaging(0.993) TCGA-DU-6392-01 4 106766643 106766643 C T GSTCD Missense_Mutation p.A604V 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-DU-6392-01 4 107253040 107253040 G T AIMP1 Missense_Mutation p.Q225H 0.33 deleterious(0) probably_damaging(0.924) TCGA-DU-6392-01 4 108829850 108829850 G A SGMS2 Missense_Mutation p.R286Q 0.43 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 4 108831512 108831512 A C SGMS2 Missense_Mutation p.K301Q 0.34 deleterious(0.02) benign(0.215) TCGA-DU-6392-01 4 108871448 108871448 C A CYP2U1 Missense_Mutation p.L502I 0.06 tolerated(0.17) probably_damaging(0.997) TCGA-DU-6392-01 4 108955654 108955654 C T HADH 3'UTR 0.33 TCGA-DU-6392-01 4 109084772 109084772 G A LEF1 Silent p.N122N 0.39 TCGA-DU-6392-01 4 109681035 109681035 C A ETNPPL Missense_Mutation p.A69S 0.34 deleterious(0.02) probably_damaging(0.911) TCGA-DU-6392-01 4 109748331 109748331 G A COL25A1 Missense_Mutation p.A575V 0.33 tolerated(0.32) benign(0.058) TCGA-DU-6392-01 4 110431221 110431221 C T SEC24B Missense_Mutation p.A577V 0.34 tolerated(0.05) probably_damaging(0.998) TCGA-DU-6392-01 4 110446649 110446649 G T SEC24B Missense_Mutation p.R927M 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 110452580 110452580 C T SEC24B Missense_Mutation p.R1098C 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 110608696 110608696 G A CCDC109B Missense_Mutation p.R320H 0.33 deleterious(0.01) benign(0.191) TCGA-DU-6392-01 4 110790846 110790846 G T LRIT3 Missense_Mutation p.S314I 0.27 deleterious(0) possibly_damaging(0.755) TCGA-DU-6392-01 4 110791214 110791214 G A LRIT3 Missense_Mutation p.A437T 0.47 tolerated(0.45) benign(0.001) TCGA-DU-6392-01 4 110791385 110791385 A G LRIT3 Missense_Mutation p.S494G 0.10 tolerated(0.45) benign(0) TCGA-DU-6392-01 4 111441427 111441427 T C ENPEP Silent p.Y544Y 0.10 TCGA-DU-6392-01 4 111464190 111464190 G A ENPEP Missense_Mutation p.R655H 0.45 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 111539657 111539657 C T PITX2 Missense_Mutation p.S200N 0.26 tolerated(0.1) probably_damaging(0.982) TCGA-DU-6392-01 4 111539701 111539701 G T PITX2 Missense_Mutation p.N185K 0.56 deleterious(0) probably_damaging(0.923) TCGA-DU-6392-01 4 111553567 111553567 T C PITX2 Missense_Mutation p.D39G 0.38 tolerated(0.23) benign(0.018) TCGA-DU-6392-01 4 113435853 113435853 C T NEUROG2 Missense_Mutation p.R260H 0.24 deleterious_low_confidence(0) possibly_damaging(0.662) TCGA-DU-6392-01 4 113530535 113530535 C A C4orf21 Missense_Mutation p.Q906H 0.21 tolerated(0.1) possibly_damaging(0.74) TCGA-DU-6392-01 4 113540640 113540640 C T C4orf21 Silent p.E186E 0.37 TCGA-DU-6392-01 4 114120208 114120208 A G ANK2 Silent p.Q109Q 0.35 TCGA-DU-6392-01 4 114158192 114158192 C T ANK2 Missense_Mutation p.A178V 0.33 possibly_damaging(0.555) TCGA-DU-6392-01 4 114274547 114274547 A G ANK2 Silent p.E1591E 0.34 TCGA-DU-6392-01 4 114276477 114276477 G T ANK2 Missense_Mutation p.G2235C 0.11 probably_damaging(1) TCGA-DU-6392-01 4 114278095 114278095 G A ANK2 Missense_Mutation p.G2774D 0.09 benign(0.046) TCGA-DU-6392-01 4 114288729 114288729 G A ANK2 Silent p.S3680S 0.31 TCGA-DU-6392-01 4 114290890 114290890 G A ANK2 Missense_Mutation p.V3847I 0.33 possibly_damaging(0.527) TCGA-DU-6392-01 4 115997817 115997817 C A NDST4 Missense_Mutation p.G126W 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 1164196 1164196 C T SPON2 Missense_Mutation p.A269T 0.31 tolerated(0.27) benign(0.103) TCGA-DU-6392-01 4 118005516 118005516 C A TRAM1L1 Missense_Mutation p.R345I 0.36 tolerated(0.15) benign(0.039) TCGA-DU-6392-01 4 119174666 119174666 T C NDST3 Silent p.H804H 0.41 TCGA-DU-6392-01 4 119203986 119203986 C A PRSS12 Nonsense_Mutation p.G774* 0.11 TCGA-DU-6392-01 4 119625123 119625123 G T METTL14 Missense_Mutation p.D258Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 119662179 119662179 C A SEC24D Missense_Mutation p.R670I 0.67 deleterious(0) benign(0.095) TCGA-DU-6392-01 4 119754819 119754819 C T SEC24D Silent p.P11P 0.31 TCGA-DU-6392-01 4 119951134 119951134 C T SYNPO2 Missense_Mutation p.R402W 0.35 deleterious(0) probably_damaging(0.944) TCGA-DU-6392-01 4 119951996 119951996 G A SYNPO2 Missense_Mutation p.R689K 0.41 tolerated(0.29) benign(0.365) TCGA-DU-6392-01 4 119952838 119952838 T C SYNPO2 Missense_Mutation p.Y970H 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 120072113 120072113 G A MYOZ2 Missense_Mutation p.A55T 0.41 deleterious(0.01) possibly_damaging(0.685) TCGA-DU-6392-01 4 120177653 120177653 C T USP53 Missense_Mutation p.R182W 0.29 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 4 120181736 120181736 C A USP53 Silent p.V250V 0.38 TCGA-DU-6392-01 4 120214457 120214457 G T USP53 3'UTR 0.31 TCGA-DU-6392-01 4 120528342 120528342 C T PDE5A Missense_Mutation p.R88H 0.46 tolerated(0.43) benign(0.001) TCGA-DU-6392-01 4 1209931 1209931 C T CTBP1 Missense_Mutation p.D204N 0.59 tolerated(0.06) possibly_damaging(0.742) TCGA-DU-6392-01 4 121958553 121958553 C T NDNF Silent p.T191T 0.32 TCGA-DU-6392-01 4 122068271 122068271 T C TNIP3 Missense_Mutation p.Q300R 0.08 tolerated(0.11) probably_damaging(0.99) TCGA-DU-6392-01 4 122681480 122681480 G T TMEM155 Nonsense_Mutation p.S121* 0.42 TCGA-DU-6392-01 4 122682771 122682771 T C TMEM155 Missense_Mutation p.H45R 0.12 tolerated(0.13) probably_damaging(0.991) TCGA-DU-6392-01 4 122754537 122754537 G T BBS7 Missense_Mutation p.L509M 0.11 deleterious(0) possibly_damaging(0.82) TCGA-DU-6392-01 4 1232011 1232011 G A CTBP1 Missense_Mutation p.A52V 0.39 deleterious(0.05) possibly_damaging(0.868) TCGA-DU-6392-01 4 123252487 123252487 G A KIAA1109 Silent p.T3752T 0.31 TCGA-DU-6392-01 4 123283436 123283436 G A KIAA1109 3'UTR 0.10 TCGA-DU-6392-01 4 1235270 1235270 C T CTBP1 Intron 0.30 TCGA-DU-6392-01 4 123978389 123978389 C T SPATA5 Missense_Mutation p.A720V 0.33 deleterious(0) possibly_damaging(0.647) TCGA-DU-6392-01 4 124011759 124011759 G A SPATA5 Missense_Mutation p.D747N 0.40 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 4 124177314 124177314 C T SPATA5 Silent p.T828T 0.36 TCGA-DU-6392-01 4 124323307 124323307 C T SPRY1 Silent p.C187C 0.37 TCGA-DU-6392-01 4 124323657 124323657 A G SPRY1 Missense_Mutation p.Y304C 0.10 tolerated(0.22) probably_damaging(0.986) TCGA-DU-6392-01 4 1244466 1244466 C T CTBP1 5'Flank 0.15 TCGA-DU-6392-01 4 125591022 125591022 C T ANKRD50 Missense_Mutation p.S1137N 0.32 tolerated(0.08) benign(0.017) TCGA-DU-6392-01 4 125593066 125593066 C T ANKRD50 Missense_Mutation p.A456T 0.31 deleterious(0.02) probably_damaging(0.956) TCGA-DU-6392-01 4 126239717 126239717 C T FAT4 Silent p.D717D 0.29 TCGA-DU-6392-01 4 126328128 126328128 C T FAT4 Missense_Mutation p.R1801W 0.35 probably_damaging(0.989) TCGA-DU-6392-01 4 126336687 126336687 G A FAT4 Missense_Mutation p.R2190H 0.14 benign(0.262) TCGA-DU-6392-01 4 126337709 126337709 G A FAT4 Missense_Mutation p.G2317E 0.37 benign(0.004) TCGA-DU-6392-01 4 126355525 126355525 G T FAT4 Missense_Mutation p.D2382Y 0.32 probably_damaging(1) TCGA-DU-6392-01 4 126371190 126371190 G T FAT4 Missense_Mutation p.A3007S 0.24 probably_damaging(0.999) TCGA-DU-6392-01 4 128626764 128626764 C T INTU Missense_Mutation p.H529Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 128626796 128626796 C T INTU Silent p.A539A 0.09 TCGA-DU-6392-01 4 128632127 128632127 G A INTU Missense_Mutation p.G810E 0.37 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 4 128819734 128819735 - T PLK4 3'UTR 0.30 TCGA-DU-6392-01 4 128951834 128951834 C T C4orf29 3'UTR 0.44 TCGA-DU-6392-01 4 129012278 129012278 C T LARP1B Nonsense_Mutation p.R161* 0.42 TCGA-DU-6392-01 4 1316186 1316186 G A MAEA Silent p.E158E 0.38 TCGA-DU-6392-01 4 1332393 1332393 C T MAEA Silent p.V361V 0.27 TCGA-DU-6392-01 4 1332974 1332974 C T MAEA 3'UTR 0.55 TCGA-DU-6392-01 4 13601606 13601606 A G BOD1L1 Silent p.I2306I 0.37 TCGA-DU-6392-01 4 13602437 13602437 T G BOD1L1 Missense_Mutation p.K2029N 0.19 probably_damaging(0.962) TCGA-DU-6392-01 4 13603268 13603268 T C BOD1L1 Silent p.E1752E 0.39 TCGA-DU-6392-01 4 13605908 13605908 C T BOD1L1 Silent p.S872S 0.36 TCGA-DU-6392-01 4 13615173 13615173 C T BOD1L1 Silent p.T429T 0.31 TCGA-DU-6392-01 4 1369293 1369293 C T UVSSA Missense_Mutation p.A477V 0.44 tolerated(0.35) benign(0.04) TCGA-DU-6392-01 4 138442723 138442723 C T PCDH18 Silent p.T956T 0.28 TCGA-DU-6392-01 4 139140512 139140512 C T SLC7A11 Silent p.T218T 0.37 TCGA-DU-6392-01 4 139981701 139981701 C A ELF2 Missense_Mutation p.A300S 0.07 tolerated(0.77) benign(0.002) TCGA-DU-6392-01 4 139981791 139981791 C A ELF2 Nonsense_Mutation p.G270* 0.34 TCGA-DU-6392-01 4 140275240 140275240 T C NAA15 Missense_Mutation p.F359L 0.10 tolerated(0.2) probably_damaging(0.978) TCGA-DU-6392-01 4 140454392 140454392 G A SETD7 Missense_Mutation p.T100I 0.14 tolerated(0.34) benign(0) TCGA-DU-6392-01 4 140468102 140468102 G A SETD7 Missense_Mutation p.R48W 0.18 deleterious(0) probably_damaging(0.95) TCGA-DU-6392-01 4 140641269 140641269 G A MAML3 Silent p.S875S 0.44 TCGA-DU-6392-01 4 140641415 140641415 G A MAML3 Missense_Mutation p.R827W 0.38 probably_damaging(0.999) TCGA-DU-6392-01 4 140810384 140810384 G T MAML3 Intron 0.37 TCGA-DU-6392-01 4 140811770 140811770 G T MAML3 Missense_Mutation p.L274I 0.33 benign(0.16) TCGA-DU-6392-01 4 141320176 141320176 G A CLGN Missense_Mutation p.T238I 0.32 deleterious(0) possibly_damaging(0.691) TCGA-DU-6392-01 4 141446679 141446679 C T ELMOD2 Nonsense_Mutation p.R33* 0.36 TCGA-DU-6392-01 4 141600336 141600336 A G TBC1D9 Missense_Mutation p.V204A 0.41 tolerated(0.49) benign(0.007) TCGA-DU-6392-01 4 141832381 141832381 G T RNF150 Missense_Mutation p.A372D 0.43 tolerated(0.18) benign(0.003) TCGA-DU-6392-01 4 141832500 141832500 G A RNF150 Silent p.A332A 0.34 TCGA-DU-6392-01 4 142151400 142151400 G A ZNF330 Missense_Mutation p.V167I 0.41 tolerated(0.2) benign(0.038) TCGA-DU-6392-01 4 142155283 142155283 G T ZNF330 3'UTR 0.21 TCGA-DU-6392-01 4 142653933 142653934 - A IL15 Frame_Shift_Ins p.N143Kfs*3 0.24 TCGA-DU-6392-01 4 143159150 143159150 C A INPP4B Missense_Mutation p.V235L 0.44 tolerated(0.1) possibly_damaging(0.499) TCGA-DU-6392-01 4 144141644 144141644 C T USP38 3'UTR 0.32 TCGA-DU-6392-01 4 144445597 144445597 C T SMARCA5 Missense_Mutation p.T166I 0.29 tolerated(0.4) benign(0.009) TCGA-DU-6392-01 4 144465101 144465101 A T SMARCA5 Silent p.G716G 0.11 TCGA-DU-6392-01 4 145573764 145573764 C A HHIP Missense_Mutation p.S96Y 0.23 deleterious(0) probably_damaging(0.975) TCGA-DU-6392-01 4 145635498 145635498 T C HHIP Silent p.N515N 0.33 TCGA-DU-6392-01 4 145916607 145916607 T C ANAPC10 Missense_Mutation p.Y159C 0.33 deleterious(0.01) benign(0.332) TCGA-DU-6392-01 4 146044650 146044651 - G ABCE1 Frame_Shift_Ins p.T514Dfs*8 0.26 TCGA-DU-6392-01 4 146058488 146058488 C T OTUD4 3'UTR 0.31 TCGA-DU-6392-01 4 146059313 146059313 C T OTUD4 Missense_Mutation p.E807K 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 146067419 146067419 G A OTUD4 Silent p.S409S 0.27 TCGA-DU-6392-01 4 146080497 146080497 G A OTUD4 Intron 0.40 TCGA-DU-6392-01 4 146092833 146092833 C T OTUD4 Missense_Mutation p.E30K 0.26 deleterious(0.04) possibly_damaging(0.472) TCGA-DU-6392-01 4 146435905 146435905 C T SMAD1 Missense_Mutation p.A47V 0.45 tolerated(0.05) possibly_damaging(0.739) TCGA-DU-6392-01 4 146475083 146475083 T A SMAD1 Missense_Mutation p.I382N 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 146824126 146824126 C A ZNF827 Silent p.L95L 0.41 TCGA-DU-6392-01 4 147215246 147215246 A G SLC10A7 Missense_Mutation p.I186T 0.12 deleterious(0) benign(0.36) TCGA-DU-6392-01 4 147824791 147824791 T A TTC29 Missense_Mutation p.E164V 0.41 deleterious(0) benign(0.323) TCGA-DU-6392-01 4 148546069 148546069 C T TMEM184C Missense_Mutation p.R136W 0.42 deleterious(0.01) possibly_damaging(0.773) TCGA-DU-6392-01 4 148555495 148555495 T C TMEM184C Silent p.T409T 0.15 TCGA-DU-6392-01 4 148579097 148579097 A T PRMT10 Silent p.P392P 0.21 TCGA-DU-6392-01 4 148591866 148591866 C T PRMT10 Missense_Mutation p.D258N 0.37 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 4 148886181 148886181 G A ARHGAP10 Missense_Mutation p.G486D 0.11 tolerated(1) probably_damaging(0.985) TCGA-DU-6392-01 4 151504117 151504117 C T MAB21L2 5'UTR 0.40 TCGA-DU-6392-01 4 151504852 151504852 C T MAB21L2 Missense_Mutation p.S224L 0.49 deleterious(0.01) benign(0.426) TCGA-DU-6392-01 4 151504913 151504913 C T MAB21L2 Silent p.G244G 0.18 TCGA-DU-6392-01 4 151749600 151749600 C A LRBA Missense_Mutation p.D1635Y 0.44 deleterious(0) benign(0.025) TCGA-DU-6392-01 4 151829607 151829607 C T LRBA Missense_Mutation p.V458I 0.24 tolerated(0.31) benign(0.376) TCGA-DU-6392-01 4 152048841 152048841 C T SH3D19 Missense_Mutation p.V729I 0.44 tolerated(0.22) benign(0) TCGA-DU-6392-01 4 153244280 153244280 G T FBXW7 Missense_Mutation p.A626D 0.22 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 153303537 153303537 C T FBXW7 Intron 0.37 TCGA-DU-6392-01 4 153549478 153549478 G A TMEM154 3'UTR 0.50 TCGA-DU-6392-01 4 153691371 153691371 G A TIGD4 Silent p.S262S 0.30 TCGA-DU-6392-01 4 153886116 153886116 G A FHDC1 Silent p.Q363Q 0.35 TCGA-DU-6392-01 4 153896906 153896906 C A FHDC1 Silent p.S821S 0.08 TCGA-DU-6392-01 4 154315439 154315439 C T MND1 Missense_Mutation p.A101V 0.11 tolerated(0.24) benign(0.012) TCGA-DU-6392-01 4 154318427 154318427 G A MND1 Silent p.Q136Q 0.59 TCGA-DU-6392-01 4 154336055 154336055 A T MND1 3'UTR 0.41 TCGA-DU-6392-01 4 154525057 154525057 G A KIAA0922 Missense_Mutation p.A965T 0.14 tolerated(0.37) benign(0.019) TCGA-DU-6392-01 4 154541987 154541987 G A KIAA0922 Missense_Mutation p.R1216Q 0.37 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 4 154557572 154557572 G A KIAA0922 Silent p.S1559S 0.45 TCGA-DU-6392-01 4 154625598 154625598 G A TLR2 Silent p.T513T 0.41 TCGA-DU-6392-01 4 154649450 154649450 G A RNF175 Missense_Mutation p.R104W 0.41 deleterious(0.01) possibly_damaging(0.908) TCGA-DU-6392-01 4 155160378 155160378 T G DCHS2 Missense_Mutation p.N2024T 0.17 deleterious(0.04) benign(0.08) TCGA-DU-6392-01 4 155219766 155219766 G T DCHS2 Silent p.T1445T 0.40 TCGA-DU-6392-01 4 155242188 155242188 C A DCHS2 Missense_Mutation p.D1000Y 0.39 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 4 155463420 155463420 C T PLRG1 Silent p.G202G 0.41 TCGA-DU-6392-01 4 155468979 155468979 A C PLRG1 Missense_Mutation p.L48R 0.11 tolerated(0.07) benign(0.004) TCGA-DU-6392-01 4 155505592 155505592 G A FGA Missense_Mutation p.A762V 0.32 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 4 155506809 155506809 C A FGA Missense_Mutation p.R591I 0.40 deleterious(0) possibly_damaging(0.731) TCGA-DU-6392-01 4 155507082 155507082 A G FGA Missense_Mutation p.L500S 0.08 tolerated(0.12) possibly_damaging(0.901) TCGA-DU-6392-01 4 155665575 155665575 G T LRAT Missense_Mutation p.D33Y 0.44 deleterious(0.01) benign(0.396) TCGA-DU-6392-01 4 155670276 155670276 G A LRAT Nonsense_Mutation p.W227* 0.36 TCGA-DU-6392-01 4 156634624 156634624 C T GUCY1A3 Silent p.I487I 0.36 TCGA-DU-6392-01 4 156757855 156757855 G A ASIC5 Silent p.S407S 0.43 TCGA-DU-6392-01 4 157688928 157688928 G A PDGFC Silent p.H306H 0.40 TCGA-DU-6392-01 4 158057822 158057822 C T GLRB Missense_Mutation p.R167C 0.38 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 4 158257783 158257783 G T GRIA2 Missense_Mutation p.E576D 0.10 tolerated(0.47) benign(0.065) TCGA-DU-6392-01 4 158257812 158257812 G T GRIA2 Missense_Mutation p.S586I 0.10 tolerated(0.2) benign(0.03) TCGA-DU-6392-01 4 159533502 159533502 C T RXFP1 Missense_Mutation p.S223F 0.41 deleterious(0) possibly_damaging(0.88) TCGA-DU-6392-01 4 159569700 159569700 G A RXFP1 Missense_Mutation p.M602I 0.31 deleterious(0) probably_damaging(0.934) TCGA-DU-6392-01 4 159624692 159624692 G T ETFDH Nonsense_Mutation p.E412* 0.13 TCGA-DU-6392-01 4 159642600 159642600 C T PPID Missense_Mutation p.V41I 0.70 deleterious(0.02) possibly_damaging(0.509) TCGA-DU-6392-01 4 15964500 15964500 C T FGFBP2 Missense_Mutation p.A85T 0.41 tolerated(0.74) benign(0.001) TCGA-DU-6392-01 4 159791564 159791564 C T FNIP2 Silent p.T964T 0.31 TCGA-DU-6392-01 4 15985894 15985894 C T PROM1 Missense_Mutation p.D789N 0.40 tolerated(0.06) benign(0.341) TCGA-DU-6392-01 4 160251596 160251596 G A RAPGEF2 Missense_Mutation p.M310I 0.34 tolerated(0.14) benign(0.06) TCGA-DU-6392-01 4 160252938 160252938 G T RAPGEF2 Missense_Mutation p.D417Y 0.12 deleterious(0) probably_damaging(0.943) TCGA-DU-6392-01 4 160277280 160277280 C T RAPGEF2 Nonsense_Mutation p.Q1482* 0.24 TCGA-DU-6392-01 4 162306918 162306918 A C FSTL5 Missense_Mutation p.I842S 0.26 deleterious(0) benign(0.046) TCGA-DU-6392-01 4 162402263 162402263 G A FSTL5 Missense_Mutation p.A506V 0.34 deleterious(0) probably_damaging(0.97) TCGA-DU-6392-01 4 16257980 16257980 G A TAPT1-AS1 RNA 0.33 TCGA-DU-6392-01 4 164050495 164050495 C A NAF1 Missense_Mutation p.D347Y 0.29 deleterious(0) benign(0.013) TCGA-DU-6392-01 4 164246906 164246906 T C NPY1R Missense_Mutation p.Y235C 0.11 deleterious(0.01) probably_damaging(0.95) TCGA-DU-6392-01 4 164247759 164247759 C T NPY1R 5'UTR 0.55 TCGA-DU-6392-01 4 16504355 16504355 C T LDB2 Missense_Mutation p.A345T 0.08 tolerated(0.23) benign(0.004) TCGA-DU-6392-01 4 165890897 165890897 C A TRIM61 Missense_Mutation p.K86N 0.15 tolerated(0.09) benign(0) TCGA-DU-6392-01 4 166226860 166226860 C T KLHL2 Missense_Mutation p.S345F 0.34 deleterious(0.03) benign(0.027) TCGA-DU-6392-01 4 166414350 166414350 C T CPE Nonsense_Mutation p.R381* 0.21 TCGA-DU-6392-01 4 166964527 166964527 G T TLL1 Missense_Mutation p.V494L 0.07 deleterious(0) possibly_damaging(0.676) TCGA-DU-6392-01 4 166964541 166964541 C T TLL1 Silent p.Y498Y 0.38 TCGA-DU-6392-01 4 166999172 166999172 G A TLL1 Missense_Mutation p.R811Q 0.30 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 4 169105788 169105788 C T ANXA10 Nonsense_Mutation p.R288* 0.33 TCGA-DU-6392-01 4 169172246 169172246 C A DDX60 Missense_Mutation p.K1239N 0.42 tolerated(0.16) benign(0.275) TCGA-DU-6392-01 4 169183841 169183841 C T DDX60 Missense_Mutation p.R1046Q 0.35 tolerated(0.09) benign(0.048) TCGA-DU-6392-01 4 169195159 169195159 C A DDX60 Missense_Mutation p.A794S 0.39 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 4 169353660 169353660 G A DDX60L Missense_Mutation p.H488Y 0.09 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 4 169383115 169383115 T C DDX60L Missense_Mutation p.N114S 0.25 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 169432880 169432880 C A PALLD Silent p.L75L 0.11 TCGA-DU-6392-01 4 169630277 169630277 G A PALLD Missense_Mutation p.A534T 0.34 deleterious(0.02) probably_damaging(0.988) TCGA-DU-6392-01 4 169842815 169842815 G A PALLD Missense_Mutation p.R994H 0.37 deleterious(0) possibly_damaging(0.79) TCGA-DU-6392-01 4 169911161 169911161 T G CBR4 3'UTR 0.44 TCGA-DU-6392-01 4 169923300 169923300 C A CBR4 Nonsense_Mutation p.G153* 0.09 TCGA-DU-6392-01 4 169928023 169928023 T A CBR4 Missense_Mutation p.T95S 0.41 deleterious(0.02) benign(0.038) TCGA-DU-6392-01 4 170038810 170038810 G A SH3RF1 Silent p.G547G 0.31 TCGA-DU-6392-01 4 170628254 170628254 G T CLCN3 Missense_Mutation p.R662S 0.10 tolerated(0.54) benign(0.005) TCGA-DU-6392-01 4 170663239 170663240 - T C4orf27 Frame_Shift_Ins p.L173Tfs*2 0.12 TCGA-DU-6392-01 4 1729693 1729693 C A TACC3 Silent p.S188S 0.15 TCGA-DU-6392-01 4 173961305 173961305 C T GALNTL6 3'UTR 0.41 TCGA-DU-6392-01 4 174253297 174253297 T C HMGB2 Silent p.E188E 0.09 TCGA-DU-6392-01 4 1746548 1746548 G A TACC3 Missense_Mutation p.V814M 0.11 deleterious(0.03) probably_damaging(0.92) TCGA-DU-6392-01 4 17488738 17488738 G T QDPR 3'UTR 0.30 TCGA-DU-6392-01 4 17492298 17492298 C A QDPR Nonsense_Mutation p.E206* 0.27 TCGA-DU-6392-01 4 175598271 175598271 C T GLRA3 Silent p.T295T 0.40 TCGA-DU-6392-01 4 17609105 17609105 G A LAP3 Missense_Mutation p.V485M 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 17623272 17623273 - A MED28 Frame_Shift_Ins p.R99Kfs*23 0.29 TCGA-DU-6392-01 4 17625336 17625336 A G MED28 Missense_Mutation p.K151R 0.10 tolerated(0.25) benign(0.004) TCGA-DU-6392-01 4 176556060 176556060 G A GPM6A Missense_Mutation p.T278I 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DU-6392-01 4 177052789 177052789 C T WDR17 Missense_Mutation p.A357V 0.35 deleterious(0.04) probably_damaging(0.995) TCGA-DU-6392-01 4 177094487 177094487 G A WDR17 Missense_Mutation p.R1144H 0.29 deleterious(0.01) benign(0.41) TCGA-DU-6392-01 4 177114617 177114617 G A SPATA4 Missense_Mutation p.A112V 0.35 deleterious(0.01) possibly_damaging(0.464) TCGA-DU-6392-01 4 177142710 177142710 G A ASB5 Silent p.N142N 0.14 TCGA-DU-6392-01 4 178274725 178274725 A G NEIL3 Missense_Mutation p.K435E 0.08 tolerated(1) benign(0.001) TCGA-DU-6392-01 4 178283482 178283482 C T NEIL3 Missense_Mutation p.R559C 0.33 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 4 1800986 1800986 C A FGFR3 Missense_Mutation p.P39T 0.07 tolerated_low_confidence(0.06) benign(0.096) TCGA-DU-6392-01 4 1808273 1808273 C T FGFR3 Silent p.V679V 0.43 TCGA-DU-6392-01 4 183721441 183721441 C T TENM3 Silent p.P2679P 0.27 TCGA-DU-6392-01 4 183814219 183814219 C T DCTD Silent p.A152A 0.14 TCGA-DU-6392-01 4 184175070 184175070 G A WWC2 Missense_Mutation p.E372K 0.48 tolerated(0.07) benign(0.025) TCGA-DU-6392-01 4 184240733 184240733 C T CLDN22 Silent p.T213T 0.32 TCGA-DU-6392-01 4 184366750 184366750 C A CDKN2AIP Missense_Mutation p.A112D 0.49 deleterious(0) unknown(0) TCGA-DU-6392-01 4 184367411 184367411 C T CDKN2AIP Missense_Mutation p.R192W 0.38 deleterious(0.01) unknown(0) TCGA-DU-6392-01 4 184587440 184587440 G T TRAPPC11 Missense_Mutation p.G79W 0.37 deleterious(0) probably_damaging(0.965) TCGA-DU-6392-01 4 184601408 184601408 C A TRAPPC11 Silent p.L367L 0.40 TCGA-DU-6392-01 4 184614139 184614139 C T TRAPPC11 Silent p.G692G 0.31 TCGA-DU-6392-01 4 184615145 184615145 C T TRAPPC11 Missense_Mutation p.A821V 0.28 tolerated(0.23) probably_damaging(0.913) TCGA-DU-6392-01 4 184930405 184930405 C T STOX2 Silent p.I138I 0.50 TCGA-DU-6392-01 4 184930527 184930527 C T STOX2 Missense_Mutation p.T179M 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-DU-6392-01 4 185074733 185074733 C A ENPP6 Missense_Mutation p.R132M 0.38 deleterious(0.01) possibly_damaging(0.9) TCGA-DU-6392-01 4 185320164 185320164 C T IRF2 Missense_Mutation p.C200Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 4 185615881 185615881 G A PRIMPOL Missense_Mutation p.S544N 0.31 benign(0.004) TCGA-DU-6392-01 4 185684330 185684330 G A ACSL1 Silent p.G504G 0.35 TCGA-DU-6392-01 4 186283234 186283234 G A SNX25 Silent p.Q772Q 0.47 TCGA-DU-6392-01 4 186288381 186288381 C T LRP2BP Missense_Mutation p.A333T 0.40 tolerated(0.54) benign(0.003) TCGA-DU-6392-01 4 186536048 186536048 G A SORBS2 Silent p.I1040I 0.38 TCGA-DU-6392-01 4 186544169 186544169 T C SORBS2 Missense_Mutation p.Y901C 0.35 deleterious(0.01) possibly_damaging(0.9) TCGA-DU-6392-01 4 186544816 186544816 G A SORBS2 Silent p.S685S 0.37 TCGA-DU-6392-01 4 187003547 187003547 G A TLR3 Missense_Mutation p.S236N 0.41 tolerated(0.78) benign(0) TCGA-DU-6392-01 4 187004232 187004232 C A TLR3 Silent p.S464S 0.42 TCGA-DU-6392-01 4 187005136 187005136 G T TLR3 Missense_Mutation p.D766Y 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 187005843 187005843 T C TLR3 Missense_Mutation p.L844P 0.56 tolerated(0.06) probably_damaging(0.974) TCGA-DU-6392-01 4 187131752 187131752 G A CYP4V2 Missense_Mutation p.G512D 0.29 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 187153431 187153431 A T KLKB1 Missense_Mutation p.D70V 0.24 deleterious(0.01) benign(0.033) TCGA-DU-6392-01 4 187455433 187455433 T G MTNR1A Missense_Mutation p.T155P 0.08 deleterious(0) possibly_damaging(0.516) TCGA-DU-6392-01 4 187521066 187521066 G A FAT1 Missense_Mutation p.P4030L 0.31 benign(0.008) TCGA-DU-6392-01 4 187524130 187524130 G A FAT1 Silent p.S3803S 0.42 TCGA-DU-6392-01 4 187531103 187531103 G A FAT1 Missense_Mutation p.A3307V 0.38 probably_damaging(1) TCGA-DU-6392-01 4 187539523 187539523 T C FAT1 Silent p.K2739K 0.39 TCGA-DU-6392-01 4 187541117 187541117 C T FAT1 Missense_Mutation p.S2208N 0.34 benign(0.049) TCGA-DU-6392-01 4 187557909 187557909 G A FAT1 Missense_Mutation p.R1268W 0.41 benign(0.12) TCGA-DU-6392-01 4 188924294 188924294 C T ZFP42 Silent p.F111F 0.35 TCGA-DU-6392-01 4 188924381 188924381 G A ZFP42 Silent p.S140S 0.42 TCGA-DU-6392-01 4 189013034 189013034 T G TRIML2 Missense_Mutation p.R219S 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 189063519 189063519 G T TRIML1 Missense_Mutation p.E206D 0.16 tolerated(0.59) benign(0.004) TCGA-DU-6392-01 4 189068102 189068102 C T TRIML1 Missense_Mutation p.A328V 0.42 tolerated(0.18) probably_damaging(0.999) TCGA-DU-6392-01 4 1932478 1932478 C T WHSC1 Silent p.V512V 0.32 TCGA-DU-6392-01 4 1976383 1976383 C A WHSC1 Intron 0.09 TCGA-DU-6392-01 4 20512133 20512133 C T SLIT2 Silent p.N310N 0.09 TCGA-DU-6392-01 4 20619166 20619166 A G SLIT2 Missense_Mutation p.N1414S 0.59 tolerated(0.46) benign(0.026) TCGA-DU-6392-01 4 20711343 20711343 G A PACRGL Missense_Mutation p.E105K 0.32 tolerated(0.05) benign(0.219) TCGA-DU-6392-01 4 20733666 20733666 A G KCNIP4 Missense_Mutation p.V223A 0.09 deleterious(0) possibly_damaging(0.529) TCGA-DU-6392-01 4 22438079 22438079 A T GPR125 Missense_Mutation p.L424H 0.08 deleterious(0) probably_damaging(0.913) TCGA-DU-6392-01 4 2252325 2252325 G A MXD4 Silent p.G192G 0.31 TCGA-DU-6392-01 4 23803420 23803420 G A PPARGC1A Silent p.N742N 0.13 TCGA-DU-6392-01 4 23814673 23814673 A G PPARGC1A Silent p.R623R 0.32 TCGA-DU-6392-01 4 23815351 23815351 C T PPARGC1A Silent p.R585R 0.36 TCGA-DU-6392-01 4 23886363 23886363 G T PPARGC1A Intron 0.09 TCGA-DU-6392-01 4 25005147 25005147 C A LGI2 Missense_Mutation p.D522Y 0.09 deleterious(0.03) probably_damaging(0.99) TCGA-DU-6392-01 4 25005708 25005708 C T LGI2 Missense_Mutation p.D335N 0.37 deleterious(0.02) benign(0.016) TCGA-DU-6392-01 4 25013964 25013964 G A LGI2 Silent p.N271N 0.32 TCGA-DU-6392-01 4 25256785 25256785 C A PI4K2B Nonsense_Mutation p.C174* 0.12 TCGA-DU-6392-01 4 25258202 25258202 C T PI4K2B Missense_Mutation p.A221V 0.36 tolerated(0.49) possibly_damaging(0.509) TCGA-DU-6392-01 4 25667852 25667852 G A SLC34A2 Missense_Mutation p.S161N 0.37 deleterious(0.03) possibly_damaging(0.558) TCGA-DU-6392-01 4 25676131 25676131 C T SLC34A2 Silent p.I446I 0.40 TCGA-DU-6392-01 4 25678251 25678251 G A SLC34A2 Silent p.A651A 0.37 TCGA-DU-6392-01 4 25789846 25789846 C A SEL1L3 Missense_Mutation p.K739N 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 25792082 25792082 C T SEL1L3 Missense_Mutation p.A691T 0.40 deleterious(0) probably_damaging(0.966) TCGA-DU-6392-01 4 25792085 25792085 C T SEL1L3 Missense_Mutation p.A690T 0.46 tolerated(0.14) possibly_damaging(0.751) TCGA-DU-6392-01 4 25819872 25819872 G A SEL1L3 Silent p.L484L 0.55 TCGA-DU-6392-01 4 25835087 25835087 A G SEL1L3 Missense_Mutation p.V322A 0.38 deleterious(0.01) benign(0.129) TCGA-DU-6392-01 4 26483461 26483461 G T CCKAR Silent p.S362S 0.33 TCGA-DU-6392-01 4 26490892 26490892 G A CCKAR Silent p.F109F 0.38 TCGA-DU-6392-01 4 2661593 2661593 C - FAM193A Frame_Shift_Del p.V231Sfs*81 0.27 TCGA-DU-6392-01 4 26640404 26640404 A G TBC1D19 Silent p.G127G 0.35 TCGA-DU-6392-01 4 26750113 26750113 G T TBC1D19 Missense_Mutation p.R467I 0.28 tolerated(0.33) probably_damaging(1) TCGA-DU-6392-01 4 27010624 27010624 G A STIM2 Missense_Mutation p.G505R 0.22 tolerated(0.15) benign(0.111) TCGA-DU-6392-01 4 2749465 2749465 C T TNIP2 Missense_Mutation p.A162T 0.41 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 4 3015421 3015421 G A GRK4 Missense_Mutation p.A203T 0.33 deleterious(0) probably_damaging(0.946) TCGA-DU-6392-01 4 3037201 3037201 A C GRK4 Missense_Mutation p.N453T 0.11 deleterious(0) benign(0.355) TCGA-DU-6392-01 4 30725518 30725518 G T PCDH7 Missense_Mutation p.G825V 0.25 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 3174046 3174046 G T HTT Splice_Site p.X1289_splice 0.08 TCGA-DU-6392-01 4 3188447 3188447 G A HTT Splice_Site p.X1663_splice 0.37 TCGA-DU-6392-01 4 3237092 3237092 C T HTT Silent p.D2846D 0.39 TCGA-DU-6392-01 4 3255043 3255043 C T MSANTD1 Missense_Mutation p.P144S 0.34 tolerated(0.52) benign(0.08) TCGA-DU-6392-01 4 3418809 3418809 C T RGS12 Missense_Mutation p.T866M 0.44 deleterious(0) possibly_damaging(0.601) TCGA-DU-6392-01 4 3419179 3419179 A G RGS12 Missense_Mutation p.K891R 0.09 tolerated(0.25) benign(0.007) TCGA-DU-6392-01 4 3429985 3429985 G A RGS12 Intron 0.35 TCGA-DU-6392-01 4 3432328 3432328 G A RGS12 Missense_Mutation p.A1254T 0.54 tolerated(0.16) benign(0.066) TCGA-DU-6392-01 4 3443842 3443842 C T HGFAC Silent p.G38G 0.32 TCGA-DU-6392-01 4 36134931 36134931 C T ARAP2 Missense_Mutation p.G1115D 0.34 deleterious(0) possibly_damaging(0.842) TCGA-DU-6392-01 4 37591844 37591844 C T C4orf19 Missense_Mutation p.P56L 0.35 tolerated(1) benign(0.001) TCGA-DU-6392-01 4 37841824 37841824 C T PGM2 Missense_Mutation p.P221L 0.08 deleterious(0) possibly_damaging(0.803) TCGA-DU-6392-01 4 37848641 37848641 G A PGM2 Missense_Mutation p.R366H 0.12 tolerated(0.16) benign(0.001) TCGA-DU-6392-01 4 37863187 37863188 - T PGM2 Frame_Shift_Ins p.Q601Pfs*15 0.23 TCGA-DU-6392-01 4 38690303 38690303 G A KLF3 Missense_Mutation p.G52D 0.11 deleterious(0.01) benign(0.08) TCGA-DU-6392-01 4 38776080 38776080 T C TLR10 Missense_Mutation p.I378V 0.42 tolerated(0.08) benign(0.066) TCGA-DU-6392-01 4 38776140 38776140 T C TLR10 Missense_Mutation p.N358D 0.13 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 4 38799508 38799508 C T TLR1 Silent p.P315P 0.44 TCGA-DU-6392-01 4 38930892 38930892 C T FAM114A1 Missense_Mutation p.R367C 0.49 deleterious(0.01) benign(0.368) TCGA-DU-6392-01 4 38995560 38995560 C A TMEM156 Missense_Mutation p.Q139H 0.43 deleterious(0.02) possibly_damaging(0.896) TCGA-DU-6392-01 4 39409299 39409299 C A KLB Missense_Mutation p.L244I 0.44 deleterious(0.05) probably_damaging(0.999) TCGA-DU-6392-01 4 39510268 39510268 C T UGDH Missense_Mutation p.S275N 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 39878617 39878617 G A PDS5A Nonsense_Mutation p.R717* 0.32 TCGA-DU-6392-01 4 39881439 39881439 A C PDS5A Missense_Mutation p.L634W 0.40 deleterious(0.02) possibly_damaging(0.905) TCGA-DU-6392-01 4 39924325 39924325 T C PDS5A Missense_Mutation p.M191V 0.25 deleterious(0.01) possibly_damaging(0.729) TCGA-DU-6392-01 4 40045275 40045275 G A RP11-333E13.4 RNA 0.39 TCGA-DU-6392-01 4 40108548 40108548 G A N4BP2 Missense_Mutation p.V468I 0.31 tolerated(0.69) benign(0.09) TCGA-DU-6392-01 4 40127926 40127926 T C N4BP2 Silent p.I1501I 0.10 TCGA-DU-6392-01 4 40133443 40133443 A G N4BP2 Missense_Mutation p.E1517G 0.33 deleterious(0.05) possibly_damaging(0.717) TCGA-DU-6392-01 4 40823961 40823961 C T APBB2 Missense_Mutation p.R680H 0.42 tolerated(0.74) benign(0.003) TCGA-DU-6392-01 4 40825774 40825774 T G APBB2 Missense_Mutation p.M607L 0.35 tolerated(0.05) benign(0.014) TCGA-DU-6392-01 4 41015610 41015610 C T APBB2 Silent p.P275P 0.07 TCGA-DU-6392-01 4 41015670 41015670 C T APBB2 Silent p.P255P 0.06 TCGA-DU-6392-01 4 41984211 41984211 G A DCAF4L1 Silent p.S134S 0.26 TCGA-DU-6392-01 4 420902 420902 A G ABCA11P Intron 0.40 TCGA-DU-6392-01 4 42119622 42119622 G A BEND4 Silent p.N506N 0.38 TCGA-DU-6392-01 4 42445621 42445621 C T ATP8A1 Silent p.L1028L 0.35 TCGA-DU-6392-01 4 4249452 4249452 G A TMEM128 5'UTR 0.33 TCGA-DU-6392-01 4 4269611 4269611 A G LYAR 3'UTR 0.10 TCGA-DU-6392-01 4 4303755 4303755 T C ZBTB49 Silent p.V64V 0.09 TCGA-DU-6392-01 4 4317620 4317620 C A ZBTB49 Missense_Mutation p.S515Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 437125 437125 A G ZNF721 Silent p.N377N 0.31 TCGA-DU-6392-01 4 438011 438011 T C ZNF721 Missense_Mutation p.Q82R 0.08 deleterious(0.04) benign(0.017) TCGA-DU-6392-01 4 44682469 44682469 C T GUF1 Silent p.D59D 0.22 TCGA-DU-6392-01 4 46043152 46043152 A G GABRG1 Silent p.C417C 0.09 TCGA-DU-6392-01 4 46060347 46060347 C A GABRG1 Missense_Mutation p.R268I 0.34 deleterious(0) possibly_damaging(0.701) TCGA-DU-6392-01 4 46067578 46067578 A - GABRG1 Frame_Shift_Del p.F115Lfs*10 0.52 TCGA-DU-6392-01 4 46737055 46737055 G A COX7B2 Missense_Mutation p.A52V 0.39 tolerated(0.47) benign(0.246) TCGA-DU-6392-01 4 46981050 46981050 T - GABRA4 Frame_Shift_Del p.M91Wfs*18 0.16 TCGA-DU-6392-01 4 47427785 47427785 C T GABRB1 Missense_Mutation p.A392V 0.51 tolerated(0.19) benign(0.014) TCGA-DU-6392-01 4 47427823 47427823 C T GABRB1 Missense_Mutation p.R405C 0.09 deleterious(0) benign(0.168) TCGA-DU-6392-01 4 47517672 47517672 C A ATP10D Missense_Mutation p.T157N 0.28 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 4 47537530 47537530 C T ATP10D Missense_Mutation p.H261Y 0.35 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6392-01 4 47548731 47548731 C T ATP10D Missense_Mutation p.P496L 0.37 tolerated(0.37) benign(0.002) TCGA-DU-6392-01 4 47548743 47548743 G A ATP10D Missense_Mutation p.S500N 0.42 tolerated(0.17) benign(0.021) TCGA-DU-6392-01 4 47593308 47593308 C A ATP10D Missense_Mutation p.N1397K 0.23 deleterious_low_confidence(0.02) benign(0.036) TCGA-DU-6392-01 4 47645223 47645223 G A CORIN Missense_Mutation p.R670C 0.09 deleterious(0) probably_damaging(0.967) TCGA-DU-6392-01 4 47857181 47857181 C T NFXL1 Splice_Site p.X773_splice 0.34 TCGA-DU-6392-01 4 47887941 47887941 C T NFXL1 Missense_Mutation p.G540D 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 47942779 47942779 C T CNGA1 Splice_Site p.X291_splice 0.39 TCGA-DU-6392-01 4 48088512 48088512 C A TXK Missense_Mutation p.E309D 0.07 tolerated(1) benign(0.001) TCGA-DU-6392-01 4 48091735 48091735 C T TXK Intron 0.25 TCGA-DU-6392-01 4 48230635 48230635 C T TEC 5'UTR 0.10 TCGA-DU-6392-01 4 48563643 48563643 G A FRYL Missense_Mutation p.P1236L 0.41 tolerated(0.2) benign(0.109) TCGA-DU-6392-01 4 48621374 48621374 G A FRYL Missense_Mutation p.R110C 0.50 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 4 4864565 4864565 G A MSX1 Missense_Mutation p.A203T 0.39 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 4 48834663 48834663 C T OCIAD1 Nonsense_Mutation p.R8* 0.38 TCGA-DU-6392-01 4 48859372 48859372 A - OCIAD1 Frame_Shift_Del p.E233Kfs*4 0.08 TCGA-DU-6392-01 4 49005809 49005809 G A CWH43 Missense_Mutation p.G287D 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 509771 509771 G A PIGG Missense_Mutation p.R304Q 0.06 tolerated(0.33) benign(0.124) TCGA-DU-6392-01 4 515627 515627 C T PIGG Missense_Mutation p.S504L 0.09 deleterious(0.02) benign(0.028) TCGA-DU-6392-01 4 52729856 52729856 C T DCUN1D4 Silent p.G39G 0.35 TCGA-DU-6392-01 4 52895891 52895891 C A SGCB Nonsense_Mutation p.G128* 0.42 TCGA-DU-6392-01 4 52927056 52927056 C T SPATA18 Missense_Mutation p.S101F 0.33 tolerated(0.69) benign(0.001) TCGA-DU-6392-01 4 53378 53378 G A ZNF595 5'UTR 0.06 TCGA-DU-6392-01 4 53494205 53494205 C T USP46 Silent p.A81A 0.34 TCGA-DU-6392-01 4 54011572 54011572 T G SCFD2 Missense_Mutation p.K497Q 0.42 tolerated(0.36) benign(0.054) TCGA-DU-6392-01 4 54362284 54362284 C T LNX1 Missense_Mutation p.R419Q 0.39 tolerated(0.53) probably_damaging(0.999) TCGA-DU-6392-01 4 54374161 54374161 C T LNX1 Missense_Mutation p.R205Q 0.31 tolerated(0.65) benign(0.014) TCGA-DU-6392-01 4 55156518 55156518 C T PDGFRA Silent p.D973D 0.27 TCGA-DU-6392-01 4 55161339 55161339 C T PDGFRA Missense_Mutation p.S1057F 0.40 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 55161379 55161379 C T PDGFRA Silent p.I1070I 0.36 TCGA-DU-6392-01 4 55593703 55593703 G A KIT Missense_Mutation p.S590N 0.43 tolerated(0.08) possibly_damaging(0.593) TCGA-DU-6392-01 4 55968162 55968162 G A KDR Missense_Mutation p.T723I 0.33 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 4 55976632 55976632 A G KDR Missense_Mutation p.V398A 0.35 deleterious(0) possibly_damaging(0.5) TCGA-DU-6392-01 4 56428578 56428578 C T PDCL2 Silent p.K188K 0.34 TCGA-DU-6392-01 4 56759926 56759926 A T EXOC1 Missense_Mutation p.R645W 0.12 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 4 56770609 56770609 T C EXOC1 Missense_Mutation p.F878S 0.47 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 56858237 56858237 G T CEP135 Missense_Mutation p.E665D 0.40 deleterious(0) possibly_damaging(0.761) TCGA-DU-6392-01 4 56877583 56877583 C A CEP135 Silent p.I837I 0.45 TCGA-DU-6392-01 4 56877605 56877605 G T CEP135 Missense_Mutation p.V845L 0.29 tolerated(1) benign(0.007) TCGA-DU-6392-01 4 57181518 57181518 C T KIAA1211 Missense_Mutation p.A617V 0.42 deleterious(0) possibly_damaging(0.695) TCGA-DU-6392-01 4 57181557 57181557 C T KIAA1211 Missense_Mutation p.A630V 0.29 tolerated(1) possibly_damaging(0.695) TCGA-DU-6392-01 4 57182325 57182325 C T KIAA1211 Missense_Mutation p.A886V 0.43 tolerated(0.22) benign(0) TCGA-DU-6392-01 4 5721083 5721083 G A EVC Missense_Mutation p.D95N 0.27 deleterious(0.01) possibly_damaging(0.726) TCGA-DU-6392-01 4 57215453 57215453 T C AASDH Missense_Mutation p.K822E 0.09 deleterious(0.03) benign(0.156) TCGA-DU-6392-01 4 57220284 57220284 C A AASDH Missense_Mutation p.G435V 0.33 deleterious(0.03) possibly_damaging(0.451) TCGA-DU-6392-01 4 57261676 57261676 C T PPAT Missense_Mutation p.V466I 0.43 tolerated(0.4) benign(0.003) TCGA-DU-6392-01 4 57267048 57267048 A C PPAT Missense_Mutation p.C306G 0.09 deleterious(0) possibly_damaging(0.538) TCGA-DU-6392-01 4 57325593 57325593 G T PAICS Missense_Mutation p.Q396H 0.16 benign(0.019) TCGA-DU-6392-01 4 57340537 57340537 A G SRP72 Missense_Mutation p.K197R 0.38 tolerated(0.05) benign(0.008) TCGA-DU-6392-01 4 57344544 57344544 G T SRP72 Splice_Site p.X215_splice 0.09 TCGA-DU-6392-01 4 57797637 57797637 T G REST Missense_Mutation p.N871K 0.40 tolerated_low_confidence(0.12) benign(0.026) TCGA-DU-6392-01 4 57797968 57797968 C T REST Missense_Mutation p.R982C 0.41 tolerated(0.18) benign(0) TCGA-DU-6392-01 4 57832852 57832852 C T NOA1 Silent p.V566V 0.41 TCGA-DU-6392-01 4 57887151 57887151 G A POLR2B Missense_Mutation p.G804S 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 5811321 5811321 C T EVC Missense_Mutation p.A922V 0.38 deleterious(0.03) benign(0.037) TCGA-DU-6392-01 4 5977631 5977631 G T C4orf50 Missense_Mutation p.L548M 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 6050601 6050601 G A JAKMIP1 Missense_Mutation p.L671F 0.09 deleterious(0) possibly_damaging(0.888) TCGA-DU-6392-01 4 6066610 6066610 G A JAKMIP1 Silent p.D476D 0.52 TCGA-DU-6392-01 4 6066711 6066712 - A JAKMIP1 Frame_Shift_Ins p.G443Wfs*3 0.26 TCGA-DU-6392-01 4 619547 619547 C T PDE6B Silent p.C44C 0.49 TCGA-DU-6392-01 4 62758588 62758588 C T LPHN3 Silent p.S497S 0.35 TCGA-DU-6392-01 4 62845404 62845404 C T LPHN3 Missense_Mutation p.R909C 0.34 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 4 6303631 6303631 C A WFS1 Silent p.R703R 0.33 TCGA-DU-6392-01 4 6304141 6304141 C T WFS1 Silent p.G873G 0.48 TCGA-DU-6392-01 4 6304188 6304188 C T WFS1 Missense_Mutation p.A889V 0.43 tolerated(0.08) benign(0.058) TCGA-DU-6392-01 4 6473900 6473900 G A PPP2R2C Silent p.S19S 0.34 TCGA-DU-6392-01 4 6473947 6473947 C T PPP2R2C Missense_Mutation p.D4N 0.29 deleterious_low_confidence(0.01) benign(0.127) TCGA-DU-6392-01 4 651256 651256 C T PDE6B Silent p.C458C 0.31 TCGA-DU-6392-01 4 652779 652779 C T PDE6B Silent p.C480C 0.26 TCGA-DU-6392-01 4 656910 656910 G A PDE6B Silent p.K618K 0.09 TCGA-DU-6392-01 4 6588806 6588806 A T MAN2B2 Missense_Mutation p.T159S 0.09 deleterious(0.03) possibly_damaging(0.859) TCGA-DU-6392-01 4 6588879 6588879 C A MAN2B2 Missense_Mutation p.A183D 0.21 tolerated(0.46) benign(0.044) TCGA-DU-6392-01 4 6595014 6595014 C A MAN2B2 Silent p.A265A 0.39 TCGA-DU-6392-01 4 66201670 66201670 C T EPHA5 Silent p.T944T 0.28 TCGA-DU-6392-01 4 68379857 68379857 C T CENPC Missense_Mutation p.R460K 0.33 tolerated(0.22) benign(0.002) TCGA-DU-6392-01 4 68543398 68543398 G A UBA6 Silent p.Y132Y 0.45 TCGA-DU-6392-01 4 68619905 68619905 G A GNRHR Missense_Mutation p.A50V 0.40 deleterious(0.04) benign(0.005) TCGA-DU-6392-01 4 6864544 6864544 A G KIAA0232 Missense_Mutation p.N812S 0.10 tolerated_low_confidence(0.89) benign(0) TCGA-DU-6392-01 4 68687902 68687902 G T TMPRSS11D 3'UTR 0.13 TCGA-DU-6392-01 4 68928585 68928585 G A TMPRSS11F Intron 0.38 TCGA-DU-6392-01 4 69535723 69535723 T C UGT2B15 Missense_Mutation p.Q205R 0.20 tolerated(0.47) benign(0.029) TCGA-DU-6392-01 4 69682430 69682430 G T UGT2B10 Missense_Mutation p.W231C 0.33 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 4 69795536 69795536 C T UGT2A3 Missense_Mutation p.E527K 0.30 tolerated(0.08) benign(0.048) TCGA-DU-6392-01 4 69796420 69796420 T C UGT2A3 Missense_Mutation p.Y383C 0.17 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 4 7002978 7002978 G A TBC1D14 Missense_Mutation p.E424K 0.18 deleterious(0) possibly_damaging(0.812) TCGA-DU-6392-01 4 7026800 7026800 C T TBC1D14 Silent p.R609R 0.36 TCGA-DU-6392-01 4 70361049 70361049 G A UGT2B4 Silent p.G177G 0.39 TCGA-DU-6392-01 4 70361517 70361517 C T UGT2B4 Silent p.G21G 0.35 TCGA-DU-6392-01 4 70512749 70512749 G T UGT2A1 Missense_Mutation p.S205Y 0.09 deleterious(0) probably_damaging(0.968) TCGA-DU-6392-01 4 70512785 70512785 A G UGT2A1 Missense_Mutation p.V193A 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-DU-6392-01 4 70512793 70512793 A C UGT2A1 Silent p.P190P 0.11 TCGA-DU-6392-01 4 7056173 7056173 C T TADA2B Missense_Mutation p.R219W 0.29 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 4 70596338 70596338 A C SULT1B1 Missense_Mutation p.I220S 0.14 deleterious(0.01) benign(0.014) TCGA-DU-6392-01 4 70599226 70599226 C A SULT1B1 Splice_Site p.X168_splice 0.38 TCGA-DU-6392-01 4 70810694 70810695 - A CSN1S1 Frame_Shift_Ins p.N179Kfs*2 0.35 TCGA-DU-6392-01 4 71110547 71110547 T A CSN3 Missense_Mutation p.F4Y 0.13 deleterious(0.01) benign(0.153) TCGA-DU-6392-01 4 71339760 71339760 G A MUC7 Missense_Mutation p.V8M 0.22 deleterious(0.01) probably_damaging(0.972) TCGA-DU-6392-01 4 71507838 71507838 C T ENAM Missense_Mutation p.P232L 0.44 deleterious(0.01) possibly_damaging(0.525) TCGA-DU-6392-01 4 71650590 71650590 A G RUFY3 Silent p.L355L 0.18 TCGA-DU-6392-01 4 72204942 72204942 G A SLC4A4 Intron 0.36 TCGA-DU-6392-01 4 72306478 72306478 C A SLC4A4 Missense_Mutation p.P318H 0.10 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 4 72332189 72332189 C T SLC4A4 Missense_Mutation p.A509V 0.07 deleterious(0.02) possibly_damaging(0.558) TCGA-DU-6392-01 4 72338462 72338462 T C SLC4A4 Missense_Mutation p.W560R 0.42 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 4 72338541 72338541 A G SLC4A4 Missense_Mutation p.E586G 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 72338701 72338701 G A SLC4A4 Intron 0.31 TCGA-DU-6392-01 4 72412185 72412185 G A SLC4A4 Missense_Mutation p.S854N 0.38 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 4 72631303 72631303 C A GC Missense_Mutation p.G126C 0.13 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 4 72897732 72897732 G A NPFFR2 Silent p.Q38Q 0.41 TCGA-DU-6392-01 4 73179425 73179425 G A ADAMTS3 Missense_Mutation p.R572C 0.42 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 4 73931073 73931073 G A COX18 Silent p.N164N 0.33 TCGA-DU-6392-01 4 73964217 73964217 C A ANKRD17 Nonsense_Mutation p.E1532* 0.11 TCGA-DU-6392-01 4 74284028 74284028 C T ALB Missense_Mutation p.T551I 0.42 tolerated(0.21) benign(0.029) TCGA-DU-6392-01 4 74351700 74351700 C A AFM Missense_Mutation p.S131Y 0.45 deleterious(0) possibly_damaging(0.544) TCGA-DU-6392-01 4 7436108 7436108 C T PSAPL1 Missense_Mutation p.A167T 0.46 tolerated(0.08) benign(0.005) TCGA-DU-6392-01 4 74368797 74368797 C T AFM 3'UTR 0.26 TCGA-DU-6392-01 4 75231047 75231047 G A EREG Missense_Mutation p.E8K 0.28 tolerated_low_confidence(0.2) benign(0.073) TCGA-DU-6392-01 4 75314872 75314872 G T AREG Missense_Mutation p.R140I 0.47 deleterious(0) possibly_damaging(0.807) TCGA-DU-6392-01 4 75938264 75938264 G A PARM1 Missense_Mutation p.V225M 0.11 tolerated(0.06) possibly_damaging(0.655) TCGA-DU-6392-01 4 76434492 76434492 G A RCHY1 Silent p.D35D 0.25 TCGA-DU-6392-01 4 76447088 76447088 C A THAP6 Intron 0.31 TCGA-DU-6392-01 4 76452331 76452331 T C THAP6 Silent p.D192D 0.10 TCGA-DU-6392-01 4 76452483 76452483 T A THAP6 3'UTR 0.40 TCGA-DU-6392-01 4 76570838 76570838 T - G3BP2 Frame_Shift_Del p.T409Qfs*37 0.16 TCGA-DU-6392-01 4 76695832 76695832 G A USO1 Missense_Mutation p.V189I 0.11 tolerated(0.11) benign(0.092) TCGA-DU-6392-01 4 76730167 76730167 C T USO1 Missense_Mutation p.T822I 0.60 tolerated(0.17) benign(0.005) TCGA-DU-6392-01 4 76842225 76842225 T G NAAA Missense_Mutation p.T240P 0.11 deleterious(0.04) benign(0.334) TCGA-DU-6392-01 4 76857232 76857233 - T NAAA Intron 0.30 TCGA-DU-6392-01 4 77033727 77033727 A G ART3 3'UTR 0.49 TCGA-DU-6392-01 4 77091087 77091087 A C SCARB2 Missense_Mutation p.F349C 0.35 deleterious(0) possibly_damaging(0.895) TCGA-DU-6392-01 4 7714488 7714488 G A SORCS2 Missense_Mutation p.D633N 0.15 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 77305273 77305273 C A CCDC158 Nonsense_Mutation p.E232* 0.37 TCGA-DU-6392-01 4 77700012 77700012 C A SHROOM3 Silent p.A1891A 0.23 TCGA-DU-6392-01 4 77817433 77817433 G A SOWAHB Missense_Mutation p.R524W 0.48 deleterious(0) possibly_damaging(0.689) TCGA-DU-6392-01 4 7844934 7844934 G T AFAP1 Missense_Mutation p.L160M 0.48 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 4 78647395 78647395 T C CNOT6L Missense_Mutation p.T461A 0.10 tolerated(0.26) possibly_damaging(0.824) TCGA-DU-6392-01 4 78695850 78695850 T C CNOT6L Missense_Mutation p.T50A 0.50 tolerated(0.08) benign(0.002) TCGA-DU-6392-01 4 78804490 78804490 G A MRPL1 Missense_Mutation p.G80S 0.38 tolerated(1) benign(0.07) TCGA-DU-6392-01 4 79434660 79434660 C T FRAS1 Silent p.H3376H 0.42 TCGA-DU-6392-01 4 79443853 79443853 T C FRAS1 Silent p.L3567L 0.56 TCGA-DU-6392-01 4 79443936 79443936 C T FRAS1 Silent p.L3594L 0.22 TCGA-DU-6392-01 4 79522708 79522708 C T ANXA3 Missense_Mutation p.H259Y 0.34 tolerated(1) benign(0.003) TCGA-DU-6392-01 4 7986584 7986584 C T ABLIM2 Missense_Mutation p.A573T 0.40 tolerated(0.15) benign(0.05) TCGA-DU-6392-01 4 7994606 7994606 C T ABLIM2 Missense_Mutation p.G556D 0.25 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 4 81124712 81124712 G A PRDM8 3'UTR 0.30 TCGA-DU-6392-01 4 81188215 81188215 C A FGF5 Missense_Mutation p.F79L 0.34 tolerated(0.41) probably_damaging(0.952) TCGA-DU-6392-01 4 81866076 81866076 C A C4orf22 Missense_Mutation p.L214I 0.21 tolerated(1) benign(0.016) TCGA-DU-6392-01 4 81967180 81967180 T C BMP3 Missense_Mutation p.I202T 0.11 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 4 8218777 8218778 - T SH3TC1 Frame_Shift_Ins p.A243Gfs*42 0.21 TCGA-DU-6392-01 4 8229811 8229811 G A SH3TC1 Missense_Mutation p.S797N 0.30 deleterious(0.02) possibly_damaging(0.897) TCGA-DU-6392-01 4 8233806 8233806 C T SH3TC1 Silent p.C1018C 0.46 TCGA-DU-6392-01 4 82369301 82369301 T C RASGEF1B Silent p.P192P 0.29 TCGA-DU-6392-01 4 83279883 83279883 T - HNRNPD Frame_Shift_Del p.I184Ffs*15 0.17 TCGA-DU-6392-01 4 83347637 83347637 G A HNRNPDL Nonsense_Mutation p.Q391* 0.29 TCGA-DU-6392-01 4 83406871 83406871 G A TMEM150C Silent p.Y181Y 0.33 TCGA-DU-6392-01 4 83557907 83557907 T C SCD5 Silent p.G213G 0.18 TCGA-DU-6392-01 4 83826058 83826058 G A THAP9 Missense_Mutation p.A84T 0.37 tolerated(0.09) benign(0.242) TCGA-DU-6392-01 4 83828938 83828938 A G THAP9 Missense_Mutation p.D194G 0.26 tolerated(0.11) possibly_damaging(0.601) TCGA-DU-6392-01 4 83838258 83838258 G T THAP9 Missense_Mutation p.S298I 0.32 tolerated(0.07) benign(0.049) TCGA-DU-6392-01 4 83905840 83905840 G T LIN54 Missense_Mutation p.T53N 0.48 tolerated_low_confidence(0.11) benign(0.001) TCGA-DU-6392-01 4 83905871 83905871 C T LIN54 Missense_Mutation p.E43K 0.35 deleterious_low_confidence(0.03) benign(0.146) TCGA-DU-6392-01 4 83971034 83971034 G A COPS4 Missense_Mutation p.V103I 0.39 tolerated(0.08) benign(0.117) TCGA-DU-6392-01 4 83984237 83984237 C T COPS4 Missense_Mutation p.R242C 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 83984281 83984281 G A COPS4 Silent p.Q256Q 0.36 TCGA-DU-6392-01 4 8407741 8407741 C T ACOX3 Missense_Mutation p.M239I 0.40 tolerated(0.07) benign(0.027) TCGA-DU-6392-01 4 8418133 8418133 G A ACOX3 Missense_Mutation p.T39M 0.26 deleterious(0.05) benign(0.001) TCGA-DU-6392-01 4 84216533 84216533 A - HPSE Frame_Shift_Del p.F532Lfs*2 0.11 TCGA-DU-6392-01 4 84227394 84227394 T C HPSE Missense_Mutation p.N390D 0.47 tolerated(0.17) benign(0.003) TCGA-DU-6392-01 4 84379555 84379555 A C MRPS18C Silent p.G69G 0.32 TCGA-DU-6392-01 4 84383731 84383731 G T FAM175A Missense_Mutation p.T374N 0.37 tolerated_low_confidence(0.3) benign(0.017) TCGA-DU-6392-01 4 84383808 84383808 G T FAM175A Silent p.A348A 0.06 TCGA-DU-6392-01 4 84465730 84465730 G A AGPAT9 Silent p.S61S 0.40 TCGA-DU-6392-01 4 845717 845717 G A GAK Missense_Mutation p.A1110V 0.29 tolerated(0.12) benign(0.005) TCGA-DU-6392-01 4 85560115 85560115 T A CDS1 Silent p.G283G 0.27 TCGA-DU-6392-01 4 85612936 85612936 G A WDFY3 Missense_Mutation p.L3018F 0.31 deleterious(0.01) probably_damaging(0.954) TCGA-DU-6392-01 4 85626601 85626601 C A WDFY3 Missense_Mutation p.D2761Y 0.08 deleterious(0.02) benign(0.363) TCGA-DU-6392-01 4 85719252 85719253 - A WDFY3 Frame_Shift_Ins p.L944Ffs*21 0.31 TCGA-DU-6392-01 4 8608505 8608505 G A CPZ Silent p.A316A 0.39 TCGA-DU-6392-01 4 8609139 8609139 C T CPZ Missense_Mutation p.T405M 0.19 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 4 8616085 8616085 G T CPZ Splice_Site p.X455_splice 0.28 TCGA-DU-6392-01 4 8621238 8621238 C T CPZ Missense_Mutation p.P618L 0.10 tolerated(0.11) benign(0.382) TCGA-DU-6392-01 4 864679 864679 C T GAK Missense_Mutation p.A690T 0.36 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 4 86921845 86921845 C T ARHGAP24 Silent p.T739T 0.14 TCGA-DU-6392-01 4 87028381 87028381 T C MAPK10 Missense_Mutation p.K121E 0.31 tolerated(0.84) possibly_damaging(0.486) TCGA-DU-6392-01 4 87728910 87728911 - A PTPN13 Frame_Shift_Ins p.I2322Nfs*42 0.32 TCGA-DU-6392-01 4 87745020 87745020 G A SLC10A6 Missense_Mutation p.H319Y 0.10 tolerated(0.32) benign(0.003) TCGA-DU-6392-01 4 87752964 87752964 T C SLC10A6 Missense_Mutation p.Q189R 0.43 deleterious(0.05) possibly_damaging(0.877) TCGA-DU-6392-01 4 87769930 87769930 G A SLC10A6 Silent p.N113N 0.07 TCGA-DU-6392-01 4 88036337 88036337 C T AFF1 Silent p.P784P 0.31 TCGA-DU-6392-01 4 88238285 88238285 T C HSD17B13 Missense_Mutation p.I137V 0.12 tolerated(0.29) possibly_damaging(0.551) TCGA-DU-6392-01 4 88258453 88258453 A G HSD17B11 Missense_Mutation p.I293T 0.32 tolerated(0.07) benign(0.394) TCGA-DU-6392-01 4 88278558 88278558 A G HSD17B11 Missense_Mutation p.F190L 0.24 deleterious(0) probably_damaging(0.925) TCGA-DU-6392-01 4 88412805 88412805 G A SPARCL1 Missense_Mutation p.T419M 0.37 tolerated(0.13) benign(0.014) TCGA-DU-6392-01 4 88766237 88766237 T C MEPE Missense_Mutation p.S73P 0.40 tolerated(0.18) probably_damaging(0.927) TCGA-DU-6392-01 4 88957479 88957479 C A PKD2 Missense_Mutation p.L273M 0.27 tolerated(0.15) probably_damaging(0.996) TCGA-DU-6392-01 4 89199408 89199408 G A PPM1K Missense_Mutation p.R110W 0.27 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 4 89319298 89319298 C T HERC6 Silent p.F343F 0.29 TCGA-DU-6392-01 4 89410380 89410380 G A HERC5 Missense_Mutation p.A676T 0.41 tolerated(0.24) benign(0.007) TCGA-DU-6392-01 4 89425652 89425652 C T HERC5 Missense_Mutation p.R925C 0.36 tolerated(0.08) benign(0.004) TCGA-DU-6392-01 4 89577217 89577217 T C HERC3 Intron 0.34 TCGA-DU-6392-01 4 89599166 89599166 G A HERC3 Missense_Mutation p.E693K 0.38 tolerated(0.53) possibly_damaging(0.64) TCGA-DU-6392-01 4 89827531 89827531 T C FAM13A Missense_Mutation p.K281R 0.04 tolerated(0.23) benign(0.001) TCGA-DU-6392-01 4 90833185 90833185 G A MMRN1 Silent p.P278P 0.33 TCGA-DU-6392-01 4 91230488 91230488 A G CCSER1 Silent p.Q351Q 0.17 TCGA-DU-6392-01 4 94032058 94032058 C T GRID2 Missense_Mutation p.A230V 0.30 tolerated(0.34) probably_damaging(0.957) TCGA-DU-6392-01 4 94693399 94693399 C T GRID2 Missense_Mutation p.T925I 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.889) TCGA-DU-6392-01 4 94693538 94693538 T C GRID2 Silent p.N971N 0.10 TCGA-DU-6392-01 4 95147396 95147396 G A SMARCAD1 Missense_Mutation p.C106Y 0.35 tolerated_low_confidence(1) benign(0.053) TCGA-DU-6392-01 4 95173878 95173878 T C SMARCAD1 Missense_Mutation p.M334T 0.27 tolerated(0.5) benign(0.001) TCGA-DU-6392-01 4 95185933 95185933 G A SMARCAD1 Missense_Mutation p.D453N 0.44 tolerated(0.17) benign(0.022) TCGA-DU-6392-01 4 95210632 95210632 G T SMARCAD1 Missense_Mutation p.G1012W 0.06 deleterious(0) probably_damaging(0.958) TCGA-DU-6392-01 4 95255669 95255669 C T HPGDS Missense_Mutation p.D38N 0.38 deleterious(0.05) benign(0.049) TCGA-DU-6392-01 4 955517 955517 C A DGKQ Missense_Mutation p.E807D 0.12 tolerated(0.38) benign(0.02) TCGA-DU-6392-01 4 96222898 96222898 G A UNC5C Missense_Mutation p.L117F 0.22 deleterious(0) possibly_damaging(0.866) TCGA-DU-6392-01 4 96761689 96761689 C T PDHA2 Nonsense_Mutation p.R130* 0.24 TCGA-DU-6392-01 4 96761711 96761711 C T PDHA2 Missense_Mutation p.T137M 0.32 tolerated(0.26) possibly_damaging(0.685) TCGA-DU-6392-01 4 9784208 9784208 G A DRD5 Silent p.A185A 0.27 TCGA-DU-6392-01 4 98865063 98865063 C A STPG2 Missense_Mutation p.M343I 0.28 tolerated(0.4) benign(0) TCGA-DU-6392-01 4 99055575 99055575 C A STPG2 Nonsense_Mutation p.E49* 0.08 TCGA-DU-6392-01 4 99812406 99812406 G T EIF4E Missense_Mutation p.T68N 0.43 deleterious(0.01) benign(0.444) TCGA-DU-6392-01 5 101585411 101585411 T C SLCO4C1 Silent p.G517G 0.12 TCGA-DU-6392-01 5 101592827 101592827 T C SLCO4C1 Silent p.S487S 0.28 TCGA-DU-6392-01 5 101593758 101593758 C A SLCO4C1 Missense_Mutation p.V388F 0.12 deleterious(0) possibly_damaging(0.835) TCGA-DU-6392-01 5 101748843 101748843 C A SLCO6A1 Missense_Mutation p.G493W 0.17 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 101834634 101834634 C T SLCO6A1 5'UTR 0.36 TCGA-DU-6392-01 5 10227731 10227731 C T FAM173B Missense_Mutation p.R175H 0.31 tolerated(0.12) benign(0.002) TCGA-DU-6392-01 5 102296885 102296885 C T PAM Missense_Mutation p.P372S 0.24 tolerated(1) benign(0.073) TCGA-DU-6392-01 5 102309948 102309949 - A PAM Frame_Shift_Ins p.D434Gfs*6 0.26 TCGA-DU-6392-01 5 102474096 102474096 T A PPIP5K2 Missense_Mutation p.V137E 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 102503964 102503964 C T PPIP5K2 Missense_Mutation p.L751F 0.36 deleterious(0.03) benign(0.067) TCGA-DU-6392-01 5 102522049 102522049 C A PPIP5K2 Silent p.T1066T 0.58 TCGA-DU-6392-01 5 10254886 10254886 G A CCT5 Silent p.K89K 0.41 TCGA-DU-6392-01 5 10262654 10262654 G A CCT5 Missense_Mutation p.R414H 0.35 deleterious(0.01) benign(0.02) TCGA-DU-6392-01 5 102894605 102894605 A G NUDT12 Silent p.L257L 0.21 TCGA-DU-6392-01 5 10387155 10387155 G A MARCH6 Silent p.T128T 0.46 TCGA-DU-6392-01 5 10411624 10411624 G A MARCH6 Missense_Mutation p.R624H 0.36 tolerated(0.21) benign(0.001) TCGA-DU-6392-01 5 1053494 1053494 G A SLC12A7 Missense_Mutation p.P1044S 0.31 deleterious(0.01) possibly_damaging(0.902) TCGA-DU-6392-01 5 1064315 1064315 G A SLC12A7 Silent p.N830N 0.32 TCGA-DU-6392-01 5 1065545 1065545 G A SLC12A7 Silent p.L764L 0.47 TCGA-DU-6392-01 5 106722938 106722938 G A EFNA5 Missense_Mutation p.A188V 0.41 tolerated(0.24) benign(0.196) TCGA-DU-6392-01 5 107216719 107216719 C T FBXL17 Intron 0.34 TCGA-DU-6392-01 5 108134082 108134082 G A FER Missense_Mutation p.V67I 0.35 tolerated(0.76) probably_damaging(0.997) TCGA-DU-6392-01 5 1083924 1083924 G T SLC12A7 Nonsense_Mutation p.Y355* 0.35 TCGA-DU-6392-01 5 109117137 109117137 A G MAN2A1 Missense_Mutation p.D472G 0.09 tolerated(0.33) benign(0.257) TCGA-DU-6392-01 5 109159458 109159458 T C MAN2A1 Missense_Mutation p.V829A 0.38 deleterious(0.01) possibly_damaging(0.672) TCGA-DU-6392-01 5 109183481 109183481 C T MAN2A1 Missense_Mutation p.A989V 0.33 tolerated(0.42) benign(0.003) TCGA-DU-6392-01 5 1093734 1093734 G A SLC12A7 Missense_Mutation p.L86F 0.32 deleterious(0.04) probably_damaging(0.992) TCGA-DU-6392-01 5 110092436 110092436 G A SLC25A46 Missense_Mutation p.A219T 0.33 deleterious(0) possibly_damaging(0.591) TCGA-DU-6392-01 5 110428061 110428061 C T WDR36 Silent p.L25L 0.37 TCGA-DU-6392-01 5 110441018 110441018 T G WDR36 Missense_Mutation p.F407C 0.08 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 5 110448783 110448783 C A WDR36 Missense_Mutation p.P632H 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-DU-6392-01 5 110461365 110461365 C T WDR36 Nonsense_Mutation p.R860* 0.49 TCGA-DU-6392-01 5 110784900 110784900 C T CAMK4 Silent p.C208C 0.19 TCGA-DU-6392-01 5 110819737 110819737 C T CAMK4 Missense_Mutation p.A332V 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-DU-6392-01 5 111595639 111595639 G A EPB41L4A Missense_Mutation p.P227L 0.39 deleterious(0.02) benign(0.408) TCGA-DU-6392-01 5 111643154 111643154 C T EPB41L4A Missense_Mutation p.V45I 0.41 deleterious(0.04) benign(0.196) TCGA-DU-6392-01 5 112173300 112173300 A C APC Missense_Mutation p.K670T 0.30 possibly_damaging(0.483) TCGA-DU-6392-01 5 112176148 112176148 A G APC Silent p.P1619P 0.08 TCGA-DU-6392-01 5 112228017 112228017 C T ZRSR1 Silent p.D227D 0.36 TCGA-DU-6392-01 5 11236855 11236855 G A CTNND2 Missense_Mutation p.A570V 0.35 deleterious(0) probably_damaging(0.963) TCGA-DU-6392-01 5 112406886 112406886 G T MCC Silent p.T610T 0.09 TCGA-DU-6392-01 5 112406897 112406897 G T MCC Missense_Mutation p.L607M 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-DU-6392-01 5 112418619 112418619 G A MCC Silent p.H574H 0.36 TCGA-DU-6392-01 5 112927863 112927863 C T YTHDC2 Silent p.S1400S 0.38 TCGA-DU-6392-01 5 11364911 11364911 G T CTNND2 Silent p.I423I 0.12 TCGA-DU-6392-01 5 114573601 114573601 C A PGGT1B Nonsense_Mutation p.E145* 0.10 TCGA-DU-6392-01 5 114604589 114604589 T C CCDC112 Missense_Mutation p.I513V 0.09 tolerated(0.14) possibly_damaging(0.45) TCGA-DU-6392-01 5 114860793 114860793 G A FEM1C Nonsense_Mutation p.R356* 0.39 TCGA-DU-6392-01 5 115329463 115329463 A T AQPEP Missense_Mutation p.N429I 0.35 deleterious(0.03) possibly_damaging(0.774) TCGA-DU-6392-01 5 115350196 115350196 G A AQPEP Missense_Mutation p.A808T 0.45 tolerated(0.86) benign(0.003) TCGA-DU-6392-01 5 115783357 115783357 G A SEMA6A Missense_Mutation p.A682V 0.42 tolerated(0.06) benign(0.027) TCGA-DU-6392-01 5 115837950 115837950 G A SEMA6A Silent p.I58I 0.44 TCGA-DU-6392-01 5 118264322 118264322 A G DTWD2 Silent p.V169V 0.08 TCGA-DU-6392-01 5 118484689 118484689 G A DMXL1 Missense_Mutation p.R1056H 0.38 deleterious(0) probably_damaging(0.97) TCGA-DU-6392-01 5 118484954 118484954 G A DMXL1 Nonsense_Mutation p.W1144* 0.33 TCGA-DU-6392-01 5 118500881 118500881 G T DMXL1 Missense_Mutation p.A1626S 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 118500926 118500927 - T DMXL1 Frame_Shift_Ins p.Y1643Lfs*15 0.32 TCGA-DU-6392-01 5 118500956 118500956 G A DMXL1 Missense_Mutation p.V1651M 0.30 deleterious(0) probably_damaging(0.945) TCGA-DU-6392-01 5 118502316 118502316 A - DMXL1 Frame_Shift_Del p.N1661Tfs*4 0.29 TCGA-DU-6392-01 5 118503347 118503347 G A DMXL1 Missense_Mutation p.R1729K 0.28 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 118506838 118506839 - A DMXL1 Frame_Shift_Ins p.R2120Kfs*16 0.29 TCGA-DU-6392-01 5 118556191 118556191 G A DMXL1 Missense_Mutation p.A2659T 0.38 deleterious(0) probably_damaging(0.915) TCGA-DU-6392-01 5 118556656 118556656 A G DMXL1 Missense_Mutation p.I2698M 0.33 deleterious(0) benign(0.395) TCGA-DU-6392-01 5 121487888 121487888 T C ZNF474 Missense_Mutation p.L68P 0.09 deleterious(0) probably_damaging(0.935) TCGA-DU-6392-01 5 122365005 122365005 C A PPIC Nonsense_Mutation p.G76* 0.34 TCGA-DU-6392-01 5 122718703 122718703 T C CEP120 Missense_Mutation p.I613V 0.39 tolerated(1) benign(0.001) TCGA-DU-6392-01 5 122950078 122950078 G A CSNK1G3 Silent p.Q452Q 0.16 TCGA-DU-6392-01 5 1235772 1235772 G T SLC6A18 Missense_Mutation p.G206W 0.30 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 123982844 123982844 A G ZNF608 Missense_Mutation p.L1078P 0.37 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 123983871 123983871 G A ZNF608 Missense_Mutation p.R736W 0.37 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 5 124080282 124080282 C T ZNF608 Missense_Mutation p.G134D 0.44 deleterious(0) probably_damaging(0.944) TCGA-DU-6392-01 5 125894979 125894979 C T ALDH7A1 Missense_Mutation p.A321T 0.44 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 5 125939420 125939420 G T PHAX Missense_Mutation p.Q85H 0.09 deleterious(0.01) probably_damaging(0.962) TCGA-DU-6392-01 5 125939431 125939431 A G PHAX Missense_Mutation p.N89S 0.06 tolerated(0.11) benign(0.015) TCGA-DU-6392-01 5 125967480 125967480 C A C5orf48 Nonsense_Mutation p.C18* 0.31 TCGA-DU-6392-01 5 125967491 125967491 G T C5orf48 Missense_Mutation p.S22I 0.28 deleterious_low_confidence(0.01) benign(0.165) TCGA-DU-6392-01 5 126674846 126674846 C A MEGF10 Missense_Mutation p.P51T 0.10 deleterious(0) benign(0.412) TCGA-DU-6392-01 5 126676323 126676323 G A MEGF10 Splice_Site p.X107_splice 0.38 TCGA-DU-6392-01 5 126781197 126781197 C A MEGF10 Missense_Mutation p.T847N 0.36 tolerated(0.07) benign(0.244) TCGA-DU-6392-01 5 127466827 127466827 G A SLC12A2 Missense_Mutation p.A373T 0.37 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 5 127466839 127466839 G A SLC12A2 Missense_Mutation p.A377T 0.06 deleterious(0.04) probably_damaging(0.997) TCGA-DU-6392-01 5 127503458 127503458 T C SLC12A2 Silent p.A874A 0.34 TCGA-DU-6392-01 5 127516592 127516592 C T SLC12A2 Missense_Mutation p.P1040S 0.31 deleterious(0) possibly_damaging(0.881) TCGA-DU-6392-01 5 127522440 127522440 T C SLC12A2 3'UTR 0.28 TCGA-DU-6392-01 5 127599171 127599171 G A FBN2 Missense_Mutation p.T2713M 0.38 deleterious(0.04) probably_damaging(0.958) TCGA-DU-6392-01 5 127610311 127610311 C - FBN2 Frame_Shift_Del p.F2554Lfs*57 0.28 TCGA-DU-6392-01 5 127641519 127641519 A G FBN2 Silent p.C1848C 0.09 TCGA-DU-6392-01 5 127674749 127674749 G A FBN2 Silent p.I1116I 0.43 TCGA-DU-6392-01 5 127680187 127680187 T C FBN2 Missense_Mutation p.K1078R 0.15 tolerated(0.19) benign(0.38) TCGA-DU-6392-01 5 127702084 127702084 G A FBN2 Missense_Mutation p.T763I 0.34 deleterious(0) possibly_damaging(0.613) TCGA-DU-6392-01 5 127744372 127744372 C T FBN2 Missense_Mutation p.C358Y 0.39 deleterious(0) probably_damaging(0.939) TCGA-DU-6392-01 5 128365298 128365298 T C SLC27A6 Silent p.S527S 0.32 TCGA-DU-6392-01 5 129070634 129070634 A G ADAMTS19 Missense_Mutation p.T1102A 0.49 deleterious(0.01) possibly_damaging(0.823) TCGA-DU-6392-01 5 129241270 129241270 T C CHSY3 Missense_Mutation p.Y250H 0.07 deleterious(0.02) possibly_damaging(0.834) TCGA-DU-6392-01 5 129520135 129520135 C T CHSY3 Missense_Mutation p.L434F 0.17 tolerated(0.06) possibly_damaging(0.793) TCGA-DU-6392-01 5 129521469 129521469 T C CHSY3 Silent p.N878N 0.45 TCGA-DU-6392-01 5 130695031 130695031 G A CDC42SE2 5'UTR 0.44 TCGA-DU-6392-01 5 130769276 130769276 C A RAPGEF6 Missense_Mutation p.S1282I 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-6392-01 5 130799818 130799818 G A RAPGEF6 Missense_Mutation p.S799F 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 130815253 130815253 C T RAPGEF6 Silent p.K678K 0.38 TCGA-DU-6392-01 5 130815437 130815437 T C RAPGEF6 Missense_Mutation p.E617G 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-DU-6392-01 5 130840390 130840390 C A RAPGEF6 Nonsense_Mutation p.E395* 0.27 TCGA-DU-6392-01 5 131008547 131008547 G A FNIP1 Silent p.D530D 0.08 TCGA-DU-6392-01 5 131014841 131014841 C T FNIP1 Missense_Mutation p.M410I 0.36 deleterious(0.04) probably_damaging(0.98) TCGA-DU-6392-01 5 131039847 131039847 C A FNIP1 Missense_Mutation p.D343Y 0.31 deleterious(0) possibly_damaging(0.741) TCGA-DU-6392-01 5 131554263 131554263 C T P4HA2 Silent p.V19V 0.21 TCGA-DU-6392-01 5 131647727 131647727 A G SLC22A4 Intron 0.52 TCGA-DU-6392-01 5 131796479 131796479 G A C5orf56 Missense_Mutation p.C105Y 0.58 deleterious_low_confidence(0.04) possibly_damaging(0.588) TCGA-DU-6392-01 5 131819745 131819745 C A IRF1 Missense_Mutation p.Q292H 0.32 tolerated(0.29) benign(0) TCGA-DU-6392-01 5 131820178 131820178 C A IRF1 Missense_Mutation p.Q243H 0.33 tolerated(0.18) possibly_damaging(0.864) TCGA-DU-6392-01 5 131822515 131822515 C T IRF1 Missense_Mutation p.R129Q 0.32 deleterious(0.04) benign(0.005) TCGA-DU-6392-01 5 131823680 131823680 G A IRF1 Missense_Mutation p.A42V 0.12 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 5 131953826 131953826 C T RAD50 Nonsense_Mutation p.R1077* 0.33 TCGA-DU-6392-01 5 132034985 132034985 G T KIF3A Silent p.P643P 0.09 TCGA-DU-6392-01 5 132038596 132038596 C A KIF3A Missense_Mutation p.R516I 0.06 deleterious(0.01) benign(0.024) TCGA-DU-6392-01 5 132099458 132099458 C T SEPT8 Silent p.T158T 0.34 TCGA-DU-6392-01 5 132159124 132159124 G A SHROOM1 Missense_Mutation p.R682C 0.65 tolerated(0.14) benign(0.146) TCGA-DU-6392-01 5 132197653 132197653 G T GDF9 Silent p.P331P 0.10 TCGA-DU-6392-01 5 132197655 132197655 G A GDF9 Missense_Mutation p.P331S 0.15 tolerated(0.22) benign(0.009) TCGA-DU-6392-01 5 132198025 132198025 C T GDF9 Silent p.K207K 0.33 TCGA-DU-6392-01 5 132227738 132227738 G T AFF4 Intron 0.33 TCGA-DU-6392-01 5 132232115 132232115 G A AFF4 Missense_Mutation p.P736L 0.44 deleterious(0.02) benign(0.001) TCGA-DU-6392-01 5 132406144 132406144 G A HSPA4 Missense_Mutation p.A129T 0.34 tolerated(0.14) probably_damaging(1) TCGA-DU-6392-01 5 132424247 132424247 G T HSPA4 Missense_Mutation p.Q379H 0.24 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 132534815 132534815 G A FSTL4 Missense_Mutation p.T834I 0.48 deleterious(0.01) benign(0.258) TCGA-DU-6392-01 5 132537633 132537633 G A FSTL4 Silent p.N606N 0.38 TCGA-DU-6392-01 5 132736489 132736489 G A FSTL4 Missense_Mutation p.A117V 0.40 deleterious(0) benign(0.17) TCGA-DU-6392-01 5 133534873 133534873 C T PPP2CA Missense_Mutation p.R254Q 0.27 tolerated(0.65) benign(0) TCGA-DU-6392-01 5 133536734 133536734 G T PPP2CA Missense_Mutation p.S173Y 0.36 deleterious(0.01) probably_damaging(0.983) TCGA-DU-6392-01 5 133541666 133541666 C T PPP2CA Missense_Mutation p.V87I 0.08 deleterious(0) possibly_damaging(0.525) TCGA-DU-6392-01 5 133996919 133996919 G T SEC24A Missense_Mutation p.V70F 0.08 tolerated_low_confidence(0.73) benign(0.001) TCGA-DU-6392-01 5 134059261 134059261 A C SEC24A Missense_Mutation p.D1023A 0.15 tolerated(0.64) benign(0.002) TCGA-DU-6392-01 5 134109457 134109457 G A DDX46 Silent p.E173E 0.45 TCGA-DU-6392-01 5 134113367 134113367 A - DDX46 Frame_Shift_Del p.K241Nfs*4 0.24 TCGA-DU-6392-01 5 134124246 134124246 C A DDX46 Missense_Mutation p.P503H 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 134152280 134152280 G A DDX46 Missense_Mutation p.G866D 0.30 tolerated(0.07) benign(0.029) TCGA-DU-6392-01 5 134190879 134190879 A G C5orf24 Missense_Mutation p.T97A 0.26 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 5 134367153 134367153 G A PITX1 Missense_Mutation p.A72V 0.44 tolerated(0.33) benign(0.011) TCGA-DU-6392-01 5 134679121 134679121 G A H2AFY Missense_Mutation p.A261V 0.48 tolerated(0.7) benign(0.011) TCGA-DU-6392-01 5 134705832 134705832 G A H2AFY Missense_Mutation p.A58V 0.56 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 5 134785473 134785473 G A TIFAB Missense_Mutation p.L53F 0.54 tolerated(0.09) benign(0.233) TCGA-DU-6392-01 5 135231130 135231130 G T IL9 Missense_Mutation p.S61Y 0.11 deleterious(0.03) probably_damaging(0.951) TCGA-DU-6392-01 5 135392419 135392419 C T TGFBI Missense_Mutation p.T538I 0.18 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 135583405 135583405 G T TRPC7 Missense_Mutation p.P533H 0.31 deleterious(0.01) probably_damaging(0.971) TCGA-DU-6392-01 5 135693008 135693008 C T TRPC7 Missense_Mutation p.R23H 0.29 deleterious(0.02) probably_damaging(0.96) TCGA-DU-6392-01 5 136314274 136314274 G A SPOCK1 3'UTR 0.37 TCGA-DU-6392-01 5 136957729 136957729 T C KLHL3 3'UTR 0.44 TCGA-DU-6392-01 5 13708294 13708294 C T DNAH5 Missense_Mutation p.E4426K 0.35 possibly_damaging(0.635) TCGA-DU-6392-01 5 137242000 137242000 C A PKD2L2 Silent p.S284S 0.32 TCGA-DU-6392-01 5 137289855 137289855 C A FAM13B Missense_Mutation p.R551I 0.10 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 5 137295347 137295347 G A FAM13B Missense_Mutation p.H467Y 0.10 tolerated(0.44) benign(0.065) TCGA-DU-6392-01 5 137342722 137342722 T C FAM13B Missense_Mutation p.M269V 0.10 tolerated(0.35) benign(0.001) TCGA-DU-6392-01 5 137527974 137527974 G A CDC23 Missense_Mutation p.R424W 0.40 deleterious(0.01) probably_damaging(0.948) TCGA-DU-6392-01 5 137536863 137536863 G T CDC23 Missense_Mutation p.T196N 0.42 deleterious(0.01) benign(0.017) TCGA-DU-6392-01 5 137548861 137548861 G A CDC23 Silent p.G47G 0.33 TCGA-DU-6392-01 5 13758996 13758996 C T DNAH5 Missense_Mutation p.V3460M 0.35 possibly_damaging(0.867) TCGA-DU-6392-01 5 13759067 13759067 C T DNAH5 Missense_Mutation p.R3436H 0.37 possibly_damaging(0.812) TCGA-DU-6392-01 5 137627773 137627773 C T CDC25C Silent p.S216S 0.37 TCGA-DU-6392-01 5 137717216 137717216 C T KDM3B Silent p.I239I 0.25 TCGA-DU-6392-01 5 137721803 137721803 G A KDM3B Silent p.S291S 0.34 TCGA-DU-6392-01 5 137721960 137721960 T A KDM3B Missense_Mutation p.S344T 0.11 tolerated(0.79) benign(0.004) TCGA-DU-6392-01 5 137803019 137803019 C T EGR1 Missense_Mutation p.A294V 0.36 deleterious(0.03) unknown(0) TCGA-DU-6392-01 5 13781003 13781004 - T DNAH5 Frame_Shift_Ins p.Q2963Afs*55 0.33 TCGA-DU-6392-01 5 13814920 13814920 C A DNAH5 Missense_Mutation p.D2342Y 0.31 probably_damaging(0.961) TCGA-DU-6392-01 5 138264967 138264967 G A CTNNA1 Silent p.E644E 0.36 TCGA-DU-6392-01 5 138362650 138362650 C T SIL1 Missense_Mutation p.R162H 0.42 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 5 13864621 13864621 C T DNAH5 Missense_Mutation p.R1494Q 0.32 possibly_damaging(0.553) TCGA-DU-6392-01 5 13891148 13891148 C T DNAH5 Silent p.T838T 0.27 TCGA-DU-6392-01 5 139216472 139216472 C T PSD2 Nonsense_Mutation p.R494* 0.38 TCGA-DU-6392-01 5 139494544 139494544 C T PURA Missense_Mutation p.P260S 0.24 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 139508090 139508090 G A IGIP Missense_Mutation p.R10H 0.27 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-DU-6392-01 5 139574094 139574094 C T CYSTM1 Missense_Mutation p.T15M 0.31 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 5 139742030 139742031 - T SLC4A9 Frame_Shift_Ins p.C267Lfs*15 0.32 TCGA-DU-6392-01 5 139876355 139876356 - A ANKHD1 Frame_Shift_Ins p.I834Nfs*43 0.23 TCGA-DU-6392-01 5 139887505 139887505 C A ANKHD1 Silent p.T1229T 0.10 TCGA-DU-6392-01 5 139909249 139909249 G T ANKHD1 Missense_Mutation p.D2240Y 0.09 probably_damaging(0.975) TCGA-DU-6392-01 5 140023377 140023377 G A TMCO6 Missense_Mutation p.V311M 0.37 deleterious(0.01) probably_damaging(0.977) TCGA-DU-6392-01 5 140041219 140041219 G A IK Silent p.G476G 0.30 TCGA-DU-6392-01 5 140049100 140049100 G A WDR55 Missense_Mutation p.R338H 0.26 deleterious(0.05) possibly_damaging(0.899) TCGA-DU-6392-01 5 140056271 140056271 G A HARS Missense_Mutation p.R388W 0.52 deleterious(0) possibly_damaging(0.777) TCGA-DU-6392-01 5 140075366 140075366 C T HARS2 Missense_Mutation p.A190V 0.30 deleterious(0.05) probably_damaging(0.942) TCGA-DU-6392-01 5 140085217 140085217 A G ZMAT2 Missense_Mutation p.Y159C 0.16 tolerated(0.05) possibly_damaging(0.894) TCGA-DU-6392-01 5 140165879 140165879 G A PCDHA1 Missense_Mutation p.V2M 0.36 tolerated_low_confidence(0.12) benign(0.013) TCGA-DU-6392-01 5 140167108 140167108 C T PCDHA1 Silent p.S411S 0.17 TCGA-DU-6392-01 5 140167237 140167237 G A PCDHA1 Silent p.A454A 0.41 TCGA-DU-6392-01 5 140175795 140175795 G A PCDHA2 Missense_Mutation p.E416K 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-6392-01 5 140182502 140182502 G A PCDHA3 Missense_Mutation p.G574S 0.09 tolerated_low_confidence(0.17) benign(0.048) TCGA-DU-6392-01 5 140182645 140182645 G A PCDHA3 Silent p.P621P 0.10 TCGA-DU-6392-01 5 140201478 140201478 C T PCDHA5 Missense_Mutation p.H40Y 0.12 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-DU-6392-01 5 140202078 140202078 G A PCDHA5 Missense_Mutation p.E240K 0.43 tolerated_low_confidence(0.58) benign(0.018) TCGA-DU-6392-01 5 140203007 140203007 G A PCDHA5 Silent p.T549T 0.37 TCGA-DU-6392-01 5 140209489 140209489 G A PCDHA6 Missense_Mutation p.A605T 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.745) TCGA-DU-6392-01 5 140209564 140209564 G A PCDHA6 Missense_Mutation p.E630K 0.09 deleterious_low_confidence(0.02) probably_damaging(0.923) TCGA-DU-6392-01 5 140214409 140214409 G A PCDHA7 Silent p.P147P 0.47 TCGA-DU-6392-01 5 140215580 140215580 C T PCDHA7 Missense_Mutation p.R538C 0.34 deleterious_low_confidence(0.01) benign(0.276) TCGA-DU-6392-01 5 140221960 140221960 C T PCDHA8 Silent p.L352L 0.06 TCGA-DU-6392-01 5 140235801 140235801 G A PCDHA10 Silent p.A56A 0.47 TCGA-DU-6392-01 5 140236494 140236494 G A PCDHA10 Silent p.T287T 0.36 TCGA-DU-6392-01 5 140237081 140237081 C T PCDHA10 Missense_Mutation p.A483V 0.25 tolerated_low_confidence(0.07) benign(0.168) TCGA-DU-6392-01 5 140242835 140242835 C T AC005609.1 Silent p.S47S 0.33 TCGA-DU-6392-01 5 140242918 140242918 C T AC005609.1 Missense_Mutation p.V20M 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.791) TCGA-DU-6392-01 5 140249195 140249195 C A PCDHA11 Silent p.T169T 0.09 TCGA-DU-6392-01 5 140249367 140249367 C T PCDHA11 Missense_Mutation p.R227W 0.42 deleterious_low_confidence(0.01) benign(0.032) TCGA-DU-6392-01 5 140249965 140249965 C T PCDHA11 Missense_Mutation p.A426V 0.36 tolerated_low_confidence(0.06) possibly_damaging(0.873) TCGA-DU-6392-01 5 140250150 140250150 C T PCDHA11 Silent p.L488L 0.34 TCGA-DU-6392-01 5 140257242 140257242 G A PCDHA12 Missense_Mutation p.V729M 0.58 deleterious_low_confidence(0.02) benign(0.035) TCGA-DU-6392-01 5 140263264 140263264 G A PCDHA13 Missense_Mutation p.G471S 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 5 1403055 1403055 C T SLC6A3 Silent p.L583L 0.25 TCGA-DU-6392-01 5 140307659 140307659 C A PCDHAC1 Nonsense_Mutation p.Y394* 0.14 TCGA-DU-6392-01 5 140308746 140308746 C T PCDHAC1 Missense_Mutation p.R757W 0.39 deleterious(0.03) benign(0.014) TCGA-DU-6392-01 5 140347082 140347082 C T PCDHAC2 Missense_Mutation p.S244F 0.32 tolerated(0.71) benign(0.003) TCGA-DU-6392-01 5 140347266 140347266 G A PCDHAC2 Silent p.R305R 0.33 TCGA-DU-6392-01 5 140347359 140347359 G T PCDHAC2 Missense_Mutation p.Q336H 0.16 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 5 140431571 140431571 G A PCDHB1 Silent p.L172L 0.13 TCGA-DU-6392-01 5 140474606 140474606 C T PCDHB2 Nonsense_Mutation p.Q78* 0.27 TCGA-DU-6392-01 5 140475165 140475165 C T PCDHB2 Missense_Mutation p.A264V 0.32 tolerated_low_confidence(1) benign(0.013) TCGA-DU-6392-01 5 140475745 140475745 C A PCDHB2 Silent p.S457S 0.08 TCGA-DU-6392-01 5 140476722 140476722 G A PCDHB2 Missense_Mutation p.R783K 0.08 tolerated_low_confidence(0.37) benign(0.003) TCGA-DU-6392-01 5 140501652 140501652 G T PCDHB4 Missense_Mutation p.Q24H 0.28 tolerated_low_confidence(0.14) benign(0.001) TCGA-DU-6392-01 5 140502941 140502941 C T PCDHB4 Missense_Mutation p.S454F 0.26 deleterious(0.01) benign(0.031) TCGA-DU-6392-01 5 140503114 140503114 C A PCDHB4 Missense_Mutation p.L512M 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 5 140503618 140503618 G A PCDHB4 Missense_Mutation p.A680T 0.37 tolerated_low_confidence(0.18) benign(0.036) TCGA-DU-6392-01 5 140515416 140515416 C T PCDHB5 Missense_Mutation p.P134S 0.33 tolerated_low_confidence(0.33) benign(0.001) TCGA-DU-6392-01 5 140516912 140516912 C T PCDHB5 Silent p.R632R 0.52 TCGA-DU-6392-01 5 140531705 140531705 C T PCDHB6 Missense_Mutation p.R623C 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.855) TCGA-DU-6392-01 5 140532290 140532290 C A PCDHB6 3'UTR 0.50 TCGA-DU-6392-01 5 140537043 140537043 C A PCDHB17 Nonsense_Mutation p.Y489* 0.09 TCGA-DU-6392-01 5 140552833 140552833 C A PCDHB7 Silent p.S139S 0.43 TCGA-DU-6392-01 5 140553826 140553826 C T PCDHB7 Silent p.I470I 0.31 TCGA-DU-6392-01 5 140554240 140554240 G A PCDHB7 Silent p.K608K 0.08 TCGA-DU-6392-01 5 140554318 140554318 C T PCDHB7 Silent p.D634D 0.20 TCGA-DU-6392-01 5 140562669 140562669 C T PCDHB16 Missense_Mutation p.R179W 0.50 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-DU-6392-01 5 140562776 140562776 G A PCDHB16 Silent p.A214A 0.38 TCGA-DU-6392-01 5 140564037 140564037 G A PCDHB16 Missense_Mutation p.A635T 0.13 deleterious_low_confidence(0.03) benign(0.021) TCGA-DU-6392-01 5 140572975 140572975 G A PCDHB10 Missense_Mutation p.A284T 0.36 deleterious_low_confidence(0.04) benign(0.047) TCGA-DU-6392-01 5 140574228 140574228 G A PCDHB10 Silent p.S701S 0.38 TCGA-DU-6392-01 5 140581119 140581119 C T PCDHB11 Missense_Mutation p.A591V 0.50 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-DU-6392-01 5 140589847 140589847 C T PCDHB12 Silent p.Y456Y 0.50 TCGA-DU-6392-01 5 140590516 140590516 C T PCDHB12 Silent p.A679A 0.46 TCGA-DU-6392-01 5 140594043 140594044 - T PCDHB13 Frame_Shift_Ins p.Q119Sfs*3 0.14 TCGA-DU-6392-01 5 140603415 140603415 C A PCDHB14 Missense_Mutation p.P113H 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-6392-01 5 140604400 140604400 C T PCDHB14 Silent p.L441L 0.37 TCGA-DU-6392-01 5 140615604 140615604 C T PCDHB18 RNA 0.34 TCGA-DU-6392-01 5 140627342 140627342 T C PCDHB15 Silent p.F732F 0.07 TCGA-DU-6392-01 5 140682820 140682820 C A SLC25A2 Missense_Mutation p.D205Y 0.08 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 5 140710700 140710700 C T PCDHGA1 Missense_Mutation p.T150I 0.39 deleterious_low_confidence(0.04) benign(0.364) TCGA-DU-6392-01 5 140711783 140711783 C T PCDHGA1 Missense_Mutation p.T511I 0.34 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DU-6392-01 5 140712311 140712311 C T PCDHGA1 Missense_Mutation p.S687L 0.29 deleterious_low_confidence(0.01) benign(0.117) TCGA-DU-6392-01 5 140718798 140718798 C T PCDHGA2 Missense_Mutation p.A87V 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.477) TCGA-DU-6392-01 5 140719530 140719530 C T PCDHGA2 Missense_Mutation p.A331V 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-DU-6392-01 5 140720329 140720329 C T PCDHGA2 Silent p.D597D 0.41 TCGA-DU-6392-01 5 140723715 140723715 C A PCDHGA3 Missense_Mutation p.L39I 0.41 tolerated_low_confidence(0.12) benign(0.132) TCGA-DU-6392-01 5 140725798 140725798 C T PCDHGA3 Missense_Mutation p.A733V 0.34 tolerated_low_confidence(0.23) benign(0.011) TCGA-DU-6392-01 5 140725817 140725817 C T PCDHGA3 Silent p.H739H 0.39 TCGA-DU-6392-01 5 140740498 140740498 G A PCDHGB2 Missense_Mutation p.A266T 0.52 deleterious(0.01) possibly_damaging(0.658) TCGA-DU-6392-01 5 140754977 140754977 G A PCDHGA6 Missense_Mutation p.A443T 0.08 tolerated_low_confidence(0.27) benign(0.158) TCGA-DU-6392-01 5 140764376 140764376 C T PCDHGA7 Missense_Mutation p.A637V 0.21 deleterious_low_confidence(0.02) benign(0.279) TCGA-DU-6392-01 5 140769033 140769033 C A PCDHGB4 Missense_Mutation p.L528I 0.36 tolerated(0.18) probably_damaging(0.955) TCGA-DU-6392-01 5 140773877 140773877 G A PCDHGA8 Silent p.A499A 0.54 TCGA-DU-6392-01 5 140774315 140774315 C A PCDHGA8 Silent p.A645A 0.15 TCGA-DU-6392-01 5 140783914 140783914 C T PCDHGA9 Silent p.N465N 0.44 TCGA-DU-6392-01 5 140784723 140784723 T C PCDHGA9 Missense_Mutation p.V735A 0.49 tolerated_low_confidence(0.11) benign(0.01) TCGA-DU-6392-01 5 140787945 140787945 T G PCDHGB6 Missense_Mutation p.L59R 0.12 tolerated(1) benign(0.006) TCGA-DU-6392-01 5 140788094 140788094 G A PCDHGB6 Missense_Mutation p.V109M 0.36 tolerated(0.05) possibly_damaging(0.905) TCGA-DU-6392-01 5 140788768 140788768 A G PCDHGB6 Silent p.V333V 0.42 TCGA-DU-6392-01 5 140793483 140793483 C A PCDHGA10 Silent p.T247T 0.15 TCGA-DU-6392-01 5 140794055 140794055 C T PCDHGA10 Missense_Mutation p.T438M 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.828) TCGA-DU-6392-01 5 140798177 140798177 C A PCDHGB7 Missense_Mutation p.L251I 0.48 tolerated(0.14) benign(0.124) TCGA-DU-6392-01 5 140811102 140811102 C T PCDHGA12 Missense_Mutation p.T259M 0.35 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-DU-6392-01 5 140811664 140811664 C T PCDHGA12 Silent p.N446N 0.24 TCGA-DU-6392-01 5 140856640 140856640 G T PCDHGC3 Missense_Mutation p.E319D 0.37 tolerated(0.08) possibly_damaging(0.518) TCGA-DU-6392-01 5 140857116 140857116 A G PCDHGC3 Missense_Mutation p.N478S 0.09 tolerated(1) benign(0.336) TCGA-DU-6392-01 5 140864800 140864800 C T PCDHGC4 Silent p.L20L 0.37 TCGA-DU-6392-01 5 140957091 140957091 G T DIAPH1 Missense_Mutation p.L411I 0.36 unknown(0) TCGA-DU-6392-01 5 141007475 141007475 C A HDAC3 Missense_Mutation p.S272I 0.10 deleterious(0) probably_damaging(0.958) TCGA-DU-6392-01 5 141037986 141037986 C A ARAP3 Missense_Mutation p.A1158S 0.14 tolerated(0.18) benign(0.021) TCGA-DU-6392-01 5 141039454 141039454 C T ARAP3 Silent p.R1053R 0.43 TCGA-DU-6392-01 5 141050955 141050955 C T ARAP3 Missense_Mutation p.A623T 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-DU-6392-01 5 141051471 141051471 C A ARAP3 Missense_Mutation p.E554D 0.09 deleterious(0.03) possibly_damaging(0.877) TCGA-DU-6392-01 5 141244899 141244899 C T PCDH1 Missense_Mutation p.D333N 0.30 tolerated(0.56) probably_damaging(0.999) TCGA-DU-6392-01 5 141336296 141336296 G T PCDH12 Missense_Mutation p.A374D 0.30 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 141382753 141382753 C T GNPDA1 Missense_Mutation p.M223I 0.10 deleterious(0.02) possibly_damaging(0.774) TCGA-DU-6392-01 5 141694663 141694663 G A SPRY4 Missense_Mutation p.P27L 0.40 tolerated(0.13) benign(0.165) TCGA-DU-6392-01 5 1420736 1420736 T G SLC6A3 Missense_Mutation p.D292A 0.41 tolerated(0.24) benign(0.201) TCGA-DU-6392-01 5 142281518 142281518 G T ARHGAP26 Nonsense_Mutation p.G206* 0.10 TCGA-DU-6392-01 5 142500708 142500708 A G ARHGAP26 Missense_Mutation p.E565G 0.16 tolerated(0.07) benign(0.442) TCGA-DU-6392-01 5 142602013 142602013 C T ARHGAP26 3'UTR 0.35 TCGA-DU-6392-01 5 142662143 142662143 G T NR3C1 Missense_Mutation p.S725Y 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 5 142780045 142780045 C T NR3C1 Silent p.K120K 0.38 TCGA-DU-6392-01 5 143853619 143853619 G A KCTD16 Missense_Mutation p.R410Q 0.33 tolerated(0.29) benign(0.357) TCGA-DU-6392-01 5 14399169 14399169 G A TRIO Missense_Mutation p.S1535N 0.08 benign(0.022) TCGA-DU-6392-01 5 14471491 14471491 A G TRIO Missense_Mutation p.N1943S 0.25 benign(0.003) TCGA-DU-6392-01 5 145176105 145176105 T A PRELID2 Missense_Mutation p.E137V 0.11 tolerated(0.12) benign(0.241) TCGA-DU-6392-01 5 145317698 145317698 C T SH3RF2 Silent p.L69L 0.47 TCGA-DU-6392-01 5 145439660 145439660 C T SH3RF2 Missense_Mutation p.A596V 0.48 tolerated(1) benign(0.008) TCGA-DU-6392-01 5 145464109 145464109 C T PLAC8L1 Silent p.A140A 0.39 TCGA-DU-6392-01 5 145523015 145523015 C A LARS Missense_Mutation p.G613C 0.06 deleterious(0) possibly_damaging(0.828) TCGA-DU-6392-01 5 145524035 145524035 G A LARS Missense_Mutation p.T552I 0.25 tolerated(0.15) benign(0.153) TCGA-DU-6392-01 5 145552302 145552302 T C LARS Missense_Mutation p.Y54C 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 145664218 145664218 C T RBM27 Missense_Mutation p.R1008W 0.30 deleterious(0.02) probably_damaging(0.941) TCGA-DU-6392-01 5 145894747 145894747 C T GPR151 Silent p.S310S 0.37 TCGA-DU-6392-01 5 146070694 146070694 C T PPP2R2B Silent p.L151L 0.38 TCGA-DU-6392-01 5 146728297 146728297 C T STK32A Intron 0.36 TCGA-DU-6392-01 5 146997622 146997622 A G JAKMIP2 Missense_Mutation p.I733T 0.30 tolerated(0.39) benign(0.234) TCGA-DU-6392-01 5 147020280 147020280 T C JAKMIP2 Missense_Mutation p.D463G 0.36 tolerated(0.18) benign(0.031) TCGA-DU-6392-01 5 14713083 14713083 C A ANKH Splice_Site p.X422_splice 0.47 TCGA-DU-6392-01 5 147261008 147261008 G T SCGB3A2 Splice_Site p.X19_splice 0.35 TCGA-DU-6392-01 5 147594571 147594571 C A SPINK6 3'UTR 0.42 TCGA-DU-6392-01 5 148627447 148627447 C T ABLIM3 Missense_Mutation p.R552W 0.33 deleterious(0) possibly_damaging(0.556) TCGA-DU-6392-01 5 148756437 148756437 C T IL17B Missense_Mutation p.R58H 0.49 tolerated(0.46) possibly_damaging(0.742) TCGA-DU-6392-01 5 148885022 148885022 T G CSNK1A1 Missense_Mutation p.S360R 0.35 tolerated_low_confidence(0.12) benign(0.067) TCGA-DU-6392-01 5 148899866 148899866 C T CSNK1A1 Missense_Mutation p.R148H 0.47 deleterious_low_confidence(0.03) benign(0.021) TCGA-DU-6392-01 5 148996239 148996239 G C ARHGEF37 Missense_Mutation p.A190P 0.35 tolerated(0.28) possibly_damaging(0.811) TCGA-DU-6392-01 5 148997783 148997783 C A ARHGEF37 Missense_Mutation p.L235M 0.42 deleterious(0.03) possibly_damaging(0.853) TCGA-DU-6392-01 5 149011551 149011551 G T ARHGEF37 Missense_Mutation p.A609S 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 149212524 149212524 C A PPARGC1B Silent p.T296T 0.36 TCGA-DU-6392-01 5 149212534 149212534 C A PPARGC1B Missense_Mutation p.P300T 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 149435686 149435686 C T CSF1R Silent p.V819V 0.44 TCGA-DU-6392-01 5 149437134 149437134 C T CSF1R Silent p.Q718Q 0.36 TCGA-DU-6392-01 5 149439387 149439387 C T CSF1R Missense_Mutation p.D670N 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 149441346 149441346 C T CSF1R Missense_Mutation p.D565N 0.36 deleterious(0.01) benign(0.08) TCGA-DU-6392-01 5 149459812 149459812 G T CSF1R Missense_Mutation p.P132Q 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 1494887 1494887 C T LPCAT1 Missense_Mutation p.A141T 0.13 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 149501462 149501462 G A PDGFRB Silent p.Y775Y 0.35 TCGA-DU-6392-01 5 149578855 149578855 C T SLC6A7 Missense_Mutation p.L217F 0.49 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 5 149602646 149602646 C T CAMK2A Missense_Mutation p.A458T 0.41 tolerated_low_confidence(0.59) benign(0.009) TCGA-DU-6392-01 5 149619269 149619269 T C CAMK2A Missense_Mutation p.M339V 0.44 tolerated_low_confidence(0.38) benign(0.007) TCGA-DU-6392-01 5 149676655 149676655 A C ARSI 3'UTR 0.27 TCGA-DU-6392-01 5 149749101 149749101 C T TCOF1 Missense_Mutation p.S192L 0.23 deleterious(0) possibly_damaging(0.453) TCGA-DU-6392-01 5 149901306 149901306 G A NDST1 Missense_Mutation p.V164M 0.06 deleterious(0) possibly_damaging(0.893) TCGA-DU-6392-01 5 149927815 149927815 G A NDST1 Silent p.K727K 0.36 TCGA-DU-6392-01 5 150080610 150080610 T C RBM22 5'UTR 0.44 TCGA-DU-6392-01 5 150276166 150276166 G T ZNF300 Missense_Mutation p.P228H 0.16 tolerated(0.54) benign(0.001) TCGA-DU-6392-01 5 150276343 150276343 C T ZNF300 Missense_Mutation p.S169N 0.28 tolerated(0.57) benign(0.001) TCGA-DU-6392-01 5 150276353 150276353 A C ZNF300 Missense_Mutation p.F166V 0.35 tolerated(0.88) benign(0.001) TCGA-DU-6392-01 5 150444602 150444602 C A TNIP1 Nonsense_Mutation p.G19* 0.39 TCGA-DU-6392-01 5 150488054 150488054 T C ANXA6 Missense_Mutation p.E581G 0.42 deleterious(0) benign(0.005) TCGA-DU-6392-01 5 150512099 150512099 G A ANXA6 Missense_Mutation p.P225L 0.25 deleterious(0) benign(0.438) TCGA-DU-6392-01 5 150514015 150514015 G A ANXA6 Silent p.S173S 0.40 TCGA-DU-6392-01 5 150892037 150892037 C T FAT2 Missense_Mutation p.R3865H 0.46 benign(0.037) TCGA-DU-6392-01 5 150900894 150900894 C T FAT2 Missense_Mutation p.A3754T 0.47 probably_damaging(0.984) TCGA-DU-6392-01 5 150901209 150901209 G A FAT2 Missense_Mutation p.R3649W 0.23 probably_damaging(1) TCGA-DU-6392-01 5 150911154 150911154 G A FAT2 Missense_Mutation p.R3269C 0.35 possibly_damaging(0.773) TCGA-DU-6392-01 5 150922829 150922829 A G FAT2 Missense_Mutation p.V2620A 0.08 probably_damaging(0.999) TCGA-DU-6392-01 5 150929016 150929016 A C FAT2 Missense_Mutation p.I1543M 0.42 probably_damaging(0.943) TCGA-DU-6392-01 5 150934222 150934222 C T FAT2 Missense_Mutation p.D1216N 0.38 probably_damaging(0.996) TCGA-DU-6392-01 5 150945414 150945414 G T FAT2 Missense_Mutation p.L1027I 0.47 probably_damaging(0.998) TCGA-DU-6392-01 5 150945768 150945768 T C FAT2 Missense_Mutation p.T909A 0.28 benign(0.268) TCGA-DU-6392-01 5 150946459 150946459 T G FAT2 Missense_Mutation p.Q678H 0.10 benign(0.003) TCGA-DU-6392-01 5 150946498 150946498 T C FAT2 Silent p.E665E 0.35 TCGA-DU-6392-01 5 150947377 150947377 A G FAT2 Silent p.S372S 0.09 TCGA-DU-6392-01 5 150947407 150947407 G A FAT2 Silent p.F362F 0.55 TCGA-DU-6392-01 5 151125971 151125971 C T ATOX1 Missense_Mutation p.C41Y 0.08 tolerated(1) benign(0.015) TCGA-DU-6392-01 5 151179873 151179873 A G G3BP1 Silent p.E350E 0.08 TCGA-DU-6392-01 5 151784197 151784197 G A NMUR2 Missense_Mutation p.R160W 0.33 deleterious(0.03) probably_damaging(0.989) TCGA-DU-6392-01 5 152870340 152870340 G A GRIA1 5'Flank 0.35 TCGA-DU-6392-01 5 153026485 153026485 T C GRIA1 Intron 0.11 TCGA-DU-6392-01 5 153406011 153406011 T A FAM114A2 Missense_Mutation p.K287N 0.40 deleterious(0.01) benign(0.191) TCGA-DU-6392-01 5 153432912 153432912 C A MFAP3 Missense_Mutation p.P243H 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 154172182 154172182 C T LARP1 Missense_Mutation p.P112S 0.33 tolerated(0.79) benign(0.124) TCGA-DU-6392-01 5 154200010 154200010 G A FAXDC2 Silent p.L290L 0.36 TCGA-DU-6392-01 5 154200982 154200982 G A FAXDC2 Missense_Mutation p.S228F 0.28 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 5 154250340 154250340 G A CNOT8 Missense_Mutation p.G144E 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 154394629 154394629 C T KIF4B Missense_Mutation p.R404C 0.08 tolerated(0.06) benign(0.023) TCGA-DU-6392-01 5 15500628 15500628 G A FBXL7 5'UTR 0.25 TCGA-DU-6392-01 5 156186309 156186309 T G SGCD Missense_Mutation p.F261V 0.37 deleterious(0) benign(0.079) TCGA-DU-6392-01 5 156479468 156479468 T G HAVCR1 Missense_Mutation p.T193P 0.06 tolerated(0.15) unknown(0) TCGA-DU-6392-01 5 156565837 156565837 T C MED7 Silent p.E202E 0.12 TCGA-DU-6392-01 5 156589936 156589936 C T FAM71B Missense_Mutation p.R447H 0.45 tolerated(0.41) benign(0.001) TCGA-DU-6392-01 5 156641241 156641241 C A ITK Missense_Mutation p.P122H 0.10 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 5 156721855 156721855 C T CYFIP2 Intron 0.12 TCGA-DU-6392-01 5 156727724 156727724 G A CYFIP2 Missense_Mutation p.R104H 0.50 tolerated(0.07) benign(0.022) TCGA-DU-6392-01 5 156750996 156750996 G T CYFIP2 Missense_Mutation p.R554M 0.47 deleterious(0) possibly_damaging(0.528) TCGA-DU-6392-01 5 156915368 156915368 G T ADAM19 Missense_Mutation p.P819T 0.12 deleterious(0.05) benign(0.318) TCGA-DU-6392-01 5 156940493 156940493 G A ADAM19 Silent p.D229D 0.41 TCGA-DU-6392-01 5 157159948 157159948 G T THG1L Missense_Mutation p.Q88H 0.13 tolerated(0.11) benign(0.093) TCGA-DU-6392-01 5 157161716 157161716 G T THG1L Missense_Mutation p.Q167H 0.09 tolerated(0.09) benign(0.043) TCGA-DU-6392-01 5 157161725 157161725 G T THG1L Missense_Mutation p.K170N 0.31 deleterious(0) possibly_damaging(0.584) TCGA-DU-6392-01 5 157181872 157181872 G A LSM11 Missense_Mutation p.R228Q 0.40 tolerated(0.07) probably_damaging(0.988) TCGA-DU-6392-01 5 158158077 158158077 C A EBF1 Missense_Mutation p.K375N 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 158585820 158585820 G T RNF145 Missense_Mutation p.T647N 0.40 tolerated_low_confidence(0.56) benign(0) TCGA-DU-6392-01 5 158601151 158601151 C T RNF145 Missense_Mutation p.G243S 0.37 deleterious(0.04) probably_damaging(0.971) TCGA-DU-6392-01 5 158696048 158696048 G A UBLCP1 Missense_Mutation p.R42H 0.34 deleterious(0.05) benign(0.077) TCGA-DU-6392-01 5 158753700 158753700 T C IL12B Intron 0.35 TCGA-DU-6392-01 5 158753738 158753738 G T IL12B Missense_Mutation p.S18Y 0.40 deleterious(0.01) possibly_damaging(0.646) TCGA-DU-6392-01 5 159344282 159344282 G A ADRA1B Missense_Mutation p.V124M 0.42 deleterious(0.03) possibly_damaging(0.82) TCGA-DU-6392-01 5 159545952 159545952 G A PWWP2A Silent p.G148G 0.60 TCGA-DU-6392-01 5 159830236 159830236 G T SLU7 3'UTR 0.27 TCGA-DU-6392-01 5 159849771 159849771 G C PTTG1 Silent p.T49T 0.46 TCGA-DU-6392-01 5 160033805 160033805 G A ATP10B Nonsense_Mutation p.R1043* 0.11 TCGA-DU-6392-01 5 160047762 160047762 T C ATP10B Missense_Mutation p.S670G 0.08 tolerated(0.12) benign(0.02) TCGA-DU-6392-01 5 160076222 160076222 C T ATP10B Silent p.V239V 0.11 TCGA-DU-6392-01 5 160721284 160721284 C A GABRB2 Missense_Mutation p.R448M 0.51 deleterious(0.01) benign(0.209) TCGA-DU-6392-01 5 160763653 160763653 A G GABRB2 Missense_Mutation p.V222A 0.42 tolerated(0.15) possibly_damaging(0.461) TCGA-DU-6392-01 5 161119197 161119197 G T GABRA6 Missense_Mutation p.E359D 0.34 tolerated(0.5) benign(0.16) TCGA-DU-6392-01 5 161317903 161317903 G A GABRA1 Splice_Site p.X235_splice 0.42 TCGA-DU-6392-01 5 161322744 161322744 C T GABRA1 Missense_Mutation p.A310V 0.44 tolerated(0.24) probably_damaging(0.992) TCGA-DU-6392-01 5 161324243 161324243 G A GABRA1 Missense_Mutation p.E396K 0.44 tolerated(0.51) benign(0.178) TCGA-DU-6392-01 5 161569262 161569262 G A GABRG2 Missense_Mutation p.V328I 0.36 tolerated(0.42) probably_damaging(0.996) TCGA-DU-6392-01 5 162880961 162880962 - A NUDCD2 3'UTR 0.35 TCGA-DU-6392-01 5 162944711 162944711 C A MAT2B Intron 0.45 TCGA-DU-6392-01 5 163454 163454 T C PLEKHG4B Silent p.P733P 0.10 TCGA-DU-6392-01 5 16465590 16465590 C A ZNF622 Missense_Mutation p.S62I 0.08 deleterious(0.01) possibly_damaging(0.498) TCGA-DU-6392-01 5 16671615 16671615 C A MYO10 Missense_Mutation p.W1782C 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 5 16676221 16676221 G A MYO10 Missense_Mutation p.R1529W 0.44 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 5 16689991 16689991 C T MYO10 Missense_Mutation p.D1280N 0.45 tolerated(0.63) probably_damaging(0.997) TCGA-DU-6392-01 5 16702672 16702672 C T MYO10 Missense_Mutation p.A846T 0.30 tolerated(0.31) probably_damaging(0.989) TCGA-DU-6392-01 5 167626996 167626996 T C TENM2 Missense_Mutation p.I1097T 0.08 tolerated(0.35) benign(0.063) TCGA-DU-6392-01 5 167631584 167631584 G A TENM2 Missense_Mutation p.R1261H 0.36 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 5 16763613 16763613 C A MYO10 Nonsense_Mutation p.E491* 0.08 TCGA-DU-6392-01 5 167642134 167642134 G A TENM2 Missense_Mutation p.R1312H 0.41 deleterious(0.01) possibly_damaging(0.459) TCGA-DU-6392-01 5 167671627 167671627 C T TENM2 Missense_Mutation p.A1908V 0.31 tolerated(0.3) benign(0.062) TCGA-DU-6392-01 5 167674104 167674104 C A TENM2 Missense_Mutation p.L2054I 0.08 tolerated(0.11) probably_damaging(0.997) TCGA-DU-6392-01 5 167674983 167674983 T C TENM2 Missense_Mutation p.Y2347H 0.32 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 167675250 167675250 C T TENM2 Nonsense_Mutation p.R2436* 0.27 TCGA-DU-6392-01 5 167836972 167836972 C T WWC1 Missense_Mutation p.R305C 0.40 deleterious(0.01) probably_damaging(0.921) TCGA-DU-6392-01 5 167891939 167891939 G A WWC1 Missense_Mutation p.R1047H 0.43 tolerated(0.08) probably_damaging(0.979) TCGA-DU-6392-01 5 167894882 167894882 C T WWC1 Missense_Mutation p.T1069I 0.14 deleterious(0.01) benign(0.054) TCGA-DU-6392-01 5 167919797 167919797 G A RARS Missense_Mutation p.S105N 0.07 tolerated(0.19) benign(0.107) TCGA-DU-6392-01 5 168201248 168201248 G A SLIT3 Silent p.I429I 0.30 TCGA-DU-6392-01 5 169141091 169141091 C T DOCK2 Silent p.H573H 0.23 TCGA-DU-6392-01 5 169510 169510 C T PLEKHG4B Missense_Mutation p.R822W 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 169535395 169535395 C A FOXI1 Missense_Mutation p.P306H 0.10 tolerated(0.27) benign(0.182) TCGA-DU-6392-01 5 169689860 169689860 C T LCP2 Silent p.S268S 0.34 TCGA-DU-6392-01 5 170239075 170239075 A C GABRP Missense_Mutation p.D379A 0.35 tolerated(0.54) benign(0.014) TCGA-DU-6392-01 5 170395324 170395324 G A RANBP17 Nonsense_Mutation p.W551* 0.49 TCGA-DU-6392-01 5 170817090 170817090 A G NPM1 Missense_Mutation p.K32E 0.43 tolerated(0.06) possibly_damaging(0.464) TCGA-DU-6392-01 5 170827849 170827849 C T NPM1 Nonsense_Mutation p.R197* 0.19 TCGA-DU-6392-01 5 170837641 170837641 G A NPM1 3'UTR 0.17 TCGA-DU-6392-01 5 171303505 171303505 G A FBXW11 Silent p.N314N 0.44 TCGA-DU-6392-01 5 171809059 171809059 C T SH3PXD2B Missense_Mutation p.D128N 0.30 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 172324045 172324045 C T ERGIC1 Silent p.L41L 0.14 TCGA-DU-6392-01 5 172535773 172535773 C T CREBRF Nonsense_Mutation p.R457* 0.34 TCGA-DU-6392-01 5 172752930 172752930 G T STC2 Silent p.R79R 0.38 TCGA-DU-6392-01 5 173316959 173316959 T G CPEB4 Missense_Mutation p.L75V 0.10 deleterious_low_confidence(0) benign(0.045) TCGA-DU-6392-01 5 173378897 173378897 G A CPEB4 Missense_Mutation p.R579Q 0.32 deleterious(0.01) probably_damaging(0.981) TCGA-DU-6392-01 5 173380103 173380103 C T CPEB4 Missense_Mutation p.A597V 0.12 deleterious(0.01) possibly_damaging(0.895) TCGA-DU-6392-01 5 17354443 17354443 C T CTD-2139B15.2 RNA 0.15 TCGA-DU-6392-01 5 174919203 174919203 G A SFXN1 Missense_Mutation p.D33N 0.11 tolerated(0.7) benign(0.209) TCGA-DU-6392-01 5 174953825 174953825 C A SFXN1 3'UTR 0.48 TCGA-DU-6392-01 5 175111286 175111286 C T HRH2 Silent p.V350V 0.36 TCGA-DU-6392-01 5 175717181 175717181 C A SIMC1 Intron 0.29 TCGA-DU-6392-01 5 175717816 175717816 C A SIMC1 Intron 0.32 TCGA-DU-6392-01 5 175763812 175763812 G A SIMC1 Missense_Mutation p.R320H 0.40 tolerated(0.14) benign(0.004) TCGA-DU-6392-01 5 175793446 175793446 C T ARL10 Silent p.L83L 0.33 TCGA-DU-6392-01 5 175793460 175793460 C T ARL10 Silent p.G87G 0.41 TCGA-DU-6392-01 5 175815519 175815519 T C NOP16 Missense_Mutation p.T8A 0.12 tolerated_low_confidence(0.49) possibly_damaging(0.525) TCGA-DU-6392-01 5 175913417 175913417 C A FAF2 Missense_Mutation p.P65Q 0.34 deleterious(0.02) benign(0.066) TCGA-DU-6392-01 5 175933953 175933954 - T FAF2 3'UTR 0.36 TCGA-DU-6392-01 5 175956561 175956561 G A RNF44 Missense_Mutation p.R367C 0.25 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 5 175959071 175959071 G A RNF44 Silent p.G77G 0.44 TCGA-DU-6392-01 5 176003072 176003072 C A CDHR2 Silent p.A360A 0.14 TCGA-DU-6392-01 5 176011502 176011502 C A CDHR2 Missense_Mutation p.N740K 0.33 deleterious(0.02) possibly_damaging(0.772) TCGA-DU-6392-01 5 176011940 176011940 C A CDHR2 Silent p.A886A 0.56 TCGA-DU-6392-01 5 176016106 176016106 C T CDHR2 Silent p.D977D 0.36 TCGA-DU-6392-01 5 176017138 176017138 C A CDHR2 Missense_Mutation p.S1089Y 0.43 deleterious(0.01) possibly_damaging(0.827) TCGA-DU-6392-01 5 176025059 176025059 C T GPRIN1 Missense_Mutation p.V593M 0.40 tolerated(0.51) possibly_damaging(0.503) TCGA-DU-6392-01 5 176025661 176025661 G A GPRIN1 Missense_Mutation p.T392M 0.10 tolerated(0.42) benign(0.016) TCGA-DU-6392-01 5 176026572 176026572 T C GPRIN1 Silent p.R88R 0.08 TCGA-DU-6392-01 5 176078862 176078862 C T TSPAN17 Silent p.C82C 0.36 TCGA-DU-6392-01 5 176084557 176084557 C T TSPAN17 Missense_Mutation p.T286M 0.24 deleterious_low_confidence(0.01) benign(0.075) TCGA-DU-6392-01 5 176084699 176084699 G T TSPAN17 Nonstop_Mutation p.*333Yext*50 0.33 TCGA-DU-6392-01 5 176308174 176308174 C T HK3 Missense_Mutation p.R891H 0.17 tolerated(0.22) benign(0.012) TCGA-DU-6392-01 5 176517466 176517466 G A FGFR4 Missense_Mutation p.C56Y 0.31 tolerated(1) benign(0.001) TCGA-DU-6392-01 5 176518737 176518737 C T FGFR4 Missense_Mutation p.R219C 0.32 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 5 176638615 176638615 G A NSD1 Missense_Mutation p.R1072Q 0.42 deleterious_low_confidence(0.02) benign(0.107) TCGA-DU-6392-01 5 176707732 176707732 G A NSD1 Missense_Mutation p.R1930H 0.07 deleterious(0.02) benign(0.084) TCGA-DU-6392-01 5 176722240 176722240 C A NSD1 Missense_Mutation p.P2624H 0.12 tolerated_low_confidence(0.06) benign(0.037) TCGA-DU-6392-01 5 176815130 176815130 C T SLC34A1 Silent p.G260G 0.12 TCGA-DU-6392-01 5 176824065 176824065 G A SLC34A1 Missense_Mutation p.S469N 0.37 tolerated(0.41) benign(0.027) TCGA-DU-6392-01 5 176825338 176825338 G A SLC34A1 3'UTR 0.38 TCGA-DU-6392-01 5 176827109 176827109 G A PFN3 3'UTR 0.82 TCGA-DU-6392-01 5 176893796 176893796 G A DBN1 Missense_Mutation p.R252W 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 5 176931382 176931382 G T DOK3 Missense_Mutation p.L365M 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 5 176939798 176939798 G A DDX41 Missense_Mutation p.A461V 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 176965998 176965998 G A FAM193B Missense_Mutation p.L121F 0.32 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 5 177309711 177309711 G A RP11-423H2.1 RNA 0.42 TCGA-DU-6392-01 5 177571012 177571012 G A RMND5B Silent p.L199L 0.09 TCGA-DU-6392-01 5 178050414 178050414 G A CLK4 Missense_Mutation p.R2W 0.08 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-DU-6392-01 5 178310185 178310185 T C ZNF354B Silent p.C244C 0.41 TCGA-DU-6392-01 5 178310441 178310441 C T ZNF354B Missense_Mutation p.P330S 0.27 deleterious(0.01) possibly_damaging(0.715) TCGA-DU-6392-01 5 178310634 178310634 G T ZNF354B Missense_Mutation p.S394I 0.39 tolerated(0.2) possibly_damaging(0.731) TCGA-DU-6392-01 5 178311162 178311162 G T ZNF354B Missense_Mutation p.R570I 0.39 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 5 178358812 178358812 C A ZFP2 Silent p.A166A 0.09 TCGA-DU-6392-01 5 178416035 178416035 G A GRM6 Missense_Mutation p.H419Y 0.33 tolerated(0.1) benign(0.035) TCGA-DU-6392-01 5 178559886 178559886 C T ADAMTS2 Missense_Mutation p.G701S 0.33 tolerated(0.08) possibly_damaging(0.852) TCGA-DU-6392-01 5 178996388 178996388 G A RUFY1 Missense_Mutation p.A264T 0.34 deleterious(0.02) possibly_damaging(0.76) TCGA-DU-6392-01 5 179042596 179042596 T C HNRNPH1 Missense_Mutation p.D434G 0.34 tolerated_low_confidence(0.18) benign(0.027) TCGA-DU-6392-01 5 179250876 179250876 G A SQSTM1 Missense_Mutation p.R107Q 0.45 deleterious(0.02) possibly_damaging(0.475) TCGA-DU-6392-01 5 179264753 179264753 C A C5orf45 Missense_Mutation p.A224S 0.10 tolerated(0.08) possibly_damaging(0.462) TCGA-DU-6392-01 5 179292287 179292287 C A TBC1D9B Missense_Mutation p.K1013N 0.08 tolerated(0.06) benign(0.123) TCGA-DU-6392-01 5 179440075 179440075 G A RNF130 Missense_Mutation p.R227C 0.36 deleterious(0) probably_damaging(0.974) TCGA-DU-6392-01 5 179442369 179442369 T A RNF130 Intron 0.10 TCGA-DU-6392-01 5 179743862 179743862 C A GFPT2 Splice_Site p.X352_splice 0.11 TCGA-DU-6392-01 5 1798862 1798862 G A MRPL36 Missense_Mutation p.A63V 0.27 tolerated(0.1) possibly_damaging(0.75) TCGA-DU-6392-01 5 180035977 180035977 C T FLT4 Missense_Mutation p.S1295N 0.30 tolerated(0.52) benign(0.002) TCGA-DU-6392-01 5 180049799 180049799 G A FLT4 Missense_Mutation p.A530V 0.39 tolerated(0.34) benign(0.107) TCGA-DU-6392-01 5 180335749 180335749 G T BTNL8 Missense_Mutation p.K71N 0.28 deleterious(0.02) possibly_damaging(0.835) TCGA-DU-6392-01 5 180377169 180377169 G A BTNL8 Silent p.G376G 0.33 TCGA-DU-6392-01 5 180419996 180419996 T C BTNL3 Missense_Mutation p.M78T 0.39 deleterious(0) possibly_damaging(0.53) TCGA-DU-6392-01 5 180582541 180582541 T C OR2V2 Missense_Mutation p.I200T 0.43 deleterious(0) benign(0.155) TCGA-DU-6392-01 5 180660724 180660724 G A TRIM41 Missense_Mutation p.V418M 0.41 tolerated(0.36) benign(0.036) TCGA-DU-6392-01 5 180662096 180662096 A C TRIM41 3'UTR 0.36 TCGA-DU-6392-01 5 180665164 180665164 C T GNB2L1 Missense_Mutation p.A238T 0.08 deleterious(0.03) benign(0.363) TCGA-DU-6392-01 5 195094 195094 C T LRRC14B Missense_Mutation p.R391C 0.38 tolerated(0.06) benign(0.004) TCGA-DU-6392-01 5 19571703 19571703 G T CDH18 Missense_Mutation p.T413N 0.44 tolerated(0.13) benign(0.032) TCGA-DU-6392-01 5 21751923 21751923 C A CDH12 Missense_Mutation p.D770Y 0.47 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 5 21854856 21854856 C T CDH12 Silent p.P190P 0.43 TCGA-DU-6392-01 5 21975343 21975343 C T CDH12 Missense_Mutation p.R128H 0.43 tolerated(0.2) benign(0.391) TCGA-DU-6392-01 5 23523466 23523466 A G PRDM9 Missense_Mutation p.R317G 0.16 deleterious(0) benign(0.004) TCGA-DU-6392-01 5 23524486 23524486 G A PRDM9 Missense_Mutation p.A332T 0.34 deleterious(0) benign(0.19) TCGA-DU-6392-01 5 31511154 31511154 C T DROSHA Missense_Mutation p.D474N 0.07 tolerated(0.16) benign(0.034) TCGA-DU-6392-01 5 31511180 31511180 G A DROSHA Missense_Mutation p.P465L 0.40 deleterious(0.04) benign(0.018) TCGA-DU-6392-01 5 31552974 31552974 C A C5orf22 Missense_Mutation p.L432I 0.24 tolerated(0.51) benign(0.001) TCGA-DU-6392-01 5 31799656 31799657 - G PDZD2 Frame_Shift_Ins p.K104Qfs*38 0.31 TCGA-DU-6392-01 5 32059379 32059379 C T PDZD2 Silent p.C745C 0.12 TCGA-DU-6392-01 5 32088109 32088109 T G PDZD2 Missense_Mutation p.F1519V 0.08 tolerated(0.13) probably_damaging(0.962) TCGA-DU-6392-01 5 32089262 32089262 C T PDZD2 Missense_Mutation p.A1903V 0.28 tolerated(0.14) benign(0.005) TCGA-DU-6392-01 5 32091031 32091031 C A PDZD2 Missense_Mutation p.L2493I 0.21 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 5 32126249 32126249 C A GOLPH3 3'UTR 0.17 TCGA-DU-6392-01 5 32126330 32126330 C T GOLPH3 Silent p.A295A 0.42 TCGA-DU-6392-01 5 32268851 32268851 C T MTMR12 Missense_Mutation p.R180Q 0.33 tolerated(0.21) probably_damaging(0.961) TCGA-DU-6392-01 5 32364315 32364315 G T ZFR Missense_Mutation p.L968M 0.10 tolerated(0.61) unknown(0) TCGA-DU-6392-01 5 32738972 32738972 G T NPR3 Missense_Mutation p.D299Y 0.12 deleterious(0.01) benign(0.439) TCGA-DU-6392-01 5 33576661 33576661 C A ADAMTS12 Missense_Mutation p.S1157I 0.10 deleterious(0.04) possibly_damaging(0.894) TCGA-DU-6392-01 5 33577233 33577233 A G ADAMTS12 Silent p.I966I 0.37 TCGA-DU-6392-01 5 33937928 33937928 G T RXFP3 Missense_Mutation p.Q361H 0.10 tolerated(0.2) benign(0.008) TCGA-DU-6392-01 5 33984573 33984573 C T SLC45A2 Missense_Mutation p.S39N 0.28 tolerated(0.06) probably_damaging(0.986) TCGA-DU-6392-01 5 33984677 33984677 G A SLC45A2 Silent p.N4N 0.41 TCGA-DU-6392-01 5 34803818 34803818 A G RAI14 Silent p.G89G 0.46 TCGA-DU-6392-01 5 34808726 34808726 C T RAI14 Silent p.C142C 0.40 TCGA-DU-6392-01 5 34911753 34911753 G T RAD1 Missense_Mutation p.L158M 0.41 tolerated(0.34) benign(0.169) TCGA-DU-6392-01 5 34911885 34911885 C A RAD1 Missense_Mutation p.G114C 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 35040694 35040694 G A AGXT2 Missense_Mutation p.P55S 0.35 deleterious(0.04) possibly_damaging(0.831) TCGA-DU-6392-01 5 35070320 35070320 A T PRLR Missense_Mutation p.H197Q 0.35 tolerated(0.25) benign(0.026) TCGA-DU-6392-01 5 35641674 35641674 C T SPEF2 Silent p.Y101Y 0.46 TCGA-DU-6392-01 5 35654816 35654816 C T SPEF2 Silent p.H322H 0.37 TCGA-DU-6392-01 5 35667259 35667259 C A SPEF2 Missense_Mutation p.A418D 0.42 deleterious(0) possibly_damaging(0.756) TCGA-DU-6392-01 5 35691272 35691272 C A SPEF2 Missense_Mutation p.P553H 0.07 deleterious(0) possibly_damaging(0.708) TCGA-DU-6392-01 5 35792449 35792449 A G SPEF2 Missense_Mutation p.I1485M 0.11 tolerated(0.3) probably_damaging(0.994) TCGA-DU-6392-01 5 35873728 35873728 T A IL7R Silent p.T228T 0.10 TCGA-DU-6392-01 5 35921134 35921134 C T CAPSL Missense_Mutation p.R30Q 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6392-01 5 35921206 35921206 C T CAPSL Missense_Mutation p.R6H 0.36 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 5 35954517 35954517 C A UGT3A1 Missense_Mutation p.Q453H 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-DU-6392-01 5 35954554 35954554 C A UGT3A1 Missense_Mutation p.S441I 0.15 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 5 3596444 3596444 C A IRX1 Missense_Mutation p.N75K 0.36 tolerated(0.11) benign(0.003) TCGA-DU-6392-01 5 35965820 35965820 C T UGT3A1 Missense_Mutation p.G171S 0.44 tolerated(0.39) benign(0.106) TCGA-DU-6392-01 5 36136434 36136434 C T LMBRD2 Missense_Mutation p.E242K 0.33 deleterious(0.03) possibly_damaging(0.465) TCGA-DU-6392-01 5 36137525 36137525 C T LMBRD2 Missense_Mutation p.M129I 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 5 36168426 36168426 T C SKP2 Missense_Mutation p.V183A 0.07 deleterious(0.01) possibly_damaging(0.5) TCGA-DU-6392-01 5 36976068 36976068 G T NIPBL Missense_Mutation p.K353N 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DU-6392-01 5 36985354 36985354 G A NIPBL Missense_Mutation p.G691D 0.34 deleterious_low_confidence(0.03) benign(0.073) TCGA-DU-6392-01 5 36986241 36986242 - A NIPBL Frame_Shift_Ins p.I989Nfs*5 0.15 TCGA-DU-6392-01 5 37008826 37008826 G T NIPBL Splice_Site p.X1474_splice 0.29 TCGA-DU-6392-01 5 37048693 37048693 G T NIPBL Missense_Mutation p.V2227F 0.31 deleterious(0.02) possibly_damaging(0.58) TCGA-DU-6392-01 5 37120417 37120417 G T C5orf42 Missense_Mutation p.L3017I 0.10 tolerated(0.45) benign(0.137) TCGA-DU-6392-01 5 37121769 37121769 T C C5orf42 Silent p.K2991K 0.29 TCGA-DU-6392-01 5 37148318 37148319 - T C5orf42 Frame_Shift_Ins p.T2755Nfs*8 0.40 TCGA-DU-6392-01 5 37153906 37153906 T G C5orf42 Missense_Mutation p.N2716T 0.39 tolerated(0.14) benign(0.133) TCGA-DU-6392-01 5 37169450 37169450 G A C5orf42 Missense_Mutation p.P2226S 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 37196095 37196095 G A C5orf42 Nonsense_Mutation p.R1226* 0.39 TCGA-DU-6392-01 5 37294509 37294509 G A NUP155 Silent p.F1284F 0.39 TCGA-DU-6392-01 5 37324205 37324205 T G NUP155 Missense_Mutation p.E699A 0.11 tolerated(0.1) benign(0.314) TCGA-DU-6392-01 5 37392110 37392110 G T WDR70 Nonsense_Mutation p.E62* 0.24 TCGA-DU-6392-01 5 37396660 37396660 G T WDR70 Missense_Mutation p.E160D 0.20 tolerated(0.86) benign(0.001) TCGA-DU-6392-01 5 37703146 37703146 G A WDR70 Missense_Mutation p.R458H 0.39 deleterious(0.01) benign(0.081) TCGA-DU-6392-01 5 37721297 37721297 C T WDR70 Silent p.Y499Y 0.43 TCGA-DU-6392-01 5 38435283 38435283 C T EGFLAM Silent p.G737G 0.44 TCGA-DU-6392-01 5 38925354 38925354 C T OSMR Missense_Mutation p.A698V 0.37 deleterious(0.05) benign(0.019) TCGA-DU-6392-01 5 38933358 38933358 G A OSMR Missense_Mutation p.V918M 0.15 deleterious(0.02) possibly_damaging(0.635) TCGA-DU-6392-01 5 39126168 39126168 T C FYB Silent p.K669K 0.08 TCGA-DU-6392-01 5 39202952 39202952 G A FYB Silent p.N47N 0.30 TCGA-DU-6392-01 5 39341683 39341683 G A C9 Silent p.C101C 0.30 TCGA-DU-6392-01 5 39375182 39375182 G T DAB2 Missense_Mutation p.A751D 0.09 tolerated(0.64) benign(0.066) TCGA-DU-6392-01 5 39383090 39383090 G A DAB2 Missense_Mutation p.S324L 0.31 tolerated(0.73) benign(0) TCGA-DU-6392-01 5 40681118 40681118 C T PTGER4 Missense_Mutation p.S8L 0.09 tolerated(0.14) benign(0.002) TCGA-DU-6392-01 5 40765006 40765006 G A PRKAA1 Missense_Mutation p.R401C 0.45 deleterious(0.04) probably_damaging(0.961) TCGA-DU-6392-01 5 40853382 40853382 G A CARD6 Missense_Mutation p.A650T 0.37 deleterious(0.02) possibly_damaging(0.801) TCGA-DU-6392-01 5 40964872 40964872 A C C7 Missense_Mutation p.K593N 0.34 tolerated(0.19) benign(0.062) TCGA-DU-6392-01 5 40979852 40979852 G T C7 Missense_Mutation p.D731Y 0.42 tolerated(0.15) possibly_damaging(0.799) TCGA-DU-6392-01 5 41000856 41000856 A C MROH2B Missense_Mutation p.F1425C 0.63 deleterious(0.01) probably_damaging(0.956) TCGA-DU-6392-01 5 41012745 41012745 C A MROH2B Missense_Mutation p.K1025N 0.39 deleterious(0.03) benign(0.001) TCGA-DU-6392-01 5 41149403 41149403 T C C6 Missense_Mutation p.N855D 0.37 tolerated(0.16) benign(0.01) TCGA-DU-6392-01 5 41176734 41176734 G T C6 Silent p.V337V 0.09 TCGA-DU-6392-01 5 41381941 41381941 T G PLCXD3 Missense_Mutation p.T267P 0.38 tolerated(0.09) possibly_damaging(0.837) TCGA-DU-6392-01 5 41382049 41382049 C A PLCXD3 Missense_Mutation p.A231S 0.47 tolerated(0.14) benign(0.002) TCGA-DU-6392-01 5 41382286 41382286 T A PLCXD3 Nonsense_Mutation p.K152* 0.38 TCGA-DU-6392-01 5 41803250 41803250 C T OXCT1 Missense_Mutation p.G324E 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 5 41904531 41904531 C T C5orf51 Missense_Mutation p.A21V 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.794) TCGA-DU-6392-01 5 42695035 42695035 A G GHR Missense_Mutation p.T95A 0.35 tolerated(0.13) benign(0.096) TCGA-DU-6392-01 5 42711316 42711316 C A GHR Missense_Mutation p.P209H 0.08 tolerated(0.64) probably_damaging(0.975) TCGA-DU-6392-01 5 42801096 42801096 G A SEPP1 Missense_Mutation p.T291I 0.35 deleterious_low_confidence(0) benign(0) TCGA-DU-6392-01 5 42801186 42801186 C T SEPP1 Missense_Mutation p.R261Q 0.47 tolerated_low_confidence(0.61) benign(0.021) TCGA-DU-6392-01 5 42806949 42806949 C T SEPP1 Intron 0.25 TCGA-DU-6392-01 5 43245730 43245730 C T NIM1K 5'UTR 0.20 TCGA-DU-6392-01 5 43245860 43245860 C T NIM1K 5'UTR 0.30 TCGA-DU-6392-01 5 432971 432971 G A AHRR Missense_Mutation p.A363T 0.31 tolerated(0.5) benign(0.013) TCGA-DU-6392-01 5 43298869 43298869 A T HMGCS1 Missense_Mutation p.S67T 0.39 deleterious(0.02) possibly_damaging(0.789) TCGA-DU-6392-01 5 43381872 43381872 A G CCL28 3'UTR 0.38 TCGA-DU-6392-01 5 434145 434145 C T AHRR Silent p.P452P 0.38 TCGA-DU-6392-01 5 43446317 43446317 G A C5orf28 3'UTR 0.53 TCGA-DU-6392-01 5 43506021 43506021 G T C5orf34 Missense_Mutation p.P254H 0.12 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 43609301 43609301 G A NNT Missense_Mutation p.A2T 0.39 deleterious_low_confidence(0) benign(0.005) TCGA-DU-6392-01 5 43655960 43655960 G A NNT Missense_Mutation p.R693H 0.35 deleterious(0) probably_damaging(0.937) TCGA-DU-6392-01 5 43656860 43656860 G T NNT Missense_Mutation p.S800I 0.43 deleterious(0.02) possibly_damaging(0.736) TCGA-DU-6392-01 5 442595 442595 C T C5orf55 Missense_Mutation p.A115T 0.09 tolerated_low_confidence(0.17) possibly_damaging(0.682) TCGA-DU-6392-01 5 44809028 44809028 C T MRPS30 5'UTR 0.38 TCGA-DU-6392-01 5 45262378 45262378 G A HCN1 Missense_Mutation p.A773V 0.31 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-DU-6392-01 5 457018 457018 G A EXOC3 Missense_Mutation p.R354K 0.38 tolerated(0.41) benign(0.015) TCGA-DU-6392-01 5 476767 476767 A G SLC9A3 Missense_Mutation p.V594A 0.30 tolerated(0.21) possibly_damaging(0.521) TCGA-DU-6392-01 5 479971 479971 C T SLC9A3 Missense_Mutation p.A543T 0.44 deleterious(0) probably_damaging(0.921) TCGA-DU-6392-01 5 480133 480133 C T SLC9A3 Intron 0.50 TCGA-DU-6392-01 5 50123879 50123879 C A PARP8 Silent p.T693T 0.10 TCGA-DU-6392-01 5 50125766 50125766 C T PARP8 Missense_Mutation p.P735L 0.33 deleterious(0) probably_damaging(0.924) TCGA-DU-6392-01 5 50680528 50680528 G T ISL1 Missense_Mutation p.R61M 0.36 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 5 50689494 50689494 A G ISL1 3'UTR 0.31 TCGA-DU-6392-01 5 5190119 5190119 C A ADAMTS16 Silent p.T361T 0.10 TCGA-DU-6392-01 5 52216289 52216289 C A ITGA1 Missense_Mutation p.F761L 0.44 tolerated(0.09) benign(0.367) TCGA-DU-6392-01 5 52227879 52227879 A T ITGA1 Missense_Mutation p.D925V 0.23 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 5 52337985 52337985 A G ITGA2 Missense_Mutation p.M77V 0.32 deleterious(0.04) benign(0.384) TCGA-DU-6392-01 5 5235133 5235133 G A ADAMTS16 Silent p.S619S 0.32 TCGA-DU-6392-01 5 5237190 5237190 T C ADAMTS16 Missense_Mutation p.V711A 0.36 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 5 52376351 52376351 G T ITGA2 Missense_Mutation p.G980V 0.32 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 5 52376441 52376441 A - ITGA2 Frame_Shift_Del p.T1011Qfs*16 0.10 TCGA-DU-6392-01 5 52379220 52379220 T C ITGA2 Silent p.V1065V 0.38 TCGA-DU-6392-01 5 52397956 52397956 G A MOCS2 Missense_Mutation p.P66L 0.17 deleterious(0.02) benign(0.159) TCGA-DU-6392-01 5 52397989 52397990 - A MOCS2 Frame_Shift_Ins p.S55Ffs*4 0.33 TCGA-DU-6392-01 5 52779374 52779374 C T FST Silent p.C106C 0.21 TCGA-DU-6392-01 5 53409155 53409155 C A ARL15 Missense_Mutation p.E113D 0.36 tolerated(0.38) benign(0.044) TCGA-DU-6392-01 5 5462688 5462688 G A KIAA0947 Missense_Mutation p.E1081K 0.36 tolerated(0.05) benign(0.287) TCGA-DU-6392-01 5 54640973 54640973 G A SKIV2L2 Missense_Mutation p.A353T 0.40 tolerated(0.17) benign(0.072) TCGA-DU-6392-01 5 5464275 5464275 A G KIAA0947 Missense_Mutation p.T1610A 0.08 deleterious(0.02) possibly_damaging(0.758) TCGA-DU-6392-01 5 5464590 5464590 C T KIAA0947 Nonsense_Mutation p.Q1715* 0.37 TCGA-DU-6392-01 5 54763817 54763817 C T PPAP2A Missense_Mutation p.G125D 0.46 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 5 54763910 54763910 T G PPAP2A Missense_Mutation p.N94T 0.08 tolerated(0.18) benign(0.149) TCGA-DU-6392-01 5 54929684 54929684 G A SLC38A9 Missense_Mutation p.A443V 0.43 deleterious(0) possibly_damaging(0.887) TCGA-DU-6392-01 5 55075867 55075867 G A DDX4 Missense_Mutation p.R157H 0.22 tolerated(0.11) benign(0.003) TCGA-DU-6392-01 5 55086459 55086459 C T DDX4 Nonsense_Mutation p.R410* 0.38 TCGA-DU-6392-01 5 55206493 55206493 G A IL31RA Silent p.L545L 0.08 TCGA-DU-6392-01 5 55265611 55265611 G A IL6ST Missense_Mutation p.A46V 0.36 deleterious(0) possibly_damaging(0.83) TCGA-DU-6392-01 5 56160646 56160646 G A MAP3K1 Missense_Mutation p.R307H 0.15 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 5 57750455 57750456 - T PLK2 Frame_Shift_Ins p.N671Kfs*15 0.27 TCGA-DU-6392-01 5 57751143 57751143 A C PLK2 Missense_Mutation p.F575C 0.06 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 5 57751594 57751594 C A PLK2 Missense_Mutation p.S466I 0.09 tolerated(0.4) benign(0.008) TCGA-DU-6392-01 5 57751887 57751887 T C PLK2 Silent p.R450R 0.19 TCGA-DU-6392-01 5 57790694 57790694 C T GAPT Silent p.L111L 0.37 TCGA-DU-6392-01 5 58271516 58271516 C T PDE4D Missense_Mutation p.D661N 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-6392-01 5 59064130 59064130 C A PDE4D Intron 0.43 TCGA-DU-6392-01 5 59064151 59064151 T G PDE4D Intron 0.45 TCGA-DU-6392-01 5 60053414 60053414 G T ELOVL7 Silent p.S186S 0.09 TCGA-DU-6392-01 5 60455722 60455722 C T SMIM15 3'UTR 0.34 TCGA-DU-6392-01 5 6312523 6312523 C T CTD-2324F15.2 RNA 0.38 TCGA-DU-6392-01 5 63256975 63256975 T G HTR1A Missense_Mutation p.K191T 0.07 deleterious(0) possibly_damaging(0.665) TCGA-DU-6392-01 5 64748588 64748588 C A ADAMTS6 Silent p.V263V 0.34 TCGA-DU-6392-01 5 64887632 64887632 C T TRIM23 Silent p.R563R 0.37 TCGA-DU-6392-01 5 65473450 65473450 G A SREK1 Silent p.G563G 0.38 TCGA-DU-6392-01 5 65474763 65474763 G T SREK1 3'UTR 0.43 TCGA-DU-6392-01 5 6620216 6620216 T C NSUN2 Intron 0.25 TCGA-DU-6392-01 5 6632715 6632715 T C NSUN2 Missense_Mutation p.K84R 0.10 tolerated(0.13) benign(0.029) TCGA-DU-6392-01 5 66426196 66426196 G T MAST4 Missense_Mutation p.C635F 0.11 probably_damaging(0.998) TCGA-DU-6392-01 5 66430419 66430419 C T MAST4 Silent p.D765D 0.10 TCGA-DU-6392-01 5 66459617 66459617 T C MAST4 Missense_Mutation p.V1537A 0.55 benign(0.359) TCGA-DU-6392-01 5 66478853 66478853 C T CD180 Silent p.T606T 0.36 TCGA-DU-6392-01 5 66480139 66480139 G T CD180 Missense_Mutation p.L178M 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 5 66481846 66481846 C A CD180 Splice_Site p.X31_splice 0.37 TCGA-DU-6392-01 5 665175 665175 G A TPPP 3'UTR 0.43 TCGA-DU-6392-01 5 6746508 6746508 C T PAPD7 Missense_Mutation p.S226L 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 6755064 6755064 C A PAPD7 3'UTR 0.27 TCGA-DU-6392-01 5 678081 678081 G A TPPP Missense_Mutation p.S32L 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.626) TCGA-DU-6392-01 5 68408995 68408995 C A SLC30A5 Missense_Mutation p.A159D 0.20 deleterious(0) benign(0.05) TCGA-DU-6392-01 5 68490518 68490518 G A CENPH Missense_Mutation p.E79K 0.40 deleterious(0.02) benign(0.025) TCGA-DU-6392-01 5 68513628 68513628 G A MRPS36 5'UTR 0.45 TCGA-DU-6392-01 5 68550442 68550442 C T CDK7 Silent p.T58T 0.21 TCGA-DU-6392-01 5 68616261 68616261 G T CCDC125 Missense_Mutation p.P36H 0.09 tolerated(0.06) probably_damaging(0.998) TCGA-DU-6392-01 5 68647899 68647899 G T RP11-1113N2.4 3'Flank 0.16 TCGA-DU-6392-01 5 68648055 68648055 C A RP11-1113N2.4 3'Flank 0.08 TCGA-DU-6392-01 5 68687668 68687668 C T RAD17 Silent p.N350N 0.12 TCGA-DU-6392-01 5 68695879 68695879 C T RAD17 Missense_Mutation p.R537W 0.31 deleterious(0.04) benign(0.149) TCGA-DU-6392-01 5 68715327 68715327 C T MARVELD2 Missense_Mutation p.R39W 0.40 deleterious(0.02) possibly_damaging(0.462) TCGA-DU-6392-01 5 68715761 68715761 C A MARVELD2 Nonsense_Mutation p.Y183* 0.27 TCGA-DU-6392-01 5 68715841 68715841 G C MARVELD2 Missense_Mutation p.C210S 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 68716065 68716065 G A MARVELD2 Missense_Mutation p.D285N 0.44 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 5 68728780 68728780 C T MARVELD2 Nonsense_Mutation p.R455* 0.39 TCGA-DU-6392-01 5 68805040 68805040 G A OCLN Silent p.Q41Q 0.33 TCGA-DU-6392-01 5 68805114 68805114 G A OCLN Missense_Mutation p.R66Q 0.41 deleterious(0.01) possibly_damaging(0.54) TCGA-DU-6392-01 5 68849639 68849639 G T OCLN 3'UTR 0.31 TCGA-DU-6392-01 5 70791221 70791221 A - BDP1 Frame_Shift_Del p.N597Ifs*16 0.28 TCGA-DU-6392-01 5 70798476 70798476 G T BDP1 Missense_Mutation p.R700I 0.38 deleterious(0) possibly_damaging(0.603) TCGA-DU-6392-01 5 70837939 70837939 A C BDP1 Missense_Mutation p.I2087L 0.31 tolerated(0.12) benign(0.002) TCGA-DU-6392-01 5 70900290 70900290 G A MCCC2 Missense_Mutation p.A207T 0.38 tolerated_low_confidence(0.1) benign(0.007) TCGA-DU-6392-01 5 70922494 70922494 G A MCCC2 Missense_Mutation p.A218T 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-6392-01 5 70945895 70945895 G T MCCC2 Splice_Site p.X458_splice 0.39 TCGA-DU-6392-01 5 71482482 71482482 C T MAP1B Silent p.L137L 0.39 TCGA-DU-6392-01 5 71490623 71490623 G A MAP1B Missense_Mutation p.A481T 0.09 unknown(0) TCGA-DU-6392-01 5 71491726 71491726 C T MAP1B Silent p.V848V 0.40 TCGA-DU-6392-01 5 71492953 71492953 G A MAP1B Silent p.P1257P 0.36 TCGA-DU-6392-01 5 71494288 71494288 G T MAP1B Missense_Mutation p.K1702N 0.31 probably_damaging(0.962) TCGA-DU-6392-01 5 71495246 71495246 G T MAP1B Missense_Mutation p.G2022C 0.06 benign(0.004) TCGA-DU-6392-01 5 71496185 71496185 G A MAP1B Missense_Mutation p.A2335T 0.08 benign(0.126) TCGA-DU-6392-01 5 71516782 71516782 G A MRPS27 Missense_Mutation p.A400V 0.47 deleterious(0.01) unknown(0) TCGA-DU-6392-01 5 71528293 71528293 G T MRPS27 Missense_Mutation p.L190M 0.29 tolerated(0.08) probably_damaging(0.996) TCGA-DU-6392-01 5 71739619 71739619 C T ZNF366 Silent p.R733R 0.12 TCGA-DU-6392-01 5 71739898 71739898 C A ZNF366 Missense_Mutation p.Q640H 0.12 tolerated_low_confidence(0.22) benign(0.087) TCGA-DU-6392-01 5 71756469 71756469 G T ZNF366 Missense_Mutation p.H285Q 0.37 tolerated(0.67) benign(0.004) TCGA-DU-6392-01 5 72171523 72171523 C T TNPO1 Nonsense_Mutation p.R254* 0.39 TCGA-DU-6392-01 5 72185660 72185660 A G TNPO1 Missense_Mutation p.Y526C 0.44 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 5 72199591 72199591 T C TNPO1 Missense_Mutation p.L857P 0.32 deleterious(0) possibly_damaging(0.865) TCGA-DU-6392-01 5 72858427 72858427 G T ANKRA2 Missense_Mutation p.L94I 0.09 deleterious(0.04) probably_damaging(0.978) TCGA-DU-6392-01 5 72863099 72863099 G T UTP15 5'UTR 0.10 TCGA-DU-6392-01 5 73161801 73161801 G A ARHGEF28 Silent p.E705E 0.54 TCGA-DU-6392-01 5 73931595 73931595 G A ENC1 Missense_Mutation p.A239V 0.89 tolerated(0.08) possibly_damaging(0.849) TCGA-DU-6392-01 5 73931761 73931761 C A ENC1 Missense_Mutation p.D184Y 0.39 deleterious(0) probably_damaging(0.97) TCGA-DU-6392-01 5 74324682 74324682 C T GCNT4 Missense_Mutation p.G394E 0.47 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 74325630 74325630 T G GCNT4 Missense_Mutation p.E78A 0.44 deleterious(0.02) possibly_damaging(0.735) TCGA-DU-6392-01 5 74650486 74650486 C T HMGCR Silent p.L509L 0.48 TCGA-DU-6392-01 5 74892160 74892160 G T POLK Nonsense_Mutation p.E548* 0.10 TCGA-DU-6392-01 5 75427575 75427575 G T SV2C 5'UTR 0.09 TCGA-DU-6392-01 5 75427914 75427914 G A SV2C Silent p.K113K 0.21 TCGA-DU-6392-01 5 75621360 75621360 G T SV2C Missense_Mutation p.Q724H 0.39 tolerated(0.11) possibly_damaging(0.839) TCGA-DU-6392-01 5 75902110 75902110 A G IQGAP2 Missense_Mutation p.I447V 0.38 tolerated(1) benign(0.05) TCGA-DU-6392-01 5 75919117 75919117 T C F2RL2 5'UTR 0.31 TCGA-DU-6392-01 5 75927843 75927843 C T IQGAP2 Missense_Mutation p.S591F 0.44 deleterious(0.03) benign(0.005) TCGA-DU-6392-01 5 75967619 75967619 G A IQGAP2 Missense_Mutation p.G960D 0.44 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 5 75969777 75969777 T C IQGAP2 Silent p.P1070P 0.08 TCGA-DU-6392-01 5 76173749 76173749 A G S100Z Intron 0.58 TCGA-DU-6392-01 5 76254685 76254685 C A CRHBP Missense_Mutation p.L222M 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-DU-6392-01 5 77004141 77004141 C A TBCA Nonsense_Mutation p.E29* 0.12 TCGA-DU-6392-01 5 7706895 7706895 G A ADCY2 Missense_Mutation p.R383H 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 77784561 77784561 C T LHFPL2 3'UTR 0.42 TCGA-DU-6392-01 5 7816988 7816988 C T ADCY2 Missense_Mutation p.R965W 0.28 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 5 7817086 7817086 G A ADCY2 Silent p.L997L 0.32 TCGA-DU-6392-01 5 78293829 78293829 C T DMGDH 3'UTR 0.46 TCGA-DU-6392-01 5 78379191 78379191 C A BHMT2 Missense_Mutation p.P259T 0.15 deleterious(0.01) possibly_damaging(0.848) TCGA-DU-6392-01 5 78407645 78407645 G A BHMT 5'UTR 0.25 TCGA-DU-6392-01 5 78610358 78610358 T C JMY Silent p.P781P 0.06 TCGA-DU-6392-01 5 7878150 7878150 C T MTRR Silent p.G192G 0.41 TCGA-DU-6392-01 5 78975427 78975427 C T PAPD4 Missense_Mutation p.R412C 0.34 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 5 79029268 79029268 A C CMYA5 Missense_Mutation p.K1560N 0.42 benign(0.108) TCGA-DU-6392-01 5 79355669 79355669 T C THBS4 Missense_Mutation p.C310R 0.33 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 5 79357584 79357584 G A THBS4 Missense_Mutation p.A352T 0.09 tolerated(0.09) benign(0.003) TCGA-DU-6392-01 5 79616311 79616311 G T SPZ1 Missense_Mutation p.A93S 0.32 tolerated(0.08) benign(0.337) TCGA-DU-6392-01 5 79617030 79617030 G A SPZ1 Silent p.Q332Q 0.46 TCGA-DU-6392-01 5 79617181 79617181 A G SPZ1 Missense_Mutation p.M383V 0.38 tolerated(0.85) benign(0.006) TCGA-DU-6392-01 5 79855332 79855332 C T ANKRD34B Missense_Mutation p.M169I 0.34 tolerated(0.09) benign(0.02) TCGA-DU-6392-01 5 79952298 79952298 G T MSH3 Missense_Mutation p.K102N 0.39 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-DU-6392-01 5 80382721 80382721 G A RASGRF2 Missense_Mutation p.V447M 0.10 deleterious(0) probably_damaging(0.932) TCGA-DU-6392-01 5 80559355 80559355 C T CKMT2 Missense_Mutation p.R354C 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 5 80946145 80946145 C T SSBP2 Missense_Mutation p.V26I 0.27 tolerated(0.07) benign(0.322) TCGA-DU-6392-01 5 82817011 82817011 G T VCAN Missense_Mutation p.E962D 0.36 tolerated(0.13) benign(0.11) TCGA-DU-6392-01 5 82834120 82834120 T G VCAN Missense_Mutation p.D1766E 0.33 tolerated(0.36) benign(0.143) TCGA-DU-6392-01 5 82835797 82835797 G A VCAN Silent p.G2325G 0.40 TCGA-DU-6392-01 5 82836002 82836002 A G VCAN Missense_Mutation p.T2394A 0.20 tolerated(0.54) benign(0.003) TCGA-DU-6392-01 5 82837275 82837275 C T VCAN Missense_Mutation p.A2818V 0.17 tolerated(0.21) benign(0.14) TCGA-DU-6392-01 5 83433159 83433159 G A EDIL3 Silent p.C123C 0.40 TCGA-DU-6392-01 5 86627205 86627205 C T RASA1 Missense_Mutation p.R194C 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-DU-6392-01 5 86690887 86690887 C T CCNH Missense_Mutation p.V303I 0.30 tolerated(0.43) benign(0.009) TCGA-DU-6392-01 5 86707051 86707051 C T CCNH Missense_Mutation p.R77K 0.38 tolerated(1) benign(0.001) TCGA-DU-6392-01 5 86708435 86708435 T C CCNH Intron 0.33 TCGA-DU-6392-01 5 89939703 89939703 G T GPR98 Silent p.T879T 0.38 TCGA-DU-6392-01 5 89953850 89953850 G A GPR98 Missense_Mutation p.A1503T 0.37 possibly_damaging(0.821) TCGA-DU-6392-01 5 89988577 89988577 C T GPR98 Silent p.S2369S 0.21 TCGA-DU-6392-01 5 89989955 89989955 C T GPR98 Missense_Mutation p.P2461L 0.53 benign(0.029) TCGA-DU-6392-01 5 90001396 90001396 G T GPR98 Nonsense_Mutation p.G2856* 0.13 TCGA-DU-6392-01 5 90021442 90021442 C T GPR98 Missense_Mutation p.A3377V 0.08 benign(0.017) TCGA-DU-6392-01 5 90052412 90052412 G A GPR98 Missense_Mutation p.D3908N 0.25 probably_damaging(0.959) TCGA-DU-6392-01 5 90052921 90052921 T G GPR98 Missense_Mutation p.S3961R 0.25 possibly_damaging(0.604) TCGA-DU-6392-01 5 90074889 90074889 A C GPR98 Missense_Mutation p.I4353L 0.43 benign(0.394) TCGA-DU-6392-01 5 901528 901528 C T TRIP13 Missense_Mutation p.R173W 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 5 9052040 9052040 G A SEMA5A Silent p.C930C 0.46 TCGA-DU-6392-01 5 93076611 93076611 C T POU5F2 Missense_Mutation p.R220Q 0.34 tolerated(0.08) benign(0.252) TCGA-DU-6392-01 5 93076630 93076630 G A POU5F2 Missense_Mutation p.R214W 0.35 deleterious(0) probably_damaging(0.92) TCGA-DU-6392-01 5 93076929 93076929 G A POU5F2 Missense_Mutation p.P114L 0.32 tolerated(0.11) possibly_damaging(0.726) TCGA-DU-6392-01 5 93300165 93300165 G T FAM172A Missense_Mutation p.P125T 0.33 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 5 93872794 93872794 T G KIAA0825 Missense_Mutation p.D13A 0.11 tolerated(0.06) probably_damaging(0.981) TCGA-DU-6392-01 5 94024299 94024299 G A ANKRD32 Missense_Mutation p.C737Y 0.12 deleterious(0.05) benign(0.235) TCGA-DU-6392-01 5 94417220 94417220 C T MCTP1 Intron 0.29 TCGA-DU-6392-01 5 94858910 94858910 C T TTC37 Missense_Mutation p.A585T 0.31 deleterious(0.01) possibly_damaging(0.861) TCGA-DU-6392-01 5 94872782 94872782 C T TTC37 Missense_Mutation p.V203I 0.35 tolerated(0.21) benign(0.001) TCGA-DU-6392-01 5 95730650 95730650 A G PCSK1 Missense_Mutation p.M601T 0.16 tolerated(0.06) possibly_damaging(0.786) TCGA-DU-6392-01 5 96112003 96112003 C A ERAP1 Intron 0.26 TCGA-DU-6392-01 5 9629871 9629871 C T TAS2R1 Missense_Mutation p.E92K 0.35 tolerated(0.1) benign(0.065) TCGA-DU-6392-01 5 96329619 96329619 T C LNPEP Missense_Mutation p.S451P 0.06 deleterious(0.04) probably_damaging(1) TCGA-DU-6392-01 5 96443187 96443187 G A LIX1 Silent p.A88A 0.43 TCGA-DU-6392-01 5 96514768 96514768 G T RIOK2 Missense_Mutation p.R66S 0.20 deleterious(0.02) benign(0.175) TCGA-DU-6392-01 5 98193992 98193992 C T CHD1 Missense_Mutation p.R1560Q 0.36 tolerated(0.13) benign(0.022) TCGA-DU-6392-01 5 98209391 98209391 A G CHD1 Silent p.D1159D 0.38 TCGA-DU-6392-01 6 100009529 100009529 T C CCNC Silent p.K56K 0.09 TCGA-DU-6392-01 6 100841384 100841384 C T SIM1 Missense_Mutation p.A517T 0.39 tolerated_low_confidence(0.72) benign(0.001) TCGA-DU-6392-01 6 101247437 101247437 A C ASCC3 Missense_Mutation p.L380R 0.08 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 6 10430257 10430257 T A LINC00518 RNA 0.08 TCGA-DU-6392-01 6 105244881 105244881 C A HACE1 Missense_Mutation p.A213S 0.20 deleterious(0.05) possibly_damaging(0.858) TCGA-DU-6392-01 6 105291136 105291136 C T HACE1 Missense_Mutation p.A122T 0.24 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 105548845 105548845 G A BVES 3'UTR 0.50 TCGA-DU-6392-01 6 10556805 10556805 C T GCNT2 Intron 0.27 TCGA-DU-6392-01 6 105607695 105607695 C A POPDC3 Splice_Site p.X162_splice 0.43 TCGA-DU-6392-01 6 105609839 105609839 G T POPDC3 5'UTR 0.36 TCGA-DU-6392-01 6 105800935 105800935 G T PREP Silent p.R245R 0.07 TCGA-DU-6392-01 6 106554794 106554794 C T PRDM1 Silent p.H637H 0.11 TCGA-DU-6392-01 6 106968990 106968990 C A AIM1 Missense_Mutation p.L895I 0.35 tolerated(0.12) benign(0.237) TCGA-DU-6392-01 6 10697569 10697569 G A PAK1IP1 Missense_Mutation p.V33M 0.13 tolerated(0.08) possibly_damaging(0.841) TCGA-DU-6392-01 6 107113856 107113856 C A QRSL1 Silent p.A522A 0.38 TCGA-DU-6392-01 6 107372330 107372330 C T C6orf203 Missense_Mutation p.R210W 0.44 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 6 107390158 107390158 C T BEND3 Missense_Mutation p.R746H 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 107390799 107390799 C T BEND3 Silent p.V532V 0.39 TCGA-DU-6392-01 6 107390913 107390913 C T BEND3 Silent p.P494P 0.18 TCGA-DU-6392-01 6 107827511 107827511 G T SOBP Missense_Mutation p.G101C 0.09 tolerated(0.08) possibly_damaging(0.792) TCGA-DU-6392-01 6 108070930 108070930 C T SCML4 Missense_Mutation p.A82T 0.09 tolerated(0.11) benign(0.046) TCGA-DU-6392-01 6 108497746 108497746 G A NR2E1 Missense_Mutation p.R100H 0.28 deleterious(0.01) benign(0.164) TCGA-DU-6392-01 6 108687461 108687461 A G LACE1 Missense_Mutation p.I225V 0.08 tolerated(0.07) possibly_damaging(0.874) TCGA-DU-6392-01 6 10874354 10874354 G A GCM2 Silent p.H465H 0.33 TCGA-DU-6392-01 6 10876185 10876185 G A GCM2 Missense_Mutation p.A174V 0.39 tolerated(0.05) possibly_damaging(0.522) TCGA-DU-6392-01 6 10906267 10906267 G T SYCP2L Missense_Mutation p.R219M 0.07 tolerated(0.05) benign(0.228) TCGA-DU-6392-01 6 109321740 109321740 T A SESN1 Missense_Mutation p.K228I 0.14 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 109700818 109700818 C T CD164 Missense_Mutation p.V75I 0.24 tolerated(1) benign(0.001) TCGA-DU-6392-01 6 109748356 109748356 C A PPIL6 Missense_Mutation p.D142Y 0.22 deleterious(0.04) benign(0.367) TCGA-DU-6392-01 6 109767545 109767545 G A MICAL1 Missense_Mutation p.A792V 0.36 tolerated(0.22) benign(0.002) TCGA-DU-6392-01 6 109769590 109769590 G T MICAL1 Silent p.P557P 0.09 TCGA-DU-6392-01 6 109775385 109775385 G T MICAL1 Silent p.T5T 0.40 TCGA-DU-6392-01 6 109814755 109814755 G A AK9 Silent p.S1851S 0.38 TCGA-DU-6392-01 6 110301030 110301030 G A GPR6 Missense_Mutation p.G239S 0.26 deleterious(0.04) benign(0.065) TCGA-DU-6392-01 6 110423283 110423283 T C WASF1 Missense_Mutation p.M344V 0.40 tolerated(0.38) unknown(0) TCGA-DU-6392-01 6 110551368 110551368 T G CDC40 3'UTR 0.15 TCGA-DU-6392-01 6 110953232 110953232 C T CDK19 Splice_Site p.X216_splice 0.24 TCGA-DU-6392-01 6 111587087 111587087 G A KIAA1919 Missense_Mutation p.V108I 0.33 tolerated(0.09) benign(0.075) TCGA-DU-6392-01 6 111587479 111587480 - T KIAA1919 Frame_Shift_Ins p.Y241Lfs*5 0.43 TCGA-DU-6392-01 6 111587679 111587679 G A KIAA1919 Missense_Mutation p.S305N 0.10 deleterious(0.01) benign(0.156) TCGA-DU-6392-01 6 111695487 111695488 - T REV3L Frame_Shift_Ins p.N1357Kfs*4 0.34 TCGA-DU-6392-01 6 111697474 111697474 C T REV3L Missense_Mutation p.R695H 0.36 tolerated_low_confidence(0.18) benign(0.007) TCGA-DU-6392-01 6 111887723 111887723 T C TRAF3IP2 Missense_Mutation p.K467R 0.39 tolerated(0.1) probably_damaging(1) TCGA-DU-6392-01 6 11191146 11191146 A G NEDD9 Missense_Mutation p.V319A 0.36 deleterious(0.01) benign(0.066) TCGA-DU-6392-01 6 111983139 111983139 G A FYN Missense_Mutation p.R473W 0.12 deleterious(0.05) probably_damaging(0.965) TCGA-DU-6392-01 6 112390780 112390780 G A WISP3 Missense_Mutation p.C359Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 112499372 112499372 G A LAMA4 Silent p.H380H 0.36 TCGA-DU-6392-01 6 112535229 112535229 A C LAMA4 Intron 0.38 TCGA-DU-6392-01 6 112575078 112575078 G A LAMA4 Intron 0.33 TCGA-DU-6392-01 6 112670865 112670865 G A RFPL4B 5'UTR 0.33 TCGA-DU-6392-01 6 114279819 114279819 G A HDAC2 Nonsense_Mutation p.Q93* 0.37 TCGA-DU-6392-01 6 116600638 116600638 C T TSPYL1 Missense_Mutation p.R119H 0.31 tolerated(0.25) benign(0.021) TCGA-DU-6392-01 6 116720538 116720538 G T DSE Missense_Mutation p.S42I 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.656) TCGA-DU-6392-01 6 116833441 116833441 C T TRAPPC3L Intron 0.21 TCGA-DU-6392-01 6 116948877 116948877 G A RSPH4A Missense_Mutation p.R336H 0.36 tolerated(0.1) possibly_damaging(0.48) TCGA-DU-6392-01 6 116949302 116949302 G T RSPH4A Nonsense_Mutation p.G478* 0.26 TCGA-DU-6392-01 6 116973311 116973311 C T ZUFSP Missense_Mutation p.D336N 0.40 deleterious(0) benign(0.272) TCGA-DU-6392-01 6 116988279 116988279 T A ZUFSP Missense_Mutation p.E26V 0.08 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 6 117045503 117045503 G A KPNA5 Missense_Mutation p.G322S 0.45 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 6 117246731 117246731 C A RFX6 Silent p.T598T 0.47 TCGA-DU-6392-01 6 117681540 117681540 C T ROS1 Missense_Mutation p.G1137E 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 6 11779017 11779017 G A ADTRP 5'UTR 0.34 TCGA-DU-6392-01 6 119232882 119232882 G A MCM9 Silent p.F361F 0.38 TCGA-DU-6392-01 6 119295646 119295646 A C FAM184A Missense_Mutation p.D954E 0.39 tolerated(0.27) benign(0.078) TCGA-DU-6392-01 6 119501064 119501064 G A MAN1A1 Missense_Mutation p.H628Y 0.35 deleterious(0.02) benign(0.102) TCGA-DU-6392-01 6 119669662 119669662 G A MAN1A1 Missense_Mutation p.A190V 0.41 deleterious(0.02) benign(0) TCGA-DU-6392-01 6 12120714 12120714 C A HIVEP1 Missense_Mutation p.T229N 0.09 deleterious(0.01) possibly_damaging(0.898) TCGA-DU-6392-01 6 12120776 12120776 G A HIVEP1 Missense_Mutation p.E250K 0.36 tolerated(0.17) possibly_damaging(0.735) TCGA-DU-6392-01 6 12122175 12122175 C T HIVEP1 Missense_Mutation p.T716M 0.46 tolerated(0.06) possibly_damaging(0.724) TCGA-DU-6392-01 6 12122570 12122570 T C HIVEP1 Missense_Mutation p.S848P 0.07 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 12123223 12123223 C A HIVEP1 Silent p.G1065G 0.32 TCGA-DU-6392-01 6 121427277 121427277 G A TBC1D32 Silent p.G1119G 0.06 TCGA-DU-6392-01 6 12164453 12164453 C T HIVEP1 Missense_Mutation p.A2639V 0.32 tolerated(0.28) benign(0.272) TCGA-DU-6392-01 6 121768052 121768052 C T GJA1 Missense_Mutation p.A20V 0.42 tolerated(1) benign(0.171) TCGA-DU-6392-01 6 121768220 121768220 G A GJA1 Missense_Mutation p.R76H 0.45 deleterious(0) probably_damaging(0.975) TCGA-DU-6392-01 6 121768987 121768987 G A GJA1 Missense_Mutation p.A332T 0.43 tolerated(0.31) benign(0.006) TCGA-DU-6392-01 6 123104897 123104897 C A FABP7 Missense_Mutation p.H128Q 0.11 tolerated(0.05) benign(0.008) TCGA-DU-6392-01 6 125574876 125574876 C A TPD52L1 Missense_Mutation p.H134N 0.32 deleterious(0.03) probably_damaging(0.96) TCGA-DU-6392-01 6 125584090 125584090 G A TPD52L1 Silent p.E199E 0.33 TCGA-DU-6392-01 6 125614012 125614012 C A HDDC2 Missense_Mutation p.R118I 0.32 tolerated(0.07) benign(0.039) TCGA-DU-6392-01 6 126210549 126210549 C A NCOA7 Missense_Mutation p.A450D 0.44 tolerated_low_confidence(0.16) benign(0.002) TCGA-DU-6392-01 6 126236496 126236496 C T NCOA7 Missense_Mutation p.T705I 0.08 deleterious(0.03) benign(0.126) TCGA-DU-6392-01 6 126242113 126242113 C T NCOA7 Missense_Mutation p.R757C 0.32 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 6 126243846 126243846 G A NCOA7 Missense_Mutation p.A797T 0.45 tolerated(0.05) probably_damaging(0.978) TCGA-DU-6392-01 6 126342392 126342392 G A TRMT11 Missense_Mutation p.R409H 0.34 deleterious(0.01) possibly_damaging(0.83) TCGA-DU-6392-01 6 126360054 126360054 G A TRMT11 3'UTR 0.29 TCGA-DU-6392-01 6 126667456 126667456 G A CENPW Missense_Mutation p.A78T 0.10 deleterious(0.01) possibly_damaging(0.755) TCGA-DU-6392-01 6 127607801 127607801 C T RNF146 Missense_Mutation p.L15F 0.38 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-DU-6392-01 6 127608039 127608039 T C RNF146 Missense_Mutation p.L94P 0.25 tolerated(0.06) probably_damaging(0.972) TCGA-DU-6392-01 6 127611167 127611167 C T ECHDC1 Silent p.P257P 0.39 TCGA-DU-6392-01 6 127768259 127768259 T C KIAA0408 Missense_Mutation p.H402R 0.43 deleterious(0.02) benign(0.032) TCGA-DU-6392-01 6 127796864 127796864 C T SOGA3 Silent p.P769P 0.61 TCGA-DU-6392-01 6 127834173 127834173 T C SOGA3 Missense_Mutation p.R450G 0.40 deleterious(0) probably_damaging(0.952) TCGA-DU-6392-01 6 128031050 128031050 C T THEMIS 3'UTR 0.43 TCGA-DU-6392-01 6 129571302 129571302 C A LAMA2 Missense_Mutation p.L610I 0.10 tolerated(1) benign(0.014) TCGA-DU-6392-01 6 129601266 129601266 C T LAMA2 Silent p.V837V 0.30 TCGA-DU-6392-01 6 129724975 129724975 T C LAMA2 Silent p.D1912D 0.33 TCGA-DU-6392-01 6 129813206 129813206 C T LAMA2 Missense_Mutation p.L2687F 0.25 deleterious(0.01) probably_damaging(0.977) TCGA-DU-6392-01 6 129835534 129835534 A G LAMA2 Missense_Mutation p.D3002G 0.40 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 6 129959757 129959757 C T ARHGAP18 Missense_Mutation p.E112K 0.19 deleterious(0.01) benign(0.052) TCGA-DU-6392-01 6 130372423 130372423 A C L3MBTL3 Silent p.R107R 0.41 TCGA-DU-6392-01 6 131225615 131225615 C A EPB41L2 Missense_Mutation p.D307Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 1313531 1313531 C T FOXQ1 Missense_Mutation p.P198S 0.39 deleterious(0.05) possibly_damaging(0.753) TCGA-DU-6392-01 6 131490380 131490380 G T AKAP7 Nonsense_Mutation p.G186* 0.12 TCGA-DU-6392-01 6 13185202 13185202 C T PHACTR1 Missense_Mutation p.P165L 0.41 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 6 131904949 131904949 T C ARG1 Silent p.T298T 0.11 TCGA-DU-6392-01 6 131929180 131929180 T G MED23 Missense_Mutation p.D370A 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 6 132211485 132211485 G T ENPP1 Missense_Mutation p.G871V 0.11 deleterious(0.02) probably_damaging(0.968) TCGA-DU-6392-01 6 132270531 132270531 G T CTGF Missense_Mutation p.P308H 0.10 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 6 132618234 132618234 T C MOXD1 3'UTR 0.50 TCGA-DU-6392-01 6 132618927 132618927 G A MOXD1 Missense_Mutation p.S559L 0.40 tolerated(0.06) benign(0.207) TCGA-DU-6392-01 6 132695805 132695805 G T MOXD1 Missense_Mutation p.L126M 0.26 deleterious(0.03) probably_damaging(0.983) TCGA-DU-6392-01 6 13273267 13273267 C T TBC1D7 Intron 0.47 TCGA-DU-6392-01 6 132892264 132892264 G A TAAR6 Missense_Mutation p.M268I 0.35 tolerated(0.13) benign(0.002) TCGA-DU-6392-01 6 132892499 132892499 G T TAAR6 3'Flank 0.09 TCGA-DU-6392-01 6 133044935 133044935 G A VNN3 3'UTR 0.46 TCGA-DU-6392-01 6 133100435 133100435 G T SLC18B1 Missense_Mutation p.P256H 0.28 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 133138166 133138166 G A RPS12 Missense_Mutation p.R101H 0.37 tolerated(0.07) benign(0.011) TCGA-DU-6392-01 6 134210781 134210781 C T TCF21 Silent p.N82N 0.38 TCGA-DU-6392-01 6 134301387 134301387 C T TBPL1 Missense_Mutation p.R42C 0.31 deleterious(0) probably_damaging(0.973) TCGA-DU-6392-01 6 134350230 134350230 C A SLC2A12 Missense_Mutation p.D245Y 0.33 deleterious(0) probably_damaging(0.948) TCGA-DU-6392-01 6 134350472 134350472 C A SLC2A12 Missense_Mutation p.R164I 0.16 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 134491471 134491471 C T SGK1 Missense_Mutation p.V506I 0.47 tolerated(0.19) benign(0.052) TCGA-DU-6392-01 6 134493435 134493435 T C SGK1 Missense_Mutation p.I323V 0.33 tolerated(0.1) benign(0.067) TCGA-DU-6392-01 6 134583151 134583151 G T SGK1 Missense_Mutation p.L69M 0.07 tolerated_low_confidence(0.1) benign(0.097) TCGA-DU-6392-01 6 135250346 135250346 A C ALDH8A1 Missense_Mutation p.I286S 0.41 deleterious(0) probably_damaging(0.948) TCGA-DU-6392-01 6 135515004 135515004 C T MYB Missense_Mutation p.A264V 0.37 tolerated(0.09) possibly_damaging(0.677) TCGA-DU-6392-01 6 135518458 135518458 G A MYB Silent p.S521S 0.44 TCGA-DU-6392-01 6 135732581 135732581 G A AHI1 Missense_Mutation p.P956S 0.33 tolerated(0.1) possibly_damaging(0.718) TCGA-DU-6392-01 6 135788751 135788751 G T AHI1 Missense_Mutation p.L53I 0.24 tolerated(0.3) benign(0) TCGA-DU-6392-01 6 136495026 136495026 C T PDE7B Missense_Mutation p.T268I 0.37 tolerated(0.14) probably_damaging(0.924) TCGA-DU-6392-01 6 13657462 13657462 C T RANBP9 Silent p.S261S 0.38 TCGA-DU-6392-01 6 136582540 136582540 C A BCLAF1 Missense_Mutation p.G874W 0.17 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 6 136698913 136698913 G T MAP7 Missense_Mutation p.A266D 0.57 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 6 136878874 136878874 C T MAP3K5 3'UTR 0.35 TCGA-DU-6392-01 6 137193348 137193348 C A PEX7 Missense_Mutation p.H254N 0.37 tolerated(0.62) benign(0.027) TCGA-DU-6392-01 6 137245552 137245552 G A SLC35D3 Silent p.A323A 0.41 TCGA-DU-6392-01 6 137338236 137338236 G T IL20RA Silent p.P31P 0.39 TCGA-DU-6392-01 6 138576703 138576703 C A KIAA1244 Missense_Mutation p.H301N 0.08 tolerated(0.22) benign(0.06) TCGA-DU-6392-01 6 138584261 138584261 G A KIAA1244 Silent p.T547T 0.20 TCGA-DU-6392-01 6 138599732 138599732 C T KIAA1244 Missense_Mutation p.P758L 0.41 deleterious(0.02) benign(0.158) TCGA-DU-6392-01 6 1390670 1390671 - G FOXF2 Frame_Shift_Ins p.L165Pfs*241 0.34 TCGA-DU-6392-01 6 139164320 139164320 G T ECT2L Nonsense_Mutation p.E183* 0.44 TCGA-DU-6392-01 6 139202188 139202188 T G ECT2L Missense_Mutation p.I587S 0.13 deleterious(0.02) benign(0.124) TCGA-DU-6392-01 6 139222212 139222212 G T ECT2L Missense_Mutation p.V848L 0.08 deleterious(0.02) benign(0.014) TCGA-DU-6392-01 6 139266781 139266781 G A REPS1 Missense_Mutation p.R111C 0.36 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 6 139269016 139269016 T C REPS1 Missense_Mutation p.Y63C 0.38 deleterious(0.01) benign(0.03) TCGA-DU-6392-01 6 139487642 139487642 A G HECA Missense_Mutation p.T165A 0.42 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 6 1394964 1394964 C A FOXF2 Missense_Mutation p.P402Q 0.44 deleterious(0) benign(0.432) TCGA-DU-6392-01 6 139694780 139694780 G A CITED2 Missense_Mutation p.P101L 0.46 deleterious(0.01) benign(0.14) TCGA-DU-6392-01 6 14131769 14131769 G T CD83 Nonsense_Mutation p.E58* 0.08 TCGA-DU-6392-01 6 14135456 14135456 G T CD83 Nonsense_Mutation p.E203* 0.08 TCGA-DU-6392-01 6 142397024 142397024 G T NMBR Missense_Mutation p.L312I 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 142409507 142409507 C T NMBR Missense_Mutation p.V97I 0.23 tolerated(0.06) benign(0.21) TCGA-DU-6392-01 6 143074858 143074858 C T HIVEP2 Missense_Mutation p.A2243T 0.27 tolerated(0.24) benign(0.089) TCGA-DU-6392-01 6 143081036 143081036 G A HIVEP2 Missense_Mutation p.S2130F 0.37 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 6 143081223 143081223 C A HIVEP2 Nonsense_Mutation p.G2068* 0.08 TCGA-DU-6392-01 6 143091681 143091681 C T HIVEP2 Missense_Mutation p.A1399T 0.34 tolerated(0.52) benign(0.001) TCGA-DU-6392-01 6 143094683 143094683 G A HIVEP2 Missense_Mutation p.S398F 0.40 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 6 143095871 143095871 T C HIVEP2 Missense_Mutation p.D2G 0.33 deleterious_low_confidence(0.01) benign(0.312) TCGA-DU-6392-01 6 143654485 143654485 A G AIG1 Silent p.G194G 0.51 TCGA-DU-6392-01 6 143810334 143810334 T G PEX3 Missense_Mutation p.F365V 0.07 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 6 144086745 144086746 - C PHACTR2 Frame_Shift_Ins p.L351Sfs*4 0.38 TCGA-DU-6392-01 6 144093464 144093464 T G PHACTR2 Silent p.S434S 0.10 TCGA-DU-6392-01 6 144416569 144416569 G A SF3B5 Silent p.G22G 0.39 TCGA-DU-6392-01 6 144747452 144747452 G A UTRN Silent p.S145S 0.47 TCGA-DU-6392-01 6 144769783 144769783 G T UTRN Missense_Mutation p.K650N 0.09 tolerated(0.1) benign(0.003) TCGA-DU-6392-01 6 144803408 144803408 T C UTRN Silent p.L1191L 0.38 TCGA-DU-6392-01 6 144844245 144844245 G T UTRN Missense_Mutation p.A1943S 0.30 deleterious(0.04) benign(0.024) TCGA-DU-6392-01 6 144878296 144878296 C A UTRN Missense_Mutation p.L2380M 0.14 deleterious(0.01) possibly_damaging(0.523) TCGA-DU-6392-01 6 144898291 144898291 G A UTRN Missense_Mutation p.R2449H 0.10 tolerated(0.53) benign(0.024) TCGA-DU-6392-01 6 145142120 145142120 G A UTRN Missense_Mutation p.V3154I 0.14 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 6 146127055 146127055 G T FBXO30 Missense_Mutation p.P163T 0.10 tolerated(0.11) benign(0.06) TCGA-DU-6392-01 6 146127372 146127372 C T FBXO30 Missense_Mutation p.R57Q 0.10 tolerated(0.34) possibly_damaging(0.59) TCGA-DU-6392-01 6 146207593 146207593 A C SHPRH 3'UTR 0.29 TCGA-DU-6392-01 6 146266768 146266768 G A SHPRH Missense_Mutation p.R443C 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-6392-01 6 146276488 146276488 A G SHPRH Intron 0.29 TCGA-DU-6392-01 6 146719914 146719914 C T GRM1 Missense_Mutation p.P580L 0.45 tolerated(0.37) benign(0.008) TCGA-DU-6392-01 6 146865220 146865220 C T RAB32 Silent p.S71S 0.18 TCGA-DU-6392-01 6 147124001 147124001 A G ADGB Intron 0.33 TCGA-DU-6392-01 6 147124375 147124375 C T ADGB Intron 0.21 TCGA-DU-6392-01 6 147703945 147703945 G A STXBP5 Silent p.R1075R 0.37 TCGA-DU-6392-01 6 149699899 149699899 T G TAB2 Missense_Mutation p.V283G 0.11 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 6 149718775 149718775 C T TAB2 Missense_Mutation p.L547F 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-DU-6392-01 6 149772540 149772540 G A ZC3H12D Missense_Mutation p.A288V 0.37 deleterious(0) possibly_damaging(0.882) TCGA-DU-6392-01 6 149826712 149826712 A T PPIL4 Missense_Mutation p.H452Q 0.35 tolerated(0.2) benign(0.007) TCGA-DU-6392-01 6 149922851 149922851 G A KATNA1 Missense_Mutation p.T256M 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 150005294 150005294 T C LATS1 Missense_Mutation p.N311D 0.07 tolerated_low_confidence(0.07) benign(0.014) TCGA-DU-6392-01 6 150059820 150059820 A C NUP43 Missense_Mutation p.D199E 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 6 150267536 150267536 T C ULBP2 Silent p.S126S 0.10 TCGA-DU-6392-01 6 150342236 150342236 G A RAET1L Nonsense_Mutation p.Q146* 0.39 TCGA-DU-6392-01 6 150386666 150386666 C A ULBP3 Missense_Mutation p.A166S 0.11 deleterious(0.04) probably_damaging(0.995) TCGA-DU-6392-01 6 150387291 150387291 G A ULBP3 Silent p.H32H 0.42 TCGA-DU-6392-01 6 150390163 150390163 C T ULBP3 Missense_Mutation p.A14T 0.67 tolerated(0.6) benign(0.017) TCGA-DU-6392-01 6 151125863 151125863 G A PLEKHG1 Missense_Mutation p.A300T 0.38 deleterious(0.03) possibly_damaging(0.772) TCGA-DU-6392-01 6 151203944 151203944 G A MTHFD1L Missense_Mutation p.G155D 0.28 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 6 151672950 151672950 G A AKAP12 Missense_Mutation p.E1142K 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-DU-6392-01 6 151694680 151694680 G A ZBTB2 Silent p.G31G 0.40 TCGA-DU-6392-01 6 151766610 151766610 G A RMND1 Silent p.L113L 0.35 TCGA-DU-6392-01 6 151779496 151779496 C A C6orf211 Missense_Mutation p.L61I 0.43 tolerated(0.19) benign(0.021) TCGA-DU-6392-01 6 151785753 151785753 G T C6orf211 Missense_Mutation p.Q186H 0.13 deleterious(0) possibly_damaging(0.789) TCGA-DU-6392-01 6 151939260 151939260 G A CCDC170 Missense_Mutation p.G709D 0.44 tolerated(0.84) benign(0.009) TCGA-DU-6392-01 6 152332875 152332875 G A ESR1 Missense_Mutation p.R394H 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 152462343 152462343 G A SYNE1 Missense_Mutation p.T8414M 0.39 possibly_damaging(0.72) TCGA-DU-6392-01 6 152470620 152470620 G A SYNE1 Missense_Mutation p.R8212C 0.45 possibly_damaging(0.74) TCGA-DU-6392-01 6 152476032 152476032 A T SYNE1 Missense_Mutation p.F8042I 0.07 possibly_damaging(0.728) TCGA-DU-6392-01 6 152553312 152553312 T C SYNE1 Missense_Mutation p.E6934G 0.14 possibly_damaging(0.728) TCGA-DU-6392-01 6 152557334 152557334 T C SYNE1 Silent p.Q6768Q 0.06 TCGA-DU-6392-01 6 152560749 152560749 G T SYNE1 Missense_Mutation p.F6662L 0.44 benign(0.001) TCGA-DU-6392-01 6 152589210 152589210 C A SYNE1 Nonsense_Mutation p.E6266* 0.50 TCGA-DU-6392-01 6 152646334 152646334 A G SYNE1 Missense_Mutation p.L5181P 0.07 possibly_damaging(0.502) TCGA-DU-6392-01 6 152647664 152647664 G A SYNE1 Silent p.G5020G 0.12 TCGA-DU-6392-01 6 152674457 152674457 C T SYNE1 Missense_Mutation p.A3732T 0.08 benign(0.01) TCGA-DU-6392-01 6 152702469 152702469 G A SYNE1 Missense_Mutation p.A2894V 0.07 benign(0.009) TCGA-DU-6392-01 6 152712526 152712526 C A SYNE1 Missense_Mutation p.E2630D 0.47 possibly_damaging(0.733) TCGA-DU-6392-01 6 152718083 152718083 G A SYNE1 Silent p.S2461S 0.31 TCGA-DU-6392-01 6 152722419 152722419 C T SYNE1 Missense_Mutation p.A2295T 0.34 benign(0.118) TCGA-DU-6392-01 6 152728208 152728208 C A SYNE1 Nonsense_Mutation p.E2222* 0.08 TCGA-DU-6392-01 6 152737985 152737985 G A SYNE1 Missense_Mutation p.R1863W 0.10 probably_damaging(0.999) TCGA-DU-6392-01 6 152771814 152771814 C T SYNE1 Missense_Mutation p.S1114N 0.42 benign(0.002) TCGA-DU-6392-01 6 152771912 152771912 G A SYNE1 Silent p.I1081I 0.10 TCGA-DU-6392-01 6 152782732 152782732 C A SYNE1 Missense_Mutation p.K798N 0.11 probably_damaging(0.998) TCGA-DU-6392-01 6 152792774 152792774 G A SYNE1 Silent p.Y530Y 0.34 TCGA-DU-6392-01 6 153292398 153292398 G T FBXO5 Missense_Mutation p.T415N 0.34 tolerated(0.32) benign(0.001) TCGA-DU-6392-01 6 154439843 154439843 C A OPRM1 Missense_Mutation p.A490D 0.41 deleterious_low_confidence(0.01) benign(0.058) TCGA-DU-6392-01 6 154489055 154489055 C A IPCEF1 Missense_Mutation p.K368N 0.32 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 6 15487706 15487706 C T JARID2 Missense_Mutation p.A280V 0.41 deleterious_low_confidence(0.01) benign(0.031) TCGA-DU-6392-01 6 155154476 155154476 G A SCAF8 Missense_Mutation p.A1255T 0.33 tolerated_low_confidence(0.25) benign(0.376) TCGA-DU-6392-01 6 15524688 15524688 G A DTNBP1 Intron 0.33 TCGA-DU-6392-01 6 155451107 155451107 C T TIAM2 Silent p.Y250Y 0.27 TCGA-DU-6392-01 6 155451209 155451209 C T TIAM2 Silent p.G284G 0.11 TCGA-DU-6392-01 6 155458711 155458711 G A TIAM2 Missense_Mutation p.R532Q 0.30 deleterious(0) possibly_damaging(0.849) TCGA-DU-6392-01 6 155532416 155532416 G T TIAM2 Missense_Mutation p.R1048M 0.15 deleterious(0.04) benign(0.227) TCGA-DU-6392-01 6 155578923 155578923 C T TFB1M 3'UTR 0.08 TCGA-DU-6392-01 6 155732473 155732473 G A NOX3 Missense_Mutation p.R444W 0.40 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 155761125 155761125 G A NOX3 Silent p.I211I 0.39 TCGA-DU-6392-01 6 15615599 15615599 C A DTNBP1 Missense_Mutation p.E129D 0.42 deleterious(0.04) probably_damaging(0.996) TCGA-DU-6392-01 6 157256605 157256605 G A ARID1B Missense_Mutation p.M644I 0.19 benign(0.099) TCGA-DU-6392-01 6 157502125 157502125 C T ARID1B Missense_Mutation p.T1053I 0.29 probably_damaging(0.997) TCGA-DU-6392-01 6 157502224 157502224 C T ARID1B Missense_Mutation p.P1086L 0.34 probably_damaging(0.999) TCGA-DU-6392-01 6 157505375 157505375 A G ARID1B Missense_Mutation p.N1119S 0.47 probably_damaging(0.937) TCGA-DU-6392-01 6 157528784 157528784 C T ARID1B Missense_Mutation p.A2170V 0.47 probably_damaging(0.994) TCGA-DU-6392-01 6 157713970 157713970 G A TMEM242 Missense_Mutation p.S130L 0.38 deleterious(0.03) benign(0.042) TCGA-DU-6392-01 6 158323018 158323018 C T SNX9 Silent p.G187G 0.32 TCGA-DU-6392-01 6 158330965 158330965 G T SNX9 Missense_Mutation p.R286M 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 158349675 158349675 A G SNX9 Missense_Mutation p.D410G 0.21 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 158449920 158449920 G A SYNJ2 Missense_Mutation p.R116H 0.46 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 6 158454662 158454662 C T SYNJ2 Missense_Mutation p.R221C 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 158464356 158464356 C T SYNJ2 Silent p.Y240Y 0.12 TCGA-DU-6392-01 6 158490681 158490681 G A SYNJ2 Missense_Mutation p.R639H 0.47 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 6 158514936 158514936 G A SYNJ2 Intron 0.37 TCGA-DU-6392-01 6 158515044 158515044 C A SYNJ2 Intron 0.40 TCGA-DU-6392-01 6 158516690 158516690 A G SYNJ2 Missense_Mutation p.H1262R 0.44 tolerated_low_confidence(0.56) benign(0.003) TCGA-DU-6392-01 6 158516907 158516907 G A SYNJ2 Silent p.P1334P 0.41 TCGA-DU-6392-01 6 158569913 158569913 C T SERAC1 Silent p.L113L 0.22 TCGA-DU-6392-01 6 158735283 158735283 C T TULP4 Missense_Mutation p.R79W 0.42 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 6 158850911 158850911 G A TULP4 Nonsense_Mutation p.W175* 0.12 TCGA-DU-6392-01 6 158923090 158923090 C T TULP4 Nonsense_Mutation p.Q799* 0.12 TCGA-DU-6392-01 6 158923412 158923412 G A TULP4 Missense_Mutation p.R906Q 0.44 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DU-6392-01 6 159010761 159010761 G T TMEM181 Missense_Mutation p.V284L 0.11 tolerated(0.22) benign(0.097) TCGA-DU-6392-01 6 159058914 159058914 C T DYNLT1 Missense_Mutation p.A28T 0.34 tolerated(0.59) benign(0.004) TCGA-DU-6392-01 6 159084380 159084380 C T SYTL3 Missense_Mutation p.A27V 0.43 tolerated(0.56) benign(0.002) TCGA-DU-6392-01 6 159187958 159187958 G A EZR Silent p.F583F 0.42 TCGA-DU-6392-01 6 159190393 159190393 G A EZR Missense_Mutation p.R437C 0.12 deleterious(0.03) benign(0.009) TCGA-DU-6392-01 6 159190828 159190828 G A EZR Silent p.S413S 0.27 TCGA-DU-6392-01 6 159687220 159687220 G A FNDC1 Missense_Mutation p.G1797R 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 160113695 160113695 T G SOD2 Missense_Mutation p.K75T 0.14 deleterious(0.04) benign(0.059) TCGA-DU-6392-01 6 160176190 160176190 C A WTAP Silent p.A246A 0.14 TCGA-DU-6392-01 6 160176228 160176228 C A WTAP Missense_Mutation p.P259H 0.56 tolerated(0.1) possibly_damaging(0.621) TCGA-DU-6392-01 6 160237602 160237602 C T PNLDC1 Missense_Mutation p.A352V 0.37 deleterious(0) possibly_damaging(0.888) TCGA-DU-6392-01 6 160453618 160453618 C T IGF2R Silent p.C306C 0.40 TCGA-DU-6392-01 6 160468835 160468835 C T IGF2R Silent p.N747N 0.35 TCGA-DU-6392-01 6 160483581 160483581 G T IGF2R Missense_Mutation p.Q1200H 0.24 deleterious(0.01) probably_damaging(0.977) TCGA-DU-6392-01 6 160485509 160485509 G T IGF2R Missense_Mutation p.K1321N 0.11 tolerated(0.15) benign(0.009) TCGA-DU-6392-01 6 160496974 160496974 G A IGF2R Silent p.K1754K 0.11 TCGA-DU-6392-01 6 160543249 160543249 C T SLC22A1 Silent p.D94D 0.41 TCGA-DU-6392-01 6 160579632 160579632 G A SLC22A1 3'UTR 0.38 TCGA-DU-6392-01 6 160864714 160864714 G A SLC22A3 Missense_Mutation p.A484T 0.32 tolerated(0.96) probably_damaging(1) TCGA-DU-6392-01 6 160999636 160999636 G A LPA Nonsense_Mutation p.R1464* 0.11 TCGA-DU-6392-01 6 161010738 161010738 G A LPA Missense_Mutation p.T1265M 0.51 tolerated(0.23) benign(0.255) TCGA-DU-6392-01 6 161015120 161015120 C A LPA Missense_Mutation p.D1167Y 0.09 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 6 161027655 161027655 G T LPA Missense_Mutation p.P880H 0.43 tolerated(0.13) probably_damaging(0.911) TCGA-DU-6392-01 6 1610942 1610942 A G FOXC1 Missense_Mutation p.T88A 0.27 tolerated(0.34) benign(0.335) TCGA-DU-6392-01 6 161137785 161137785 C A PLG Silent p.I259I 0.28 TCGA-DU-6392-01 6 161160111 161160111 C A PLG Missense_Mutation p.P630H 0.11 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 6 161173248 161173248 G A PLG Missense_Mutation p.E743K 0.27 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 6 16145221 16145221 T C MYLIP Silent p.L307L 0.42 TCGA-DU-6392-01 6 161469299 161469299 C A MAP3K4 Intron 0.20 TCGA-DU-6392-01 6 161508878 161508878 G A MAP3K4 Silent p.K905K 0.07 TCGA-DU-6392-01 6 161508949 161508949 C A MAP3K4 Missense_Mutation p.P929H 0.23 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 16306647 16306647 G A ATXN1 Silent p.D787D 0.38 TCGA-DU-6392-01 6 163510401 163510401 C T PACRG Nonsense_Mutation p.Q192* 0.44 TCGA-DU-6392-01 6 165693543 165693543 G T C6orf118 3'UTR 0.33 TCGA-DU-6392-01 6 165749631 165749631 G A PDE10A Missense_Mutation p.P750S 0.42 deleterious(0.01) probably_damaging(0.965) TCGA-DU-6392-01 6 166831722 166831722 G A RPS6KA2 Silent p.D651D 0.09 TCGA-DU-6392-01 6 166836766 166836766 G A RPS6KA2 Missense_Mutation p.T582M 0.31 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 6 167271707 167271707 G A RP11-514O12.4 Missense_Mutation p.T159I 0.09 tolerated_low_confidence(0.58) benign(0.001) TCGA-DU-6392-01 6 167549745 167549745 C T CCR6 Silent p.S9S 0.36 TCGA-DU-6392-01 6 167549772 167549772 T G CCR6 Nonsense_Mutation p.Y18* 0.38 TCGA-DU-6392-01 6 167708048 167708048 G T UNC93A Missense_Mutation p.S44I 0.48 deleterious(0.03) probably_damaging(0.995) TCGA-DU-6392-01 6 167721318 167721318 G A UNC93A Missense_Mutation p.R343H 0.31 tolerated(1) benign(0.001) TCGA-DU-6392-01 6 168276093 168276093 G T MLLT4 Missense_Mutation p.E219D 0.08 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 6 168352039 168352039 G A MLLT4 Silent p.S1328S 0.07 TCGA-DU-6392-01 6 168352062 168352062 C T MLLT4 Missense_Mutation p.T1336I 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.713) TCGA-DU-6392-01 6 168445637 168445637 G A KIF25 Silent p.P372P 0.38 TCGA-DU-6392-01 6 169622519 169622519 C T THBS2 Missense_Mutation p.V1016I 0.37 tolerated(0.37) probably_damaging(0.927) TCGA-DU-6392-01 6 169637723 169637723 G A THBS2 Missense_Mutation p.R433C 0.09 deleterious(0) probably_damaging(0.931) TCGA-DU-6392-01 6 169641932 169641932 C T THBS2 Silent p.E272E 0.50 TCGA-DU-6392-01 6 170033068 170033068 G A WDR27 Missense_Mutation p.P733L 0.33 deleterious(0.02) possibly_damaging(0.477) TCGA-DU-6392-01 6 170064353 170064353 G A WDR27 Silent p.H271H 0.29 TCGA-DU-6392-01 6 170159127 170159127 C T ERMARD Missense_Mutation p.H191Y 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 170626873 170626873 T A FAM120B Missense_Mutation p.F132Y 0.33 deleterious(0) probably_damaging(0.966) TCGA-DU-6392-01 6 170889156 170889156 T C PDCD2 Silent p.K232K 0.12 TCGA-DU-6392-01 6 17601185 17601185 C T FAM8A1 Missense_Mutation p.A182V 0.53 tolerated(0.16) benign(0.021) TCGA-DU-6392-01 6 17688630 17688630 C T NUP153 Missense_Mutation p.E111K 0.41 deleterious(0.01) benign(0.423) TCGA-DU-6392-01 6 17706523 17706523 C T NUP153 Silent p.G32G 0.26 TCGA-DU-6392-01 6 17761058 17761058 C T KIF13A 3'Flank 0.44 TCGA-DU-6392-01 6 17771432 17771432 C T KIF13A Silent p.Q1498Q 0.38 TCGA-DU-6392-01 6 17788044 17788044 G A KIF13A Silent p.Y1108Y 0.43 TCGA-DU-6392-01 6 17794856 17794856 C T KIF13A Missense_Mutation p.E1008K 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 17826109 17826109 G A KIF13A Missense_Mutation p.T559M 0.33 tolerated(0.05) benign(0.007) TCGA-DU-6392-01 6 17850612 17850612 C T KIF13A Missense_Mutation p.R220H 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 18215283 18215283 G A KDM1B Missense_Mutation p.A487T 0.33 tolerated(0.54) unknown(0) TCGA-DU-6392-01 6 18459946 18459946 G T RNF144B Missense_Mutation p.K215N 0.10 deleterious(0.05) possibly_damaging(0.841) TCGA-DU-6392-01 6 18572065 18572065 A G MIR548A1 RNA 0.43 TCGA-DU-6392-01 6 20487011 20487011 C A E2F3 Missense_Mutation p.L326I 0.29 deleterious(0) benign(0.158) TCGA-DU-6392-01 6 21595157 21595157 G T SOX4 Missense_Mutation p.R131M 0.24 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 6 22294743 22294743 G A PRL Silent p.P33P 0.50 TCGA-DU-6392-01 6 22569978 22569978 G A HDGFL1 Silent p.P58P 0.55 TCGA-DU-6392-01 6 24134670 24134670 G A NRSN1 Missense_Mutation p.A39T 0.13 tolerated(0.2) benign(0.009) TCGA-DU-6392-01 6 24515450 24515450 G A ALDH5A1 Missense_Mutation p.R274Q 0.39 tolerated(0.2) benign(0.022) TCGA-DU-6392-01 6 24714603 24714603 G A C6orf62 Silent p.I124I 0.42 TCGA-DU-6392-01 6 24784318 24784318 A T GMNN Missense_Mutation p.N93I 0.32 deleterious(0.04) possibly_damaging(0.829) TCGA-DU-6392-01 6 25280063 25280063 G T LRRC16A Nonsense_Mutation p.E14* 0.08 TCGA-DU-6392-01 6 25471461 25471461 T C LRRC16A Missense_Mutation p.V252A 0.36 deleterious(0.04) possibly_damaging(0.867) TCGA-DU-6392-01 6 25551155 25551155 G T LRRC16A Missense_Mutation p.M782I 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 6 25727362 25727362 G T HIST1H2BA Missense_Mutation p.A76S 0.36 deleterious_low_confidence(0.03) benign(0.091) TCGA-DU-6392-01 6 25777163 25777163 T C SLC17A4 Missense_Mutation p.V415A 0.43 deleterious(0) possibly_damaging(0.676) TCGA-DU-6392-01 6 25913438 25913438 G A SLC17A2 3'UTR 0.39 TCGA-DU-6392-01 6 25983700 25983700 G T TRIM38 Missense_Mutation p.A395S 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-DU-6392-01 6 26021045 26021045 C A HIST1H3A Missense_Mutation p.L110M 0.08 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-DU-6392-01 6 26022223 26022223 G A HIST1H4A 3'UTR 0.49 TCGA-DU-6392-01 6 26033407 26033407 C G HIST1H2AB Missense_Mutation p.K130N 0.30 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-DU-6392-01 6 26091280 26091280 C T HFE Silent p.H96H 0.10 TCGA-DU-6392-01 6 26091284 26091284 T C HFE Missense_Mutation p.F98L 0.32 tolerated(0.26) probably_damaging(0.999) TCGA-DU-6392-01 6 26156764 26156764 C T HIST1H1E Missense_Mutation p.A49V 0.17 tolerated(0.06) benign(0.374) TCGA-DU-6392-01 6 26217181 26217181 C A HIST1H2AE 5'UTR 0.12 TCGA-DU-6392-01 6 26385353 26385353 C T BTN2A2 Missense_Mutation p.R69W 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 6 26392884 26392884 G A BTN2A2 Missense_Mutation p.E421K 0.29 deleterious(0.02) possibly_damaging(0.79) TCGA-DU-6392-01 6 26451903 26451903 C T BTN3A3 Missense_Mutation p.A340V 0.42 tolerated(0.79) benign(0.035) TCGA-DU-6392-01 6 26463635 26463635 C T BTN2A1 Silent p.D198D 0.44 TCGA-DU-6392-01 6 26465472 26465472 C A BTN2A1 Missense_Mutation p.L258M 0.32 deleterious(0.03) benign(0.196) TCGA-DU-6392-01 6 26469105 26469105 G A BTN2A1 3'UTR 0.22 TCGA-DU-6392-01 6 26545373 26545373 C T HMGN4 5'UTR 0.39 TCGA-DU-6392-01 6 27100169 27100169 T C HIST1H2BJ Missense_Mutation p.K121E 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.472) TCGA-DU-6392-01 6 27799096 27799096 G A HIST1H4K Silent p.A70A 0.44 TCGA-DU-6392-01 6 27839709 27839709 G A HIST1H3I Missense_Mutation p.R129C 0.41 tolerated_low_confidence(0.06) possibly_damaging(0.836) TCGA-DU-6392-01 6 27880070 27880070 G A OR2B2 Nonsense_Mutation p.Q10* 0.44 TCGA-DU-6392-01 6 28053407 28053407 A G ZNF165 Missense_Mutation p.Q50R 0.36 tolerated(0.08) benign(0.007) TCGA-DU-6392-01 6 28093347 28093347 A G ZSCAN16 Silent p.Q42Q 0.05 TCGA-DU-6392-01 6 28195029 28195029 G A ZSCAN9 Missense_Mutation p.R56Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 6 28268753 28268753 G A PGBD1 Silent p.Q374Q 0.37 TCGA-DU-6392-01 6 28269043 28269043 G T PGBD1 Missense_Mutation p.R471M 0.08 deleterious(0.03) possibly_damaging(0.823) TCGA-DU-6392-01 6 28269621 28269621 G A PGBD1 Missense_Mutation p.E664K 0.42 tolerated(0.56) probably_damaging(0.996) TCGA-DU-6392-01 6 28297126 28297126 G A ZSCAN31 Missense_Mutation p.A112V 0.12 tolerated(0.08) benign(0.391) TCGA-DU-6392-01 6 2836162 2836162 G A SERPINB1 Silent p.Y221Y 0.21 TCGA-DU-6392-01 6 2840777 2840777 A G SERPINB1 Missense_Mutation p.L15P 0.24 deleterious(0) possibly_damaging(0.73) TCGA-DU-6392-01 6 2890440 2890440 C A SERPINB9 Missense_Mutation p.R363I 0.11 deleterious(0.02) benign(0.285) TCGA-DU-6392-01 6 28964268 28964268 G T ZNF311 Missense_Mutation p.L171I 0.25 tolerated(0.42) benign(0.045) TCGA-DU-6392-01 6 29365287 29365287 C T OR12D2 Missense_Mutation p.R271W 0.08 deleterious(0.04) benign(0.052) TCGA-DU-6392-01 6 29394836 29394836 C T OR11A1 Missense_Mutation p.V195M 0.11 tolerated(0.14) benign(0.044) TCGA-DU-6392-01 6 29523970 29523970 C T UBD Missense_Mutation p.S62N 0.43 tolerated(0.05) benign(0.068) TCGA-DU-6392-01 6 29577076 29577076 C T GABBR1 Missense_Mutation p.V597I 0.30 deleterious(0.01) benign(0.406) TCGA-DU-6392-01 6 29589570 29589570 C T GABBR1 Missense_Mutation p.G364R 0.29 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 6 29591181 29591181 T C GABBR1 Silent p.P288P 0.30 TCGA-DU-6392-01 6 29691169 29691169 G A HLA-F 5'Flank 0.45 TCGA-DU-6392-01 6 29912306 29912306 G A HLA-A Missense_Mutation p.V309M 0.09 tolerated_low_confidence(0.3) probably_damaging(0.998) TCGA-DU-6392-01 6 30114957 30114957 G A TRIM40 Missense_Mutation p.A184T 0.08 tolerated(0.11) benign(0.109) TCGA-DU-6392-01 6 30122144 30122144 G A TRIM10 Missense_Mutation p.R350W 0.24 tolerated(0.19) benign(0.212) TCGA-DU-6392-01 6 3019874 3019874 G A NQO2 Nonsense_Mutation p.W227* 0.38 TCGA-DU-6392-01 6 30313002 30313002 C A RPP21 Nonsense_Mutation p.Y18* 0.50 TCGA-DU-6392-01 6 30459017 30459017 G A HLA-E Nonsense_Mutation p.W238* 0.36 TCGA-DU-6392-01 6 30553102 30553102 C A ABCF1 Missense_Mutation p.A486D 0.14 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 30570286 30570286 C T PPP1R10 Missense_Mutation p.E714K 0.26 tolerated_low_confidence(0.06) unknown(0) TCGA-DU-6392-01 6 30617356 30617356 C A C6orf136 Missense_Mutation p.L213I 0.07 deleterious_low_confidence(0.01) benign(0.163) TCGA-DU-6392-01 6 30620664 30620664 C A C6orf136 Missense_Mutation p.P488H 0.23 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 6 30623075 30623075 C A DHX16 Missense_Mutation p.E900D 0.31 tolerated(0.1) unknown(0) TCGA-DU-6392-01 6 30656463 30656463 C T NRM Missense_Mutation p.R255Q 0.35 tolerated(0.15) benign(0.018) TCGA-DU-6392-01 6 30671864 30671864 T G MDC1 Missense_Mutation p.E1699A 0.07 deleterious(0.05) probably_damaging(0.987) TCGA-DU-6392-01 6 30671921 30671921 T C MDC1 Missense_Mutation p.Q1680R 0.40 tolerated(0.18) benign(0.032) TCGA-DU-6392-01 6 30672521 30672521 C A MDC1 Missense_Mutation p.R1480I 0.08 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 6 30679881 30679881 G A MDC1 Missense_Mutation p.A613V 0.17 tolerated(0.1) probably_damaging(0.968) TCGA-DU-6392-01 6 30680174 30680174 G T MDC1 Silent p.A515A 0.42 TCGA-DU-6392-01 6 30680666 30680666 C A MDC1 Missense_Mutation p.K351N 0.38 deleterious(0.03) benign(0.026) TCGA-DU-6392-01 6 30690417 30690417 C T TUBB Missense_Mutation p.A54V 0.53 tolerated_low_confidence(0.06) benign(0.018) TCGA-DU-6392-01 6 30691217 30691217 C T TUBB Silent p.S126S 0.36 TCGA-DU-6392-01 6 30711721 30711721 C T IER3 Missense_Mutation p.A155T 0.29 deleterious(0.01) probably_damaging(0.914) TCGA-DU-6392-01 6 30860315 30860315 C T DDR1 Silent p.I365I 0.40 TCGA-DU-6392-01 6 30889947 30889947 C A VARS2 Missense_Mutation p.L651I 0.11 tolerated(1) possibly_damaging(0.822) TCGA-DU-6392-01 6 30954212 30954212 T G MUC21 Missense_Mutation p.I87S 0.28 tolerated_low_confidence(0.27) unknown(0) TCGA-DU-6392-01 6 31106200 31106200 C T PSORS1C1 Intron 0.32 TCGA-DU-6392-01 6 3111146 3111146 G A RIPK1 Silent p.T562T 0.36 TCGA-DU-6392-01 6 31129330 31129330 G A TCF19 Silent p.S115S 0.10 TCGA-DU-6392-01 6 31323155 31323155 C T HLA-B Silent p.E278E 0.12 TCGA-DU-6392-01 6 31378368 31378368 C A MICA Missense_Mutation p.S40Y 0.42 tolerated(0.09) probably_damaging(0.991) TCGA-DU-6392-01 6 31431688 31431688 C A HCP5 RNA 0.44 TCGA-DU-6392-01 6 31477702 31477702 G A MICB 3'UTR 0.50 TCGA-DU-6392-01 6 31496768 31496768 C T MCCD1 5'UTR 0.32 TCGA-DU-6392-01 6 31556550 31556550 C A LST1 3'UTR 0.24 TCGA-DU-6392-01 6 31593584 31593584 C T PRRC2A Missense_Mutation p.L259F 0.29 unknown(0) TCGA-DU-6392-01 6 31594839 31594839 C T PRRC2A Missense_Mutation p.P385L 0.47 unknown(0) TCGA-DU-6392-01 6 31595899 31595899 G A PRRC2A Missense_Mutation p.A550T 0.51 unknown(0) TCGA-DU-6392-01 6 31596972 31596972 C T PRRC2A Missense_Mutation p.P606L 0.12 possibly_damaging(0.713) TCGA-DU-6392-01 6 31598561 31598561 G T PRRC2A Missense_Mutation p.E816D 0.12 benign(0.217) TCGA-DU-6392-01 6 31598957 31598957 C T PRRC2A Missense_Mutation p.A836V 0.34 possibly_damaging(0.483) TCGA-DU-6392-01 6 31600228 31600228 C T PRRC2A Silent p.L1260L 0.09 TCGA-DU-6392-01 6 31603042 31603042 G A PRRC2A Missense_Mutation p.S1765N 0.38 unknown(0) TCGA-DU-6392-01 6 31605083 31605083 C T PRRC2A Silent p.R2105R 0.15 TCGA-DU-6392-01 6 31611887 31611887 G T BAG6 Missense_Mutation p.P517H 0.33 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 6 31646976 31646976 C T LY6G5C Missense_Mutation p.R64Q 0.36 tolerated(0.19) possibly_damaging(0.724) TCGA-DU-6392-01 6 31675698 31675698 C A LY6G6F Missense_Mutation p.L145M 0.11 deleterious(0.04) benign(0.055) TCGA-DU-6392-01 6 31689450 31689450 C T LY6G6C Missense_Mutation p.A3T 0.32 tolerated_low_confidence(0.15) benign(0.075) TCGA-DU-6392-01 6 31696257 31696257 C A DDAH2 Nonsense_Mutation p.G148* 0.13 TCGA-DU-6392-01 6 31734049 31734049 C T VWA7 Missense_Mutation p.S766N 0.33 tolerated(0.2) benign(0.009) TCGA-DU-6392-01 6 31734933 31734933 A G VWA7 Splice_Site p.X628_splice 0.21 TCGA-DU-6392-01 6 31741095 31741095 C T VWA7 Missense_Mutation p.A281T 0.43 deleterious(0) possibly_damaging(0.86) TCGA-DU-6392-01 6 31742304 31742304 G A VWA7 Missense_Mutation p.P237L 0.19 tolerated(0.06) benign(0.03) TCGA-DU-6392-01 6 31743783 31743783 G A VWA7 Silent p.T157T 0.44 TCGA-DU-6392-01 6 31745339 31745339 G A VARS 3'UTR 0.52 TCGA-DU-6392-01 6 31750347 31750347 G A VARS Missense_Mutation p.R651C 0.39 tolerated(0.15) benign(0.117) TCGA-DU-6392-01 6 31752244 31752244 G T VARS Silent p.L501L 0.08 TCGA-DU-6392-01 6 31760029 31760029 G A VARS Missense_Mutation p.T279I 0.39 tolerated(0.18) possibly_damaging(0.644) TCGA-DU-6392-01 6 31778007 31778007 C T HSPA1L Silent p.S581S 0.40 TCGA-DU-6392-01 6 31778626 31778626 G T HSPA1L Missense_Mutation p.A375D 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-6392-01 6 31779560 31779560 T G HSPA1L Missense_Mutation p.N64H 0.44 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-DU-6392-01 6 31795662 31795662 C T HSPA1B 5'UTR 0.61 TCGA-DU-6392-01 6 31832637 31832637 C T SLC44A4 Missense_Mutation p.D628N 0.31 tolerated(0.19) benign(0.005) TCGA-DU-6392-01 6 31847790 31847790 G A EHMT2 3'UTR 0.42 TCGA-DU-6392-01 6 31860293 31860293 G A EHMT2 Missense_Mutation p.T252M 0.32 tolerated_low_confidence(0.1) benign(0.058) TCGA-DU-6392-01 6 31922131 31922131 A G NELFE Silent p.R277R 0.33 TCGA-DU-6392-01 6 31937356 31937356 G A SKIV2L Missense_Mutation p.R1202H 0.32 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 31938696 31938696 C T DXO Missense_Mutation p.M195I 0.08 tolerated(0.2) benign(0.119) TCGA-DU-6392-01 6 31938848 31938848 G A DXO Missense_Mutation p.R145W 0.33 deleterious(0.02) benign(0.404) TCGA-DU-6392-01 6 31938862 31938862 G A DXO Missense_Mutation p.T140M 0.31 deleterious(0.04) possibly_damaging(0.825) TCGA-DU-6392-01 6 31940211 31940211 T C STK19 Missense_Mutation p.L118P 0.38 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 6 31940512 31940512 G T STK19 Missense_Mutation p.R182M 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 31964364 31964364 C T C4A Silent p.A1221A 0.23 TCGA-DU-6392-01 6 31996282 31996282 C T C4B Missense_Mutation p.A1068V 0.27 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 6 31997102 31997102 C T C4B Silent p.A1221A 0.37 TCGA-DU-6392-01 6 32016145 32016145 C A TNXB 5'Flank 0.20 TCGA-DU-6392-01 6 32035474 32035474 G A TNXB Missense_Mutation p.R2170W 0.40 possibly_damaging(0.736) TCGA-DU-6392-01 6 32040067 32040067 G T TNXB Missense_Mutation p.P1564T 0.19 possibly_damaging(0.566) TCGA-DU-6392-01 6 32063391 32063391 C A TNXB Nonsense_Mutation p.E747* 0.29 TCGA-DU-6392-01 6 32097545 32097545 G A FKBPL Missense_Mutation p.P5S 0.41 tolerated_low_confidence(0.08) benign(0.008) TCGA-DU-6392-01 6 32125413 32125413 G T PPT2 Splice_Site p.X187_splice 0.13 TCGA-DU-6392-01 6 32130594 32130594 G A PPT2 Missense_Mutation p.R265Q 0.46 tolerated(0.33) benign(0.037) TCGA-DU-6392-01 6 32163319 32163319 A T NOTCH4 Silent p.P1969P 0.10 TCGA-DU-6392-01 6 32169988 32169988 A G NOTCH4 Missense_Mutation p.V1207A 0.32 tolerated(0.09) benign(0.242) TCGA-DU-6392-01 6 32170036 32170036 C T NOTCH4 Missense_Mutation p.C1191Y 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 6 32180367 32180367 C T NOTCH4 Missense_Mutation p.R855H 0.30 tolerated(0.32) benign(0) TCGA-DU-6392-01 6 32261804 32261804 T C C6orf10 Missense_Mutation p.T216A 0.08 tolerated(0.06) benign(0.244) TCGA-DU-6392-01 6 32410377 32410377 T A HLA-DRA Missense_Mutation p.F79I 0.34 deleterious(0.01) benign(0.345) TCGA-DU-6392-01 6 32725607 32725607 C T HLA-DQB2 Intron 0.32 TCGA-DU-6392-01 6 32805576 32805576 G T TAP2 Silent p.S145S 0.43 TCGA-DU-6392-01 6 32810845 32810845 G T PSMB8 Missense_Mutation p.L57M 0.16 tolerated(0.23) benign(0.066) TCGA-DU-6392-01 6 32847441 32847441 C T PPP1R2P1 RNA 0.43 TCGA-DU-6392-01 6 32906533 32906533 G A HLA-DMB Missense_Mutation p.R89C 0.41 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 6 32917135 32917135 G T HLA-DMA Missense_Mutation p.L232M 0.57 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 32945321 32945321 G A BRD2 Missense_Mutation p.V435I 0.39 tolerated(0.09) probably_damaging(0.993) TCGA-DU-6392-01 6 32947864 32947864 C T BRD2 Missense_Mutation p.R736C 0.34 deleterious(0) possibly_damaging(0.689) TCGA-DU-6392-01 6 33054010 33054010 G A HLA-DPB1 Missense_Mutation p.A258T 0.15 deleterious_low_confidence(0.04) benign(0.069) TCGA-DU-6392-01 6 33146457 33146457 C A COL11A2 Missense_Mutation p.R487M 0.06 probably_damaging(0.923) TCGA-DU-6392-01 6 33153518 33153518 T C COL11A2 Intron 0.15 TCGA-DU-6392-01 6 33157138 33157138 C T COL11A2 Missense_Mutation p.R64Q 0.31 probably_damaging(0.973) TCGA-DU-6392-01 6 33169641 33169641 C A SLC39A7 Silent p.S177S 0.06 TCGA-DU-6392-01 6 33171570 33171570 C A SLC39A7 Missense_Mutation p.L464M 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-DU-6392-01 6 33219411 33219411 G A VPS52 Missense_Mutation p.R637W 0.32 deleterious(0) possibly_damaging(0.822) TCGA-DU-6392-01 6 33236905 33236905 C T VPS52 Missense_Mutation p.R145Q 0.42 tolerated(1) benign(0.004) TCGA-DU-6392-01 6 33244215 33244215 G A RPS18 Missense_Mutation p.R144H 0.18 tolerated(0.1) unknown(0) TCGA-DU-6392-01 6 33257675 33257675 G T PFDN6 Missense_Mutation p.E14D 0.41 tolerated(0.5) benign(0.035) TCGA-DU-6392-01 6 33259951 33259951 C T RGL2 Silent p.P754P 0.60 TCGA-DU-6392-01 6 33261844 33261844 C A RGL2 Splice_Site p.X452_splice 0.06 TCGA-DU-6392-01 6 33286883 33286883 C A DAXX Missense_Mutation p.R685M 0.12 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 6 33288606 33288606 C T DAXX Missense_Mutation p.A316T 0.40 deleterious(0) probably_damaging(0.942) TCGA-DU-6392-01 6 33371558 33371558 C A KIFC1 Silent p.A136A 0.39 TCGA-DU-6392-01 6 33405668 33405668 G A SYNGAP1 Missense_Mutation p.R329H 0.43 deleterious(0.01) possibly_damaging(0.836) TCGA-DU-6392-01 6 335150 335150 C T DUSP22 Missense_Mutation p.P59S 0.12 tolerated(0.42) benign(0.035) TCGA-DU-6392-01 6 33632961 33632961 C T ITPR3 Silent p.N460N 0.31 TCGA-DU-6392-01 6 33635017 33635017 C A ITPR3 Missense_Mutation p.L555M 0.35 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 6 33653203 33653203 G A ITPR3 Missense_Mutation p.R1792H 0.29 deleterious(0.04) benign(0.055) TCGA-DU-6392-01 6 33655082 33655082 A G ITPR3 Missense_Mutation p.N2052S 0.32 tolerated(0.08) benign(0.083) TCGA-DU-6392-01 6 33657132 33657132 G A ITPR3 Missense_Mutation p.R2271H 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-DU-6392-01 6 33663346 33663346 C T SBP1 Silent p.G43G 0.38 TCGA-DU-6392-01 6 33669180 33669180 G T UQCC2 Silent p.A52A 0.13 TCGA-DU-6392-01 6 33693227 33693227 G A IP6K3 Silent p.C252C 0.38 TCGA-DU-6392-01 6 33740543 33740543 C A LEMD2 Missense_Mutation p.K458N 0.30 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 6 3410478 3410478 A C SLC22A23 Missense_Mutation p.L286R 0.11 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 34214829 34214829 C T C6orf1 Silent p.E39E 0.40 TCGA-DU-6392-01 6 34802047 34802047 C A UHRF1BP1 Missense_Mutation p.S131Y 0.23 deleterious(0) possibly_damaging(0.885) TCGA-DU-6392-01 6 34825955 34825955 C A UHRF1BP1 Missense_Mutation p.L608I 0.09 tolerated(0.36) benign(0.2) TCGA-DU-6392-01 6 35051220 35051220 C T ANKS1A Silent p.I978I 0.25 TCGA-DU-6392-01 6 35200674 35200674 C T SCUBE3 Missense_Mutation p.R173W 0.30 deleterious(0.02) probably_damaging(0.993) TCGA-DU-6392-01 6 35278292 35278292 G A DEF6 Silent p.T98T 0.50 TCGA-DU-6392-01 6 35446068 35446068 G A TEAD3 Missense_Mutation p.P172S 0.42 tolerated(0.08) benign(0.103) TCGA-DU-6392-01 6 35716414 35716414 G A ARMC12 Missense_Mutation p.A291T 0.36 tolerated(0.67) benign(0.001) TCGA-DU-6392-01 6 35716620 35716620 T C ARMC12 Silent p.S359S 0.31 TCGA-DU-6392-01 6 35755823 35755823 C A CLPSL1 3'UTR 0.44 TCGA-DU-6392-01 6 35810363 35810363 C A SRPK1 Missense_Mutation p.G547C 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 35912039 35912039 G A SLC26A8 Nonsense_Mutation p.Q851* 0.29 TCGA-DU-6392-01 6 35943152 35943152 C A SLC26A8 Missense_Mutation p.Q429H 0.29 deleterious(0) probably_damaging(0.967) TCGA-DU-6392-01 6 35949922 35949922 G A SLC26A8 Missense_Mutation p.T334M 0.44 tolerated(0.55) benign(0.045) TCGA-DU-6392-01 6 35980071 35980071 C A SLC26A8 Missense_Mutation p.K89N 0.10 deleterious(0) probably_damaging(0.955) TCGA-DU-6392-01 6 35987396 35987396 T C SLC26A8 Missense_Mutation p.Y30C 0.23 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 6 36103602 36103602 C T MAPK13 Silent p.I127I 0.45 TCGA-DU-6392-01 6 36107125 36107125 G A MAPK13 Missense_Mutation p.R358Q 0.53 tolerated(0.12) benign(0.073) TCGA-DU-6392-01 6 36178155 36178155 C T BRPF3 Nonsense_Mutation p.R677* 0.33 TCGA-DU-6392-01 6 36178260 36178260 G A BRPF3 Missense_Mutation p.E712K 0.39 tolerated(0.06) benign(0.275) TCGA-DU-6392-01 6 36262002 36262002 C A PNPLA1 Silent p.P180P 0.31 TCGA-DU-6392-01 6 36270205 36270205 C A PNPLA1 Missense_Mutation p.A448D 0.48 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-DU-6392-01 6 36298234 36298234 G A C6orf222 Silent p.P78P 0.36 TCGA-DU-6392-01 6 36343712 36343712 C A ETV7 Missense_Mutation p.E81D 0.14 deleterious(0.01) possibly_damaging(0.895) TCGA-DU-6392-01 6 36567704 36567704 C T SRSF3 Intron 0.58 TCGA-DU-6392-01 6 36870003 36870003 G A C6orf89 Missense_Mutation p.A73T 0.33 deleterious(0.01) benign(0.079) TCGA-DU-6392-01 6 36945015 36945015 G A MTCH1 Missense_Mutation p.R221C 0.08 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6392-01 6 36945433 36945433 C T MTCH1 Missense_Mutation p.R209H 0.53 tolerated(0.17) benign(0.058) TCGA-DU-6392-01 6 36949365 36949365 G A MTCH1 Silent p.Y135Y 0.44 TCGA-DU-6392-01 6 36949430 36949430 G A MTCH1 Missense_Mutation p.P114S 0.33 deleterious(0.03) benign(0.357) TCGA-DU-6392-01 6 37139015 37139015 A C PIM1 Missense_Mutation p.I119L 0.41 deleterious(0) benign(0.226) TCGA-DU-6392-01 6 37139065 37139065 A G PIM1 Silent p.E135E 0.13 TCGA-DU-6392-01 6 37298940 37298940 C T TBC1D22B Missense_Mutation p.R504C 0.41 deleterious_low_confidence(0) possibly_damaging(0.772) TCGA-DU-6392-01 6 37328321 37328321 G A RNF8 Missense_Mutation p.E71K 0.08 tolerated(0.08) possibly_damaging(0.703) TCGA-DU-6392-01 6 37429388 37429388 C T CMTR1 Nonsense_Mutation p.Q387* 0.25 TCGA-DU-6392-01 6 37450900 37450900 C T CCDC167 3'UTR 0.38 TCGA-DU-6392-01 6 37620022 37620022 C A MDGA1 Silent p.V359V 0.39 TCGA-DU-6392-01 6 38810662 38810662 C T DNAH8 Missense_Mutation p.H1393Y 0.10 benign(0) TCGA-DU-6392-01 6 38905866 38905866 G A DNAH8 Missense_Mutation p.A3677T 0.39 probably_damaging(0.996) TCGA-DU-6392-01 6 38905958 38905958 G A DNAH8 Silent p.T3707T 0.40 TCGA-DU-6392-01 6 38980372 38980372 G T DNAH8 Missense_Mutation p.R4341M 0.39 probably_damaging(0.997) TCGA-DU-6392-01 6 38998068 38998068 G A DNAH8 Missense_Mutation p.R4458Q 0.53 probably_damaging(1) TCGA-DU-6392-01 6 39159385 39159385 G A KCNK5 Missense_Mutation p.R261W 0.08 deleterious(0) possibly_damaging(0.822) TCGA-DU-6392-01 6 39284631 39284631 G A KCNK16 Silent p.G196G 0.36 TCGA-DU-6392-01 6 39285629 39285629 A G KCNK16 Missense_Mutation p.L143P 0.23 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 6 39290160 39290160 G A KCNK16 Missense_Mutation p.R53C 0.29 deleterious(0.01) probably_damaging(0.911) TCGA-DU-6392-01 6 39507779 39507779 C A KIF6 Nonsense_Mutation p.G549* 0.07 TCGA-DU-6392-01 6 39881125 39881125 G A MOCS1 Silent p.D231D 0.62 TCGA-DU-6392-01 6 39895295 39895295 C T MOCS1 Missense_Mutation p.R8H 0.31 tolerated_low_confidence(0.09) benign(0.202) TCGA-DU-6392-01 6 401645 401645 G A IRF4 Missense_Mutation p.G323R 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 4032437 4032437 G T PRPF4B Missense_Mutation p.R229I 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-DU-6392-01 6 40400646 40400646 G A LRFN2 Silent p.R69R 0.43 TCGA-DU-6392-01 6 4050046 4050046 C T PRPF4B Nonsense_Mutation p.R703* 0.34 TCGA-DU-6392-01 6 4070035 4070035 G T FAM217A Missense_Mutation p.P141H 0.34 deleterious(0.02) possibly_damaging(0.853) TCGA-DU-6392-01 6 40996205 40996205 C T UNC5CL Silent p.Q488Q 0.37 TCGA-DU-6392-01 6 40998181 40998181 C T UNC5CL Missense_Mutation p.G427D 0.41 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 6 41000828 41000828 C T UNC5CL Silent p.Q248Q 0.38 TCGA-DU-6392-01 6 41029259 41029259 G C APOBEC2 Silent p.L108L 0.38 TCGA-DU-6392-01 6 41165904 41165904 G A TREML2 Missense_Mutation p.R107C 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 41617440 41617440 C T MDFI Missense_Mutation p.R115W 0.08 deleterious(0.03) possibly_damaging(0.609) TCGA-DU-6392-01 6 41621130 41621130 C T MDFI Silent p.C186C 0.47 TCGA-DU-6392-01 6 41738413 41738413 G A FRS3 Nonsense_Mutation p.R475* 0.40 TCGA-DU-6392-01 6 41739216 41739216 T C FRS3 Missense_Mutation p.H207R 0.33 tolerated(0.15) benign(0.007) TCGA-DU-6392-01 6 41751912 41751912 A G PRICKLE4 Missense_Mutation p.N59S 0.30 tolerated(0.58) benign(0.007) TCGA-DU-6392-01 6 41773651 41773651 G T USP49 Silent p.L357L 0.28 TCGA-DU-6392-01 6 41773747 41773747 G A USP49 Silent p.C325C 0.32 TCGA-DU-6392-01 6 41773953 41773953 T C USP49 Missense_Mutation p.N257D 0.25 deleterious(0) possibly_damaging(0.673) TCGA-DU-6392-01 6 42224502 42224502 A T TRERF1 Silent p.A848A 0.12 TCGA-DU-6392-01 6 42712704 42712704 A G TBCC 3'UTR 0.64 TCGA-DU-6392-01 6 42821421 42821421 C T GLTSCR1L Missense_Mutation p.A664V 0.39 tolerated(0.5) benign(0.006) TCGA-DU-6392-01 6 42832680 42832680 G A GLTSCR1L Silent p.V912V 0.46 TCGA-DU-6392-01 6 42902286 42902286 G A CNPY3 Silent p.T75T 0.36 TCGA-DU-6392-01 6 42936095 42936095 G A PEX6 Silent p.L541L 0.38 TCGA-DU-6392-01 6 42975016 42975016 C T PPP2R5D Missense_Mutation p.T202I 0.35 deleterious(0.03) possibly_damaging(0.793) TCGA-DU-6392-01 6 42975803 42975803 G T PPP2R5D Missense_Mutation p.R286M 0.09 deleterious(0) probably_damaging(0.955) TCGA-DU-6392-01 6 42979086 42979086 C T PPP2R5D 3'UTR 0.50 TCGA-DU-6392-01 6 42980865 42980865 C A MEA1 Missense_Mutation p.Q97H 0.42 deleterious(0) possibly_damaging(0.876) TCGA-DU-6392-01 6 43006088 43006088 G A CUL7 Missense_Mutation p.R1648W 0.28 deleterious(0.01) benign(0.171) TCGA-DU-6392-01 6 43010902 43010902 G A CUL7 Silent p.S1208S 0.44 TCGA-DU-6392-01 6 43011309 43011309 C T CUL7 Missense_Mutation p.A1162T 0.28 tolerated(0.17) benign(0.042) TCGA-DU-6392-01 6 43023921 43023921 C T MRPL2 Missense_Mutation p.A140T 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 43106885 43106885 C T PTK7 Silent p.F466F 0.41 TCGA-DU-6392-01 6 43143694 43143694 C T SRF Missense_Mutation p.T344I 0.41 deleterious(0) benign(0.066) TCGA-DU-6392-01 6 43153263 43153263 G A CUL9 Missense_Mutation p.S222N 0.09 tolerated(0.38) probably_damaging(0.977) TCGA-DU-6392-01 6 43168246 43168246 C T CUL9 Missense_Mutation p.L1153F 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 43172550 43172550 C T CUL9 Silent p.S1468S 0.34 TCGA-DU-6392-01 6 43181530 43181530 C T CUL9 Silent p.N1856N 0.43 TCGA-DU-6392-01 6 43190124 43190124 C T CUL9 Missense_Mutation p.A2306V 0.35 deleterious(0.01) benign(0.096) TCGA-DU-6392-01 6 43223591 43223591 C T TTBK1 Silent p.Y286Y 0.26 TCGA-DU-6392-01 6 43251565 43251565 G A TTBK1 Silent p.P1029P 0.36 TCGA-DU-6392-01 6 43269964 43269964 G A SLC22A7 Missense_Mutation p.G363D 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 43270068 43270068 C T SLC22A7 Missense_Mutation p.R398C 0.24 deleterious(0.02) probably_damaging(0.971) TCGA-DU-6392-01 6 43306331 43306331 C A ZNF318 Missense_Mutation p.G1802V 0.11 possibly_damaging(0.89) TCGA-DU-6392-01 6 43307115 43307115 G A ZNF318 Missense_Mutation p.P1541S 0.09 probably_damaging(0.999) TCGA-DU-6392-01 6 43310568 43310568 G A ZNF318 Missense_Mutation p.A1041V 0.39 benign(0.041) TCGA-DU-6392-01 6 43316061 43316061 C T ZNF318 Splice_Site p.X1024_splice 0.34 TCGA-DU-6392-01 6 43322515 43322515 G A ZNF318 Nonsense_Mutation p.R853* 0.33 TCGA-DU-6392-01 6 43323412 43323412 G A ZNF318 Missense_Mutation p.P554S 0.43 benign(0.013) TCGA-DU-6392-01 6 43325153 43325153 C T ZNF318 Missense_Mutation p.R300Q 0.37 probably_damaging(0.999) TCGA-DU-6392-01 6 43325297 43325297 C T ZNF318 Missense_Mutation p.R252Q 0.38 probably_damaging(1) TCGA-DU-6392-01 6 43400140 43400140 T C ABCC10 Missense_Mutation p.L141S 0.24 deleterious(0.03) benign(0.166) TCGA-DU-6392-01 6 43400775 43400775 C A ABCC10 Missense_Mutation p.L353I 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-DU-6392-01 6 43410717 43410717 C A ABCC10 Missense_Mutation p.L746I 0.30 tolerated(1) possibly_damaging(0.771) TCGA-DU-6392-01 6 43415025 43415025 C T ABCC10 Missense_Mutation p.T1195M 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 43416862 43416862 C A ABCC10 Missense_Mutation p.L1375M 0.11 deleterious(0.01) probably_damaging(0.932) TCGA-DU-6392-01 6 43472904 43472904 C T TJAP1 Missense_Mutation p.R329C 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 6 43491355 43491355 C T XPO5 3'UTR 0.37 TCGA-DU-6392-01 6 43491580 43491580 C T XPO5 3'UTR 0.42 TCGA-DU-6392-01 6 43533394 43533394 C T XPO5 Intron 0.24 TCGA-DU-6392-01 6 43573029 43573029 G T POLH Missense_Mutation p.E349D 0.28 deleterious(0.03) benign(0.026) TCGA-DU-6392-01 6 43589883 43589883 C T GTPBP2 Missense_Mutation p.E497K 0.42 tolerated(0.67) benign(0.003) TCGA-DU-6392-01 6 43590374 43590374 C T GTPBP2 Missense_Mutation p.R488H 0.31 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 43748509 43748509 C T VEGFA Missense_Mutation p.R335C 0.32 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-DU-6392-01 6 43749754 43749754 A G VEGFA Missense_Mutation p.K383E 0.40 tolerated(0.1) probably_damaging(0.973) TCGA-DU-6392-01 6 44081608 44081608 A G MRPL14 Missense_Mutation p.V137A 0.47 deleterious(0) possibly_damaging(0.852) TCGA-DU-6392-01 6 44081740 44081740 C T MRPL14 Missense_Mutation p.G93D 0.36 tolerated(0.3) possibly_damaging(0.772) TCGA-DU-6392-01 6 44081861 44081861 G A MRPL14 Missense_Mutation p.R53W 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 44102296 44102296 A G TMEM63B Splice_Site 0.21 TCGA-DU-6392-01 6 44145044 44145044 G A CAPN11 Missense_Mutation p.A435T 0.30 tolerated(0.44) benign(0.002) TCGA-DU-6392-01 6 44219266 44219266 G A HSP90AB1 Missense_Mutation p.C412Y 0.50 tolerated(0.1) probably_damaging(0.918) TCGA-DU-6392-01 6 44227997 44227997 G A NFKBIE Missense_Mutation p.A407V 0.37 tolerated(0.07) possibly_damaging(0.903) TCGA-DU-6392-01 6 44250038 44250038 G T TCTE1 Missense_Mutation p.L369I 0.08 deleterious(0.04) probably_damaging(0.913) TCGA-DU-6392-01 6 44253802 44253802 C T TCTE1 Missense_Mutation p.V249I 0.09 tolerated(0.08) benign(0.162) TCGA-DU-6392-01 6 44971423 44971423 G A SUPT3H Silent p.D168D 0.34 TCGA-DU-6392-01 6 46107506 46107507 - A ENPP4 Frame_Shift_Ins p.N64Kfs*20 0.25 TCGA-DU-6392-01 6 46129422 46129422 A T ENPP5 Missense_Mutation p.F359I 0.08 deleterious(0) possibly_damaging(0.613) TCGA-DU-6392-01 6 46216554 46216554 A G RCAN2 Missense_Mutation p.I102T 0.55 deleterious(0) possibly_damaging(0.871) TCGA-DU-6392-01 6 46620341 46620341 G T CYP39A1 5'UTR 0.37 TCGA-DU-6392-01 6 46657579 46657579 C T TDRD6 Nonsense_Mutation p.R572* 0.35 TCGA-DU-6392-01 6 46806765 46806765 C T MEP1A Silent p.A711A 0.32 TCGA-DU-6392-01 6 46826266 46826266 G A GPR116 Missense_Mutation p.S1125F 0.34 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 6 46826811 46826811 C T GPR116 Silent p.K943K 0.38 TCGA-DU-6392-01 6 46836653 46836653 G T GPR116 Missense_Mutation p.L530M 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 46976733 46976733 T C GPR110 Missense_Mutation p.D813G 0.37 deleterious(0.03) possibly_damaging(0.796) TCGA-DU-6392-01 6 47221096 47221096 G A TNFRSF21 Missense_Mutation p.R469W 0.18 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 47253823 47253823 G A TNFRSF21 Missense_Mutation p.P202L 0.16 tolerated(0.06) benign(0.008) TCGA-DU-6392-01 6 47471062 47471062 A G CD2AP Silent p.E17E 0.08 TCGA-DU-6392-01 6 47580272 47580272 G T CD2AP Missense_Mutation p.E626D 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-DU-6392-01 6 47646785 47646785 G A GPR111 Missense_Mutation p.G129E 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 47976442 47976442 C T PTCHD4 Missense_Mutation p.A279T 0.29 tolerated(0.27) probably_damaging(0.995) TCGA-DU-6392-01 6 4892311 4892311 G A CDYL Missense_Mutation p.R130Q 0.50 tolerated(0.44) benign(0.022) TCGA-DU-6392-01 6 49412430 49412430 C T MUT Missense_Mutation p.C533Y 0.42 deleterious_low_confidence(0.03) possibly_damaging(0.769) TCGA-DU-6392-01 6 49448778 49448778 T A CENPQ Silent p.G154G 0.10 TCGA-DU-6392-01 6 49456375 49456375 C A CENPQ Missense_Mutation p.T218N 0.33 deleterious(0) benign(0.124) TCGA-DU-6392-01 6 4952499 4952499 G A CDYL Splice_Site p.X445_splice 0.12 TCGA-DU-6392-01 6 49585861 49585861 G A RHAG Missense_Mutation p.P138S 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-DU-6392-01 6 4996278 4996278 G T RPP40 Missense_Mutation p.P267H 0.34 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 6 4996525 4996525 G A RPP40 Missense_Mutation p.T230M 0.39 deleterious(0.05) benign(0.013) TCGA-DU-6392-01 6 50683315 50683315 G T TFAP2D Missense_Mutation p.D176Y 0.50 tolerated(0.1) benign(0.282) TCGA-DU-6392-01 6 50719023 50719023 T C TFAP2D Silent p.H375H 0.09 TCGA-DU-6392-01 6 50807964 50807964 G T TFAP2B Missense_Mutation p.D346Y 0.31 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 6 50810927 50810927 C T TFAP2B Missense_Mutation p.T402M 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 5109652 5109652 G A LYRM4 3'UTR 0.32 TCGA-DU-6392-01 6 51484203 51484203 C T PKHD1 Silent p.V3967V 0.44 TCGA-DU-6392-01 6 51524157 51524157 C T PKHD1 Silent p.Q3589Q 0.11 TCGA-DU-6392-01 6 51695675 51695675 G A PKHD1 Silent p.D2762D 0.46 TCGA-DU-6392-01 6 51748014 51748014 A G PKHD1 Silent p.S2409S 0.09 TCGA-DU-6392-01 6 52137116 52137116 T C MCM3 Missense_Mutation p.S649G 0.14 tolerated(0.38) benign(0.006) TCGA-DU-6392-01 6 52334250 52334250 G A EFHC1 Silent p.V419V 0.08 TCGA-DU-6392-01 6 52657702 52657702 G A GSTA1 Silent p.Y166Y 0.38 TCGA-DU-6392-01 6 52696717 52696717 G A GSTA5 Missense_Mutation p.P200S 0.41 deleterious(0) benign(0.3) TCGA-DU-6392-01 6 52698993 52698993 C A GSTA5 Missense_Mutation p.K120N 0.08 tolerated(0.43) benign(0.005) TCGA-DU-6392-01 6 52699064 52699064 C T GSTA5 Missense_Mutation p.E97K 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-DU-6392-01 6 52849275 52849275 G A GSTA4 Missense_Mutation p.P134L 0.33 deleterious(0.02) possibly_damaging(0.493) TCGA-DU-6392-01 6 52869894 52869895 - G ICK 3'UTR 0.32 TCGA-DU-6392-01 6 52993010 52993010 C T GCM1 Silent p.L435L 0.40 TCGA-DU-6392-01 6 52993556 52993556 C T GCM1 Silent p.Q253Q 0.43 TCGA-DU-6392-01 6 53139925 53139925 G T ELOVL5 Silent p.I180I 0.17 TCGA-DU-6392-01 6 53762158 53762158 G A LRRC1 Splice_Site p.X214_splice 0.70 TCGA-DU-6392-01 6 54208056 54208056 G A TINAG Silent p.E219E 0.38 TCGA-DU-6392-01 6 54208113 54208113 A C TINAG Missense_Mutation p.K238N 0.38 deleterious(0.05) possibly_damaging(0.688) TCGA-DU-6392-01 6 54214695 54214695 G A TINAG Splice_Site p.X360_splice 0.37 TCGA-DU-6392-01 6 54806043 54806043 G T FAM83B Missense_Mutation p.K758N 0.30 tolerated(0.09) probably_damaging(0.962) TCGA-DU-6392-01 6 55113475 55113475 G T HCRTR2 Missense_Mutation p.V88L 0.07 deleterious(0) probably_damaging(0.925) TCGA-DU-6392-01 6 55196545 55196545 T C GFRAL Missense_Mutation p.S19P 0.11 deleterious(0.01) benign(0.265) TCGA-DU-6392-01 6 5545496 5545496 C T FARS2 Missense_Mutation p.R330C 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 55625255 55625255 C A BMP5 Missense_Mutation p.Q368H 0.16 tolerated(0.11) possibly_damaging(0.825) TCGA-DU-6392-01 6 55684513 55684513 C T BMP5 Missense_Mutation p.R208Q 0.30 tolerated(0.41) benign(0.168) TCGA-DU-6392-01 6 55739531 55739531 T C BMP5 Missense_Mutation p.N45D 0.40 deleterious(0.05) possibly_damaging(0.484) TCGA-DU-6392-01 6 56352021 56352021 G A DST Silent p.N4353N 0.10 TCGA-DU-6392-01 6 56362694 56362695 - T DST Frame_Shift_Ins p.T4062Nfs*23 0.23 TCGA-DU-6392-01 6 56374448 56374448 G T DST Missense_Mutation p.S3712Y 0.47 probably_damaging(0.992) TCGA-DU-6392-01 6 56374499 56374499 T C DST Missense_Mutation p.Q3695R 0.31 benign(0.116) TCGA-DU-6392-01 6 56382357 56382357 G T DST Missense_Mutation p.S3441Y 0.30 probably_damaging(0.924) TCGA-DU-6392-01 6 56391170 56391170 G A DST Nonsense_Mutation p.R3417* 0.31 TCGA-DU-6392-01 6 56394563 56394563 C A DST Missense_Mutation p.D3137Y 0.50 probably_damaging(0.978) TCGA-DU-6392-01 6 56397210 56397210 C T DST Silent p.V3057V 0.44 TCGA-DU-6392-01 6 56401697 56401697 C T DST Silent p.Q2927Q 0.42 TCGA-DU-6392-01 6 56417281 56417281 C T DST Missense_Mutation p.A2814T 0.43 benign(0.012) TCGA-DU-6392-01 6 56468010 56468010 G T DST Intron 0.25 TCGA-DU-6392-01 6 56468377 56468377 T G DST Intron 0.12 TCGA-DU-6392-01 6 56492955 56492955 G A DST Missense_Mutation p.R957W 0.23 probably_damaging(0.961) TCGA-DU-6392-01 6 56506847 56506847 G A DST Missense_Mutation p.A105V 0.36 probably_damaging(0.999) TCGA-DU-6392-01 6 56918203 56918203 G T KIAA1586 Missense_Mutation p.K302N 0.40 tolerated(0.21) benign(0.055) TCGA-DU-6392-01 6 6318784 6318784 C T F13A1 Silent p.R38R 0.30 TCGA-DU-6392-01 6 63990679 63990679 G T LGSN Silent p.S259S 0.10 TCGA-DU-6392-01 6 64290252 64290252 A G PTP4A1 3'UTR 0.62 TCGA-DU-6392-01 6 64395427 64395427 G A PHF3 Missense_Mutation p.A602T 0.37 tolerated(0.71) benign(0.001) TCGA-DU-6392-01 6 64401711 64401711 C T PHF3 Silent p.G758G 0.36 TCGA-DU-6392-01 6 656183 656183 A G HUS1B Silent p.I254I 0.10 TCGA-DU-6392-01 6 656869 656869 G A HUS1B Silent p.L26L 0.38 TCGA-DU-6392-01 6 70071116 70071116 T C BAI3 Silent p.N1317N 0.08 TCGA-DU-6392-01 6 70840080 70840080 G T COL19A1 Missense_Mutation p.D450Y 0.34 deleterious(0.03) benign(0.061) TCGA-DU-6392-01 6 70944298 70944298 T C COL9A1 Splice_Site p.X754_splice 0.12 TCGA-DU-6392-01 6 70964198 70964198 G A COL9A1 Missense_Mutation p.A567V 0.46 benign(0.017) TCGA-DU-6392-01 6 70984468 70984468 G A COL9A1 Missense_Mutation p.T328I 0.44 probably_damaging(0.999) TCGA-DU-6392-01 6 71003927 71003927 G A COL9A1 Silent p.D213D 0.33 TCGA-DU-6392-01 6 71234659 71234659 T C FAM135A Silent p.D624D 0.31 TCGA-DU-6392-01 6 71236045 71236045 G T FAM135A Missense_Mutation p.E1086D 0.15 tolerated(0.31) benign(0.012) TCGA-DU-6392-01 6 7230522 7230522 C T RREB1 Silent p.I730I 0.44 TCGA-DU-6392-01 6 7231482 7231482 G A RREB1 Silent p.P1050P 0.35 TCGA-DU-6392-01 6 7231795 7231795 C T RREB1 Missense_Mutation p.R1155W 0.43 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 72945373 72945373 T G RIMS1 Missense_Mutation p.V600G 0.44 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 6 73110297 73110297 G A RIMS1 Missense_Mutation p.G1654R 0.47 deleterious(0) probably_damaging(0.973) TCGA-DU-6392-01 6 73713638 73713638 C A KCNQ5 Missense_Mutation p.L136I 0.11 tolerated(0.19) possibly_damaging(0.727) TCGA-DU-6392-01 6 73904319 73904319 G A KCNQ5 Missense_Mutation p.V680M 0.09 tolerated(0.13) possibly_damaging(0.88) TCGA-DU-6392-01 6 73905007 73905007 C T KCNQ5 Missense_Mutation p.P909L 0.26 deleterious_low_confidence(0.05) benign(0.036) TCGA-DU-6392-01 6 73951801 73951801 T C KHDC1 Missense_Mutation p.Q164R 0.36 tolerated(0.52) benign(0.351) TCGA-DU-6392-01 6 73952237 73952237 C T KHDC1 Missense_Mutation p.D75N 0.38 tolerated_low_confidence(0.73) possibly_damaging(0.782) TCGA-DU-6392-01 6 7401281 7401281 G T RIOK1 Nonsense_Mutation p.E191* 0.30 TCGA-DU-6392-01 6 74073391 74073391 C T KHDC3L Silent p.A154A 0.42 TCGA-DU-6392-01 6 74104640 74104640 C T DDX43 Silent p.H4H 0.11 TCGA-DU-6392-01 6 74104764 74104764 G A DDX43 Missense_Mutation p.G46S 0.37 tolerated(0.16) benign(0.036) TCGA-DU-6392-01 6 7411575 7411575 G A RIOK1 Missense_Mutation p.R427Q 0.38 tolerated(0.87) benign(0.006) TCGA-DU-6392-01 6 74123458 74123458 G T DDX43 Missense_Mutation p.Q482H 0.38 tolerated(0.17) benign(0.001) TCGA-DU-6392-01 6 74229613 74229613 G T EEF1A1 Missense_Mutation p.A46D 0.37 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-DU-6392-01 6 74304812 74304812 T C SLC17A5 Silent p.G492G 0.30 TCGA-DU-6392-01 6 74468752 74468752 G T CD109 Splice_Site p.X253_splice 0.24 TCGA-DU-6392-01 6 74517834 74517835 - T CD109 Frame_Shift_Ins p.L1075Ffs*4 0.27 TCGA-DU-6392-01 6 74520848 74520848 G A CD109 Missense_Mutation p.R1227H 0.57 tolerated(0.28) benign(0.006) TCGA-DU-6392-01 6 75797421 75797421 C T COL12A1 Missense_Mutation p.G3018D 0.31 probably_damaging(1) TCGA-DU-6392-01 6 7580863 7580863 C A DSP Missense_Mutation p.N1480K 0.30 benign(0.119) TCGA-DU-6392-01 6 7581571 7581571 G C DSP Missense_Mutation p.E1716D 0.34 benign(0.007) TCGA-DU-6392-01 6 7581603 7581603 T C DSP Missense_Mutation p.L1727P 0.47 possibly_damaging(0.883) TCGA-DU-6392-01 6 7583532 7583532 C T DSP Missense_Mutation p.R2013W 0.36 possibly_damaging(0.895) TCGA-DU-6392-01 6 7583670 7583670 A C DSP Missense_Mutation p.I2059L 0.10 benign(0.006) TCGA-DU-6392-01 6 7583868 7583868 C T DSP Silent p.L2125L 0.48 TCGA-DU-6392-01 6 75843580 75843580 C A COL12A1 Missense_Mutation p.E1886D 0.36 benign(0.083) TCGA-DU-6392-01 6 75844497 75844497 T C COL12A1 Silent p.V1823V 0.34 TCGA-DU-6392-01 6 75844499 75844499 C T COL12A1 Missense_Mutation p.V1823I 0.30 probably_damaging(0.997) TCGA-DU-6392-01 6 7584793 7584793 G A DSP Missense_Mutation p.C2433Y 0.13 probably_damaging(0.998) TCGA-DU-6392-01 6 75875447 75875447 G A COL12A1 Missense_Mutation p.S920L 0.17 benign(0.111) TCGA-DU-6392-01 6 75893332 75893332 A G COL12A1 Missense_Mutation p.V442A 0.35 probably_damaging(0.996) TCGA-DU-6392-01 6 75977354 75977354 G T TMEM30A Intron 0.30 TCGA-DU-6392-01 6 76018323 76018323 T C FILIP1 3'UTR 0.11 TCGA-DU-6392-01 6 76018573 76018573 C T FILIP1 Missense_Mutation p.R1159H 0.07 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 76343307 76343307 G A SENP6 Missense_Mutation p.R73Q 0.08 tolerated(0.31) benign(0.001) TCGA-DU-6392-01 6 76343439 76343439 T C SENP6 Missense_Mutation p.L117S 0.32 tolerated(0.1) probably_damaging(0.997) TCGA-DU-6392-01 6 76385598 76385598 G T SENP6 Missense_Mutation p.E483D 0.30 tolerated(0.11) benign(0.002) TCGA-DU-6392-01 6 76412676 76412676 G A SENP6 Silent p.A868A 0.42 TCGA-DU-6392-01 6 76582984 76582984 G A MYO6 Missense_Mutation p.G682S 0.26 deleterious(0) unknown(0) TCGA-DU-6392-01 6 76618317 76618317 C T MYO6 Missense_Mutation p.R1129C 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 76715175 76715175 G T IMPG1 Missense_Mutation p.L322I 0.37 tolerated(0.31) possibly_damaging(0.519) TCGA-DU-6392-01 6 7862681 7862681 G A BMP6 Missense_Mutation p.R385H 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-DU-6392-01 6 7891855 7891855 T G TXNDC5 Missense_Mutation p.K244T 0.11 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 6 79650991 79650991 C A PHIP Nonsense_Mutation p.G1629* 0.16 TCGA-DU-6392-01 6 79655810 79655810 A G PHIP Missense_Mutation p.V1513A 0.20 tolerated_low_confidence(0.6) benign(0.014) TCGA-DU-6392-01 6 79657341 79657341 C A PHIP Missense_Mutation p.R1402M 0.35 deleterious(0) possibly_damaging(0.723) TCGA-DU-6392-01 6 79700587 79700587 T C PHIP Missense_Mutation p.K773E 0.09 tolerated(0.25) probably_damaging(0.931) TCGA-DU-6392-01 6 80196729 80196729 G A LCA5 Silent p.L696L 0.12 TCGA-DU-6392-01 6 80197018 80197018 C A LCA5 Missense_Mutation p.E599D 0.38 tolerated(0.14) possibly_damaging(0.839) TCGA-DU-6392-01 6 80626278 80626278 A G ELOVL4 3'UTR 0.43 TCGA-DU-6392-01 6 80717747 80717747 G T TTK Missense_Mutation p.A121S 0.31 deleterious(0.01) probably_damaging(0.925) TCGA-DU-6392-01 6 80744846 80744846 C T TTK Nonsense_Mutation p.R587* 0.38 TCGA-DU-6392-01 6 82459934 82459934 C A FAM46A Missense_Mutation p.Q269H 0.30 tolerated(0.28) benign(0.012) TCGA-DU-6392-01 6 82883084 82883084 T C IBTK Missense_Mutation p.N1266S 0.25 tolerated(0.08) benign(0.014) TCGA-DU-6392-01 6 82883097 82883097 G T IBTK Missense_Mutation p.L1262I 0.28 tolerated_low_confidence(0.23) benign(0.003) TCGA-DU-6392-01 6 82912354 82912354 T G IBTK Missense_Mutation p.K874Q 0.42 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 6 82925825 82925825 G T IBTK Missense_Mutation p.N523K 0.32 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 6 82933169 82933169 T C IBTK Missense_Mutation p.K371R 0.10 deleterious(0.04) possibly_damaging(0.757) TCGA-DU-6392-01 6 83667135 83667135 G T UBE3D Missense_Mutation p.H349N 0.11 deleterious(0.01) possibly_damaging(0.88) TCGA-DU-6392-01 6 83831684 83831684 T G DOPEY1 Missense_Mutation p.F379V 0.40 tolerated(0.46) probably_damaging(0.997) TCGA-DU-6392-01 6 83848136 83848136 C A DOPEY1 Missense_Mutation p.L1459I 0.10 deleterious(0) probably_damaging(0.945) TCGA-DU-6392-01 6 83857007 83857007 A G DOPEY1 Missense_Mutation p.Q1910R 0.31 deleterious(0.01) benign(0.038) TCGA-DU-6392-01 6 83938602 83938602 C A ME1 Nonsense_Mutation p.E359* 0.33 TCGA-DU-6392-01 6 8428253 8428253 G T SLC35B3 Silent p.G112G 0.11 TCGA-DU-6392-01 6 84865090 84865090 G T KIAA1009 Missense_Mutation p.A974D 0.22 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 6 86224236 86224236 G T SNX14 Missense_Mutation p.L794M 0.29 tolerated(0.31) benign(0.142) TCGA-DU-6392-01 6 86227481 86227481 T C SNX14 Missense_Mutation p.N754S 0.43 tolerated(0.35) benign(0.011) TCGA-DU-6392-01 6 86332297 86332297 C T SYNCRIP Missense_Mutation p.R304H 0.29 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 6 87943143 87943143 G A ZNF292 Silent p.K213K 0.38 TCGA-DU-6392-01 6 87966302 87966302 T G ZNF292 Silent p.G985G 0.41 TCGA-DU-6392-01 6 87968797 87968797 G A ZNF292 Missense_Mutation p.S1817N 0.35 tolerated_low_confidence(0.85) benign(0.001) TCGA-DU-6392-01 6 87969868 87969868 G A ZNF292 Missense_Mutation p.C2174Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 6 87970355 87970356 - A ZNF292 Frame_Shift_Ins p.N2339Kfs*2 0.28 TCGA-DU-6392-01 6 87970632 87970632 C T ZNF292 Missense_Mutation p.R2429W 0.38 deleterious(0) possibly_damaging(0.556) TCGA-DU-6392-01 6 88229379 88229379 T C RARS2 Missense_Mutation p.R387G 0.08 deleterious(0.01) benign(0.278) TCGA-DU-6392-01 6 88251665 88251665 G A RARS2 Nonsense_Mutation p.Q195* 0.26 TCGA-DU-6392-01 6 88317493 88317493 C T ORC3 Missense_Mutation p.T177I 0.34 tolerated(0.71) benign(0.001) TCGA-DU-6392-01 6 88331704 88331704 G A ORC3 Silent p.A386A 0.08 TCGA-DU-6392-01 6 88763681 88763681 G A SPACA1 Missense_Mutation p.V76I 0.10 deleterious_low_confidence(0.05) possibly_damaging(0.722) TCGA-DU-6392-01 6 88853504 88853504 C T CNR1 3'UTR 0.09 TCGA-DU-6392-01 6 88853609 88853609 G T CNR1 Missense_Mutation p.S462Y 0.35 deleterious(0.01) probably_damaging(0.972) TCGA-DU-6392-01 6 89790668 89790668 G A PNRC1 Missense_Mutation p.A19T 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-6392-01 6 89808362 89808362 C T SRSF12 Missense_Mutation p.A241T 0.42 tolerated_low_confidence(0.17) benign(0) TCGA-DU-6392-01 6 89859062 89859062 C A PM20D2 Missense_Mutation p.L182I 0.10 tolerated(0.43) benign(0.023) TCGA-DU-6392-01 6 89891699 89891699 C T GABRR1 Missense_Mutation p.A292T 0.39 tolerated(0.17) probably_damaging(1) TCGA-DU-6392-01 6 89899961 89899961 G A GABRR1 Missense_Mutation p.T193I 0.11 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 6 89977468 89977468 C T GABRR2 Silent p.K222K 0.27 TCGA-DU-6392-01 6 90340257 90340257 G A ANKRD6 Missense_Mutation p.R573K 0.32 tolerated(0.08) benign(0.005) TCGA-DU-6392-01 6 90384300 90384300 A C MDN1 Missense_Mutation p.L4257R 0.17 possibly_damaging(0.736) TCGA-DU-6392-01 6 90394655 90394655 G T MDN1 Missense_Mutation p.F3923L 0.44 possibly_damaging(0.8) TCGA-DU-6392-01 6 90428292 90428292 T C MDN1 Missense_Mutation p.R2126G 0.30 benign(0.326) TCGA-DU-6392-01 6 90460196 90460196 G T MDN1 Missense_Mutation p.Q1095K 0.11 benign(0.002) TCGA-DU-6392-01 6 90468059 90468059 G A MDN1 Missense_Mutation p.R873W 0.43 probably_damaging(1) TCGA-DU-6392-01 6 90513145 90513145 G A MDN1 Silent p.A77A 0.40 TCGA-DU-6392-01 6 90573337 90573337 G A CASP8AP2 RNA 0.50 TCGA-DU-6392-01 6 90605392 90605392 T C GJA10 Missense_Mutation p.L402P 0.11 deleterious(0) possibly_damaging(0.653) TCGA-DU-6392-01 6 90648063 90648063 G A BACH2 Missense_Mutation p.L615F 0.41 deleterious(0) possibly_damaging(0.908) TCGA-DU-6392-01 6 90660619 90660619 C T BACH2 Silent p.V402V 0.38 TCGA-DU-6392-01 6 93953252 93953252 C T EPHA7 Silent p.V963V 0.37 TCGA-DU-6392-01 6 93982040 93982040 T G EPHA7 Missense_Mutation p.E475D 0.10 tolerated(0.88) benign(0.101) TCGA-DU-6392-01 6 94120584 94120584 G A EPHA7 Missense_Mutation p.T156I 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 6 96651394 96651394 T A FUT9 Silent p.P121P 0.18 TCGA-DU-6392-01 6 97247454 97247454 C T GPR63 Missense_Mutation p.A52T 0.24 tolerated_low_confidence(0.55) benign(0) TCGA-DU-6392-01 6 97339264 97339264 T C NDUFAF4 Missense_Mutation p.K82E 0.16 tolerated(0.43) benign(0.05) TCGA-DU-6392-01 6 99848985 99848985 G A PNISR Missense_Mutation p.R617C 0.41 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-DU-6392-01 6 99850491 99850491 G A PNISR Nonsense_Mutation p.R418* 0.31 TCGA-DU-6392-01 6 99860437 99860437 C T PNISR Missense_Mutation p.M89I 0.40 deleterious(0.03) benign(0.026) TCGA-DU-6392-01 7 100006188 100006188 G T ZCWPW1 Silent p.I321I 0.53 TCGA-DU-6392-01 7 100016806 100016806 A C ZCWPW1 Missense_Mutation p.S97A 0.26 tolerated(0.25) benign(0.006) TCGA-DU-6392-01 7 100028273 100028273 C T MEPCE Missense_Mutation p.A211V 0.30 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 7 100071955 100071955 A C TSC22D4 Missense_Mutation p.F291V 0.57 deleterious(0.03) benign(0.05) TCGA-DU-6392-01 7 100160220 100160220 C A AGFG2 Silent p.L334L 0.10 TCGA-DU-6392-01 7 100190525 100190525 C A FBXO24 Silent p.V264V 0.24 TCGA-DU-6392-01 7 100198336 100198336 C T FBXO24 Silent p.C557C 0.58 TCGA-DU-6392-01 7 100205657 100205657 G T PCOLCE Missense_Mutation p.Q427H 0.27 deleterious(0) benign(0.042) TCGA-DU-6392-01 7 100211276 100211276 G A MOSPD3 Missense_Mutation p.R153H 0.31 tolerated(0.65) benign(0) TCGA-DU-6392-01 7 100218520 100218520 G A TFR2 Missense_Mutation p.A789V 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-DU-6392-01 7 100244418 100244418 C T ACTL6B Missense_Mutation p.V325M 0.16 tolerated(0.3) benign(0.418) TCGA-DU-6392-01 7 100253147 100253147 C A ACTL6B Missense_Mutation p.E55D 0.07 tolerated(1) benign(0.006) TCGA-DU-6392-01 7 100273886 100273886 G A GNB2 5'UTR 0.41 TCGA-DU-6392-01 7 100276322 100276322 C T GNB2 Silent p.V307V 0.52 TCGA-DU-6392-01 7 100280061 100280061 G A GIGYF1 Missense_Mutation p.T882M 0.48 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 7 100373104 100373104 G T ZAN Missense_Mutation p.K1977N 0.28 unknown(0) TCGA-DU-6392-01 7 100410454 100410454 C T EPHB4 Missense_Mutation p.R678H 0.29 tolerated(0.48) benign(0.005) TCGA-DU-6392-01 7 100451797 100451797 G A SLC12A9 5'UTR 0.41 TCGA-DU-6392-01 7 100453411 100453411 G A SLC12A9 Missense_Mutation p.V134I 0.32 deleterious(0.03) benign(0.005) TCGA-DU-6392-01 7 100457591 100457591 G A SLC12A9 Silent p.A354A 0.26 TCGA-DU-6392-01 7 100485034 100485034 G A SRRT Missense_Mutation p.R690H 0.63 tolerated(0.09) possibly_damaging(0.806) TCGA-DU-6392-01 7 100487815 100487815 A G ACHE 3'UTR 0.21 TCGA-DU-6392-01 7 100490882 100490882 G A ACHE Silent p.S324S 0.19 TCGA-DU-6392-01 7 100491199 100491199 C T ACHE Missense_Mutation p.A219T 0.17 deleterious(0.02) benign(0.071) TCGA-DU-6392-01 7 100491612 100491612 G A ACHE Missense_Mutation p.P81L 0.35 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 7 100549631 100549631 G T MUC3A Missense_Mutation p.R71M 0.14 deleterious(0) unknown(0) TCGA-DU-6392-01 7 100674976 100674976 G A MUC17 Silent p.S93S 0.29 TCGA-DU-6392-01 7 100675687 100675687 T G MUC17 Silent p.T330T 0.06 TCGA-DU-6392-01 7 100676655 100676655 C A MUC17 Missense_Mutation p.P653H 0.07 probably_damaging(0.991) TCGA-DU-6392-01 7 100677590 100677590 C T MUC17 Missense_Mutation p.P965S 0.49 possibly_damaging(0.451) TCGA-DU-6392-01 7 100678180 100678180 G A MUC17 Silent p.P1161P 0.56 TCGA-DU-6392-01 7 100679256 100679256 C A MUC17 Missense_Mutation p.P1520H 0.22 unknown(0) TCGA-DU-6392-01 7 100680859 100680859 G A MUC17 Silent p.T2054T 0.59 TCGA-DU-6392-01 7 100681191 100681191 G A MUC17 Missense_Mutation p.S2165N 0.06 unknown(0) TCGA-DU-6392-01 7 100682290 100682290 G T MUC17 Missense_Mutation p.E2531D 0.06 probably_damaging(0.931) TCGA-DU-6392-01 7 100683263 100683263 G T MUC17 Missense_Mutation p.G2856C 0.58 unknown(0) TCGA-DU-6392-01 7 100684837 100684837 T A MUC17 Silent p.S3380S 0.07 TCGA-DU-6392-01 7 100684913 100684913 G A MUC17 Missense_Mutation p.V3406I 0.09 benign(0.255) TCGA-DU-6392-01 7 100686241 100686241 C A MUC17 Silent p.T3848T 0.55 TCGA-DU-6392-01 7 100693793 100693793 G A MUC17 Missense_Mutation p.V4251I 0.52 unknown(0) TCGA-DU-6392-01 7 100780776 100780776 G A SERPINE1 3'UTR 0.48 TCGA-DU-6392-01 7 100839254 100839254 G A MOGAT3 Silent p.P333P 0.21 TCGA-DU-6392-01 7 100843729 100843729 G T MOGAT3 Nonsense_Mutation p.Y59* 0.28 TCGA-DU-6392-01 7 100859762 100859762 C A PLOD3 Missense_Mutation p.K89N 0.27 deleterious(0) probably_damaging(0.979) TCGA-DU-6392-01 7 100959652 100959652 G A RABL5 Silent p.G126G 0.55 TCGA-DU-6392-01 7 101838849 101838849 C T CUX1 Silent p.N407N 0.31 TCGA-DU-6392-01 7 101845057 101845057 C T CUX1 Missense_Mutation p.A838V 0.47 tolerated(0.14) unknown(0) TCGA-DU-6392-01 7 101877506 101877506 G A CUX1 Missense_Mutation p.R1214Q 0.27 deleterious(0.02) unknown(0) TCGA-DU-6392-01 7 101891755 101891755 C T CUX1 Silent p.G1328G 0.38 TCGA-DU-6392-01 7 102087139 102087139 C T ORAI2 Silent p.S135S 0.62 TCGA-DU-6392-01 7 102098304 102098304 C T ALKBH4 Missense_Mutation p.R149Q 0.56 tolerated(0.73) benign(0.004) TCGA-DU-6392-01 7 102110021 102110021 C T LRWD1 Missense_Mutation p.T410M 0.26 deleterious(0) probably_damaging(0.975) TCGA-DU-6392-01 7 102235802 102235802 G T RASA4 Missense_Mutation p.L341M 0.14 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 102574889 102574889 A T LRRC17 Missense_Mutation p.M177L 0.07 tolerated(1) benign(0.001) TCGA-DU-6392-01 7 102760494 102760494 C T NAPEPLD Silent p.S157S 0.26 TCGA-DU-6392-01 7 102915988 102915988 G A DPY19L2P2 RNA 0.54 TCGA-DU-6392-01 7 102944426 102944426 G A PMPCB Missense_Mutation p.A199T 0.08 deleterious(0.03) benign(0.234) TCGA-DU-6392-01 7 102956235 102956235 C T DNAJC2 Missense_Mutation p.A538T 0.49 tolerated(0.26) probably_damaging(0.957) TCGA-DU-6392-01 7 103003137 103003137 G A PSMC2 Missense_Mutation p.D143N 0.51 tolerated(0.22) possibly_damaging(0.848) TCGA-DU-6392-01 7 103132400 103132400 C T RELN Missense_Mutation p.R3148K 0.25 tolerated(0.64) benign(0.094) TCGA-DU-6392-01 7 103138684 103138684 G A RELN Missense_Mutation p.R2895C 0.11 deleterious(0.03) probably_damaging(0.991) TCGA-DU-6392-01 7 103159852 103159852 C T RELN Missense_Mutation p.V2594I 0.25 tolerated(0.12) probably_damaging(0.941) TCGA-DU-6392-01 7 103202385 103202385 C A RELN Silent p.R1742R 0.17 TCGA-DU-6392-01 7 103234855 103234855 G T RELN Missense_Mutation p.D1208E 0.62 tolerated(0.13) benign(0.06) TCGA-DU-6392-01 7 103293192 103293192 A G RELN Silent p.V523V 0.06 TCGA-DU-6392-01 7 104722214 104722214 C T KMT2E Missense_Mutation p.T443I 0.07 deleterious(0) possibly_damaging(0.803) TCGA-DU-6392-01 7 104742434 104742434 G A KMT2E Silent p.Q663Q 0.55 TCGA-DU-6392-01 7 104753353 104753353 C A KMT2E Missense_Mutation p.P1717Q 0.60 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-DU-6392-01 7 105177032 105177032 C T RINT1 Missense_Mutation p.L37F 0.30 tolerated_low_confidence(0.37) benign(0.136) TCGA-DU-6392-01 7 105662783 105662783 C T CDHR3 Silent p.D655D 0.62 TCGA-DU-6392-01 7 105664969 105664969 G T CDHR3 Missense_Mutation p.R740I 0.23 tolerated(0.22) benign(0.037) TCGA-DU-6392-01 7 105893480 105893480 G T NAMPT Missense_Mutation p.L450I 0.19 tolerated(0.44) benign(0.024) TCGA-DU-6392-01 7 105909631 105909631 T A NAMPT Missense_Mutation p.D192V 0.67 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 7 105925305 105925305 A G NAMPT Missense_Mutation p.F9S 0.50 tolerated(0.35) benign(0.006) TCGA-DU-6392-01 7 106508578 106508578 G A PIK3CG Missense_Mutation p.R191H 0.26 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 106509841 106509841 C T PIK3CG Missense_Mutation p.A612V 0.32 tolerated(0.12) benign(0.063) TCGA-DU-6392-01 7 106871105 106871105 C T COG5 Missense_Mutation p.R739Q 0.07 tolerated(0.14) possibly_damaging(0.593) TCGA-DU-6392-01 7 106898773 106898773 C A COG5 Missense_Mutation p.R575I 0.09 deleterious(0.04) benign(0.026) TCGA-DU-6392-01 7 107114902 107114903 - T GPR22 Frame_Shift_Ins p.A135Cfs*8 0.40 TCGA-DU-6392-01 7 107314714 107314714 C A SLC26A4 Missense_Mutation p.T174N 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 7 107323797 107323797 G A SLC26A4 Missense_Mutation p.V306M 0.21 tolerated(0.42) probably_damaging(1) TCGA-DU-6392-01 7 107330592 107330592 C T SLC26A4 Silent p.S391S 0.11 TCGA-DU-6392-01 7 107399325 107399325 C T CBLL1 Missense_Mutation p.A393V 0.27 tolerated(0.16) benign(0.359) TCGA-DU-6392-01 7 107399540 107399540 C T CBLL1 Nonsense_Mutation p.R465* 0.10 TCGA-DU-6392-01 7 107415298 107415298 C T SLC26A3 Missense_Mutation p.R566Q 0.31 tolerated(0.06) benign(0.382) TCGA-DU-6392-01 7 107427951 107427951 G A SLC26A3 Silent p.L247L 0.63 TCGA-DU-6392-01 7 107600145 107600145 C T LAMB1 Missense_Mutation p.G817R 0.27 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 7 107696370 107696370 G A LAMB4 Silent p.S1154S 0.61 TCGA-DU-6392-01 7 107707029 107707029 A T LAMB4 Silent p.P821P 0.14 TCGA-DU-6392-01 7 107752304 107752304 C T LAMB4 Missense_Mutation p.V94I 0.23 deleterious(0) benign(0.124) TCGA-DU-6392-01 7 107763606 107763606 G A LAMB4 Nonsense_Mutation p.Q2* 0.86 TCGA-DU-6392-01 7 107834511 107834511 C T NRCAM Missense_Mutation p.V579I 0.49 tolerated(0.24) benign(0.003) TCGA-DU-6392-01 7 108205181 108205181 A G THAP5 Silent p.S214S 0.54 TCGA-DU-6392-01 7 11075411 11075411 C T PHF14 Nonsense_Mutation p.Q534* 0.26 TCGA-DU-6392-01 7 11076172 11076172 G A PHF14 Missense_Mutation p.R577H 0.29 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 7 110763060 110763060 A T LRRN3 Missense_Mutation p.T78S 0.07 tolerated(1) benign(0.437) TCGA-DU-6392-01 7 11091395 11091395 G A PHF14 Silent p.P823P 0.38 TCGA-DU-6392-01 7 111484843 111484843 C T DOCK4 Missense_Mutation p.M904I 0.08 tolerated(0.09) benign(0.013) TCGA-DU-6392-01 7 111617249 111617249 G A DOCK4 Silent p.N213N 0.27 TCGA-DU-6392-01 7 112407237 112407237 G A TMEM168 3'UTR 0.57 TCGA-DU-6392-01 7 112424426 112424426 G A TMEM168 Missense_Mutation p.T152I 0.10 tolerated(0.22) benign(0.003) TCGA-DU-6392-01 7 112461820 112461820 G A C7orf60 Silent p.D399D 0.53 TCGA-DU-6392-01 7 113519733 113519733 C A PPP1R3A Nonsense_Mutation p.G472* 0.25 TCGA-DU-6392-01 7 114302238 114302238 C T FOXP2 Missense_Mutation p.T614I 0.10 deleterious(0) benign(0.016) TCGA-DU-6392-01 7 114304486 114304486 G A FOXP2 Silent p.P691P 0.21 TCGA-DU-6392-01 7 115889304 115889304 C T TES Missense_Mutation p.P115L 0.58 deleterious(0.01) possibly_damaging(0.658) TCGA-DU-6392-01 7 116199359 116199359 G T CAV1 3'UTR 0.35 TCGA-DU-6392-01 7 116395560 116395560 C T MET Missense_Mutation p.T618M 0.50 tolerated(0.09) probably_damaging(0.935) TCGA-DU-6392-01 7 116399498 116399498 C T MET Missense_Mutation p.P791L 0.26 tolerated(0.18) benign(0.006) TCGA-DU-6392-01 7 116418857 116418857 A G MET Missense_Mutation p.Q1141R 0.10 deleterious(0) probably_damaging(0.975) TCGA-DU-6392-01 7 116435789 116435789 T C MET Silent p.T1311T 0.55 TCGA-DU-6392-01 7 116436105 116436105 C A MET Missense_Mutation p.S1385Y 0.58 deleterious(0.01) possibly_damaging(0.898) TCGA-DU-6392-01 7 116436203 116436203 G A MET 3'UTR 0.07 TCGA-DU-6392-01 7 116533072 116533072 A G CAPZA2 Missense_Mutation p.D43G 0.09 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 7 11676125 11676125 C T THSD7A Silent p.T218T 0.26 TCGA-DU-6392-01 7 116862958 116862958 G A ST7 Missense_Mutation p.C561Y 0.08 deleterious_low_confidence(0.01) benign(0.068) TCGA-DU-6392-01 7 116963006 116963006 G T WNT2 Missense_Mutation p.P13H 0.33 tolerated(0.15) unknown(0) TCGA-DU-6392-01 7 117424357 117424357 G T CTTNBP2 Silent p.S740S 0.27 TCGA-DU-6392-01 7 117432640 117432640 T A CTTNBP2 Nonsense_Mutation p.K204* 0.52 TCGA-DU-6392-01 7 117874815 117874815 G T ANKRD7 Missense_Mutation p.D119Y 0.20 deleterious(0) possibly_damaging(0.739) TCGA-DU-6392-01 7 120739988 120739988 C T CPED1 Missense_Mutation p.T253M 0.17 deleterious(0.01) possibly_damaging(0.894) TCGA-DU-6392-01 7 121650943 121650943 G T PTPRZ1 Nonsense_Mutation p.E615* 0.20 TCGA-DU-6392-01 7 121651950 121651950 G A PTPRZ1 Silent p.V950V 0.25 TCGA-DU-6392-01 7 121652220 121652220 G A PTPRZ1 Silent p.A1040A 0.26 TCGA-DU-6392-01 7 121653746 121653746 G A PTPRZ1 Missense_Mutation p.S1549N 0.29 deleterious(0) probably_damaging(0.972) TCGA-DU-6392-01 7 121698887 121698887 T C PTPRZ1 Missense_Mutation p.C2188R 0.09 deleterious(0) possibly_damaging(0.804) TCGA-DU-6392-01 7 121944301 121944301 G T FEZF1 Missense_Mutation p.S64Y 0.26 tolerated(0.08) possibly_damaging(0.635) TCGA-DU-6392-01 7 122111440 122111440 C T CADPS2 Silent p.V725V 0.14 TCGA-DU-6392-01 7 122342350 122342350 G A RNF148 Missense_Mutation p.A152V 0.06 tolerated(0.39) benign(0.012) TCGA-DU-6392-01 7 122526096 122526096 A G CADPS2 Missense_Mutation p.F99S 0.22 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 12271476 12271476 A G TMEM106B Missense_Mutation p.T234A 0.17 tolerated(0.56) benign(0.016) TCGA-DU-6392-01 7 122811844 122811844 T A SLC13A1 Missense_Mutation p.M115L 0.31 tolerated(1) benign(0.004) TCGA-DU-6392-01 7 123267271 123267271 G A ASB15 Missense_Mutation p.G269R 0.20 deleterious(0.01) possibly_damaging(0.686) TCGA-DU-6392-01 7 123302331 123302331 C T LMOD2 Missense_Mutation p.R231C 0.51 deleterious(0.03) benign(0.003) TCGA-DU-6392-01 7 123332603 123332603 G T WASL Missense_Mutation p.P382H 0.27 tolerated(0.13) unknown(0) TCGA-DU-6392-01 7 124404931 124404931 A C GPR37 Missense_Mutation p.S34A 0.57 tolerated_low_confidence(0.14) benign(0) TCGA-DU-6392-01 7 124493083 124493083 T C POT1 Missense_Mutation p.Y271C 0.10 deleterious(0) probably_damaging(0.935) TCGA-DU-6392-01 7 124503570 124503570 G A POT1 Missense_Mutation p.T127I 0.23 tolerated(0.13) benign(0.025) TCGA-DU-6392-01 7 126173165 126173165 G T GRM8 Silent p.I757I 0.27 TCGA-DU-6392-01 7 126173388 126173388 G T GRM8 Missense_Mutation p.S683Y 0.35 deleterious(0) possibly_damaging(0.879) TCGA-DU-6392-01 7 12668726 12668727 - T SCIN Frame_Shift_Ins p.W401Lfs*8 0.17 TCGA-DU-6392-01 7 12680116 12680116 C T SCIN Silent p.L519L 0.70 TCGA-DU-6392-01 7 127224742 127224742 C T GCC1 Silent p.L165L 0.28 TCGA-DU-6392-01 7 127225066 127225066 C A GCC1 Missense_Mutation p.K57N 0.21 tolerated(0.08) benign(0.087) TCGA-DU-6392-01 7 127229994 127229994 C A ARF5 Intron 0.28 TCGA-DU-6392-01 7 127252041 127252041 C T PAX4 Silent p.G235G 0.25 TCGA-DU-6392-01 7 127255455 127255455 C A PAX4 Missense_Mutation p.K40N 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 7 12727892 12727892 C A ARL4A Missense_Mutation p.L5M 0.09 tolerated(0.22) possibly_damaging(0.483) TCGA-DU-6392-01 7 127326801 127326801 G T SND1 Missense_Mutation p.K71N 0.19 tolerated(0.34) benign(0.038) TCGA-DU-6392-01 7 127342560 127342560 G T SND1 Missense_Mutation p.V221F 0.09 deleterious(0.04) benign(0.203) TCGA-DU-6392-01 7 127569379 127569379 G A SND1 Missense_Mutation p.A556T 0.50 deleterious(0) probably_damaging(0.955) TCGA-DU-6392-01 7 127965879 127965879 C A RBM28 Nonsense_Mutation p.E399* 0.18 TCGA-DU-6392-01 7 128040230 128040230 T C IMPDH1 Missense_Mutation p.T265A 0.31 deleterious(0.03) possibly_damaging(0.851) TCGA-DU-6392-01 7 128049358 128049358 C T IMPDH1 Missense_Mutation p.R80H 0.32 tolerated_low_confidence(0.13) benign(0.034) TCGA-DU-6392-01 7 128119311 128119311 C A METTL2B Missense_Mutation p.P101H 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 128141876 128141876 G A METTL2B Missense_Mutation p.R348H 0.61 tolerated(0.07) benign(0.341) TCGA-DU-6392-01 7 128394464 128394464 G A CALU Intron 0.54 TCGA-DU-6392-01 7 128409143 128409143 C T CALU Silent p.I298I 0.18 TCGA-DU-6392-01 7 128413872 128413872 A G OPN1SW Missense_Mutation p.V253A 0.20 tolerated(0.18) possibly_damaging(0.734) TCGA-DU-6392-01 7 128441482 128441482 G A CCDC136 Missense_Mutation p.A197T 0.44 tolerated(1) benign(0.079) TCGA-DU-6392-01 7 128470777 128470777 C T FLNC Missense_Mutation p.A29V 0.12 deleterious(0) benign(0.134) TCGA-DU-6392-01 7 128488685 128488685 G A FLNC Missense_Mutation p.A1551T 0.14 tolerated(0.57) benign(0.013) TCGA-DU-6392-01 7 128496579 128496579 G T FLNC Missense_Mutation p.G2420V 0.19 deleterious(0) possibly_damaging(0.833) TCGA-DU-6392-01 7 128498253 128498253 G A FLNC Missense_Mutation p.V2658M 0.17 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 128641137 128641137 G A TNPO3 Missense_Mutation p.A283V 0.28 deleterious(0.02) possibly_damaging(0.596) TCGA-DU-6392-01 7 128641247 128641247 C T TNPO3 Silent p.S246S 0.26 TCGA-DU-6392-01 7 128845485 128845485 G A SMO Missense_Mutation p.R261H 0.21 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 7 128846053 128846053 G A SMO Missense_Mutation p.G328D 0.59 deleterious(0) probably_damaging(0.943) TCGA-DU-6392-01 7 129066888 129066888 T G AHCYL2 3'UTR 0.09 TCGA-DU-6392-01 7 129091500 129091500 C A STRIP2 Silent p.A107A 0.24 TCGA-DU-6392-01 7 129103953 129103953 C A STRIP2 Silent p.I540I 0.08 TCGA-DU-6392-01 7 129125492 129125492 G T STRIP2 Missense_Mutation p.S776I 0.26 deleterious(0.04) possibly_damaging(0.507) TCGA-DU-6392-01 7 129357079 129357079 G A NRF1 Silent p.T362T 0.15 TCGA-DU-6392-01 7 129414770 129414770 A G MIR183 RNA 0.59 TCGA-DU-6392-01 7 129474840 129474840 G A UBE2H Silent p.D163D 0.12 TCGA-DU-6392-01 7 129841754 129841754 G A TMEM209 Missense_Mutation p.S170F 0.22 deleterious(0.04) benign(0.255) TCGA-DU-6392-01 7 129909568 129909568 C T CPA2 Silent p.F71F 0.08 TCGA-DU-6392-01 7 130007766 130007766 C T CPA5 Missense_Mutation p.A353V 0.54 deleterious(0.01) probably_damaging(0.925) TCGA-DU-6392-01 7 130008479 130008479 G T CPA5 3'UTR 0.54 TCGA-DU-6392-01 7 130020367 130020367 G A CPA1 Silent p.R2R 0.52 TCGA-DU-6392-01 7 130023239 130023240 - G CPA1 Frame_Shift_Ins p.S167Qfs*2 0.25 TCGA-DU-6392-01 7 130038683 130038683 G A CEP41 3'UTR 0.28 TCGA-DU-6392-01 7 130364093 130364093 A G TSGA13 Missense_Mutation p.L96S 0.22 tolerated(0.18) possibly_damaging(0.765) TCGA-DU-6392-01 7 131073706 131073706 G A MKLN1 Missense_Mutation p.M125I 0.08 tolerated(0.4) benign(0.004) TCGA-DU-6392-01 7 131196042 131196042 C T PODXL Missense_Mutation p.G84D 0.32 tolerated_low_confidence(0.38) benign(0.006) TCGA-DU-6392-01 7 131831449 131831449 G A PLXNA4 Silent p.I1625I 0.30 TCGA-DU-6392-01 7 131859595 131859595 T C PLXNA4 Missense_Mutation p.Y1320C 0.24 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 7 131887409 131887409 G A PLXNA4 Missense_Mutation p.T861I 0.56 tolerated(0.15) possibly_damaging(0.643) TCGA-DU-6392-01 7 132192525 132192525 G A PLXNA4 Silent p.L310L 0.36 TCGA-DU-6392-01 7 133812281 133812281 C A LRGUK Missense_Mutation p.S54Y 0.08 tolerated_low_confidence(0.37) benign(0.001) TCGA-DU-6392-01 7 133881836 133881836 C T LRGUK Silent p.S508S 0.43 TCGA-DU-6392-01 7 134217814 134217814 C T AKR1B10 Missense_Mutation p.T137M 0.25 deleterious(0.01) possibly_damaging(0.694) TCGA-DU-6392-01 7 134618001 134618001 G A CALD1 Missense_Mutation p.E161K 0.29 deleterious(0.05) unknown(0) TCGA-DU-6392-01 7 134618793 134618793 G T CALD1 Nonsense_Mutation p.E425* 0.17 TCGA-DU-6392-01 7 134635185 134635185 C T CALD1 Missense_Mutation p.R619C 0.49 deleterious(0.03) unknown(0) TCGA-DU-6392-01 7 134644788 134644788 G A CALD1 Missense_Mutation p.V709I 0.08 tolerated(0.15) possibly_damaging(0.774) TCGA-DU-6392-01 7 134849717 134849717 C T TMEM140 Missense_Mutation p.A175V 0.50 tolerated(0.18) benign(0.097) TCGA-DU-6392-01 7 134851540 134851540 C T C7orf49 Silent p.S99S 0.57 TCGA-DU-6392-01 7 135082964 135082964 G T CNOT4 Missense_Mutation p.P279H 0.12 deleterious(0) possibly_damaging(0.694) TCGA-DU-6392-01 7 135304414 135304414 C T NUP205 Silent p.L1403L 0.25 TCGA-DU-6392-01 7 135307563 135307563 G A NUP205 Missense_Mutation p.D1457N 0.23 tolerated(0.06) probably_damaging(0.933) TCGA-DU-6392-01 7 135310033 135310033 G A NUP205 Missense_Mutation p.R1534H 0.55 tolerated(0.4) benign(0.003) TCGA-DU-6392-01 7 137569746 137569746 G T CREB3L2 Missense_Mutation p.S422Y 0.50 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 7 137776629 137776629 A C AKR1D1 Missense_Mutation p.K126T 0.09 deleterious(0) probably_damaging(0.913) TCGA-DU-6392-01 7 138588381 138588381 G A KIAA1549 Missense_Mutation p.R1208W 0.55 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 138602434 138602434 C T KIAA1549 Silent p.A646A 0.67 TCGA-DU-6392-01 7 138603454 138603454 C A KIAA1549 Missense_Mutation p.E306D 0.10 deleterious(0.01) possibly_damaging(0.524) TCGA-DU-6392-01 7 138793934 138793934 G A ZC3HAV1 Silent p.R48R 0.35 TCGA-DU-6392-01 7 138872160 138872160 G T TTC26 Missense_Mutation p.Q476H 0.27 tolerated(0.46) benign(0.005) TCGA-DU-6392-01 7 138969078 138969078 C T UBN2 Missense_Mutation p.L1143F 0.17 tolerated_low_confidence(0.1) benign(0.372) TCGA-DU-6392-01 7 138969195 138969195 G A UBN2 Missense_Mutation p.G1182R 0.54 deleterious_low_confidence(0) benign(0.084) TCGA-DU-6392-01 7 139107024 139107024 A C LUC7L2 Missense_Mutation p.S439R 0.21 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 7 139285180 139285180 C T HIPK2 Silent p.Q806Q 0.28 TCGA-DU-6392-01 7 139288934 139288934 A G HIPK2 Silent p.L716L 0.06 TCGA-DU-6392-01 7 139661747 139661747 G T TBXAS1 Silent p.L330L 0.19 TCGA-DU-6392-01 7 139724326 139724326 G T PARP12 3'UTR 0.64 TCGA-DU-6392-01 7 139734114 139734114 G T PARP12 Missense_Mutation p.L448M 0.66 deleterious(0.01) probably_damaging(0.939) TCGA-DU-6392-01 7 139796538 139796538 C A KDM7A Nonsense_Mutation p.E731* 0.12 TCGA-DU-6392-01 7 140051264 140051264 C T SLC37A3 Intron 0.62 TCGA-DU-6392-01 7 140125904 140125904 T C RAB19 Missense_Mutation p.V203A 0.08 deleterious(0.03) benign(0.405) TCGA-DU-6392-01 7 140244525 140244525 G A DENND2A Silent p.H740H 0.50 TCGA-DU-6392-01 7 14027793 14027793 C T ETV1 Silent p.Q17Q 0.42 TCGA-DU-6392-01 7 140287481 140287481 C T DENND2A Silent p.S365S 0.17 TCGA-DU-6392-01 7 140434336 140434336 A G BRAF 3'UTR 0.05 TCGA-DU-6392-01 7 140500184 140500184 C T BRAF Missense_Mutation p.A320T 0.55 tolerated(0.46) benign(0) TCGA-DU-6392-01 7 140508788 140508788 G T BRAF Missense_Mutation p.A171E 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-DU-6392-01 7 141385376 141385376 G A KIAA1147 Silent p.S143S 0.56 TCGA-DU-6392-01 7 141420793 141420793 G A WEE2 Missense_Mutation p.V273I 0.53 deleterious(0.03) benign(0.219) TCGA-DU-6392-01 7 141464473 141464473 G T TAS2R3 Missense_Mutation p.R172I 0.11 deleterious(0) possibly_damaging(0.851) TCGA-DU-6392-01 7 141490585 141490585 G A TAS2R5 Missense_Mutation p.V142I 0.54 tolerated(0.44) benign(0.05) TCGA-DU-6392-01 7 141759732 141759732 A C MGAM Missense_Mutation p.K1342T 0.58 tolerated(0.14) benign(0.222) TCGA-DU-6392-01 7 141952105 141952105 A C PRSS58 Missense_Mutation p.V221G 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 7 141952370 141952370 G A PRSS58 Silent p.R166R 0.12 TCGA-DU-6392-01 7 142013476 142013476 G A TRBV4-1 Missense_Mutation p.A111T 0.49 deleterious(0.03) possibly_damaging(0.585) TCGA-DU-6392-01 7 142021229 142021229 G A TRBV5-1 Missense_Mutation p.S70N 0.67 tolerated(1) benign(0.002) TCGA-DU-6392-01 7 142028398 142028398 G T TRBV6-1 Missense_Mutation p.Q44H 0.06 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 142168939 142168939 A G TRBV5-4 5'UTR 0.58 TCGA-DU-6392-01 7 142180690 142180690 C A TRBV6-5 Missense_Mutation p.D57Y 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 142326544 142326544 G A TRBV19 5'UTR 0.29 TCGA-DU-6392-01 7 142460314 142460314 G A PRSS1 Missense_Mutation p.A163T 0.14 tolerated(0.09) benign(0.055) TCGA-DU-6392-01 7 142569693 142569693 G A TRPV6 Nonsense_Mutation p.Q649* 0.24 TCGA-DU-6392-01 7 142612660 142612660 G T TRPV5 Missense_Mutation p.L401I 0.29 tolerated(0.28) benign(0.12) TCGA-DU-6392-01 7 142640600 142640600 G A KEL Missense_Mutation p.P559L 0.52 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 7 142749947 142749947 C T OR6V1 Silent p.D170D 0.49 TCGA-DU-6392-01 7 143028657 143028657 C T CLCN1 Missense_Mutation p.L360F 0.62 tolerated(1) benign(0.001) TCGA-DU-6392-01 7 143039110 143039110 G A CLCN1 Silent p.L557L 0.24 TCGA-DU-6392-01 7 143088766 143088766 G A EPHA1 Silent p.H933H 0.09 TCGA-DU-6392-01 7 143175323 143175323 C A TAS2R41 Missense_Mutation p.L120M 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-DU-6392-01 7 143175406 143175407 - T TAS2R41 Frame_Shift_Ins p.W150Lfs*13 0.26 TCGA-DU-6392-01 7 143807592 143807592 G A OR2A2 Missense_Mutation p.R306K 0.54 tolerated(1) benign(0.008) TCGA-DU-6392-01 7 143882640 143882640 C A CTAGE4 Missense_Mutation p.L682I 0.10 deleterious(0.04) benign(0.331) TCGA-DU-6392-01 7 144060474 144060474 G A ARHGEF5 Missense_Mutation p.A238T 0.34 tolerated(0.57) benign(0.01) TCGA-DU-6392-01 7 144097329 144097329 C A NOBOX Missense_Mutation p.Q307H 0.13 deleterious(0.04) possibly_damaging(0.532) TCGA-DU-6392-01 7 144288549 144288549 G A TPK1 Silent p.I156I 0.59 TCGA-DU-6392-01 7 14722263 14722263 C T DGKB Missense_Mutation p.C317Y 0.30 deleterious(0.01) probably_damaging(0.934) TCGA-DU-6392-01 7 147336303 147336303 C T CNTNAP2 Missense_Mutation p.S668F 0.58 deleterious(0) possibly_damaging(0.897) TCGA-DU-6392-01 7 14797357 14797357 C T DGKB Splice_Site p.X24_splice 0.23 TCGA-DU-6392-01 7 148080782 148080782 C A CNTNAP2 Missense_Mutation p.P1173T 0.30 tolerated(0.4) benign(0.344) TCGA-DU-6392-01 7 148506461 148506461 C T EZH2 Missense_Mutation p.R684H 0.23 tolerated(0.05) benign(0.278) TCGA-DU-6392-01 7 148768026 148768026 C T ZNF786 Missense_Mutation p.R613H 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 7 148768624 148768624 C T ZNF786 Missense_Mutation p.V414I 0.39 deleterious(0.03) benign(0.059) TCGA-DU-6392-01 7 148809367 148809367 C A ZNF425 Missense_Mutation p.D56Y 0.47 deleterious(0.01) benign(0.396) TCGA-DU-6392-01 7 148876569 148876569 C T ZNF398 Silent p.G535G 0.27 TCGA-DU-6392-01 7 148909549 148909549 C T ZNF282 Missense_Mutation p.T351M 0.18 deleterious(0.04) probably_damaging(0.974) TCGA-DU-6392-01 7 148947529 148947529 C T ZNF212 Nonsense_Mutation p.Q102* 0.11 TCGA-DU-6392-01 7 149129626 149129626 G A ZNF777 Silent p.C579C 0.43 TCGA-DU-6392-01 7 149317059 149317059 C T ZNF767 RNA 0.13 TCGA-DU-6392-01 7 149479958 149479958 G T SSPO RNA 0.18 TCGA-DU-6392-01 7 149485905 149485905 C T SSPO RNA 0.18 TCGA-DU-6392-01 7 149489043 149489043 G A SSPO RNA 0.35 TCGA-DU-6392-01 7 149500075 149500075 C T SSPO RNA 0.27 TCGA-DU-6392-01 7 149508800 149508800 C T SSPO RNA 0.56 TCGA-DU-6392-01 7 149509032 149509032 G A SSPO RNA 0.18 TCGA-DU-6392-01 7 149519666 149519666 C T SSPO RNA 0.68 TCGA-DU-6392-01 7 150027713 150027713 G A ZBED6CL Missense_Mutation p.A74T 0.30 deleterious(0) probably_damaging(0.951) TCGA-DU-6392-01 7 150094418 150094418 C T ZNF775 Silent p.C283C 0.13 TCGA-DU-6392-01 7 150174255 150174255 T C GIMAP8 Missense_Mutation p.L462P 0.09 tolerated(0.93) benign(0.001) TCGA-DU-6392-01 7 150174764 150174764 G A GIMAP8 Missense_Mutation p.G632R 0.24 tolerated(0.25) benign(0.11) TCGA-DU-6392-01 7 150269743 150269743 C T GIMAP4 Silent p.G195G 0.25 TCGA-DU-6392-01 7 150270110 150270110 G A GIMAP4 Missense_Mutation p.A318T 0.32 tolerated(0.17) benign(0.111) TCGA-DU-6392-01 7 150327221 150327221 C A GIMAP6 Nonsense_Mutation p.E4* 0.19 TCGA-DU-6392-01 7 150390452 150390452 T C GIMAP2 3'UTR 0.23 TCGA-DU-6392-01 7 150417359 150417359 C T GIMAP1 Silent p.S89S 0.24 TCGA-DU-6392-01 7 150417510 150417510 G A GIMAP1 Missense_Mutation p.G140R 0.50 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 150439967 150439967 C T GIMAP5 Missense_Mutation p.A247V 0.53 deleterious(0.04) benign(0.246) TCGA-DU-6392-01 7 150490258 150490258 G A TMEM176B Missense_Mutation p.T173I 0.51 deleterious(0.01) probably_damaging(0.926) TCGA-DU-6392-01 7 150490279 150490279 C T TMEM176B Missense_Mutation p.R166H 0.53 tolerated(0.56) benign(0.006) TCGA-DU-6392-01 7 150656821 150656821 C A KCNH2 Missense_Mutation p.S104I 0.22 deleterious(0.04) benign(0.034) TCGA-DU-6392-01 7 150698337 150698337 G A NOS3 Missense_Mutation p.V418M 0.57 tolerated(0.48) probably_damaging(0.998) TCGA-DU-6392-01 7 150706122 150706122 C A NOS3 Silent p.A739A 0.53 TCGA-DU-6392-01 7 150710953 150710953 A G NOS3 Missense_Mutation p.T1133A 0.38 tolerated(0.77) benign(0.001) TCGA-DU-6392-01 7 150711138 150711138 C T NOS3 Missense_Mutation p.R1165C 0.46 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 7 150713794 150713794 C T ATG9B Missense_Mutation p.R801Q 0.57 tolerated(0.23) benign(0.045) TCGA-DU-6392-01 7 150714129 150714129 C T ATG9B Silent p.S761S 0.33 TCGA-DU-6392-01 7 150714325 150714325 G T ATG9B Missense_Mutation p.S696Y 0.48 tolerated(0.63) possibly_damaging(0.603) TCGA-DU-6392-01 7 150739132 150739132 G A ABCB8 Missense_Mutation p.A568T 0.27 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 7 150746182 150746182 C A ASIC3 Missense_Mutation p.F70L 0.23 deleterious(0.03) benign(0.298) TCGA-DU-6392-01 7 150772400 150772400 C A SLC4A2 Missense_Mutation p.L1036M 0.17 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 150774371 150774371 G A FASTK Intron 0.13 TCGA-DU-6392-01 7 150840969 150840969 G A AGAP3 Missense_Mutation p.R892K 0.60 tolerated_low_confidence(0.17) benign(0.21) TCGA-DU-6392-01 7 150921997 150921997 C T ABCF2 Missense_Mutation p.A78T 0.21 tolerated(0.36) benign(0.113) TCGA-DU-6392-01 7 150935111 150935111 C T CHPF2 Missense_Mutation p.R555W 0.29 deleterious(0) benign(0.362) TCGA-DU-6392-01 7 150972252 150972252 C A SMARCD3 5'UTR 0.17 TCGA-DU-6392-01 7 151065934 151065934 C T NUB1 Silent p.N427N 0.27 TCGA-DU-6392-01 7 151133382 151133382 G A CRYGN Silent p.F100F 0.28 TCGA-DU-6392-01 7 151807673 151807673 A G GALNT11 Silent p.G341G 0.56 TCGA-DU-6392-01 7 1518100 1518100 C T INTS1 Missense_Mutation p.R1511H 0.69 tolerated(0.35) benign(0.001) TCGA-DU-6392-01 7 151818938 151818938 C T GALNT11 3'UTR 0.31 TCGA-DU-6392-01 7 151859837 151859837 T C KMT2C Missense_Mutation p.K3609E 0.06 probably_damaging(0.998) TCGA-DU-6392-01 7 151873659 151873659 G A KMT2C Missense_Mutation p.P2960L 0.60 benign(0.256) TCGA-DU-6392-01 7 151873923 151873923 G T KMT2C Missense_Mutation p.P2872H 0.18 possibly_damaging(0.572) TCGA-DU-6392-01 7 151878436 151878436 G A KMT2C Missense_Mutation p.T2170I 0.29 possibly_damaging(0.461) TCGA-DU-6392-01 7 151917719 151917719 T G KMT2C Missense_Mutation p.K1201Q 0.47 probably_damaging(0.98) TCGA-DU-6392-01 7 152012407 152012407 A G KMT2C Missense_Mutation p.F136L 0.24 benign(0.05) TCGA-DU-6392-01 7 152346195 152346195 G A XRCC2 Silent p.H125H 0.57 TCGA-DU-6392-01 7 152357857 152357857 C T XRCC2 Missense_Mutation p.R17Q 0.40 deleterious(0.01) benign(0.341) TCGA-DU-6392-01 7 152517446 152517446 G A ACTR3B Silent p.T201T 0.12 TCGA-DU-6392-01 7 154143357 154143357 T C DPP6 Missense_Mutation p.L101P 0.52 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 154172024 154172024 C T DPP6 Missense_Mutation p.A120V 0.18 tolerated(0.41) benign(0.002) TCGA-DU-6392-01 7 154767645 154767645 G A PAXIP1 Missense_Mutation p.R279C 0.39 deleterious_low_confidence(0) benign(0.235) TCGA-DU-6392-01 7 154863181 154863181 A G HTR5A Missense_Mutation p.E191G 0.17 tolerated(0.09) benign(0.219) TCGA-DU-6392-01 7 154863210 154863210 G A HTR5A Missense_Mutation p.A201T 0.23 tolerated(1) benign(0.004) TCGA-DU-6392-01 7 155301617 155301617 G A CNPY1 Missense_Mutation p.S39F 0.58 deleterious(0.02) probably_damaging(0.987) TCGA-DU-6392-01 7 156468554 156468554 G A RNF32 Silent p.V283V 0.26 TCGA-DU-6392-01 7 156469001 156469001 G A RNF32 Intron 0.69 TCGA-DU-6392-01 7 156549115 156549115 C A LMBR1 Missense_Mutation p.E243D 0.18 deleterious(0) benign(0.422) TCGA-DU-6392-01 7 156555833 156555833 A G LMBR1 Silent p.C196C 0.08 TCGA-DU-6392-01 7 156743262 156743262 A C NOM1 Missense_Mutation p.E277D 0.56 tolerated(0.45) benign(0) TCGA-DU-6392-01 7 156994433 156994433 C A UBE3C Silent p.A450A 0.23 TCGA-DU-6392-01 7 157041083 157041083 G A UBE3C Missense_Mutation p.V835M 0.28 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 7 157370773 157370773 G A PTPRN2 Silent p.G852G 0.56 TCGA-DU-6392-01 7 157370803 157370803 G A PTPRN2 Silent p.I842I 0.57 TCGA-DU-6392-01 7 158455046 158455046 G A NCAPG2 Missense_Mutation p.T610I 0.09 tolerated(0.26) benign(0.049) TCGA-DU-6392-01 7 158716267 158716267 G A WDR60 Silent p.T700T 0.23 TCGA-DU-6392-01 7 16642112 16642112 C T ANKMY2 Missense_Mutation p.C345Y 0.47 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 16650315 16650315 T C ANKMY2 Missense_Mutation p.D202G 0.08 tolerated(0.06) benign(0.029) TCGA-DU-6392-01 7 16666737 16666737 G A ANKMY2 Nonsense_Mutation p.R67* 0.24 TCGA-DU-6392-01 7 16745753 16745753 C T BZW2 3'UTR 0.32 TCGA-DU-6392-01 7 17379003 17379003 G T AHR Missense_Mutation p.Q518H 0.20 deleterious(0.02) benign(0.03) TCGA-DU-6392-01 7 18625144 18625144 A C HDAC9 Missense_Mutation p.K88T 0.13 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 195656 195656 C T FAM20C Silent p.Y236Y 0.66 TCGA-DU-6392-01 7 20199790 20199790 T G MACC1 Missense_Mutation p.N65T 0.56 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 7 20682994 20682994 A C ABCB5 Missense_Mutation p.T168P 0.12 deleterious(0) probably_damaging(0.955) TCGA-DU-6392-01 7 20689654 20689654 G T ABCB5 Missense_Mutation p.G406C 0.26 deleterious(0.01) benign(0.2) TCGA-DU-6392-01 7 20778740 20778740 G A ABCB5 Missense_Mutation p.R1001H 0.55 tolerated(0.11) benign(0) TCGA-DU-6392-01 7 20824833 20824833 G A SP8 Silent p.H201H 0.21 TCGA-DU-6392-01 7 21516748 21516748 C A SP4 Missense_Mutation p.P577H 0.08 deleterious(0) possibly_damaging(0.533) TCGA-DU-6392-01 7 21631042 21631042 G T DNAH11 Missense_Mutation p.Q838H 0.53 benign(0.333) TCGA-DU-6392-01 7 21654888 21654888 C T DNAH11 Nonsense_Mutation p.R1337* 0.43 TCGA-DU-6392-01 7 21730484 21730484 T C DNAH11 Missense_Mutation p.L2016P 0.25 probably_damaging(0.994) TCGA-DU-6392-01 7 21789968 21789968 C T DNAH11 Nonsense_Mutation p.R2983* 0.21 TCGA-DU-6392-01 7 21946038 21946038 G A CDCA7L Nonsense_Mutation p.Q264* 0.23 TCGA-DU-6392-01 7 22532333 22532333 C T STEAP1B Missense_Mutation p.E205K 0.23 tolerated(0.05) probably_damaging(0.913) TCGA-DU-6392-01 7 22533445 22533445 G A STEAP1B Missense_Mutation p.T32M 0.49 tolerated_low_confidence(0.27) benign(0.022) TCGA-DU-6392-01 7 23205476 23205476 C T KLHL7 Silent p.L366L 0.21 TCGA-DU-6392-01 7 23299713 23299713 C T GPNMB Missense_Mutation p.A219V 0.41 tolerated(0.12) benign(0.009) TCGA-DU-6392-01 7 23306199 23306199 G T GPNMB Missense_Mutation p.R373I 0.09 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 7 23351809 23351809 G T IGF2BP3 3'UTR 0.42 TCGA-DU-6392-01 7 23351909 23351909 C T IGF2BP3 3'UTR 0.57 TCGA-DU-6392-01 7 23545428 23545428 G A TRA2A Nonsense_Mutation p.R259* 0.57 TCGA-DU-6392-01 7 23545848 23545848 C A TRA2A Missense_Mutation p.G227C 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-DU-6392-01 7 23547109 23547109 G A TRA2A Missense_Mutation p.R191W 0.28 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 23808768 23808768 T C STK31 Missense_Mutation p.V524A 0.30 tolerated(1) benign(0.002) TCGA-DU-6392-01 7 23809314 23809314 T C STK31 Missense_Mutation p.I551T 0.05 deleterious(0.02) benign(0.211) TCGA-DU-6392-01 7 24324914 24324914 C T NPY Missense_Mutation p.L19F 0.47 tolerated(0.05) probably_damaging(0.986) TCGA-DU-6392-01 7 24727059 24727059 C T MPP6 Silent p.D483D 0.59 TCGA-DU-6392-01 7 24749948 24749948 C T DFNA5 Missense_Mutation p.V253I 0.64 tolerated(0.38) benign(0.01) TCGA-DU-6392-01 7 24839811 24839811 G A OSBPL3 Silent p.V885V 0.12 TCGA-DU-6392-01 7 25163588 25163588 C T CYCS Missense_Mutation p.A51T 0.24 deleterious(0.03) benign(0.004) TCGA-DU-6392-01 7 25176355 25176355 G A C7orf31 Nonsense_Mutation p.R337* 0.22 TCGA-DU-6392-01 7 2578059 2578059 C T BRAT1 Missense_Mutation p.A704T 0.17 tolerated(0.07) possibly_damaging(0.73) TCGA-DU-6392-01 7 2581459 2581459 C T BRAT1 Missense_Mutation p.G343R 0.36 tolerated(0.49) benign(0.051) TCGA-DU-6392-01 7 26224454 26224454 A G NFE2L3 Missense_Mutation p.D379G 0.07 deleterious(0.02) possibly_damaging(0.899) TCGA-DU-6392-01 7 26404108 26404108 C T SNX10 Intron 0.59 TCGA-DU-6392-01 7 27140382 27140382 G A HOXA2 Missense_Mutation p.T365I 0.19 deleterious(0) probably_damaging(0.921) TCGA-DU-6392-01 7 27149775 27149775 G A HOXA3 Missense_Mutation p.S162F 0.23 deleterious(0) possibly_damaging(0.485) TCGA-DU-6392-01 7 27194841 27194841 C T HOXA7 Missense_Mutation p.G127E 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 7 27203181 27203181 C A HOXA9 3'UTR 0.25 TCGA-DU-6392-01 7 27203268 27203268 C A HOXA9 Missense_Mutation p.R258M 0.09 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 7 27565877 27565877 A T HIBADH Missense_Mutation p.F323I 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 27788186 27788186 G A TAX1BP1 Missense_Mutation p.A15T 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 28452506 28452506 A C CREB5 5'UTR 0.28 TCGA-DU-6392-01 7 29552185 29552185 C T CHN2 Missense_Mutation p.T414I 0.22 tolerated(0.07) possibly_damaging(0.571) TCGA-DU-6392-01 7 29915574 29915574 C T WIPF3 Silent p.I73I 0.58 TCGA-DU-6392-01 7 30363339 30363339 G A ZNRF2 Missense_Mutation p.R184Q 0.23 deleterious(0) benign(0.194) TCGA-DU-6392-01 7 30402073 30402073 G A ZNRF2 Splice_Site 0.27 TCGA-DU-6392-01 7 30491398 30491398 C A NOD1 Missense_Mutation p.Q545H 0.09 tolerated(0.17) benign(0.002) TCGA-DU-6392-01 7 30673355 30673355 C A GARS Missense_Mutation p.S700Y 0.31 deleterious(0.01) possibly_damaging(0.905) TCGA-DU-6392-01 7 30876364 30876364 A G FAM188B Missense_Mutation p.D408G 0.27 deleterious(0.01) benign(0.411) TCGA-DU-6392-01 7 30951901 30951901 G A AQP1 Missense_Mutation p.R126H 0.21 deleterious(0.02) benign(0.288) TCGA-DU-6392-01 7 31009572 31009572 C T GHRHR Missense_Mutation p.A120V 0.07 tolerated(0.28) benign(0.004) TCGA-DU-6392-01 7 31011684 31011684 G A GHRHR Missense_Mutation p.D191N 0.47 tolerated(0.43) benign(0.013) TCGA-DU-6392-01 7 31018826 31018826 C T GHRHR Silent p.R413R 0.08 TCGA-DU-6392-01 7 31117681 31117681 C A ADCYAP1R1 Missense_Mutation p.P78H 0.12 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 7 31592682 31592682 G A CCDC129 Missense_Mutation p.G41D 0.54 tolerated(0.08) benign(0.379) TCGA-DU-6392-01 7 31617984 31617984 C T CCDC129 Missense_Mutation p.T395I 0.44 tolerated(0.06) benign(0.039) TCGA-DU-6392-01 7 31682426 31682426 C T CCDC129 Missense_Mutation p.A507V 0.26 tolerated(1) benign(0.002) TCGA-DU-6392-01 7 31682533 31682533 C A CCDC129 Missense_Mutation p.L543M 0.59 tolerated(0.24) benign(0.341) TCGA-DU-6392-01 7 31877483 31877483 C T PDE1C Splice_Site p.X421_splice 0.26 TCGA-DU-6392-01 7 32209452 32209452 C T PDE1C Missense_Mutation p.A85T 0.28 tolerated(0.35) probably_damaging(0.989) TCGA-DU-6392-01 7 32615649 32615649 C T AVL9 Silent p.S551S 0.25 TCGA-DU-6392-01 7 33044969 33044969 G A FKBP9 3'UTR 0.51 TCGA-DU-6392-01 7 33380508 33380508 G A BBS9 Splice_Site p.X400_splice 0.56 TCGA-DU-6392-01 7 34125702 34125702 C T BMPER Silent p.Y581Y 0.33 TCGA-DU-6392-01 7 34888157 34888157 C T NPSR1 Missense_Mutation p.P303S 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-DU-6392-01 7 34985313 34985313 A C DPY19L1 Missense_Mutation p.W431G 0.08 tolerated(0.29) benign(0) TCGA-DU-6392-01 7 36194070 36194070 C T EEPD1 Missense_Mutation p.T46M 0.23 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 7 36366345 36366345 C T KIAA0895 3'UTR 0.23 TCGA-DU-6392-01 7 36450152 36450152 C T ANLN Missense_Mutation p.R376C 0.65 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 7 36713578 36713578 A G AOAH Missense_Mutation p.I87T 0.10 deleterious(0.01) benign(0.155) TCGA-DU-6392-01 7 36927174 36927174 G A ELMO1 Missense_Mutation p.R569W 0.10 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 7 37780630 37780630 G A GPR141 Missense_Mutation p.R212H 0.24 tolerated(0.27) benign(0.04) TCGA-DU-6392-01 7 37960397 37960397 G A EPDR1 5'UTR 0.52 TCGA-DU-6392-01 7 38305111 38305111 G A TRGC1 Missense_Mutation p.S57F 0.53 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 7 38857475 38857475 G T VPS41 Missense_Mutation p.A131D 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 38902182 38902182 A G VPS41 Missense_Mutation p.L70P 0.10 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 7 40027399 40027399 G A CDK13 Silent p.A471A 0.62 TCGA-DU-6392-01 7 40133900 40133900 C T CDK13 Missense_Mutation p.T1287I 0.21 tolerated_low_confidence(0.05) benign(0.015) TCGA-DU-6392-01 7 4089042 4089042 C A SDK1 Missense_Mutation p.L889M 0.32 tolerated(0.22) benign(0.158) TCGA-DU-6392-01 7 42004149 42004149 C T GLI3 Missense_Mutation p.A1508T 0.49 tolerated(0.12) benign(0.16) TCGA-DU-6392-01 7 42004302 42004302 C A GLI3 Missense_Mutation p.A1457S 0.26 tolerated(0.15) benign(0.004) TCGA-DU-6392-01 7 42005518 42005518 C T GLI3 Silent p.R1051R 0.25 TCGA-DU-6392-01 7 42065984 42065984 G A GLI3 Silent p.S352S 0.28 TCGA-DU-6392-01 7 4260953 4260953 C T SDK1 Silent p.G1928G 0.40 TCGA-DU-6392-01 7 42950214 42950214 C A C7orf25 Missense_Mutation p.D154Y 0.07 deleterious(0) probably_damaging(0.956) TCGA-DU-6392-01 7 42964361 42964361 T C PSMA2 Missense_Mutation p.Q96R 0.18 tolerated(0.53) benign(0.185) TCGA-DU-6392-01 7 43483896 43483896 C T HECW1 Silent p.S375S 0.24 TCGA-DU-6392-01 7 43508613 43508613 A T HECW1 Missense_Mutation p.N1003I 0.66 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 7 43519258 43519258 G A HECW1 Missense_Mutation p.R1050Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 43664326 43664326 C A STK17A Missense_Mutation p.T377N 0.53 tolerated(0.07) probably_damaging(0.961) TCGA-DU-6392-01 7 43846772 43846772 C T BLVRA Missense_Mutation p.R277C 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-DU-6392-01 7 43906295 43906295 G A URGCP-MRPS24 3'UTR 0.36 TCGA-DU-6392-01 7 43916585 43916585 G T URGCP Missense_Mutation p.S826Y 0.58 deleterious(0) possibly_damaging(0.718) TCGA-DU-6392-01 7 43917062 43917062 G A URGCP Missense_Mutation p.T667M 0.63 deleterious(0) probably_damaging(0.941) TCGA-DU-6392-01 7 43917891 43917891 G A URGCP Missense_Mutation p.R391C 0.21 tolerated(0.05) probably_damaging(0.999) TCGA-DU-6392-01 7 43982631 43982631 G T UBE2D4 Splice_Site p.X66_splice 0.52 TCGA-DU-6392-01 7 44044819 44044819 C T SPDYE1 Silent p.L209L 0.26 TCGA-DU-6392-01 7 44073779 44073779 C A RASA4CP RNA 0.18 TCGA-DU-6392-01 7 44096431 44096431 G A DBNL Missense_Mutation p.A135T 0.32 deleterious(0.03) probably_damaging(0.919) TCGA-DU-6392-01 7 44113534 44113534 T C POLM Missense_Mutation p.S388G 0.28 deleterious(0) benign(0.298) TCGA-DU-6392-01 7 44113546 44113546 C T POLM Missense_Mutation p.A384T 0.50 tolerated(0.55) benign(0.002) TCGA-DU-6392-01 7 44154395 44154395 G T POLD2 Missense_Mutation p.L467M 0.17 deleterious_low_confidence(0.05) unknown(0) TCGA-DU-6392-01 7 44156081 44156081 G A POLD2 Missense_Mutation p.A270V 0.44 deleterious(0.04) probably_damaging(0.991) TCGA-DU-6392-01 7 44189415 44189415 G A GCK Missense_Mutation p.A209V 0.21 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 44572960 44572960 G C NPC1L1 Intron 0.54 TCGA-DU-6392-01 7 44612025 44612025 C T DDX56 Missense_Mutation p.R189Q 0.31 deleterious(0.05) benign(0.108) TCGA-DU-6392-01 7 44737282 44737282 G A OGDH Silent p.T753T 0.08 TCGA-DU-6392-01 7 44737297 44737297 C T OGDH Silent p.I758I 0.28 TCGA-DU-6392-01 7 44739829 44739829 C T OGDH Silent p.H840H 0.07 TCGA-DU-6392-01 7 44746903 44746903 C T OGDH Silent p.C904C 0.47 TCGA-DU-6392-01 7 44747186 44747186 G A OGDH Silent p.S934S 0.55 TCGA-DU-6392-01 7 44802511 44802511 G A ZMIZ2 Missense_Mutation p.R543H 0.20 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 45005867 45005867 G T MYO1G Silent p.T654T 0.18 TCGA-DU-6392-01 7 45719377 45719377 C T ADCY1 Silent p.H656H 0.55 TCGA-DU-6392-01 7 45724577 45724577 G A ADCY1 Splice_Site p.X662_splice 0.09 TCGA-DU-6392-01 7 47342575 47342575 C T TNS3 Missense_Mutation p.A1144T 0.23 tolerated(0.39) benign(0.001) TCGA-DU-6392-01 7 47847887 47847887 G A PKD1L1 Silent p.C2595C 0.09 TCGA-DU-6392-01 7 47851554 47851554 G T PKD1L1 Missense_Mutation p.P2481H 0.77 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 7 47869717 47869717 C T PKD1L1 Missense_Mutation p.G2160D 0.32 tolerated(0.63) benign(0.01) TCGA-DU-6392-01 7 47894786 47894786 G A PKD1L1 Silent p.P1556P 0.50 TCGA-DU-6392-01 7 48139382 48139382 A C UPP1 Missense_Mutation p.K54Q 0.06 deleterious(0.02) possibly_damaging(0.788) TCGA-DU-6392-01 7 48280594 48280594 C T ABCA13 Missense_Mutation p.T398I 0.21 benign(0.007) TCGA-DU-6392-01 7 48312581 48312581 C T ABCA13 Silent p.H1106H 0.38 TCGA-DU-6392-01 7 48313911 48313911 C T ABCA13 Silent p.L1550L 0.57 TCGA-DU-6392-01 7 48314705 48314705 G T ABCA13 Missense_Mutation p.E1814D 0.13 benign(0.092) TCGA-DU-6392-01 7 48315032 48315032 G T ABCA13 Missense_Mutation p.K1923N 0.32 probably_damaging(0.935) TCGA-DU-6392-01 7 4855923 4855923 C T RADIL Silent p.S634S 0.77 TCGA-DU-6392-01 7 48684218 48684218 G T ABCA13 Missense_Mutation p.Q4983H 0.62 probably_damaging(0.991) TCGA-DU-6392-01 7 50513423 50513423 T G FIGNL1 Missense_Mutation p.K521N 0.63 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 50530956 50530956 G A DDC Silent p.A472A 0.19 TCGA-DU-6392-01 7 50530983 50530983 G T DDC Silent p.A463A 0.54 TCGA-DU-6392-01 7 5104164 5104164 T C RBAK Silent p.H359H 0.50 TCGA-DU-6392-01 7 51095935 51095935 T C COBL Missense_Mutation p.E953G 0.18 tolerated(0.18) benign(0.079) TCGA-DU-6392-01 7 51096641 51096641 G A COBL Nonsense_Mutation p.R718* 0.37 TCGA-DU-6392-01 7 51152918 51152918 A G COBL Silent p.S347S 0.19 TCGA-DU-6392-01 7 51258649 51258649 C T COBL Missense_Mutation p.V195M 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 5232791 5232791 C T WIPI2 Silent p.R39R 0.06 TCGA-DU-6392-01 7 53103889 53103889 G T POM121L12 Silent p.R175R 0.13 TCGA-DU-6392-01 7 5327557 5327557 C T SLC29A4 Missense_Mutation p.A37V 0.15 tolerated(0.25) benign(0) TCGA-DU-6392-01 7 5330479 5330479 C T SLC29A4 Missense_Mutation p.H96Y 0.11 deleterious(0) probably_damaging(0.953) TCGA-DU-6392-01 7 5338707 5338707 G A SLC29A4 Missense_Mutation p.R324H 0.72 tolerated(0.1) probably_damaging(0.932) TCGA-DU-6392-01 7 5347924 5347924 G A TNRC18 Missense_Mutation p.S2907L 0.70 unknown(0) TCGA-DU-6392-01 7 5348995 5348995 C T TNRC18 Missense_Mutation p.R2798H 0.28 unknown(0) TCGA-DU-6392-01 7 5399145 5399145 T G TNRC18 Silent p.R1573R 0.59 TCGA-DU-6392-01 7 54612359 54612359 C T VSTM2A Nonsense_Mutation p.Q42* 0.16 TCGA-DU-6392-01 7 55225429 55225429 C T EGFR Silent p.R427R 0.25 TCGA-DU-6392-01 7 55233088 55233088 C T EGFR Missense_Mutation p.A613V 0.17 tolerated(0.19) benign(0.009) TCGA-DU-6392-01 7 55238146 55238146 C T EGFR Intron 0.20 TCGA-DU-6392-01 7 5529774 5529774 C T FBXL18 Intron 0.25 TCGA-DU-6392-01 7 5540990 5540990 C T FBXL18 Missense_Mutation p.G304S 0.37 tolerated(0.23) probably_damaging(1) TCGA-DU-6392-01 7 5568063 5568063 G A ACTB Silent p.C217C 0.63 TCGA-DU-6392-01 7 55910781 55910781 C T SEPT14 Missense_Mutation p.A138T 0.37 tolerated(0.07) possibly_damaging(0.886) TCGA-DU-6392-01 7 55914312 55914312 G A SEPT14 Missense_Mutation p.R25C 0.33 deleterious(0.01) benign(0.064) TCGA-DU-6392-01 7 56127304 56127304 C T CCT6A Missense_Mutation p.H346Y 0.29 tolerated(0.88) benign(0.011) TCGA-DU-6392-01 7 56141896 56141896 G T SUMF2 Missense_Mutation p.K142N 0.06 tolerated(0.11) benign(0.065) TCGA-DU-6392-01 7 56145875 56145875 C T SUMF2 Silent p.N243N 0.42 TCGA-DU-6392-01 7 56151049 56151049 G T PHKG1 Missense_Mutation p.L189I 0.28 deleterious(0) probably_damaging(0.91) TCGA-DU-6392-01 7 56171941 56171941 G A CHCHD2 Missense_Mutation p.A93V 0.24 tolerated(0.12) benign(0.195) TCGA-DU-6392-01 7 56171950 56171950 G A CHCHD2 Missense_Mutation p.A90V 0.25 deleterious(0.04) benign(0.127) TCGA-DU-6392-01 7 5643168 5643168 G A FSCN1 Missense_Mutation p.R344H 0.16 tolerated(0.06) probably_damaging(0.969) TCGA-DU-6392-01 7 5645040 5645040 G A FSCN1 Missense_Mutation p.D473N 0.67 tolerated(0.07) probably_damaging(0.999) TCGA-DU-6392-01 7 5983011 5983011 C T RSPH10B Missense_Mutation p.A568T 0.35 tolerated(1) benign(0.006) TCGA-DU-6392-01 7 6042121 6042121 G A PMS2 Missense_Mutation p.P167L 0.49 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 6043351 6043351 C T PMS2 Missense_Mutation p.G108E 0.27 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 6054859 6054859 T C AIMP2 Missense_Mutation p.V73A 0.07 deleterious(0) probably_damaging(0.91) TCGA-DU-6392-01 7 6078266 6078266 G A EIF2AK1 Silent p.L386L 0.28 TCGA-DU-6392-01 7 6426844 6426844 G A RAC1 Missense_Mutation p.A13T 0.63 tolerated(0.06) possibly_damaging(0.675) TCGA-DU-6392-01 7 64441793 64441793 C T ZNF117 Silent p.K2K 0.55 TCGA-DU-6392-01 7 64528880 64528880 C A SNORA22 3'Flank 0.35 TCGA-DU-6392-01 7 65432799 65432799 C A GUSB Missense_Mutation p.Q524H 0.23 deleterious(0.02) benign(0.06) TCGA-DU-6392-01 7 65435343 65435343 C T GUSB Missense_Mutation p.A468T 0.63 tolerated(0.56) benign(0.001) TCGA-DU-6392-01 7 65554633 65554633 C A ASL Missense_Mutation p.T338N 0.34 tolerated(0.06) benign(0.039) TCGA-DU-6392-01 7 65751514 65751514 G A TPST1 Missense_Mutation p.D288N 0.55 deleterious(0.01) probably_damaging(0.96) TCGA-DU-6392-01 7 65817504 65817504 G T TPST1 Nonsense_Mutation p.E353* 0.22 TCGA-DU-6392-01 7 6621738 6621738 C T ZDHHC4 Nonsense_Mutation p.Q76* 0.26 TCGA-DU-6392-01 7 66248680 66248680 C T KCTD7 Missense_Mutation p.A122V 0.61 tolerated(0.23) benign(0.002) TCGA-DU-6392-01 7 66458363 66458363 T C SBDS Silent p.R100R 0.54 TCGA-DU-6392-01 7 66459326 66459326 T C SBDS Missense_Mutation p.E44G 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 66463908 66463908 G T TYW1 Missense_Mutation p.K80N 0.21 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6392-01 7 66532272 66532272 T C TYW1 Missense_Mutation p.S386P 0.59 deleterious(0) possibly_damaging(0.555) TCGA-DU-6392-01 7 66532333 66532333 G A TYW1 Missense_Mutation p.R406H 0.59 deleterious(0) benign(0.036) TCGA-DU-6392-01 7 66548517 66548517 C T TYW1 Nonsense_Mutation p.Q459* 0.42 TCGA-DU-6392-01 7 6732277 6732277 G T ZNF12 Missense_Mutation p.P99H 0.53 tolerated(1) benign(0) TCGA-DU-6392-01 7 6736973 6736973 G A ZNF12 Missense_Mutation p.P79S 0.17 tolerated(0.08) benign(0.219) TCGA-DU-6392-01 7 6776853 6776853 G T PMS2CL RNA 0.08 TCGA-DU-6392-01 7 6777542 6777542 G A PMS2CL RNA 0.20 TCGA-DU-6392-01 7 6785753 6785753 G A PMS2CL RNA 0.29 TCGA-DU-6392-01 7 6836475 6836475 G T RSPH10B2 Intron 0.29 TCGA-DU-6392-01 7 69364466 69364466 G A AUTS2 Missense_Mutation p.M168I 0.51 tolerated(0.41) benign(0.001) TCGA-DU-6392-01 7 70229955 70229955 C T AUTS2 Nonsense_Mutation p.Q478* 0.41 TCGA-DU-6392-01 7 72412550 72412550 C T POM121 Missense_Mutation p.A408V 0.07 tolerated(1) benign(0.01) TCGA-DU-6392-01 7 72416129 72416129 C T POM121 Silent p.T913T 0.47 TCGA-DU-6392-01 7 72430703 72430703 C T TRIM74 Missense_Mutation p.R192H 0.42 tolerated(0.14) benign(0.009) TCGA-DU-6392-01 7 72717608 72717608 G A NSUN5 Silent p.V425V 0.48 TCGA-DU-6392-01 7 72732972 72732972 C T TRIM50 Missense_Mutation p.R192H 0.36 tolerated(0.14) benign(0.003) TCGA-DU-6392-01 7 72849436 72849436 G A FZD9 Missense_Mutation p.A367T 0.21 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 7 72892056 72892056 G A BAZ1B Missense_Mutation p.R579W 0.53 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 73010520 73010520 C A MLXIPL Missense_Mutation p.G674V 0.30 deleterious(0) probably_damaging(0.931) TCGA-DU-6392-01 7 73245993 73245993 C T CLDN4 Silent p.S154S 0.55 TCGA-DU-6392-01 7 73456972 73456972 T C ELN Silent p.F87F 0.06 TCGA-DU-6392-01 7 73475434 73475434 C A ELN Missense_Mutation p.P584H 0.19 unknown(0) TCGA-DU-6392-01 7 73770789 73770789 G A CLIP2 Missense_Mutation p.V285M 0.09 deleterious(0.02) possibly_damaging(0.901) TCGA-DU-6392-01 7 73770800 73770800 C T CLIP2 Silent p.I288I 0.08 TCGA-DU-6392-01 7 73790597 73790597 G A CLIP2 Silent p.S622S 0.25 TCGA-DU-6392-01 7 73814804 73814804 C T CLIP2 Silent p.D995D 0.36 TCGA-DU-6392-01 7 7410484 7410484 T - COL28A1 Frame_Shift_Del p.I980Ffs*44 0.09 TCGA-DU-6392-01 7 7412808 7412808 C T COL28A1 Missense_Mutation p.R910H 0.21 deleterious(0) probably_damaging(0.915) TCGA-DU-6392-01 7 74191612 74191612 G T NCF1 Splice_Site p.X25_splice 0.10 TCGA-DU-6392-01 7 74211572 74211572 G A GTF2IRD2 Missense_Mutation p.T760M 0.44 tolerated(0.09) probably_damaging(0.999) TCGA-DU-6392-01 7 74470046 74470046 C T WBSCR16 Missense_Mutation p.R398H 0.60 tolerated(0.34) benign(0.006) TCGA-DU-6392-01 7 74564176 74564176 G A GTF2IRD2B Silent p.T641T 0.41 TCGA-DU-6392-01 7 7476095 7476095 C A COL28A1 Splice_Site p.X598_splice 0.22 TCGA-DU-6392-01 7 75051127 75051127 A G POM121C Missense_Mutation p.F803S 0.25 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 7 75051136 75051136 A G POM121C Missense_Mutation p.V800A 0.16 tolerated(0.11) benign(0.01) TCGA-DU-6392-01 7 75184725 75184725 G A HIP1 Missense_Mutation p.S653F 0.17 deleterious(0.03) benign(0.252) TCGA-DU-6392-01 7 75401213 75401213 G A CCL26 Missense_Mutation p.A61V 0.07 tolerated(0.08) possibly_damaging(0.526) TCGA-DU-6392-01 7 75573233 75573233 C T POR Intron 0.30 TCGA-DU-6392-01 7 75621548 75621548 C A STYXL1 3'Flank 0.08 TCGA-DU-6392-01 7 75958909 75958909 G A YWHAG Silent p.G243G 0.65 TCGA-DU-6392-01 7 76024571 76024571 G A SRCRB4D Silent p.S315S 0.21 TCGA-DU-6392-01 7 7625343 7625343 G A MIOS Missense_Mutation p.M575I 0.57 tolerated(0.37) benign(0.17) TCGA-DU-6392-01 7 7646672 7646672 G A MIOS Missense_Mutation p.M859I 0.46 tolerated(0.42) benign(0.113) TCGA-DU-6392-01 7 76631493 76631493 G A UPK3B Intron 0.38 TCGA-DU-6392-01 7 76871012 76871012 C T CCDC146 Nonsense_Mutation p.Q82* 0.29 TCGA-DU-6392-01 7 76912054 76912054 G A CCDC146 Silent p.L700L 0.10 TCGA-DU-6392-01 7 77256149 77256149 G A PTPN12 Missense_Mutation p.D385N 0.57 deleterious(0) probably_damaging(0.945) TCGA-DU-6392-01 7 77423538 77423538 G A TMEM60 Silent p.V51V 0.27 TCGA-DU-6392-01 7 77569596 77569596 G A PHTF2 Missense_Mutation p.V539I 0.26 deleterious(0) possibly_damaging(0.854) TCGA-DU-6392-01 7 77569659 77569659 G A PHTF2 Intron 0.25 TCGA-DU-6392-01 7 77569880 77569880 A C PHTF2 Silent p.T558T 0.08 TCGA-DU-6392-01 7 77579012 77579012 G A PHTF2 Silent p.E625E 0.62 TCGA-DU-6392-01 7 77789561 77789561 G A MAGI2 Missense_Mutation p.P876S 0.50 deleterious(0.04) possibly_damaging(0.851) TCGA-DU-6392-01 7 794228 794228 C T HEATR2 Missense_Mutation p.R343C 0.59 deleterious(0.04) benign(0.093) TCGA-DU-6392-01 7 794424 794424 C T HEATR2 Missense_Mutation p.A408V 0.83 tolerated(0.09) benign(0.411) TCGA-DU-6392-01 7 80276087 80276087 G A CD36 Missense_Mutation p.A11T 0.57 tolerated(0.76) benign(0.002) TCGA-DU-6392-01 7 80292424 80292424 G A CD36 Missense_Mutation p.R183K 0.23 tolerated(1) benign(0.001) TCGA-DU-6392-01 7 81588629 81588629 G A CACNA2D1 Nonsense_Mutation p.R1041* 0.53 TCGA-DU-6392-01 7 8167510 8167510 C T ICA1 Silent p.S441S 0.21 TCGA-DU-6392-01 7 8167563 8167563 C A ICA1 Missense_Mutation p.G424C 0.27 deleterious(0.01) probably_damaging(0.933) TCGA-DU-6392-01 7 81746384 81746384 T C CACNA2D1 Missense_Mutation p.I168V 0.54 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 7 82545693 82545693 G T PCLO Missense_Mutation p.P3870Q 0.05 unknown(0) TCGA-DU-6392-01 7 8261009 8261009 G A ICA1 Silent p.N92N 0.16 TCGA-DU-6392-01 7 82764321 82764321 C T PCLO Missense_Mutation p.V849I 0.26 unknown(0) TCGA-DU-6392-01 7 82764401 82764401 G T PCLO Missense_Mutation p.P822H 0.07 unknown(0) TCGA-DU-6392-01 7 82784980 82784980 G T PCLO Missense_Mutation p.P326H 0.20 unknown(0) TCGA-DU-6392-01 7 83014660 83014660 C A SEMA3E Missense_Mutation p.A609S 0.06 deleterious(0.01) benign(0.262) TCGA-DU-6392-01 7 83032043 83032043 G A SEMA3E Missense_Mutation p.R350W 0.32 tolerated(0.15) probably_damaging(1) TCGA-DU-6392-01 7 83592532 83592532 G A SEMA3A Nonsense_Mutation p.R617* 0.25 TCGA-DU-6392-01 7 83592606 83592606 C A SEMA3A Missense_Mutation p.S592I 0.07 deleterious(0) possibly_damaging(0.721) TCGA-DU-6392-01 7 83610649 83610649 G T SEMA3A Missense_Mutation p.P547H 0.26 deleterious(0.01) probably_damaging(0.959) TCGA-DU-6392-01 7 84628908 84628908 C T SEMA3D Missense_Mutation p.D728N 0.23 tolerated(0.05) probably_damaging(0.913) TCGA-DU-6392-01 7 84636118 84636118 C A SEMA3D Missense_Mutation p.E636D 0.05 deleterious(0) possibly_damaging(0.822) TCGA-DU-6392-01 7 84666263 84666263 C T SEMA3D Missense_Mutation p.S378N 0.08 deleterious(0) possibly_damaging(0.761) TCGA-DU-6392-01 7 86394808 86394808 C A GRM3 Missense_Mutation p.S116Y 0.36 tolerated(1) probably_damaging(0.987) TCGA-DU-6392-01 7 86468230 86468230 A G GRM3 Missense_Mutation p.N467S 0.53 deleterious(0.04) possibly_damaging(0.873) TCGA-DU-6392-01 7 86803975 86803975 G A DMTF1 Missense_Mutation p.R170H 0.49 tolerated(0.08) benign(0.022) TCGA-DU-6392-01 7 86823402 86823402 G T DMTF1 Missense_Mutation p.S671I 0.19 deleterious_low_confidence(0.01) benign(0.028) TCGA-DU-6392-01 7 86824052 86824052 A - DMTF1 Frame_Shift_Del p.T695Qfs*18 0.09 TCGA-DU-6392-01 7 87043000 87043000 C T ABCB4 Missense_Mutation p.V906I 0.39 tolerated(0.25) benign(0.221) TCGA-DU-6392-01 7 87069024 87069024 C T ABCB4 Missense_Mutation p.D564N 0.60 deleterious(0) probably_damaging(0.984) TCGA-DU-6392-01 7 87180053 87180053 C A ABCB1 Missense_Mutation p.K367N 0.47 tolerated(0.56) benign(0.002) TCGA-DU-6392-01 7 87339908 87339908 C T RUNDC3B Missense_Mutation p.A149V 0.16 tolerated(0.09) possibly_damaging(0.58) TCGA-DU-6392-01 7 87476301 87476301 G A SLC25A40 Silent p.G198G 0.52 TCGA-DU-6392-01 7 87536520 87536520 G T DBF4 Missense_Mutation p.G356V 0.22 deleterious(0) probably_damaging(0.963) TCGA-DU-6392-01 7 87536622 87536622 C T DBF4 Missense_Mutation p.T390I 0.09 tolerated(0.35) benign(0) TCGA-DU-6392-01 7 87536982 87536982 C A DBF4 Missense_Mutation p.T510N 0.22 tolerated(0.08) benign(0.007) TCGA-DU-6392-01 7 87822530 87822530 G T ADAM22 Missense_Mutation p.K892N 0.20 deleterious_low_confidence(0.01) benign(0.119) TCGA-DU-6392-01 7 89909125 89909125 G T C7orf63 Silent p.V430V 0.06 TCGA-DU-6392-01 7 89915682 89915682 C A C7orf63 Missense_Mutation p.S542Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 89936342 89936342 C A C7orf63 Missense_Mutation p.S798Y 0.51 tolerated(0.1) possibly_damaging(0.807) TCGA-DU-6392-01 7 90012310 90012310 C T GTPBP10 Missense_Mutation p.A273V 0.09 deleterious(0.01) possibly_damaging(0.895) TCGA-DU-6392-01 7 90613515 90613515 G T CDK14 Nonsense_Mutation p.G316* 0.23 TCGA-DU-6392-01 7 90896036 90896036 G A FZD1 Missense_Mutation p.G614D 0.54 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 90896174 90896174 G A FZD1 3'UTR 0.29 TCGA-DU-6392-01 7 91690677 91690677 G A AKAP9 Missense_Mutation p.R1902H 0.37 probably_damaging(0.975) TCGA-DU-6392-01 7 91708647 91708647 G A AKAP9 Silent p.Q2400Q 0.58 TCGA-DU-6392-01 7 91715584 91715584 C T AKAP9 Nonsense_Mutation p.R3023* 0.57 TCGA-DU-6392-01 7 91731986 91731986 C A AKAP9 Missense_Mutation p.L3726M 0.06 probably_damaging(0.923) TCGA-DU-6392-01 7 91758259 91758259 C A CYP51A1 Missense_Mutation p.D135Y 0.27 deleterious(0) probably_damaging(0.975) TCGA-DU-6392-01 7 91830633 91830633 T C KRIT1 Silent p.V710V 0.07 TCGA-DU-6392-01 7 91844019 91844019 C A KRIT1 Missense_Mutation p.A546S 0.28 tolerated(0.48) benign(0.006) TCGA-DU-6392-01 7 91852280 91852280 G A KRIT1 Nonsense_Mutation p.R423* 0.23 TCGA-DU-6392-01 7 92126080 92126080 T C PEX1 Silent p.L910L 0.58 TCGA-DU-6392-01 7 92730919 92730919 T - SAMD9 Frame_Shift_Del p.I1498Lfs*44 0.11 TCGA-DU-6392-01 7 92731698 92731698 A C SAMD9 Missense_Mutation p.I1238S 0.16 deleterious(0.04) possibly_damaging(0.776) TCGA-DU-6392-01 7 92761672 92761672 G T SAMD9L Missense_Mutation p.L1205I 0.23 tolerated(0.06) possibly_damaging(0.615) TCGA-DU-6392-01 7 92762300 92762300 G A SAMD9L Silent p.Y995Y 0.29 TCGA-DU-6392-01 7 92762895 92762895 G T SAMD9L Missense_Mutation p.P797H 0.25 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 92763849 92763849 T C SAMD9L Missense_Mutation p.N479S 0.22 tolerated(1) benign(0.002) TCGA-DU-6392-01 7 92887538 92887538 C T CCDC132 Missense_Mutation p.R164C 0.15 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 7 92938235 92938235 G A CCDC132 Missense_Mutation p.G577R 0.58 deleterious(0.02) probably_damaging(0.994) TCGA-DU-6392-01 7 93633637 93633637 A G BET1 5'UTR 0.27 TCGA-DU-6392-01 7 94038679 94038679 G A COL1A2 Missense_Mutation p.G280S 0.23 unknown(0) TCGA-DU-6392-01 7 94039589 94039589 C T COL1A2 Silent p.S357S 0.49 TCGA-DU-6392-01 7 94054475 94054475 G T COL1A2 Missense_Mutation p.G907V 0.21 unknown(0) TCGA-DU-6392-01 7 94059628 94059628 C A COL1A2 Missense_Mutation p.L1342I 0.30 unknown(0) TCGA-DU-6392-01 7 94059746 94059746 A G COL1A2 3'UTR 0.10 TCGA-DU-6392-01 7 94175012 94175012 C T CASD1 Silent p.N544N 0.57 TCGA-DU-6392-01 7 94176487 94176487 G T CASD1 Missense_Mutation p.Q571H 0.08 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 7 94259103 94259103 C A SGCE Missense_Mutation p.A54S 0.54 tolerated(0.08) benign(0.044) TCGA-DU-6392-01 7 94293536 94293536 T C PEG10 Missense_Mutation p.V223A 0.09 tolerated(0.38) benign(0.002) TCGA-DU-6392-01 7 94915538 94915538 C A PPP1R9A Missense_Mutation p.D1210E 0.60 tolerated(0.1) benign(0.071) TCGA-DU-6392-01 7 94915620 94915620 G T PPP1R9A Missense_Mutation p.A1238S 0.30 tolerated(0.23) benign(0.341) TCGA-DU-6392-01 7 94917922 94917922 G T PPP1R9A Missense_Mutation p.Q1268H 0.19 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 94991693 94991693 T G PON3 Missense_Mutation p.E296A 0.09 tolerated(0.09) benign(0.001) TCGA-DU-6392-01 7 95665036 95665036 A G DYNC1I1 Missense_Mutation p.T463A 0.53 tolerated(0.62) benign(0.081) TCGA-DU-6392-01 7 95775897 95775897 G A SLC25A13 Missense_Mutation p.R476W 0.06 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 7 96639119 96639119 G A DLX6 Nonsense_Mutation p.W214* 0.56 TCGA-DU-6392-01 7 97498288 97498288 G A ASNS Missense_Mutation p.P61S 0.25 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 7 97822147 97822147 G T LMTK2 Missense_Mutation p.K790N 0.08 tolerated(0.17) benign(0.045) TCGA-DU-6392-01 7 97822889 97822889 G A LMTK2 Missense_Mutation p.E1038K 0.56 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 97833470 97833470 C A LMTK2 Missense_Mutation p.H1485Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 7 97861270 97861270 G A TECPR1 Missense_Mutation p.S607L 0.29 deleterious(0) probably_damaging(0.963) TCGA-DU-6392-01 7 97862928 97862928 T C TECPR1 Missense_Mutation p.K493E 0.10 tolerated(0.76) benign(0.013) TCGA-DU-6392-01 7 97874290 97874290 C T TECPR1 Silent p.P105P 0.58 TCGA-DU-6392-01 7 97944811 97944811 G A BAIAP2L1 Silent p.H200H 0.08 TCGA-DU-6392-01 7 97949586 97949586 C T BAIAP2L1 Missense_Mutation p.S80N 0.58 tolerated(0.08) benign(0.012) TCGA-DU-6392-01 7 98256624 98256624 C T NPTX2 Missense_Mutation p.P346S 0.58 deleterious(0.03) benign(0.438) TCGA-DU-6392-01 7 98506447 98506447 G A TRRAP Silent p.K404K 0.17 TCGA-DU-6392-01 7 98515137 98515137 G A TRRAP Silent p.S819S 0.24 TCGA-DU-6392-01 7 98524833 98524833 T C TRRAP Missense_Mutation p.Y1007H 0.11 benign(0.099) TCGA-DU-6392-01 7 98555694 98555694 C A TRRAP Missense_Mutation p.L2101I 0.27 possibly_damaging(0.863) TCGA-DU-6392-01 7 98562283 98562283 C T TRRAP Silent p.S2280S 0.20 TCGA-DU-6392-01 7 98564774 98564774 C T TRRAP Silent p.N2422N 0.11 TCGA-DU-6392-01 7 98645338 98645338 C T SMURF1 Missense_Mutation p.R400H 0.51 tolerated(0.48) possibly_damaging(0.525) TCGA-DU-6392-01 7 99022750 99022750 C A ATP5J2-PTCD1 Missense_Mutation p.G518W 0.10 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 7 99026725 99026725 C A ATP5J2-PTCD1 Splice_Site p.X354_splice 0.57 TCGA-DU-6392-01 7 99032629 99032629 C A ATP5J2-PTCD1 Missense_Mutation p.Q128H 0.09 tolerated(0.07) benign(0.192) TCGA-DU-6392-01 7 99042455 99042455 C T CPSF4 Silent p.C49C 0.20 TCGA-DU-6392-01 7 99051747 99051747 C T CPSF4 Silent p.V243V 0.25 TCGA-DU-6392-01 7 99123670 99123670 C A ZKSCAN5 Missense_Mutation p.P336H 0.11 tolerated(0.6) benign(0.001) TCGA-DU-6392-01 7 99129118 99129118 G A ZKSCAN5 Missense_Mutation p.R589H 0.28 deleterious(0.03) probably_damaging(0.996) TCGA-DU-6392-01 7 99654957 99654957 C T ZSCAN21 Missense_Mutation p.P110S 0.19 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 7 99669634 99669634 A G ZNF3 Missense_Mutation p.V158A 0.07 tolerated(0.93) benign(0.001) TCGA-DU-6392-01 7 99673193 99673193 G A ZNF3 Missense_Mutation p.A39V 0.09 deleterious(0.04) benign(0.059) TCGA-DU-6392-01 7 99688570 99688570 G T COPS6 Nonsense_Mutation p.E178* 0.24 TCGA-DU-6392-01 7 99689474 99689474 A G COPS6 3'UTR 0.32 TCGA-DU-6392-01 7 99690594 99690594 C T MCM7 Nonsense_Mutation p.W707* 0.53 TCGA-DU-6392-01 7 99695277 99695277 G A MCM7 Silent p.V359V 0.04 TCGA-DU-6392-01 7 99710503 99710503 G A TAF6 Silent p.P201P 0.08 TCGA-DU-6392-01 7 99754506 99754506 G T C7orf43 Missense_Mutation p.L319M 0.07 deleterious(0.03) probably_damaging(0.934) TCGA-DU-6392-01 7 99757975 99757975 C T GAL3ST4 Missense_Mutation p.S346N 0.55 tolerated(0.63) benign(0.007) TCGA-DU-6392-01 7 99758203 99758203 C T GAL3ST4 Missense_Mutation p.R270H 0.26 tolerated(1) benign(0) TCGA-DU-6392-01 7 99800141 99800141 G A STAG3 Silent p.G876G 0.53 TCGA-DU-6392-01 8 100286531 100286531 G A VPS13B Missense_Mutation p.G874E 0.26 deleterious(0) probably_damaging(0.972) TCGA-DU-6392-01 8 100396497 100396497 G A VPS13B Silent p.T962T 0.09 TCGA-DU-6392-01 8 100479713 100479713 C A VPS13B Missense_Mutation p.L1173I 0.29 deleterious(0.03) possibly_damaging(0.858) TCGA-DU-6392-01 8 100493863 100493863 A G VPS13B Missense_Mutation p.K1235E 0.13 tolerated(0.14) benign(0.014) TCGA-DU-6392-01 8 100493974 100493974 G A VPS13B Missense_Mutation p.A1272T 0.40 tolerated(0.25) possibly_damaging(0.468) TCGA-DU-6392-01 8 100523657 100523657 G A VPS13B Missense_Mutation p.R1542H 0.54 tolerated(0.18) probably_damaging(0.964) TCGA-DU-6392-01 8 100711875 100711875 A G VPS13B Missense_Mutation p.T2082A 0.30 tolerated(0.29) benign(0.02) TCGA-DU-6392-01 8 100830943 100830943 T C VPS13B Silent p.I2841I 0.09 TCGA-DU-6392-01 8 100866174 100866174 G A VPS13B Silent p.L3544L 0.36 TCGA-DU-6392-01 8 101018281 101018281 C A RGS22 Missense_Mutation p.Q806H 0.09 tolerated(0.07) benign(0.02) TCGA-DU-6392-01 8 101076146 101076146 C T RGS22 Missense_Mutation p.D284N 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 101153262 101153262 G T FBXO43 Missense_Mutation p.S407Y 0.45 tolerated(0.19) benign(0.261) TCGA-DU-6392-01 8 101270745 101270745 C T RNF19A 3'UTR 0.12 TCGA-DU-6392-01 8 101299988 101299988 G C RNF19A Missense_Mutation p.H139D 0.26 tolerated(0.12) benign(0.191) TCGA-DU-6392-01 8 101642602 101642602 C T SNX31 Missense_Mutation p.V92M 0.37 tolerated(0.48) benign(0.199) TCGA-DU-6392-01 8 101724636 101724636 C T PABPC1 Missense_Mutation p.R309H 0.34 tolerated(0.08) benign(0.098) TCGA-DU-6392-01 8 101936203 101936203 A C YWHAZ Missense_Mutation p.L220V 0.42 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-DU-6392-01 8 102381656 102381656 G A NACAP1 RNA 0.28 TCGA-DU-6392-01 8 102631870 102631870 G A GRHL2 Missense_Mutation p.R401H 0.34 tolerated(0.24) benign(0.082) TCGA-DU-6392-01 8 102661658 102661658 G A GRHL2 Silent p.R543R 0.31 TCGA-DU-6392-01 8 102661726 102661726 C A GRHL2 Missense_Mutation p.A566E 0.38 deleterious(0) possibly_damaging(0.703) TCGA-DU-6392-01 8 103251166 103251166 A G RRM2B 5'UTR 0.33 TCGA-DU-6392-01 8 103266626 103266626 G A UBR5 Silent p.C2768C 0.40 TCGA-DU-6392-01 8 103288036 103288036 C T UBR5 Missense_Mutation p.G2177E 0.28 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 8 103312275 103312275 G T UBR5 Missense_Mutation p.P1020H 0.07 tolerated(0.09) probably_damaging(0.996) TCGA-DU-6392-01 8 103312351 103312351 A G UBR5 Missense_Mutation p.S995P 0.12 deleterious(0.03) benign(0.007) TCGA-DU-6392-01 8 103327066 103327066 C A UBR5 Missense_Mutation p.Q600H 0.50 deleterious(0.04) benign(0.185) TCGA-DU-6392-01 8 103341316 103341316 A G UBR5 Splice_Site p.X442_splice 0.39 TCGA-DU-6392-01 8 103354859 103354859 C T UBR5 Missense_Mutation p.V314I 0.31 tolerated(0.44) possibly_damaging(0.566) TCGA-DU-6392-01 8 103563935 103563935 G A ODF1 5'UTR 0.36 TCGA-DU-6392-01 8 104342067 104342067 A G FZD6 Missense_Mutation p.T576A 0.11 tolerated_low_confidence(0.7) benign(0.001) TCGA-DU-6392-01 8 104426980 104426980 G T DCAF13 5'UTR 0.33 TCGA-DU-6392-01 8 104453788 104453788 A C DCAF13 Missense_Mutation p.K550Q 0.07 deleterious(0.03) possibly_damaging(0.615) TCGA-DU-6392-01 8 10465534 10465534 G A RP1L1 Missense_Mutation p.A2025V 0.41 unknown(0) TCGA-DU-6392-01 8 10465764 10465764 C A RP1L1 Missense_Mutation p.Q1948H 0.08 unknown(0) TCGA-DU-6392-01 8 10466584 10466584 G A RP1L1 Missense_Mutation p.T1675I 0.34 unknown(0) TCGA-DU-6392-01 8 10466941 10466941 A G RP1L1 Missense_Mutation p.M1556T 0.15 unknown(0) TCGA-DU-6392-01 8 10467277 10467277 G A RP1L1 Missense_Mutation p.A1444V 0.08 unknown(0) TCGA-DU-6392-01 8 10469301 10469301 C A RP1L1 Missense_Mutation p.R769S 0.33 possibly_damaging(0.788) TCGA-DU-6392-01 8 10470315 10470315 G A RP1L1 Silent p.H431H 0.16 TCGA-DU-6392-01 8 10470542 10470542 C A RP1L1 Missense_Mutation p.D356Y 0.32 possibly_damaging(0.852) TCGA-DU-6392-01 8 10480458 10480458 C T RP1L1 Missense_Mutation p.R85Q 0.37 probably_damaging(0.944) TCGA-DU-6392-01 8 104897549 104897549 G T RIMS2 Missense_Mutation p.R241I 0.31 deleterious_low_confidence(0.01) benign(0.373) TCGA-DU-6392-01 8 104955039 104955039 G A RIMS2 Silent p.E862E 0.34 TCGA-DU-6392-01 8 105257185 105257185 A G RIMS2 Missense_Mutation p.T1126A 0.43 deleterious_low_confidence(0.01) benign(0.137) TCGA-DU-6392-01 8 105264056 105264056 A - RIMS2 3'Flank 0.25 TCGA-DU-6392-01 8 105503269 105503269 G A LRP12 Missense_Mutation p.R738C 0.31 deleterious(0) possibly_damaging(0.891) TCGA-DU-6392-01 8 10555162 10555162 C T C8orf74 Missense_Mutation p.R99W 0.40 deleterious(0) possibly_damaging(0.707) TCGA-DU-6392-01 8 10583430 10583430 G A SOX7 Missense_Mutation p.R381C 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 10583614 10583614 G A SOX7 Silent p.G319G 0.50 TCGA-DU-6392-01 8 10583854 10583854 G A SOX7 Silent p.G239G 0.57 TCGA-DU-6392-01 8 106814684 106814684 C T ZFPM2 Missense_Mutation p.P792S 0.39 tolerated(0.13) benign(0.047) TCGA-DU-6392-01 8 107715311 107715311 T G OXR1 Missense_Mutation p.L286V 0.49 tolerated(0.2) benign(0.023) TCGA-DU-6392-01 8 107722882 107722882 C T OXR1 Nonsense_Mutation p.R554* 0.11 TCGA-DU-6392-01 8 107763107 107763107 C T OXR1 Missense_Mutation p.R855C 0.31 tolerated(0.07) benign(0.005) TCGA-DU-6392-01 8 107781845 107781845 C A ABRA Nonsense_Mutation p.E192* 0.39 TCGA-DU-6392-01 8 108296915 108296915 G T ANGPT1 Missense_Mutation p.N400K 0.37 tolerated(1) benign(0.201) TCGA-DU-6392-01 8 108296941 108296941 A C ANGPT1 Missense_Mutation p.F392V 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-DU-6392-01 8 108913404 108913404 T G RSPO2 Missense_Mutation p.K211Q 0.40 tolerated(0.27) benign(0.234) TCGA-DU-6392-01 8 110099767 110099767 T G TRHR Missense_Mutation p.L9R 0.12 tolerated(0.55) benign(0.001) TCGA-DU-6392-01 8 110131387 110131387 G A TRHR Nonsense_Mutation p.W300* 0.37 TCGA-DU-6392-01 8 110348394 110348394 C T ENY2 Missense_Mutation p.A15V 0.21 tolerated(0.58) benign(0.002) TCGA-DU-6392-01 8 110441691 110441691 G T PKHD1L1 Missense_Mutation p.Q1041H 0.29 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 8 110448591 110448591 G A PKHD1L1 Missense_Mutation p.G1177E 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 110456104 110456104 C A PKHD1L1 Silent p.G1588G 0.34 TCGA-DU-6392-01 8 110464461 110464461 G A PKHD1L1 Silent p.G2153G 0.45 TCGA-DU-6392-01 8 110476889 110476889 G A PKHD1L1 Missense_Mutation p.E2610K 0.16 deleterious(0.04) possibly_damaging(0.576) TCGA-DU-6392-01 8 110498895 110498895 C A PKHD1L1 Missense_Mutation p.P3242H 0.08 deleterious(0.03) benign(0.332) TCGA-DU-6392-01 8 110535097 110535097 C T PKHD1L1 Missense_Mutation p.S4103L 0.27 tolerated(0.1) benign(0.085) TCGA-DU-6392-01 8 110569236 110569236 G T EBAG9 Missense_Mutation p.A132S 0.16 tolerated(0.19) possibly_damaging(0.589) TCGA-DU-6392-01 8 110575634 110575634 C T EBAG9 Intron 0.36 TCGA-DU-6392-01 8 11188669 11188669 G A SLC35G5 Silent p.P18P 0.42 TCGA-DU-6392-01 8 11189077 11189077 C T SLC35G5 Silent p.L154L 0.38 TCGA-DU-6392-01 8 11281871 11281871 C A FAM167A 3'UTR 0.35 TCGA-DU-6392-01 8 113275879 113275879 G A CSMD3 Missense_Mutation p.P3284L 0.53 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 8 113529312 113529312 A T CSMD3 Silent p.I1569I 0.11 TCGA-DU-6392-01 8 114327022 114327022 C A CSMD3 Missense_Mutation p.G60V 0.30 tolerated_low_confidence(0.19) benign(0.071) TCGA-DU-6392-01 8 114389092 114389092 G T CSMD3 Intron 0.08 TCGA-DU-6392-01 8 11637279 11637279 C T NEIL2 Missense_Mutation p.S104F 0.40 tolerated(0.53) benign(0.015) TCGA-DU-6392-01 8 116426236 116426236 C A TRPS1 3'UTR 0.12 TCGA-DU-6392-01 8 116599751 116599751 G T TRPS1 Missense_Mutation p.T726N 0.10 deleterious_low_confidence(0) benign(0.353) TCGA-DU-6392-01 8 11687765 11687765 T C FDFT1 Missense_Mutation p.Y239H 0.42 deleterious(0.02) possibly_damaging(0.871) TCGA-DU-6392-01 8 11705621 11705621 T C CTSB Missense_Mutation p.T163A 0.57 tolerated(0.55) benign(0.003) TCGA-DU-6392-01 8 118834803 118834803 G A EXT1 Missense_Mutation p.R440C 0.30 deleterious(0) probably_damaging(0.912) TCGA-DU-6392-01 8 119122459 119122459 C A EXT1 Missense_Mutation p.G276V 0.08 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 8 119593026 119593027 - T SAMD12 Frame_Shift_Ins p.N40Kfs*2 0.25 TCGA-DU-6392-01 8 119936679 119936679 C T TNFRSF11B Silent p.L380L 0.37 TCGA-DU-6392-01 8 119941092 119941092 G T TNFRSF11B Silent p.P159P 0.39 TCGA-DU-6392-01 8 120608229 120608229 C A ENPP2 Missense_Mutation p.G329V 0.26 tolerated_low_confidence(0.28) benign(0.073) TCGA-DU-6392-01 8 120612990 120612990 C T ENPP2 Silent p.R300R 0.26 TCGA-DU-6392-01 8 120818592 120818592 C T TAF2 Missense_Mutation p.V117M 0.06 deleterious(0.03) probably_damaging(0.977) TCGA-DU-6392-01 8 121344960 121344960 G A COL14A1 Missense_Mutation p.A1591T 0.35 tolerated(0.05) benign(0.228) TCGA-DU-6392-01 8 121463488 121463488 C T MTBP Silent p.I117I 0.11 TCGA-DU-6392-01 8 121467747 121467747 C T MTBP Missense_Mutation p.T186I 0.36 tolerated(0.17) benign(0.017) TCGA-DU-6392-01 8 123964116 123964116 C T ZHX2 Silent p.Y122Y 0.29 TCGA-DU-6392-01 8 124117638 124117638 T C TBC1D31 Silent p.S381S 0.14 TCGA-DU-6392-01 8 124195134 124195134 G A FAM83A Missense_Mutation p.R13H 0.20 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 124243798 124243798 G A C8orf76 Missense_Mutation p.A186V 0.36 tolerated(0.22) benign(0.086) TCGA-DU-6392-01 8 124340563 124340563 A G ATAD2 Silent p.T1245T 0.36 TCGA-DU-6392-01 8 124657945 124657945 C T KLHL38 3'UTR 0.42 TCGA-DU-6392-01 8 124658070 124658070 G T KLHL38 Missense_Mutation p.T552N 0.09 deleterious(0.01) possibly_damaging(0.836) TCGA-DU-6392-01 8 124792766 124792766 T C FAM91A1 Silent p.D229D 0.08 TCGA-DU-6392-01 8 124987529 124987529 C T FER1L6 Silent p.T222T 0.41 TCGA-DU-6392-01 8 125072661 125072661 G A FER1L6 Intron 0.54 TCGA-DU-6392-01 8 125131098 125131098 C T FER1L6 Missense_Mutation p.A1768V 0.17 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 125464168 125464168 C T TRMT12 Missense_Mutation p.H334Y 0.34 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 8 125575091 125575091 C A MTSS1 Nonsense_Mutation p.G323* 0.35 TCGA-DU-6392-01 8 125579376 125579376 G A MTSS1 Missense_Mutation p.T221I 0.33 deleterious(0.02) probably_damaging(0.961) TCGA-DU-6392-01 8 125989977 125989977 T C ZNF572 Silent p.I489I 0.07 TCGA-DU-6392-01 8 126017926 126017926 A G SQLE Missense_Mutation p.K235R 0.40 tolerated(0.65) benign(0.029) TCGA-DU-6392-01 8 126044599 126044599 C T KIAA0196 Nonsense_Mutation p.W1073* 0.11 TCGA-DU-6392-01 8 126073352 126073353 - T KIAA0196 Frame_Shift_Ins p.T498Nfs*42 0.20 TCGA-DU-6392-01 8 127569239 127569239 G T FAM84B Missense_Mutation p.H132Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 12863727 12863727 G A KIAA1456 Missense_Mutation p.A6T 0.36 tolerated(0.44) benign(0.048) TCGA-DU-6392-01 8 12946208 12946208 G A DLC1 Silent p.S1360S 0.38 TCGA-DU-6392-01 8 131124478 131124478 C A ASAP1 Nonsense_Mutation p.G755* 0.08 TCGA-DU-6392-01 8 131191542 131191542 C T ASAP1 Silent p.Q238Q 0.36 TCGA-DU-6392-01 8 133152421 133152421 G A KCNQ3 Silent p.A490A 0.45 TCGA-DU-6392-01 8 133182641 133182641 C T KCNQ3 Missense_Mutation p.R392K 0.36 deleterious(0.01) benign(0.156) TCGA-DU-6392-01 8 133192544 133192544 C T KCNQ3 Missense_Mutation p.V213I 0.23 tolerated(0.28) possibly_damaging(0.869) TCGA-DU-6392-01 8 13356716 13356716 A G DLC1 Missense_Mutation p.S289P 0.37 tolerated_low_confidence(0.16) benign(0.229) TCGA-DU-6392-01 8 13356887 13356887 C T DLC1 Missense_Mutation p.A232T 0.07 tolerated_low_confidence(0.16) benign(0.025) TCGA-DU-6392-01 8 13357024 13357024 G T DLC1 Missense_Mutation p.S186Y 0.36 deleterious_low_confidence(0.02) benign(0.109) TCGA-DU-6392-01 8 133816941 133816941 G A PHF20L1 Missense_Mutation p.G268D 0.40 tolerated(0.2) probably_damaging(1) TCGA-DU-6392-01 8 133854807 133854807 G A PHF20L1 Missense_Mutation p.R812Q 0.36 tolerated(0.51) benign(0.002) TCGA-DU-6392-01 8 133854893 133854893 A C PHF20L1 Missense_Mutation p.N841H 0.33 deleterious(0.01) benign(0.045) TCGA-DU-6392-01 8 133899498 133899498 G T TG Missense_Mutation p.E627D 0.08 tolerated(0.06) benign(0.038) TCGA-DU-6392-01 8 133900548 133900548 C T TG Silent p.V832V 0.17 TCGA-DU-6392-01 8 133935689 133935689 C T TG Silent p.D1545D 0.34 TCGA-DU-6392-01 8 133961178 133961178 G T TG Missense_Mutation p.E1797D 0.32 tolerated(0.35) benign(0.247) TCGA-DU-6392-01 8 134024203 134024203 T G TG Missense_Mutation p.I2107S 0.11 deleterious(0) possibly_damaging(0.475) TCGA-DU-6392-01 8 134050923 134050923 C A SLA Missense_Mutation p.S266I 0.13 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 134488066 134488066 G A ST3GAL1 Missense_Mutation p.R68C 0.46 benign(0.394) TCGA-DU-6392-01 8 135524755 135524755 C T ZFAT Silent p.V1108V 0.35 TCGA-DU-6392-01 8 135614391 135614391 G A ZFAT Missense_Mutation p.A524V 0.35 tolerated(1) benign(0) TCGA-DU-6392-01 8 135649810 135649810 G A ZFAT Silent p.S114S 0.31 TCGA-DU-6392-01 8 139155321 139155321 G A FAM135B Missense_Mutation p.T1191M 0.43 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 8 139158255 139158255 C T FAM135B Missense_Mutation p.E1163K 0.36 deleterious(0.02) possibly_damaging(0.643) TCGA-DU-6392-01 8 139788214 139788214 C A COL22A1 Nonsense_Mutation p.E600* 0.29 TCGA-DU-6392-01 8 140631313 140631313 C T KCNK9 Missense_Mutation p.A105T 0.33 deleterious(0.01) possibly_damaging(0.643) TCGA-DU-6392-01 8 141381153 141381153 C T TRAPPC9 Missense_Mutation p.A519T 0.39 tolerated(0.14) benign(0.113) TCGA-DU-6392-01 8 141381188 141381188 C T TRAPPC9 Missense_Mutation p.R507H 0.34 deleterious(0.02) probably_damaging(0.993) TCGA-DU-6392-01 8 141551349 141551349 G T AGO2 Missense_Mutation p.L650I 0.29 deleterious(0) possibly_damaging(0.856) TCGA-DU-6392-01 8 141711023 141711023 A G PTK2 Silent p.D822D 0.32 TCGA-DU-6392-01 8 141889570 141889570 T A PTK2 Missense_Mutation p.K121I 0.39 deleterious(0) possibly_damaging(0.675) TCGA-DU-6392-01 8 142175310 142175310 C A DENND3 Missense_Mutation p.S412Y 0.43 deleterious(0.01) probably_damaging(0.981) TCGA-DU-6392-01 8 142176404 142176404 C T DENND3 Nonsense_Mutation p.Q477* 0.08 TCGA-DU-6392-01 8 142435204 142435204 C T PTP4A3 Silent p.D54D 0.17 TCGA-DU-6392-01 8 142444029 142444029 G T PTP4A3 3'Flank 0.30 TCGA-DU-6392-01 8 143310941 143310941 C A TSNARE1 Splice_Site p.X483_splice 0.33 TCGA-DU-6392-01 8 143623496 143623496 G A BAI1 Missense_Mutation p.D1301N 0.47 tolerated(0.12) benign(0.141) TCGA-DU-6392-01 8 143784766 143784766 G A LY6K Missense_Mutation p.A159T 0.30 tolerated(0.39) unknown(0) TCGA-DU-6392-01 8 143922552 143922552 G A GML Missense_Mutation p.C31Y 0.37 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 8 143955785 143955785 G A CYP11B1 3'UTR 0.11 TCGA-DU-6392-01 8 143955889 143955889 A G CYP11B1 Missense_Mutation p.L471P 0.12 deleterious(0) possibly_damaging(0.485) TCGA-DU-6392-01 8 143957747 143957747 G A CYP11B1 Silent p.S288S 0.36 TCGA-DU-6392-01 8 143958578 143958578 G A CYP11B1 Silent p.N152N 0.38 TCGA-DU-6392-01 8 144102376 144102376 T G LY6E Missense_Mutation p.V7G 0.40 deleterious(0) possibly_damaging(0.462) TCGA-DU-6392-01 8 144400187 144400187 C T TOP1MT Splice_Site p.X405_splice 0.35 TCGA-DU-6392-01 8 144459625 144459625 G T RHPN1 Missense_Mutation p.K127N 0.15 deleterious(0) possibly_damaging(0.888) TCGA-DU-6392-01 8 144621170 144621170 C T ZC3H3 Missense_Mutation p.V123M 0.40 tolerated(1) benign(0.001) TCGA-DU-6392-01 8 144621219 144621219 C T ZC3H3 Silent p.P106P 0.42 TCGA-DU-6392-01 8 144651884 144651884 C T MROH6 Missense_Mutation p.A429T 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 8 144652165 144652165 C T MROH6 Missense_Mutation p.A372T 0.28 tolerated(0.32) benign(0.009) TCGA-DU-6392-01 8 144663400 144663400 G A EEF1D Silent p.G462G 0.12 TCGA-DU-6392-01 8 144681088 144681088 G T TIGD5 Missense_Mutation p.G339C 0.20 deleterious(0.04) benign(0.142) TCGA-DU-6392-01 8 144689168 144689168 G T PYCRL Silent p.I109I 0.14 TCGA-DU-6392-01 8 144775881 144775881 T C ZNF707 Silent p.H99H 0.36 TCGA-DU-6392-01 8 144776283 144776283 C T ZNF707 Silent p.C233C 0.27 TCGA-DU-6392-01 8 144808666 144808666 C T FAM83H Missense_Mutation p.V989M 0.25 tolerated(0.11) benign(0.17) TCGA-DU-6392-01 8 144886324 144886324 C A SCRIB Missense_Mutation p.E1004D 0.32 probably_damaging(0.997) TCGA-DU-6392-01 8 144893380 144893380 C T SCRIB Missense_Mutation p.A348T 0.62 possibly_damaging(0.702) TCGA-DU-6392-01 8 144898851 144898851 C A PUF60 Nonsense_Mutation p.E507* 0.22 TCGA-DU-6392-01 8 144940270 144940270 C A EPPK1 Missense_Mutation p.K2384N 0.08 benign(0.218) TCGA-DU-6392-01 8 144940549 144940549 C T EPPK1 Silent p.V2291V 0.13 TCGA-DU-6392-01 8 144941327 144941327 C T EPPK1 Missense_Mutation p.R2032K 0.47 benign(0.016) TCGA-DU-6392-01 8 144941538 144941538 C T EPPK1 Missense_Mutation p.E1962K 0.38 benign(0.017) TCGA-DU-6392-01 8 144943348 144943348 C T EPPK1 Silent p.V1358V 0.47 TCGA-DU-6392-01 8 144943428 144943428 A C EPPK1 Missense_Mutation p.S1332A 0.41 benign(0.112) TCGA-DU-6392-01 8 144945427 144945427 C A EPPK1 Missense_Mutation p.E665D 0.17 benign(0.345) TCGA-DU-6392-01 8 144947316 144947316 G T EPPK1 Missense_Mutation p.P36T 0.41 benign(0.007) TCGA-DU-6392-01 8 144947320 144947320 C T EPPK1 Silent p.T34T 0.39 TCGA-DU-6392-01 8 144993745 144993745 G A PLEC Missense_Mutation p.A3552V 0.32 probably_damaging(0.978) TCGA-DU-6392-01 8 144994814 144994814 C T PLEC Missense_Mutation p.E3196K 0.25 probably_damaging(0.967) TCGA-DU-6392-01 8 144999605 144999605 G A PLEC Missense_Mutation p.R1635C 0.40 unknown(0) TCGA-DU-6392-01 8 145001826 145001826 G A PLEC Missense_Mutation p.R1307W 0.33 unknown(0) TCGA-DU-6392-01 8 145011406 145011406 C T PLEC Missense_Mutation p.R227Q 0.27 unknown(0) TCGA-DU-6392-01 8 145016656 145016656 A G PLEC Intron 0.50 TCGA-DU-6392-01 8 145094990 145094990 C T SPATC1 Missense_Mutation p.T131M 0.38 tolerated(0.47) benign(0.002) TCGA-DU-6392-01 8 145111623 145111623 C T OPLAH Missense_Mutation p.R581H 0.43 deleterious(0.01) probably_damaging(0.987) TCGA-DU-6392-01 8 145112765 145112765 G A OPLAH Missense_Mutation p.R384C 0.30 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 8 145139388 145139388 C T GPAA1 Missense_Mutation p.R296W 0.29 deleterious(0.01) probably_damaging(0.927) TCGA-DU-6392-01 8 145139718 145139718 C T GPAA1 Silent p.F368F 0.24 TCGA-DU-6392-01 8 145153817 145153817 G T SHARPIN Silent p.P376P 0.38 TCGA-DU-6392-01 8 145154071 145154071 G A SHARPIN Silent p.D320D 0.32 TCGA-DU-6392-01 8 145161325 145161325 C T MAF1 Missense_Mutation p.A153V 0.31 tolerated(0.07) possibly_damaging(0.619) TCGA-DU-6392-01 8 145245827 145245827 C T MROH1 Nonsense_Mutation p.R235* 0.48 TCGA-DU-6392-01 8 145535674 145535674 C T HSF1 Missense_Mutation p.R296C 0.75 tolerated(0.22) benign(0.005) TCGA-DU-6392-01 8 145540576 145540576 G A DGAT1 Silent p.Y417Y 0.45 TCGA-DU-6392-01 8 145584697 145584697 G A SLC52A2 3'UTR 0.26 TCGA-DU-6392-01 8 145617300 145617300 C T ADCK5 Missense_Mutation p.R369W 0.37 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 8 145626853 145626853 C A CPSF1 Missense_Mutation p.A93S 0.30 tolerated(0.62) benign(0.124) TCGA-DU-6392-01 8 145651093 145651093 T C VPS28 Missense_Mutation p.Y56C 0.36 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 8 145659531 145659531 G A TONSL Missense_Mutation p.R1073W 0.18 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 145732411 145732411 G A GPT 3'UTR 0.53 TCGA-DU-6392-01 8 145739847 145739847 T C RECQL4 Silent p.Q561Q 0.11 TCGA-DU-6392-01 8 145740734 145740734 G T RECQL4 Missense_Mutation p.L456M 0.14 tolerated(0.18) benign(0.248) TCGA-DU-6392-01 8 145741146 145741146 A G RECQL4 Splice_Site p.X420_splice 0.44 TCGA-DU-6392-01 8 145773468 145773468 G A ARHGAP39 Silent p.F334F 0.32 TCGA-DU-6392-01 8 145947656 145947656 G A ZNF251 Silent p.C463C 0.30 TCGA-DU-6392-01 8 145999691 145999691 G A ZNF34 Missense_Mutation p.R215C 0.33 deleterious(0) probably_damaging(0.932) TCGA-DU-6392-01 8 146068162 146068162 A C ZNF7 Missense_Mutation p.E557A 0.33 deleterious(0.03) possibly_damaging(0.644) TCGA-DU-6392-01 8 146156218 146156218 G T ZNF16 Missense_Mutation p.T652N 0.32 deleterious(0.02) possibly_damaging(0.508) TCGA-DU-6392-01 8 146156927 146156927 G A ZNF16 Missense_Mutation p.R416W 0.31 tolerated(0.12) benign(0.263) TCGA-DU-6392-01 8 146157522 146157522 G T ZNF16 Silent p.T217T 0.12 TCGA-DU-6392-01 8 146278270 146278270 G A C8orf33 Missense_Mutation p.S102N 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 8 163298 163298 C T RPL23AP53 RNA 0.29 TCGA-DU-6392-01 8 16850571 16850571 C A FGF20 3'UTR 0.31 TCGA-DU-6392-01 8 16944541 16944541 G A MICU3 Missense_Mutation p.M282I 0.38 tolerated(0.13) benign(0.008) TCGA-DU-6392-01 8 16956025 16956025 G A MICU3 Missense_Mutation p.R316H 0.38 deleterious(0.01) benign(0.043) TCGA-DU-6392-01 8 16963025 16963025 C T MICU3 Nonsense_Mutation p.R397* 0.43 TCGA-DU-6392-01 8 17089983 17089983 C A CNOT7 Nonsense_Mutation p.G228* 0.30 TCGA-DU-6392-01 8 17102653 17102653 C T CNOT7 Silent p.A3A 0.27 TCGA-DU-6392-01 8 17170828 17170828 T C MTMR7 Missense_Mutation p.I316M 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-DU-6392-01 8 1728703 1728703 C T CLN8 Silent p.N277N 0.31 TCGA-DU-6392-01 8 17415834 17415834 C T SLC7A2 Missense_Mutation p.A449V 0.42 tolerated(0.06) benign(0.287) TCGA-DU-6392-01 8 17500218 17500218 G T PDGFRL Missense_Mutation p.D346Y 0.37 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 8 17573323 17573323 G T MTUS1 Missense_Mutation p.P846H 0.37 deleterious(0) probably_damaging(0.967) TCGA-DU-6392-01 8 17611316 17611316 C T MTUS1 Silent p.K667K 0.09 TCGA-DU-6392-01 8 17739544 17739544 T C FGL1 Missense_Mutation p.T70A 0.38 tolerated(0.47) benign(0.003) TCGA-DU-6392-01 8 17810546 17810546 G A PCM1 Missense_Mutation p.S380N 0.22 deleterious(0.01) benign(0.008) TCGA-DU-6392-01 8 17814820 17814820 A T PCM1 Missense_Mutation p.N565I 0.06 deleterious(0) possibly_damaging(0.48) TCGA-DU-6392-01 8 17822079 17822079 C T PCM1 Missense_Mutation p.T886M 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 18080414 18080415 - T NAT1 Frame_Shift_Ins p.T351Yfs*5 0.36 TCGA-DU-6392-01 8 1817379 1817379 C T ARHGEF10 Silent p.Y214Y 0.38 TCGA-DU-6392-01 8 1828318 1828318 G T ARHGEF10 Missense_Mutation p.K316N 0.31 tolerated(0.13) possibly_damaging(0.777) TCGA-DU-6392-01 8 18430054 18430054 G A PSD3 Missense_Mutation p.T923I 0.38 tolerated(0.06) probably_damaging(0.943) TCGA-DU-6392-01 8 1882009 1882009 C T ARHGEF10 Silent p.G1041G 0.10 TCGA-DU-6392-01 8 19316023 19316023 C T CSGALNACT1 Silent p.K255K 0.11 TCGA-DU-6392-01 8 1950787 1950787 C T KBTBD11 Missense_Mutation p.R477C 0.50 deleterious(0) probably_damaging(0.943) TCGA-DU-6392-01 8 195916 195916 C T ZNF596 Missense_Mutation p.H357Y 0.29 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 8 19675794 19675794 G A INTS10 Missense_Mutation p.M46I 0.28 deleterious(0.05) benign(0.33) TCGA-DU-6392-01 8 19805744 19805744 G T LPL Missense_Mutation p.D48Y 0.14 tolerated(0.18) benign(0.126) TCGA-DU-6392-01 8 20070400 20070400 C T ATP6V1B2 Missense_Mutation p.A304V 0.39 deleterious(0) possibly_damaging(0.868) TCGA-DU-6392-01 8 2007344 2007344 G A MYOM2 Missense_Mutation p.V211I 0.51 tolerated(0.18) probably_damaging(0.999) TCGA-DU-6392-01 8 20110344 20110344 G A LZTS1 Silent p.Y366Y 0.51 TCGA-DU-6392-01 8 20110545 20110545 C T LZTS1 Silent p.P299P 0.41 TCGA-DU-6392-01 8 2046693 2046693 G A MYOM2 Missense_Mutation p.G774S 0.40 tolerated(0.1) benign(0.204) TCGA-DU-6392-01 8 2092994 2092994 A C MYOM2 3'UTR 0.33 TCGA-DU-6392-01 8 21560348 21560348 G A GFRA2 Missense_Mutation p.T396I 0.29 tolerated(0.06) possibly_damaging(0.494) TCGA-DU-6392-01 8 21771103 21771103 C T DOK2 Missense_Mutation p.G4R 0.35 tolerated(0.53) benign(0.055) TCGA-DU-6392-01 8 21833992 21833992 C T XPO7 Silent p.D241D 0.34 TCGA-DU-6392-01 8 21938863 21938863 G A DMTN Silent p.R369R 0.30 TCGA-DU-6392-01 8 21938907 21938907 C A DMTN Missense_Mutation p.P384H 0.09 deleterious(0) probably_damaging(0.926) TCGA-DU-6392-01 8 21955336 21955336 G A FAM160B2 Missense_Mutation p.A171T 0.35 tolerated(0.72) benign(0.004) TCGA-DU-6392-01 8 21957283 21957283 C T FAM160B2 Missense_Mutation p.A407V 0.50 tolerated(0.45) benign(0.013) TCGA-DU-6392-01 8 22006263 22006263 C T LGI3 Missense_Mutation p.A353T 0.34 tolerated(0.4) benign(0.115) TCGA-DU-6392-01 8 22006277 22006277 C T LGI3 Missense_Mutation p.S348N 0.41 deleterious(0) probably_damaging(0.975) TCGA-DU-6392-01 8 22011708 22011708 G A LGI3 Silent p.D123D 0.32 TCGA-DU-6392-01 8 22019182 22019182 G A SFTPC 5'UTR 0.33 TCGA-DU-6392-01 8 22021024 22021024 C A SFTPC Missense_Mutation p.L134I 0.12 deleterious(0) benign(0.207) TCGA-DU-6392-01 8 22052380 22052380 C T BMP1 Silent p.F529F 0.44 TCGA-DU-6392-01 8 22054225 22054225 G A BMP1 Missense_Mutation p.G600S 0.33 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 8 22056812 22056812 A G BMP1 Intron 0.13 TCGA-DU-6392-01 8 22069271 22069271 G A BMP1 3'UTR 0.13 TCGA-DU-6392-01 8 22085844 22085844 G A PHYHIP Silent p.S9S 0.27 TCGA-DU-6392-01 8 22136874 22136874 C T PIWIL2 5'UTR 0.54 TCGA-DU-6392-01 8 22211839 22211839 C T PIWIL2 Missense_Mutation p.H905Y 0.11 deleterious(0.03) probably_damaging(0.941) TCGA-DU-6392-01 8 22213056 22213056 G A PIWIL2 3'UTR 0.53 TCGA-DU-6392-01 8 22273680 22273680 G A SLC39A14 Missense_Mutation p.G345D 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 22275310 22275310 G A SLC39A14 Missense_Mutation p.A432T 0.33 deleterious(0) probably_damaging(0.98) TCGA-DU-6392-01 8 22479052 22479052 G T BIN3 Silent p.I215I 0.43 TCGA-DU-6392-01 8 22481832 22481832 C T BIN3 Missense_Mutation p.R128Q 0.16 deleterious(0.03) probably_damaging(0.991) TCGA-DU-6392-01 8 22548564 22548564 G T EGR3 Missense_Mutation p.L196I 0.48 tolerated(0.34) benign(0.125) TCGA-DU-6392-01 8 22584731 22584731 G A PEBP4 Silent p.G120G 0.28 TCGA-DU-6392-01 8 22865348 22865348 C T RHOBTB2 Intron 0.30 TCGA-DU-6392-01 8 22865409 22865409 G A RHOBTB2 Intron 0.46 TCGA-DU-6392-01 8 22900721 22900721 G A TNFRSF10B Silent p.D60D 0.35 TCGA-DU-6392-01 8 23003220 23003220 G T TNFRSF10D Silent p.R233R 0.48 TCGA-DU-6392-01 8 23155602 23155602 A G LOXL2 Missense_Mutation p.F760S 0.15 deleterious(0) probably_damaging(0.961) TCGA-DU-6392-01 8 23167278 23167278 G A LOXL2 Missense_Mutation p.R595W 0.29 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 23177529 23177529 G A LOXL2 Nonsense_Mutation p.R447* 0.36 TCGA-DU-6392-01 8 23217682 23217682 G A LOXL2 Missense_Mutation p.T151M 0.35 deleterious(0.02) benign(0.149) TCGA-DU-6392-01 8 24170973 24170973 G A ADAM28 Silent p.E152E 0.40 TCGA-DU-6392-01 8 24188819 24188819 C A ADAM28 Missense_Mutation p.D420E 0.33 tolerated(0.82) possibly_damaging(0.638) TCGA-DU-6392-01 8 24250788 24250788 C T ADAMDEC1 Missense_Mutation p.P74L 0.26 tolerated(0.11) benign(0.438) TCGA-DU-6392-01 8 24256482 24256482 G A ADAMDEC1 Silent p.T286T 0.49 TCGA-DU-6392-01 8 24256926 24256926 G A ADAMDEC1 Missense_Mutation p.R317Q 0.43 tolerated(0.61) benign(0.249) TCGA-DU-6392-01 8 24298525 24298525 C A ADAM7 5'Flank 0.20 TCGA-DU-6392-01 8 24324368 24324368 A G ADAM7 Missense_Mutation p.D149G 0.08 deleterious(0.01) possibly_damaging(0.811) TCGA-DU-6392-01 8 24776146 24776146 G A NEFM 3'UTR 0.09 TCGA-DU-6392-01 8 24811116 24811116 C T CTD-2168K21.2 5'Flank 0.42 TCGA-DU-6392-01 8 25159865 25159865 C T DOCK5 Missense_Mutation p.R291W 0.20 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 8 25224467 25224467 C T DOCK5 Missense_Mutation p.R1069C 0.32 deleterious(0.02) probably_damaging(0.987) TCGA-DU-6392-01 8 25230229 25230229 G A DOCK5 Missense_Mutation p.V1227M 0.35 deleterious(0.02) benign(0.149) TCGA-DU-6392-01 8 25249495 25249495 C A DOCK5 Missense_Mutation p.A1480D 0.50 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 8 25890667 25890667 C T EBF2 Missense_Mutation p.R162Q 0.25 deleterious(0.01) benign(0.042) TCGA-DU-6392-01 8 26217769 26217769 G T PPP2R2A Missense_Mutation p.R154I 0.12 tolerated(0.06) benign(0.272) TCGA-DU-6392-01 8 26221333 26221333 T C PPP2R2A Missense_Mutation p.M310T 0.32 deleterious(0) possibly_damaging(0.451) TCGA-DU-6392-01 8 26227731 26227731 G A PPP2R2A Silent p.S392S 0.46 TCGA-DU-6392-01 8 26237909 26237909 C A BNIP3L 5'Flank 0.31 TCGA-DU-6392-01 8 26366088 26366088 C T PNMA2 Missense_Mutation p.A62T 0.15 tolerated(0.2) benign(0.001) TCGA-DU-6392-01 8 26623572 26623572 C T ADRA1A Intron 0.10 TCGA-DU-6392-01 8 26721922 26721922 C T ADRA1A Missense_Mutation p.A189T 0.18 deleterious(0.05) probably_damaging(1) TCGA-DU-6392-01 8 27287914 27287914 G A PTK2B Silent p.K216K 0.29 TCGA-DU-6392-01 8 27288419 27288419 G A PTK2B Silent p.Q232Q 0.36 TCGA-DU-6392-01 8 27456013 27456013 G A CLU Missense_Mutation p.A435V 0.34 tolerated(0.06) possibly_damaging(0.652) TCGA-DU-6392-01 8 27516827 27516827 C T SCARA3 Silent p.D380D 0.47 TCGA-DU-6392-01 8 27657152 27657152 C T ESCO2 Missense_Mutation p.A531V 0.36 tolerated(0.07) probably_damaging(0.951) TCGA-DU-6392-01 8 27668569 27668569 G A PBK Silent p.D226D 0.11 TCGA-DU-6392-01 8 27680707 27680707 C T PBK Silent p.L56L 0.14 TCGA-DU-6392-01 8 27737199 27737199 C T SCARA5 Missense_Mutation p.R413H 0.42 deleterious(0.05) benign(0.052) TCGA-DU-6392-01 8 27922074 27922074 C T NUGGC Missense_Mutation p.D296N 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6392-01 8 28573827 28573827 G A EXTL3 Missense_Mutation p.R84H 0.32 deleterious(0.02) possibly_damaging(0.833) TCGA-DU-6392-01 8 28573840 28573840 G A EXTL3 Silent p.S88S 0.30 TCGA-DU-6392-01 8 28574068 28574068 C T EXTL3 Silent p.D164D 0.26 TCGA-DU-6392-01 8 28906606 28906606 G T HMBOX1 Intron 0.42 TCGA-DU-6392-01 8 29006204 29006204 G T KIF13B Missense_Mutation p.S568Y 0.36 tolerated(0.29) benign(0.003) TCGA-DU-6392-01 8 29048567 29048567 G A KIF13B Missense_Mutation p.A57V 0.31 deleterious(0) probably_damaging(0.971) TCGA-DU-6392-01 8 2967741 2967741 C A CSMD1 Nonsense_Mutation p.G2183* 0.33 TCGA-DU-6392-01 8 29963541 29963541 G A LEPROTL1 Intron 0.36 TCGA-DU-6392-01 8 30655186 30655186 A G PPP2CB Missense_Mutation p.C133R 0.16 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 8 30700227 30700227 C T TEX15 Missense_Mutation p.V2103I 0.22 tolerated(0.57) benign(0.041) TCGA-DU-6392-01 8 30701743 30701743 G A TEX15 Silent p.Y1597Y 0.45 TCGA-DU-6392-01 8 30922521 30922521 G A WRN Missense_Mutation p.R149H 0.40 tolerated(0.18) benign(0.065) TCGA-DU-6392-01 8 30938402 30938402 G T WRN Missense_Mutation p.D287Y 0.27 deleterious(0.02) probably_damaging(0.91) TCGA-DU-6392-01 8 30945300 30945300 A T WRN Missense_Mutation p.E480D 0.32 tolerated(0.1) possibly_damaging(0.728) TCGA-DU-6392-01 8 30973987 30973987 C T WRN Silent p.G797G 0.37 TCGA-DU-6392-01 8 32453412 32453412 G A NRG1 Missense_Mutation p.R56Q 0.43 deleterious(0) benign(0.125) TCGA-DU-6392-01 8 32585588 32585588 C T NRG1 Silent p.Y208Y 0.34 TCGA-DU-6392-01 8 32600345 32600345 G T NRG1 Intron 0.36 TCGA-DU-6392-01 8 33361070 33361070 C T TTI2 Missense_Mutation p.R379Q 0.31 deleterious(0.04) possibly_damaging(0.846) TCGA-DU-6392-01 8 33406360 33406360 G A RNF122 Missense_Mutation p.R127C 0.49 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 8 35541169 35541169 C T UNC5D Silent p.D225D 0.33 TCGA-DU-6392-01 8 35579906 35579906 C T UNC5D Silent p.V432V 0.34 TCGA-DU-6392-01 8 35616915 35616915 C A UNC5D Silent p.T747T 0.39 TCGA-DU-6392-01 8 37555577 37555577 C T ZNF703 Silent p.H386H 0.50 TCGA-DU-6392-01 8 37556060 37556060 C A ZNF703 Silent p.P547P 0.22 TCGA-DU-6392-01 8 37635711 37635711 T C PROSC 3'UTR 0.46 TCGA-DU-6392-01 8 37704663 37704663 A G BRF2 Missense_Mutation p.V82A 0.43 tolerated(0.05) benign(0.103) TCGA-DU-6392-01 8 37720396 37720397 - T RAB11FIP1 3'UTR 0.48 TCGA-DU-6392-01 8 37728878 37728878 G C RAB11FIP1 Missense_Mutation p.L1148V 0.35 tolerated(0.11) benign(0.308) TCGA-DU-6392-01 8 37732659 37732659 C A RAB11FIP1 Missense_Mutation p.K332N 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-DU-6392-01 8 37793302 37793302 C A GOT1L1 Missense_Mutation p.Q283H 0.12 deleterious(0.03) possibly_damaging(0.827) TCGA-DU-6392-01 8 37967910 37967910 T C ASH2L Missense_Mutation p.F139L 0.10 deleterious(0) possibly_damaging(0.756) TCGA-DU-6392-01 8 37985945 37985945 C T ASH2L Silent p.T434T 0.33 TCGA-DU-6392-01 8 38090666 38090666 T G DDHD2 Missense_Mutation p.S52A 0.36 tolerated(0.33) benign(0.411) TCGA-DU-6392-01 8 38092032 38092032 C T DDHD2 Missense_Mutation p.T114M 0.41 deleterious(0.02) possibly_damaging(0.868) TCGA-DU-6392-01 8 38099780 38099780 G A DDHD2 Missense_Mutation p.R242H 0.34 deleterious(0.01) benign(0.046) TCGA-DU-6392-01 8 38099827 38099827 G T DDHD2 Nonsense_Mutation p.E258* 0.10 TCGA-DU-6392-01 8 38124795 38124795 T C PPAPDC1B Silent p.G151G 0.45 TCGA-DU-6392-01 8 381365 381365 A G FBXO25 Silent p.E53E 0.15 TCGA-DU-6392-01 8 38162272 38162272 C T WHSC1L1 Missense_Mutation p.R815H 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 38173513 38173513 G A WHSC1L1 Missense_Mutation p.R635C 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 38187117 38187117 G A WHSC1L1 Missense_Mutation p.R454W 0.43 deleterious(0.01) probably_damaging(0.918) TCGA-DU-6392-01 8 38285863 38285863 C T FGFR1 Intron 0.27 TCGA-DU-6392-01 8 38386085 38386085 C T C8orf86 Missense_Mutation p.S24N 0.46 tolerated_low_confidence(0.14) benign(0.383) TCGA-DU-6392-01 8 38809772 38809772 G A PLEKHA2 Missense_Mutation p.R192H 0.44 deleterious(0) benign(0.003) TCGA-DU-6392-01 8 38832617 38832617 G A HTRA4 Silent p.A178A 0.35 TCGA-DU-6392-01 8 38840057 38840057 G A HTRA4 Missense_Mutation p.M385I 0.43 deleterious(0) possibly_damaging(0.795) TCGA-DU-6392-01 8 38884200 38884200 G T ADAM9 Missense_Mutation p.G334V 0.06 deleterious(0.05) benign(0.223) TCGA-DU-6392-01 8 38940565 38940565 A G ADAM9 Missense_Mutation p.S681G 0.08 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 8 39505913 39505913 G T ADAM18 Missense_Mutation p.R366I 0.34 deleterious(0) possibly_damaging(0.521) TCGA-DU-6392-01 8 39550173 39550173 G A ADAM18 Missense_Mutation p.A626T 0.40 tolerated(0.1) benign(0.08) TCGA-DU-6392-01 8 39550197 39550197 G T ADAM18 Missense_Mutation p.G634W 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 40554769 40554769 G A ZMAT4 Missense_Mutation p.T115I 0.34 tolerated(0.09) benign(0.051) TCGA-DU-6392-01 8 41122976 41122977 - T SFRP1 Frame_Shift_Ins p.E219Rfs*37 0.23 TCGA-DU-6392-01 8 41791219 41791219 T C KAT6A Missense_Mutation p.S1507G 0.07 unknown(0) TCGA-DU-6392-01 8 41800272 41800272 T C KAT6A Intron 0.09 TCGA-DU-6392-01 8 41839368 41839368 C A KAT6A Missense_Mutation p.G272C 0.12 probably_damaging(1) TCGA-DU-6392-01 8 418714 418714 G T FBXO25 Splice_Site p.X339_splice 0.21 TCGA-DU-6392-01 8 42033629 42033629 C T PLAT Missense_Mutation p.R524H 0.38 tolerated(0.2) benign(0.02) TCGA-DU-6392-01 8 42163935 42163935 G A IKBKB Silent p.G184G 0.33 TCGA-DU-6392-01 8 42196180 42196180 G T POLB Missense_Mutation p.G13V 0.10 tolerated(0.19) benign(0.062) TCGA-DU-6392-01 8 42234530 42234530 G A DKK4 Missense_Mutation p.L12F 0.40 tolerated(0.47) benign(0.005) TCGA-DU-6392-01 8 42234556 42234556 G A DKK4 Missense_Mutation p.A3V 0.32 tolerated(0.56) benign(0.001) TCGA-DU-6392-01 8 42260974 42260974 C A VDAC3 Missense_Mutation p.L234I 0.36 tolerated(0.57) benign(0.007) TCGA-DU-6392-01 8 42320605 42320605 G A SLC20A2 Missense_Mutation p.A145V 0.34 deleterious(0.02) benign(0.353) TCGA-DU-6392-01 8 42329808 42329808 C T SLC20A2 Missense_Mutation p.G34D 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 42552626 42552626 T - CHRNB3 5'UTR 0.10 TCGA-DU-6392-01 8 42552708 42552708 C T CHRNB3 Silent p.L7L 0.43 TCGA-DU-6392-01 8 42694369 42694369 G T THAP1 Missense_Mutation p.A76D 0.35 deleterious(0) probably_damaging(0.967) TCGA-DU-6392-01 8 42977492 42977492 G A POMK Nonsense_Mutation p.W175* 0.39 TCGA-DU-6392-01 8 43002131 43002131 G T HGSNAT Missense_Mutation p.Q53H 0.38 deleterious(0.01) benign(0.064) TCGA-DU-6392-01 8 43014188 43014188 G A HGSNAT Splice_Site p.X165_splice 0.26 TCGA-DU-6392-01 8 48320493 48320493 C T SPIDR Nonsense_Mutation p.Q283* 0.10 TCGA-DU-6392-01 8 48715981 48715981 C A PRKDC Missense_Mutation p.D3269Y 0.08 possibly_damaging(0.785) TCGA-DU-6392-01 8 48715996 48715996 C A PRKDC Nonsense_Mutation p.E3264* 0.13 TCGA-DU-6392-01 8 48749833 48749833 G A PRKDC Silent p.S2566S 0.34 TCGA-DU-6392-01 8 48761853 48761853 G A PRKDC Missense_Mutation p.A2380V 0.29 benign(0.008) TCGA-DU-6392-01 8 48766717 48766717 T C PRKDC Missense_Mutation p.I2273V 0.32 possibly_damaging(0.814) TCGA-DU-6392-01 8 48771461 48771461 C T PRKDC Silent p.T2097T 0.49 TCGA-DU-6392-01 8 48826496 48826496 C A PRKDC Nonsense_Mutation p.E916* 0.10 TCGA-DU-6392-01 8 48883349 48883349 C A MCM4 Nonsense_Mutation p.C571* 0.40 TCGA-DU-6392-01 8 48885589 48885589 C T MCM4 Missense_Mutation p.R701W 0.48 deleterious(0.01) possibly_damaging(0.67) TCGA-DU-6392-01 8 48887319 48887319 G A MCM4 Missense_Mutation p.G721D 0.41 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 8 53076618 53076618 T G ST18 Missense_Mutation p.K443T 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 53084707 53084707 A G ST18 Silent p.T238T 0.39 TCGA-DU-6392-01 8 53084774 53084774 G T ST18 Missense_Mutation p.P216H 0.27 tolerated_low_confidence(0.7) benign(0) TCGA-DU-6392-01 8 53586799 53586799 G T RB1CC1 Missense_Mutation p.P203Q 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 8 53852687 53852687 C A NPBWR1 Missense_Mutation p.L74M 0.42 tolerated(0.16) possibly_damaging(0.745) TCGA-DU-6392-01 8 54628516 54628516 A G ATP6V1H 3'UTR 0.42 TCGA-DU-6392-01 8 54963656 54963656 C T LYPLA1 Silent p.T185T 0.38 TCGA-DU-6392-01 8 55055240 55055240 G A MRPL15 Silent p.T149T 0.43 TCGA-DU-6392-01 8 55539476 55539476 C A RP1 Missense_Mutation p.L1012M 0.33 deleterious(0) possibly_damaging(0.873) TCGA-DU-6392-01 8 55541245 55541245 G T RP1 Missense_Mutation p.E1601D 0.12 tolerated(0.48) benign(0.02) TCGA-DU-6392-01 8 56986443 56986443 G T RPS20 Intron 0.08 TCGA-DU-6392-01 8 57876370 57876370 T G IMPAD1 Missense_Mutation p.E354D 0.39 tolerated(0.54) benign(0.007) TCGA-DU-6392-01 8 59059400 59059400 G A FAM110B Missense_Mutation p.R204H 0.41 deleterious(0.04) possibly_damaging(0.759) TCGA-DU-6392-01 8 59409377 59409377 G T CYP7A1 Missense_Mutation p.H232N 0.08 tolerated(0.28) possibly_damaging(0.688) TCGA-DU-6392-01 8 59498525 59498525 G A NSMAF Silent p.G858G 0.36 TCGA-DU-6392-01 8 59851961 59851961 C T TOX Missense_Mutation p.G104D 0.28 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 8 61533300 61533300 G A RAB2A Missense_Mutation p.G204E 0.29 tolerated(0.45) benign(0.016) TCGA-DU-6392-01 8 61654159 61654159 T C CHD7 Silent p.H56H 0.18 TCGA-DU-6392-01 8 61736639 61736639 G A CHD7 Intron 0.35 TCGA-DU-6392-01 8 61736716 61736716 G T CHD7 Intron 0.62 TCGA-DU-6392-01 8 61750301 61750301 T C CHD7 Silent p.Y1420Y 0.46 TCGA-DU-6392-01 8 62475386 62475386 T C ASPH Missense_Mutation p.N452D 0.31 tolerated(0.89) benign(0.001) TCGA-DU-6392-01 8 62563619 62563619 G A ASPH Silent p.H160H 0.35 TCGA-DU-6392-01 8 6302093 6302093 G A MCPH1 Missense_Mutation p.D284N 0.13 tolerated(1) benign(0.004) TCGA-DU-6392-01 8 6312716 6312716 C A MCPH1 Silent p.G626G 0.11 TCGA-DU-6392-01 8 6357567 6357567 A G ANGPT2 3'UTR 0.33 TCGA-DU-6392-01 8 63948219 63948219 C T GGH Missense_Mutation p.V74I 0.19 tolerated(1) benign(0.005) TCGA-DU-6392-01 8 65528285 65528285 C A CYP7B1 Silent p.L271L 0.07 TCGA-DU-6392-01 8 6605223 6605223 C T AGPAT5 Nonsense_Mutation p.R207* 0.12 TCGA-DU-6392-01 8 66605934 66605934 C T MTFR1 Missense_Mutation p.A74V 0.22 tolerated(0.45) benign(0.013) TCGA-DU-6392-01 8 6728201 6728201 G T DEFB1 3'UTR 0.28 TCGA-DU-6392-01 8 67355048 67355048 C A ADHFE1 Missense_Mutation p.P38H 0.30 deleterious(0.04) benign(0.001) TCGA-DU-6392-01 8 67369316 67369316 T G ADHFE1 Silent p.L359L 0.10 TCGA-DU-6392-01 8 67372645 67372645 C A ADHFE1 Missense_Mutation p.A422D 0.14 tolerated(0.16) benign(0.093) TCGA-DU-6392-01 8 67428264 67428264 A T C8orf46 Nonsense_Mutation p.K193* 0.34 TCGA-DU-6392-01 8 67484760 67484760 G A MYBL1 Missense_Mutation p.A562V 0.46 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 67752295 67752295 G A SGK3 Missense_Mutation p.A267T 0.38 tolerated(0.06) possibly_damaging(0.767) TCGA-DU-6392-01 8 67803186 67803186 A G MCMDC2 Missense_Mutation p.K387R 0.07 tolerated(0.16) benign(0.11) TCGA-DU-6392-01 8 67998332 67998332 G A CSPP1 Missense_Mutation p.R133H 0.46 deleterious(0.01) benign(0.028) TCGA-DU-6392-01 8 68107748 68107748 C T CSPP1 Nonsense_Mutation p.Q1196* 0.37 TCGA-DU-6392-01 8 68111116 68111116 G A ARFGEF1 3'UTR 0.29 TCGA-DU-6392-01 8 68123763 68123763 C G ARFGEF1 Missense_Mutation p.A1592P 0.09 tolerated(0.27) benign(0) TCGA-DU-6392-01 8 68334878 68334878 G T CPA6 Missense_Mutation p.P392H 0.10 deleterious(0.02) benign(0.35) TCGA-DU-6392-01 8 68430256 68430256 G A CPA6 Silent p.I73I 0.09 TCGA-DU-6392-01 8 68939479 68939479 G A PREX2 Missense_Mutation p.R155Q 0.37 tolerated(0.23) probably_damaging(0.994) TCGA-DU-6392-01 8 68995502 68995503 - T PREX2 Frame_Shift_Ins p.A638Cfs*3 0.24 TCGA-DU-6392-01 8 6913035 6913035 C T DEFA5 Missense_Mutation p.R68Q 0.27 deleterious(0.01) benign(0.266) TCGA-DU-6392-01 8 69633665 69633665 C T C8orf34 Missense_Mutation p.T466I 0.22 tolerated(0.08) benign(0.006) TCGA-DU-6392-01 8 70964426 70964426 G A PRDM14 Silent p.S534S 0.35 TCGA-DU-6392-01 8 71075085 71075085 C T NCOA2 Silent p.K279K 0.35 TCGA-DU-6392-01 8 71495549 71495549 G T TRAM1 Missense_Mutation p.L301M 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 71510176 71510176 G A TRAM1 Missense_Mutation p.A127V 0.48 tolerated(1) benign(0.044) TCGA-DU-6392-01 8 72964986 72964986 G T TRPA1 Missense_Mutation p.H553Q 0.12 deleterious(0) probably_damaging(0.977) TCGA-DU-6392-01 8 7308697 7308697 C T SPAG11B Intron 0.14 TCGA-DU-6392-01 8 73849975 73849975 T A KCNB2 Silent p.P795P 0.10 TCGA-DU-6392-01 8 73937122 73937122 C A TERF1 Missense_Mutation p.H230Q 0.11 tolerated(0.08) possibly_damaging(0.724) TCGA-DU-6392-01 8 73982067 73982067 C T SBSPON Missense_Mutation p.C217Y 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 73993338 73993338 C T SBSPON Missense_Mutation p.G109R 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 74203795 74203795 C T RPL7 Missense_Mutation p.R177Q 0.36 tolerated(0.72) benign(0.002) TCGA-DU-6392-01 8 74529527 74529527 C A STAU2 Missense_Mutation p.Q190H 0.24 tolerated(0.11) possibly_damaging(0.466) TCGA-DU-6392-01 8 74650573 74650573 C T STAU2 5'UTR 0.34 TCGA-DU-6392-01 8 75227367 75227367 G A JPH1 Missense_Mutation p.R290C 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 75737401 75737401 C A PI15 Intron 0.13 TCGA-DU-6392-01 8 75929589 75929589 G T CRISPLD1 Missense_Mutation p.G344V 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 76472629 76472629 T C HNF4G Missense_Mutation p.S382P 0.08 tolerated(0.27) benign(0.001) TCGA-DU-6392-01 8 77763428 77763428 C T ZFHX4 Missense_Mutation p.A1424V 0.33 possibly_damaging(0.695) TCGA-DU-6392-01 8 77765105 77765105 G A ZFHX4 Missense_Mutation p.R1983H 0.41 possibly_damaging(0.715) TCGA-DU-6392-01 8 77765762 77765762 T C ZFHX4 Missense_Mutation p.V2202A 0.40 benign(0.197) TCGA-DU-6392-01 8 77766211 77766211 T A ZFHX4 Missense_Mutation p.S2352T 0.09 probably_damaging(0.97) TCGA-DU-6392-01 8 77766653 77766653 C A ZFHX4 Missense_Mutation p.T2499K 0.08 probably_damaging(0.985) TCGA-DU-6392-01 8 77767503 77767503 G T ZFHX4 Missense_Mutation p.E2782D 0.13 benign(0.12) TCGA-DU-6392-01 8 80831363 80831363 C A MRPS28 Missense_Mutation p.R139M 0.12 deleterious(0.02) probably_damaging(0.954) TCGA-DU-6392-01 8 80950356 80950356 G T TPD52 Missense_Mutation p.L224M 0.09 tolerated_low_confidence(0.09) probably_damaging(0.994) TCGA-DU-6392-01 8 80992699 80992699 C T TPD52 5'UTR 0.35 TCGA-DU-6392-01 8 81412269 81412269 C T ZBTB10 Missense_Mutation p.R505W 0.08 deleterious(0.01) benign(0.038) TCGA-DU-6392-01 8 81733613 81733613 C T ZNF704 Missense_Mutation p.A73T 0.39 tolerated(0.54) benign(0.019) TCGA-DU-6392-01 8 8175940 8175940 G A SGK223 Silent p.G1315G 0.42 TCGA-DU-6392-01 8 8176527 8176527 C T SGK223 Missense_Mutation p.V1120M 0.38 probably_damaging(0.999) TCGA-DU-6392-01 8 8185546 8185546 C T SGK223 Missense_Mutation p.A916T 0.31 benign(0.019) TCGA-DU-6392-01 8 81899628 81899628 T G PAG1 Missense_Mutation p.N84T 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 8235357 8235357 C T SGK223 Missense_Mutation p.V188M 0.08 benign(0.004) TCGA-DU-6392-01 8 82359586 82359586 G T PMP2 Silent p.V12V 0.23 TCGA-DU-6392-01 8 82606128 82606128 C G SLC10A5 Silent p.L360L 0.34 TCGA-DU-6392-01 8 86021909 86021909 G A LRRCC1 Missense_Mutation p.D62N 0.13 tolerated(0.28) benign(0.027) TCGA-DU-6392-01 8 86035730 86035730 G A LRRCC1 Missense_Mutation p.G338E 0.44 tolerated(1) benign(0.021) TCGA-DU-6392-01 8 86044046 86044046 C A LRRCC1 Silent p.A606A 0.32 TCGA-DU-6392-01 8 86129663 86129663 G T C8orf59 Missense_Mutation p.N22K 0.29 tolerated(0.94) benign(0.318) TCGA-DU-6392-01 8 86158064 86158064 A T CA13 Missense_Mutation p.R3W 0.25 deleterious(0.01) benign(0.148) TCGA-DU-6392-01 8 87076754 87076754 C A PSKH2 Nonsense_Mutation p.E98* 0.31 TCGA-DU-6392-01 8 87111268 87111268 C T ATP6V0D2 Nonsense_Mutation p.R21* 0.32 TCGA-DU-6392-01 8 87242328 87242328 G A SLC7A13 Missense_Mutation p.A60V 0.11 tolerated(0.14) benign(0.196) TCGA-DU-6392-01 8 87447713 87447713 G A WWP1 Missense_Mutation p.R545H 0.39 deleterious(0.02) benign(0.003) TCGA-DU-6392-01 8 87474066 87474066 G A WWP1 Missense_Mutation p.S887N 0.39 deleterious(0) probably_damaging(0.909) TCGA-DU-6392-01 8 87479030 87479030 C T WWP1 Missense_Mutation p.R893C 0.30 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 8 8747988 8747988 C T MFHAS1 Missense_Mutation p.A861T 0.10 tolerated(0.37) benign(0.003) TCGA-DU-6392-01 8 8748217 8748217 C T MFHAS1 Silent p.Q784Q 0.31 TCGA-DU-6392-01 8 87656038 87656038 C A CNGB3 Missense_Mutation p.W373C 0.11 deleterious(0.01) benign(0.159) TCGA-DU-6392-01 8 88885128 88885128 C T DCAF4L2 Missense_Mutation p.A358T 0.40 tolerated(0.63) benign(0.029) TCGA-DU-6392-01 8 88885738 88885738 G T DCAF4L2 Missense_Mutation p.S154R 0.20 tolerated(0.09) benign(0.096) TCGA-DU-6392-01 8 89053797 89053797 G T MMP16 Silent p.I572I 0.07 TCGA-DU-6392-01 8 90960053 90960053 G A NBN Missense_Mutation p.S638F 0.38 tolerated(0.12) benign(0.009) TCGA-DU-6392-01 8 90993001 90993001 G A NBN Silent p.C147C 0.08 TCGA-DU-6392-01 8 91033202 91033202 G A DECR1 Nonsense_Mutation p.W161* 0.45 TCGA-DU-6392-01 8 91072448 91072448 G A CALB1 Silent p.L247L 0.45 TCGA-DU-6392-01 8 92007812 92007812 G A TMEM55A 3'UTR 0.50 TCGA-DU-6392-01 8 92261829 92261830 - T SLC26A7 5'UTR 0.45 TCGA-DU-6392-01 8 92261894 92261894 G T SLC26A7 Missense_Mutation p.K5N 0.15 deleterious(0) possibly_damaging(0.798) TCGA-DU-6392-01 8 92330558 92330558 C A SLC26A7 Missense_Mutation p.L198I 0.09 tolerated(0.05) probably_damaging(0.998) TCGA-DU-6392-01 8 92352738 92352738 G T SLC26A7 Nonsense_Mutation p.G329* 0.21 TCGA-DU-6392-01 8 92972475 92972475 G A RUNX1T1 Missense_Mutation p.R615C 0.40 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 8 93074924 93074924 C T RUNX1T1 Intron 0.44 TCGA-DU-6392-01 8 94748355 94748355 C T RBM12B Missense_Mutation p.R95H 0.34 tolerated(0.06) probably_damaging(0.996) TCGA-DU-6392-01 8 94793134 94793134 A G TMEM67 Missense_Mutation p.D301G 0.34 deleterious(0.01) benign(0.122) TCGA-DU-6392-01 8 94934696 94934696 G T PDP1 Missense_Mutation p.G162W 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 95189855 95189855 C T CDH17 Missense_Mutation p.R82K 0.44 tolerated(1) benign(0.001) TCGA-DU-6392-01 8 95412549 95412549 G A RAD54B Missense_Mutation p.P363S 0.13 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 8 95470649 95470649 T C RAD54B Missense_Mutation p.N51D 0.09 tolerated_low_confidence(0.6) benign(0.002) TCGA-DU-6392-01 8 95531688 95531688 G A KIAA1429 Missense_Mutation p.H680Y 0.15 deleterious(0.03) possibly_damaging(0.788) TCGA-DU-6392-01 8 95877901 95877901 G A INTS8 Silent p.T748T 0.35 TCGA-DU-6392-01 8 97345702 97345702 C T PTDSS1 Missense_Mutation p.P444S 0.39 tolerated(0.66) benign(0.039) TCGA-DU-6392-01 8 97847315 97847315 C T CPQ Missense_Mutation p.T183M 0.28 deleterious(0.01) possibly_damaging(0.849) TCGA-DU-6392-01 8 98735147 98735147 C A MTDH Missense_Mutation p.S521Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 8 99168368 99168368 G A POP1 Silent p.E716E 0.35 TCGA-DU-6392-01 8 99440410 99440410 A G KCNS2 Missense_Mutation p.E68G 0.36 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 8 99718840 99718840 G A STK3 Missense_Mutation p.T208I 0.06 deleterious(0) possibly_damaging(0.685) TCGA-DU-6392-01 9 100079447 100079447 G A CCDC180 Missense_Mutation p.R343H 0.34 deleterious(0.02) possibly_damaging(0.556) TCGA-DU-6392-01 9 100085191 100085191 G A CCDC180 Silent p.V456V 0.46 TCGA-DU-6392-01 9 100088895 100088895 A C CCDC180 Missense_Mutation p.E579D 0.07 tolerated(0.15) benign(0.045) TCGA-DU-6392-01 9 100193223 100193223 C T TDRD7 Silent p.C72C 0.08 TCGA-DU-6392-01 9 100204072 100204072 T C TDRD7 Missense_Mutation p.L257P 0.40 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 100222971 100222971 C A TDRD7 Missense_Mutation p.P456H 0.50 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 100407398 100407398 G T NCBP1 Splice_Site p.X128_splice 0.42 TCGA-DU-6392-01 9 100667245 100667246 - A C9orf156 Frame_Shift_Ins p.Q366Sfs*11 0.25 TCGA-DU-6392-01 9 100672556 100672556 G A C9orf156 Missense_Mutation p.A251V 0.09 tolerated(0.21) benign(0.001) TCGA-DU-6392-01 9 100693430 100693430 C T HEMGN Missense_Mutation p.E83K 0.29 tolerated(0.17) benign(0.006) TCGA-DU-6392-01 9 100897184 100897184 G A CORO2A Silent p.Y124Y 0.09 TCGA-DU-6392-01 9 100961719 100961719 G A TBC1D2 Missense_Mutation p.R900C 0.13 deleterious(0.05) benign(0.429) TCGA-DU-6392-01 9 101068592 101068592 G A GABBR2 Silent p.N680N 0.37 TCGA-DU-6392-01 9 101518861 101518861 G A ANKS6 Missense_Mutation p.P723S 0.44 tolerated(0.4) benign(0.031) TCGA-DU-6392-01 9 101530377 101530377 C T ANKS6 Missense_Mutation p.A710T 0.50 tolerated(0.56) benign(0.001) TCGA-DU-6392-01 9 101536295 101536295 A G ANKS6 Missense_Mutation p.L562P 0.09 deleterious(0.01) probably_damaging(0.973) TCGA-DU-6392-01 9 101552558 101552558 C T ANKS6 Missense_Mutation p.M230I 0.36 deleterious(0.02) possibly_damaging(0.715) TCGA-DU-6392-01 9 101599426 101599426 G A GALNT12 Missense_Mutation p.R403H 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 9 101611353 101611353 C A GALNT12 Missense_Mutation p.F575L 0.37 tolerated(0.64) benign(0.008) TCGA-DU-6392-01 9 101748295 101748295 C T COL15A1 Silent p.S183S 0.43 TCGA-DU-6392-01 9 103027136 103027136 T C INVS Silent p.N499N 0.40 TCGA-DU-6392-01 9 103054731 103054731 G A INVS Missense_Mutation p.G731D 0.18 tolerated_low_confidence(0.12) benign(0.005) TCGA-DU-6392-01 9 103092422 103092422 T C TEX10 Missense_Mutation p.N427S 0.46 tolerated(0.88) benign(0.002) TCGA-DU-6392-01 9 103109222 103109222 C T TEX10 Missense_Mutation p.R216Q 0.35 tolerated(0.13) possibly_damaging(0.679) TCGA-DU-6392-01 9 103109555 103109555 G A TEX10 Missense_Mutation p.A105V 0.09 deleterious(0.01) probably_damaging(0.914) TCGA-DU-6392-01 9 103111563 103111563 G A TEX10 Missense_Mutation p.A28V 0.31 tolerated(0.34) benign(0.013) TCGA-DU-6392-01 9 103338803 103338803 G A TMEFF1 Missense_Mutation p.C355Y 0.43 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 9 104171082 104171082 T A ZNF189 Missense_Mutation p.F344L 0.11 deleterious(0) benign(0.427) TCGA-DU-6392-01 9 104193166 104193166 C T ALDOB Missense_Mutation p.A2T 0.28 tolerated(1) benign(0.006) TCGA-DU-6392-01 9 104238081 104238081 G A TMEM246 3'UTR 0.67 TCGA-DU-6392-01 9 104238794 104238794 C T TMEM246 Missense_Mutation p.C194Y 0.16 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 9 104239238 104239238 A G TMEM246 Missense_Mutation p.L46P 0.11 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 9 104335397 104335397 A C GRIN3A 3'UTR 0.14 TCGA-DU-6392-01 9 104432710 104432710 T C GRIN3A Missense_Mutation p.T662A 0.07 deleterious(0.03) possibly_damaging(0.462) TCGA-DU-6392-01 9 106877012 106877012 C T SMC2 Missense_Mutation p.L525F 0.11 deleterious(0.03) benign(0.345) TCGA-DU-6392-01 9 106880543 106880543 T G SMC2 Missense_Mutation p.F628C 0.09 deleterious(0) possibly_damaging(0.596) TCGA-DU-6392-01 9 106887381 106887381 C T SMC2 Nonsense_Mutation p.Q816* 0.35 TCGA-DU-6392-01 9 107267193 107267193 C A OR13F1 Missense_Mutation p.S217Y 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 107367204 107367204 G A OR13C2 Silent p.S235S 0.44 TCGA-DU-6392-01 9 107380071 107380071 T G OR13C9 Missense_Mutation p.N139H 0.42 tolerated(0.12) benign(0.002) TCGA-DU-6392-01 9 107546492 107546492 C A ABCA1 3'UTR 0.12 TCGA-DU-6392-01 9 107555451 107555451 C A ABCA1 Splice_Site p.X1879_splice 0.34 TCGA-DU-6392-01 9 107581161 107581161 C T ABCA1 Missense_Mutation p.R1082H 0.42 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 9 108110667 108110667 G T SLC44A1 Missense_Mutation p.K145N 0.40 tolerated(1) benign(0.001) TCGA-DU-6392-01 9 108120657 108120657 T C SLC44A1 Missense_Mutation p.Y235H 0.40 deleterious(0) probably_damaging(0.968) TCGA-DU-6392-01 9 108120689 108120689 G A SLC44A1 Silent p.T245T 0.35 TCGA-DU-6392-01 9 108380347 108380347 C T FKTN Missense_Mutation p.L340F 0.40 tolerated(0.05) possibly_damaging(0.794) TCGA-DU-6392-01 9 108382276 108382276 T A FKTN Missense_Mutation p.F369Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 9 108483913 108483913 G A TMEM38B Missense_Mutation p.R122K 0.32 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 108536258 108536258 G T TMEM38B Missense_Mutation p.S258I 0.30 tolerated(0.12) benign(0.169) TCGA-DU-6392-01 9 109686747 109686747 A G ZNF462 Missense_Mutation p.H185R 0.24 benign(0.227) TCGA-DU-6392-01 9 109687614 109687614 A G ZNF462 Missense_Mutation p.E474G 0.27 benign(0.403) TCGA-DU-6392-01 9 109689801 109689801 G T ZNF462 Missense_Mutation p.R1203L 0.40 possibly_damaging(0.776) TCGA-DU-6392-01 9 109690567 109690567 A G ZNF462 Silent p.L1458L 0.20 TCGA-DU-6392-01 9 109690956 109690956 C T ZNF462 Missense_Mutation p.T1588I 0.34 probably_damaging(0.994) TCGA-DU-6392-01 9 110248007 110248007 G A KLF4 3'UTR 0.07 TCGA-DU-6392-01 9 110250325 110250325 G A KLF4 Missense_Mutation p.P117L 0.38 deleterious(0.03) benign(0.036) TCGA-DU-6392-01 9 111617534 111617534 C T ACTL7B Missense_Mutation p.G226E 0.46 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 111617633 111617633 G A ACTL7B Missense_Mutation p.S193L 0.13 deleterious(0) benign(0.355) TCGA-DU-6392-01 9 111674654 111674654 T C IKBKAP Missense_Mutation p.H360R 0.14 deleterious(0) probably_damaging(0.964) TCGA-DU-6392-01 9 111693479 111693479 T C IKBKAP Intron 0.12 TCGA-DU-6392-01 9 111732743 111732743 G A CTNNAL1 Missense_Mutation p.T460I 0.16 deleterious(0) possibly_damaging(0.575) TCGA-DU-6392-01 9 111979388 111979388 G A EPB41L4B Missense_Mutation p.R483W 0.35 deleterious(0.05) possibly_damaging(0.719) TCGA-DU-6392-01 9 112166788 112166788 C A PTPN3 Missense_Mutation p.E631D 0.11 tolerated(0.05) benign(0.048) TCGA-DU-6392-01 9 112899207 112899207 C T PALM2-AKAP2 Silent p.A461A 0.28 TCGA-DU-6392-01 9 112899576 112899576 G A PALM2-AKAP2 Silent p.K584K 0.33 TCGA-DU-6392-01 9 112899787 112899787 C T PALM2-AKAP2 Missense_Mutation p.R655C 0.49 tolerated(0.12) benign(0.209) TCGA-DU-6392-01 9 113132260 113132260 C T SVEP1 Missense_Mutation p.C3546Y 0.47 probably_damaging(0.984) TCGA-DU-6392-01 9 113168817 113168817 A C SVEP1 Missense_Mutation p.D3021E 0.46 benign(0.226) TCGA-DU-6392-01 9 113170044 113170044 G A SVEP1 Silent p.D2612D 0.39 TCGA-DU-6392-01 9 113212497 113212497 T G SVEP1 Silent p.P1315P 0.41 TCGA-DU-6392-01 9 113234560 113234560 G A SVEP1 Silent p.Y881Y 0.40 TCGA-DU-6392-01 9 113312385 113312385 C A SVEP1 Splice_Site p.X178_splice 0.10 TCGA-DU-6392-01 9 113509925 113509925 C A MUSK Missense_Mutation p.S253Y 0.45 deleterious(0.03) probably_damaging(0.936) TCGA-DU-6392-01 9 114089774 114089774 C T OR2K2 Missense_Mutation p.E314K 0.31 tolerated(0.89) benign(0.001) TCGA-DU-6392-01 9 114154072 114154072 A G KIAA0368 Missense_Mutation p.V1220A 0.28 deleterious(0) benign(0.281) TCGA-DU-6392-01 9 114176796 114176796 C A KIAA0368 Missense_Mutation p.A812S 0.30 tolerated_low_confidence(0.71) benign(0.001) TCGA-DU-6392-01 9 114190321 114190321 C T KIAA0368 Splice_Site p.X528_splice 0.54 TCGA-DU-6392-01 9 114195561 114195561 C T KIAA0368 Missense_Mutation p.R445H 0.48 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 114289834 114289834 G A ZNF483 Silent p.Q53Q 0.36 TCGA-DU-6392-01 9 114456636 114456636 T - C9orf84 Frame_Shift_Del p.I1000Lfs*5 0.09 TCGA-DU-6392-01 9 114467552 114467552 C T C9orf84 Missense_Mutation p.D880N 0.17 tolerated(0.06) benign(0.108) TCGA-DU-6392-01 9 114518719 114518719 G T C9orf84 Missense_Mutation p.P186T 0.11 tolerated(1) benign(0.001) TCGA-DU-6392-01 9 114543212 114543212 C A C9orf84 Missense_Mutation p.E21D 0.10 deleterious(0.03) possibly_damaging(0.689) TCGA-DU-6392-01 9 114695147 114695147 C T UGCG Missense_Mutation p.A352V 0.28 tolerated(0.07) possibly_damaging(0.465) TCGA-DU-6392-01 9 114860832 114860832 C T SUSD1 Silent p.T464T 0.36 TCGA-DU-6392-01 9 114874116 114874116 G A SUSD1 Missense_Mutation p.S330F 0.14 tolerated(0.25) benign(0.041) TCGA-DU-6392-01 9 114886614 114886614 A C SUSD1 Missense_Mutation p.F270C 0.37 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 9 114997178 114997178 C A PTBP3 Splice_Site p.X302_splice 0.39 TCGA-DU-6392-01 9 115336718 115336718 T C KIAA1958 Missense_Mutation p.C120R 0.40 deleterious(0) possibly_damaging(0.902) TCGA-DU-6392-01 9 115422292 115422292 C T KIAA1958 Silent p.T698T 0.37 TCGA-DU-6392-01 9 115451815 115451815 C T INIP Missense_Mutation p.A71T 0.34 deleterious(0.03) benign(0.051) TCGA-DU-6392-01 9 115651934 115651934 C T SLC46A2 Missense_Mutation p.R343H 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 115760310 115760310 G A ZNF883 RNA 0.31 TCGA-DU-6392-01 9 115806439 115806439 G A ZFP37 Silent p.D153D 0.40 TCGA-DU-6392-01 9 115932853 115932853 C T FKBP15 Silent p.E905E 0.27 TCGA-DU-6392-01 9 115959295 115959295 C A FKBP15 Missense_Mutation p.A261S 0.46 tolerated(0.46) benign(0.052) TCGA-DU-6392-01 9 116050475 116050475 T C PRPF4 Missense_Mutation p.I319T 0.29 deleterious(0) possibly_damaging(0.528) TCGA-DU-6392-01 9 116085392 116085392 C T WDR31 Missense_Mutation p.R123H 0.18 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 116130640 116130640 C T BSPRY Missense_Mutation p.T220M 0.31 deleterious(0) benign(0.429) TCGA-DU-6392-01 9 116136318 116136318 C A HDHD3 Missense_Mutation p.S106I 0.13 tolerated(0.06) possibly_damaging(0.679) TCGA-DU-6392-01 9 116150607 116150607 C A ALAD Missense_Mutation p.Q322H 0.12 tolerated(0.12) benign(0.011) TCGA-DU-6392-01 9 116150638 116150638 G T ALAD Missense_Mutation p.A312D 0.10 deleterious(0) probably_damaging(0.933) TCGA-DU-6392-01 9 116154459 116154459 C T ALAD Intron 0.48 TCGA-DU-6392-01 9 116191520 116191520 G T C9orf43 Missense_Mutation p.A414S 0.10 tolerated(0.49) benign(0.038) TCGA-DU-6392-01 9 116267769 116267769 C T RGS3 Silent p.C315C 0.45 TCGA-DU-6392-01 9 116285291 116285291 C A RGS3 Missense_Mutation p.L614I 0.12 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 9 116346234 116346234 G A RGS3 Missense_Mutation p.A848T 0.32 tolerated_low_confidence(0.11) benign(0.045) TCGA-DU-6392-01 9 116346483 116346483 C T RGS3 Silent p.L931L 0.40 TCGA-DU-6392-01 9 116346600 116346600 G A RGS3 Missense_Mutation p.A970T 0.42 tolerated(0.72) benign(0.003) TCGA-DU-6392-01 9 116359132 116359132 C T RGS3 Missense_Mutation p.R1166C 0.30 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 116750643 116750643 C T ZNF618 Silent p.G40G 0.41 TCGA-DU-6392-01 9 116811240 116811240 G A ZNF618 Missense_Mutation p.C460Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 116811954 116811954 C T ZNF618 Missense_Mutation p.A698V 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-DU-6392-01 9 116838953 116838953 C A AMBP Missense_Mutation p.R62M 0.36 deleterious(0.01) probably_damaging(0.935) TCGA-DU-6392-01 9 116854674 116854674 C A KIF12 Missense_Mutation p.E447D 0.09 deleterious_low_confidence(0.01) benign(0.427) TCGA-DU-6392-01 9 116999977 116999977 C T COL27A1 Silent p.P903P 0.46 TCGA-DU-6392-01 9 117021 117021 G A FOXD4 Missense_Mutation p.R367W 0.17 deleterious_low_confidence(0) benign(0.016) TCGA-DU-6392-01 9 117188682 117188682 C A DFNB31 Missense_Mutation p.Q325H 0.14 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 117555845 117555845 G T TNFSF15 Missense_Mutation p.L72I 0.12 tolerated(0.2) benign(0.001) TCGA-DU-6392-01 9 117692400 117692400 C T TNFSF8 Missense_Mutation p.V62I 0.29 tolerated(0.13) possibly_damaging(0.545) TCGA-DU-6392-01 9 117783498 117783498 C T TNC Missense_Mutation p.A2182T 0.14 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 117791675 117791675 C T TNC Missense_Mutation p.A2045T 0.42 tolerated(0.15) benign(0.192) TCGA-DU-6392-01 9 117819616 117819616 G A TNC Silent p.F1465F 0.35 TCGA-DU-6392-01 9 117825213 117825213 G A TNC Missense_Mutation p.A1339V 0.46 tolerated(0.34) benign(0.002) TCGA-DU-6392-01 9 117840388 117840388 G T TNC Silent p.T836T 0.34 TCGA-DU-6392-01 9 119065179 119065179 G A PAPPA Missense_Mutation p.D1033N 0.39 tolerated(0.07) possibly_damaging(0.539) TCGA-DU-6392-01 9 119093569 119093569 A C PAPPA Missense_Mutation p.H1065P 0.08 tolerated(0.34) benign(0.227) TCGA-DU-6392-01 9 120476943 120476943 C A TLR4 3'UTR 0.37 TCGA-DU-6392-01 9 121930124 121930124 G A BRINP1 Silent p.N508N 0.42 TCGA-DU-6392-01 9 121976432 121976432 A G BRINP1 Silent p.G229G 0.28 TCGA-DU-6392-01 9 123370192 123370192 C T MEGF9 Missense_Mutation p.S395N 0.34 deleterious(0.03) probably_damaging(0.995) TCGA-DU-6392-01 9 123722524 123722524 A G C5 Splice_Site p.X1560_splice 0.14 TCGA-DU-6392-01 9 123732462 123732462 G A C5 Missense_Mutation p.T1383I 0.36 tolerated(0.47) benign(0.002) TCGA-DU-6392-01 9 123744139 123744139 C T C5 Missense_Mutation p.D1157N 0.40 tolerated(0.5) benign(0.072) TCGA-DU-6392-01 9 123783855 123783855 G A C5 Missense_Mutation p.R412C 0.43 deleterious(0.01) possibly_damaging(0.489) TCGA-DU-6392-01 9 123794416 123794416 G A C5 Silent p.T214T 0.36 TCGA-DU-6392-01 9 123886325 123886325 G A CNTRL Silent p.T589T 0.47 TCGA-DU-6392-01 9 123935588 123935588 C A CNTRL Missense_Mutation p.S2162Y 0.08 benign(0.002) TCGA-DU-6392-01 9 123943691 123943691 C A RAB14 Nonsense_Mutation p.E211* 0.09 TCGA-DU-6392-01 9 123949285 123949285 A G RAB14 Silent p.Y99Y 0.08 TCGA-DU-6392-01 9 123952957 123952957 G A RAB14 Silent p.I53I 0.32 TCGA-DU-6392-01 9 124079496 124079496 G A GSN Missense_Mutation p.G347S 0.33 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 124111498 124111498 G A STOM Missense_Mutation p.A142V 0.36 deleterious(0.02) possibly_damaging(0.57) TCGA-DU-6392-01 9 124522547 124522547 C T DAB2IP Silent p.R305R 0.31 TCGA-DU-6392-01 9 124525895 124525895 C T DAB2IP Silent p.L400L 0.28 TCGA-DU-6392-01 9 124936902 124936902 C T MORN5 Silent p.N145N 0.45 TCGA-DU-6392-01 9 125154616 125154616 G T PTGS1 Missense_Mutation p.K531N 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 125239577 125239577 G A OR1J1 Missense_Mutation p.P210L 0.11 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-DU-6392-01 9 125273822 125273822 G A OR1J2 Missense_Mutation p.V248M 0.35 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DU-6392-01 9 125289054 125289054 A G OR1N1 Silent p.A173A 0.28 TCGA-DU-6392-01 9 125315826 125315826 C T OR1N2 Silent p.G126G 0.38 TCGA-DU-6392-01 9 125377139 125377139 C T OR1Q1 Silent p.G41G 0.07 TCGA-DU-6392-01 9 125437739 125437739 G T OR1L3 Missense_Mutation p.D111Y 0.32 deleterious(0) probably_damaging(0.968) TCGA-DU-6392-01 9 125486357 125486357 C T OR1L4 Missense_Mutation p.A30V 0.44 tolerated(0.55) benign(0.005) TCGA-DU-6392-01 9 125563230 125563230 G A OR1K1 Missense_Mutation p.V277I 0.46 tolerated(0.13) benign(0.012) TCGA-DU-6392-01 9 125618095 125618095 C T RC3H2 Nonsense_Mutation p.W839* 0.41 TCGA-DU-6392-01 9 125680725 125680725 T C ZBTB26 3'UTR 0.19 TCGA-DU-6392-01 9 125719414 125719414 G A RABGAP1 Missense_Mutation p.V26I 0.41 tolerated(0.23) probably_damaging(0.956) TCGA-DU-6392-01 9 125748528 125748528 C T RABGAP1 Silent p.A140A 0.34 TCGA-DU-6392-01 9 125751629 125751629 T G RABGAP1 Missense_Mutation p.I215S 0.10 deleterious(0) benign(0.396) TCGA-DU-6392-01 9 125797635 125797635 C A GPR21 Missense_Mutation p.L264I 0.31 tolerated(0.1) probably_damaging(0.962) TCGA-DU-6392-01 9 126125293 126125293 T C CRB2 Missense_Mutation p.C82R 0.27 deleterious(0) benign(0.035) TCGA-DU-6392-01 9 126125435 126125435 G A CRB2 Missense_Mutation p.R129H 0.32 tolerated(0.54) unknown(0) TCGA-DU-6392-01 9 126132729 126132729 G A CRB2 Missense_Mutation p.R466H 0.41 deleterious(0) possibly_damaging(0.812) TCGA-DU-6392-01 9 126146102 126146102 G A DENND1A Silent p.G556G 0.32 TCGA-DU-6392-01 9 126371738 126371738 C A DENND1A Nonsense_Mutation p.G248* 0.09 TCGA-DU-6392-01 9 126520032 126520032 G A DENND1A Silent p.F84F 0.46 TCGA-DU-6392-01 9 12695729 12695729 C T TYRP1 Silent p.F200F 0.33 TCGA-DU-6392-01 9 12702354 12702354 G A TYRP1 Missense_Mutation p.V333I 0.35 tolerated(0.2) benign(0.319) TCGA-DU-6392-01 9 127245118 127245118 C A NR5A1 Missense_Mutation p.E435D 0.36 tolerated(0.39) benign(0.041) TCGA-DU-6392-01 9 127298239 127298239 G T NR6A1 Missense_Mutation p.L333I 0.10 tolerated(0.42) benign(0.046) TCGA-DU-6392-01 9 127620260 127620260 C A RPL35 Missense_Mutation p.K103N 0.14 deleterious(0) benign(0.232) TCGA-DU-6392-01 9 127674201 127674201 G A GOLGA1 Silent p.H316H 0.09 TCGA-DU-6392-01 9 127765751 127765751 C T SCAI Missense_Mutation p.M343I 0.08 tolerated(0.4) benign(0.001) TCGA-DU-6392-01 9 128124975 128124975 C T GAPVD1 Nonsense_Mutation p.Q1472* 0.47 TCGA-DU-6392-01 9 128305420 128305420 A G MAPKAP1 Silent p.I292I 0.14 TCGA-DU-6392-01 9 129596169 129596169 C T ZBTB43 Nonsense_Mutation p.Q461* 0.37 TCGA-DU-6392-01 9 129643140 129643140 A G ZBTB34 Missense_Mutation p.M484V 0.19 tolerated_low_confidence(1) benign(0) TCGA-DU-6392-01 9 129937013 129937013 C T RALGPS1 Missense_Mutation p.P288S 0.37 deleterious(0) probably_damaging(0.985) TCGA-DU-6392-01 9 130027191 130027191 G T GARNL3 Missense_Mutation p.R12I 0.09 tolerated_low_confidence(0.15) benign(0.003) TCGA-DU-6392-01 9 130083004 130083004 C A GARNL3 Missense_Mutation p.L172M 0.24 tolerated(0.4) benign(0.139) TCGA-DU-6392-01 9 130207444 130207444 G A ZNF79 Missense_Mutation p.V489I 0.36 tolerated(0.84) benign(0) TCGA-DU-6392-01 9 130259537 130259537 C T LRSAM1 Silent p.G612G 0.35 TCGA-DU-6392-01 9 130444731 130444731 C T STXBP1 Missense_Mutation p.R532C 0.45 deleterious(0) possibly_damaging(0.891) TCGA-DU-6392-01 9 130493461 130493461 G A TTC16 Missense_Mutation p.R800Q 0.14 tolerated(0.25) benign(0.073) TCGA-DU-6392-01 9 130493506 130493506 T A TTC16 Missense_Mutation p.L815H 0.32 tolerated(0.23) possibly_damaging(0.619) TCGA-DU-6392-01 9 130495551 130495551 C T TOR2A Intron 0.31 TCGA-DU-6392-01 9 130653134 130653134 G A ST6GALNAC6 Silent p.F162F 0.36 TCGA-DU-6392-01 9 130868649 130868649 G T SLC25A25 Missense_Mutation p.M342I 0.11 deleterious(0) benign(0.125) TCGA-DU-6392-01 9 130931346 130931346 C T CIZ1 Silent p.E760E 0.39 TCGA-DU-6392-01 9 130941595 130941595 G T CIZ1 Missense_Mutation p.D297E 0.41 tolerated(1) benign(0.003) TCGA-DU-6392-01 9 131019676 131019676 C A GOLGA2 Missense_Mutation p.Q922H 0.48 deleterious(0.03) benign(0.046) TCGA-DU-6392-01 9 131022831 131022831 G A GOLGA2 Silent p.N530N 0.41 TCGA-DU-6392-01 9 131029534 131029534 G A GOLGA2 Missense_Mutation p.A167V 0.46 deleterious(0.01) probably_damaging(0.947) TCGA-DU-6392-01 9 13107046 13107046 C A MPDZ Missense_Mutation p.S2015I 0.30 deleterious(0.02) possibly_damaging(0.891) TCGA-DU-6392-01 9 131185490 131185490 T A CERCAM Missense_Mutation p.L125Q 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 13119520 13119520 G A MPDZ Missense_Mutation p.A1787V 0.14 tolerated(0.1) benign(0.111) TCGA-DU-6392-01 9 13122139 13122139 C T MPDZ Missense_Mutation p.E1662K 0.24 deleterious(0.02) possibly_damaging(0.828) TCGA-DU-6392-01 9 131456919 131456919 G T SET Splice_Site p.X284_splice 0.08 TCGA-DU-6392-01 9 131479061 131479061 G A PKN3 Missense_Mutation p.G615D 0.45 tolerated(0.07) possibly_damaging(0.737) TCGA-DU-6392-01 9 131484064 131484064 G A ZDHHC12 Silent p.C116C 0.40 TCGA-DU-6392-01 9 131502228 131502228 C T ZER1 Missense_Mutation p.R675Q 0.37 tolerated(0.12) benign(0.091) TCGA-DU-6392-01 9 131559450 131559450 T G TBC1D13 Missense_Mutation p.L167R 0.40 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 9 131591120 131591120 T - C9orf114 Frame_Shift_Del p.K34Nfs*7 0.36 TCGA-DU-6392-01 9 131597777 131597777 G A CCBL1 Missense_Mutation p.T342I 0.38 deleterious(0.03) benign(0.008) TCGA-DU-6392-01 9 131605002 131605002 G A CCBL1 Silent p.D44D 0.38 TCGA-DU-6392-01 9 131671556 131671556 G A LRRC8A Missense_Mutation p.G705S 0.47 tolerated(0.07) possibly_damaging(0.837) TCGA-DU-6392-01 9 13168512 13168512 A G MPDZ Missense_Mutation p.I1036T 0.41 deleterious(0) possibly_damaging(0.885) TCGA-DU-6392-01 9 131704018 131704018 G A PHYHD1 Missense_Mutation p.A294T 0.31 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-DU-6392-01 9 131708454 131708454 G A DOLK Missense_Mutation p.R377C 0.37 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 131744902 131744902 C T NUP188 Missense_Mutation p.R531C 0.40 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 9 131760483 131760483 C T NUP188 Silent p.D1135D 0.35 TCGA-DU-6392-01 9 131823542 131823542 G A FAM73B Silent p.P309P 0.44 TCGA-DU-6392-01 9 131898769 131898769 A G PPP2R4 Missense_Mutation p.K194E 0.36 deleterious(0) benign(0.431) TCGA-DU-6392-01 9 132374652 132374652 C T C9orf50 Missense_Mutation p.A424T 0.31 tolerated(1) benign(0) TCGA-DU-6392-01 9 132404200 132404200 T C ASB6 Missense_Mutation p.I27V 0.38 tolerated_low_confidence(0.1) benign(0.002) TCGA-DU-6392-01 9 132569618 132569618 G A TOR1B Missense_Mutation p.R206H 0.37 deleterious(0.02) benign(0.246) TCGA-DU-6392-01 9 132571244 132571244 G A TOR1B Silent p.K234K 0.38 TCGA-DU-6392-01 9 132584875 132584875 G A TOR1A Silent p.N143N 0.12 TCGA-DU-6392-01 9 132595800 132595800 C T C9orf78 Intron 0.08 TCGA-DU-6392-01 9 132630508 132630508 G A USP20 Silent p.S305S 0.35 TCGA-DU-6392-01 9 132632081 132632081 C G USP20 Missense_Mutation p.A508G 0.34 tolerated(0.19) benign(0.032) TCGA-DU-6392-01 9 132636916 132636916 G T USP20 Missense_Mutation p.S601I 0.26 deleterious(0.01) possibly_damaging(0.58) TCGA-DU-6392-01 9 132662789 132662789 C T FNBP1 Missense_Mutation p.R489H 0.56 tolerated(0.07) benign(0.411) TCGA-DU-6392-01 9 132719709 132719709 G A FNBP1 Missense_Mutation p.A148V 0.53 deleterious(0.01) possibly_damaging(0.509) TCGA-DU-6392-01 9 132740835 132740835 C T FNBP1 Missense_Mutation p.G85E 0.40 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 9 132980151 132980151 G A NCS1 Missense_Mutation p.D44N 0.44 tolerated(0.53) benign(0.001) TCGA-DU-6392-01 9 133376508 133376508 C T ASS1 3'UTR 0.45 TCGA-DU-6392-01 9 133491792 133491792 C A FUBP3 Missense_Mutation p.P152H 0.31 deleterious(0) benign(0.396) TCGA-DU-6392-01 9 133753948 133753948 C T ABL1 Nonsense_Mutation p.R492* 0.44 TCGA-DU-6392-01 9 133760330 133760330 C T ABL1 Missense_Mutation p.P904S 0.25 tolerated_low_confidence(0.79) probably_damaging(0.998) TCGA-DU-6392-01 9 133761036 133761036 C T ABL1 Missense_Mutation p.S1139L 0.48 deleterious_low_confidence(0.02) probably_damaging(0.978) TCGA-DU-6392-01 9 134021675 134021675 C A NUP214 Silent p.V643V 0.06 TCGA-DU-6392-01 9 134049645 134049645 G T NUP214 Missense_Mutation p.A1033S 0.10 benign(0) TCGA-DU-6392-01 9 134074037 134074037 G A NUP214 Missense_Mutation p.G1719E 0.27 possibly_damaging(0.703) TCGA-DU-6392-01 9 134351859 134351859 G T PRRC2B Missense_Mutation p.G1448V 0.20 deleterious(0) possibly_damaging(0.821) TCGA-DU-6392-01 9 134354638 134354638 G T PRRC2B Splice_Site p.X1587_splice 0.39 TCGA-DU-6392-01 9 134385314 134385314 G A POMT1 Silent p.T210T 0.34 TCGA-DU-6392-01 9 134398374 134398374 G A POMT1 Missense_Mutation p.A709T 0.57 deleterious(0.03) benign(0.194) TCGA-DU-6392-01 9 134404364 134404364 G A UCK1 Silent p.F195F 0.36 TCGA-DU-6392-01 9 134404542 134404542 C T UCK1 Missense_Mutation p.D166N 0.47 deleterious(0.02) probably_damaging(0.951) TCGA-DU-6392-01 9 134497224 134497224 G T RAPGEF1 Missense_Mutation p.L623M 0.35 tolerated(0.18) benign(0.06) TCGA-DU-6392-01 9 135073845 135073845 C T NTNG2 Missense_Mutation p.R236W 0.31 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 9 135163640 135163640 C A SETX Missense_Mutation p.G2103C 0.13 tolerated(0.27) benign(0.232) TCGA-DU-6392-01 9 135204624 135204624 G T SETX Silent p.I787I 0.08 TCGA-DU-6392-01 9 135277278 135277278 G A TTF1 Missense_Mutation p.R311W 0.40 tolerated_low_confidence(0.12) benign(0.252) TCGA-DU-6392-01 9 135776205 135776205 A G TSC1 Missense_Mutation p.V841A 0.41 deleterious(0.01) benign(0.379) TCGA-DU-6392-01 9 135786628 135786628 C T TSC1 Intron 0.09 TCGA-DU-6392-01 9 135926232 135926232 G A GTF3C5 Missense_Mutation p.R212H 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 135926284 135926284 G T GTF3C5 Missense_Mutation p.Q229H 0.44 deleterious(0.03) benign(0.039) TCGA-DU-6392-01 9 135929296 135929296 C T GTF3C5 Missense_Mutation p.L319F 0.42 deleterious(0.01) probably_damaging(0.977) TCGA-DU-6392-01 9 135929816 135929816 C T GTF3C5 Missense_Mutation p.P337L 0.39 tolerated(0.08) possibly_damaging(0.736) TCGA-DU-6392-01 9 135974142 135974142 C T RALGDS Silent p.K859K 0.22 TCGA-DU-6392-01 9 135983469 135983469 G T RALGDS Missense_Mutation p.P368H 0.38 tolerated(0.13) unknown(0) TCGA-DU-6392-01 9 136227955 136227955 G T SURF2 Missense_Mutation p.K237N 0.38 probably_damaging(0.937) TCGA-DU-6392-01 9 136282769 136282769 A C REXO4 Missense_Mutation p.F66V 0.12 deleterious(0.04) possibly_damaging(0.831) TCGA-DU-6392-01 9 136324099 136324099 C T ADAMTS13 Missense_Mutation p.R1361W 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-DU-6392-01 9 136401795 136401795 C T ADAMTSL2 5'UTR 0.35 TCGA-DU-6392-01 9 136406006 136406006 G A ADAMTSL2 Missense_Mutation p.G189S 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 136412159 136412159 G C ADAMTSL2 Splice_Site p.X255_splice 0.32 TCGA-DU-6392-01 9 136505010 136505010 C T DBH Nonsense_Mutation p.Q128* 0.36 TCGA-DU-6392-01 9 136531992 136531992 G A SARDH Silent p.D832D 0.50 TCGA-DU-6392-01 9 136568090 136568090 C T SARDH Missense_Mutation p.R539H 0.25 tolerated(0.35) benign(0.172) TCGA-DU-6392-01 9 136629174 136629174 G A VAV2 3'UTR 0.45 TCGA-DU-6392-01 9 136661642 136661642 C T VAV2 Missense_Mutation p.C314Y 0.42 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 136901379 136901379 G A BRD3 Missense_Mutation p.P571S 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-DU-6392-01 9 136901413 136901413 G T BRD3 Silent p.A559A 0.09 TCGA-DU-6392-01 9 136906967 136906967 C T BRD3 Missense_Mutation p.R441H 0.22 tolerated(0.06) benign(0) TCGA-DU-6392-01 9 137020812 137020812 C A WDR5 Intron 0.12 TCGA-DU-6392-01 9 137591761 137591761 C T COL5A1 Missense_Mutation p.A95V 0.41 benign(0.05) TCGA-DU-6392-01 9 137593154 137593154 G A COL5A1 Missense_Mutation p.R210Q 0.32 probably_damaging(0.992) TCGA-DU-6392-01 9 138011443 138011443 C T OLFM1 Missense_Mutation p.R275C 0.39 tolerated(0.17) probably_damaging(0.965) TCGA-DU-6392-01 9 138378029 138378029 G A PPP1R26 Missense_Mutation p.C558Y 0.30 tolerated(0.94) benign(0.064) TCGA-DU-6392-01 9 138378993 138378993 G A PPP1R26 Silent p.R879R 0.39 TCGA-DU-6392-01 9 138379220 138379220 G T PPP1R26 Missense_Mutation p.R955M 0.41 deleterious(0) probably_damaging(0.919) TCGA-DU-6392-01 9 138379302 138379302 C T PPP1R26 Silent p.S982S 0.56 TCGA-DU-6392-01 9 138395910 138395910 G T MRPS2 Missense_Mutation p.Q274H 0.52 deleterious(0.03) possibly_damaging(0.707) TCGA-DU-6392-01 9 138594081 138594081 G A KCNT1 5'UTR 0.57 TCGA-DU-6392-01 9 138662884 138662884 C T KCNT1 Nonsense_Mutation p.Q651* 0.58 TCGA-DU-6392-01 9 138671301 138671301 T C KCNT1 Silent p.L942L 0.32 TCGA-DU-6392-01 9 138707005 138707005 C T CAMSAP1 Missense_Mutation p.A1482T 0.32 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 9 138713121 138713121 G A CAMSAP1 Missense_Mutation p.T1129M 0.42 deleterious(0.03) possibly_damaging(0.628) TCGA-DU-6392-01 9 139264250 139264250 G A CARD9 Silent p.I343I 0.24 TCGA-DU-6392-01 9 139265507 139265507 C T CARD9 Missense_Mutation p.S138N 0.23 tolerated(0.41) benign(0.002) TCGA-DU-6392-01 9 139278098 139278098 C T SNAPC4 Missense_Mutation p.R508Q 0.42 tolerated(0.07) benign(0.184) TCGA-DU-6392-01 9 139341773 139341773 C T SEC16A Silent p.G2201G 0.50 TCGA-DU-6392-01 9 139371902 139371902 C T SEC16A Missense_Mutation p.A56T 0.40 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 9 139391863 139391863 C T NOTCH1 Missense_Mutation p.V2110M 0.15 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 9 139393414 139393414 G A NOTCH1 Silent p.N2039N 0.09 TCGA-DU-6392-01 9 139393669 139393669 G A NOTCH1 Missense_Mutation p.H1993Y 0.33 tolerated(0.26) possibly_damaging(0.711) TCGA-DU-6392-01 9 139395022 139395022 G A NOTCH1 Silent p.D1972D 0.38 TCGA-DU-6392-01 9 139396309 139396309 C T NOTCH1 Nonsense_Mutation p.W1843* 0.28 TCGA-DU-6392-01 9 139397687 139397687 G A NOTCH1 Missense_Mutation p.A1705V 0.20 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 9 139397730 139397730 G A NOTCH1 Nonsense_Mutation p.Q1691* 0.30 TCGA-DU-6392-01 9 139413915 139413915 C T NOTCH1 Missense_Mutation p.R282H 0.32 tolerated(0.06) benign(0.077) TCGA-DU-6392-01 9 139617871 139617871 C T FAM69B Missense_Mutation p.A314V 0.50 tolerated(1) benign(0.361) TCGA-DU-6392-01 9 139651520 139651520 C T LCN8 Missense_Mutation p.S42N 0.54 tolerated(0.37) benign(0.017) TCGA-DU-6392-01 9 139697115 139697115 G T CCDC183 Splice_Site p.X182_splice 0.08 TCGA-DU-6392-01 9 139701208 139701208 G T CCDC183 Splice_Site p.X427_splice 0.11 TCGA-DU-6392-01 9 139718007 139718007 C T RABL6 Missense_Mutation p.T54M 0.22 deleterious(0) probably_damaging(0.983) TCGA-DU-6392-01 9 139722960 139722960 C T RABL6 Nonsense_Mutation p.R110* 0.44 TCGA-DU-6392-01 9 139726740 139726740 G A RABL6 Missense_Mutation p.R209H 0.37 tolerated(0.27) benign(0.074) TCGA-DU-6392-01 9 139739922 139739922 C T C9orf172 Silent p.Y352Y 0.47 TCGA-DU-6392-01 9 139741107 139741107 C T C9orf172 Silent p.R747R 0.21 TCGA-DU-6392-01 9 139741114 139741114 G A C9orf172 Missense_Mutation p.G750S 0.43 deleterious(0) possibly_damaging(0.712) TCGA-DU-6392-01 9 139741209 139741209 G A C9orf172 Silent p.S781S 0.38 TCGA-DU-6392-01 9 139758285 139758285 C A EDF1 Missense_Mutation p.E39D 0.09 tolerated(0.24) benign(0.008) TCGA-DU-6392-01 9 139910430 139910430 G A ABCA2 Missense_Mutation p.R1101C 0.50 tolerated(0.08) benign(0.031) TCGA-DU-6392-01 9 139911711 139911711 C T ABCA2 Missense_Mutation p.M830I 0.08 tolerated(0.07) benign(0.12) TCGA-DU-6392-01 9 140074825 140074825 G A ANAPC2 Silent p.D566D 0.30 TCGA-DU-6392-01 9 140082371 140082371 G T ANAPC2 Missense_Mutation p.S101Y 0.13 tolerated(0.05) benign(0.001) TCGA-DU-6392-01 9 140137261 140137261 C T TUBB4B Silent p.D197D 0.14 TCGA-DU-6392-01 9 140138074 140138074 G A FAM166A 3'UTR 0.37 TCGA-DU-6392-01 9 140161738 140161738 G A NELFB Missense_Mutation p.V429I 0.42 tolerated(0.24) benign(0.01) TCGA-DU-6392-01 9 140289831 140289831 G A EXD3 5'UTR 0.31 TCGA-DU-6392-01 9 140331418 140331418 G T ENTPD8 Missense_Mutation p.S153Y 0.11 tolerated(1) benign(0.006) TCGA-DU-6392-01 9 140446582 140446582 C T MRPL41 Nonsense_Mutation p.R17* 0.24 TCGA-DU-6392-01 9 140459020 140459020 A G DPH7 Missense_Mutation p.M272T 0.10 deleterious(0) possibly_damaging(0.774) TCGA-DU-6392-01 9 140472007 140472007 G T DPH7 Missense_Mutation p.L68M 0.10 deleterious(0.01) probably_damaging(0.945) TCGA-DU-6392-01 9 140611261 140611261 G A EHMT1 Missense_Mutation p.R90Q 0.36 tolerated_low_confidence(0.06) possibly_damaging(0.756) TCGA-DU-6392-01 9 140669648 140669648 C T EHMT1 Missense_Mutation p.R579W 0.30 deleterious(0) probably_damaging(0.989) TCGA-DU-6392-01 9 140685395 140685395 C T EHMT1 Silent p.I826I 0.09 TCGA-DU-6392-01 9 140712546 140712546 G A EHMT1 Missense_Mutation p.D1166N 0.39 tolerated(0.07) probably_damaging(0.957) TCGA-DU-6392-01 9 140811789 140811789 A C CACNA1B Missense_Mutation p.N291T 0.37 deleterious(0.01) benign(0.154) TCGA-DU-6392-01 9 140865852 140865852 G A CACNA1B Missense_Mutation p.A451T 0.36 tolerated(0.06) benign(0) TCGA-DU-6392-01 9 140953109 140953109 C T CACNA1B Missense_Mutation p.T1466I 0.24 tolerated(0.08) possibly_damaging(0.579) TCGA-DU-6392-01 9 141010080 141010080 G A CACNA1B Missense_Mutation p.R1909Q 0.38 tolerated(0.55) benign(0.417) TCGA-DU-6392-01 9 14313544 14313544 C T NFIB 5'UTR 0.36 TCGA-DU-6392-01 9 14722362 14722362 C T CER1 Silent p.E103E 0.30 TCGA-DU-6392-01 9 14747275 14747275 T C FREM1 Missense_Mutation p.H1999R 0.08 tolerated(0.26) benign(0.003) TCGA-DU-6392-01 9 14748498 14748498 A C FREM1 Silent p.S1899S 0.08 TCGA-DU-6392-01 9 14770771 14770771 T C FREM1 Missense_Mutation p.T1631A 0.37 tolerated(0.25) benign(0.011) TCGA-DU-6392-01 9 14808009 14808009 G A FREM1 Missense_Mutation p.A1006V 0.31 tolerated(0.16) benign(0.025) TCGA-DU-6392-01 9 14819255 14819255 G A FREM1 Silent p.G841G 0.19 TCGA-DU-6392-01 9 15479598 15479598 G A PSIP1 Nonsense_Mutation p.R182* 0.36 TCGA-DU-6392-01 9 15744416 15744416 C T CCDC171 Missense_Mutation p.A732V 0.43 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 16727882 16727882 G A BNC2 Silent p.F81F 0.38 TCGA-DU-6392-01 9 17298415 17298415 T A CNTLN Intron 0.36 TCGA-DU-6392-01 9 17786520 17786520 T C SH3GL2 Missense_Mutation p.F110S 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 18639269 18639269 C A ADAMTSL1 Missense_Mutation p.L232I 0.10 deleterious(0) probably_damaging(0.948) TCGA-DU-6392-01 9 18661965 18661965 C T ADAMTSL1 Silent p.L327L 0.41 TCGA-DU-6392-01 9 18680537 18680537 T C ADAMTSL1 Intron 0.31 TCGA-DU-6392-01 9 18721614 18721614 C T ADAMTSL1 Missense_Mutation p.R653W 0.40 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 18776887 18776887 C T ADAMTSL1 Missense_Mutation p.A887V 0.30 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 18777290 18777290 C T ADAMTSL1 Silent p.Y1021Y 0.57 TCGA-DU-6392-01 9 18777746 18777746 C T ADAMTSL1 Silent p.A1173A 0.40 TCGA-DU-6392-01 9 18795491 18795491 C T ADAMTSL1 Silent p.Y1258Y 0.33 TCGA-DU-6392-01 9 18889718 18889718 G A ADAMTSL1 Missense_Mutation p.A1539T 0.45 tolerated(0.42) benign(0.197) TCGA-DU-6392-01 9 18928081 18928081 G T FAM154A Missense_Mutation p.P465H 0.43 deleterious(0) possibly_damaging(0.614) TCGA-DU-6392-01 9 19050474 19050474 A G RRAGA Missense_Mutation p.M273V 0.12 deleterious(0.01) possibly_damaging(0.507) TCGA-DU-6392-01 9 19123610 19123610 C A PLIN2 Missense_Mutation p.D88Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 9 19550257 19550257 C T SLC24A2 Missense_Mutation p.E453K 0.41 deleterious(0.03) benign(0.119) TCGA-DU-6392-01 9 20414197 20414197 C T MLLT3 Missense_Mutation p.S216N 0.10 tolerated(0.08) probably_damaging(0.954) TCGA-DU-6392-01 9 20862604 20862604 G A FOCAD Missense_Mutation p.A650T 0.07 tolerated(0.08) possibly_damaging(0.878) TCGA-DU-6392-01 9 20881924 20881924 G A FOCAD Missense_Mutation p.R791H 0.18 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 20929556 20929556 T C FOCAD Missense_Mutation p.L1093S 0.29 deleterious(0) probably_damaging(0.965) TCGA-DU-6392-01 9 20949643 20949643 G T FOCAD Missense_Mutation p.R1306I 0.11 deleterious(0) benign(0.328) TCGA-DU-6392-01 9 20990276 20990276 C A FOCAD Missense_Mutation p.P1720Q 0.14 tolerated(0.07) possibly_damaging(0.529) TCGA-DU-6392-01 9 21015896 21015896 C T PTPLAD2 Splice_Site p.X128_splice 0.10 TCGA-DU-6392-01 9 21141206 21141206 A T IFNW1 Missense_Mutation p.C122S 0.36 deleterious(0) possibly_damaging(0.715) TCGA-DU-6392-01 9 21166323 21166323 A G IFNA21 Missense_Mutation p.S97P 0.13 deleterious(0.05) benign(0.146) TCGA-DU-6392-01 9 21201944 21201944 G A IFNA7 Missense_Mutation p.T74I 0.37 deleterious(0.02) benign(0.091) TCGA-DU-6392-01 9 21227557 21227557 G T IFNA17 3'UTR 0.13 TCGA-DU-6392-01 9 21333832 21333832 C A KLHL9 Missense_Mutation p.A343S 0.39 deleterious(0.05) probably_damaging(0.934) TCGA-DU-6392-01 9 21334319 21334319 G A KLHL9 Silent p.N180N 0.38 TCGA-DU-6392-01 9 21971038 21971038 C T CDKN2A Missense_Mutation p.R107H 0.37 tolerated(0.09) benign(0.281) TCGA-DU-6392-01 9 22006082 22006082 G A CDKN2B Silent p.D107D 0.55 TCGA-DU-6392-01 9 2643437 2643437 C T VLDLR Silent p.S242S 0.48 TCGA-DU-6392-01 9 2645695 2645695 T C VLDLR Silent p.I478I 0.29 TCGA-DU-6392-01 9 2646507 2646507 C A VLDLR Missense_Mutation p.S553Y 0.11 deleterious(0.01) possibly_damaging(0.701) TCGA-DU-6392-01 9 2653930 2653930 C T VLDLR 3'UTR 0.49 TCGA-DU-6392-01 9 26919311 26919311 T C PLAA Missense_Mutation p.T472A 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 26984505 26984505 C T IFT74 Missense_Mutation p.T138I 0.09 tolerated(0.12) benign(0.011) TCGA-DU-6392-01 9 27157963 27157963 G A TEK Missense_Mutation p.A63T 0.41 tolerated(0.5) benign(0.177) TCGA-DU-6392-01 9 2718180 2718180 C T KCNV2 Silent p.D147D 0.59 TCGA-DU-6392-01 9 27192502 27192502 T C TEK Missense_Mutation p.V502A 0.44 tolerated(0.18) benign(0.013) TCGA-DU-6392-01 9 27284695 27284695 T C EQTN 3'UTR 0.16 TCGA-DU-6392-01 9 27284734 27284734 G A EQTN Missense_Mutation p.S291L 0.09 deleterious_low_confidence(0.01) benign(0.011) TCGA-DU-6392-01 9 27524785 27524785 G T IFNK Nonsense_Mutation p.E151* 0.40 TCGA-DU-6392-01 9 27548406 27548406 T - C9orf72 Frame_Shift_Del p.K425Sfs*9 0.31 TCGA-DU-6392-01 9 27949356 27949356 C T LINGO2 Silent p.P438P 0.08 TCGA-DU-6392-01 9 27949585 27949585 C T LINGO2 Missense_Mutation p.R362H 0.25 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 9 2828698 2828698 C T KIAA0020 Silent p.Q311Q 0.27 TCGA-DU-6392-01 9 2831319 2831319 C T KIAA0020 Missense_Mutation p.R181H 0.27 deleterious(0) probably_damaging(0.969) TCGA-DU-6392-01 9 32541485 32541485 C A TOPORS Missense_Mutation p.S1013I 0.07 tolerated_low_confidence(0.11) unknown(0) TCGA-DU-6392-01 9 32542146 32542146 C T TOPORS Missense_Mutation p.G793R 0.33 deleterious(0) unknown(0) TCGA-DU-6392-01 9 328087 328087 G A DOCK8 Silent p.T320T 0.42 TCGA-DU-6392-01 9 32973503 32973503 G A APTX Missense_Mutation p.T341I 0.16 deleterious_low_confidence(0.01) benign(0.209) TCGA-DU-6392-01 9 33073796 33073796 C T SMU1 Missense_Mutation p.R12H 0.51 deleterious(0.04) benign(0.313) TCGA-DU-6392-01 9 33113450 33113450 C T B4GALT1 3'UTR 0.28 TCGA-DU-6392-01 9 33256830 33256830 A C BAG1 Missense_Mutation p.F285C 0.42 tolerated(0.12) benign(0.209) TCGA-DU-6392-01 9 33295380 33295380 C T NFX1 Nonsense_Mutation p.R330* 0.26 TCGA-DU-6392-01 9 33442479 33442479 G T AQP3 Missense_Mutation p.A177D 0.33 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 9 33442895 33442895 G T AQP3 Silent p.T149T 0.30 TCGA-DU-6392-01 9 33466321 33466321 C T NOL6 Missense_Mutation p.V732M 0.09 deleterious(0.01) probably_damaging(0.952) TCGA-DU-6392-01 9 33468871 33468871 C A NOL6 Splice_Site p.X343_splice 0.32 TCGA-DU-6392-01 9 33797979 33797979 T C PRSS3 Missense_Mutation p.V175A 0.30 tolerated(0.14) benign(0.006) TCGA-DU-6392-01 9 33926987 33926987 C T UBAP2 Silent p.P821P 0.16 TCGA-DU-6392-01 9 34241252 34241252 C T UBAP1 Missense_Mutation p.R141W 0.46 tolerated(0.06) benign(0.011) TCGA-DU-6392-01 9 34372162 34372162 C T KIAA1161 Silent p.A226A 0.32 TCGA-DU-6392-01 9 34372844 34372844 G A KIAA1161 5'UTR 0.08 TCGA-DU-6392-01 9 34400979 34400979 C T FAM219A Missense_Mutation p.A181T 0.35 tolerated(0.22) benign(0.03) TCGA-DU-6392-01 9 34514703 34514703 C A DNAI1 Missense_Mutation p.S595Y 0.09 deleterious(0) probably_damaging(0.977) TCGA-DU-6392-01 9 34517367 34517367 G A DNAI1 Missense_Mutation p.V635M 0.54 deleterious(0) benign(0.296) TCGA-DU-6392-01 9 34564615 34564615 C T CNTFR Missense_Mutation p.V101I 0.53 tolerated(0.43) benign(0.004) TCGA-DU-6392-01 9 34610806 34610806 G A RPP25L Missense_Mutation p.S163L 0.37 deleterious_low_confidence(0.01) unknown(0) TCGA-DU-6392-01 9 34617963 34617963 C A DCTN3 Missense_Mutation p.D63Y 0.31 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 9 34622473 34622473 C A ARID3C Nonsense_Mutation p.G307* 0.11 TCGA-DU-6392-01 9 34649090 34649090 C T GALT Intron 0.33 TCGA-DU-6392-01 9 34658656 34658656 G A IL11RA Silent p.P262P 0.30 TCGA-DU-6392-01 9 34660690 34660690 G A IL11RA Intron 0.44 TCGA-DU-6392-01 9 34662395 34662395 C A CCL27 Missense_Mutation p.S30I 0.30 deleterious(0.03) benign(0.081) TCGA-DU-6392-01 9 34977131 34977131 G A KIAA1045 Missense_Mutation p.A301T 0.33 tolerated(0.62) benign(0.001) TCGA-DU-6392-01 9 34996467 34996467 C T DNAJB5 Silent p.G253G 0.51 TCGA-DU-6392-01 9 34996478 34996478 G A DNAJB5 Missense_Mutation p.R257H 0.47 tolerated(0.06) benign(0.078) TCGA-DU-6392-01 9 35043629 35043629 G T C9orf131 Missense_Mutation p.A335S 0.31 tolerated(0.16) possibly_damaging(0.897) TCGA-DU-6392-01 9 35044203 35044203 A C C9orf131 Missense_Mutation p.E526A 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-DU-6392-01 9 35045619 35045619 G T C9orf131 Missense_Mutation p.S998I 0.45 tolerated(0.12) benign(0.2) TCGA-DU-6392-01 9 35066787 35066787 G A VCP Silent p.Y110Y 0.35 TCGA-DU-6392-01 9 35068295 35068295 C G VCP Missense_Mutation p.V28L 0.05 tolerated(0.06) possibly_damaging(0.477) TCGA-DU-6392-01 9 35074019 35074019 A G FANCG 3'UTR 0.26 TCGA-DU-6392-01 9 35076575 35076575 C T FANCG Silent p.L310L 0.33 TCGA-DU-6392-01 9 35090505 35090505 G T PIGO Missense_Mutation p.L938I 0.35 deleterious(0.01) probably_damaging(0.972) TCGA-DU-6392-01 9 35091816 35091816 G A PIGO Missense_Mutation p.R690C 0.41 deleterious(0.04) benign(0.005) TCGA-DU-6392-01 9 35093169 35093169 G A PIGO Missense_Mutation p.T326M 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 35100655 35100655 C A STOML2 Missense_Mutation p.K291N 0.30 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 35101490 35101490 C T STOML2 Missense_Mutation p.R171H 0.37 tolerated(0.1) probably_damaging(0.939) TCGA-DU-6392-01 9 35106301 35106301 A G FAM214B Missense_Mutation p.V389A 0.31 deleterious(0.04) probably_damaging(0.992) TCGA-DU-6392-01 9 35375166 35375166 G T UNC13B Missense_Mutation p.A446S 0.37 deleterious(0.04) possibly_damaging(0.507) TCGA-DU-6392-01 9 35381199 35381199 C T UNC13B Missense_Mutation p.T744I 0.38 deleterious(0.03) probably_damaging(0.987) TCGA-DU-6392-01 9 35396556 35396556 C T UNC13B Missense_Mutation p.R1049W 0.38 deleterious(0.01) benign(0.339) TCGA-DU-6392-01 9 35396885 35396885 T C UNC13B Missense_Mutation p.V1079A 0.45 deleterious(0.02) possibly_damaging(0.898) TCGA-DU-6392-01 9 35560530 35560530 G A RUSC2 Missense_Mutation p.S1298N 0.38 tolerated(0.36) benign(0.003) TCGA-DU-6392-01 9 35660849 35660849 G T CCDC107 Nonsense_Mutation p.E173* 0.06 TCGA-DU-6392-01 9 35661071 35661071 C T CCDC107 Missense_Mutation p.R247W 0.07 deleterious_low_confidence(0.01) benign(0.001) TCGA-DU-6392-01 9 35675906 35675906 C T CA9 Silent p.R194R 0.35 TCGA-DU-6392-01 9 35697711 35697711 C T TLN1 3'UTR 0.32 TCGA-DU-6392-01 9 35697781 35697781 G T TLN1 3'UTR 0.09 TCGA-DU-6392-01 9 35736702 35736702 G A CREB3 Silent p.L365L 0.12 TCGA-DU-6392-01 9 35738597 35738597 C A GBA2 Missense_Mutation p.K660N 0.12 tolerated(0.19) possibly_damaging(0.698) TCGA-DU-6392-01 9 35750902 35750902 G A RGP1 Missense_Mutation p.V135I 0.40 tolerated(0.13) possibly_damaging(0.487) TCGA-DU-6392-01 9 35792411 35792411 G A NPR2 Silent p.A2A 0.42 TCGA-DU-6392-01 9 35805938 35805938 G A NPR2 Missense_Mutation p.R720H 0.46 deleterious(0.02) probably_damaging(0.948) TCGA-DU-6392-01 9 35807348 35807348 C A NPR2 Missense_Mutation p.L889M 0.31 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 36109991 36109991 T C RECK Silent p.C601C 0.45 TCGA-DU-6392-01 9 36121545 36121545 C T RECK Missense_Mutation p.P852S 0.28 tolerated(0.24) probably_damaging(0.959) TCGA-DU-6392-01 9 36199092 36199092 T C CLTA Silent p.L124L 0.07 TCGA-DU-6392-01 9 36357831 36357831 G T RNF38 Missense_Mutation p.P227T 0.45 deleterious(0) possibly_damaging(0.901) TCGA-DU-6392-01 9 36882013 36882013 C A PAX5 Missense_Mutation p.G334W 0.50 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 37126625 37126625 G T ZCCHC7 Missense_Mutation p.S99I 0.08 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 9 37442057 37442057 G A ZBTB5 Silent p.G164G 0.33 TCGA-DU-6392-01 9 37512652 37512652 G T FBXO10 Silent p.P921P 0.09 TCGA-DU-6392-01 9 37518375 37518375 G A FBXO10 Missense_Mutation p.A754V 0.38 deleterious(0.01) probably_damaging(0.955) TCGA-DU-6392-01 9 37740152 37740152 C T FRMPD1 Missense_Mutation p.R543C 0.37 tolerated(0.19) benign(0.003) TCGA-DU-6392-01 9 37854804 37854804 G T DCAF10 Missense_Mutation p.K293N 0.10 tolerated(0.16) probably_damaging(0.991) TCGA-DU-6392-01 9 37857348 37857348 G T DCAF10 Nonsense_Mutation p.G389* 0.39 TCGA-DU-6392-01 9 379793 379793 C T DOCK8 Silent p.F821F 0.41 TCGA-DU-6392-01 9 38068631 38068631 C T SHB Nonsense_Mutation p.W4* 0.38 TCGA-DU-6392-01 9 38395947 38395947 G A ALDH1B1 Missense_Mutation p.V68M 0.43 deleterious(0.01) benign(0.058) TCGA-DU-6392-01 9 38396998 38396998 T G ALDH1B1 Missense_Mutation p.F418C 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 9 38411458 38411458 G A IGFBPL1 Missense_Mutation p.T259M 0.48 tolerated(0.08) benign(0.082) TCGA-DU-6392-01 9 38413250 38413250 G T IGFBPL1 Missense_Mutation p.A224D 0.39 deleterious(0.01) possibly_damaging(0.841) TCGA-DU-6392-01 9 39118123 39118123 G T CNTNAP3 Missense_Mutation p.N738K 0.05 deleterious(0) possibly_damaging(0.611) TCGA-DU-6392-01 9 40772884 40772884 C T ZNF658 Silent p.P797P 0.29 TCGA-DU-6392-01 9 40773300 40773300 C T ZNF658 Missense_Mutation p.E659K 0.26 tolerated(0.33) possibly_damaging(0.722) TCGA-DU-6392-01 9 4125771 4125771 T C GLIS3 Missense_Mutation p.N187D 0.31 tolerated(0.93) probably_damaging(0.991) TCGA-DU-6392-01 9 4286206 4286206 C T GLIS3 Missense_Mutation p.V74M 0.22 tolerated(0.39) benign(0.001) TCGA-DU-6392-01 9 43629308 43629308 G A SPATA31A6 Missense_Mutation p.R68W 0.25 tolerated(0.16) benign(0) TCGA-DU-6392-01 9 439372 439372 C T DOCK8 Missense_Mutation p.A1736V 0.49 tolerated(0.09) benign(0.377) TCGA-DU-6392-01 9 441969 441969 C A DOCK8 Missense_Mutation p.P1817H 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-DU-6392-01 9 4567705 4567705 G A SLC1A1 Missense_Mutation p.D174N 0.41 tolerated(0.57) benign(0.067) TCGA-DU-6392-01 9 4625414 4625414 A C SPATA6L Missense_Mutation p.H136Q 0.12 tolerated(0.07) benign(0.017) TCGA-DU-6392-01 9 4701964 4701964 C T CDC37L1 Missense_Mutation p.T283I 0.26 tolerated(0.18) benign(0.002) TCGA-DU-6392-01 9 5050690 5050690 G A JAK2 Missense_Mutation p.R158Q 0.24 tolerated(0.29) possibly_damaging(0.678) TCGA-DU-6392-01 9 5457177 5457177 G A CD274 Missense_Mutation p.A51T 0.39 tolerated(0.58) benign(0.001) TCGA-DU-6392-01 9 5534953 5534953 C T PDCD1LG2 Silent p.H88H 0.15 TCGA-DU-6392-01 9 5534981 5534981 G A PDCD1LG2 Missense_Mutation p.G98R 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 5747416 5747416 A G KIAA1432 Missense_Mutation p.S455G 0.26 tolerated(0.37) benign(0) TCGA-DU-6392-01 9 5765701 5765701 C T KIAA1432 Nonsense_Mutation p.R1014* 0.08 TCGA-DU-6392-01 9 6012454 6012454 C A RANBP6 Nonsense_Mutation p.E1052* 0.09 TCGA-DU-6392-01 9 6013420 6013420 C T RANBP6 Missense_Mutation p.A730T 0.38 deleterious(0.05) benign(0.259) TCGA-DU-6392-01 9 6250588 6250588 C T IL33 Missense_Mutation p.S69L 0.39 deleterious(0.03) benign(0.382) TCGA-DU-6392-01 9 6331024 6331024 A G TPD52L3 3'Flank 0.09 TCGA-DU-6392-01 9 6540085 6540085 C T GLDC Silent p.E877E 0.39 TCGA-DU-6392-01 9 6602179 6602179 C T GLDC Missense_Mutation p.R362H 0.32 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 67926817 67926817 G T ANKRD20A1 5'UTR 0.19 TCGA-DU-6392-01 9 67968245 67968245 C T ANKRD20A1 Silent p.L602L 0.26 TCGA-DU-6392-01 9 6990511 6990511 G T KDM4C Silent p.A591A 0.46 TCGA-DU-6392-01 9 71114241 71114241 C T PGM5 Silent p.Y526Y 0.34 TCGA-DU-6392-01 9 71152347 71152347 G A TMEM252 Missense_Mutation p.A114V 0.35 tolerated(0.08) benign(0.151) TCGA-DU-6392-01 9 711585 711585 C T KANK1 Silent p.R273R 0.32 TCGA-DU-6392-01 9 71833262 71833262 A G TJP2 Missense_Mutation p.K141R 0.34 deleterious(0.02) benign(0.092) TCGA-DU-6392-01 9 72131307 72131307 C A APBA1 Missense_Mutation p.V274L 0.23 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-DU-6392-01 9 72338485 72338485 C A PTAR1 Missense_Mutation p.S235I 0.24 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 72897424 72897424 G A SMC5 Silent p.G302G 0.48 TCGA-DU-6392-01 9 72962005 72962006 - T SMC5 Frame_Shift_Ins p.L865Ffs*3 0.10 TCGA-DU-6392-01 9 72967143 72967143 G A SMC5 Missense_Mutation p.V1068I 0.39 tolerated(0.16) benign(0.029) TCGA-DU-6392-01 9 73426150 73426150 C T TRPM3 Intron 0.25 TCGA-DU-6392-01 9 73461449 73461449 T C TRPM3 Missense_Mutation p.E174G 0.10 deleterious(0) benign(0.297) TCGA-DU-6392-01 9 74300191 74300191 G A TMEM2 Silent p.D1358D 0.40 TCGA-DU-6392-01 9 74345048 74345048 G A TMEM2 Missense_Mutation p.P632L 0.25 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 9 74345102 74345102 C A TMEM2 Missense_Mutation p.R614M 0.10 deleterious(0) probably_damaging(0.981) TCGA-DU-6392-01 9 74361227 74361227 C A TMEM2 Missense_Mutation p.R121M 0.42 tolerated(0.13) possibly_damaging(0.657) TCGA-DU-6392-01 9 74489670 74489670 G A ABHD17B Silent p.S109S 0.11 TCGA-DU-6392-01 9 74489728 74489728 G A ABHD17B Missense_Mutation p.A90V 0.10 deleterious(0) benign(0.394) TCGA-DU-6392-01 9 77339420 77339420 C T TRPM6 3'UTR 0.38 TCGA-DU-6392-01 9 77365589 77365589 C A TRPM6 Missense_Mutation p.R1683M 0.38 deleterious(0.02) possibly_damaging(0.614) TCGA-DU-6392-01 9 77377064 77377064 T C TRPM6 Missense_Mutation p.Q1508R 0.09 tolerated_low_confidence(0.27) benign(0.003) TCGA-DU-6392-01 9 77386687 77386687 T - TRPM6 Frame_Shift_Del p.K1156Nfs*10 0.14 TCGA-DU-6392-01 9 77400893 77400893 C A TRPM6 Missense_Mutation p.R939I 0.13 deleterious(0.01) probably_damaging(0.934) TCGA-DU-6392-01 9 77457137 77457137 G A TRPM6 Missense_Mutation p.T92I 0.09 deleterious(0) possibly_damaging(0.847) TCGA-DU-6392-01 9 77683915 77683915 C T NMRK1 Missense_Mutation p.V165I 0.14 tolerated(1) benign(0.005) TCGA-DU-6392-01 9 78601108 78601108 C T PCSK5 Missense_Mutation p.R120C 0.34 deleterious(0.05) possibly_damaging(0.634) TCGA-DU-6392-01 9 78710934 78710934 C T PCSK5 Silent p.S341S 0.36 TCGA-DU-6392-01 9 78808156 78808156 C T PCSK5 Intron 0.31 TCGA-DU-6392-01 9 78923581 78923581 C A PCSK5 Missense_Mutation p.P1182T 0.39 tolerated(0.21) benign(0.003) TCGA-DU-6392-01 9 78973785 78973785 G A PCSK5 Missense_Mutation p.D1844N 0.25 tolerated(0.06) unknown(0) TCGA-DU-6392-01 9 79321301 79321301 C A PRUNE2 Missense_Mutation p.M1963I 0.08 tolerated(0.14) benign(0.03) TCGA-DU-6392-01 9 79324162 79324162 T G PRUNE2 Missense_Mutation p.I1010L 0.27 tolerated(0.37) benign(0.004) TCGA-DU-6392-01 9 79952386 79952386 T C VPS13A Missense_Mutation p.I2104T 0.37 deleterious(0) benign(0.14) TCGA-DU-6392-01 9 79954682 79954682 C T VPS13A Missense_Mutation p.A2210V 0.31 deleterious(0) probably_damaging(0.976) TCGA-DU-6392-01 9 80038793 80038793 C A GNA14 3'UTR 0.25 TCGA-DU-6392-01 9 80040524 80040524 C A GNA14 Missense_Mutation p.E277D 0.45 tolerated(0.14) benign(0.001) TCGA-DU-6392-01 9 80866931 80866931 C T CEP78 Missense_Mutation p.R394C 0.23 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 9 80921249 80921249 C A PSAT1 Silent p.T139T 0.10 TCGA-DU-6392-01 9 8340357 8340357 G A PTPRD Missense_Mutation p.R1747C 0.42 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 84603722 84603722 G T SPATA31D1 5'UTR 0.36 TCGA-DU-6392-01 9 8460414 8460414 T G PTPRD Missense_Mutation p.K1291T 0.40 deleterious(0.02) probably_damaging(0.989) TCGA-DU-6392-01 9 8471069 8471069 T A PTPRD Missense_Mutation p.I1144F 0.37 deleterious(0) possibly_damaging(0.544) TCGA-DU-6392-01 9 8501014 8501014 G A PTPRD Missense_Mutation p.S623F 0.53 deleterious(0) unknown(0) TCGA-DU-6392-01 9 85615413 85615413 C A RASEF Missense_Mutation p.G504W 0.30 deleterious(0.01) possibly_damaging(0.497) TCGA-DU-6392-01 9 85640766 85640766 G A RASEF Missense_Mutation p.H168Y 0.07 deleterious(0.03) possibly_damaging(0.791) TCGA-DU-6392-01 9 86297963 86297963 A G UBQLN1 Silent p.A117A 0.07 TCGA-DU-6392-01 9 86399660 86399660 T C GKAP1 Missense_Mutation p.T178A 0.08 deleterious(0.05) possibly_damaging(0.615) TCGA-DU-6392-01 9 86452221 86452221 C T KIF27 Missense_Mutation p.E1301K 0.30 deleterious(0.01) possibly_damaging(0.611) TCGA-DU-6392-01 9 86518586 86518586 C T KIF27 Missense_Mutation p.D283N 0.44 deleterious(0.03) probably_damaging(1) TCGA-DU-6392-01 9 86523414 86523414 G A KIF27 Missense_Mutation p.T151I 0.40 deleterious(0.01) probably_damaging(0.983) TCGA-DU-6392-01 9 86616977 86616977 C T RMI1 Missense_Mutation p.T359M 0.46 tolerated(0.27) benign(0.003) TCGA-DU-6392-01 9 86917129 86917129 C A SLC28A3 Missense_Mutation p.W170C 0.15 deleterious(0) probably_damaging(0.982) TCGA-DU-6392-01 9 87342789 87342789 C T NTRK2 Silent p.D358D 0.28 TCGA-DU-6392-01 9 87635123 87635123 C T NTRK2 Silent p.V725V 0.43 TCGA-DU-6392-01 9 88248234 88248234 C T AGTPBP1 Missense_Mutation p.R413H 0.31 tolerated(0.19) benign(0.002) TCGA-DU-6392-01 9 88576971 88576971 C T NAA35 Missense_Mutation p.T131M 0.25 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 9 88590033 88590033 G A NAA35 Missense_Mutation p.M196I 0.09 deleterious(0.01) possibly_damaging(0.824) TCGA-DU-6392-01 9 88628649 88628649 G A NAA35 Missense_Mutation p.A469T 0.35 tolerated(0.13) benign(0.41) TCGA-DU-6392-01 9 88940264 88940264 G A ZCCHC6 Missense_Mutation p.R592C 0.33 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 9 90272950 90272950 C T DAPK1 Nonsense_Mutation p.R611* 0.57 TCGA-DU-6392-01 9 90273032 90273032 C T DAPK1 Missense_Mutation p.A638V 0.44 tolerated(0.79) benign(0.01) TCGA-DU-6392-01 9 90313593 90313593 C T DAPK1 Silent p.N878N 0.22 TCGA-DU-6392-01 9 90315107 90315107 G T DAPK1 Missense_Mutation p.K942N 0.29 deleterious(0) probably_damaging(0.929) TCGA-DU-6392-01 9 90502272 90502272 G A SPATA31E1 Missense_Mutation p.G957E 0.10 tolerated(0.27) benign(0.003) TCGA-DU-6392-01 9 90503722 90503722 G T SPATA31E1 Missense_Mutation p.Q1440H 0.21 deleterious_low_confidence(0.01) benign(0.183) TCGA-DU-6392-01 9 90586220 90586220 C T CDK20 Missense_Mutation p.G74S 0.32 tolerated(0.11) possibly_damaging(0.449) TCGA-DU-6392-01 9 91083495 91083495 C T SPIN1 Silent p.G188G 0.41 TCGA-DU-6392-01 9 91616912 91616912 A G S1PR3 Missense_Mutation p.D266G 0.15 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 9 91617264 91617264 C T S1PR3 3'UTR 0.37 TCGA-DU-6392-01 9 91940432 91940432 C A SECISBP2 Silent p.A91A 0.10 TCGA-DU-6392-01 9 91963028 91963028 G A SECISBP2 Missense_Mutation p.R546H 0.35 tolerated(0.16) benign(0.187) TCGA-DU-6392-01 9 91964707 91964707 C T SECISBP2 Silent p.D585D 0.13 TCGA-DU-6392-01 9 91978850 91978850 C T SECISBP2 3'Flank 0.35 TCGA-DU-6392-01 9 92003880 92003880 C T SEMA4D Missense_Mutation p.S286N 0.10 tolerated(0.51) benign(0.003) TCGA-DU-6392-01 9 94172307 94172307 C T NFIL3 Missense_Mutation p.G237D 0.42 tolerated(0.1) possibly_damaging(0.828) TCGA-DU-6392-01 9 94172623 94172623 T C NFIL3 Missense_Mutation p.T132A 0.43 tolerated(0.7) benign(0.007) TCGA-DU-6392-01 9 94486137 94486137 T A ROR2 Missense_Mutation p.N880I 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DU-6392-01 9 94874736 94874736 C T SPTLC1 Splice_Site p.X55_splice 0.28 TCGA-DU-6392-01 9 94877622 94877622 C A SPTLC1 Missense_Mutation p.V11L 0.34 tolerated(0.44) benign(0.001) TCGA-DU-6392-01 9 95077759 95077759 T C NOL8 Missense_Mutation p.E383G 0.35 deleterious(0) possibly_damaging(0.598) TCGA-DU-6392-01 9 95155416 95155416 G A OGN Nonsense_Mutation p.R127* 0.13 TCGA-DU-6392-01 9 95179567 95179567 G A OMD Missense_Mutation p.H92Y 0.33 tolerated(0.14) benign(0.134) TCGA-DU-6392-01 9 95228754 95228754 T A ASPN Missense_Mutation p.S163C 0.08 deleterious(0.01) benign(0.353) TCGA-DU-6392-01 9 95263331 95263331 G A ECM2 Silent p.L537L 0.32 TCGA-DU-6392-01 9 95277058 95277058 T C ECM2 Silent p.R303R 0.09 TCGA-DU-6392-01 9 95279851 95279851 T - ECM2 Intron 0.16 TCGA-DU-6392-01 9 95400540 95400540 C T IPPK Missense_Mutation p.C220Y 0.09 deleterious(0) possibly_damaging(0.898) TCGA-DU-6392-01 9 95481452 95481452 C T BICD2 Missense_Mutation p.S492N 0.36 tolerated(0.25) benign(0.007) TCGA-DU-6392-01 9 95481641 95481641 A G BICD2 Missense_Mutation p.I429T 0.32 tolerated(0.33) benign(0.236) TCGA-DU-6392-01 9 95482688 95482688 G A BICD2 Missense_Mutation p.T319M 0.51 tolerated(0.08) benign(0.027) TCGA-DU-6392-01 9 95599978 95599978 G A ANKRD19P RNA 0.50 TCGA-DU-6392-01 9 95796895 95796895 T C FGD3 Missense_Mutation p.W620R 0.49 deleterious(0) possibly_damaging(0.866) TCGA-DU-6392-01 9 95888857 95888857 C T NINJ1 Missense_Mutation p.A47T 0.37 deleterious(0.02) probably_damaging(0.989) TCGA-DU-6392-01 9 96009886 96009886 G A WNK2 Missense_Mutation p.R535H 0.45 unknown(0) TCGA-DU-6392-01 9 96305688 96305688 C T FAM120A Silent p.D698D 0.33 TCGA-DU-6392-01 9 96339133 96339133 C T PHF2 Silent p.C26C 0.27 TCGA-DU-6392-01 9 96847558 96847558 G T PTPDC1 Missense_Mutation p.K88N 0.30 deleterious(0.04) possibly_damaging(0.452) TCGA-DU-6392-01 9 96847695 96847695 A G PTPDC1 Missense_Mutation p.Y134C 0.33 deleterious(0) probably_damaging(0.978) TCGA-DU-6392-01 9 97062159 97062159 C A ZNF169 Missense_Mutation p.L107I 0.09 tolerated(0.06) benign(0.01) TCGA-DU-6392-01 9 97082793 97082793 C A NUTM2F Missense_Mutation p.K355N 0.34 deleterious(0.02) benign(0.15) TCGA-DU-6392-01 9 97084494 97084494 C A NUTM2F Missense_Mutation p.E277D 0.09 deleterious(0.01) benign(0.329) TCGA-DU-6392-01 9 97365633 97365633 C T FBP1 3'UTR 0.42 TCGA-DU-6392-01 9 97380054 97380054 C A FBP1 Missense_Mutation p.R141I 0.32 deleterious(0.02) benign(0.183) TCGA-DU-6392-01 9 97522193 97522193 T C C9orf3 Missense_Mutation p.I43T 0.11 tolerated(0.06) possibly_damaging(0.656) TCGA-DU-6392-01 9 97563235 97563235 C T C9orf3 Silent p.L439L 0.09 TCGA-DU-6392-01 9 98212155 98212155 C T PTCH1 Missense_Mutation p.V1173M 0.27 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 9 98239054 98239054 C T PTCH1 Missense_Mutation p.R530K 0.25 tolerated(0.08) benign(0.05) TCGA-DU-6392-01 9 98775028 98775028 C A ERCC6L2 Missense_Mutation p.T371N 0.38 deleterious(0.01) possibly_damaging(0.885) TCGA-DU-6392-01 9 990083 990083 A G DMRT3 Missense_Mutation p.N166S 0.39 tolerated(0.35) benign(0.001) TCGA-DU-6392-01 9 99285544 99285544 G A CDC14B Missense_Mutation p.P415L 0.12 tolerated(0.39) benign(0.001) TCGA-DU-6392-01 9 99285970 99285970 G A CDC14B Silent p.Y328Y 0.37 TCGA-DU-6392-01 9 99521018 99521018 A G ZNF510 3'UTR 0.49 TCGA-DU-6392-01 9 99521449 99521449 G A ZNF510 Nonsense_Mutation p.R555* 0.36 TCGA-DU-6392-01 9 99581278 99581278 A G ZNF782 Missense_Mutation p.C343R 0.06 deleterious(0.02) benign(0.006) TCGA-DU-6392-01 9 99581760 99581760 G T ZNF782 Missense_Mutation p.T182N 0.08 tolerated(0.06) benign(0.003) TCGA-DU-6392-01 9 99694208 99694208 G T NUTM2G Missense_Mutation p.S74I 0.33 deleterious(0.04) possibly_damaging(0.664) TCGA-DU-6392-01 X 100081697 100081697 A T CSTF2 Missense_Mutation p.Q259H 0.13 deleterious(0.02) benign(0.36) TCGA-DU-6392-01 X 100104859 100104859 G A NOX1 Silent p.L400L 0.10 TCGA-DU-6392-01 X 100105197 100105197 C T NOX1 Missense_Mutation p.G359E 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 100117425 100117425 G A NOX1 Silent p.H209H 0.39 TCGA-DU-6392-01 X 100169500 100169500 T A XKRX Missense_Mutation p.I393F 0.06 deleterious(0.01) probably_damaging(0.917) TCGA-DU-6392-01 X 100183177 100183177 G T XKRX Missense_Mutation p.F39L 0.08 tolerated(0.95) probably_damaging(0.987) TCGA-DU-6392-01 X 100183367 100183367 G T XKRX 5'UTR 0.37 TCGA-DU-6392-01 X 100274325 100274325 C A TRMT2B Missense_Mutation p.K412N 0.41 tolerated(0.41) benign(0.288) TCGA-DU-6392-01 X 100276145 100276145 C T TRMT2B Silent p.G337G 0.49 TCGA-DU-6392-01 X 100356228 100356228 G A CENPI Missense_Mutation p.A57T 0.30 tolerated(0.41) benign(0.021) TCGA-DU-6392-01 X 100486730 100486730 C T DRP2 Nonsense_Mutation p.R32* 0.40 TCGA-DU-6392-01 X 100492743 100492743 A T DRP2 Missense_Mutation p.Q139H 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-DU-6392-01 X 100537368 100537368 A G TAF7L Missense_Mutation p.I204T 0.08 tolerated(0.37) benign(0.005) TCGA-DU-6392-01 X 100615566 100615566 C A BTK Missense_Mutation p.D256Y 0.10 deleterious(0) possibly_damaging(0.871) TCGA-DU-6392-01 X 100662836 100662836 A C GLA Missense_Mutation p.L19R 0.10 deleterious(0) possibly_damaging(0.55) TCGA-DU-6392-01 X 100667626 100667626 G T HNRNPH2 Missense_Mutation p.R217I 0.15 tolerated(0.11) possibly_damaging(0.899) TCGA-DU-6392-01 X 100667953 100667953 G T HNRNPH2 Missense_Mutation p.R326I 0.08 deleterious(0) probably_damaging(0.958) TCGA-DU-6392-01 X 100668321 100668321 G A HNRNPH2 Missense_Mutation p.A449T 0.07 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-DU-6392-01 X 100808288 100808288 A C ARMCX1 Missense_Mutation p.K125N 0.08 tolerated_low_confidence(0.06) benign(0.075) TCGA-DU-6392-01 X 10096201 10096201 G T WWC3 Silent p.T760T 0.34 TCGA-DU-6392-01 X 10098024 10098024 G A WWC3 Missense_Mutation p.G821S 0.36 tolerated(0.12) probably_damaging(0.937) TCGA-DU-6392-01 X 101382490 101382490 C A TCEAL2 3'UTR 0.10 TCGA-DU-6392-01 X 101396115 101396115 C A TCEAL6 Missense_Mutation p.K63N 0.35 deleterious(0.03) benign(0.062) TCGA-DU-6392-01 X 10176405 10176405 C A CLCN4 Silent p.P388P 0.09 TCGA-DU-6392-01 X 101911928 101911928 G A GPRASP1 Silent p.T1029T 0.35 TCGA-DU-6392-01 X 101912339 101912339 T A GPRASP1 Silent p.I1166I 0.35 TCGA-DU-6392-01 X 101912597 101912597 G A GPRASP1 Silent p.P1252P 0.10 TCGA-DU-6392-01 X 101969692 101969692 A G GPRASP2 5'UTR 0.39 TCGA-DU-6392-01 X 101971015 101971015 C A GPRASP2 Silent p.I406I 0.09 TCGA-DU-6392-01 X 101971332 101971332 G A GPRASP2 Missense_Mutation p.S512N 0.10 tolerated(0.3) benign(0.005) TCGA-DU-6392-01 X 102005007 102005007 A G BHLHB9 Missense_Mutation p.N362D 0.09 tolerated(0.29) probably_damaging(1) TCGA-DU-6392-01 X 102192394 102192394 G A RAB40AL Missense_Mutation p.D50N 0.34 deleterious(0) probably_damaging(0.955) TCGA-DU-6392-01 X 102192955 102192955 C T RAB40AL Nonsense_Mutation p.R237* 0.37 TCGA-DU-6392-01 X 102317713 102317713 G T BEX1 3'UTR 0.53 TCGA-DU-6392-01 X 102317981 102317981 C A BEX1 Missense_Mutation p.Q74H 0.10 tolerated(0.11) possibly_damaging(0.633) TCGA-DU-6392-01 X 102318100 102318100 C T BEX1 Missense_Mutation p.A35T 0.08 tolerated(0.08) benign(0.11) TCGA-DU-6392-01 X 102334163 102334163 C A NXF3 Missense_Mutation p.G455V 0.06 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 102338621 102338621 C A NXF3 Splice_Site p.X118_splice 0.20 TCGA-DU-6392-01 X 102471115 102471115 C A BEX4 Missense_Mutation p.L12I 0.11 tolerated(0.1) possibly_damaging(0.636) TCGA-DU-6392-01 X 102564673 102564673 C T BEX2 Missense_Mutation p.A110T 0.08 tolerated(0.08) possibly_damaging(0.523) TCGA-DU-6392-01 X 102754930 102754930 C T RAB40A Missense_Mutation p.S252N 0.08 tolerated_low_confidence(0.06) possibly_damaging(0.694) TCGA-DU-6392-01 X 103040568 103040568 C T PLP1 Missense_Mutation p.A21V 0.42 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 X 103358835 103358835 C T ZCCHC18 Silent p.S11S 0.24 TCGA-DU-6392-01 X 103359095 103359095 T C ZCCHC18 Missense_Mutation p.M98T 0.30 tolerated(0.06) benign(0.135) TCGA-DU-6392-01 X 103359493 103359493 C T ZCCHC18 Missense_Mutation p.R231W 0.39 tolerated(0.14) benign(0.086) TCGA-DU-6392-01 X 103499526 103499526 T C ESX1 Missense_Mutation p.E2G 0.40 deleterious_low_confidence(0.01) benign(0.403) TCGA-DU-6392-01 X 104465051 104465051 C T TEX13A Missense_Mutation p.G11R 0.36 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 X 104728341 104728341 C T IL1RAPL2 Missense_Mutation p.P245L 0.35 deleterious(0.01) possibly_damaging(0.534) TCGA-DU-6392-01 X 104999317 104999317 G T IL1RAPL2 Nonsense_Mutation p.E447* 0.32 TCGA-DU-6392-01 X 105193586 105193586 C A NRK Missense_Mutation p.P1459Q 0.29 deleterious(0) benign(0.355) TCGA-DU-6392-01 X 10535405 10535405 A G MID1 Silent p.H61H 0.09 TCGA-DU-6392-01 X 105450704 105450704 G A MUM1L1 Missense_Mutation p.A427T 0.45 deleterious(0.01) benign(0.436) TCGA-DU-6392-01 X 106016254 106016254 A T RNF128 Missense_Mutation p.H199L 0.31 deleterious(0) possibly_damaging(0.856) TCGA-DU-6392-01 X 106108807 106108807 G T TBC1D8B Missense_Mutation p.D791Y 0.38 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 X 106171575 106171575 C T CLDN2 Silent p.S39S 0.38 TCGA-DU-6392-01 X 106171742 106171742 G A CLDN2 Missense_Mutation p.C95Y 0.12 deleterious(0.02) probably_damaging(0.961) TCGA-DU-6392-01 X 106185816 106185816 G T MORC4 Missense_Mutation p.L769M 0.07 tolerated(0.26) benign(0.041) TCGA-DU-6392-01 X 106797649 106797649 G A FRMPD3 Missense_Mutation p.C259Y 0.33 deleterious(0) probably_damaging(0.991) TCGA-DU-6392-01 X 106819612 106819612 G A FRMPD3 Missense_Mutation p.R488H 0.40 deleterious(0.02) benign(0.08) TCGA-DU-6392-01 X 106841052 106841052 G A FRMPD3 Missense_Mutation p.G681E 0.67 tolerated(0.11) possibly_damaging(0.771) TCGA-DU-6392-01 X 106845450 106845450 G A FRMPD3 Missense_Mutation p.R1427H 0.50 deleterious(0.03) benign(0.015) TCGA-DU-6392-01 X 107018362 107018362 C A TSC22D3 Missense_Mutation p.Q96H 0.08 deleterious(0.01) probably_damaging(0.93) TCGA-DU-6392-01 X 107225148 107225148 G A TEX13B Silent p.G70G 0.32 TCGA-DU-6392-01 X 107288394 107288394 C T VSIG1 Silent p.L12L 0.33 TCGA-DU-6392-01 X 107301375 107301375 G T VSIG1 Nonsense_Mutation p.E53* 0.36 TCGA-DU-6392-01 X 107310334 107310334 A C VSIG1 Missense_Mutation p.N164H 0.41 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 X 107381354 107381354 G T ATG4A Missense_Mutation p.K249N 0.36 tolerated(0.45) benign(0.208) TCGA-DU-6392-01 X 107420134 107420134 C A COL4A6 Nonsense_Mutation p.G876* 0.08 TCGA-DU-6392-01 X 107436903 107436903 G A COL4A6 Missense_Mutation p.P344S 0.37 unknown(0) TCGA-DU-6392-01 X 107925050 107925050 C T COL4A5 Missense_Mutation p.P1383L 0.35 benign(0.127) TCGA-DU-6392-01 X 107976513 107976513 A - IRS4 Frame_Shift_Del p.F1021Sfs*5 0.09 TCGA-DU-6392-01 X 107977146 107977146 G T IRS4 Missense_Mutation p.S810Y 0.06 deleterious(0) unknown(0) TCGA-DU-6392-01 X 107977626 107977626 C A IRS4 Missense_Mutation p.G650V 0.34 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 X 108718910 108718910 C T GUCY2F Missense_Mutation p.D86N 0.06 deleterious(0.04) benign(0.017) TCGA-DU-6392-01 X 108917675 108917675 C A ACSL4 Nonsense_Mutation p.G361* 0.09 TCGA-DU-6392-01 X 109468245 109468245 T C AMMECR1 Intron 0.47 TCGA-DU-6392-01 X 109694910 109694910 C A RGAG1 Silent p.P355P 0.11 TCGA-DU-6392-01 X 109695589 109695589 G A RGAG1 Missense_Mutation p.A582T 0.34 tolerated(0.1) benign(0.084) TCGA-DU-6392-01 X 109764812 109764812 T A TDGF1P3 RNA 0.11 TCGA-DU-6392-01 X 109924728 109924728 C T CHRDL1 Missense_Mutation p.V380I 0.14 tolerated(0.58) benign(0.064) TCGA-DU-6392-01 X 110366334 110366334 G A PAK3 Translation_Start_Site p.M1? 0.08 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-DU-6392-01 X 110391030 110391030 G T PAK3 Missense_Mutation p.K150N 0.32 tolerated(0.08) possibly_damaging(0.875) TCGA-DU-6392-01 X 110406218 110406218 G T PAK3 Nonsense_Mutation p.E218* 0.09 TCGA-DU-6392-01 X 110494308 110494308 C T CAPN6 Missense_Mutation p.R332H 0.41 tolerated(0.2) benign(0) TCGA-DU-6392-01 X 110544858 110544858 C T DCX 3'UTR 0.06 TCGA-DU-6392-01 X 110653599 110653599 C T DCX Missense_Mutation p.E91K 0.08 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-DU-6392-01 X 110925385 110925385 G A ALG13 Missense_Mutation p.R36Q 0.34 tolerated_low_confidence(0.34) benign(0.036) TCGA-DU-6392-01 X 110928326 110928326 C A ALG13 Silent p.T126T 0.41 TCGA-DU-6392-01 X 110970862 110970862 G A ALG13 Missense_Mutation p.R704H 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-DU-6392-01 X 111090401 111090401 G A TRPC5 Silent p.I547I 0.07 TCGA-DU-6392-01 X 111195533 111195533 G A TRPC5 Missense_Mutation p.A39V 0.37 deleterious(0.01) probably_damaging(0.955) TCGA-DU-6392-01 X 111195637 111195637 C T TRPC5 Silent p.L4L 0.11 TCGA-DU-6392-01 X 11135463 11135463 C T HCCS Missense_Mutation p.P110L 0.43 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 111914520 111914520 G T LHFPL1 Silent p.L33L 0.06 TCGA-DU-6392-01 X 112054488 112054488 C A AMOT Missense_Mutation p.R509M 0.08 unknown(0) TCGA-DU-6392-01 X 11316260 11316260 C T AMELX Missense_Mutation p.A47V 0.08 tolerated_low_confidence(0.39) benign(0.047) TCGA-DU-6392-01 X 113961365 113961365 C T HTR2C Missense_Mutation p.A7V 0.50 tolerated_low_confidence(0.55) benign(0) TCGA-DU-6392-01 X 115304694 115304694 T A AGTR2 3'UTR 0.36 TCGA-DU-6392-01 X 115569065 115569065 C T SLC6A14 Silent p.Y52Y 0.41 TCGA-DU-6392-01 X 115573968 115573968 A - SLC6A14 Frame_Shift_Del p.N155Ifs*15 0.32 TCGA-DU-6392-01 X 117033091 117033091 G A KLHL13 Missense_Mutation p.A586V 0.42 deleterious(0.02) possibly_damaging(0.852) TCGA-DU-6392-01 X 117718715 117718715 C T DOCK11 Missense_Mutation p.T538I 0.42 tolerated(0.4) benign(0.006) TCGA-DU-6392-01 X 117752685 117752685 G A DOCK11 Silent p.Q1155Q 0.30 TCGA-DU-6392-01 X 11783771 11783771 G T MSL3 Missense_Mutation p.S365I 0.41 tolerated(0.07) probably_damaging(0.984) TCGA-DU-6392-01 X 11783816 11783816 G T MSL3 Missense_Mutation p.S380I 0.34 deleterious(0.05) benign(0.424) TCGA-DU-6392-01 X 117925884 117925884 C A IL13RA1 3'UTR 0.55 TCGA-DU-6392-01 X 117959201 117959201 G A ZCCHC12 5'UTR 0.30 TCGA-DU-6392-01 X 118146891 118146891 G A LONRF3 Intron 0.38 TCGA-DU-6392-01 X 118227693 118227693 C T KIAA1210 Missense_Mutation p.E474K 0.36 deleterious(0.03) benign(0.393) TCGA-DU-6392-01 X 118242365 118242365 A G KIAA1210 Missense_Mutation p.S283P 0.43 deleterious(0.02) benign(0.173) TCGA-DU-6392-01 X 118694317 118694317 G T CXorf56 Silent p.P52P 0.05 TCGA-DU-6392-01 X 118723315 118723315 T A NKRF Nonstop_Mutation p.*706Cext*48 0.17 TCGA-DU-6392-01 X 118724034 118724034 C T NKRF Missense_Mutation p.V467M 0.46 deleterious(0) probably_damaging(0.992) TCGA-DU-6392-01 X 118921355 118921355 A C RPL39 Intron 0.09 TCGA-DU-6392-01 X 119048673 119048674 - A AKAP14 Frame_Shift_Ins p.C94Mfs*32 0.30 TCGA-DU-6392-01 X 119387918 119387918 G T ZBTB33 Missense_Mutation p.Q216H 0.34 deleterious(0.03) benign(0.002) TCGA-DU-6392-01 X 119419070 119419070 C A TMEM255A Missense_Mutation p.V166F 0.09 deleterious(0.02) possibly_damaging(0.861) TCGA-DU-6392-01 X 119500594 119500594 T G ATP1B4 Missense_Mutation p.L93R 0.50 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 X 119509350 119509350 A G ATP1B4 Missense_Mutation p.N229S 0.06 tolerated(0.19) possibly_damaging(0.475) TCGA-DU-6392-01 X 119672534 119672534 C T CUL4B Missense_Mutation p.M629I 0.08 deleterious(0.01) possibly_damaging(0.745) TCGA-DU-6392-01 X 119674287 119674287 G T CUL4B Missense_Mutation p.A543D 0.35 deleterious(0.01) possibly_damaging(0.455) TCGA-DU-6392-01 X 119678008 119678008 G A CUL4B Silent p.L396L 0.35 TCGA-DU-6392-01 X 119693958 119693958 A G CUL4B Missense_Mutation p.L197S 0.32 deleterious(0) possibly_damaging(0.787) TCGA-DU-6392-01 X 120183302 120183302 C A GLUD2 3'UTR 0.38 TCGA-DU-6392-01 X 122536867 122536867 G A GRIA3 Missense_Mutation p.G368E 0.32 deleterious(0) possibly_damaging(0.512) TCGA-DU-6392-01 X 122538588 122538588 C T GRIA3 Silent p.N441N 0.32 TCGA-DU-6392-01 X 122755386 122755387 - T THOC2 Frame_Shift_Ins p.E1280Rfs*18 0.20 TCGA-DU-6392-01 X 122757749 122757749 A C THOC2 Missense_Mutation p.L1131R 0.10 deleterious(0) probably_damaging(0.986) TCGA-DU-6392-01 X 122765688 122765688 C T THOC2 Missense_Mutation p.V778M 0.35 deleterious(0) possibly_damaging(0.546) TCGA-DU-6392-01 X 122837343 122837343 C T THOC2 Missense_Mutation p.D79N 0.30 deleterious(0.02) benign(0.085) TCGA-DU-6392-01 X 123019851 123019851 T C XIAP Silent p.G113G 0.41 TCGA-DU-6392-01 X 123025089 123025089 T C XIAP Missense_Mutation p.C327R 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 123185164 123185164 G T STAG2 Splice_Site p.X373_splice 0.08 TCGA-DU-6392-01 X 123185184 123185184 C T STAG2 Missense_Mutation p.T379I 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-DU-6392-01 X 123517894 123517894 G A TENM1 Missense_Mutation p.S2296L 0.40 deleterious(0.01) benign(0.176) TCGA-DU-6392-01 X 123554644 123554644 T A TENM1 Missense_Mutation p.K1500M 0.10 tolerated(0.12) probably_damaging(0.94) TCGA-DU-6392-01 X 124097529 124097529 C T TENM1 Missense_Mutation p.S25N 0.40 tolerated_low_confidence(0.13) possibly_damaging(0.459) TCGA-DU-6392-01 X 125685396 125685396 C A DCAF12L1 Missense_Mutation p.R399M 0.34 deleterious(0.01) possibly_damaging(0.664) TCGA-DU-6392-01 X 125685778 125685778 C T DCAF12L1 Missense_Mutation p.G272S 0.36 tolerated(0.62) benign(0.01) TCGA-DU-6392-01 X 12627867 12627867 C T FRMPD4 Silent p.D62D 0.39 TCGA-DU-6392-01 X 12701657 12701657 C A FRMPD4 Missense_Mutation p.P175H 0.46 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 127185265 127185265 G A ACTRT1 Silent p.L307L 0.07 TCGA-DU-6392-01 X 12722503 12722503 C A FRMPD4 Missense_Mutation p.L366I 0.27 tolerated(0.14) probably_damaging(0.98) TCGA-DU-6392-01 X 12734712 12734712 G A FRMPD4 Missense_Mutation p.E712K 0.36 tolerated_low_confidence(0.17) benign(0.027) TCGA-DU-6392-01 X 12734904 12734904 T C FRMPD4 Missense_Mutation p.S776P 0.11 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 X 12735195 12735195 C A FRMPD4 Missense_Mutation p.L873M 0.08 deleterious(0) probably_damaging(0.996) TCGA-DU-6392-01 X 12736536 12736536 G A FRMPD4 Silent p.K1197K 0.09 TCGA-DU-6392-01 X 12828159 12828159 G A PRPS2 Missense_Mutation p.V145M 0.31 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 X 12828249 12828249 G A PRPS2 Missense_Mutation p.A175T 0.36 deleterious(0.02) probably_damaging(0.953) TCGA-DU-6392-01 X 12837722 12837722 C T PRPS2 Silent p.G212G 0.36 TCGA-DU-6392-01 X 128630769 128630769 C A SMARCA1 Missense_Mutation p.E528D 0.11 tolerated(0.15) benign(0.008) TCGA-DU-6392-01 X 128692974 128692974 T C OCRL Missense_Mutation p.F240L 0.08 tolerated(0.07) probably_damaging(0.999) TCGA-DU-6392-01 X 128723882 128723882 C T OCRL Nonsense_Mutation p.R844* 0.08 TCGA-DU-6392-01 X 12904193 12904193 G A TLR7 Missense_Mutation p.C189Y 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 X 129053459 129053459 G - UTP14A Frame_Shift_Del p.S249Ifs*8 0.09 TCGA-DU-6392-01 X 129139263 129139263 G A BCORL1 Missense_Mutation p.R19Q 0.33 unknown(0) TCGA-DU-6392-01 X 129184752 129184752 A G BCORL1 Missense_Mutation p.Y1560C 0.11 probably_damaging(0.998) TCGA-DU-6392-01 X 129208064 129208064 A G ELF4 Silent p.N100N 0.07 TCGA-DU-6392-01 X 129215306 129215306 C T ELF4 5'UTR 0.28 TCGA-DU-6392-01 X 129265659 129265659 C A AIFM1 Nonsense_Mutation p.E522* 0.05 TCGA-DU-6392-01 X 129290550 129290550 G T AIFM1 Missense_Mutation p.P45H 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.764) TCGA-DU-6392-01 X 129370553 129370553 G T ZNF280C Missense_Mutation p.T185N 0.08 tolerated(1) benign(0.006) TCGA-DU-6392-01 X 12937546 12937546 G A TLR8 Silent p.E129E 0.40 TCGA-DU-6392-01 X 129480618 129480618 G A SLC25A14 Silent p.A90A 0.38 TCGA-DU-6392-01 X 129492622 129492622 G A SLC25A14 Missense_Mutation p.M169I 0.38 deleterious(0) possibly_damaging(0.692) TCGA-DU-6392-01 X 129499620 129499620 C A SLC25A14 Silent p.L275L 0.35 TCGA-DU-6392-01 X 129546780 129546780 G T RBMX2 Silent p.R309R 0.29 TCGA-DU-6392-01 X 129765465 129765465 G T ENOX2 Missense_Mutation p.S531Y 0.31 tolerated(0.07) probably_damaging(0.998) TCGA-DU-6392-01 X 130219946 130219947 - A ARHGAP36 Frame_Shift_Ins p.G391Rfs*16 0.33 TCGA-DU-6392-01 X 131228096 131228096 G A FRMD7 Missense_Mutation p.A119V 0.39 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 X 131351031 131351031 G A RAP2C Missense_Mutation p.S89F 0.36 deleterious(0) possibly_damaging(0.729) TCGA-DU-6392-01 X 1314993 1314993 G A CRLF2 Missense_Mutation p.T223M 0.41 tolerated(0.25) possibly_damaging(0.521) TCGA-DU-6392-01 X 132092321 132092321 G A HS6ST2 Missense_Mutation p.R104C 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DU-6392-01 X 132092388 132092388 G A HS6ST2 Silent p.A81A 0.29 TCGA-DU-6392-01 X 132161017 132161017 A G USP26 Missense_Mutation p.F411S 0.30 tolerated(0.58) benign(0.005) TCGA-DU-6392-01 X 132161316 132161316 C A USP26 Missense_Mutation p.Q311H 0.41 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 132351436 132351436 G A TFDP3 Silent p.S284S 0.31 TCGA-DU-6392-01 X 132351787 132351787 G T TFDP3 Silent p.A167A 0.34 TCGA-DU-6392-01 X 132887606 132887606 C A GPC3 Missense_Mutation p.R312I 0.08 deleterious(0) possibly_damaging(0.522) TCGA-DU-6392-01 X 133379664 133379664 C T CCDC160 Silent p.L278L 0.21 TCGA-DU-6392-01 X 133549255 133549255 C T PHF6 Intron 0.37 TCGA-DU-6392-01 X 134023125 134023125 A G MOSPD1 3'UTR 0.11 TCGA-DU-6392-01 X 134033182 134033182 A T MOSPD1 Silent p.T56T 0.10 TCGA-DU-6392-01 X 134305083 134305083 G T CT55 Missense_Mutation p.L5M 0.45 deleterious(0.04) probably_damaging(0.996) TCGA-DU-6392-01 X 134421643 134421643 G T ZNF75D Missense_Mutation p.P320H 0.10 tolerated(1) benign(0) TCGA-DU-6392-01 X 134421742 134421742 G T ZNF75D Missense_Mutation p.P287H 0.08 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 X 134424994 134424994 A G ZNF75D Missense_Mutation p.L255P 0.35 tolerated(0.16) benign(0) TCGA-DU-6392-01 X 134494386 134494386 G T ZNF449 Missense_Mutation p.K314N 0.47 deleterious(0.04) probably_damaging(0.989) TCGA-DU-6392-01 X 134495045 134495046 - A ZNF449 3'UTR 0.25 TCGA-DU-6392-01 X 134681061 134681061 G A DDX26B Splice_Site p.X205_splice 0.37 TCGA-DU-6392-01 X 134707898 134707898 A G DDX26B Missense_Mutation p.D514G 0.44 deleterious(0.02) probably_damaging(0.971) TCGA-DU-6392-01 X 134711196 134711196 C T DDX26B Missense_Mutation p.P618S 0.38 tolerated(0.39) benign(0.001) TCGA-DU-6392-01 X 134711350 134711350 C T DDX26B Missense_Mutation p.T669I 0.13 tolerated(0.16) possibly_damaging(0.72) TCGA-DU-6392-01 X 135067917 135067917 C A SLC9A6 Missense_Mutation p.L86I 0.07 deleterious(0.04) probably_damaging(0.998) TCGA-DU-6392-01 X 135314090 135314090 G A MAP7D3 Silent p.S342S 0.36 TCGA-DU-6392-01 X 135326876 135326876 C A MAP7D3 Missense_Mutation p.R111I 0.31 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 X 135405040 135405040 C T GPR112 Silent p.C58C 0.06 TCGA-DU-6392-01 X 135405204 135405204 A G GPR112 Missense_Mutation p.H113R 0.11 tolerated(0.13) benign(0.004) TCGA-DU-6392-01 X 135427530 135427530 G T GPR112 Missense_Mutation p.K555N 0.35 deleterious(0) benign(0.045) TCGA-DU-6392-01 X 135428148 135428148 A - GPR112 Frame_Shift_Del p.T763Qfs*14 0.09 TCGA-DU-6392-01 X 135429126 135429126 C T GPR112 Silent p.T1087T 0.38 TCGA-DU-6392-01 X 135430313 135430313 A G GPR112 Missense_Mutation p.D1483G 0.07 deleterious(0.03) benign(0.018) TCGA-DU-6392-01 X 135570188 135570188 C T BRS3 5'UTR 0.40 TCGA-DU-6392-01 X 135574578 135574578 C T BRS3 3'UTR 0.27 TCGA-DU-6392-01 X 135581814 135581814 G A HTATSF1 Missense_Mutation p.A82T 0.34 tolerated(0.06) benign(0.028) TCGA-DU-6392-01 X 135593701 135593701 C A HTATSF1 Missense_Mutation p.N599K 0.31 tolerated_low_confidence(1) unknown(0) TCGA-DU-6392-01 X 135741287 135741287 G T CD40LG Nonsense_Mutation p.G167* 0.40 TCGA-DU-6392-01 X 135750135 135750135 G A ARHGEF6 3'UTR 0.23 TCGA-DU-6392-01 X 135750301 135750301 C T ARHGEF6 Missense_Mutation p.E740K 0.27 deleterious(0.05) benign(0.251) TCGA-DU-6392-01 X 135956658 135956658 A G RBMX Intron 0.35 TCGA-DU-6392-01 X 135957742 135957742 G A RBMX Missense_Mutation p.P182S 0.41 deleterious(0.04) probably_damaging(1) TCGA-DU-6392-01 X 136113612 136113612 G A GPR101 Silent p.L74L 0.23 TCGA-DU-6392-01 X 136649846 136649846 C - ZIC3 Frame_Shift_Del p.P333Rfs*75 0.26 TCGA-DU-6392-01 X 13680768 13680768 T C TCEANC Silent p.D77D 0.10 TCGA-DU-6392-01 X 13681173 13681173 C T TCEANC Silent p.Y212Y 0.11 TCGA-DU-6392-01 X 13727016 13727016 G A RAB9A Missense_Mutation p.V51M 0.35 deleterious(0.01) possibly_damaging(0.515) TCGA-DU-6392-01 X 13775826 13775826 C T OFD1 Missense_Mutation p.R487W 0.38 deleterious(0.04) benign(0.004) TCGA-DU-6392-01 X 137939699 137939699 G T FGF13 Missense_Mutation p.H64Q 0.07 tolerated(0.45) benign(0) TCGA-DU-6392-01 X 137939758 137939758 C T FGF13 Missense_Mutation p.E45K 0.11 tolerated_low_confidence(0.16) benign(0.003) TCGA-DU-6392-01 X 138630556 138630556 G T F9 Missense_Mutation p.E142D 0.09 tolerated(0.35) benign(0.001) TCGA-DU-6392-01 X 138864820 138864820 C A ATP11C Missense_Mutation p.R616I 0.36 tolerated(0.16) benign(0.148) TCGA-DU-6392-01 X 139038581 139038581 C T CXorf66 Missense_Mutation p.S187N 0.09 tolerated(0.79) benign(0.059) TCGA-DU-6392-01 X 139586632 139586632 C T SOX3 Silent p.V198V 0.11 TCGA-DU-6392-01 X 14026970 14026970 G A GEMIN8 3'UTR 0.30 TCGA-DU-6392-01 X 140969286 140969286 C A MAGEC3 Missense_Mutation p.L205I 0.12 tolerated(1) benign(0.002) TCGA-DU-6392-01 X 140983167 140983167 G A MAGEC3 Missense_Mutation p.S341N 0.36 tolerated(0.4) benign(0.044) TCGA-DU-6392-01 X 140994996 140994996 G T MAGEC1 Silent p.G602G 0.40 TCGA-DU-6392-01 X 141291666 141291666 C A MAGEC2 Missense_Mutation p.E36D 0.39 tolerated(0.44) benign(0.176) TCGA-DU-6392-01 X 1413223 1413223 C T CSF2RA Nonsense_Mutation p.R217* 0.13 TCGA-DU-6392-01 X 142113804 142113804 G T SPANXN4 Nonsense_Mutation p.E2* 0.39 TCGA-DU-6392-01 X 144337285 144337285 G T SPANXN1 Missense_Mutation p.R57M 0.33 deleterious(0) probably_damaging(0.93) TCGA-DU-6392-01 X 146312538 146312538 A T MIR507 RNA 0.08 TCGA-DU-6392-01 X 146341179 146341179 T C MIR509-3 RNA 0.29 TCGA-DU-6392-01 X 1464255 1464255 G A IL3RA Silent p.Q37Q 0.34 TCGA-DU-6392-01 X 147013976 147013976 A G FMR1 Silent p.E221E 0.37 TCGA-DU-6392-01 X 147014219 147014219 A - FMR1 Frame_Shift_Del p.A275Lfs*11 0.08 TCGA-DU-6392-01 X 147026457 147026457 T C FMR1 Missense_Mutation p.S514P 0.56 deleterious(0.01) probably_damaging(0.989) TCGA-DU-6392-01 X 147084731 147084731 T A FMR1NB Nonsense_Mutation p.Y96* 0.31 TCGA-DU-6392-01 X 147088322 147088322 G A FMR1NB Silent p.S166S 0.09 TCGA-DU-6392-01 X 147582604 147582604 G A AFF2 5'UTR 0.12 TCGA-DU-6392-01 X 148035176 148035176 C T AFF2 Silent p.S488S 0.40 TCGA-DU-6392-01 X 1484094 1484094 C T IL3RA Missense_Mutation p.R275W 0.39 deleterious(0.01) possibly_damaging(0.798) TCGA-DU-6392-01 X 148585691 148585691 G A IDS Missense_Mutation p.A79V 0.48 tolerated(0.26) possibly_damaging(0.547) TCGA-DU-6392-01 X 14863291 14863291 T G FANCB Silent p.P538P 0.36 TCGA-DU-6392-01 X 14868629 14868629 C T FANCB Silent p.K498K 0.38 TCGA-DU-6392-01 X 148797686 148797686 C A MAGEA11 Missense_Mutation p.F180L 0.28 tolerated(0.09) benign(0.001) TCGA-DU-6392-01 X 149613746 149613746 G A MAMLD1 5'UTR 0.29 TCGA-DU-6392-01 X 149639226 149639226 G A MAMLD1 Missense_Mutation p.E436K 0.28 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 X 149671607 149671607 C T MAMLD1 Intron 0.06 TCGA-DU-6392-01 X 149809827 149809827 C T MTM1 Missense_Mutation p.P205L 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 149905115 149905115 C T MTMR1 Missense_Mutation p.L369F 0.31 deleterious(0.03) benign(0.157) TCGA-DU-6392-01 X 149905195 149905195 C T MTMR1 Silent p.I395I 0.36 TCGA-DU-6392-01 X 149937476 149937476 C T CD99L2 3'UTR 0.30 TCGA-DU-6392-01 X 149945940 149945940 C A CD99L2 Missense_Mutation p.G171V 0.36 deleterious(0.01) probably_damaging(0.988) TCGA-DU-6392-01 X 149963705 149963705 C T CD99L2 Missense_Mutation p.R135H 0.31 tolerated(0.56) benign(0.013) TCGA-DU-6392-01 X 150154607 150154607 T C HMGB3 Silent p.Y78Y 0.14 TCGA-DU-6392-01 X 150572153 150572153 C A VMA21 Missense_Mutation p.A35D 0.34 deleterious(0.03) probably_damaging(0.93) TCGA-DU-6392-01 X 1508334 1508334 G A SLC25A6 Missense_Mutation p.P133L 0.41 deleterious(0.02) possibly_damaging(0.796) TCGA-DU-6392-01 X 150912736 150912736 C T CNGA2 Silent p.N587N 0.40 TCGA-DU-6392-01 X 151092966 151092966 G T MAGEA4 Missense_Mutation p.R277M 0.08 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 X 151138183 151138183 C A GABRE Missense_Mutation p.E100D 0.36 tolerated(1) probably_damaging(0.983) TCGA-DU-6392-01 X 151284076 151284076 G A RP11-1007I13.4 Intron 0.37 TCGA-DU-6392-01 X 151424261 151424261 G T GABRA3 Silent p.L180L 0.08 TCGA-DU-6392-01 X 151806759 151806759 G A GABRQ Missense_Mutation p.E35K 0.14 deleterious_low_confidence(0.04) benign(0.226) TCGA-DU-6392-01 X 151870016 151870016 G T MAGEA6 Missense_Mutation p.D236Y 0.08 deleterious(0.04) benign(0.003) TCGA-DU-6392-01 X 152159087 152159087 G A PNMA5 Silent p.S352S 0.40 TCGA-DU-6392-01 X 152159206 152159206 C A PNMA5 Missense_Mutation p.G313W 0.35 deleterious(0.01) probably_damaging(0.977) TCGA-DU-6392-01 X 152159756 152159756 G A PNMA5 Silent p.L129L 0.06 TCGA-DU-6392-01 X 152226090 152226090 C A PNMA3 Silent p.S226S 0.06 TCGA-DU-6392-01 X 152226235 152226235 C T PNMA3 Missense_Mutation p.L275F 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 152612497 152612497 G A ZNF275 Silent p.Q118Q 0.42 TCGA-DU-6392-01 X 15266936 15266936 A G ASB9 Silent p.A230A 0.31 TCGA-DU-6392-01 X 152710594 152710594 G A TREX2 Missense_Mutation p.R99W 0.48 deleterious(0.01) possibly_damaging(0.801) TCGA-DU-6392-01 X 152770099 152770099 C A BGN Missense_Mutation p.L4M 0.11 tolerated_low_confidence(0.11) benign(0.188) TCGA-DU-6392-01 X 152806914 152806914 G A ATP2B3 Silent p.V102V 0.31 TCGA-DU-6392-01 X 152821652 152821652 A G ATP2B3 Missense_Mutation p.E735G 0.14 deleterious(0.01) probably_damaging(0.936) TCGA-DU-6392-01 X 152827665 152827665 C A ATP2B3 Missense_Mutation p.L1042M 0.46 deleterious(0.01) possibly_damaging(0.824) TCGA-DU-6392-01 X 152861628 152861628 G A FAM58A Missense_Mutation p.R42W 0.46 deleterious(0.04) benign(0.033) TCGA-DU-6392-01 X 152914912 152914912 G A DUSP9 Missense_Mutation p.R200Q 0.31 tolerated(1) benign(0) TCGA-DU-6392-01 X 152936198 152936198 C A PNCK Splice_Site p.X381_splice 0.55 TCGA-DU-6392-01 X 152938140 152938140 G A PNCK Silent p.S110S 0.42 TCGA-DU-6392-01 X 152991339 152991339 C T ABCD1 Silent p.A206A 0.38 TCGA-DU-6392-01 X 153005567 153005567 C T ABCD1 Missense_Mutation p.L504F 0.42 deleterious(0.01) possibly_damaging(0.725) TCGA-DU-6392-01 X 153005669 153005669 C T ABCD1 Missense_Mutation p.R538C 0.31 tolerated(0.07) benign(0.005) TCGA-DU-6392-01 X 153035557 153035557 C T PLXNB3 Missense_Mutation p.S570F 0.36 tolerated(0.08) benign(0.029) TCGA-DU-6392-01 X 153037030 153037030 G A PLXNB3 Missense_Mutation p.G836S 0.33 tolerated(0.37) benign(0.022) TCGA-DU-6392-01 X 153037429 153037429 G A PLXNB3 Silent p.R899R 0.48 TCGA-DU-6392-01 X 153040344 153040344 C T PLXNB3 Missense_Mutation p.T1337M 0.41 deleterious(0.02) possibly_damaging(0.851) TCGA-DU-6392-01 X 153055715 153055715 C T IDH3G Silent p.T56T 0.23 TCGA-DU-6392-01 X 153069203 153069203 G A PDZD4 Missense_Mutation p.R639W 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 153069213 153069213 G A PDZD4 Silent p.Y635Y 0.30 TCGA-DU-6392-01 X 153069756 153069756 G A PDZD4 Silent p.S454S 0.07 TCGA-DU-6392-01 X 153095827 153095827 G A PDZD4 5'UTR 0.47 TCGA-DU-6392-01 X 153128322 153128322 G A L1CAM Silent p.S1190S 0.37 TCGA-DU-6392-01 X 153130424 153130424 C T L1CAM Silent p.L966L 0.39 TCGA-DU-6392-01 X 153132843 153132843 G A L1CAM Missense_Mutation p.P702L 0.31 tolerated(0.24) benign(0.003) TCGA-DU-6392-01 X 153134067 153134067 C T L1CAM Missense_Mutation p.A499T 0.32 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 X 153138122 153138122 G T L1CAM Missense_Mutation p.S41Y 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 X 153171513 153171513 G T AVPR2 Missense_Mutation p.G185C 0.10 tolerated(0.06) possibly_damaging(0.823) TCGA-DU-6392-01 X 153171565 153171565 G A AVPR2 Missense_Mutation p.R202H 0.14 deleterious(0.01) possibly_damaging(0.501) TCGA-DU-6392-01 X 153171772 153171772 G T AVPR2 Missense_Mutation p.R271M 0.44 deleterious(0) probably_damaging(0.971) TCGA-DU-6392-01 X 153176003 153176003 G A ARHGAP4 Missense_Mutation p.P667S 0.39 tolerated(0.32) benign(0.072) TCGA-DU-6392-01 X 153215027 153215027 C T HCFC1 Silent p.K2015K 0.33 TCGA-DU-6392-01 X 153218063 153218063 G A HCFC1 Missense_Mutation p.T1615M 0.33 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DU-6392-01 X 153223328 153223328 G T HCFC1 Missense_Mutation p.L680M 0.36 deleterious(0.02) probably_damaging(0.993) TCGA-DU-6392-01 X 153227081 153227081 G A HCFC1 Silent p.G272G 0.42 TCGA-DU-6392-01 X 153296256 153296256 G A MECP2 Silent p.S353S 0.42 TCGA-DU-6392-01 X 153296283 153296283 G A MECP2 Silent p.S344S 0.42 TCGA-DU-6392-01 X 15349838 15349838 T C PIGA Missense_Mutation p.H72R 0.37 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 X 15350018 15350018 C T PIGA Missense_Mutation p.R12H 0.36 tolerated_low_confidence(0.28) benign(0.115) TCGA-DU-6392-01 X 153582630 153582630 C T FLNA Missense_Mutation p.A1816T 0.42 tolerated(0.13) benign(0.028) TCGA-DU-6392-01 X 153583193 153583193 C T FLNA Silent p.T1739T 0.28 TCGA-DU-6392-01 X 153587864 153587864 G A FLNA Missense_Mutation p.T1377I 0.36 deleterious(0) possibly_damaging(0.677) TCGA-DU-6392-01 X 153588193 153588193 G A FLNA Missense_Mutation p.R1296C 0.14 tolerated(0.11) benign(0.003) TCGA-DU-6392-01 X 153589697 153589697 C T FLNA Silent p.V1062V 0.43 TCGA-DU-6392-01 X 153592950 153592950 G T FLNA Missense_Mutation p.L656I 0.29 tolerated(0.06) benign(0.184) TCGA-DU-6392-01 X 153596036 153596036 C A FLNA Missense_Mutation p.Q231H 0.38 deleterious(0.02) probably_damaging(0.978) TCGA-DU-6392-01 X 153609120 153609120 A T EMD Missense_Mutation p.D136V 0.31 deleterious(0) benign(0.215) TCGA-DU-6392-01 X 153609559 153609559 G T EMD 3'UTR 0.15 TCGA-DU-6392-01 X 153627702 153627702 C T RPL10 Missense_Mutation p.P16L 0.43 tolerated(0.06) benign(0.105) TCGA-DU-6392-01 X 153627882 153627882 T G RPL10 Missense_Mutation p.F46C 0.13 deleterious(0) probably_damaging(0.994) TCGA-DU-6392-01 X 153628708 153628708 C T RPL10 Intron 0.35 TCGA-DU-6392-01 X 153628932 153628932 C T RPL10 Missense_Mutation p.R153C 0.34 tolerated(0.06) benign(0.01) TCGA-DU-6392-01 X 153648575 153648575 G A TAZ Missense_Mutation p.S224N 0.11 tolerated(0.38) benign(0.001) TCGA-DU-6392-01 X 153660611 153660611 G T ATP6AP1 Splice_Site p.X122_splice 0.28 TCGA-DU-6392-01 X 153663813 153663813 C T ATP6AP1 Nonsense_Mutation p.Q389* 0.11 TCGA-DU-6392-01 X 153669466 153669466 C T GDI1 Missense_Mutation p.T248I 0.36 deleterious(0.01) benign(0.14) TCGA-DU-6392-01 X 153692523 153692523 G T PLXNA3 Silent p.V565V 0.36 TCGA-DU-6392-01 X 153696663 153696663 G T PLXNA3 Missense_Mutation p.E1327D 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-DU-6392-01 X 153699861 153699861 C A PLXNA3 Silent p.S1800S 0.09 TCGA-DU-6392-01 X 153714147 153714147 G A UBL4A Missense_Mutation p.A109V 0.37 deleterious(0.05) benign(0.002) TCGA-DU-6392-01 X 153717057 153717057 C T SLC10A3 Missense_Mutation p.E75K 0.08 tolerated(0.08) benign(0.427) TCGA-DU-6392-01 X 153762600 153762600 G A G6PD Silent p.I229I 0.41 TCGA-DU-6392-01 X 153774302 153774302 G A G6PD Silent p.G53G 0.46 TCGA-DU-6392-01 X 153881751 153881751 G A CTAG2 Silent p.G13G 0.44 TCGA-DU-6392-01 X 153940612 153940612 G A GAB3 Missense_Mutation p.R321W 0.37 tolerated(0.08) benign(0.021) TCGA-DU-6392-01 X 153940894 153940894 G T GAB3 Missense_Mutation p.L227M 0.10 tolerated(0.05) benign(0.126) TCGA-DU-6392-01 X 153941611 153941611 G T GAB3 Missense_Mutation p.S156Y 0.12 deleterious(0.01) benign(0.372) TCGA-DU-6392-01 X 153993731 153993731 G A DKC1 Missense_Mutation p.A33T 0.36 tolerated(0.4) benign(0.001) TCGA-DU-6392-01 X 153994250 153994250 G T DKC1 Missense_Mutation p.K80N 0.30 tolerated(0.16) benign(0.075) TCGA-DU-6392-01 X 154004499 154004499 C A DKC1 Missense_Mutation p.P459H 0.44 deleterious_low_confidence(0.02) benign(0.03) TCGA-DU-6392-01 X 154088874 154088874 G A F8 Missense_Mutation p.P2245S 0.41 deleterious(0.01) benign(0.131) TCGA-DU-6392-01 X 154091391 154091391 G T F8 Missense_Mutation p.L2181I 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 154132706 154132706 C T F8 Missense_Mutation p.E1894K 0.34 deleterious(0.02) probably_damaging(1) TCGA-DU-6392-01 X 154133205 154133205 T G F8 Missense_Mutation p.K1823Q 0.08 tolerated(0.28) benign(0.007) TCGA-DU-6392-01 X 154133299 154133299 C A F8 Splice_Site p.X1792_splice 0.34 TCGA-DU-6392-01 X 154158779 154158779 C T F8 Missense_Mutation p.V1096I 0.44 tolerated(0.35) benign(0.005) TCGA-DU-6392-01 X 154159626 154159626 C T F8 Silent p.L813L 0.33 TCGA-DU-6392-01 X 154194307 154194307 T C F8 Missense_Mutation p.I461V 0.36 tolerated(0.46) benign(0.008) TCGA-DU-6392-01 X 154456691 154456691 G A VBP1 Missense_Mutation p.R104K 0.40 tolerated(0.12) possibly_damaging(0.519) TCGA-DU-6392-01 X 154528182 154528182 G T CLIC2 Missense_Mutation p.P70H 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 154754131 154754131 G A TMLHE Missense_Mutation p.T115I 0.37 tolerated(0.18) benign(0.281) TCGA-DU-6392-01 X 155231119 155231119 G A IL9R Intron 0.27 TCGA-DU-6392-01 X 15527469 15527469 A T BMX Missense_Mutation p.K52N 0.20 deleterious(0) probably_damaging(0.96) TCGA-DU-6392-01 X 15584454 15584454 A T ACE2 Missense_Mutation p.I679N 0.40 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-DU-6392-01 X 15596323 15596323 C T ACE2 Missense_Mutation p.A396T 0.36 deleterious(0.01) probably_damaging(1) TCGA-DU-6392-01 X 15618961 15618961 G A ACE2 Missense_Mutation p.A25V 0.38 deleterious(0.01) benign(0.432) TCGA-DU-6392-01 X 1584701 1584701 C T P2RY8 Missense_Mutation p.A251T 0.29 tolerated(0.14) possibly_damaging(0.806) TCGA-DU-6392-01 X 1585028 1585028 C T P2RY8 Missense_Mutation p.A142T 0.47 tolerated(0.06) possibly_damaging(0.678) TCGA-DU-6392-01 X 16142062 16142062 A - GRPR 5'UTR 0.09 TCGA-DU-6392-01 X 16170513 16170513 C T GRPR Silent p.H300H 0.37 TCGA-DU-6392-01 X 16170846 16170846 C A GRPR 3'UTR 0.48 TCGA-DU-6392-01 X 16863952 16863952 A G RBBP7 Missense_Mutation p.M447T 0.09 tolerated(0.18) benign(0.288) TCGA-DU-6392-01 X 16870701 16870701 G A RBBP7 Silent p.F356F 0.40 TCGA-DU-6392-01 X 16888212 16888212 G A RBBP7 5'Flank 0.43 TCGA-DU-6392-01 X 17065504 17065504 G A REPS2 Missense_Mutation p.S269N 0.36 tolerated(0.14) benign(0.004) TCGA-DU-6392-01 X 1712574 1712574 C A AKAP17A Silent p.T73T 0.08 TCGA-DU-6392-01 X 1712677 1712677 G A AKAP17A Missense_Mutation p.D108N 0.35 tolerated(0.07) probably_damaging(0.97) TCGA-DU-6392-01 X 1713084 1713084 C T AKAP17A Silent p.G243G 0.08 TCGA-DU-6392-01 X 17710490 17710490 G T NHS Missense_Mutation p.A252S 0.43 tolerated(0.4) benign(0.209) TCGA-DU-6392-01 X 17744111 17744111 T C NHS Missense_Mutation p.S608P 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 X 17744597 17744597 G A NHS Missense_Mutation p.D770N 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 X 17745136 17745136 G A NHS Silent p.T949T 0.37 TCGA-DU-6392-01 X 17818660 17818660 C T RAI2 Missense_Mutation p.A491T 0.08 tolerated(0.43) unknown(0) TCGA-DU-6392-01 X 17819072 17819072 G A RAI2 Silent p.S353S 0.37 TCGA-DU-6392-01 X 18195787 18195787 C T BEND2 Missense_Mutation p.R511H 0.40 tolerated(0.54) benign(0.008) TCGA-DU-6392-01 X 18234728 18234728 C T BEND2 Missense_Mutation p.A51T 0.12 tolerated_low_confidence(0.26) benign(0.278) TCGA-DU-6392-01 X 18264933 18264933 G A SCML2 Missense_Mutation p.A529V 0.08 tolerated(0.47) benign(0.004) TCGA-DU-6392-01 X 18276362 18276362 C T SCML2 Missense_Mutation p.V359I 0.45 tolerated(0.28) probably_damaging(0.928) TCGA-DU-6392-01 X 18622549 18622549 C A CDKL5 Missense_Mutation p.S502Y 0.10 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-DU-6392-01 X 18622863 18622863 C T CDKL5 Missense_Mutation p.R607C 0.36 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-DU-6392-01 X 18643246 18643246 A G CDKL5 Splice_Site p.X793_splice 0.10 TCGA-DU-6392-01 X 18665341 18665341 T C RS1 Missense_Mutation p.N99S 0.36 tolerated(0.73) benign(0.079) TCGA-DU-6392-01 X 18668631 18668631 C T CDKL5 Missense_Mutation p.L967F 0.46 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-DU-6392-01 X 18768031 18768031 G A PPEF1 Silent p.T119T 0.35 TCGA-DU-6392-01 X 18912469 18912469 G A PHKA2 Silent p.R1130R 0.33 TCGA-DU-6392-01 X 18926165 18926165 G A PHKA2 Silent p.S790S 0.12 TCGA-DU-6392-01 X 18938252 18938252 G A PHKA2 Missense_Mutation p.P621S 0.28 tolerated(0.31) benign(0.057) TCGA-DU-6392-01 X 18954256 18954256 G A PHKA2 Nonsense_Mutation p.R352* 0.27 TCGA-DU-6392-01 X 18966863 18966863 G T PHKA2 Missense_Mutation p.A179D 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-DU-6392-01 X 19013148 19013148 G T GPR64 Missense_Mutation p.T912N 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-DU-6392-01 X 19389497 19389497 T C MAP3K15 Missense_Mutation p.Q1087R 0.10 tolerated(0.1) probably_damaging(0.987) TCGA-DU-6392-01 X 19389624 19389624 C T MAP3K15 Missense_Mutation p.V1045I 0.07 tolerated(0.45) benign(0.009) TCGA-DU-6392-01 X 19626117 19626117 C T SH3KBP1 Missense_Mutation p.R315Q 0.47 tolerated(1) probably_damaging(0.99) TCGA-DU-6392-01 X 19713850 19713850 C A SH3KBP1 Nonsense_Mutation p.G134* 0.34 TCGA-DU-6392-01 X 19983521 19983521 C A CXorf23 Missense_Mutation p.K305N 0.49 tolerated(0.06) probably_damaging(0.913) TCGA-DU-6392-01 X 20034272 20034272 C T MAP7D2 Silent p.E528E 0.22 TCGA-DU-6392-01 X 20060732 20060732 G A MAP7D2 Missense_Mutation p.R299W 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 20150322 20150322 T C EIF1AX Silent p.A105A 0.33 TCGA-DU-6392-01 X 20185731 20185731 G A RPS6KA3 Silent p.T526T 0.32 TCGA-DU-6392-01 X 20190905 20190905 T C RPS6KA3 Missense_Mutation p.R438G 0.12 deleterious(0) probably_damaging(0.987) TCGA-DU-6392-01 X 21609230 21609230 C T CNKSR2 Missense_Mutation p.A583V 0.46 deleterious(0.03) probably_damaging(0.989) TCGA-DU-6392-01 X 21627188 21627188 G T CNKSR2 Splice_Site p.X716_splice 0.12 TCGA-DU-6392-01 X 21675840 21675840 G A KLHL34 Missense_Mutation p.R23C 0.50 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 21896174 21896174 G T MBTPS2 Missense_Mutation p.D329Y 0.09 deleterious(0.01) benign(0.395) TCGA-DU-6392-01 X 21900676 21900676 A G MBTPS2 Missense_Mutation p.D488G 0.36 tolerated(0.19) benign(0.079) TCGA-DU-6392-01 X 21985378 21985378 G A SMS Silent p.S38S 0.24 TCGA-DU-6392-01 X 21990049 21990049 G A SMS Missense_Mutation p.V69M 0.45 deleterious(0) possibly_damaging(0.493) TCGA-DU-6392-01 X 22115094 22115094 C T PHEX Nonsense_Mutation p.R291* 0.28 TCGA-DU-6392-01 X 224523 224523 C T GTPBP6 Missense_Mutation p.V155I 0.39 tolerated(0.8) benign(0.206) TCGA-DU-6392-01 X 23018282 23018282 C T DDX53 Silent p.F36F 0.35 TCGA-DU-6392-01 X 23353126 23353126 G A PTCHD1 Missense_Mutation p.R45H 0.40 tolerated(0.22) probably_damaging(0.991) TCGA-DU-6392-01 X 23398059 23398059 G A PTCHD1 Missense_Mutation p.D235N 0.39 tolerated(0.46) benign(0.041) TCGA-DU-6392-01 X 23398314 23398314 C A PTCHD1 Missense_Mutation p.L320I 0.09 tolerated(0.48) possibly_damaging(0.793) TCGA-DU-6392-01 X 23411054 23411054 G T PTCHD1 Missense_Mutation p.E473D 0.28 tolerated(0.51) benign(0.072) TCGA-DU-6392-01 X 23411710 23411710 A G PTCHD1 Missense_Mutation p.Y692C 0.44 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 23685739 23685739 C T PRDX4 Nonsense_Mutation p.R18* 0.50 TCGA-DU-6392-01 X 23704477 23704477 C A PRDX4 3'UTR 0.13 TCGA-DU-6392-01 X 23953347 23953347 C A CXorf58 Missense_Mutation p.S197Y 0.45 tolerated(1) benign(0.099) TCGA-DU-6392-01 X 24007070 24007070 A G KLHL15 Silent p.N261N 0.40 TCGA-DU-6392-01 X 2406829 2406829 C A ZBED1 Missense_Mutation p.Q644H 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-DU-6392-01 X 2407352 2407352 T C ZBED1 Missense_Mutation p.N470S 0.41 deleterious(0.02) probably_damaging(0.929) TCGA-DU-6392-01 X 2408758 2408758 C T ZBED1 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) possibly_damaging(0.544) TCGA-DU-6392-01 X 24197419 24197419 G A ZFX Missense_Mutation p.D60N 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-DU-6392-01 X 24227140 24227140 C T ZFX Missense_Mutation p.S406F 0.43 deleterious(0.03) possibly_damaging(0.828) TCGA-DU-6392-01 X 24228932 24228932 G T ZFX Missense_Mutation p.E619D 0.36 tolerated(0.11) benign(0.029) TCGA-DU-6392-01 X 24512864 24512864 G T PDK3 Missense_Mutation p.D38Y 0.09 deleterious(0.03) benign(0.332) TCGA-DU-6392-01 X 24552111 24552111 G T PDK3 Missense_Mutation p.K381N 0.36 tolerated(0.25) benign(0.002) TCGA-DU-6392-01 X 24690692 24690692 G A PCYT1B Missense_Mutation p.R20C 0.37 deleterious(0) possibly_damaging(0.462) TCGA-DU-6392-01 X 24762686 24762687 - TA POLA1 Intron 0.10 TCGA-DU-6392-01 X 24859935 24859935 C A POLA1 Silent p.V1295V 0.10 TCGA-DU-6392-01 X 26158034 26158034 A G MAGEB18 Missense_Mutation p.E311G 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-DU-6392-01 X 26213143 26213143 G A MAGEB6 Missense_Mutation p.A394T 0.38 deleterious(0.03) probably_damaging(0.978) TCGA-DU-6392-01 X 26213263 26213263 G T MAGEB6 3'UTR 0.12 TCGA-DU-6392-01 X 2658989 2658989 C T CD99 3'UTR 0.44 TCGA-DU-6392-01 X 2761277 2761277 C T GYG2 Silent p.L42L 0.40 TCGA-DU-6392-01 X 2779761 2779761 G T GYG2 Missense_Mutation p.D377Y 0.43 deleterious(0) possibly_damaging(0.759) TCGA-DU-6392-01 X 27997794 27997794 C T DCAF8L1 Missense_Mutation p.R553H 0.32 tolerated(0.87) benign(0.001) TCGA-DU-6392-01 X 27998291 27998291 A G DCAF8L1 Silent p.C387C 0.10 TCGA-DU-6392-01 X 27998474 27998474 C T DCAF8L1 Silent p.V326V 0.47 TCGA-DU-6392-01 X 27999353 27999353 C T DCAF8L1 Silent p.T33T 0.37 TCGA-DU-6392-01 X 2832617 2832617 C T ARSD Intron 0.52 TCGA-DU-6392-01 X 2836236 2836236 G A ARSD Missense_Mutation p.R158C 0.17 deleterious(0) possibly_damaging(0.842) TCGA-DU-6392-01 X 2867535 2867535 C T ARSE Missense_Mutation p.V222I 0.44 tolerated(0.28) benign(0.003) TCGA-DU-6392-01 X 2924665 2924665 C T ARSH Silent p.N4N 0.36 TCGA-DU-6392-01 X 2951115 2951115 G T ARSH Missense_Mutation p.G460C 0.08 deleterious(0) probably_damaging(0.954) TCGA-DU-6392-01 X 30237282 30237282 C A MAGEB2 Silent p.S195S 0.35 TCGA-DU-6392-01 X 30254597 30254597 C T MAGEB3 Missense_Mutation p.L186F 0.38 deleterious(0.05) probably_damaging(0.999) TCGA-DU-6392-01 X 30255066 30255066 G A MAGEB3 Missense_Mutation p.S342N 0.33 tolerated(0.14) benign(0.18) TCGA-DU-6392-01 X 30261290 30261290 G A MAGEB4 Missense_Mutation p.M346I 0.30 tolerated_low_confidence(0.09) unknown(0) TCGA-DU-6392-01 X 30327013 30327013 C A NR0B1 Silent p.T156T 0.38 TCGA-DU-6392-01 X 30577669 30577669 T A CXorf21 Missense_Mutation p.R268S 0.10 deleterious(0) benign(0.068) TCGA-DU-6392-01 X 30864137 30864137 C A TAB3 Intron 0.45 TCGA-DU-6392-01 X 30872594 30872594 T C TAB3 Silent p.Q396Q 0.31 TCGA-DU-6392-01 X 31089585 31089585 C T FTHL17 Silent p.P162P 0.34 TCGA-DU-6392-01 X 31645873 31645873 C T DMD Missense_Mutation p.A2712T 0.28 possibly_damaging(0.682) TCGA-DU-6392-01 X 31986618 31986618 C T DMD Missense_Mutation p.G2151D 0.13 probably_damaging(0.969) TCGA-DU-6392-01 X 3229611 3229611 C T MXRA5 Silent p.V2211V 0.12 TCGA-DU-6392-01 X 3235911 3235911 G A MXRA5 Silent p.D1937D 0.09 TCGA-DU-6392-01 X 32382809 32382809 C A DMD Nonsense_Mutation p.E1682* 0.35 TCGA-DU-6392-01 X 3238348 3238348 G A MXRA5 Missense_Mutation p.P1793L 0.50 deleterious(0.01) benign(0.242) TCGA-DU-6392-01 X 3241892 3241892 T C MXRA5 Missense_Mutation p.I612V 0.28 tolerated(0.17) benign(0.06) TCGA-DU-6392-01 X 3248419 3248419 C T MXRA5 Missense_Mutation p.V117M 0.39 deleterious(0) probably_damaging(0.962) TCGA-DU-6392-01 X 34149819 34149819 C T FAM47A Missense_Mutation p.E193K 0.14 tolerated(0.79) probably_damaging(0.956) TCGA-DU-6392-01 X 34150406 34150406 G A FAM47A 5'UTR 0.37 TCGA-DU-6392-01 X 34657422 34657422 G T TMEM47 Silent p.I103I 0.30 TCGA-DU-6392-01 X 36090059 36090059 C A CHDC2 Missense_Mutation p.A54D 0.31 tolerated(0.07) benign(0.438) TCGA-DU-6392-01 X 36162799 36162799 G T CHDC2 Missense_Mutation p.R461I 0.41 deleterious_low_confidence(0.03) benign(0.007) TCGA-DU-6392-01 X 37027307 37027307 C A FAM47C Missense_Mutation p.P275H 0.33 deleterious(0) possibly_damaging(0.599) TCGA-DU-6392-01 X 37515055 37515055 G A LANCL3 Missense_Mutation p.E230K 0.41 tolerated(0.05) possibly_damaging(0.527) TCGA-DU-6392-01 X 37642787 37642787 C T CYBB Silent p.F62F 0.11 TCGA-DU-6392-01 X 39922014 39922014 C A BCOR Missense_Mutation p.E1386D 0.18 tolerated(0.17) benign(0.001) TCGA-DU-6392-01 X 39933021 39933021 C T BCOR Silent p.S526S 0.43 TCGA-DU-6392-01 X 40458973 40458973 C T ATP6AP2 Missense_Mutation p.L240F 0.34 deleterious(0) benign(0.216) TCGA-DU-6392-01 X 41025363 41025363 C T USP9X Nonsense_Mutation p.R742* 0.34 TCGA-DU-6392-01 X 41027339 41027339 G A USP9X Missense_Mutation p.G835D 0.33 tolerated(0.4) benign(0.274) TCGA-DU-6392-01 X 41029755 41029755 C A USP9X Silent p.S970S 0.10 TCGA-DU-6392-01 X 41048650 41048650 C A USP9X Missense_Mutation p.P1300Q 0.10 deleterious(0.03) probably_damaging(0.994) TCGA-DU-6392-01 X 41048719 41048719 G A USP9X Missense_Mutation p.C1323Y 0.35 deleterious(0.01) probably_damaging(0.982) TCGA-DU-6392-01 X 41073892 41073892 T C USP9X Missense_Mutation p.L1754S 0.09 deleterious(0) possibly_damaging(0.614) TCGA-DU-6392-01 X 41091710 41091710 G A USP9X Missense_Mutation p.G2549D 0.34 tolerated_low_confidence(0.21) benign(0.002) TCGA-DU-6392-01 X 41333679 41333679 G T NYX Missense_Mutation p.G325C 0.11 deleterious(0.02) possibly_damaging(0.8) TCGA-DU-6392-01 X 44091870 44091870 C A EFHC2 Nonsense_Mutation p.E493* 0.40 TCGA-DU-6392-01 X 44919321 44919321 C T KDM6A Missense_Mutation p.P417S 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-DU-6392-01 X 46322661 46322661 C A KRBOX4 Silent p.I57I 0.31 TCGA-DU-6392-01 X 46713008 46713008 G A RP2 Missense_Mutation p.C67Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 47002075 47002075 G T NDUFB11 Missense_Mutation p.F92L 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-DU-6392-01 X 47039292 47039292 C T RBM10 Silent p.R305R 0.55 TCGA-DU-6392-01 X 47045959 47045959 G A RBM10 Silent p.L918L 0.47 TCGA-DU-6392-01 X 47065841 47065841 C T UBA1 Nonsense_Mutation p.Q646* 0.15 TCGA-DU-6392-01 X 47272259 47272259 A C ZNF157 Missense_Mutation p.I263L 0.10 tolerated(0.33) possibly_damaging(0.525) TCGA-DU-6392-01 X 47272857 47272857 G A ZNF157 Missense_Mutation p.R462Q 0.49 deleterious(0.01) probably_damaging(0.989) TCGA-DU-6392-01 X 47307380 47307380 G A ZNF41 Missense_Mutation p.H597Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 X 47308164 47308164 G T ZNF41 Silent p.V335V 0.25 TCGA-DU-6392-01 X 47422624 47422624 G T ARAF Splice_Site p.X33_splice 0.39 TCGA-DU-6392-01 X 47485822 47485822 C T CFP Missense_Mutation p.R346H 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 47486268 47486268 G A CFP Missense_Mutation p.R282W 0.24 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 47496428 47496428 G T ELK1 Missense_Mutation p.A391D 0.27 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 X 47497276 47497276 C T ELK1 Silent p.E320E 0.50 TCGA-DU-6392-01 X 47517256 47517256 C T UXT Silent p.V47V 0.11 TCGA-DU-6392-01 X 47774563 47774563 G A ZNF81 Missense_Mutation p.G173E 0.31 tolerated(0.46) benign(0.001) TCGA-DU-6392-01 X 47775287 47775287 C T ZNF81 Silent p.H414H 0.08 TCGA-DU-6392-01 X 47835672 47835672 T G ZNF182 Missense_Mutation p.K605T 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6392-01 X 48054794 48054794 T C SSX5 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-DU-6392-01 X 48125807 48125807 G A SSX1 Silent p.E184E 0.30 TCGA-DU-6392-01 X 48368273 48368273 C T PORCN Missense_Mutation p.A22V 0.22 tolerated(1) benign(0.001) TCGA-DU-6392-01 X 48369778 48369778 C A PORCN Missense_Mutation p.L78I 0.10 deleterious(0.02) probably_damaging(0.968) TCGA-DU-6392-01 X 48370738 48370738 A T PORCN Missense_Mutation p.K133M 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 48372938 48372938 A C PORCN Missense_Mutation p.N291H 0.10 tolerated(0.44) benign(0.014) TCGA-DU-6392-01 X 48382148 48382148 G A EBP 5'UTR 0.62 TCGA-DU-6392-01 X 48418637 48418638 - C TBC1D25 Frame_Shift_Ins p.S450Qfs*30 0.32 TCGA-DU-6392-01 X 48557420 48557420 C T SUV39H1 Silent p.C49C 0.23 TCGA-DU-6392-01 X 48663861 48663861 G A HDAC6 Missense_Mutation p.E110K 0.41 deleterious(0.02) benign(0.219) TCGA-DU-6392-01 X 48772384 48772384 G T PIM2 Missense_Mutation p.L170M 0.08 deleterious(0) probably_damaging(0.995) TCGA-DU-6392-01 X 48780953 48780953 C A OTUD5 Missense_Mutation p.L517F 0.25 tolerated(0.06) possibly_damaging(0.791) TCGA-DU-6392-01 X 48819929 48819929 G A KCND1 Silent p.G619G 0.38 TCGA-DU-6392-01 X 48933405 48933405 G A AF196779.12 Missense_Mutation p.A73V 0.21 tolerated(0.09) benign(0.174) TCGA-DU-6392-01 X 49020905 49020905 G A MAGIX Intron 0.12 TCGA-DU-6392-01 X 49030697 49030697 G A PLP2 Missense_Mutation p.A121T 0.43 tolerated(0.09) possibly_damaging(0.834) TCGA-DU-6392-01 X 49062226 49062226 C T CACNA1F Silent p.P1851P 0.50 TCGA-DU-6392-01 X 49063466 49063466 C T CACNA1F Missense_Mutation p.R1755Q 0.32 tolerated(0.39) benign(0.002) TCGA-DU-6392-01 X 49068444 49068444 G A CACNA1F Silent p.F1349F 0.41 TCGA-DU-6392-01 X 49143182 49143182 T C PPP1R3F Missense_Mutation p.V677A 0.38 tolerated_low_confidence(0.16) benign(0.03) TCGA-DU-6392-01 X 49143232 49143232 G T PPP1R3F Missense_Mutation p.A694S 0.42 tolerated_low_confidence(0.14) benign(0.034) TCGA-DU-6392-01 X 49777913 49777913 A G CLCN5 Intron 0.11 TCGA-DU-6392-01 X 49846431 49846431 T G CLCN5 Missense_Mutation p.V287G 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 49851517 49851517 T A CLCN5 Missense_Mutation p.F516Y 0.43 deleterious(0.04) probably_damaging(0.996) TCGA-DU-6392-01 X 49856787 49856787 C T CLCN5 Nonsense_Mutation p.R788* 0.30 TCGA-DU-6392-01 X 49963374 49963374 G C AKAP4 Missense_Mutation p.S19R 0.40 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 X 50031781 50031781 C T CCNB3 Missense_Mutation p.T33M 0.37 tolerated(0.25) benign(0.001) TCGA-DU-6392-01 X 50053092 50053092 A G CCNB3 Silent p.A641A 0.17 TCGA-DU-6392-01 X 50053116 50053116 G A CCNB3 Silent p.L649L 0.21 TCGA-DU-6392-01 X 50054133 50054133 G A CCNB3 Silent p.K988K 0.42 TCGA-DU-6392-01 X 50085330 50085330 A C CCNB3 Missense_Mutation p.K1216Q 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 50119030 50119030 G T DGKK RNA 0.33 TCGA-DU-6392-01 X 50125503 50125503 C A DGKK RNA 0.10 TCGA-DU-6392-01 X 50144082 50144082 C T DGKK RNA 0.73 TCGA-DU-6392-01 X 50144083 50144083 G A DGKK RNA 0.27 TCGA-DU-6392-01 X 50350483 50350483 C A SHROOM4 Missense_Mutation p.R1220M 0.33 deleterious(0.04) benign(0.209) TCGA-DU-6392-01 X 50659372 50659372 A G BMP15 Missense_Mutation p.Y315C 0.10 deleterious(0.04) probably_damaging(0.991) TCGA-DU-6392-01 X 51239031 51239031 C T NUDT11 Missense_Mutation p.R89H 0.48 tolerated(0.15) possibly_damaging(0.51) TCGA-DU-6392-01 X 51486831 51486831 G A GSPT2 Missense_Mutation p.A37T 0.51 tolerated_low_confidence(0.25) benign(0.003) TCGA-DU-6392-01 X 51488437 51488437 G A GSPT2 Missense_Mutation p.R572Q 0.31 tolerated(0.09) possibly_damaging(0.571) TCGA-DU-6392-01 X 51638333 51638333 C T MAGED1 Missense_Mutation p.A133V 0.19 tolerated_low_confidence(0.09) unknown(0) TCGA-DU-6392-01 X 51640312 51640312 G C MAGED1 Missense_Mutation p.K533N 0.34 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-DU-6392-01 X 51640976 51640976 T C MAGED1 Missense_Mutation p.L607P 0.40 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DU-6392-01 X 51641416 51641416 C T MAGED1 Missense_Mutation p.R648C 0.33 tolerated_low_confidence(0.08) benign(0.354) TCGA-DU-6392-01 X 53105788 53105788 G A GPR173 5'UTR 0.26 TCGA-DU-6392-01 X 53114479 53114479 G T TSPYL2 Missense_Mutation p.R405I 0.11 deleterious(0) possibly_damaging(0.894) TCGA-DU-6392-01 X 53117082 53117082 C T TSPYL2 Silent p.N681N 0.26 TCGA-DU-6392-01 X 53222110 53222110 G T KDM5C 3'UTR 0.14 TCGA-DU-6392-01 X 53222210 53222210 G A KDM5C Missense_Mutation p.S1541F 0.56 deleterious_low_confidence(0) benign(0.049) TCGA-DU-6392-01 X 53230839 53230839 C T KDM5C Missense_Mutation p.A652T 0.30 deleterious(0) probably_damaging(0.993) TCGA-DU-6392-01 X 53239948 53239948 T A KDM5C Missense_Mutation p.K498M 0.14 deleterious(0) probably_damaging(0.972) TCGA-DU-6392-01 X 53240002 53240002 G A KDM5C Missense_Mutation p.P480L 0.09 deleterious(0) probably_damaging(0.99) TCGA-DU-6392-01 X 53241017 53241017 G A KDM5C Silent p.G398G 0.52 TCGA-DU-6392-01 X 53285038 53285038 G A IQSEC2 Missense_Mutation p.R315C 0.41 deleterious(0.01) probably_damaging(0.944) TCGA-DU-6392-01 X 53423221 53423221 G A SMC1A Silent p.L930L 0.39 TCGA-DU-6392-01 X 53426541 53426541 T C SMC1A Silent p.K844K 0.22 TCGA-DU-6392-01 X 53440256 53440256 C T SMC1A Missense_Mutation p.D181N 0.30 deleterious(0.04) probably_damaging(0.955) TCGA-DU-6392-01 X 53561480 53561480 A C HUWE1 Missense_Mutation p.I4276M 0.25 unknown(0) TCGA-DU-6392-01 X 53612074 53612074 G A HUWE1 Silent p.S1633S 0.45 TCGA-DU-6392-01 X 53641542 53641542 C T HUWE1 Missense_Mutation p.M738I 0.37 benign(0.295) TCGA-DU-6392-01 X 53654813 53654813 G A HUWE1 Silent p.G420G 0.45 TCGA-DU-6392-01 X 53965633 53965633 G A PHF8 Silent p.G1047G 0.30 TCGA-DU-6392-01 X 54011402 54011402 G A PHF8 Silent p.N832N 0.38 TCGA-DU-6392-01 X 54012203 54012203 T C PHF8 Intron 0.31 TCGA-DU-6392-01 X 54319604 54319604 G A WNK3 Missense_Mutation p.S617F 0.25 deleterious(0) possibly_damaging(0.594) TCGA-DU-6392-01 X 54321078 54321078 G A WNK3 Missense_Mutation p.T534I 0.37 tolerated(0.15) benign(0.011) TCGA-DU-6392-01 X 54359998 54359998 C T WNK3 Missense_Mutation p.A37T 0.42 tolerated_low_confidence(0.15) benign(0.003) TCGA-DU-6392-01 X 54472773 54472773 G A FGD1 Silent p.D885D 0.32 TCGA-DU-6392-01 X 54784182 54784182 A G ITIH6 Silent p.T775T 0.09 TCGA-DU-6392-01 X 54800551 54800551 T C ITIH6 Missense_Mutation p.D289G 0.12 deleterious(0) possibly_damaging(0.848) TCGA-DU-6392-01 X 54955239 54955239 C T TRO Silent p.G694G 0.39 TCGA-DU-6392-01 X 54960307 54960307 C T PFKFB1 Missense_Mutation p.E435K 0.28 possibly_damaging(0.59) TCGA-DU-6392-01 X 54975618 54975618 C T PFKFB1 Missense_Mutation p.G295S 0.52 benign(0.001) TCGA-DU-6392-01 X 54984796 54984796 C A PFKFB1 Splice_Site p.X154_splice 0.29 TCGA-DU-6392-01 X 55026892 55026892 C T APEX2 Missense_Mutation p.R13W 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 55478845 55478845 C T MAGEH1 Missense_Mutation p.A13V 0.50 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-DU-6392-01 X 55514742 55514742 G T USP51 Missense_Mutation p.L211M 0.41 deleterious(0.02) probably_damaging(0.969) TCGA-DU-6392-01 X 55515233 55515233 G A USP51 Missense_Mutation p.A47V 0.41 tolerated_low_confidence(0.06) unknown(0) TCGA-DU-6392-01 X 55650155 55650155 A C FOXR2 Missense_Mutation p.K4T 0.11 deleterious(0.01) possibly_damaging(0.859) TCGA-DU-6392-01 X 55650714 55650714 G A FOXR2 Nonsense_Mutation p.W190* 0.21 TCGA-DU-6392-01 X 55757807 55757807 T G RRAGB Missense_Mutation p.F130V 0.16 deleterious(0) probably_damaging(0.977) TCGA-DU-6392-01 X 56590893 56590893 C T UBQLN2 Missense_Mutation p.S196L 0.45 deleterious(0) possibly_damaging(0.783) TCGA-DU-6392-01 X 57337037 57337037 C T FAAH2 Missense_Mutation p.A96V 0.38 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 57936083 57936083 G A ZXDA Silent p.L258L 0.42 TCGA-DU-6392-01 X 5821135 5821135 C T NLGN4X Silent p.T528T 0.35 TCGA-DU-6392-01 X 5821215 5821215 T C NLGN4X Missense_Mutation p.I502V 0.42 tolerated(1) benign(0.001) TCGA-DU-6392-01 X 62875507 62875507 C A ARHGEF9 Missense_Mutation p.K389N 0.39 deleterious(0) possibly_damaging(0.6) TCGA-DU-6392-01 X 63410130 63410130 G T AMER1 Missense_Mutation p.P1013T 0.42 tolerated(0.1) benign(0.004) TCGA-DU-6392-01 X 63410256 63410256 C T AMER1 Missense_Mutation p.G971S 0.37 tolerated(0.4) benign(0.169) TCGA-DU-6392-01 X 63410721 63410721 G A AMER1 Missense_Mutation p.R816W 0.52 deleterious(0) possibly_damaging(0.874) TCGA-DU-6392-01 X 63410757 63410757 G A AMER1 Missense_Mutation p.P804S 0.39 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 63412964 63412964 G T AMER1 Missense_Mutation p.T68N 0.10 deleterious(0) possibly_damaging(0.867) TCGA-DU-6392-01 X 63444766 63444766 G A ASB12 Silent p.L255L 0.28 TCGA-DU-6392-01 X 63445176 63445176 G T ASB12 Missense_Mutation p.L119M 0.59 deleterious(0.01) probably_damaging(0.985) TCGA-DU-6392-01 X 63569916 63569916 G T MTMR8 Missense_Mutation p.P168H 0.06 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 64708943 64708943 C T ZC3H12B Missense_Mutation p.R88C 0.34 tolerated(0.14) benign(0.004) TCGA-DU-6392-01 X 64743531 64743531 G T LAS1L Missense_Mutation p.L453M 0.44 deleterious(0) possibly_damaging(0.863) TCGA-DU-6392-01 X 65428014 65428014 C T HEPH Missense_Mutation p.A884V 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 66765080 66765080 G A AR Missense_Mutation p.R31H 0.33 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-DU-6392-01 X 67417060 67417060 G T OPHN1 Missense_Mutation p.L358I 0.14 deleterious(0.01) probably_damaging(0.956) TCGA-DU-6392-01 X 67731767 67731767 G A YIPF6 Missense_Mutation p.R45H 0.34 tolerated(0.29) benign(0) TCGA-DU-6392-01 X 67741284 67741284 G A YIPF6 Missense_Mutation p.V127I 0.10 tolerated(0.42) benign(0.023) TCGA-DU-6392-01 X 67937777 67937777 C T STARD8 Missense_Mutation p.R341C 0.54 deleterious(0.01) benign(0.059) TCGA-DU-6392-01 X 67939137 67939137 C T STARD8 Missense_Mutation p.R596W 0.23 deleterious(0.04) benign(0.021) TCGA-DU-6392-01 X 68060409 68060409 A G EFNB1 Missense_Mutation p.E318G 0.42 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 69282892 69282892 G A OTUD6A Missense_Mutation p.R173H 0.21 tolerated(0.09) benign(0.43) TCGA-DU-6392-01 X 69459754 69459754 C A AWAT1 Missense_Mutation p.L268M 0.37 tolerated(0.06) benign(0.33) TCGA-DU-6392-01 X 69478906 69478906 C T P2RY4 Missense_Mutation p.R190Q 0.36 tolerated(0.37) benign(0.004) TCGA-DU-6392-01 X 69479340 69479340 G T P2RY4 Silent p.V45V 0.36 TCGA-DU-6392-01 X 69495966 69495966 C T ARR3 Silent p.G60G 0.40 TCGA-DU-6392-01 X 69637830 69637830 G T KIF4A Missense_Mutation p.K1116N 0.40 deleterious(0.02) possibly_damaging(0.844) TCGA-DU-6392-01 X 69646847 69646847 C T GDPD2 Nonsense_Mutation p.R230* 0.45 TCGA-DU-6392-01 X 69652787 69652787 A G GDPD2 Missense_Mutation p.T573A 0.31 tolerated(0.51) benign(0.001) TCGA-DU-6392-01 X 69712375 69712376 - A DLG3 Frame_Shift_Ins p.K570Efs*19 0.29 TCGA-DU-6392-01 X 70145594 70145594 C A SLC7A3 3'UTR 0.43 TCGA-DU-6392-01 X 70325979 70325979 C T CXorf65 Missense_Mutation p.D41N 0.47 deleterious(0.03) probably_damaging(0.993) TCGA-DU-6392-01 X 70339947 70339947 T C MED12 Silent p.I160I 0.08 TCGA-DU-6392-01 X 70347223 70347223 G A MED12 Missense_Mutation p.D963N 0.45 benign(0.266) TCGA-DU-6392-01 X 70349265 70349265 C A MED12 Missense_Mutation p.A1226D 0.57 probably_damaging(0.993) TCGA-DU-6392-01 X 70349570 70349570 A G MED12 Silent p.G1244G 0.67 TCGA-DU-6392-01 X 70352363 70352363 G A MED12 Missense_Mutation p.E1464K 0.50 benign(0.183) TCGA-DU-6392-01 X 70354681 70354681 C A MED12 Missense_Mutation p.L1616M 0.08 probably_damaging(0.989) TCGA-DU-6392-01 X 70460821 70460821 G A ZMYM3 Missense_Mutation p.A1353V 0.07 tolerated(1) benign(0.068) TCGA-DU-6392-01 X 70463819 70463819 G A ZMYM3 Missense_Mutation p.R1098C 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-DU-6392-01 X 70465908 70465908 C T ZMYM3 Silent p.V871V 0.21 TCGA-DU-6392-01 X 70469915 70469915 G A ZMYM3 Silent p.A404A 0.27 TCGA-DU-6392-01 X 70511777 70511777 C T NONO Silent p.G101G 0.31 TCGA-DU-6392-01 X 70519876 70519876 C T NONO Missense_Mutation p.R456C 0.41 tolerated(0.08) benign(0.097) TCGA-DU-6392-01 X 70523713 70523713 C A ITGB1BP2 Missense_Mutation p.F197L 0.24 deleterious(0.01) benign(0.386) TCGA-DU-6392-01 X 70586309 70586309 G A TAF1 Missense_Mutation p.A49T 0.47 tolerated(0.56) benign(0.108) TCGA-DU-6392-01 X 70627449 70627449 G A TAF1 Missense_Mutation p.R1398H 0.36 deleterious(0) benign(0.308) TCGA-DU-6392-01 X 70627487 70627487 G A TAF1 Missense_Mutation p.E1411K 0.27 deleterious(0.02) benign(0.016) TCGA-DU-6392-01 X 70757810 70757810 G A OGT Missense_Mutation p.R117H 0.11 deleterious(0.04) benign(0.128) TCGA-DU-6392-01 X 70783181 70783181 G A OGT Missense_Mutation p.M756I 0.42 tolerated_low_confidence(0.33) benign(0) TCGA-DU-6392-01 X 70787571 70787571 C A OGT Silent p.L937L 0.19 TCGA-DU-6392-01 X 71350056 71350056 C A RGAG4 Missense_Mutation p.E445D 0.41 tolerated_low_confidence(0.27) unknown(0) TCGA-DU-6392-01 X 71350537 71350537 C T RGAG4 Missense_Mutation p.R285H 0.07 tolerated(0.12) benign(0.059) TCGA-DU-6392-01 X 71359883 71359883 C T NHSL2 Missense_Mutation p.R829C 0.24 deleterious(0) probably_damaging(0.95) TCGA-DU-6392-01 X 71426140 71426140 G A ERCC6L Missense_Mutation p.T826I 0.08 tolerated(0.18) benign(0.013) TCGA-DU-6392-01 X 71427039 71427039 A G ERCC6L Silent p.N526N 0.35 TCGA-DU-6392-01 X 71494903 71494903 C A RPS4X Missense_Mutation p.K120N 0.38 tolerated(0.08) benign(0.026) TCGA-DU-6392-01 X 71522666 71522666 C T CITED1 Silent p.A44A 0.42 TCGA-DU-6392-01 X 71846867 71846867 G T PHKA1 Missense_Mutation p.L583M 0.32 deleterious(0.01) possibly_damaging(0.858) TCGA-DU-6392-01 X 71876093 71876093 C T PHKA1 Splice_Site p.X307_splice 0.48 TCGA-DU-6392-01 X 72667186 72667186 G A CDX4 Missense_Mutation p.G33R 0.23 tolerated(0.37) probably_damaging(1) TCGA-DU-6392-01 X 72667386 72667386 C T CDX4 Silent p.N99N 0.34 TCGA-DU-6392-01 X 72673430 72673430 T C CDX4 Missense_Mutation p.C194R 0.07 deleterious(0) probably_damaging(0.998) TCGA-DU-6392-01 X 73042564 73042564 G A XIST RNA 0.21 TCGA-DU-6392-01 X 73042966 73042966 T C XIST RNA 0.10 TCGA-DU-6392-01 X 73044276 73044277 - T XIST RNA 0.28 TCGA-DU-6392-01 X 73063002 73063002 G T XIST RNA 0.31 TCGA-DU-6392-01 X 73064087 73064087 A C XIST RNA 0.06 TCGA-DU-6392-01 X 73064107 73064107 C T XIST RNA 0.11 TCGA-DU-6392-01 X 73524566 73524566 G A ZCCHC13 Silent p.R155R 0.40 TCGA-DU-6392-01 X 73740957 73740957 G A SLC16A2 Missense_Mutation p.S188N 0.34 deleterious(0.01) possibly_damaging(0.597) TCGA-DU-6392-01 X 73815757 73815757 C T RLIM Missense_Mutation p.R19H 0.33 tolerated(0.24) unknown(0) TCGA-DU-6392-01 X 73959988 73959988 C A KIAA2022 Missense_Mutation p.E1468D 0.38 tolerated(0.18) benign(0.034) TCGA-DU-6392-01 X 73960267 73960267 C A KIAA2022 Missense_Mutation p.Q1375H 0.09 deleterious(0.02) possibly_damaging(0.896) TCGA-DU-6392-01 X 73960348 73960348 A G KIAA2022 Silent p.H1348H 0.11 TCGA-DU-6392-01 X 73960955 73960955 G T KIAA2022 Missense_Mutation p.S1146Y 0.42 deleterious(0.01) probably_damaging(0.977) TCGA-DU-6392-01 X 73962651 73962651 G T KIAA2022 Missense_Mutation p.L581M 0.36 tolerated(0.09) possibly_damaging(0.518) TCGA-DU-6392-01 X 74289279 74289279 A C ABCB7 Missense_Mutation p.M460R 0.11 tolerated(0.24) benign(0.029) TCGA-DU-6392-01 X 74513320 74513320 G T UPRT Missense_Mutation p.G134C 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 74517399 74517399 G A UPRT Intron 0.37 TCGA-DU-6392-01 X 74517412 74517412 T C UPRT Intron 0.48 TCGA-DU-6392-01 X 75003402 75003402 C T MAGEE2 Nonsense_Mutation p.W495* 0.09 TCGA-DU-6392-01 X 75004711 75004711 G T MAGEE2 Missense_Mutation p.S59Y 0.44 tolerated(0.09) benign(0.034) TCGA-DU-6392-01 X 75648782 75648782 G A MAGEE1 Silent p.P153P 0.54 TCGA-DU-6392-01 X 75649430 75649430 G A MAGEE1 Silent p.P369P 0.32 TCGA-DU-6392-01 X 75651070 75651070 G A MAGEE1 Missense_Mutation p.R916Q 0.39 deleterious(0.03) probably_damaging(0.988) TCGA-DU-6392-01 X 76711988 76711988 C T FGF16 Missense_Mutation p.S109F 0.33 benign(0) TCGA-DU-6392-01 X 76763827 76763827 A C ATRX 3'UTR 0.14 TCGA-DU-6392-01 X 76776353 76776353 C T ATRX Silent p.A2371A 0.39 TCGA-DU-6392-01 X 76776885 76776885 G T ATRX Missense_Mutation p.A2356D 0.08 benign(0.016) TCGA-DU-6392-01 X 76776890 76776890 A G ATRX Silent p.I2354I 0.12 TCGA-DU-6392-01 X 76875919 76875919 C T ATRX Missense_Mutation p.R1739Q 0.09 probably_damaging(0.953) TCGA-DU-6392-01 X 76907780 76907780 C T ATRX Missense_Mutation p.E1461K 0.32 benign(0.034) TCGA-DU-6392-01 X 76918942 76918942 C T ATRX Missense_Mutation p.G1350E 0.48 probably_damaging(1) TCGA-DU-6392-01 X 76939695 76939695 C A ATRX Missense_Mutation p.E351D 0.37 benign(0.004) TCGA-DU-6392-01 X 77244936 77244936 A G ATP7A Missense_Mutation p.Y273C 0.44 tolerated(0.18) benign(0.001) TCGA-DU-6392-01 X 77254148 77254148 G T ATP7A Missense_Mutation p.A504S 0.34 tolerated(0.9) possibly_damaging(0.714) TCGA-DU-6392-01 X 77266736 77266736 C T ATP7A Nonsense_Mutation p.R645* 0.33 TCGA-DU-6392-01 X 77267082 77267082 C A ATP7A Missense_Mutation p.L695I 0.32 tolerated(0.39) benign(0) TCGA-DU-6392-01 X 77528525 77528525 G A CYSLTR1 Missense_Mutation p.A240V 0.47 tolerated(1) benign(0.032) TCGA-DU-6392-01 X 77913581 77913581 C A ZCCHC5 Nonsense_Mutation p.E113* 0.17 TCGA-DU-6392-01 X 78010459 78010459 C T LPAR4 Silent p.C31C 0.39 TCGA-DU-6392-01 X 7811790 7811790 C T VCX Silent p.S118S 0.27 TCGA-DU-6392-01 X 78619024 78619024 C A ITM2A Nonsense_Mutation p.E47* 0.55 TCGA-DU-6392-01 X 7868854 7868854 G T PNPLA4 Missense_Mutation p.S212Y 0.35 deleterious(0) probably_damaging(0.91) TCGA-DU-6392-01 X 7889875 7889875 G A PNPLA4 Missense_Mutation p.S97L 0.28 tolerated(0.28) benign(0.003) TCGA-DU-6392-01 X 79699143 79699143 C T FAM46D Missense_Mutation p.P369S 0.42 tolerated_low_confidence(0.55) benign(0.055) TCGA-DU-6392-01 X 79932200 79932200 C A BRWD3 Missense_Mutation p.D1773Y 0.44 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 X 79932253 79932253 C A BRWD3 Missense_Mutation p.R1755M 0.15 deleterious_low_confidence(0) unknown(0) TCGA-DU-6392-01 X 79973207 79973207 C T BRWD3 Missense_Mutation p.R699Q 0.37 deleterious(0.03) benign(0.206) TCGA-DU-6392-01 X 82763427 82763427 G A POU3F4 Missense_Mutation p.R32H 0.25 deleterious(0) probably_damaging(0.95) TCGA-DU-6392-01 X 82763476 82763476 C T POU3F4 Silent p.S48S 0.41 TCGA-DU-6392-01 X 83723698 83723698 G A HDX Missense_Mutation p.P345S 0.40 tolerated(0.16) benign(0.062) TCGA-DU-6392-01 X 83724245 83724245 A G HDX Silent p.C162C 0.09 TCGA-DU-6392-01 X 8433557 8433557 C A VCX3B Silent p.S22S 0.10 TCGA-DU-6392-01 X 84363608 84363608 G A SATL1 Missense_Mutation p.R123C 0.42 tolerated(0.2) benign(0.001) TCGA-DU-6392-01 X 84520139 84520139 T A ZNF711 Missense_Mutation p.V265D 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6392-01 X 85403938 85403938 G A DACH2 Missense_Mutation p.G105D 0.29 deleterious(0) probably_damaging(0.988) TCGA-DU-6392-01 X 85769296 85769296 G T DACH2 Missense_Mutation p.R181M 0.21 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 86890607 86890607 C T KLHL4 Missense_Mutation p.S586L 0.41 deleterious(0.01) benign(0.444) TCGA-DU-6392-01 X 90691273 90691273 G T PABPC5 Missense_Mutation p.D233Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-DU-6392-01 X 91132650 91132650 G A PCDH11X Missense_Mutation p.V471I 0.38 tolerated(1) benign(0.004) TCGA-DU-6392-01 X 91134164 91134164 T C PCDH11X Silent p.C975C 0.22 TCGA-DU-6392-01 X 92927767 92927767 A G NAP1L3 Silent p.D179D 0.08 TCGA-DU-6392-01 X 9709462 9709463 - A GPR143 Frame_Shift_Ins p.L267Ffs*5 0.25 TCGA-DU-6392-01 X 9711662 9711662 C A GPR143 Missense_Mutation p.R237M 0.11 deleterious(0) probably_damaging(0.928) TCGA-DU-6392-01 X 9864183 9864183 G A SHROOM2 Silent p.P745P 0.38 TCGA-DU-6392-01 X 9900466 9900466 C T SHROOM2 Missense_Mutation p.S1048L 0.24 tolerated(0.27) benign(0.001) TCGA-DU-6392-01 X 9900704 9900704 G A SHROOM2 Silent p.P1127P 0.40 TCGA-DU-6392-01 X 99551661 99551661 C A PCDH19 Missense_Mutation p.D1021Y 0.25 deleterious(0) probably_damaging(0.928) TCGA-DU-6392-01 X 99848938 99848938 A G TNMD Missense_Mutation p.K76R 0.30 tolerated(0.06) possibly_damaging(0.681) TCGA-DU-6392-01 X 99887565 99887565 C A TSPAN6 Missense_Mutation p.G196C 0.50 deleterious(0) probably_damaging(0.999) TCGA-DU-6392-01 X 99901318 99901318 G T SRPX2 5'UTR 0.43 TCGA-DU-6392-01 X 99941132 99941132 G T SYTL4 Missense_Mutation p.S435Y 0.38 deleterious(0) possibly_damaging(0.739) TCGA-DU-6393-01 11 123847515 123847515 G A OR10S1 Missense_Mutation p.P295L 0.58 deleterious(0) probably_damaging(0.981) TCGA-DU-6393-01 11 32955602 32955603 - ATT QSER1 In_Frame_Ins p.L805dup 0.29 TCGA-DU-6393-01 12 13716187 13716187 G A GRIN2B Nonsense_Mutation p.R1329* 0.48 TCGA-DU-6393-01 14 22789020 22789020 A G TRAV41 Missense_Mutation p.H78R 0.32 tolerated(0.05) benign(0.001) TCGA-DU-6393-01 15 24921723 24921723 C T NPAP1 Missense_Mutation p.P237S 1.00 tolerated(0.42) benign(0.088) TCGA-DU-6393-01 15 58925546 58925546 C T ADAM10 Missense_Mutation p.G342E 0.74 deleterious(0) probably_damaging(0.999) TCGA-DU-6393-01 16 50136288 50136288 C T HEATR3 Missense_Mutation p.S621L 0.28 deleterious(0.03) benign(0.008) TCGA-DU-6393-01 17 26107803 26107803 C T NOS2 Missense_Mutation p.E332K 0.33 tolerated(0.32) probably_damaging(1) TCGA-DU-6393-01 17 44845704 44845704 G A WNT3 Silent p.D350D 0.05 TCGA-DU-6393-01 17 48669423 48669423 C T CACNA1G Silent p.V960V 0.42 TCGA-DU-6393-01 17 71429886 71429886 T C SDK2 Missense_Mutation p.I433V 0.38 tolerated(0.18) benign(0.074) TCGA-DU-6393-01 19 42796321 42796322 CT - CIC Frame_Shift_Del p.Q992Afs*158 0.58 TCGA-DU-6393-01 1 11177096 11177096 C T MTOR Missense_Mutation p.M2327I 0.74 deleterious(0) probably_damaging(0.954) TCGA-DU-6393-01 1 152085364 152085364 A G TCHH Missense_Mutation p.L110S 0.56 unknown(0) TCGA-DU-6393-01 1 152187067 152187067 A T HRNR Silent p.S2346S 0.06 TCGA-DU-6393-01 1 157766909 157766909 C T FCRL1 Silent p.G400G 0.27 TCGA-DU-6393-01 1 20945095 20945095 C A CDA 3'UTR 0.93 TCGA-DU-6393-01 1 47279151 47279151 C A CYP4B1 Intron 0.80 TCGA-DU-6393-01 1 67266844 67266844 G A INSL5 Missense_Mutation p.R21W 0.34 deleterious(0) probably_damaging(0.912) TCGA-DU-6393-01 1 76387892 76387892 A G ASB17 Missense_Mutation p.I185T 0.75 deleterious(0.01) benign(0.002) TCGA-DU-6393-01 21 46057415 46057415 C T KRTAP10-10 Silent p.C27C 0.38 TCGA-DU-6393-01 22 24567940 24567940 C T CABIN1 Missense_Mutation p.P2006L 0.38 deleterious_low_confidence(0.05) benign(0.424) TCGA-DU-6393-01 2 179614115 179614115 G A TTN Intron 0.48 TCGA-DU-6393-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6393-01 2 233028242 233028242 G A DIS3L2 Missense_Mutation p.V342M 0.27 deleterious(0) probably_damaging(0.994) TCGA-DU-6393-01 3 114069362 114069362 G A ZBTB20 Silent p.P521P 0.38 TCGA-DU-6393-01 3 133119336 133119336 C T BFSP2 Missense_Mutation p.R137W 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6393-01 4 68928226 68928226 G T TMPRSS11F Intron 0.42 TCGA-DU-6393-01 5 131013435 131013435 C T FNIP1 Missense_Mutation p.A494T 0.35 deleterious(0) possibly_damaging(0.784) TCGA-DU-6393-01 5 90000251 90000251 A T GPR98 Missense_Mutation p.I2778F 0.50 possibly_damaging(0.84) TCGA-DU-6393-01 7 103180840 103180840 G A RELN Missense_Mutation p.P2245L 0.57 tolerated(0.12) benign(0.095) TCGA-DU-6393-01 7 130418291 130418291 A G KLF14 Silent p.P190P 0.44 TCGA-DU-6393-01 7 140154990 140154990 G A MKRN1 Missense_Mutation p.P381S 0.06 deleterious(0) possibly_damaging(0.87) TCGA-DU-6393-01 8 119945444 119945444 G A TNFRSF11B Silent p.D42D 0.42 TCGA-DU-6393-01 8 37623846 37623846 C G PROSC Missense_Mutation p.Q98E 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6393-01 9 32630690 32630690 A G TAF1L Silent p.L1630L 0.93 TCGA-DU-6393-01 9 3829411 3829411 C G GLIS3 Missense_Mutation p.S852T 0.97 tolerated(0.12) benign(0.142) TCGA-DU-6393-01 Y 5605958 5605958 C T PCDH11Y Missense_Mutation p.P1333L 0.91 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-DU-6394-01 12 102874213 102874213 A G IGF1 5'UTR 0.44 TCGA-DU-6394-01 12 117669890 117669890 G A NOS1 Silent p.T1128T 0.47 TCGA-DU-6394-01 14 105615619 105615619 G A JAG2 Silent p.N547N 0.37 TCGA-DU-6394-01 14 34263252 34263252 T G NPAS3 Splice_Site p.X434_splice 0.38 TCGA-DU-6394-01 16 67700039 67700039 C T ENKD1 Missense_Mutation p.R72H 0.14 tolerated(0.13) benign(0.004) TCGA-DU-6394-01 16 71692597 71692599 TGT - PHLPP2 In_Frame_Del p.N702del 0.18 TCGA-DU-6394-01 17 29546036 29546037 AG - NF1 Frame_Shift_Del p.Q514Rfs*43 0.33 TCGA-DU-6394-01 17 29553697 29553697 C A NF1 Nonsense_Mutation p.S749* 0.04 TCGA-DU-6394-01 17 29670155 29670155 T A NF1 Splice_Site p.X2397_splice 0.12 TCGA-DU-6394-01 17 73126675 73126675 C A NT5C Missense_Mutation p.V172F 0.40 deleterious(0.04) benign(0.396) TCGA-DU-6394-01 17 78444660 78444660 C T NPTX1 Missense_Mutation p.G418R 0.12 deleterious(0.01) probably_damaging(1) TCGA-DU-6394-01 19 15582755 15582755 C A PGLYRP2 Missense_Mutation p.R430L 0.06 deleterious(0.01) benign(0.38) TCGA-DU-6394-01 19 18650228 18650228 C T FKBP8 Silent p.T168T 0.50 TCGA-DU-6394-01 19 4510914 4510916 TGG - PLIN4 In_Frame_Del p.T1005del 0.49 TCGA-DU-6394-01 19 46387378 46387378 C A IRF2BP1 Missense_Mutation p.C552F 0.78 deleterious(0) probably_damaging(0.962) TCGA-DU-6394-01 19 47217192 47217192 C T PRKD2 Missense_Mutation p.A103T 0.16 tolerated(0.43) benign(0.022) TCGA-DU-6394-01 1 3768869 3768869 G A CEP104 Missense_Mutation p.R35W 0.12 deleterious(0) probably_damaging(0.988) TCGA-DU-6394-01 1 78433848 78433851 CAGT - FUBP1 Splice_Site p.X83_splice 0.71 TCGA-DU-6394-01 20 58381107 58381107 C T PHACTR3 Missense_Mutation p.R396W 0.20 deleterious(0) probably_damaging(0.988) TCGA-DU-6394-01 21 31768834 31768834 G A KRTAP13-1 Missense_Mutation p.V144I 0.47 deleterious(0) benign(0.003) TCGA-DU-6394-01 21 45540355 45540355 G A PWP2 Missense_Mutation p.V439M 0.45 deleterious(0) probably_damaging(0.999) TCGA-DU-6394-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6394-01 3 120357338 120357338 C - HGD Frame_Shift_Del p.V324Lfs*16 0.22 TCGA-DU-6394-01 3 160137299 160137299 T A SMC4 Missense_Mutation p.S609T 0.39 tolerated(0.09) benign(0.006) TCGA-DU-6394-01 4 164247119 164247119 G A NPY1R Silent p.Y196Y 0.49 TCGA-DU-6394-01 4 187084676 187084678 CTT - FAM149A In_Frame_Del p.S312del 0.14 TCGA-DU-6394-01 4 48114404 48114404 A G TXK Silent p.N100N 0.15 TCGA-DU-6394-01 4 85731329 85731331 GAA - WDFY3 In_Frame_Del p.L685del 0.45 TCGA-DU-6394-01 5 109049430 109049433 CTGT - MAN2A1 Frame_Shift_Del p.F118Lfs*19 0.24 TCGA-DU-6394-01 5 67591105 67591107 TAA - PIK3R1 In_Frame_Del p.K567del 0.14 TCGA-DU-6394-01 5 814876 814876 C G ZDHHC11 Missense_Mutation p.G394A 0.44 deleterious_low_confidence(0.03) benign(0.001) TCGA-DU-6394-01 6 114277842 114277844 TCT - HDAC2 In_Frame_Del p.E99del 0.48 TCGA-DU-6394-01 6 128135074 128135074 G A THEMIS Nonsense_Mutation p.R238* 0.43 TCGA-DU-6394-01 6 38690599 38690599 C T DNAH8 5'Flank 0.42 TCGA-DU-6394-01 9 125273992 125273992 C A OR1J2 Silent p.L304L 0.06 TCGA-DU-6394-01 9 139391997 139391998 AG - NOTCH1 Frame_Shift_Del p.L2065Vfs*202 0.42 TCGA-DU-6394-01 9 139395163 139395166 GTCT - NOTCH1 Frame_Shift_Del p.D1925Afs*55 0.29 TCGA-DU-6394-01 X 12701668 12701668 C T FRMPD4 Missense_Mutation p.R179C 0.90 deleterious(0) probably_damaging(1) TCGA-DU-6394-01 X 129147257 129147259 AGA - BCORL1 In_Frame_Del p.K171del 0.35 TCGA-DU-6395-01 11 92085432 92085432 G A FAT3 Missense_Mutation p.V52M 0.12 possibly_damaging(0.896) TCGA-DU-6395-01 12 48370602 48370602 C T COL2A1 Missense_Mutation p.G1143D 0.33 unknown(0) TCGA-DU-6395-01 13 26125550 26125550 C A ATP8A2 Silent p.G322G 0.06 TCGA-DU-6395-01 14 64457244 64457244 C G SYNE2 Missense_Mutation p.T810S 0.19 benign(0.007) TCGA-DU-6395-01 15 33359620 33359620 C T FMN1 Missense_Mutation p.E156K 0.05 deleterious_low_confidence(0.03) unknown(0) TCGA-DU-6395-01 15 55497606 55497606 G T RAB27A 3'UTR 0.21 TCGA-DU-6395-01 15 78893607 78893607 A G CHRNA3 Silent p.N459N 0.23 TCGA-DU-6395-01 16 71483441 71483444 AATT - ZNF23 Frame_Shift_Del p.N162Lfs*11 0.09 TCGA-DU-6395-01 17 7318155 7318155 C T NLGN2 Missense_Mutation p.H278Y 0.20 tolerated(0.27) probably_damaging(0.993) TCGA-DU-6395-01 17 7578502 7578502 A C TP53 Missense_Mutation p.V143G 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6395-01 17 7579362 7579362 A C TP53 Missense_Mutation p.F109V 0.38 deleterious(0) probably_damaging(1) TCGA-DU-6395-01 17 7579363 7579363 A C TP53 Silent p.G108G 0.38 TCGA-DU-6395-01 18 3879577 3879577 G A DLGAP1 Silent p.N164N 0.27 TCGA-DU-6395-01 19 18329192 18329192 G A PDE4C Silent p.A394A 0.37 TCGA-DU-6395-01 1 14143064 14143064 A G PRDM2 Intron 0.17 TCGA-DU-6395-01 1 158227610 158227610 A G CD1A 3'UTR 0.33 TCGA-DU-6395-01 1 228464650 228464650 C T OBSCN Silent p.S2544S 0.24 TCGA-DU-6395-01 1 26448766 26448766 G A PDIK1L Missense_Mutation p.A242T 0.31 deleterious(0) probably_damaging(0.954) TCGA-DU-6395-01 20 60419868 60419868 G A CDH4 Missense_Mutation p.A241T 0.33 deleterious(0.04) benign(0.307) TCGA-DU-6395-01 21 30254531 30254531 T C N6AMT1 Missense_Mutation p.E88G 0.26 benign(0.221) TCGA-DU-6395-01 22 19839287 19839287 G C C22orf29 Missense_Mutation p.D166E 0.04 tolerated(0.17) possibly_damaging(0.701) TCGA-DU-6395-01 22 22782218 22782218 C T IGLV5-37 Silent p.Y72Y 0.34 TCGA-DU-6395-01 2 198338608 198338608 T C COQ10B Missense_Mutation p.I226T 0.44 deleterious(0) probably_damaging(0.996) TCGA-DU-6395-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6395-01 4 141543729 141543729 G A TBC1D9 Missense_Mutation p.R1141W 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.852) TCGA-DU-6395-01 6 146215310 146215310 T C SHPRH Silent p.Q1557Q 0.11 TCGA-DU-6395-01 6 38893890 38893890 T A DNAH8 Silent p.I3457I 0.11 TCGA-DU-6395-01 6 38893891 38893891 A T DNAH8 Missense_Mutation p.I3458F 0.12 probably_damaging(0.987) TCGA-DU-6395-01 7 86542420 86542420 G C KIAA1324L Missense_Mutation p.S611C 0.16 deleterious(0) probably_damaging(0.944) TCGA-DU-6395-01 8 103359284 103359284 T C UBR5 Silent p.G141G 0.46 TCGA-DU-6395-01 8 12952306 12952306 G A DLC1 Missense_Mutation p.T1163M 0.49 deleterious(0) probably_damaging(0.999) TCGA-DU-6395-01 8 30702110 30702110 T C TEX15 Missense_Mutation p.Y1475C 0.48 tolerated(0.06) benign(0.015) TCGA-DU-6395-01 9 104357209 104357209 A C PPP3R2 Missense_Mutation p.S2A 0.32 tolerated_low_confidence(0.42) benign(0) TCGA-DU-6395-01 9 127734030 127734030 C T SCAI Missense_Mutation p.G521D 0.37 tolerated(0.45) benign(0.01) TCGA-DU-6395-01 X 76938777 76938777 T - ATRX Frame_Shift_Del p.R658Vfs*2 0.45 TCGA-DU-6396-01 10 12077528 12077528 G A UPF2 5'UTR 0.23 TCGA-DU-6396-01 10 129906452 129906452 C T MKI67 Missense_Mutation p.A1218T 0.17 tolerated(0.28) possibly_damaging(0.487) TCGA-DU-6396-01 11 4567291 4567291 A T OR52M1 Missense_Mutation p.N291Y 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6396-01 11 72396719 72396719 C G ARAP1 Missense_Mutation p.R1448P 0.28 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-DU-6396-01 12 105151362 105151362 G C CHST11 Missense_Mutation p.E280D 0.38 deleterious(0) probably_damaging(0.951) TCGA-DU-6396-01 12 114793418 114793418 G A TBX5 Silent p.G492G 0.49 TCGA-DU-6396-01 12 122399967 122399967 C T WDR66 Silent p.T797T 0.15 TCGA-DU-6396-01 12 95531311 95531311 A G FGD6 Missense_Mutation p.V994A 0.40 deleterious(0) possibly_damaging(0.861) TCGA-DU-6396-01 13 19751659 19751659 T C TUBA3C Missense_Mutation p.E155G 0.40 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-DU-6396-01 15 52553129 52553129 C T MYO5C Missense_Mutation p.E415K 0.41 tolerated(0.15) benign(0.014) TCGA-DU-6396-01 15 60653219 60653219 C T ANXA2 Missense_Mutation p.G111D 0.06 deleterious(0) probably_damaging(0.961) TCGA-DU-6396-01 15 81598375 81598375 C T IL16 Missense_Mutation p.R1183C 0.14 deleterious(0) probably_damaging(1) TCGA-DU-6396-01 17 27286489 27286489 G A SEZ6 Silent p.A591A 0.24 TCGA-DU-6396-01 17 43101983 43101983 C T DCAKD Missense_Mutation p.A172T 0.31 deleterious(0) probably_damaging(0.993) TCGA-DU-6396-01 17 51900796 51900796 G T KIF2B Missense_Mutation p.R134S 0.41 tolerated(0.62) benign(0.035) TCGA-DU-6396-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.70 deleterious(0) probably_damaging(0.998) TCGA-DU-6396-01 17 79249788 79249788 G A SLC38A10 Missense_Mutation p.T298M 0.31 deleterious(0) probably_damaging(1) TCGA-DU-6396-01 18 77659303 77659303 C G KCNG2 Silent p.L296L 0.23 TCGA-DU-6396-01 19 36041499 36041499 T C ATP4A 3'UTR 0.42 TCGA-DU-6396-01 19 39798915 39798915 G C LRFN1 Silent p.R558R 0.25 TCGA-DU-6396-01 19 41063165 41063165 C T SPTBN4 Silent p.D1842D 0.38 TCGA-DU-6396-01 19 4171094 4171094 C G CREB3L3 Silent p.L299L 0.39 TCGA-DU-6396-01 19 51885677 51885678 - A LIM2 Frame_Shift_Ins p.S149Ffs*59 0.53 TCGA-DU-6396-01 19 7960545 7960545 G T LRRC8E Silent p.V19V 0.06 TCGA-DU-6396-01 1 156905766 156905766 C T ARHGEF11 3'UTR 0.53 TCGA-DU-6396-01 1 21181494 21181494 C T EIF4G3 Missense_Mutation p.G1087D 0.42 deleterious(0) probably_damaging(0.992) TCGA-DU-6396-01 1 237872331 237872331 T C RYR2 Missense_Mutation p.F3359L 0.42 probably_damaging(0.935) TCGA-DU-6396-01 20 23350986 23350986 C T GZF1 Missense_Mutation p.L682F 0.09 tolerated(0.08) benign(0.142) TCGA-DU-6396-01 22 19751681 19751681 C T TBX1 Silent p.Y172Y 0.34 TCGA-DU-6396-01 22 36587386 36587386 G A APOL4 Nonsense_Mutation p.R264* 0.33 TCGA-DU-6396-01 2 133489408 133489408 G C NCKAP5 Missense_Mutation p.P1782R 0.38 tolerated(0.22) benign(0.221) TCGA-DU-6396-01 2 138400162 138400162 T C THSD7B Missense_Mutation p.Y1305H 0.30 deleterious(0.02) unknown(0) TCGA-DU-6396-01 2 170411653 170411653 G A FASTKD1 Missense_Mutation p.L399F 0.47 deleterious(0) probably_damaging(0.999) TCGA-DU-6396-01 2 180634316 180634316 T A ZNF385B Missense_Mutation p.K56I 0.31 deleterious(0) probably_damaging(0.977) TCGA-DU-6396-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6396-01 2 215610535 215610535 C T BARD1 Missense_Mutation p.G574D 0.12 deleterious(0) probably_damaging(0.988) TCGA-DU-6396-01 2 71658529 71658529 G A ZNF638 Missense_Mutation p.G1908D 0.10 tolerated(0.34) benign(0.005) TCGA-DU-6396-01 4 70352368 70352368 T G UGT2B4 Missense_Mutation p.N350T 0.34 deleterious(0.01) probably_damaging(0.954) TCGA-DU-6396-01 5 177649360 177649360 T C PHYKPL Missense_Mutation p.N308S 0.08 tolerated(0.15) possibly_damaging(0.802) TCGA-DU-6396-01 5 72849256 72849256 T C ANKRA2 Silent p.L287L 0.40 TCGA-DU-6396-01 6 25682193 25682193 C G SCGN Missense_Mutation p.D162E 0.30 deleterious(0.01) possibly_damaging(0.857) TCGA-DU-6396-01 6 32975239 32975239 G C HLA-DOA Silent p.V154V 0.34 TCGA-DU-6396-01 6 50683278 50683278 G T TFAP2D Silent p.L163L 0.37 TCGA-DU-6396-01 7 100679845 100679845 C A MUC17 Missense_Mutation p.D1716E 0.43 probably_damaging(0.986) TCGA-DU-6396-01 7 142162187 142162187 G A TRBV6-6 Missense_Mutation p.R30C 0.35 tolerated(0.19) benign(0.008) TCGA-DU-6396-01 8 144663399 144663399 C T EEF1D Missense_Mutation p.V463M 0.16 deleterious(0.01) benign(0.372) TCGA-DU-6396-01 X 19027859 19027859 A T GPR64 Missense_Mutation p.F436Y 0.48 deleterious(0.02) possibly_damaging(0.811) TCGA-DU-6396-01 X 23801978 23801978 G A SAT1 Silent p.P60P 0.41 TCGA-DU-6396-01 X 24735546 24735546 G C POLA1 Missense_Mutation p.E276D 0.38 tolerated(0.51) benign(0.001) TCGA-DU-6396-01 X 54955789 54955789 G A TRO Missense_Mutation p.V878I 0.40 deleterious(0.01) benign(0.076) TCGA-DU-6396-01 X 62974337 62974337 C T ARHGEF9 5'UTR 0.62 TCGA-DU-6396-01 X 63488373 63488373 G A MTMR8 3'UTR 0.27 TCGA-DU-6396-01 X 76909629 76909629 G A ATRX Nonsense_Mutation p.R1426* 0.34 TCGA-DU-6397-01 10 70141155 70141155 T C RUFY2 Missense_Mutation p.D349G 0.39 deleterious(0.01) possibly_damaging(0.877) TCGA-DU-6397-01 12 108961130 108961130 G A ISCU Intron 0.14 TCGA-DU-6397-01 12 53187894 53187896 CTT - KRT3 Splice_Site p.X289_splice 0.10 TCGA-DU-6397-01 12 6675419 6675419 C A NOP2 Missense_Mutation p.A108S 0.07 tolerated(0.13) possibly_damaging(0.818) TCGA-DU-6397-01 12 76740750 76740752 CTT - BBS10 In_Frame_Del p.E338del 0.11 TCGA-DU-6397-01 14 20248557 20248557 G T OR4M1 Missense_Mutation p.V26F 0.09 tolerated(0.97) benign(0.001) TCGA-DU-6397-01 14 66136042 66136042 G A FUT8 Missense_Mutation p.V227M 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6397-01 14 94528925 94528925 G A DDX24 Missense_Mutation p.A254V 0.22 tolerated(0.08) benign(0.179) TCGA-DU-6397-01 15 91030731 91030731 A G IQGAP1 Missense_Mutation p.K1389E 0.25 deleterious(0) probably_damaging(0.991) TCGA-DU-6397-01 16 71065678 71065678 C A HYDIN Missense_Mutation p.S891I 0.18 benign(0.025) TCGA-DU-6397-01 17 29663350 29663350 G C NF1 Splice_Site p.X2003_splice 0.07 TCGA-DU-6397-01 17 48703623 48703623 A G CACNA1G Silent p.L2215L 0.33 TCGA-DU-6397-01 17 71166516 71166516 C G SSTR2 Missense_Mutation p.T353S 0.16 tolerated(0.65) benign(0.007) TCGA-DU-6397-01 17 80402421 80402423 CTC - C17orf62 In_Frame_Del p.E115del 0.09 TCGA-DU-6397-01 18 21474271 21474271 A T LAMA3 Missense_Mutation p.N1807I 0.08 benign(0.089) TCGA-DU-6397-01 18 23632625 23632626 AT - SS18 Frame_Shift_Del p.Y190Wfs*49 0.17 TCGA-DU-6397-01 19 14938560 14938560 C T OR7A5 Missense_Mutation p.R165Q 0.30 tolerated_low_confidence(0.45) benign(0.037) TCGA-DU-6397-01 19 6833209 6833209 C T VAV1 Missense_Mutation p.P508L 0.36 deleterious(0) probably_damaging(0.954) TCGA-DU-6397-01 1 118496618 118496618 C G SPAG17 3'UTR 0.59 TCGA-DU-6397-01 1 152282972 152282972 C G FLG Missense_Mutation p.G1464R 0.07 probably_damaging(0.953) TCGA-DU-6397-01 1 165389141 165389141 T A RXRG Missense_Mutation p.K136N 0.06 deleterious(0) probably_damaging(0.977) TCGA-DU-6397-01 1 178820268 178820268 T G ANGPTL1 Missense_Mutation p.D491A 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.624) TCGA-DU-6397-01 1 78444677 78444678 AT - FUBP1 Frame_Shift_Del p.Y4Ffs*24 0.59 TCGA-DU-6397-01 21 46020984 46020984 C T KRTAP10-7 Missense_Mutation p.P155S 0.27 tolerated(0.45) unknown(0) TCGA-DU-6397-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6397-01 3 108475916 108475916 G T RETNLB Silent p.L39L 0.17 TCGA-DU-6397-01 3 69230517 69230518 TT - FRMD4B Frame_Shift_Del p.K795Efs*21 0.15 TCGA-DU-6397-01 3 73024258 73024258 G - GXYLT2 Frame_Shift_Del p.A428Lfs*26 0.09 TCGA-DU-6397-01 3 97806608 97806608 G A OR5AC2 Missense_Mutation p.A198T 0.44 tolerated(0.39) benign(0.053) TCGA-DU-6397-01 4 113352721 113352721 C A ALPK1 Missense_Mutation p.P673H 0.26 tolerated(0.06) benign(0.336) TCGA-DU-6397-01 4 162577517 162577517 T C FSTL5 Missense_Mutation p.N286S 0.35 tolerated(0.08) benign(0.003) TCGA-DU-6397-01 4 162577525 162577525 T A FSTL5 Missense_Mutation p.K283N 0.33 deleterious(0) possibly_damaging(0.551) TCGA-DU-6397-01 4 55573431 55573431 T A KIT Missense_Mutation p.S365T 0.30 tolerated(0.92) benign(0) TCGA-DU-6397-01 5 112439958 112439958 G T MCC Silent p.S374S 0.21 TCGA-DU-6397-01 5 158697549 158697549 C A UBLCP1 Missense_Mutation p.L116M 0.10 tolerated(0.1) benign(0.087) TCGA-DU-6397-01 6 29556084 29556084 C T OR2H2 Silent p.Y121Y 0.05 TCGA-DU-6397-01 6 47682356 47682356 A G GPR115 Missense_Mutation p.I459V 0.06 tolerated(1) benign(0.007) TCGA-DU-6397-01 6 7229828 7229828 C T RREB1 Missense_Mutation p.A499V 0.15 tolerated(0.07) possibly_damaging(0.766) TCGA-DU-6397-01 7 147914572 147914572 G C CNTNAP2 Missense_Mutation p.S1068T 0.05 deleterious(0.03) possibly_damaging(0.549) TCGA-DU-6397-01 8 124368657 124368657 G A ATAD2 Missense_Mutation p.R540W 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6397-01 8 99101783 99101784 - A C8orf47 Frame_Shift_Ins p.T181Nfs*12 0.19 TCGA-DU-6399-01 10 111647887 111647887 T C XPNPEP1 Missense_Mutation p.E191G 0.18 tolerated(0.06) benign(0.001) TCGA-DU-6399-01 10 37508692 37508692 C A ANKRD30A Missense_Mutation p.T1295K 0.27 deleterious(0.03) possibly_damaging(0.788) TCGA-DU-6399-01 10 45799644 45799644 G C OR13A1 Missense_Mutation p.P76R 0.22 deleterious(0.01) possibly_damaging(0.73) TCGA-DU-6399-01 10 79785906 79785906 G A POLR3A Silent p.Y42Y 0.05 TCGA-DU-6399-01 11 56468711 56468711 T G OR9G1 Missense_Mutation p.M283R 0.12 deleterious(0) probably_damaging(0.91) TCGA-DU-6399-01 11 56511045 56511045 C G OR9G4 Silent p.L81L 0.14 TCGA-DU-6399-01 11 64137197 64137197 C T RPS6KA4 Silent p.P543P 0.12 TCGA-DU-6399-01 11 65265801 65265801 C T MALAT1 RNA 0.50 TCGA-DU-6399-01 11 7061017 7061017 G A NLRP14 Splice_Site p.X121_splice 0.04 TCGA-DU-6399-01 11 74680630 74680630 T C SPCS2 Missense_Mutation p.I127T 0.25 deleterious(0) benign(0.424) TCGA-DU-6399-01 11 87883114 87883114 C A RAB38 Missense_Mutation p.R71I 0.06 deleterious(0) probably_damaging(0.995) TCGA-DU-6399-01 12 1599409 1599409 G A ERC1 3'UTR 0.21 TCGA-DU-6399-01 12 85677644 85677644 C T ALX1 Missense_Mutation p.A174V 0.18 deleterious(0) possibly_damaging(0.896) TCGA-DU-6399-01 13 38153417 38153417 A G POSTN Silent p.G580G 0.25 TCGA-DU-6399-01 14 64735545 64735545 C T ESR2 Missense_Mutation p.R207Q 0.12 deleterious(0) benign(0.316) TCGA-DU-6399-01 14 92268712 92268712 G T TC2N Missense_Mutation p.Q119K 0.17 tolerated(0.07) benign(0.097) TCGA-DU-6399-01 16 14973982 14973982 G C NOMO1 Silent p.G956G 0.11 TCGA-DU-6399-01 16 24802267 24802267 T C TNRC6A Silent p.D768D 0.23 TCGA-DU-6399-01 16 3065807 3065807 C T CLDN6 Silent p.A72A 0.41 TCGA-DU-6399-01 16 3583021 3583021 C G CLUAP1 Intron 0.44 TCGA-DU-6399-01 16 4927426 4927426 G A UBN1 Silent p.A1102A 0.05 TCGA-DU-6399-01 16 56396203 56396203 G A AMFR 3'UTR 0.30 TCGA-DU-6399-01 16 89348536 89348536 C T ANKRD11 Missense_Mutation p.E1472K 0.22 probably_damaging(0.994) TCGA-DU-6399-01 17 11827172 11827172 A G DNAH9 Missense_Mutation p.N3931D 0.16 possibly_damaging(0.872) TCGA-DU-6399-01 17 19720091 19720091 A C ULK2 Missense_Mutation p.V356G 0.46 deleterious(0) possibly_damaging(0.811) TCGA-DU-6399-01 17 7577081 7577099 TCCTCTGTGCGCCGGTCTC - TP53 Frame_Shift_Del p.R280Kfs*59 0.23 TCGA-DU-6399-01 17 7578554 7578554 A C TP53 Missense_Mutation p.Y126D 0.35 deleterious(0) probably_damaging(1) TCGA-DU-6399-01 17 7662866 7662866 C T DNAH2 Missense_Mutation p.P859S 0.42 possibly_damaging(0.889) TCGA-DU-6399-01 18 13645353 13645353 G A LDLRAD4 Silent p.R206R 0.09 TCGA-DU-6399-01 18 61465877 61465877 C A SERPINB7 Nonsense_Mutation p.S165* 0.06 TCGA-DU-6399-01 19 11796444 11796444 A G ZNF833P RNA 0.40 TCGA-DU-6399-01 19 1495534 1495534 C T REEP6 Silent p.Y92Y 0.07 TCGA-DU-6399-01 19 6678249 6678249 G T C3 Silent p.I1588I 0.17 TCGA-DU-6399-01 19 9070400 9070400 G A MUC16 Silent p.P5682P 0.40 TCGA-DU-6399-01 1 107973470 107973470 T C NTNG1 Missense_Mutation p.C396R 0.08 deleterious(0) probably_damaging(0.927) TCGA-DU-6399-01 1 165183011 165183011 T C LMX1A Missense_Mutation p.H179R 0.48 tolerated(0.4) benign(0.001) TCGA-DU-6399-01 1 185951454 185951454 C T HMCN1 Missense_Mutation p.T908I 0.24 probably_damaging(0.998) TCGA-DU-6399-01 1 40758165 40758165 G A ZMPSTE24 Missense_Mutation p.A418T 0.16 deleterious(0) probably_damaging(1) TCGA-DU-6399-01 1 46474027 46474027 A G MAST2 Missense_Mutation p.K321R 0.17 tolerated_low_confidence(0.08) possibly_damaging(0.678) TCGA-DU-6399-01 1 74507115 74507115 T C LRRIQ3 Silent p.R500R 0.04 TCGA-DU-6399-01 20 54956513 54956513 C A AURKA Missense_Mutation p.K227N 0.16 deleterious(0.02) possibly_damaging(0.664) TCGA-DU-6399-01 21 10908895 10908895 T C TPTE Missense_Mutation p.N484D 0.10 tolerated(0.74) benign(0.006) TCGA-DU-6399-01 21 34625023 34625023 G A IFNAR2 Silent p.K199K 0.49 TCGA-DU-6399-01 21 45746603 45746603 G A PFKL Missense_Mutation p.R734H 0.24 deleterious(0) possibly_damaging(0.811) TCGA-DU-6399-01 21 46086744 46086744 G A KRTAP12-2 Silent p.C20C 0.52 TCGA-DU-6399-01 22 22869695 22869695 G A ZNF280A Missense_Mutation p.S87L 0.19 tolerated(1) benign(0.002) TCGA-DU-6399-01 2 138320879 138320879 T A THSD7B Missense_Mutation p.L1079Q 0.11 tolerated(0.6) unknown(0) TCGA-DU-6399-01 2 167298214 167298214 T C SCN7A Missense_Mutation p.M617V 0.30 tolerated(0.06) benign(0.015) TCGA-DU-6399-01 2 189867065 189867065 C T COL3A1 Silent p.F811F 0.09 TCGA-DU-6399-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6399-01 2 233899633 233899633 C A NEU2 Missense_Mutation p.L337I 0.12 deleterious(0.01) possibly_damaging(0.722) TCGA-DU-6399-01 3 12458613 12458613 C T PPARG Silent p.S410S 0.11 TCGA-DU-6399-01 3 18390577 18390577 A G SATB1 3'UTR 0.33 TCGA-DU-6399-01 3 195800987 195800987 A G TFRC Missense_Mutation p.I83T 0.19 tolerated(0.08) benign(0.21) TCGA-DU-6399-01 4 22436987 22436987 C T GPR125 Missense_Mutation p.A464T 0.18 tolerated(0.14) probably_damaging(0.982) TCGA-DU-6399-01 6 116381413 116381413 G A FRK Missense_Mutation p.T21M 0.09 tolerated(0.1) benign(0.002) TCGA-DU-6399-01 6 160679569 160679569 G A SLC22A2 Missense_Mutation p.T74M 0.12 deleterious(0.01) probably_damaging(1) TCGA-DU-6399-01 6 26376853 26376853 G A BTN3A2 3'UTR 0.16 TCGA-DU-6399-01 6 29713481 29713481 G T Y_RNA 5'Flank 0.11 TCGA-DU-6399-01 6 36290199 36290199 G A C6orf222 Missense_Mutation p.R498W 0.12 deleterious(0.02) benign(0.14) TCGA-DU-6399-01 6 44116117 44116117 C T TMEM63B Silent p.T372T 0.06 TCGA-DU-6399-01 6 55147128 55147128 G - HCRTR2 Frame_Shift_Del p.K405Sfs*3 0.26 TCGA-DU-6399-01 6 76124523 76124523 T C FILIP1 Missense_Mutation p.K56E 0.43 tolerated(0.5) benign(0.043) TCGA-DU-6399-01 6 87966561 87966561 G C ZNF292 Missense_Mutation p.A1072P 0.07 deleterious(0.05) benign(0.002) TCGA-DU-6399-01 7 5270498 5270498 G A WIPI2 Missense_Mutation p.A429T 0.23 tolerated(0.18) benign(0.004) TCGA-DU-6399-01 7 6624735 6624735 C T ZDHHC4 Silent p.L195L 0.06 TCGA-DU-6399-01 8 55541622 55541622 A G RP1 Missense_Mutation p.D1727G 0.07 tolerated(0.41) benign(0.01) TCGA-DU-6399-01 8 71646325 71646325 A G XKR9 Missense_Mutation p.Y263C 0.24 deleterious(0) probably_damaging(0.999) TCGA-DU-6399-01 X 102586722 102586722 A G TCEAL7 3'UTR 0.41 TCGA-DU-6399-01 X 12734397 12734397 A - FRMPD4 Frame_Shift_Del p.N607Tfs*4 0.08 TCGA-DU-6399-01 X 138678852 138678852 T C MCF2 Silent p.T787T 0.39 TCGA-DU-6399-01 X 32380909 32380909 C T DMD Missense_Mutation p.G1774E 0.37 probably_damaging(0.969) TCGA-DU-6399-01 X 48978974 48978974 G A GPKOW Missense_Mutation p.A110V 0.15 deleterious(0) benign(0.034) TCGA-DU-6399-01 X 76939864 76939864 T - ATRX Frame_Shift_Del p.K295Rfs*4 0.44 TCGA-DU-6400-01 10 134259250 134259250 C T C10orf91 Missense_Mutation p.T27M 0.42 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-DU-6400-01 10 24669943 24669943 G A KIAA1217 Missense_Mutation p.R167H 0.22 deleterious(0) probably_damaging(0.999) TCGA-DU-6400-01 10 29820187 29820187 G A SVIL Silent p.V680V 0.24 TCGA-DU-6400-01 11 113639586 113639586 A G ZW10 Missense_Mutation p.I70T 0.18 deleterious(0) possibly_damaging(0.756) TCGA-DU-6400-01 11 67433865 67433865 G A ALDH3B2 Silent p.C53C 0.27 TCGA-DU-6400-01 12 124408866 124408866 G A DNAH10 Missense_Mutation p.A3767T 0.42 benign(0.005) TCGA-DU-6400-01 12 64020270 64020270 G C DPY19L2 Missense_Mutation p.C280W 0.33 deleterious(0) possibly_damaging(0.566) TCGA-DU-6400-01 12 82828486 82828486 G A METTL25 Missense_Mutation p.V463I 0.33 tolerated(0.08) possibly_damaging(0.505) TCGA-DU-6400-01 14 21238446 21238446 G C EDDM3B Missense_Mutation p.R46T 0.22 tolerated(0.13) benign(0) TCGA-DU-6400-01 16 2279638 2279638 C T E4F1 Missense_Mutation p.S126F 0.28 deleterious(0) possibly_damaging(0.498) TCGA-DU-6400-01 16 55730216 55730216 C T SLC6A2 Silent p.F409F 0.08 TCGA-DU-6400-01 16 58292428 58292428 G A CCDC113 Splice_Site p.X182_splice 0.38 TCGA-DU-6400-01 17 10404045 10404045 C T MYH1 Missense_Mutation p.A1255T 0.21 tolerated(1) benign(0.001) TCGA-DU-6400-01 17 48051291 48051291 C T DLX4 Missense_Mutation p.S236L 0.48 tolerated(0.44) benign(0) TCGA-DU-6400-01 17 67080415 67080415 G C ABCA6 Missense_Mutation p.Q1448E 0.05 deleterious(0.01) possibly_damaging(0.507) TCGA-DU-6400-01 18 10677809 10677809 A G PIEZO2 Silent p.N2559N 0.09 TCGA-DU-6400-01 19 42791721 42791721 C T CIC Missense_Mutation p.P203S 0.31 probably_damaging(1) TCGA-DU-6400-01 19 42793381 42793381 T - CIC Frame_Shift_Del p.Y395Mfs*40 0.38 TCGA-DU-6400-01 19 4511137 4511137 G A PLIN4 Silent p.T931T 0.18 TCGA-DU-6400-01 19 8808420 8808420 C T ACTL9 Missense_Mutation p.G211D 0.55 deleterious(0.03) probably_damaging(1) TCGA-DU-6400-01 1 16578016 16578016 C A FBXO42 Missense_Mutation p.G435C 0.67 deleterious(0.04) possibly_damaging(0.466) TCGA-DU-6400-01 1 90048483 90048483 C T LRRC8B Nonsense_Mutation p.R92* 0.87 TCGA-DU-6400-01 2 170460747 170460747 G A PPIG Missense_Mutation p.E38K 0.24 tolerated(0.15) possibly_damaging(0.731) TCGA-DU-6400-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6400-01 2 21230714 21230714 A T APOB Missense_Mutation p.L3009Q 0.19 probably_damaging(0.998) TCGA-DU-6400-01 2 219258872 219258872 G A SLC11A1 Silent p.T448T 0.15 TCGA-DU-6400-01 2 222290662 222290662 C T EPHA4 3'UTR 0.20 TCGA-DU-6400-01 3 105495351 105495351 T A CBLB Missense_Mutation p.H152L 0.13 deleterious(0) probably_damaging(0.999) TCGA-DU-6400-01 3 160952983 160952983 G A NMD3 Missense_Mutation p.R187H 0.47 deleterious(0.03) benign(0.028) TCGA-DU-6400-01 3 180327531 180327531 A G TTC14 Missense_Mutation p.H505R 0.23 tolerated(1) unknown(0) TCGA-DU-6400-01 3 41953050 41953050 C T ULK4 Missense_Mutation p.G333D 0.09 tolerated(0.3) benign(0.017) TCGA-DU-6400-01 3 42754752 42754752 C T CCDC13 Missense_Mutation p.R592Q 0.20 tolerated(0.23) probably_damaging(0.977) TCGA-DU-6400-01 4 88534157 88534157 T C DSPP Silent p.S273S 0.44 TCGA-DU-6400-01 5 1409936 1409936 C T SLC6A3 Missense_Mutation p.G433E 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6400-01 5 169026067 169026067 C T SPDL1 Missense_Mutation p.L410F 0.08 deleterious(0) probably_damaging(0.964) TCGA-DU-6400-01 5 177547253 177547253 G A N4BP3 Silent p.A135A 0.48 TCGA-DU-6400-01 5 41004891 41004891 G A MROH2B Silent p.S1332S 0.13 TCGA-DU-6400-01 6 46830657 46830657 C T GPR116 Missense_Mutation p.A723T 0.24 tolerated(0.11) benign(0.347) TCGA-DU-6400-01 6 87967233 87967233 C - ZNF292 Frame_Shift_Del p.H1296Ifs*15 0.37 TCGA-DU-6400-01 7 123302491 123302491 G A LMOD2 Missense_Mutation p.G284E 0.07 deleterious(0) probably_damaging(1) TCGA-DU-6400-01 7 151711757 151711757 T A GALNTL5 Missense_Mutation p.I352K 0.42 deleterious(0) possibly_damaging(0.828) TCGA-DU-6400-01 7 44102503 44102503 G C PGAM2 Missense_Mutation p.L208V 0.15 tolerated(0.14) probably_damaging(0.914) TCGA-DU-6400-01 8 145694030 145694030 G A KIFC2 Missense_Mutation p.A334T 0.21 tolerated(0.08) probably_damaging(0.998) TCGA-DU-6400-01 8 38681524 38681524 A G TACC1 Intron 0.30 TCGA-DU-6400-01 9 122075489 122075489 G A BRINP1 Missense_Mutation p.H49Y 0.12 tolerated(0.05) probably_damaging(0.932) TCGA-DU-6400-01 9 126319963 126319963 C T DENND1A Silent p.L293L 0.16 TCGA-DU-6400-01 9 139412252 139412252 C T NOTCH1 Missense_Mutation p.A465T 0.10 deleterious(0) probably_damaging(0.957) TCGA-DU-6400-01 X 106046201 106046201 G - TBC1D8B Frame_Shift_Del p.L42Sfs*19 0.34 TCGA-DU-6400-01 X 109696415 109696415 G A RGAG1 Missense_Mutation p.G857E 0.41 tolerated(0.45) possibly_damaging(0.726) TCGA-DU-6400-01 X 135405538 135405538 G A GPR112 Silent p.R224R 0.08 TCGA-DU-6400-01 X 2407265 2407265 T A ZBED1 Missense_Mutation p.E499V 0.49 deleterious(0.01) benign(0.263) TCGA-DU-6400-01 X 27998600 27998600 C A DCAF8L1 Missense_Mutation p.K284N 0.20 deleterious(0.02) benign(0.004) TCGA-DU-6400-01 X 48542340 48542340 A G WAS Missense_Mutation p.Q33R 0.12 deleterious(0) possibly_damaging(0.632) TCGA-DU-6400-01 X 51075880 51075880 G A NUDT10 Silent p.A21A 0.55 TCGA-DU-6400-01 X 54777700 54777700 T C ITIH6 Missense_Mutation p.T1156A 0.48 tolerated(0.23) benign(0.253) TCGA-DU-6400-01 X 64721755 64721755 C T ZC3H12B Missense_Mutation p.R393C 0.30 deleterious(0) probably_damaging(0.999) TCGA-DU-6401-01 12 124101060 124101060 G T DDX55 Missense_Mutation p.G320V 0.07 deleterious(0) probably_damaging(0.999) TCGA-DU-6401-01 12 21329781 21329781 T C SLCO1B1 Missense_Mutation p.I144T 0.48 tolerated(0.5) benign(0.008) TCGA-DU-6401-01 14 102508452 102508452 A G DYNC1H1 Missense_Mutation p.I4069V 0.40 benign(0.047) TCGA-DU-6401-01 14 68251787 68251787 C T ZFYVE26 Missense_Mutation p.S1171N 0.40 tolerated(0.88) benign(0.007) TCGA-DU-6401-01 16 28137080 28137080 G A XPO6 Missense_Mutation p.R566C 0.20 deleterious(0) probably_damaging(0.984) TCGA-DU-6401-01 17 10350460 10350460 C T MYH4 Missense_Mutation p.R1680H 0.06 deleterious(0.03) probably_damaging(0.977) TCGA-DU-6401-01 17 21217496 21217496 C T MAP2K3 Missense_Mutation p.T333M 0.17 tolerated(0.06) possibly_damaging(0.775) TCGA-DU-6401-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.70 tolerated(0.09) benign(0.344) TCGA-DU-6401-01 17 76116777 76116777 C T TMC6 Missense_Mutation p.V558I 0.21 tolerated(1) benign(0.006) TCGA-DU-6401-01 19 40196519 40196519 G A LGALS14 5'UTR 0.56 TCGA-DU-6401-01 19 42224879 42224879 G A CEACAM5 Silent p.S603S 0.40 TCGA-DU-6401-01 1 26772898 26772898 G A DHDDS Missense_Mutation p.V139I 0.34 tolerated(0.17) benign(0.015) TCGA-DU-6401-01 1 3809463 3809463 G A C1orf174 Missense_Mutation p.A38V 0.09 tolerated(0.09) benign(0.2) TCGA-DU-6401-01 22 46929726 46929726 G C CELSR1 Missense_Mutation p.N1114K 0.45 deleterious(0) possibly_damaging(0.864) TCGA-DU-6401-01 2 209113113 209113113 G T IDH1 Missense_Mutation p.R132S 0.35 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DU-6401-01 4 20490510 20490510 G A SLIT2 Missense_Mutation p.R227K 0.17 tolerated(0.05) benign(0.214) TCGA-DU-6401-01 6 129419503 129419503 T C LAMA2 Silent p.D194D 0.11 TCGA-DU-6401-01 6 138199814 138199814 G A TNFAIP3 Missense_Mutation p.R411Q 0.07 tolerated(0.2) benign(0.007) TCGA-DU-6401-01 6 42690067 42690067 C T PRPH2 Silent p.A2A 0.06 TCGA-DU-6401-01 7 99026819 99026819 G A ATP5J2-PTCD1 Silent p.I323I 0.10 TCGA-DU-6401-01 8 120596283 120596283 A G ENPP2 Silent p.P510P 0.52 TCGA-DU-6401-01 8 27634263 27634266 TAAG - ESCO2 Frame_Shift_Del p.K147Ifs*23 0.46 TCGA-DU-6401-01 9 138657002 138657002 G T KCNT1 Missense_Mutation p.M387I 0.10 deleterious(0.03) possibly_damaging(0.459) TCGA-DU-6401-01 9 140136180 140136180 A G TUBB4B Missense_Mutation p.E22G 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.879) TCGA-DU-6401-01 9 84531597 84531597 T C SPATA31D5P RNA 0.26 TCGA-DU-6401-01 X 120182836 120182836 G A GLUD2 Missense_Mutation p.G433E 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6401-01 X 140995655 140995655 C T MAGEC1 Missense_Mutation p.S822L 0.04 tolerated_low_confidence(0.36) unknown(0) TCGA-DU-6401-01 X 19983583 19983583 G T CXorf23 Missense_Mutation p.R285S 0.53 tolerated(0.25) benign(0.168) TCGA-DU-6401-01 X 48682452 48682452 A G HDAC6 Missense_Mutation p.N1142D 0.09 deleterious(0) probably_damaging(1) TCGA-DU-6401-01 X 76939673 76939674 - T ATRX Frame_Shift_Ins p.L359Tfs*3 0.36 TCGA-DU-6401-01 X 78010568 78010568 A G LPAR4 Missense_Mutation p.M68V 0.16 deleterious(0.01) benign(0.139) TCGA-DU-6402-01 10 89692835 89692835 G T PTEN Missense_Mutation p.D107Y 0.33 deleterious(0) probably_damaging(0.979) TCGA-DU-6402-01 11 108381685 108381685 G T EXPH5 Missense_Mutation p.L1517I 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-DU-6402-01 11 108382533 108382533 G C EXPH5 Missense_Mutation p.T1234R 0.20 deleterious(0.02) possibly_damaging(0.606) TCGA-DU-6402-01 11 130079750 130079750 G A ST14 3'UTR 0.34 TCGA-DU-6402-01 11 55653034 55653034 C T TRIM51 Nonsense_Mutation p.Q44* 0.22 TCGA-DU-6402-01 11 60107365 60107365 T A MS4A6E Silent p.S127S 0.28 TCGA-DU-6402-01 12 10124176 10124176 A G CLEC12A Missense_Mutation p.D4G 0.37 deleterious_low_confidence(0) unknown(0) TCGA-DU-6402-01 12 130648631 130648631 G A FZD10 Missense_Mutation p.G382R 0.30 deleterious(0) probably_damaging(1) TCGA-DU-6402-01 12 66152273 66152273 T G RPSAP52 RNA 0.31 TCGA-DU-6402-01 14 106307534 106307534 C T IGHD Missense_Mutation p.G169S 0.23 tolerated(1) benign(0.011) TCGA-DU-6402-01 14 47120403 47120403 G A RPL10L Silent p.D179D 0.25 TCGA-DU-6402-01 15 73615765 73615765 G A HCN4 Missense_Mutation p.P890L 0.38 tolerated_low_confidence(0.2) unknown(0) TCGA-DU-6402-01 15 73615766 73615766 G A HCN4 Missense_Mutation p.P890S 0.43 tolerated_low_confidence(0.63) unknown(0) TCGA-DU-6402-01 15 90167424 90167424 C A TICRR Missense_Mutation p.P1295T 0.32 tolerated(0.14) benign(0.131) TCGA-DU-6402-01 16 20476848 20476848 C T ACSM2A Nonsense_Mutation p.R63* 0.20 TCGA-DU-6402-01 17 18053797 18053797 G A MYO15A Missense_Mutation p.G2423S 0.19 unknown(0) TCGA-DU-6402-01 17 29548901 29548901 G - NF1 Frame_Shift_Del p.D559Ifs*9 0.27 TCGA-DU-6402-01 17 29663747 29663747 T G NF1 Nonsense_Mutation p.L2081* 0.29 TCGA-DU-6402-01 17 71410870 71410870 G A SDK2 Silent p.H799H 0.37 TCGA-DU-6402-01 18 14763803 14763803 G A ANKRD30B Silent p.T313T 0.38 TCGA-DU-6402-01 18 56008358 56008358 A G NEDD4L Missense_Mutation p.N405S 0.36 deleterious(0) possibly_damaging(0.834) TCGA-DU-6402-01 19 59068093 59068093 T C UBE2M Missense_Mutation p.N103S 0.34 deleterious(0) probably_damaging(1) TCGA-DU-6402-01 19 6590911 6590911 C T CD70 Missense_Mutation p.V35M 0.34 tolerated(0.23) benign(0.072) TCGA-DU-6402-01 1 12034759 12034759 G T PLOD1 Missense_Mutation p.R693M 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-DU-6402-01 1 12941802 12941802 C T PRAMEF4 Missense_Mutation p.V250I 0.30 tolerated(0.37) benign(0.005) TCGA-DU-6402-01 1 152082385 152082385 C T TCHH Missense_Mutation p.R1103H 0.30 unknown(0) TCGA-DU-6402-01 1 158324220 158324220 C T CD1E Missense_Mutation p.R38C 0.24 deleterious(0.04) benign(0.277) TCGA-DU-6402-01 1 237777663 237777663 A T RYR2 Missense_Mutation p.K1745N 0.34 benign(0.029) TCGA-DU-6402-01 20 54824776 54824776 G A MC3R Missense_Mutation p.V293I 0.04 tolerated(0.61) benign(0.096) TCGA-DU-6402-01 20 58349322 58349322 G A PHACTR3 Silent p.G317G 0.29 TCGA-DU-6402-01 21 45877263 45877263 G A LRRC3 Missense_Mutation p.A246T 0.27 tolerated(1) benign(0.003) TCGA-DU-6402-01 22 31302407 31302408 - TC OSBP2 3'UTR 0.35 TCGA-DU-6402-01 22 32013006 32013006 G C SFI1 Missense_Mutation p.E1152Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-6402-01 22 32302244 32302244 C T DEPDC5 Missense_Mutation p.R1516W 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6402-01 2 10929977 10929977 G A PDIA6 Silent p.G246G 0.26 TCGA-DU-6402-01 2 165578649 165578649 G T COBLL1 Missense_Mutation p.A311E 0.26 tolerated(0.06) benign(0.024) TCGA-DU-6402-01 2 18113581 18113581 C A KCNS3 Missense_Mutation p.P436T 0.33 tolerated(0.75) possibly_damaging(0.719) TCGA-DU-6402-01 2 228890206 228890206 G A SPHKAP Silent p.I115I 0.05 TCGA-DU-6402-01 2 232263412 232263412 G A B3GNT7 Missense_Mutation p.V328I 0.31 deleterious(0) probably_damaging(0.999) TCGA-DU-6402-01 2 233681681 233681681 G A GIGYF2 Missense_Mutation p.R791Q 0.38 unknown(0) TCGA-DU-6402-01 2 55404777 55404777 C G CLHC1 Missense_Mutation p.G509R 0.27 deleterious(0) probably_damaging(0.946) TCGA-DU-6402-01 3 183774718 183774718 C T HTR3C Nonsense_Mutation p.R149* 0.27 TCGA-DU-6402-01 3 184075764 184075764 G A CLCN2 Missense_Mutation p.P201S 0.06 deleterious(0) probably_damaging(1) TCGA-DU-6402-01 3 41265550 41265550 A G CTNNB1 5'UTR 0.31 TCGA-DU-6402-01 4 126239159 126239159 C T FAT4 Silent p.L531L 0.32 TCGA-DU-6402-01 4 15991422 15991422 A G PROM1 Missense_Mutation p.L670P 0.45 deleterious(0) probably_damaging(0.998) TCGA-DU-6402-01 4 26483467 26483467 G A CCKAR Silent p.Y360Y 0.18 TCGA-DU-6402-01 4 69434170 69434170 C T UGT2B17 Silent p.L11L 0.13 TCGA-DU-6402-01 4 76812812 76812812 C T PPEF2 Missense_Mutation p.S77N 0.31 tolerated(0.16) benign(0.025) TCGA-DU-6402-01 5 140176070 140176070 C T PCDHA2 Silent p.Y507Y 0.23 TCGA-DU-6402-01 5 140475880 140475880 C T PCDHB2 Silent p.L502L 0.12 TCGA-DU-6402-01 5 16067657 16067657 T C MARCH11 Missense_Mutation p.N378D 0.27 tolerated(0.07) benign(0.004) TCGA-DU-6402-01 6 39693152 39693152 C G KIF6 5'UTR 0.25 TCGA-DU-6402-01 6 51882309 51882309 C T PKHD1 Silent p.S1833S 0.19 TCGA-DU-6402-01 7 107423751 107423751 C T SLC26A3 Missense_Mutation p.V340I 0.20 tolerated(1) benign(0.006) TCGA-DU-6402-01 7 140453154 140453154 T C BRAF Missense_Mutation p.D594G 0.20 deleterious(0) possibly_damaging(0.846) TCGA-DU-6402-01 7 41729539 41729539 G T INHBA Missense_Mutation p.F330L 0.21 deleterious(0) probably_damaging(1) TCGA-DU-6402-01 7 50611629 50611629 G A DDC Missense_Mutation p.T52M 0.20 deleterious(0.03) benign(0.124) TCGA-DU-6402-01 7 86415593 86415593 G A GRM3 Missense_Mutation p.R162Q 0.22 deleterious(0) probably_damaging(1) TCGA-DU-6402-01 9 15506556 15506556 T G PSIP1 Intron 0.14 TCGA-DU-6402-01 9 90301560 90301560 G A DAPK1 Missense_Mutation p.M773I 0.50 tolerated(0.34) benign(0.001) TCGA-DU-6402-01 X 105449891 105449891 G A MUM1L1 Missense_Mutation p.A156T 0.68 deleterious(0.04) benign(0.05) TCGA-DU-6403-01 10 105793848 105793848 A G COL17A1 Silent p.Y1337Y 0.44 TCGA-DU-6403-01 11 124624651 124624651 G A ESAM Missense_Mutation p.R206C 0.33 deleterious(0) possibly_damaging(0.893) TCGA-DU-6403-01 11 130079588 130079588 A G ST14 Missense_Mutation p.E813G 0.10 tolerated(0.07) probably_damaging(0.991) TCGA-DU-6403-01 11 56409492 56409492 C T OR5AP2 Missense_Mutation p.V142M 0.24 tolerated(1) benign(0.003) TCGA-DU-6403-01 11 65149450 65149450 C A SLC25A45 Intron 0.24 TCGA-DU-6403-01 11 82571020 82571020 G A PRCP Missense_Mutation p.T124M 0.21 deleterious(0.02) probably_damaging(0.992) TCGA-DU-6403-01 13 61103049 61103049 A G TDRD3 Missense_Mutation p.I564V 0.09 tolerated(0.31) benign(0.039) TCGA-DU-6403-01 14 55619340 55619340 G T DLGAP5 Missense_Mutation p.P697T 0.18 tolerated(0.11) benign(0.002) TCGA-DU-6403-01 15 22835954 22835954 A G TUBGCP5 Missense_Mutation p.E62G 0.37 deleterious(0.05) benign(0.06) TCGA-DU-6403-01 15 45401122 45401122 G A DUOX2 Silent p.S421S 0.22 TCGA-DU-6403-01 15 45411278 45411278 C T DUOXA1 Intron 0.37 TCGA-DU-6403-01 15 97328356 97328356 T A SPATA8 3'UTR 0.27 TCGA-DU-6403-01 16 15839063 15839063 C T MYH11 Missense_Mutation p.A822T 0.35 probably_damaging(0.998) TCGA-DU-6403-01 16 32890843 32890843 C T SLC6A10P RNA 0.15 TCGA-DU-6403-01 17 12620681 12620681 C T MYOCD Missense_Mutation p.R66C 0.29 deleterious(0) possibly_damaging(0.81) TCGA-DU-6403-01 17 34249493 34249493 T C RDM1 Intron 0.07 TCGA-DU-6403-01 17 7130442 7130442 C T DVL2 Missense_Mutation p.V504I 0.34 tolerated(0.45) benign(0.042) TCGA-DU-6403-01 18 57103121 57103121 G A CCBE1 3'UTR 0.29 TCGA-DU-6403-01 19 15770103 15770103 G A CYP4F3 Missense_Mutation p.V491I 0.31 tolerated(0.29) benign(0.027) TCGA-DU-6403-01 19 1785228 1785228 G A ATP8B3 Silent p.Y1154Y 0.38 TCGA-DU-6403-01 19 18174773 18174773 G A IL12RB1 Missense_Mutation p.R511W 0.41 deleterious(0.02) possibly_damaging(0.664) TCGA-DU-6403-01 1 118558706 118558706 A C SPAG17 Missense_Mutation p.I1390R 0.33 tolerated(0.19) benign(0.056) TCGA-DU-6403-01 1 152192866 152192866 G A HRNR Silent p.R413R 0.23 TCGA-DU-6403-01 1 152279767 152279767 G A FLG Missense_Mutation p.S2532L 0.31 benign(0.388) TCGA-DU-6403-01 1 158687191 158687191 T G OR6K3 Missense_Mutation p.T239P 0.44 deleterious(0) probably_damaging(0.983) TCGA-DU-6403-01 1 161168155 161168156 - AG ADAMTS4 Frame_Shift_Ins p.F88Sfs*8 0.38 TCGA-DU-6403-01 1 176863937 176863937 G A ASTN1 Missense_Mutation p.R901W 0.36 tolerated(0.17) possibly_damaging(0.809) TCGA-DU-6403-01 1 234041399 234041399 G A SLC35F3 Missense_Mutation p.V60M 0.39 tolerated_low_confidence(0.09) benign(0.123) TCGA-DU-6403-01 1 236647200 236647200 G T EDARADD 3'Flank 0.31 TCGA-DU-6403-01 1 237167625 237167625 G A MT1HL1 Silent p.A16A 0.30 TCGA-DU-6403-01 1 85546977 85546977 G T WDR63 Missense_Mutation p.R55L 0.38 deleterious(0.02) possibly_damaging(0.769) TCGA-DU-6403-01 20 13765689 13765689 G A NDUFAF5 5'UTR 0.38 TCGA-DU-6403-01 21 47549030 47549030 G A COL6A2 Intron 0.33 TCGA-DU-6403-01 22 37387528 37387528 C - TEX33 Frame_Shift_Del p.D247Ifs*11 0.27 TCGA-DU-6403-01 22 43870690 43870690 G A MPPED1 Missense_Mutation p.D161N 0.28 tolerated(0.15) benign(0.328) TCGA-DU-6403-01 2 135744115 135744115 A T MAP3K19 Missense_Mutation p.F776Y 0.04 tolerated(0.42) possibly_damaging(0.548) TCGA-DU-6403-01 2 178936632 178936632 G A PDE11A Missense_Mutation p.S178L 0.36 deleterious(0.04) possibly_damaging(0.602) TCGA-DU-6403-01 2 238277603 238277603 G A COL6A3 Silent p.D1501D 0.41 TCGA-DU-6403-01 2 242814228 242814228 C T CXXC11 Missense_Mutation p.T174M 0.50 tolerated(0.2) possibly_damaging(0.725) TCGA-DU-6403-01 2 27278054 27278054 C T AGBL5 Missense_Mutation p.R281C 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6403-01 2 30457270 30457270 G T LBH Splice_Site p.X9_splice 0.33 TCGA-DU-6403-01 2 54123990 54123990 T - PSME4 Frame_Shift_Del p.K1213Nfs*3 0.24 TCGA-DU-6403-01 3 164730794 164730794 T C SI Missense_Mutation p.T1346A 0.25 deleterious(0.02) benign(0.156) TCGA-DU-6403-01 3 196654715 196654715 G A SENP5 Missense_Mutation p.E691K 0.50 deleterious(0.02) probably_damaging(0.996) TCGA-DU-6403-01 3 77614192 77614192 C T ROBO2 Silent p.I606I 0.25 TCGA-DU-6403-01 4 119064828 119064828 G A NDST3 Missense_Mutation p.V510I 0.31 tolerated(0.18) benign(0.001) TCGA-DU-6403-01 4 119216148 119216148 C T PRSS12 Missense_Mutation p.G662E 0.38 deleterious(0) probably_damaging(0.997) TCGA-DU-6403-01 4 38830190 38830190 G A TLR6 Missense_Mutation p.T302M 0.31 deleterious(0) probably_damaging(0.943) TCGA-DU-6403-01 4 90743488 90743488 G A SNCA Missense_Mutation p.T72M 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-DU-6403-01 4 9557805 9557805 C T MIR548I2 RNA 0.32 TCGA-DU-6403-01 5 130766884 130766884 C T RAPGEF6 Missense_Mutation p.S1386N 0.25 tolerated_low_confidence(0.3) benign(0.002) TCGA-DU-6403-01 5 140476039 140476039 C T PCDHB2 Silent p.D555D 0.18 TCGA-DU-6403-01 5 140769049 140769049 G A PCDHGB4 Missense_Mutation p.R533H 0.55 tolerated(0.07) possibly_damaging(0.509) TCGA-DU-6403-01 5 153174271 153174271 C T GRIA1 Silent p.C797C 0.26 TCGA-DU-6403-01 5 156589604 156589604 C T FAM71B Missense_Mutation p.V558I 0.29 tolerated(0.07) benign(0.007) TCGA-DU-6403-01 6 51889804 51889804 T G PKHD1 Missense_Mutation p.N1602H 0.29 deleterious(0.02) probably_damaging(0.98) TCGA-DU-6403-01 7 142563850 142563850 G T EPHB6 Missense_Mutation p.R413L 0.50 tolerated(0.25) benign(0.055) TCGA-DU-6403-01 7 143747664 143747664 C A OR2A5 Missense_Mutation p.P57H 0.35 deleterious(0) probably_damaging(0.967) TCGA-DU-6403-01 7 144096876 144096876 G A NOBOX Silent p.A376A 0.14 TCGA-DU-6403-01 7 150921894 150921894 C T ABCF2 Missense_Mutation p.R112H 0.24 tolerated(0.06) probably_damaging(0.951) TCGA-DU-6403-01 7 29535576 29535576 G A CHN2 Silent p.T221T 0.37 TCGA-DU-6403-01 7 43581598 43581598 G C HECW1 Splice_Site p.X1416_splice 0.16 TCGA-DU-6403-01 7 70597851 70597851 C T WBSCR17 Silent p.F21F 0.13 TCGA-DU-6403-01 7 81339500 81339500 G A HGF Nonsense_Mutation p.R502* 0.17 TCGA-DU-6403-01 7 82785657 82785657 C T PCLO Silent p.P100P 0.28 TCGA-DU-6403-01 8 102585973 102585973 A G GRHL2 Missense_Mutation p.N271S 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-6403-01 8 144895145 144895145 G C SCRIB Intron 0.25 TCGA-DU-6403-01 9 135798758 135798758 G A TSC1 Missense_Mutation p.S162L 0.31 deleterious(0) possibly_damaging(0.876) TCGA-DU-6403-01 X 103349186 103349186 C A SLC25A53 Missense_Mutation p.W252L 0.34 tolerated(1) benign(0.171) TCGA-DU-6403-01 X 132351926 132351926 G A TFDP3 Missense_Mutation p.T121M 0.30 deleterious(0.01) benign(0.001) TCGA-DU-6403-01 X 148069037 148069037 G T AFF2 Missense_Mutation p.R1255L 0.30 deleterious(0.01) possibly_damaging(0.84) TCGA-DU-6403-01 X 153133300 153133300 G A L1CAM Missense_Mutation p.R632C 0.28 deleterious(0.01) possibly_damaging(0.832) TCGA-DU-6403-01 X 18912471 18912471 G C PHKA2 Missense_Mutation p.R1130G 0.33 deleterious(0.01) benign(0.118) TCGA-DU-6403-01 X 37660587 37660587 G C CYBB Missense_Mutation p.V295L 0.36 tolerated(0.07) possibly_damaging(0.819) TCGA-DU-6403-01 X 39933842 39933842 C T BCOR Missense_Mutation p.V253I 0.22 tolerated(0.23) benign(0.089) TCGA-DU-6403-01 X 39933843 39933843 G T BCOR Nonsense_Mutation p.Y252* 0.22 TCGA-DU-6403-01 X 99662058 99662058 C A PCDH19 Missense_Mutation p.G513V 0.37 deleterious(0) probably_damaging(1) TCGA-DU-6404-01 14 25043508 25043508 G A CTSG Silent p.Y179Y 0.47 TCGA-DU-6404-01 17 73282427 73282427 G A SLC25A19 Silent p.H82H 0.33 TCGA-DU-6404-01 19 52250087 52250087 C T FPR1 Missense_Mutation p.R54Q 0.43 tolerated(0.11) possibly_damaging(0.499) TCGA-DU-6404-01 1 114123223 114123223 G A MAGI3 Missense_Mutation p.V165I 0.20 tolerated(0.06) benign(0.38) TCGA-DU-6404-01 2 153473700 153473700 C T FMNL2 Silent p.V436V 0.39 TCGA-DU-6404-01 3 124053129 124053129 A C KALRN Missense_Mutation p.K476N 0.34 tolerated(0.07) probably_damaging(0.96) TCGA-DU-6404-01 4 8396382 8396382 G A ACOX3 Nonsense_Mutation p.R382* 0.62 TCGA-DU-6404-01 4 88901213 88901213 C T SPP1 Missense_Mutation p.P37S 0.28 tolerated(0.14) possibly_damaging(0.876) TCGA-DU-6404-01 6 106764059 106764059 G A ATG5 Nonsense_Mutation p.R9* 0.37 TCGA-DU-6404-01 7 142224222 142224222 C A TRBV11-1 Missense_Mutation p.A16S 0.38 tolerated(0.07) benign(0.126) TCGA-DU-6404-01 X 117043975 117043975 C T KLHL13 Missense_Mutation p.V222I 0.15 tolerated(1) benign(0.003) TCGA-DU-6404-01 X 153761826 153761826 C T G6PD Missense_Mutation p.A307T 0.10 tolerated(0.13) benign(0.013) TCGA-DU-6404-01 X 54953051 54953051 C T TRO Missense_Mutation p.R565C 0.40 tolerated(0.15) unknown(0) TCGA-DU-6404-01 X 69652187 69652187 C A GDPD2 Missense_Mutation p.N497K 0.08 deleterious(0) probably_damaging(0.964) TCGA-DU-6405-01 11 102984404 102984404 G A DYNC2H1 Missense_Mutation p.V112I 0.36 benign(0.042) TCGA-DU-6405-01 11 119059739 119059739 G A PDZD3 Missense_Mutation p.R438Q 0.41 tolerated(0.28) benign(0.044) TCGA-DU-6405-01 11 44948236 44948236 G C TSPAN18 Silent p.T209T 0.39 TCGA-DU-6405-01 11 5291062 5291062 T C HBE1 Missense_Mutation p.N20S 0.45 deleterious(0.04) benign(0.135) TCGA-DU-6405-01 11 55563460 55563461 - G OR5D14 Frame_Shift_Ins p.A144Gfs*31 0.33 TCGA-DU-6405-01 11 72945405 72945405 G A P2RY2 Silent p.A67A 0.31 TCGA-DU-6405-01 12 111908030 111908030 A G ATXN2 Silent p.Y1066Y 0.37 TCGA-DU-6405-01 12 53722415 53722415 C T SP7 Missense_Mutation p.D271N 0.48 deleterious(0.02) benign(0.149) TCGA-DU-6405-01 13 114780784 114780784 G A RASA3 Missense_Mutation p.R436C 0.10 deleterious(0) possibly_damaging(0.906) TCGA-DU-6405-01 14 105420969 105420969 C T AHNAK2 Silent p.P273P 0.53 TCGA-DU-6405-01 14 62547859 62547859 G A SYT16 Missense_Mutation p.R434H 0.42 deleterious(0) probably_damaging(0.997) TCGA-DU-6405-01 14 62567163 62567163 G A SYT16 Missense_Mutation p.R559H 0.43 deleterious(0.02) benign(0.159) TCGA-DU-6405-01 16 3781317 3781317 C G CREBBP Missense_Mutation p.R1683P 0.65 unknown(0) TCGA-DU-6405-01 17 16527452 16527452 C A ZNF624 Nonsense_Mutation p.E250* 0.47 TCGA-DU-6405-01 17 39122910 39122910 G A KRT39 Missense_Mutation p.R67C 0.42 tolerated(0.19) benign(0) TCGA-DU-6405-01 17 40362418 40362418 C T STAT5B Intron 0.51 TCGA-DU-6405-01 17 43922344 43922344 C T SPPL2C Silent p.Y24Y 0.44 TCGA-DU-6405-01 19 10465220 10465220 G A TYK2 Missense_Mutation p.R895C 0.25 deleterious(0) probably_damaging(1) TCGA-DU-6405-01 19 40480518 40480518 C T PSMC4 Missense_Mutation p.T186M 0.11 deleterious(0) possibly_damaging(0.908) TCGA-DU-6405-01 19 46216180 46216180 G A FBXO46 Nonsense_Mutation p.R192* 0.44 TCGA-DU-6405-01 19 51466622 51466622 C T KLK6 Silent p.L127L 0.32 TCGA-DU-6405-01 19 58384159 58384159 C T ZNF814 3'UTR 0.34 TCGA-DU-6405-01 1 161967984 161967984 C T OLFML2B Missense_Mutation p.A369T 0.41 tolerated(0.82) benign(0) TCGA-DU-6405-01 1 20216922 20216923 - A OTUD3 Frame_Shift_Ins p.R90Tfs*22 0.40 TCGA-DU-6405-01 1 24387556 24387556 C T MYOM3 Missense_Mutation p.E1330K 0.26 deleterious(0) possibly_damaging(0.649) TCGA-DU-6405-01 20 61594706 61594706 G A SLC17A9 Missense_Mutation p.R237Q 0.35 tolerated(0.08) benign(0.013) TCGA-DU-6405-01 21 10920147 10920147 A T TPTE Missense_Mutation p.F369L 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-DU-6405-01 2 112945155 112945155 C T FBLN7 3'UTR 0.44 TCGA-DU-6405-01 2 182396426 182396426 A G ITGA4 Missense_Mutation p.N903D 0.40 tolerated(0.12) benign(0.231) TCGA-DU-6405-01 2 198353171 198353174 TCTG - HSPD1 Frame_Shift_Del p.D419Efs*35 0.46 TCGA-DU-6405-01 2 233674460 233674460 C T GIGYF2 Nonsense_Mutation p.Q634* 0.24 TCGA-DU-6405-01 2 239344637 239344637 C A ASB1 Silent p.I159I 0.43 TCGA-DU-6405-01 2 38297759 38297759 C T CYP1B1 3'UTR 0.40 TCGA-DU-6405-01 3 124692589 124692589 C A HEG1 Missense_Mutation p.D1328Y 0.36 deleterious(0) probably_damaging(1) TCGA-DU-6405-01 3 14862336 14862336 G A FGD5 Silent p.S586S 0.42 TCGA-DU-6405-01 3 164741401 164741401 C T SI Missense_Mutation p.R1019H 0.31 tolerated(0.08) benign(0.022) TCGA-DU-6405-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.27 tolerated(0.05) possibly_damaging(0.704) TCGA-DU-6405-01 3 49049692 49049692 G A WDR6 Missense_Mutation p.R272Q 0.41 tolerated(0.43) benign(0.198) TCGA-DU-6405-01 4 141888953 141888953 T C RNF150 Missense_Mutation p.I187V 0.17 tolerated(0.26) benign(0.002) TCGA-DU-6405-01 4 154335914 154335914 G A MND1 Missense_Mutation p.A175T 0.35 tolerated(0.23) benign(0.291) TCGA-DU-6405-01 4 189068521 189068521 G A TRIML1 Missense_Mutation p.V468I 0.48 tolerated_low_confidence(0.24) benign(0.001) TCGA-DU-6405-01 5 145252495 145252495 C T GRXCR2 Missense_Mutation p.D13N 0.38 deleterious(0) possibly_damaging(0.714) TCGA-DU-6405-01 5 155771587 155771587 G A SGCD Missense_Mutation p.R31Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-DU-6405-01 5 31323148 31323148 G T CDH6 Silent p.R702R 0.36 TCGA-DU-6405-01 5 45267295 45267295 C T HCN1 Missense_Mutation p.R560H 0.37 deleterious(0) probably_damaging(0.996) TCGA-DU-6405-01 5 5237184 5237184 G A ADAMTS16 Missense_Mutation p.R709H 0.42 tolerated(0.35) benign(0.006) TCGA-DU-6405-01 5 53751847 53751847 C T HSPB3 Silent p.D76D 0.34 TCGA-DU-6405-01 6 137245387 137245387 G T SLC35D3 Silent p.T268T 0.86 TCGA-DU-6405-01 6 137245388 137245388 G T SLC35D3 Missense_Mutation p.V269L 0.86 deleterious(0.01) possibly_damaging(0.492) TCGA-DU-6405-01 6 46996743 46996743 C T GPR110 Missense_Mutation p.G19S 0.42 tolerated(0.48) benign(0.003) TCGA-DU-6405-01 6 47754301 47754301 C T OPN5 Nonsense_Mutation p.R61* 0.55 TCGA-DU-6405-01 7 77569563 77569564 TC - PHTF2 Frame_Shift_Del p.L529Cfs*16 0.20 TCGA-DU-6405-01 7 87178715 87178715 C T ABCB1 Silent p.T558T 0.35 TCGA-DU-6405-01 8 104898359 104898359 C T RIMS2 Missense_Mutation p.S511L 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DU-6405-01 8 25216578 25216578 G A DOCK5 Splice_Site p.X983_splice 0.43 TCGA-DU-6405-01 9 104086328 104086328 G A LPPR1 Missense_Mutation p.E323K 0.36 tolerated(0.09) benign(0.107) TCGA-DU-6405-01 9 115648895 115648895 T G SLC46A2 Silent p.G405G 0.33 TCGA-DU-6405-01 9 12708029 12708029 A G TYRP1 Missense_Mutation p.I432V 0.94 deleterious(0.02) probably_damaging(0.995) TCGA-DU-6405-01 9 95610417 95610417 T C ZNF484 Missense_Mutation p.T220A 0.24 tolerated(0.09) benign(0.049) TCGA-DU-6405-01 X 101395679 101395679 G T TCEAL6 3'UTR 0.50 TCGA-DU-6405-01 X 103043374 103043374 C T PLP1 Missense_Mutation p.P211S 0.42 deleterious(0.04) probably_damaging(1) TCGA-DU-6405-01 X 108719025 108719025 C A GUCY2F Missense_Mutation p.Q47H 0.39 tolerated(0.57) benign(0.172) TCGA-DU-6405-01 X 151870194 151870194 G A MAGEA6 Missense_Mutation p.G295E 0.42 deleterious(0.05) benign(0.347) TCGA-DU-6405-01 X 18259468 18259469 TT - SCML2 Frame_Shift_Del p.K669Efs*2 0.31 TCGA-DU-6406-01 12 81112720 81112720 C T MYF5 Missense_Mutation p.P220S 0.16 tolerated(0.45) benign(0.001) TCGA-DU-6406-01 1 115524063 115524063 G A SYCP1 Missense_Mutation p.G830D 0.05 tolerated(0.15) possibly_damaging(0.747) TCGA-DU-6406-01 1 176132079 176132079 G A RFWD2 Nonsense_Mutation p.Q230* 0.10 TCGA-DU-6406-01 21 42779931 42779931 G A MX2 Missense_Mutation p.R640H 0.14 deleterious(0.01) probably_damaging(1) TCGA-DU-6406-01 22 30858119 30858119 C A SEC14L3 Missense_Mutation p.G242V 0.08 deleterious(0) probably_damaging(1) TCGA-DU-6407-01 10 100185433 100185433 A C HPS1 Missense_Mutation p.D400E 0.38 tolerated(0.24) benign(0.23) TCGA-DU-6407-01 10 12803041 12803041 G A CAMK1D Missense_Mutation p.V132M 0.35 deleterious(0) probably_damaging(0.993) TCGA-DU-6407-01 10 26359114 26359114 T C MYO3A Silent p.Y415Y 0.05 TCGA-DU-6407-01 10 8100437 8100437 G A GATA3 Silent p.S137S 0.45 TCGA-DU-6407-01 11 66294278 66294278 G A BBS1 Missense_Mutation p.A447T 0.05 tolerated(0.27) benign(0.05) TCGA-DU-6407-01 12 54635636 54635636 C T CBX5 Missense_Mutation p.C160Y 0.38 deleterious(0.03) probably_damaging(0.995) TCGA-DU-6407-01 13 24444199 24444199 C T MIPEP Missense_Mutation p.D247N 0.48 tolerated(0.6) benign(0.003) TCGA-DU-6407-01 15 74178445 74178445 C T TBC1D21 Silent p.G202G 0.07 TCGA-DU-6407-01 16 71610262 71610262 G A TAT Silent p.D19D 0.08 TCGA-DU-6407-01 16 85010046 85010046 C T ZDHHC7 Missense_Mutation p.G314E 0.42 tolerated(0.06) probably_damaging(0.978) TCGA-DU-6407-01 17 35640173 35640173 T C ACACA Missense_Mutation p.N202S 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6407-01 17 36059196 36059196 G A HNF1B Silent p.Y513Y 0.15 TCGA-DU-6407-01 17 65105677 65105677 A G HELZ Silent p.A1348A 0.51 TCGA-DU-6407-01 17 7579362 7579362 A C TP53 Missense_Mutation p.F109V 0.89 deleterious(0) probably_damaging(1) TCGA-DU-6407-01 19 19040099 19040099 G A HOMER3 3'UTR 0.35 TCGA-DU-6407-01 19 35616158 35616158 G A LGI4 Missense_Mutation p.A518V 0.07 tolerated(0.06) benign(0.208) TCGA-DU-6407-01 1 22174482 22174482 G A HSPG2 Silent p.I2614I 0.13 TCGA-DU-6407-01 1 74670899 74670899 C A FPGT Missense_Mutation p.P390T 0.14 tolerated(0.07) benign(0.243) TCGA-DU-6407-01 21 17246819 17246819 T C USP25 Missense_Mutation p.S925P 0.16 deleterious(0.01) possibly_damaging(0.773) TCGA-DU-6407-01 2 166872165 166872165 C T SCN1A Missense_Mutation p.V1168I 0.38 tolerated(0.22) benign(0.018) TCGA-DU-6407-01 2 173423525 173423525 C G PDK1 Missense_Mutation p.L96V 0.42 deleterious(0.01) probably_damaging(0.922) TCGA-DU-6407-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6407-01 2 69002506 69002506 C T ARHGAP25 Missense_Mutation p.A72V 0.04 deleterious(0) benign(0.225) TCGA-DU-6407-01 2 72359586 72359586 C T CYP26B1 Missense_Mutation p.G437S 0.51 deleterious(0) probably_damaging(1) TCGA-DU-6407-01 3 134079238 134079238 T G AMOTL2 Silent p.P531P 0.29 TCGA-DU-6407-01 3 179322413 179322413 G A MRPL47 5'UTR 0.44 TCGA-DU-6407-01 3 8590439 8590439 C T LMCD1 Silent p.S191S 0.32 TCGA-DU-6407-01 5 16475174 16475174 C T FAM134B Silent p.T390T 0.42 TCGA-DU-6407-01 6 160501242 160501242 C T IGF2R Missense_Mutation p.A1923V 0.47 tolerated(0.25) benign(0.016) TCGA-DU-6407-01 X 100667035 100667035 G T HNRNPH2 Missense_Mutation p.W20L 0.05 deleterious(0) possibly_damaging(0.819) TCGA-DU-6407-01 X 30578233 30578233 T C CXorf21 Silent p.R80R 0.03 TCGA-DU-6407-01 X 36091355 36091355 C A CHDC2 Missense_Mutation p.S97Y 0.32 tolerated(1) benign(0.442) TCGA-DU-6407-01 X 76939340 76939343 CTAC - ATRX Frame_Shift_Del p.V469Ifs*44 0.36 TCGA-DU-6408-01 10 135183409 135183409 G A ECHS1 Missense_Mutation p.A138V 0.06 deleterious(0) probably_damaging(0.997) TCGA-DU-6408-01 11 298552 298552 C T IFITM5 Silent p.K116K 0.30 TCGA-DU-6408-01 12 10961751 10961751 C G TAS2R9 Missense_Mutation p.K308N 0.23 tolerated(0.62) benign(0.003) TCGA-DU-6408-01 13 33638070 33638070 G A KL Missense_Mutation p.R929H 0.15 tolerated(0.15) benign(0.011) TCGA-DU-6408-01 14 33165315 33165315 A C AKAP6 Missense_Mutation p.K1000T 0.07 deleterious(0) probably_damaging(0.998) TCGA-DU-6408-01 16 81819709 81819709 G A PLCG2 Missense_Mutation p.E39K 0.28 deleterious(0) possibly_damaging(0.783) TCGA-DU-6408-01 17 18219589 18219589 G A SMCR8 Silent p.Q162Q 0.05 TCGA-DU-6408-01 17 20135590 20135590 G A SPECC1 Silent p.E741E 0.45 TCGA-DU-6408-01 17 44068858 44068858 G A MAPT Silent p.P471P 0.05 TCGA-DU-6408-01 17 47122357 47122357 C T IGF2BP1 Missense_Mutation p.A442V 0.30 tolerated(0.05) possibly_damaging(0.759) TCGA-DU-6408-01 17 62131617 62131617 A G ERN1 Missense_Mutation p.L649P 0.24 deleterious(0) probably_damaging(1) TCGA-DU-6408-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.42 deleterious(0) probably_damaging(0.998) TCGA-DU-6408-01 17 7577518 7577518 T A TP53 Missense_Mutation p.I255F 0.47 deleterious(0) probably_damaging(0.993) TCGA-DU-6408-01 19 14568915 14568915 A T PKN1 Missense_Mutation p.N419I 0.07 deleterious(0) benign(0.056) TCGA-DU-6408-01 19 53911501 53911501 G A ZNF765 Silent p.R231R 0.10 TCGA-DU-6408-01 1 115401333 115401333 G A SYCP1 Splice_Site p.X152_splice 0.26 TCGA-DU-6408-01 1 156639260 156639263 CTCC - NES Frame_Shift_Del p.G1573Tfs*14 0.43 TCGA-DU-6408-01 21 11098763 11098763 C A BAGE2 RNA 0.29 TCGA-DU-6408-01 22 37627415 37627415 G A RAC2 Missense_Mutation p.R102W 0.53 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-DU-6408-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6408-01 2 73315196 73315196 T C RAB11FIP5 Missense_Mutation p.D517G 0.38 deleterious(0.01) benign(0.004) TCGA-DU-6408-01 3 114057857 114057857 C T ZBTB20 Missense_Mutation p.G741R 0.43 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DU-6408-01 3 150877703 150877703 G T MED12L Missense_Mutation p.D308Y 0.05 deleterious(0.01) probably_damaging(0.992) TCGA-DU-6408-01 3 195516420 195516420 C T MUC4 Silent p.S677S 0.46 TCGA-DU-6408-01 4 121957900 121957900 A T NDNF Missense_Mutation p.L409H 0.37 deleterious(0) possibly_damaging(0.882) TCGA-DU-6408-01 5 13735963 13735963 C T DNAH5 Missense_Mutation p.R3845H 0.04 possibly_damaging(0.522) TCGA-DU-6408-01 5 140746018 140746018 C T PCDHGA5 Silent p.F707F 0.52 TCGA-DU-6408-01 5 73072373 73072373 G A ARHGEF28 Missense_Mutation p.R231Q 0.51 tolerated(0.35) benign(0.029) TCGA-DU-6408-01 6 100868697 100868697 T C SIM1 Missense_Mutation p.K379R 0.09 deleterious(0.05) benign(0.113) TCGA-DU-6408-01 8 92406210 92406210 G C SLC26A7 Missense_Mutation p.E626D 0.07 tolerated(0.5) benign(0.023) TCGA-DU-6408-01 9 36170748 36170748 G A CCIN Missense_Mutation p.A417T 0.08 tolerated(0.13) benign(0.185) TCGA-DU-6408-01 X 76874371 76874371 A C ATRX Missense_Mutation p.I1784S 0.36 probably_damaging(1) TCGA-DU-6408-01 X 76874433 76874433 A C ATRX Missense_Mutation p.N1763K 0.29 probably_damaging(0.99) TCGA-DU-6410-01 10 23287189 23287189 C A ARMC3 Missense_Mutation p.P430T 0.44 tolerated(0.53) benign(0.24) TCGA-DU-6410-01 10 26802585 26802585 C T APBB1IP Missense_Mutation p.P270L 0.42 deleterious(0) probably_damaging(0.999) TCGA-DU-6410-01 10 71136763 71136763 G A HK1 Missense_Mutation p.G321S 0.46 deleterious(0.03) benign(0.052) TCGA-DU-6410-01 11 22271916 22271916 A T ANO5 Missense_Mutation p.S338C 0.37 deleterious(0) probably_damaging(0.984) TCGA-DU-6410-01 11 26584807 26584807 T C MUC15 Missense_Mutation p.R261G 0.10 deleterious(0.01) possibly_damaging(0.765) TCGA-DU-6410-01 11 63667348 63667348 A G MARK2 Silent p.A178A 0.48 TCGA-DU-6410-01 11 65303494 65303494 C T SCYL1 Missense_Mutation p.A486V 0.36 deleterious(0) probably_damaging(0.995) TCGA-DU-6410-01 12 70980859 70980859 G A PTPRB Nonsense_Mutation p.R747* 0.50 TCGA-DU-6410-01 14 106791017 106791017 A G IGHV3-30 Silent p.Y113Y 0.12 TCGA-DU-6410-01 14 20586367 20586367 C T OR4K17 Missense_Mutation p.R268C 0.48 deleterious(0.01) possibly_damaging(0.781) TCGA-DU-6410-01 16 89807295 89807297 TTA - ZNF276 3'Flank 0.58 TCGA-DU-6410-01 16 9000424 9000424 C T USP7 Silent p.E429E 0.50 TCGA-DU-6410-01 17 10350515 10350515 C A MYH4 Missense_Mutation p.D1662Y 0.37 deleterious(0) probably_damaging(0.992) TCGA-DU-6410-01 17 38906790 38906790 C T KRT25 Silent p.A339A 0.42 TCGA-DU-6410-01 17 49371388 49371388 G A UTP18 Missense_Mutation p.G543D 0.44 deleterious(0) probably_damaging(1) TCGA-DU-6410-01 17 78320934 78320934 G A RNF213 Silent p.A2933A 0.56 TCGA-DU-6410-01 17 80196898 80196898 G A SLC16A3 3'UTR 0.43 TCGA-DU-6410-01 18 8793017 8793017 C T SOGA2 Missense_Mutation p.P637S 0.47 tolerated(0.82) possibly_damaging(0.882) TCGA-DU-6410-01 19 57133636 57133636 G A ZNF71 Silent p.V327V 0.41 TCGA-DU-6410-01 1 10182079 10182079 G A UBE4B Missense_Mutation p.G500D 0.14 tolerated(0.15) benign(0.109) TCGA-DU-6410-01 1 153745465 153745465 C T INTS3 Missense_Mutation p.R987W 0.37 deleterious(0.01) probably_damaging(0.93) TCGA-DU-6410-01 1 154842348 154842348 C T KCNN3 Silent p.Q31Q 0.33 TCGA-DU-6410-01 1 240371098 240371098 G A FMN2 Missense_Mutation p.G996S 0.06 unknown(0) TCGA-DU-6410-01 1 26361731 26361731 T C EXTL1 Missense_Mutation p.F642L 0.87 tolerated(0.09) benign(0.133) TCGA-DU-6410-01 1 27101342 27101342 G T ARID1A Nonsense_Mutation p.E1542* 0.88 TCGA-DU-6410-01 1 43824985 43824985 G A CDC20 Silent p.K33K 0.10 TCGA-DU-6410-01 20 25201921 25201921 G C ENTPD6 Missense_Mutation p.E333Q 0.05 tolerated(0.06) benign(0.113) TCGA-DU-6410-01 20 50768799 50768799 C T ZFP64 Silent p.A644A 0.43 TCGA-DU-6410-01 21 47952057 47952057 G T DIP2A Silent p.P404P 0.37 TCGA-DU-6410-01 22 23029703 23029703 C T IGLV3-25 Missense_Mutation p.A102V 0.45 deleterious(0.01) probably_damaging(0.983) TCGA-DU-6410-01 22 38890947 38890947 T C DDX17 Missense_Mutation p.R329G 0.37 deleterious(0) probably_damaging(0.952) TCGA-DU-6410-01 2 109539871 109539871 C T EDAR Missense_Mutation p.G132D 0.40 tolerated(0.17) probably_damaging(0.999) TCGA-DU-6410-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6410-01 3 10291133 10291135 CTT - TATDN2 In_Frame_Del p.F84del 0.18 TCGA-DU-6410-01 3 108074123 108074123 T C HHLA2 Missense_Mutation p.S194P 0.13 tolerated(0.14) probably_damaging(0.942) TCGA-DU-6410-01 3 195515511 195515511 G A MUC4 Silent p.T980T 0.29 TCGA-DU-6410-01 3 89498454 89498454 G T EPHA3 Missense_Mutation p.S809I 0.44 deleterious(0) probably_damaging(0.979) TCGA-DU-6410-01 4 26422326 26422326 C T RBPJ Nonsense_Mutation p.Q172* 0.89 TCGA-DU-6410-01 4 74280861 74280861 C T ALB Missense_Mutation p.P390S 0.88 deleterious(0.04) benign(0.212) TCGA-DU-6410-01 5 138643853 138643853 A G MATR3 Missense_Mutation p.Y250C 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-DU-6410-01 5 33445453 33445453 A G TARS Silent p.Q27Q 0.20 TCGA-DU-6410-01 6 109854548 109854548 C T AK9 Missense_Mutation p.R1159H 0.46 deleterious(0) probably_damaging(1) TCGA-DU-6410-01 6 138657616 138657616 T C KIAA1244 Missense_Mutation p.I2176T 0.47 tolerated_low_confidence(0.1) benign(0.284) TCGA-DU-6410-01 6 31856769 31856769 C T EHMT2 Missense_Mutation p.G398E 0.52 tolerated(0.24) benign(0.444) TCGA-DU-6410-01 6 74111641 74111641 G A DDX43 Missense_Mutation p.G166R 0.04 tolerated(0.47) benign(0.003) TCGA-DU-6410-01 6 74191908 74191908 G A MTO1 Missense_Mutation p.R509Q 0.08 deleterious(0) probably_damaging(0.939) TCGA-DU-6410-01 7 117304899 117304899 C T CFTR Missense_Mutation p.A1374V 0.22 deleterious(0) probably_damaging(0.995) TCGA-DU-6410-01 7 128582133 128582133 G A IRF5 5'UTR 0.32 TCGA-DU-6410-01 7 94163000 94163000 A G CASD1 Missense_Mutation p.K172E 0.31 deleterious(0) probably_damaging(0.998) TCGA-DU-6410-01 8 124664667 124664667 G A KLHL38 Missense_Mutation p.A167V 0.47 tolerated(0.1) benign(0.012) TCGA-DU-6410-01 9 133506050 133506050 G A FUBP3 Missense_Mutation p.G385R 0.38 tolerated(0.07) probably_damaging(0.971) TCGA-DU-6410-01 9 136230559 136230559 G A SURF4 Missense_Mutation p.T207I 0.06 tolerated(1) benign(0.038) TCGA-DU-6410-01 X 41057788 41057788 T C USP9X Missense_Mutation p.I1463T 0.92 tolerated(0.2) benign(0.034) TCGA-DU-6542-01 11 48285724 48285724 C A OR4X1 Missense_Mutation p.F104L 0.37 tolerated(0.16) benign(0.056) TCGA-DU-6542-01 11 55035824 55035824 A G TRIM48 Splice_Site p.X186_splice 0.37 TCGA-DU-6542-01 11 56230846 56230846 G C OR5M9 Missense_Mutation p.T11S 0.17 deleterious(0) benign(0.001) TCGA-DU-6542-01 11 73007739 73007739 C T P2RY6 Missense_Mutation p.T59I 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-DU-6542-01 15 99673304 99673304 C T SYNM 3'UTR 0.55 TCGA-DU-6542-01 17 48733300 48733300 C T ABCC3 Silent p.C51C 0.13 TCGA-DU-6542-01 17 58556547 58556547 C G APPBP2 Missense_Mutation p.E155D 0.36 tolerated(0.51) benign(0.001) TCGA-DU-6542-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.87 deleterious(0) probably_damaging(1) TCGA-DU-6542-01 1 11883807 11883810 TGAA - CLCN6 Frame_Shift_Del p.N167Afs*2 0.34 TCGA-DU-6542-01 1 169581487 169581487 C A SELP Missense_Mutation p.G310V 0.04 deleterious(0) probably_damaging(1) TCGA-DU-6542-01 1 175046809 175046809 C A TNN Silent p.I85I 0.43 TCGA-DU-6542-01 1 186045567 186045567 A T HMCN1 Silent p.P2766P 0.35 TCGA-DU-6542-01 1 20442002 20442002 C T PLA2G2D Missense_Mutation p.C97Y 0.40 deleterious(0) probably_damaging(1) TCGA-DU-6542-01 1 62586854 62586854 G A INADL Missense_Mutation p.G1631D 0.37 tolerated(0.62) benign(0.091) TCGA-DU-6542-01 1 9100209 9100209 G C SLC2A5 Missense_Mutation p.A204G 0.25 tolerated(0.06) benign(0.075) TCGA-DU-6542-01 22 24808653 24808653 G T SPECC1L Missense_Mutation p.S1081I 0.05 deleterious(0) probably_damaging(0.993) TCGA-DU-6542-01 2 170537668 170537668 G C CCDC173 Missense_Mutation p.T48S 0.43 deleterious(0.02) benign(0.345) TCGA-DU-6542-01 2 179422678 179422678 G C TTN Missense_Mutation p.L29135V 0.07 TCGA-DU-6542-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-6542-01 2 234602346 234602346 C T UGT1A6 Silent p.L232L 0.07 TCGA-DU-6542-01 2 242003028 242003028 C T SNED1 Missense_Mutation p.P799L 0.29 deleterious(0.03) possibly_damaging(0.573) TCGA-DU-6542-01 3 113098287 113098287 A G WDR52 Missense_Mutation p.F722L 0.37 tolerated(0.61) benign(0.001) TCGA-DU-6542-01 3 48694173 48694173 G A CELSR3 Missense_Mutation p.R1453C 0.43 deleterious(0) probably_damaging(0.97) TCGA-DU-6542-01 4 177605151 177605151 G C VEGFC Missense_Mutation p.P397A 0.48 tolerated(0.47) benign(0.005) TCGA-DU-6542-01 4 177605165 177605165 T C VEGFC Missense_Mutation p.Q392R 0.47 tolerated(1) benign(0.03) TCGA-DU-6542-01 6 30228210 30228210 C T HCG17 Intron 0.46 TCGA-DU-6542-01 6 74117789 74117789 A G DDX43 Missense_Mutation p.S382G 0.70 deleterious(0.02) benign(0.045) TCGA-DU-6542-01 7 100370923 100370923 C T ZAN Missense_Mutation p.P1814L 0.44 unknown(0) TCGA-DU-6542-01 7 142609711 142609711 G A TRPV5 Silent p.I575I 0.12 TCGA-DU-6542-01 7 150911221 150911221 G A ABCF2 Silent p.D597D 0.36 TCGA-DU-6542-01 8 52733124 52733124 A T PCMTD1 Silent p.T287T 0.04 TCGA-DU-6542-01 9 8376664 8376664 C T PTPRD Silent p.T1483T 0.25 TCGA-DU-7006-01 11 124756934 124756934 C T ROBO4 Missense_Mutation p.V792M 0.45 deleterious(0.01) possibly_damaging(0.623) TCGA-DU-7006-01 11 134158762 134158762 C A GLB1L3 Missense_Mutation p.T236K 0.08 tolerated(0.95) benign(0) TCGA-DU-7006-01 11 62931428 62931429 AA - SLC22A25 Frame_Shift_Del p.F504Cfs*13 0.09 TCGA-DU-7006-01 12 9304243 9304243 C T PZP Missense_Mutation p.R1413Q 0.09 tolerated(0.16) probably_damaging(0.985) TCGA-DU-7006-01 13 23907744 23907744 C T SACS Missense_Mutation p.G3424E 0.28 benign(0) TCGA-DU-7006-01 14 105415522 105415522 G A AHNAK2 Missense_Mutation p.P2089L 0.29 possibly_damaging(0.763) TCGA-DU-7006-01 14 20296476 20296476 G A OR4N2 Missense_Mutation p.R290H 0.30 deleterious(0.02) benign(0.032) TCGA-DU-7006-01 14 47120456 47120456 G A RPL10L Missense_Mutation p.R162C 0.35 tolerated(0.14) benign(0.089) TCGA-DU-7006-01 14 75574067 75574067 C T NEK9 Missense_Mutation p.D436N 0.34 tolerated(0.18) benign(0.376) TCGA-DU-7006-01 14 75574125 75574125 C T NEK9 Silent p.Q416Q 0.28 TCGA-DU-7006-01 14 96875258 96875258 C T AK7 Missense_Mutation p.R160C 0.30 tolerated(0.09) possibly_damaging(0.677) TCGA-DU-7006-01 15 42742995 42742995 G A ZNF106 Missense_Mutation p.P469L 0.29 tolerated(0.79) benign(0.001) TCGA-DU-7006-01 15 48902974 48902974 C T FBN1 Missense_Mutation p.M99I 0.27 benign(0.057) TCGA-DU-7006-01 15 85383197 85383197 G A ALPK3 Silent p.G431G 0.38 TCGA-DU-7006-01 15 92973307 92973307 T G ST8SIA2 Missense_Mutation p.S43A 0.39 benign(0.016) TCGA-DU-7006-01 16 81157276 81157276 G A PKD1L2 RNA 0.26 TCGA-DU-7006-01 16 90162091 90162091 C T TUBB8P7 RNA 0.32 TCGA-DU-7006-01 17 21319552 21319552 G A KCNJ12 Missense_Mutation p.E300K 0.08 deleterious(0.01) probably_damaging(1) TCGA-DU-7006-01 17 29654857 29654857 G A NF1 Missense_Mutation p.R1870Q 0.20 deleterious(0) probably_damaging(0.945) TCGA-DU-7006-01 17 57746287 57746287 A C CLTC Missense_Mutation p.K760Q 0.06 deleterious(0) possibly_damaging(0.869) TCGA-DU-7006-01 18 19751547 19751547 T A GATA6 Missense_Mutation p.Y148N 0.34 deleterious(0) possibly_damaging(0.903) TCGA-DU-7006-01 19 11917410 11917410 G A ZNF491 Silent p.P214P 0.07 TCGA-DU-7006-01 19 3907776 3907776 G A ATCAY Missense_Mutation p.A135T 0.08 tolerated(0.19) possibly_damaging(0.625) TCGA-DU-7006-01 19 43585278 43585278 A T PSG2 Missense_Mutation p.L62H 0.28 tolerated(0.08) probably_damaging(1) TCGA-DU-7006-01 19 50098329 50098329 A G PRR12 Missense_Mutation p.N246S 0.24 possibly_damaging(0.486) TCGA-DU-7006-01 19 54291194 54291194 C T MIR372 RNA 0.23 TCGA-DU-7006-01 19 5455455 5455455 G A ZNRF4 5'UTR 0.40 TCGA-DU-7006-01 19 54711477 54711477 T C RPS9 3'UTR 0.20 TCGA-DU-7006-01 19 8152978 8152978 G A FBN3 Silent p.D2154D 0.35 TCGA-DU-7006-01 1 181708361 181708361 G A CACNA1E Missense_Mutation p.V1231I 0.37 tolerated(0.34) possibly_damaging(0.699) TCGA-DU-7006-01 1 196197431 196197431 G A KCNT2 Missense_Mutation p.P1111S 0.25 tolerated(0.14) possibly_damaging(0.871) TCGA-DU-7006-01 1 22915717 22915717 G A EPHA8 Intron 0.34 TCGA-DU-7006-01 1 24977940 24977940 C T SRRM1 Missense_Mutation p.P188S 0.46 unknown(0) TCGA-DU-7006-01 1 46499563 46499563 G C MAST2 Missense_Mutation p.K1209N 0.39 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-DU-7006-01 1 46597617 46597618 - TGTA PIK3R3 Frame_Shift_Ins p.N3Ifs*11 0.37 TCGA-DU-7006-01 1 54266521 54266521 C A NDC1 Missense_Mutation p.G356V 0.35 deleterious(0) probably_damaging(1) TCGA-DU-7006-01 20 18794627 18794627 G A SCP2D1 Silent p.R56R 0.32 TCGA-DU-7006-01 20 3236735 3236735 G A C20orf194 Nonsense_Mutation p.Q1060* 0.11 TCGA-DU-7006-01 20 43851148 43851148 G A SEMG2 Missense_Mutation p.R292H 0.33 tolerated(0.14) benign(0.011) TCGA-DU-7006-01 20 62193043 62193043 A G HELZ2 Silent p.A2249A 0.08 TCGA-DU-7006-01 21 47700424 47700424 G A MCM3AP Silent p.H503H 0.38 TCGA-DU-7006-01 22 37462868 37462868 G A TMPRSS6 Nonsense_Mutation p.Q759* 0.25 TCGA-DU-7006-01 22 50900448 50900448 A T SBF1 Missense_Mutation p.F833I 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-7006-01 2 169780102 169780102 G A ABCB11 3'UTR 0.36 TCGA-DU-7006-01 2 179319235 179319235 C T DFNB59 Missense_Mutation p.L130F 0.50 deleterious(0) probably_damaging(0.999) TCGA-DU-7006-01 2 204732687 204732687 C T CTLA4 Missense_Mutation p.R8W 0.12 deleterious_low_confidence(0) possibly_damaging(0.875) TCGA-DU-7006-01 2 37217840 37217840 T C HEATR5B Missense_Mutation p.N1883S 0.16 tolerated(0.62) benign(0.001) TCGA-DU-7006-01 3 12421382 12421382 C G PPARG Missense_Mutation p.P88A 0.24 tolerated_low_confidence(0.63) benign(0.078) TCGA-DU-7006-01 3 178936095 178936095 A C PIK3CA Missense_Mutation p.Q546P 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-DU-7006-01 3 184043126 184043126 C T EIF4G1 Missense_Mutation p.R983C 0.35 deleterious(0) probably_damaging(0.941) TCGA-DU-7006-01 3 194181443 194181443 C T ATP13A3 Missense_Mutation p.A57T 0.38 deleterious(0.03) possibly_damaging(0.598) TCGA-DU-7006-01 3 27352499 27352499 G A NEK10 Nonsense_Mutation p.Q193* 0.26 TCGA-DU-7006-01 4 122853813 122853813 G T TRPC3 Missense_Mutation p.F200L 0.24 tolerated(0.05) possibly_damaging(0.897) TCGA-DU-7006-01 4 1316242 1316242 C G MAEA Missense_Mutation p.T177S 0.18 tolerated(0.44) benign(0.065) TCGA-DU-7006-01 4 155719190 155719190 C T RBM46 Nonsense_Mutation p.R127* 0.25 TCGA-DU-7006-01 4 55976872 55976872 C T KDR Missense_Mutation p.R347H 0.07 tolerated(0.13) benign(0.005) TCGA-DU-7006-01 5 101583042 101583042 C T SLCO4C1 Silent p.A575A 0.37 TCGA-DU-7006-01 5 126790302 126790302 G A MEGF10 Missense_Mutation p.D1009N 0.27 tolerated(0.05) probably_damaging(0.996) TCGA-DU-7006-01 5 140746124 140746124 G A PCDHGA5 Missense_Mutation p.V743M 0.40 tolerated_low_confidence(0.17) benign(0.15) TCGA-DU-7006-01 5 32712556 32712556 A T NPR3 Missense_Mutation p.Q225L 0.09 tolerated(0.23) benign(0.051) TCGA-DU-7006-01 6 10707679 10707679 G A PAK1IP1 Missense_Mutation p.E258K 0.22 tolerated(0.34) possibly_damaging(0.491) TCGA-DU-7006-01 6 117130650 117130650 C T GPRC6A Missense_Mutation p.A109T 0.38 deleterious(0.01) possibly_damaging(0.658) TCGA-DU-7006-01 7 130038639 130038639 C T CEP41 3'UTR 0.24 TCGA-DU-7006-01 7 142231794 142231794 C T TRBV10-1 Silent p.A41A 0.19 TCGA-DU-7006-01 7 150704320 150704320 G A NOS3 Missense_Mutation p.G690S 0.18 deleterious(0) possibly_damaging(0.714) TCGA-DU-7006-01 7 55221711 55221711 G C EGFR Missense_Mutation p.R252P 0.12 tolerated(0.06) possibly_damaging(0.838) TCGA-DU-7006-01 7 94947701 94947701 G A PON1 Nonsense_Mutation p.R27* 0.07 TCGA-DU-7006-01 8 139149434 139149434 G T FAM135B Missense_Mutation p.A1324D 0.40 deleterious(0) probably_damaging(0.978) TCGA-DU-7006-01 8 143427185 143427185 G A TSNARE1 Nonsense_Mutation p.Q53* 0.32 TCGA-DU-7006-01 8 86126971 86126971 C A C8orf59 Intron 0.40 TCGA-DU-7006-01 9 128061195 128061195 T C GAPVD1 5'UTR 0.22 TCGA-DU-7006-01 9 139354230 139354230 C G SEC16A Missense_Mutation p.A1724P 0.50 deleterious(0.01) possibly_damaging(0.786) TCGA-DU-7006-01 9 97355890 97355890 G A FBP2 Missense_Mutation p.T40M 0.42 tolerated(0.14) probably_damaging(1) TCGA-DU-7006-01 X 103411604 103411604 C T FAM199X Silent p.F46F 0.11 TCGA-DU-7006-01 X 122747329 122747329 G C THOC2 Nonsense_Mutation p.S1533* 0.35 TCGA-DU-7006-01 X 133087087 133087087 C T GPC3 Silent p.A109A 0.29 TCGA-DU-7006-01 X 140996473 140996473 G A MAGEC1 Missense_Mutation p.V1095I 0.04 tolerated(0.05) unknown(0) TCGA-DU-7006-01 X 48418954 48418954 C G TBC1D25 Missense_Mutation p.S553C 0.40 tolerated(0.1) benign(0.237) TCGA-DU-7006-01 X 70784541 70784541 G T OGT Missense_Mutation p.V843L 0.28 deleterious(0.03) possibly_damaging(0.755) TCGA-DU-7007-01 10 92631801 92631801 G A RPP30 Missense_Mutation p.G20R 0.43 tolerated(0.6) benign(0.003) TCGA-DU-7007-01 11 124564278 124564278 G A SPA17 Missense_Mutation p.R131K 0.14 deleterious(0.03) possibly_damaging(0.6) TCGA-DU-7007-01 11 64677554 64677554 C A ATG2A Silent p.L607L 0.13 TCGA-DU-7007-01 12 11420518 11420518 G A PRB3 Intron 0.09 TCGA-DU-7007-01 12 11420581 11420581 G A PRB3 Missense_Mutation p.P201L 0.05 tolerated(0.22) unknown(0) TCGA-DU-7007-01 12 124332564 124332564 C T DNAH10 Silent p.T1839T 0.61 TCGA-DU-7007-01 12 13102595 13102595 C T GPRC5D Missense_Mutation p.V242I 0.15 tolerated(0.56) benign(0.001) TCGA-DU-7007-01 12 9094479 9094479 C T M6PR Missense_Mutation p.G257S 0.11 deleterious(0) probably_damaging(1) TCGA-DU-7007-01 12 95868076 95868078 AAG - METAP2 In_Frame_Del p.K44del 0.20 TCGA-DU-7007-01 13 111147702 111147702 C T COL4A2 Silent p.H1216H 0.10 TCGA-DU-7007-01 15 24921762 24921762 C T NPAP1 Missense_Mutation p.R250W 0.16 tolerated(0.08) benign(0.002) TCGA-DU-7007-01 15 49776652 49776652 C T FGF7 Missense_Mutation p.T179M 0.25 deleterious(0.01) probably_damaging(0.958) TCGA-DU-7007-01 15 59971949 59971949 C T BNIP2 Missense_Mutation p.G167E 0.13 deleterious(0.02) possibly_damaging(0.469) TCGA-DU-7007-01 15 74554908 74554908 C T CCDC33 Nonsense_Mutation p.Q105* 0.24 TCGA-DU-7007-01 16 20043246 20043246 C G GPR139 Silent p.R291R 0.14 TCGA-DU-7007-01 16 30795077 30795077 G A ZNF629 Missense_Mutation p.S191L 0.10 deleterious(0) probably_damaging(0.997) TCGA-DU-7007-01 16 56442018 56442018 G A AMFR Missense_Mutation p.S175L 0.29 deleterious(0) possibly_damaging(0.781) TCGA-DU-7007-01 17 65105453 65105453 T C HELZ Missense_Mutation p.Y1423C 0.38 deleterious_low_confidence(0) unknown(0) TCGA-DU-7007-01 17 71375616 71375616 G A SDK2 Missense_Mutation p.P1612L 0.07 tolerated(0.09) possibly_damaging(0.764) TCGA-DU-7007-01 17 72246149 72246149 C T TTYH2 Silent p.P335P 0.40 TCGA-DU-7007-01 17 7579311 7579311 C G TP53 Splice_Site p.X125_splice 0.77 TCGA-DU-7007-01 19 51273893 51273893 T A GPR32 Missense_Mutation p.S12R 0.30 deleterious(0.01) benign(0.016) TCGA-DU-7007-01 19 6307219 6307219 G A ACER1 Missense_Mutation p.R191C 0.20 deleterious(0) benign(0.291) TCGA-DU-7007-01 1 102290602 102290602 C T OLFM3 Missense_Mutation p.R191H 0.14 tolerated(0.64) benign(0.003) TCGA-DU-7007-01 1 32842101 32842101 G T BSDC1 Silent p.S323S 0.40 TCGA-DU-7007-01 20 44567656 44567656 C T PCIF1 Silent p.H6H 0.13 TCGA-DU-7007-01 22 39497965 39497965 C T APOBEC3H Missense_Mutation p.P154L 0.76 deleterious(0.01) probably_damaging(0.997) TCGA-DU-7007-01 2 179613099 179613099 A C TTN Intron 0.16 TCGA-DU-7007-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7007-01 3 128986859 128986859 C A COPG1 Missense_Mutation p.L542I 0.13 deleterious(0.03) benign(0.259) TCGA-DU-7007-01 3 155198970 155198970 G A PLCH1 Silent p.T1623T 0.13 TCGA-DU-7007-01 3 166960403 166960403 G T ZBBX Silent p.T761T 0.29 TCGA-DU-7007-01 3 74419100 74419100 G C CNTN3 Missense_Mutation p.P234R 0.16 deleterious(0.02) possibly_damaging(0.628) TCGA-DU-7007-01 3 93733522 93733522 A G STX19 Silent p.L198L 0.14 TCGA-DU-7007-01 4 105412082 105412082 C T CXXC4 Missense_Mutation p.G293E 0.17 deleterious(0.03) benign(0.361) TCGA-DU-7007-01 4 59959 59959 A G ZNF595 Missense_Mutation p.I47V 0.06 tolerated_low_confidence(1) benign(0.109) TCGA-DU-7007-01 5 161118969 161118969 G A GABRA6 Missense_Mutation p.M283I 0.12 deleterious(0.01) possibly_damaging(0.869) TCGA-DU-7007-01 5 36152899 36152899 T A SKP2 Missense_Mutation p.L12Q 0.27 tolerated(0.16) benign(0.001) TCGA-DU-7007-01 6 117746774 117746774 T - ROS1 Frame_Shift_Del p.T16Lfs*15 0.30 TCGA-DU-7007-01 6 132022332 132022332 G A OR2A4 Silent p.I70I 0.56 TCGA-DU-7007-01 6 160888649 160888649 T C LPAL2 RNA 0.31 TCGA-DU-7007-01 7 100679309 100679309 C G MUC17 Missense_Mutation p.P1538A 0.15 unknown(0) TCGA-DU-7007-01 7 127255046 127255046 G C PAX4 Missense_Mutation p.P75R 0.41 tolerated(0.15) possibly_damaging(0.754) TCGA-DU-7007-01 7 142655011 142655011 C T KEL Missense_Mutation p.R192Q 0.28 tolerated(0.76) benign(0.011) TCGA-DU-7007-01 7 76054391 76054391 C T ZP3 Missense_Mutation p.T37M 0.30 tolerated(0.1) benign(0.432) TCGA-DU-7007-01 7 96651603 96651603 G C DLX5 Missense_Mutation p.S145C 0.39 deleterious(0) possibly_damaging(0.472) TCGA-DU-7007-01 8 121290392 121290392 A T COL14A1 Nonsense_Mutation p.K1086* 0.46 TCGA-DU-7007-01 9 136501814 136501814 G A DBH Silent p.G107G 0.19 TCGA-DU-7007-01 9 95481306 95481306 C T BICD2 Missense_Mutation p.V541M 0.25 deleterious(0) probably_damaging(0.997) TCGA-DU-7007-01 X 107938508 107938508 A T COL4A5 Silent p.A1611A 0.25 TCGA-DU-7007-01 X 76814313 76814313 G A ATRX Nonsense_Mutation p.R2111* 0.71 TCGA-DU-7008-01 10 1061799 1061799 G A GTPBP4 Missense_Mutation p.R572Q 0.05 tolerated(0.16) benign(0.009) TCGA-DU-7008-01 11 129739825 129739825 G A NFRKB Missense_Mutation p.P1057L 0.08 tolerated_low_confidence(0.1) probably_damaging(0.982) TCGA-DU-7008-01 11 66636386 66636386 C T PC Missense_Mutation p.G318D 0.42 tolerated(0.2) probably_damaging(0.955) TCGA-DU-7008-01 11 71718269 71718269 C T NUMA1 Missense_Mutation p.R1810H 0.14 probably_damaging(0.999) TCGA-DU-7008-01 11 83676479 83676479 G A DLG2 Silent p.H363H 0.12 TCGA-DU-7008-01 12 42835164 42835164 G A PPHLN1 Silent p.L319L 0.07 TCGA-DU-7008-01 14 94674875 94674875 C T PPP4R4 Missense_Mutation p.T89M 0.07 deleterious(0.01) probably_damaging(0.978) TCGA-DU-7008-01 15 102304783 102304783 G A DNM1P47 RNA 0.64 TCGA-DU-7008-01 16 34712226 34712226 T A RP11-80F22.9 RNA 0.18 TCGA-DU-7008-01 17 7577129 7577129 A G TP53 Missense_Mutation p.F270S 0.42 deleterious(0) probably_damaging(0.999) TCGA-DU-7008-01 18 10671757 10671757 A T PIEZO2 Missense_Mutation p.S2676T 0.11 deleterious(0) benign(0.185) TCGA-DU-7008-01 19 11144096 11144098 AGA - SMARCA4 In_Frame_Del p.K1227del 0.37 TCGA-DU-7008-01 19 12739849 12739849 G T ZNF791 Silent p.G502G 0.40 TCGA-DU-7008-01 19 16238875 16238875 G A RAB8A Missense_Mutation p.A152T 0.09 deleterious(0) probably_damaging(1) TCGA-DU-7008-01 19 38055540 38055540 C T ZNF571 Missense_Mutation p.C597Y 0.28 tolerated(1) benign(0) TCGA-DU-7008-01 19 50394683 50394685 CTT - IL4I1 In_Frame_Del p.K227del 0.19 TCGA-DU-7008-01 1 12884887 12884887 G T PRAMEF11 Silent p.P408P 0.05 TCGA-DU-7008-01 1 16074101 16074101 C A TMEM82 Missense_Mutation p.Q336K 0.28 tolerated(0.38) unknown(0) TCGA-DU-7008-01 1 248789593 248789593 C T OR2T11 Silent p.T279T 0.09 TCGA-DU-7008-01 20 37536526 37536526 C T PPP1R16B Silent p.L326L 0.30 TCGA-DU-7008-01 20 58569267 58569267 C T CDH26 Intron 0.33 TCGA-DU-7008-01 21 31802769 31802769 C T KRTAP13-4 Missense_Mutation p.A59V 0.10 deleterious(0.01) benign(0.063) TCGA-DU-7008-01 22 50944111 50944111 G A LMF2 Missense_Mutation p.T303M 0.37 tolerated(0.32) benign(0.021) TCGA-DU-7008-01 2 179260333 179260333 A G OSBPL6 3'UTR 0.50 TCGA-DU-7008-01 2 198268407 198268407 A G SF3B1 Missense_Mutation p.S541P 0.54 deleterious(0.02) probably_damaging(0.964) TCGA-DU-7008-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7008-01 2 231973908 231973908 G A HTR2B Nonsense_Mutation p.Q257* 0.40 TCGA-DU-7008-01 3 185161416 185161416 A G MAP3K13 Silent p.K281K 0.40 TCGA-DU-7008-01 4 187524637 187524637 A G FAT1 Silent p.V3681V 0.23 TCGA-DU-7008-01 5 118867014 118867014 G A HSD17B4 Silent p.K661K 0.45 TCGA-DU-7008-01 5 141381656 141381656 A G GNPDA1 Missense_Mutation p.Y270H 0.27 tolerated_low_confidence(0.44) benign(0.001) TCGA-DU-7008-01 5 150632738 150632738 C G GM2A 5'UTR 0.30 TCGA-DU-7008-01 5 150925553 150925553 A G FAT2 Missense_Mutation p.I1712T 0.50 probably_damaging(0.911) TCGA-DU-7008-01 5 156349194 156349194 T A TIMD4 Missense_Mutation p.M310L 0.08 tolerated(0.69) benign(0.002) TCGA-DU-7008-01 6 42986679 42986679 G A KLHDC3 Missense_Mutation p.G300D 0.06 tolerated(0.09) possibly_damaging(0.493) TCGA-DU-7008-01 7 142723665 142723665 G A OR9A2 Silent p.C185C 0.20 TCGA-DU-7008-01 9 95795123 95795123 C T FGD3 Silent p.L585L 0.05 TCGA-DU-7008-01 X 100169558 100169558 T A XKRX Missense_Mutation p.K373N 0.45 deleterious(0.02) possibly_damaging(0.864) TCGA-DU-7008-01 X 103349504 103349504 C T SLC25A53 Missense_Mutation p.R146H 0.40 tolerated(0.11) benign(0.099) TCGA-DU-7008-01 X 153069774 153069774 G T PDZD4 Silent p.P448P 0.24 TCGA-DU-7008-01 X 37587096 37587096 T A XK Missense_Mutation p.V239D 0.29 deleterious(0.02) benign(0.251) TCGA-DU-7008-01 X 47101045 47101045 G A USP11 Missense_Mutation p.V419M 0.57 deleterious(0) probably_damaging(0.979) TCGA-DU-7008-01 X 48116711 48116711 G T SSX1 Missense_Mutation p.R12M 0.05 tolerated(0.06) possibly_damaging(0.88) TCGA-DU-7008-01 X 76940037 76940038 - T ATRX Frame_Shift_Ins p.N237Kfs*23 0.35 TCGA-DU-7009-01 10 81052015 81052015 G A ZMIZ1 Missense_Mutation p.A287T 0.08 benign(0.318) TCGA-DU-7009-01 11 55433640 55433640 T C OR4C6 3'UTR 0.14 TCGA-DU-7009-01 11 64815924 64815924 G A NAALADL1 Intron 0.25 TCGA-DU-7009-01 11 71821621 71821621 T C ANAPC15 Missense_Mutation p.N50S 0.43 tolerated(0.08) benign(0.006) TCGA-DU-7009-01 12 101437335 101437335 T A ANO4 Silent p.A356A 0.27 TCGA-DU-7009-01 12 65460426 65460426 T C WIF1 Missense_Mutation p.D242G 0.12 deleterious(0) possibly_damaging(0.66) TCGA-DU-7009-01 16 2550805 2550805 G T TBC1D24 Missense_Mutation p.G509V 0.14 deleterious(0) probably_damaging(0.992) TCGA-DU-7009-01 16 2814039 2814039 A T SRRM2 Missense_Mutation p.L1170F 0.38 unknown(0) TCGA-DU-7009-01 17 19459308 19459308 G A SLC47A1 Missense_Mutation p.G285D 0.07 deleterious(0) probably_damaging(1) TCGA-DU-7009-01 17 37187191 37187191 G A CTD-2206N4.2 5'Flank 0.48 TCGA-DU-7009-01 19 49843592 49843592 C T CD37 3'UTR 0.12 TCGA-DU-7009-01 1 16946471 16946471 G C RP5-1182A14.5 3'Flank 0.28 TCGA-DU-7009-01 1 220203735 220203735 C A EPRS Missense_Mutation p.A206S 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-DU-7009-01 1 247013166 247013167 - T AHCTF1 Frame_Shift_Ins p.L2057Tfs*6 0.14 TCGA-DU-7009-01 1 27106319 27106320 TT - ARID1A Frame_Shift_Del p.L1977Rfs*21 0.41 TCGA-DU-7009-01 2 10917798 10917798 C T ATP6V1C2 Missense_Mutation p.P305S 0.35 tolerated_low_confidence(0.78) benign(0.049) TCGA-DU-7009-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7009-01 2 84518074 84518074 C T FUNDC2P2 RNA 0.44 TCGA-DU-7009-01 4 183815663 183815663 C T DCTD Missense_Mutation p.A125T 0.32 tolerated(0.15) possibly_damaging(0.64) TCGA-DU-7009-01 5 131722739 131722739 T G SLC22A5 Missense_Mutation p.W283G 0.35 deleterious(0) probably_damaging(0.998) TCGA-DU-7009-01 5 36961657 36961657 C T NIPBL Nonsense_Mutation p.Q144* 0.35 TCGA-DU-7009-01 6 169621604 169621604 C T THBS2 Missense_Mutation p.D1098N 0.06 deleterious(0) probably_damaging(0.993) TCGA-DU-7009-01 6 31630129 31630129 G C GPANK1 Missense_Mutation p.L329V 0.31 tolerated(0.26) probably_damaging(0.994) TCGA-DU-7009-01 9 79324331 79324331 G A PRUNE2 Silent p.N953N 0.07 TCGA-DU-7009-01 X 122616848 122616848 T A GRIA3 Missense_Mutation p.Y880N 0.38 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-DU-7009-01 X 135106545 135106545 C T SLC9A6 Missense_Mutation p.R507W 0.07 deleterious(0) probably_damaging(1) TCGA-DU-7009-01 X 148037323 148037323 C T AFF2 Missense_Mutation p.P583L 0.42 tolerated(0.42) probably_damaging(0.999) TCGA-DU-7009-01 X 70793627 70793627 G A OGT Missense_Mutation p.V1042I 0.25 deleterious(0.05) benign(0.009) TCGA-DU-7010-01 10 113919721 113919721 C T GPAM Missense_Mutation p.R617Q 0.18 tolerated(0.24) benign(0.003) TCGA-DU-7010-01 10 124357525 124357525 G A DMBT1 Missense_Mutation p.V985I 0.24 tolerated(0.46) benign(0.084) TCGA-DU-7010-01 10 27322258 27322258 G - ANKRD26 Frame_Shift_Del p.Q1235Nfs*18 0.13 TCGA-DU-7010-01 10 75675025 75675025 G A PLAU Silent p.P329P 0.19 TCGA-DU-7010-01 10 87406904 87406904 G A GRID1 Intron 0.24 TCGA-DU-7010-01 11 123676272 123676272 G A OR6M1 Silent p.N262N 0.24 TCGA-DU-7010-01 11 56237501 56237501 G T OR5M3 Missense_Mutation p.T158K 0.22 deleterious(0) probably_damaging(0.98) TCGA-DU-7010-01 11 62400106 62400106 G A GANAB Silent p.R331R 0.26 TCGA-DU-7010-01 12 111748299 111748299 C A CUX2 Silent p.I571I 0.33 TCGA-DU-7010-01 12 112321472 112321472 A G MAPKAPK5 Missense_Mutation p.I250V 0.16 deleterious(0.01) possibly_damaging(0.621) TCGA-DU-7010-01 12 9995006 9995006 G A KLRF1 Silent p.V188V 0.15 TCGA-DU-7010-01 13 50586329 50586329 A G TRIM13 Missense_Mutation p.I88V 0.66 deleterious(0.02) possibly_damaging(0.861) TCGA-DU-7010-01 14 105408008 105408008 C T AHNAK2 Missense_Mutation p.V4594M 0.26 benign(0.18) TCGA-DU-7010-01 14 23523984 23523984 C T CDH24 Silent p.L196L 0.33 TCGA-DU-7010-01 14 24839464 24839464 G A NFATC4 Missense_Mutation p.R350H 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-DU-7010-01 14 37051529 37051529 C T NKX2-8 Silent p.A22A 0.14 TCGA-DU-7010-01 14 74060453 74060453 G A ACOT4 Missense_Mutation p.G169S 0.26 deleterious(0.04) benign(0.18) TCGA-DU-7010-01 15 24924470 24924470 T A NPAP1 Nonsense_Mutation p.C1152* 0.16 TCGA-DU-7010-01 15 30058630 30058630 C T TJP1 Missense_Mutation p.R143Q 0.26 tolerated(0.12) benign(0.013) TCGA-DU-7010-01 15 40656103 40656103 C A DISP2 Missense_Mutation p.R133S 0.11 tolerated(0.46) benign(0.013) TCGA-DU-7010-01 16 19126381 19126381 G T ITPRIPL2 Missense_Mutation p.A200S 0.30 tolerated(0.51) benign(0.018) TCGA-DU-7010-01 16 24581321 24581321 C - RBBP6 Frame_Shift_Del p.P1104Qfs*7 0.28 TCGA-DU-7010-01 16 82034402 82034402 C G SDR42E1 Missense_Mutation p.G21A 0.19 deleterious(0) probably_damaging(0.984) TCGA-DU-7010-01 17 48917362 48917362 G A WFIKKN2 Missense_Mutation p.R238Q 0.13 tolerated(0.3) benign(0.049) TCGA-DU-7010-01 17 56540259 56540259 G C HSF5 Missense_Mutation p.Q476E 0.52 deleterious(0.03) benign(0.328) TCGA-DU-7010-01 17 61972426 61972426 G A CSH1 Missense_Mutation p.R204C 0.13 deleterious(0.01) benign(0.329) TCGA-DU-7010-01 17 74003589 74003589 G T EVPL Silent p.A1899A 0.12 TCGA-DU-7010-01 17 74716489 74716489 C T JMJD6 Missense_Mutation p.D345N 0.12 tolerated(0.23) possibly_damaging(0.541) TCGA-DU-7010-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.80 deleterious(0) probably_damaging(1) TCGA-DU-7010-01 17 8701438 8701438 G T MFSD6L Missense_Mutation p.A334D 0.12 deleterious(0) probably_damaging(0.909) TCGA-DU-7010-01 18 21047458 21047458 G T RIOK3 Missense_Mutation p.K261N 0.10 deleterious(0) probably_damaging(0.963) TCGA-DU-7010-01 18 22056724 22056724 C G HRH4 Missense_Mutation p.T124S 0.11 deleterious(0) benign(0.029) TCGA-DU-7010-01 18 33257583 33257583 C T GALNT1 Missense_Mutation p.L115F 0.12 deleterious(0.01) probably_damaging(0.93) TCGA-DU-7010-01 19 1042063 1042063 G A ABCA7 Silent p.L101L 0.21 TCGA-DU-7010-01 19 2078564 2078564 G C MOB3A 5'UTR 0.09 TCGA-DU-7010-01 19 2878406 2878406 C T ZNF556 3'UTR 0.12 TCGA-DU-7010-01 19 35434793 35434793 G T ZNF30 Missense_Mutation p.R309I 0.36 deleterious(0.04) possibly_damaging(0.56) TCGA-DU-7010-01 19 41066266 41066266 A G SPTBN4 Missense_Mutation p.M1958V 0.14 deleterious(0) probably_damaging(0.978) TCGA-DU-7010-01 19 49094920 49094920 T A SULT2B1 Missense_Mutation p.S160T 0.12 tolerated(0.39) probably_damaging(0.926) TCGA-DU-7010-01 19 50156700 50156700 A C SCAF1 Silent p.R1018R 0.96 TCGA-DU-7010-01 19 51301536 51301536 G A C19orf48 Missense_Mutation p.P57L 0.15 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-DU-7010-01 19 51301602 51301602 G A C19orf48 Missense_Mutation p.P35L 0.15 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-DU-7010-01 19 54629912 54629912 C T PRPF31 Missense_Mutation p.R289W 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-DU-7010-01 19 55710148 55710148 G A PTPRH Missense_Mutation p.T518I 0.24 benign(0.173) TCGA-DU-7010-01 19 9237223 9237223 A T OR7G3 Missense_Mutation p.I135N 0.18 deleterious(0) possibly_damaging(0.77) TCGA-DU-7010-01 1 12918902 12918902 C A PRAMEF2 Missense_Mutation p.A13E 0.15 deleterious(0) possibly_damaging(0.863) TCGA-DU-7010-01 1 145457015 145457015 C G POLR3GL Missense_Mutation p.E182D 0.22 tolerated(0.28) benign(0.31) TCGA-DU-7010-01 1 152060485 152060485 A - TCHHL1 Frame_Shift_Del p.Q46Sfs*15 0.25 TCGA-DU-7010-01 1 152284454 152284454 G T FLG Missense_Mutation p.H970N 0.12 possibly_damaging(0.833) TCGA-DU-7010-01 1 169347582 169347582 A G BLZF1 Silent p.L161L 0.33 TCGA-DU-7010-01 1 181684510 181684510 G A CACNA1E Missense_Mutation p.G403E 0.25 tolerated(0.95) probably_damaging(0.931) TCGA-DU-7010-01 1 186934577 186934577 A G PLA2G4A Missense_Mutation p.D539G 0.16 deleterious(0.03) probably_damaging(0.95) TCGA-DU-7010-01 1 197053379 197053379 C A ASPM 3'UTR 0.56 TCGA-DU-7010-01 1 206649566 206649566 G A IKBKE Missense_Mutation p.R134H 0.06 deleterious(0) probably_damaging(0.997) TCGA-DU-7010-01 1 248309136 248309136 A T OR2M5 Silent p.G229G 0.14 TCGA-DU-7010-01 1 248525025 248525025 G T OR2T4 Missense_Mutation p.G48V 0.13 deleterious(0) probably_damaging(1) TCGA-DU-7010-01 1 33236713 33236713 C T KIAA1522 Missense_Mutation p.R645C 0.11 deleterious(0.02) unknown(0) TCGA-DU-7010-01 1 39815264 39815264 C T MACF1 Missense_Mutation p.L1582F 0.12 possibly_damaging(0.543) TCGA-DU-7010-01 1 55072901 55072901 G A ACOT11 Missense_Mutation p.V489M 0.13 deleterious(0) probably_damaging(0.982) TCGA-DU-7010-01 21 43411516 43411516 G A ZBTB21 Missense_Mutation p.P897S 0.07 tolerated(0.12) benign(0.001) TCGA-DU-7010-01 21 45977932 45977932 G A KRTAP10-3 3'UTR 0.24 TCGA-DU-7010-01 22 18185020 18185020 T G BCL2L13 Silent p.P156P 0.10 TCGA-DU-7010-01 22 37696974 37696974 C T CYTH4 Missense_Mutation p.P154L 0.14 deleterious(0) probably_damaging(1) TCGA-DU-7010-01 22 41613109 41613109 G A L3MBTL2 Intron 0.24 TCGA-DU-7010-01 22 51011381 51011381 G C CPT1B Silent p.S425S 0.07 TCGA-DU-7010-01 2 109546658 109546658 C T EDAR Missense_Mutation p.C31Y 0.12 deleterious(0) probably_damaging(0.993) TCGA-DU-7010-01 2 159201746 159201746 G C CCDC148 Missense_Mutation p.Q78E 0.17 tolerated(0.48) benign(0.388) TCGA-DU-7010-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7010-01 2 220497018 220497018 G A SLC4A3 Missense_Mutation p.R359H 0.12 deleterious(0) benign(0.002) TCGA-DU-7010-01 2 73466844 73466844 G A CCT7 Missense_Mutation p.S27N 0.23 tolerated(1) benign(0.001) TCGA-DU-7010-01 3 183580581 183580581 C T PARL Silent p.K157K 0.08 TCGA-DU-7010-01 3 45744968 45744968 A G SACM1L Missense_Mutation p.D24G 0.24 tolerated(0.16) benign(0.008) TCGA-DU-7010-01 3 9781283 9781283 C T BRPF1 Silent p.C400C 0.24 TCGA-DU-7010-01 4 106967769 106967769 T C TBCK Missense_Mutation p.I880M 0.33 tolerated(0.14) benign(0.026) TCGA-DU-7010-01 4 36126576 36126576 G T ARAP2 Missense_Mutation p.D1218E 0.14 tolerated(1) benign(0.001) TCGA-DU-7010-01 4 38776590 38776590 G A TLR10 Missense_Mutation p.R208C 0.09 tolerated(0.32) benign(0.001) TCGA-DU-7010-01 4 6325273 6325273 C T PPP2R2C Missense_Mutation p.R367Q 0.10 tolerated(0.06) probably_damaging(0.988) TCGA-DU-7010-01 4 861174 861174 C G GAK Missense_Mutation p.E814D 0.16 tolerated(0.21) benign(0.005) TCGA-DU-7010-01 5 112176714 112176714 A C APC Missense_Mutation p.N1808T 0.16 benign(0.119) TCGA-DU-7010-01 5 127730892 127730892 T G FBN2 Missense_Mutation p.K385T 0.16 deleterious(0.02) possibly_damaging(0.482) TCGA-DU-7010-01 5 179247941 179247941 C T SQSTM1 Missense_Mutation p.A2V 0.33 deleterious_low_confidence(0.02) benign(0.439) TCGA-DU-7010-01 5 180043382 180043382 G A FLT4 Silent p.Y1068Y 0.19 TCGA-DU-7010-01 5 21817163 21817163 A C CDH12 Missense_Mutation p.F298C 0.21 deleterious(0.02) benign(0.255) TCGA-DU-7010-01 6 161027642 161027642 A G LPA Silent p.P884P 0.40 TCGA-DU-7010-01 6 26377175 26377175 C A BTN3A2 3'UTR 0.13 TCGA-DU-7010-01 6 38690922 38690922 C T DNAH8 5'UTR 0.48 TCGA-DU-7010-01 7 138863316 138863316 C G TTC26 Missense_Mutation p.A405G 0.13 tolerated(0.11) benign(0.14) TCGA-DU-7010-01 7 149474867 149474867 G A ZNF467 5'Flank 0.29 TCGA-DU-7010-01 7 15652021 15652021 C T MEOX2 Silent p.A302A 0.12 TCGA-DU-7010-01 7 6217518 6217518 C T CYTH3 Missense_Mutation p.A102T 0.18 deleterious(0.03) benign(0.236) TCGA-DU-7010-01 8 133044199 133044199 C T OC90 Silent p.P320P 0.20 TCGA-DU-7010-01 8 144641509 144641509 G T GSDMD Missense_Mutation p.G2W 0.27 deleterious(0) possibly_damaging(0.841) TCGA-DU-7010-01 8 17218649 17218649 T A MTMR7 Missense_Mutation p.S149C 0.37 tolerated(0.09) possibly_damaging(0.618) TCGA-DU-7010-01 8 39695695 39695695 C T ADAM2 Missense_Mutation p.V4I 0.13 tolerated(0.3) benign(0.001) TCGA-DU-7010-01 9 13138059 13138059 C T MPDZ Missense_Mutation p.G1366E 0.15 deleterious(0) probably_damaging(1) TCGA-DU-7010-01 9 13138080 13138080 C G MPDZ Missense_Mutation p.G1359A 0.10 deleterious(0) probably_damaging(0.994) TCGA-DU-7010-01 9 131745580 131745580 C T NUP188 Missense_Mutation p.T602I 0.12 deleterious(0.02) benign(0.211) TCGA-DU-7010-01 9 132631651 132631651 G T USP20 Missense_Mutation p.D447Y 0.25 deleterious(0) probably_damaging(0.966) TCGA-DU-7010-01 9 21304957 21304957 C A IFNA5 Missense_Mutation p.W100L 0.14 deleterious(0.01) possibly_damaging(0.897) TCGA-DU-7010-01 9 32634394 32634394 A G TAF1L Missense_Mutation p.V395A 0.15 tolerated(0.76) benign(0.001) TCGA-DU-7010-01 9 72785289 72785289 G A MAMDC2 Intron 0.18 TCGA-DU-7010-01 X 118148199 118148199 G - LONRF3 Frame_Shift_Del p.G669Dfs*21 0.17 TCGA-DU-7010-01 X 119070601 119070601 C A NKAP Missense_Mutation p.S171I 0.24 deleterious(0.03) unknown(0) TCGA-DU-7010-01 X 123525989 123525989 A G TENM1 Silent p.N1867N 0.29 TCGA-DU-7010-01 X 134709030 134709030 T A DDX26B Missense_Mutation p.V551D 0.19 deleterious(0) probably_damaging(0.969) TCGA-DU-7010-01 X 135430980 135430980 G C GPR112 Missense_Mutation p.Q1705H 0.13 deleterious(0.02) benign(0.03) TCGA-DU-7010-01 X 141290652 141290652 T A MAGEC2 Nonstop_Mutation p.*374Cext*4 0.21 TCGA-DU-7010-01 X 151935721 151935721 A G MAGEA3 Missense_Mutation p.V149A 0.43 tolerated(0.44) benign(0.093) TCGA-DU-7010-01 X 153416330 153416330 C T OPN1LW Silent p.I105I 0.20 TCGA-DU-7010-01 X 153760890 153760890 G A G6PD Silent p.R423R 0.26 TCGA-DU-7010-01 X 21627466 21627466 C A CNKSR2 Missense_Mutation p.S808Y 0.28 tolerated(0.06) probably_damaging(0.947) TCGA-DU-7010-01 X 24545692 24545692 A T PDK3 Missense_Mutation p.N251I 0.17 deleterious(0) probably_damaging(0.996) TCGA-DU-7010-01 X 34961870 34961870 C T FAM47B Missense_Mutation p.R308C 0.27 tolerated(0.32) benign(0.004) TCGA-DU-7010-01 X 37553613 37553613 G A XK Missense_Mutation p.R107K 0.19 tolerated(0.78) benign(0.023) TCGA-DU-7010-01 X 49958081 49958081 T C AKAP4 Missense_Mutation p.K428R 0.27 tolerated(0.45) benign(0.094) TCGA-DU-7010-01 X 69478345 69478345 T C P2RY4 3'UTR 0.23 TCGA-DU-7010-01 X 70345937 70345937 C A MED12 Missense_Mutation p.T825N 0.16 benign(0.038) TCGA-DU-7011-01 11 7817817 7817817 G A OR5P2 Missense_Mutation p.R225C 0.29 tolerated(0.08) benign(0.051) TCGA-DU-7011-01 13 113960856 113960856 G A LAMP1 Missense_Mutation p.A40T 0.31 tolerated(0.45) benign(0.021) TCGA-DU-7011-01 15 75975277 75975277 C T CSPG4 Missense_Mutation p.G1519R 0.21 deleterious(0) probably_damaging(0.998) TCGA-DU-7011-01 16 28513350 28513350 G C IL27 Missense_Mutation p.L137V 0.08 deleterious(0) benign(0.128) TCGA-DU-7011-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.62 deleterious(0) probably_damaging(0.997) TCGA-DU-7011-01 18 61377583 61377583 G A SERPINB11 Silent p.E52E 0.15 TCGA-DU-7011-01 19 6926465 6926465 T C EMR1 Missense_Mutation p.L692S 0.11 deleterious(0) probably_damaging(1) TCGA-DU-7011-01 1 67370972 67370972 T C WDR78 Missense_Mutation p.Q86R 0.05 tolerated(0.19) benign(0.007) TCGA-DU-7011-01 20 1585681 1585681 G A SIRPB1 Intron 0.11 TCGA-DU-7011-01 22 19197859 19197859 C A CLTCL1 Missense_Mutation p.D1076Y 0.09 deleterious(0) possibly_damaging(0.883) TCGA-DU-7011-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7011-01 2 210560053 210560053 T C MAP2 Silent p.F1053F 0.38 TCGA-DU-7011-01 2 29355042 29355042 A G CLIP4 Missense_Mutation p.N100D 0.07 deleterious(0.04) probably_damaging(0.998) TCGA-DU-7011-01 4 41984364 41984364 C A DCAF4L1 Silent p.A185A 0.10 TCGA-DU-7011-01 6 42631096 42631096 T C UBR2 Missense_Mutation p.C1213R 0.24 deleterious(0) probably_damaging(1) TCGA-DU-7011-01 7 82584494 82584494 T C PCLO Silent p.T1925T 0.44 TCGA-DU-7011-01 8 145619157 145619157 G A CPSF1 Missense_Mutation p.A1319V 0.09 tolerated(0.33) benign(0.043) TCGA-DU-7011-01 X 10180553 10180553 C T CLCN4 Missense_Mutation p.A479V 0.10 tolerated(0.52) benign(0.021) TCGA-DU-7011-01 X 24006691 24006691 T A KLHL15 Missense_Mutation p.T388S 0.10 tolerated(0.06) possibly_damaging(0.874) TCGA-DU-7011-01 X 76849194 76849194 G A ATRX Nonsense_Mutation p.R2028* 0.27 TCGA-DU-7011-01 X 76855019 76855019 T - ATRX Frame_Shift_Del p.D1940Ifs*15 0.14 TCGA-DU-7011-01 X 76939496 76939496 G A ATRX Nonsense_Mutation p.R418* 0.25 TCGA-DU-7012-01 10 74034817 74034817 G - DDIT4 Frame_Shift_Del p.L192Cfs*17 0.30 TCGA-DU-7012-01 10 89720813 89720813 A G PTEN Missense_Mutation p.K322E 0.39 deleterious(0) probably_damaging(0.997) TCGA-DU-7012-01 11 100998773 100998773 C A PGR Silent p.R343R 0.29 TCGA-DU-7012-01 11 103907873 103907873 G A DDI1 Missense_Mutation p.R108H 0.27 tolerated(0.07) benign(0.28) TCGA-DU-7012-01 11 113269791 113269791 A C ANKK1 Missense_Mutation p.H367P 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-DU-7012-01 11 5020872 5020872 T C OR51L1 Silent p.Y220Y 0.27 TCGA-DU-7012-01 11 56237331 56237331 A T OR5M3 Missense_Mutation p.S215T 0.25 deleterious(0) probably_damaging(0.951) TCGA-DU-7012-01 11 60152680 60152680 T C MS4A7 Silent p.F89F 0.28 TCGA-DU-7012-01 11 65714852 65714852 G A TSGA10IP RNA 0.22 TCGA-DU-7012-01 12 108008868 108008868 G A BTBD11 Missense_Mutation p.V644I 0.29 tolerated(0.32) possibly_damaging(0.825) TCGA-DU-7012-01 12 120875920 120875920 C G COX6A1 5'UTR 0.24 TCGA-DU-7012-01 12 43840498 43840498 G A ADAMTS20 Silent p.H699H 0.32 TCGA-DU-7012-01 13 26273415 26273415 G A ATP8A2 Silent p.A772A 0.14 TCGA-DU-7012-01 13 48612093 48612093 A G NUDT15 Intron 0.30 TCGA-DU-7012-01 14 105174336 105174336 C T INF2 Missense_Mutation p.R578C 0.28 deleterious(0.04) unknown(0) TCGA-DU-7012-01 14 38724436 38724436 G A CLEC14A Silent p.D264D 0.36 TCGA-DU-7012-01 15 62238562 62238562 C T VPS13C Missense_Mutation p.A1642T 0.15 tolerated(0.09) benign(0.391) TCGA-DU-7012-01 16 19726120 19726120 C A KNOP1 Nonsense_Mutation p.E80* 0.20 TCGA-DU-7012-01 16 28508034 28508034 G A APOBR Missense_Mutation p.V558I 0.42 tolerated(0.16) benign(0.208) TCGA-DU-7012-01 16 321439 321439 C T RGS11 Silent p.A236A 0.19 TCGA-DU-7012-01 16 57504027 57504027 C T POLR2C Silent p.P198P 0.42 TCGA-DU-7012-01 17 12655924 12655924 G C MYOCD Missense_Mutation p.S440T 0.25 tolerated(0.58) possibly_damaging(0.587) TCGA-DU-7012-01 17 36487200 36487200 C T GPR179 Missense_Mutation p.R751H 0.23 tolerated(0.06) benign(0.025) TCGA-DU-7012-01 18 29056333 29056333 G A DSG3 3'UTR 0.56 TCGA-DU-7012-01 18 77170697 77170697 T A NFATC1 Missense_Mutation p.V128E 0.31 tolerated(0.42) benign(0.013) TCGA-DU-7012-01 19 13565980 13565980 C T CACNA1A Missense_Mutation p.V114I 0.28 benign(0.208) TCGA-DU-7012-01 19 19655450 19655450 G A CILP2 Missense_Mutation p.R699H 0.30 tolerated(0.54) benign(0.003) TCGA-DU-7012-01 19 31048152 31048152 G A ZNF536 3'UTR 0.28 TCGA-DU-7012-01 19 35862414 35862414 C T GPR42 Silent p.D51D 0.41 TCGA-DU-7012-01 19 41096328 41096328 G A SHKBP1 Missense_Mutation p.A590T 0.25 tolerated(0.34) benign(0.004) TCGA-DU-7012-01 19 47935602 47935602 G A SLC8A2 Silent p.F737F 0.25 TCGA-DU-7012-01 19 48800756 48800756 G A CCDC114 Missense_Mutation p.A497V 0.18 deleterious(0.01) benign(0.336) TCGA-DU-7012-01 19 51499377 51499377 C T KLK8 Missense_Mutation p.V286I 0.23 deleterious(0.02) benign(0.185) TCGA-DU-7012-01 19 57327274 57327274 T C PEG3 Missense_Mutation p.S846G 0.32 tolerated(0.42) benign(0.003) TCGA-DU-7012-01 19 8191627 8191627 G A FBN3 Missense_Mutation p.R796W 0.27 deleterious(0.01) probably_damaging(0.978) TCGA-DU-7012-01 1 22201401 22201401 G A HSPG2 Missense_Mutation p.R1133C 0.33 probably_damaging(0.996) TCGA-DU-7012-01 1 26387823 26387823 C T TRIM63 Missense_Mutation p.R112Q 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-DU-7012-01 1 27224101 27224101 C T GPATCH3 Silent p.L189L 0.25 TCGA-DU-7012-01 20 31656779 31656779 C T BPIFB3 Silent p.S383S 0.30 TCGA-DU-7012-01 20 43355905 43355905 G C WISP2 Missense_Mutation p.C237S 0.24 deleterious(0) probably_damaging(0.998) TCGA-DU-7012-01 20 47989555 47989555 C T KCNB1 Missense_Mutation p.G848R 0.23 tolerated_low_confidence(0.24) benign(0.002) TCGA-DU-7012-01 20 61951525 61951525 G A COL20A1 Silent p.R1017R 0.33 TCGA-DU-7012-01 22 32487648 32487648 C T SLC5A1 Silent p.S393S 0.23 TCGA-DU-7012-01 22 42221755 42221755 C A CCDC134 Silent p.R206R 0.25 TCGA-DU-7012-01 2 114355105 114355105 G A WASH2P RNA 0.13 TCGA-DU-7012-01 3 100057936 100057936 C T NIT2 Missense_Mutation p.R5C 0.25 deleterious(0) probably_damaging(0.985) TCGA-DU-7012-01 3 11600065 11600065 C T VGLL4 Missense_Mutation p.V286I 0.23 tolerated_low_confidence(0.06) unknown(0) TCGA-DU-7012-01 3 196387770 196387770 C T NRROS Missense_Mutation p.P419L 0.25 tolerated(0.13) benign(0.17) TCGA-DU-7012-01 3 46755847 46755847 G A PRSS50 Silent p.N205N 0.45 TCGA-DU-7012-01 4 111781769 111781769 A G MIR297 RNA 0.24 TCGA-DU-7012-01 4 25351255 25351255 C T ZCCHC4 Nonsense_Mutation p.Q301* 0.28 TCGA-DU-7012-01 4 6043922 6043922 G A JAKMIP1 Silent p.A687A 0.17 TCGA-DU-7012-01 4 74352724 74352724 G A AFM Missense_Mutation p.A175T 0.22 tolerated(0.05) benign(0.221) TCGA-DU-7012-01 5 140744613 140744613 C T PCDHGA5 Missense_Mutation p.A239V 0.24 deleterious_low_confidence(0.02) benign(0.023) TCGA-DU-7012-01 5 150921911 150921911 G A FAT2 Missense_Mutation p.A2926V 0.23 benign(0.006) TCGA-DU-7012-01 6 74063752 74063752 G A DPPA5 Missense_Mutation p.P39L 0.31 deleterious(0.01) benign(0.138) TCGA-DU-7012-01 7 100486857 100486857 C T UFSP1 Silent p.R12R 0.21 TCGA-DU-7012-01 7 100683975 100683975 C T MUC17 Missense_Mutation p.T3093I 0.21 probably_damaging(0.986) TCGA-DU-7012-01 7 117267621 117267621 G A CFTR Missense_Mutation p.E1172K 0.16 deleterious(0) probably_damaging(0.998) TCGA-DU-7012-01 7 141708343 141708343 G A MGAM Silent p.G55G 0.13 TCGA-DU-7012-01 7 20197969 20197969 C A MACC1 Missense_Mutation p.G672V 0.34 deleterious(0) probably_damaging(0.92) TCGA-DU-7012-01 7 55221723 55221723 A G EGFR Missense_Mutation p.D256G 0.39 deleterious(0.02) probably_damaging(0.995) TCGA-DU-7012-01 7 73280003 73280003 C T WBSCR28 Silent p.L200L 0.19 TCGA-DU-7012-01 7 87104712 87104712 C G ABCB4 Missense_Mutation p.G24R 0.18 tolerated(0.19) benign(0.003) TCGA-DU-7012-01 7 92838183 92838183 G T HEPACAM2 Missense_Mutation p.P241H 0.18 deleterious(0) probably_damaging(1) TCGA-DU-7012-01 8 33318925 33318925 C T FUT10 Missense_Mutation p.V16I 0.30 tolerated(1) benign(0.007) TCGA-DU-7012-01 8 82667660 82667660 G A CHMP4C Missense_Mutation p.A142T 0.20 deleterious(0.02) possibly_damaging(0.903) TCGA-DU-7012-01 9 1056823 1056823 C T DMRT2 Silent p.T412T 0.49 TCGA-DU-7012-01 9 131118036 131118036 C T SLC27A4 Missense_Mutation p.P579S 0.16 deleterious(0) possibly_damaging(0.682) TCGA-DU-7012-01 9 140446796 140446796 C - MRPL41 Frame_Shift_Del p.A89Rfs*? 0.15 TCGA-DU-7012-01 X 102864217 102864217 G A TCEAL3 Silent p.E75E 0.22 TCGA-DU-7012-01 X 135426893 135426893 C T GPR112 Missense_Mutation p.T343M 0.16 deleterious(0) probably_damaging(0.92) TCGA-DU-7012-01 X 152226634 152226634 C T PNMA3 Missense_Mutation p.R408W 0.25 tolerated(0.06) benign(0.197) TCGA-DU-7012-01 X 153588484 153588484 C T FLNA Missense_Mutation p.G1227R 0.15 deleterious(0) probably_damaging(0.984) TCGA-DU-7012-01 X 155239557 155239557 C T IL9R Missense_Mutation p.P350L 0.36 tolerated(0.13) benign(0.311) TCGA-DU-7012-01 X 48650342 48650342 C T GATA1 Silent p.Y104Y 0.19 TCGA-DU-7012-01 X 53654434 53654434 C T HUWE1 Silent p.P472P 0.20 TCGA-DU-7012-01 X 70148064 70148064 C T SLC7A3 Missense_Mutation p.E251K 0.13 tolerated(0.23) benign(0.032) TCGA-DU-7013-01 10 96612622 96612622 G A CYP2C19 Missense_Mutation p.G475E 0.83 deleterious(0.01) possibly_damaging(0.858) TCGA-DU-7013-01 11 119983072 119983072 G T TRIM29 3'UTR 0.38 TCGA-DU-7013-01 11 1215764 1215764 G A MUC5AC RNA 0.46 TCGA-DU-7013-01 11 56468437 56468437 G A OR9G1 Missense_Mutation p.G192S 0.23 tolerated(0.56) benign(0.012) TCGA-DU-7013-01 12 117723945 117723945 C T NOS1 Silent p.S418S 0.38 TCGA-DU-7013-01 12 52842747 52842747 T C KRT6B Missense_Mutation p.E361G 0.38 deleterious(0.05) possibly_damaging(0.842) TCGA-DU-7013-01 13 20635254 20635254 T C ZMYM2 Missense_Mutation p.I934T 0.62 deleterious(0.01) benign(0.001) TCGA-DU-7013-01 13 25840284 25840284 C T MTMR6 Missense_Mutation p.A149T 0.11 tolerated(0.05) benign(0.015) TCGA-DU-7013-01 13 36006413 36006413 C A NBEA Missense_Mutation p.H2063N 0.31 deleterious(0.05) benign(0.281) TCGA-DU-7013-01 14 23855275 23855275 G A MYH6 Silent p.I1675I 0.40 TCGA-DU-7013-01 14 47426601 47426601 C T MDGA2 Missense_Mutation p.G689R 0.35 tolerated(0.09) probably_damaging(0.976) TCGA-DU-7013-01 14 65258514 65258514 G A SPTB Silent p.L909L 0.47 TCGA-DU-7013-01 16 2230409 2230409 C T CASKIN1 Missense_Mutation p.S987N 0.46 possibly_damaging(0.811) TCGA-DU-7013-01 16 2499351 2499351 C A CCNF Missense_Mutation p.H429Q 0.35 tolerated(0.06) possibly_damaging(0.689) TCGA-DU-7013-01 16 74419314 74419314 G T NPIPB15 Missense_Mutation p.W108C 0.10 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-DU-7013-01 16 823215 823215 A G MSLNL Missense_Mutation p.C685R 0.41 benign(0) TCGA-DU-7013-01 17 36353621 36353621 C G RP11-1407O15.2 Missense_Mutation p.D414H 0.42 TCGA-DU-7013-01 17 6329143 6329143 C T AIPL1 Silent p.V264V 0.81 TCGA-DU-7013-01 17 7578203 7578203 C T TP53 Missense_Mutation p.V216M 0.93 deleterious(0) probably_damaging(1) TCGA-DU-7013-01 17 80195561 80195561 C T SLC16A3 Silent p.N305N 0.31 TCGA-DU-7013-01 19 1090943 1090943 C T POLR2E Silent p.L131L 0.27 TCGA-DU-7013-01 19 56244772 56244772 G A NLRP9 Missense_Mutation p.A142V 0.39 tolerated(0.21) benign(0.037) TCGA-DU-7013-01 1 158576444 158576444 C A OR10Z1 Nonsense_Mutation p.C72* 0.36 TCGA-DU-7013-01 1 210856965 210856965 C G KCNH1 Missense_Mutation p.K876N 0.31 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-DU-7013-01 20 42979326 42979326 A G R3HDML Missense_Mutation p.Y219C 0.45 deleterious(0) probably_damaging(1) TCGA-DU-7013-01 22 23047176 23047176 C T IGLV3-22 Missense_Mutation p.R72W 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-DU-7013-01 2 109527457 109527457 C T EDAR Missense_Mutation p.A201T 0.41 tolerated(0.1) probably_damaging(0.993) TCGA-DU-7013-01 2 178682596 178682596 G A PDE11A Nonsense_Mutation p.R545* 0.69 TCGA-DU-7013-01 2 1843079 1843079 G A MYT1L Silent p.S972S 0.43 TCGA-DU-7013-01 2 32476671 32476671 C T NLRC4 Splice_Site p.X88_splice 0.45 TCGA-DU-7013-01 3 14861759 14861759 G C FGD5 Missense_Mutation p.C394S 0.45 tolerated_low_confidence(0.94) benign(0.016) TCGA-DU-7013-01 3 186038256 186038257 - T DGKG 5'UTR 0.35 TCGA-DU-7013-01 3 52428569 52428569 G A DNAH1 Missense_Mutation p.R3572Q 0.36 benign(0.041) TCGA-DU-7013-01 4 100205899 100205899 C T ADH1A Silent p.P107P 0.37 TCGA-DU-7013-01 4 118975505 118975505 G A NDST3 Missense_Mutation p.R147Q 0.43 deleterious(0.01) benign(0.007) TCGA-DU-7013-01 4 155507658 155507658 C T FGA Missense_Mutation p.R308Q 0.45 tolerated_low_confidence(0.41) benign(0) TCGA-DU-7013-01 4 68925146 68925146 G - TMPRSS11F Frame_Shift_Del p.I353* 0.24 TCGA-DU-7013-01 4 80327904 80327904 A G GK2 Missense_Mutation p.M484T 0.45 tolerated(0.69) benign(0.001) TCGA-DU-7013-01 5 37364077 37364077 C G NUP155 Missense_Mutation p.C102S 0.43 tolerated(0.16) benign(0.064) TCGA-DU-7013-01 5 665358 665358 C A TPPP Silent p.T173T 0.08 TCGA-DU-7013-01 6 132910545 132910545 C T TAAR5 Missense_Mutation p.R94H 0.35 deleterious(0.02) benign(0.06) TCGA-DU-7013-01 6 28294587 28294587 C G ZSCAN31 Missense_Mutation p.E193Q 0.35 tolerated(0.29) benign(0.305) TCGA-DU-7013-01 6 42162502 42162502 C T GUCA1B Silent p.A19A 0.43 TCGA-DU-7013-01 6 52129268 52129268 G A MCM3 3'UTR 0.53 TCGA-DU-7013-01 7 139030301 139030301 A C LUC7L2 Missense_Mutation p.T65P 0.47 deleterious_low_confidence(0.01) benign(0.192) TCGA-DU-7013-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.96 deleterious(0) possibly_damaging(0.75) TCGA-DU-7013-01 8 57079207 57079207 G A PLAG1 Silent p.G366G 0.57 TCGA-DU-7013-01 9 120475558 120475558 C A TLR4 Silent p.G384G 0.39 TCGA-DU-7013-01 9 135202372 135202372 C T SETX Missense_Mutation p.R1538Q 0.45 tolerated(0.56) benign(0.001) TCGA-DU-7013-01 9 135944525 135944525 G A CEL Missense_Mutation p.E392K 0.39 tolerated(0.4) benign(0.004) TCGA-DU-7013-01 X 78216946 78216946 C A P2RY10 Nonsense_Mutation p.S310* 0.89 TCGA-DU-7015-01 10 27459597 27459597 A G MASTL Missense_Mutation p.D570G 0.05 deleterious(0.01) probably_damaging(0.952) TCGA-DU-7015-01 10 72541755 72541755 G A TBATA Missense_Mutation p.R27C 0.41 tolerated_low_confidence(0.13) benign(0.001) TCGA-DU-7015-01 11 119063944 119063944 C T CCDC153 Missense_Mutation p.R89H 0.06 tolerated(0.05) probably_damaging(0.96) TCGA-DU-7015-01 11 22363146 22363146 C T SLC17A6 Silent p.P53P 0.10 TCGA-DU-7015-01 11 45671624 45671624 A G CHST1 Missense_Mutation p.S284P 0.10 deleterious(0.05) benign(0.014) TCGA-DU-7015-01 11 5510502 5510502 G C OR52D1 Missense_Mutation p.R189P 0.47 deleterious(0) possibly_damaging(0.87) TCGA-DU-7015-01 11 58275443 58275443 T C OR5B21 Missense_Mutation p.I46V 0.09 deleterious_low_confidence(0.02) benign(0.001) TCGA-DU-7015-01 11 608555 608555 G A PHRF1 Silent p.A1032A 0.30 TCGA-DU-7015-01 12 102142925 102142925 A G GNPTAB Missense_Mutation p.L1216P 0.26 deleterious(0) probably_damaging(0.999) TCGA-DU-7015-01 14 106926204 106926204 T A IGHV3-43 Missense_Mutation p.Y113F 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.632) TCGA-DU-7015-01 14 36987039 36987039 G A NKX2-1 Missense_Mutation p.S217L 0.14 deleterious(0) possibly_damaging(0.794) TCGA-DU-7015-01 17 10351193 10351193 G T MYH4 Missense_Mutation p.A1636D 0.38 deleterious(0) benign(0.277) TCGA-DU-7015-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.77 deleterious(0) probably_damaging(1) TCGA-DU-7015-01 18 64202239 64202239 A C CDH19 Missense_Mutation p.I440M 0.05 deleterious(0) possibly_damaging(0.766) TCGA-DU-7015-01 19 34900075 34900075 A G RP11-618P17.4 Missense_Mutation p.N145D 0.35 tolerated_low_confidence(0.14) benign(0.03) TCGA-DU-7015-01 19 6707865 6707865 C T C3 Missense_Mutation p.D641N 0.33 deleterious(0) probably_damaging(0.998) TCGA-DU-7015-01 1 186105910 186105910 C T HMCN1 Missense_Mutation p.R4475C 0.55 probably_damaging(0.999) TCGA-DU-7015-01 1 203807189 203807189 A G ZC3H11A Missense_Mutation p.K324E 0.07 deleterious(0) possibly_damaging(0.691) TCGA-DU-7015-01 1 226349374 226349374 G A ACBD3 Nonsense_Mutation p.R196* 0.54 TCGA-DU-7015-01 20 49508437 49508437 A G ADNP Silent p.T938T 0.07 TCGA-DU-7015-01 2 148716409 148716409 G A ORC4 Silent p.L84L 0.46 TCGA-DU-7015-01 2 158443697 158443697 A G ACVR1C Splice_Site p.X102_splice 0.07 TCGA-DU-7015-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7015-01 3 137882319 137882319 A C DBR1 Missense_Mutation p.H271Q 0.08 tolerated(0.1) benign(0.356) TCGA-DU-7015-01 3 182987919 182987919 G A B3GNT5 Nonsense_Mutation p.W111* 0.29 TCGA-DU-7015-01 5 153026583 153026583 G A GRIA1 Missense_Mutation p.V116I 0.10 tolerated(0.55) probably_damaging(0.993) TCGA-DU-7015-01 5 40765101 40765101 G A PRKAA1 Missense_Mutation p.A369V 0.09 tolerated(0.1) probably_damaging(0.999) TCGA-DU-7015-01 6 52013825 52013825 C T MIR133B RNA 0.19 TCGA-DU-7015-01 6 75834890 75834890 T C COL12A1 Missense_Mutation p.Q2187R 0.42 probably_damaging(0.994) TCGA-DU-7015-01 8 110655043 110655043 G A SYBU Missense_Mutation p.P48L 0.06 tolerated(0.05) probably_damaging(0.999) TCGA-DU-7015-01 8 110655044 110655044 G A SYBU Missense_Mutation p.P48S 0.06 deleterious(0.04) probably_damaging(0.999) TCGA-DU-7015-01 8 113277704 113277704 A G CSMD3 Silent p.N3208N 0.07 TCGA-DU-7015-01 8 133961128 133961128 A T TG Missense_Mutation p.T1781S 0.12 tolerated(0.51) benign(0.218) TCGA-DU-7015-01 9 138378218 138378218 C T PPP1R26 Missense_Mutation p.A621V 0.08 deleterious(0.04) benign(0.003) TCGA-DU-7015-01 X 10085416 10085416 G T WWC3 Missense_Mutation p.Q439H 0.26 tolerated(0.1) benign(0.029) TCGA-DU-7015-01 X 68836453 68836453 C T EDA Missense_Mutation p.P101S 0.74 tolerated_low_confidence(0.28) unknown(0) TCGA-DU-7015-01 X 76939957 76939957 T - ATRX Frame_Shift_Del p.Y264Ffs*24 0.42 TCGA-DU-7018-01 10 129690850 129690850 C T CLRN3 Missense_Mutation p.G67R 0.05 deleterious(0) probably_damaging(1) TCGA-DU-7018-01 10 71164757 71164757 G A TACR2 Missense_Mutation p.T341M 0.04 deleterious(0.05) benign(0.132) TCGA-DU-7018-01 11 47444498 47444498 C T PSMC3 Missense_Mutation p.M206I 0.08 tolerated(0.34) benign(0.003) TCGA-DU-7018-01 11 65393163 65393163 T G PCNXL3 Missense_Mutation p.I1059S 0.38 deleterious(0.01) possibly_damaging(0.76) TCGA-DU-7018-01 11 94113592 94113592 C A GPR83 Missense_Mutation p.W332L 0.31 deleterious(0) probably_damaging(0.982) TCGA-DU-7018-01 12 53291197 53291197 G C KRT8 3'UTR 0.07 TCGA-DU-7018-01 12 95604123 95604123 G A FGD6 Missense_Mutation p.P313S 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-7018-01 14 19553818 19553818 C T POTEG Silent p.H134H 0.08 TCGA-DU-7018-01 15 57555366 57555369 AAAG - TCF12 Frame_Shift_Del p.E548Rfs*14 0.43 TCGA-DU-7018-01 15 85681058 85681058 A G PDE8A Missense_Mutation p.H805R 0.18 deleterious(0) probably_damaging(0.912) TCGA-DU-7018-01 16 1962181 1962181 C T HS3ST6 Missense_Mutation p.G116R 0.33 deleterious(0.03) possibly_damaging(0.58) TCGA-DU-7018-01 17 43194022 43194022 G T PLCD3 Missense_Mutation p.P464T 0.46 tolerated(0.09) possibly_damaging(0.453) TCGA-DU-7018-01 17 56247641 56247641 G A OR4D2 Missense_Mutation p.V209I 0.19 tolerated(0.98) benign(0.004) TCGA-DU-7018-01 19 11144121 11144121 C G SMARCA4 Missense_Mutation p.F1234L 0.26 benign(0.217) TCGA-DU-7018-01 19 23543197 23543197 C T ZNF91 Missense_Mutation p.A862T 0.11 tolerated(0.22) probably_damaging(0.95) TCGA-DU-7018-01 19 42791372 42791373 AG - CIC Frame_Shift_Del p.S146* 0.41 TCGA-DU-7018-01 19 58724513 58724513 T G ZNF274 3'UTR 0.35 TCGA-DU-7018-01 1 179320474 179320474 T C SOAT1 Silent p.N491N 0.09 TCGA-DU-7018-01 1 29630539 29630539 C A PTPRU Silent p.G893G 0.09 TCGA-DU-7018-01 1 46120875 46120875 T C GPBP1L1 Silent p.L59L 0.19 TCGA-DU-7018-01 20 33722668 33722668 G A EDEM2 Missense_Mutation p.T192M 0.13 deleterious(0) probably_damaging(0.999) TCGA-DU-7018-01 22 39387537 39387537 C T APOBEC3B Silent p.F308F 0.15 TCGA-DU-7018-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7018-01 2 211515094 211515094 G A CPS1 Missense_Mutation p.A1144T 0.11 deleterious(0) probably_damaging(0.999) TCGA-DU-7018-01 2 217279430 217279430 G A SMARCAL1 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DU-7018-01 2 218954072 218954072 C T RUFY4 Missense_Mutation p.R554W 0.16 deleterious(0) probably_damaging(0.994) TCGA-DU-7018-01 2 27666916 27666916 G A KRTCAP3 Nonsense_Mutation p.W239* 0.16 TCGA-DU-7018-01 2 88393054 88393054 C G SMYD1 Silent p.S226S 0.17 TCGA-DU-7018-01 2 96993753 96993753 C T ITPRIPL1 Missense_Mutation p.L470F 0.16 tolerated(0.34) probably_damaging(0.999) TCGA-DU-7018-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.12 deleterious(0.04) probably_damaging(0.96) TCGA-DU-7018-01 5 121786734 121786734 G A SNCAIP Missense_Mutation p.R731H 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-DU-7018-01 5 140801469 140801469 C T PCDHGA11 Silent p.G225G 0.07 TCGA-DU-7018-01 5 150073655 150073655 C T RBM22 Silent p.L298L 0.03 TCGA-DU-7018-01 5 173317440 173317440 A T CPEB4 Missense_Mutation p.H235L 0.15 tolerated_low_confidence(0.32) probably_damaging(0.933) TCGA-DU-7018-01 5 179393937 179393937 C A RNF130 Missense_Mutation p.R340I 0.05 tolerated(0.41) possibly_damaging(0.687) TCGA-DU-7018-01 5 39381673 39381673 C T DAB2 Missense_Mutation p.V463I 0.17 tolerated(0.55) benign(0) TCGA-DU-7018-01 5 63509839 63509840 AT - RNF180 Frame_Shift_Del p.H229Qfs*8 0.14 TCGA-DU-7018-01 6 28228259 28228259 A G NKAPL Silent p.A370A 0.45 TCGA-DU-7018-01 7 113517991 113517991 A G PPP1R3A Silent p.T1052T 0.44 TCGA-DU-7018-01 8 100589785 100589785 T C VPS13B Missense_Mutation p.V1740A 0.10 tolerated(0.07) possibly_damaging(0.857) TCGA-DU-7018-01 8 2021511 2021511 G T MYOM2 Missense_Mutation p.G351C 0.22 deleterious(0) probably_damaging(0.988) TCGA-DU-7018-01 8 55049886 55049889 GGTC - MRPL15 Frame_Shift_Del p.G108Vfs*10 0.35 TCGA-DU-7018-01 9 139392000 139392000 G A NOTCH1 Missense_Mutation p.P2064L 0.13 deleterious(0) possibly_damaging(0.564) TCGA-DU-7018-01 X 103499230 103499230 C A ESX1 Missense_Mutation p.M37I 0.11 tolerated_low_confidence(1) benign(0.107) TCGA-DU-7018-01 X 128914084 128914084 G A SASH3 Missense_Mutation p.R4H 0.28 deleterious(0) possibly_damaging(0.877) TCGA-DU-7018-01 X 146342130 146342130 C A MIR509-1 RNA 0.13 TCGA-DU-7018-01 X 48791845 48791845 G A OTUD5 Silent p.D322D 0.09 TCGA-DU-7019-01 11 118239407 118239407 C T UBE4A Silent p.F61F 0.33 TCGA-DU-7019-01 12 124335566 124335566 C T DNAH10 Silent p.P1960P 0.26 TCGA-DU-7019-01 12 53876125 53876127 TCC - MAP3K12 In_Frame_Del p.E756del 0.17 TCGA-DU-7019-01 13 76055900 76055900 C T TBC1D4 Missense_Mutation p.E2K 0.50 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-DU-7019-01 16 25251836 25251836 G A ZKSCAN2 Silent p.A735A 0.33 TCGA-DU-7019-01 17 3181606 3181606 G A OR3A2 Silent p.L208L 0.37 TCGA-DU-7019-01 17 3458099 3458100 CT - TRPV3 Frame_Shift_Del p.R15Sfs*36 0.15 TCGA-DU-7019-01 17 48687284 48687284 A C CACNA1G Missense_Mutation p.S1583R 0.07 tolerated(0.45) benign(0.028) TCGA-DU-7019-01 17 73177151 73177151 C G SUMO2 Splice_Site p.X51_splice 0.26 TCGA-DU-7019-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.73 tolerated(0.11) benign(0.308) TCGA-DU-7019-01 17 7592042 7592042 T C WRAP53 Missense_Mutation p.S26P 0.26 deleterious_low_confidence(0.05) benign(0.007) TCGA-DU-7019-01 19 11106926 11106928 AGA - SMARCA4 In_Frame_Del p.K546del 0.33 TCGA-DU-7019-01 19 1231248 1231248 G A C19orf26 Missense_Mutation p.R336W 0.35 deleterious(0) probably_damaging(1) TCGA-DU-7019-01 19 16860740 16860740 C T NWD1 Silent p.F429F 0.11 TCGA-DU-7019-01 19 45153147 45153147 G A PVR Missense_Mutation p.R165H 0.13 tolerated(0.05) benign(0.315) TCGA-DU-7019-01 19 47575123 47575123 G A ZC3H4 Silent p.P686P 0.33 TCGA-DU-7019-01 19 55106273 55106273 C T LILRA1 Missense_Mutation p.R72W 0.37 deleterious(0.05) benign(0.011) TCGA-DU-7019-01 1 16378309 16378309 C T CLCNKB Silent p.L468L 0.36 TCGA-DU-7019-01 1 186302356 186302358 GAG - TPR In_Frame_Del p.P1784del 0.24 TCGA-DU-7019-01 1 216595818 216595818 T C USH2A 5'UTR 0.25 TCGA-DU-7019-01 1 32256502 32256502 C T SPOCD1 Missense_Mutation p.R1118H 0.36 tolerated(0.17) benign(0.001) TCGA-DU-7019-01 20 19677486 19677486 G A SLC24A3 Missense_Mutation p.G513R 0.32 deleterious(0) probably_damaging(1) TCGA-DU-7019-01 20 49626525 49626527 GAA - KCNG1 In_Frame_Del p.F117del 0.25 TCGA-DU-7019-01 21 31859568 31859568 C T KRTAP19-2 Missense_Mutation p.G34R 0.05 deleterious_low_confidence(0.03) unknown(0) TCGA-DU-7019-01 21 39671533 39671533 C T KCNJ15 Missense_Mutation p.A117V 0.08 deleterious(0) probably_damaging(0.999) TCGA-DU-7019-01 22 24175836 24175837 CT - SMARCB1 Frame_Shift_Del p.L356Dfs*4 0.09 TCGA-DU-7019-01 22 29709887 29709887 G A RASL10A Silent p.Y103Y 0.10 TCGA-DU-7019-01 22 37407129 37407129 T G TST Missense_Mutation p.E278A 0.05 deleterious(0) probably_damaging(0.996) TCGA-DU-7019-01 22 38270462 38270462 C T EIF3L Silent p.R279R 0.46 TCGA-DU-7019-01 2 152544001 152544004 CAAT - NEB Frame_Shift_Del p.I856Efs*15 0.12 TCGA-DU-7019-01 2 196765182 196765182 A G DNAH7 Missense_Mutation p.Y1458H 0.06 deleterious(0) probably_damaging(1) TCGA-DU-7019-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7019-01 3 10146220 10146220 C T FANCD2OS Missense_Mutation p.R80H 0.09 deleterious(0.02) benign(0.141) TCGA-DU-7019-01 3 38598771 38598771 G A SCN5A Missense_Mutation p.T1417I 0.17 deleterious(0) probably_damaging(0.999) TCGA-DU-7019-01 4 148594115 148594115 G T PRMT10 Silent p.P246P 0.25 TCGA-DU-7019-01 4 57182125 57182125 G A KIAA1211 Silent p.S819S 0.26 TCGA-DU-7019-01 5 173317571 173317574 AACA - CPEB4 Frame_Shift_Del p.K280Pfs*41 0.17 TCGA-DU-7019-01 6 57185254 57185254 G T PRIM2 Splice_Site p.X52_splice 0.25 TCGA-DU-7019-01 7 18067044 18067044 G A PRPS1L1 Missense_Mutation p.A121V 0.38 tolerated(0.35) benign(0.108) TCGA-DU-7019-01 7 94059754 94059754 C A COL1A2 3'UTR 0.11 TCGA-DU-7019-01 8 39634592 39634592 T C ADAM2 Missense_Mutation p.N327S 0.07 tolerated(0.57) benign(0.026) TCGA-DU-7019-01 8 82752142 82752144 CTT - SNX16 In_Frame_Del p.R26del 0.25 TCGA-DU-7019-01 9 131671134 131671134 A G LRRC8A Missense_Mutation p.D564G 0.28 deleterious(0.02) possibly_damaging(0.87) TCGA-DU-7019-01 9 136216484 136216484 C G RPL7A Missense_Mutation p.A68G 0.06 deleterious(0.03) benign(0.078) TCGA-DU-7019-01 X 101818628 101818630 ATT - NXF4 RNA 0.48 TCGA-DU-7019-01 X 21534627 21534627 G T CNKSR2 Missense_Mutation p.V279L 0.69 deleterious(0) possibly_damaging(0.678) TCGA-DU-7019-01 X 3239837 3239837 T C MXRA5 Missense_Mutation p.T1297A 0.06 tolerated(0.07) possibly_damaging(0.452) TCGA-DU-7290-01 10 43597996 43597996 C T RET Missense_Mutation p.P182S 0.53 tolerated(0.06) benign(0.067) TCGA-DU-7290-01 10 89692830 89692830 G A PTEN Missense_Mutation p.C105Y 0.49 deleterious(0) probably_damaging(0.999) TCGA-DU-7290-01 11 118074285 118074285 C G AMICA1 Silent p.G210G 0.14 TCGA-DU-7290-01 11 65635447 65635447 G A EFEMP2 Missense_Mutation p.S352L 0.06 deleterious(0) possibly_damaging(0.803) TCGA-DU-7290-01 12 103984727 103984727 C T STAB2 Missense_Mutation p.S45F 0.25 deleterious(0) possibly_damaging(0.806) TCGA-DU-7290-01 13 48919319 48919320 TT - RB1 Frame_Shift_Del p.F162Qfs*8 0.39 TCGA-DU-7290-01 13 53603144 53603144 G A OLFM4 Missense_Mutation p.R58H 0.06 tolerated_low_confidence(0.12) unknown(0) TCGA-DU-7290-01 17 10214497 10214497 G T MYH13 Missense_Mutation p.L1527I 0.25 tolerated(1) benign(0.061) TCGA-DU-7290-01 17 1585131 1585131 C T PRPF8 Silent p.P212P 0.05 TCGA-DU-7290-01 17 36233862 36233862 G A YWHAEP7 RNA 0.12 TCGA-DU-7290-01 17 7611424 7611424 C T EFNB3 Missense_Mutation p.R91C 0.08 deleterious(0.03) probably_damaging(0.936) TCGA-DU-7290-01 18 10691245 10691245 C T PIEZO2 Missense_Mutation p.V2330I 0.29 tolerated(0.22) benign(0.034) TCGA-DU-7290-01 18 14106371 14106371 C T ZNF519 Silent p.E56E 0.32 TCGA-DU-7290-01 19 10401990 10401990 C G ICAM5 Missense_Mutation p.Q109E 0.33 tolerated(0.65) benign(0.089) TCGA-DU-7290-01 19 21720782 21720782 C A ZNF429 Missense_Mutation p.H643N 0.11 deleterious(0) benign(0.108) TCGA-DU-7290-01 19 42190934 42190934 C T CEACAM7 Missense_Mutation p.A95T 0.31 deleterious(0.03) possibly_damaging(0.572) TCGA-DU-7290-01 19 43766011 43766011 C T PSG9 Splice_Site p.X237_splice 0.34 TCGA-DU-7290-01 1 212553255 212553255 A G TMEM206 Missense_Mutation p.F268S 0.27 deleterious(0) benign(0.407) TCGA-DU-7290-01 1 38274870 38274870 G A C1orf122 3'UTR 0.22 TCGA-DU-7290-01 1 67142747 67142747 C T SGIP1 Missense_Mutation p.S236L 0.26 deleterious_low_confidence(0.02) probably_damaging(0.945) TCGA-DU-7290-01 2 179637874 179637874 G A TTN Missense_Mutation p.A2606V 0.25 TCGA-DU-7290-01 3 161063918 161063918 G T SPTSSB Nonsense_Mutation p.S65* 0.07 TCGA-DU-7290-01 3 48698353 48698353 C T CELSR3 Missense_Mutation p.R572Q 0.21 tolerated(0.25) benign(0.003) TCGA-DU-7290-01 4 4214703 4214703 G A OTOP1 Silent p.T144T 0.33 TCGA-DU-7290-01 5 118485663 118485663 A T DMXL1 Missense_Mutation p.S1381C 0.28 deleterious(0) probably_damaging(0.976) TCGA-DU-7290-01 5 127800434 127800434 C T FBN2 Missense_Mutation p.R270H 0.35 tolerated(0.49) possibly_damaging(0.84) TCGA-DU-7290-01 5 15936897 15936897 T A FBXL7 Missense_Mutation p.C360S 0.31 deleterious(0) probably_damaging(0.987) TCGA-DU-7290-01 6 152783987 152783987 T C SYNE1 Silent p.E712E 0.19 TCGA-DU-7290-01 6 157454205 157454205 T A ARID1B Nonsense_Mutation p.Y805* 0.42 TCGA-DU-7290-01 6 26124693 26124693 G A HIST1H2AC Missense_Mutation p.R78H 0.36 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DU-7290-01 6 29054524 29054524 G A OR2B3 Missense_Mutation p.R168C 0.30 deleterious(0.02) possibly_damaging(0.893) TCGA-DU-7290-01 6 47846864 47846864 G A PTCHD4 Silent p.I572I 0.32 TCGA-DU-7290-01 7 121684517 121684517 A G PTPRZ1 Missense_Mutation p.I1993M 0.27 deleterious(0) benign(0.24) TCGA-DU-7290-01 7 55750333 55750333 G A RNU6-389P 5'Flank 0.42 TCGA-DU-7290-01 8 97157718 97157718 C G GDF6 Missense_Mutation p.K147N 0.30 deleterious(0.01) benign(0.3) TCGA-DU-7290-01 9 125330525 125330525 C T OR1L8 Missense_Mutation p.V78I 0.34 tolerated(0.65) benign(0.002) TCGA-DU-7290-01 9 4118007 4118007 C T GLIS3 Missense_Mutation p.G491R 0.09 deleterious(0.01) probably_damaging(1) TCGA-DU-7290-01 9 71098810 71098810 C T PGM5 Missense_Mutation p.T442M 0.18 deleterious(0.03) benign(0.026) TCGA-DU-7290-01 X 105011344 105011344 T G IL1RAPL2 Missense_Mutation p.I584R 0.29 deleterious_low_confidence(0) benign(0.163) TCGA-DU-7290-01 X 135862897 135862897 T A ARHGEF6 Missense_Mutation p.M49L 0.29 tolerated_low_confidence(1) benign(0) TCGA-DU-7290-01 X 3229518 3229518 C T MXRA5 Silent p.P2242P 0.22 TCGA-DU-7290-01 X 70351408 70351408 C A MED12 Missense_Mutation p.D1352E 0.10 benign(0.147) TCGA-DU-7292-01 10 75204477 75204477 C G PPP3CB Intron 0.56 TCGA-DU-7292-01 11 10622600 10622600 G A MRVI1 Missense_Mutation p.R628C 0.34 deleterious(0) probably_damaging(1) TCGA-DU-7292-01 11 56020051 56020051 G A OR5T3 Missense_Mutation p.G126R 0.35 deleterious(0) probably_damaging(0.941) TCGA-DU-7292-01 11 57076923 57076923 C T TNKS1BP1 Missense_Mutation p.G1088S 0.26 tolerated(0.39) benign(0.049) TCGA-DU-7292-01 11 71725528 71725528 C T NUMA1 Silent p.A1007A 0.31 TCGA-DU-7292-01 12 57989814 57989814 G A PIP4K2C Silent p.Q171Q 0.38 TCGA-DU-7292-01 12 65460502 65460502 G A WIF1 Nonsense_Mutation p.R217* 0.18 TCGA-DU-7292-01 13 27257045 27257045 C T WASF3 Missense_Mutation p.R429W 0.46 deleterious(0) possibly_damaging(0.896) TCGA-DU-7292-01 13 86368978 86368978 C T SLITRK6 Missense_Mutation p.E556K 0.39 deleterious(0.02) benign(0.008) TCGA-DU-7292-01 16 21702976 21702976 C G OTOA Missense_Mutation p.T236S 0.31 tolerated(0.2) benign(0.011) TCGA-DU-7292-01 16 3085393 3085393 G A CCDC64B Silent p.D35D 0.33 TCGA-DU-7292-01 17 10554966 10554966 C T MYH3 Missense_Mutation p.C123Y 0.35 deleterious(0.01) probably_damaging(0.926) TCGA-DU-7292-01 17 41059630 41059630 C T G6PC Missense_Mutation p.P144L 0.39 tolerated(0.21) benign(0.005) TCGA-DU-7292-01 17 48193445 48193445 C T SAMD14 Missense_Mutation p.R170H 0.32 deleterious(0) benign(0.077) TCGA-DU-7292-01 17 72436710 72436710 C T GPRC5C Silent p.Y310Y 0.22 TCGA-DU-7292-01 18 55027519 55027519 C T ST8SIA3 3'UTR 0.28 TCGA-DU-7292-01 19 14828520 14828520 A C ZNF333 Missense_Mutation p.E292A 0.38 tolerated(0.29) benign(0.292) TCGA-DU-7292-01 19 36590446 36590447 - GAAGCC WDR62 In_Frame_Ins p.K890_P891dup 0.31 TCGA-DU-7292-01 19 47423551 47423551 G A ARHGAP35 Missense_Mutation p.R540H 0.32 deleterious(0) probably_damaging(0.999) TCGA-DU-7292-01 19 50249906 50249906 G A TSKS Silent p.N271N 0.11 TCGA-DU-7292-01 19 53793799 53793799 G A BIRC8 5'UTR 0.35 TCGA-DU-7292-01 19 56369014 56369014 C G NLRP4 Intron 0.28 TCGA-DU-7292-01 1 167791265 167791265 A T ADCY10 Missense_Mutation p.I1428N 0.31 deleterious(0) possibly_damaging(0.757) TCGA-DU-7292-01 1 201384346 201384346 G A TNNI1 Silent p.L18L 0.22 TCGA-DU-7292-01 1 3394457 3394457 G A ARHGEF16 Missense_Mutation p.A498T 0.29 deleterious(0.04) possibly_damaging(0.612) TCGA-DU-7292-01 20 2321165 2321165 G A TGM3 Missense_Mutation p.D674N 0.30 tolerated(0.69) benign(0.056) TCGA-DU-7292-01 20 62127281 62127281 C G EEF1A2 Missense_Mutation p.K84N 0.06 tolerated_low_confidence(0.05) possibly_damaging(0.835) TCGA-DU-7292-01 21 27062196 27062196 A G JAM2 Missense_Mutation p.K51R 0.38 tolerated(0.13) benign(0.099) TCGA-DU-7292-01 21 41711192 41711192 C T DSCAM Missense_Mutation p.R454H 0.06 tolerated(0.08) possibly_damaging(0.458) TCGA-DU-7292-01 21 46951525 46951525 G T SLC19A1 Silent p.R243R 0.39 TCGA-DU-7292-01 21 47845846 47845846 C T PCNT Silent p.D2427D 0.23 TCGA-DU-7292-01 3 120360508 120360508 G A HGD Silent p.H269H 0.23 TCGA-DU-7292-01 4 119736623 119736623 C A SEC24D Missense_Mutation p.G219V 0.36 deleterious(0.01) probably_damaging(1) TCGA-DU-7292-01 4 155254333 155254333 C A DCHS2 Silent p.G510G 0.10 TCGA-DU-7292-01 4 170601232 170601232 C T CLCN3 Silent p.S64S 0.29 TCGA-DU-7292-01 4 71509397 71509397 G T ENAM Missense_Mutation p.A752S 0.34 deleterious(0.03) benign(0.165) TCGA-DU-7292-01 4 73434466 73434466 G C ADAMTS3 Nonsense_Mutation p.S5* 0.40 TCGA-DU-7292-01 4 76927403 76927403 C T CXCL9 Missense_Mutation p.R30H 0.28 deleterious(0) probably_damaging(1) TCGA-DU-7292-01 5 140202819 140202819 G A PCDHA5 Missense_Mutation p.A487T 0.33 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-DU-7292-01 5 140503168 140503168 G A PCDHB4 Missense_Mutation p.V530M 0.31 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-DU-7292-01 5 39202453 39202453 G A FYB Silent p.L214L 0.47 TCGA-DU-7292-01 5 55063741 55063741 C T DDX4 Missense_Mutation p.R123W 0.32 tolerated_low_confidence(0.05) benign(0.006) TCGA-DU-7292-01 5 7875377 7875377 G A MTRR Missense_Mutation p.G124D 0.35 deleterious(0) probably_damaging(1) TCGA-DU-7292-01 6 33996019 33996019 C T GRM4 Missense_Mutation p.R856H 0.28 tolerated(0.22) possibly_damaging(0.667) TCGA-DU-7292-01 6 35754868 35754868 G T CLPSL1 Missense_Mutation p.G65W 0.17 deleterious(0) probably_damaging(0.995) TCGA-DU-7292-01 7 142659378 142659378 C T KEL 5'UTR 0.13 TCGA-DU-7292-01 7 30695575 30695575 G A CRHR2 Silent p.R322R 0.36 TCGA-DU-7292-01 7 38282029 38282029 C A TRGC2 Missense_Mutation p.D143Y 0.30 tolerated(0.13) benign(0.251) TCGA-DU-7292-01 7 55221711 55221711 G C EGFR Missense_Mutation p.R252P 0.79 tolerated(0.06) possibly_damaging(0.838) TCGA-DU-7292-01 7 97498435 97498435 C G ASNS Missense_Mutation p.D12H 0.16 tolerated(0.2) benign(0.005) TCGA-DU-7292-01 8 10587872 10587872 C T SOX7 Silent p.S24S 0.24 TCGA-DU-7292-01 8 125082819 125082819 C T FER1L6 Nonsense_Mutation p.R1316* 0.36 TCGA-DU-7292-01 8 72987644 72987644 T C TRPA1 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0.03) benign(0.008) TCGA-DU-7292-01 9 19371678 19371678 C T DENND4C Intron 0.42 TCGA-DU-7292-01 9 19371681 19371681 C T DENND4C Intron 0.50 TCGA-DU-7292-01 9 75773611 75773611 C T ANXA1 Nonsense_Mutation p.Q23* 0.21 TCGA-DU-7292-01 9 79117864 79117864 G A GCNT1 Silent p.S189S 0.30 TCGA-DU-7292-01 X 12736404 12736404 C T FRMPD4 Silent p.D1153D 0.72 TCGA-DU-7292-01 X 84600916 84600916 G A POF1B Missense_Mutation p.H225Y 0.07 deleterious_low_confidence(0.01) benign(0.118) TCGA-DU-7294-01 10 1058578 1058578 C A GTPBP4 Silent p.P506P 0.12 TCGA-DU-7294-01 11 101323746 101323746 A G TRPC6 Silent p.L912L 0.35 TCGA-DU-7294-01 11 120732708 120732708 G T GRIK4 Missense_Mutation p.R262L 0.48 tolerated(0.14) possibly_damaging(0.828) TCGA-DU-7294-01 11 5799221 5799221 A G OR52N5 Missense_Mutation p.I215T 0.19 tolerated(0.06) possibly_damaging(0.864) TCGA-DU-7294-01 12 10277909 10277909 C T CLEC7A Missense_Mutation p.S160N 0.12 tolerated(0.33) benign(0.026) TCGA-DU-7294-01 12 111885211 111885211 G A SH2B3 Missense_Mutation p.G367S 0.29 deleterious(0) probably_damaging(1) TCGA-DU-7294-01 15 24924397 24924397 G C NPAP1 Missense_Mutation p.W1128S 0.35 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-DU-7294-01 15 41476577 41476577 G A EXD1 Missense_Mutation p.P366L 0.36 deleterious(0.04) benign(0.02) TCGA-DU-7294-01 16 55600782 55600782 A G CAPNS2 Silent p.G38G 0.09 TCGA-DU-7294-01 16 68894132 68894132 T C TANGO6 Missense_Mutation p.F147S 0.43 tolerated(1) benign(0) TCGA-DU-7294-01 18 20837289 20837289 C T CABLES1 Silent p.H620H 0.17 TCGA-DU-7294-01 19 11141525 11141525 G C SMARCA4 Missense_Mutation p.A1168P 0.27 probably_damaging(1) TCGA-DU-7294-01 19 35832001 35832001 T C CD22 Silent p.S489S 0.09 TCGA-DU-7294-01 19 42791815 42791815 T A CIC Missense_Mutation p.L234Q 0.64 probably_damaging(1) TCGA-DU-7294-01 19 46275947 46275947 G A DMPK Silent p.H442H 0.87 TCGA-DU-7294-01 1 154145663 154145663 A G TPM3 Missense_Mutation p.I131T 0.30 deleterious(0.03) possibly_damaging(0.671) TCGA-DU-7294-01 1 2529663 2529663 G A MMEL1 Nonsense_Mutation p.R419* 0.74 TCGA-DU-7294-01 20 33439058 33439058 C T GGT7 Silent p.A567A 0.27 TCGA-DU-7294-01 20 44237304 44237304 G A WFDC9 Silent p.N79N 0.11 TCGA-DU-7294-01 20 47836061 47836061 G A DDX27 Missense_Mutation p.G57R 0.09 tolerated(0.33) possibly_damaging(0.807) TCGA-DU-7294-01 21 47549370 47549370 G A COL6A2 Intron 0.30 TCGA-DU-7294-01 2 165579003 165579003 T C COBLL1 Missense_Mutation p.I231V 0.49 tolerated(0.67) benign(0.141) TCGA-DU-7294-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7294-01 2 219321847 219321847 A C USP37 Missense_Mutation p.V894G 0.08 deleterious(0) probably_damaging(0.925) TCGA-DU-7294-01 2 220379452 220379452 G A ASIC4 Silent p.P129P 0.09 TCGA-DU-7294-01 2 98377070 98377070 G A TMEM131 Silent p.S1698S 0.36 TCGA-DU-7294-01 5 133725924 133725924 G T UBE2B Silent p.L113L 0.10 TCGA-DU-7294-01 7 150500857 150500857 C A TMEM176A Silent p.P164P 0.33 TCGA-DU-7294-01 7 156447399 156447399 A G RNF32 Missense_Mutation p.E135G 0.07 tolerated(0.49) benign(0.015) TCGA-DU-7294-01 7 77998517 77998517 G C MAGI2 Silent p.G353G 0.25 TCGA-DU-7294-01 7 82583261 82583261 G A PCLO Silent p.S2336S 0.48 TCGA-DU-7294-01 7 96747045 96747045 C A ACN9 Silent p.R4R 0.41 TCGA-DU-7294-01 8 99169863 99169863 G A POP1 Silent p.K813K 0.10 TCGA-DU-7294-01 9 123586941 123586941 G T PSMD5 Missense_Mutation p.N279K 0.39 tolerated(0.05) probably_damaging(0.992) TCGA-DU-7294-01 9 368171 368171 G C DOCK8 Intron 0.62 TCGA-DU-7294-01 X 12904193 12904193 G C TLR7 Missense_Mutation p.C189S 0.36 deleterious(0) probably_damaging(0.999) TCGA-DU-7294-01 X 47269681 47269681 G A ZNF157 Missense_Mutation p.V27M 0.09 deleterious(0.03) possibly_damaging(0.595) TCGA-DU-7294-01 X 49022500 49022500 C A MAGIX Missense_Mutation p.P256H 0.10 tolerated(0.08) possibly_damaging(0.886) TCGA-DU-7294-01 X 75004654 75004654 C T MAGEE2 Missense_Mutation p.R78H 0.24 tolerated(0.1) probably_damaging(0.987) TCGA-DU-7294-01 X 83616611 83616611 G T HDX Missense_Mutation p.R439S 0.41 deleterious(0) probably_damaging(0.999) TCGA-DU-7298-01 11 31312399 31312399 T C DCDC1 Missense_Mutation p.D252G 0.40 deleterious(0.03) possibly_damaging(0.888) TCGA-DU-7298-01 12 109017462 109017462 C T SELPLG Missense_Mutation p.A224T 0.20 tolerated(0.16) unknown(0) TCGA-DU-7298-01 12 53431273 53431273 A G EIF4B Missense_Mutation p.K463E 0.38 tolerated(0.05) possibly_damaging(0.874) TCGA-DU-7298-01 14 23564434 23564434 C G ACIN1 Missense_Mutation p.R21P 0.07 possibly_damaging(0.512) TCGA-DU-7298-01 14 24040638 24040638 G A JPH4 Silent p.S434S 0.12 TCGA-DU-7298-01 17 15510998 15510998 C A RP11-385D13.1 Splice_Site p.X685_splice 0.47 TCGA-DU-7298-01 17 37107930 37107930 C T FBXO47 Missense_Mutation p.G174S 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-DU-7298-01 17 685481 685481 T C GLOD4 Silent p.R5R 0.18 TCGA-DU-7298-01 17 7578177 7578177 C T TP53 Silent p.E224E 0.50 TCGA-DU-7298-01 17 7578271 7578271 T G TP53 Missense_Mutation p.H193P 0.25 deleterious(0) probably_damaging(1) TCGA-DU-7298-01 18 55912729 55912729 A G NEDD4L Missense_Mutation p.T65A 0.20 deleterious(0) probably_damaging(0.987) TCGA-DU-7298-01 19 44740277 44740277 T A ZNF227 Missense_Mutation p.L565Q 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-DU-7298-01 19 7712712 7712712 C A STXBP2 3'UTR 0.08 TCGA-DU-7298-01 1 170633325 170633325 G C PRRX1 5'UTR 0.54 TCGA-DU-7298-01 1 17250936 17250936 G A CROCC Missense_Mutation p.D105N 0.26 probably_damaging(1) TCGA-DU-7298-01 1 20073705 20073705 C T TMCO4 Silent p.K188K 0.03 TCGA-DU-7298-01 1 216496989 216496989 A C USH2A Silent p.P459P 0.28 TCGA-DU-7298-01 1 26650673 26650673 C T AIM1L Nonsense_Mutation p.W695* 0.30 TCGA-DU-7298-01 1 48703490 48703490 G C SLC5A9 Missense_Mutation p.A503P 0.14 deleterious(0) probably_damaging(0.999) TCGA-DU-7298-01 1 75204387 75204387 A G TYW3 Missense_Mutation p.K90R 0.44 tolerated(0.11) benign(0.022) TCGA-DU-7298-01 20 50049078 50049078 C T NFATC2 Missense_Mutation p.V750I 0.32 tolerated(0.18) benign(0.045) TCGA-DU-7298-01 22 17443570 17443570 C T GAB4 3'UTR 0.12 TCGA-DU-7298-01 22 31484563 31484563 A G SMTN Missense_Mutation p.M89V 0.13 tolerated(0.3) possibly_damaging(0.722) TCGA-DU-7298-01 2 145157730 145157730 C G ZEB2 Missense_Mutation p.G342R 0.17 deleterious(0.03) probably_damaging(1) TCGA-DU-7298-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7298-01 2 27456961 27456961 C T CAD Missense_Mutation p.S1162L 0.46 deleterious(0) probably_damaging(1) TCGA-DU-7298-01 2 31588394 31588394 G A XDH Nonsense_Mutation p.R825* 0.29 TCGA-DU-7298-01 2 75929421 75929421 C T GCFC2 Missense_Mutation p.E175K 0.10 deleterious(0.03) benign(0.085) TCGA-DU-7298-01 3 101572700 101572700 G T NFKBIZ Missense_Mutation p.G444C 0.17 deleterious(0) probably_damaging(0.999) TCGA-DU-7298-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.18 deleterious(0.02) probably_damaging(0.965) TCGA-DU-7298-01 3 32754815 32754815 A G CNOT10 Missense_Mutation p.E236G 0.32 deleterious(0) possibly_damaging(0.904) TCGA-DU-7298-01 3 98217294 98217294 T C OR5K2 Missense_Mutation p.F257S 0.25 deleterious(0.03) benign(0.367) TCGA-DU-7298-01 4 121631494 121631494 C T PRDM5 Silent p.T566T 0.22 TCGA-DU-7298-01 4 55573303 55573303 C T KIT Missense_Mutation p.T322I 0.09 tolerated(0.06) probably_damaging(0.986) TCGA-DU-7298-01 4 66361196 66361196 T C EPHA5 Missense_Mutation p.S326G 0.09 deleterious(0) probably_damaging(0.914) TCGA-DU-7298-01 5 129039955 129039955 C A ADAMTS19 Silent p.G1055G 0.38 TCGA-DU-7298-01 5 131930714 131930714 T A RAD50 Silent p.I649I 0.14 TCGA-DU-7298-01 5 140203383 140203383 C G PCDHA5 Missense_Mutation p.P675A 0.06 tolerated_low_confidence(0.24) benign(0.123) TCGA-DU-7298-01 5 156482407 156482407 C G HAVCR1 Missense_Mutation p.V62L 0.27 deleterious(0.02) benign(0.198) TCGA-DU-7298-01 5 32089975 32089975 A G PDZD2 Missense_Mutation p.T2141A 0.07 tolerated(0.18) benign(0.001) TCGA-DU-7298-01 6 17764345 17764345 T C KIF13A Missense_Mutation p.Q1805R 0.25 deleterious_low_confidence(0) benign(0) TCGA-DU-7298-01 6 3105782 3105782 G - RIPK1 Frame_Shift_Del p.W358Cfs*154 0.26 TCGA-DU-7298-01 7 12668832 12668832 A T SCIN Missense_Mutation p.Q435L 0.25 tolerated(0.25) benign(0.036) TCGA-DU-7298-01 7 29134736 29134736 C T CPVL Nonsense_Mutation p.W142* 0.20 TCGA-DU-7298-01 9 135139467 135139467 G A SETX 3'UTR 0.42 TCGA-DU-7298-01 X 105167163 105167163 C T NRK Silent p.N889N 0.36 TCGA-DU-7298-01 X 150909279 150909279 C G CNGA2 Missense_Mutation p.L130V 0.25 tolerated(0.88) benign(0.002) TCGA-DU-7298-01 X 63410720 63410720 C T AMER1 Missense_Mutation p.R816Q 0.27 tolerated(0.92) benign(0.019) TCGA-DU-7298-01 X 76937745 76937745 T - ATRX Frame_Shift_Del p.V1002* 0.27 TCGA-DU-7299-01 10 61612347 61612349 TTC - CCDC6 In_Frame_Del p.E139del 0.31 TCGA-DU-7299-01 11 66834308 66834308 T C RHOD Missense_Mutation p.I107T 0.34 deleterious(0) benign(0.311) TCGA-DU-7299-01 12 6933476 6933476 G A GPR162 Missense_Mutation p.V138I 0.20 tolerated(0.2) benign(0.074) TCGA-DU-7299-01 12 7077659 7077659 C T PHB2 Missense_Mutation p.R131Q 0.25 deleterious(0) probably_damaging(0.909) TCGA-DU-7299-01 13 67801664 67801665 AA - PCDH9 Frame_Shift_Del p.F303Cfs*4 0.25 TCGA-DU-7299-01 14 37198737 37198737 C T SLC25A21 Missense_Mutation p.G102E 0.38 tolerated(1) benign(0.033) TCGA-DU-7299-01 16 11864798 11864799 GA - ZC3H7A Frame_Shift_Del p.P317* 0.25 TCGA-DU-7299-01 17 20805993 20805993 A G RP11-344E13.3 RNA 1.00 TCGA-DU-7299-01 17 29541467 29541468 AG - NF1 Splice_Site p.X465_splice 0.27 TCGA-DU-7299-01 17 29576134 29576134 C - NF1 Frame_Shift_Del p.Q1370Rfs*8 0.21 TCGA-DU-7299-01 17 60140577 60140579 TCT - MED13 In_Frame_Del p.E50del 0.10 TCGA-DU-7299-01 17 7577105 7577105 G A TP53 Missense_Mutation p.P278L 0.81 deleterious(0) probably_damaging(1) TCGA-DU-7299-01 17 76510921 76510921 C T DNAH17 Missense_Mutation p.V1346M 0.39 possibly_damaging(0.579) TCGA-DU-7299-01 17 8789796 8789796 C T PIK3R5 Missense_Mutation p.E678K 0.11 deleterious(0.05) possibly_damaging(0.591) TCGA-DU-7299-01 19 48198169 48198171 ATC - GLTSCR1 In_Frame_Del p.I971del 0.22 TCGA-DU-7299-01 1 151158055 151158055 C T VPS72 Silent p.P104P 0.08 TCGA-DU-7299-01 1 201047179 201047181 TCT - CACNA1S In_Frame_Del p.K482del 0.42 TCGA-DU-7299-01 1 235964233 235964233 A C LYST Missense_Mutation p.F1293V 0.05 tolerated(0.1) possibly_damaging(0.644) TCGA-DU-7299-01 1 240071460 240071460 A G CHRM3 Missense_Mutation p.I237V 0.08 deleterious(0.04) possibly_damaging(0.671) TCGA-DU-7299-01 1 24124673 24124673 G A GALE Silent p.G95G 0.34 TCGA-DU-7299-01 1 38261353 38261354 TC - MANEAL Intron 0.25 TCGA-DU-7299-01 1 8716199 8716200 CT - RERE Frame_Shift_Del p.S53* 0.25 TCGA-DU-7299-01 20 62839582 62839582 G T MYT1 Nonsense_Mutation p.E345* 0.35 TCGA-DU-7299-01 22 24175836 24175837 CT - SMARCB1 Frame_Shift_Del p.L356Dfs*4 0.08 TCGA-DU-7299-01 22 39883576 39883576 A G MGAT3 Missense_Mutation p.Y75C 0.22 tolerated_low_confidence(0.13) possibly_damaging(0.613) TCGA-DU-7299-01 2 141128328 141128328 A G LRP1B Silent p.D3653D 0.03 TCGA-DU-7299-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7299-01 2 220428315 220428316 AT - OBSL1 Frame_Shift_Del p.H814Rfs*16 0.32 TCGA-DU-7299-01 2 241989284 241989284 G A SNED1 Missense_Mutation p.D557N 0.22 tolerated(0.26) benign(0.104) TCGA-DU-7299-01 2 55479696 55479696 T C MTIF2 Missense_Mutation p.D253G 0.42 deleterious(0) probably_damaging(1) TCGA-DU-7299-01 5 140181907 140181907 C T PCDHA3 Silent p.S375S 0.32 TCGA-DU-7299-01 6 49663637 49663637 A G CRISP2 Silent p.A172A 0.32 TCGA-DU-7299-01 6 97597800 97597800 C G MMS22L Missense_Mutation p.L1193F 0.06 deleterious(0) probably_damaging(0.997) TCGA-DU-7299-01 7 121651754 121651754 C T PTPRZ1 Missense_Mutation p.A885V 0.05 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DU-7299-01 7 149489167 149489167 G A SSPO RNA 0.38 TCGA-DU-7299-01 7 64291898 64291898 C T ZNF138 Missense_Mutation p.T67I 0.13 tolerated(1) benign(0.009) TCGA-DU-7299-01 7 751125 751125 G C PRKAR1B Silent p.A6A 0.12 TCGA-DU-7299-01 8 8654899 8654899 G A MFHAS1 Missense_Mutation p.P1034L 0.42 tolerated(0.31) probably_damaging(0.997) TCGA-DU-7299-01 8 87241819 87241819 T A SLC7A13 Intron 0.41 TCGA-DU-7299-01 X 152034375 152034375 G A NSDHL Missense_Mutation p.A186T 0.04 deleterious(0.02) possibly_damaging(0.627) TCGA-DU-7300-01 10 15559198 15559198 C T ITGA8 Missense_Mutation p.D1051N 0.34 deleterious(0) possibly_damaging(0.842) TCGA-DU-7300-01 10 5203897 5203897 C T AKR1CL1 Silent p.P100P 0.35 TCGA-DU-7300-01 11 111365994 111365994 G A BTG4 Missense_Mutation p.R186C 0.33 deleterious(0.05) benign(0.046) TCGA-DU-7300-01 11 11642953 11642953 A G GALNT18 Missense_Mutation p.I63T 0.31 deleterious(0.04) benign(0.156) TCGA-DU-7300-01 11 59611461 59611461 T C GIF Silent p.S49S 0.20 TCGA-DU-7300-01 12 41333261 41333261 G A CNTN1 Silent p.G451G 0.23 TCGA-DU-7300-01 13 20221185 20221185 C T MPHOSPH8 Silent p.T324T 0.22 TCGA-DU-7300-01 13 21562426 21562426 C A LATS2 Missense_Mutation p.G498V 0.44 deleterious_low_confidence(0.03) benign(0.002) TCGA-DU-7300-01 13 35923310 35923313 ACAG - NBEA Frame_Shift_Del p.R1991Kfs*43 0.12 TCGA-DU-7300-01 14 31675151 31675152 AA - HECTD1 5'UTR 0.25 TCGA-DU-7300-01 15 43045062 43045066 ACTTA - TTBK2 Frame_Shift_Del p.L793* 0.26 TCGA-DU-7300-01 15 78764190 78764192 CCT - IREB2 In_Frame_Del p.L271del 0.29 TCGA-DU-7300-01 16 58287907 58287907 A G CCDC113 Silent p.R78R 0.34 TCGA-DU-7300-01 17 42991175 42991175 G T GFAP Missense_Mutation p.T180N 0.39 deleterious(0) possibly_damaging(0.462) TCGA-DU-7300-01 17 7125570 7125572 AGG - ACADVL In_Frame_Del p.E300del 0.32 TCGA-DU-7300-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.33 deleterious(0) probably_damaging(0.997) TCGA-DU-7300-01 18 72997649 72997651 AGA - TSHZ1 In_Frame_Del p.K52del 0.23 TCGA-DU-7300-01 19 33696671 33696671 G A LRP3 Missense_Mutation p.R332Q 0.90 tolerated(0.14) benign(0.017) TCGA-DU-7300-01 19 40023078 40023081 ACAA - EID2B Frame_Shift_Del p.F121Wfs*27 0.33 TCGA-DU-7300-01 19 42791372 42791373 AG - CIC Frame_Shift_Del p.S146* 0.17 TCGA-DU-7300-01 19 54245794 54245794 A G MIR520H RNA 0.32 TCGA-DU-7300-01 19 55105741 55105741 T A LILRA1 Missense_Mutation p.L11H 0.46 deleterious(0) probably_damaging(0.95) TCGA-DU-7300-01 19 59061018 59061021 GTGA - TRIM28 Splice_Site p.X661_splice 0.47 TCGA-DU-7300-01 19 852925 852925 C T ELANE Silent p.H39H 0.19 TCGA-DU-7300-01 1 32672060 32672060 T C IQCC Intron 0.16 TCGA-DU-7300-01 1 40701977 40701978 AA - RLF Frame_Shift_Del p.D537Qfs*8 0.33 TCGA-DU-7300-01 21 34860571 34860571 A T DNAJC28 Missense_Mutation p.M377K 0.26 tolerated(0.06) benign(0.001) TCGA-DU-7300-01 22 50689416 50689416 G T HDAC10 Missense_Mutation p.L16M 0.36 deleterious(0) probably_damaging(1) TCGA-DU-7300-01 2 149539217 149539218 AG - EPC2 Frame_Shift_Del p.G577Yfs*48 0.25 TCGA-DU-7300-01 2 152319418 152319418 C T RIF1 Silent p.D1128D 0.33 TCGA-DU-7300-01 2 155306962 155306962 G C GALNT13 Missense_Mutation p.D524H 0.33 deleterious(0.01) probably_damaging(0.966) TCGA-DU-7300-01 2 166170182 166170182 G A SCN2A Missense_Mutation p.G363S 0.31 deleterious(0.02) probably_damaging(1) TCGA-DU-7300-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7300-01 2 26686908 26686908 C T OTOF Missense_Mutation p.R1676H 0.31 deleterious(0.04) possibly_damaging(0.507) TCGA-DU-7300-01 2 73746974 73746976 AAC - ALMS1 In_Frame_Del p.T3205del 0.25 TCGA-DU-7300-01 2 98504555 98504555 G A TMEM131 Missense_Mutation p.P107S 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DU-7300-01 3 120315183 120315183 G A NDUFB4 5'UTR 0.10 TCGA-DU-7300-01 3 47455223 47455225 TAT - SCAP 3'UTR 0.41 TCGA-DU-7300-01 4 100263953 100263953 A G ADH1C Missense_Mutation p.M276T 0.31 benign(0.094) TCGA-DU-7300-01 4 107229997 107229997 G A TBCK Missense_Mutation p.R41C 0.26 deleterious(0) probably_damaging(0.999) TCGA-DU-7300-01 4 74012998 74012998 T C ANKRD17 Silent p.Q573Q 0.37 TCGA-DU-7300-01 5 54706365 54706367 CTT - SKIV2L2 In_Frame_Del p.L888del 0.25 TCGA-DU-7300-01 5 61779947 61779949 GAA - IPO11 In_Frame_Del p.E420del 0.37 TCGA-DU-7300-01 5 67589550 67589552 AAG - PIK3R1 In_Frame_Del p.E439del 0.34 TCGA-DU-7300-01 5 67589623 67589624 AT - PIK3R1 Frame_Shift_Del p.Y463* 0.29 TCGA-DU-7300-01 6 160201521 160201523 CTT - TCP1 In_Frame_Del p.E350del 0.17 TCGA-DU-7300-01 6 87966803 87966806 GTTT - ZNF292 Frame_Shift_Del p.V1154Ifs*7 0.10 TCGA-DU-7300-01 7 138603027 138603027 C T KIAA1549 Missense_Mutation p.E449K 0.09 deleterious(0) probably_damaging(0.997) TCGA-DU-7300-01 7 149990490 149990490 C T ACTR3C Missense_Mutation p.A22T 0.15 deleterious(0) probably_damaging(0.982) TCGA-DU-7300-01 7 44152194 44152196 AGA - AEBP1 In_Frame_Del p.K753del 0.10 TCGA-DU-7300-01 7 47840379 47840379 G A PKD1L1 Silent p.P2687P 0.27 TCGA-DU-7300-01 8 110487479 110487479 C T PKHD1L1 Missense_Mutation p.S2913L 0.36 deleterious(0.02) benign(0.31) TCGA-DU-7300-01 8 123965332 123965333 TT - ZHX2 Frame_Shift_Del p.F528Cfs*14 0.11 TCGA-DU-7300-01 8 27321507 27321507 T G CHRNA2 Silent p.A151A 0.18 TCGA-DU-7300-01 9 139413070 139413072 AGA - NOTCH1 In_Frame_Del p.F357del 0.21 TCGA-DU-7300-01 9 140953608 140953608 A T CACNA1B Missense_Mutation p.E1517D 0.07 deleterious(0) probably_damaging(0.999) TCGA-DU-7300-01 9 99296274 99296274 G A CDC14B Missense_Mutation p.A294V 0.50 tolerated(0.16) benign(0.098) TCGA-DU-7300-01 X 10085535 10085535 C T WWC3 Missense_Mutation p.S479L 0.30 deleterious(0.01) possibly_damaging(0.626) TCGA-DU-7300-01 X 107978402 107978402 G A IRS4 Silent p.D391D 0.33 TCGA-DU-7300-01 X 132091353 132091353 C T HS6ST2 Missense_Mutation p.V144I 0.16 tolerated_low_confidence(0.08) benign(0.005) TCGA-DU-7300-01 X 20205954 20205954 C A RPS6KA3 Missense_Mutation p.V256L 0.26 deleterious(0) probably_damaging(0.997) TCGA-DU-7300-01 X 47918328 47918328 A C ZNF630 Silent p.P501P 0.42 TCGA-DU-7300-01 X 48887870 48887870 G T TFE3 Missense_Mutation p.H509Q 0.11 tolerated(0.53) possibly_damaging(0.537) TCGA-DU-7300-01 X 49458759 49458760 TT - PAGE1 Frame_Shift_Del p.Q38Gfs*6 0.28 TCGA-DU-7301-01 10 105990414 105990414 G A WDR96 Missense_Mutation p.R85W 0.45 deleterious(0) probably_damaging(0.988) TCGA-DU-7301-01 10 95385365 95385365 G T PDE6C Nonsense_Mutation p.E300* 0.13 TCGA-DU-7301-01 11 101375482 101375482 C T TRPC6 Missense_Mutation p.R73H 0.35 deleterious(0) probably_damaging(0.996) TCGA-DU-7301-01 11 119050958 119050958 G A NLRX1 Missense_Mutation p.R743H 0.67 tolerated(0.19) benign(0.002) TCGA-DU-7301-01 11 55111136 55111136 T G OR4A16 Missense_Mutation p.S154A 0.06 tolerated_low_confidence(0.53) benign(0.361) TCGA-DU-7301-01 11 88027054 88027054 A G CTSC 3'UTR 0.55 TCGA-DU-7301-01 12 10215755 10215755 T C CLEC9A Missense_Mutation p.C141R 0.09 deleterious(0) probably_damaging(1) TCGA-DU-7301-01 17 47841412 47841412 G A FAM117A Missense_Mutation p.A13V 0.40 deleterious_low_confidence(0) unknown(0) TCGA-DU-7301-01 17 7578524 7578524 G C TP53 Missense_Mutation p.Q136E 0.95 deleterious(0) probably_damaging(0.997) TCGA-DU-7301-01 18 29054105 29054105 C T DSG3 Missense_Mutation p.A708V 0.04 deleterious(0.04) benign(0.091) TCGA-DU-7301-01 19 42396179 42396179 C T ARHGEF1 Silent p.F118F 0.46 TCGA-DU-7301-01 19 42857651 42857651 G A MEGF8 Silent p.R1128R 0.14 TCGA-DU-7301-01 1 1179654 1179654 C T FAM132A Missense_Mutation p.R99Q 0.06 tolerated(0.12) benign(0.134) TCGA-DU-7301-01 1 159842834 159842834 G A CCDC19 Missense_Mutation p.R493W 0.07 deleterious(0) probably_damaging(1) TCGA-DU-7301-01 1 203025938 203025938 C G PPFIA4 Missense_Mutation p.P250R 0.27 tolerated(0.14) benign(0.021) TCGA-DU-7301-01 1 216595785 216595785 C T USH2A 5'UTR 0.44 TCGA-DU-7301-01 1 247694813 247694813 G A OR2C3 3'UTR 0.15 TCGA-DU-7301-01 1 62995074 62995074 A G DOCK7 Silent p.L1188L 0.37 TCGA-DU-7301-01 20 37591029 37591029 C - DHX35 Frame_Shift_Del p.P7Rfs*2 0.39 TCGA-DU-7301-01 22 29090043 29090043 C T CHEK2 Missense_Mutation p.A523T 0.42 deleterious(0.03) probably_damaging(0.988) TCGA-DU-7301-01 22 50693717 50693717 G C MAPK12 Missense_Mutation p.F311L 0.46 tolerated(0.63) probably_damaging(0.999) TCGA-DU-7301-01 2 128477431 128477431 G A WDR33 Missense_Mutation p.P723L 0.06 deleterious_low_confidence(0) unknown(0) TCGA-DU-7301-01 2 152383461 152383461 C T NEB Missense_Mutation p.A7306T 0.35 probably_damaging(1) TCGA-DU-7301-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7301-01 3 37369109 37369109 A G GOLGA4 Missense_Mutation p.H1933R 0.50 benign(0.008) TCGA-DU-7301-01 3 47888021 47888023 ATC - DHX30 In_Frame_Del p.I488del 0.41 TCGA-DU-7301-01 3 95374179 95374179 C T MTHFD2P1 RNA 0.36 TCGA-DU-7301-01 4 162697089 162697089 T - FSTL5 Frame_Shift_Del p.M183Cfs*13 0.41 TCGA-DU-7301-01 5 33989379 33989379 A G AMACR Missense_Mutation p.V323A 0.33 tolerated(0.23) benign(0.003) TCGA-DU-7301-01 6 29408070 29408070 G A OR10C1 Missense_Mutation p.R93H 0.42 deleterious(0.03) possibly_damaging(0.7) TCGA-DU-7301-01 6 74228167 74228167 C A EEF1A1 Missense_Mutation p.K313N 0.31 deleterious_low_confidence(0.03) benign(0.424) TCGA-DU-7301-01 7 148809259 148809259 T A ZNF425 Missense_Mutation p.M92L 0.08 tolerated(1) benign(0) TCGA-DU-7301-01 8 101146458 101146458 T C FBXO43 Silent p.G603G 0.50 TCGA-DU-7301-01 8 35583683 35583683 C T UNC5D Silent p.L439L 0.06 TCGA-DU-7301-01 9 133942444 133942444 C T LAMC3 Silent p.N815N 0.11 TCGA-DU-7301-01 X 76938271 76938272 TT - ATRX Frame_Shift_Del p.K826Efs*4 0.44 TCGA-DU-7302-01 10 104809481 104809481 A G CNNM2 Missense_Mutation p.I547V 0.05 tolerated(0.07) benign(0.021) TCGA-DU-7302-01 10 50122058 50122058 C T LRRC18 Missense_Mutation p.R48H 0.32 deleterious(0) benign(0.108) TCGA-DU-7302-01 10 73544798 73544798 C T CDH23 Missense_Mutation p.R1890C 0.08 tolerated(0.08) benign(0.368) TCGA-DU-7302-01 10 76788369 76788370 AA - KAT6B Frame_Shift_Del p.K1263Rfs*7 0.08 TCGA-DU-7302-01 10 88819949 88819949 A C GLUD1 Missense_Mutation p.I416S 0.04 deleterious(0) probably_damaging(0.994) TCGA-DU-7302-01 11 114278270 114278273 TCAA - RBM7 Frame_Shift_Del p.N182Sfs*20 0.09 TCGA-DU-7302-01 11 128710111 128710111 C T KCNJ1 Missense_Mutation p.V29I 0.08 tolerated(0.24) benign(0) TCGA-DU-7302-01 11 418481 418483 TCT - ANO9 In_Frame_Del p.K746del 0.41 TCGA-DU-7302-01 11 47603920 47603922 TCT - NDUFS3 In_Frame_Del p.F178del 0.13 TCGA-DU-7302-01 11 85397064 85397064 G A CCDC89 Missense_Mutation p.T37M 0.08 tolerated_low_confidence(0.55) benign(0) TCGA-DU-7302-01 12 120151451 120151455 ATTCT - CIT Splice_Site p.X1436_splice 0.11 TCGA-DU-7302-01 12 120894951 120894951 C T GATC Silent p.R109R 0.34 TCGA-DU-7302-01 12 6128787 6128787 G A VWF Missense_Mutation p.P1266L 0.35 tolerated(0.08) possibly_damaging(0.872) TCGA-DU-7302-01 14 21971404 21971406 TTC - METTL3 In_Frame_Del p.K212del 0.14 TCGA-DU-7302-01 15 43584939 43584939 G A TGM7 Missense_Mutation p.T136I 0.43 deleterious(0.01) possibly_damaging(0.766) TCGA-DU-7302-01 15 78475123 78475123 C T ACSBG1 Nonsense_Mutation p.W223* 0.38 TCGA-DU-7302-01 16 22587946 22587946 G A RP11-368J21.3 RNA 0.25 TCGA-DU-7302-01 16 427459 427459 G A TMEM8A Silent p.S142S 0.33 TCGA-DU-7302-01 16 66997813 66997813 C T CES3 Missense_Mutation p.R179C 0.49 deleterious(0.01) probably_damaging(0.994) TCGA-DU-7302-01 16 88719764 88719764 C A MVD Missense_Mutation p.A356S 0.09 tolerated(0.72) benign(0.001) TCGA-DU-7302-01 17 10432336 10432336 C T MYH2 Missense_Mutation p.E1139K 0.30 deleterious(0) possibly_damaging(0.897) TCGA-DU-7302-01 17 2601759 2601761 GAA - CLUH In_Frame_Del p.F426del 0.24 TCGA-DU-7302-01 17 41168124 41168126 TTC - VAT1 In_Frame_Del p.K378del 0.08 TCGA-DU-7302-01 17 74732390 74732395 GGACTT - SRSF2 In_Frame_Del p.K172_S173del 0.15 TCGA-DU-7302-01 19 14574736 14574736 C T PKN1 Missense_Mutation p.T537I 0.10 deleterious(0.01) benign(0.185) TCGA-DU-7302-01 19 19307810 19307810 C T RFXANK Missense_Mutation p.R76W 0.11 deleterious(0.02) probably_damaging(0.982) TCGA-DU-7302-01 19 42798099 42798100 AG - CIC Frame_Shift_Del p.E1352Sfs*9 0.39 TCGA-DU-7302-01 19 53857020 53857021 GT - ZNF845 3'UTR 0.12 TCGA-DU-7302-01 1 172628634 172628634 G T FASLG Missense_Mutation p.G98V 0.10 deleterious(0) probably_damaging(1) TCGA-DU-7302-01 1 244217153 244217154 AG - ZBTB18 Frame_Shift_Del p.R27Tfs*7 0.10 TCGA-DU-7302-01 20 21492574 21492574 T - NKX2-2 Frame_Shift_Del p.Q270Rfs*47 0.28 TCGA-DU-7302-01 20 62705360 62705362 TTG - RGS19 In_Frame_Del p.N166del 0.12 TCGA-DU-7302-01 22 23974223 23974223 T C C22orf43 5'UTR 0.38 TCGA-DU-7302-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7302-01 2 21227213 21227213 G A APOB Silent p.A4005A 0.47 TCGA-DU-7302-01 2 25062839 25062839 C T ADCY3 Missense_Mutation p.V420M 0.12 deleterious(0) probably_damaging(1) TCGA-DU-7302-01 2 27522276 27522276 C T TRIM54 Missense_Mutation p.R169C 0.35 deleterious(0.01) possibly_damaging(0.886) TCGA-DU-7302-01 2 28210865 28210865 A - BRE Frame_Shift_Del p.I71Sfs*47 0.08 TCGA-DU-7302-01 3 58095050 58095050 G C FLNB Splice_Site p.X733_splice 0.35 TCGA-DU-7302-01 5 156378778 156378778 C T TIMD4 Missense_Mutation p.A142T 0.03 tolerated(1) benign(0) TCGA-DU-7302-01 6 123100903 123100903 T C FABP7 5'UTR 0.12 TCGA-DU-7302-01 6 15504753 15504755 CTT - JARID2 In_Frame_Del p.T824_F825delinsI 0.15 TCGA-DU-7302-01 6 44102308 44102308 C T TMEM63B 5'UTR 0.31 TCGA-DU-7302-01 6 87965943 87965944 GA - ZNF292 Frame_Shift_Del p.K867Rfs*10 0.10 TCGA-DU-7302-01 6 87966376 87966377 CT - ZNF292 Frame_Shift_Del p.L1011Qfs*4 0.20 TCGA-DU-7302-01 7 44042300 44042301 CT - SPDYE1 Frame_Shift_Del p.P124Rfs*3 0.11 TCGA-DU-7302-01 7 56145816 56145816 A T SUMF2 Nonsense_Mutation p.K224* 0.10 TCGA-DU-7302-01 7 65554152 65554155 TGTT - ASL Frame_Shift_Del p.F304Gfs*7 0.14 TCGA-DU-7302-01 7 79846804 79846805 TT - GNAI1 Frame_Shift_Del p.F354L 0.23 TCGA-DU-7302-01 9 139413070 139413072 AGA - NOTCH1 In_Frame_Del p.F357del 0.37 TCGA-DU-7302-01 X 139586763 139586763 G A SOX3 Missense_Mutation p.R155C 0.48 deleterious(0) probably_damaging(0.996) TCGA-DU-7302-01 X 153593776 153593776 A T FLNA Missense_Mutation p.F503Y 0.08 deleterious(0) possibly_damaging(0.613) TCGA-DU-7302-01 X 153678570 153678570 A C FAM50A Missense_Mutation p.K305T 0.05 deleterious(0) probably_damaging(0.998) TCGA-DU-7302-01 X 24006740 24006740 T C KLHL15 Silent p.E371E 0.44 TCGA-DU-7302-01 X 39932365 39932366 CT - BCOR Frame_Shift_Del p.R745Efs*6 0.26 TCGA-DU-7304-01 11 20950023 20950023 G A NELL1 Missense_Mutation p.R332Q 0.35 tolerated(0.35) benign(0.026) TCGA-DU-7304-01 12 21422506 21422506 A G SLCO1A2 Silent p.D663D 0.38 TCGA-DU-7304-01 12 52451162 52451164 TCT - NR4A1 In_Frame_Del p.F477del 0.42 TCGA-DU-7304-01 13 51825705 51825705 G A FAM124A Missense_Mutation p.V104I 0.36 tolerated(0.11) possibly_damaging(0.897) TCGA-DU-7304-01 14 21498757 21498757 A C TPPP2 Missense_Mutation p.E6A 0.11 deleterious(0.04) benign(0.11) TCGA-DU-7304-01 14 65198857 65198857 G C PLEKHG3 Missense_Mutation p.K334N 0.08 deleterious(0) probably_damaging(0.947) TCGA-DU-7304-01 14 67807223 67807223 C T ATP6V1D Missense_Mutation p.R179Q 0.36 deleterious(0.02) possibly_damaging(0.699) TCGA-DU-7304-01 15 20657760 20657760 C T HERC2P3 RNA 0.08 TCGA-DU-7304-01 15 42169508 42169508 A G SPTBN5 Missense_Mutation p.C1173R 0.41 benign(0.066) TCGA-DU-7304-01 16 69148261 69148261 G A HAS3 Missense_Mutation p.D252N 0.40 deleterious(0) possibly_damaging(0.746) TCGA-DU-7304-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.56 deleterious(0) probably_damaging(0.998) TCGA-DU-7304-01 17 7579311 7579311 C - TP53 Splice_Site p.X125_splice 0.30 TCGA-DU-7304-01 17 76832339 76832339 A G USP36 Missense_Mutation p.L36P 0.05 deleterious(0.01) probably_damaging(1) TCGA-DU-7304-01 19 17122404 17122404 C T CPAMD8 Missense_Mutation p.R191Q 0.05 tolerated(0.08) benign(0.036) TCGA-DU-7304-01 19 7606923 7606923 C T PNPLA6 Missense_Mutation p.R417C 0.40 deleterious(0.01) benign(0.052) TCGA-DU-7304-01 1 120437550 120437550 G A ADAM30 Silent p.C470C 0.14 TCGA-DU-7304-01 1 19510670 19510670 C T UBR4 Splice_Site p.X647_splice 0.10 TCGA-DU-7304-01 1 19595113 19595113 T G AKR7L Missense_Mutation p.M85L 0.28 benign(0) TCGA-DU-7304-01 1 206944736 206944736 A G IL10 Silent p.L64L 0.33 TCGA-DU-7304-01 1 27087503 27087503 C T ARID1A Nonsense_Mutation p.R693* 0.06 TCGA-DU-7304-01 20 4713271 4713271 G A PRNT Missense_Mutation p.L18F 0.58 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-DU-7304-01 22 39067165 39067165 G A CBY1 Missense_Mutation p.R92Q 0.05 tolerated(0.31) benign(0.016) TCGA-DU-7304-01 22 50875937 50875937 C A PPP6R2 Silent p.A536A 0.09 TCGA-DU-7304-01 2 159660849 159660849 A G DAPL1 Silent p.R38R 0.44 TCGA-DU-7304-01 2 179592377 179592377 T C TTN Missense_Mutation p.Q6643R 0.05 TCGA-DU-7304-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DU-7304-01 2 231108509 231108509 C T SP140 Missense_Mutation p.S185L 0.09 tolerated(0.62) benign(0.012) TCGA-DU-7304-01 3 12858002 12858002 C T CAND2 Missense_Mutation p.P524L 0.07 deleterious(0) probably_damaging(0.999) TCGA-DU-7304-01 3 132051045 132051045 C T ACPP Nonsense_Mutation p.R105* 0.05 TCGA-DU-7304-01 3 143708579 143708579 G C C3orf58 Missense_Mutation p.A397P 0.34 tolerated(0.16) benign(0.26) TCGA-DU-7304-01 3 169572755 169572755 C T LRRC31 Silent p.R279R 0.07 TCGA-DU-7304-01 4 74301968 74301968 T G AFP 5'UTR 0.36 TCGA-DU-7304-01 5 56181765 56181765 C T MAP3K1 Missense_Mutation p.S1330L 0.38 deleterious(0) probably_damaging(0.934) TCGA-DU-7304-01 6 106727551 106727551 T C ATG5 Missense_Mutation p.M155V 0.43 tolerated(0.37) possibly_damaging(0.472) TCGA-DU-7304-01 7 44153637 44153637 C A AEBP1 Missense_Mutation p.T1085N 0.06 deleterious_low_confidence(0) unknown(0) TCGA-DU-7304-01 9 134501730 134501730 G A RAPGEF1 Silent p.N428N 0.08 TCGA-DU-7304-01 9 134501807 134501807 G A RAPGEF1 Missense_Mutation p.H403Y 0.06 deleterious(0.02) possibly_damaging(0.685) TCGA-DU-7304-01 X 153297774 153297774 G A MECP2 Silent p.I99I 0.80 TCGA-DU-7304-01 X 76889091 76889091 T - ATRX Frame_Shift_Del p.K1640Sfs*6 0.51 TCGA-DU-7306-01 10 1405926 1405926 G A ADARB2 Missense_Mutation p.A125V 0.55 tolerated(0.17) benign(0.273) TCGA-DU-7306-01 11 118964042 118964042 A G HMBS 3'UTR 0.16 TCGA-DU-7306-01 11 55371099 55371099 G T OR4C11 Missense_Mutation p.P251T 0.14 deleterious(0) probably_damaging(0.969) TCGA-DU-7306-01 11 66328794 66328794 G C CTSF 3'Flank 0.33 TCGA-DU-7306-01 12 110824234 110824234 G C ANAPC7 Missense_Mutation p.L273V 0.41 tolerated(0.49) benign(0.001) TCGA-DU-7306-01 12 7092611 7092611 T C LPCAT3 Missense_Mutation p.I81V 0.40 deleterious(0.04) benign(0.081) TCGA-DU-7306-01 12 96052829 96052829 G C NTN4 3'UTR 0.31 TCGA-DU-7306-01 13 28197388 28197388 T C POLR1D 3'UTR 0.36 TCGA-DU-7306-01 14 33292355 33292355 T G AKAP6 Missense_Mutation p.I1779S 0.37 tolerated(0.08) probably_damaging(0.996) TCGA-DU-7306-01 15 48786433 48786433 C T FBN1 Missense_Mutation p.G899E 0.22 probably_damaging(1) TCGA-DU-7306-01 16 84516258 84516258 C T TLDC1 Silent p.T339T 0.33 TCGA-DU-7306-01 17 2576020 2576020 A G PAFAH1B1 Missense_Mutation p.K214E 0.34 tolerated(0.08) benign(0.09) TCGA-DU-7306-01 17 40133943 40133943 G A DNAJC7 Silent p.L438L 0.24 TCGA-DU-7306-01 17 56700218 56700218 C T TEX14 Missense_Mutation p.R136H 0.04 tolerated(0.1) benign(0.022) TCGA-DU-7306-01 17 7484866 7484866 G C CD68 3'UTR 0.44 TCGA-DU-7306-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.41 deleterious(0) probably_damaging(1) TCGA-DU-7306-01 18 34414311 34414311 C T KIAA1328 Silent p.Y29Y 0.52 TCGA-DU-7306-01 18 48703275 48703275 C G MEX3C Missense_Mutation p.G476R 0.30 deleterious(0) benign(0.016) TCGA-DU-7306-01 18 580857 580857 A C CETN1 Missense_Mutation p.D150A 0.18 deleterious(0) probably_damaging(0.995) TCGA-DU-7306-01 19 22847841 22869311 19:22847841-22869311 - ZNF492 large deletion 0.26 TCGA-DU-7306-01 19 3964267 3964267 G C DAPK3 Missense_Mutation p.N176K 0.24 deleterious(0.03) probably_damaging(0.987) TCGA-DU-7306-01 19 43999703 43999703 C T PHLDB3 Missense_Mutation p.A299T 0.46 tolerated(0.37) benign(0.025) TCGA-DU-7306-01 19 48342788 48342788 C T CRX Missense_Mutation p.T155M 0.08 tolerated(0.07) benign(0.23) TCGA-DU-7306-01 19 48953672 48953672 C G GRWD1 Missense_Mutation p.Q191E 0.24 tolerated(1) benign(0.001) TCGA-DU-7306-01 19 56423195 56423195 A T NLRP13 Missense_Mutation p.L663H 0.04 deleterious(0) probably_damaging(0.95) TCGA-DU-7306-01 19 8841995 8841995 C A OR2Z1 Nonsense_Mutation p.S202* 0.12 TCGA-DU-7306-01 1 12071583 12071583 C T MFN2 Silent p.L745L 0.37 TCGA-DU-7306-01 1 1374627 1374627 G A VWA1 Silent p.T266T 0.41 TCGA-DU-7306-01 1 147381232 147381232 G C GJA8 Missense_Mutation p.E384Q 0.54 tolerated(0.35) benign(0.008) TCGA-DU-7306-01 1 16893743 16893743 A G NBPF1 Missense_Mutation p.C924R 0.06 tolerated(0.3) benign(0.029) TCGA-DU-7306-01 1 183201918 183201918 G C LAMC2 Missense_Mutation p.V716L 0.34 tolerated(0.05) benign(0.008) TCGA-DU-7306-01 1 201618190 201618190 G C NAV1 Missense_Mutation p.A132P 0.30 tolerated(0.18) benign(0.039) TCGA-DU-7306-01 1 244773582 244773582 T C C1orf101 Missense_Mutation p.I815T 0.42 tolerated(0.68) benign(0.03) TCGA-DU-7306-01 1 247608070 247608070 C G NLRP3 Silent p.V986V 0.06 TCGA-DU-7306-01 1 248028031 248028031 C T TRIM58 Missense_Mutation p.R181C 0.30 deleterious(0.04) benign(0.022) TCGA-DU-7306-01 1 55590210 55590210 C A USP24 Missense_Mutation p.S1351I 0.07 deleterious(0.01) benign(0.265) TCGA-DU-7306-01 1 90401127 90401127 C G LRRC8D Missense_Mutation p.L834V 0.44 tolerated(0.06) benign(0.119) TCGA-DU-7306-01 1 99753520 99753520 G C LPPR4 Splice_Site p.X75_splice 0.05 TCGA-DU-7306-01 20 50701276 50701276 G A ZFP64 Silent p.G586G 0.28 TCGA-DU-7306-01 2 102785082 102785082 T C IL1R1 Missense_Mutation p.V227A 0.08 tolerated(0.6) possibly_damaging(0.461) TCGA-DU-7306-01 2 131520232 131520232 G A AMER3 Missense_Mutation p.R196Q 0.06 tolerated(0.77) benign(0.012) TCGA-DU-7306-01 2 136872470 136872470 T C CXCR4 Missense_Mutation p.E347G 0.53 tolerated_low_confidence(0.38) unknown(0) TCGA-DU-7306-01 2 179495026 179495026 C T TTN Silent p.T14741T 0.42 TCGA-DU-7306-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-7306-01 2 234622136 234622136 A T UGT1A5 Missense_Mutation p.I167F 0.03 deleterious(0) possibly_damaging(0.772) TCGA-DU-7306-01 2 26587719 26587719 C T EPT1 Missense_Mutation p.A49V 0.05 deleterious(0) probably_damaging(0.913) TCGA-DU-7306-01 3 111705808 111705808 A C ABHD10 Silent p.A162A 0.35 TCGA-DU-7306-01 3 113677375 113677375 C T ZDHHC23 Silent p.I402I 0.34 TCGA-DU-7306-01 3 121409831 121409831 C T GOLGB1 Missense_Mutation p.A2794T 0.41 benign(0.005) TCGA-DU-7306-01 3 3078931 3078931 G C CNTN4 Missense_Mutation p.E671Q 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-DU-7306-01 3 51663382 51663382 T C RAD54L2 Missense_Mutation p.V125A 0.38 tolerated(0.72) possibly_damaging(0.471) TCGA-DU-7306-01 4 103970144 103970144 G C SLC9B2 Missense_Mutation p.L207V 0.37 tolerated(0.14) possibly_damaging(0.776) TCGA-DU-7306-01 4 110445986 110445986 C G SEC24B Missense_Mutation p.L841V 0.04 deleterious(0) probably_damaging(0.999) TCGA-DU-7306-01 4 153896041 153896041 C T FHDC1 Missense_Mutation p.P533L 0.36 deleterious(0.01) possibly_damaging(0.564) TCGA-DU-7306-01 4 90035215 90035215 G T TIGD2 Missense_Mutation p.D364Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-DU-7306-01 5 102201853 102201853 C G PAM 5'UTR 0.50 TCGA-DU-7306-01 5 121187709 121187709 G A FTMT Silent p.A17A 0.06 TCGA-DU-7306-01 5 141353304 141353304 A G RNF14 Missense_Mutation p.S51G 0.05 tolerated(0.12) benign(0.102) TCGA-DU-7306-01 5 36986119 36986120 - G NIPBL Frame_Shift_Ins p.R949Qfs*17 0.30 TCGA-DU-7306-01 6 107009224 107009224 T C AIM1 Missense_Mutation p.I1588T 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-DU-7306-01 6 123687319 123687319 G A TRDN Nonsense_Mutation p.R428* 0.21 TCGA-DU-7306-01 6 135522782 135522782 A G MYB Silent p.E652E 0.07 TCGA-DU-7306-01 6 54806708 54806708 A G FAM83B Missense_Mutation p.N980S 0.09 tolerated(0.41) benign(0.003) TCGA-DU-7306-01 6 90312803 90312803 C T ANKRD6 Missense_Mutation p.A92V 0.35 tolerated(0.09) benign(0.212) TCGA-DU-7306-01 7 95165776 95165776 A G ASB4 Missense_Mutation p.K336E 0.28 tolerated(0.84) benign(0.008) TCGA-DU-7306-01 7 99811425 99811425 T C STAG3 Missense_Mutation p.I1222T 0.22 tolerated_low_confidence(0.08) benign(0.001) TCGA-DU-7306-01 8 124117596 124117596 G T TBC1D31 Missense_Mutation p.K367N 0.24 deleterious(0.03) possibly_damaging(0.564) TCGA-DU-7306-01 8 124359562 124359562 G C ATAD2 Missense_Mutation p.T661S 0.22 tolerated(1) benign(0.004) TCGA-DU-7306-01 8 57214036 57214036 T C SDR16C5 3'UTR 0.41 TCGA-DU-7306-01 8 61654055 61654055 G C CHD7 Missense_Mutation p.E22Q 0.50 benign(0.403) TCGA-DU-7306-01 8 95906307 95906307 T C CCNE2 Missense_Mutation p.T19A 0.05 tolerated(0.71) benign(0) TCGA-DU-7306-01 9 109690957 109690957 T - ZNF462 Frame_Shift_Del p.L1589Wfs*4 0.29 TCGA-DU-7306-01 9 137293638 137293638 G A RXRA Silent p.P63P 0.40 TCGA-DU-7306-01 9 20866927 20866927 G A FOCAD Splice_Site p.X703_splice 0.21 TCGA-DU-7306-01 9 5769212 5769212 C A KIAA1432 Missense_Mutation p.A1127D 0.12 tolerated(0.2) benign(0.087) TCGA-DU-7306-01 X 1404769 1404769 A G CSF2RA Missense_Mutation p.K59E 0.25 tolerated(1) benign(0.001) TCGA-DU-7306-01 X 23956785 23956785 T C CXorf58 Silent p.L303L 0.77 TCGA-DU-7306-01 X 76814303 76814306 ATAA - ATRX Frame_Shift_Del p.F2113Sfs*9 0.79 TCGA-DU-7309-01 10 102112184 102112184 C T SCD Silent p.S124S 0.37 TCGA-DU-7309-01 10 75565368 75565368 G C NDST2 Missense_Mutation p.Q575E 0.06 tolerated(1) benign(0) TCGA-DU-7309-01 10 91178137 91178137 A G IFIT5 Missense_Mutation p.N394S 0.05 tolerated(0.92) benign(0.001) TCGA-DU-7309-01 11 47434972 47434972 G A SLC39A13 Missense_Mutation p.A187T 0.28 tolerated(0.34) benign(0.005) TCGA-DU-7309-01 12 1219448 1219448 G A ERC1 Missense_Mutation p.E418K 0.11 deleterious(0.05) probably_damaging(0.992) TCGA-DU-7309-01 12 18854628 18854628 C T PLCZ1 Missense_Mutation p.R316H 0.15 tolerated(0.3) benign(0) TCGA-DU-7309-01 12 51497961 51497961 C G TFCP2 Missense_Mutation p.E315Q 0.04 tolerated(0.15) benign(0.424) TCGA-DU-7309-01 12 52863046 52863046 C T KRT6C Missense_Mutation p.G499S 0.17 tolerated(0.54) unknown(0) TCGA-DU-7309-01 12 56501319 56501319 A G PA2G4 Silent p.T136T 0.13 TCGA-DU-7309-01 15 59961125 59961125 T C BNIP2 Missense_Mutation p.M408V 0.37 tolerated(0.07) probably_damaging(0.986) TCGA-DU-7309-01 15 63127959 63127959 T C TLN2 Silent p.A2384A 0.18 TCGA-DU-7309-01 15 90631837 90631837 C A IDH2 Missense_Mutation p.R172S 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-7309-01 16 20648161 20648161 A G ACSM1 Missense_Mutation p.V400A 0.32 deleterious(0) possibly_damaging(0.525) TCGA-DU-7309-01 16 20990739 20990739 C T DNAH3 Silent p.T2663T 0.07 TCGA-DU-7309-01 16 30037991 30037991 T C FAM57B Missense_Mutation p.K128R 0.29 tolerated(0.6) benign(0.128) TCGA-DU-7309-01 16 56226231 56226231 C G GNAO1 Missense_Mutation p.I28M 0.46 tolerated(0.13) benign(0.023) TCGA-DU-7309-01 17 74076491 74076492 CT - ZACN Frame_Shift_Del p.L178Qfs*28 0.34 TCGA-DU-7309-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.65 deleterious(0) probably_damaging(1) TCGA-DU-7309-01 18 5397173 5397173 C G EPB41L3 Missense_Mutation p.V909L 0.06 tolerated(0.21) benign(0.007) TCGA-DU-7309-01 19 38955316 38955316 G A RYR1 Missense_Mutation p.D942N 0.27 possibly_damaging(0.672) TCGA-DU-7309-01 19 6828446 6828446 C T VAV1 Missense_Mutation p.T347M 0.09 deleterious(0) probably_damaging(0.984) TCGA-DU-7309-01 1 111966210 111966210 T A OVGP1 Missense_Mutation p.R146S 0.26 deleterious(0) probably_damaging(1) TCGA-DU-7309-01 1 153315567 153315567 T C PGLYRP4 Silent p.K157K 0.42 TCGA-DU-7309-01 1 6697392 6697392 T C DNAJC11 Missense_Mutation p.I464V 0.04 tolerated(0.11) benign(0.403) TCGA-DU-7309-01 20 25261592 25261592 C G PYGB Missense_Mutation p.A416G 0.13 tolerated(0.3) benign(0.014) TCGA-DU-7309-01 2 218999633 218999633 G A CXCR2 Missense_Mutation p.A37T 0.33 tolerated(0.36) benign(0.003) TCGA-DU-7309-01 2 29016792 29016792 A T PPP1CB Missense_Mutation p.N270Y 0.24 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-DU-7309-01 2 65296819 65296819 C G CEP68 Missense_Mutation p.P81A 0.15 tolerated(0.36) benign(0.384) TCGA-DU-7309-01 2 65296821 65296821 A G CEP68 Silent p.P81P 0.16 TCGA-DU-7309-01 4 100532549 100532549 T C MTTP Missense_Mutation p.L643P 0.04 deleterious(0) probably_damaging(0.971) TCGA-DU-7309-01 4 57834617 57834617 C G NOA1 Missense_Mutation p.R527T 0.05 deleterious(0) probably_damaging(0.999) TCGA-DU-7309-01 4 70080096 70080096 G A UGT2B11 Silent p.I115I 0.23 TCGA-DU-7309-01 5 115803413 115803413 G C SEMA6A Missense_Mutation p.T587S 0.32 tolerated(0.88) benign(0.004) TCGA-DU-7309-01 5 161128598 161128598 C T GABRA6 Missense_Mutation p.A394V 0.23 tolerated(0.63) benign(0.001) TCGA-DU-7309-01 6 106992514 106992514 A G AIM1 Missense_Mutation p.D1295G 0.05 deleterious(0.02) probably_damaging(0.938) TCGA-DU-7309-01 6 150111138 150111138 A G PCMT1 Missense_Mutation p.K139E 0.35 deleterious(0.01) possibly_damaging(0.732) TCGA-DU-7309-01 6 30231249 30231249 G A HCG17 Intron 0.07 TCGA-DU-7309-01 6 31668779 31668779 G A ABHD16A Missense_Mutation p.P95S 0.17 tolerated(0.32) possibly_damaging(0.554) TCGA-DU-7309-01 6 43310590 43310590 G A ZNF318 Missense_Mutation p.R1034C 0.15 benign(0.002) TCGA-DU-7309-01 6 83863326 83863326 C G DOPEY1 Missense_Mutation p.L2076V 0.08 deleterious(0) probably_damaging(0.998) TCGA-DU-7309-01 7 100696423 100696423 G C MUC17 Silent p.V4420V 0.20 TCGA-DU-7309-01 7 40899974 40899974 G A SUGCT Missense_Mutation p.G438R 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-DU-7309-01 7 43477795 43477795 G A HECW1 Intron 0.37 TCGA-DU-7309-01 8 2040226 2040226 G A MYOM2 Silent p.S627S 0.08 TCGA-DU-7309-01 8 71581352 71581352 C G LACTB2 Missense_Mutation p.A2P 0.08 deleterious(0.01) possibly_damaging(0.522) TCGA-DU-7309-01 9 90500727 90500727 A G SPATA31E1 Missense_Mutation p.D442G 0.04 tolerated(1) benign(0) TCGA-DU-7309-01 X 131524902 131524902 C G MBNL3 Missense_Mutation p.Q248H 0.06 deleterious(0.05) benign(0.018) TCGA-DU-7309-01 X 153629216 153629216 C T RPL10 3'UTR 0.10 TCGA-DU-7309-01 X 70073157 70073157 C A TEX11 Nonsense_Mutation p.E131* 0.28 TCGA-DU-7309-01 X 76813014 76813014 C A ATRX Nonsense_Mutation p.E2203* 0.43 TCGA-DU-8158-01 10 23292319 23292319 C T ARMC3 Silent p.N569N 0.45 TCGA-DU-8158-01 10 89717715 89717716 - A PTEN Frame_Shift_Ins p.P248Tfs*5 0.34 TCGA-DU-8158-01 11 118772576 118772576 T C BCL9L Missense_Mutation p.M626V 0.33 benign(0.011) TCGA-DU-8158-01 11 133402270 133402270 T C OPCML 5'UTR 0.24 TCGA-DU-8158-01 11 72528829 72528829 G C ATG16L2 Missense_Mutation p.V83L 0.29 tolerated(0.59) benign(0.006) TCGA-DU-8158-01 12 124914176 124914176 C A NCOR2 Missense_Mutation p.G378C 0.12 unknown(0) TCGA-DU-8158-01 12 994382 994382 C T WNK1 Missense_Mutation p.P1471L 0.25 tolerated_low_confidence(0.09) benign(0.23) TCGA-DU-8158-01 14 53175072 53175072 A G PSMC6 Missense_Mutation p.E58G 0.55 deleterious(0) probably_damaging(0.948) TCGA-DU-8158-01 15 49447771 49447771 G C COPS2 Missense_Mutation p.S2C 0.47 deleterious(0.01) unknown(0) TCGA-DU-8158-01 15 81241306 81241306 C T KIAA1199 3'UTR 0.55 TCGA-DU-8158-01 15 85610300 85610300 G A PDE8A Missense_Mutation p.C100Y 0.53 deleterious(0) probably_damaging(1) TCGA-DU-8158-01 16 72132924 72132924 C T DHX38 Missense_Mutation p.P288L 0.35 deleterious(0.03) possibly_damaging(0.641) TCGA-DU-8158-01 16 72993684 72993684 C A ZFHX3 Missense_Mutation p.D121Y 0.16 possibly_damaging(0.675) TCGA-DU-8158-01 16 81953235 81953235 C A PLCG2 Missense_Mutation p.P734H 0.29 deleterious(0) probably_damaging(0.989) TCGA-DU-8158-01 17 2324130 2324130 G A METTL16 Silent p.S319S 0.31 TCGA-DU-8158-01 17 72343952 72343952 G A KIF19 Missense_Mutation p.A321T 0.27 deleterious(0.02) probably_damaging(0.969) TCGA-DU-8158-01 19 7083553 7083553 C G ZNF557 Missense_Mutation p.T364R 0.08 tolerated(0.07) probably_damaging(0.949) TCGA-DU-8158-01 1 10386237 10386237 C T KIF1B Missense_Mutation p.T869M 0.08 tolerated(0.05) benign(0.03) TCGA-DU-8158-01 1 179876983 179876983 G C TOR1AIP1 Missense_Mutation p.K274N 0.10 tolerated_low_confidence(0.15) benign(0.271) TCGA-DU-8158-01 1 190067492 190067492 C T BRINP3 Missense_Mutation p.D653N 0.38 deleterious(0) probably_damaging(0.996) TCGA-DU-8158-01 1 19209803 19209803 G A ALDH4A1 Silent p.S191S 0.19 TCGA-DU-8158-01 1 19209838 19209838 G C ALDH4A1 Missense_Mutation p.L180V 0.26 tolerated(0.14) possibly_damaging(0.872) TCGA-DU-8158-01 1 32542835 32542835 C T TMEM39B Missense_Mutation p.T169M 0.10 deleterious(0.03) probably_damaging(0.939) TCGA-DU-8158-01 1 38227461 38227461 C T EPHA10 Missense_Mutation p.A156T 0.09 deleterious(0) probably_damaging(0.998) TCGA-DU-8158-01 1 92606709 92606709 G T BTBD8 Nonsense_Mutation p.G291* 0.04 TCGA-DU-8158-01 21 15748040 15748040 G A HSPA13 Silent p.G227G 0.24 TCGA-DU-8158-01 21 30699512 30699513 TA - BACH1 Frame_Shift_Del p.L456* 0.28 TCGA-DU-8158-01 22 23631729 23631729 C G BCR Silent p.S876S 0.41 TCGA-DU-8158-01 2 141274478 141274478 C G LRP1B Missense_Mutation p.G2710A 0.27 probably_damaging(0.939) TCGA-DU-8158-01 2 196877622 196877622 C T DNAH7 Missense_Mutation p.R293H 0.42 tolerated(0.06) benign(0.097) TCGA-DU-8158-01 3 148792096 148792096 A C HLTF Silent p.P145P 0.59 TCGA-DU-8158-01 3 164906713 164906713 G T SLITRK3 Missense_Mutation p.P636T 0.25 tolerated(0.71) benign(0.026) TCGA-DU-8158-01 3 44763989 44763989 C T ZNF502 3'UTR 0.24 TCGA-DU-8158-01 3 52597305 52597305 G A PBRM1 Intron 0.06 TCGA-DU-8158-01 3 53837571 53837571 G C CACNA1D Missense_Mutation p.E1873Q 0.32 tolerated_low_confidence(0.1) possibly_damaging(0.81) TCGA-DU-8158-01 5 161324195 161324195 G C GABRA1 Missense_Mutation p.A380P 0.24 tolerated(0.37) benign(0.009) TCGA-DU-8158-01 6 83884095 83884095 G T PGM3 Missense_Mutation p.Q442K 0.30 deleterious(0) possibly_damaging(0.574) TCGA-DU-8158-01 7 21640450 21640450 C T DNAH11 Missense_Mutation p.L1053F 0.27 probably_damaging(1) TCGA-DU-8158-01 7 55211008 55211008 A T EGFR Missense_Mutation p.E84V 0.25 deleterious(0) probably_damaging(1) TCGA-DU-8158-01 7 83119551 83119551 G T SEMA3E Missense_Mutation p.P52H 0.26 tolerated(0.95) benign(0.004) TCGA-DU-8158-01 8 101287238 101287238 G A RNF19A Missense_Mutation p.R276C 0.27 deleterious(0) probably_damaging(0.996) TCGA-DU-8158-01 8 142231748 142231748 G A SLC45A4 Missense_Mutation p.R69W 0.07 deleterious(0) probably_damaging(0.966) TCGA-DU-8158-01 8 144945911 144945911 C T EPPK1 Missense_Mutation p.R504Q 0.29 benign(0.006) TCGA-DU-8158-01 9 72131516 72131516 G T APBA1 Missense_Mutation p.A204E 0.45 tolerated_low_confidence(0.11) benign(0.401) TCGA-DU-8158-01 X 101623781 101623781 A G NXF2B Missense_Mutation p.I194T 0.23 deleterious(0) possibly_damaging(0.762) TCGA-DU-8158-01 X 114541268 114541268 G A LUZP4 Missense_Mutation p.V281M 0.17 tolerated(0.41) benign(0.003) TCGA-DU-8158-01 X 125686452 125686452 G A DCAF12L1 Missense_Mutation p.T47M 0.28 deleterious(0.04) possibly_damaging(0.466) TCGA-DU-8158-01 X 23899066 23899066 T A APOO Missense_Mutation p.I5F 0.43 deleterious(0.05) benign(0.028) TCGA-DU-8158-01 X 51150493 51150493 G A CXorf67 Missense_Mutation p.A209T 0.18 tolerated(0.21) benign(0.005) TCGA-DU-8158-01 X 57620231 57620231 G A ZXDB Missense_Mutation p.A584T 0.05 tolerated(0.18) benign(0.034) TCGA-DU-8161-01 10 30315252 30315252 G A KIAA1462 Silent p.S1275S 0.33 TCGA-DU-8161-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.38 TCGA-DU-8161-01 10 96535209 96535209 C T CYP2C19 Missense_Mutation p.R132W 0.39 deleterious(0.02) possibly_damaging(0.528) TCGA-DU-8161-01 10 96818194 96818194 A G CYP2C8 Silent p.L239L 0.35 TCGA-DU-8161-01 11 116693916 116693916 G C APOA4 5'UTR 0.22 TCGA-DU-8161-01 11 429619 429619 C T ANO9 Missense_Mutation p.R289H 0.23 deleterious(0) probably_damaging(0.991) TCGA-DU-8161-01 11 5530632 5530632 G A UBQLN3 Missense_Mutation p.R53C 0.27 deleterious(0) probably_damaging(1) TCGA-DU-8161-01 11 5841699 5841699 G C OR52N2 Missense_Mutation p.C45S 0.22 tolerated(0.26) benign(0.023) TCGA-DU-8161-01 11 5906225 5906225 C T OR52E4 Nonsense_Mutation p.R235* 0.29 TCGA-DU-8161-01 12 103249024 103249025 - C PAH Frame_Shift_Ins p.K199Rfs*7 0.09 TCGA-DU-8161-01 12 50185608 50185608 C T NCKAP5L 3'UTR 0.19 TCGA-DU-8161-01 12 63543919 63543919 C T AVPR1A Missense_Mutation p.G233D 0.29 tolerated(0.06) benign(0.255) TCGA-DU-8161-01 14 76101273 76101273 A G FLVCR2 Silent p.G347G 0.11 TCGA-DU-8161-01 15 78921630 78921630 G T CHRNB4 Missense_Mutation p.H339Q 0.24 tolerated(0.6) benign(0.007) TCGA-DU-8161-01 15 79277481 79277481 G A RASGRF1 Silent p.I1110I 0.17 TCGA-DU-8161-01 16 68894308 68894308 G T TANGO6 Missense_Mutation p.A206S 0.21 tolerated(0.14) benign(0.1) TCGA-DU-8161-01 17 4088255 4088255 C G ANKFY1 Silent p.L561L 0.17 TCGA-DU-8161-01 17 68171457 68171457 G A KCNJ2 Missense_Mutation p.V93I 0.23 tolerated(0.64) benign(0.004) TCGA-DU-8161-01 18 56246388 56246388 C T ALPK2 Silent p.P540P 0.23 TCGA-DU-8161-01 19 40221984 40221984 G A CLC 3'UTR 0.23 TCGA-DU-8161-01 19 46664038 46664038 C G IGFL2 Missense_Mutation p.L92V 0.21 tolerated(0.18) benign(0.322) TCGA-DU-8161-01 19 52220447 52220447 C T HAS1 Splice_Site p.X235_splice 0.19 TCGA-DU-8161-01 19 54802564 54802564 C T LILRA3 Missense_Mutation p.G293S 0.29 deleterious(0.01) probably_damaging(0.969) TCGA-DU-8161-01 19 8136967 8136967 C A FBN3 Missense_Mutation p.D2685Y 0.23 deleterious(0.02) possibly_damaging(0.594) TCGA-DU-8161-01 1 12837725 12837725 C T PRAMEF12 Nonsense_Mutation p.Q479* 0.29 TCGA-DU-8161-01 1 153604060 153604060 C G S100A1 Intron 0.04 TCGA-DU-8161-01 1 160093068 160093069 - C ATP1A2 Frame_Shift_Ins p.T83Hfs*4 0.18 TCGA-DU-8161-01 1 160849160 160849160 C T ITLN1 Missense_Mutation p.E244K 0.24 deleterious(0.05) possibly_damaging(0.85) TCGA-DU-8161-01 1 16372121 16372121 G A CLCNKB Missense_Mutation p.G57R 0.20 deleterious(0) benign(0.387) TCGA-DU-8161-01 1 176838145 176838145 T C ASTN1 Missense_Mutation p.Y1161C 0.26 deleterious(0) probably_damaging(0.999) TCGA-DU-8161-01 1 198703516 198703516 G C PTPRC Missense_Mutation p.V747L 0.24 deleterious(0.01) probably_damaging(0.967) TCGA-DU-8161-01 1 207039239 207039239 G A IL20 Silent p.A14A 0.21 TCGA-DU-8161-01 1 225706962 225706962 C T ENAH Missense_Mutation p.R247Q 0.29 tolerated_low_confidence(0.2) unknown(0) TCGA-DU-8161-01 1 234454541 234454541 C T SLC35F3 Silent p.A333A 0.04 TCGA-DU-8161-01 20 30723918 30723918 A G TM9SF4 Silent p.E57E 0.22 TCGA-DU-8161-01 21 39755664 39755664 G A ERG Silent p.R374R 0.26 TCGA-DU-8161-01 2 166892601 166892601 G A SCN1A Missense_Mutation p.T1129M 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-DU-8161-01 2 234750028 234750028 C G HJURP Missense_Mutation p.M466I 0.36 deleterious(0.04) benign(0.004) TCGA-DU-8161-01 2 70904917 70904917 G C ADD2 Silent p.P492P 0.19 TCGA-DU-8161-01 3 126201115 126201115 G A UROC1 3'UTR 0.14 TCGA-DU-8161-01 3 14939167 14939167 T C FGD5 Missense_Mutation p.L967P 0.18 deleterious(0) probably_damaging(0.985) TCGA-DU-8161-01 3 87322565 87322565 G T POU1F1 Missense_Mutation p.T75K 0.16 tolerated_low_confidence(0.06) benign(0.003) TCGA-DU-8161-01 4 38798156 38798156 C T TLR1 Missense_Mutation p.G766D 0.28 deleterious(0) probably_damaging(0.919) TCGA-DU-8161-01 4 48173432 48173432 G C TEC Missense_Mutation p.A93G 0.21 deleterious(0) possibly_damaging(0.906) TCGA-DU-8161-01 5 140019344 140019344 G A TMCO6 Missense_Mutation p.E36K 0.17 deleterious(0.02) possibly_damaging(0.542) TCGA-DU-8161-01 5 141033476 141033476 G C ARAP3 3'UTR 0.25 TCGA-DU-8161-01 5 180047927 180047927 C T FLT4 Missense_Mutation p.V750M 0.17 deleterious(0) probably_damaging(0.973) TCGA-DU-8161-01 6 160241563 160241563 T C PNLDC1 3'UTR 0.31 TCGA-DU-8161-01 6 74135195 74135195 A C MB21D1 Missense_Mutation p.F442V 0.28 deleterious(0) probably_damaging(0.916) TCGA-DU-8161-01 7 107114948 107114948 C A GPR22 Missense_Mutation p.A148E 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-DU-8161-01 7 154863096 154863096 G C HTR5A Missense_Mutation p.A163P 0.18 deleterious(0.03) possibly_damaging(0.869) TCGA-DU-8161-01 7 50459521 50459521 C T IKZF1 Silent p.N228N 0.18 TCGA-DU-8161-01 7 82583644 82583644 C A PCLO Missense_Mutation p.V2209F 0.18 unknown(0) TCGA-DU-8161-01 8 18257611 18257611 G A NAT2 Missense_Mutation p.R33Q 0.23 tolerated(0.36) benign(0.043) TCGA-DU-8161-01 9 134360379 134360379 G A PRRC2B Silent p.P1870P 0.07 TCGA-DU-8161-01 9 138530972 138530972 C T GLT6D1 Missense_Mutation p.R21H 0.11 tolerated(0.65) benign(0.002) TCGA-DU-8161-01 X 48337056 48337056 A G FTSJ1 Silent p.P81P 0.17 TCGA-DU-8161-01 X 64752492 64752492 T C LAS1L Silent p.S127S 0.26 TCGA-DU-8162-01 10 88418311 88418311 C T OPN4 Silent p.A176A 0.11 TCGA-DU-8162-01 11 9459665 9459665 C G IPO7 Missense_Mutation p.A843G 0.05 deleterious(0) benign(0.138) TCGA-DU-8162-01 12 107090062 107090062 T G RFX4 Missense_Mutation p.V233G 0.17 deleterious(0) probably_damaging(0.988) TCGA-DU-8162-01 12 274929 274929 C T IQSEC3 Silent p.L948L 0.06 TCGA-DU-8162-01 14 24884570 24884570 G A NYNRIN Silent p.G1205G 0.11 TCGA-DU-8162-01 15 34640382 34640382 G A NUTM1 Missense_Mutation p.G77S 0.05 tolerated(0.12) benign(0.344) TCGA-DU-8162-01 17 26939672 26939672 C T SGK494 Missense_Mutation p.G171R 0.15 tolerated(0.23) benign(0.165) TCGA-DU-8162-01 19 15073150 15073150 G A SLC1A6 Missense_Mutation p.T200M 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-DU-8162-01 19 15791263 15791263 C T CYP4F12 Silent p.P153P 0.14 TCGA-DU-8162-01 19 3589459 3589459 G T GIPC3 Missense_Mutation p.S204I 0.05 deleterious(0.01) benign(0.034) TCGA-DU-8162-01 19 36046172 36046172 A T ATP4A Missense_Mutation p.I741N 0.12 deleterious(0) probably_damaging(0.993) TCGA-DU-8162-01 19 50140129 50140129 C T RRAS Missense_Mutation p.R99H 0.10 deleterious(0) possibly_damaging(0.748) TCGA-DU-8162-01 1 152280001 152280001 G C FLG Missense_Mutation p.T2454R 0.03 possibly_damaging(0.875) TCGA-DU-8162-01 1 152732631 152732631 C A KPRP Missense_Mutation p.S189R 0.04 tolerated(0.13) benign(0.038) TCGA-DU-8162-01 1 186055385 186055385 A T HMCN1 Silent p.P2964P 0.13 TCGA-DU-8162-01 1 207297690 207297690 C A C4BPA Missense_Mutation p.P229T 0.20 deleterious(0) probably_damaging(0.979) TCGA-DU-8162-01 22 20229976 20229976 C T RTN4R Missense_Mutation p.R227H 0.08 deleterious(0.01) possibly_damaging(0.701) TCGA-DU-8162-01 2 89442331 89442331 G A IGKV3-20 Missense_Mutation p.T25M 0.09 deleterious(0.01) possibly_damaging(0.548) TCGA-DU-8162-01 2 96970469 96970469 C T SNRNP200 Silent p.P61P 0.05 TCGA-DU-8162-01 3 118865808 118865808 A G C3orf30 Missense_Mutation p.I258V 0.07 tolerated(0.36) benign(0.003) TCGA-DU-8162-01 4 100208046 100208046 C T ADH1A Missense_Mutation p.V74M 0.08 deleterious(0) probably_damaging(0.97) TCGA-DU-8162-01 4 527753 527753 G A PIGG Silent p.L906L 0.08 TCGA-DU-8162-01 5 9629469 9629469 C T TAS2R1 Missense_Mutation p.A226T 0.13 tolerated(0.06) probably_damaging(0.918) TCGA-DU-8162-01 6 110778136 110778136 G A SLC22A16 Silent p.V46V 0.13 TCGA-DU-8162-01 6 1313285 1313285 C T FOXQ1 Missense_Mutation p.R116W 0.15 deleterious(0) probably_damaging(0.998) TCGA-DU-8162-01 7 100187922 100187922 G A FBXO24 Silent p.P126P 0.19 TCGA-DU-8162-01 7 128490958 128490958 C T FLNC Missense_Mutation p.H1834Y 0.09 tolerated(0.14) probably_damaging(1) TCGA-DU-8162-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.57 deleterious(0) possibly_damaging(0.75) TCGA-DU-8162-01 8 2027640 2027640 G A MYOM2 Splice_Site p.X488_splice 0.12 TCGA-DU-8162-01 9 108151350 108151350 G A SLC44A1 3'UTR 0.19 TCGA-DU-8162-01 X 101912054 101912054 G A GPRASP1 Silent p.P1071P 0.12 TCGA-DU-8162-01 X 118774683 118774683 C T SEPT6 Silent p.A253A 0.11 TCGA-DU-8162-01 X 30269229 30269229 G A MAGEB1 Missense_Mutation p.V207M 0.18 tolerated(0.11) possibly_damaging(0.872) TCGA-DU-8163-01 11 12315446 12315446 A G MICALCL Silent p.K156K 0.07 TCGA-DU-8163-01 11 67232592 67232592 G A TMEM134 Intron 0.16 TCGA-DU-8163-01 11 6898019 6898019 C G OR10A4 Missense_Mutation p.I47M 0.07 deleterious(0.02) possibly_damaging(0.736) TCGA-DU-8163-01 12 57861814 57861814 G A GLI1 Missense_Mutation p.R372H 0.10 deleterious(0) probably_damaging(0.997) TCGA-DU-8163-01 15 30001004 30001004 G A TJP1 Nonsense_Mutation p.R1537* 0.30 TCGA-DU-8163-01 15 59911328 59911328 G A GCNT3 Silent p.A297A 0.12 TCGA-DU-8163-01 16 55736304 55736304 C G SLC6A2 Intron 0.10 TCGA-DU-8163-01 16 55736305 55736305 A G SLC6A2 Intron 0.11 TCGA-DU-8163-01 17 19283952 19283952 C G MAPK7 Missense_Mutation p.L144V 0.14 deleterious(0) possibly_damaging(0.466) TCGA-DU-8163-01 17 19284535 19284535 C T MAPK7 Missense_Mutation p.A338V 0.07 tolerated(1) unknown(0) TCGA-DU-8163-01 17 27434129 27434129 C T MYO18A Missense_Mutation p.G1137E 0.26 tolerated(0.06) probably_damaging(1) TCGA-DU-8163-01 17 61557164 61557164 C T ACE Silent p.Y182Y 0.04 TCGA-DU-8163-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.62 deleterious(0) probably_damaging(0.993) TCGA-DU-8163-01 1 16101379 16101379 C T FBLIM1 Silent p.C326C 0.14 TCGA-DU-8163-01 1 16352610 16352610 A G CLCNKA Silent p.G122G 0.13 TCGA-DU-8163-01 1 223900426 223900426 C G CAPN2 Silent p.L28L 0.35 TCGA-DU-8163-01 1 248458716 248458716 C T OR2T12 Silent p.R55R 0.18 TCGA-DU-8163-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-8163-01 2 44028017 44028017 G A DYNC2LI1 Missense_Mutation p.R231H 0.10 deleterious(0.02) benign(0.191) TCGA-DU-8163-01 3 196812552 196812552 G A DLG1 Silent p.I612I 0.05 TCGA-DU-8163-01 3 39227182 39227182 G A XIRP1 Missense_Mutation p.A1252V 0.28 deleterious(0.05) possibly_damaging(0.831) TCGA-DU-8163-01 6 26043861 26043861 G C HIST1H2BB Missense_Mutation p.P9A 0.08 tolerated_low_confidence(0.09) benign(0) TCGA-DU-8163-01 X 76814188 76814188 A C ATRX Nonsense_Mutation p.Y2152* 0.16 TCGA-DU-8163-01 X 76944328 76944328 G A ATRX Nonsense_Mutation p.Q193* 0.19 TCGA-DU-8164-01 11 59245678 59245678 C T OR4D10 Missense_Mutation p.A259V 0.05 tolerated(0.16) benign(0.439) TCGA-DU-8164-01 12 15654567 15654567 T C PTPRO Silent p.P225P 0.30 TCGA-DU-8164-01 14 72961928 72961928 C A RGS6 Missense_Mutation p.P308H 0.43 deleterious(0) probably_damaging(0.999) TCGA-DU-8164-01 15 50189590 50189590 A C ATP8B4 Missense_Mutation p.Y866D 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-DU-8164-01 16 30581515 30581515 A T ZNF688 Missense_Mutation p.C185S 0.46 deleterious(0) probably_damaging(0.995) TCGA-DU-8164-01 17 46691864 46691864 G A HOXB8 Missense_Mutation p.P68L 0.45 tolerated(0.13) benign(0.001) TCGA-DU-8164-01 17 74464864 74464864 G T AANAT Missense_Mutation p.E57D 0.12 tolerated_low_confidence(0.55) benign(0.009) TCGA-DU-8164-01 17 7835153 7835153 G A TRAPPC1 5'UTR 0.08 TCGA-DU-8164-01 17 80367258 80367258 C T OGFOD3 Missense_Mutation p.G137R 0.05 deleterious(0.04) probably_damaging(0.997) TCGA-DU-8164-01 18 50731664 50731664 C T DCC Missense_Mutation p.P551L 0.28 deleterious(0) probably_damaging(1) TCGA-DU-8164-01 19 14083696 14083696 G C RFX1 Silent p.G391G 0.17 TCGA-DU-8164-01 19 18679431 18679431 C T KXD1 Missense_Mutation p.T174M 0.31 tolerated_low_confidence(0.06) benign(0.033) TCGA-DU-8164-01 19 4792851 4792851 C T FEM1A Missense_Mutation p.R329C 0.39 deleterious(0) probably_damaging(1) TCGA-DU-8164-01 19 852344 852344 C T ELANE Nonsense_Mutation p.R6* 0.45 TCGA-DU-8164-01 1 118166651 118166651 G A FAM46C Nonsense_Mutation p.W387* 0.21 TCGA-DU-8164-01 1 154062058 154062058 G A NUP210L Nonsense_Mutation p.R734* 0.34 TCGA-DU-8164-01 1 181549908 181549908 A G CACNA1E Missense_Mutation p.Y316C 0.07 deleterious(0) probably_damaging(0.926) TCGA-DU-8164-01 1 47333730 47333730 G A CYP4Z2P RNA 0.54 TCGA-DU-8164-01 1 75038852 75038852 C A C1orf173 Missense_Mutation p.V848F 0.48 tolerated(0.06) benign(0.116) TCGA-DU-8164-01 1 78430888 78430888 A - FUBP1 Frame_Shift_Del p.I167Mfs*25 0.49 TCGA-DU-8164-01 22 37770047 37770047 C T ELFN2 Missense_Mutation p.G510S 0.41 tolerated(0.33) benign(0.011) TCGA-DU-8164-01 2 138413213 138413213 G T THSD7B Missense_Mutation p.C1366F 0.11 deleterious(0) unknown(0) TCGA-DU-8164-01 2 179435704 179435704 C T TTN Missense_Mutation p.R25052H 0.40 TCGA-DU-8164-01 2 191184490 191184490 G T HIBCH 5'UTR 0.39 TCGA-DU-8164-01 2 191184491 191184491 A T HIBCH 5'UTR 0.39 TCGA-DU-8164-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-8164-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.41 tolerated(0.06) possibly_damaging(0.801) TCGA-DU-8164-01 3 47155394 47155394 C G SETD2 Missense_Mutation p.G1563R 0.33 deleterious(0) probably_damaging(1) TCGA-DU-8164-01 3 65342024 65342024 C T MAGI1 3'Flank 0.11 TCGA-DU-8164-01 4 157689077 157689077 C T PDGFC Missense_Mutation p.V257M 0.08 deleterious(0) probably_damaging(1) TCGA-DU-8164-01 4 71527853 71527853 G A IGJ Silent p.S48S 0.36 TCGA-DU-8164-01 4 77818021 77818021 A C SOWAHB Missense_Mutation p.W328G 0.35 deleterious(0) benign(0.307) TCGA-DU-8164-01 5 167674704 167674704 A G TENM2 Missense_Mutation p.I2254V 0.35 tolerated(0.08) probably_damaging(0.992) TCGA-DU-8164-01 5 52781675 52781675 G T FST Intron 0.36 TCGA-DU-8164-01 5 94918892 94918892 G T ARSK Missense_Mutation p.W230L 0.29 deleterious(0) probably_damaging(0.995) TCGA-DU-8164-01 6 26027273 26027273 C T HIST1H4B Missense_Mutation p.A70T 0.06 tolerated(0.07) possibly_damaging(0.577) TCGA-DU-8164-01 6 35208200 35208200 C G SCUBE3 Missense_Mutation p.N334K 0.09 deleterious(0) probably_damaging(0.984) TCGA-DU-8164-01 6 40400680 40400680 C T LRFN2 Missense_Mutation p.R58H 0.44 deleterious(0) probably_damaging(1) TCGA-DU-8164-01 6 46801256 46801256 G A MEP1A Silent p.S530S 0.09 TCGA-DU-8164-01 7 99022522 99022522 C A ATP5J2-PTCD1 Missense_Mutation p.V594F 0.44 deleterious(0.03) possibly_damaging(0.673) TCGA-DU-8164-01 8 38297826 38297826 T C FGFR1 Intron 0.20 TCGA-DU-8164-01 9 107531159 107531159 G A NIPSNAP3B Missense_Mutation p.R96Q 0.17 deleterious(0.03) possibly_damaging(0.832) TCGA-DU-8164-01 9 98009714 98009714 C T FANCC Missense_Mutation p.D84N 0.22 deleterious(0.02) possibly_damaging(0.57) TCGA-DU-8165-01 11 102587093 102587093 G T MMP8 Missense_Mutation p.P281H 0.38 deleterious(0) probably_damaging(1) TCGA-DU-8165-01 11 4608347 4608347 T C OR52I2 Missense_Mutation p.V102A 0.28 tolerated(0.16) benign(0.077) TCGA-DU-8165-01 11 4976474 4976474 A T OR51A2 Missense_Mutation p.L157Q 0.13 deleterious(0) probably_damaging(0.994) TCGA-DU-8165-01 11 5878650 5878650 T C OR52E8 Missense_Mutation p.T95A 0.38 tolerated(0.57) benign(0) TCGA-DU-8165-01 11 69950226 69950226 C T ANO1 Missense_Mutation p.S221F 0.40 deleterious(0) benign(0.007) TCGA-DU-8165-01 11 70319315 70319315 G C SHANK2 Missense_Mutation p.L1738V 0.35 tolerated(0.07) benign(0.001) TCGA-DU-8165-01 12 124228804 124228804 G A ATP6V0A2 Missense_Mutation p.G416R 0.24 deleterious(0) probably_damaging(1) TCGA-DU-8165-01 12 21069204 21069204 G A SLCO1B3 3'UTR 0.08 TCGA-DU-8165-01 12 43822162 43822162 T A ADAMTS20 Missense_Mutation p.Q1276L 0.05 tolerated(0.1) possibly_damaging(0.559) TCGA-DU-8165-01 12 55524375 55524375 G A OR9K2 Missense_Mutation p.V275M 0.18 tolerated(0.12) benign(0.142) TCGA-DU-8165-01 12 85521757 85521757 A T LRRIQ1 Missense_Mutation p.R1385S 0.12 tolerated(0.51) benign(0.03) TCGA-DU-8165-01 14 53138414 53138414 T C ERO1L Missense_Mutation p.T148A 0.69 tolerated(0.43) benign(0.128) TCGA-DU-8165-01 15 51773679 51773679 T C DMXL2 Missense_Mutation p.D1875G 0.12 tolerated(0.17) benign(0.015) TCGA-DU-8165-01 16 23085199 23085199 A G USP31 Missense_Mutation p.Y727H 0.18 tolerated(0.16) benign(0.015) TCGA-DU-8165-01 16 28331420 28331420 G C SBK1 Silent p.V151V 0.25 TCGA-DU-8165-01 16 3282875 3282875 C T ZNF200 Silent p.K99K 0.29 TCGA-DU-8165-01 16 55362679 55362679 G A IRX6 Silent p.E263E 0.06 TCGA-DU-8165-01 17 36093613 36093613 G T HNF1B Missense_Mutation p.A249D 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-DU-8165-01 17 38458308 38458308 G A CDC6 3'UTR 0.13 TCGA-DU-8165-01 17 52978162 52978162 G A TOM1L1 5'UTR 0.07 TCGA-DU-8165-01 17 55917007 55917007 C A MRPS23 3'UTR 0.38 TCGA-DU-8165-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.24 deleterious(0) probably_damaging(0.998) TCGA-DU-8165-01 17 7578458 7578458 G T TP53 Missense_Mutation p.R158S 0.30 deleterious(0) probably_damaging(0.991) TCGA-DU-8165-01 17 9546373 9546373 A G WDR16 Missense_Mutation p.Y574C 0.19 deleterious(0) probably_damaging(0.997) TCGA-DU-8165-01 18 28935112 28935112 G T DSG1 Missense_Mutation p.G985C 0.29 deleterious(0) benign(0.091) TCGA-DU-8165-01 18 8113636 8113636 T A PTPRM Missense_Mutation p.L670H 0.21 deleterious(0) probably_damaging(0.924) TCGA-DU-8165-01 19 17922692 17922692 C A B3GNT3 Missense_Mutation p.P294T 0.10 deleterious(0) probably_damaging(1) TCGA-DU-8165-01 19 18780086 18780086 C T KLHL26 3'UTR 0.11 TCGA-DU-8165-01 19 31040286 31040286 G T ZNF536 Missense_Mutation p.G1254W 0.22 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-DU-8165-01 19 36046429 36046429 G C ATP4A Silent p.V690V 0.06 TCGA-DU-8165-01 19 43519344 43519344 A G PSG11 Silent p.N296N 0.26 TCGA-DU-8165-01 19 54849804 54849804 T A LILRA4 Missense_Mutation p.K73I 0.29 tolerated(0.23) benign(0.015) TCGA-DU-8165-01 1 152129014 152129014 T C RPTN Silent p.R187R 0.03 TCGA-DU-8165-01 1 153934816 153934826 CTGGCGGGAAG - SLC39A1 Frame_Shift_Del p.A63Efs*25 0.21 TCGA-DU-8165-01 1 154516509 154516509 G A TDRD10 Missense_Mutation p.V192I 0.27 tolerated(0.64) benign(0) TCGA-DU-8165-01 1 183938503 183938503 C T COLGALT2 Silent p.R244R 0.24 TCGA-DU-8165-01 1 196621212 196621212 G T CFH 5'UTR 0.41 TCGA-DU-8165-01 1 245862231 245862231 C T KIF26B Missense_Mutation p.R2024C 0.27 deleterious(0.02) unknown(0) TCGA-DU-8165-01 1 248004441 248004441 C A OR11L1 Missense_Mutation p.G253V 0.27 deleterious(0) probably_damaging(0.991) TCGA-DU-8165-01 1 248685648 248685648 G A OR2G6 Missense_Mutation p.R234H 0.30 deleterious(0) probably_damaging(0.961) TCGA-DU-8165-01 1 38227727 38227727 T C EPHA10 Missense_Mutation p.H67R 0.27 tolerated(0.2) benign(0.202) TCGA-DU-8165-01 1 70712575 70712575 C G SRSF11 Missense_Mutation p.S336C 0.07 deleterious(0) unknown(0) TCGA-DU-8165-01 1 82418675 82418675 A - LPHN2 Intron 0.27 TCGA-DU-8165-01 20 23016128 23016128 C T SSTR4 Missense_Mutation p.A3V 0.26 tolerated_low_confidence(0.2) benign(0) TCGA-DU-8165-01 20 50224091 50224091 T C ATP9A Missense_Mutation p.I926M 0.09 tolerated(0.28) benign(0.04) TCGA-DU-8165-01 20 8737747 8737747 G T PLCB1 Missense_Mutation p.A860S 0.20 tolerated(0.5) benign(0.029) TCGA-DU-8165-01 22 17473039 17473039 G A GAB4 Missense_Mutation p.R68W 0.36 deleterious(0.05) benign(0.005) TCGA-DU-8165-01 22 22664156 22664156 C A BMS1P20 RNA 0.10 TCGA-DU-8165-01 2 106690448 106690448 C G C2orf40 Silent p.P78P 0.29 TCGA-DU-8165-01 2 166901577 166901577 T C SCN1A Silent p.E546E 0.32 TCGA-DU-8165-01 2 167288988 167288988 C T SCN7A Missense_Mutation p.S811N 0.27 tolerated(0.3) benign(0.015) TCGA-DU-8165-01 2 170060647 170060647 C T LRP2 Missense_Mutation p.R2617Q 0.36 probably_damaging(0.999) TCGA-DU-8165-01 2 170115593 170115593 G A LRP2 Missense_Mutation p.R819C 0.19 probably_damaging(0.991) TCGA-DU-8165-01 2 189850395 189850395 C G COL3A1 Missense_Mutation p.P113R 0.31 unknown(0) TCGA-DU-8165-01 2 198570143 198570143 C T MARS2 Missense_Mutation p.S5F 0.12 tolerated_low_confidence(0.73) benign(0.259) TCGA-DU-8165-01 3 122334547 122334547 C A PARP15 Intron 0.31 TCGA-DU-8165-01 3 170219060 170219060 C A SLC7A14 Missense_Mutation p.V127F 0.12 deleterious(0) probably_damaging(0.998) TCGA-DU-8165-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.31 tolerated(0.05) possibly_damaging(0.704) TCGA-DU-8165-01 3 36779214 36779214 G C DCLK3 Missense_Mutation p.L313V 0.44 tolerated(0.52) benign(0.001) TCGA-DU-8165-01 3 52727062 52727062 G A GNL3 Silent p.Q348Q 0.08 TCGA-DU-8165-01 4 155254316 155254316 C A DCHS2 Missense_Mutation p.R516L 0.26 deleterious(0.02) possibly_damaging(0.53) TCGA-DU-8165-01 4 186380589 186380589 G C CCDC110 Missense_Mutation p.F384L 0.22 tolerated(0.95) benign(0.018) TCGA-DU-8165-01 4 20597371 20597371 C T SLIT2 Silent p.D1078D 0.47 TCGA-DU-8165-01 5 140214298 140214298 G T PCDHA7 Silent p.V110V 0.34 TCGA-DU-8165-01 5 142779650 142779650 T C NR3C1 Missense_Mutation p.D252G 0.06 tolerated(0.08) probably_damaging(0.91) TCGA-DU-8165-01 5 145393444 145393444 G A SH3RF2 Silent p.R293R 0.16 TCGA-DU-8165-01 5 149375645 149375645 G T TIGD6 Silent p.I89I 0.44 TCGA-DU-8165-01 5 150943010 150943010 A G FAT2 Silent p.A1150A 0.09 TCGA-DU-8165-01 5 38464022 38464022 T G EGFLAM Missense_Mutation p.D996E 0.05 tolerated(0.07) probably_damaging(1) TCGA-DU-8165-01 5 52344295 52344295 C A ITGA2 Missense_Mutation p.P164T 0.51 deleterious(0) probably_damaging(1) TCGA-DU-8165-01 6 127797356 127797356 G C SOGA3 Missense_Mutation p.I605M 0.08 deleterious(0.05) probably_damaging(0.998) TCGA-DU-8165-01 6 54806263 54806263 C A FAM83B Missense_Mutation p.H832N 0.32 tolerated(0.25) benign(0.03) TCGA-DU-8165-01 7 128494111 128494111 C T FLNC Missense_Mutation p.R2190C 0.34 tolerated(0.07) benign(0.003) TCGA-DU-8165-01 7 142197584 142197584 A T TRBV11-2 RNA 0.14 TCGA-DU-8165-01 7 53103578 53103578 G T POM121L12 Missense_Mutation p.V72L 0.19 tolerated(0.44) benign(0.003) TCGA-DU-8165-01 7 93065307 93065307 C T CALCR Missense_Mutation p.G403E 0.16 tolerated(0.31) probably_damaging(0.978) TCGA-DU-8165-01 7 97922907 97922907 C T BAIAP2L1 Missense_Mutation p.G488R 0.23 deleterious(0) benign(0.253) TCGA-DU-8165-01 8 119634040 119634041 - A SAMD12 Intron 0.23 TCGA-DU-8165-01 8 139793188 139793188 G A COL22A1 Silent p.D544D 0.35 TCGA-DU-8165-01 8 77617899 77617899 T G ZFHX4 Missense_Mutation p.S526A 0.31 benign(0.198) TCGA-DU-8165-01 8 99019780 99019780 T G MATN2 Missense_Mutation p.C508W 0.33 deleterious(0) probably_damaging(1) TCGA-DU-8165-01 9 104341582 104341582 C G GRIN3A Missense_Mutation p.G943R 0.05 deleterious(0.01) possibly_damaging(0.682) TCGA-DU-8165-01 9 90500087 90500090 CTTC TTT SPATA31E1 Frame_Shift_Del p.L229Ffs*3 0.18 TCGA-DU-8165-01 9 90534221 90534221 A T SPATA31C1 RNA 0.24 TCGA-DU-8165-01 X 114953505 114953505 G A RP1-241P17.4 Silent p.N15N 0.15 TCGA-DU-8165-01 X 12938644 12938644 C T TLR8 Silent p.F495F 0.10 TCGA-DU-8165-01 X 131762858 131762858 T A HS6ST2 Missense_Mutation p.N444I 0.19 deleterious(0) probably_damaging(0.998) TCGA-DU-8165-01 X 19955647 19955647 A C CXorf23 Missense_Mutation p.D583E 0.20 deleterious(0.03) benign(0.026) TCGA-DU-8165-01 X 37027101 37027101 G A FAM47C Silent p.P206P 0.27 TCGA-DU-8165-01 X 53584202 53584202 C A HUWE1 Intron 0.15 TCGA-DU-8165-01 X 69421805 69421805 G A DGAT2L6 Missense_Mutation p.V180M 0.14 deleterious(0) probably_damaging(1) TCGA-DU-8165-01 X 99931048 99931048 C A SYTL4 Missense_Mutation p.A665S 0.20 deleterious(0.04) benign(0.383) TCGA-DU-8166-01 10 98924609 98924609 T C SLIT1 Missense_Mutation p.N79S 0.48 tolerated(0.49) benign(0.054) TCGA-DU-8166-01 11 128840324 128840324 C T ARHGAP32 Missense_Mutation p.R1581Q 0.29 deleterious(0) probably_damaging(0.99) TCGA-DU-8166-01 11 6048480 6048480 C A OR56A1 Missense_Mutation p.S152I 0.06 tolerated(0.08) possibly_damaging(0.857) TCGA-DU-8166-01 11 73610227 73610227 G T PAAF1 Missense_Mutation p.G107C 0.04 tolerated(0.1) probably_damaging(0.998) TCGA-DU-8166-01 12 91502163 91502163 T A LUM Missense_Mutation p.R198S 0.04 deleterious(0) benign(0.028) TCGA-DU-8166-01 13 95275437 95275437 G C GPR180 Silent p.G323G 0.10 TCGA-DU-8166-01 14 21770676 21770676 C G RPGRIP1 Missense_Mutation p.P174A 0.14 deleterious(0) probably_damaging(0.958) TCGA-DU-8166-01 16 67304913 67304913 C T SLC9A5 Silent p.L831L 0.24 TCGA-DU-8166-01 17 15943763 15943763 G C NCOR1 Missense_Mutation p.T2242S 0.05 probably_damaging(0.986) TCGA-DU-8166-01 17 18064731 18064731 G A MYO15A Missense_Mutation p.V3163M 0.08 unknown(0) TCGA-DU-8166-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.86 deleterious(0) probably_damaging(0.998) TCGA-DU-8166-01 19 16973238 16973238 C T SIN3B Silent p.S378S 0.04 TCGA-DU-8166-01 19 37210750 37210750 G A ZNF567 Missense_Mutation p.R344H 0.07 tolerated(0.15) probably_damaging(0.999) TCGA-DU-8166-01 19 48305133 48305133 C T TPRX1 Missense_Mutation p.D379N 0.07 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-DU-8166-01 1 114424577 114424577 T C BCL2L15 Missense_Mutation p.T98A 0.10 tolerated(0.78) benign(0.003) TCGA-DU-8166-01 1 201972432 201972432 G T RNPEP Silent p.G498G 0.27 TCGA-DU-8166-01 1 215987173 215987173 A G USH2A Missense_Mutation p.V3215A 0.10 benign(0) TCGA-DU-8166-01 1 231403559 231403559 C T GNPAT Missense_Mutation p.R397W 0.07 deleterious(0.03) possibly_damaging(0.462) TCGA-DU-8166-01 20 30486368 30486368 A C TTLL9 Missense_Mutation p.D69A 0.37 deleterious(0.02) benign(0.024) TCGA-DU-8166-01 21 34113870 34113871 - T PAXBP1 Intron 0.12 TCGA-DU-8166-01 22 26707829 26707829 A G SEZ6L Missense_Mutation p.T593A 0.33 tolerated(0.27) possibly_damaging(0.491) TCGA-DU-8166-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-8166-01 2 241683359 241683359 C T KIF1A Missense_Mutation p.S1195N 0.12 tolerated(0.18) benign(0.258) TCGA-DU-8166-01 3 112054859 112054859 T C CD200 Missense_Mutation p.Y28H 0.05 tolerated_low_confidence(0.47) benign(0.044) TCGA-DU-8166-01 3 151164200 151164201 - T IGSF10 Frame_Shift_Ins p.M1190Nfs*23 0.11 TCGA-DU-8166-01 6 129959563 129959563 A T ARHGAP18 Silent p.A176A 0.04 TCGA-DU-8166-01 6 30138295 30138295 T C TRIM15 Missense_Mutation p.F250S 0.10 tolerated(0.19) benign(0.36) TCGA-DU-8166-01 6 74472143 74472143 G A CD109 Silent p.T265T 0.11 TCGA-DU-8166-01 7 70886066 70886066 G A WBSCR17 Missense_Mutation p.A313T 0.23 tolerated(0.53) benign(0.419) TCGA-DU-8166-01 8 22273631 22273631 C T SLC39A14 Missense_Mutation p.R329C 0.05 deleterious(0.01) possibly_damaging(0.849) TCGA-DU-8166-01 8 57125383 57125383 G T CHCHD7 5'UTR 0.29 TCGA-DU-8166-01 9 91994102 91994102 C T SEMA4D Silent p.A702A 0.06 TCGA-DU-8166-01 X 10090693 10090693 G T WWC3 Missense_Mutation p.L555F 0.03 deleterious(0.01) possibly_damaging(0.851) TCGA-DU-8166-01 X 134303695 134303695 G C CT55 Silent p.T34T 0.34 TCGA-DU-8166-01 X 138689854 138689854 T G MCF2 Missense_Mutation p.K572Q 0.08 tolerated(0.07) benign(0.082) TCGA-DU-8166-01 X 37029677 37029677 T A FAM47C 3'UTR 0.50 TCGA-DU-8166-01 X 47315320 47315320 C A ZNF41 Missense_Mutation p.G99C 0.10 deleterious(0.01) possibly_damaging(0.621) TCGA-DU-8166-01 X 76940087 76940087 T C ATRX Splice_Site p.X221_splice 0.31 TCGA-DU-8167-01 10 16528411 16528411 G A PTER Missense_Mutation p.G165S 0.14 deleterious(0) probably_damaging(1) TCGA-DU-8167-01 10 29811448 29811448 C G SVIL Missense_Mutation p.E1094Q 0.11 deleterious_low_confidence(0.02) benign(0.21) TCGA-DU-8167-01 10 76803652 76803652 G A DUPD1 Silent p.Y108Y 0.14 TCGA-DU-8167-01 11 113233185 113233185 G A TTC12 Silent p.L559L 0.13 TCGA-DU-8167-01 12 123834923 123834923 G A SBNO1 Silent p.D22D 0.03 TCGA-DU-8167-01 12 133196268 133196268 G A P2RX2 Missense_Mutation p.G105S 0.18 tolerated(0.11) probably_damaging(0.918) TCGA-DU-8167-01 13 103287941 103287941 G A TPP2 Silent p.L466L 0.06 TCGA-DU-8167-01 13 103287990 103287990 G C TPP2 Missense_Mutation p.E483Q 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-DU-8167-01 13 33017399 33017399 C T N4BP2L2 Silent p.S425S 0.23 TCGA-DU-8167-01 14 105639344 105639344 A G NUDT14 3'UTR 0.25 TCGA-DU-8167-01 14 23058038 23058038 A C DAD1 Missense_Mutation p.I9S 0.31 tolerated(0.11) benign(0.197) TCGA-DU-8167-01 14 62014584 62014584 C T RP11-47I22.4 Missense_Mutation p.P134S 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-DU-8167-01 14 71445338 71445338 G - PCNX Frame_Shift_Del p.E763Kfs*52 0.11 TCGA-DU-8167-01 14 79746731 79746731 G T NRXN3 Intron 0.04 TCGA-DU-8167-01 14 94404157 94404157 G A ASB2 Missense_Mutation p.A553V 0.19 deleterious(0.03) possibly_damaging(0.754) TCGA-DU-8167-01 15 20170154 20170154 A G IGHV1OR15-9 Missense_Mutation p.S40P 0.46 deleterious(0) probably_damaging(0.998) TCGA-DU-8167-01 15 69348973 69348973 G A NOX5 Silent p.L745L 0.06 TCGA-DU-8167-01 16 2835019 2835019 T C PRSS33 Missense_Mutation p.H223R 0.24 tolerated(0.8) benign(0.004) TCGA-DU-8167-01 16 66612848 66612848 C T CMTM1 Missense_Mutation p.P269S 0.19 tolerated(0.68) benign(0.004) TCGA-DU-8167-01 17 40705302 40705302 C T HSD17B1 Silent p.D86D 0.09 TCGA-DU-8167-01 17 48773483 48773483 G C ANKRD40 Missense_Mutation p.Q328E 0.20 deleterious(0) benign(0.011) TCGA-DU-8167-01 17 73753676 73753676 C T ITGB4 3'UTR 0.28 TCGA-DU-8167-01 17 7572963 7572963 T - TP53 Frame_Shift_Del p.K382Nfs*40 0.27 TCGA-DU-8167-01 17 7578413 7578413 C G TP53 Missense_Mutation p.V173L 0.48 deleterious(0) probably_damaging(0.998) TCGA-DU-8167-01 17 7976156 7976156 T C ALOX12B Missense_Mutation p.N680S 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-DU-8167-01 17 7976179 7976179 G A ALOX12B Silent p.I672I 0.07 TCGA-DU-8167-01 19 19162910 19162910 C T ARMC6 Silent p.D253D 0.23 TCGA-DU-8167-01 19 42213763 42213763 C T CEA Missense_Mutation p.R77C 0.27 deleterious(0.05) probably_damaging(0.95) TCGA-DU-8167-01 19 55741827 55741827 C T PPP6R1 3'UTR 0.25 TCGA-DU-8167-01 1 100133315 100133315 A G PALMD Missense_Mutation p.I82V 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-DU-8167-01 1 120438457 120438457 C G ADAM30 Missense_Mutation p.G168A 0.41 tolerated(0.73) benign(0.021) TCGA-DU-8167-01 1 153659546 153659546 A G NPR1 Missense_Mutation p.T640A 0.04 deleterious(0.05) benign(0.012) TCGA-DU-8167-01 1 22162039 22162039 T C HSPG2 Missense_Mutation p.I3483V 0.22 benign(0.002) TCGA-DU-8167-01 1 247769424 247769424 C T OR2G3 Silent p.C179C 0.18 TCGA-DU-8167-01 1 26135530 26135530 G A SEPN1 Missense_Mutation p.R254Q 0.12 tolerated(0.37) benign(0.003) TCGA-DU-8167-01 20 17716423 17716423 C T BANF2 Silent p.H87H 0.16 TCGA-DU-8167-01 20 47592595 47592595 G A ARFGEF2 Missense_Mutation p.G606D 0.14 tolerated(0.59) benign(0.003) TCGA-DU-8167-01 20 49225174 49225174 C T FAM65C Silent p.T258T 0.06 TCGA-DU-8167-01 22 36907606 36907606 G A EIF3D Missense_Mutation p.T526I 0.14 deleterious(0) probably_damaging(0.964) TCGA-DU-8167-01 2 160832717 160832717 A G PLA2R1 Silent p.Y819Y 0.31 TCGA-DU-8167-01 2 173955739 173955739 A G MLTK 5'UTR 0.19 TCGA-DU-8167-01 2 176988939 176988939 C A HOXD9 3'UTR 0.06 TCGA-DU-8167-01 2 182339701 182339701 G C ITGA4 Missense_Mutation p.E112Q 0.04 tolerated(0.24) benign(0.048) TCGA-DU-8167-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-8167-01 2 21250764 21250764 G A APOB Missense_Mutation p.P668L 0.20 probably_damaging(0.999) TCGA-DU-8167-01 2 29287763 29287763 G A C2orf71 Missense_Mutation p.A1280V 0.29 tolerated(0.07) benign(0.381) TCGA-DU-8167-01 4 128851943 128851943 T C MFSD8 Missense_Mutation p.Y298C 0.05 deleterious(0) probably_damaging(0.997) TCGA-DU-8167-01 4 170428878 170428878 G A NEK1 Silent p.I633I 0.13 TCGA-DU-8167-01 4 69343128 69343128 C A TMPRSS11E Missense_Mutation p.T250K 0.13 tolerated(0.08) benign(0.028) TCGA-DU-8167-01 4 71522083 71522083 T C IGJ Missense_Mutation p.E148G 0.14 tolerated(0.13) benign(0.075) TCGA-DU-8167-01 5 107197443 107197443 T C FBXL17 Missense_Mutation p.N695S 0.06 tolerated_low_confidence(0.09) benign(0.026) TCGA-DU-8167-01 5 158753714 158753714 A G IL12B Missense_Mutation p.L26P 0.12 deleterious(0) probably_damaging(0.996) TCGA-DU-8167-01 5 37351324 37351324 T C NUP155 Missense_Mutation p.K231E 0.13 deleterious(0) possibly_damaging(0.794) TCGA-DU-8167-01 5 80366346 80366346 A G RASGRF2 Silent p.R193R 0.29 TCGA-DU-8167-01 5 94043157 94043157 T C MCTP1 3'UTR 0.17 TCGA-DU-8167-01 6 158914678 158914678 C T TULP4 Missense_Mutation p.P569S 0.05 tolerated(0.05) probably_damaging(0.94) TCGA-DU-8167-01 6 25779395 25779395 G A SLC17A4 Silent p.E491E 0.32 TCGA-DU-8167-01 6 30514076 30514076 G A GNL1 Missense_Mutation p.H533Y 0.28 deleterious(0) possibly_damaging(0.904) TCGA-DU-8167-01 6 31644773 31644773 G A LY6G5C Silent p.F138F 0.13 TCGA-DU-8167-01 6 33260297 33260297 T C RGL2 Missense_Mutation p.S678G 0.12 tolerated(0.1) benign(0.171) TCGA-DU-8167-01 6 35434142 35434142 C A FANCE 3'UTR 0.08 TCGA-DU-8167-01 6 46847698 46847698 A G GPR116 Missense_Mutation p.L298S 0.13 tolerated(0.42) benign(0.068) TCGA-DU-8167-01 7 16650366 16650366 T C ANKMY2 Missense_Mutation p.N185S 0.15 tolerated(0.14) benign(0.186) TCGA-DU-8167-01 8 124266694 124266694 A G ZHX1 Missense_Mutation p.M498T 0.08 deleterious(0) possibly_damaging(0.809) TCGA-DU-8167-01 8 2048769 2048769 C T MYOM2 Silent p.F848F 0.14 TCGA-DU-8167-01 8 53852887 53852887 C T NPBWR1 Silent p.A140A 0.15 TCGA-DU-8167-01 9 116840418 116840418 C T AMBP Silent p.T24T 0.05 TCGA-DU-8167-01 9 137300950 137300950 G A RXRA Missense_Mutation p.G199S 0.07 deleterious(0) probably_damaging(1) TCGA-DU-8167-01 9 17747099 17747099 C T SH3GL2 Silent p.T27T 0.08 TCGA-DU-8167-01 9 32436370 32436370 C T ACO1 Missense_Mutation p.T741I 0.03 deleterious(0) probably_damaging(0.996) TCGA-DU-8167-01 9 74359988 74359988 A G TMEM2 Missense_Mutation p.I327T 0.05 tolerated(0.19) benign(0.028) TCGA-DU-8167-01 9 77435241 77435241 C T TRPM6 Silent p.E371E 0.21 TCGA-DU-8167-01 9 80881577 80881577 T C CEP78 Missense_Mutation p.S690P 0.12 deleterious_low_confidence(0.04) benign(0.267) TCGA-DU-8167-01 X 103267993 103267993 G T H2BFWT Missense_Mutation p.S80R 0.06 deleterious(0.05) probably_damaging(0.912) TCGA-DU-8167-01 X 111024435 111024435 C T TRPC5 Splice_Site p.X701_splice 0.19 TCGA-DU-8167-01 X 123785903 123785903 C T TENM1 Silent p.Q480Q 0.06 TCGA-DU-8167-01 X 34962576 34962576 G A FAM47B Missense_Mutation p.R543H 0.07 tolerated(0.33) benign(0.002) TCGA-DU-8167-01 X 48418056 48418056 C T TBC1D25 Missense_Mutation p.R254W 0.39 deleterious(0) probably_damaging(1) TCGA-DU-8167-01 X 48545245 48545245 A T WAS Missense_Mutation p.Y212F 0.10 tolerated(0.25) probably_damaging(0.997) TCGA-DU-8167-01 X 48887332 48887332 C T TFE3 3'UTR 0.17 TCGA-DU-8167-01 X 50377586 50377586 G - SHROOM4 Frame_Shift_Del p.P496Hfs*163 0.16 TCGA-DU-8167-01 X 55042060 55042060 C T ALAS2 Silent p.G373G 0.23 TCGA-DU-8167-01 X 76909629 76909629 G A ATRX Nonsense_Mutation p.R1426* 0.11 TCGA-DU-8168-01 10 127668874 127668874 A G FANK1 Missense_Mutation p.D53G 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-DU-8168-01 10 132944858 132944861 CAGA - TCERG1L Frame_Shift_Del p.V366Gfs*7 0.25 TCGA-DU-8168-01 10 79773462 79773462 G T POLR3A Missense_Mutation p.N506K 0.38 deleterious(0) probably_damaging(0.998) TCGA-DU-8168-01 11 1101611 1101611 G A MUC2 Missense_Mutation p.E2542K 0.48 unknown(0) TCGA-DU-8168-01 11 18269491 18269491 G A SAA2 Missense_Mutation p.S23L 0.40 deleterious(0.04) benign(0.245) TCGA-DU-8168-01 11 48149530 48149530 A G PTPRJ Missense_Mutation p.N431S 0.45 tolerated(0.12) benign(0.079) TCGA-DU-8168-01 11 7081199 7081199 C T NLRP14 Missense_Mutation p.T903M 0.08 tolerated(0.21) benign(0.175) TCGA-DU-8168-01 11 755990 755990 G A TALDO1 Missense_Mutation p.R70Q 0.08 tolerated(0.08) benign(0.019) TCGA-DU-8168-01 11 85375242 85375244 CTT - CREBZF In_Frame_Del p.K226del 0.31 TCGA-DU-8168-01 12 53586167 53586169 AAG - ITGB7 In_Frame_Del p.F700del 0.26 TCGA-DU-8168-01 12 56495375 56495377 GAA - ERBB3 In_Frame_Del p.E1191del 0.10 TCGA-DU-8168-01 12 56827689 56827689 C G TIMELESS Missense_Mutation p.R40P 0.09 deleterious(0) probably_damaging(0.999) TCGA-DU-8168-01 12 57398076 57398076 G A ZBTB39 Missense_Mutation p.T209I 0.14 deleterious(0.03) benign(0.001) TCGA-DU-8168-01 12 8376782 8376782 G A FAM90A1 Silent p.G51G 0.44 TCGA-DU-8168-01 12 86373329 86373329 A T MGAT4C Missense_Mutation p.I392N 0.19 deleterious(0) possibly_damaging(0.759) TCGA-DU-8168-01 14 106994102 106994102 C A IGHV3-48 Silent p.V21V 0.16 TCGA-DU-8168-01 15 32929682 32929682 A G ARHGAP11A Missense_Mutation p.Q903R 0.43 tolerated(0.11) benign(0.003) TCGA-DU-8168-01 15 65443196 65443198 CTT - CLPX In_Frame_Del p.E622del 0.36 TCGA-DU-8168-01 15 86262400 86262400 A C AKAP13 Missense_Mutation p.Q2036P 0.39 deleterious(0.04) possibly_damaging(0.673) TCGA-DU-8168-01 16 1797211 1797211 G T MAPK8IP3 Missense_Mutation p.R309L 0.37 tolerated(0.19) benign(0.149) TCGA-DU-8168-01 16 31342962 31342964 CTT - ITGAM In_Frame_Del p.F1134del 0.24 TCGA-DU-8168-01 16 67701892 67701892 A G C16orf86 Silent p.P148P 0.15 TCGA-DU-8168-01 16 68026419 68026419 G A DPEP2 Silent p.G128G 0.41 TCGA-DU-8168-01 17 33328319 33328319 C T LIG3 Missense_Mutation p.S792L 0.38 tolerated(0.07) benign(0.064) TCGA-DU-8168-01 17 33495136 33495136 C T UNC45B Missense_Mutation p.S403L 0.36 deleterious(0) possibly_damaging(0.876) TCGA-DU-8168-01 17 75208130 75208130 G A SEC14L1 Silent p.S570S 0.39 TCGA-DU-8168-01 17 76094488 76094488 G T TNRC6C Silent p.L1493L 0.51 TCGA-DU-8168-01 18 14179433 14179433 G C ANKRD20A5P RNA 0.18 TCGA-DU-8168-01 18 28934739 28934739 A G DSG1 Silent p.S860S 0.08 TCGA-DU-8168-01 18 61570518 61570518 C T SERPINB2 Silent p.F409F 0.42 TCGA-DU-8168-01 19 12461542 12461542 G T ZNF442 Missense_Mutation p.T286N 0.07 tolerated(0.05) probably_damaging(0.951) TCGA-DU-8168-01 19 22155320 22155320 C T ZNF208 Missense_Mutation p.G839D 0.58 tolerated(0.05) unknown(0) TCGA-DU-8168-01 19 42795593 42795594 TG - CIC Frame_Shift_Del p.V892Tfs*38 0.49 TCGA-DU-8168-01 19 5131427 5131427 G A KDM4B Silent p.E552E 0.27 TCGA-DU-8168-01 19 9058837 9058837 G T MUC16 Missense_Mutation p.P9537T 0.10 unknown(0) TCGA-DU-8168-01 1 16357066 16357066 G A CLCNKA Missense_Mutation p.A507T 0.08 deleterious(0.03) benign(0.41) TCGA-DU-8168-01 1 206765096 206765097 AA - EIF2D 3'UTR 0.25 TCGA-DU-8168-01 1 248525565 248525565 A T OR2T4 Missense_Mutation p.E228V 0.25 deleterious(0) probably_damaging(0.976) TCGA-DU-8168-01 1 78433338 78433339 TG - FUBP1 Frame_Shift_Del p.Q88Vfs*33 0.47 TCGA-DU-8168-01 20 45354099 45354099 G A SLC2A10 Missense_Mutation p.G142S 0.04 tolerated(0.28) probably_damaging(0.91) TCGA-DU-8168-01 22 39824142 39824142 G A TAB1 Missense_Mutation p.A421T 0.10 tolerated(0.8) benign(0.001) TCGA-DU-8168-01 2 160053205 160053205 T C TANC1 Silent p.T1022T 0.43 TCGA-DU-8168-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-8168-01 2 242707146 242707146 A G D2HGDH Missense_Mutation p.N443S 0.41 deleterious(0) probably_damaging(0.945) TCGA-DU-8168-01 3 129290353 129290353 G A PLXND1 Missense_Mutation p.T1112M 0.39 tolerated(0.08) benign(0.188) TCGA-DU-8168-01 3 133191307 133191307 C T BFSP2 Missense_Mutation p.A381V 0.38 tolerated(0.74) benign(0.023) TCGA-DU-8168-01 3 138738764 138738764 C T PRR23B Missense_Mutation p.R247H 0.29 tolerated(0.07) benign(0.013) TCGA-DU-8168-01 3 178916938 178916940 GAA - PIK3CA In_Frame_Del p.E110del 0.43 TCGA-DU-8168-01 3 52420205 52420205 G A DNAH1 Silent p.R2885R 0.43 TCGA-DU-8168-01 3 52661373 52661376 TCTT - PBRM1 Frame_Shift_Del p.K485Sfs*14 0.67 TCGA-DU-8168-01 4 155665633 155665633 A G LRAT Missense_Mutation p.E52G 0.04 deleterious(0) probably_damaging(0.958) TCGA-DU-8168-01 4 174292617 174292619 AGA - SAP30 In_Frame_Del p.K97del 0.36 TCGA-DU-8168-01 4 183594354 183594354 A G TENM3 Silent p.L436L 0.13 TCGA-DU-8168-01 4 185650178 185650178 T C CENPU Silent p.Q36Q 0.11 TCGA-DU-8168-01 4 85715705 85715708 CAAT - WDFY3 Frame_Shift_Del p.I1151Ffs*48 0.27 TCGA-DU-8168-01 5 118479596 118479598 ATT - DMXL1 In_Frame_Del p.I814del 0.42 TCGA-DU-8168-01 5 118810104 118810106 GAA - HSD17B4 In_Frame_Del p.E103del 0.46 TCGA-DU-8168-01 5 149927941 149927941 C T NDST1 Silent p.H769H 0.35 TCGA-DU-8168-01 5 150945298 150945298 C T FAT2 Silent p.G1065G 0.05 TCGA-DU-8168-01 5 151239373 151239373 C T GLRA1 Missense_Mutation p.R150Q 0.34 tolerated(0.24) benign(0.022) TCGA-DU-8168-01 5 156746913 156746915 GAA - CYFIP2 In_Frame_Del p.K477del 0.14 TCGA-DU-8168-01 5 79335903 79335903 T G THBS4 Missense_Mutation p.F31C 0.43 deleterious(0.01) possibly_damaging(0.514) TCGA-DU-8168-01 6 114277817 114277818 AA - HDAC2 Frame_Shift_Del p.F108* 0.17 TCGA-DU-8168-01 6 116574192 116574195 GAAA - TSPYL4 Frame_Shift_Del p.L326Pfs*38 0.09 TCGA-DU-8168-01 6 131917229 131917229 A G MED23 Silent p.Y951Y 0.11 TCGA-DU-8168-01 6 31832672 31832674 AAG - SLC44A4 In_Frame_Del p.F618del 0.22 TCGA-DU-8168-01 6 7583354 7583354 C A DSP Silent p.T1953T 0.47 TCGA-DU-8168-01 6 87971546 87971546 T G ZNF292 3'UTR 0.52 TCGA-DU-8168-01 7 29519880 29519881 TT - CHN2 Intron 0.11 TCGA-DU-8168-01 7 44799776 44799776 C T ZMIZ2 Silent p.G340G 0.11 TCGA-DU-8168-01 7 81372731 81372731 C T HGF Missense_Mutation p.R268K 0.52 tolerated(0.05) benign(0.261) TCGA-DU-8168-01 8 133764099 133764099 G A TMEM71 Silent p.C82C 0.40 TCGA-DU-8168-01 8 42587448 42587448 C T CHRNB3 Missense_Mutation p.P333L 0.04 deleterious(0.02) probably_damaging(1) TCGA-DU-8168-01 8 55371662 55371662 G A SOX17 Missense_Mutation p.V118M 0.12 deleterious(0) probably_damaging(0.995) TCGA-DU-8168-01 8 69005869 69005869 C A PREX2 Missense_Mutation p.S760R 0.32 deleterious_low_confidence(0) benign(0.145) TCGA-DU-8168-01 9 139412252 139412254 CGT - NOTCH1 In_Frame_Del p.D464del 0.26 TCGA-DU-8168-01 9 139413070 139413072 AGA - NOTCH1 In_Frame_Del p.F357del 0.32 TCGA-DU-8168-01 X 117959418 117959418 G A ZCCHC12 Missense_Mutation p.V71I 0.63 tolerated(0.2) benign(0.093) TCGA-DU-8168-01 X 13337542 13337542 T C ATXN3L Missense_Mutation p.D171G 0.38 deleterious(0.03) benign(0.371) TCGA-DU-8168-01 X 1409322 1409322 G A CSF2RA Missense_Mutation p.R189H 0.33 tolerated(0.49) benign(0.222) TCGA-DU-8168-01 X 41393959 41393959 G T CASK Missense_Mutation p.H768N 0.43 deleterious(0.02) probably_damaging(0.994) TCGA-DU-8168-01 X 50051784 50051784 G A CCNB3 Silent p.A205A 0.39 TCGA-DU-8168-01 X 75649858 75649858 T C MAGEE1 Missense_Mutation p.I512T 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-DU-A5TP-01 10 28378749 28378749 C T MPP7 Missense_Mutation p.R325H 0.21 deleterious(0.02) probably_damaging(0.952) TCGA-DU-A5TP-01 12 108012060 108012060 G A BTBD11 Missense_Mutation p.R786H 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-DU-A5TP-01 12 56504345 56504345 C T PA2G4 Silent p.A237A 0.42 TCGA-DU-A5TP-01 14 100551166 100551166 G A EVL Missense_Mutation p.V52I 0.46 deleterious(0) probably_damaging(0.994) TCGA-DU-A5TP-01 14 47389358 47389358 C A MDGA2 Missense_Mutation p.A699S 0.11 deleterious(0.02) benign(0.371) TCGA-DU-A5TP-01 15 28273113 28273113 A T OCA2 Missense_Mutation p.L140Q 0.08 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DU-A5TP-01 15 28473408 28473408 T C HERC2 Missense_Mutation p.N1807S 0.09 benign(0.027) TCGA-DU-A5TP-01 15 91437242 91437242 C T FES Silent p.P760P 0.38 TCGA-DU-A5TP-01 16 10551310 10551310 G T ATF7IP2 Nonsense_Mutation p.E426* 0.10 TCGA-DU-A5TP-01 16 23678418 23678418 G A DCTN5 Missense_Mutation p.V168I 0.05 tolerated(0.38) benign(0.002) TCGA-DU-A5TP-01 16 684607 684607 C T C16orf13 Silent p.P179P 0.39 TCGA-DU-A5TP-01 17 3656701 3656701 C T ITGAE Silent p.E517E 0.13 TCGA-DU-A5TP-01 17 43922533 43922533 G T SPPL2C Silent p.R87R 0.16 TCGA-DU-A5TP-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.85 deleterious(0) probably_damaging(0.997) TCGA-DU-A5TP-01 19 17313045 17313045 A C MYO9B Missense_Mutation p.N1590T 0.12 deleterious(0) probably_damaging(0.999) TCGA-DU-A5TP-01 20 3027057 3027057 A G MRPS26 Missense_Mutation p.E84G 0.32 deleterious(0) probably_damaging(0.975) TCGA-DU-A5TP-01 21 45712878 45712878 C - AIRE Frame_Shift_Del p.P368Rfs*10 0.30 TCGA-DU-A5TP-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A5TP-01 2 26680761 26680761 C T OTOF 3'UTR 0.35 TCGA-DU-A5TP-01 3 25833094 25833094 C T OXSM Nonsense_Mutation p.R195* 0.14 TCGA-DU-A5TP-01 4 155530846 155530846 T A FGG Missense_Mutation p.N201I 0.46 tolerated(0.45) benign(0.081) TCGA-DU-A5TP-01 4 9784116 9784116 C T DRD5 Missense_Mutation p.R155C 0.09 deleterious(0.03) probably_damaging(0.937) TCGA-DU-A5TP-01 5 160758095 160758095 T C GABRB2 Missense_Mutation p.H291R 0.14 tolerated(0.12) probably_damaging(0.997) TCGA-DU-A5TP-01 5 35954579 35954579 A G UGT3A1 Missense_Mutation p.Y433H 0.09 deleterious(0) probably_damaging(0.992) TCGA-DU-A5TP-01 6 25261508 25261508 G A RP3-522P13.3 RNA 0.39 TCGA-DU-A5TP-01 7 107398758 107398758 A G CBLL1 Missense_Mutation p.N204S 0.42 tolerated(0.75) benign(0.002) TCGA-DU-A5TP-01 7 135048807 135048807 A G CNOT4 Missense_Mutation p.S547P 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-DU-A5TP-01 7 143175080 143175080 G T TAS2R41 Missense_Mutation p.G39C 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-DU-A5TP-01 7 79818476 79818476 A G GNAI1 Missense_Mutation p.I78V 0.19 tolerated(0.55) benign(0.009) TCGA-DU-A5TP-01 7 94940783 94940783 G T PON1 Silent p.I159I 0.36 TCGA-DU-A5TP-01 8 120768315 120768315 T G TAF2 Missense_Mutation p.T937P 0.09 deleterious(0.05) benign(0.418) TCGA-DU-A5TP-01 9 117826102 117826102 T A TNC Missense_Mutation p.T1245S 0.16 tolerated(0.75) benign(0.155) TCGA-DU-A5TP-01 X 106083910 106083910 T C TBC1D8B Silent p.N505N 0.48 TCGA-DU-A5TP-01 X 20156713 20156713 C T EIF1AX Missense_Mutation p.G15D 0.72 deleterious(0) unknown(0) TCGA-DU-A5TP-01 X 76938407 76938407 G A ATRX Nonsense_Mutation p.R781* 0.78 TCGA-DU-A5TR-01 10 123673408 123673408 C A ATE1 Missense_Mutation p.R78S 0.08 deleterious(0) probably_damaging(0.991) TCGA-DU-A5TR-01 11 134253627 134253627 C A B3GAT1 Missense_Mutation p.V190L 0.29 deleterious(0) benign(0.255) TCGA-DU-A5TR-01 11 46563768 46563768 C T AMBRA1 Nonsense_Mutation p.W510* 0.40 TCGA-DU-A5TR-01 11 7960884 7960884 A C OR10A3 Missense_Mutation p.F62V 0.53 deleterious(0) probably_damaging(0.999) TCGA-DU-A5TR-01 12 123649912 123649912 G C MPHOSPH9 Missense_Mutation p.L750V 0.07 deleterious(0.01) benign(0.006) TCGA-DU-A5TR-01 12 22643145 22643145 C A C2CD5 Missense_Mutation p.V424F 0.27 deleterious(0) probably_damaging(0.969) TCGA-DU-A5TR-01 12 7045025 7045025 G C ATN1 Missense_Mutation p.E199Q 0.05 probably_damaging(0.968) TCGA-DU-A5TR-01 14 45403339 45403339 T C KLHL28 Missense_Mutation p.Y441C 0.32 tolerated(0.11) probably_damaging(1) TCGA-DU-A5TR-01 15 42600494 42600494 T C GANC Missense_Mutation p.S234P 0.36 possibly_damaging(0.864) TCGA-DU-A5TR-01 17 5442862 5442862 C T NLRP1 Missense_Mutation p.A915T 0.12 tolerated(0.14) possibly_damaging(0.566) TCGA-DU-A5TR-01 17 67189276 67189276 G C ABCA10 Missense_Mutation p.F585L 0.21 tolerated(0.11) benign(0.02) TCGA-DU-A5TR-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.54 deleterious(0) probably_damaging(0.998) TCGA-DU-A5TR-01 19 1556792 1556792 C T MEX3D Silent p.S242S 0.27 TCGA-DU-A5TR-01 19 16860397 16860397 G A NWD1 Missense_Mutation p.R315H 0.37 tolerated(0.17) possibly_damaging(0.542) TCGA-DU-A5TR-01 19 58264700 58264700 A G AC003006.7 Missense_Mutation p.T68A 0.29 tolerated(0.06) benign(0.061) TCGA-DU-A5TR-01 1 12919085 12919085 A G PRAMEF2 Missense_Mutation p.H74R 0.09 deleterious(0.02) possibly_damaging(0.453) TCGA-DU-A5TR-01 1 31901854 31901854 G T SERINC2 Missense_Mutation p.Q279H 0.04 deleterious(0) probably_damaging(1) TCGA-DU-A5TR-01 1 86898153 86898153 T A CLCA2 Missense_Mutation p.I229N 0.31 deleterious(0) possibly_damaging(0.819) TCGA-DU-A5TR-01 1 9099884 9099884 C T SLC2A5 Missense_Mutation p.G287D 0.28 deleterious(0.01) probably_damaging(0.961) TCGA-DU-A5TR-01 20 56093842 56093842 C T CTCFL Missense_Mutation p.C344Y 0.04 deleterious(0) probably_damaging(1) TCGA-DU-A5TR-01 21 45953633 45953633 T C TSPEAR Silent p.T159T 0.30 TCGA-DU-A5TR-01 2 11273476 11273476 A C C2orf50 Missense_Mutation p.T6P 0.20 tolerated(0.13) benign(0.007) TCGA-DU-A5TR-01 2 128408985 128408985 G A GPR17 Missense_Mutation p.E254K 0.34 deleterious(0.01) probably_damaging(0.98) TCGA-DU-A5TR-01 2 175612728 175612728 A G CHRNA1 3'UTR 0.55 TCGA-DU-A5TR-01 2 179436446 179436446 C T TTN Missense_Mutation p.V24805I 0.27 TCGA-DU-A5TR-01 2 201527642 201527642 G A AOX1 Missense_Mutation p.G1165R 0.48 deleterious(0.01) probably_damaging(1) TCGA-DU-A5TR-01 2 209113113 209113113 G T IDH1 Missense_Mutation p.R132S 0.43 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DU-A5TR-01 2 85051212 85051212 G A TRABD2A Missense_Mutation p.P351L 0.20 tolerated(0.41) benign(0.003) TCGA-DU-A5TR-01 3 129251555 129251555 G A RHO Silent p.A292A 0.30 TCGA-DU-A5TR-01 3 182733058 182733061 TAAT - MCCC1 3'UTR 0.40 TCGA-DU-A5TR-01 3 30729914 30729914 C T TGFBR2 Missense_Mutation p.R504W 0.25 deleterious(0.03) probably_damaging(0.932) TCGA-DU-A5TR-01 3 37559044 37559044 C T ITGA9 Missense_Mutation p.A362V 0.27 deleterious(0) probably_damaging(0.999) TCGA-DU-A5TR-01 3 5025544 5025544 T C BHLHE40 3'UTR 0.22 TCGA-DU-A5TR-01 4 38799264 38799264 T C TLR1 Missense_Mutation p.M397V 0.39 deleterious(0) probably_damaging(0.986) TCGA-DU-A5TR-01 5 178581152 178581152 T C ADAMTS2 Missense_Mutation p.D427G 0.36 deleterious(0.02) benign(0.311) TCGA-DU-A5TR-01 5 60241193 60241193 G A NDUFAF2 Silent p.Q37Q 0.07 TCGA-DU-A5TR-01 5 66479020 66479020 C T CD180 Missense_Mutation p.A551T 0.32 deleterious(0.03) probably_damaging(0.968) TCGA-DU-A5TR-01 5 68467121 68467121 A G CCNB1 Missense_Mutation p.M130V 0.29 tolerated(0.11) benign(0.016) TCGA-DU-A5TR-01 6 144724310 144724310 G A UTRN Missense_Mutation p.R44Q 0.46 tolerated(1) probably_damaging(0.945) TCGA-DU-A5TR-01 7 23314001 23314001 G A GPNMB 3'UTR 0.20 TCGA-DU-A5TR-01 7 50513439 50513439 G C FIGNL1 Missense_Mutation p.S516C 0.22 deleterious(0) probably_damaging(0.99) TCGA-DU-A5TR-01 7 64838786 64838786 C G ZNF92 5'UTR 0.26 TCGA-DU-A5TR-01 7 72717707 72717707 G C NSUN5 Missense_Mutation p.H392Q 0.16 tolerated(0.21) benign(0.054) TCGA-DU-A5TR-01 8 110477192 110477192 G A PKHD1L1 Missense_Mutation p.G2711S 0.30 deleterious(0.05) possibly_damaging(0.706) TCGA-DU-A5TR-01 8 62460709 62460709 C T ASPH Missense_Mutation p.R562H 0.36 deleterious(0) probably_damaging(0.987) TCGA-DU-A5TR-01 9 130575671 130575671 A G FPGS Missense_Mutation p.S518G 0.30 deleterious(0.02) benign(0.011) TCGA-DU-A5TR-01 9 139412326 139412326 C G NOTCH1 Missense_Mutation p.C440S 0.27 deleterious(0) probably_damaging(0.992) TCGA-DU-A5TR-01 9 6253587 6253587 C T IL33 Missense_Mutation p.P169S 0.26 tolerated(0.41) benign(0.01) TCGA-DU-A5TR-01 X 76875911 76875911 T C ATRX Missense_Mutation p.R1742G 0.81 probably_damaging(0.999) TCGA-DU-A5TS-01 10 104353823 104353823 G T SUFU Splice_Site p.X252_splice 0.32 TCGA-DU-A5TS-01 10 16547111 16547111 A G PTER Missense_Mutation p.Q264R 0.43 deleterious(0.01) possibly_damaging(0.673) TCGA-DU-A5TS-01 10 37508226 37508226 G T ANKRD30A Nonsense_Mutation p.E1140* 0.28 TCGA-DU-A5TS-01 10 61848084 61848084 G A ANK3 Missense_Mutation p.R1121C 0.11 probably_damaging(0.999) TCGA-DU-A5TS-01 11 76912498 76912498 G A MYO7A Missense_Mutation p.E1620K 0.32 deleterious(0.04) benign(0.176) TCGA-DU-A5TS-01 12 123889487 123889487 G A SETD8 Silent p.R238R 0.40 TCGA-DU-A5TS-01 12 132392064 132392064 G A ULK1 Missense_Mutation p.D102N 0.11 deleterious(0.04) probably_damaging(0.993) TCGA-DU-A5TS-01 12 50383973 50383973 A G RACGAP1 3'UTR 0.22 TCGA-DU-A5TS-01 12 57112865 57112865 G C NACA Intron 0.45 TCGA-DU-A5TS-01 12 6636155 6636155 G C NCAPD2 Missense_Mutation p.V945L 0.55 deleterious(0.04) benign(0.179) TCGA-DU-A5TS-01 12 78415595 78415595 A G NAV3 Missense_Mutation p.D659G 0.43 deleterious(0) benign(0.167) TCGA-DU-A5TS-01 12 86199245 86199245 A G RASSF9 Silent p.D181D 0.13 TCGA-DU-A5TS-01 13 32360543 32360543 C T RXFP2 Missense_Mutation p.T318M 0.36 tolerated(0.21) benign(0.01) TCGA-DU-A5TS-01 14 20940627 20940627 C T PNP Nonsense_Mutation p.R58* 0.47 TCGA-DU-A5TS-01 15 102516460 102516460 G T WASH3P 3'Flank 0.09 TCGA-DU-A5TS-01 16 2881941 2881941 C A ZG16B Nonsense_Mutation p.Y136* 0.08 TCGA-DU-A5TS-01 16 58001075 58001075 G T CNGB1 Missense_Mutation p.P39Q 0.38 deleterious_low_confidence(0.04) benign(0.014) TCGA-DU-A5TS-01 16 89357057 89357057 C T ANKRD11 Missense_Mutation p.D193N 0.14 probably_damaging(0.957) TCGA-DU-A5TS-01 16 89357151 89357151 C T ANKRD11 Silent p.V161V 0.14 TCGA-DU-A5TS-01 17 33289722 33289722 G A ZNF830 3'UTR 0.33 TCGA-DU-A5TS-01 17 40065858 40065858 G A ACLY Silent p.A147A 0.12 TCGA-DU-A5TS-01 17 43922307 43922309 TCC - SPPL2C In_Frame_Del p.L15del 0.23 TCGA-DU-A5TS-01 18 28739449 28739449 C G DSC1 Missense_Mutation p.R36P 0.42 deleterious(0.02) benign(0.321) TCGA-DU-A5TS-01 19 35524708 35524708 G A SCN1B Nonsense_Mutation p.W171* 0.38 TCGA-DU-A5TS-01 19 56421928 56421928 C T NLRP13 Splice_Site p.X761_splice 0.27 TCGA-DU-A5TS-01 1 114443970 114443970 G A AP4B1 Missense_Mutation p.R169C 0.18 deleterious(0) probably_damaging(0.998) TCGA-DU-A5TS-01 1 156144932 156144932 G T SEMA4A Missense_Mutation p.C497F 0.10 deleterious(0) probably_damaging(0.998) TCGA-DU-A5TS-01 1 160321849 160321851 TAG - NCSTN In_Frame_Del p.S284del 0.25 TCGA-DU-A5TS-01 1 175957522 175957523 CA - RFWD2 Frame_Shift_Del p.W625Efs*17 0.41 TCGA-DU-A5TS-01 1 185969241 185969241 C T HMCN1 Silent p.G1313G 0.27 TCGA-DU-A5TS-01 1 207010002 207010005 GCAG - IL19 Splice_Site p.X38_splice 0.28 TCGA-DU-A5TS-01 1 233394931 233394931 C T PCNXL2 Missense_Mutation p.G226D 0.39 tolerated_low_confidence(0.51) benign(0) TCGA-DU-A5TS-01 1 897822 897822 G A KLHL17 Missense_Mutation p.V267M 0.14 deleterious(0.03) possibly_damaging(0.709) TCGA-DU-A5TS-01 21 45876675 45876675 T C LRRC3 Missense_Mutation p.C50R 0.39 deleterious(0) probably_damaging(1) TCGA-DU-A5TS-01 2 159537147 159537147 T C PKP4 Silent p.Y1179Y 0.37 TCGA-DU-A5TS-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A5TS-01 2 219619171 219619171 C T TTLL4 3'UTR 0.19 TCGA-DU-A5TS-01 2 227729609 227729609 G A RHBDD1 Missense_Mutation p.R67H 0.28 deleterious(0) probably_damaging(1) TCGA-DU-A5TS-01 2 234408535 234408535 A G USP40 Silent p.S891S 0.44 TCGA-DU-A5TS-01 2 25467457 25467457 C T DNMT3A Missense_Mutation p.C540Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-DU-A5TS-01 2 68385203 68385203 G A PNO1 Missense_Mutation p.R46H 0.09 tolerated(0.18) benign(0.001) TCGA-DU-A5TS-01 2 89442586 89442586 T C IGKV3-20 Silent p.E2E 0.31 TCGA-DU-A5TS-01 3 47047865 47047865 C T NBEAL2 Missense_Mutation p.R2354C 0.22 deleterious(0) probably_damaging(0.973) TCGA-DU-A5TS-01 3 52539710 52539710 C T STAB1 Silent p.D536D 0.30 TCGA-DU-A5TS-01 3 97868537 97868537 C T OR5H14 Missense_Mutation p.S103L 0.05 tolerated(0.12) benign(0.014) TCGA-DU-A5TS-01 6 47575765 47575765 G A CD2AP Splice_Site p.X544_splice 0.37 TCGA-DU-A5TS-01 7 6370325 6370325 C G FAM220A Missense_Mutation p.R154P 0.38 tolerated(0.06) possibly_damaging(0.519) TCGA-DU-A5TS-01 9 139726181 139726181 A G RABL6 Missense_Mutation p.N156S 0.20 tolerated(0.13) benign(0.07) TCGA-DU-A5TS-01 9 140946556 140946556 G A CACNA1B Silent p.G1241G 0.36 TCGA-DU-A5TS-01 9 2718275 2718275 G A KCNV2 Missense_Mutation p.R179H 0.45 tolerated(0.57) benign(0.059) TCGA-DU-A5TS-01 X 76938084 76938085 - A ATRX Frame_Shift_Ins p.S889Lfs*8 0.42 TCGA-DU-A5TT-01 10 5008161 5008161 G A AKR1C1 Missense_Mutation p.R47H 0.30 tolerated(0.08) benign(0.199) TCGA-DU-A5TT-01 10 50818775 50818775 C A SLC18A3 5'UTR 0.27 TCGA-DU-A5TT-01 11 100996789 100996789 C T PGR Missense_Mutation p.G580S 0.15 deleterious(0) probably_damaging(1) TCGA-DU-A5TT-01 11 17531092 17531092 C T USH1C Silent p.P608P 0.39 TCGA-DU-A5TT-01 11 406533 406533 A G SIGIRR Silent p.P295P 0.36 TCGA-DU-A5TT-01 12 10205329 10205329 C T CLEC9A Missense_Mutation p.P15S 0.18 deleterious(0.05) possibly_damaging(0.453) TCGA-DU-A5TT-01 12 41900316 41900316 A G PDZRN4 Missense_Mutation p.N301S 0.17 tolerated(0.24) possibly_damaging(0.669) TCGA-DU-A5TT-01 12 41900459 41900459 C G PDZRN4 Missense_Mutation p.L349V 0.16 tolerated(0.05) possibly_damaging(0.459) TCGA-DU-A5TT-01 12 7242002 7242002 G A C1R Missense_Mutation p.R218C 0.11 deleterious(0.01) probably_damaging(0.969) TCGA-DU-A5TT-01 12 76741233 76741233 A T BBS10 Missense_Mutation p.F178I 0.22 deleterious(0) possibly_damaging(0.765) TCGA-DU-A5TT-01 12 78444669 78444669 C T NAV3 Missense_Mutation p.A753V 0.43 deleterious(0) probably_damaging(0.999) TCGA-DU-A5TT-01 12 86374058 86374058 C T MGAT4C Missense_Mutation p.R149H 0.26 tolerated(0.56) benign(0.125) TCGA-DU-A5TT-01 14 39722040 39722040 G A MIA2 Silent p.S552S 0.21 TCGA-DU-A5TT-01 15 25213099 25213099 G A SNURF Missense_Mutation p.R44H 0.32 tolerated_low_confidence(0.25) benign(0.001) TCGA-DU-A5TT-01 15 75655059 75655059 C T MAN2C1 Missense_Mutation p.R274K 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-DU-A5TT-01 16 31391362 31391362 G A ITGAX Silent p.A1012A 0.18 TCGA-DU-A5TT-01 16 47694709 47694709 C T PHKB Silent p.H725H 0.28 TCGA-DU-A5TT-01 17 18023395 18023395 C T MYO15A Silent p.H427H 0.20 TCGA-DU-A5TT-01 17 40500443 40500443 C T STAT3 Missense_Mutation p.R31Q 0.34 deleterious(0) probably_damaging(1) TCGA-DU-A5TT-01 17 57076657 57076657 G T TRIM37 3'UTR 0.17 TCGA-DU-A5TT-01 17 7578539 7578555 TGAGGGCAGGGGAGTAC - TP53 Splice_Site p.X126_splice 0.50 TCGA-DU-A5TT-01 17 79862808 79862808 C T PCYT2 Silent p.E375E 0.14 TCGA-DU-A5TT-01 19 15586704 15586704 C T PGLYRP2 Silent p.T259T 0.20 TCGA-DU-A5TT-01 19 52034027 52034027 C T SIGLEC6 Missense_Mutation p.R205Q 0.32 tolerated(0.42) possibly_damaging(0.848) TCGA-DU-A5TT-01 19 53848775 53848775 G A ZNF845 Missense_Mutation p.R11K 0.31 tolerated(0.44) probably_damaging(0.946) TCGA-DU-A5TT-01 19 55019286 55019286 C A LAIR2 Missense_Mutation p.A84D 0.06 deleterious(0) possibly_damaging(0.795) TCGA-DU-A5TT-01 19 58601354 58601354 A G ZSCAN18 Missense_Mutation p.L150P 0.25 deleterious(0) probably_damaging(1) TCGA-DU-A5TT-01 19 6937659 6937659 G A EMR1 Silent p.T885T 0.30 TCGA-DU-A5TT-01 19 7811372 7811372 G A CD209 Missense_Mutation p.T51M 0.25 tolerated(0.26) benign(0.028) TCGA-DU-A5TT-01 19 9577542 9577542 C T ZNF560 Missense_Mutation p.R694Q 0.23 tolerated(0.43) possibly_damaging(0.602) TCGA-DU-A5TT-01 1 158449814 158449814 A G OR10R2 Silent p.V49V 0.51 TCGA-DU-A5TT-01 1 184764460 184764460 C T FAM129A Missense_Mutation p.G813E 0.18 tolerated_low_confidence(1) benign(0.003) TCGA-DU-A5TT-01 1 204946828 204946828 T A NFASC Silent p.T617T 0.38 TCGA-DU-A5TT-01 1 209952737 209952737 C T TRAF3IP3 Intron 0.48 TCGA-DU-A5TT-01 1 231374541 231374541 T C C1orf131 Intron 0.62 TCGA-DU-A5TT-01 1 24463673 24463673 C T IL22RA1 Silent p.A101A 0.33 TCGA-DU-A5TT-01 1 28477144 28477144 G A PTAFR Missense_Mutation p.T130I 0.45 tolerated(0.19) probably_damaging(0.933) TCGA-DU-A5TT-01 1 6534096 6534096 G A PLEKHG5 Missense_Mutation p.R269C 0.23 deleterious(0) possibly_damaging(0.653) TCGA-DU-A5TT-01 1 79002436 79002436 A T PTGFR 3'UTR 0.53 TCGA-DU-A5TT-01 20 54578992 54578992 G T CBLN4 Missense_Mutation p.T79N 0.23 tolerated(0.16) benign(0.042) TCGA-DU-A5TT-01 21 46000163 46000163 C G KRTAP10-5 Missense_Mutation p.C98S 0.39 tolerated(0.05) unknown(0) TCGA-DU-A5TT-01 21 46320364 46320364 C T ITGB2 Silent p.T256T 0.38 TCGA-DU-A5TT-01 2 26644262 26644262 G A DRC1 Missense_Mutation p.R117H 0.21 tolerated(0.09) benign(0.16) TCGA-DU-A5TT-01 3 155838415 155838415 G T KCNAB1 Silent p.R5R 0.29 TCGA-DU-A5TT-01 3 169487113 169487113 T C ACTRT3 Missense_Mutation p.I66V 0.39 tolerated(0.05) probably_damaging(0.956) TCGA-DU-A5TT-01 3 178916944 178916944 A G PIK3CA Missense_Mutation p.K111E 0.27 deleterious(0.03) probably_damaging(0.983) TCGA-DU-A5TT-01 3 178936094 178936094 C G PIK3CA Missense_Mutation p.Q546E 0.17 tolerated(0.13) possibly_damaging(0.705) TCGA-DU-A5TT-01 3 47891524 47891524 G C DHX30 Missense_Mutation p.E1167Q 0.44 tolerated(0.99) benign(0.001) TCGA-DU-A5TT-01 3 50327154 50327154 C T IFRD2 Missense_Mutation p.A260T 0.44 tolerated(0.65) benign(0.02) TCGA-DU-A5TT-01 4 154625007 154625007 G T TLR2 Missense_Mutation p.R316S 0.22 tolerated(0.33) benign(0.017) TCGA-DU-A5TT-01 4 41682066 41682066 A G LIMCH1 Missense_Mutation p.E804G 0.26 deleterious(0) probably_damaging(0.998) TCGA-DU-A5TT-01 4 41983717 41983717 G A DCAF4L1 5'UTR 0.47 TCGA-DU-A5TT-01 4 69688108 69688108 G T UGT2B10 Missense_Mutation p.K329N 0.22 deleterious(0) benign(0.014) TCGA-DU-A5TT-01 5 143586601 143586601 G T KCTD16 Missense_Mutation p.R108S 0.46 deleterious(0.01) possibly_damaging(0.515) TCGA-DU-A5TT-01 5 89701540 89701540 G T CETN3 Missense_Mutation p.A77D 0.28 tolerated(0.08) benign(0.002) TCGA-DU-A5TT-01 6 100390944 100390944 G A MCHR2 Silent p.G156G 0.33 TCGA-DU-A5TT-01 6 131188677 131188677 T C EPB41L2 Silent p.S884S 0.07 TCGA-DU-A5TT-01 6 43403588 43403588 C T ABCC10 Missense_Mutation p.R570W 0.29 deleterious(0) probably_damaging(0.991) TCGA-DU-A5TT-01 6 56918473 56918473 T C KIAA1586 Silent p.A392A 0.06 TCGA-DU-A5TT-01 7 126698170 126698170 G A GRM8 Intron 0.35 TCGA-DU-A5TT-01 7 135047488 135047488 T C CNOT4 3'UTR 0.13 TCGA-DU-A5TT-01 7 150069850 150069850 G T REPIN1 Missense_Mutation p.R564L 0.19 deleterious(0) probably_damaging(0.975) TCGA-DU-A5TT-01 7 4188979 4188979 C A SDK1 Missense_Mutation p.S1503R 0.07 tolerated(0.36) benign(0.153) TCGA-DU-A5TT-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.45 deleterious(0.02) probably_damaging(0.974) TCGA-DU-A5TT-01 8 25253106 25253108 CAA - DOCK5 In_Frame_Del p.N1526del 0.08 TCGA-DU-A5TT-01 9 107331778 107331778 G A OR13C8 Silent p.T110T 0.32 TCGA-DU-A5TT-01 9 35733420 35733422 GAG - CREB3 In_Frame_Del p.E126del 0.39 TCGA-DU-A5TT-01 X 142717376 142717376 G T SLITRK4 Missense_Mutation p.L517I 0.47 deleterious(0) probably_damaging(0.978) TCGA-DU-A5TT-01 X 35820627 35820627 C T MAGEB16 Missense_Mutation p.P105L 0.42 tolerated(0.12) benign(0.423) TCGA-DU-A5TT-01 X 83319382 83319382 A G RPS6KA6 Missense_Mutation p.L714P 0.38 deleterious(0.01) possibly_damaging(0.58) TCGA-DU-A5TU-01 10 101464242 101464242 T C ENTPD7 Silent p.H539H 0.34 TCGA-DU-A5TU-01 10 96005955 96005955 G T PLCE1 Missense_Mutation p.L891F 0.47 tolerated(0.09) probably_damaging(0.982) TCGA-DU-A5TU-01 11 128360469 128360469 T C ETS1 Missense_Mutation p.M73V 0.06 tolerated(0.66) benign(0.001) TCGA-DU-A5TU-01 11 66330634 66330634 C T CTSF 3'Flank 0.48 TCGA-DU-A5TU-01 13 25743874 25743874 T C AMER2 Silent p.Q628Q 0.38 TCGA-DU-A5TU-01 14 23282566 23282566 C T SLC7A7 Silent p.E14E 0.33 TCGA-DU-A5TU-01 14 72976874 72976874 C T RGS6 Silent p.S326S 0.05 TCGA-DU-A5TU-01 15 48764791 48764791 G A FBN1 Silent p.C1431C 0.39 TCGA-DU-A5TU-01 15 84373247 84373247 G T ADAMTSL3 Missense_Mutation p.R59L 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-DU-A5TU-01 15 89386881 89386881 T C ACAN Splice_Site p.X351_splice 0.10 TCGA-DU-A5TU-01 16 20975482 20975482 T C DNAH3 Missense_Mutation p.I3242V 0.06 deleterious(0) probably_damaging(1) TCGA-DU-A5TU-01 17 1636086 1636086 A G WDR81 Missense_Mutation p.M1484V 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-DU-A5TU-01 17 39552727 39552727 G A KRT31 Missense_Mutation p.A178V 0.30 deleterious(0.04) benign(0.098) TCGA-DU-A5TU-01 17 7578524 7578524 G C TP53 Missense_Mutation p.Q136E 0.78 deleterious(0) probably_damaging(0.997) TCGA-DU-A5TU-01 18 9886961 9886961 G A TXNDC2 Missense_Mutation p.G162D 0.37 tolerated(0.27) benign(0.102) TCGA-DU-A5TU-01 19 35793494 35793494 G A MAG Missense_Mutation p.E372K 0.08 tolerated(0.11) benign(0.225) TCGA-DU-A5TU-01 19 43922452 43922452 G A TEX101 Missense_Mutation p.R236Q 0.40 tolerated(0.06) possibly_damaging(0.596) TCGA-DU-A5TU-01 1 119576827 119576827 G A WARS2 Silent p.H175H 0.35 TCGA-DU-A5TU-01 1 120057162 120057162 C T HSD3B1 Missense_Mutation p.A339V 0.06 deleterious(0.01) benign(0.012) TCGA-DU-A5TU-01 1 158298792 158298792 G A CD1B Missense_Mutation p.S300F 0.31 deleterious(0.04) possibly_damaging(0.903) TCGA-DU-A5TU-01 1 161019353 161019353 G A ARHGAP30 Missense_Mutation p.S516L 0.37 tolerated(0.24) benign(0.037) TCGA-DU-A5TU-01 1 244581040 244581040 T C ADSS Silent p.L320L 0.45 TCGA-DU-A5TU-01 1 247712382 247712382 C T GCSAML 5'Flank 0.33 TCGA-DU-A5TU-01 20 2844632 2844632 G A VPS16 Missense_Mutation p.R505Q 0.31 tolerated(0.54) benign(0.007) TCGA-DU-A5TU-01 20 50091994 50091994 C T NFATC2 Splice_Site p.X512_splice 0.20 TCGA-DU-A5TU-01 22 19868237 19868237 G A TXNRD2 Missense_Mutation p.R364W 0.09 deleterious(0) probably_damaging(1) TCGA-DU-A5TU-01 22 25623853 25623853 C T CRYBB2 Silent p.G69G 0.36 TCGA-DU-A5TU-01 22 29704343 29704343 G A GAS2L1 Missense_Mutation p.R83Q 0.23 tolerated(0.21) possibly_damaging(0.502) TCGA-DU-A5TU-01 2 179591837 179591837 C A TTN Missense_Mutation p.S6752I 0.05 TCGA-DU-A5TU-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A5TU-01 2 219920497 219920497 A G IHH Missense_Mutation p.V223A 0.04 deleterious(0) benign(0.014) TCGA-DU-A5TU-01 2 7027291 7027291 G A RSAD2 Nonsense_Mutation p.W245* 0.28 TCGA-DU-A5TU-01 3 108788570 108788570 A C MORC1 Missense_Mutation p.S242A 0.38 tolerated(0.9) benign(0.038) TCGA-DU-A5TU-01 3 133670173 133670173 A G SLCO2A1 Missense_Mutation p.V247A 0.21 deleterious(0.04) benign(0.016) TCGA-DU-A5TU-01 3 196533532 196533532 C T PAK2 Missense_Mutation p.A184V 0.06 deleterious(0.03) benign(0.391) TCGA-DU-A5TU-01 4 111397844 111397844 C T ENPEP Nonsense_Mutation p.R92* 0.12 TCGA-DU-A5TU-01 4 123140536 123140536 A G KIAA1109 Silent p.E763E 0.37 TCGA-DU-A5TU-01 4 129782915 129782915 C T JADE1 Silent p.G346G 0.34 TCGA-DU-A5TU-01 4 25005398 25005398 C A LGI2 Missense_Mutation p.R438L 0.04 deleterious(0) possibly_damaging(0.843) TCGA-DU-A5TU-01 4 39306546 39306546 C T RFC1 Silent p.E667E 0.07 TCGA-DU-A5TU-01 5 41203312 41203312 C G C6 Missense_Mutation p.L7F 0.04 deleterious(0.04) benign(0.041) TCGA-DU-A5TU-01 5 56178277 56178277 G A MAP3K1 Missense_Mutation p.D1084N 0.07 deleterious_low_confidence(0.03) benign(0.008) TCGA-DU-A5TU-01 6 46659874 46659874 A G TDRD6 Missense_Mutation p.R1337G 0.06 tolerated(0.13) benign(0.049) TCGA-DU-A5TU-01 7 2954958 2954958 G A CARD11 Missense_Mutation p.R918W 0.29 deleterious(0) probably_damaging(0.993) TCGA-DU-A5TU-01 7 72755293 72755293 T C FKBP6 Missense_Mutation p.Y269H 0.07 deleterious(0) probably_damaging(0.996) TCGA-DU-A5TU-01 7 91631134 91631134 G T AKAP9 Nonsense_Mutation p.E635* 0.43 TCGA-DU-A5TU-01 7 99526519 99526519 T G GJC3 Missense_Mutation p.K242T 0.21 tolerated(0.08) possibly_damaging(0.896) TCGA-DU-A5TU-01 8 145639357 145639357 C G SLC39A4 Silent p.L424L 0.62 TCGA-DU-A5TU-01 9 130374659 130374659 G C STXBP1 5'UTR 0.30 TCGA-DU-A5TU-01 X 125298904 125298904 C G DCAF12L2 Missense_Mutation p.R335P 0.06 deleterious(0) probably_damaging(1) TCGA-DU-A5TU-01 X 145078727 145078727 C A MIR892B RNA 0.33 TCGA-DU-A5TU-01 X 149013642 149013642 C A MAGEA8 Missense_Mutation p.T199K 0.37 deleterious(0.02) possibly_damaging(0.499) TCGA-DU-A5TU-01 X 153225450 153225450 G C HCFC1 Missense_Mutation p.P416R 0.23 tolerated(0.05) probably_damaging(0.998) TCGA-DU-A5TU-01 X 65238753 65238753 T G VSIG4 3'Flank 0.53 TCGA-DU-A5TU-01 X 65238776 65238776 G C VSIG4 3'Flank 0.53 TCGA-DU-A5TU-01 X 65238789 65238789 T C VSIG4 3'Flank 0.53 TCGA-DU-A5TU-01 X 76778782 76778782 A - ATRX Frame_Shift_Del p.L2266* 0.21 TCGA-DU-A5TU-01 X 84525047 84525047 A G ZNF711 Missense_Mutation p.T335A 0.26 tolerated(0.58) benign(0.01) TCGA-DU-A5TW-01 10 116710901 116710901 G T TRUB1 Missense_Mutation p.G145V 0.17 deleterious(0.02) possibly_damaging(0.906) TCGA-DU-A5TW-01 10 6061422 6061422 C T IL2RA Silent p.T232T 0.28 TCGA-DU-A5TW-01 10 70940084 70940084 C T SUPV3L1 Missense_Mutation p.P13S 0.15 tolerated_low_confidence(0.22) benign(0.002) TCGA-DU-A5TW-01 10 76735329 76735329 A G KAT6B Missense_Mutation p.K412E 0.04 benign(0.258) TCGA-DU-A5TW-01 11 12886385 12886385 G A TEAD1 Missense_Mutation p.V90M 0.08 deleterious(0) probably_damaging(0.995) TCGA-DU-A5TW-01 11 15222447 15222447 G A INSC Silent p.T304T 0.09 TCGA-DU-A5TW-01 11 44089249 44089249 G T ACCS Silent p.L24L 0.21 TCGA-DU-A5TW-01 11 45672219 45672219 G A CHST1 Silent p.D85D 0.17 TCGA-DU-A5TW-01 11 64684532 64684532 C T ATG2A Missense_Mutation p.G26S 0.11 deleterious(0) probably_damaging(1) TCGA-DU-A5TW-01 12 104517157 104517157 C T NFYB Silent p.E92E 0.46 TCGA-DU-A5TW-01 12 21030809 21030809 C T SLCO1B3 Silent p.Y358Y 0.20 TCGA-DU-A5TW-01 14 106805382 106805382 G T IGHV4-31 Missense_Mutation p.H61N 0.29 deleterious_low_confidence(0.01) benign(0.003) TCGA-DU-A5TW-01 15 20636396 20636396 C G HERC2P3 RNA 0.39 TCGA-DU-A5TW-01 17 10304026 10304026 C T MYH8 Missense_Mutation p.R1139H 0.16 deleterious(0) benign(0.262) TCGA-DU-A5TW-01 17 29632058 29632058 A C EVI2B Missense_Mutation p.S190R 0.07 tolerated(0.2) benign(0.034) TCGA-DU-A5TW-01 17 37006527 37006527 C T RPL23 Intron 0.09 TCGA-DU-A5TW-01 17 7574034 7574034 C G TP53 Splice_Site p.X332_splice 0.78 TCGA-DU-A5TW-01 18 22056982 22056982 G A HRH4 Missense_Mutation p.C210Y 0.04 tolerated(1) benign(0.296) TCGA-DU-A5TW-01 18 44595881 44595882 TG - KATNAL2 Frame_Shift_Del p.V235Gfs*3 0.15 TCGA-DU-A5TW-01 19 42814703 42814703 G A PRR19 Silent p.T294T 0.06 TCGA-DU-A5TW-01 19 46094975 46094975 G A GPR4 Silent p.N50N 0.12 TCGA-DU-A5TW-01 19 46915402 46915402 G A CCDC8 Silent p.G222G 0.20 TCGA-DU-A5TW-01 19 50203968 50203968 G A CPT1C Silent p.G103G 0.09 TCGA-DU-A5TW-01 19 55501464 55501464 C T NLRP2 Missense_Mutation p.T814M 0.47 tolerated(0.17) benign(0.118) TCGA-DU-A5TW-01 19 8201077 8201077 C T FBN3 Missense_Mutation p.V488M 0.10 tolerated(0.06) benign(0.394) TCGA-DU-A5TW-01 19 9046871 9046871 G A MUC16 Missense_Mutation p.T11587M 0.20 benign(0.066) TCGA-DU-A5TW-01 1 154918277 154918277 G A PBXIP1 Missense_Mutation p.R625W 0.09 deleterious(0) probably_damaging(0.949) TCGA-DU-A5TW-01 1 206711607 206711607 C T RASSF5 Silent p.T188T 0.40 TCGA-DU-A5TW-01 1 883983 883983 T C NOC2L Missense_Mutation p.M482V 0.42 tolerated(1) benign(0) TCGA-DU-A5TW-01 20 42204987 42204987 C G SGK2 Missense_Mutation p.Q333E 0.06 tolerated(0.1) benign(0.158) TCGA-DU-A5TW-01 20 44168015 44168015 A G WFDC6 Missense_Mutation p.V11A 0.04 tolerated(0.05) possibly_damaging(0.866) TCGA-DU-A5TW-01 20 47835985 47835985 C G DDX27 Missense_Mutation p.N31K 0.43 tolerated_low_confidence(0.53) benign(0) TCGA-DU-A5TW-01 21 40250530 40250530 C T AF064858.6 RNA 0.44 TCGA-DU-A5TW-01 22 39884655 39884655 G A MGAT3 Missense_Mutation p.A435T 0.36 deleterious(0) benign(0.15) TCGA-DU-A5TW-01 2 113513832 113513832 T G CKAP2L Silent p.S372S 0.04 TCGA-DU-A5TW-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A5TW-01 2 242755717 242755717 C T NEU4 Silent p.L25L 0.17 TCGA-DU-A5TW-01 2 97217809 97217809 C T ARID5A Missense_Mutation p.P515L 0.41 tolerated(0.41) benign(0.002) TCGA-DU-A5TW-01 3 128712157 128712157 C A KIAA1257 5'UTR 0.38 TCGA-DU-A5TW-01 3 132051153 132051153 A G ACPP Missense_Mutation p.I141V 0.42 tolerated(0.07) benign(0.362) TCGA-DU-A5TW-01 3 136646967 136646967 C T NCK1 Nonsense_Mutation p.R42* 0.13 TCGA-DU-A5TW-01 4 100260764 100260766 TCA - ADH1C In_Frame_Del p.N357_E358delinsK 0.17 TCGA-DU-A5TW-01 4 129792755 129792755 G A JADE1 Missense_Mutation p.G623R 0.16 deleterious(0.04) benign(0.209) TCGA-DU-A5TW-01 4 183651451 183651451 C T TENM3 Missense_Mutation p.T895I 0.31 deleterious(0) possibly_damaging(0.86) TCGA-DU-A5TW-01 4 6107435 6107435 G A JAKMIP1 Missense_Mutation p.T130M 0.11 deleterious(0.01) possibly_damaging(0.685) TCGA-DU-A5TW-01 4 71347104 71347104 C T MUC7 Missense_Mutation p.P215S 0.58 tolerated(0.09) unknown(0) TCGA-DU-A5TW-01 4 74021734 74021734 A G ANKRD17 Splice_Site p.X284_splice 0.33 TCGA-DU-A5TW-01 5 137906680 137906680 G A HSPA9 Nonsense_Mutation p.R127* 0.10 TCGA-DU-A5TW-01 5 13867993 13867993 C T DNAH5 Missense_Mutation p.E1315K 0.20 benign(0.305) TCGA-DU-A5TW-01 5 65118664 65118664 T C NLN Missense_Mutation p.M679T 0.53 tolerated(0.6) benign(0.042) TCGA-DU-A5TW-01 6 37339288 37339288 G T RNF8 Missense_Mutation p.G326C 0.10 deleterious(0) probably_damaging(0.982) TCGA-DU-A5TW-01 7 100676715 100676715 C T MUC17 Missense_Mutation p.A673V 0.08 probably_damaging(0.995) TCGA-DU-A5TW-01 7 102137329 102137329 G A RASA4B Missense_Mutation p.H274Y 0.21 deleterious(0) benign(0.15) TCGA-DU-A5TW-01 7 123302314 123302314 C A LMOD2 Missense_Mutation p.T225K 0.10 deleterious(0.01) possibly_damaging(0.735) TCGA-DU-A5TW-01 7 74203029 74203029 G A NCF1 Silent p.Q344Q 0.21 TCGA-DU-A5TW-01 8 144940844 144940844 G A EPPK1 Missense_Mutation p.T2193M 0.23 possibly_damaging(0.732) TCGA-DU-A5TW-01 9 113170752 113170752 A G SVEP1 Silent p.C2376C 0.11 TCGA-DU-A5TW-01 9 116155881 116155881 C T ALAD 5'UTR 0.46 TCGA-DU-A5TW-01 9 135535105 135535105 G A DDX31 Missense_Mutation p.T277M 0.21 deleterious(0) probably_damaging(0.999) TCGA-DU-A5TW-01 X 104984622 104984622 A G IL1RAPL2 Missense_Mutation p.Y329C 0.45 deleterious(0) probably_damaging(1) TCGA-DU-A5TW-01 X 135572458 135572458 G T BRS3 Nonsense_Mutation p.E201* 0.09 TCGA-DU-A5TW-01 X 153208402 153208402 G T RENBP Missense_Mutation p.L198M 0.07 deleterious(0.03) possibly_damaging(0.811) TCGA-DU-A5TW-01 X 32867885 32867885 C T DMD Missense_Mutation p.R49H 0.11 probably_damaging(0.983) TCGA-DU-A5TW-01 X 76937833 76937836 TCTT - ATRX Frame_Shift_Del p.K971Tfs*31 0.46 TCGA-DU-A5TW-01 X 99956505 99956505 C T SYTL4 Missense_Mutation p.R92H 0.39 deleterious(0.03) possibly_damaging(0.79) TCGA-DU-A5TY-01 11 6815878 6815878 C T OR6A2 3'UTR 0.36 TCGA-DU-A5TY-01 11 88780946 88780946 G A GRM5 Missense_Mutation p.P32L 0.28 deleterious(0.04) possibly_damaging(0.564) TCGA-DU-A5TY-01 12 117962802 117962802 G A KSR2 Missense_Mutation p.R692W 0.29 deleterious(0) probably_damaging(1) TCGA-DU-A5TY-01 12 46231286 46231286 G A ARID2 Missense_Mutation p.E376K 0.05 deleterious(0) probably_damaging(0.993) TCGA-DU-A5TY-01 12 46231295 46231295 G C ARID2 Missense_Mutation p.G379R 0.05 deleterious(0.01) possibly_damaging(0.826) TCGA-DU-A5TY-01 12 58191621 58191621 C T AVIL 3'Flank 0.88 TCGA-DU-A5TY-01 12 58200000 58200000 C G AVIL Intron 0.22 TCGA-DU-A5TY-01 12 64746733 64746733 G C C12orf56 Nonsense_Mutation p.S119* 0.03 TCGA-DU-A5TY-01 12 71094989 71094989 G A PTPRR Silent p.A374A 0.48 TCGA-DU-A5TY-01 12 71095000 71095000 G A PTPRR Silent p.L371L 0.47 TCGA-DU-A5TY-01 15 74426192 74426192 C T ISLR2 Missense_Mutation p.T366M 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-DU-A5TY-01 16 56377821 56377821 G A GNAO1 Missense_Mutation p.V342I 0.26 tolerated(1) benign(0.007) TCGA-DU-A5TY-01 16 68014019 68014019 G A DPEP3 Missense_Mutation p.R114W 0.07 deleterious(0) possibly_damaging(0.828) TCGA-DU-A5TY-01 17 38857428 38857428 G A KRT24 Silent p.T273T 0.35 TCGA-DU-A5TY-01 17 39183089 39183089 C T KRTAP1-5 Missense_Mutation p.G107S 0.26 tolerated(0.42) unknown(0) TCGA-DU-A5TY-01 18 14850277 14850277 C A ANKRD30B Missense_Mutation p.P1035T 0.21 tolerated(0.26) benign(0.073) TCGA-DU-A5TY-01 18 28923927 28923927 C T DSG1 Silent p.N620N 0.14 TCGA-DU-A5TY-01 18 57136832 57136832 G A CCBE1 Silent p.D91D 0.23 TCGA-DU-A5TY-01 19 18001745 18001745 G A SLC5A5 Missense_Mutation p.A568T 0.17 tolerated(0.75) benign(0.001) TCGA-DU-A5TY-01 19 1987539 1987539 C T BTBD2 Missense_Mutation p.E381K 0.22 tolerated(0.1) possibly_damaging(0.549) TCGA-DU-A5TY-01 19 50864253 50864253 C T NAPSA Missense_Mutation p.V205I 0.28 tolerated(0.09) benign(0.015) TCGA-DU-A5TY-01 19 54544171 54544171 C T VSTM1 3'UTR 0.08 TCGA-DU-A5TY-01 1 110050353 110050353 G A AMIGO1 Silent p.T394T 0.28 TCGA-DU-A5TY-01 1 150957082 150957082 C T ANXA9 Silent p.D134D 0.23 TCGA-DU-A5TY-01 1 181745306 181745306 G A CACNA1E Missense_Mutation p.G1737R 0.39 deleterious(0) probably_damaging(0.953) TCGA-DU-A5TY-01 1 29189572 29189572 C T OPRD1 Missense_Mutation p.A299V 0.33 tolerated(0.29) benign(0.036) TCGA-DU-A5TY-01 1 33585652 33585652 C T ADC Silent p.L418L 0.34 TCGA-DU-A5TY-01 1 39876700 39876700 T C KIAA0754 Missense_Mutation p.S119P 0.38 possibly_damaging(0.504) TCGA-DU-A5TY-01 1 76397738 76397738 C T ASB17 Missense_Mutation p.R80H 0.31 tolerated_low_confidence(0.1) possibly_damaging(0.84) TCGA-DU-A5TY-01 20 23016235 23016235 C T SSTR4 Missense_Mutation p.P39S 0.31 tolerated(0.75) benign(0) TCGA-DU-A5TY-01 21 30338725 30338725 C T LTN1 Missense_Mutation p.M742I 0.05 tolerated(0.2) benign(0.001) TCGA-DU-A5TY-01 21 43539224 43539224 C T UMODL1 Missense_Mutation p.R955W 0.20 deleterious(0.04) possibly_damaging(0.835) TCGA-DU-A5TY-01 2 148657327 148657327 G A ACVR2A Missense_Mutation p.V130I 0.35 tolerated(0.5) benign(0.033) TCGA-DU-A5TY-01 2 17884529 17884529 C T SMC6 Silent p.T679T 0.21 TCGA-DU-A5TY-01 2 180634461 180634461 G A ZNF385B Missense_Mutation p.R8W 0.28 tolerated_low_confidence(0.06) benign(0.001) TCGA-DU-A5TY-01 2 237272426 237272426 G A IQCA1 Silent p.F622F 0.13 TCGA-DU-A5TY-01 3 129023473 129023473 G T HMCES Missense_Mutation p.W290C 0.35 deleterious(0) probably_damaging(0.997) TCGA-DU-A5TY-01 3 152880516 152880516 G A RAP2B Missense_Mutation p.G12S 0.47 deleterious(0) probably_damaging(1) TCGA-DU-A5TY-01 3 8661621 8661621 C T SSUH2 Missense_Mutation p.G354D 0.30 deleterious(0) probably_damaging(0.999) TCGA-DU-A5TY-01 4 142154882 142154883 AT - ZNF330 Frame_Shift_Del p.K234Nfs*8 0.28 TCGA-DU-A5TY-01 4 187118127 187118127 G T CYP4V2 Missense_Mutation p.M149I 0.10 tolerated(0.18) benign(0.219) TCGA-DU-A5TY-01 5 161988 161988 G A PLEKHG4B Missense_Mutation p.V504M 0.34 tolerated(0.34) benign(0.006) TCGA-DU-A5TY-01 5 19838956 19838956 A G CDH18 Missense_Mutation p.V47A 0.30 tolerated(0.26) benign(0.066) TCGA-DU-A5TY-01 5 43613179 43613179 A G NNT Silent p.R107R 0.43 TCGA-DU-A5TY-01 5 76129250 76129250 C T F2RL1 Missense_Mutation p.A273V 0.05 tolerated(0.42) benign(0.022) TCGA-DU-A5TY-01 6 116277768 116277768 T C FRK Missense_Mutation p.M269V 0.45 deleterious(0.02) possibly_damaging(0.835) TCGA-DU-A5TY-01 6 30309546 30309546 G A TRIM39 Missense_Mutation p.R356H 0.42 deleterious(0.02) probably_damaging(0.975) TCGA-DU-A5TY-01 6 43171720 43171720 C G CUL9 Missense_Mutation p.S1385C 0.35 tolerated(0.1) benign(0.021) TCGA-DU-A5TY-01 6 72011297 72011297 C T OGFRL1 Nonsense_Mutation p.Q301* 0.31 TCGA-DU-A5TY-01 7 136938315 136938315 C T PTN Missense_Mutation p.C62Y 0.32 deleterious(0.01) probably_damaging(0.958) TCGA-DU-A5TY-01 7 150749681 150749681 C T ASIC3 Missense_Mutation p.P520S 0.21 tolerated_low_confidence(0.51) benign(0.032) TCGA-DU-A5TY-01 7 24329163 24329163 G A NPY Silent p.L78L 0.46 TCGA-DU-A5TY-01 7 24329168 24329168 G A NPY Missense_Mutation p.R80K 0.46 tolerated(0.85) benign(0.014) TCGA-DU-A5TY-01 7 27181573 27181573 G C HOXA5 Missense_Mutation p.L232V 0.05 deleterious(0) probably_damaging(1) TCGA-DU-A5TY-01 7 27880439 27880439 C T JAZF1 Missense_Mutation p.D145N 0.03 tolerated(0.62) possibly_damaging(0.845) TCGA-DU-A5TY-01 7 27880445 27880445 C T JAZF1 Missense_Mutation p.D143N 0.03 deleterious(0.04) possibly_damaging(0.71) TCGA-DU-A5TY-01 7 29126137 29126137 G A CPVL Missense_Mutation p.P191L 0.02 deleterious(0.01) probably_damaging(0.961) TCGA-DU-A5TY-01 7 55223582 55223582 G A EGFR Missense_Mutation p.E317K 0.06 deleterious(0) probably_damaging(0.998) TCGA-DU-A5TY-01 7 55223594 55223594 G T EGFR Missense_Mutation p.D321Y 0.07 deleterious(0) probably_damaging(0.975) TCGA-DU-A5TY-01 7 72849818 72849818 G A FZD9 Missense_Mutation p.R494Q 0.12 tolerated(0.4) possibly_damaging(0.553) TCGA-DU-A5TY-01 7 99580896 99580896 A T AZGP1P1 RNA 0.39 TCGA-DU-A5TY-01 9 138669222 138669222 C T KCNT1 Silent p.Y796Y 0.16 TCGA-DU-A5TY-01 X 105937389 105937389 G A RNF128 Missense_Mutation p.V26I 0.09 tolerated(0.11) benign(0.01) TCGA-DU-A5TY-01 X 107316040 107316040 C T VSIG1 Silent p.I218I 0.33 TCGA-DU-A5TY-01 X 109698484 109698484 G T RGAG1 Nonsense_Mutation p.E1368* 0.11 TCGA-DU-A5TY-01 X 123480556 123480556 G T SH2D1A Missense_Mutation p.A22S 0.30 tolerated(0.49) benign(0.037) TCGA-DU-A5TY-01 X 133674628 133674628 C A MIR450A2 RNA 0.22 TCGA-DU-A5TY-01 X 48559033 48559033 G C SUV39H1 Missense_Mutation p.K239N 0.40 tolerated(0.13) benign(0.003) TCGA-DU-A5TY-01 X 50378311 50378311 C A SHROOM4 Missense_Mutation p.M254I 0.30 tolerated(0.5) benign(0.001) TCGA-DU-A5TY-01 X 65414952 65414952 G - HEPH Frame_Shift_Del p.A516Lfs*54 0.27 TCGA-DU-A6S2-01 10 88439245 88439245 C T LDB3 Missense_Mutation p.A72V 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-DU-A6S2-01 12 133324458 133324458 C T ANKLE2 Missense_Mutation p.R397H 0.29 tolerated(0.29) benign(0.003) TCGA-DU-A6S2-01 12 56554168 56554168 T C MYL6 Intron 0.53 TCGA-DU-A6S2-01 14 91338462 91338462 T C RPS6KA5 Missense_Mutation p.N789D 0.21 tolerated_low_confidence(0.35) benign(0.015) TCGA-DU-A6S2-01 17 67023790 67023790 C T ABCA9 Silent p.V594V 0.30 TCGA-DU-A6S2-01 17 7258606 7258606 C T TMEM95 Missense_Mutation p.S28L 0.32 tolerated(0.16) possibly_damaging(0.504) TCGA-DU-A6S2-01 18 47018109 47018109 C G RPL17 5'UTR 0.31 TCGA-DU-A6S2-01 19 375793 375793 G A THEG Missense_Mutation p.P60S 0.34 tolerated(0.24) benign(0.083) TCGA-DU-A6S2-01 19 42791721 42791721 C T CIC Missense_Mutation p.P203S 0.49 probably_damaging(1) TCGA-DU-A6S2-01 19 59028510 59028510 C T ZBTB45 Silent p.A177A 0.47 TCGA-DU-A6S2-01 1 78430388 78430389 - AG FUBP1 Frame_Shift_Ins p.R262Sfs*12 0.24 TCGA-DU-A6S2-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A6S2-01 4 152682113 152682113 A T PET112 Missense_Mutation p.W8R 0.33 tolerated_low_confidence(0.31) benign(0) TCGA-DU-A6S2-01 4 41687760 41687760 C T LIMCH1 Missense_Mutation p.T950M 0.28 tolerated(0.38) benign(0.004) TCGA-DU-A6S2-01 4 88731862 88731862 C T IBSP Silent p.D117D 0.23 TCGA-DU-A6S2-01 6 7584612 7584612 G A DSP Missense_Mutation p.A2373T 0.08 probably_damaging(0.999) TCGA-DU-A6S2-01 7 121671570 121671570 T C PTPRZ1 Missense_Mutation p.V1708A 0.26 deleterious(0) possibly_damaging(0.813) TCGA-DU-A6S2-01 7 143771878 143771878 C T OR2A25 Missense_Mutation p.A189V 0.25 tolerated(0.07) benign(0.034) TCGA-DU-A6S2-01 9 126777629 126777629 C T LHX2 Silent p.A184A 0.36 TCGA-DU-A6S2-01 X 23411556 23411556 G A PTCHD1 Missense_Mutation p.D641N 0.26 tolerated(0.32) possibly_damaging(0.667) TCGA-DU-A6S3-01 10 30739244 30739244 G A MAP3K8 Missense_Mutation p.E188K 0.24 tolerated(0.26) possibly_damaging(0.687) TCGA-DU-A6S3-01 10 44871373 44871373 G A CXCL12 3'Flank 0.35 TCGA-DU-A6S3-01 11 67287397 67287397 C T CABP2 Silent p.G168G 0.44 TCGA-DU-A6S3-01 11 85375242 85375244 CTT - CREBZF In_Frame_Del p.K226del 0.25 TCGA-DU-A6S3-01 12 49935464 49935464 G A KCNH3 Missense_Mutation p.G121E 0.32 deleterious(0) probably_damaging(0.996) TCGA-DU-A6S3-01 12 57110851 57110853 GAA - NACA Intron 0.30 TCGA-DU-A6S3-01 12 6970648 6970650 GAG - USP5 In_Frame_Del p.E515del 0.41 TCGA-DU-A6S3-01 12 9083061 9083061 G A PHC1 Missense_Mutation p.A215T 0.22 tolerated(1) benign(0.243) TCGA-DU-A6S3-01 13 103518463 103518463 T C ERCC5 Intron 0.18 TCGA-DU-A6S3-01 13 46721233 46721235 CTT - LCP1 In_Frame_Del p.K328del 0.42 TCGA-DU-A6S3-01 14 96707058 96707058 C T BDKRB2 Silent p.R131R 0.37 TCGA-DU-A6S3-01 15 44150878 44150878 T G WDR76 Missense_Mutation p.H473Q 0.12 tolerated(0.47) benign(0.017) TCGA-DU-A6S3-01 15 48063212 48063212 C T SEMA6D Missense_Mutation p.P818S 0.25 deleterious(0.04) benign(0.005) TCGA-DU-A6S3-01 16 15839063 15839063 C T MYH11 Missense_Mutation p.A822T 0.07 probably_damaging(0.998) TCGA-DU-A6S3-01 16 61851533 61851533 G A CDH8 Missense_Mutation p.A376V 0.27 tolerated(0.08) probably_damaging(0.943) TCGA-DU-A6S3-01 16 67265220 67265222 CTT - FHOD1 In_Frame_Del p.K846del 0.42 TCGA-DU-A6S3-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.66 probably_damaging(1) TCGA-DU-A6S3-01 19 48305251 48305251 A G TPRX1 Silent p.D339D 0.73 TCGA-DU-A6S3-01 19 9523832 9523832 G A ZNF266 3'UTR 0.62 TCGA-DU-A6S3-01 1 170003625 170003625 A C KIFAP3 Missense_Mutation p.F210L 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-DU-A6S3-01 1 185987381 185987381 A G HMCN1 Silent p.K1789K 0.30 TCGA-DU-A6S3-01 1 228529181 228529181 G A OBSCN Missense_Mutation p.R6924H 0.52 probably_damaging(0.999) TCGA-DU-A6S3-01 1 78428460 78428464 TCTTT - FUBP1 Frame_Shift_Del p.E445Dfs*44 0.61 TCGA-DU-A6S3-01 21 11049595 11049595 A G BAGE2 RNA 0.07 TCGA-DU-A6S3-01 22 22324757 22324757 C T TOP3B Missense_Mutation p.V136I 0.42 tolerated(0.4) benign(0.035) TCGA-DU-A6S3-01 2 166165901 166165901 G A SCN2A Intron 0.23 TCGA-DU-A6S3-01 2 177017736 177017736 G A HOXD3 5'UTR 0.35 TCGA-DU-A6S3-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A6S3-01 2 25655840 25655840 G A DTNB Missense_Mutation p.R458C 0.56 deleterious(0) probably_damaging(0.994) TCGA-DU-A6S3-01 2 56108807 56108807 G A EFEMP1 Missense_Mutation p.R194W 0.37 tolerated(0.15) probably_damaging(1) TCGA-DU-A6S3-01 3 178928078 178928080 AGA - PIK3CA In_Frame_Del p.E453del 0.37 TCGA-DU-A6S3-01 3 45804412 45804412 G A SLC6A20 Silent p.L486L 0.21 TCGA-DU-A6S3-01 3 66433766 66433766 C T LRIG1 Missense_Mutation p.A711T 0.38 deleterious(0.01) benign(0.069) TCGA-DU-A6S3-01 4 76809383 76809386 CTCA G PPEF2 In_Frame_Del p.E173del 0.18 TCGA-DU-A6S3-01 5 93076551 93076551 A G POU5F2 Missense_Mutation p.I240T 0.33 deleterious(0.02) possibly_damaging(0.612) TCGA-DU-A6S3-01 6 138584709 138584709 G A KIAA1244 Missense_Mutation p.D697N 0.48 tolerated(0.06) probably_damaging(0.999) TCGA-DU-A6S3-01 6 28872363 28872363 G T TRIM27 Nonsense_Mutation p.Y342* 0.42 TCGA-DU-A6S3-01 9 13216804 13216804 C - MPDZ Frame_Shift_Del p.G420Efs*10 0.26 TCGA-DU-A6S3-01 9 139413070 139413072 AGA - NOTCH1 In_Frame_Del p.F357del 0.56 TCGA-DU-A6S3-01 9 34514457 34514458 TG - DNAI1 Frame_Shift_Del p.S547Lfs*33 0.32 TCGA-DU-A6S6-01 11 66619307 66619307 C - PC Frame_Shift_Del p.A646Pfs*102 0.34 TCGA-DU-A6S6-01 11 71949150 71949150 G A INPPL1 Missense_Mutation p.R1206Q 0.27 tolerated(0.71) benign(0.001) TCGA-DU-A6S6-01 12 7867781 7867781 G A DPPA3 Missense_Mutation p.A29T 0.58 deleterious(0.01) benign(0.444) TCGA-DU-A6S6-01 13 25478133 25478133 T G CENPJ Missense_Mutation p.K919T 0.44 deleterious(0) probably_damaging(0.947) TCGA-DU-A6S6-01 18 65179104 65179104 C T DSEL Silent p.G924G 0.05 TCGA-DU-A6S6-01 19 21349135 21349135 C T ZNF431 Intron 0.31 TCGA-DU-A6S6-01 19 54314478 54314478 C T NLRP12 Silent p.A145A 0.77 TCGA-DU-A6S6-01 1 160385688 160385688 C T VANGL2 Missense_Mutation p.R21C 0.12 deleterious(0) unknown(0) TCGA-DU-A6S6-01 20 10620204 10620207 TGTT - JAG1 Frame_Shift_Del p.K1199Rfs*12 0.30 TCGA-DU-A6S6-01 2 207422173 207422173 A T ADAM23 Missense_Mutation p.H319L 0.45 tolerated(0.27) benign(0.173) TCGA-DU-A6S6-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A6S6-01 2 86348616 86348616 C G PTCD3 Missense_Mutation p.L185V 0.38 deleterious(0.05) possibly_damaging(0.78) TCGA-DU-A6S6-01 3 32932914 32932914 G A TRIM71 Missense_Mutation p.E740K 0.35 deleterious(0.01) possibly_damaging(0.701) TCGA-DU-A6S6-01 6 25771175 25771175 T A SLC17A4 Missense_Mutation p.I214N 0.49 deleterious(0.03) benign(0.038) TCGA-DU-A6S6-01 7 143096028 143096028 C T EPHA1 Silent p.S334S 0.24 TCGA-DU-A6S6-01 X 119037475 119037475 A T AKAP14 Nonsense_Mutation p.K63* 0.40 TCGA-DU-A6S6-01 X 21871590 21871590 G A MBTPS2 Silent p.S213S 0.09 TCGA-DU-A6S7-01 10 124348751 124348751 G T DMBT1 Missense_Mutation p.G692V 0.06 deleterious(0.02) unknown(0) TCGA-DU-A6S7-01 10 43623650 43623650 A G RET Missense_Mutation p.D1093G 0.05 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-DU-A6S7-01 10 90524167 90524167 G A LIPN Missense_Mutation p.G76D 0.18 tolerated(0.06) benign(0.065) TCGA-DU-A6S7-01 11 2339156 2339156 G A TSPAN32 3'UTR 0.18 TCGA-DU-A6S7-01 11 55541619 55541619 C T OR5D13 Missense_Mutation p.R236C 0.23 tolerated(0.07) benign(0.082) TCGA-DU-A6S7-01 11 9810864 9810864 G C SBF2 Missense_Mutation p.S1575C 0.10 tolerated(0.17) benign(0.149) TCGA-DU-A6S7-01 13 113536317 113536317 A G ATP11A 3'UTR 0.35 TCGA-DU-A6S7-01 13 30857773 30857773 T C KATNAL1 Missense_Mutation p.I48V 0.22 tolerated(0.51) benign(0) TCGA-DU-A6S7-01 16 29828039 29828039 G T PAGR1 Nonsense_Mutation p.E65* 0.17 TCGA-DU-A6S7-01 16 55730230 55730230 C T SLC6A2 Missense_Mutation p.A414V 0.05 deleterious(0) benign(0.105) TCGA-DU-A6S7-01 16 82033700 82033700 T C SDR42E1 Silent p.K66K 0.05 TCGA-DU-A6S7-01 17 10411951 10411951 C A MYH1 Missense_Mutation p.M542I 0.23 deleterious(0.03) possibly_damaging(0.498) TCGA-DU-A6S7-01 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.89 deleterious(0) possibly_damaging(0.9) TCGA-DU-A6S7-01 1 11181326 11181326 A G MTOR Missense_Mutation p.W2304R 0.26 deleterious(0) probably_damaging(0.998) TCGA-DU-A6S7-01 1 22222729 22222729 C T HSPG2 Missense_Mutation p.M46I 0.21 benign(0) TCGA-DU-A6S7-01 1 248309048 248309048 T C OR2M5 Missense_Mutation p.F200S 0.07 deleterious(0.02) probably_damaging(0.978) TCGA-DU-A6S7-01 20 35173452 35173452 C T MYL9 Silent p.H55H 0.06 TCGA-DU-A6S7-01 20 43804744 43804744 T C PI3 Missense_Mutation p.S108P 0.26 tolerated(0.21) benign(0.063) TCGA-DU-A6S7-01 20 62571549 62571549 C T UCKL1 Silent p.A507A 0.08 TCGA-DU-A6S7-01 22 46780468 46780468 G A CELSR1 Silent p.A2285A 0.41 TCGA-DU-A6S7-01 2 113786563 113786564 AG - IL36B Frame_Shift_Del p.C72Sfs*15 0.07 TCGA-DU-A6S7-01 2 165551407 165551408 TC - COBLL1 Frame_Shift_Del p.D870Hfs*22 0.23 TCGA-DU-A6S7-01 2 179701639 179701639 G A CCDC141 Missense_Mutation p.P1436L 0.18 deleterious(0) probably_damaging(1) TCGA-DU-A6S7-01 2 209113113 209113113 G T IDH1 Missense_Mutation p.R132S 0.45 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DU-A6S7-01 2 89049582 89049582 A C RPIA Missense_Mutation p.K308T 0.12 deleterious(0) benign(0.185) TCGA-DU-A6S7-01 3 131388554 131388554 A G CPNE4 Missense_Mutation p.S216P 0.17 deleterious(0.02) benign(0.287) TCGA-DU-A6S7-01 3 42727549 42727549 C T KLHL40 Missense_Mutation p.R147C 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-A6S7-01 4 175224899 175224899 C T CEP44 Nonsense_Mutation p.Q95* 0.39 TCGA-DU-A6S7-01 5 135692453 135692453 C T TRPC7 Missense_Mutation p.R208Q 0.28 tolerated(0.36) benign(0.028) TCGA-DU-A6S7-01 6 134312167 134312167 G C SLC2A12 3'UTR 0.45 TCGA-DU-A6S7-01 8 139890318 139890318 G A COL22A1 Silent p.H111H 0.25 TCGA-DU-A6S7-01 8 38187162 38187162 C T WHSC1L1 Missense_Mutation p.A439T 0.14 tolerated(0.65) benign(0.002) TCGA-DU-A6S7-01 9 125486748 125486748 C T OR1L4 Silent p.R160R 0.09 TCGA-DU-A6S7-01 X 101911243 101911243 A G GPRASP1 Missense_Mutation p.D801G 0.04 tolerated(0.19) benign(0.004) TCGA-DU-A6S7-01 X 107400193 107400193 G T COL4A6 3'UTR 0.06 TCGA-DU-A6S7-01 X 2825456 2825456 G A ARSD Silent p.A546A 0.44 TCGA-DU-A6S7-01 X 54321052 54321052 C A WNK3 Missense_Mutation p.V543F 0.26 deleterious(0) possibly_damaging(0.786) TCGA-DU-A6S7-01 X 70783246 70783246 C T OGT Missense_Mutation p.P778L 0.08 deleterious_low_confidence(0.04) benign(0.032) TCGA-DU-A6S7-01 X 76814303 76814306 ATAA - ATRX Frame_Shift_Del p.F2113Sfs*9 0.38 TCGA-DU-A6S8-01 10 112839099 112839099 C T ADRA2A Missense_Mutation p.R449C 0.16 deleterious(0) probably_damaging(0.988) TCGA-DU-A6S8-01 10 17362896 17362896 C T ST8SIA6 Missense_Mutation p.S393N 0.41 deleterious(0.04) benign(0.3) TCGA-DU-A6S8-01 10 52573649 52573649 A G A1CF Silent p.L439L 0.13 TCGA-DU-A6S8-01 10 91178247 91178247 A G IFIT5 Missense_Mutation p.N431D 0.22 tolerated(0.08) benign(0.006) TCGA-DU-A6S8-01 10 93590720 93590720 T C TNKS2 Missense_Mutation p.I382T 0.12 tolerated(0.1) benign(0.174) TCGA-DU-A6S8-01 11 399104 399104 A G PKP3 Missense_Mutation p.D394G 0.14 deleterious(0.01) benign(0.213) TCGA-DU-A6S8-01 11 46782334 46782334 G A CKAP5 Missense_Mutation p.L1408F 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-DU-A6S8-01 11 66113423 66113423 C G B3GNT1 3'UTR 0.41 TCGA-DU-A6S8-01 11 70013431 70013431 G A ANO1 Missense_Mutation p.R712Q 0.21 tolerated(1) probably_damaging(0.986) TCGA-DU-A6S8-01 12 102813295 102813295 T C IGF1 Missense_Mutation p.T132A 0.41 tolerated(1) benign(0.001) TCGA-DU-A6S8-01 12 109719350 109719350 C A FOXN4 Missense_Mutation p.A386S 0.19 tolerated(0.53) benign(0.046) TCGA-DU-A6S8-01 12 20783011 20783011 T C PDE3A Silent p.S570S 0.22 TCGA-DU-A6S8-01 14 21897261 21897261 T C CHD8 Silent p.S359S 0.09 TCGA-DU-A6S8-01 15 24923301 24923301 C T NPAP1 Missense_Mutation p.P763S 0.26 tolerated(0.84) benign(0.017) TCGA-DU-A6S8-01 15 78474344 78474344 G A ACSBG1 Silent p.A346A 0.44 TCGA-DU-A6S8-01 16 27503732 27503733 AT - GTF3C1 Frame_Shift_Del p.Y1026Cfs*14 0.29 TCGA-DU-A6S8-01 16 48221160 48221160 A G ABCC11 Missense_Mutation p.I962T 0.54 deleterious(0.04) benign(0.055) TCGA-DU-A6S8-01 16 787302 787302 C T NARFL Missense_Mutation p.A64T 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-DU-A6S8-01 17 1840215 1840215 A G RTN4RL1 Missense_Mutation p.F301L 0.27 tolerated(0.89) benign(0.05) TCGA-DU-A6S8-01 17 27614074 27614074 T C NUFIP2 Missense_Mutation p.K313R 0.08 deleterious(0) probably_damaging(0.99) TCGA-DU-A6S8-01 17 80202606 80202606 A G CSNK1D 3'UTR 0.31 TCGA-DU-A6S8-01 18 14542921 14542921 G A POTEC Silent p.S75S 0.12 TCGA-DU-A6S8-01 18 28916444 28916444 A G DSG1 Missense_Mutation p.N378S 0.16 deleterious(0) probably_damaging(0.984) TCGA-DU-A6S8-01 19 10908075 10908075 G A DNM2 Missense_Mutation p.D406N 0.16 deleterious(0) probably_damaging(0.994) TCGA-DU-A6S8-01 19 18775153 18775153 C T KLHL26 Missense_Mutation p.L56F 0.45 tolerated(0.27) probably_damaging(1) TCGA-DU-A6S8-01 19 21300392 21300392 G A ZNF714 Missense_Mutation p.G308R 0.46 tolerated(0.07) possibly_damaging(0.906) TCGA-DU-A6S8-01 19 22941745 22941745 A G ZNF99 Silent p.F322F 0.41 TCGA-DU-A6S8-01 19 40225051 40225051 C A CLC Missense_Mutation p.G59C 0.15 deleterious(0) probably_damaging(0.999) TCGA-DU-A6S8-01 19 42791818 42791818 G A CIC Missense_Mutation p.G235D 0.68 probably_damaging(1) TCGA-DU-A6S8-01 19 56423307 56423307 C T NLRP13 Missense_Mutation p.A626T 0.35 tolerated(0.38) benign(0.041) TCGA-DU-A6S8-01 19 8381422 8381424 ATG - NDUFA7 In_Frame_Del p.I69del 0.43 TCGA-DU-A6S8-01 1 197070715 197070715 C T ASPM Missense_Mutation p.A2556T 0.38 deleterious(0.04) probably_damaging(1) TCGA-DU-A6S8-01 1 241731922 241731922 C T KMO Missense_Mutation p.P311L 0.48 deleterious(0) probably_damaging(1) TCGA-DU-A6S8-01 1 2938806 2938806 G A ACTRT2 Missense_Mutation p.G186S 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-DU-A6S8-01 20 43851147 43851147 C T SEMG2 Missense_Mutation p.R292C 0.38 deleterious(0.01) possibly_damaging(0.84) TCGA-DU-A6S8-01 20 44979079 44979079 C G SLC35C2 Missense_Mutation p.G351A 0.26 tolerated(0.65) benign(0.008) TCGA-DU-A6S8-01 20 61594021 61594021 C T SLC17A9 Silent p.Y181Y 0.12 TCGA-DU-A6S8-01 21 45658330 45658330 C T ICOSLG Splice_Site p.X19_splice 0.33 TCGA-DU-A6S8-01 22 46657680 46657680 C T PKDREJ Missense_Mutation p.G514R 0.08 tolerated(0.09) possibly_damaging(0.901) TCGA-DU-A6S8-01 2 110373253 110373253 C - SOWAHC Frame_Shift_Del p.L397Wfs*36 0.35 TCGA-DU-A6S8-01 2 128030454 128030454 A - ERCC3 Frame_Shift_Del p.I605Tfs*6 0.26 TCGA-DU-A6S8-01 2 162273034 162273034 C G TBR1 Missense_Mutation p.P38R 0.38 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-DU-A6S8-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A6S8-01 2 211302538 211302538 T C LANCL1 Missense_Mutation p.Y250C 0.08 deleterious(0) probably_damaging(0.965) TCGA-DU-A6S8-01 2 219557982 219557982 A G STK36 Missense_Mutation p.N688S 0.09 tolerated(0.15) benign(0.004) TCGA-DU-A6S8-01 3 171455389 171455389 G A PLD1 Missense_Mutation p.T74M 0.55 deleterious(0.02) possibly_damaging(0.534) TCGA-DU-A6S8-01 4 154216540 154216540 G A TRIM2 Missense_Mutation p.A288T 0.91 deleterious(0.05) benign(0.411) TCGA-DU-A6S8-01 4 80327935 80327935 G T GK2 Missense_Mutation p.L474I 0.05 tolerated(0.34) benign(0.065) TCGA-DU-A6S8-01 5 225531 225531 C T SDHA Intron 0.30 TCGA-DU-A6S8-01 6 118953718 118953718 T C CEP85L Missense_Mutation p.T47A 0.47 tolerated(0.81) benign(0.005) TCGA-DU-A6S8-01 6 24559320 24559320 C T KIAA0319 Silent p.V885V 0.24 TCGA-DU-A6S8-01 6 26124122 26124122 G A HIST1H2BC Missense_Mutation p.P4L 0.07 tolerated_low_confidence(0.25) unknown(0) TCGA-DU-A6S8-01 6 32943853 32943881 TTCCTACAGAAGGTTGCATCAATGCCACA CTCCT BRD2 In_Frame_Del p.F173_Q182delinsLL 0.27 TCGA-DU-A6S8-01 7 122635560 122635560 C T TAS2R16 Missense_Mutation p.M43I 0.33 tolerated(0.47) benign(0) TCGA-DU-A6S8-01 7 141629852 141629852 G A CLEC5A 3'UTR 0.13 TCGA-DU-A6S8-01 7 40535964 40535964 G C SUGCT Missense_Mutation p.K363N 0.50 deleterious(0.03) benign(0.444) TCGA-DU-A6S8-01 8 2037956 2037956 G A MYOM2 Silent p.R590R 0.07 TCGA-DU-A6S8-01 9 32633529 32633529 A - TAF1L Frame_Shift_Del p.F683Lfs*27 0.45 TCGA-DU-A6S8-01 X 108780167 108780167 C T NXT2 Missense_Mutation p.P33S 0.48 tolerated_low_confidence(0.15) benign(0.001) TCGA-DU-A6S8-01 X 127185637 127185637 C T ACTRT1 Missense_Mutation p.M183I 0.36 tolerated(0.21) benign(0.001) TCGA-DU-A6S8-01 X 139038428 139038428 T G CXorf66 Missense_Mutation p.K238T 0.45 deleterious(0) possibly_damaging(0.859) TCGA-DU-A6S8-01 X 153284093 153284093 G A IRAK1 Missense_Mutation p.A229V 0.11 deleterious(0) probably_damaging(0.997) TCGA-DU-A6S8-01 X 153418564 153418564 C T OPN1LW Silent p.P187P 0.19 TCGA-DU-A6S8-01 X 27998106 27998106 C A DCAF8L1 Missense_Mutation p.R449L 0.08 deleterious(0.02) possibly_damaging(0.629) TCGA-DU-A6S8-01 X 30327411 30327411 G A NR0B1 Missense_Mutation p.R24C 0.35 deleterious_low_confidence(0) possibly_damaging(0.545) TCGA-DU-A6S8-01 X 34149549 34149549 G A FAM47A Missense_Mutation p.R283W 0.40 tolerated(0.12) possibly_damaging(0.835) TCGA-DU-A6S8-01 X 83128413 83128413 C T CYLC1 Missense_Mutation p.P233S 0.44 tolerated(0.62) benign(0) TCGA-DU-A76K-01 10 22616921 22616925 AAGAT - BMI1 Frame_Shift_Del p.D121Efs*5 0.41 TCGA-DU-A76K-01 10 26500966 26500966 T C MYO3A 3'UTR 0.24 TCGA-DU-A76K-01 10 69882079 69882079 T C MYPN Missense_Mutation p.I295T 0.34 tolerated(0.41) probably_damaging(0.91) TCGA-DU-A76K-01 10 73563115 73563115 G A CDH23 Missense_Mutation p.V364I 0.35 tolerated(0.39) benign(0.164) TCGA-DU-A76K-01 11 130275913 130275913 G A ADAMTS8 Missense_Mutation p.T737M 0.04 tolerated(0.06) probably_damaging(0.982) TCGA-DU-A76K-01 11 59620692 59620692 G A TCN1 Silent p.G408G 0.31 TCGA-DU-A76K-01 12 113552605 113552605 C T RASAL1 Missense_Mutation p.R394Q 0.25 tolerated(0.26) possibly_damaging(0.888) TCGA-DU-A76K-01 12 121432064 121432064 C T HNF1A Missense_Mutation p.R271W 0.32 deleterious(0) probably_damaging(0.998) TCGA-DU-A76K-01 13 25171614 25171614 T C RP11-556N21.1 RNA 0.28 TCGA-DU-A76K-01 13 50204751 50204751 C T ARL11 Silent p.H56H 0.31 TCGA-DU-A76K-01 15 20657769 20657769 T A HERC2P3 RNA 0.10 TCGA-DU-A76K-01 15 48533740 48533740 C A SLC12A1 Missense_Mutation p.T415N 0.25 deleterious(0) possibly_damaging(0.632) TCGA-DU-A76K-01 16 21262201 21262201 C T ANKS4B 3'UTR 0.41 TCGA-DU-A76K-01 16 31195601 31195601 A G FUS Missense_Mutation p.Y136C 0.24 deleterious(0) unknown(0) TCGA-DU-A76K-01 16 70942293 70942293 G A HYDIN Missense_Mutation p.T2753M 0.16 probably_damaging(0.968) TCGA-DU-A76K-01 17 1371366 1371366 G A MYO1C Missense_Mutation p.R938W 0.27 deleterious(0) probably_damaging(1) TCGA-DU-A76K-01 17 18781090 18781090 G A PRPSAP2 Missense_Mutation p.V107M 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-DU-A76K-01 17 20451635 20451635 G A RP11-434D2.3 RNA 0.17 TCGA-DU-A76K-01 17 33486482 33486482 G A UNC45B Silent p.A299A 0.34 TCGA-DU-A76K-01 17 39334113 39334113 G A KRTAP4-2 Missense_Mutation p.R102C 0.32 deleterious(0.03) unknown(0) TCGA-DU-A76K-01 17 41276094 41276094 C T BRCA1 Missense_Mutation p.R7H 0.27 tolerated(0.53) benign(0.001) TCGA-DU-A76K-01 17 43313573 43313573 G A FMNL1 Missense_Mutation p.V229I 0.43 deleterious(0) unknown(0) TCGA-DU-A76K-01 17 45452306 45452306 C T EFCAB13 Missense_Mutation p.T449M 0.05 deleterious(0.04) benign(0.012) TCGA-DU-A76K-01 17 77044003 77044003 G A C1QTNF1 Missense_Mutation p.D227N 0.26 deleterious(0) probably_damaging(0.989) TCGA-DU-A76K-01 18 14179525 14179525 C T ANKRD20A5P RNA 0.29 TCGA-DU-A76K-01 18 61379901 61379901 G A SERPINB11 Missense_Mutation p.G111R 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-DU-A76K-01 18 67816254 67816254 T C RTTN Missense_Mutation p.D731G 0.31 tolerated(0.16) benign(0.034) TCGA-DU-A76K-01 18 74091249 74091249 C T ZNF516 Missense_Mutation p.A941T 0.28 tolerated(1) benign(0.001) TCGA-DU-A76K-01 19 12936718 12936718 G T RTBDN Silent p.R196R 0.05 TCGA-DU-A76K-01 19 19823828 19823828 G A ZNF14 Missense_Mutation p.P88S 0.03 tolerated(0.24) benign(0.194) TCGA-DU-A76K-01 19 35849929 35849929 G A FFAR3 Missense_Mutation p.R46H 0.12 tolerated(0.13) benign(0.013) TCGA-DU-A76K-01 19 3825253 3825253 G A ZFR2 Silent p.P396P 0.32 TCGA-DU-A76K-01 19 3913829 3913829 G A ATCAY Missense_Mutation p.V314I 0.16 tolerated(0.19) benign(0.243) TCGA-DU-A76K-01 19 39971137 39971137 C T TIMM50 5'UTR 0.20 TCGA-DU-A76K-01 19 49967201 49967201 G A ALDH16A1 Missense_Mutation p.V397M 0.19 deleterious(0.01) benign(0.389) TCGA-DU-A76K-01 19 51274418 51274418 C T GPR32 Silent p.G187G 0.26 TCGA-DU-A76K-01 19 55325146 55325146 T C KIR2DL4 Silent p.D236D 0.15 TCGA-DU-A76K-01 1 107599766 107599766 A G PRMT6 Silent p.V143V 0.31 TCGA-DU-A76K-01 1 115231293 115231293 C T AMPD1 Missense_Mutation p.R68H 0.05 tolerated(0.08) benign(0.035) TCGA-DU-A76K-01 1 152671370 152671370 G A LCE2A 5'UTR 0.34 TCGA-DU-A76K-01 1 169702103 169702103 T C SELE Missense_Mutation p.N25S 0.32 tolerated(0.19) benign(0.002) TCGA-DU-A76K-01 20 2844622 2844622 G T VPS16 Missense_Mutation p.D502Y 0.05 deleterious(0.01) benign(0.308) TCGA-DU-A76K-01 20 55206327 55206327 C G TFAP2C Missense_Mutation p.L39V 0.23 tolerated(0.25) benign(0.237) TCGA-DU-A76K-01 21 15517083 15517083 T C LIPI Missense_Mutation p.I407V 0.46 tolerated(0.06) possibly_damaging(0.539) TCGA-DU-A76K-01 21 37617841 37617841 C T DOPEY2 Missense_Mutation p.A1188V 0.23 tolerated(0.1) possibly_damaging(0.468) TCGA-DU-A76K-01 22 32293599 32293599 C - DEPDC5 Frame_Shift_Del p.S1437Afs*128 0.12 TCGA-DU-A76K-01 2 220283161 220283161 G A DES 5'UTR 0.16 TCGA-DU-A76K-01 2 86831482 86831482 C A RNF103 Missense_Mutation p.M514I 0.28 tolerated(0.34) benign(0) TCGA-DU-A76K-01 3 184008969 184008969 C T ECE2 Missense_Mutation p.T777M 0.27 deleterious(0) probably_damaging(1) TCGA-DU-A76K-01 3 186917604 186917604 C T RTP1 Missense_Mutation p.R180C 0.30 deleterious(0.03) possibly_damaging(0.832) TCGA-DU-A76K-01 3 44701529 44701530 - ATAT ZNF35 3'UTR 0.15 TCGA-DU-A76K-01 3 57528508 57528509 TA - DNAH12 Frame_Shift_Del p.I30Rfs*3 0.26 TCGA-DU-A76K-01 4 13378229 13378229 C G RAB28 Missense_Mutation p.Q171H 0.26 tolerated(0.32) benign(0.214) TCGA-DU-A76K-01 4 99399849 99399849 G C TSPAN5 Missense_Mutation p.T188S 0.30 tolerated(0.61) benign(0.158) TCGA-DU-A76K-01 5 135288604 135288604 G A LECT2 Silent p.I33I 0.08 TCGA-DU-A76K-01 5 78076097 78076097 G A ARSB 3'UTR 0.22 TCGA-DU-A76K-01 6 27222836 27222836 C T PRSS16 Missense_Mutation p.R468C 0.26 deleterious(0.01) benign(0.002) TCGA-DU-A76K-01 6 31545432 31545432 G A TNF 3'UTR 0.17 TCGA-DU-A76K-01 6 32908535 32908535 C A HLA-DMB Missense_Mutation p.G17V 0.34 deleterious(0.03) benign(0.245) TCGA-DU-A76K-01 6 71571361 71571361 T A SMAP1 3'UTR 0.18 TCGA-DU-A76K-01 7 129474885 129474885 G A UBE2H Silent p.Y148Y 0.21 TCGA-DU-A76K-01 7 138589815 138589815 G A KIAA1549 Missense_Mutation p.P1158L 0.24 deleterious(0.01) possibly_damaging(0.741) TCGA-DU-A76K-01 7 142561851 142561851 G A EPHB6 Missense_Mutation p.R98H 0.22 deleterious(0.04) benign(0.023) TCGA-DU-A76K-01 7 142723328 142723328 G A OR9A2 Nonsense_Mutation p.R298* 0.23 TCGA-DU-A76K-01 8 119945527 119945527 A C TNFRSF11B Missense_Mutation p.S15A 0.29 tolerated(0.18) benign(0.111) TCGA-DU-A76K-01 8 125035786 125035786 G A FER1L6 Missense_Mutation p.A746T 0.24 tolerated(0.06) benign(0.001) TCGA-DU-A76K-01 8 53092709 53092709 A T ST18 Missense_Mutation p.L84M 0.34 tolerated(0.1) benign(0.024) TCGA-DU-A76K-01 8 89068438 89068438 C G MMP16 Missense_Mutation p.G431R 0.11 deleterious(0) probably_damaging(0.983) TCGA-DU-A76K-01 9 132642504 132642504 G T USP20 Missense_Mutation p.E899D 0.29 tolerated_low_confidence(0.85) benign(0.002) TCGA-DU-A76K-01 X 149898642 149898642 A G MTMR1 Missense_Mutation p.E198G 0.53 deleterious(0.02) benign(0.021) TCGA-DU-A76K-01 X 153069951 153069951 G A PDZD4 Silent p.V389V 0.62 TCGA-DU-A76L-01 10 102738982 102738982 T C SEMA4G Missense_Mutation p.S313P 0.06 tolerated(0.23) benign(0.003) TCGA-DU-A76L-01 10 30602641 30602641 A C MTPAP Missense_Mutation p.F549C 0.37 tolerated(0.19) benign(0) TCGA-DU-A76L-01 10 73579488 73579488 C T PSAP Missense_Mutation p.R392Q 0.41 tolerated(0.52) benign(0.02) TCGA-DU-A76L-01 11 76903158 76903158 C T MYO7A Silent p.Y1329Y 0.24 TCGA-DU-A76L-01 12 130184843 130184843 G A TMEM132D Silent p.S160S 0.37 TCGA-DU-A76L-01 12 2613704 2613704 G A CACNA1C Intron 0.28 TCGA-DU-A76L-01 14 45432836 45432836 C G FAM179B Missense_Mutation p.D404E 0.46 deleterious(0) probably_damaging(0.999) TCGA-DU-A76L-01 15 85656622 85656622 C T PDE8A Nonsense_Mutation p.R377* 0.20 TCGA-DU-A76L-01 16 20396139 20396139 C T PDILT Silent p.A79A 0.31 TCGA-DU-A76L-01 17 12920190 12920190 C T ELAC2 Missense_Mutation p.G119E 0.23 deleterious(0) probably_damaging(0.999) TCGA-DU-A76L-01 17 1576707 1576707 G A PRPF8 Missense_Mutation p.R1201C 0.22 deleterious(0) probably_damaging(0.97) TCGA-DU-A76L-01 17 16667394 16667394 G A CCDC144A Missense_Mutation p.V1335I 0.20 tolerated(0.06) benign(0.043) TCGA-DU-A76L-01 17 29550493 29550497 TTAAC - NF1 Frame_Shift_Del p.L585* 0.22 TCGA-DU-A76L-01 17 38645093 38645093 C T TNS4 Missense_Mutation p.V190I 0.31 tolerated(0.65) benign(0.001) TCGA-DU-A76L-01 17 74943988 74943988 C T MGAT5B Missense_Mutation p.A676V 0.17 tolerated(0.1) possibly_damaging(0.46) TCGA-DU-A76L-01 18 7949214 7949214 C T PTPRM Silent p.I233I 0.16 TCGA-DU-A76L-01 1 152595412 152595412 C A LCE3A Missense_Mutation p.R56S 0.26 deleterious_low_confidence(0.03) unknown(0) TCGA-DU-A76L-01 1 156876623 156876623 G A PEAR1 Missense_Mutation p.D199N 0.31 tolerated(0.37) benign(0.007) TCGA-DU-A76L-01 1 167042732 167042732 C T GPA33 Missense_Mutation p.V30I 0.30 tolerated(0.37) benign(0.016) TCGA-DU-A76L-01 1 201035428 201035428 C T CACNA1S Missense_Mutation p.V892M 0.21 deleterious(0) probably_damaging(0.957) TCGA-DU-A76L-01 1 248085070 248085070 G A OR2T8 Missense_Mutation p.G251R 0.30 deleterious(0) probably_damaging(1) TCGA-DU-A76L-01 1 248813468 248813468 T G OR2T27 Missense_Mutation p.T240P 0.24 deleterious(0) probably_damaging(1) TCGA-DU-A76L-01 1 68947217 68947217 C T DEPDC1 Missense_Mutation p.R614H 0.27 deleterious(0.01) benign(0.22) TCGA-DU-A76L-01 2 109527350 109527350 G A EDAR Intron 0.37 TCGA-DU-A76L-01 2 219259397 219259397 C T SLC11A1 Silent p.C477C 0.12 TCGA-DU-A76L-01 2 73441468 73441468 T C SMYD5 Missense_Mutation p.V25A 0.28 deleterious(0) benign(0.006) TCGA-DU-A76L-01 3 148756906 148756906 A C HLTF Missense_Mutation p.L909R 0.23 deleterious(0) probably_damaging(1) TCGA-DU-A76L-01 3 164757760 164757760 C A SI Splice_Site p.X720_splice 0.27 TCGA-DU-A76L-01 3 25215976 25215976 C G AC133680.1 3'Flank 0.31 TCGA-DU-A76L-01 3 39307575 39307575 G A CX3CR1 Silent p.T174T 0.22 TCGA-DU-A76L-01 4 141446584 141446587 TGTT - ELMOD2 Frame_Shift_Del p.M1_?2 0.30 TCGA-DU-A76L-01 4 175413028 175413028 A C HPGD 3'UTR 0.44 TCGA-DU-A76L-01 4 70865507 70865507 G A STATH Missense_Mutation p.R28H 0.19 tolerated_low_confidence(0.27) unknown(0) TCGA-DU-A76L-01 4 79461950 79461950 C T FRAS1 Missense_Mutation p.A3904V 0.50 probably_damaging(0.932) TCGA-DU-A76L-01 4 90170394 90170394 G A GPRIN3 Missense_Mutation p.R290C 0.32 tolerated(0.18) benign(0.005) TCGA-DU-A76L-01 4 91229626 91229626 G A CCSER1 Missense_Mutation p.R64H 0.25 deleterious(0) probably_damaging(0.999) TCGA-DU-A76L-01 5 115319115 115319115 T C AQPEP Missense_Mutation p.M276T 0.44 deleterious(0) probably_damaging(0.998) TCGA-DU-A76L-01 5 140751398 140751398 C T PCDHGB3 Silent p.P479P 0.38 TCGA-DU-A76L-01 5 39308393 39308393 T C C9 Silent p.E393E 0.38 TCGA-DU-A76L-01 5 59284544 59284544 C T PDE4D Missense_Mutation p.A15T 0.31 tolerated_low_confidence(0.37) benign(0) TCGA-DU-A76L-01 5 77656524 77656524 C T SCAMP1 Missense_Mutation p.A10V 0.18 deleterious(0.03) benign(0.081) TCGA-DU-A76L-01 6 29323500 29323500 A G OR5V1 Missense_Mutation p.V158A 0.31 tolerated(0.1) possibly_damaging(0.676) TCGA-DU-A76L-01 6 89890145 89890145 C T GABRR1 Missense_Mutation p.V338I 0.35 tolerated(0.6) probably_damaging(0.956) TCGA-DU-A76L-01 6 90472240 90472240 C T MDN1 Silent p.P718P 0.20 TCGA-DU-A76L-01 7 156437435 156437435 G A RNF32 Silent p.P86P 0.18 TCGA-DU-A76L-01 7 64442394 64442394 T C ZNF117 5'UTR 0.24 TCGA-DU-A76L-01 7 98530949 98530949 C T TRRAP Missense_Mutation p.T1313M 0.15 possibly_damaging(0.852) TCGA-DU-A76O-01 10 77159228 77159228 G A ZNF503 Missense_Mutation p.P407L 0.60 tolerated(0.16) possibly_damaging(0.788) TCGA-DU-A76O-01 11 6499304 6499304 G A ARFIP2 Missense_Mutation p.T221M 0.44 deleterious(0) probably_damaging(0.996) TCGA-DU-A76O-01 12 124267721 124267721 G A DNAH10 Silent p.P242P 0.07 TCGA-DU-A76O-01 12 20870144 20870144 A G SLCO1C1 Missense_Mutation p.D252G 0.10 deleterious(0) probably_damaging(0.999) TCGA-DU-A76O-01 12 40013106 40013106 T C ABCD2 Silent p.T104T 0.08 TCGA-DU-A76O-01 12 48188621 48188621 G A HDAC7 Silent p.D460D 0.05 TCGA-DU-A76O-01 12 98927443 98927443 A G TMPO Missense_Mutation p.T470A 0.05 tolerated_low_confidence(0.15) benign(0) TCGA-DU-A76O-01 15 25440073 25440073 G T SNORD115-14 RNA 0.13 TCGA-DU-A76O-01 15 44951348 44951348 G C SPG11 Missense_Mutation p.A199G 0.48 tolerated(0.13) benign(0.025) TCGA-DU-A76O-01 15 68486294 68486294 A T CALML4 3'UTR 0.24 TCGA-DU-A76O-01 15 69238040 69238040 A C SPESP1 Missense_Mutation p.K56T 0.19 tolerated(0.1) possibly_damaging(0.812) TCGA-DU-A76O-01 16 28617374 28617374 C T SULT1A1 Intron 0.10 TCGA-DU-A76O-01 16 8729070 8729070 C A METTL22 Missense_Mutation p.Q201K 0.06 tolerated(0.7) benign(0.01) TCGA-DU-A76O-01 17 33521273 33521273 C T SLC35G3 Silent p.P18P 0.32 TCGA-DU-A76O-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.87 deleterious(0) probably_damaging(0.998) TCGA-DU-A76O-01 17 79511038 79511038 G A C17orf70 Missense_Mutation p.R807C 0.21 deleterious(0) probably_damaging(1) TCGA-DU-A76O-01 18 580584 580584 C T CETN1 Missense_Mutation p.A59V 0.07 deleterious(0.02) possibly_damaging(0.759) TCGA-DU-A76O-01 19 46191718 46191721 TGAC - SNRPD2 Frame_Shift_Del p.V36Rfs*20 0.09 TCGA-DU-A76O-01 19 54726381 54726381 C T LILRB3 Missense_Mutation p.G42R 0.11 tolerated(0.08) benign(0.023) TCGA-DU-A76O-01 1 228588830 228588830 T A TRIM11 Silent p.A190A 0.17 TCGA-DU-A76O-01 20 50701439 50701439 G A ZFP64 Missense_Mutation p.T532M 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-DU-A76O-01 2 100623319 100623319 A G AFF3 Silent p.F241F 0.39 TCGA-DU-A76O-01 2 179631139 179631139 C A TTN Missense_Mutation p.R3224S 0.14 TCGA-DU-A76O-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A76O-01 2 220412401 220412401 C T TMEM198 Missense_Mutation p.R114C 0.21 deleterious(0) possibly_damaging(0.898) TCGA-DU-A76O-01 2 85826350 85826350 T C TMEM150A Missense_Mutation p.Y222C 0.27 deleterious(0) probably_damaging(0.975) TCGA-DU-A76O-01 3 133119064 133119064 C A BFSP2 Missense_Mutation p.A46D 0.32 tolerated(0.1) benign(0.101) TCGA-DU-A76O-01 5 52097257 52097257 C T PELO Silent p.S247S 0.26 TCGA-DU-A76O-01 6 155465814 155465814 T C TIAM2 Missense_Mutation p.F569L 0.09 tolerated(1) benign(0.003) TCGA-DU-A76O-01 9 117853323 117853323 T C TNC 5'UTR 0.16 TCGA-DU-A76O-01 9 131399216 131399216 C T WDR34 Missense_Mutation p.V176M 0.14 deleterious(0) possibly_damaging(0.634) TCGA-DU-A76O-01 X 131762930 131762930 T C HS6ST2 Missense_Mutation p.D420G 0.31 tolerated(0.09) benign(0.038) TCGA-DU-A76O-01 X 76874351 76874351 C A ATRX Missense_Mutation p.D1791Y 0.53 probably_damaging(1) TCGA-DU-A76O-01 X 76890194 76890194 C T ATRX Missense_Mutation p.G1567D 0.05 probably_damaging(0.999) TCGA-DU-A76O-01 X 76938029 76938029 G A ATRX Nonsense_Mutation p.R907* 0.12 TCGA-DU-A76R-01 10 123845220 123845220 G A TACC2 Missense_Mutation p.G1069R 0.08 benign(0.001) TCGA-DU-A76R-01 10 125804102 125804102 G A CHST15 Missense_Mutation p.R294C 0.40 deleterious(0.03) possibly_damaging(0.679) TCGA-DU-A76R-01 10 90673204 90673204 G A STAMBPL1 Missense_Mutation p.S256N 0.43 tolerated(0.07) possibly_damaging(0.827) TCGA-DU-A76R-01 11 129722502 129722502 A C TMEM45B Missense_Mutation p.Y42S 0.08 tolerated(0.13) benign(0.027) TCGA-DU-A76R-01 11 62298554 62298554 G A AHNAK Missense_Mutation p.A1112V 0.16 benign(0.124) TCGA-DU-A76R-01 12 10145811 10145811 G A CLEC1B Silent p.F207F 0.23 TCGA-DU-A76R-01 12 132262624 132262624 G A SFSWAP Silent p.T719T 0.30 TCGA-DU-A76R-01 12 23716299 23716299 G C SOX5 Missense_Mutation p.Q461E 0.32 deleterious(0.02) benign(0.034) TCGA-DU-A76R-01 12 50035727 50035727 G A PRPF40B Missense_Mutation p.E602K 0.20 deleterious(0) probably_damaging(0.954) TCGA-DU-A76R-01 12 58087892 58087892 G A OS9 5'Flank 0.08 TCGA-DU-A76R-01 14 56084854 56084854 T C KTN1 Splice_Site p.X278_splice 0.27 TCGA-DU-A76R-01 15 42153664 42153664 G A SPTBN5 Missense_Mutation p.R2590C 0.49 benign(0.002) TCGA-DU-A76R-01 15 50905958 50905958 C T TRPM7 Silent p.K572K 0.14 TCGA-DU-A76R-01 15 53908182 53908182 C T WDR72 Missense_Mutation p.A741T 0.18 tolerated(0.63) benign(0.015) TCGA-DU-A76R-01 15 79292184 79292184 C T RASGRF1 Missense_Mutation p.A899T 0.45 tolerated(0.3) benign(0.007) TCGA-DU-A76R-01 16 1614053 1614053 C T IFT140 Missense_Mutation p.R671H 0.27 tolerated(0.12) benign(0.012) TCGA-DU-A76R-01 16 31230715 31230715 C T TRIM72 Missense_Mutation p.R198W 0.15 deleterious(0.05) benign(0.004) TCGA-DU-A76R-01 17 10432210 10432210 G A MYH2 Missense_Mutation p.R1181C 0.16 deleterious(0.03) probably_damaging(0.991) TCGA-DU-A76R-01 17 34304693 34304693 G A CCL16 Missense_Mutation p.P91L 0.25 tolerated(0.25) probably_damaging(0.927) TCGA-DU-A76R-01 17 48918243 48918243 G A WFIKKN2 Missense_Mutation p.E532K 0.26 tolerated(0.14) benign(0.111) TCGA-DU-A76R-01 17 57744174 57744174 T G CLTC Missense_Mutation p.F655C 0.35 deleterious(0) probably_damaging(1) TCGA-DU-A76R-01 17 7750173 7750173 C G KDM6B Missense_Mutation p.P250A 0.38 unknown(0) TCGA-DU-A76R-01 18 52602091 52602091 T C CCDC68 Missense_Mutation p.Q187R 0.13 tolerated(0.73) benign(0.014) TCGA-DU-A76R-01 19 12430201 12430201 C T ZNF563 Missense_Mutation p.R213H 0.42 tolerated(0.08) benign(0.016) TCGA-DU-A76R-01 19 42584408 42584408 C G ZNF574 Silent p.P550P 0.67 TCGA-DU-A76R-01 1 11115092 11115092 G A SRM Missense_Mutation p.A272V 0.79 tolerated(0.16) benign(0.001) TCGA-DU-A76R-01 1 176525894 176525894 G A PAPPA2 Missense_Mutation p.A146T 0.13 tolerated_low_confidence(1) benign(0) TCGA-DU-A76R-01 1 196871561 196871561 T C CFHR4 Silent p.C23C 0.06 TCGA-DU-A76R-01 1 211526628 211526628 G A TRAF5 Missense_Mutation p.R16H 0.15 deleterious(0.04) benign(0.091) TCGA-DU-A76R-01 1 226924704 226924704 C T ITPKB Silent p.A152A 0.20 TCGA-DU-A76R-01 2 196728873 196728873 C T DNAH7 Silent p.Q2502Q 0.42 TCGA-DU-A76R-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A76R-01 2 6989960 6989960 C T CMPK2 3'UTR 0.43 TCGA-DU-A76R-01 3 108117645 108117645 C T MYH15 Missense_Mutation p.D1678N 0.06 deleterious(0.05) benign(0.052) TCGA-DU-A76R-01 3 108353774 108353774 C T DZIP3 Silent p.C291C 0.06 TCGA-DU-A76R-01 3 164907773 164907773 G T SLITRK3 Silent p.P282P 0.17 TCGA-DU-A76R-01 3 178916944 178916944 A G PIK3CA Missense_Mutation p.K111E 0.41 deleterious(0.03) probably_damaging(0.983) TCGA-DU-A76R-01 3 52525392 52525392 C T NISCH Missense_Mutation p.T1256M 0.48 deleterious(0) benign(0.412) TCGA-DU-A76R-01 4 113565994 113565994 C A LARP7 Missense_Mutation p.L64I 0.25 deleterious(0) probably_damaging(0.985) TCGA-DU-A76R-01 4 148985641 148985641 G A ARHGAP10 Missense_Mutation p.G752E 0.22 deleterious(0) probably_damaging(1) TCGA-DU-A76R-01 4 177142621 177142621 G A ASB5 Missense_Mutation p.T172M 0.11 tolerated(0.05) benign(0.02) TCGA-DU-A76R-01 4 9998546 9998546 T C SLC2A9 Missense_Mutation p.N90S 0.06 deleterious(0.03) probably_damaging(0.936) TCGA-DU-A76R-01 5 169533422 169533422 C T FOXI1 Missense_Mutation p.A154V 0.53 deleterious(0) probably_damaging(0.993) TCGA-DU-A76R-01 6 132874313 132874313 C T TAAR8 Missense_Mutation p.T161M 0.04 tolerated(0.16) benign(0.046) TCGA-DU-A76R-01 6 134491421 134491421 C T SGK1 Silent p.T522T 0.23 TCGA-DU-A76R-01 7 107823282 107823282 G A NRCAM Missense_Mutation p.T796I 0.41 tolerated(0.12) possibly_damaging(0.673) TCGA-DU-A76R-01 7 74193659 74193659 G A NCF1 Missense_Mutation p.E96K 0.36 deleterious(0.01) benign(0.085) TCGA-DU-A76R-01 7 86415889 86415889 C T GRM3 Nonsense_Mutation p.R261* 0.22 TCGA-DU-A76R-01 7 92733350 92733350 G A SAMD9 Silent p.G687G 0.17 TCGA-DU-A76R-01 8 146076589 146076589 C T COMMD5 Silent p.R45R 0.48 TCGA-DU-A76R-01 9 107332225 107332225 C T OR13C8 Silent p.Y259Y 0.18 TCGA-DU-A76R-01 X 78427140 78427140 G A GPR174 Silent p.L212L 0.29 TCGA-DU-A76R-01 X 83730327 83730331 TTTGA - HDX Frame_Shift_Del p.N25Kfs*2 0.24 TCGA-DU-A7T6-01 10 24834864 24834864 C G KIAA1217 Missense_Mutation p.L1815V 0.16 tolerated(0.7) benign(0.012) TCGA-DU-A7T6-01 10 49420076 49420076 C A FRMPD2 Missense_Mutation p.R511L 0.12 tolerated(0.62) possibly_damaging(0.73) TCGA-DU-A7T6-01 10 50122062 50122062 G C LRRC18 Missense_Mutation p.L47V 0.17 deleterious(0.01) possibly_damaging(0.542) TCGA-DU-A7T6-01 10 54530513 54530513 C T MBL2 Missense_Mutation p.G74E 0.26 deleterious(0) probably_damaging(0.998) TCGA-DU-A7T6-01 10 98924616 98924616 G A SLIT1 Missense_Mutation p.H77Y 0.34 tolerated(1) benign(0.173) TCGA-DU-A7T6-01 11 119060331 119060331 C T PDZD3 3'UTR 0.36 TCGA-DU-A7T6-01 11 122805551 122805554 AAAG - C11orf63 Frame_Shift_Del p.R470Dfs*23 0.17 TCGA-DU-A7T6-01 11 1269713 1269713 C G MUC5B Missense_Mutation p.T3868S 0.14 unknown(0) TCGA-DU-A7T6-01 11 2940615 2940615 C G SLC22A18 Missense_Mutation p.S281C 0.11 deleterious(0) probably_damaging(0.971) TCGA-DU-A7T6-01 11 48238763 48238763 C G OR4B1 Missense_Mutation p.I134M 0.15 tolerated(1) benign(0.001) TCGA-DU-A7T6-01 11 557686 557686 C T C11orf35 Intron 0.38 TCGA-DU-A7T6-01 11 68682348 68682348 C G IGHMBP2 Missense_Mutation p.L257V 0.16 tolerated(0.29) benign(0.006) TCGA-DU-A7T6-01 11 69458623 69458623 C G CCND1 Missense_Mutation p.N146K 0.16 tolerated(0.24) possibly_damaging(0.869) TCGA-DU-A7T6-01 11 94038838 94038838 G A FOLR4 Nonsense_Mutation p.W12* 0.07 TCGA-DU-A7T6-01 11 9519288 9519288 A C ZNF143 Missense_Mutation p.N303T 0.30 tolerated(0.61) benign(0.02) TCGA-DU-A7T6-01 12 120546229 120546229 G C RAB35 Missense_Mutation p.T32S 0.20 tolerated(0.4) benign(0.004) TCGA-DU-A7T6-01 12 123678974 123678974 T C MPHOSPH9 Missense_Mutation p.K582E 0.35 deleterious(0) probably_damaging(0.999) TCGA-DU-A7T6-01 12 6103064 6103064 C T VWF Missense_Mutation p.G2188R 0.23 tolerated(0.05) probably_damaging(0.995) TCGA-DU-A7T6-01 12 76442103 76442106 TACC - NAP1L1 3'UTR 0.27 TCGA-DU-A7T6-01 12 77242026 77242026 C G ZDHHC17 Missense_Mutation p.H507Q 0.11 tolerated(0.08) benign(0.099) TCGA-DU-A7T6-01 13 109777629 109777629 G C MYO16 Silent p.R1213R 0.47 TCGA-DU-A7T6-01 13 111109707 111109707 A G COL4A2 Missense_Mutation p.K453E 0.16 probably_damaging(0.968) TCGA-DU-A7T6-01 13 26411376 26411376 C T ATP8A2 Missense_Mutation p.P944S 0.10 deleterious(0) probably_damaging(1) TCGA-DU-A7T6-01 13 60490363 60490363 G A DIAPH3 Missense_Mutation p.R731W 0.14 deleterious(0) probably_damaging(0.999) TCGA-DU-A7T6-01 14 105945517 105945517 G C CRIP2 Missense_Mutation p.E228D 0.15 tolerated(0.06) benign(0.069) TCGA-DU-A7T6-01 14 20612565 20612565 G A OR4N5 Missense_Mutation p.R224H 0.16 tolerated(0.57) benign(0.004) TCGA-DU-A7T6-01 14 25043978 25043978 C G CTSG Missense_Mutation p.R81T 0.15 tolerated(0.1) benign(0.367) TCGA-DU-A7T6-01 14 70713352 70713352 C T ADAM21P1 RNA 0.22 TCGA-DU-A7T6-01 14 81965656 81965656 T A SEL1L Intron 0.35 TCGA-DU-A7T6-01 14 94849110 94849110 C T SERPINA1 Silent p.L155L 0.30 TCGA-DU-A7T6-01 15 33955887 33955887 G A RYR3 Silent p.A1856A 0.50 TCGA-DU-A7T6-01 15 43653198 43653198 T G ZSCAN29 3'UTR 0.57 TCGA-DU-A7T6-01 15 56395801 56395801 C G RFX7 Missense_Mutation p.V157L 0.29 deleterious(0.01) benign(0.217) TCGA-DU-A7T6-01 15 99500523 99500523 G C IGF1R Missense_Mutation p.R1319T 0.14 tolerated(0.06) benign(0.021) TCGA-DU-A7T6-01 16 2159762 2159762 C G PKD1 Silent p.V1802V 0.31 TCGA-DU-A7T6-01 16 23569512 23569512 G C UBFD1 Missense_Mutation p.K89N 0.14 deleterious(0.02) possibly_damaging(0.864) TCGA-DU-A7T6-01 16 27374364 27374364 C A IL4R Missense_Mutation p.A564D 0.25 deleterious(0) possibly_damaging(0.856) TCGA-DU-A7T6-01 16 48399314 48399314 C T SIAH1 Silent p.R25R 0.11 TCGA-DU-A7T6-01 16 61687749 61687749 G T CDH8 Silent p.V721V 0.16 TCGA-DU-A7T6-01 16 67401214 67401214 G A LRRC36 Missense_Mutation p.R350K 0.04 tolerated_low_confidence(0.51) benign(0.019) TCGA-DU-A7T6-01 16 69988452 69988452 C T CLEC18A Silent p.N144N 0.16 TCGA-DU-A7T6-01 17 11607666 11607666 C T DNAH9 Silent p.G1766G 0.05 TCGA-DU-A7T6-01 17 33849880 33849880 C T SLFN12L 5'UTR 0.21 TCGA-DU-A7T6-01 17 36353621 36353621 C T RP11-1407O15.2 Missense_Mutation p.D414N 0.16 TCGA-DU-A7T6-01 17 39646040 39646040 G C KRT36 Missense_Mutation p.S26C 0.13 deleterious(0.03) benign(0.003) TCGA-DU-A7T6-01 17 42225301 42225301 C T C17orf53 Missense_Mutation p.P44S 0.30 tolerated(0.05) possibly_damaging(0.453) TCGA-DU-A7T6-01 17 45668227 45668227 G A NPEPPS Missense_Mutation p.D414N 0.10 tolerated(0.32) benign(0.033) TCGA-DU-A7T6-01 17 60140431 60140431 A G MED13 Missense_Mutation p.S100P 0.05 tolerated(0.24) benign(0.202) TCGA-DU-A7T6-01 17 61483525 61483525 T - TANC2 Frame_Shift_Del p.L1086Yfs*19 0.30 TCGA-DU-A7T6-01 17 79428112 79428116 GCACA - RP11-1055B8.7 Frame_Shift_Del p.H2142Rfs*44 0.49 TCGA-DU-A7T6-01 18 72775721 72775721 G C ZNF407 Missense_Mutation p.G2015A 0.15 tolerated(0.2) benign(0.211) TCGA-DU-A7T6-01 19 11833735 11833735 C G ZNF823 Missense_Mutation p.S205T 0.15 tolerated(0.3) benign(0.049) TCGA-DU-A7T6-01 19 23406026 23406026 C G ZNF724P Missense_Mutation p.E341Q 0.15 tolerated(0.08) possibly_damaging(0.828) TCGA-DU-A7T6-01 19 3179151 3179151 C T S1PR4 Missense_Mutation p.R121W 0.19 deleterious(0) probably_damaging(1) TCGA-DU-A7T6-01 19 42794734 42794735 GT - CIC Frame_Shift_Del p.V606Gfs*83 0.44 TCGA-DU-A7T6-01 19 45176219 45176219 C T CEACAM19 Missense_Mutation p.T136I 0.55 deleterious(0.05) possibly_damaging(0.647) TCGA-DU-A7T6-01 19 54963363 54963363 G A LENG8 Silent p.Q44Q 0.09 TCGA-DU-A7T6-01 19 56443629 56443629 G A NLRP13 Missense_Mutation p.L17F 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-DU-A7T6-01 19 6664977 6664977 C T TNFSF14 Missense_Mutation p.R228H 0.24 tolerated(0.11) benign(0.077) TCGA-DU-A7T6-01 19 9089401 9089401 C G MUC16 Missense_Mutation p.S805T 0.33 unknown(0) TCGA-DU-A7T6-01 1 114964058 114964058 C A TRIM33 Missense_Mutation p.Q687H 0.51 deleterious(0) benign(0.293) TCGA-DU-A7T6-01 1 226127198 226127198 C G LEFTY2 Missense_Mutation p.Q200H 0.16 deleterious(0) possibly_damaging(0.83) TCGA-DU-A7T6-01 1 228113078 228113078 C G WNT9A Missense_Mutation p.E80Q 0.23 tolerated(0.08) benign(0.266) TCGA-DU-A7T6-01 1 238049138 238049138 G A ZP4 Silent p.I296I 0.15 TCGA-DU-A7T6-01 20 55027547 55027547 G A CASS4 Missense_Mutation p.V439M 0.51 tolerated(0.12) benign(0.091) TCGA-DU-A7T6-01 20 60992299 60992299 G T RBBP8NL Missense_Mutation p.L61M 0.28 deleterious(0.01) probably_damaging(0.977) TCGA-DU-A7T6-01 21 32493110 32493110 G A TIAM1 Missense_Mutation p.A1451V 0.18 tolerated(0.63) benign(0.003) TCGA-DU-A7T6-01 21 45971301 45971301 G C KRTAP10-2 Missense_Mutation p.T14S 0.12 tolerated(1) possibly_damaging(0.678) TCGA-DU-A7T6-01 21 45971348 45971348 G C KRTAP10-2 5'UTR 0.11 TCGA-DU-A7T6-01 22 23613769 23613769 C G BCR Missense_Mutation p.N637K 0.18 tolerated(0.27) probably_damaging(0.913) TCGA-DU-A7T6-01 22 30163518 30163518 A G UQCR10 Missense_Mutation p.Y44C 0.15 tolerated(0.08) probably_damaging(0.976) TCGA-DU-A7T6-01 22 30421720 30421720 G C MTMR3 Missense_Mutation p.S1176T 0.19 tolerated(0.15) possibly_damaging(0.803) TCGA-DU-A7T6-01 2 10008510 10008510 G A TAF1B Missense_Mutation p.D169N 0.45 tolerated(0.09) benign(0.013) TCGA-DU-A7T6-01 2 102956584 102956584 C T IL1RL1 Missense_Mutation p.A100V 0.30 tolerated(1) benign(0.004) TCGA-DU-A7T6-01 2 114508047 114508047 C T SLC35F5 Nonsense_Mutation p.W124* 0.44 TCGA-DU-A7T6-01 2 162279930 162279930 C G TBR1 Missense_Mutation p.S414W 0.09 deleterious(0) benign(0.422) TCGA-DU-A7T6-01 2 179453777 179453777 C T TTN Missense_Mutation p.G20892D 0.16 TCGA-DU-A7T6-01 2 203162609 203162610 AG - NOP58 Frame_Shift_Del p.E417Kfs*3 0.10 TCGA-DU-A7T6-01 2 20870684 20870684 C G GDF7 Missense_Mutation p.I284M 0.44 tolerated(0.35) probably_damaging(0.924) TCGA-DU-A7T6-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A7T6-01 2 239039021 239039021 C G ESPNL Missense_Mutation p.P556A 0.40 deleterious(0.03) benign(0.018) TCGA-DU-A7T6-01 2 27480105 27480105 C T SLC30A3 Missense_Mutation p.V232I 0.33 deleterious(0.04) benign(0.309) TCGA-DU-A7T6-01 2 86831619 86831619 G A RNF103 Missense_Mutation p.P469S 0.18 tolerated(0.11) probably_damaging(0.999) TCGA-DU-A7T6-01 2 8998901 8998901 T A MBOAT2 Missense_Mutation p.N491Y 0.40 deleterious(0.01) benign(0.406) TCGA-DU-A7T6-01 3 121151849 121151849 C T POLQ Missense_Mutation p.M2525I 0.09 tolerated(0.12) benign(0.034) TCGA-DU-A7T6-01 3 135721813 135721815 ATT - PPP2R3A In_Frame_Del p.K491_F492delinsN 0.44 TCGA-DU-A7T6-01 3 137880745 137880745 C T DBR1 Missense_Mutation p.D541N 0.34 tolerated_low_confidence(0.16) unknown(0) TCGA-DU-A7T6-01 3 169540297 169540297 C T LRRIQ4 Silent p.D196D 0.28 TCGA-DU-A7T6-01 3 186435263 186435263 C G KNG1 5'UTR 0.21 TCGA-DU-A7T6-01 3 44803239 44803239 C T KIF15 5'UTR 0.39 TCGA-DU-A7T6-01 3 46620761 46620761 A G TDGF1 Missense_Mutation p.Y43C 0.37 deleterious(0) benign(0.008) TCGA-DU-A7T6-01 3 51992879 51992879 C G PCBP4 Missense_Mutation p.A284P 0.12 deleterious(0) possibly_damaging(0.707) TCGA-DU-A7T6-01 3 77645827 77645827 C G ROBO2 Missense_Mutation p.S943C 0.12 deleterious(0) possibly_damaging(0.7) TCGA-DU-A7T6-01 3 88040261 88040261 G A HTR1F Missense_Mutation p.R121Q 0.26 deleterious(0) probably_damaging(1) TCGA-DU-A7T6-01 3 95374237 95374237 G A MTHFD2P1 RNA 0.31 TCGA-DU-A7T6-01 3 98507067 98507068 - T ST3GAL6 Splice_Site p.X206_splice 0.29 TCGA-DU-A7T6-01 4 153691335 153691335 C T TIGD4 Silent p.E274E 0.15 TCGA-DU-A7T6-01 4 187539809 187539809 T C FAT1 Missense_Mutation p.E2644G 0.32 benign(0.261) TCGA-DU-A7T6-01 4 3769015 3769015 C G ADRA2C Missense_Mutation p.L228V 0.12 deleterious(0) possibly_damaging(0.824) TCGA-DU-A7T6-01 4 74735501 74735501 C G CXCL1 Silent p.T72T 0.13 TCGA-DU-A7T6-01 4 81121392 81121392 A G PRDM8 Missense_Mutation p.D53G 0.20 deleterious(0) benign(0.173) TCGA-DU-A7T6-01 5 113698753 113698753 G C KCNN2 Missense_Mutation p.G94A 0.18 tolerated(0.71) unknown(0) TCGA-DU-A7T6-01 5 131409573 131409573 C T CSF2 Silent p.P19P 0.05 TCGA-DU-A7T6-01 5 140627084 140627084 C G PCDHB15 Missense_Mutation p.D646E 0.22 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-DU-A7T6-01 5 167379648 167379648 C G TENM2 Missense_Mutation p.H256Q 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.529) TCGA-DU-A7T6-01 5 180047675 180047675 G C FLT4 Silent p.V780V 0.10 TCGA-DU-A7T6-01 5 653279 653279 G C CEP72 3'UTR 0.22 TCGA-DU-A7T6-01 5 72743502 72743502 G C FOXD1 Missense_Mutation p.P229R 0.20 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-DU-A7T6-01 5 80064755 80064755 A G MSH3 Missense_Mutation p.H729R 0.12 deleterious(0.01) possibly_damaging(0.548) TCGA-DU-A7T6-01 6 111543214 111543214 C T SLC16A10 Missense_Mutation p.R442C 0.18 deleterious(0.02) probably_damaging(0.932) TCGA-DU-A7T6-01 6 28093396 28093396 C T ZSCAN16 Missense_Mutation p.L59F 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-DU-A7T6-01 6 43152296 43152296 G A CUL9 Missense_Mutation p.R83Q 0.24 deleterious(0.04) benign(0.003) TCGA-DU-A7T6-01 7 100334235 100334235 G A ZAN Missense_Mutation p.G79E 0.79 probably_damaging(0.999) TCGA-DU-A7T6-01 7 128482936 128482936 C G FLNC Missense_Mutation p.N826K 0.22 deleterious(0.01) probably_damaging(1) TCGA-DU-A7T6-01 7 138603381 138603381 G C KIAA1549 Missense_Mutation p.Q331E 0.16 tolerated(0.29) benign(0.004) TCGA-DU-A7T6-01 7 154862767 154862767 C T HTR5A-AS1 Missense_Mutation p.A83T 0.09 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-DU-A7T6-01 7 27224559 27224559 G C HOXA11 Missense_Mutation p.P69A 0.07 tolerated(0.34) benign(0.168) TCGA-DU-A7T6-01 7 37903019 37903019 G C NME8 Missense_Mutation p.D137H 0.09 deleterious(0.01) probably_damaging(0.928) TCGA-DU-A7T6-01 7 57188424 57188424 A G ZNF479 Missense_Mutation p.I233T 0.47 tolerated(0.22) benign(0.369) TCGA-DU-A7T6-01 8 10480690 10480690 C A RP1L1 Missense_Mutation p.A8S 0.40 possibly_damaging(0.871) TCGA-DU-A7T6-01 8 119452089 119452089 T G SAMD12 Missense_Mutation p.K102Q 0.38 tolerated(0.07) possibly_damaging(0.505) TCGA-DU-A7T6-01 8 144997377 144997377 C G PLEC Silent p.L2377L 0.10 TCGA-DU-A7T6-01 8 41397213 41397213 C T GINS4 Missense_Mutation p.P105L 0.42 tolerated(0.67) benign(0.133) TCGA-DU-A7T6-01 8 56015369 56015369 C G XKR4 Nonsense_Mutation p.Y107* 0.12 TCGA-DU-A7T6-01 8 95189844 95189844 T C CDH17 Missense_Mutation p.R86G 0.25 tolerated(1) possibly_damaging(0.809) TCGA-DU-A7T6-01 9 123742403 123742403 G A C5 Missense_Mutation p.R1206C 0.27 tolerated(0.12) benign(0.004) TCGA-DU-A7T6-01 9 137708918 137708918 G A COL5A1 Missense_Mutation p.G1390E 0.20 unknown(0) TCGA-DU-A7T6-01 9 35389883 35389883 G A UNC13B Missense_Mutation p.R963Q 0.47 tolerated(0.24) benign(0.017) TCGA-DU-A7T6-01 9 95797674 95797674 G C FGD3 Missense_Mutation p.D661H 0.25 deleterious(0.04) probably_damaging(0.94) TCGA-DU-A7T6-01 X 122318245 122318245 G C GRIA3 5'UTR 0.22 TCGA-DU-A7T6-01 X 128631957 128631957 G C SMARCA1 Missense_Mutation p.R457G 0.13 deleterious(0) probably_damaging(1) TCGA-DU-A7T6-01 X 129290463 129290463 C G AIFM1 Missense_Mutation p.G74A 0.11 tolerated(0.16) possibly_damaging(0.45) TCGA-DU-A7T6-01 X 152826216 152826216 C T ATP2B3 Silent p.N974N 0.36 TCGA-DU-A7T6-01 X 19953961 19953961 C T CXorf23 Missense_Mutation p.G610E 0.14 tolerated(1) benign(0.005) TCGA-DU-A7T6-01 X 27998066 27998066 G C DCAF8L1 Silent p.V462V 0.27 TCGA-DU-A7T6-01 X 29938151 29938151 T C IL1RAPL1 Missense_Mutation p.S333P 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-DU-A7T6-01 X 31854865 31854865 G C DMD Nonsense_Mutation p.Y2390* 0.35 TCGA-DU-A7T6-01 X 75651163 75651163 G T MAGEE1 Missense_Mutation p.G947V 0.40 deleterious(0) possibly_damaging(0.834) TCGA-DU-A7T6-01 X 8138193 8138193 C G VCX2 Missense_Mutation p.Q100H 0.18 deleterious_low_confidence(0) unknown(0) TCGA-DU-A7T8-01 10 24813330 24813330 C T KIAA1217 Silent p.A845A 0.07 TCGA-DU-A7T8-01 11 105769151 105769151 A G GRIA4 Missense_Mutation p.K295E 0.35 tolerated(0.05) benign(0.358) TCGA-DU-A7T8-01 11 62342669 62342669 C T TUT1 Missense_Mutation p.R879Q 0.05 tolerated(0.8) benign(0) TCGA-DU-A7T8-01 12 30843474 30843474 C T IPO8 Missense_Mutation p.R41Q 0.17 tolerated(1) benign(0.001) TCGA-DU-A7T8-01 12 7475909 7475909 A G ACSM4 Missense_Mutation p.Q402R 0.30 deleterious(0.04) possibly_damaging(0.606) TCGA-DU-A7T8-01 14 105518014 105518014 G A GPR132 Missense_Mutation p.R154C 0.52 deleterious(0.02) probably_damaging(0.958) TCGA-DU-A7T8-01 14 95669569 95669569 T C CLMN Missense_Mutation p.E706G 0.35 tolerated(0.06) possibly_damaging(0.642) TCGA-DU-A7T8-01 16 67267991 67267991 G A FHOD1 Missense_Mutation p.L539F 0.38 deleterious(0.04) probably_damaging(0.997) TCGA-DU-A7T8-01 17 7579329 7579329 T C TP53 Missense_Mutation p.K120E 0.55 deleterious(0) probably_damaging(0.999) TCGA-DU-A7T8-01 19 12976207 12976207 T C MAST1 Silent p.A572A 0.07 TCGA-DU-A7T8-01 1 33960315 33960315 G C ZSCAN20 Missense_Mutation p.E791Q 0.24 deleterious(0) possibly_damaging(0.803) TCGA-DU-A7T8-01 1 70587610 70587610 T C LRRC7 3'UTR 0.72 TCGA-DU-A7T8-01 1 75596326 75596326 A C LHX8 5'UTR 0.33 TCGA-DU-A7T8-01 2 202149727 202149727 G A CASP8 Missense_Mutation p.A390T 0.37 deleterious(0.02) benign(0.246) TCGA-DU-A7T8-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A7T8-01 2 219305467 219305467 A G VIL1 Missense_Mutation p.D751G 0.31 tolerated(0.34) benign(0) TCGA-DU-A7T8-01 3 57294042 57294042 T - APPL1 Frame_Shift_Del p.L552* 0.29 TCGA-DU-A7T8-01 6 90397870 90397870 A C MDN1 Missense_Mutation p.I3761S 0.42 possibly_damaging(0.776) TCGA-DU-A7T8-01 7 151945155 151945155 A T KMT2C Silent p.S788S 0.05 TCGA-DU-A7T8-01 7 99097753 99097753 T C ZNF394 5'UTR 0.68 TCGA-DU-A7T8-01 8 143999219 143999219 G A CYP11B2 Missense_Mutation p.A13V 0.65 tolerated(0.12) benign(0.001) TCGA-DU-A7T8-01 X 76939375 76939375 G T ATRX Nonsense_Mutation p.S458* 0.90 TCGA-DU-A7TA-01 10 21139359 21139359 G C NEBL Missense_Mutation p.Q361E 0.36 tolerated(0.21) probably_damaging(0.981) TCGA-DU-A7TA-01 10 98741872 98741872 G C C10orf12 Missense_Mutation p.R242T 0.11 tolerated(0.43) benign(0.168) TCGA-DU-A7TA-01 11 110479714 110479714 G C ARHGAP20 Missense_Mutation p.L257V 0.03 deleterious(0) probably_damaging(0.999) TCGA-DU-A7TA-01 11 58892666 58892666 C T FAM111B Missense_Mutation p.R366W 0.16 deleterious(0) benign(0.424) TCGA-DU-A7TA-01 13 96665687 96665690 TTTG - UGGT2 Frame_Shift_Del p.N177Kfs*7 0.49 TCGA-DU-A7TA-01 15 90631838 90631838 C A IDH2 Missense_Mutation p.R172M 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-DU-A7TA-01 16 18823290 18823293 CTGA - SMG1 Frame_Shift_Del p.V3593Efs*17 0.38 TCGA-DU-A7TA-01 16 848399 848399 G A GNG13 3'UTR 0.44 TCGA-DU-A7TA-01 17 44408247 44408247 G A LRRC37A Missense_Mutation p.E1202K 0.74 tolerated(1) benign(0.004) TCGA-DU-A7TA-01 17 5039223 5039223 G A USP6 Missense_Mutation p.G222R 0.20 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-DU-A7TA-01 17 7579323 7579324 - A TP53 Frame_Shift_Ins p.V122Cfs*27 0.37 TCGA-DU-A7TA-01 19 10602360 10602360 G A KEAP1 Silent p.C406C 0.39 TCGA-DU-A7TA-01 19 55351024 55351024 C T KIR2DS4 Missense_Mutation p.T171M 0.83 tolerated_low_confidence(0.08) possibly_damaging(0.664) TCGA-DU-A7TA-01 19 56733663 56733663 G C ZSCAN5A Missense_Mutation p.P258A 0.27 deleterious(0.04) benign(0.11) TCGA-DU-A7TA-01 19 58805612 58805612 G C ZNF8 Missense_Mutation p.Q146H 0.15 tolerated(0.09) benign(0.011) TCGA-DU-A7TA-01 19 9049380 9049380 T C MUC16 Missense_Mutation p.T10751A 0.44 benign(0.294) TCGA-DU-A7TA-01 1 160054019 160054019 G C KCNJ9 Missense_Mutation p.A67P 0.10 deleterious(0.02) probably_damaging(0.951) TCGA-DU-A7TA-01 1 163044190 163044192 AGA - RGS4 In_Frame_Del p.K252del 0.48 TCGA-DU-A7TA-01 1 186645672 186645672 G A PTGS2 Silent p.C299C 0.21 TCGA-DU-A7TA-01 1 205068185 205068185 A G RBBP5 Missense_Mutation p.V343A 0.42 tolerated(0.09) probably_damaging(0.97) TCGA-DU-A7TA-01 1 75072290 75072290 T C C1orf173 Missense_Mutation p.K495R 0.43 deleterious(0.02) possibly_damaging(0.777) TCGA-DU-A7TA-01 22 30811775 30811776 AT - SEC14L2 Frame_Shift_Del p.I232Qfs*3 0.42 TCGA-DU-A7TA-01 2 141291650 141291650 C A LRP1B Missense_Mutation p.G2568C 0.43 benign(0.278) TCGA-DU-A7TA-01 2 158178296 158178296 C G ERMN Missense_Mutation p.Q127H 0.20 tolerated(0.16) probably_damaging(0.922) TCGA-DU-A7TA-01 2 182358103 182358103 T C ITGA4 Missense_Mutation p.I402T 0.42 deleterious(0) probably_damaging(1) TCGA-DU-A7TA-01 2 220413838 220413838 G A TMEM198 Intron 0.08 TCGA-DU-A7TA-01 3 10379897 10379897 A C ATP2B2 Missense_Mutation p.I1128S 0.06 deleterious(0.05) probably_damaging(0.998) TCGA-DU-A7TA-01 3 14154514 14154514 T G CHCHD4 Missense_Mutation p.Y114S 0.39 deleterious(0) probably_damaging(0.933) TCGA-DU-A7TA-01 3 169513409 169513409 A G LRRC34 Intron 0.45 TCGA-DU-A7TA-01 3 193036786 193036786 A C ATP13A5 Nonsense_Mutation p.L676* 0.43 TCGA-DU-A7TA-01 3 25646328 25646328 G C TOP2B Missense_Mutation p.S1466C 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-DU-A7TA-01 3 25646358 25646358 G C TOP2B Nonsense_Mutation p.S1456* 0.16 TCGA-DU-A7TA-01 4 39271708 39271708 T A WDR19 Nonsense_Mutation p.Y1157* 0.19 TCGA-DU-A7TA-01 4 89190005 89190005 T C PPM1K Missense_Mutation p.I199V 0.30 tolerated(0.3) benign(0.001) TCGA-DU-A7TA-01 5 176026278 176026278 C T GPRIN1 Silent p.E186E 0.36 TCGA-DU-A7TA-01 5 60170485 60170485 G A ERCC8 Missense_Mutation p.P383L 0.43 tolerated(0.13) benign(0.001) TCGA-DU-A7TA-01 6 56919323 56919325 AAT - KIAA1586 In_Frame_Del p.N678del 0.23 TCGA-DU-A7TA-01 7 100198630 100198630 G A FBXO24 3'UTR 0.25 TCGA-DU-A7TA-01 7 158669356 158669359 AGAG - WDR60 Frame_Shift_Del p.R183Kfs*134 0.32 TCGA-DU-A7TA-01 7 42079655 42079655 A T GLI3 Nonsense_Mutation p.L337* 0.30 TCGA-DU-A7TA-01 7 92887696 92887696 A G CCDC132 Missense_Mutation p.M190V 0.14 deleterious(0.01) benign(0.012) TCGA-DU-A7TA-01 7 98655082 98655082 C T SMURF1 Missense_Mutation p.R99Q 0.03 deleterious(0.03) benign(0.146) TCGA-DU-A7TA-01 8 55534814 55534814 C G RP1 Nonsense_Mutation p.Y251* 0.31 TCGA-DU-A7TA-01 9 15469946 15469948 CTC - PSIP1 In_Frame_Del p.E341del 0.36 TCGA-DU-A7TA-01 9 34311231 34311233 CTT - KIF24 In_Frame_Del p.K38del 0.19 TCGA-DU-A7TA-01 9 34637514 34637514 C A SIGMAR1 Intron 0.29 TCGA-DU-A7TA-01 X 76777841 76777841 G - ATRX Frame_Shift_Del p.P2292Qfs*28 0.53 TCGA-DU-A7TB-01 10 61958141 61958141 G A ANK3 Missense_Mutation p.A549V 0.13 benign(0.067) TCGA-DU-A7TB-01 11 124619648 124619648 C T VSIG2 Missense_Mutation p.R181H 0.39 tolerated(0.4) benign(0.01) TCGA-DU-A7TB-01 11 47800600 47800600 G A NUP160 3'UTR 0.24 TCGA-DU-A7TB-01 11 62744732 62744732 C A SLC22A6 Missense_Mutation p.A497S 0.16 tolerated(0.62) probably_damaging(0.945) TCGA-DU-A7TB-01 12 46231301 46231301 C A ARID2 Missense_Mutation p.L381I 0.14 tolerated(0.1) probably_damaging(0.996) TCGA-DU-A7TB-01 13 32605977 32605977 A G FRY Silent p.K15K 0.38 TCGA-DU-A7TB-01 14 70714217 70714217 C A ADAM21P1 RNA 0.28 TCGA-DU-A7TB-01 14 70924377 70924377 G T ADAM21 Missense_Mutation p.S54I 0.08 deleterious(0.02) benign(0.094) TCGA-DU-A7TB-01 15 40661876 40661876 G A DISP2 Missense_Mutation p.R1188Q 0.31 deleterious(0.03) benign(0.177) TCGA-DU-A7TB-01 15 51689743 51689743 C T GLDN Silent p.S255S 0.28 TCGA-DU-A7TB-01 15 99669671 99669671 A G SYNM Missense_Mutation p.N368S 0.03 tolerated(0.73) benign(0.023) TCGA-DU-A7TB-01 16 19718262 19718262 G A KNOP1 Silent p.N449N 0.33 TCGA-DU-A7TB-01 16 20634716 20634716 C T ACSM1 3'UTR 0.35 TCGA-DU-A7TB-01 16 84050239 84050239 C T SLC38A8 Silent p.P349P 0.35 TCGA-DU-A7TB-01 17 38245687 38245690 TCTT - THRA Intron 0.38 TCGA-DU-A7TB-01 18 30091975 30091975 C T WBP11P1 RNA 0.35 TCGA-DU-A7TB-01 19 54646885 54646885 C T CNOT3 Missense_Mutation p.S19F 0.45 deleterious(0) probably_damaging(0.959) TCGA-DU-A7TB-01 1 202843376 202843376 C T RABIF 3'Flank 0.26 TCGA-DU-A7TB-01 1 35476613 35476613 T C ZMYM6 Missense_Mutation p.T363A 0.37 tolerated(0.19) benign(0.004) TCGA-DU-A7TB-01 1 52902559 52902559 G A ZCCHC11 Nonsense_Mutation p.R1344* 0.38 TCGA-DU-A7TB-01 1 6521665 6521665 G C TNFRSF25 Missense_Mutation p.I370M 0.52 tolerated(0.07) probably_damaging(0.982) TCGA-DU-A7TB-01 21 42613772 42613772 C T BACE2 Silent p.F215F 0.33 TCGA-DU-A7TB-01 22 21330015 21330015 G A AIFM3 Missense_Mutation p.R252K 0.29 deleterious(0) probably_damaging(0.994) TCGA-DU-A7TB-01 22 50962164 50962164 A G SCO2 Missense_Mutation p.I226T 0.33 deleterious(0.01) possibly_damaging(0.907) TCGA-DU-A7TB-01 2 179445326 179445326 C T TTN Silent p.E22260E 0.25 TCGA-DU-A7TB-01 3 122287626 122287626 A G DTX3L Silent p.E230E 0.35 TCGA-DU-A7TB-01 3 15300421 15300421 C T SH3BP5 Missense_Mutation p.R269Q 0.39 deleterious(0.01) probably_damaging(0.965) TCGA-DU-A7TB-01 3 48669775 48669775 G A SLC26A6 Missense_Mutation p.P163L 0.29 deleterious(0) benign(0.232) TCGA-DU-A7TB-01 4 110754331 110754331 G A RRH Missense_Mutation p.G48D 0.08 tolerated(0.2) possibly_damaging(0.701) TCGA-DU-A7TB-01 4 164050411 164050411 G A NAF1 Nonsense_Mutation p.R375* 0.18 TCGA-DU-A7TB-01 4 5696191 5696191 C T EVC2 Missense_Mutation p.M107I 0.27 tolerated(0.3) benign(0) TCGA-DU-A7TB-01 5 41058182 41058182 C A MROH2B Missense_Mutation p.D247Y 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-DU-A7TB-01 5 67591247 67591249 GGT - PIK3R1 Splice_Site p.X583_splice 0.40 TCGA-DU-A7TB-01 6 117700221 117700221 C A ROS1 Splice_Site p.X866_splice 0.07 TCGA-DU-A7TB-01 6 12122606 12122606 C T HIVEP1 Missense_Mutation p.P860S 0.19 deleterious(0.01) possibly_damaging(0.468) TCGA-DU-A7TB-01 6 127471594 127471594 T A RSPO3 Missense_Mutation p.C105S 0.32 deleterious(0) probably_damaging(0.998) TCGA-DU-A7TB-01 6 24651110 24651110 C - TDP2 Frame_Shift_Del p.R332Qfs*8 0.30 TCGA-DU-A7TB-01 6 32020677 32020677 C T TNXB Missense_Mutation p.G2960E 0.04 probably_damaging(0.988) TCGA-DU-A7TB-01 6 49585873 49585873 C T RHAG Missense_Mutation p.G134R 0.36 deleterious(0) probably_damaging(1) TCGA-DU-A7TB-01 7 30113727 30113727 G C PLEKHA8 Missense_Mutation p.W447C 0.29 deleterious(0) probably_damaging(1) TCGA-DU-A7TB-01 7 76916122 76916122 A - CCDC146 Frame_Shift_Del p.Q719Rfs*14 0.27 TCGA-DU-A7TB-01 8 11418859 11418859 G A BLK Missense_Mutation p.D360N 0.33 deleterious(0) probably_damaging(1) TCGA-DU-A7TB-01 9 140099751 140099751 C G TMEM203 Missense_Mutation p.G39A 0.32 tolerated(0.08) benign(0.192) TCGA-DU-A7TC-01 11 101762018 101762020 AAT - ANGPTL5 In_Frame_Del p.Y386del 0.37 TCGA-DU-A7TC-01 11 56043515 56043515 G A OR5T1 Missense_Mutation p.R134H 0.35 deleterious(0.04) benign(0.127) TCGA-DU-A7TC-01 12 108004005 108004005 C T BTBD11 Missense_Mutation p.A561V 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-DU-A7TC-01 12 12291284 12291284 T C LRP6 Silent p.V1194V 0.45 TCGA-DU-A7TC-01 12 53045435 53045435 G A KRT2 Silent p.N164N 0.15 TCGA-DU-A7TC-01 12 6749667 6749667 G A ACRBP Nonsense_Mutation p.R367* 0.34 TCGA-DU-A7TC-01 15 43038236 43038244 AGACGTGCG - TTBK2 In_Frame_Del p.R1162_S1164del 0.12 TCGA-DU-A7TC-01 15 43890406 43890406 C G CKMT1B Missense_Mutation p.Q298E 0.14 deleterious(0.03) benign(0.01) TCGA-DU-A7TC-01 15 43890426 43890426 C G CKMT1B Missense_Mutation p.F304L 0.13 deleterious(0.02) probably_damaging(0.962) TCGA-DU-A7TC-01 17 33586775 33586775 C T SLFN5 Intron 0.14 TCGA-DU-A7TC-01 17 38347699 38347699 G A RAPGEFL1 Silent p.P283P 0.19 TCGA-DU-A7TC-01 17 38721691 38721691 G A CCR7 5'UTR 0.09 TCGA-DU-A7TC-01 17 63533510 63533510 C - AXIN2 Frame_Shift_Del p.E548Dfs*141 0.32 TCGA-DU-A7TC-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.63 deleterious(0) probably_damaging(0.998) TCGA-DU-A7TC-01 19 1053504 1053504 G A ABCA7 Missense_Mutation p.G1133R 0.31 deleterious(0) probably_damaging(0.992) TCGA-DU-A7TC-01 19 51853591 51853591 A - ETFB Frame_Shift_Del p.W235Gfs*10 0.56 TCGA-DU-A7TC-01 19 55047064 55047064 C A KIR3DX1 Silent p.R203R 0.09 TCGA-DU-A7TC-01 19 7682956 7682956 G A CAMSAP3 3'UTR 0.07 TCGA-DU-A7TC-01 1 161569423 161569423 C T FCGR2C Intron 0.65 TCGA-DU-A7TC-01 1 228476440 228476440 G A OBSCN Missense_Mutation p.R3826H 0.31 benign(0.005) TCGA-DU-A7TC-01 22 37603631 37603631 C T SSTR3 Missense_Mutation p.R71Q 0.14 deleterious(0.01) possibly_damaging(0.509) TCGA-DU-A7TC-01 2 122004453 122004453 C T TFCP2L1 Missense_Mutation p.E200K 0.41 tolerated(0.07) probably_damaging(0.995) TCGA-DU-A7TC-01 2 136389573 136389573 T A R3HDM1 Splice_Site p.X233_splice 0.20 TCGA-DU-A7TC-01 2 179426430 179426430 A T TTN Silent p.S28143S 0.29 TCGA-DU-A7TC-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A7TC-01 2 234775676 234775676 C T MSL3P1 RNA 0.42 TCGA-DU-A7TC-01 3 119112379 119112379 A G ARHGAP31 Missense_Mutation p.D316G 0.38 deleterious(0) probably_damaging(0.998) TCGA-DU-A7TC-01 3 196547347 196547347 A G PAK2 Missense_Mutation p.Y420C 0.17 deleterious(0) probably_damaging(1) TCGA-DU-A7TC-01 3 48621040 48621040 A G COL7A1 Silent p.S1450S 0.37 TCGA-DU-A7TC-01 4 55593619 55593619 A G KIT Missense_Mutation p.E562G 0.33 tolerated(0.71) benign(0.01) TCGA-DU-A7TC-01 5 76028379 76028379 C A F2R Missense_Mutation p.T110N 0.03 deleterious(0) possibly_damaging(0.781) TCGA-DU-A7TC-01 6 152621853 152621853 T C SYNE1 Missense_Mutation p.T5869A 0.14 benign(0.338) TCGA-DU-A7TC-01 6 169053869 169053869 G A SMOC2 Missense_Mutation p.A427T 0.10 tolerated(0.91) benign(0.001) TCGA-DU-A7TC-01 6 30624869 30624869 C A DHX16 Missense_Mutation p.V670L 0.06 deleterious(0.01) unknown(0) TCGA-DU-A7TC-01 7 100484040 100484040 C T SRRT Missense_Mutation p.T544M 0.28 deleterious(0.04) benign(0.41) TCGA-DU-A7TC-01 7 98575905 98575905 T A TRRAP Silent p.A2812A 0.19 TCGA-DU-A7TC-01 8 39131835 39131835 A G ADAM32 Missense_Mutation p.S736G 0.35 tolerated(0.39) benign(0.004) TCGA-DU-A7TD-01 10 54527932 54527932 T A MBL2 Missense_Mutation p.T238S 0.63 tolerated(1) benign(0) TCGA-DU-A7TD-01 10 89720875 89720875 G A PTEN Silent p.K342K 0.70 TCGA-DU-A7TD-01 11 1776220 1776220 C A RP11-295K3.1 Missense_Mutation p.G119V 0.42 deleterious_low_confidence(0) unknown(0) TCGA-DU-A7TD-01 11 18765712 18765712 G A PTPN5 Silent p.D44D 0.44 TCGA-DU-A7TD-01 11 62406923 62406923 G A GANAB Missense_Mutation p.R54W 0.05 deleterious(0.02) possibly_damaging(0.663) TCGA-DU-A7TD-01 11 65726678 65726678 C T SART1 5'Flank 0.62 TCGA-DU-A7TD-01 11 94533071 94533071 G A AMOTL1 Missense_Mutation p.A239T 0.26 tolerated(0.2) probably_damaging(0.995) TCGA-DU-A7TD-01 12 109644574 109644574 A G ACACB Silent p.K991K 0.37 TCGA-DU-A7TD-01 12 120152022 120152022 C T CIT Missense_Mutation p.R1429H 0.45 tolerated(0.1) probably_damaging(0.939) TCGA-DU-A7TD-01 12 21331948 21331948 G A SLCO1B1 Missense_Mutation p.D241N 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-DU-A7TD-01 14 101201221 101201221 C T DLK1 Silent p.D380D 0.30 TCGA-DU-A7TD-01 14 106667814 106667814 A T IGHV3-20 Missense_Mutation p.S40T 0.33 tolerated_low_confidence(0.05) benign(0.433) TCGA-DU-A7TD-01 15 43893668 43893668 G T STRC Missense_Mutation p.L1543I 0.38 deleterious(0.01) possibly_damaging(0.487) TCGA-DU-A7TD-01 15 45559948 45559948 G A SLC28A2 Missense_Mutation p.E385K 0.40 deleterious(0.03) possibly_damaging(0.463) TCGA-DU-A7TD-01 16 2030145 2030145 A G NOXO1 Missense_Mutation p.S152P 0.31 tolerated(0.63) benign(0.001) TCGA-DU-A7TD-01 16 22122275 22122275 G A VWA3A Missense_Mutation p.G217R 0.25 tolerated(0.38) benign(0.001) TCGA-DU-A7TD-01 16 81957132 81957132 C T PLCG2 Nonsense_Mutation p.R784* 0.34 TCGA-DU-A7TD-01 16 88889098 88889098 C T GALNS Silent p.G421G 0.07 TCGA-DU-A7TD-01 17 39334112 39334112 C T KRTAP4-2 Missense_Mutation p.R102H 0.43 tolerated(0.09) unknown(0) TCGA-DU-A7TD-01 18 19112440 19112440 C T ESCO1 Missense_Mutation p.C790Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-DU-A7TD-01 18 2923857 2923857 G A LPIN2 Missense_Mutation p.S697L 0.45 deleterious(0) probably_damaging(1) TCGA-DU-A7TD-01 19 1012507 1012507 C T TMEM259 Missense_Mutation p.A225T 0.53 tolerated(0.22) benign(0.14) TCGA-DU-A7TD-01 19 55508845 55508845 C T NLRP2 Missense_Mutation p.R1014W 0.38 tolerated(0.07) benign(0.005) TCGA-DU-A7TD-01 19 58549411 58549411 C G ZSCAN1 Silent p.P69P 0.29 TCGA-DU-A7TD-01 19 621242 621242 T A POLRMT Missense_Mutation p.D819V 0.40 deleterious(0) probably_damaging(1) TCGA-DU-A7TD-01 19 6665007 6665007 C T TNFSF14 Missense_Mutation p.R218H 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-DU-A7TD-01 19 8976426 8976426 C A MUC16 Missense_Mutation p.E14134D 0.09 probably_damaging(0.98) TCGA-DU-A7TD-01 1 101343089 101343089 G T EXTL2 Missense_Mutation p.Q126K 0.53 tolerated(0.33) probably_damaging(0.915) TCGA-DU-A7TD-01 1 10436617 10436617 G A KIF1B Missense_Mutation p.R1762H 0.36 deleterious(0.01) possibly_damaging(0.503) TCGA-DU-A7TD-01 1 158324331 158324331 C T CD1E Missense_Mutation p.R75C 0.32 tolerated(0.07) possibly_damaging(0.744) TCGA-DU-A7TD-01 1 248005188 248005188 T C OR11L1 Missense_Mutation p.Q4R 0.31 tolerated(0.56) benign(0.001) TCGA-DU-A7TD-01 1 26888117 26888117 C - RPS6KA1 Frame_Shift_Del p.I528Lfs*18 0.28 TCGA-DU-A7TD-01 20 31606096 31606096 C T BPIFB2 Silent p.I203I 0.16 TCGA-DU-A7TD-01 22 32587158 32587158 G A RFPL2 Silent p.D246D 0.38 TCGA-DU-A7TD-01 22 32614591 32614591 C T SLC5A4 Silent p.T630T 0.40 TCGA-DU-A7TD-01 22 37603624 37603624 C T SSTR3 Silent p.T73T 0.50 TCGA-DU-A7TD-01 2 103040545 103040545 C T IL18RAP Silent p.T115T 0.38 TCGA-DU-A7TD-01 2 217724630 217724630 C T TNP1 Missense_Mutation p.R43Q 0.34 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-DU-A7TD-01 2 234652548 234652548 G A UGT1A10 Intron 0.22 TCGA-DU-A7TD-01 2 240985194 240985194 G A OR6B3 Missense_Mutation p.T99M 0.40 deleterious(0.01) benign(0.189) TCGA-DU-A7TD-01 2 241992689 241992689 C T SNED1 Missense_Mutation p.R735C 0.39 tolerated(0.06) possibly_damaging(0.462) TCGA-DU-A7TD-01 2 64193065 64193065 G T VPS54 Silent p.S176S 0.57 TCGA-DU-A7TD-01 3 151599429 151599429 T C SUCNR1 3'UTR 0.25 TCGA-DU-A7TD-01 3 43759313 43759313 C T ABHD5 Silent p.I308I 0.09 TCGA-DU-A7TD-01 5 137781255 137781255 G A REEP2 Missense_Mutation p.A220T 0.06 tolerated(0.69) benign(0) TCGA-DU-A7TD-01 5 140797577 140797577 G A PCDHGB7 Missense_Mutation p.A51T 0.34 deleterious(0.01) probably_damaging(0.943) TCGA-DU-A7TD-01 6 142519682 142519682 T C VTA1 Silent p.Y209Y 0.38 TCGA-DU-A7TD-01 6 7373751 7373751 G A CAGE1 Missense_Mutation p.S434F 0.26 tolerated(0.34) probably_damaging(0.983) TCGA-DU-A7TD-01 7 150171183 150171183 C T GIMAP8 Missense_Mutation p.R256C 0.22 tolerated(0.05) probably_damaging(0.986) TCGA-DU-A7TD-01 7 31146176 31146176 A C ADCYAP1R1 Missense_Mutation p.K457Q 0.20 deleterious(0) probably_damaging(0.942) TCGA-DU-A7TD-01 7 55221783 55221783 A T EGFR Missense_Mutation p.Q276L 0.97 deleterious(0.01) possibly_damaging(0.741) TCGA-DU-A7TD-01 7 82532025 82532025 G A PCLO Silent p.Y4490Y 0.24 TCGA-DU-A7TD-01 7 92151417 92151417 T C PEX1 Missense_Mutation p.Q91R 0.18 deleterious(0) probably_damaging(0.993) TCGA-DU-A7TD-01 8 80677812 80677812 C T HEY1 Missense_Mutation p.G180R 0.33 tolerated(0.31) possibly_damaging(0.705) TCGA-DU-A7TG-01 11 6519690 6519690 G A DNHD1 Missense_Mutation p.R82H 0.14 benign(0.002) TCGA-DU-A7TG-01 14 23897871 23897871 G A MYH7 Silent p.S472S 0.06 TCGA-DU-A7TG-01 15 56924126 56924126 T C ZNF280D Missense_Mutation p.E837G 0.19 tolerated(0.28) benign(0.002) TCGA-DU-A7TG-01 19 14730219 14730219 T C EMR3 3'UTR 0.14 TCGA-DU-A7TG-01 1 205585723 205585723 T C ELK4 Missense_Mutation p.D416G 0.09 deleterious(0) probably_damaging(0.995) TCGA-DU-A7TG-01 21 47417371 47417371 G A COL6A1 Missense_Mutation p.G479S 0.16 deleterious(0.04) probably_damaging(1) TCGA-DU-A7TG-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-DU-A7TG-01 6 170070679 170070679 T A WDR27 Missense_Mutation p.M148L 0.19 tolerated(0.22) benign(0.002) TCGA-DU-A7TG-01 6 47682296 47682296 C T GPR115 Missense_Mutation p.R439C 0.21 deleterious(0) probably_damaging(0.985) TCGA-DU-A7TG-01 6 55659164 55659164 C - BMP5 Frame_Shift_Del p.V249Sfs*6 0.11 TCGA-DU-A7TG-01 7 151864270 151864270 A G KMT2C Silent p.V3237V 0.15 TCGA-DU-A7TG-01 8 95178176 95178176 A G CDH17 Silent p.H365H 0.15 TCGA-DU-A7TG-01 9 32632685 32632685 A G TAF1L Missense_Mutation p.C965R 0.19 deleterious(0) probably_damaging(0.997) TCGA-DU-A7TJ-01 10 81317230 81317230 C T SFTPA2 Missense_Mutation p.R161H 0.35 tolerated(0.35) benign(0.003) TCGA-DU-A7TJ-01 11 123901065 123901065 G A OR10G8 Missense_Mutation p.V246M 0.46 deleterious(0.02) benign(0.265) TCGA-DU-A7TJ-01 11 56510346 56510346 C A OR9G4 Missense_Mutation p.E314D 0.41 tolerated(0.57) benign(0.004) TCGA-DU-A7TJ-01 11 62414422 62414422 C A INTS5 3'UTR 0.12 TCGA-DU-A7TJ-01 12 10562063 10562063 T C KLRC4 Missense_Mutation p.I38V 0.44 deleterious(0.01) possibly_damaging(0.868) TCGA-DU-A7TJ-01 12 22778194 22778194 A G ETNK1 Missense_Mutation p.N33D 0.29 tolerated_low_confidence(1) benign(0) TCGA-DU-A7TJ-01 13 108922745 108922745 C T TNFSF13B Missense_Mutation p.R133C 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-DU-A7TJ-01 13 29600875 29600875 C T MTUS2 Silent p.H690H 0.41 TCGA-DU-A7TJ-01 14 20502653 20502653 G A OR4K13 Missense_Mutation p.R89C 0.44 tolerated(0.08) benign(0.001) TCGA-DU-A7TJ-01 14 42373532 42373532 C T LRFN5 3'UTR 0.35 TCGA-DU-A7TJ-01 16 1715128 1715128 C G CRAMP1L Missense_Mutation p.S914C 0.33 deleterious(0) probably_damaging(0.999) TCGA-DU-A7TJ-01 16 84812711 84812711 G A USP10 3'UTR 0.51 TCGA-DU-A7TJ-01 17 43475375 43475375 G A ARHGAP27 Silent p.H253H 0.44 TCGA-DU-A7TJ-01 17 47120867 47120867 G A IGF2BP1 Silent p.P385P 0.44 TCGA-DU-A7TJ-01 17 76803536 76803536 G A USP36 Silent p.D530D 0.45 TCGA-DU-A7TJ-01 18 2951271 2951271 T C LPIN2 Silent p.K124K 0.47 TCGA-DU-A7TJ-01 19 40023046 40023046 C G EID2B Missense_Mutation p.D133H 0.26 deleterious(0) probably_damaging(0.984) TCGA-DU-A7TJ-01 19 50473580 50473580 C T SIGLEC16 Intron 0.19 TCGA-DU-A7TJ-01 19 58846117 58846117 G T ZSCAN22 Splice_Site 0.29 TCGA-DU-A7TJ-01 1 111861169 111861169 G A CHIA Missense_Mutation p.V262I 0.44 tolerated(0.12) benign(0.263) TCGA-DU-A7TJ-01 1 113269393 113269393 C T FAM19A3 3'UTR 0.27 TCGA-DU-A7TJ-01 1 117487662 117487662 G A PTGFRN Silent p.Q260Q 0.46 TCGA-DU-A7TJ-01 1 152487972 152487972 C G CRCT1 Missense_Mutation p.S38C 0.10 unknown(0) TCGA-DU-A7TJ-01 1 200882810 200882810 C A C1orf106 3'UTR 0.44 TCGA-DU-A7TJ-01 1 228602614 228602614 G A TRIM17 Missense_Mutation p.R54W 0.41 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-DU-A7TJ-01 1 93300378 93300378 G C RPL5 Missense_Mutation p.A78P 0.40 deleterious(0) probably_damaging(0.995) TCGA-DU-A7TJ-01 20 32308005 32308005 G C PXMP4 Silent p.A3A 0.34 TCGA-DU-A7TJ-01 20 3760357 3760357 C T SPEF1 Missense_Mutation p.A59T 0.35 deleterious(0.03) probably_damaging(0.988) TCGA-DU-A7TJ-01 21 45732145 45732145 G A PFKL Nonsense_Mutation p.W132* 0.26 TCGA-DU-A7TJ-01 22 22024879 22024879 G A PPIL2 Missense_Mutation p.R36H 0.40 deleterious(0) benign(0.105) TCGA-DU-A7TJ-01 22 23047120 23047120 G T IGLV3-22 Missense_Mutation p.W53L 0.40 deleterious(0) probably_damaging(0.998) TCGA-DU-A7TJ-01 2 128341727 128341727 C T MYO7B Silent p.N458N 0.38 TCGA-DU-A7TJ-01 2 136622582 136622582 C G MCM6 Splice_Site p.X360_splice 0.36 TCGA-DU-A7TJ-01 2 179453326 179453326 A G TTN Silent p.N21042N 0.05 TCGA-DU-A7TJ-01 2 198368049 198368049 C T HSPE1 3'UTR 0.30 TCGA-DU-A7TJ-01 2 233409542 233409542 C A CHRNG Missense_Mutation p.A437D 0.48 tolerated(0.1) benign(0.021) TCGA-DU-A7TJ-01 2 89266236 89266236 G T IGKV1-6 Missense_Mutation p.Q8K 0.28 deleterious(0.01) benign(0.109) TCGA-DU-A7TJ-01 2 95539225 95539225 C A TEKT4 Intron 0.41 TCGA-DU-A7TJ-01 3 190167658 190167658 T G TMEM207 5'UTR 0.37 TCGA-DU-A7TJ-01 4 100257916 100257916 G A ADH1C Missense_Mutation p.T374M 0.54 benign(0.01) TCGA-DU-A7TJ-01 4 46967202 46967202 G A GABRA4 Nonsense_Mutation p.R307* 0.36 TCGA-DU-A7TJ-01 5 155756557 155756557 G A SGCD 5'UTR 0.46 TCGA-DU-A7TJ-01 5 41004898 41004898 G C MROH2B Missense_Mutation p.T1330R 0.41 deleterious(0.03) benign(0.189) TCGA-DU-A7TJ-01 5 56777838 56777838 C T ACTBL2 Missense_Mutation p.A233T 0.34 tolerated_low_confidence(0.34) possibly_damaging(0.798) TCGA-DU-A7TJ-01 5 67591150 67591151 GA - PIK3R1 Frame_Shift_Del p.L581Ffs*20 0.21 TCGA-DU-A7TJ-01 6 30136149 30136149 C T TRIM15 Nonsense_Mutation p.R184* 0.40 TCGA-DU-A7TJ-01 7 107427813 107427813 C T SLC26A3 Missense_Mutation p.E293K 0.32 deleterious(0) probably_damaging(1) TCGA-DU-A7TJ-01 7 98453658 98453658 C T TMEM130 Missense_Mutation p.A234T 0.23 tolerated(0.83) benign(0.019) TCGA-DU-A7TJ-01 8 14095110 14095110 G T SGCZ Missense_Mutation p.L139M 0.74 tolerated(0.08) benign(0.328) TCGA-DU-A7TJ-01 9 125289050 125289050 A G OR1N1 Missense_Mutation p.F175L 0.51 deleterious(0) probably_damaging(0.996) TCGA-DU-A7TJ-01 9 125551964 125551964 C T OR5C1 Silent p.A251A 0.40 TCGA-DU-A7TJ-01 9 140964211 140964211 A T CACNA1B Missense_Mutation p.E1557V 0.36 tolerated(0.24) benign(0.007) TCGA-DU-A7TJ-01 9 78943064 78943064 C T PCSK5 Silent p.P1466P 0.44 TCGA-DU-A7TJ-01 9 97844955 97844955 G A C9orf3 Missense_Mutation p.M806I 0.42 tolerated(0.08) probably_damaging(0.934) TCGA-DU-A7TJ-01 X 27839467 27839467 G A MAGEB10 Missense_Mutation p.R15H 0.83 tolerated(0.1) possibly_damaging(0.701) TCGA-E1-5302-01 10 103871263 103871263 G A LDB1 Missense_Mutation p.S19L 0.40 deleterious_low_confidence(0.01) benign(0) TCGA-E1-5302-01 11 111167023 111167023 C T COLCA1 Missense_Mutation p.G61R 0.05 probably_damaging(0.979) TCGA-E1-5302-01 11 113628513 113628513 T C ZW10 Missense_Mutation p.I266V 0.10 tolerated(1) benign(0.002) TCGA-E1-5302-01 11 59812148 59812148 T C OOSP2 Missense_Mutation p.V83A 0.16 deleterious(0) benign(0.116) TCGA-E1-5302-01 11 60687346 60687346 G C TMEM109 Missense_Mutation p.V61L 0.05 tolerated(0.47) benign(0.002) TCGA-E1-5302-01 11 62361480 62361480 A C MTA2 Missense_Mutation p.M625R 0.05 tolerated_low_confidence(0.07) possibly_damaging(0.879) TCGA-E1-5302-01 11 62400156 62400156 T G GANAB Missense_Mutation p.M315L 0.04 tolerated(0.1) probably_damaging(0.94) TCGA-E1-5302-01 11 66359044 66359044 C T CCDC87 Missense_Mutation p.M481I 0.04 deleterious(0.01) benign(0.444) TCGA-E1-5302-01 12 104049284 104049284 C T STAB2 Silent p.Y553Y 0.52 TCGA-E1-5302-01 12 104374683 104374683 C T TDG Missense_Mutation p.P141S 0.10 deleterious(0) probably_damaging(1) TCGA-E1-5302-01 15 27128668 27128668 G A GABRA5 Missense_Mutation p.R154Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-E1-5302-01 16 26147367 26147367 A T HS3ST4 Missense_Mutation p.K390I 0.20 deleterious(0.01) possibly_damaging(0.853) TCGA-E1-5302-01 16 28507468 28507468 G A APOBR Missense_Mutation p.G369E 0.52 tolerated(0.48) benign(0.001) TCGA-E1-5302-01 17 72851092 72851092 C A GRIN2C Missense_Mutation p.R47L 0.07 deleterious(0.01) benign(0.233) TCGA-E1-5302-01 17 7577101 7577101 C - TP53 Frame_Shift_Del p.R280Efs*65 0.52 TCGA-E1-5302-01 18 64172539 64172539 C T CDH19 Missense_Mutation p.G610E 0.06 deleterious(0.03) possibly_damaging(0.891) TCGA-E1-5302-01 19 38818101 38818101 G A KCNK6 3'UTR 0.12 TCGA-E1-5302-01 19 40883897 40883897 C G PLD3 Silent p.T430T 0.14 TCGA-E1-5302-01 19 6697496 6697496 G A C3 Silent p.T885T 0.07 TCGA-E1-5302-01 1 155257756 155257756 G A HCN3 Silent p.A609A 0.07 TCGA-E1-5302-01 1 1563188 1563188 C T MIB2 Silent p.R668R 0.38 TCGA-E1-5302-01 1 247920937 247920937 C T OR1C1 Missense_Mutation p.V258I 0.55 deleterious(0.04) benign(0.156) TCGA-E1-5302-01 22 38323471 38323471 C T MICALL1 Missense_Mutation p.P507S 0.49 deleterious(0.04) probably_damaging(0.999) TCGA-E1-5302-01 22 46929761 46929761 C T CELSR1 Missense_Mutation p.D1103N 0.09 tolerated(0.82) benign(0.142) TCGA-E1-5302-01 2 132276253 132276253 C T AC093838.4 RNA 0.24 TCGA-E1-5302-01 2 183095781 183095781 A C PDE1A Nonsense_Mutation p.Y181* 0.13 TCGA-E1-5302-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-5302-01 2 29356592 29356592 C T CLIP4 Missense_Mutation p.R147C 0.06 deleterious(0.02) probably_damaging(0.988) TCGA-E1-5302-01 2 30863465 30863465 A G LCLAT1 Missense_Mutation p.N409D 0.11 tolerated_low_confidence(0.5) benign(0.001) TCGA-E1-5302-01 2 30966407 30966407 C T CAPN13 Silent p.S429S 0.42 TCGA-E1-5302-01 3 126916311 126916311 C A C3orf56 3'UTR 0.20 TCGA-E1-5302-01 3 47361235 47361235 C T KLHL18 Silent p.C74C 0.05 TCGA-E1-5302-01 3 7188209 7188209 G A GRM7 Missense_Mutation p.R197H 0.16 deleterious(0) probably_damaging(0.998) TCGA-E1-5302-01 5 108523320 108523320 A T FER 3'UTR 0.35 TCGA-E1-5302-01 6 119245149 119245149 A G MCM9 Missense_Mutation p.C150R 0.07 deleterious(0) probably_damaging(1) TCGA-E1-5302-01 6 150285156 150285156 G A ULBP1 5'UTR 0.05 TCGA-E1-5302-01 6 46826878 46826878 C T GPR116 Missense_Mutation p.S921N 0.18 deleterious(0.05) possibly_damaging(0.889) TCGA-E1-5302-01 7 122338205 122338205 G A RNF133 Silent p.C256C 0.26 TCGA-E1-5302-01 7 130038826 130038826 C T CEP41 Missense_Mutation p.R343Q 0.09 deleterious(0.03) possibly_damaging(0.595) TCGA-E1-5302-01 7 29963705 29963705 G A SCRN1 Silent p.T391T 0.10 TCGA-E1-5302-01 8 26722556 26722556 C T ADRA1A 5'UTR 0.08 TCGA-E1-5302-01 9 139912486 139912486 C T ABCA2 Missense_Mutation p.D679N 0.20 deleterious(0.04) probably_damaging(0.963) TCGA-E1-5302-01 9 140110623 140110623 A G NDOR1 Silent p.A553A 0.11 TCGA-E1-5302-01 9 18928507 18928507 C T FAM154A Missense_Mutation p.R323Q 0.06 tolerated(0.12) possibly_damaging(0.658) TCGA-E1-5302-01 9 90501762 90501762 G A SPATA31E1 Missense_Mutation p.R787H 0.12 tolerated(0.11) benign(0.005) TCGA-E1-5302-01 X 76907649 76907650 TC - ATRX Frame_Shift_Del p.R1504Qfs*5 0.48 TCGA-E1-5303-01 11 101818852 101818852 G A KIAA1377 Missense_Mutation p.R162H 0.38 tolerated(1) benign(0) TCGA-E1-5303-01 11 55860898 55860898 G C OR8I2 Missense_Mutation p.V39L 0.33 tolerated(0.34) benign(0.025) TCGA-E1-5303-01 11 62389342 62389342 C A B3GAT3 Missense_Mutation p.Q26H 0.12 deleterious(0.05) benign(0.319) TCGA-E1-5303-01 12 116460278 116460278 G A MED13L Missense_Mutation p.S203L 0.28 deleterious(0) unknown(0) TCGA-E1-5303-01 12 46242662 46242662 C T ARID2 Nonsense_Mutation p.R542* 0.32 TCGA-E1-5303-01 12 50344548 50344548 C T AQP2 5'UTR 0.32 TCGA-E1-5303-01 13 39585513 39585514 - T PROSER1 Frame_Shift_Ins p.G942Rfs*48 0.09 TCGA-E1-5303-01 14 20710969 20710969 G C OR11H4 Missense_Mutation p.D7H 0.05 tolerated_low_confidence(0.09) benign(0.001) TCGA-E1-5303-01 17 36714502 36714502 C T SRCIN1 Missense_Mutation p.R721H 0.44 tolerated(0.06) benign(0.01) TCGA-E1-5303-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.75 deleterious(0.04) possibly_damaging(0.83) TCGA-E1-5303-01 17 80407088 80407088 G C C17orf62 Missense_Mutation p.L15V 0.80 deleterious(0) probably_damaging(0.998) TCGA-E1-5303-01 18 2913269 2913269 T C EMILIN2 Missense_Mutation p.L1010P 0.34 deleterious(0) probably_damaging(1) TCGA-E1-5303-01 19 3532532 3532532 G C FZR1 Missense_Mutation p.G376R 0.11 deleterious(0) probably_damaging(1) TCGA-E1-5303-01 19 47585508 47585549 CTTCTTTGGGAGTTCGATGTCATGGCTAAAATTACAGTGGTC - ZC3H4 In_Frame_Del p.D408_K421del 0.30 TCGA-E1-5303-01 19 58966477 58966477 C A ZNF324B Intron 0.35 TCGA-E1-5303-01 1 158323763 158323763 C G CD1E 5'UTR 0.05 TCGA-E1-5303-01 1 161496481 161496481 C G HSPA6 3'UTR 0.50 TCGA-E1-5303-01 1 186948459 186948459 A G PLA2G4A Missense_Mutation p.E658G 0.05 deleterious(0.05) benign(0.073) TCGA-E1-5303-01 20 40045243 40045243 C T CHD6 Silent p.A2157A 0.33 TCGA-E1-5303-01 2 179456089 179456089 G A TTN Silent p.T20121T 0.34 TCGA-E1-5303-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-5303-01 2 220034279 220034279 C T SLC23A3 Missense_Mutation p.G95D 0.28 deleterious(0) probably_damaging(1) TCGA-E1-5303-01 3 101177814 101177814 T G SENP7 Missense_Mutation p.K90T 0.17 tolerated(0.08) possibly_damaging(0.776) TCGA-E1-5303-01 3 178748788 178748788 C G ZMAT3 Splice_Site p.X91_splice 0.37 TCGA-E1-5303-01 3 55052339 55052339 C T CACNA2D3 Silent p.C994C 0.32 TCGA-E1-5303-01 4 74303981 74303981 A C AFP Missense_Mutation p.K76N 0.16 deleterious(0) probably_damaging(0.932) TCGA-E1-5303-01 5 180687093 180687093 T C TRIM52 Missense_Mutation p.D241G 0.39 deleterious(0) probably_damaging(1) TCGA-E1-5303-01 5 79616896 79616896 G A SPZ1 Missense_Mutation p.G288S 0.36 tolerated(0.52) benign(0.001) TCGA-E1-5303-01 5 89914934 89914934 C A GPR98 Missense_Mutation p.P130Q 0.13 probably_damaging(0.937) TCGA-E1-5303-01 6 144872125 144872125 C T UTRN Missense_Mutation p.R2279C 0.29 deleterious(0) probably_damaging(1) TCGA-E1-5303-01 7 107002756 107002756 T C COG5 Silent p.G346G 0.12 TCGA-E1-5303-01 7 141301025 141301025 A C AGK Missense_Mutation p.E81A 0.14 deleterious(0) possibly_damaging(0.794) TCGA-E1-5303-01 7 813720 813720 A G HEATR2 Missense_Mutation p.D656G 0.26 deleterious(0.01) probably_damaging(0.937) TCGA-E1-5303-01 8 110984685 110984685 G A KCNV1 Missense_Mutation p.R265W 0.06 deleterious(0.02) benign(0.013) TCGA-E1-5303-01 9 131586077 131586077 G C C9orf114 Missense_Mutation p.D337E 0.29 deleterious(0.02) possibly_damaging(0.513) TCGA-E1-5303-01 X 24229263 24229263 C T ZFX Nonsense_Mutation p.Q730* 0.05 TCGA-E1-5303-01 X 76939929 76939930 - A ATRX Frame_Shift_Ins p.L273Ffs*9 0.47 TCGA-E1-5304-01 10 50901834 50901834 G T C10orf53 Missense_Mutation p.D38Y 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-E1-5304-01 10 95557106 95557106 G A LGI1 Missense_Mutation p.R407H 0.58 deleterious(0.05) benign(0.117) TCGA-E1-5304-01 11 31815341 31815341 A G PAX6 Missense_Mutation p.S273P 0.93 deleterious(0) probably_damaging(0.999) TCGA-E1-5304-01 11 62287998 62287998 C A AHNAK Missense_Mutation p.D4631Y 0.23 possibly_damaging(0.782) TCGA-E1-5304-01 12 120935907 120935908 - TT DYNLL1 Frame_Shift_Ins p.C56Ffs*12 0.31 TCGA-E1-5304-01 12 56233333 56233333 C T MMP19 Missense_Mutation p.R238Q 0.21 tolerated(0.2) benign(0.093) TCGA-E1-5304-01 14 58471319 58471319 C G C14orf37 3'UTR 0.10 TCGA-E1-5304-01 15 40258023 40258023 G A EIF2AK4 Silent p.K332K 0.24 TCGA-E1-5304-01 16 83994303 83994303 C T OSGIN1 Missense_Mutation p.R112W 0.17 deleterious(0) possibly_damaging(0.606) TCGA-E1-5304-01 17 7578550 7578550 G T TP53 Missense_Mutation p.S127Y 1.00 deleterious(0) probably_damaging(1) TCGA-E1-5304-01 19 36501795 36501795 C T ALKBH6 Splice_Site p.X140_splice 0.27 TCGA-E1-5304-01 1 229685030 229685030 C G ABCB10 Silent p.L223L 0.21 TCGA-E1-5304-01 1 26898350 26898350 G T RPS6KA1 Missense_Mutation p.R597L 0.44 deleterious(0.01) benign(0.028) TCGA-E1-5304-01 1 89486247 89486247 T C GBP3 Missense_Mutation p.Y53C 0.15 deleterious(0) probably_damaging(1) TCGA-E1-5304-01 2 10188340 10188340 G T KLF11 Silent p.V292V 0.04 TCGA-E1-5304-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-5304-01 2 233633140 233633140 A G KCNJ13 Missense_Mutation p.C282R 0.53 deleterious(0) probably_damaging(0.966) TCGA-E1-5304-01 2 67631847 67631847 A G ETAA1 Missense_Mutation p.N678S 0.44 tolerated(0.2) benign(0.144) TCGA-E1-5304-01 2 73718168 73718168 T G ALMS1 Missense_Mutation p.C3027G 0.25 benign(0.158) TCGA-E1-5304-01 2 73868641 73868641 G C NAT8 Missense_Mutation p.L39V 0.22 deleterious(0.03) possibly_damaging(0.607) TCGA-E1-5304-01 2 97875420 97875420 T G ANKRD36 Missense_Mutation p.S1090A 0.12 deleterious_low_confidence(0) benign(0.097) TCGA-E1-5304-01 3 113761686 113761686 C T KIAA1407 Silent p.E93E 0.26 TCGA-E1-5304-01 3 46014621 46014621 C T FYCO1 Silent p.S166S 0.25 TCGA-E1-5304-01 3 89448615 89448615 G T EPHA3 Nonsense_Mutation p.E527* 0.23 TCGA-E1-5304-01 4 109765700 109765700 C T COL25A1 Missense_Mutation p.G535D 0.33 deleterious(0) probably_damaging(1) TCGA-E1-5304-01 4 47938995 47938995 T A CNGA1 Missense_Mutation p.I575F 0.06 deleterious(0) probably_damaging(0.984) TCGA-E1-5304-01 6 136932510 136932510 T C MAP3K5 Missense_Mutation p.I811V 0.05 tolerated(0.76) probably_damaging(0.979) TCGA-E1-5304-01 6 51513908 51513908 G T PKHD1 Missense_Mutation p.P3762Q 0.33 deleterious(0) probably_damaging(1) TCGA-E1-5304-01 6 64356551 64356551 A G PHF3 Missense_Mutation p.E32G 0.26 deleterious(0) probably_damaging(0.971) TCGA-E1-5304-01 7 105189063 105189063 C A RINT1 Missense_Mutation p.S301Y 0.22 deleterious(0) benign(0.281) TCGA-E1-5304-01 8 113988170 113988170 T C CSMD3 Missense_Mutation p.D413G 0.21 tolerated(0.43) benign(0) TCGA-E1-5304-01 8 145007212 145007212 C T PLEC Missense_Mutation p.V633M 0.62 unknown(0) TCGA-E1-5304-01 8 99779474 99779474 T C STK3 Missense_Mutation p.D106G 0.48 deleterious(0.01) possibly_damaging(0.741) TCGA-E1-5304-01 9 117139492 117139492 T C AKNA Missense_Mutation p.R199G 0.58 deleterious(0.02) benign(0.037) TCGA-E1-5304-01 9 78965754 78965754 G A PCSK5 Silent p.A1632A 0.50 TCGA-E1-5304-01 9 85677477 85677477 G A RASEF Silent p.S102S 0.27 TCGA-E1-5304-01 X 76814313 76814313 G A ATRX Nonsense_Mutation p.R2111* 0.99 TCGA-E1-5305-01 10 75834513 75834513 T G VCL Missense_Mutation p.F212C 0.06 deleterious(0) probably_damaging(0.989) TCGA-E1-5305-01 10 7786812 7786812 T C ITIH2 Missense_Mutation p.S823P 0.31 deleterious(0.01) possibly_damaging(0.794) TCGA-E1-5305-01 11 88042410 88042410 T C CTSC Missense_Mutation p.T188A 0.42 tolerated(0.18) benign(0.009) TCGA-E1-5305-01 12 1992145 1992145 G A CACNA2D4 Missense_Mutation p.T458M 0.35 deleterious(0) probably_damaging(0.985) TCGA-E1-5305-01 12 32480873 32480873 A G BICD1 Missense_Mutation p.N495S 0.32 tolerated(0.9) benign(0.002) TCGA-E1-5305-01 12 6729924 6729924 C T LPAR5 Missense_Mutation p.R164H 0.27 tolerated(0.17) benign(0.003) TCGA-E1-5305-01 13 46092961 46092961 T C COG3 Silent p.N665N 0.24 TCGA-E1-5305-01 14 21679388 21679414 GTCATCCTCGCCATTGGCGCTGTCTCT - HNRNPC In_Frame_Del p.R297_D305del 0.25 TCGA-E1-5305-01 15 22332530 22332530 G T RP11-69H14.6 RNA 0.20 TCGA-E1-5305-01 15 51791722 51791724 AAG - DMXL2 In_Frame_Del p.L1233del 0.11 TCGA-E1-5305-01 17 7577129 7577129 A G TP53 Missense_Mutation p.F270S 0.76 deleterious(0) probably_damaging(0.999) TCGA-E1-5305-01 17 77079175 77079177 AGA - ENGASE In_Frame_Del p.K373del 0.09 TCGA-E1-5305-01 19 537058 537060 CTT - CDC34 In_Frame_Del p.F137del 0.39 TCGA-E1-5305-01 1 109380254 109380254 T C AKNAD1 Missense_Mutation p.Y485C 0.11 tolerated(0.25) benign(0.006) TCGA-E1-5305-01 1 155005617 155005617 A C DCST2 Missense_Mutation p.L131R 0.36 deleterious(0.02) benign(0.345) TCGA-E1-5305-01 1 159284385 159284385 C T OR10J3 Missense_Mutation p.R22Q 0.39 tolerated(0.58) benign(0.005) TCGA-E1-5305-01 1 23665036 23665038 CTT - HNRNPR In_Frame_Del p.E74del 0.13 TCGA-E1-5305-01 1 45794944 45794944 C T MUTYH 3'UTR 0.43 TCGA-E1-5305-01 1 74801804 74801804 T C FPGT-TNNI3K Missense_Mutation p.L332P 0.32 deleterious(0) probably_damaging(0.999) TCGA-E1-5305-01 20 36983811 36983811 T A LBP Splice_Site p.X196_splice 0.16 TCGA-E1-5305-01 22 22890401 22890402 TG - PRAME 3'UTR 0.10 TCGA-E1-5305-01 22 50878211 50878212 GT - PPP6R2 Frame_Shift_Del p.W713Gfs*17 0.23 TCGA-E1-5305-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-5305-01 3 27444777 27444777 A G SLC4A7 Missense_Mutation p.V716A 0.46 deleterious(0) probably_damaging(0.998) TCGA-E1-5305-01 3 47284702 47284702 A G KIF9 Silent p.P516P 0.06 TCGA-E1-5305-01 3 52416412 52416412 G A DNAH1 Missense_Mutation p.V2628I 0.41 benign(0.012) TCGA-E1-5305-01 3 67054104 67054104 A G KBTBD8 Missense_Mutation p.K238R 0.31 tolerated(0.32) benign(0.034) TCGA-E1-5305-01 4 4228377 4228377 G A OTOP1 Missense_Mutation p.A72V 0.12 tolerated(1) benign(0.12) TCGA-E1-5305-01 5 13751313 13751313 G T DNAH5 Silent p.T3695T 0.06 TCGA-E1-5305-01 5 41012689 41012689 T C MROH2B Missense_Mutation p.D1044G 0.39 deleterious(0.02) benign(0.015) TCGA-E1-5305-01 5 7520914 7520914 G A ADCY2 Missense_Mutation p.A158T 0.46 deleterious(0) possibly_damaging(0.638) TCGA-E1-5305-01 6 36569524 36569524 T C SRSF3 Silent p.S140S 0.03 TCGA-E1-5305-01 8 66701234 66701236 CTT - PDE7A Intron 0.45 TCGA-E1-5305-01 8 73849587 73849587 C T KCNB2 Missense_Mutation p.T666M 0.40 tolerated_low_confidence(0.27) benign(0.254) TCGA-E1-5305-01 9 38396046 38396046 C T ALDH1B1 Missense_Mutation p.R101W 0.35 deleterious(0.01) probably_damaging(0.953) TCGA-E1-5305-01 X 76778848 76778849 - GTATC ATRX Frame_Shift_Ins p.H2244Rfs*8 0.62 TCGA-E1-5307-01 10 103281443 103281443 G A BTRC Silent p.R124R 0.07 TCGA-E1-5307-01 10 72358728 72358728 G A PRF1 Missense_Mutation p.T250M 0.48 deleterious(0) probably_damaging(0.986) TCGA-E1-5307-01 10 94266256 94266256 C T IDE Silent p.R423R 0.04 TCGA-E1-5307-01 10 95066658 95066658 G A MYOF 3'UTR 0.12 TCGA-E1-5307-01 11 117266823 117266823 T C CEP164 Missense_Mutation p.V1048A 0.22 tolerated(0.97) benign(0.006) TCGA-E1-5307-01 11 60476228 60476228 G A MS4A8 Missense_Mutation p.D170N 0.16 tolerated(0.5) benign(0.001) TCGA-E1-5307-01 11 72945337 72945337 G A P2RY2 Missense_Mutation p.V45M 0.10 deleterious(0.03) possibly_damaging(0.747) TCGA-E1-5307-01 12 26752943 26752943 G C ITPR2 Missense_Mutation p.L1260V 0.20 tolerated(0.16) possibly_damaging(0.458) TCGA-E1-5307-01 13 29600162 29600162 A G MTUS2 Missense_Mutation p.N453D 0.25 tolerated(0.81) benign(0) TCGA-E1-5307-01 14 56117347 56117347 G A KTN1 Missense_Mutation p.A853T 0.05 tolerated(0.16) benign(0.089) TCGA-E1-5307-01 15 57543547 57543547 G A TCF12 Splice_Site p.X372_splice 0.41 TCGA-E1-5307-01 15 59186365 59186365 T C SLTM Missense_Mutation p.M469V 0.09 tolerated(0.66) unknown(0) TCGA-E1-5307-01 15 62254029 62254029 C T VPS13C Missense_Mutation p.E1223K 0.18 deleterious(0.02) possibly_damaging(0.802) TCGA-E1-5307-01 15 93595609 93595609 G A RGMA Missense_Mutation p.R95W 0.12 deleterious(0) probably_damaging(0.951) TCGA-E1-5307-01 16 57550306 57550306 C T CCDC102A Missense_Mutation p.A440T 0.07 tolerated(0.45) benign(0.128) TCGA-E1-5307-01 17 37627827 37627827 C T CDK12 Missense_Mutation p.T581I 0.05 benign(0.348) TCGA-E1-5307-01 17 45915466 45915466 G A SCRN2 Intron 0.32 TCGA-E1-5307-01 17 61995729 61995729 C T GH1 Missense_Mutation p.A50T 0.20 deleterious(0) probably_damaging(0.987) TCGA-E1-5307-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.79 deleterious(0) probably_damaging(0.998) TCGA-E1-5307-01 18 19997797 19997797 A T CTAGE1 5'UTR 0.15 TCGA-E1-5307-01 18 74980584 74980584 C G GALR1 Missense_Mutation p.S259C 0.18 tolerated(1) benign(0.105) TCGA-E1-5307-01 19 1044692 1044692 C T ABCA7 Silent p.D388D 0.18 TCGA-E1-5307-01 19 42813898 42813898 G T PRR19 Silent p.V54V 0.06 TCGA-E1-5307-01 19 50475156 50475156 G A VRK3 3'Flank 0.12 TCGA-E1-5307-01 19 52447902 52447902 G A ZNF613 Missense_Mutation p.G256R 0.31 tolerated(0.18) possibly_damaging(0.78) TCGA-E1-5307-01 1 113637236 113637236 A G LRIG2 Missense_Mutation p.E221G 0.23 deleterious(0) possibly_damaging(0.852) TCGA-E1-5307-01 1 117504195 117504195 G C PTGFRN Missense_Mutation p.C515S 0.34 deleterious(0) probably_damaging(0.999) TCGA-E1-5307-01 1 119683216 119683216 C T WARS2 Missense_Mutation p.A18T 0.33 tolerated(0.27) benign(0.069) TCGA-E1-5307-01 1 204587235 204587235 G A LRRN2 Missense_Mutation p.P629L 0.16 tolerated(0.43) benign(0.001) TCGA-E1-5307-01 1 205819185 205819185 C A PM20D1 Missense_Mutation p.V6F 0.21 deleterious(0.05) benign(0.021) TCGA-E1-5307-01 1 247835572 247835572 G T OR13G1 Missense_Mutation p.R258S 0.47 tolerated(0.62) possibly_damaging(0.855) TCGA-E1-5307-01 21 17250117 17250117 A G USP25 Silent p.K934K 0.36 TCGA-E1-5307-01 21 28217371 28217371 T C ADAMTS1 5'UTR 0.27 TCGA-E1-5307-01 21 45746603 45746603 G A PFKL Missense_Mutation p.R734H 0.27 deleterious(0) possibly_damaging(0.811) TCGA-E1-5307-01 21 46309270 46309270 C T ITGB2 Missense_Mutation p.V600I 0.07 tolerated(0.2) benign(0.002) TCGA-E1-5307-01 22 41783620 41783620 A G TEF Silent p.P141P 0.37 TCGA-E1-5307-01 2 113591147 113591147 G A IL1B Silent p.S35S 0.23 TCGA-E1-5307-01 2 116538514 116538514 A G DPP10 Missense_Mutation p.T480A 0.35 tolerated(0.18) benign(0.033) TCGA-E1-5307-01 2 118731539 118731539 A G CCDC93 Missense_Mutation p.I278T 0.61 deleterious(0) benign(0.206) TCGA-E1-5307-01 2 152376199 152376199 C T NEB Missense_Mutation p.M7521I 0.09 benign(0.34) TCGA-E1-5307-01 2 159672351 159672351 A C DAPL1 3'UTR 0.19 TCGA-E1-5307-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-5307-01 2 99006190 99006190 C T CNGA3 Silent p.T173T 0.12 TCGA-E1-5307-01 3 129389499 129389499 T C TMCC1 Silent p.E395E 0.08 TCGA-E1-5307-01 3 196229803 196229803 T C RNF168 Missense_Mutation p.Q81R 0.37 deleterious(0.01) benign(0.079) TCGA-E1-5307-01 3 4354791 4354791 C T SETMAR Silent p.C122C 0.07 TCGA-E1-5307-01 3 52595944 52595944 C - PBRM1 Frame_Shift_Del p.G1324Afs*8 0.32 TCGA-E1-5307-01 3 98002530 98002530 C T OR5H2 Missense_Mutation p.P267S 0.11 tolerated(0.06) possibly_damaging(0.841) TCGA-E1-5307-01 4 110895897 110895897 G A EGF Missense_Mutation p.R588H 0.28 tolerated(1) benign(0.001) TCGA-E1-5307-01 4 53249 53249 G T ZNF595 5'UTR 0.05 TCGA-E1-5307-01 4 96762461 96762461 T C PDHA2 Missense_Mutation p.V387A 0.41 tolerated(0.06) benign(0.006) TCGA-E1-5307-01 5 140769361 140769361 G A PCDHGB4 Missense_Mutation p.R637H 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-E1-5307-01 5 55250757 55250757 G A IL6ST Missense_Mutation p.T444I 0.04 deleterious(0.05) possibly_damaging(0.718) TCGA-E1-5307-01 5 86627234 86627238 TTATC - RASA1 Frame_Shift_Del p.L205Kfs*4 0.23 TCGA-E1-5307-01 6 30632747 30632747 G A DHX16 Missense_Mutation p.S383L 0.10 tolerated(0.43) unknown(0) TCGA-E1-5307-01 6 32038129 32038129 G C TNXB Missense_Mutation p.P1685A 0.11 probably_damaging(0.996) TCGA-E1-5307-01 6 46803179 46803179 C T MEP1A Silent p.G659G 0.12 TCGA-E1-5307-01 7 105669001 105669001 G A CDHR3 Silent p.T759T 0.39 TCGA-E1-5307-01 7 138711561 138711561 G C ZC3HAV1L Missense_Mutation p.T260S 0.15 tolerated(0.34) benign(0.014) TCGA-E1-5307-01 7 38393489 38393489 C T TRGV4 Missense_Mutation p.A61T 0.05 deleterious(0.01) probably_damaging(0.986) TCGA-E1-5307-01 7 4026875 4026875 C T SDK1 Silent p.H684H 0.11 TCGA-E1-5307-01 8 102381123 102381123 C T NACAP1 RNA 0.08 TCGA-E1-5307-01 8 12946019 12946019 A C DLC1 Silent p.P1423P 0.16 TCGA-E1-5307-01 8 17581236 17581236 T G MTUS1 Silent p.G798G 0.11 TCGA-E1-5307-01 8 18393458 18393458 T C PSD3 Missense_Mutation p.Y980C 0.12 deleterious(0) probably_damaging(0.999) TCGA-E1-5307-01 8 33357852 33357852 C T TTI2 Silent p.R472R 0.05 TCGA-E1-5307-01 8 35406823 35406823 C T UNC5D Silent p.G39G 0.32 TCGA-E1-5307-01 8 94747027 94747027 C G RBM12B Missense_Mutation p.D538H 0.13 deleterious(0.04) benign(0.322) TCGA-E1-5307-01 8 94747221 94747221 C G RBM12B Missense_Mutation p.R473T 0.14 tolerated(0.1) probably_damaging(0.989) TCGA-E1-5307-01 8 94747336 94747336 C T RBM12B Missense_Mutation p.D435N 0.16 deleterious(0) probably_damaging(0.999) TCGA-E1-5307-01 8 94747712 94747712 C G RBM12B Silent p.L309L 0.15 TCGA-E1-5307-01 8 94747854 94747854 C G RBM12B Missense_Mutation p.R262T 0.10 tolerated(0.05) probably_damaging(0.989) TCGA-E1-5307-01 8 94747893 94747893 C T RBM12B Missense_Mutation p.R249K 0.08 tolerated(0.22) possibly_damaging(0.554) TCGA-E1-5307-01 8 94747940 94747940 C A RBM12B Missense_Mutation p.W233C 0.13 deleterious(0) probably_damaging(0.998) TCGA-E1-5307-01 8 94747956 94747956 C T RBM12B Missense_Mutation p.G228E 0.12 deleterious(0.02) possibly_damaging(0.801) TCGA-E1-5307-01 8 94748053 94748053 C T RBM12B Missense_Mutation p.D196N 0.11 tolerated(0.36) probably_damaging(0.951) TCGA-E1-5307-01 8 94748131 94748131 C T RBM12B Missense_Mutation p.D170N 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-E1-5307-01 9 109689383 109689383 C T ZNF462 Nonsense_Mutation p.Q1064* 0.08 TCGA-E1-5307-01 9 116358026 116358026 C T RGS3 Missense_Mutation p.A1131V 0.34 deleterious(0) probably_damaging(0.992) TCGA-E1-5307-01 9 119461244 119461244 G A TRIM32 Missense_Mutation p.R408H 0.46 tolerated(0.08) benign(0.028) TCGA-E1-5307-01 9 140079392 140079392 T C ANAPC2 Missense_Mutation p.I341V 0.11 deleterious(0.03) benign(0.012) TCGA-E1-5307-01 9 19360274 19360274 T - DENND4C Frame_Shift_Del p.V1683Ffs*6 0.14 TCGA-E1-5307-01 9 35366984 35366984 C T UNC13B Missense_Mutation p.P403L 0.44 tolerated_low_confidence(0.07) benign(0) TCGA-E1-5307-01 9 94495542 94495542 C T ROR2 Missense_Mutation p.E267K 0.22 deleterious(0) probably_damaging(0.973) TCGA-E1-5307-01 X 123785888 123785888 G A TENM1 Silent p.N485N 0.12 TCGA-E1-5307-01 X 69652495 69652495 A T GDPD2 Missense_Mutation p.T559S 0.15 tolerated(0.1) benign(0.028) TCGA-E1-5307-01 X 76939496 76939496 G A ATRX Nonsense_Mutation p.R418* 0.52 TCGA-E1-5307-01 X 92927163 92927163 C T NAP1L3 Missense_Mutation p.A381T 0.12 tolerated(0.14) benign(0.001) TCGA-E1-5311-01 11 70208264 70208264 G A PPFIA1 Silent p.T882T 0.40 TCGA-E1-5311-01 12 58129157 58129157 G A AGAP2 Missense_Mutation p.R408C 0.07 deleterious(0) probably_damaging(0.986) TCGA-E1-5311-01 15 100332827 100332827 G A AC090825.1 3'Flank 0.55 TCGA-E1-5311-01 16 89350191 89350191 C T ANKRD11 Missense_Mutation p.R920K 0.35 benign(0.054) TCGA-E1-5311-01 17 27994187 27994187 G A SSH2 Silent p.I261I 0.33 TCGA-E1-5311-01 19 42791718 42791718 C T CIC Missense_Mutation p.R202W 0.66 probably_damaging(1) TCGA-E1-5311-01 19 57765476 57765476 G A ZNF805 Missense_Mutation p.S430N 0.10 tolerated(0.33) benign(0.021) TCGA-E1-5311-01 1 150482440 150482440 A G ECM1 Missense_Mutation p.E116G 0.04 deleterious(0.03) possibly_damaging(0.853) TCGA-E1-5311-01 20 61488943 61488943 G A TCFL5 Missense_Mutation p.R348C 0.38 tolerated(0.06) possibly_damaging(0.891) TCGA-E1-5311-01 20 8862304 8862304 A C PLCB1 Missense_Mutation p.K1153N 0.40 deleterious(0) probably_damaging(0.955) TCGA-E1-5311-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-5311-01 2 37265041 37265041 G A HEATR5B Missense_Mutation p.A1058V 0.38 deleterious(0) probably_damaging(0.911) TCGA-E1-5311-01 3 109046813 109046813 A G DPPA4 3'UTR 0.36 TCGA-E1-5311-01 3 133653418 133653418 G A SLCO2A1 3'UTR 0.27 TCGA-E1-5311-01 3 160141575 160141575 G C SMC4 Missense_Mutation p.V758L 0.19 deleterious(0.02) benign(0.114) TCGA-E1-5311-01 4 142651106 142651106 T C IL15 Missense_Mutation p.I116T 0.26 tolerated(0.08) possibly_damaging(0.55) TCGA-E1-5311-01 4 79420950 79420950 A G FRAS1 Missense_Mutation p.N3064S 0.42 benign(0.034) TCGA-E1-5311-01 5 140724038 140724038 G A PCDHGA3 Silent p.T146T 0.53 TCGA-E1-5311-01 6 97702537 97702537 T C MMS22L Missense_Mutation p.M339V 0.04 tolerated(1) benign(0) TCGA-E1-5311-01 7 86526826 86526826 A C KIAA1324L Missense_Mutation p.F894C 0.34 deleterious(0.05) possibly_damaging(0.451) TCGA-E1-5311-01 8 36766859 36766859 C T KCNU1 Missense_Mutation p.R713W 0.40 deleterious(0) possibly_damaging(0.847) TCGA-E1-5311-01 9 139412204 139412204 C G NOTCH1 Missense_Mutation p.G481R 0.36 deleterious(0) probably_damaging(1) TCGA-E1-5318-01 10 105005791 105005791 A G RPEL1 Missense_Mutation p.N13S 0.43 tolerated(0.81) benign(0.003) TCGA-E1-5318-01 10 135038195 135038195 C T KNDC1 Missense_Mutation p.A1684V 0.30 deleterious(0) possibly_damaging(0.857) TCGA-E1-5318-01 10 89725263 89725263 A C PTEN 3'UTR 0.21 TCGA-E1-5318-01 11 107224323 107224323 T C CWF19L2 Missense_Mutation p.Q671R 0.39 tolerated(0.76) benign(0.008) TCGA-E1-5318-01 11 5602864 5602864 G A OR52B6 Missense_Mutation p.R253H 0.11 deleterious(0.03) possibly_damaging(0.515) TCGA-E1-5318-01 11 62299210 62299210 C T AHNAK Silent p.E893E 0.45 TCGA-E1-5318-01 12 118016978 118016978 G A KSR2 Missense_Mutation p.T424M 0.13 tolerated(0.06) benign(0.372) TCGA-E1-5318-01 12 122658748 122658748 G T IL31 5'Flank 0.54 TCGA-E1-5318-01 13 76382215 76382215 G A LMO7 Missense_Mutation p.G366E 0.30 deleterious(0) probably_damaging(0.996) TCGA-E1-5318-01 15 75012968 75012968 G C CYP1A1 Silent p.V467V 0.20 TCGA-E1-5318-01 15 90631838 90631838 C A IDH2 Missense_Mutation p.R172M 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-E1-5318-01 16 66436644 66436644 G A CDH5 Missense_Mutation p.V643I 0.23 tolerated(0.42) probably_damaging(0.967) TCGA-E1-5318-01 17 39521763 39521763 C T KRT33B Missense_Mutation p.V211M 0.42 deleterious(0) probably_damaging(0.978) TCGA-E1-5318-01 18 2913224 2913224 C T EMILIN2 Missense_Mutation p.P995L 0.05 deleterious(0) possibly_damaging(0.805) TCGA-E1-5318-01 19 36302867 36302867 C T PRODH2 Silent p.G274G 0.62 TCGA-E1-5318-01 19 42795241 42795242 - GCCCCCT CIC Frame_Shift_Ins p.V778Pfs*155 0.28 TCGA-E1-5318-01 19 51411835 51411835 C T KLK4 Missense_Mutation p.G159S 0.09 tolerated(0.33) probably_damaging(0.999) TCGA-E1-5318-01 19 51874996 51874996 C T NKG7 3'UTR 0.72 TCGA-E1-5318-01 19 53770498 53770498 C G VN1R4 Missense_Mutation p.V141L 0.54 tolerated(0.45) benign(0.026) TCGA-E1-5318-01 19 54177516 54177516 A G MIR498 RNA 0.80 TCGA-E1-5318-01 1 152193228 152193228 A G HRNR Missense_Mutation p.S293P 0.05 unknown(0) TCGA-E1-5318-01 1 169698637 169698637 G A SELE Missense_Mutation p.T298M 0.46 tolerated(0.14) benign(0.149) TCGA-E1-5318-01 1 177921090 177921090 G T SEC16B Missense_Mutation p.L502I 0.16 deleterious(0.02) possibly_damaging(0.768) TCGA-E1-5318-01 1 28212449 28212449 C T THEMIS2 3'UTR 0.82 TCGA-E1-5318-01 21 40590181 40590181 C T BRWD1 Missense_Mutation p.A1186T 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-E1-5318-01 2 102805614 102805614 C A IL1RL2 Missense_Mutation p.P46H 0.06 deleterious(0.02) possibly_damaging(0.907) TCGA-E1-5318-01 2 152521900 152521900 T A NEB Missense_Mutation p.M1729L 0.44 benign(0.019) TCGA-E1-5318-01 2 239051515 239051515 G A KLHL30 Missense_Mutation p.A284T 0.23 tolerated(0.52) benign(0.017) TCGA-E1-5318-01 2 74684817 74684817 G A INO80B Silent p.R299R 0.07 TCGA-E1-5318-01 2 74729789 74729789 G A LBX2 Intron 0.18 TCGA-E1-5318-01 3 164776970 164776970 A G SI Missense_Mutation p.Y422H 0.13 deleterious(0) probably_damaging(0.984) TCGA-E1-5318-01 4 162577528 162577528 C T FSTL5 Nonsense_Mutation p.W282* 0.14 TCGA-E1-5318-01 5 147281187 147281187 C T C5orf46 Intron 0.38 TCGA-E1-5318-01 5 70308387 70308387 C T NAIP Missense_Mutation p.R119K 0.40 tolerated(1) benign(0.001) TCGA-E1-5318-01 6 80746270 80746270 C A TTK Missense_Mutation p.A668E 0.04 deleterious(0) probably_damaging(0.994) TCGA-E1-5318-01 8 18725224 18725224 T C PSD3 Missense_Mutation p.I532V 0.40 tolerated(0.5) benign(0.003) TCGA-E1-5318-01 8 36671795 36671795 A G KCNU1 Missense_Mutation p.Y268C 0.10 deleterious(0) probably_damaging(1) TCGA-E1-5318-01 9 21333865 21333865 G A KLHL9 Missense_Mutation p.P332S 0.39 tolerated(0.25) benign(0.234) TCGA-E1-5318-01 9 35650242 35650242 C T SIT1 Missense_Mutation p.G99E 0.42 deleterious(0) probably_damaging(1) TCGA-E1-5318-01 X 118370561 118370561 C T PGRMC1 Missense_Mutation p.R79W 0.33 deleterious(0) probably_damaging(0.978) TCGA-E1-5318-01 X 119581704 119581704 G A LAMP2 Nonsense_Mutation p.Q245* 0.07 TCGA-E1-5318-01 X 19368118 19368118 G C PDHA1 Missense_Mutation p.G99R 0.43 deleterious(0.02) probably_damaging(0.976) TCGA-E1-5318-01 X 2867631 2867631 G A ARSE Missense_Mutation p.R190C 0.10 tolerated(0.12) probably_damaging(1) TCGA-E1-5318-01 X 30237371 30237371 A T MAGEB2 Missense_Mutation p.E225V 0.19 deleterious(0) benign(0.285) TCGA-E1-5318-01 X 39933875 39933875 C - BCOR Frame_Shift_Del p.E242Sfs*24 0.47 TCGA-E1-5318-01 X 70387552 70387552 G T NLGN3 Missense_Mutation p.M535I 0.04 tolerated(0.08) benign(0.292) TCGA-E1-5318-01 X 77301816 77301816 T G ATP7A Missense_Mutation p.Y1418D 0.04 deleterious(0.01) benign(0.121) TCGA-E1-5319-01 10 47087234 47087234 C T NPY4R Missense_Mutation p.P151S 0.18 deleterious(0) probably_damaging(1) TCGA-E1-5319-01 10 73453969 73453969 G A CDH23 Missense_Mutation p.A340T 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-E1-5319-01 11 118211223 118211223 C T CD3D Silent p.T47T 0.27 TCGA-E1-5319-01 11 122774732 122774732 G A C11orf63 Silent p.P148P 0.35 TCGA-E1-5319-01 11 62763251 62763251 T C SLC22A8 Missense_Mutation p.K309R 0.32 tolerated(0.33) probably_damaging(1) TCGA-E1-5319-01 11 73102213 73102213 C T RELT Silent p.P104P 0.38 TCGA-E1-5319-01 11 85420400 85420400 C T SYTL2 Silent p.A996A 0.27 TCGA-E1-5319-01 12 120966932 120966932 C A COQ5 Missense_Mutation p.G5W 0.31 deleterious_low_confidence(0.04) benign(0.003) TCGA-E1-5319-01 12 122677545 122677545 C - LRRC43 Frame_Shift_Del p.P449Qfs*33 0.21 TCGA-E1-5319-01 12 59272814 59272814 A C LRIG3 Silent p.A625A 0.25 TCGA-E1-5319-01 13 47409749 47409750 AA - HTR2A Frame_Shift_Del p.F213Wfs*10 0.17 TCGA-E1-5319-01 16 27448929 27448929 C T IL21R Silent p.D91D 0.05 TCGA-E1-5319-01 16 48162529 48162529 G A ABCC12 Silent p.T452T 0.33 TCGA-E1-5319-01 16 58072238 58072238 G A MMP15 Missense_Mutation p.R127Q 0.27 tolerated(0.1) possibly_damaging(0.539) TCGA-E1-5319-01 16 67961376 67961376 G A PSKH1 Missense_Mutation p.R369H 0.36 deleterious(0.04) possibly_damaging(0.656) TCGA-E1-5319-01 19 10479066 10479067 AA - TYK2 Frame_Shift_Del p.F74Cfs*76 0.26 TCGA-E1-5319-01 19 40097866 40097868 AAG - LGALS13 In_Frame_Del p.K103del 0.45 TCGA-E1-5319-01 19 42796905 42796906 TG - CIC Frame_Shift_Del p.V1122Gfs*28 0.22 TCGA-E1-5319-01 1 220791711 220791711 T C MARK1 Silent p.S204S 0.26 TCGA-E1-5319-01 1 78432577 78432577 T C FUBP1 Missense_Mutation p.I136V 0.45 deleterious(0) probably_damaging(0.959) TCGA-E1-5319-01 20 47732387 47732387 T C STAU1 Silent p.L550L 0.04 TCGA-E1-5319-01 22 37603800 37603800 G T SSTR3 Missense_Mutation p.P15T 0.30 tolerated(0.09) benign(0.193) TCGA-E1-5319-01 2 149241058 149241058 C T MBD5 Intron 0.17 TCGA-E1-5319-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-5319-01 2 74300737 74300737 C T TET3 Silent p.V717V 0.09 TCGA-E1-5319-01 3 108172944 108172944 C G MYH15 Missense_Mutation p.D790H 0.09 deleterious(0) benign(0.244) TCGA-E1-5319-01 3 140785590 140785590 C T SPSB4 Missense_Mutation p.A215V 0.04 deleterious(0) probably_damaging(0.992) TCGA-E1-5319-01 3 164767582 164767582 G A SI Missense_Mutation p.P532S 0.22 deleterious(0) probably_damaging(0.964) TCGA-E1-5319-01 3 167543186 167543186 G C SERPINI1 3'UTR 0.40 TCGA-E1-5319-01 4 1389154 1389154 G A CRIPAK Silent p.P285P 0.30 TCGA-E1-5319-01 4 69179953 69179953 C T YTHDC1 Missense_Mutation p.R683Q 0.39 tolerated_low_confidence(0.05) unknown(0) TCGA-E1-5319-01 5 167674845 167674845 C T TENM2 Missense_Mutation p.R2301C 0.25 deleterious(0.05) probably_damaging(0.953) TCGA-E1-5319-01 5 180420089 180420089 T A BTNL3 Missense_Mutation p.I109N 0.87 tolerated(0.27) benign(0.185) TCGA-E1-5319-01 6 152831491 152831491 T C SYNE1 Missense_Mutation p.S140G 0.43 possibly_damaging(0.613) TCGA-E1-5319-01 6 158504625 158504627 AGA - SYNJ2 In_Frame_Del p.E1011del 0.18 TCGA-E1-5319-01 6 33405883 33405883 C T SYNGAP1 Missense_Mutation p.R401W 0.12 deleterious(0) probably_damaging(0.999) TCGA-E1-5319-01 6 33665498 33665498 T C UQCC2 Missense_Mutation p.K105E 0.31 tolerated(0.06) probably_damaging(0.964) TCGA-E1-5319-01 7 141799485 141799485 C T MGAM Missense_Mutation p.R1712C 0.08 deleterious(0.01) probably_damaging(1) TCGA-E1-5319-01 7 151845685 151845686 GA - KMT2C Frame_Shift_Del p.Q4443Gfs*29 0.15 TCGA-E1-5319-01 8 1728624 1728624 A C CLN8 Missense_Mutation p.H251P 0.16 deleterious(0.02) probably_damaging(0.948) TCGA-E1-5319-01 9 125437655 125437655 G A OR1L3 Missense_Mutation p.V83M 0.29 tolerated(0.07) benign(0.068) TCGA-E1-5319-01 9 134404915 134404915 T - UCK1 Frame_Shift_Del p.T114Rfs*10 0.25 TCGA-E1-5319-01 9 20360828 20360828 C T MLLT3 Missense_Mutation p.S448N 0.20 tolerated(0.07) probably_damaging(0.968) TCGA-E1-5319-01 X 107816843 107816843 C T COL4A5 Missense_Mutation p.P169S 0.26 unknown(0) TCGA-E1-5319-01 X 12735805 12735805 C T FRMPD4 Missense_Mutation p.P954S 0.03 tolerated_low_confidence(0.21) benign(0.009) TCGA-E1-5319-01 X 134992597 134992597 C T SAGE1 Missense_Mutation p.R630C 0.32 tolerated(0.13) possibly_damaging(0.685) TCGA-E1-5319-01 X 135956574 135956574 C T RBMX Silent p.P301P 0.27 TCGA-E1-5319-01 X 49022446 49022446 G A MAGIX Missense_Mutation p.G238E 0.28 tolerated(0.18) benign(0.117) TCGA-E1-5319-01 X 50213438 50213438 T C DGKK RNA 0.05 TCGA-E1-5322-01 10 43609023 43609023 A G RET Silent p.G593G 0.26 TCGA-E1-5322-01 10 5784139 5784140 AA - FAM208B Frame_Shift_Del p.N803Sfs*25 0.20 TCGA-E1-5322-01 10 78669755 78669755 G A KCNMA1 Missense_Mutation p.A1022V 0.04 deleterious(0) benign(0.159) TCGA-E1-5322-01 11 107299708 107299708 G T CWF19L2 Missense_Mutation p.T417K 0.07 tolerated(0.39) benign(0.028) TCGA-E1-5322-01 11 17111124 17111124 G C PIK3C2A 3'UTR 0.12 TCGA-E1-5322-01 11 34176285 34176285 G A ABTB2 Missense_Mutation p.T910I 0.44 tolerated(0.17) possibly_damaging(0.661) TCGA-E1-5322-01 11 70261803 70261803 A G CTTN Missense_Mutation p.E146G 0.38 tolerated(0.08) probably_damaging(0.998) TCGA-E1-5322-01 12 59271321 59271321 C T LRIG3 Silent p.S799S 0.40 TCGA-E1-5322-01 12 6347004 6347004 A G CD9 3'UTR 0.43 TCGA-E1-5322-01 16 24826581 24826581 C T TNRC6A Missense_Mutation p.R1596C 0.39 deleterious(0) probably_damaging(0.964) TCGA-E1-5322-01 17 27065006 27065006 C T NEK8 Silent p.L353L 0.43 TCGA-E1-5322-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.87 deleterious(0) probably_damaging(0.999) TCGA-E1-5322-01 17 9757822 9757822 A T GLP2R Missense_Mutation p.Y172F 0.10 tolerated(0.36) benign(0.067) TCGA-E1-5322-01 19 10165979 10165979 G A C3P1 RNA 0.12 TCGA-E1-5322-01 1 152192510 152192510 C T HRNR Missense_Mutation p.R532Q 0.10 unknown(0) TCGA-E1-5322-01 1 156880104 156880104 G A PEAR1 Missense_Mutation p.G586D 0.03 tolerated(0.25) probably_damaging(0.986) TCGA-E1-5322-01 1 206785802 206785802 G A EIF2D 5'UTR 0.30 TCGA-E1-5322-01 1 24124818 24124818 A G GALE Intron 0.10 TCGA-E1-5322-01 1 248570073 248570073 C - OR2T1 Frame_Shift_Del p.P260Lfs*4 0.18 TCGA-E1-5322-01 1 28598956 28598956 C T SESN2 Silent p.L172L 0.39 TCGA-E1-5322-01 21 46686096 46686096 C T POFUT2 Intron 0.13 TCGA-E1-5322-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-5322-01 2 228750104 228750104 G C DAW1 Missense_Mutation p.K26N 0.07 deleterious(0.01) possibly_damaging(0.451) TCGA-E1-5322-01 3 48506335 48506335 C T ATRIP Missense_Mutation p.R721W 0.09 deleterious(0) probably_damaging(0.999) TCGA-E1-5322-01 3 97983515 97983515 T C OR5H6 Silent p.F129F 0.08 TCGA-E1-5322-01 4 41646515 41646515 A C LIMCH1 Splice_Site p.X324_splice 0.53 TCGA-E1-5322-01 4 659049 659049 A G PDE6B Silent p.A733A 0.25 TCGA-E1-5322-01 6 129475728 129475728 G A LAMA2 Missense_Mutation p.R369H 0.43 tolerated(1) benign(0.001) TCGA-E1-5322-01 6 30708275 30708275 G A FLOT1 Missense_Mutation p.R190W 0.43 deleterious(0) possibly_damaging(0.556) TCGA-E1-5322-01 6 41554783 41554783 C T FOXP4 Missense_Mutation p.L183F 0.11 tolerated(0.08) possibly_damaging(0.878) TCGA-E1-5322-01 7 20198861 20198861 A G MACC1 Missense_Mutation p.Y375H 0.42 deleterious(0) probably_damaging(0.945) TCGA-E1-5322-01 7 35242048 35242048 A C TBX20 Missense_Mutation p.F446L 0.37 deleterious_low_confidence(0.02) benign(0.076) TCGA-E1-5322-01 8 68028332 68028332 G A CSPP1 Missense_Mutation p.A486T 0.03 tolerated(1) benign(0.003) TCGA-E1-5322-01 9 130507277 130507277 C T SH2D3C Missense_Mutation p.A456T 0.11 tolerated(0.38) benign(0.003) TCGA-E1-5322-01 X 135323365 135323365 T A MAP7D3 Missense_Mutation p.R163S 0.40 deleterious(0) probably_damaging(1) TCGA-E1-5322-01 X 76944356 76944356 T - ATRX Frame_Shift_Del p.D184Ifs*22 0.33 TCGA-E1-A7YD-01 10 118969303 118969303 A C KCNK18 Silent p.T216T 0.68 TCGA-E1-A7YD-01 10 43882891 43882891 C T HNRNPF Missense_Mutation p.E148K 0.27 tolerated(0.07) benign(0.017) TCGA-E1-A7YD-01 11 102666018 102666018 A T MMP1 Silent p.R262R 0.60 TCGA-E1-A7YD-01 11 18955787 18955787 G A MRGPRX1 Missense_Mutation p.A182V 0.67 tolerated(0.09) benign(0.047) TCGA-E1-A7YD-01 11 58711063 58711063 A T GLYATL1 Silent p.G24G 0.21 TCGA-E1-A7YD-01 11 64603246 64603246 C T CDC42BPG Silent p.S582S 0.17 TCGA-E1-A7YD-01 12 117691474 117691474 A G NOS1 Missense_Mutation p.F907L 0.62 tolerated(0.66) possibly_damaging(0.874) TCGA-E1-A7YD-01 12 21918642 21918642 G A KCNJ8 3'UTR 0.49 TCGA-E1-A7YD-01 12 55248906 55248906 C T MUCL1 Missense_Mutation p.P22L 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-E1-A7YD-01 12 83526152 83526152 A G TMTC2 Missense_Mutation p.K832R 0.15 tolerated_low_confidence(1) benign(0.002) TCGA-E1-A7YD-01 13 25338340 25338340 C T RNF17 5'UTR 0.33 TCGA-E1-A7YD-01 14 24606640 24606640 G A PSME1 Silent p.E82E 0.77 TCGA-E1-A7YD-01 15 45050943 45050943 A G TRIM69 Missense_Mutation p.E235G 0.09 deleterious(0) probably_damaging(0.928) TCGA-E1-A7YD-01 16 31391335 31391335 C T ITGAX Silent p.I1003I 0.50 TCGA-E1-A7YD-01 16 33965541 33965541 C A RNA5-8SP2 RNA 0.35 TCGA-E1-A7YD-01 16 33965544 33965544 G T RNA5-8SP2 RNA 0.31 TCGA-E1-A7YD-01 16 90001621 90001621 C T TUBB3 Silent p.A254A 0.45 TCGA-E1-A7YD-01 17 13977745 13977745 T G COX10 Missense_Mutation p.F50C 0.42 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-E1-A7YD-01 17 62891049 62891049 C T LRRC37A3 Missense_Mutation p.R776H 0.19 tolerated(0.34) benign(0) TCGA-E1-A7YD-01 17 67280148 67280148 T A ABCA5 Missense_Mutation p.T780S 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-E1-A7YD-01 17 74287133 74287133 G A QRICH2 Silent p.T1059T 0.48 TCGA-E1-A7YD-01 17 74477621 74477621 G A RHBDF2 5'UTR 0.45 TCGA-E1-A7YD-01 17 7578524 7578524 G A TP53 Nonsense_Mutation p.Q136* 0.88 TCGA-E1-A7YD-01 18 12311033 12311033 G T TUBB6 Silent p.R86R 0.21 TCGA-E1-A7YD-01 19 51361822 51361822 C T KLK3 Missense_Mutation p.R201C 0.22 tolerated(0.08) benign(0.001) TCGA-E1-A7YD-01 19 5594175 5594175 C T SAFB2 Missense_Mutation p.R645Q 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-E1-A7YD-01 19 58084238 58084239 - A ZNF416 Frame_Shift_Ins p.C345Lfs*11 0.21 TCGA-E1-A7YD-01 19 643472 643472 C T FGF22 Silent p.Y127Y 0.55 TCGA-E1-A7YD-01 1 13474981 13474981 C T PRAMEF18 Missense_Mutation p.C383Y 0.70 tolerated(0.23) benign(0.003) TCGA-E1-A7YD-01 1 152284691 152284691 T G FLG Missense_Mutation p.S891R 0.20 probably_damaging(0.995) TCGA-E1-A7YD-01 1 158450293 158450293 G T OR10R2 Missense_Mutation p.C209F 0.37 deleterious(0.02) probably_damaging(0.961) TCGA-E1-A7YD-01 1 176659691 176659691 G C PAPPA2 Intron 0.33 TCGA-E1-A7YD-01 1 20072024 20072024 C T TMCO4 Splice_Site p.X293_splice 0.23 TCGA-E1-A7YD-01 1 205350789 205350789 A T LEMD1 Silent p.G181G 0.14 TCGA-E1-A7YD-01 1 237758859 237758859 C T RYR2 Missense_Mutation p.R1500C 0.42 probably_damaging(0.98) TCGA-E1-A7YD-01 1 31211793 31211793 G T LAPTM5 Missense_Mutation p.N168K 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-E1-A7YD-01 1 44415582 44415582 G A IPO13 Missense_Mutation p.S193N 0.57 tolerated(0.1) benign(0.317) TCGA-E1-A7YD-01 1 84880391 84880391 G A DNASE2B Missense_Mutation p.C309Y 0.24 deleterious(0) probably_damaging(0.964) TCGA-E1-A7YD-01 20 23669471 23669471 G A CST4 Missense_Mutation p.R46C 0.63 deleterious(0.03) benign(0.071) TCGA-E1-A7YD-01 20 36560079 36560079 G A VSTM2L Missense_Mutation p.G55D 0.53 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YD-01 20 43836216 43836216 C T SEMG1 Missense_Mutation p.T93M 0.57 tolerated(0.44) benign(0.04) TCGA-E1-A7YD-01 20 61981166 61981166 A G CHRNA4 Missense_Mutation p.C533R 0.15 tolerated(0.11) probably_damaging(0.952) TCGA-E1-A7YD-01 21 46321434 46321434 G A ITGB2 Silent p.D238D 0.30 TCGA-E1-A7YD-01 2 1204826 1204826 C T SNTG2 Missense_Mutation p.P210L 0.35 tolerated(0.32) probably_damaging(0.916) TCGA-E1-A7YD-01 2 141747212 141747212 G C LRP1B Missense_Mutation p.P887A 0.37 probably_damaging(0.973) TCGA-E1-A7YD-01 2 238289918 238289918 G A COL6A3 Missense_Mutation p.R513W 0.44 probably_damaging(0.999) TCGA-E1-A7YD-01 2 242433520 242433520 G C FARP2 Missense_Mutation p.V1049L 0.21 tolerated_low_confidence(0.91) benign(0) TCGA-E1-A7YD-01 2 31589808 31589808 G A XDH Silent p.T750T 0.49 TCGA-E1-A7YD-01 3 178916614 178916614 A G PIK3CA Translation_Start_Site p.M1? 0.71 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-E1-A7YD-01 3 38565450 38565450 G A EXOG Missense_Mutation p.R235H 0.04 deleterious(0) probably_damaging(0.97) TCGA-E1-A7YD-01 3 51897231 51897231 C T IQCF2 Missense_Mutation p.R114C 0.57 tolerated(0.11) benign(0.391) TCGA-E1-A7YD-01 3 97888411 97888411 T C OR5H15 Missense_Mutation p.Y290H 0.04 deleterious(0) probably_damaging(0.992) TCGA-E1-A7YD-01 4 109680921 109680924 AACA - ETNPPL Frame_Shift_Del p.C106Ifs*12 0.47 TCGA-E1-A7YD-01 4 20728986 20728987 - T PACRGL 3'UTR 0.34 TCGA-E1-A7YD-01 4 55593606 55593606 A G KIT Missense_Mutation p.K558E 0.14 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YD-01 5 132216761 132216761 A T AFF4 Nonsense_Mutation p.L1161* 0.44 TCGA-E1-A7YD-01 5 148619346 148619346 C T ABLIM3 Missense_Mutation p.R367W 0.37 deleterious(0.01) possibly_damaging(0.886) TCGA-E1-A7YD-01 5 149513469 149513469 A C PDGFRB Missense_Mutation p.F245C 0.60 deleterious(0) probably_damaging(0.996) TCGA-E1-A7YD-01 6 129828695 129828695 T A LAMA2 Missense_Mutation p.L2922Q 0.22 tolerated(0.37) possibly_damaging(0.456) TCGA-E1-A7YD-01 6 160448256 160448256 C A IGF2R Missense_Mutation p.P229H 0.57 deleterious(0.05) possibly_damaging(0.906) TCGA-E1-A7YD-01 6 20488347 20488347 C T E2F3 Silent p.L335L 0.10 TCGA-E1-A7YD-01 6 39828775 39828775 C A DAAM2 Silent p.I80I 0.27 TCGA-E1-A7YD-01 6 52616422 52616422 C T GSTA2 Missense_Mutation p.V167M 0.24 tolerated(0.16) benign(0.262) TCGA-E1-A7YD-01 7 150932146 150932146 C G CHPF2 Missense_Mutation p.I92M 0.33 deleterious(0) probably_damaging(0.94) TCGA-E1-A7YD-01 7 2582924 2582924 C G BRAT1 Silent p.L279L 0.33 TCGA-E1-A7YD-01 7 50023025 50023025 C T ZPBP Missense_Mutation p.G292S 0.31 deleterious(0.02) probably_damaging(0.974) TCGA-E1-A7YD-01 7 55223604 55223604 G T EGFR Missense_Mutation p.R324L 0.92 deleterious(0.01) possibly_damaging(0.615) TCGA-E1-A7YD-01 7 66774605 66774605 A T STAG3L4 RNA 0.33 TCGA-E1-A7YD-01 7 72849620 72849620 G A FZD9 Missense_Mutation p.R428H 0.37 deleterious(0) probably_damaging(0.998) TCGA-E1-A7YD-01 7 82580275 82580275 T A PCLO Missense_Mutation p.Q3210L 0.12 unknown(0) TCGA-E1-A7YD-01 8 87683308 87683308 A G CNGB3 Silent p.P119P 0.31 TCGA-E1-A7YD-01 9 125316117 125316117 C A OR1N2 Missense_Mutation p.F223L 0.35 tolerated(0.61) benign(0.389) TCGA-E1-A7YD-01 9 127563860 127563860 C T OLFML2A Silent p.R279R 0.26 TCGA-E1-A7YD-01 9 133355812 133355812 C T ASS1 Missense_Mutation p.R272C 0.38 deleterious(0.02) possibly_damaging(0.473) TCGA-E1-A7YD-01 9 80923424 80923424 G A PSAT1 Missense_Mutation p.R222Q 0.41 tolerated(0.08) benign(0.002) TCGA-E1-A7YD-01 X 83129602 83129602 T C CYLC1 Missense_Mutation p.M629T 0.82 tolerated(0.17) benign(0.083) TCGA-E1-A7YE-01 10 123846263 123846263 C T TACC2 Silent p.F1416F 0.05 TCGA-E1-A7YE-01 10 135106174 135106174 C G TUBGCP2 Missense_Mutation p.G376A 0.36 tolerated(0.32) possibly_damaging(0.751) TCGA-E1-A7YE-01 10 58118576 58118576 T G ZWINT Missense_Mutation p.K205Q 0.15 tolerated(0.05) possibly_damaging(0.895) TCGA-E1-A7YE-01 10 74692199 74692199 C T OIT3 Missense_Mutation p.R519C 0.10 deleterious(0) probably_damaging(1) TCGA-E1-A7YE-01 10 8100475 8100475 T C GATA3 Missense_Mutation p.L150P 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-E1-A7YE-01 10 95556899 95556899 T A LGI1 Missense_Mutation p.F338Y 0.34 deleterious(0.01) probably_damaging(1) TCGA-E1-A7YE-01 11 103058176 103058176 C T DYNC2H1 Missense_Mutation p.T2334I 0.38 benign(0.036) TCGA-E1-A7YE-01 11 108577517 108577517 T A DDX10 Silent p.A425A 0.41 TCGA-E1-A7YE-01 12 11507489 11507489 C G PRB1 Splice_Site p.X22_splice 0.25 TCGA-E1-A7YE-01 12 41966618 41966618 G C PDZRN4 Missense_Mutation p.E679D 0.38 deleterious(0.01) probably_damaging(0.99) TCGA-E1-A7YE-01 12 53073597 53073597 C G KRT1 Missense_Mutation p.R179P 0.36 deleterious(0) possibly_damaging(0.898) TCGA-E1-A7YE-01 12 66786258 66786258 T A GRIP1 Missense_Mutation p.K713M 0.10 deleterious(0.02) benign(0.424) TCGA-E1-A7YE-01 14 103804229 103804229 T G EIF5 Intron 0.39 TCGA-E1-A7YE-01 14 22102379 22102379 T C OR10G2 Missense_Mutation p.D207G 0.49 deleterious(0) possibly_damaging(0.79) TCGA-E1-A7YE-01 14 23517549 23517549 G C CDH24 Missense_Mutation p.I700M 0.41 tolerated(0.3) benign(0.134) TCGA-E1-A7YE-01 14 35873813 35873813 A C NFKBIA Missense_Mutation p.M13R 0.55 tolerated(0.2) benign(0) TCGA-E1-A7YE-01 14 75266314 75266314 T G YLPM1 Silent p.S1438S 0.47 TCGA-E1-A7YE-01 15 56155250 56155250 C G NEDD4 Missense_Mutation p.D526H 0.41 deleterious(0.01) possibly_damaging(0.897) TCGA-E1-A7YE-01 15 65847277 65847277 C T PTPLAD1 Silent p.F61F 0.33 TCGA-E1-A7YE-01 15 78765756 78765756 C G IREB2 Intron 0.45 TCGA-E1-A7YE-01 15 81518014 81518014 G A IL16 Missense_Mutation p.D92N 0.20 deleterious(0) possibly_damaging(0.776) TCGA-E1-A7YE-01 17 10411733 10411733 G A MYH1 Missense_Mutation p.S615F 0.15 deleterious(0) possibly_damaging(0.718) TCGA-E1-A7YE-01 17 38953433 38953433 G A KRT28 Missense_Mutation p.A264V 0.17 deleterious(0.01) possibly_damaging(0.869) TCGA-E1-A7YE-01 17 45199936 45199936 C T CDC27 Missense_Mutation p.A762T 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-E1-A7YE-01 17 61560492 61560492 G A ACE Missense_Mutation p.R482H 0.04 tolerated(0.15) benign(0.005) TCGA-E1-A7YE-01 17 66446947 66446947 C G WIPI1 Silent p.V85V 0.43 TCGA-E1-A7YE-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.22 deleterious(0) probably_damaging(0.998) TCGA-E1-A7YE-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.49 deleterious(0) probably_damaging(0.997) TCGA-E1-A7YE-01 17 7760816 7760816 C G LSMD1 5'UTR 0.30 TCGA-E1-A7YE-01 17 79857259 79857259 C G ANAPC11 Missense_Mutation p.S84C 0.39 deleterious_low_confidence(0.04) possibly_damaging(0.843) TCGA-E1-A7YE-01 18 33283583 33283583 C G GALNT1 Missense_Mutation p.N503K 0.35 tolerated(0.12) possibly_damaging(0.785) TCGA-E1-A7YE-01 18 33283593 33283593 G T GALNT1 Nonsense_Mutation p.E507* 0.36 TCGA-E1-A7YE-01 18 77624229 77624229 G C KCNG2 Missense_Mutation p.A188P 0.36 tolerated(0.07) benign(0.028) TCGA-E1-A7YE-01 19 10795094 10795094 G C ILF3 Intron 0.35 TCGA-E1-A7YE-01 19 14866522 14866522 T C EMR2 Missense_Mutation p.S454G 0.41 deleterious(0.01) benign(0.016) TCGA-E1-A7YE-01 19 15483080 15483080 G C AKAP8 Missense_Mutation p.P314A 0.47 deleterious(0.01) possibly_damaging(0.637) TCGA-E1-A7YE-01 19 54255706 54255706 G C MIR519A1 RNA 0.60 TCGA-E1-A7YE-01 19 9067115 9067115 C G MUC16 Missense_Mutation p.M6777I 0.44 unknown(0) TCGA-E1-A7YE-01 1 152285924 152285924 A G FLG Missense_Mutation p.S480P 0.34 probably_damaging(0.975) TCGA-E1-A7YE-01 1 157768008 157768008 C G FCRL1 Missense_Mutation p.E353Q 0.21 tolerated(0.11) benign(0.132) TCGA-E1-A7YE-01 1 205126503 205126503 G A DSTYK Silent p.T750T 0.11 TCGA-E1-A7YE-01 1 248757066 248757066 G A OR2T10 Missense_Mutation p.R2W 0.11 tolerated(0.1) benign(0) TCGA-E1-A7YE-01 1 43896293 43896293 C G SZT2 Missense_Mutation p.T1479S 0.36 tolerated(0.13) probably_damaging(0.987) TCGA-E1-A7YE-01 1 70509663 70509663 T G LRRC7 Silent p.V1294V 0.41 TCGA-E1-A7YE-01 21 15352091 15352091 G A ANKRD20A11P RNA 0.22 TCGA-E1-A7YE-01 22 50320925 50320925 G A CRELD2 Silent p.P393P 0.16 TCGA-E1-A7YE-01 2 165970412 165970412 G C SCN3A Missense_Mutation p.L1195V 0.43 tolerated(0.14) benign(0.075) TCGA-E1-A7YE-01 2 178097223 178097223 G C NFE2L2 Nonsense_Mutation p.S164* 0.66 TCGA-E1-A7YE-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7YE-01 3 110837743 110837743 T C PVRL3 Missense_Mutation p.V248A 0.13 deleterious(0) probably_damaging(0.994) TCGA-E1-A7YE-01 3 121634491 121634491 C G SLC15A2 Missense_Mutation p.C216W 0.33 deleterious(0) probably_damaging(1) TCGA-E1-A7YE-01 3 132068806 132068806 C G ACPP Missense_Mutation p.T275S 0.35 tolerated(0.21) benign(0.027) TCGA-E1-A7YE-01 3 190127816 190127816 A C CLDN16 Silent p.T303T 0.37 TCGA-E1-A7YE-01 3 194790669 194790669 G A XXYLT1 Silent p.A319A 0.40 TCGA-E1-A7YE-01 3 195484133 195484133 C G MUC4 Missense_Mutation p.S5018T 0.36 benign(0.002) TCGA-E1-A7YE-01 3 42572300 42572300 C T VIPR1 Silent p.F222F 0.12 TCGA-E1-A7YE-01 3 64644310 64644310 C G ADAMTS9 Missense_Mutation p.K279N 0.40 tolerated(0.19) benign(0.004) TCGA-E1-A7YE-01 3 89390202 89390202 T C EPHA3 Silent p.P317P 0.44 TCGA-E1-A7YE-01 4 126369874 126369874 G C FAT4 Missense_Mutation p.R2568T 0.31 benign(0.098) TCGA-E1-A7YE-01 4 126402777 126402777 C T FAT4 Nonsense_Mutation p.R4234* 0.11 TCGA-E1-A7YE-01 4 158057967 158057967 C G GLRB Missense_Mutation p.T180S 0.36 deleterious(0.01) probably_damaging(0.965) TCGA-E1-A7YE-01 4 62599060 62599060 A G LPHN3 Missense_Mutation p.E328G 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-E1-A7YE-01 4 69817371 69817371 C A UGT2A3 Missense_Mutation p.W36C 0.15 deleterious(0) probably_damaging(1) TCGA-E1-A7YE-01 5 138657690 138657690 C G MATR3 Missense_Mutation p.S569C 0.36 tolerated(0.39) probably_damaging(0.997) TCGA-E1-A7YE-01 5 140215035 140215035 C G PCDHA7 Missense_Mutation p.S356C 0.38 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-E1-A7YE-01 5 156751081 156751081 T A CYFIP2 Missense_Mutation p.S582R 0.14 deleterious(0.03) possibly_damaging(0.493) TCGA-E1-A7YE-01 5 180038441 180038441 C G FLT4 Missense_Mutation p.Q1192H 0.68 tolerated(0.58) benign(0.021) TCGA-E1-A7YE-01 5 23526454 23526454 A G PRDM9 Silent p.P419P 0.35 TCGA-E1-A7YE-01 5 67591247 67591247 G C PIK3R1 Splice_Site p.X582_splice 0.30 TCGA-E1-A7YE-01 6 31508266 31508266 T C DDX39B Missense_Mutation p.D15G 0.11 deleterious(0.04) benign(0.21) TCGA-E1-A7YE-01 6 32782245 32782245 T C HLA-DOB Silent p.R165R 0.09 TCGA-E1-A7YE-01 6 88374460 88374460 G C ORC3 Splice_Site p.X613_splice 0.45 TCGA-E1-A7YE-01 7 100478923 100478923 G A SRRT Missense_Mutation p.R47H 0.39 deleterious(0.02) unknown(0) TCGA-E1-A7YE-01 7 73927216 73927216 G C GTF2IRD1 Missense_Mutation p.E60D 0.25 tolerated(0.37) benign(0.358) TCGA-E1-A7YE-01 8 68116926 68116926 C G ARFGEF1 Missense_Mutation p.A1650P 0.34 tolerated(0.05) probably_damaging(0.934) TCGA-E1-A7YE-01 8 86115377 86115377 A G E2F5 Silent p.R131R 0.38 TCGA-E1-A7YE-01 9 94486331 94486331 C T ROR2 Silent p.P815P 0.20 TCGA-E1-A7YE-01 X 101912628 101912628 C T GPRASP1 Missense_Mutation p.H1263Y 0.41 tolerated(0.15) benign(0.174) TCGA-E1-A7YE-01 X 135310868 135310868 T C MAP7D3 Silent p.T600T 0.21 TCGA-E1-A7YE-01 X 135405259 135405259 C A GPR112 Silent p.G131G 0.38 TCGA-E1-A7YE-01 X 135485410 135485410 G A GPR112 Silent p.P2861P 0.42 TCGA-E1-A7YE-01 X 135591290 135591290 G C HTATSF1 Missense_Mutation p.R292P 0.11 deleterious(0) possibly_damaging(0.828) TCGA-E1-A7YE-01 X 152225469 152225469 G T PNMA3 Missense_Mutation p.R19S 0.37 deleterious(0) possibly_damaging(0.835) TCGA-E1-A7YE-01 X 154091433 154091433 A C F8 Missense_Mutation p.Y2167D 0.34 deleterious(0) probably_damaging(1) TCGA-E1-A7YE-01 X 3248147 3248147 C T MXRA5 Silent p.P207P 0.27 TCGA-E1-A7YE-01 X 46949264 46949264 T C RGN Missense_Mutation p.Y146H 0.13 tolerated(1) benign(0.001) TCGA-E1-A7YE-01 X 70339254 70339254 G C MED12 Missense_Mutation p.G44A 0.27 probably_damaging(0.999) TCGA-E1-A7YE-01 X 73041569 73041569 A G XIST RNA 0.27 TCGA-E1-A7YE-01 X 76813056 76813056 C G ATRX Missense_Mutation p.V2189L 0.43 probably_damaging(0.963) TCGA-E1-A7YH-01 10 128974295 128974295 C T FAM196A Missense_Mutation p.R122H 0.05 deleterious(0) probably_damaging(1) TCGA-E1-A7YH-01 10 24909113 24909113 G A ARHGAP21 Nonsense_Mutation p.R571* 0.04 TCGA-E1-A7YH-01 10 70332828 70332828 C T TET1 Nonsense_Mutation p.Q245* 0.37 TCGA-E1-A7YH-01 11 47196860 47196860 G A ARFGAP2 Missense_Mutation p.A90V 0.36 deleterious(0.03) benign(0.117) TCGA-E1-A7YH-01 12 113532652 113532652 G A DTX1 Missense_Mutation p.R429Q 0.36 tolerated(0.53) benign(0.217) TCGA-E1-A7YH-01 12 72355428 72355428 T C TPH2 Intron 0.08 TCGA-E1-A7YH-01 15 52060571 52060574 AGAA - TMOD2 Frame_Shift_Del p.K81Tfs*24 0.19 TCGA-E1-A7YH-01 16 66643846 66643846 G A CMTM3 Missense_Mutation p.V154M 0.09 tolerated(0.15) benign(0.104) TCGA-E1-A7YH-01 17 59560652 59560652 T C TBX4 Silent p.F471F 0.22 TCGA-E1-A7YH-01 17 62758555 62758555 T C hsa-mir-6080 RNA 0.33 TCGA-E1-A7YH-01 17 7577108 7577108 C A TP53 Missense_Mutation p.C277F 0.68 deleterious(0) probably_damaging(0.949) TCGA-E1-A7YH-01 18 30091799 30091799 A G WBP11P1 RNA 0.29 TCGA-E1-A7YH-01 18 60242148 60242148 C T ZCCHC2 Missense_Mutation p.P945L 0.36 deleterious(0) benign(0.403) TCGA-E1-A7YH-01 19 362157 362157 A G THEG 3'UTR 0.31 TCGA-E1-A7YH-01 1 173526585 173526585 C T SLC9C2 Missense_Mutation p.R370Q 0.29 tolerated(0.1) benign(0.131) TCGA-E1-A7YH-01 1 23520183 23520183 C T HTR1D Missense_Mutation p.R177Q 0.32 deleterious(0.04) probably_damaging(0.99) TCGA-E1-A7YH-01 1 39823120 39823120 A T MACF1 Missense_Mutation p.D1771V 0.07 benign(0.339) TCGA-E1-A7YH-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7YH-01 2 98264496 98264496 G A COX5B Silent p.L105L 0.11 TCGA-E1-A7YH-01 3 15126301 15126301 C T ZFYVE20 Missense_Mutation p.R180H 0.05 deleterious(0) probably_damaging(1) TCGA-E1-A7YH-01 3 50230983 50230983 G A GNAT1 Silent p.E112E 0.28 TCGA-E1-A7YH-01 4 115544143 115544143 A G UGT8 Missense_Mutation p.Y36C 0.36 deleterious(0.02) probably_damaging(1) TCGA-E1-A7YH-01 7 130138088 130138088 G A MEST Missense_Mutation p.D150N 0.34 tolerated(0.06) probably_damaging(1) TCGA-E1-A7YH-01 7 99661835 99661835 A G ZSCAN21 Silent p.K339K 0.39 TCGA-E1-A7YH-01 8 61121347 61121347 C T CA8 Silent p.Q290Q 0.24 TCGA-E1-A7YH-01 9 107298302 107298302 G A OR13C3 Missense_Mutation p.R265C 0.20 deleterious(0.04) benign(0.064) TCGA-E1-A7YH-01 9 107602687 107602687 G A ABCA1 Silent p.C309C 0.06 TCGA-E1-A7YH-01 X 100277044 100277044 A G TRMT2B Missense_Mutation p.L255P 0.08 deleterious(0) possibly_damaging(0.883) TCGA-E1-A7YH-01 X 118774726 118774726 C T SEPT6 Missense_Mutation p.G239D 0.16 deleterious(0) probably_damaging(1) TCGA-E1-A7YH-01 X 27998604 27998604 G A DCAF8L1 Missense_Mutation p.A283V 0.31 tolerated(0.19) benign(0.012) TCGA-E1-A7YH-01 X 2836162 2836162 G A ARSD Silent p.N182N 0.56 TCGA-E1-A7YH-01 X 69572507 69572507 G A KIF4A Splice_Site p.X496_splice 0.07 TCGA-E1-A7YH-01 X 76876000 76876000 C T ATRX Missense_Mutation p.G1712D 0.33 probably_damaging(1) TCGA-E1-A7YH-01 X 83127919 83127919 A G CYLC1 Missense_Mutation p.E68G 0.39 deleterious(0.05) probably_damaging(0.969) TCGA-E1-A7YH-01 X 83128300 83128300 G T CYLC1 Missense_Mutation p.C195F 0.25 tolerated(0.66) benign(0.025) TCGA-E1-A7YI-01 10 119012955 119012955 T C SLC18A2 Silent p.F170F 0.32 TCGA-E1-A7YI-01 10 18152487 18152487 T A MRC1 Missense_Mutation p.S553R 0.84 deleterious(0) probably_damaging(0.998) TCGA-E1-A7YI-01 10 21185916 21185916 C A NEBL Missense_Mutation p.A42S 0.11 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YI-01 10 23326313 23326313 C T ARMC3 Missense_Mutation p.P842S 0.23 tolerated(0.84) benign(0.052) TCGA-E1-A7YI-01 10 74631207 74631207 G C MCU Missense_Mutation p.A244P 0.53 deleterious(0.01) probably_damaging(0.979) TCGA-E1-A7YI-01 11 110036055 110036055 G A ZC3H12C Missense_Mutation p.D749N 0.47 tolerated(0.06) possibly_damaging(0.579) TCGA-E1-A7YI-01 11 111591740 111591740 C T SIK2 Missense_Mutation p.A633V 0.50 tolerated(0.14) benign(0.001) TCGA-E1-A7YI-01 11 124252770 124252770 G A OR8B2 Missense_Mutation p.T157M 0.43 tolerated_low_confidence(1) possibly_damaging(0.626) TCGA-E1-A7YI-01 11 125867117 125867117 G A CDON Missense_Mutation p.R783C 0.05 deleterious(0.04) probably_damaging(0.996) TCGA-E1-A7YI-01 12 102023226 102023226 G A MYBPC1 Missense_Mutation p.E40K 0.08 deleterious(0.01) benign(0.31) TCGA-E1-A7YI-01 12 112926872 112926872 C T PTPN11 Missense_Mutation p.R498W 0.46 deleterious(0.01) benign(0.396) TCGA-E1-A7YI-01 12 72366364 72366364 G A TPH2 Missense_Mutation p.R225Q 0.33 tolerated(0.05) benign(0.361) TCGA-E1-A7YI-01 12 97085074 97085074 A T C12orf55 Missense_Mutation p.R2084W 0.51 deleterious(0) benign(0.015) TCGA-E1-A7YI-01 13 37618313 37618313 C T SUPT20H Missense_Mutation p.E100K 0.33 deleterious(0) probably_damaging(1) TCGA-E1-A7YI-01 15 42170651 42170652 CT - SPTBN5 Frame_Shift_Del p.S1120Cfs*184 0.28 TCGA-E1-A7YI-01 15 51750758 51750758 G C DMXL2 Missense_Mutation p.L2694V 0.28 tolerated(0.06) benign(0.108) TCGA-E1-A7YI-01 15 74632093 74632093 G A CYP11A1 Missense_Mutation p.T331M 0.13 deleterious(0) probably_damaging(1) TCGA-E1-A7YI-01 17 18233958 18233958 A G SHMT1 Missense_Mutation p.V361A 0.35 deleterious(0.03) possibly_damaging(0.819) TCGA-E1-A7YI-01 17 39658985 39658985 C T KRT13 Missense_Mutation p.R326H 0.44 deleterious(0.05) benign(0.177) TCGA-E1-A7YI-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.50 TCGA-E1-A7YI-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.32 deleterious(0) probably_damaging(0.998) TCGA-E1-A7YI-01 17 7814264 7814264 C T CHD3 Nonsense_Mutation p.Q2011* 0.42 TCGA-E1-A7YI-01 19 10464804 10464804 C T TYK2 Missense_Mutation p.R941H 0.45 tolerated(0.16) benign(0.002) TCGA-E1-A7YI-01 19 23990676 23990676 T G RPSAP58 5'UTR 0.41 TCGA-E1-A7YI-01 19 40354340 40354340 C T FCGBP Missense_Mutation p.G5377R 0.35 benign(0.362) TCGA-E1-A7YI-01 19 56539151 56539151 C T NLRP5 Missense_Mutation p.R518C 0.55 tolerated(0.22) benign(0.01) TCGA-E1-A7YI-01 1 103355017 103355017 C T COL11A1 Silent p.G1486G 0.41 TCGA-E1-A7YI-01 20 30064294 30064294 C T REM1 Nonsense_Mutation p.R16* 0.40 TCGA-E1-A7YI-01 2 191795225 191795225 G T GLS Missense_Mutation p.M496I 0.37 deleterious(0.01) benign(0.273) TCGA-E1-A7YI-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7YI-01 2 231176177 231176177 C T SP140 Missense_Mutation p.A791V 0.40 tolerated(0.93) benign(0.044) TCGA-E1-A7YI-01 4 110581443 110581443 T - CCDC109B Frame_Shift_Del p.L90Cfs*30 0.33 TCGA-E1-A7YI-01 4 156631929 156631929 C T GUCY1A3 Silent p.Y204Y 0.09 TCGA-E1-A7YI-01 4 54308818 54308818 A C FIP1L1 Splice_Site p.X392_splice 0.94 TCGA-E1-A7YI-01 4 55136821 55136821 G C PDGFRA Silent p.L381L 0.26 TCGA-E1-A7YI-01 4 55136837 55136837 G A PDGFRA Missense_Mutation p.E387K 0.26 tolerated(0.15) benign(0.331) TCGA-E1-A7YI-01 4 55136846 55136846 G A PDGFRA Missense_Mutation p.G390S 0.26 deleterious(0) probably_damaging(0.96) TCGA-E1-A7YI-01 4 70359499 70359499 T A UGT2B4 Missense_Mutation p.Y261F 0.44 deleterious(0.01) probably_damaging(0.943) TCGA-E1-A7YI-01 4 96761796 96761796 C T PDHA2 Silent p.V165V 0.41 TCGA-E1-A7YI-01 5 13762997 13762997 T C DNAH5 Missense_Mutation p.D3372G 0.34 possibly_damaging(0.822) TCGA-E1-A7YI-01 5 140167778 140167778 C T PCDHA1 Missense_Mutation p.R635C 0.43 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-E1-A7YI-01 6 39828703 39828703 G A DAAM2 Splice_Site p.X57_splice 0.43 TCGA-E1-A7YI-01 6 41129082 41129082 C G TREM2 Missense_Mutation p.D104H 0.15 deleterious(0) probably_damaging(1) TCGA-E1-A7YI-01 6 41129257 41129257 C T TREM2 Silent p.G45G 0.28 TCGA-E1-A7YI-01 6 46135856 46135856 C T ENPP5 Silent p.T48T 0.42 TCGA-E1-A7YI-01 7 150718390 150718390 A G ATG9B Missense_Mutation p.L283P 0.68 deleterious(0.02) possibly_damaging(0.718) TCGA-E1-A7YI-01 7 36194133 36194133 A G EEPD1 Missense_Mutation p.Y67C 0.43 deleterious(0) probably_damaging(0.997) TCGA-E1-A7YI-01 X 101092592 101092592 A G NXF5 Silent p.C318C 0.33 TCGA-E1-A7YI-01 X 129060301 129060301 G A UTP14A Missense_Mutation p.A677T 0.04 tolerated(0.05) benign(0.013) TCGA-E1-A7YI-01 X 153453456 153453456 G A OPN1MW Missense_Mutation p.V104I 0.30 tolerated(0.93) benign(0.026) TCGA-E1-A7YI-01 X 68060348 68060348 G A EFNB1 Missense_Mutation p.E298K 0.14 deleterious(0) probably_damaging(0.992) TCGA-E1-A7YI-01 X 76909647 76909647 T A ATRX Nonsense_Mutation p.K1420* 0.51 TCGA-E1-A7YJ-01 10 121429423 121429423 G A BAG3 Missense_Mutation p.E81K 0.62 deleterious(0) possibly_damaging(0.831) TCGA-E1-A7YJ-01 10 70509372 70509372 C T CCAR1 Nonsense_Mutation p.R350* 0.56 TCGA-E1-A7YJ-01 11 60658695 60658695 G A PRPF19 Silent p.H486H 0.37 TCGA-E1-A7YJ-01 12 130927095 130927095 A T RIMBP2 Missense_Mutation p.F251I 0.09 tolerated(0.34) benign(0.004) TCGA-E1-A7YJ-01 12 52910609 52910609 G A KRT5 Silent p.A417A 0.40 TCGA-E1-A7YJ-01 12 977319 977319 A G WNK1 Intron 0.33 TCGA-E1-A7YJ-01 14 102676161 102676162 GA - WDR20 Frame_Shift_Del p.E583Gfs*11 0.30 TCGA-E1-A7YJ-01 14 76621051 76621051 C T GPATCH2L Silent p.D115D 0.45 TCGA-E1-A7YJ-01 15 76018478 76018478 G A ODF3L1 Silent p.P103P 0.38 TCGA-E1-A7YJ-01 15 86940658 86940658 G A AGBL1 Nonsense_Mutation p.W766* 0.40 TCGA-E1-A7YJ-01 16 58545427 58545427 G A NDRG4 Missense_Mutation p.E375K 0.38 tolerated(0.08) benign(0.373) TCGA-E1-A7YJ-01 16 67318812 67318812 C T PLEKHG4 Missense_Mutation p.A630V 0.31 tolerated(0.16) benign(0.014) TCGA-E1-A7YJ-01 16 68856080 68856080 C G CDH1 Missense_Mutation p.L630V 0.38 deleterious(0.04) possibly_damaging(0.691) TCGA-E1-A7YJ-01 16 87377354 87377354 G A FBXO31 Silent p.I169I 0.39 TCGA-E1-A7YJ-01 17 36959088 36959088 C T CWC25 Missense_Mutation p.R343Q 0.35 tolerated(0.2) benign(0.012) TCGA-E1-A7YJ-01 17 39538446 39538446 G A KRT34 Missense_Mutation p.S60F 0.31 deleterious(0.04) probably_damaging(0.928) TCGA-E1-A7YJ-01 17 61613107 61613107 C T KCNH6 Silent p.Y393Y 0.40 TCGA-E1-A7YJ-01 17 7192121 7192121 T G YBX2 Missense_Mutation p.T361P 0.08 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-E1-A7YJ-01 17 76503840 76503840 G A DNAH17 Silent p.H1424H 0.50 TCGA-E1-A7YJ-01 18 61558848 61558848 T A SERPINB2 Splice_Site p.X56_splice 0.34 TCGA-E1-A7YJ-01 19 35791074 35791074 A T MAG Missense_Mutation p.N246I 0.17 deleterious(0.02) possibly_damaging(0.679) TCGA-E1-A7YJ-01 19 46915004 46915004 G A CCDC8 Missense_Mutation p.A355V 0.25 possibly_damaging(0.696) TCGA-E1-A7YJ-01 19 49934335 49934335 G A SLC17A7 Silent p.N442N 0.21 TCGA-E1-A7YJ-01 19 56190168 56190168 A G EPN1 Missense_Mutation p.M170V 0.20 deleterious(0) unknown(0) TCGA-E1-A7YJ-01 1 185985120 185985120 C T HMCN1 Missense_Mutation p.T1647M 0.29 benign(0.01) TCGA-E1-A7YJ-01 1 197313560 197313560 A C CRB1 Missense_Mutation p.S268R 0.34 deleterious(0) probably_damaging(0.918) TCGA-E1-A7YJ-01 1 23110996 23110996 C T EPHB2 Missense_Mutation p.R80C 0.46 deleterious(0.01) probably_damaging(1) TCGA-E1-A7YJ-01 1 248637154 248637154 C T OR2T3 Missense_Mutation p.T168I 0.51 deleterious(0.02) possibly_damaging(0.76) TCGA-E1-A7YJ-01 1 32713189 32713189 G A FAM167B Missense_Mutation p.R56H 0.39 tolerated(0.25) benign(0) TCGA-E1-A7YJ-01 1 57347157 57347157 C T C8A Silent p.Y168Y 0.42 TCGA-E1-A7YJ-01 20 33703560 33703560 G T EDEM2 Nonsense_Mutation p.Y471* 0.24 TCGA-E1-A7YJ-01 20 43926951 43926951 G A MATN4 Missense_Mutation p.R429W 0.42 probably_damaging(0.963) TCGA-E1-A7YJ-01 20 61444725 61444725 G A OGFR Silent p.P586P 0.14 TCGA-E1-A7YJ-01 22 23503697 23503697 G T RAB36 Silent p.G316G 0.19 TCGA-E1-A7YJ-01 22 23503765 23503765 G A RAB36 3'UTR 0.27 TCGA-E1-A7YJ-01 22 23503766 23503766 G A RAB36 3'UTR 0.31 TCGA-E1-A7YJ-01 2 109086787 109086790 CAAA - GCC2 Frame_Shift_Del p.K335Tfs*2 0.22 TCGA-E1-A7YJ-01 2 114258183 114258183 G T FOXD4L1 3'UTR 0.08 TCGA-E1-A7YJ-01 2 163030242 163030242 C G FAP Missense_Mutation p.E675D 0.38 tolerated(1) benign(0) TCGA-E1-A7YJ-01 2 179500730 179500730 G A TTN Silent p.N13856N 0.29 TCGA-E1-A7YJ-01 2 201478598 201478598 C T AOX1 Missense_Mutation p.A507V 0.45 tolerated(0.08) probably_damaging(0.966) TCGA-E1-A7YJ-01 2 219029011 219029011 G A CXCR1 Silent p.I308I 0.06 TCGA-E1-A7YJ-01 2 26700046 26700046 C T OTOF Silent p.A839A 0.53 TCGA-E1-A7YJ-01 3 180359940 180359940 C T CCDC39 Missense_Mutation p.R572Q 0.38 tolerated(0.16) possibly_damaging(0.629) TCGA-E1-A7YJ-01 4 154702729 154702729 G A SFRP2 Silent p.N254N 0.41 TCGA-E1-A7YJ-01 4 155505468 155505468 A G FGA Silent p.Y803Y 0.36 TCGA-E1-A7YJ-01 4 70709895 70709895 C T SULT1E1 Silent p.S252S 0.41 TCGA-E1-A7YJ-01 4 87696751 87696751 A T PTPN13 Missense_Mutation p.E1951V 0.38 deleterious(0) possibly_damaging(0.844) TCGA-E1-A7YJ-01 5 140712441 140712441 C T PCDHGA1 Silent p.G730G 0.36 TCGA-E1-A7YJ-01 5 23522420 23522420 G A PRDM9 Silent p.R172R 0.37 TCGA-E1-A7YJ-01 5 54586064 54586064 T C DHX29 Missense_Mutation p.I297V 0.43 deleterious(0.01) possibly_damaging(0.452) TCGA-E1-A7YJ-01 6 3140630 3140630 C T BPHL Silent p.C225C 0.36 TCGA-E1-A7YJ-01 6 47846506 47846506 C T PTCHD4 Missense_Mutation p.V692I 0.55 tolerated(0.58) probably_damaging(0.959) TCGA-E1-A7YJ-01 6 74210488 74210488 C T MTO1 3'UTR 0.41 TCGA-E1-A7YJ-01 7 30721825 30721825 C A CRHR2 Intron 0.23 TCGA-E1-A7YJ-01 7 55221710 55221710 C T EGFR Missense_Mutation p.R252C 0.07 deleterious(0.03) possibly_damaging(0.899) TCGA-E1-A7YJ-01 8 120797466 120797468 CTT - TAF2 In_Frame_Del p.E611del 0.37 TCGA-E1-A7YJ-01 9 27169602 27169602 G A TEK Silent p.S201S 0.67 TCGA-E1-A7YJ-01 9 86153116 86153116 C T FRMD3 Missense_Mutation p.G11S 0.36 tolerated_low_confidence(0.05) benign(0) TCGA-E1-A7YK-01 10 21120204 21120204 A C NEBL Missense_Mutation p.I531S 0.09 deleterious(0) probably_damaging(0.924) TCGA-E1-A7YK-01 10 7614301 7614301 C T ITIH5 Intron 0.10 TCGA-E1-A7YK-01 10 96480240 96480240 A G CYP2C18 Missense_Mutation p.S303G 0.10 deleterious(0.01) possibly_damaging(0.702) TCGA-E1-A7YK-01 12 101595939 101595939 T C SLC5A8 Intron 0.19 TCGA-E1-A7YK-01 12 49298070 49298070 C T CCDC65 5'UTR 0.11 TCGA-E1-A7YK-01 13 101257376 101257376 C A TMTC4 Nonsense_Mutation p.G719* 0.11 TCGA-E1-A7YK-01 13 27664086 27664086 T C USP12 Missense_Mutation p.E223G 0.08 deleterious(0) probably_damaging(1) TCGA-E1-A7YK-01 13 32913927 32913927 A G BRCA2 Missense_Mutation p.E1812G 0.13 tolerated(0.09) benign(0.159) TCGA-E1-A7YK-01 13 51953635 51953638 TAAC - INTS6 Frame_Shift_Del p.S449Tfs*10 0.07 TCGA-E1-A7YK-01 14 32563045 32563045 A C ARHGAP5 Missense_Mutation p.N1057T 0.14 deleterious(0.04) benign(0.119) TCGA-E1-A7YK-01 14 36125042 36125042 C G RALGAPA1 Missense_Mutation p.A1317P 0.07 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YK-01 14 38060667 38060667 C G FOXA1 Missense_Mutation p.S441T 0.09 tolerated(0.44) benign(0.091) TCGA-E1-A7YK-01 14 65236307 65236307 C T SPTB Splice_Site p.X1979_splice 0.10 TCGA-E1-A7YK-01 15 48443720 48443720 C A MYEF2 Missense_Mutation p.R419L 0.11 deleterious(0.01) possibly_damaging(0.762) TCGA-E1-A7YK-01 15 78211343 78211343 G A RP11-114H24.7 Intron 0.34 TCGA-E1-A7YK-01 15 89392715 89392715 A G ACAN Silent p.E593E 0.27 TCGA-E1-A7YK-01 16 20638625 20638625 T C ACSM1 Missense_Mutation p.K438R 0.12 tolerated(0.18) possibly_damaging(0.72) TCGA-E1-A7YK-01 16 21147795 21147795 T A DNAH3 Missense_Mutation p.M246L 0.10 tolerated(0.63) benign(0.062) TCGA-E1-A7YK-01 17 73738764 73738764 G T ITGB4 Missense_Mutation p.V962L 0.11 tolerated(0.07) benign(0.029) TCGA-E1-A7YK-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.69 deleterious(0) probably_damaging(0.998) TCGA-E1-A7YK-01 17 77075619 77075619 G T ENGASE Missense_Mutation p.W155C 0.27 deleterious(0) probably_damaging(1) TCGA-E1-A7YK-01 18 70526300 70526300 C A NETO1 Missense_Mutation p.R77I 0.15 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YK-01 19 16973733 16973733 C T SIN3B Silent p.D435D 0.16 TCGA-E1-A7YK-01 19 33687643 33687643 C G LRP3 Missense_Mutation p.I27M 0.16 deleterious(0.02) benign(0.023) TCGA-E1-A7YK-01 19 37314666 37314666 T G ZNF790 Silent p.V12V 0.06 TCGA-E1-A7YK-01 19 38990562 38990562 C T RYR1 Missense_Mutation p.P2410L 0.16 benign(0.046) TCGA-E1-A7YK-01 19 41727878 41727878 C T AXL Missense_Mutation p.P168L 0.33 deleterious(0) probably_damaging(1) TCGA-E1-A7YK-01 19 57868714 57868714 C A ZNF304 Missense_Mutation p.H493N 0.08 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YK-01 1 111674063 111674063 C T DRAM2 Silent p.P38P 0.24 TCGA-E1-A7YK-01 1 115398065 115398065 T C SYCP1 5'UTR 0.13 TCGA-E1-A7YK-01 1 152325478 152325478 C T FLG2 Missense_Mutation p.R1595Q 0.35 benign(0.07) TCGA-E1-A7YK-01 1 153330884 153330884 G A S100A9 Missense_Mutation p.R42Q 0.29 tolerated(0.62) benign(0.001) TCGA-E1-A7YK-01 1 215259857 215259857 A G KCNK2 Missense_Mutation p.I65V 0.07 tolerated(0.32) benign(0.015) TCGA-E1-A7YK-01 1 24664502 24664502 C T GRHL3 Silent p.F287F 0.09 TCGA-E1-A7YK-01 1 247712478 247712478 G A GCSAML 5'UTR 0.08 TCGA-E1-A7YK-01 1 52891127 52891127 A G ZCCHC11 Silent p.R1588R 0.13 TCGA-E1-A7YK-01 20 2473382 2473382 T G ZNF343 Missense_Mutation p.E89D 0.11 tolerated(0.25) benign(0.091) TCGA-E1-A7YK-01 20 29956450 29956450 G C DEFB118 5'UTR 0.26 TCGA-E1-A7YK-01 2 102988461 102988461 C G IL18R1 Missense_Mutation p.H117Q 0.08 tolerated(0.2) benign(0.01) TCGA-E1-A7YK-01 2 112638298 112638298 C G ANAPC1 Missense_Mutation p.L35F 0.14 tolerated(0.73) benign(0.004) TCGA-E1-A7YK-01 2 145147217 145147217 C G ZEB2 Missense_Mutation p.G1149A 0.09 tolerated_low_confidence(0.85) benign(0.015) TCGA-E1-A7YK-01 2 170068530 170068530 A G LRP2 Silent p.F2076F 0.34 TCGA-E1-A7YK-01 2 179466139 179466139 C G TTN Missense_Mutation p.V18529L 0.19 TCGA-E1-A7YK-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7YK-01 2 74087264 74087264 C T STAMBP Missense_Mutation p.P402S 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-E1-A7YK-01 2 9000752 9000752 G A MBOAT2 Missense_Mutation p.T443M 0.08 tolerated(0.19) benign(0.001) TCGA-E1-A7YK-01 3 24169196 24169196 A C THRB Missense_Mutation p.M313R 0.30 deleterious(0) probably_damaging(0.959) TCGA-E1-A7YK-01 3 45132715 45132715 C A CDCP1 Missense_Mutation p.G648V 0.13 deleterious(0.01) probably_damaging(0.929) TCGA-E1-A7YK-01 3 47125722 47125722 G A SETD2 Missense_Mutation p.R1850C 0.09 deleterious(0) probably_damaging(0.998) TCGA-E1-A7YK-01 3 5024544 5024544 G A BHLHE40 Missense_Mutation p.E136K 0.11 tolerated(0.08) benign(0.012) TCGA-E1-A7YK-01 3 52109877 52109877 C T POC1A 3'UTR 0.10 TCGA-E1-A7YK-01 4 40434728 40434728 G A RBM47 Silent p.A494A 0.06 TCGA-E1-A7YK-01 4 44684369 44684369 G C GUF1 Missense_Mutation p.V176L 0.22 tolerated(0.99) benign(0.415) TCGA-E1-A7YK-01 4 55962466 55962466 G C KDR Silent p.L886L 0.12 TCGA-E1-A7YK-01 5 56777528 56777528 C T ACTBL2 Missense_Mutation p.R336Q 0.08 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-E1-A7YK-01 6 109827629 109827629 C G AK9 Missense_Mutation p.D1584H 0.07 deleterious(0) probably_damaging(0.997) TCGA-E1-A7YK-01 6 25770634 25770634 A C SLC17A4 Missense_Mutation p.Y185S 0.08 deleterious(0.01) probably_damaging(0.966) TCGA-E1-A7YK-01 6 28540057 28540057 A G SCAND3 Silent p.N1203N 0.18 TCGA-E1-A7YK-01 6 29274971 29274971 A G OR14J1 Missense_Mutation p.K169E 0.13 tolerated(0.32) benign(0.001) TCGA-E1-A7YK-01 6 31901509 31901509 C T CFB Missense_Mutation p.R127W 0.11 deleterious(0) possibly_damaging(0.476) TCGA-E1-A7YK-01 6 32087599 32087599 A G ATF6B Splice_Site p.X322_splice 0.18 TCGA-E1-A7YK-01 6 70098813 70098813 A G BAI3 3'UTR 0.17 TCGA-E1-A7YK-01 7 141767161 141767161 C T MGAM Intron 0.18 TCGA-E1-A7YK-01 7 2559863 2559863 A G LFNG Missense_Mutation p.K123R 0.09 tolerated(0.74) benign(0.029) TCGA-E1-A7YK-01 8 144457813 144457813 C T RHPN1 Missense_Mutation p.R51W 0.19 deleterious(0) probably_damaging(1) TCGA-E1-A7YK-01 8 21960479 21960479 C G FAM160B2 3'UTR 0.20 TCGA-E1-A7YK-01 9 117379468 117379468 G A C9orf91 5'UTR 0.16 TCGA-E1-A7YK-01 9 73235249 73235249 T C TRPM3 Silent p.T612T 0.09 TCGA-E1-A7YK-01 X 134156373 134156373 C T FAM127C Silent p.R39R 0.46 TCGA-E1-A7YK-01 X 34148669 34148669 C T FAM47A Missense_Mutation p.R576Q 0.17 tolerated(0.69) benign(0.005) TCGA-E1-A7YK-01 X 76889115 76889115 A G ATRX Missense_Mutation p.L1632S 0.37 probably_damaging(1) TCGA-E1-A7YK-01 X 76889175 76889175 A G ATRX Missense_Mutation p.L1612P 0.31 probably_damaging(1) TCGA-E1-A7YL-01 10 22022944 22022944 C T MLLT10 Missense_Mutation p.A915V 0.54 deleterious(0.01) probably_damaging(0.96) TCGA-E1-A7YL-01 10 50669556 50669556 G A ERCC6 Silent p.A1275A 0.38 TCGA-E1-A7YL-01 10 96824643 96824643 G A CYP2C8 Nonsense_Mutation p.R186* 0.55 TCGA-E1-A7YL-01 11 129996638 129996638 C T APLP2 Silent p.F378F 0.06 TCGA-E1-A7YL-01 11 56258392 56258392 G A OR5M8 Missense_Mutation p.A152V 0.22 deleterious(0.03) benign(0.009) TCGA-E1-A7YL-01 11 70331643 70331643 C T SHANK2 Silent p.P1586P 0.52 TCGA-E1-A7YL-01 11 77961363 77961363 G A GAB2 Nonsense_Mutation p.R154* 0.38 TCGA-E1-A7YL-01 12 125900178 125900178 C T TMEM132B Missense_Mutation p.S349L 0.29 deleterious(0.02) benign(0.013) TCGA-E1-A7YL-01 12 128899817 128899817 C T TMEM132C Missense_Mutation p.T209M 0.21 deleterious(0.03) benign(0.099) TCGA-E1-A7YL-01 12 81101560 81101560 C A MYF6 Missense_Mutation p.T21N 0.31 tolerated(0.31) benign(0.058) TCGA-E1-A7YL-01 13 80910949 80910952 TGTT - SPRY2 Frame_Shift_Del p.N297Qfs*57 0.37 TCGA-E1-A7YL-01 15 33260987 33260987 C T FMN1 Missense_Mutation p.R749Q 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-E1-A7YL-01 15 34647757 34647757 C T NUTM1 Silent p.G488G 0.52 TCGA-E1-A7YL-01 15 78301401 78301401 C T TBC1D2B Missense_Mutation p.V776I 0.33 tolerated(0.07) benign(0.221) TCGA-E1-A7YL-01 15 89398503 89398503 C A ACAN Missense_Mutation p.S896Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-E1-A7YL-01 16 48201459 48201459 C T ABCC11 Missense_Mutation p.R1335H 0.35 deleterious(0.01) possibly_damaging(0.717) TCGA-E1-A7YL-01 16 80718705 80718705 G T CDYL2 Missense_Mutation p.P116T 0.33 tolerated(0.56) benign(0.047) TCGA-E1-A7YL-01 17 10312737 10312737 C A MYH8 Missense_Mutation p.A586S 0.27 deleterious(0.02) possibly_damaging(0.473) TCGA-E1-A7YL-01 17 16593777 16593777 C T CCDC144A Silent p.Y21Y 0.33 TCGA-E1-A7YL-01 17 42390486 42390486 G A RUNDC3A Missense_Mutation p.G80S 0.16 deleterious(0) probably_damaging(0.94) TCGA-E1-A7YL-01 17 45821893 45821893 C T TBX21 Missense_Mutation p.R325W 0.30 deleterious(0) probably_damaging(0.997) TCGA-E1-A7YL-01 17 47696430 47696430 C G SPOP Missense_Mutation p.W131C 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-E1-A7YL-01 17 61566030 61566030 C T ACE Missense_Mutation p.T776M 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-E1-A7YL-01 17 7578236 7578236 A G TP53 Missense_Mutation p.Y205H 0.33 deleterious(0.01) benign(0.387) TCGA-E1-A7YL-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.43 deleterious(0) probably_damaging(1) TCGA-E1-A7YL-01 19 42730132 42730132 G A ZNF526 Missense_Mutation p.R526H 0.28 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YL-01 19 54974077 54974077 C A LENG9 Silent p.L233L 0.24 TCGA-E1-A7YL-01 19 56369885 56369885 G A NLRP4 Missense_Mutation p.V376I 0.16 tolerated(1) benign(0) TCGA-E1-A7YL-01 19 58352203 58352203 C G ZNF587B Intron 0.16 TCGA-E1-A7YL-01 19 58353043 58353043 C G ZNF587B Missense_Mutation p.S334C 0.24 tolerated(0.09) benign(0.137) TCGA-E1-A7YL-01 19 58353210 58353210 T A ZNF587B Intron 0.28 TCGA-E1-A7YL-01 19 58353211 58353211 C T ZNF587B Intron 0.28 TCGA-E1-A7YL-01 19 58597628 58597628 G C ZSCAN18 Missense_Mutation p.Q307E 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-E1-A7YL-01 19 8808926 8808926 G A ACTL9 Silent p.A42A 0.29 TCGA-E1-A7YL-01 1 114380493 114380493 C T PTPN22 Missense_Mutation p.R510H 0.36 tolerated(0.54) benign(0.221) TCGA-E1-A7YL-01 1 150266802 150266802 A C MRPS21 Missense_Mutation p.K6Q 0.36 possibly_damaging(0.86) TCGA-E1-A7YL-01 1 207245685 207245685 G C PFKFB2 Missense_Mutation p.R496P 0.05 benign(0) TCGA-E1-A7YL-01 1 248458221 248458221 G A OR2T12 Silent p.L220L 0.36 TCGA-E1-A7YL-01 1 40315879 40315879 A G TRIT1 Silent p.R205R 0.35 TCGA-E1-A7YL-01 1 48764519 48764519 A G SPATA6 Missense_Mutation p.Y445H 0.27 deleterious(0.02) possibly_damaging(0.643) TCGA-E1-A7YL-01 1 48764545 48764545 C G SPATA6 Missense_Mutation p.G436A 0.31 tolerated(1) probably_damaging(0.996) TCGA-E1-A7YL-01 1 52258075 52258075 C G NRD1 Missense_Mutation p.E1001Q 0.37 tolerated(0.24) possibly_damaging(0.574) TCGA-E1-A7YL-01 1 52260509 52260509 C A NRD1 Silent p.L942L 0.23 TCGA-E1-A7YL-01 20 16485072 16485072 C T KIF16B Missense_Mutation p.R374H 0.12 deleterious(0) probably_damaging(1) TCGA-E1-A7YL-01 20 54824345 54824345 C T MC3R Missense_Mutation p.A149V 0.30 deleterious(0) probably_damaging(1) TCGA-E1-A7YL-01 21 35144467 35144467 G A ITSN1 Missense_Mutation p.R382H 0.31 deleterious(0) unknown(0) TCGA-E1-A7YL-01 21 47660915 47660915 A G MCM3AP Missense_Mutation p.F1815L 0.04 tolerated(0.67) benign(0) TCGA-E1-A7YL-01 2 150327368 150327368 C T LYPD6 3'UTR 0.30 TCGA-E1-A7YL-01 2 179591950 179591950 G T TTN Nonsense_Mutation p.Y6714* 0.28 TCGA-E1-A7YL-01 2 75113620 75113620 C T HK2 Missense_Mutation p.T680M 0.30 deleterious(0) probably_damaging(1) TCGA-E1-A7YL-01 3 10491154 10491154 C A ATP2B2 Missense_Mutation p.G25V 0.17 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YL-01 3 145796957 145796957 A C PLOD2 Missense_Mutation p.F482L 0.35 deleterious(0.01) probably_damaging(0.945) TCGA-E1-A7YL-01 3 53769491 53769491 C T CACNA1D Silent p.A924A 0.36 TCGA-E1-A7YL-01 4 103585858 103585858 C G MANBA Missense_Mutation p.R490T 0.26 deleterious(0.01) possibly_damaging(0.906) TCGA-E1-A7YL-01 4 155157357 155157360 TGAG - DCHS2 Frame_Shift_Del p.T2360Mfs*15 0.20 TCGA-E1-A7YL-01 4 55589817 55589817 C A KIT Missense_Mutation p.F433L 0.37 deleterious(0.01) possibly_damaging(0.787) TCGA-E1-A7YL-01 5 123980270 123980273 TCTC - ZNF608 Frame_Shift_Del p.E1263Rfs*3 0.40 TCGA-E1-A7YL-01 5 140763942 140763942 C T PCDHGA7 Silent p.A492A 0.24 TCGA-E1-A7YL-01 5 150901599 150901599 C G FAT2 Missense_Mutation p.V3519L 0.37 benign(0.363) TCGA-E1-A7YL-01 5 157078524 157078524 G A SOX30 Missense_Mutation p.A188V 0.33 tolerated_low_confidence(0.22) benign(0.003) TCGA-E1-A7YL-01 5 161128810 161128810 G C GABRA6 3'UTR 0.28 TCGA-E1-A7YL-01 5 55472076 55472076 C T ANKRD55 Missense_Mutation p.R72H 0.32 deleterious(0.04) probably_damaging(0.984) TCGA-E1-A7YL-01 6 25600786 25600786 C T LRRC16A Missense_Mutation p.R1122W 0.30 deleterious_low_confidence(0.03) benign(0.005) TCGA-E1-A7YL-01 7 21906265 21906265 A G DNAH11 Missense_Mutation p.M3899V 0.28 benign(0.031) TCGA-E1-A7YL-01 8 100520058 100520058 C G VPS13B Missense_Mutation p.D1406E 0.28 tolerated(0.82) benign(0.001) TCGA-E1-A7YL-01 8 105367371 105367371 G A DCSTAMP Silent p.P432P 0.14 TCGA-E1-A7YL-01 8 130789733 130789733 C T GSDMC Missense_Mutation p.R34H 0.43 tolerated(0.38) benign(0.061) TCGA-E1-A7YL-01 8 24197031 24197031 G A ADAM28 Silent p.K540K 0.29 TCGA-E1-A7YL-01 8 27779582 27779582 G A SCARA5 Missense_Mutation p.A141V 0.44 tolerated(1) benign(0.085) TCGA-E1-A7YL-01 9 130648958 130648960 GGT - ST6GALNAC6 In_Frame_Del p.H307del 0.31 TCGA-E1-A7YM-01 10 95082849 95082849 G A MYOF Silent p.D1814D 0.27 TCGA-E1-A7YM-01 11 1081707 1081707 G A MUC2 Silent p.L545L 0.32 TCGA-E1-A7YM-01 11 4703777 4703777 G A OR51E2 Silent p.H55H 0.12 TCGA-E1-A7YM-01 11 50003756 50003756 C T OR4C12 Silent p.G94G 0.13 TCGA-E1-A7YM-01 12 131466566 131466566 C T GPR133 Missense_Mutation p.R150W 0.24 deleterious(0) probably_damaging(0.993) TCGA-E1-A7YM-01 12 5155075 5155075 G A KCNA5 Missense_Mutation p.V588I 0.30 tolerated_low_confidence(0.41) benign(0) TCGA-E1-A7YM-01 13 113481174 113481174 A G ATP11A Missense_Mutation p.N397S 0.23 deleterious(0) probably_damaging(0.987) TCGA-E1-A7YM-01 13 33638052 33638052 C T KL Missense_Mutation p.P923L 0.24 deleterious(0.02) possibly_damaging(0.693) TCGA-E1-A7YM-01 13 48941638 48941641 TCTT - RB1 Frame_Shift_Del p.S318Nfs*13 0.16 TCGA-E1-A7YM-01 13 95858796 95858796 C T ABCC4 Missense_Mutation p.R384Q 0.26 tolerated(0.42) benign(0.006) TCGA-E1-A7YM-01 14 74665655 74665655 A G LIN52 Missense_Mutation p.N109S 0.42 tolerated(0.07) benign(0.029) TCGA-E1-A7YM-01 15 52074950 52074950 A G TMOD2 Silent p.A219A 0.23 TCGA-E1-A7YM-01 15 72338854 72338854 T C MYO9A Silent p.T17T 0.13 TCGA-E1-A7YM-01 16 18863422 18863424 AAG - SMG1 In_Frame_Del p.L1673del 0.32 TCGA-E1-A7YM-01 16 705313 705313 G A WDR90 Silent p.A521A 0.24 TCGA-E1-A7YM-01 17 11840726 11840726 G A DNAH9 Missense_Mutation p.A4183T 0.21 probably_damaging(0.939) TCGA-E1-A7YM-01 17 3324353 3324353 C T OR3A3 Silent p.N164N 0.08 TCGA-E1-A7YM-01 17 47119680 47119680 G A IGF2BP1 Missense_Mutation p.E340K 0.22 deleterious(0) probably_damaging(0.985) TCGA-E1-A7YM-01 19 35791251 35791251 G A MAG Missense_Mutation p.C305Y 0.31 deleterious(0.01) possibly_damaging(0.837) TCGA-E1-A7YM-01 19 40408807 40408807 G A FCGBP Silent p.N1344N 0.30 TCGA-E1-A7YM-01 1 31897680 31897680 G A SERINC2 Missense_Mutation p.V127M 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-E1-A7YM-01 2 102965586 102965586 T C IL1RL1 Missense_Mutation p.S389P 0.26 tolerated(0.17) benign(0.329) TCGA-E1-A7YM-01 2 17698258 17698258 C T RAD51AP2 Silent p.T475T 0.21 TCGA-E1-A7YM-01 2 207009618 207009618 G T NDUFS1 Silent p.T304T 0.21 TCGA-E1-A7YM-01 2 233245422 233245422 C T ALPP Missense_Mutation p.R319C 0.14 deleterious(0.01) benign(0.089) TCGA-E1-A7YM-01 2 233750036 233750036 G A NGEF Missense_Mutation p.T464M 0.25 tolerated(0.26) probably_damaging(0.999) TCGA-E1-A7YM-01 2 37041349 37041349 G A VIT Missense_Mutation p.V643I 0.30 tolerated(0.72) benign(0.032) TCGA-E1-A7YM-01 2 69093101 69093101 G A BMP10 Nonsense_Mutation p.R313* 0.20 TCGA-E1-A7YM-01 3 122133366 122133366 C T WDR5B 3'UTR 0.18 TCGA-E1-A7YM-01 3 30029663 30029663 G A RBMS3 Silent p.G376G 0.19 TCGA-E1-A7YM-01 3 47144880 47144880 G A SETD2 Missense_Mutation p.R1625C 0.10 deleterious(0) probably_damaging(0.961) TCGA-E1-A7YM-01 3 53783386 53783386 A G CACNA1D Missense_Mutation p.I1156V 0.33 deleterious(0) probably_damaging(0.976) TCGA-E1-A7YM-01 4 71201726 71201726 G A CABS1 Missense_Mutation p.V324I 0.26 tolerated(0.91) benign(0.004) TCGA-E1-A7YM-01 5 118484571 118484571 A G DMXL1 Missense_Mutation p.I1017V 0.19 tolerated(0.37) benign(0) TCGA-E1-A7YM-01 5 140215668 140215668 C T PCDHA7 Missense_Mutation p.A567V 0.24 tolerated_low_confidence(0.09) benign(0.021) TCGA-E1-A7YM-01 5 140237073 140237073 C T PCDHA10 Silent p.D480D 0.21 TCGA-E1-A7YM-01 5 169484642 169484642 G A DOCK2 Missense_Mutation p.R1480H 0.29 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YM-01 5 6337339 6337339 C A CTD-2324F15.2 RNA 0.22 TCGA-E1-A7YM-01 6 116879357 116879357 A G FAM26D Missense_Mutation p.I167V 0.13 tolerated(0.07) benign(0.221) TCGA-E1-A7YM-01 6 26393183 26393183 C T BTN2A2 Silent p.H520H 0.21 TCGA-E1-A7YM-01 6 28543532 28543532 C G SCAND3 Missense_Mutation p.S317T 0.23 deleterious_low_confidence(0.04) benign(0.101) TCGA-E1-A7YM-01 6 28963224 28963224 T G ZNF311 Silent p.R519R 0.10 TCGA-E1-A7YM-01 6 31475003 31475003 G A MICB Missense_Mutation p.R273H 0.29 deleterious(0.03) possibly_damaging(0.478) TCGA-E1-A7YM-01 6 89888740 89888740 G A GABRR1 Silent p.L397L 0.22 TCGA-E1-A7YM-01 6 90039674 90039674 G A UBE2J1 Silent p.Y227Y 0.21 TCGA-E1-A7YM-01 7 33407399 33407399 G A BBS9 Missense_Mutation p.D572N 0.14 tolerated(0.09) possibly_damaging(0.71) TCGA-E1-A7YM-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.18 deleterious(0.02) probably_damaging(0.974) TCGA-E1-A7YM-01 8 30704051 30704051 C T TEX15 Missense_Mutation p.G828D 0.25 tolerated(0.1) possibly_damaging(0.847) TCGA-E1-A7YM-01 9 124929186 124929186 G A MORN5 Missense_Mutation p.A63T 0.31 tolerated(0.3) benign(0.371) TCGA-E1-A7YM-01 9 136508598 136508598 G A DBH Missense_Mutation p.A270T 0.23 tolerated(0.17) benign(0.021) TCGA-E1-A7YM-01 9 325674 325674 C T DOCK8 Silent p.F277F 0.15 TCGA-E1-A7YM-01 X 76711876 76711876 G A FGF16 Missense_Mutation p.V72M 0.50 probably_damaging(0.964) TCGA-E1-A7YN-01 10 26939502 26939502 C T LINC00202-2 RNA 0.17 TCGA-E1-A7YN-01 10 71008236 71008236 G A HKDC1 Missense_Mutation p.R441H 0.25 deleterious(0.04) benign(0.34) TCGA-E1-A7YN-01 11 103908727 103908727 C T DDI1 Nonsense_Mutation p.R393* 0.21 TCGA-E1-A7YN-01 11 26584679 26584679 G A MUC15 Silent p.D303D 0.16 TCGA-E1-A7YN-01 11 48266656 48266656 A T OR4X2 Translation_Start_Site p.M1? 0.08 deleterious(0.01) benign(0.004) TCGA-E1-A7YN-01 11 4842972 4842972 C T OR51F2 Silent p.H119H 0.12 TCGA-E1-A7YN-01 11 59949075 59949075 G A MS4A6A Silent p.H70H 0.22 TCGA-E1-A7YN-01 11 60152586 60152586 T G MS4A7 Missense_Mutation p.L58W 0.12 deleterious(0) possibly_damaging(0.623) TCGA-E1-A7YN-01 11 65486590 65486590 C T KAT5 Missense_Mutation p.R527W 0.20 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YN-01 11 65788325 65788325 C T CATSPER1 Silent p.T628T 0.18 TCGA-E1-A7YN-01 12 10005934 10005934 C T CLEC2B Missense_Mutation p.E139K 0.17 deleterious(0.01) benign(0.274) TCGA-E1-A7YN-01 12 21355502 21355502 G A SLCO1B1 Missense_Mutation p.V405I 0.31 tolerated(0.7) benign(0.012) TCGA-E1-A7YN-01 12 5708776 5708776 G A ANO2 Nonsense_Mutation p.R703* 0.15 TCGA-E1-A7YN-01 12 57422571 57422571 C A MYO1A Missense_Mutation p.G1034W 0.11 deleterious(0) probably_damaging(0.945) TCGA-E1-A7YN-01 12 7023347 7023347 G A LRRC23 3'UTR 0.20 TCGA-E1-A7YN-01 13 102375254 102375254 G A FGF14 Missense_Mutation p.T229M 0.11 tolerated(0.07) possibly_damaging(0.888) TCGA-E1-A7YN-01 13 103698435 103698435 C T SLC10A2 3'UTR 0.13 TCGA-E1-A7YN-01 15 42166142 42166142 G A SPTBN5 Silent p.I1597I 0.11 TCGA-E1-A7YN-01 15 69238119 69238119 C T SPESP1 Silent p.D82D 0.25 TCGA-E1-A7YN-01 15 74425299 74425299 C T ISLR2 Silent p.R68R 0.07 TCGA-E1-A7YN-01 15 91436545 91436545 G A FES Missense_Mutation p.R649H 0.16 deleterious(0) possibly_damaging(0.898) TCGA-E1-A7YN-01 16 16162084 16162084 C T ABCC1 Silent p.F583F 0.25 TCGA-E1-A7YN-01 16 48256601 48256601 G A ABCC11 Missense_Mutation p.R229C 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-E1-A7YN-01 16 7645562 7645562 C T RBFOX1 Silent p.F180F 0.16 TCGA-E1-A7YN-01 16 89348857 89348857 G A ANKRD11 Nonsense_Mutation p.R1365* 0.22 TCGA-E1-A7YN-01 17 11573026 11573026 C T DNAH9 Nonsense_Mutation p.R1090* 0.13 TCGA-E1-A7YN-01 17 6380417 6380417 C T PITPNM3 Silent p.P339P 0.20 TCGA-E1-A7YN-01 17 72926410 72926410 T A OTOP2 Missense_Mutation p.L227H 0.18 tolerated(0.11) possibly_damaging(0.617) TCGA-E1-A7YN-01 17 7646393 7646393 C T DNAH2 Missense_Mutation p.R613W 0.10 probably_damaging(0.953) TCGA-E1-A7YN-01 17 9837515 9837515 C T GAS7 Missense_Mutation p.E285K 0.21 deleterious(0.05) probably_damaging(0.997) TCGA-E1-A7YN-01 18 28913648 28913648 G A DSG1 Missense_Mutation p.D261N 0.17 deleterious(0) probably_damaging(1) TCGA-E1-A7YN-01 19 44891689 44891689 C T ZNF285 Missense_Mutation p.A240T 0.16 tolerated(0.13) benign(0.038) TCGA-E1-A7YN-01 19 46002331 46002331 C A PPM1N Silent p.R201R 0.33 TCGA-E1-A7YN-01 19 48339541 48339541 C T CRX Missense_Mutation p.R48W 0.14 deleterious(0.03) probably_damaging(1) TCGA-E1-A7YN-01 19 50548736 50548736 C T ZNF473 Missense_Mutation p.R346C 0.16 tolerated(0.12) possibly_damaging(0.876) TCGA-E1-A7YN-01 1 158622273 158622273 A T SPTA1 Missense_Mutation p.F1120Y 0.11 deleterious(0.02) probably_damaging(0.92) TCGA-E1-A7YN-01 1 158815468 158815468 C T MNDA Missense_Mutation p.A221V 0.15 deleterious(0.02) benign(0.429) TCGA-E1-A7YN-01 1 1849422 1849422 G C TMEM52 Missense_Mutation p.P177A 0.08 tolerated(0.31) benign(0.338) TCGA-E1-A7YN-01 1 204438640 204438640 G A PIK3C2B Silent p.S97S 0.03 TCGA-E1-A7YN-01 1 204438785 204438785 G A PIK3C2B Missense_Mutation p.A49V 0.03 tolerated_low_confidence(0.11) benign(0.001) TCGA-E1-A7YN-01 1 204438817 204438817 G A PIK3C2B Silent p.S38S 0.03 TCGA-E1-A7YN-01 1 248224375 248224375 A T OR2L3 Missense_Mutation p.Y131F 0.16 deleterious(0) probably_damaging(0.973) TCGA-E1-A7YN-01 20 30585186 30585186 C T XKR7 Missense_Mutation p.P556S 0.22 deleterious(0.01) possibly_damaging(0.692) TCGA-E1-A7YN-01 2 170050323 170050323 G A LRP2 Silent p.D2926D 0.14 TCGA-E1-A7YN-01 2 179604671 179604671 A T TTN Missense_Mutation p.V4430E 0.16 TCGA-E1-A7YN-01 2 241468646 241468646 G A ANKMY1 Missense_Mutation p.T165M 0.18 tolerated(0.06) benign(0.181) TCGA-E1-A7YN-01 3 121264733 121264733 C A POLQ 5'UTR 0.08 TCGA-E1-A7YN-01 3 2787238 2787238 G T CNTN4 Missense_Mutation p.G72V 0.22 tolerated(0.14) benign(0.22) TCGA-E1-A7YN-01 4 186339907 186339907 C A UFSP2 Missense_Mutation p.A34S 0.15 tolerated(0.14) benign(0.024) TCGA-E1-A7YN-01 4 79437135 79437135 G A FRAS1 Missense_Mutation p.V3453I 0.15 benign(0.339) TCGA-E1-A7YN-01 4 81967316 81967316 C T BMP3 Silent p.A247A 0.18 TCGA-E1-A7YN-01 4 96163694 96163694 A G UNC5C Missense_Mutation p.C332R 0.19 deleterious(0) probably_damaging(1) TCGA-E1-A7YN-01 5 134210146 134210146 C T TXNDC15 Missense_Mutation p.P10L 0.14 tolerated_low_confidence(0.41) benign(0) TCGA-E1-A7YN-01 5 145379666 145379666 G A SH3RF2 Missense_Mutation p.G142S 0.18 deleterious(0.04) possibly_damaging(0.552) TCGA-E1-A7YN-01 5 149636365 149636365 A G CAMK2A Missense_Mutation p.I101T 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-E1-A7YN-01 6 108645100 108645100 G A LACE1 Missense_Mutation p.V71I 0.15 tolerated(0.26) benign(0.001) TCGA-E1-A7YN-01 6 133789766 133789766 G A EYA4 Silent p.T289T 0.20 TCGA-E1-A7YN-01 6 136594291 136594291 G A BCLAF1 Silent p.N629N 0.06 TCGA-E1-A7YN-01 6 28539970 28539970 G A SCAND3 Silent p.T1232T 0.15 TCGA-E1-A7YN-01 6 33145197 33145197 C T COL11A2 Missense_Mutation p.G569R 0.15 probably_damaging(0.979) TCGA-E1-A7YN-01 6 47681909 47681909 G A GPR115 Missense_Mutation p.V310M 0.13 tolerated(0.18) benign(0.014) TCGA-E1-A7YN-01 6 56362694 56362695 - T DST Frame_Shift_Ins p.T4062Nfs*23 0.14 TCGA-E1-A7YN-01 6 76599795 76599795 C G MYO6 Missense_Mutation p.Q894E 0.07 tolerated(1) unknown(0) TCGA-E1-A7YN-01 7 107603490 107603490 G A LAMB1 Missense_Mutation p.R573W 0.12 deleterious(0) possibly_damaging(0.907) TCGA-E1-A7YN-01 7 142247149 142247149 G A TRBV7-3 Missense_Mutation p.R103W 0.13 TCGA-E1-A7YN-01 7 142606688 142606688 G A TRPV5 Silent p.C621C 0.17 TCGA-E1-A7YN-01 7 149152540 149152540 C T ZNF777 Missense_Mutation p.V192I 0.16 tolerated(0.45) benign(0.032) TCGA-E1-A7YN-01 7 150646032 150646032 C T KCNH2 Missense_Mutation p.R835Q 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-E1-A7YN-01 7 16445756 16445756 T A ISPD Missense_Mutation p.H155L 0.13 deleterious(0) probably_damaging(1) TCGA-E1-A7YN-01 7 29976211 29976211 G A SCRN1 Missense_Mutation p.P309L 0.13 deleterious(0.02) probably_damaging(0.956) TCGA-E1-A7YN-01 7 87183144 87183144 G T ABCB1 Missense_Mutation p.A311D 0.15 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YN-01 7 99367747 99367747 C A CYP3A4 Nonsense_Mutation p.E144* 0.17 TCGA-E1-A7YN-01 7 99564612 99564612 C T AZGP1 3'UTR 0.14 TCGA-E1-A7YN-01 8 24771450 24771450 G C NEFM Silent p.V48V 0.17 TCGA-E1-A7YN-01 8 38187124 38187124 G A WHSC1L1 Silent p.S451S 0.17 TCGA-E1-A7YN-01 9 27217702 27217702 G A TEK Missense_Mutation p.R1003H 0.22 deleterious(0) probably_damaging(1) TCGA-E1-A7YN-01 9 32632119 32632119 C T TAF1L Silent p.L1153L 0.14 TCGA-E1-A7YN-01 X 104984675 104984675 C T IL1RAPL2 Missense_Mutation p.R347C 0.14 deleterious(0) possibly_damaging(0.786) TCGA-E1-A7YN-01 X 110644519 110644519 T - DCX Frame_Shift_Del p.K216Rfs*16 0.12 TCGA-E1-A7YN-01 X 152226591 152226591 A T PNMA3 Silent p.R393R 0.11 TCGA-E1-A7YN-01 X 153421855 153421855 C G OPN1LW Nonsense_Mutation p.Y277* 0.20 TCGA-E1-A7YN-01 X 57619831 57619831 C T ZXDB Silent p.G450G 0.16 TCGA-E1-A7YO-01 10 103825741 103825741 C T HPS6 Silent p.P170P 0.21 TCGA-E1-A7YO-01 10 73521533 73521533 G A C10orf54 Silent p.H111H 0.53 TCGA-E1-A7YO-01 11 129725675 129725675 C T TMEM45B Missense_Mutation p.A153V 0.47 tolerated(0.14) benign(0.367) TCGA-E1-A7YO-01 12 42711593 42711593 T G ZCRB1 Missense_Mutation p.K74T 0.05 tolerated(0.38) benign(0.026) TCGA-E1-A7YO-01 12 46602870 46602870 T C SLC38A1 Missense_Mutation p.I119V 0.14 tolerated(0.58) probably_damaging(0.981) TCGA-E1-A7YO-01 12 63543965 63543965 T C AVPR1A Missense_Mutation p.T218A 0.37 deleterious(0) probably_damaging(0.994) TCGA-E1-A7YO-01 14 106668030 106668030 C T IGHV3-20 Missense_Mutation p.E2K 0.20 tolerated_low_confidence(0.15) benign(0.026) TCGA-E1-A7YO-01 14 23393534 23393534 C T PRMT5 Missense_Mutation p.A382T 0.23 tolerated(0.43) probably_damaging(0.998) TCGA-E1-A7YO-01 14 36987036 36987036 G A NKX2-1 Missense_Mutation p.A218V 0.22 deleterious(0) probably_damaging(0.994) TCGA-E1-A7YO-01 15 41801323 41801323 G A LTK Silent p.G334G 0.23 TCGA-E1-A7YO-01 15 74630911 74630911 C T CYP11A1 Splice_Site p.X478_splice 0.44 TCGA-E1-A7YO-01 19 1049302 1049302 C T ABCA7 Silent p.G806G 0.37 TCGA-E1-A7YO-01 19 12991928 12991928 C G DNASE2 Missense_Mutation p.G42A 0.10 tolerated(0.13) possibly_damaging(0.507) TCGA-E1-A7YO-01 19 42794819 42794820 - C CIC Frame_Shift_Ins p.N636Kfs*54 0.23 TCGA-E1-A7YO-01 19 43763054 43763054 G A PSG9 Nonsense_Mutation p.R315* 0.32 TCGA-E1-A7YO-01 19 47422168 47422168 T G ARHGAP35 Missense_Mutation p.V79G 0.10 deleterious(0) benign(0.194) TCGA-E1-A7YO-01 1 152059508 152059508 T - TCHHL1 Frame_Shift_Del p.K217Rfs*31 0.29 TCGA-E1-A7YO-01 1 179959716 179959716 G C CEP350 Missense_Mutation p.K65N 0.30 possibly_damaging(0.756) TCGA-E1-A7YO-01 1 245862232 245862232 G A KIF26B Missense_Mutation p.R2024H 0.36 deleterious(0) unknown(0) TCGA-E1-A7YO-01 1 36230093 36230093 A G CLSPN Missense_Mutation p.L119S 0.37 tolerated(0.08) benign(0.05) TCGA-E1-A7YO-01 1 78430654 78430654 C T FUBP1 Splice_Site p.X213_splice 0.79 TCGA-E1-A7YO-01 22 39382395 39382395 C T APOBEC3B Missense_Mutation p.R183C 0.16 tolerated(0.2) benign(0.341) TCGA-E1-A7YO-01 2 153575515 153575515 C G ARL6IP6 Missense_Mutation p.A126G 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-E1-A7YO-01 2 179456193 179456193 C T TTN Missense_Mutation p.G20087S 0.39 TCGA-E1-A7YO-01 2 190554618 190554618 A T ANKAR Missense_Mutation p.I323F 0.21 deleterious(0.01) benign(0.355) TCGA-E1-A7YO-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7YO-01 2 242684241 242684241 G A D2HGDH Missense_Mutation p.V268M 0.54 deleterious(0.01) possibly_damaging(0.903) TCGA-E1-A7YO-01 3 27204221 27204221 G A NEK10 Missense_Mutation p.T947I 0.18 tolerated(0.56) benign(0) TCGA-E1-A7YO-01 5 43161369 43161369 T C ZNF131 Silent p.A130A 0.47 TCGA-E1-A7YO-01 6 7229727 7229727 C T RREB1 Silent p.I465I 0.17 TCGA-E1-A7YO-01 9 131588889 131588889 T G C9orf114 Missense_Mutation p.T130P 0.19 tolerated(0.25) benign(0.01) TCGA-E1-A7YO-01 9 72131193 72131193 C T APBA1 Missense_Mutation p.D312N 0.21 tolerated_low_confidence(0.29) benign(0.001) TCGA-E1-A7YO-01 X 119496054 119496054 C T ATP1B4 Missense_Mutation p.P11S 0.05 tolerated_low_confidence(0.07) benign(0.019) TCGA-E1-A7YO-01 X 53432803 53432803 G A SMC1A Missense_Mutation p.A544V 0.79 deleterious(0) probably_damaging(0.996) TCGA-E1-A7YO-01 X 57162553 57162553 C T SPIN2A Missense_Mutation p.A160T 0.33 tolerated(1) benign(0.01) TCGA-E1-A7YQ-01 10 114207166 114207166 T C VTI1A Missense_Mutation p.F12S 0.54 deleterious(0) probably_damaging(0.93) TCGA-E1-A7YQ-01 10 124009064 124009064 A G TACC2 Missense_Mutation p.N2889S 0.48 probably_damaging(0.981) TCGA-E1-A7YQ-01 11 104815486 104815486 G T CASP4 Silent p.G376G 0.20 TCGA-E1-A7YQ-01 11 30926645 30926645 G A DCDC1 Missense_Mutation p.R1391W 0.09 deleterious(0.05) possibly_damaging(0.835) TCGA-E1-A7YQ-01 12 111758084 111758084 G A CUX2 Silent p.A757A 0.18 TCGA-E1-A7YQ-01 12 113376285 113376285 C A OAS3 5'UTR 0.19 TCGA-E1-A7YQ-01 12 4479496 4479496 C T FGF23 3'UTR 0.17 TCGA-E1-A7YQ-01 12 49219447 49219447 T C CACNB3 Missense_Mutation p.S213P 0.13 tolerated(0.08) probably_damaging(0.971) TCGA-E1-A7YQ-01 12 49959390 49959390 A G MCRS1 Silent p.S83S 0.30 TCGA-E1-A7YQ-01 12 5153998 5153998 C T KCNA5 Missense_Mutation p.R229C 0.14 deleterious(0.01) possibly_damaging(0.719) TCGA-E1-A7YQ-01 12 7295599 7295599 G A CLSTN3 Missense_Mutation p.E559K 0.31 deleterious(0.03) benign(0.063) TCGA-E1-A7YQ-01 12 8377411 8377411 G C FAM90A1 Missense_Mutation p.D6E 0.15 tolerated(0.31) benign(0.218) TCGA-E1-A7YQ-01 13 114149982 114149982 C T TMCO3 Missense_Mutation p.A29V 0.44 tolerated(0.24) benign(0.035) TCGA-E1-A7YQ-01 13 73345240 73345240 G A DIS3 Missense_Mutation p.S550F 0.16 deleterious(0) probably_damaging(0.998) TCGA-E1-A7YQ-01 14 100123456 100123456 G T HHIPL1 Missense_Mutation p.G341V 0.29 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YQ-01 15 86284361 86284361 C A AKAP13 Missense_Mutation p.P2569T 0.39 deleterious(0.02) possibly_damaging(0.861) TCGA-E1-A7YQ-01 15 97328491 97328491 C T SPATA8 3'UTR 0.18 TCGA-E1-A7YQ-01 16 90032402 90032402 G T DEF8 3'UTR 0.57 TCGA-E1-A7YQ-01 16 90032403 90032403 G C DEF8 3'UTR 0.57 TCGA-E1-A7YQ-01 17 18023162 18023162 G A MYO15A Missense_Mutation p.D350N 0.09 benign(0.035) TCGA-E1-A7YQ-01 17 18692723 18692723 A G TVP23B Missense_Mutation p.N24D 0.20 tolerated(0.67) benign(0.001) TCGA-E1-A7YQ-01 17 27041478 27041478 G A RAB34 3'UTR 0.33 TCGA-E1-A7YQ-01 18 8784233 8784243 CTGGGGCTGCG - SOGA2 Frame_Shift_Del p.L375Cfs*12 0.21 TCGA-E1-A7YQ-01 19 42396888 42396888 G A ARHGEF1 Silent p.A209A 0.35 TCGA-E1-A7YQ-01 19 58549469 58549469 G A ZSCAN1 Missense_Mutation p.A89T 0.42 deleterious(0.02) benign(0.22) TCGA-E1-A7YQ-01 19 7083503 7083503 C G ZNF557 Silent p.P347P 0.35 TCGA-E1-A7YQ-01 1 169985738 169985738 C G KIFAP3 Missense_Mutation p.V350L 0.07 tolerated(0.81) benign(0.079) TCGA-E1-A7YQ-01 1 207297295 207297295 C T C4BPA Missense_Mutation p.R153C 0.09 tolerated(0.07) possibly_damaging(0.464) TCGA-E1-A7YQ-01 1 245849237 245849237 C T KIF26B Silent p.S984S 0.14 TCGA-E1-A7YQ-01 1 32157245 32157245 T G COL16A1 Splice_Site p.X420_splice 0.11 TCGA-E1-A7YQ-01 22 31018998 31018998 G A TCN2 Missense_Mutation p.V384M 0.10 deleterious(0) probably_damaging(0.994) TCGA-E1-A7YQ-01 22 32923909 32923909 C T SYN3 Silent p.P438P 0.24 TCGA-E1-A7YQ-01 2 111415208 111415208 A T BUB1 Missense_Mutation p.S511T 0.18 tolerated(0.35) probably_damaging(0.993) TCGA-E1-A7YQ-01 2 89197262 89197262 G A IGKV5-2 Missense_Mutation p.A103T 0.21 tolerated(0.24) benign(0.013) TCGA-E1-A7YQ-01 3 124748221 124748221 A G HEG1 Missense_Mutation p.M143T 0.52 tolerated_low_confidence(0.21) benign(0.026) TCGA-E1-A7YQ-01 3 52610666 52610666 G - PBRM1 Frame_Shift_Del p.I1170Sfs*23 0.32 TCGA-E1-A7YQ-01 4 110932547 110932547 C A EGF Nonsense_Mutation p.S1187* 0.09 TCGA-E1-A7YQ-01 4 77817817 77817817 C G SOWAHB Missense_Mutation p.D396H 0.33 deleterious(0) possibly_damaging(0.861) TCGA-E1-A7YQ-01 6 151789765 151789765 A G C6orf211 Silent p.G282G 0.06 TCGA-E1-A7YQ-01 6 99883525 99883532 TTATATAT - USP45 3'UTR 0.10 TCGA-E1-A7YQ-01 7 100685498 100685498 G C MUC17 Missense_Mutation p.V3601L 0.12 benign(0.001) TCGA-E1-A7YQ-01 7 55240750 55240750 G A EGFR Missense_Mutation p.G665D 0.82 deleterious(0.02) probably_damaging(0.934) TCGA-E1-A7YQ-01 9 97535396 97535399 TTTG C C9orf3 In_Frame_Del p.F304_V305delinsL 0.50 TCGA-E1-A7YQ-01 X 125299247 125299247 G A DCAF12L2 Missense_Mutation p.R221W 0.06 deleterious(0.05) benign(0.022) TCGA-E1-A7YQ-01 X 12905054 12905054 G C TLR7 Missense_Mutation p.R476T 0.27 tolerated(0.21) benign(0.027) TCGA-E1-A7YQ-01 X 17819635 17819635 G C RAI2 Missense_Mutation p.P166A 0.05 tolerated(0.2) probably_damaging(0.987) TCGA-E1-A7YQ-01 X 27998163 27998163 C G DCAF8L1 Missense_Mutation p.R430T 0.19 deleterious(0.01) benign(0.142) TCGA-E1-A7YQ-01 X 34961676 34961676 G A FAM47B Missense_Mutation p.R243H 0.13 tolerated(0.21) benign(0.439) TCGA-E1-A7YQ-01 X 47270081 47270081 C A ZNF157 Missense_Mutation p.L68I 0.15 tolerated(0.22) benign(0.03) TCGA-E1-A7YS-01 10 102258994 102258994 C G SEC31B Missense_Mutation p.D503H 0.13 tolerated(0.07) benign(0.227) TCGA-E1-A7YS-01 10 104228827 104228827 C G TMEM180 Missense_Mutation p.P14R 0.41 deleterious(0.02) possibly_damaging(0.58) TCGA-E1-A7YS-01 10 5827898 5827898 C T GDI2 Missense_Mutation p.M168I 0.53 deleterious(0.05) benign(0.165) TCGA-E1-A7YS-01 11 102743629 102743629 C T MMP12 RNA 0.36 TCGA-E1-A7YS-01 11 55062966 55062966 C T TRIM51HP RNA 0.19 TCGA-E1-A7YS-01 11 55111376 55111376 G - OR4A16 Frame_Shift_Del p.A234Pfs*35 0.18 TCGA-E1-A7YS-01 11 58190261 58190261 A G OR5B2 Silent p.I158I 0.18 TCGA-E1-A7YS-01 11 65729299 65729299 G T SART1 Silent p.T16T 0.26 TCGA-E1-A7YS-01 12 119588985 119588985 C T SRRM4 Missense_Mutation p.P414S 0.56 deleterious_low_confidence(0.02) probably_damaging(0.932) TCGA-E1-A7YS-01 12 133384808 133384808 C T GOLGA3 Missense_Mutation p.V283I 0.30 tolerated_low_confidence(0.1) benign(0.06) TCGA-E1-A7YS-01 12 13364437 13364437 G A EMP1 5'UTR 0.21 TCGA-E1-A7YS-01 12 41423022 41423025 GTAA - CNTN1 Splice_Site p.X994_splice 0.64 TCGA-E1-A7YS-01 12 70713109 70713109 T C CNOT2 Missense_Mutation p.L68P 0.30 tolerated_low_confidence(0.09) possibly_damaging(0.822) TCGA-E1-A7YS-01 14 45702022 45702022 T C MIS18BP1 Silent p.G450G 0.28 TCGA-E1-A7YS-01 14 89016730 89016730 C T PTPN21 Missense_Mutation p.R11H 0.30 deleterious(0) probably_damaging(0.998) TCGA-E1-A7YS-01 15 74964117 74964117 T A EDC3 Splice_Site p.X55_splice 0.91 TCGA-E1-A7YS-01 16 30616153 30616153 G A ZNF689 Missense_Mutation p.T312M 0.16 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YS-01 16 31766709 31766709 G A ZNF720 Intron 0.38 TCGA-E1-A7YS-01 16 56926069 56926069 G A SLC12A3 Missense_Mutation p.A815T 0.49 tolerated(0.63) benign(0.001) TCGA-E1-A7YS-01 16 66851377 66851378 GT ATATG NAE1 In_Frame_Ins p.T212delinsHI 0.49 TCGA-E1-A7YS-01 17 46655328 46655328 C T HOXB4 Silent p.P118P 0.57 TCGA-E1-A7YS-01 17 47304069 47304069 G A PHOSPHO1 5'UTR 0.21 TCGA-E1-A7YS-01 17 54933942 54933942 C T DGKE Missense_Mutation p.R390C 0.13 deleterious(0) probably_damaging(1) TCGA-E1-A7YS-01 17 61987352 61987352 C T CSHL1 Intron 0.24 TCGA-E1-A7YS-01 18 61600315 61600315 A T SERPINB10 Nonsense_Mutation p.K223* 0.62 TCGA-E1-A7YS-01 18 674170 674170 T C ENOSF1 3'UTR 0.40 TCGA-E1-A7YS-01 19 1800065 1800065 C T ATP8B3 Missense_Mutation p.R478H 0.50 deleterious(0.01) probably_damaging(1) TCGA-E1-A7YS-01 19 3028803 3028803 T - TLE2 Splice_Site p.X9_splice 0.32 TCGA-E1-A7YS-01 19 52954871 52954871 A G ZNF578 5'Flank 0.85 TCGA-E1-A7YS-01 19 55147060 55147060 G A LILRB1 Silent p.R551R 0.76 TCGA-E1-A7YS-01 1 100483315 100483315 G A SLC35A3 Silent p.S277S 0.53 TCGA-E1-A7YS-01 1 155294621 155294621 C T RUSC1 Intron 0.41 TCGA-E1-A7YS-01 1 166973530 166973530 A G MAEL Missense_Mutation p.I213V 0.29 tolerated(1) benign(0.003) TCGA-E1-A7YS-01 1 6194808 6194808 G A CHD5 Silent p.N994N 0.24 TCGA-E1-A7YS-01 1 75684273 75684273 G A SLC44A5 Silent p.C477C 0.07 TCGA-E1-A7YS-01 1 77558024 77558024 G A PIGK 3'UTR 0.90 TCGA-E1-A7YS-01 1 9780177 9780177 G T PIK3CD Missense_Mutation p.K449N 0.87 tolerated(0.5) possibly_damaging(0.694) TCGA-E1-A7YS-01 20 36768010 36768010 G A TGM2 Silent p.G382G 0.58 TCGA-E1-A7YS-01 20 51871432 51871432 G A TSHZ2 Missense_Mutation p.V479M 0.09 tolerated(0.11) benign(0.004) TCGA-E1-A7YS-01 21 30343646 30343646 T C LTN1 Missense_Mutation p.I357V 0.26 tolerated(1) benign(0.001) TCGA-E1-A7YS-01 2 11738849 11738849 G A GREB1 Silent p.K732K 0.05 TCGA-E1-A7YS-01 2 179571236 179571236 C A TTN Missense_Mutation p.D9789Y 0.17 TCGA-E1-A7YS-01 2 179611639 179611639 C T TTN Intron 0.16 TCGA-E1-A7YS-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7YS-01 2 219127452 219127452 C T GPBAR1 Missense_Mutation p.T2M 0.53 deleterious_low_confidence(0) benign(0.005) TCGA-E1-A7YS-01 2 39053719 39053719 T A DHX57 Missense_Mutation p.T918S 0.22 deleterious(0.03) possibly_damaging(0.687) TCGA-E1-A7YS-01 2 69601201 69601201 C T GFPT1 Missense_Mutation p.E18K 0.22 tolerated(0.06) possibly_damaging(0.597) TCGA-E1-A7YS-01 2 96260159 96260159 G A TRIM43 Missense_Mutation p.E130K 0.19 deleterious(0.01) possibly_damaging(0.476) TCGA-E1-A7YS-01 3 114058240 114058240 C T ZBTB20 Missense_Mutation p.R613H 0.46 deleterious(0.01) probably_damaging(0.991) TCGA-E1-A7YS-01 3 184046467 184046467 C T EIF4G1 Silent p.P1341P 0.38 TCGA-E1-A7YS-01 3 98002344 98002344 T G OR5H2 Missense_Mutation p.F205V 0.21 deleterious(0.02) probably_damaging(0.976) TCGA-E1-A7YS-01 3 9804880 9804880 A G CAMK1 Missense_Mutation p.I78T 0.41 deleterious(0.03) probably_damaging(1) TCGA-E1-A7YS-01 4 39448717 39448717 G T KLB Missense_Mutation p.A791S 0.63 tolerated(0.73) benign(0.024) TCGA-E1-A7YS-01 4 46263984 46263984 T C GABRA2 Missense_Mutation p.R340G 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-E1-A7YS-01 4 95147295 95147295 A G SMARCAD1 Silent p.P72P 0.36 TCGA-E1-A7YS-01 5 67591097 67591097 A G PIK3R1 Missense_Mutation p.N564D 0.43 deleterious(0.02) probably_damaging(0.986) TCGA-E1-A7YS-01 6 116836965 116836965 A C FAM26E Missense_Mutation p.N248T 0.66 tolerated(0.25) benign(0.343) TCGA-E1-A7YS-01 6 29054540 29054540 C A OR2B3 Missense_Mutation p.L162F 0.31 tolerated(0.08) probably_damaging(0.958) TCGA-E1-A7YS-01 7 138252324 138252324 C T TRIM24 Silent p.N543N 0.19 TCGA-E1-A7YS-01 7 23793986 23793986 G A STK31 Missense_Mutation p.V396M 0.26 tolerated(0.11) benign(0.126) TCGA-E1-A7YS-01 7 42003903 42003903 G T GLI3 3'UTR 0.43 TCGA-E1-A7YS-01 7 82784068 82784068 G A PCLO Missense_Mutation p.T630M 0.55 unknown(0) TCGA-E1-A7YS-01 7 92764432 92764432 G A SAMD9L Missense_Mutation p.R285W 0.06 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YS-01 8 125061980 125061980 G C FER1L6 Missense_Mutation p.V953L 0.16 deleterious(0.01) benign(0.206) TCGA-E1-A7YS-01 8 141557702 141557703 GT - AGO2 Frame_Shift_Del p.T538Gfs*135 0.36 TCGA-E1-A7YS-01 8 142185466 142185466 G A DENND3 Missense_Mutation p.V735I 0.07 deleterious(0.01) possibly_damaging(0.613) TCGA-E1-A7YS-01 8 3611478 3611478 C T CSMD1 Missense_Mutation p.R302H 0.35 probably_damaging(0.994) TCGA-E1-A7YS-01 9 132482906 132482906 G A PRRX2 Missense_Mutation p.R160H 0.26 deleterious(0) probably_damaging(1) TCGA-E1-A7YS-01 9 134334665 134334665 C T PRRC2B Silent p.S442S 0.55 TCGA-E1-A7YS-01 9 3293233 3293233 T C RFX3 Missense_Mutation p.E192G 0.92 deleterious(0) probably_damaging(0.977) TCGA-E1-A7YS-01 9 74764597 74764600 AAGT - GDA Splice_Site p.X41_splice 0.68 TCGA-E1-A7YS-01 X 100278580 100278580 G A TRMT2B Missense_Mutation p.S212F 0.87 deleterious(0) probably_damaging(0.996) TCGA-E1-A7YS-01 X 134991047 134991047 G A SAGE1 Missense_Mutation p.R489H 0.94 tolerated(0.57) probably_damaging(0.923) TCGA-E1-A7YU-01 10 98138802 98138802 C T TLL2 Missense_Mutation p.V748I 0.21 tolerated(0.41) benign(0.008) TCGA-E1-A7YU-01 11 18456322 18456322 G A LDHC Missense_Mutation p.G152S 0.23 deleterious(0.03) probably_damaging(1) TCGA-E1-A7YU-01 11 65063367 65063367 T C POLA2 Missense_Mutation p.M518T 0.30 deleterious(0.04) benign(0.005) TCGA-E1-A7YU-01 12 46315926 46315926 C T SCAF11 Missense_Mutation p.V1433I 0.33 deleterious(0.02) probably_damaging(0.91) TCGA-E1-A7YU-01 15 40913870 40913870 T C CASC5 Missense_Mutation p.S496P 0.47 tolerated(0.28) benign(0.009) TCGA-E1-A7YU-01 16 133122 133122 G T MPG Silent p.G129G 0.35 TCGA-E1-A7YU-01 16 56921912 56921912 G A SLC12A3 Missense_Mutation p.A752T 0.06 tolerated(0.29) benign(0.003) TCGA-E1-A7YU-01 17 36912146 36912146 C T PSMB3 Missense_Mutation p.L67F 0.11 tolerated(0.42) benign(0.343) TCGA-E1-A7YU-01 17 46919111 46919111 G A CALCOCO2 Silent p.L14L 0.25 TCGA-E1-A7YU-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.66 deleterious(0) probably_damaging(0.997) TCGA-E1-A7YU-01 18 14542921 14542921 G A POTEC Silent p.S75S 0.18 TCGA-E1-A7YU-01 18 65178396 65178396 A C DSEL Silent p.S1160S 0.22 TCGA-E1-A7YU-01 19 14024100 14024100 C T CC2D1A Silent p.Y166Y 0.25 TCGA-E1-A7YU-01 19 22939575 22939575 C T ZNF99 3'Flank 0.34 TCGA-E1-A7YU-01 1 12438636 12438636 C G VPS13D Missense_Mutation p.T3691S 0.10 possibly_damaging(0.828) TCGA-E1-A7YU-01 1 184692991 184692991 C T EDEM3 Splice_Site p.X250_splice 0.25 TCGA-E1-A7YU-01 2 198267707 198267707 A T SF3B1 Missense_Mutation p.V591E 0.26 deleterious(0.04) benign(0.411) TCGA-E1-A7YU-01 2 207823121 207823121 G A CPO Missense_Mutation p.V122I 0.17 deleterious(0) possibly_damaging(0.785) TCGA-E1-A7YU-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7YU-01 3 108335404 108335404 A G DZIP3 Missense_Mutation p.N92S 0.24 tolerated_low_confidence(0.16) benign(0.002) TCGA-E1-A7YU-01 3 167322149 167322149 A G WDR49 Missense_Mutation p.S15P 0.34 tolerated(0.05) benign(0.132) TCGA-E1-A7YU-01 4 77290583 77290583 C T CCDC158 Missense_Mutation p.R448Q 0.10 tolerated(0.34) benign(0.007) TCGA-E1-A7YU-01 5 140207760 140207760 C T PCDHA6 Silent p.S28S 0.39 TCGA-E1-A7YU-01 6 18197327 18197327 G A KDM1B Missense_Mutation p.V205I 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-E1-A7YU-01 6 86324825 86324825 A G SYNCRIP Silent p.A507A 0.21 TCGA-E1-A7YU-01 7 123595133 123595133 G A SPAM1 Missense_Mutation p.R346Q 0.36 tolerated(1) benign(0.03) TCGA-E1-A7YU-01 8 42586901 42586901 A T CHRNB3 Missense_Mutation p.S151C 0.41 deleterious(0) probably_damaging(1) TCGA-E1-A7YU-01 9 101017533 101017533 A C TBC1D2 Missense_Mutation p.S97R 0.30 tolerated(0.32) benign(0.101) TCGA-E1-A7YV-01 10 134751117 134751117 G A TTC40 Missense_Mutation p.T200M 0.36 deleterious(0.01) benign(0.236) TCGA-E1-A7YV-01 10 48371440 48371440 C T ZNF488 Missense_Mutation p.A303V 0.12 tolerated(0.56) benign(0.009) TCGA-E1-A7YV-01 11 5274540 5274540 T C HBG2 Silent p.G137G 0.35 TCGA-E1-A7YV-01 11 5274542 5274542 C A HBG2 Nonsense_Mutation p.G137* 0.36 TCGA-E1-A7YV-01 11 74717144 74717144 T A NEU3 Silent p.S331S 0.53 TCGA-E1-A7YV-01 12 133358906 133358906 T C GOLGA3 Silent p.A1147A 0.06 TCGA-E1-A7YV-01 12 58142278 58142278 T G CDK4 3'UTR 0.86 TCGA-E1-A7YV-01 14 65233361 65233361 C A SPTB Intron 0.74 TCGA-E1-A7YV-01 15 40594679 40594679 G A PLCB2 Silent p.N121N 0.67 TCGA-E1-A7YV-01 15 77472399 77472399 T C PEAK1 Missense_Mutation p.I624V 0.22 tolerated(1) benign(0.009) TCGA-E1-A7YV-01 16 10867944 10867944 G T TVP23A Missense_Mutation p.N92K 0.22 deleterious(0) probably_damaging(1) TCGA-E1-A7YV-01 16 23197657 23197657 C A SCNN1G Missense_Mutation p.A22E 0.40 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YV-01 17 62891235 62891235 G T LRRC37A3 Missense_Mutation p.T714N 0.21 deleterious(0.01) benign(0.347) TCGA-E1-A7YV-01 17 67249984 67249984 T C ABCA5 Missense_Mutation p.E1424G 0.29 tolerated(0.08) possibly_damaging(0.791) TCGA-E1-A7YV-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.79 deleterious(0) probably_damaging(0.998) TCGA-E1-A7YV-01 19 15905375 15905375 G T OR10H5 Nonsense_Mutation p.E173* 0.17 TCGA-E1-A7YV-01 19 21991522 21991522 T A ZNF43 Silent p.S439S 0.37 TCGA-E1-A7YV-01 19 23405268 23405268 T C ZNF724P Silent p.K593K 0.32 TCGA-E1-A7YV-01 19 50861856 50861856 G A NAPSA Missense_Mutation p.A406V 0.17 tolerated_low_confidence(0.16) benign(0.007) TCGA-E1-A7YV-01 19 5783642 5783642 G A PRR22 Silent p.L206L 0.55 TCGA-E1-A7YV-01 19 7614924 7614924 C A PNPLA6 Silent p.G589G 0.14 TCGA-E1-A7YV-01 1 118558791 118558792 TT - SPAG17 Frame_Shift_Del p.Q1363Vfs*6 0.30 TCGA-E1-A7YV-01 1 247013610 247013610 T C AHCTF1 Missense_Mutation p.S1909G 0.66 tolerated(0.14) benign(0.005) TCGA-E1-A7YV-01 22 19175592 19175592 C A CLTCL1 Silent p.L1445L 0.12 TCGA-E1-A7YV-01 22 42114206 42114206 G A MEI1 Missense_Mutation p.E221K 0.24 deleterious(0) probably_damaging(0.987) TCGA-E1-A7YV-01 2 179419627 179419627 C - TTN Frame_Shift_Del p.G29520Afs*27 0.14 TCGA-E1-A7YV-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7YV-01 2 31010026 31010026 G A CAPN13 Missense_Mutation p.R56C 0.38 deleterious(0.02) possibly_damaging(0.759) TCGA-E1-A7YV-01 2 37035830 37035830 C G VIT Missense_Mutation p.N535K 0.29 deleterious(0) possibly_damaging(0.71) TCGA-E1-A7YV-01 2 55561312 55561312 C T CCDC88A Missense_Mutation p.R882H 0.33 deleterious(0) probably_damaging(0.999) TCGA-E1-A7YV-01 3 176752004 176752004 G C TBL1XR1 Missense_Mutation p.A411G 0.22 tolerated(0.33) benign(0.201) TCGA-E1-A7YV-01 3 36879945 36879945 T C TRANK1 Missense_Mutation p.K1768R 0.42 tolerated(0.19) benign(0.001) TCGA-E1-A7YV-01 4 164272764 164272764 T A NPY5R 3'UTR 0.05 TCGA-E1-A7YV-01 4 189060990 189060990 G T TRIML1 Missense_Mutation p.G93V 0.43 tolerated(0.27) benign(0.007) TCGA-E1-A7YV-01 4 70355278 70355278 T A UGT2B4 Missense_Mutation p.E294V 0.15 deleterious(0) possibly_damaging(0.853) TCGA-E1-A7YV-01 4 74351580 74351580 A T AFM Missense_Mutation p.N91I 0.33 tolerated(0.76) benign(0.151) TCGA-E1-A7YV-01 5 102295742 102295742 A C PAM Missense_Mutation p.M357L 0.48 tolerated(0.09) benign(0.091) TCGA-E1-A7YV-01 5 45645301 45645301 G A HCN1 Missense_Mutation p.H279Y 0.37 deleterious(0.02) probably_damaging(0.992) TCGA-E1-A7YV-01 6 10930655 10930655 C - SYCP2L Frame_Shift_Del p.S515Vfs*14 0.28 TCGA-E1-A7YV-01 6 117642501 117642501 T C ROS1 Missense_Mutation p.I1900V 0.16 tolerated(0.65) benign(0.002) TCGA-E1-A7YV-01 6 54805986 54805986 C A FAM83B Silent p.S739S 0.07 TCGA-E1-A7YV-01 6 70500318 70500318 C T LMBRD1 Missense_Mutation p.R39Q 0.44 tolerated(0.27) benign(0.012) TCGA-E1-A7YV-01 6 72889334 72889334 G C RIMS1 Silent p.G176G 0.16 TCGA-E1-A7YV-01 6 86215624 86215624 A G SNX14 3'UTR 0.42 TCGA-E1-A7YV-01 7 124387196 124387196 C T GPR37 Missense_Mutation p.G409R 0.05 tolerated(0.19) possibly_damaging(0.889) TCGA-E1-A7YV-01 7 150775729 150775729 G A FASTK Missense_Mutation p.R249W 0.31 deleterious(0.04) benign(0.017) TCGA-E1-A7YV-01 7 24784276 24784276 C A DFNA5 Silent p.L103L 0.38 TCGA-E1-A7YV-01 7 76033640 76033640 A T SRCRB4D Silent p.L39L 0.35 TCGA-E1-A7YV-01 7 89976014 89976014 T C GTPBP10 5'UTR 0.06 TCGA-E1-A7YV-01 8 114031311 114031311 T C CSMD3 Missense_Mutation p.S339G 0.06 deleterious(0.04) possibly_damaging(0.497) TCGA-E1-A7YV-01 8 145665836 145665836 A T TONSL Silent p.I396I 0.42 TCGA-E1-A7YV-01 9 137712051 137712051 C T COL5A1 Silent p.S1512S 0.33 TCGA-E1-A7YV-01 9 139793219 139793219 T - TRAF2 Frame_Shift_Del p.G10Afs*76 0.24 TCGA-E1-A7YV-01 9 82187749 82187749 C A TLE4 Missense_Mutation p.P15Q 0.08 tolerated(0.09) possibly_damaging(0.551) TCGA-E1-A7YV-01 9 84607105 84607105 C T SPATA31D1 Missense_Mutation p.H574Y 0.04 tolerated(0.74) benign(0.088) TCGA-E1-A7YV-01 X 11317075 11317075 G A AMELX Silent p.K198K 0.34 TCGA-E1-A7YV-01 X 117532347 117532347 C G WDR44 Intron 0.14 TCGA-E1-A7YV-01 X 142967238 142967238 C A UBE2NL Silent p.T12T 0.38 TCGA-E1-A7YV-01 X 148690439 148690439 G T TMEM185A Missense_Mutation p.L100M 0.16 deleterious(0.04) probably_damaging(0.95) TCGA-E1-A7YV-01 X 43590513 43590513 G C MAOA Missense_Mutation p.G224A 0.33 tolerated(0.38) benign(0.073) TCGA-E1-A7YV-01 X 76937602 76937602 A - ATRX Frame_Shift_Del p.I1049Kfs*69 0.26 TCGA-E1-A7YV-01 X 91642841 91642841 C T PCDH11X Silent p.G1084G 0.46 TCGA-E1-A7YW-01 10 44139670 44139670 T C ZNF32 Missense_Mutation p.Y217C 0.17 deleterious(0) probably_damaging(0.982) TCGA-E1-A7YW-01 11 82643953 82643953 A T C11orf82 Missense_Mutation p.N525Y 0.36 deleterious(0.03) benign(0.219) TCGA-E1-A7YW-01 12 103246665 103246665 C T PAH Missense_Mutation p.G257D 0.31 deleterious(0) probably_damaging(1) TCGA-E1-A7YW-01 15 101845470 101845470 G A PCSK6 Missense_Mutation p.A967V 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.511) TCGA-E1-A7YW-01 15 57523417 57523418 - TGGT TCF12 Frame_Shift_Ins p.P217Gfs*8 0.28 TCGA-E1-A7YW-01 15 74623324 74623324 G T CCDC33 Missense_Mutation p.K516N 0.31 deleterious(0.02) benign(0.004) TCGA-E1-A7YW-01 16 87367623 87367623 C T FBXO31 Silent p.E422E 0.51 TCGA-E1-A7YW-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.87 deleterious(0) probably_damaging(1) TCGA-E1-A7YW-01 19 57985169 57985169 T C ZNF772 Missense_Mutation p.I315V 0.07 tolerated(1) probably_damaging(0.997) TCGA-E1-A7YW-01 19 8609329 8609329 C G MYO1F Missense_Mutation p.S459T 0.37 deleterious(0.04) benign(0.141) TCGA-E1-A7YW-01 1 152283044 152283044 A C FLG Missense_Mutation p.S1440A 0.41 benign(0.097) TCGA-E1-A7YW-01 1 25718594 25718594 G A RHCE Silent p.F175F 0.46 TCGA-E1-A7YW-01 20 31958332 31958333 - CC CDK5RAP1 Frame_Shift_Ins p.F456Afs*8 0.30 TCGA-E1-A7YW-01 2 128394439 128394439 C T MYO7B Missense_Mutation p.A2067V 0.37 tolerated(0.19) benign(0.002) TCGA-E1-A7YW-01 2 179323278 179323278 A T DFNB59 Missense_Mutation p.K197N 0.41 tolerated(0.29) benign(0.172) TCGA-E1-A7YW-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7YW-01 3 184020270 184020270 A C PSMD2 Missense_Mutation p.N273H 0.11 tolerated(0.11) probably_damaging(0.988) TCGA-E1-A7YW-01 3 56026189 56026189 G A ERC2 Silent p.D717D 0.09 TCGA-E1-A7YW-01 4 6578364 6578364 C T MAN2B2 Silent p.R66R 0.48 TCGA-E1-A7YW-01 5 79355295 79355295 A C THBS4 Silent p.I255I 0.39 TCGA-E1-A7YW-01 6 54791239 54791239 G A FAM83B Missense_Mutation p.R172Q 0.47 deleterious(0) possibly_damaging(0.899) TCGA-E1-A7YW-01 7 142566372 142566372 G A EPHB6 Missense_Mutation p.A721T 0.12 deleterious(0) benign(0.407) TCGA-E1-A7YW-01 8 105263256 105263256 G A RIMS2 Silent p.P1232P 0.46 TCGA-E1-A7YW-01 8 136561043 136561043 A G KHDRBS3 Missense_Mutation p.N124S 0.12 tolerated(1) possibly_damaging(0.447) TCGA-E1-A7YW-01 9 138642849 138642849 G A KCNT1 Silent p.V132V 0.26 TCGA-E1-A7YW-01 X 103411655 103411655 C T FAM199X Silent p.H63H 0.11 TCGA-E1-A7YW-01 X 76937426 76937426 A - ATRX Frame_Shift_Del p.S1108Hfs*10 0.45 TCGA-E1-A7YY-01 10 27499972 27499972 C T ACBD5 Silent p.Q325Q 0.11 TCGA-E1-A7YY-01 14 94160680 94160680 G T UNC79 Splice_Site p.X2353_splice 0.17 TCGA-E1-A7YY-01 16 29994404 29994404 C G TAOK2 Silent p.P337P 0.05 TCGA-E1-A7YY-01 16 81953130 81953130 G A PLCG2 Missense_Mutation p.G699D 0.08 deleterious(0) probably_damaging(1) TCGA-E1-A7YY-01 19 42791715 42791715 C T CIC Missense_Mutation p.R201W 0.09 probably_damaging(1) TCGA-E1-A7YY-01 2 175618969 175618969 C T CHRNA1 Missense_Mutation p.G198D 0.05 deleterious(0) possibly_damaging(0.799) TCGA-E1-A7YY-01 2 177054653 177054653 C T HOXD1 Missense_Mutation p.A257V 0.05 deleterious(0) probably_damaging(0.995) TCGA-E1-A7YY-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7YY-01 2 33747057 33747057 G A RASGRP3 Missense_Mutation p.R135K 0.08 tolerated(0.14) possibly_damaging(0.772) TCGA-E1-A7YY-01 X 117582883 117582885 TTC - WDR44 In_Frame_Del p.L894del 0.14 TCGA-E1-A7Z2-01 10 37430975 37430975 G A ANKRD30A Missense_Mutation p.A328T 0.06 tolerated(0.81) possibly_damaging(0.821) TCGA-E1-A7Z2-01 11 125887050 125887050 G A CDON Silent p.N287N 0.39 TCGA-E1-A7Z2-01 11 65810541 65810541 C T GAL3ST3 Missense_Mutation p.D245N 0.44 deleterious(0) probably_damaging(0.999) TCGA-E1-A7Z2-01 13 98828793 98828793 C A RNF113B Missense_Mutation p.G233V 0.32 deleterious(0) benign(0.358) TCGA-E1-A7Z2-01 14 100792127 100792127 G A SLC25A47 Missense_Mutation p.V11I 0.25 tolerated(0.14) benign(0.015) TCGA-E1-A7Z2-01 14 106090898 106090898 C T IGHG4 Missense_Mutation p.G300E 0.60 deleterious(0.04) possibly_damaging(0.907) TCGA-E1-A7Z2-01 16 3139727 3139727 G A ZSCAN10 Missense_Mutation p.R515W 0.28 deleterious(0) probably_damaging(0.989) TCGA-E1-A7Z2-01 16 46655218 46655218 C T SHCBP1 Silent p.P18P 0.36 TCGA-E1-A7Z2-01 17 28537613 28537613 C T SLC6A4 Missense_Mutation p.V457I 0.28 tolerated(0.75) benign(0.002) TCGA-E1-A7Z2-01 17 35300251 35300251 G A LHX1 Silent p.A348A 0.50 TCGA-E1-A7Z2-01 17 42400907 42400907 G A SLC25A39 Silent p.G8G 0.45 TCGA-E1-A7Z2-01 17 79288241 79288241 C T TMEM105 Missense_Mutation p.A8T 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.682) TCGA-E1-A7Z2-01 17 79682008 79682008 T - SLC25A10 Frame_Shift_Del p.V40Gfs*5 0.25 TCGA-E1-A7Z2-01 18 14850370 14850370 A G ANKRD30B Missense_Mutation p.N1066D 0.27 tolerated(0.07) probably_damaging(0.953) TCGA-E1-A7Z2-01 19 14094339 14094339 C T RFX1 Missense_Mutation p.V130I 0.29 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-E1-A7Z2-01 19 1827746 1827746 C T REXO1 Missense_Mutation p.D348N 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-E1-A7Z2-01 19 31768091 31768091 C T TSHZ3 Missense_Mutation p.E870K 0.35 deleterious(0.04) possibly_damaging(0.738) TCGA-E1-A7Z2-01 19 31769601 31769601 G A TSHZ3 Silent p.Y366Y 0.33 TCGA-E1-A7Z2-01 19 50862030 50862030 C T NAPSA Missense_Mutation p.R348Q 0.30 tolerated(1) benign(0.019) TCGA-E1-A7Z2-01 1 110741027 110741027 C T SLC6A17 Silent p.S715S 0.41 TCGA-E1-A7Z2-01 1 228471427 228471427 C T OBSCN Silent p.C3416C 0.27 TCGA-E1-A7Z2-01 1 248616849 248616849 G A OR2T2 Missense_Mutation p.V251I 0.33 tolerated(0.25) benign(0) TCGA-E1-A7Z2-01 20 42885841 42885841 G A GDAP1L1 Missense_Mutation p.V77M 0.50 deleterious(0) probably_damaging(0.977) TCGA-E1-A7Z2-01 20 46262895 46262895 A T NCOA3 Silent p.V356V 0.20 TCGA-E1-A7Z2-01 20 46262897 46262897 C G NCOA3 Missense_Mutation p.T357R 0.19 deleterious(0) probably_damaging(0.969) TCGA-E1-A7Z2-01 22 43821099 43821099 G A MPPED1 Silent p.R36R 0.53 TCGA-E1-A7Z2-01 2 135782204 135782204 G A MAP3K19 Missense_Mutation p.P5L 0.27 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-E1-A7Z2-01 2 18112378 18112378 C T KCNS3 Missense_Mutation p.R35W 0.33 deleterious(0.05) benign(0.391) TCGA-E1-A7Z2-01 3 183963520 183963520 C T ALG3 Missense_Mutation p.G93S 0.47 deleterious(0) probably_damaging(1) TCGA-E1-A7Z2-01 3 62153675 62153675 G A PTPRG Missense_Mutation p.E291K 0.33 deleterious(0) probably_damaging(0.91) TCGA-E1-A7Z2-01 3 8775524 8775524 C A CAV3 5'UTR 0.24 TCGA-E1-A7Z2-01 4 17616293 17616293 G C MED28 Missense_Mutation p.G6R 0.28 deleterious_low_confidence(0) possibly_damaging(0.733) TCGA-E1-A7Z2-01 4 80246705 80246705 C A NAA11 Silent p.L109L 0.33 TCGA-E1-A7Z2-01 4 88723847 88723847 C T IBSP Silent p.A49A 0.32 TCGA-E1-A7Z2-01 5 140558995 140558995 C T PCDHB8 Silent p.F460F 0.14 TCGA-E1-A7Z2-01 5 179563505 179563505 C T RASGEF1C Missense_Mutation p.R104Q 0.50 tolerated(0.25) benign(0.008) TCGA-E1-A7Z2-01 7 101459365 101459365 C T CUX1 Nonsense_Mutation p.Q19* 0.72 TCGA-E1-A7Z2-01 7 143748419 143748419 A C OR2A5 Silent p.R309R 0.58 TCGA-E1-A7Z2-01 7 151859576 151859576 G - KMT2C Frame_Shift_Del p.Q3696Nfs*9 0.23 TCGA-E1-A7Z2-01 7 152345781 152345781 G C XRCC2 Missense_Mutation p.N263K 0.35 tolerated(0.41) benign(0.002) TCGA-E1-A7Z2-01 7 55210075 55210075 T G EGFR Missense_Mutation p.L62R 0.20 deleterious(0.01) probably_damaging(0.962) TCGA-E1-A7Z2-01 8 105261789 105261789 G T RIMS2 Missense_Mutation p.V1222L 0.23 tolerated_low_confidence(0.1) probably_damaging(0.92) TCGA-E1-A7Z2-01 9 113006418 113006418 A G TXN 3'UTR 0.26 TCGA-E1-A7Z2-01 9 127074826 127074826 G A NEK6 Silent p.A77A 0.25 TCGA-E1-A7Z2-01 X 153033031 153033031 G A PLXNB3 Missense_Mutation p.R273H 0.39 deleterious(0.01) probably_damaging(1) TCGA-E1-A7Z2-01 X 70828953 70828953 G A ACRC Missense_Mutation p.V533I 0.41 unknown(0) TCGA-E1-A7Z3-01 10 30317528 30317528 T C KIAA1462 Missense_Mutation p.R517G 0.08 deleterious(0.02) possibly_damaging(0.546) TCGA-E1-A7Z3-01 11 108119696 108119696 C G ATM Missense_Mutation p.Q368E 0.05 deleterious(0.01) possibly_damaging(0.45) TCGA-E1-A7Z3-01 12 131620642 131620642 C T GPR133 Silent p.G776G 0.09 TCGA-E1-A7Z3-01 12 57442017 57442017 G A MYO1A Missense_Mutation p.R31C 0.37 deleterious(0) probably_damaging(1) TCGA-E1-A7Z3-01 14 92466345 92466345 T C TRIP11 Silent p.Q1555Q 0.08 TCGA-E1-A7Z3-01 14 94039083 94039083 A G UNC79 Missense_Mutation p.E487G 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-E1-A7Z3-01 14 95053930 95053930 C T SERPINA5 Silent p.A77A 0.10 TCGA-E1-A7Z3-01 15 25468207 25468207 T C SNORD115-27 3'Flank 0.24 TCGA-E1-A7Z3-01 15 28413709 28413709 C A HERC2 Silent p.P3419P 0.06 TCGA-E1-A7Z3-01 15 43694049 43694052 GTAA - TUBGCP4 Splice_Site p.X577_splice 0.20 TCGA-E1-A7Z3-01 15 59453404 59453404 T C MYO1E Missense_Mutation p.N885D 0.18 deleterious(0.05) benign(0.049) TCGA-E1-A7Z3-01 16 71319563 71319563 C T CMTR2 Silent p.E87E 0.05 TCGA-E1-A7Z3-01 17 7578275 7578277 GAG - TP53 In_Frame_Del p.P191del 0.38 TCGA-E1-A7Z3-01 18 14183745 14183745 A T ANKRD20A5P RNA 0.04 TCGA-E1-A7Z3-01 19 44030437 44030437 G A ETHE1 Silent p.G97G 0.09 TCGA-E1-A7Z3-01 19 57088811 57088811 A C ZNF470 Missense_Mutation p.K338N 0.36 deleterious(0) possibly_damaging(0.647) TCGA-E1-A7Z3-01 1 155895455 155895455 T C KIAA0907 Silent p.R287R 0.32 TCGA-E1-A7Z3-01 1 197021808 197021808 T C F13B Missense_Mutation p.Q504R 0.25 tolerated(0.12) benign(0.012) TCGA-E1-A7Z3-01 1 26650676 26650676 G C AIM1L Missense_Mutation p.I694M 0.11 deleterious(0.01) possibly_damaging(0.763) TCGA-E1-A7Z3-01 1 27278347 27278347 C T C1orf172 Silent p.P175P 0.23 TCGA-E1-A7Z3-01 20 17639269 17639271 CTT - RRBP1 In_Frame_Del p.K198del 0.09 TCGA-E1-A7Z3-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7Z3-01 2 234652389 234652389 G A UGT1A10 Intron 0.29 TCGA-E1-A7Z3-01 3 132166297 132166299 CTT - DNAJC13 In_Frame_Del p.L94del 0.26 TCGA-E1-A7Z3-01 3 45636577 45636578 CT - LIMD1 Frame_Shift_Del p.L70Afs*5 0.19 TCGA-E1-A7Z3-01 3 77542481 77542481 C G ROBO2 Missense_Mutation p.P268A 0.32 deleterious(0.01) possibly_damaging(0.822) TCGA-E1-A7Z3-01 3 97499462 97499462 G C ARL6 Missense_Mutation p.L63F 0.22 tolerated(0.11) benign(0.068) TCGA-E1-A7Z3-01 4 71255736 71255736 A G SMR3B 3'UTR 0.37 TCGA-E1-A7Z3-01 4 83601969 83601971 AGA - SCD5 In_Frame_Del p.F153del 0.24 TCGA-E1-A7Z3-01 5 76707533 76707534 TG - PDE8B Frame_Shift_Del p.F523Yfs*2 0.16 TCGA-E1-A7Z3-01 6 44394423 44394423 A C CDC5L Missense_Mutation p.N619H 0.18 tolerated(1) benign(0.001) TCGA-E1-A7Z3-01 7 102957362 102957362 C T DNAJC2 Missense_Mutation p.G448R 0.15 tolerated(0.27) possibly_damaging(0.451) TCGA-E1-A7Z3-01 7 48319515 48319515 A G ABCA13 Silent p.Q2908Q 0.10 TCGA-E1-A7Z3-01 9 79986031 79986031 G T VPS13A Missense_Mutation p.D3015Y 0.07 deleterious(0) probably_damaging(1) TCGA-E1-A7Z3-01 X 139586563 139586563 A G SOX3 Silent p.D221D 0.31 TCGA-E1-A7Z3-01 X 15306083 15306083 C T ASB11 Missense_Mutation p.R256H 0.14 tolerated(0.13) benign(0.116) TCGA-E1-A7Z3-01 X 76778764 76778767 TTTC - ATRX Frame_Shift_Del p.R2271Kfs*14 0.28 TCGA-E1-A7Z3-01 X 77155051 77155051 A G COX7B Translation_Start_Site p.M1? 0.07 tolerated(0.05) benign(0.21) TCGA-E1-A7Z4-01 10 105922110 105922110 C T WDR96 Missense_Mutation p.V1100M 0.05 tolerated(0.2) benign(0.006) TCGA-E1-A7Z4-01 10 27537142 27537142 A G RP11-85G18.6 Intron 0.38 TCGA-E1-A7Z4-01 11 62290002 62290002 C T AHNAK Missense_Mutation p.V3963I 0.05 benign(0.009) TCGA-E1-A7Z4-01 12 102158787 102158787 C T GNPTAB Silent p.R636R 0.37 TCGA-E1-A7Z4-01 12 57605713 57605713 T C LRP1 Missense_Mutation p.I4421T 0.08 benign(0) TCGA-E1-A7Z4-01 12 7805222 7805222 G A APOBEC1 Missense_Mutation p.T85I 0.13 tolerated(0.11) benign(0.35) TCGA-E1-A7Z4-01 14 95677044 95677044 G C CLMN Missense_Mutation p.P261A 0.45 deleterious(0.03) probably_damaging(0.988) TCGA-E1-A7Z4-01 17 62007606 62007606 G C CD79B Silent p.P87P 0.05 TCGA-E1-A7Z4-01 17 7578213 7578214 AA - TP53 Frame_Shift_Del p.F212Sfs*3 0.47 TCGA-E1-A7Z4-01 18 677371 677371 T C ENOSF1 Missense_Mutation p.I381M 0.37 deleterious(0) probably_damaging(0.975) TCGA-E1-A7Z4-01 19 18541701 18541701 C A SSBP4 Missense_Mutation p.D110E 0.09 tolerated(0.09) benign(0.118) TCGA-E1-A7Z4-01 19 48806994 48806994 C T CCDC114 Missense_Mutation p.V264M 0.09 deleterious(0) probably_damaging(0.989) TCGA-E1-A7Z4-01 1 100488042 100488042 A C SLC35A3 3'UTR 0.41 TCGA-E1-A7Z4-01 1 159504970 159504970 C T OR10J5 Silent p.T276T 0.42 TCGA-E1-A7Z4-01 2 141083421 141083421 G A LRP1B Missense_Mutation p.R4084C 0.05 possibly_damaging(0.689) TCGA-E1-A7Z4-01 2 197705766 197705766 A T PGAP1 3'UTR 0.53 TCGA-E1-A7Z4-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7Z4-01 2 233391274 233391274 C T CHRND Missense_Mutation p.R30W 0.37 deleterious(0.01) possibly_damaging(0.846) TCGA-E1-A7Z4-01 5 156899689 156899689 C A NIPAL4 Silent p.I374I 0.46 TCGA-E1-A7Z4-01 5 156899850 156899850 C T NIPAL4 Missense_Mutation p.P428L 0.35 tolerated(0.12) probably_damaging(0.916) TCGA-E1-A7Z4-01 8 2910030 2910030 T C CSMD1 Silent p.Q2538Q 0.42 TCGA-E1-A7Z4-01 9 120475584 120475584 A G TLR4 Missense_Mutation p.Q393R 0.11 tolerated(0.37) benign(0.01) TCGA-E1-A7Z4-01 9 79820286 79820286 T C VPS13A Missense_Mutation p.V82A 0.06 tolerated(0.11) benign(0.217) TCGA-E1-A7Z4-01 9 86518658 86518658 C A KIF27 Nonsense_Mutation p.E259* 0.04 TCGA-E1-A7Z4-01 X 76938562 76938562 G C ATRX Nonsense_Mutation p.S729* 0.67 TCGA-E1-A7Z4-01 X 76940490 76940491 - AG ATRX Frame_Shift_Ins p.K202Lfs*5 0.09 TCGA-E1-A7Z6-01 11 82444517 82444517 G C FAM181B Silent p.G85G 0.25 TCGA-E1-A7Z6-01 12 69085759 69085759 G C NUP107 Silent p.L105L 0.07 TCGA-E1-A7Z6-01 14 106236175 106236175 G A IGHG3 Silent p.D210D 0.36 TCGA-E1-A7Z6-01 16 20422897 20422897 G C ACSM5 Missense_Mutation p.V31L 0.33 tolerated(0.98) benign(0.001) TCGA-E1-A7Z6-01 17 30216366 30216366 C T UTP6 Missense_Mutation p.A161T 0.10 deleterious(0) possibly_damaging(0.85) TCGA-E1-A7Z6-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.81 deleterious(0) probably_damaging(0.998) TCGA-E1-A7Z6-01 18 29102206 29102206 C A DSG2 Missense_Mutation p.D228E 0.31 deleterious(0) probably_damaging(1) TCGA-E1-A7Z6-01 1 159505472 159505472 G C OR10J5 Missense_Mutation p.T109S 0.19 tolerated(0.16) benign(0.044) TCGA-E1-A7Z6-01 1 174973950 174973950 G A CACYBP Silent p.T72T 0.20 TCGA-E1-A7Z6-01 1 26365560 26365560 G A SLC30A2 3'UTR 0.17 TCGA-E1-A7Z6-01 1 45480412 45480412 T C UROD Missense_Mutation p.I260T 0.10 deleterious(0) benign(0.408) TCGA-E1-A7Z6-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-E1-A7Z6-01 3 130285651 130285651 T C COL6A6 Missense_Mutation p.V463A 0.07 tolerated(0.07) benign(0.039) TCGA-E1-A7Z6-01 4 114239726 114239726 C T ANK2 Silent p.G950G 0.50 TCGA-E1-A7Z6-01 6 31599148 31599148 C T PRRC2A Nonsense_Mutation p.R900* 0.18 TCGA-E1-A7Z6-01 6 5002336 5002336 T A RPP40 Missense_Mutation p.K89N 0.06 tolerated(0.09) benign(0.389) TCGA-E1-A7Z6-01 7 150945585 150945585 G C SMARCD3 Missense_Mutation p.L22V 0.50 tolerated_low_confidence(0.12) benign(0.005) TCGA-E1-A7Z6-01 8 14181681 14181681 C T SGCZ Silent p.K89K 0.38 TCGA-E1-A7Z6-01 9 131708674 131708674 A G DOLK Silent p.Y303Y 0.12 TCGA-E1-A7Z6-01 9 138594103 138594103 G A KCNT1 5'UTR 0.08 TCGA-E1-A7Z6-01 9 8341765 8341765 C T PTPRD Silent p.L1625L 0.39 TCGA-E1-A7Z6-01 X 102979205 102979205 G A GLRA4 Missense_Mutation p.R99W 0.30 deleterious(0) probably_damaging(1) TCGA-E1-A7Z6-01 X 106229295 106229295 A G MORC4 Silent p.V148V 0.41 TCGA-E1-A7Z6-01 X 107938635 107938635 T C COL4A5 Missense_Mutation p.W1654R 0.06 probably_damaging(1) TCGA-E1-A7Z6-01 X 111698669 111698669 T C ZCCHC16 Missense_Mutation p.L238S 0.42 tolerated(0.49) benign(0.019) TCGA-E1-A7Z6-01 X 131211833 131211833 A G FRMD7 3'UTR 0.29 TCGA-E1-A7Z6-01 X 147106528 147106528 C A FMR1NB 3'UTR 0.47 TCGA-E1-A7Z6-01 X 63563595 63563595 C G MTMR8 Missense_Mutation p.E291Q 0.45 tolerated(0.13) benign(0.014) TCGA-E1-A7Z6-01 X 71350457 71350457 G A RGAG4 Missense_Mutation p.R312C 0.09 deleterious(0) probably_damaging(0.959) TCGA-E1-A7Z6-01 X 76939469 76939470 TC - ATRX Frame_Shift_Del p.N428Yfs*5 0.28 TCGA-EZ-7264-01 10 102789858 102789858 G A PDZD7 Missense_Mutation p.T40M 0.51 deleterious_low_confidence(0.02) benign(0.04) TCGA-EZ-7264-01 10 64975203 64975203 G A JMJD1C Missense_Mutation p.R279C 0.44 deleterious(0) probably_damaging(0.973) TCGA-EZ-7264-01 12 63994085 63994085 C T DPY19L2 Splice_Site p.X453_splice 0.39 TCGA-EZ-7264-01 14 23390166 23390166 C T PRMT5 Missense_Mutation p.V621I 0.34 tolerated(0.44) benign(0.002) TCGA-EZ-7264-01 16 31200459 31200461 ACA - FUS In_Frame_Del p.N285del 0.26 TCGA-EZ-7264-01 17 18052562 18052562 A G MYO15A Missense_Mutation p.D2330G 0.41 unknown(0) TCGA-EZ-7264-01 17 33738552 33738552 C T SLFN12 Silent p.S514S 0.36 TCGA-EZ-7264-01 17 36214092 36214092 G A YWHAEP7 RNA 0.10 TCGA-EZ-7264-01 17 6348641 6348641 C T FAM64A Missense_Mutation p.R71C 0.29 deleterious(0.02) probably_damaging(0.984) TCGA-EZ-7264-01 17 76456336 76456336 C T DNAH17 Missense_Mutation p.V3101I 0.55 benign(0.38) TCGA-EZ-7264-01 18 6999522 6999522 C T LAMA1 Missense_Mutation p.V1529I 0.08 tolerated(0.3) benign(0.005) TCGA-EZ-7264-01 19 10812925 10812925 C T QTRT1 Missense_Mutation p.A149V 0.07 tolerated(0.06) benign(0.109) TCGA-EZ-7264-01 19 11979475 11979475 G A ZNF439 3'UTR 0.42 TCGA-EZ-7264-01 19 18779269 18779269 G A KLHL26 Silent p.T354T 0.27 TCGA-EZ-7264-01 19 33096834 33096834 A G ANKRD27 Silent p.N800N 0.53 TCGA-EZ-7264-01 19 42798878 42798878 T G CIC Missense_Mutation p.F1484V 0.74 possibly_damaging(0.879) TCGA-EZ-7264-01 19 53643617 53643617 C T ZNF347 Missense_Mutation p.V823M 0.64 tolerated(0.11) benign(0.288) TCGA-EZ-7264-01 1 78425869 78425869 C G FUBP1 Missense_Mutation p.A526P 0.48 tolerated(0.08) unknown(0) TCGA-EZ-7264-01 20 17240949 17240949 G A PCSK2 Missense_Mutation p.R81H 0.43 tolerated(0.08) possibly_damaging(0.765) TCGA-EZ-7264-01 21 11058309 11058309 A G BAGE2 RNA 0.04 TCGA-EZ-7264-01 2 131802995 131802995 C A ARHGEF4 Missense_Mutation p.Q633K 0.33 tolerated(0.22) benign(0.141) TCGA-EZ-7264-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-EZ-7264-01 2 211471549 211471549 C T CPS1 Silent p.G698G 0.52 TCGA-EZ-7264-01 2 21234703 21234703 C T APOB Silent p.G1679G 0.31 TCGA-EZ-7264-01 2 219900291 219900291 C T CCDC108 Silent p.L151L 0.44 TCGA-EZ-7264-01 2 26696893 26696893 C G OTOF Missense_Mutation p.G1125A 0.32 deleterious(0.01) possibly_damaging(0.786) TCGA-EZ-7264-01 3 64607885 64607885 T C ADAMTS9 Missense_Mutation p.K892R 0.55 tolerated(0.77) benign(0.001) TCGA-EZ-7264-01 5 176310845 176310845 A G HK3 Missense_Mutation p.I660T 0.11 deleterious(0) probably_damaging(0.999) TCGA-EZ-7264-01 6 128134187 128134187 T C THEMIS Silent p.E533E 0.42 TCGA-EZ-7264-01 6 16327718 16327718 G A ATXN1 Missense_Mutation p.T275M 0.36 deleterious(0.02) probably_damaging(0.935) TCGA-EZ-7264-01 6 44224548 44224548 G C SLC35B2 Missense_Mutation p.P27A 0.07 tolerated(0.77) benign(0) TCGA-EZ-7264-01 8 144945118 144945118 G T EPPK1 Missense_Mutation p.F768L 0.04 probably_damaging(0.984) TCGA-EZ-7264-01 9 124111437 124111437 C A STOM Missense_Mutation p.Q162H 0.64 deleterious(0) possibly_damaging(0.897) TCGA-EZ-7264-01 9 134349974 134349974 A G PRRC2B Missense_Mutation p.I820V 0.16 tolerated(1) benign(0.002) TCGA-EZ-7264-01 X 112058788 112058788 T C AMOT Missense_Mutation p.Q397R 0.08 unknown(0) TCGA-EZ-7264-01 X 53618082 53618082 G C HUWE1 Missense_Mutation p.L1325V 0.42 probably_damaging(0.999) TCGA-EZ-7264-01 X 70824013 70824013 G A ACRC Missense_Mutation p.D296N 0.43 unknown(0) TCGA-EZ-7264-01 X 74519578 74519578 A G UPRT Missense_Mutation p.M191V 0.07 deleterious(0) probably_damaging(0.996) TCGA-F6-A8O3-01 10 24669989 24669989 A G KIAA1217 Silent p.R182R 0.37 TCGA-F6-A8O3-01 10 96480296 96480296 T C CYP2C18 Splice_Site p.X321_splice 0.44 TCGA-F6-A8O3-01 11 103866968 103866968 T C PDGFD Missense_Mutation p.D112G 0.20 deleterious(0) probably_damaging(1) TCGA-F6-A8O3-01 11 108124759 108124759 C A ATM Nonsense_Mutation p.S706* 0.38 TCGA-F6-A8O3-01 11 76507258 76507258 C G TSKU Missense_Mutation p.P200A 0.44 deleterious(0) probably_damaging(0.999) TCGA-F6-A8O3-01 12 52760836 52760836 G A KRT85 Silent p.C118C 0.33 TCGA-F6-A8O3-01 12 7967043 7967043 G A SLC2A14 Missense_Mutation p.R478C 0.38 deleterious(0) probably_damaging(0.984) TCGA-F6-A8O3-01 14 64998648 64998648 A G RP11-973N13.4 Intron 0.10 TCGA-F6-A8O3-01 15 83218295 83218295 A G CPEB1 Silent p.A438A 0.49 TCGA-F6-A8O3-01 16 57998056 57998056 C T CNGB1 Missense_Mutation p.A90T 0.43 tolerated_low_confidence(0.55) benign(0.003) TCGA-F6-A8O3-01 17 39521493 39521493 C T KRT33B Silent p.A270A 0.44 TCGA-F6-A8O3-01 19 1080421 1080421 C T HMHA1 Intron 0.35 TCGA-F6-A8O3-01 19 11129635 11129635 C A SMARCA4 Missense_Mutation p.T814K 0.41 probably_damaging(1) TCGA-F6-A8O3-01 19 17085906 17085906 C T CPAMD8 Splice_Site p.X737_splice 0.50 TCGA-F6-A8O3-01 1 151641080 151641080 A G SNX27 Missense_Mutation p.N373S 0.39 tolerated(0.13) benign(0.068) TCGA-F6-A8O3-01 1 161143660 161143660 C T B4GALT3 Silent p.K223K 0.12 TCGA-F6-A8O3-01 21 43166847 43166847 C T RIPK4 Missense_Mutation p.R253H 0.40 tolerated(0.2) benign(0.002) TCGA-F6-A8O3-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-F6-A8O3-01 3 164906505 164906505 C T SLITRK3 Missense_Mutation p.C705Y 0.49 tolerated(0.66) probably_damaging(0.996) TCGA-F6-A8O3-01 5 169533529 169533529 G A FOXI1 Missense_Mutation p.D190N 0.25 deleterious(0) probably_damaging(1) TCGA-F6-A8O3-01 5 37046252 37046258 TACAAAA - NIPBL Frame_Shift_Del p.K2182Qfs*13 0.31 TCGA-F6-A8O3-01 5 39394362 39394362 T C DAB2 Missense_Mutation p.K21E 0.49 deleterious(0) possibly_damaging(0.818) TCGA-F6-A8O3-01 6 29638125 29638125 C T MOG Silent p.P220P 0.04 TCGA-F6-A8O3-01 7 124503468 124503468 T A POT1 Missense_Mutation p.Y161F 0.39 tolerated(0.57) benign(0.002) TCGA-F6-A8O3-01 7 124503470 124503470 C A POT1 Missense_Mutation p.Q160H 0.39 tolerated(0.08) probably_damaging(0.975) TCGA-F6-A8O3-01 8 38274849 38274849 G T FGFR1 Missense_Mutation p.N577K 0.44 deleterious(0) probably_damaging(1) TCGA-F6-A8O3-01 9 368051 368051 C A DOCK8 Missense_Mutation p.N571K 0.09 deleterious(0) probably_damaging(1) TCGA-F6-A8O3-01 9 74332990 74332990 C T TMEM2 Missense_Mutation p.R758Q 0.36 tolerated(0.07) benign(0.01) TCGA-F6-A8O4-01 10 133758825 133758825 A - PPP2R2D Frame_Shift_Del p.M197Wfs*4 0.30 TCGA-F6-A8O4-01 11 101868389 101868389 G A KIAA1377 3'UTR 0.07 TCGA-F6-A8O4-01 11 102647464 102647464 G T MMP10 Silent p.S222S 0.32 TCGA-F6-A8O4-01 11 18051095 18051095 C T TPH1 Missense_Mutation p.R145Q 0.04 deleterious(0) probably_damaging(1) TCGA-F6-A8O4-01 11 7067952 7067952 C A NLRP14 Missense_Mutation p.T671K 0.18 tolerated(0.15) benign(0.245) TCGA-F6-A8O4-01 11 72290400 72290400 G A PDE2A Missense_Mutation p.R762W 0.07 deleterious(0) probably_damaging(0.999) TCGA-F6-A8O4-01 13 92560208 92560208 T C GPC5 Missense_Mutation p.V433A 0.06 tolerated(0.12) benign(0.068) TCGA-F6-A8O4-01 14 26917177 26917178 - G NOVA1 Frame_Shift_Ins p.Q504Hfs*55 0.26 TCGA-F6-A8O4-01 14 77984443 77984443 T C SPTLC2 Missense_Mutation p.I503V 0.36 deleterious(0.02) benign(0.14) TCGA-F6-A8O4-01 15 62535627 62535627 G A AC126323.1 RNA 0.31 TCGA-F6-A8O4-01 15 63967167 63967167 C T HERC1 Missense_Mutation p.G2407D 0.32 benign(0.047) TCGA-F6-A8O4-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.34 tolerated(0.11) benign(0.308) TCGA-F6-A8O4-01 17 7578538 7578538 T C TP53 Missense_Mutation p.N131S 0.35 deleterious(0) probably_damaging(0.947) TCGA-F6-A8O4-01 19 1788945 1788945 C T ATP8B3 Missense_Mutation p.S1007N 0.18 tolerated(0.08) benign(0.058) TCGA-F6-A8O4-01 19 55495054 55495054 C T NLRP2 Missense_Mutation p.P663L 0.30 tolerated(0.6) benign(0.001) TCGA-F6-A8O4-01 1 111891191 111891191 A G PIFO Silent p.K104K 0.05 TCGA-F6-A8O4-01 1 156262835 156262835 T C C1orf85 Silent p.%3D 0.40 TCGA-F6-A8O4-01 1 167097663 167097663 G A DUSP27 Missense_Mutation p.G1099R 0.22 deleterious(0.04) benign(0.21) TCGA-F6-A8O4-01 1 67861879 67861879 G A IL12RB2 3'UTR 0.38 TCGA-F6-A8O4-01 1 68512673 68512673 C T DIRAS3 Missense_Mutation p.R103H 0.38 tolerated(0.07) possibly_damaging(0.693) TCGA-F6-A8O4-01 22 41863526 41863526 G A PHF5A Missense_Mutation p.R57C 0.30 deleterious(0) probably_damaging(0.971) TCGA-F6-A8O4-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-F6-A8O4-01 2 219028901 219028901 T C CXCR1 Missense_Mutation p.N345S 0.40 tolerated(0.22) unknown(0) TCGA-F6-A8O4-01 3 197670672 197670672 C T IQCG Missense_Mutation p.E87K 0.36 tolerated(0.06) benign(0.206) TCGA-F6-A8O4-01 3 2967440 2967440 G A CNTN4 Silent p.R445R 0.05 TCGA-F6-A8O4-01 3 38888474 38888474 C T SCN11A Missense_Mutation p.G1696D 0.38 tolerated(0.62) benign(0) TCGA-F6-A8O4-01 5 112176256 112176256 A C APC Silent p.T1655T 0.47 TCGA-F6-A8O4-01 5 1221296 1221296 C A SLC6A19 Silent p.G523G 0.09 TCGA-F6-A8O4-01 5 179998424 179998424 G A CNOT6 Missense_Mutation p.D485N 0.38 tolerated(0.11) benign(0.014) TCGA-F6-A8O4-01 6 49936524 49936524 G A DEFB113 Missense_Mutation p.R39C 0.07 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-F6-A8O4-01 7 64168484 64168484 T C ZNF107 Missense_Mutation p.I601T 0.45 tolerated(0.07) probably_damaging(0.97) TCGA-F6-A8O4-01 7 75959375 75959375 T C YWHAG Missense_Mutation p.K88R 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.747) TCGA-F6-A8O4-01 8 37729690 37729690 G A RAB11FIP1 Missense_Mutation p.A877V 0.10 tolerated(0.62) benign(0.001) TCGA-F6-A8O4-01 9 74489680 74489680 T C ABHD17B Missense_Mutation p.Q106R 0.43 deleterious(0.01) benign(0.328) TCGA-F6-A8O4-01 9 82336786 82336786 C T TLE4 Missense_Mutation p.H657Y 0.18 tolerated(0.12) benign(0.044) TCGA-F6-A8O4-01 9 86284200 86284200 T C UBQLN1 Missense_Mutation p.Q383R 0.24 deleterious(0) possibly_damaging(0.885) TCGA-F6-A8O4-01 9 97321218 97321218 C T FBP2 3'UTR 0.29 TCGA-F6-A8O4-01 X 1409341 1409341 C T CSF2RA Silent p.N195N 0.33 TCGA-F6-A8O4-01 X 76939666 76939669 TCAA - ATRX Frame_Shift_Del p.I360Rfs*6 0.81 TCGA-FG-5962-01 11 103870852 103870852 G A PDGFD Nonsense_Mutation p.Q86* 0.06 TCGA-FG-5962-01 11 1075719 1075719 G A MUC2 Missense_Mutation p.D49N 0.15 probably_damaging(1) TCGA-FG-5962-01 11 110134885 110134885 A C RDX Silent p.V89V 0.11 TCGA-FG-5962-01 11 111487048 111487048 A C SIK2 Missense_Mutation p.M73L 0.12 tolerated(1) benign(0.009) TCGA-FG-5962-01 11 55798086 55798086 C G OR5AS1 Missense_Mutation p.S64R 0.11 tolerated(0.1) possibly_damaging(0.888) TCGA-FG-5962-01 12 122190038 122190038 G A TMEM120B Missense_Mutation p.A124T 0.10 tolerated(0.07) probably_damaging(0.982) TCGA-FG-5962-01 12 51470329 51470329 C T CSRNP2 Missense_Mutation p.G6S 0.05 tolerated_low_confidence(1) benign(0.002) TCGA-FG-5962-01 13 20638648 20638648 A G ZMYM2 Missense_Mutation p.E1032G 0.21 tolerated(0.14) probably_damaging(0.995) TCGA-FG-5962-01 14 105353382 105353382 G A CEP170B Missense_Mutation p.E936K 0.40 tolerated(0.25) possibly_damaging(0.674) TCGA-FG-5962-01 15 28389059 28389059 T C HERC2 Missense_Mutation p.N3793S 0.03 benign(0) TCGA-FG-5962-01 15 28460828 28460828 G A HERC2 Missense_Mutation p.T2050M 0.41 benign(0.118) TCGA-FG-5962-01 15 62201315 62201315 T C VPS13C Missense_Mutation p.I2952V 0.08 tolerated(0.06) benign(0.126) TCGA-FG-5962-01 15 63901366 63901366 T C HERC1 Missense_Mutation p.I4834V 0.20 probably_damaging(0.986) TCGA-FG-5962-01 16 21261086 21261086 A G ANKS4B Missense_Mutation p.T67A 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-FG-5962-01 16 31121057 31121057 C T BCKDK Missense_Mutation p.R110C 0.10 deleterious(0) probably_damaging(0.998) TCGA-FG-5962-01 17 17948505 17948505 T G GID4 Missense_Mutation p.I161M 0.14 deleterious(0) probably_damaging(0.999) TCGA-FG-5962-01 17 48264128 48264128 G A COL1A1 Silent p.L1229L 0.04 TCGA-FG-5962-01 17 62080305 62080305 G A C17orf72 3'Flank 0.11 TCGA-FG-5962-01 17 72832630 72832630 G A TMEM104 Missense_Mutation p.G432D 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-FG-5962-01 19 42799059 42799059 C T CIC Missense_Mutation p.R1515C 0.11 probably_damaging(0.973) TCGA-FG-5962-01 19 7833752 7833752 C T CLEC4M Missense_Mutation p.P360S 0.11 deleterious(0) probably_damaging(0.997) TCGA-FG-5962-01 1 152193268 152193268 C T HRNR Silent p.S279S 0.06 TCGA-FG-5962-01 1 171501521 171501521 G - PRRC2C Frame_Shift_Del p.G430Afs*9 0.09 TCGA-FG-5962-01 1 232941483 232941483 C T MAP10 Silent p.L238L 0.12 TCGA-FG-5962-01 1 27059237 27059237 A - ARID1A Frame_Shift_Del p.E626Kfs*3 0.15 TCGA-FG-5962-01 20 21336757 21336757 G A XRN2 Missense_Mutation p.G687E 0.11 deleterious(0.03) benign(0.356) TCGA-FG-5962-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-5962-01 2 32891715 32891715 A T TTC27 Missense_Mutation p.K273N 0.11 deleterious(0) probably_damaging(0.997) TCGA-FG-5962-01 2 55544946 55544946 G T CCDC88A Missense_Mutation p.T1118N 0.13 deleterious(0) possibly_damaging(0.761) TCGA-FG-5962-01 3 111718245 111718245 C T TAGLN3 5'UTR 0.52 TCGA-FG-5962-01 3 120489647 120489647 G A GTF2E1 Missense_Mutation p.R174H 0.13 deleterious(0) probably_damaging(0.986) TCGA-FG-5962-01 3 178951958 178951958 A G PIK3CA Missense_Mutation p.M1005V 0.09 deleterious(0.01) possibly_damaging(0.771) TCGA-FG-5962-01 4 83557863 83557863 T C SCD5 Missense_Mutation p.Y228C 0.09 deleterious(0) probably_damaging(0.987) TCGA-FG-5962-01 5 14769169 14769169 A G ANKH Silent p.F76F 0.15 TCGA-FG-5962-01 5 149755650 149755650 A G TCOF1 Silent p.K633K 0.06 TCGA-FG-5962-01 5 156566369 156566369 T C MED7 Missense_Mutation p.N25S 0.10 deleterious(0.04) possibly_damaging(0.838) TCGA-FG-5962-01 5 52402983 52402983 A G MOCS2 Missense_Mutation p.S8P 0.09 tolerated_low_confidence(0.17) unknown(0) TCGA-FG-5962-01 5 67589217 67589222 TTGAAT - PIK3R1 In_Frame_Del p.E403_L404del 0.42 TCGA-FG-5962-01 5 95119548 95119548 C T RHOBTB3 Nonsense_Mutation p.Q502* 0.07 TCGA-FG-5962-01 6 160952755 160952755 G A LPA 3'UTR 0.11 TCGA-FG-5962-01 6 79713469 79713469 C G PHIP Missense_Mutation p.G544A 0.11 deleterious(0) probably_damaging(0.987) TCGA-FG-5962-01 8 101534835 101534835 T A ANKRD46 Missense_Mutation p.Y212F 0.13 deleterious_low_confidence(0) benign(0.153) TCGA-FG-5962-01 8 117869555 117869555 A C RAD21 Missense_Mutation p.D213E 0.11 tolerated(0.78) benign(0.015) TCGA-FG-5962-01 9 139412675 139412675 T C NOTCH1 Missense_Mutation p.N390S 0.17 tolerated(0.05) benign(0.052) TCGA-FG-5962-01 9 22823377 22823377 A G RP11-399D6.2 RNA 0.04 TCGA-FG-5962-01 X 107402954 107402954 C T COL4A6 Missense_Mutation p.R1518H 0.25 benign(0.246) TCGA-FG-5962-01 X 117959418 117959418 G A ZCCHC12 Missense_Mutation p.V71I 0.18 tolerated(0.2) benign(0.093) TCGA-FG-5962-01 X 152821834 152821834 C T ATP2B3 Silent p.L762L 0.15 TCGA-FG-5963-01 11 64120928 64120928 G C CCDC88B Missense_Mutation p.E1265Q 0.26 deleterious(0.01) benign(0.082) TCGA-FG-5963-01 12 14794127 14794127 G A GUCY2C Missense_Mutation p.R653C 0.23 deleterious(0) probably_damaging(0.999) TCGA-FG-5963-01 14 52922041 52922041 C T TXNDC16 Splice_Site p.X614_splice 0.25 TCGA-FG-5963-01 15 42676717 42676717 G T CAPN3 Missense_Mutation p.A116S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-FG-5963-01 15 99434555 99434555 G A IGF1R Missense_Mutation p.M214I 0.35 tolerated(0.18) benign(0.05) TCGA-FG-5963-01 17 10442867 10442867 G A MYH2 Missense_Mutation p.A387V 0.42 tolerated(0.21) benign(0.021) TCGA-FG-5963-01 17 18874945 18874945 G A FAM83G Silent p.N733N 0.19 TCGA-FG-5963-01 17 29677227 29677227 C T NF1 Nonsense_Mutation p.R2450* 0.21 TCGA-FG-5963-01 17 29683983 29683984 - A NF1 Frame_Shift_Ins p.R2583Efs*13 0.15 TCGA-FG-5963-01 17 35580444 35580444 C T ACACA Missense_Mutation p.A1185T 0.14 deleterious(0) benign(0.423) TCGA-FG-5963-01 17 42455842 42455842 A C ITGA2B Missense_Mutation p.V661G 0.18 tolerated(0.15) benign(0.073) TCGA-FG-5963-01 17 7578458 7578458 G C TP53 Missense_Mutation p.R158G 0.35 deleterious(0) probably_damaging(0.994) TCGA-FG-5963-01 18 32677539 32677539 G T MAPRE2 Missense_Mutation p.R127L 0.17 deleterious(0.04) possibly_damaging(0.758) TCGA-FG-5963-01 18 46812851 46812851 G A DYM Missense_Mutation p.A300V 0.13 tolerated(0.51) benign(0.002) TCGA-FG-5963-01 19 55107882 55107882 G A LILRA1 Missense_Mutation p.R396K 0.19 deleterious(0.02) possibly_damaging(0.868) TCGA-FG-5963-01 1 152279713 152279713 C T FLG Missense_Mutation p.G2550D 0.22 probably_damaging(0.948) TCGA-FG-5963-01 1 205814452 205814452 C G PM20D1 Splice_Site p.X163_splice 0.06 TCGA-FG-5963-01 22 50943889 50943889 C A LMF2 Missense_Mutation p.V332L 0.18 tolerated(0.06) benign(0.128) TCGA-FG-5963-01 2 102503626 102503626 A G MAP4K4 Missense_Mutation p.Y1088C 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FG-5963-01 2 219418446 219418446 A G USP37 Missense_Mutation p.L53P 0.06 deleterious(0) probably_damaging(1) TCGA-FG-5963-01 2 8958894 8958894 G A KIDINS220 Silent p.A46A 0.21 TCGA-FG-5963-01 3 123444812 123444812 G A MYLK Missense_Mutation p.R544W 0.36 deleterious(0.03) benign(0.109) TCGA-FG-5963-01 3 124449455 124449455 G T UMPS Missense_Mutation p.R46L 0.24 tolerated(0.07) benign(0.049) TCGA-FG-5963-01 3 56627603 56627603 A G CCDC66 Missense_Mutation p.T385A 0.16 tolerated(0.38) benign(0.018) TCGA-FG-5963-01 7 74146970 74146970 T A GTF2I Missense_Mutation p.L424H 0.13 deleterious(0.05) probably_damaging(0.992) TCGA-FG-5963-01 8 139636001 139636001 C T COL22A1 Missense_Mutation p.G1249R 0.16 unknown(0) TCGA-FG-5963-01 X 47920207 47920207 C A ZNF630 Missense_Mutation p.V45F 0.64 tolerated(0.09) possibly_damaging(0.48) TCGA-FG-5963-01 X 51488255 51488255 T A GSPT2 Missense_Mutation p.D511E 0.47 tolerated(0.1) benign(0) TCGA-FG-5963-01 X 76813115 76813115 C T ATRX Missense_Mutation p.G2169E 0.43 probably_damaging(0.971) TCGA-FG-5964-01 10 24825812 24825812 A T KIAA1217 Missense_Mutation p.K1175M 0.09 deleterious(0) probably_damaging(0.999) TCGA-FG-5964-01 10 24833960 24833960 C T KIAA1217 Silent p.A1754A 0.06 TCGA-FG-5964-01 10 5144389 5144389 C T AKR1C3 Nonsense_Mutation p.R223* 0.22 TCGA-FG-5964-01 11 66392068 66392068 C T RBM14 Missense_Mutation p.P241S 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-FG-5964-01 12 123738357 123738359 AAG - C12orf65 In_Frame_Del p.K47del 0.17 TCGA-FG-5964-01 12 56721813 56721813 T - PAN2 Frame_Shift_Del p.N206Ifs*15 0.17 TCGA-FG-5964-01 12 57588464 57588464 G A LRP1 Missense_Mutation p.E2725K 0.22 benign(0.343) TCGA-FG-5964-01 13 30341404 30341406 ACA - UBL3 In_Frame_Del p.C114del 0.22 TCGA-FG-5964-01 14 104143843 104143843 A G KLC1 Missense_Mutation p.M491V 0.32 tolerated(0.36) benign(0.005) TCGA-FG-5964-01 14 19553812 19553812 G A POTEG Silent p.R132R 0.04 TCGA-FG-5964-01 14 24709491 24709493 TAA - TINF2 In_Frame_Del p.L369del 0.22 TCGA-FG-5964-01 14 75017767 75017767 C A LTBP2 Missense_Mutation p.Q562H 0.06 deleterious(0) probably_damaging(0.999) TCGA-FG-5964-01 15 52720613 52720613 G C MYO5A Missense_Mutation p.L98V 0.32 tolerated(0.5) probably_damaging(0.999) TCGA-FG-5964-01 16 1510460 1510460 C T CLCN7 Missense_Mutation p.A185T 0.33 tolerated(0.35) benign(0.006) TCGA-FG-5964-01 16 89261356 89261356 G A CDH15 Silent p.A746A 0.33 TCGA-FG-5964-01 17 3119138 3119138 C T OR1A1 Missense_Mutation p.S75L 0.27 deleterious(0) probably_damaging(0.999) TCGA-FG-5964-01 17 40832563 40832563 T C CCR10 Missense_Mutation p.K33E 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-FG-5964-01 17 61909367 61909367 T C PSMC5 3'UTR 0.36 TCGA-FG-5964-01 19 39879756 39879758 TCT - PAF1 In_Frame_Del p.K181del 0.28 TCGA-FG-5964-01 19 42797980 42797981 TG - CIC Frame_Shift_Del p.V1345Gfs*16 0.39 TCGA-FG-5964-01 1 177247827 177247827 G A BRINP2 Missense_Mutation p.V381M 0.32 tolerated(0.21) benign(0.002) TCGA-FG-5964-01 1 206243553 206243553 C T C1orf186 5'UTR 0.08 TCGA-FG-5964-01 1 228529314 228529314 G A OBSCN Nonsense_Mutation p.W6968* 0.19 TCGA-FG-5964-01 1 232607260 232607260 C T SIPA1L2 Silent p.R700R 0.26 TCGA-FG-5964-01 1 243354486 243354488 AGG - CEP170 In_Frame_Del p.P314del 0.12 TCGA-FG-5964-01 20 2635113 2635115 AAG - NOP56 In_Frame_Del p.K90del 0.20 TCGA-FG-5964-01 22 50956005 50956005 G A NCAPH2 Splice_Site p.X89_splice 0.29 TCGA-FG-5964-01 2 119739756 119739756 C T MARCO Missense_Mutation p.P309L 0.36 tolerated(0.06) unknown(0) TCGA-FG-5964-01 2 201726490 201726493 CTTC - CLK1 Frame_Shift_Del p.K74Dfs*30 0.23 TCGA-FG-5964-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-5964-01 2 73836722 73836722 A G ALMS1 Missense_Mutation p.K4163E 0.15 probably_damaging(0.999) TCGA-FG-5964-01 3 121351926 121351926 C A HCLS1 Missense_Mutation p.Q332H 0.21 tolerated(0.07) benign(0.216) TCGA-FG-5964-01 4 122782768 122782768 G A BBS7 Missense_Mutation p.P78S 0.71 tolerated(0.07) benign(0.234) TCGA-FG-5964-01 4 26426086 26426088 TTT - RBPJ In_Frame_Del p.F221del 0.23 TCGA-FG-5964-01 5 96077000 96077000 G A CAST Missense_Mutation p.A276T 0.42 deleterious(0) possibly_damaging(0.715) TCGA-FG-5964-01 6 133045776 133045776 A G VNN3 3'UTR 0.32 TCGA-FG-5964-01 6 143823182 143823182 T C FUCA2 Silent p.V347V 0.43 TCGA-FG-5964-01 6 26045799 26045799 G A HIST1H3C Missense_Mutation p.R54H 0.12 tolerated_low_confidence(0.05) benign(0.18) TCGA-FG-5964-01 6 30587286 30587287 TT - MRPS18B Frame_Shift_Del p.C33Hfs*6 0.14 TCGA-FG-5964-01 7 107808830 107808830 T C NRCAM Missense_Mutation p.R1069G 0.14 tolerated(0.4) benign(0) TCGA-FG-5964-01 7 12728267 12728268 - T ARL4A Frame_Shift_Ins p.I131Yfs*4 0.09 TCGA-FG-5964-01 7 131189169 131189171 CTT - PODXL In_Frame_Del p.K526del 0.10 TCGA-FG-5964-01 7 27282671 27282671 G C EVX1 Missense_Mutation p.V8L 0.27 tolerated(0.12) benign(0.001) TCGA-FG-5964-01 7 6859486 6859486 A G CCZ1B Silent p.Y203Y 0.22 TCGA-FG-5964-01 8 61484623 61484623 G A RAB2A Missense_Mutation p.R46Q 0.22 deleterious(0.01) probably_damaging(0.936) TCGA-FG-5964-01 8 77776374 77776377 CAAT - ZFHX4 Frame_Shift_Del p.I3476Nfs*4 0.37 TCGA-FG-5964-01 8 94745644 94745648 TTAAC - RBM12B Frame_Shift_Del p.K997Nfs*10 0.29 TCGA-FG-5964-01 X 117959196 117959196 T A ZCCHC12 5'UTR 0.47 TCGA-FG-5964-01 X 140785767 140785767 A G SPANXD Missense_Mutation p.I50T 0.62 tolerated(0.26) benign(0.006) TCGA-FG-5965-01 10 122664218 122664218 G C WDR11 Missense_Mutation p.D1030H 0.08 deleterious(0) probably_damaging(0.996) TCGA-FG-5965-01 10 27524038 27524038 A C ACBD5 Silent p.P95P 0.08 TCGA-FG-5965-01 11 4944710 4944710 G A OR51G1 Missense_Mutation p.P287L 0.25 deleterious(0) benign(0.434) TCGA-FG-5965-01 11 60230557 60230557 G A MS4A1 Missense_Mutation p.C81Y 0.12 tolerated(0.19) probably_damaging(0.983) TCGA-FG-5965-01 12 32791723 32791723 C G FGD4 Silent p.A679A 0.19 TCGA-FG-5965-01 12 5687543 5687543 G T ANO2 Missense_Mutation p.T792N 0.17 deleterious(0) possibly_damaging(0.466) TCGA-FG-5965-01 12 6494301 6494301 C T LTBR Missense_Mutation p.P103S 0.11 tolerated(0.77) possibly_damaging(0.531) TCGA-FG-5965-01 13 73505357 73505357 A G PIBF1 Silent p.L595L 0.17 TCGA-FG-5965-01 14 57270920 57270920 C T OTX2 Missense_Mutation p.E87K 0.13 deleterious(0.02) probably_damaging(0.962) TCGA-FG-5965-01 14 70991445 70991445 G A ADAM20 Silent p.I60I 0.39 TCGA-FG-5965-01 15 74654540 74654540 G A CYP11A1 Intron 0.36 TCGA-FG-5965-01 15 90771616 90771616 A G SEMA4B Missense_Mutation p.E752G 0.13 tolerated(0.38) probably_damaging(0.933) TCGA-FG-5965-01 16 26147050 26147050 T A HS3ST4 Silent p.I284I 0.16 TCGA-FG-5965-01 17 4445912 4445912 G A MYBBP1A Missense_Mutation p.P1006L 0.16 deleterious(0) probably_damaging(1) TCGA-FG-5965-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.72 deleterious(0) probably_damaging(0.998) TCGA-FG-5965-01 19 11304446 11304446 C T KANK2 Missense_Mutation p.G104S 0.27 tolerated(0.1) probably_damaging(1) TCGA-FG-5965-01 19 14749062 14749062 T C EMR3 Missense_Mutation p.T447A 0.36 deleterious(0.04) benign(0.248) TCGA-FG-5965-01 19 38958451 38958451 G A RYR1 Missense_Mutation p.R1127H 0.13 probably_damaging(0.93) TCGA-FG-5965-01 19 54445512 54445512 C T CACNG7 Missense_Mutation p.P265S 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.493) TCGA-FG-5965-01 1 154942867 154942867 G C SHC1 Missense_Mutation p.L46V 0.36 tolerated(0.19) possibly_damaging(0.801) TCGA-FG-5965-01 1 159557756 159557756 G A APCS Silent p.L15L 0.14 TCGA-FG-5965-01 1 228504445 228504445 G A OBSCN Missense_Mutation p.A5398T 0.17 benign(0.005) TCGA-FG-5965-01 1 28339787 28339787 T C EYA3 Missense_Mutation p.I202V 0.13 tolerated(0.55) benign(0.124) TCGA-FG-5965-01 1 7723708 7723708 C G CAMTA1 Missense_Mutation p.N367K 0.32 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-FG-5965-01 22 20939211 20939211 G A MED15 Missense_Mutation p.V625I 0.35 tolerated(0.18) possibly_damaging(0.771) TCGA-FG-5965-01 22 37213061 37213061 T C PVALB Intron 0.33 TCGA-FG-5965-01 2 10928839 10928839 T C PDIA6 Missense_Mutation p.K328E 0.18 deleterious(0) possibly_damaging(0.877) TCGA-FG-5965-01 2 138425373 138425373 G A THSD7B Missense_Mutation p.V1564I 0.17 deleterious(0.02) unknown(0) TCGA-FG-5965-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-5965-01 2 211525381 211525381 T A CPS1 Splice_Site p.X1315_splice 0.39 TCGA-FG-5965-01 2 47613720 47613720 A G EPCAM Missense_Mutation p.M305V 0.15 deleterious(0.01) possibly_damaging(0.472) TCGA-FG-5965-01 3 129695936 129695936 C T TRH Silent p.A202A 0.18 TCGA-FG-5965-01 3 130613588 130613588 C T ATP2C1 Intron 0.05 TCGA-FG-5965-01 3 50417431 50417431 C T CACNA2D2 Silent p.S287S 0.41 TCGA-FG-5965-01 6 105573323 105573323 T C BVES Missense_Mutation p.Y161C 0.17 deleterious(0) probably_damaging(1) TCGA-FG-5965-01 6 163984476 163984476 C G QKI Missense_Mutation p.A220G 0.14 tolerated(0.14) probably_damaging(0.985) TCGA-FG-5965-01 6 30576891 30576891 T - PPP1R10 Frame_Shift_Del p.I53Ffs*27 0.23 TCGA-FG-5965-01 6 74183326 74183326 G A MTO1 Silent p.P258P 0.35 TCGA-FG-5965-01 6 85446382 85446382 T A TBX18 3'UTR 0.19 TCGA-FG-5965-01 8 100454689 100454689 A G VPS13B Missense_Mutation p.I1091V 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.651) TCGA-FG-5965-01 8 10465064 10465064 C T RP1L1 Missense_Mutation p.A2182T 0.15 unknown(0) TCGA-FG-5965-01 8 19811731 19811731 A C LPL Missense_Mutation p.R214S 0.15 deleterious(0) probably_damaging(0.976) TCGA-FG-5965-01 9 77752522 77752522 T G OSTF1 Silent p.L159L 0.40 TCGA-FG-5965-01 X 123020096 123020096 G C XIAP Missense_Mutation p.G195A 0.11 tolerated(0.25) benign(0.015) TCGA-FG-5965-01 X 18189326 18189326 T A BEND2 Splice_Site p.X661_splice 0.20 TCGA-FG-5965-01 X 48682404 48682404 G T HDAC6 Missense_Mutation p.G1126C 0.31 deleterious(0) probably_damaging(0.991) TCGA-FG-5965-01 X 48972594 48972594 G A GPKOW Missense_Mutation p.R333W 0.18 deleterious(0) probably_damaging(0.999) TCGA-FG-5965-01 X 69424364 69424364 T A DGAT2L6 Missense_Mutation p.V286D 0.15 deleterious(0) probably_damaging(0.992) TCGA-FG-5965-01 X 76889172 76889172 A T ATRX Nonsense_Mutation p.L1613* 0.27 TCGA-FG-5965-01 X 78427488 78427488 G C GPR174 Missense_Mutation p.M328I 0.10 tolerated(0.78) benign(0) TCGA-FG-5965-01 X 83403057 83403057 A G RPS6KA6 Silent p.S111S 0.37 TCGA-FG-6688-01 10 115401191 115401191 C T NRAP Missense_Mutation p.R419H 0.20 tolerated(1) benign(0.001) TCGA-FG-6688-01 11 130341228 130341228 G A ADAMTS15 Silent p.G676G 0.15 TCGA-FG-6688-01 11 46098353 46098356 TTTC - PHF21A Frame_Shift_Del p.K34Nfs*13 0.13 TCGA-FG-6688-01 11 86519582 86519582 C A PRSS23 Missense_Mutation p.D299E 0.12 tolerated(0.67) benign(0.016) TCGA-FG-6688-01 11 8940912 8940912 T - AKIP1 Frame_Shift_Del p.I173Kfs*17 0.18 TCGA-FG-6688-01 12 101750464 101750464 C G UTP20 Missense_Mutation p.L1843V 0.09 deleterious(0) probably_damaging(0.946) TCGA-FG-6688-01 12 57989740 57989740 C T PIP4K2C Missense_Mutation p.R147W 0.18 tolerated(0.06) benign(0.086) TCGA-FG-6688-01 12 6702730 6702730 T C CHD4 Missense_Mutation p.N789S 0.15 deleterious(0) possibly_damaging(0.874) TCGA-FG-6688-01 12 7883393 7883393 G A CLEC4C Missense_Mutation p.T166I 0.15 deleterious(0.04) probably_damaging(0.91) TCGA-FG-6688-01 13 21013857 21013859 TCT - CRYL1 In_Frame_Del p.K104del 0.16 TCGA-FG-6688-01 13 25479612 25479612 C G CENPJ Missense_Mutation p.R855T 0.13 tolerated(0.41) benign(0.002) TCGA-FG-6688-01 13 48955530 48955533 ATTT - RB1 Frame_Shift_Del p.H549Qfs*61 0.24 TCGA-FG-6688-01 14 38724284 38724284 G A CLEC14A Missense_Mutation p.P315L 0.14 tolerated(0.06) benign(0.006) TCGA-FG-6688-01 14 42355895 42355895 C T LRFN5 Missense_Mutation p.R23C 0.11 deleterious(0) probably_damaging(0.998) TCGA-FG-6688-01 14 60212786 60212786 C T RTN1 Missense_Mutation p.D219N 0.16 tolerated(0.21) benign(0.001) TCGA-FG-6688-01 15 100996220 100996220 A T CERS3 Missense_Mutation p.Y293N 0.16 tolerated(0.29) benign(0.424) TCGA-FG-6688-01 15 35274299 35274299 G C ZNF770 Nonsense_Mutation p.S446* 0.14 TCGA-FG-6688-01 15 85467219 85467219 G A SLC28A1 Missense_Mutation p.E321K 0.13 deleterious(0.03) possibly_damaging(0.866) TCGA-FG-6688-01 15 94943169 94943169 C G MCTP2 Missense_Mutation p.T637S 0.14 deleterious(0.05) benign(0.164) TCGA-FG-6688-01 16 12571690 12571690 C G SNX29 Missense_Mutation p.P718A 0.14 deleterious(0) possibly_damaging(0.577) TCGA-FG-6688-01 16 50347883 50347883 C G ADCY7 Silent p.P922P 0.15 TCGA-FG-6688-01 16 55361633 55361633 C G IRX6 Silent p.A183A 0.16 TCGA-FG-6688-01 16 70902514 70902514 C T HYDIN Missense_Mutation p.V3757I 0.09 possibly_damaging(0.636) TCGA-FG-6688-01 16 89804475 89804475 T A ZNF276 Missense_Mutation p.C556S 0.18 deleterious(0) probably_damaging(0.999) TCGA-FG-6688-01 17 31107759 31107759 C T MYO1D Missense_Mutation p.V47I 0.16 tolerated(0.1) possibly_damaging(0.895) TCGA-FG-6688-01 17 42449681 42449681 G A ITGA2B 3'UTR 0.27 TCGA-FG-6688-01 17 5072170 5072170 C T USP6 Nonsense_Mutation p.R1113* 0.16 TCGA-FG-6688-01 17 55946527 55946527 G A CUEDC1 Missense_Mutation p.S299F 0.15 deleterious(0) probably_damaging(0.947) TCGA-FG-6688-01 17 80400518 80400518 G T C17orf62 3'Flank 0.17 TCGA-FG-6688-01 19 15763404 15763404 A T CYP4F3 Missense_Mutation p.D315V 0.03 deleterious(0) possibly_damaging(0.795) TCGA-FG-6688-01 1 171605340 171605340 C T MYOC Missense_Mutation p.E414K 0.21 tolerated(1) benign(0.044) TCGA-FG-6688-01 1 203832798 203832798 G A SNRPE Missense_Mutation p.R30Q 0.82 tolerated(0.17) benign(0.014) TCGA-FG-6688-01 1 43317456 43317456 G T ZNF691 Missense_Mutation p.G307V 0.10 deleterious(0) probably_damaging(0.917) TCGA-FG-6688-01 20 51872726 51872726 C T TSHZ2 Missense_Mutation p.T910M 0.11 deleterious(0) probably_damaging(0.999) TCGA-FG-6688-01 2 101009737 101009737 C A CHST10 Silent p.G347G 0.12 TCGA-FG-6688-01 2 102957203 102957203 C T IL1RL1 Silent p.D175D 0.19 TCGA-FG-6688-01 2 128341815 128341815 C T MYO7B Missense_Mutation p.H488Y 0.14 deleterious(0.01) possibly_damaging(0.566) TCGA-FG-6688-01 2 179396156 179396156 A G TTN Silent p.Y35062Y 0.21 TCGA-FG-6688-01 2 179585342 179585342 C A TTN Missense_Mutation p.G7716V 0.15 TCGA-FG-6688-01 2 209309554 209309554 C A PTH2R Silent p.I265I 0.17 TCGA-FG-6688-01 2 45616592 45616592 G A SRBD1 Nonsense_Mutation p.R949* 0.18 TCGA-FG-6688-01 2 68413615 68413615 A G PPP3R1 Silent p.F150F 0.13 TCGA-FG-6688-01 3 108773665 108773665 T A MORC1 Nonsense_Mutation p.K414* 0.20 TCGA-FG-6688-01 3 197803763 197803763 G A ANKRD18DP RNA 0.13 TCGA-FG-6688-01 3 38755451 38755451 G A SCN10A Missense_Mutation p.R1268W 0.19 deleterious(0) probably_damaging(0.98) TCGA-FG-6688-01 3 47098400 47098400 G A SETD2 Nonsense_Mutation p.Q2292* 0.14 TCGA-FG-6688-01 3 56026258 56026258 G A ERC2 Silent p.D694D 0.15 TCGA-FG-6688-01 3 68782248 68782248 C T FAM19A4 3'UTR 0.21 TCGA-FG-6688-01 4 165962269 165962269 C T TRIM60 Nonsense_Mutation p.R349* 0.16 TCGA-FG-6688-01 5 140166068 140166068 C T PCDHA1 Missense_Mutation p.R65W 0.19 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-FG-6688-01 5 140176926 140176926 T C PCDHA2 Missense_Mutation p.Y793H 0.22 tolerated_low_confidence(0.82) benign(0) TCGA-FG-6688-01 5 140242135 140242135 G A AC005609.1 3'UTR 0.44 TCGA-FG-6688-01 5 140736510 140736510 C T PCDHGA4 Silent p.S581S 0.16 TCGA-FG-6688-01 5 167921621 167921621 G A RARS Missense_Mutation p.G182E 0.14 deleterious(0) probably_damaging(0.998) TCGA-FG-6688-01 5 35065590 35065590 C T PRLR Silent p.T490T 0.16 TCGA-FG-6688-01 6 116758080 116758080 A C DSE Missense_Mutation p.K817Q 0.12 deleterious_low_confidence(0.04) benign(0.006) TCGA-FG-6688-01 6 31912793 31912793 T A C2 Missense_Mutation p.F689Y 0.20 tolerated(1) benign(0.005) TCGA-FG-6688-01 6 34508917 34508917 G A SPDEF Silent p.L160L 0.44 TCGA-FG-6688-01 6 46655895 46655895 G A TDRD6 Silent p.P10P 0.27 TCGA-FG-6688-01 6 5431389 5431389 A G FARS2 Silent p.Q296Q 0.14 TCGA-FG-6688-01 7 100679593 100679593 A G MUC17 Silent p.L1632L 0.10 TCGA-FG-6688-01 7 128489530 128489530 C T FLNC Silent p.D1699D 0.11 TCGA-FG-6688-01 7 128802337 128802337 G A TSPAN33 Missense_Mutation p.R88H 0.13 deleterious(0) probably_damaging(1) TCGA-FG-6688-01 7 48320993 48320993 T C ABCA13 Missense_Mutation p.M2927T 0.12 benign(0.044) TCGA-FG-6688-01 7 84751240 84751240 A T SEMA3D 5'UTR 0.17 TCGA-FG-6688-01 9 107513272 107513272 C T NIPSNAP3A Silent p.Y32Y 0.13 TCGA-FG-6688-01 9 114371450 114371450 G A LRRC37A5P RNA 0.22 TCGA-FG-6688-01 9 35717307 35717307 C T TLN1 Missense_Mutation p.R765Q 0.21 tolerated(0.43) benign(0.005) TCGA-FG-6688-01 X 153698493 153698493 C T PLXNA3 Missense_Mutation p.R1657W 0.15 deleterious(0) probably_damaging(1) TCGA-FG-6688-01 X 154159063 154159063 G - F8 Frame_Shift_Del p.A1001Vfs*3 0.14 TCGA-FG-6688-01 X 155254994 155254994 G A WASH6P RNA 0.12 TCGA-FG-6688-01 X 16168588 16168588 A G GRPR Missense_Mutation p.T192A 0.20 deleterious(0) possibly_damaging(0.78) TCGA-FG-6688-01 X 29972757 29972757 G T IL1RAPL1 Missense_Mutation p.K440N 0.16 tolerated(0.85) probably_damaging(0.996) TCGA-FG-6688-01 X 34648526 34648526 G T TMEM47 Missense_Mutation p.N150K 0.15 deleterious(0.01) possibly_damaging(0.798) TCGA-FG-6688-01 X 34962764 34962764 G A FAM47B Missense_Mutation p.V606I 0.17 tolerated(1) benign(0.002) TCGA-FG-6688-01 X 54776462 54776462 C T ITIH6 Missense_Mutation p.V1270M 0.24 tolerated(0.21) probably_damaging(0.998) TCGA-FG-6688-01 X 54785300 54785300 C T ITIH6 Missense_Mutation p.G403S 0.26 tolerated(0.12) possibly_damaging(0.632) TCGA-FG-6688-01 X 75003755 75003755 A C MAGEE2 Missense_Mutation p.Y378D 0.12 deleterious(0) probably_damaging(0.998) TCGA-FG-6689-01 11 111865764 111865764 A T DIXDC1 Missense_Mutation p.N486Y 0.34 tolerated(0.08) possibly_damaging(0.575) TCGA-FG-6689-01 11 47264838 47264838 G A ACP2 Silent p.T269T 0.08 TCGA-FG-6689-01 15 69714351 69714351 G A KIF23 Missense_Mutation p.V113M 0.10 deleterious(0) probably_damaging(0.998) TCGA-FG-6689-01 17 19606453 19606453 A G SLC47A2 Missense_Mutation p.L385P 0.05 deleterious(0) benign(0.247) TCGA-FG-6689-01 17 7579346 7579348 AAG - TP53 In_Frame_Del p.F113del 0.33 TCGA-FG-6689-01 17 7579589 7579590 - A TP53 Frame_Shift_Ins p.S33Ffs*10 0.29 TCGA-FG-6689-01 18 72998072 72998072 G A TSHZ1 Missense_Mutation p.G192D 0.10 deleterious(0) probably_damaging(1) TCGA-FG-6689-01 19 10624526 10624526 C T S1PR5 Missense_Mutation p.A388T 0.11 tolerated(0.06) benign(0.001) TCGA-FG-6689-01 20 36953197 36953197 C T BPI Nonsense_Mutation p.R323* 0.05 TCGA-FG-6689-01 20 61428541 61428541 C G MRGBP Silent p.V76V 0.34 TCGA-FG-6689-01 20 8665706 8665706 G A PLCB1 Silent p.S330S 0.07 TCGA-FG-6689-01 21 11038917 11038917 A G BAGE2 RNA 0.06 TCGA-FG-6689-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-6689-01 2 69329991 69329991 G A ANTXR1 Missense_Mutation p.V241M 0.06 deleterious(0) probably_damaging(0.995) TCGA-FG-6689-01 4 13604944 13604944 C T BOD1L1 Missense_Mutation p.E1194K 0.03 probably_damaging(0.958) TCGA-FG-6689-01 4 146813423 146813423 C T ZNF827 Missense_Mutation p.R413H 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-FG-6689-01 5 135510116 135510116 A G SMAD5 Missense_Mutation p.D350G 0.04 deleterious(0) possibly_damaging(0.868) TCGA-FG-6689-01 5 180622600 180622600 C T TRIM7 Missense_Mutation p.E368K 0.20 tolerated(0.88) benign(0.052) TCGA-FG-6689-01 5 39126188 39126188 A G FYB Silent p.L663L 0.46 TCGA-FG-6689-01 6 149959574 149959574 T - KATNA1 Frame_Shift_Del p.N37Tfs*23 0.22 TCGA-FG-6689-01 6 29556539 29556539 G C OR2H2 Missense_Mutation p.G273A 0.04 tolerated(0.31) benign(0.044) TCGA-FG-6689-01 6 30679448 30679448 C T MDC1 Silent p.L708L 0.05 TCGA-FG-6689-01 7 116397529 116397529 T C MET Missense_Mutation p.F634S 0.44 tolerated(0.25) benign(0.014) TCGA-FG-6689-01 8 70513977 70513977 G C SULF1 Missense_Mutation p.G325A 0.03 deleterious(0) probably_damaging(0.996) TCGA-FG-6689-01 8 86244738 86244738 A G CA1 Missense_Mutation p.L165P 0.46 deleterious(0) probably_damaging(1) TCGA-FG-6689-01 X 76912104 76912104 G C ATRX Nonsense_Mutation p.S1387* 0.62 TCGA-FG-6689-01 X 76938860 76938860 C A ATRX Nonsense_Mutation p.G630* 0.16 TCGA-FG-6690-01 10 43089129 43089129 G A ZNF33B Silent p.Y423Y 0.05 TCGA-FG-6690-01 10 89536119 89536119 T G ATAD1 Missense_Mutation p.M217L 0.06 tolerated(0.05) possibly_damaging(0.601) TCGA-FG-6690-01 11 108043929 108043929 A G NPAT Silent p.N594N 0.07 TCGA-FG-6690-01 11 113076288 113076288 G A NCAM1 Silent p.R189R 0.06 TCGA-FG-6690-01 12 52200839 52200839 G A SCN8A Missense_Mutation p.G1857R 0.04 deleterious(0) probably_damaging(0.997) TCGA-FG-6690-01 12 53169301 53169301 C T KRT76 Missense_Mutation p.S229N 0.42 tolerated(1) benign(0.071) TCGA-FG-6690-01 14 103430859 103430859 G A CDC42BPB Silent p.D902D 0.19 TCGA-FG-6690-01 14 20779861 20779861 C T CCNB1IP1 Missense_Mutation p.D228N 0.07 tolerated_low_confidence(0.59) benign(0.006) TCGA-FG-6690-01 14 23354069 23354069 C T REM2 Missense_Mutation p.S97L 0.12 tolerated(0.28) probably_damaging(0.996) TCGA-FG-6690-01 14 52520997 52520997 G A NID2 Silent p.I270I 0.05 TCGA-FG-6690-01 15 23932264 23932264 G A NDN Missense_Mutation p.P34L 0.18 tolerated_low_confidence(0.17) benign(0.001) TCGA-FG-6690-01 15 68643096 68643096 C T ITGA11 Missense_Mutation p.G307R 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-FG-6690-01 15 90246426 90246426 T C WDR93 Intron 0.42 TCGA-FG-6690-01 16 28846974 28846974 T C ATXN2L Silent p.P930P 0.10 TCGA-FG-6690-01 17 10451106 10451106 T A MYH2 Missense_Mutation p.K44N 0.40 deleterious(0.02) benign(0.087) TCGA-FG-6690-01 17 65899913 65899913 G A BPTF Missense_Mutation p.R851Q 0.10 benign(0.241) TCGA-FG-6690-01 17 7577568 7577568 C T TP53 Missense_Mutation p.C238Y 0.38 deleterious(0) probably_damaging(1) TCGA-FG-6690-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.44 TCGA-FG-6690-01 18 21057190 21057190 C A RIOK3 Missense_Mutation p.H434Q 0.44 tolerated(0.1) benign(0.426) TCGA-FG-6690-01 19 11098500 11098500 G A SMARCA4 Missense_Mutation p.A340T 0.61 benign(0.004) TCGA-FG-6690-01 19 1235018 1235018 G A C19orf26 Missense_Mutation p.T146M 0.09 deleterious(0) possibly_damaging(0.676) TCGA-FG-6690-01 19 36054521 36054521 G A ATP4A Missense_Mutation p.A4V 0.17 tolerated_low_confidence(0.17) benign(0.005) TCGA-FG-6690-01 19 9086351 9086351 T A MUC16 Missense_Mutation p.T1822S 0.06 unknown(0) TCGA-FG-6690-01 1 1431191 1431191 G T ATAD3B Silent p.L647L 0.08 TCGA-FG-6690-01 1 16242638 16242638 A G SPEN Missense_Mutation p.N420S 0.05 probably_damaging(0.986) TCGA-FG-6690-01 1 2440330 2440330 G A PANK4 Missense_Mutation p.R760W 0.45 deleterious(0.01) possibly_damaging(0.714) TCGA-FG-6690-01 1 78041829 78041829 G A ZZZ3 Missense_Mutation p.P752L 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-FG-6690-01 1 89448635 89448635 C T RBMXL1 Missense_Mutation p.R292H 0.06 tolerated(0.3) benign(0.017) TCGA-FG-6690-01 20 54573805 54573805 G A CBLN4 Silent p.N138N 0.06 TCGA-FG-6690-01 20 57769660 57769660 G A ZNF831 Missense_Mutation p.A1196T 0.52 tolerated(0.48) benign(0.001) TCGA-FG-6690-01 2 113816991 113816991 G A IL36RN Intron 0.06 TCGA-FG-6690-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-6690-01 3 186917444 186917444 C T RTP1 Silent p.R126R 0.10 TCGA-FG-6690-01 4 48517115 48517115 C T FRYL Missense_Mutation p.V2623I 0.05 tolerated_low_confidence(0.18) benign(0.403) TCGA-FG-6690-01 5 174156254 174156254 G A MSX2 Missense_Mutation p.E158K 0.05 deleterious(0) probably_damaging(1) TCGA-FG-6690-01 6 170112612 170112612 T C PHF10 Missense_Mutation p.Y276C 0.07 tolerated(0.06) probably_damaging(0.984) TCGA-FG-6690-01 6 30954953 30954953 A T MUC21 Missense_Mutation p.E334V 0.04 tolerated(0.24) unknown(0) TCGA-FG-6690-01 6 38976646 38976646 A G DNAH8 Missense_Mutation p.K4207R 0.37 probably_damaging(1) TCGA-FG-6690-01 7 35943911 35943911 A G SEPT7 3'UTR 0.54 TCGA-FG-6690-01 9 117552881 117552881 C T TNFSF15 Missense_Mutation p.E203K 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-FG-6690-01 9 40774421 40774421 A G ZNF658 Missense_Mutation p.V285A 0.04 tolerated(0.24) benign(0.039) TCGA-FG-6690-01 X 109919448 109919448 G C CHRDL1 3'UTR 0.04 TCGA-FG-6690-01 X 76939522 76939522 A T ATRX Nonsense_Mutation p.L409* 0.79 TCGA-FG-6691-01 12 7023292 7023292 G A LRRC23 3'UTR 0.39 TCGA-FG-6691-01 12 7023294 7023294 G C LRRC23 3'UTR 0.39 TCGA-FG-6691-01 14 106757779 106757779 G A IGHV2-26 Silent p.D76D 0.29 TCGA-FG-6691-01 15 74709961 74709961 G A SEMA7A Missense_Mutation p.P174L 0.33 tolerated(0.09) possibly_damaging(0.704) TCGA-FG-6691-01 17 7578444 7578449 GATGGC - TP53 In_Frame_Del p.A161_I162del 0.61 TCGA-FG-6691-01 19 11417342 11417342 G A TSPAN16 Silent p.T171T 0.08 TCGA-FG-6691-01 19 55591837 55591837 T C EPS8L1 Intron 0.31 TCGA-FG-6691-01 19 7806734 7806734 C T CD209 3'UTR 0.25 TCGA-FG-6691-01 1 35334404 35334404 T G DLGAP3 Missense_Mutation p.T763P 0.15 tolerated(0.19) probably_damaging(0.961) TCGA-FG-6691-01 1 42049093 42049093 G A HIVEP3 Missense_Mutation p.T459M 0.19 probably_damaging(0.999) TCGA-FG-6691-01 2 201677928 201677928 T G BZW1 Intron 0.12 TCGA-FG-6691-01 2 209113113 209113113 G T IDH1 Missense_Mutation p.R132S 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FG-6691-01 2 37032683 37032683 C T VIT Missense_Mutation p.T422M 0.15 deleterious(0) probably_damaging(0.996) TCGA-FG-6691-01 2 44021694 44021694 A G DYNC2LI1 Missense_Mutation p.K140R 0.05 tolerated(0.16) benign(0.012) TCGA-FG-6691-01 4 71347534 71347534 G A MUC7 Missense_Mutation p.R358Q 0.07 tolerated_low_confidence(0.47) unknown(0) TCGA-FG-6691-01 5 150639446 150639446 G T GM2A Missense_Mutation p.S71I 0.22 tolerated(0.07) benign(0.428) TCGA-FG-6691-01 7 70853295 70853295 C T WBSCR17 Missense_Mutation p.S166L 0.09 deleterious(0) possibly_damaging(0.494) TCGA-FG-6691-01 8 12595574 12595574 T C LONRF1 Missense_Mutation p.K348R 0.28 tolerated(1) benign(0.005) TCGA-FG-6691-01 X 101909851 101909851 G C GPRASP1 Missense_Mutation p.R337P 0.04 deleterious(0.01) possibly_damaging(0.904) TCGA-FG-6691-01 X 76939673 76939674 - T ATRX Frame_Shift_Ins p.L359Tfs*3 0.34 TCGA-FG-6692-01 10 112262482 112262482 G A DUSP5 Missense_Mutation p.G128E 0.67 deleterious(0) probably_damaging(0.996) TCGA-FG-6692-01 10 76784946 76784949 ACAA - KAT6B Frame_Shift_Del p.T1203Rfs*21 0.56 TCGA-FG-6692-01 10 89624305 89624305 T G PTEN Missense_Mutation p.Y27D 0.61 deleterious(0.04) benign(0.191) TCGA-FG-6692-01 10 95070355 95070355 C T MYOF Missense_Mutation p.D1979N 0.71 deleterious(0) possibly_damaging(0.495) TCGA-FG-6692-01 11 17531254 17531254 G A USH1C Silent p.P554P 0.40 TCGA-FG-6692-01 11 30033223 30033223 C T KCNA4 Missense_Mutation p.D335N 0.44 tolerated(0.09) benign(0.004) TCGA-FG-6692-01 11 48266712 48266712 C T OR4X2 Silent p.C19C 0.40 TCGA-FG-6692-01 11 48286042 48286042 C T OR4X1 Silent p.F210F 0.44 TCGA-FG-6692-01 11 49598093 49598093 G A RP11-707M1.1 RNA 0.31 TCGA-FG-6692-01 11 686996 686996 G A DEAF1 Silent p.G222G 0.15 TCGA-FG-6692-01 11 75898143 75898143 C A WNT11 Missense_Mutation p.C344F 0.46 deleterious(0) probably_damaging(0.998) TCGA-FG-6692-01 12 132466657 132466657 G T EP400 Silent p.P521P 0.35 TCGA-FG-6692-01 12 9246146 9246146 G A A2M Missense_Mutation p.R719C 0.49 tolerated(0.06) benign(0.368) TCGA-FG-6692-01 13 20716908 20716908 C T GJA3 Missense_Mutation p.E174K 0.31 tolerated(0.22) benign(0.025) TCGA-FG-6692-01 14 105222095 105222095 C T SIVA1 Missense_Mutation p.R83C 0.38 deleterious(0) probably_damaging(0.958) TCGA-FG-6692-01 14 106311716 106311716 C T IGHD Missense_Mutation p.R99H 0.44 tolerated_low_confidence(0.06) benign(0.237) TCGA-FG-6692-01 14 24109024 24109024 G A DHRS2 Missense_Mutation p.V114I 0.44 tolerated(1) benign(0.009) TCGA-FG-6692-01 14 42356700 42356700 G A LRFN5 Missense_Mutation p.R291H 0.41 tolerated(0.18) benign(0.279) TCGA-FG-6692-01 14 44975176 44975176 C T FSCB Missense_Mutation p.E339K 0.33 deleterious(0.01) possibly_damaging(0.486) TCGA-FG-6692-01 14 45583422 45583422 G A PRPF39 Silent p.L598L 0.37 TCGA-FG-6692-01 14 74969480 74969480 G A LTBP2 Silent p.P1682P 0.39 TCGA-FG-6692-01 14 88652407 88652407 G A KCNK10 Silent p.H368H 0.50 TCGA-FG-6692-01 14 97326941 97326941 G A VRK1 Missense_Mutation p.E313K 0.39 deleterious(0) possibly_damaging(0.447) TCGA-FG-6692-01 15 23932258 23932258 G A NDN Missense_Mutation p.A36V 0.40 tolerated_low_confidence(0.05) benign(0.048) TCGA-FG-6692-01 16 2282496 2282496 C T E4F1 Missense_Mutation p.R217C 0.43 deleterious(0) probably_damaging(0.977) TCGA-FG-6692-01 16 31405625 31405625 G A ITGAD Missense_Mutation p.G34S 0.28 tolerated(0.26) benign(0.039) TCGA-FG-6692-01 16 87678021 87678021 C T JPH3 Silent p.D180D 0.43 TCGA-FG-6692-01 17 10297737 10297737 C T MYH8 Silent p.R1665R 0.42 TCGA-FG-6692-01 17 19316707 19316707 G A RNF112 Missense_Mutation p.G235R 0.42 tolerated(0.15) probably_damaging(0.97) TCGA-FG-6692-01 17 2600045 2600045 A G CLUH Missense_Mutation p.L680P 0.39 tolerated(0.11) possibly_damaging(0.514) TCGA-FG-6692-01 17 40695945 40695945 A G NAGLU Missense_Mutation p.N641D 0.44 deleterious(0.01) possibly_damaging(0.558) TCGA-FG-6692-01 17 56355470 56355470 C T MPO Missense_Mutation p.D308N 0.35 deleterious(0.03) probably_damaging(0.973) TCGA-FG-6692-01 17 56402928 56402928 C T BZRAP1 Silent p.R239R 0.48 TCGA-FG-6692-01 17 58511145 58511145 C T C17orf64 3'Flank 0.36 TCGA-FG-6692-01 17 6348675 6348675 T C FAM64A Missense_Mutation p.L82P 0.50 deleterious(0) probably_damaging(0.992) TCGA-FG-6692-01 17 68171691 68171691 A G KCNJ2 Missense_Mutation p.I171V 0.41 tolerated(0.37) benign(0.446) TCGA-FG-6692-01 17 76991223 76991223 C T CANT1 Missense_Mutation p.G238S 0.38 deleterious(0) probably_damaging(0.963) TCGA-FG-6692-01 17 78354716 78354716 C T RNF213 Missense_Mutation p.P4576S 0.37 probably_damaging(0.971) TCGA-FG-6692-01 17 79526328 79526328 G A NPLOC4 Missense_Mutation p.P595L 0.46 tolerated(0.26) benign(0.193) TCGA-FG-6692-01 18 2940600 2940601 - A LPIN2 Intron 0.23 TCGA-FG-6692-01 18 54424326 54424326 G A WDR7 Silent p.S834S 0.38 TCGA-FG-6692-01 18 61449685 61449685 A T SERPINB7 Missense_Mutation p.N27Y 0.31 deleterious(0) probably_damaging(1) TCGA-FG-6692-01 19 11890886 11890886 G T ZNF441 Nonsense_Mutation p.G83* 0.21 TCGA-FG-6692-01 19 21366713 21366713 G C ZNF431 Missense_Mutation p.R536T 0.27 deleterious(0.01) benign(0.045) TCGA-FG-6692-01 19 31040141 31040141 C T ZNF536 Silent p.G1205G 0.30 TCGA-FG-6692-01 19 43570705 43570705 G T PSG2 3'UTR 0.25 TCGA-FG-6692-01 19 49000820 49000820 C T LMTK3 Missense_Mutation p.R1198K 0.21 unknown(0) TCGA-FG-6692-01 19 50393077 50393077 C T IL4I1 Silent p.E540E 0.27 TCGA-FG-6692-01 19 51175329 51175329 G A SHANK1 Missense_Mutation p.R874C 0.30 possibly_damaging(0.531) TCGA-FG-6692-01 19 54074900 54074900 G A ZNF331 Missense_Mutation p.E18K 0.27 deleterious(0.03) probably_damaging(0.973) TCGA-FG-6692-01 19 5831234 5831234 C T FUT6 3'UTR 0.34 TCGA-FG-6692-01 19 6312225 6312225 G A ACER1 Silent p.L95L 0.28 TCGA-FG-6692-01 19 9204448 9204448 C T OR1M1 Silent p.H176H 0.26 TCGA-FG-6692-01 1 101198155 101198155 A G VCAM1 Silent p.T569T 0.42 TCGA-FG-6692-01 1 150131759 150131759 C T PLEKHO1 3'UTR 0.42 TCGA-FG-6692-01 1 152328212 152328212 G A FLG2 Missense_Mutation p.H684Y 0.38 unknown(0) TCGA-FG-6692-01 1 182544690 182544690 G A RNASEL Missense_Mutation p.P688L 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-FG-6692-01 1 240656344 240656344 G A GREM2 Silent p.F144F 0.39 TCGA-FG-6692-01 1 79392754 79392754 T A ELTD1 Silent p.V300V 0.35 TCGA-FG-6692-01 20 4837591 4837591 C T SLC23A2 3'UTR 0.39 TCGA-FG-6692-01 2 179498031 179498031 C T TTN Silent p.K14323K 0.40 TCGA-FG-6692-01 2 196720560 196720560 T A DNAH7 Missense_Mutation p.Q2857L 0.39 tolerated(0.13) benign(0.016) TCGA-FG-6692-01 2 20403920 20403920 G A SDC1 Missense_Mutation p.P94L 0.31 tolerated(0.1) benign(0.042) TCGA-FG-6692-01 2 209007511 209007511 C T CRYGB Missense_Mutation p.V127M 0.40 deleterious(0.03) probably_damaging(0.926) TCGA-FG-6692-01 2 234360660 234360660 C T DGKD Missense_Mutation p.R740C 0.38 tolerated(0.35) possibly_damaging(0.676) TCGA-FG-6692-01 2 234652378 234652378 C T UGT1A10 Intron 0.36 TCGA-FG-6692-01 2 238303658 238303658 T C COL6A3 Missense_Mutation p.N94S 0.41 possibly_damaging(0.773) TCGA-FG-6692-01 2 77746149 77746149 C T LRRTM4 Silent p.L282L 0.52 TCGA-FG-6692-01 3 156978935 156978935 G A VEPH1 Silent p.T830T 0.37 TCGA-FG-6692-01 3 168838969 168838969 C T MECOM Missense_Mutation p.R213Q 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-FG-6692-01 3 88039884 88039884 T - HTR1F 5'UTR 0.34 TCGA-FG-6692-01 4 146435947 146435947 C T SMAD1 Missense_Mutation p.P61L 0.39 tolerated(0.09) benign(0.209) TCGA-FG-6692-01 4 1824793 1824793 C T LETM1 Silent p.L466L 0.43 TCGA-FG-6692-01 5 121799290 121799290 C T SNCAIP 3'UTR 0.44 TCGA-FG-6692-01 5 140755693 140755693 C T PCDHGA6 Silent p.S681S 0.34 TCGA-FG-6692-01 5 3599597 3599597 G A IRX1 Missense_Mutation p.A179T 0.37 deleterious(0) probably_damaging(0.989) TCGA-FG-6692-01 5 41058282 41058282 G A MROH2B Silent p.H213H 0.36 TCGA-FG-6692-01 5 55178899 55178899 G A IL31RA Missense_Mutation p.R161H 0.34 deleterious(0.01) benign(0.002) TCGA-FG-6692-01 5 73048961 73048961 G A ARHGEF28 Missense_Mutation p.V137M 0.38 tolerated(0.55) benign(0.05) TCGA-FG-6692-01 5 80382758 80382758 C T RASGRF2 Missense_Mutation p.T459M 0.36 deleterious(0.03) probably_damaging(0.983) TCGA-FG-6692-01 6 1961060 1961060 C T GMDS Silent p.V162V 0.40 TCGA-FG-6692-01 6 26463544 26463544 G A BTN2A1 Missense_Mutation p.R168K 0.40 tolerated(0.85) benign(0.071) TCGA-FG-6692-01 6 32188296 32188296 C T NOTCH4 Missense_Mutation p.G349S 0.32 deleterious(0.01) possibly_damaging(0.588) TCGA-FG-6692-01 6 41002808 41002808 G A UNC5CL Silent p.C2C 0.05 TCGA-FG-6692-01 6 63989815 63989815 G A LGSN 3'UTR 0.47 TCGA-FG-6692-01 7 111634282 111634282 A G DOCK4 Missense_Mutation p.F75L 0.29 tolerated(0.32) benign(0.001) TCGA-FG-6692-01 7 142655048 142655048 G A KEL Missense_Mutation p.R180C 0.28 deleterious(0.02) possibly_damaging(0.849) TCGA-FG-6692-01 7 144015372 144015372 C T OR2A1 Missense_Mutation p.S52F 0.13 tolerated(0.52) benign(0.014) TCGA-FG-6692-01 7 150269789 150269789 C T GIMAP4 Missense_Mutation p.R211C 0.32 tolerated(0.09) benign(0.043) TCGA-FG-6692-01 7 34978935 34978935 T A DPY19L1 Silent p.A566A 0.28 TCGA-FG-6692-01 7 43990260 43990260 A G UBE2D4 Missense_Mutation p.I123V 0.22 tolerated_low_confidence(0.08) benign(0.084) TCGA-FG-6692-01 7 44608558 44608558 G A DDX56 Missense_Mutation p.R443W 0.26 deleterious(0) probably_damaging(0.984) TCGA-FG-6692-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.95 deleterious(0.02) probably_damaging(0.974) TCGA-FG-6692-01 8 11414294 11414294 C T BLK Silent p.Y300Y 0.41 TCGA-FG-6692-01 8 121238908 121238908 C T COL14A1 Missense_Mutation p.T636M 0.36 deleterious(0) benign(0.027) TCGA-FG-6692-01 8 139895346 139895346 C T COL22A1 Missense_Mutation p.G24S 0.36 unknown(0) TCGA-FG-6692-01 8 55538303 55538303 G A RP1 Missense_Mutation p.G621R 0.41 tolerated(0.19) benign(0.023) TCGA-FG-6692-01 8 87081703 87081703 C T PSKH2 Missense_Mutation p.R50H 0.36 tolerated(0.26) benign(0.001) TCGA-FG-6692-01 9 93606246 93606246 G A SYK Silent p.R22R 0.37 TCGA-FG-6692-01 X 110002887 110002887 A T CHRDL1 Splice_Site p.X101_splice 0.82 TCGA-FG-6692-01 Y 21759464 21759464 A G RP11-576C2.1 5'Flank 0.90 TCGA-FG-7634-01 10 1405321 1405321 C A ADARB2 Missense_Mutation p.A327S 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-FG-7634-01 10 95381756 95381756 C T PDE6C Missense_Mutation p.A264V 0.37 tolerated(0.07) benign(0.226) TCGA-FG-7634-01 11 51411931 51411931 C T OR4A5 Silent p.A155A 0.40 TCGA-FG-7634-01 12 280470 280470 A T IQSEC3 Intron 0.39 TCGA-FG-7634-01 12 53693542 53693542 C G C12orf10 Silent p.R7R 0.35 TCGA-FG-7634-01 13 67800158 67800158 T C PCDH9 Silent p.Q805Q 0.07 TCGA-FG-7634-01 14 36946257 36946257 G A SFTA3 Silent p.C60C 0.06 TCGA-FG-7634-01 17 33679774 33679774 C T SLFN11 Nonsense_Mutation p.W769* 0.36 TCGA-FG-7634-01 17 37676268 37676268 G A CDK12 Missense_Mutation p.R1008Q 0.27 probably_damaging(0.997) TCGA-FG-7634-01 19 42798840 42798840 G A CIC Missense_Mutation p.R1471Q 0.57 possibly_damaging(0.885) TCGA-FG-7634-01 19 53652555 53652555 G A ZNF347 Silent p.P27P 0.51 TCGA-FG-7634-01 19 55086389 55086389 G A LILRA2 Missense_Mutation p.V182M 0.59 tolerated(0.06) probably_damaging(0.959) TCGA-FG-7634-01 1 159505463 159505463 C T OR10J5 Missense_Mutation p.C112Y 0.44 deleterious(0.01) benign(0.167) TCGA-FG-7634-01 22 23742513 23742513 C T ZDHHC8P1 RNA 0.15 TCGA-FG-7634-01 22 38014515 38014515 C T GGA1 Missense_Mutation p.R89C 0.07 deleterious(0) probably_damaging(1) TCGA-FG-7634-01 22 46790148 46790148 G A CELSR1 Missense_Mutation p.P1952L 0.09 deleterious(0) possibly_damaging(0.895) TCGA-FG-7634-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-7634-01 2 220103270 220103270 G A GLB1L Missense_Mutation p.P392S 0.33 tolerated(0.18) probably_damaging(0.999) TCGA-FG-7634-01 3 124952387 124952387 T - ZNF148 Frame_Shift_Del p.I395Lfs*7 0.44 TCGA-FG-7634-01 3 178916645 178916645 G C PIK3CA Missense_Mutation p.W11S 0.47 deleterious(0) probably_damaging(0.999) TCGA-FG-7634-01 4 30725853 30725853 G C PCDH7 Missense_Mutation p.D937H 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-FG-7634-01 8 27401706 27401706 C A EPHX2 Missense_Mutation p.P512T 0.28 deleterious(0) benign(0.295) TCGA-FG-7634-01 9 107645364 107645364 C T ABCA1 Missense_Mutation p.R126H 0.08 tolerated(0.13) benign(0) TCGA-FG-7636-01 10 70451205 70451205 C T TET1 Silent p.H2015H 0.36 TCGA-FG-7636-01 11 47726176 47726176 T C AGBL2 Missense_Mutation p.I169V 0.21 tolerated(0.82) benign(0.002) TCGA-FG-7636-01 11 55653549 55653549 A G TRIM51 Intron 0.67 TCGA-FG-7636-01 11 9499964 9499964 C T ZNF143 Missense_Mutation p.A134V 0.40 deleterious(0.01) possibly_damaging(0.691) TCGA-FG-7636-01 12 18891209 18891209 C T CAPZA3 Missense_Mutation p.L3F 0.05 deleterious_low_confidence(0.02) benign(0.12) TCGA-FG-7636-01 12 39763607 39763607 A G KIF21A Missense_Mutation p.I125T 0.19 deleterious(0) possibly_damaging(0.532) TCGA-FG-7636-01 12 39763628 39763628 A C KIF21A Missense_Mutation p.V118G 0.19 deleterious(0) probably_damaging(0.999) TCGA-FG-7636-01 12 49431213 49431213 G A KMT2D Missense_Mutation p.S3309F 0.65 benign(0.049) TCGA-FG-7636-01 13 42783569 42783569 A - DGKH Frame_Shift_Del p.N941Tfs*6 0.33 TCGA-FG-7636-01 13 88329160 88329160 A G SLITRK5 Missense_Mutation p.N506S 0.37 tolerated(0.19) possibly_damaging(0.863) TCGA-FG-7636-01 14 50319514 50319514 G T NEMF 5'UTR 0.07 TCGA-FG-7636-01 14 54416985 54416985 C T BMP4 Missense_Mutation p.G331D 0.12 deleterious(0) probably_damaging(1) TCGA-FG-7636-01 16 1251754 1251754 A G CACNA1H Missense_Mutation p.E435G 0.33 deleterious(0) probably_damaging(0.993) TCGA-FG-7636-01 16 72110614 72110614 A G HPR Silent p.G227G 0.05 TCGA-FG-7636-01 16 72994030 72994031 - TCACAGCC ZFHX3 Frame_Shift_Ins p.D5Efs*52 0.12 TCGA-FG-7636-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.90 deleterious(0) probably_damaging(0.998) TCGA-FG-7636-01 19 17438523 17438523 C T ANO8 Missense_Mutation p.R798H 0.40 deleterious(0.01) unknown(0) TCGA-FG-7636-01 19 35842815 35842815 T C FFAR1 Missense_Mutation p.C121R 0.18 tolerated(0.86) benign(0.003) TCGA-FG-7636-01 19 48945567 48945567 C A GRIN2D Missense_Mutation p.H867Q 0.54 deleterious(0) possibly_damaging(0.795) TCGA-FG-7636-01 19 55693430 55693430 A T PTPRH Missense_Mutation p.F1051Y 0.29 benign(0.071) TCGA-FG-7636-01 19 56244181 56244181 G A NLRP9 Missense_Mutation p.T339M 0.53 tolerated(0.22) benign(0.029) TCGA-FG-7636-01 19 9057582 9057582 G C MUC16 Missense_Mutation p.T9955S 0.16 unknown(0) TCGA-FG-7636-01 19 9068570 9068570 T A MUC16 Silent p.T6292T 0.15 TCGA-FG-7636-01 1 155261708 155261708 C T PKLR Missense_Mutation p.R486Q 0.18 tolerated(0.05) benign(0.195) TCGA-FG-7636-01 1 160064985 160064985 C T IGSF8 Missense_Mutation p.R39H 0.17 deleterious(0) probably_damaging(0.998) TCGA-FG-7636-01 1 167870982 167870982 C T ADCY10 Silent p.V118V 0.05 TCGA-FG-7636-01 1 201046152 201046152 G A CACNA1S Missense_Mutation p.L575F 0.05 deleterious(0.02) probably_damaging(1) TCGA-FG-7636-01 1 248366731 248366731 A G OR2M3 Missense_Mutation p.D121G 0.08 deleterious(0) possibly_damaging(0.899) TCGA-FG-7636-01 1 907741 907741 C T PLEKHN1 Silent p.R313R 0.22 TCGA-FG-7636-01 20 46282304 46282304 T C NCOA3 3'UTR 0.45 TCGA-FG-7636-01 20 61881306 61881306 C A NKAIN4 Missense_Mutation p.R58L 0.04 deleterious(0) probably_damaging(0.999) TCGA-FG-7636-01 20 62178604 62178604 A G SRMS Silent p.S71S 0.50 TCGA-FG-7636-01 2 141739804 141739804 G A LRP1B Missense_Mutation p.R938C 0.16 probably_damaging(0.99) TCGA-FG-7636-01 2 148653873 148653873 C T ACVR2A Missense_Mutation p.A20V 0.15 tolerated(0.16) possibly_damaging(0.505) TCGA-FG-7636-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-7636-01 2 239050040 239050040 G A KLHL30 Silent p.L215L 0.27 TCGA-FG-7636-01 3 47719787 47719787 C T SMARCC1 Missense_Mutation p.R491Q 0.05 deleterious(0) probably_damaging(1) TCGA-FG-7636-01 4 153897446 153897446 G C FHDC1 Missense_Mutation p.K1001N 0.10 deleterious(0.01) probably_damaging(0.989) TCGA-FG-7636-01 4 164246852 164246852 T C NPY1R Missense_Mutation p.Y253C 0.30 tolerated(0.17) benign(0.003) TCGA-FG-7636-01 4 4304568 4304568 G A ZBTB49 Silent p.K335K 0.41 TCGA-FG-7636-01 4 44693681 44693681 A G GUF1 Splice_Site p.X494_splice 0.06 TCGA-FG-7636-01 4 75312475 75312475 T C AREG Missense_Mutation p.Y96H 0.03 deleterious(0.05) probably_damaging(0.998) TCGA-FG-7636-01 4 87770048 87770048 C T SLC10A6 Missense_Mutation p.C74Y 0.14 deleterious(0) probably_damaging(0.985) TCGA-FG-7636-01 5 175716891 175716891 C T SIMC1 Intron 0.13 TCGA-FG-7636-01 5 74130350 74130350 T G FAM169A Silent p.R131R 0.05 TCGA-FG-7636-01 6 126210341 126210341 T C NCOA7 Missense_Mutation p.S381P 0.19 tolerated_low_confidence(0.53) benign(0.001) TCGA-FG-7636-01 6 15523192 15523192 G A DTNBP1 3'UTR 0.09 TCGA-FG-7636-01 6 31747885 31747885 G A VARS Silent p.L991L 0.15 TCGA-FG-7636-01 6 32188018 32188018 G T NOTCH4 Nonsense_Mutation p.C401* 0.15 TCGA-FG-7636-01 6 51799071 51799071 G A PKHD1 Silent p.H1986H 0.03 TCGA-FG-7636-01 7 107823139 107823139 G A NRCAM Missense_Mutation p.L844F 0.37 tolerated(0.3) benign(0.111) TCGA-FG-7636-01 7 128432468 128432468 G A CCDC136 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0.03) benign(0.384) TCGA-FG-7636-01 9 71629038 71629039 - GCGGCG PRKACG 5'UTR 0.32 TCGA-FG-7636-01 X 76855040 76855046 TTTCTTC - ATRX Frame_Shift_Del p.K1932Gfs*21 0.73 TCGA-FG-7637-01 10 103577687 103577687 C A MGEA5 Silent p.P31P 0.53 TCGA-FG-7637-01 10 27381396 27381396 G C ANKRD26 Missense_Mutation p.Q193E 0.21 tolerated(0.59) benign(0.001) TCGA-FG-7637-01 10 98144479 98144479 C T TLL2 Missense_Mutation p.D687N 0.39 tolerated(0.35) benign(0.099) TCGA-FG-7637-01 11 1087506 1087506 G A MUC2 Missense_Mutation p.G1086E 0.34 probably_damaging(1) TCGA-FG-7637-01 11 55062918 55062918 C T TRIM51HP Intron 0.17 TCGA-FG-7637-01 11 55587473 55587473 G A OR5D18 Missense_Mutation p.R123H 0.24 tolerated(0.06) benign(0.109) TCGA-FG-7637-01 11 71942617 71942617 G A INPPL1 Missense_Mutation p.V525I 0.31 tolerated(0.29) benign(0.11) TCGA-FG-7637-01 12 50598436 50598436 G A LIMA1 Nonsense_Mutation p.R255* 0.44 TCGA-FG-7637-01 12 88390403 88390403 T C C12orf50 Missense_Mutation p.K104E 0.16 deleterious(0.01) possibly_damaging(0.547) TCGA-FG-7637-01 13 95273351 95273351 A G GPR180 Silent p.Q252Q 0.18 TCGA-FG-7637-01 14 81946063 81946063 A C SEL1L Missense_Mutation p.F690V 0.16 deleterious(0.02) probably_damaging(0.988) TCGA-FG-7637-01 16 2374516 2374516 G A ABCA3 Silent p.S112S 0.34 TCGA-FG-7637-01 17 33464163 33464163 G A NLE1 Missense_Mutation p.R229W 0.36 deleterious(0) probably_damaging(0.991) TCGA-FG-7637-01 1 100613719 100613719 T G TRMT13 Missense_Mutation p.Y363D 0.77 tolerated(0.09) possibly_damaging(0.752) TCGA-FG-7637-01 1 236738051 236738051 C T HEATR1 Silent p.P1079P 0.40 TCGA-FG-7637-01 1 245530297 245530297 C T KIF26B Silent p.A209A 0.10 TCGA-FG-7637-01 1 248685220 248685220 C T OR2G6 Silent p.T91T 0.40 TCGA-FG-7637-01 1 27100381 27100381 C T ARID1A Nonsense_Mutation p.Q1365* 0.36 TCGA-FG-7637-01 1 27106229 27106230 AG - ARID1A Frame_Shift_Del p.S1948Pfs*14 0.15 TCGA-FG-7637-01 20 62421703 62421703 G A ZBTB46 Silent p.D136D 0.08 TCGA-FG-7637-01 21 47574183 47574183 C T FTCD Missense_Mutation p.A40T 0.06 deleterious(0.05) benign(0.232) TCGA-FG-7637-01 22 35726358 35726358 C G TOM1 Missense_Mutation p.R262G 0.52 deleterious(0) possibly_damaging(0.704) TCGA-FG-7637-01 22 42390829 42390829 A G SEPT3 Intron 0.43 TCGA-FG-7637-01 2 112813196 112813196 G T TMEM87B Missense_Mutation p.G10W 0.25 tolerated_low_confidence(0.11) benign(0.001) TCGA-FG-7637-01 2 178482180 178482180 T C TTC30A Missense_Mutation p.D417G 0.03 deleterious(0.02) benign(0.126) TCGA-FG-7637-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-7637-01 3 114058002 114058003 - G ZBTB20 Frame_Shift_Ins p.A693Cfs*33 0.31 TCGA-FG-7637-01 3 196675277 196675277 C A PIGZ Missense_Mutation p.G164V 0.23 deleterious(0.02) possibly_damaging(0.862) TCGA-FG-7637-01 3 47447437 47447437 C A PTPN23 Nonsense_Mutation p.C149* 0.08 TCGA-FG-7637-01 3 49712666 49712666 C T APEH Nonsense_Mutation p.Q66* 0.49 TCGA-FG-7637-01 4 106890076 106890076 C A NPNT Missense_Mutation p.R573S 0.45 deleterious(0) possibly_damaging(0.795) TCGA-FG-7637-01 4 79204003 79204003 C A FRAS1 Nonsense_Mutation p.C379* 0.05 TCGA-FG-7637-01 5 133534841 133534841 A T PPP2CA Missense_Mutation p.Y265N 0.11 deleterious(0) possibly_damaging(0.666) TCGA-FG-7637-01 5 137521298 137521298 G A KIF20A Missense_Mutation p.R675Q 0.27 tolerated(0.09) probably_damaging(0.988) TCGA-FG-7637-01 5 80716301 80716301 C G SSBP2 3'UTR 0.30 TCGA-FG-7637-01 6 117246787 117246787 T A RFX6 Missense_Mutation p.F617Y 0.09 tolerated_low_confidence(0.53) benign(0.027) TCGA-FG-7637-01 6 31612853 31612853 A C BAG6 Missense_Mutation p.N419K 0.43 tolerated(0.61) benign(0.015) TCGA-FG-7637-01 6 56483940 56483940 T G DST Intron 0.13 TCGA-FG-7637-01 7 104783594 104783594 C T SRPK2 Missense_Mutation p.E333K 0.14 tolerated(0.15) benign(0.085) TCGA-FG-7637-01 7 44579720 44579720 G A NPC1L1 Silent p.S92S 0.05 TCGA-FG-7637-01 8 37730001 37730001 G A RAB11FIP1 Silent p.P773P 0.29 TCGA-FG-7638-01 11 75148073 75148073 C T GDPD5 Missense_Mutation p.R526Q 0.06 tolerated(0.32) benign(0.003) TCGA-FG-7638-01 12 64057543 64057543 C T DPY19L2 Missense_Mutation p.E149K 0.32 deleterious(0.02) probably_damaging(0.939) TCGA-FG-7638-01 12 72091160 72091160 C T TMEM19 Silent p.V161V 0.08 TCGA-FG-7638-01 16 76482070 76482070 C T CNTNAP4 Silent p.L209L 0.06 TCGA-FG-7638-01 17 11554444 11554444 C A DNAH9 Missense_Mutation p.P719H 0.40 probably_damaging(1) TCGA-FG-7638-01 17 80332481 80332481 C T UTS2R Missense_Mutation p.A94V 0.37 deleterious(0) probably_damaging(1) TCGA-FG-7638-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.64 probably_damaging(1) TCGA-FG-7638-01 19 42793431 42793431 G A CIC Silent p.A411A 0.73 TCGA-FG-7638-01 19 55285075 55285075 G A KIR2DL1 Missense_Mutation p.V121M 0.05 tolerated(0.36) probably_damaging(0.976) TCGA-FG-7638-01 1 152484246 152484246 G A LCE5A Missense_Mutation p.R79Q 0.39 tolerated_low_confidence(0.15) unknown(0) TCGA-FG-7638-01 2 197657737 197657737 C T GTF3C3 Silent p.A118A 0.34 TCGA-FG-7638-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-7638-01 2 234652338 234652338 G A UGT1A10 Intron 0.44 TCGA-FG-7638-01 3 102181219 102181219 G A ZPLD1 Missense_Mutation p.G242D 0.42 tolerated(0.65) benign(0.015) TCGA-FG-7638-01 5 176026758 176026758 G A GPRIN1 Silent p.A26A 0.36 TCGA-FG-7638-01 7 98576479 98576479 C T TRRAP Silent p.C2855C 0.05 TCGA-FG-7638-01 8 24772187 24772187 G C NEFM Missense_Mutation p.C294S 0.10 tolerated(0.84) unknown(0) TCGA-FG-7638-01 9 130672316 130672316 G C ST6GALNAC4 Silent p.L211L 0.28 TCGA-FG-7638-01 9 139412302 139412302 C A NOTCH1 Missense_Mutation p.R448L 0.07 tolerated(0.09) probably_damaging(0.997) TCGA-FG-7638-01 9 74970965 74970965 G A ZFAND5 Silent p.D182D 0.44 TCGA-FG-7638-01 X 100912542 100912542 C T ARMCX2 Silent p.A11A 0.33 TCGA-FG-7638-01 X 47104794 47104794 G A USP11 Missense_Mutation p.G771E 0.27 tolerated(1) benign(0.07) TCGA-FG-7638-01 X 76937357 76937357 T C ATRX Missense_Mutation p.R1131G 0.47 benign(0.001) TCGA-FG-7638-01 X 8503844 8503844 G T KAL1 Missense_Mutation p.L544I 0.33 tolerated(0.32) benign(0.086) TCGA-FG-7641-01 10 16526578 16526578 T C PTER Silent p.Y65Y 0.04 TCGA-FG-7641-01 12 100502164 100502164 C T UHRF1BP1L Silent p.R69R 0.28 TCGA-FG-7641-01 12 112888139 112888139 C G PTPN11 Missense_Mutation p.T52S 0.38 deleterious(0.02) probably_damaging(0.969) TCGA-FG-7641-01 13 79945160 79945160 C T RBM26 Missense_Mutation p.R185Q 0.06 tolerated(0.29) unknown(0) TCGA-FG-7641-01 16 58296338 58296338 A G CCDC113 Missense_Mutation p.K226R 0.42 tolerated(0.05) possibly_damaging(0.845) TCGA-FG-7641-01 16 9934822 9934822 T A GRIN2A Missense_Mutation p.N490Y 0.05 deleterious(0) probably_damaging(0.983) TCGA-FG-7641-01 17 11671916 11671916 C T DNAH9 Silent p.F2439F 0.03 TCGA-FG-7641-01 17 5312118 5312118 T A NUP88 Silent p.A264A 0.24 TCGA-FG-7641-01 17 56690826 56690826 C T TEX14 Missense_Mutation p.E327K 0.05 deleterious(0.02) probably_damaging(0.954) TCGA-FG-7641-01 17 64880891 64880891 A G CACNG5 Intron 0.34 TCGA-FG-7641-01 17 76109646 76109646 C T TMC6 Silent p.E779E 0.15 TCGA-FG-7641-01 19 10823935 10823935 A T QTRT1 Missense_Mutation p.T401S 0.37 tolerated(0.24) benign(0.001) TCGA-FG-7641-01 19 42791728 42791728 A G CIC Missense_Mutation p.N205S 0.13 probably_damaging(0.999) TCGA-FG-7641-01 19 42791796 42791796 C T CIC Missense_Mutation p.R228W 0.14 probably_damaging(1) TCGA-FG-7641-01 19 42798848 42798848 G C CIC Missense_Mutation p.V1474L 0.08 possibly_damaging(0.785) TCGA-FG-7641-01 19 59028924 59028924 A C ZBTB45 Missense_Mutation p.I39M 0.15 deleterious(0) probably_damaging(0.996) TCGA-FG-7641-01 22 25625545 25625545 C T CRYBB2 Missense_Mutation p.T150M 0.18 tolerated(0.06) probably_damaging(0.993) TCGA-FG-7641-01 2 100079071 100079071 G A REV1 Missense_Mutation p.A23V 0.04 deleterious(0.03) benign(0.082) TCGA-FG-7641-01 2 152226605 152226605 G A TNFAIP6 Missense_Mutation p.E156K 0.07 tolerated(0.1) benign(0.014) TCGA-FG-7641-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-7641-01 2 222321395 222321395 C T EPHA4 Missense_Mutation p.R514Q 0.11 tolerated(0.11) probably_damaging(0.968) TCGA-FG-7641-01 3 125831636 125831636 C T ALDH1L1 Missense_Mutation p.V734M 0.07 deleterious(0) possibly_damaging(0.869) TCGA-FG-7641-01 3 50332974 50332974 G A HYAL3 Silent p.G20G 0.08 TCGA-FG-7641-01 4 79421075 79421075 G A FRAS1 Missense_Mutation p.G3106S 0.09 probably_damaging(0.937) TCGA-FG-7641-01 4 8293208 8293208 G A HTRA3 Missense_Mutation p.V274I 0.36 tolerated(0.08) benign(0.362) TCGA-FG-7641-01 5 134782790 134782790 G A C5orf20 Silent p.Y3Y 0.09 TCGA-FG-7641-01 5 13766101 13766101 A G DNAH5 Missense_Mutation p.F3362S 0.41 benign(0.02) TCGA-FG-7641-01 5 140516689 140516689 C T PCDHB5 Missense_Mutation p.P558L 0.21 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-FG-7641-01 5 82849281 82849281 C T VCAN Missense_Mutation p.R3198C 0.29 deleterious(0) probably_damaging(0.998) TCGA-FG-7641-01 6 49583402 49583402 G T RHAG Missense_Mutation p.S192Y 0.37 deleterious(0) probably_damaging(0.943) TCGA-FG-7641-01 6 52767170 52767170 G A GSTA3 Silent p.Y82Y 0.03 TCGA-FG-7641-01 7 139734111 139734111 C T PARP12 Missense_Mutation p.V449I 0.31 tolerated(0.18) benign(0.002) TCGA-FG-7641-01 8 6479212 6479212 G A MCPH1 Missense_Mutation p.D818N 0.08 deleterious(0.01) probably_damaging(0.983) TCGA-FG-7641-01 8 73480147 73480147 C T KCNB2 Missense_Mutation p.R60C 0.11 deleterious(0) probably_damaging(1) TCGA-FG-7643-01 10 124157455 124157455 C T PLEKHA1 Missense_Mutation p.R55C 0.19 tolerated(0.25) benign(0.003) TCGA-FG-7643-01 10 131761728 131761728 G T EBF3 Missense_Mutation p.S65Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-FG-7643-01 10 63957831 63957831 T C RTKN2 Missense_Mutation p.M556V 0.17 tolerated(0.99) benign(0) TCGA-FG-7643-01 11 281299 281299 C T NLRP6 Missense_Mutation p.A522V 0.19 tolerated(0.09) benign(0.215) TCGA-FG-7643-01 11 4567000 4567000 G A OR52M1 Missense_Mutation p.D194N 0.15 deleterious(0.04) benign(0.26) TCGA-FG-7643-01 11 4674486 4674486 G A OR51E1 Missense_Mutation p.V244I 0.13 tolerated(0.31) benign(0.007) TCGA-FG-7643-01 11 55587486 55587486 T A OR5D18 Silent p.I127I 0.12 TCGA-FG-7643-01 11 62381890 62381890 C T ROM1 Nonsense_Mutation p.Q251* 0.17 TCGA-FG-7643-01 11 66063102 66063102 G A TMEM151A Missense_Mutation p.G462E 0.14 tolerated_low_confidence(0.07) possibly_damaging(0.484) TCGA-FG-7643-01 12 10959421 10959421 G A TAS2R8 Silent p.I53I 0.12 TCGA-FG-7643-01 12 13715687 13715687 G A GRIN2B 3'UTR 0.10 TCGA-FG-7643-01 12 13906702 13906702 G A GRIN2B Missense_Mutation p.R187C 0.05 deleterious(0) probably_damaging(0.981) TCGA-FG-7643-01 12 97082742 97082742 G A C12orf55 Silent p.L2021L 0.13 TCGA-FG-7643-01 13 77570092 77570092 C T CLN5 Missense_Mutation p.T181I 0.06 deleterious(0) probably_damaging(0.999) TCGA-FG-7643-01 14 75017918 75017918 G A LTBP2 Missense_Mutation p.P512L 0.10 tolerated(0.37) benign(0.002) TCGA-FG-7643-01 15 39544388 39544388 G A C15orf54 Missense_Mutation p.A18T 0.05 tolerated_low_confidence(1) benign(0.013) TCGA-FG-7643-01 15 63362113 63362113 G A TPM1 Intron 0.05 TCGA-FG-7643-01 15 76073206 76073206 G A RN7SL319P 5'Flank 0.04 TCGA-FG-7643-01 15 81592440 81592440 C G IL16 Missense_Mutation p.P925A 0.14 tolerated(0.17) benign(0.005) TCGA-FG-7643-01 15 99023868 99023868 G A FAM169B Missense_Mutation p.R49C 0.06 deleterious(0.01) possibly_damaging(0.646) TCGA-FG-7643-01 17 21731352 21731352 C A UBBP4 Intron 0.17 TCGA-FG-7643-01 17 38933849 38933849 C T KRT27 Missense_Mutation p.E370K 0.12 deleterious(0.01) benign(0.125) TCGA-FG-7643-01 17 61765935 61765935 C T MAP3K3 Silent p.D284D 0.13 TCGA-FG-7643-01 17 72613303 72613303 T C CD300E Silent p.S114S 0.04 TCGA-FG-7643-01 19 15271630 15271630 G A NOTCH3 Missense_Mutation p.T2270M 0.05 tolerated(0.12) benign(0.074) TCGA-FG-7643-01 19 36045932 36045932 C T ATP4A Silent p.L791L 0.05 TCGA-FG-7643-01 1 151265427 151265428 - T PI4KB Frame_Shift_Ins p.L797Afs*22 0.17 TCGA-FG-7643-01 1 159842876 159842876 G A CCDC19 Missense_Mutation p.R479W 0.20 deleterious(0) probably_damaging(0.993) TCGA-FG-7643-01 1 185947027 185947027 G A HMCN1 Missense_Mutation p.R827Q 0.11 benign(0.007) TCGA-FG-7643-01 1 201020210 201020210 C T CACNA1S Missense_Mutation p.D1339N 0.05 deleterious(0.01) benign(0.139) TCGA-FG-7643-01 1 21268144 21268144 G A EIF4G3 Silent p.A451A 0.05 TCGA-FG-7643-01 1 43826262 43826262 C A CDC20 Silent p.S282S 0.05 TCGA-FG-7643-01 20 57766794 57766794 C T ZNF831 Silent p.G240G 0.20 TCGA-FG-7643-01 21 27852702 27852702 C A CYYR1 Missense_Mutation p.G75W 0.04 deleterious(0) probably_damaging(0.999) TCGA-FG-7643-01 2 179414390 179414390 C T TTN Missense_Mutation p.G30687S 0.05 TCGA-FG-7643-01 2 187698677 187698677 C T ZSWIM2 Missense_Mutation p.R275H 0.18 deleterious(0) probably_damaging(0.999) TCGA-FG-7643-01 2 219029298 219029298 C T CXCR1 Missense_Mutation p.V213M 0.08 deleterious(0.01) benign(0.149) TCGA-FG-7643-01 3 51993277 51993277 G A PCBP4 Missense_Mutation p.A223V 0.05 tolerated(0.17) benign(0.022) TCGA-FG-7643-01 3 57542756 57542757 - T PDE12 Frame_Shift_Ins p.P218Sfs*10 0.15 TCGA-FG-7643-01 3 62317051 62317051 C T C3orf14 Missense_Mutation p.R77W 0.13 tolerated(0.18) possibly_damaging(0.491) TCGA-FG-7643-01 3 97329663 97329663 T C EPHA6 Missense_Mutation p.Y847H 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-FG-7643-01 4 10077032 10077032 G A WDR1 Silent p.A597A 0.12 TCGA-FG-7643-01 4 165962517 165962517 G A TRIM60 Missense_Mutation p.M431I 0.06 tolerated(0.1) benign(0.232) TCGA-FG-7643-01 4 46060562 46060562 A G GABRG1 Silent p.L235L 0.11 TCGA-FG-7643-01 4 57873149 57873149 C T POLR2B Missense_Mutation p.A462V 0.13 tolerated(0.31) benign(0.271) TCGA-FG-7643-01 4 77255306 77255306 A T CCDC158 Silent p.A893A 0.07 TCGA-FG-7643-01 4 88091688 88091688 C T KLHL8 Missense_Mutation p.V430M 0.07 deleterious(0) probably_damaging(1) TCGA-FG-7643-01 5 101709135 101709135 C T SLCO6A1 Missense_Mutation p.R694H 0.09 tolerated(0.42) benign(0.155) TCGA-FG-7643-01 5 140558380 140558380 C G PCDHB8 Missense_Mutation p.D255E 0.16 deleterious_low_confidence(0) benign(0.184) TCGA-FG-7643-01 5 140865844 140865844 G A PCDHGC4 Silent p.V368V 0.11 TCGA-FG-7643-01 5 140908744 140908744 C T DIAPH1 Missense_Mutation p.V925M 0.10 probably_damaging(0.954) TCGA-FG-7643-01 5 147491350 147491350 G A SPINK5 Missense_Mutation p.R571H 0.20 deleterious(0.02) probably_damaging(1) TCGA-FG-7643-01 5 156589802 156589802 G A FAM71B Nonsense_Mutation p.R492* 0.12 TCGA-FG-7643-01 5 37169185 37169185 T C C5orf42 Missense_Mutation p.H2314R 0.10 deleterious(0.02) benign(0.048) TCGA-FG-7643-01 5 40934551 40934551 G A C7 Missense_Mutation p.R88H 0.13 deleterious(0) probably_damaging(0.998) TCGA-FG-7643-01 5 7520913 7520913 C T ADCY2 Silent p.D157D 0.07 TCGA-FG-7643-01 5 90106376 90106376 G T GPR98 Missense_Mutation p.R5100M 0.08 benign(0.133) TCGA-FG-7643-01 6 117686238 117686238 G A ROS1 Nonsense_Mutation p.R1035* 0.12 TCGA-FG-7643-01 6 31083952 31083952 G A CDSN Silent p.S480S 0.13 TCGA-FG-7643-01 6 31473999 31473999 C T MICB Silent p.Y135Y 0.08 TCGA-FG-7643-01 7 107732214 107732214 G A LAMB4 Missense_Mutation p.P520S 0.07 tolerated(0.26) benign(0.124) TCGA-FG-7643-01 7 30651808 30651808 T G GARS Missense_Mutation p.I326M 0.09 deleterious(0) probably_damaging(0.998) TCGA-FG-7643-01 7 77885614 77885614 G T MAGI2 Missense_Mutation p.P565T 0.06 deleterious(0.03) benign(0.397) TCGA-FG-7643-01 8 28981588 28981588 C T KIF13B Missense_Mutation p.R1102H 0.11 deleterious(0) benign(0.329) TCGA-FG-7643-01 8 30938764 30938764 G A WRN Silent p.Q407Q 0.06 TCGA-FG-7643-01 8 55533746 55533746 G T RP1 Missense_Mutation p.V74L 0.06 deleterious(0) probably_damaging(0.98) TCGA-FG-7643-01 8 59409693 59409693 G A CYP7A1 Silent p.N126N 0.06 TCGA-FG-7643-01 9 13206053 13206053 C A MPDZ Nonsense_Mutation p.E446* 0.08 TCGA-FG-7643-01 9 39073734 39073734 G A CNTNAP3 3'UTR 0.15 TCGA-FG-8181-01 10 73565716 73565716 G C CDH23 Missense_Mutation p.A436P 0.12 tolerated(0.07) probably_damaging(0.979) TCGA-FG-8181-01 3 47042591 47042591 G A NBEAL2 Missense_Mutation p.R1469H 0.08 deleterious(0) probably_damaging(0.999) TCGA-FG-8182-01 11 108381318 108381318 C T EXPH5 Missense_Mutation p.C1639Y 0.55 tolerated(0.99) possibly_damaging(0.8) TCGA-FG-8182-01 11 63988497 63988497 C T FERMT3 Missense_Mutation p.R523W 0.06 deleterious(0) probably_damaging(1) TCGA-FG-8182-01 14 106209367 106209367 G A IGHG1 Silent p.S14S 0.06 TCGA-FG-8182-01 15 57565437 57565438 - TTGAC TCF12 Nonsense_Mutation p.S653* 0.26 TCGA-FG-8182-01 17 36958970 36958970 C T CWC25 Silent p.R382R 0.07 TCGA-FG-8182-01 17 7574012 7574012 C A TP53 Nonsense_Mutation p.E339* 0.18 TCGA-FG-8182-01 17 7579311 7579311 C T TP53 Splice_Site p.X125_splice 0.46 TCGA-FG-8182-01 17 80195025 80195025 G A SLC16A3 Missense_Mutation p.A127T 0.18 deleterious(0) probably_damaging(0.973) TCGA-FG-8182-01 19 43262370 43262370 C A PSG8 Missense_Mutation p.V165L 0.07 tolerated(0.09) possibly_damaging(0.717) TCGA-FG-8182-01 19 45916941 45916941 A T ERCC1 Silent p.P279P 0.10 TCGA-FG-8182-01 19 55112237 55112237 C T LILRA1 Silent p.L475L 0.07 TCGA-FG-8182-01 19 57724354 57724354 A G ZNF264 3'UTR 0.12 TCGA-FG-8182-01 19 6984841 6984841 G A EMR4P RNA 0.13 TCGA-FG-8182-01 19 8987333 8987333 G A MUC16 Silent p.T13918T 0.11 TCGA-FG-8182-01 1 17586174 17586174 C A PADI3 Missense_Mutation p.T65N 0.06 tolerated(0.47) possibly_damaging(0.493) TCGA-FG-8182-01 1 245027266 245027266 G A HNRNPU Missense_Mutation p.A115V 0.10 tolerated_low_confidence(0.08) possibly_damaging(0.499) TCGA-FG-8182-01 1 65858364 65858364 T G DNAJC6 Silent p.A573A 0.11 TCGA-FG-8182-01 20 20123549 20123549 A T C20orf26 Missense_Mutation p.E303V 0.23 tolerated(0.05) benign(0.107) TCGA-FG-8182-01 20 52192452 52192452 T C ZNF217 Missense_Mutation p.I951V 0.07 tolerated(0.44) benign(0.018) TCGA-FG-8182-01 22 40762494 40762494 G A ADSL Missense_Mutation p.V475M 0.07 tolerated(0.25) benign(0.001) TCGA-FG-8182-01 2 102988523 102988523 T C IL18R1 Missense_Mutation p.I138T 0.13 deleterious(0) probably_damaging(0.909) TCGA-FG-8182-01 2 171509614 171509614 T C MYO3B Missense_Mutation p.S1337P 0.10 tolerated_low_confidence(0.3) benign(0) TCGA-FG-8182-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-8182-01 2 217364056 217364056 C T RPL37A Missense_Mutation p.R23W 0.08 tolerated(0.13) benign(0.021) TCGA-FG-8182-01 2 217525369 217525369 C T IGFBP2 Missense_Mutation p.R178W 0.14 deleterious(0) probably_damaging(0.947) TCGA-FG-8182-01 2 238277572 238277572 A G COL6A3 Missense_Mutation p.S1512P 0.07 probably_damaging(0.959) TCGA-FG-8182-01 5 137501597 137501597 T C BRD8 Missense_Mutation p.M400V 0.11 tolerated(0.14) possibly_damaging(0.874) TCGA-FG-8182-01 6 143095693 143095693 T C HIVEP2 Silent p.A61A 0.12 TCGA-FG-8182-01 6 167728856 167728856 C T UNC93A Silent p.C430C 0.08 TCGA-FG-8182-01 6 74491008 74491008 T C CD109 Silent p.D643D 0.11 TCGA-FG-8182-01 6 86253424 86253424 G C SNX14 Missense_Mutation p.S388C 0.12 tolerated(0.09) possibly_damaging(0.684) TCGA-FG-8182-01 6 90397120 90397120 C T MDN1 Missense_Mutation p.R3798Q 0.14 possibly_damaging(0.885) TCGA-FG-8182-01 7 142575445 142575445 G A TRPV6 Missense_Mutation p.P103L 0.06 deleterious(0) probably_damaging(0.998) TCGA-FG-8182-01 7 5540405 5540405 T C FBXL18 Missense_Mutation p.M499V 0.18 tolerated(0.07) benign(0.372) TCGA-FG-8182-01 9 17236520 17236520 G A CNTLN Silent p.L261L 0.18 TCGA-FG-8182-01 X 49105641 49105641 C T CCDC22 Missense_Mutation p.T518M 0.16 deleterious(0) probably_damaging(1) TCGA-FG-8182-01 X 65253475 65253475 G A VSIG4 Missense_Mutation p.R85C 0.21 tolerated(0.06) possibly_damaging(0.836) TCGA-FG-8182-01 X 76845302 76845302 A G ATRX Splice_Site p.X2073_splice 0.25 TCGA-FG-8182-01 X 76890105 76890106 - CATA ATRX Frame_Shift_Ins p.G1597Yfs*5 0.30 TCGA-FG-8182-01 X 76938654 76938655 - T ATRX Frame_Shift_Ins p.D699Gfs*2 0.11 TCGA-FG-8185-01 10 1779285 1779285 G C ADARB2 Missense_Mutation p.C20W 0.15 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-FG-8185-01 11 102465488 102465488 C G MMP20 Silent p.R318R 0.42 TCGA-FG-8185-01 11 22360149 22360149 C G SLC17A6 Missense_Mutation p.L24V 0.24 deleterious(0.05) benign(0.215) TCGA-FG-8185-01 12 69230521 69230521 T C MDM2 Missense_Mutation p.S304P 0.37 deleterious(0) probably_damaging(0.981) TCGA-FG-8185-01 14 88454494 88454494 T A GALC Missense_Mutation p.T108S 0.30 tolerated(1) benign(0.002) TCGA-FG-8185-01 15 101109585 101109585 C G LINS Missense_Mutation p.R711T 0.06 tolerated(0.06) benign(0.109) TCGA-FG-8185-01 15 58855814 58855814 C T LIPC Missense_Mutation p.A427V 0.07 tolerated(0.11) benign(0.128) TCGA-FG-8185-01 16 11349039 11349039 G T SOCS1 Silent p.G99G 0.23 TCGA-FG-8185-01 16 57206707 57206707 G A FAM192A Silent p.Y69Y 0.49 TCGA-FG-8185-01 16 89351668 89351668 G C ANKRD11 Missense_Mutation p.L428V 0.07 possibly_damaging(0.899) TCGA-FG-8185-01 17 28409944 28409944 C T EFCAB5 Silent p.Y1154Y 0.14 TCGA-FG-8185-01 17 73502707 73502707 G C CASKIN2 Missense_Mutation p.P192A 0.03 deleterious(0) probably_damaging(0.998) TCGA-FG-8185-01 17 7578203 7578203 C A TP53 Missense_Mutation p.V216L 0.47 deleterious(0) probably_damaging(0.998) TCGA-FG-8185-01 17 7578265 7578265 A T TP53 Missense_Mutation p.I195N 0.39 deleterious(0) probably_damaging(1) TCGA-FG-8185-01 18 7023260 7023260 C A LAMA1 Silent p.G868G 0.45 TCGA-FG-8185-01 18 72999933 72999933 G A TSHZ1 Silent p.T812T 0.06 TCGA-FG-8185-01 19 10394873 10394873 G A ICAM1 Missense_Mutation p.D268N 0.37 tolerated(0.06) benign(0.413) TCGA-FG-8185-01 19 15472624 15472624 C G AKAP8 Missense_Mutation p.V438L 0.08 tolerated(0.07) benign(0.191) TCGA-FG-8185-01 19 1979554 1979554 A G CSNK1G2 Missense_Mutation p.Y305C 0.45 deleterious(0.04) probably_damaging(0.997) TCGA-FG-8185-01 19 41197999 41197999 C G ADCK4 Missense_Mutation p.D526H 0.41 deleterious_low_confidence(0.02) benign(0.064) TCGA-FG-8185-01 19 57802257 57802257 G C ZNF460 Missense_Mutation p.E116D 0.39 tolerated(0.06) possibly_damaging(0.765) TCGA-FG-8185-01 1 110050585 110050585 G C AMIGO1 Missense_Mutation p.T317R 0.04 deleterious(0.04) benign(0.04) TCGA-FG-8185-01 1 115216305 115216305 G A AMPD1 Silent p.C713C 0.48 TCGA-FG-8185-01 1 152084077 152084077 C G TCHH Missense_Mutation p.R539T 0.06 unknown(0) TCGA-FG-8185-01 1 183086809 183086809 G A LAMC1 Missense_Mutation p.A610T 0.05 deleterious(0.01) probably_damaging(1) TCGA-FG-8185-01 1 18958132 18958132 T A PAX7 Missense_Mutation p.M12K 0.08 deleterious_low_confidence(0) benign(0.263) TCGA-FG-8185-01 1 222803484 222803484 C G MIA3 Silent p.V974V 0.45 TCGA-FG-8185-01 1 906512 906512 G A PLEKHN1 Missense_Mutation p.R211Q 0.27 tolerated(0.11) benign(0.031) TCGA-FG-8185-01 20 33567544 33567544 G A MYH7B Silent p.T135T 0.39 TCGA-FG-8185-01 20 33862232 33862232 C T MMP24 Silent p.D586D 0.39 TCGA-FG-8185-01 20 48098819 48098819 C G KCNB1 Missense_Mutation p.D67H 0.11 deleterious(0) probably_damaging(0.97) TCGA-FG-8185-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-FG-8185-01 2 21228306 21228306 C G APOB Missense_Mutation p.E3812Q 0.46 benign(0.21) TCGA-FG-8185-01 2 71148309 71148309 C T VAX2 Missense_Mutation p.T110I 0.04 deleterious(0) probably_damaging(0.998) TCGA-FG-8185-01 3 10191622 10191622 C T VHL Silent p.R205R 0.47 TCGA-FG-8185-01 3 147108852 147108852 G C ZIC4 Silent p.R340R 0.05 TCGA-FG-8185-01 4 69696406 69696406 G C UGT2B10 Missense_Mutation p.V466L 0.06 deleterious(0) possibly_damaging(0.901) TCGA-FG-8185-01 5 161569181 161569181 G T GABRG2 Missense_Mutation p.V301F 0.29 deleterious(0) possibly_damaging(0.771) TCGA-FG-8185-01 6 131929091 131929091 C T MED23 Missense_Mutation p.D400N 0.44 tolerated(0.08) benign(0.058) TCGA-FG-8185-01 7 5104674 5104674 C G RBAK Missense_Mutation p.H529Q 0.27 deleterious(0.02) benign(0.003) TCGA-FG-8185-01 7 92838050 92838050 C G HEPACAM2 Missense_Mutation p.R285S 0.57 deleterious(0.01) possibly_damaging(0.472) TCGA-FG-8185-01 8 107773141 107773141 G A ABRA 3'UTR 0.80 TCGA-FG-8185-01 8 95530133 95530133 C T KIAA1429 Missense_Mutation p.A851T 0.42 tolerated(0.11) probably_damaging(0.999) TCGA-FG-8185-01 9 113139603 113139603 G C SVEP1 Silent p.R3484R 0.31 TCGA-FG-8185-01 9 117568099 117568099 G A TNFSF15 Missense_Mutation p.A65V 0.19 tolerated(0.23) benign(0.004) TCGA-FG-8185-01 9 140946550 140946550 C G CACNA1B Silent p.S1239S 0.36 TCGA-FG-8185-01 X 110968244 110968244 G A ALG13 Missense_Mutation p.G562R 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-FG-8185-01 X 131214292 131214292 C G FRMD7 Missense_Mutation p.G303A 0.19 deleterious(0) probably_damaging(1) TCGA-FG-8185-01 X 153136257 153136257 G T L1CAM Silent p.R228R 0.11 TCGA-FG-8185-01 X 76939914 76939915 AG - ATRX Frame_Shift_Del p.T278Sfs*3 0.49 TCGA-FG-8186-01 10 100012144 100012144 G A LOXL4 Silent p.A639A 0.09 TCGA-FG-8186-01 11 47281984 47281984 A G NR1H3 Missense_Mutation p.K86R 0.03 tolerated(0.05) benign(0.325) TCGA-FG-8186-01 11 47755624 47755624 T C FNBP4 Missense_Mutation p.N547D 0.34 tolerated(0.07) possibly_damaging(0.624) TCGA-FG-8186-01 11 82877743 82877743 G A PCF11 Missense_Mutation p.E602K 0.37 deleterious(0) probably_damaging(0.997) TCGA-FG-8186-01 12 110788156 110788156 G A ATP2A2 3'Flank 0.40 TCGA-FG-8186-01 12 45410365 45410365 G A DBX2 Missense_Mutation p.R242W 0.08 deleterious(0) probably_damaging(1) TCGA-FG-8186-01 13 25428134 25428134 G A RNF17 Silent p.Q1154Q 0.46 TCGA-FG-8186-01 13 52439604 52439604 G A CCDC70 Silent p.A30A 0.10 TCGA-FG-8186-01 14 54884631 54884631 C T CDKN3 Nonsense_Mutation p.R172* 0.39 TCGA-FG-8186-01 14 95599826 95599826 T C DICER1 5'UTR 0.17 TCGA-FG-8186-01 14 95670323 95670323 C T CLMN Missense_Mutation p.E455K 0.27 deleterious_low_confidence(0.03) benign(0.038) TCGA-FG-8186-01 15 50534698 50534698 C T HDC Missense_Mutation p.R583H 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FG-8186-01 17 39635168 39635168 C T KRT35 Missense_Mutation p.R264Q 0.08 tolerated(0.23) probably_damaging(0.955) TCGA-FG-8186-01 17 40384082 40384082 A T STAT5B Missense_Mutation p.Y22N 0.04 deleterious(0) probably_damaging(0.997) TCGA-FG-8186-01 17 4463042 4463042 C T GGT6 Missense_Mutation p.G52R 0.13 tolerated_low_confidence(0.07) possibly_damaging(0.851) TCGA-FG-8186-01 17 62498337 62498337 G A DDX5 Missense_Mutation p.P367S 0.07 deleterious(0.04) probably_damaging(0.99) TCGA-FG-8186-01 18 31538334 31538334 C T NOL4 Missense_Mutation p.V369I 0.29 tolerated(0.12) benign(0.003) TCGA-FG-8186-01 19 14044695 14044695 A G PODNL1 Missense_Mutation p.F262L 0.16 deleterious(0.03) possibly_damaging(0.883) TCGA-FG-8186-01 19 53793157 53793157 C T BIRC8 Silent p.Q157Q 0.05 TCGA-FG-8186-01 2 131521709 131521709 C T AMER3 Silent p.N688N 0.55 TCGA-FG-8186-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-8186-01 2 87211883 87211883 C G RGPD1 Missense_Mutation p.T855S 0.10 tolerated(0.08) benign(0.329) TCGA-FG-8186-01 3 190120187 190120187 G A CLDN16 Missense_Mutation p.R129H 0.12 tolerated(0.21) probably_damaging(0.973) TCGA-FG-8186-01 3 4358185 4358185 A G SETMAR Missense_Mutation p.N437S 0.30 tolerated_low_confidence(0.37) unknown(0) TCGA-FG-8186-01 4 107956552 107956552 C G DKK2 Missense_Mutation p.S66T 0.05 tolerated(0.62) benign(0.049) TCGA-FG-8186-01 4 156631972 156631972 A G GUCY1A3 Missense_Mutation p.I219V 0.30 tolerated(0.19) benign(0.045) TCGA-FG-8186-01 5 180338435 180338435 C T BTNL8 Missense_Mutation p.A165V 0.05 tolerated(1) benign(0.001) TCGA-FG-8186-01 6 64394227 64394227 C T PHF3 Nonsense_Mutation p.R202* 0.31 TCGA-FG-8186-01 7 128804343 128804343 A G TSPAN33 Missense_Mutation p.N131S 0.42 tolerated(0.52) benign(0.006) TCGA-FG-8186-01 7 139529240 139529240 G A TBXAS1 Silent p.T18T 0.05 TCGA-FG-8186-01 7 34977700 34977700 T A DPY19L1 Missense_Mutation p.S593C 0.51 deleterious(0) probably_damaging(0.995) TCGA-FG-8186-01 9 139412245 139412245 C A NOTCH1 Missense_Mutation p.C467F 0.04 deleterious(0) probably_damaging(1) TCGA-FG-8186-01 9 75520934 75520934 C T ALDH1A1 Missense_Mutation p.G458D 0.22 tolerated(0.78) benign(0.201) TCGA-FG-8186-01 X 122598965 122598965 T A GRIA3 Splice_Site p.X775_splice 0.07 TCGA-FG-8186-01 X 152807342 152807342 G A ATP2B3 Missense_Mutation p.V208M 0.03 deleterious(0) probably_damaging(0.968) TCGA-FG-8186-01 X 35966455 35966455 G A CXorf22 Missense_Mutation p.G181D 0.34 deleterious(0) probably_damaging(0.992) TCGA-FG-8186-01 X 35993797 35993797 C A CXorf22 Missense_Mutation p.T827N 0.38 tolerated(0.13) possibly_damaging(0.853) TCGA-FG-8186-01 X 41202025 41202025 T C DDX3X Missense_Mutation p.F160S 0.05 deleterious(0) probably_damaging(1) TCGA-FG-8187-01 10 16992025 16992025 G A CUBN Silent p.G1685G 0.28 TCGA-FG-8187-01 11 119025013 119025013 C T ABCG4 Missense_Mutation p.R134W 0.09 deleterious(0) probably_damaging(0.999) TCGA-FG-8187-01 11 56114203 56114203 C T OR8K1 Missense_Mutation p.A230V 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.517) TCGA-FG-8187-01 11 67397229 67397229 G A NUDT8 Missense_Mutation p.R52W 0.10 deleterious(0) probably_damaging(1) TCGA-FG-8187-01 12 98850610 98850610 C A SLC9A7P1 RNA 0.29 TCGA-FG-8187-01 13 101257337 101257339 AGG - TMTC4 In_Frame_Del p.S731del 0.09 TCGA-FG-8187-01 17 6703471 6703471 C T TEKT1 Missense_Mutation p.V378I 0.08 tolerated(0.28) benign(0.032) TCGA-FG-8187-01 19 19672911 19672911 G A PBX4 Nonsense_Mutation p.Q350* 0.14 TCGA-FG-8187-01 1 228528833 228528833 G A OBSCN Missense_Mutation p.R6869H 0.06 probably_damaging(0.984) TCGA-FG-8187-01 1 231155648 231155648 G A FAM89A Silent p.S172S 0.05 TCGA-FG-8187-01 1 41283890 41283890 G A KCNQ4 Missense_Mutation p.A154T 0.29 deleterious(0) probably_damaging(1) TCGA-FG-8187-01 1 46977833 46977833 G A DMBX1 Silent p.Q267Q 0.05 TCGA-FG-8187-01 21 43166845 43166845 C T RIPK4 Missense_Mutation p.A254T 0.43 tolerated(0.19) benign(0.102) TCGA-FG-8187-01 21 43411483 43411483 G A ZBTB21 Silent p.L908L 0.07 TCGA-FG-8187-01 2 128367552 128367552 G A MYO7B Silent p.E1051E 0.11 TCGA-FG-8187-01 2 177034190 177034190 A G HOXD3 Silent p.P116P 0.28 TCGA-FG-8187-01 2 207175936 207175936 G A ZDBF2 Silent p.S2228S 0.38 TCGA-FG-8187-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-8187-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.07 tolerated(0.11) possibly_damaging(0.529) TCGA-FG-8187-01 6 28053480 28053480 C T ZNF165 Silent p.C74C 0.05 TCGA-FG-8187-01 6 28116117 28116117 C G ZKSCAN8 5'UTR 0.29 TCGA-FG-8187-01 8 10755970 10755970 G A XKR6 Missense_Mutation p.A473V 0.06 deleterious(0) probably_damaging(0.996) TCGA-FG-8187-01 9 131186792 131186792 G A CERCAM Missense_Mutation p.R222Q 0.37 tolerated(0.05) benign(0.02) TCGA-FG-8188-01 10 73548698 73548698 A G CDH23 Missense_Mutation p.D1946G 0.34 tolerated(0.25) benign(0.096) TCGA-FG-8188-01 11 57003348 57003348 A G APLNR Silent p.L377L 0.39 TCGA-FG-8188-01 11 71166162 71166162 A G NADSYN1 Missense_Mutation p.E31G 0.29 tolerated(0.12) benign(0.021) TCGA-FG-8188-01 12 52680930 52680930 G A KRT81 Silent p.I401I 0.03 TCGA-FG-8188-01 15 33893721 33893721 C G RYR3 Silent p.L630L 0.44 TCGA-FG-8188-01 16 27786309 27786309 G A KIAA0556 Silent p.V1451V 0.15 TCGA-FG-8188-01 17 2909299 2909299 C T RAP1GAP2 Silent p.N441N 0.03 TCGA-FG-8188-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.44 deleterious(0) probably_damaging(0.998) TCGA-FG-8188-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.41 tolerated(0.1) benign(0.438) TCGA-FG-8188-01 17 79943447 79943447 C G ASPSCR1 Missense_Mutation p.T113S 0.04 tolerated(0.36) unknown(0) TCGA-FG-8188-01 19 1085938 1085938 C T HMHA1 Missense_Mutation p.P1131L 0.05 tolerated_low_confidence(0.34) benign(0.019) TCGA-FG-8188-01 1 12461735 12461735 T C VPS13D Silent p.F3953F 0.41 TCGA-FG-8188-01 1 38435137 38435137 C A SF3A3 Splice_Site p.X391_splice 0.31 TCGA-FG-8188-01 1 40782860 40782860 C T COL9A2 Missense_Mutation p.A4T 0.69 tolerated_low_confidence(0.5) unknown(0) TCGA-FG-8188-01 21 46117134 46117134 C T KRTAP10-12 Silent p.S6S 0.14 TCGA-FG-8188-01 2 103324661 103324661 C G SLC9A2 Missense_Mutation p.Q718E 0.16 tolerated(0.1) benign(0.103) TCGA-FG-8188-01 2 121997207 121997207 C T TFCP2L1 Missense_Mutation p.V263M 0.04 tolerated(0.27) benign(0.002) TCGA-FG-8188-01 2 179655479 179655479 C G TTN Missense_Mutation p.E586Q 0.04 TCGA-FG-8188-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-8188-01 2 70504434 70504434 C T PCYOX1 Silent p.N476N 0.05 TCGA-FG-8188-01 3 196096372 196096372 T A UBXN7 Missense_Mutation p.D209V 0.21 deleterious(0) probably_damaging(0.972) TCGA-FG-8188-01 3 7620372 7620372 T C GRM7 Silent p.I593I 0.07 TCGA-FG-8188-01 4 120243252 120243252 C T FABP2 Silent p.A2A 0.03 TCGA-FG-8188-01 4 183609326 183609326 T C TENM3 Silent p.C681C 0.37 TCGA-FG-8188-01 5 67569270 67569270 G A PIK3R1 Silent p.P129P 0.08 TCGA-FG-8188-01 5 67591086 67591086 A G PIK3R1 Missense_Mutation p.D560G 0.20 deleterious(0) probably_damaging(0.977) TCGA-FG-8188-01 5 76264637 76264637 G A CRHBP Missense_Mutation p.R299H 0.24 tolerated(0.2) benign(0.004) TCGA-FG-8188-01 6 49936551 49936551 C T DEFB113 Missense_Mutation p.E30K 0.12 tolerated_low_confidence(0.06) benign(0.021) TCGA-FG-8188-01 6 50011409 50011409 T C DEFB112 Missense_Mutation p.Y74C 0.32 deleterious(0.02) possibly_damaging(0.657) TCGA-FG-8188-01 6 50696680 50696680 G A TFAP2D Missense_Mutation p.R237H 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-FG-8188-01 6 83855297 83855297 A G DOPEY1 Missense_Mutation p.I1866V 0.37 tolerated(0.3) benign(0.013) TCGA-FG-8188-01 6 88239302 88239302 A C RARS2 Missense_Mutation p.V279G 0.27 deleterious(0) probably_damaging(0.937) TCGA-FG-8188-01 6 90661005 90661005 G A BACH2 Nonsense_Mutation p.Q274* 0.44 TCGA-FG-8188-01 7 140154921 140154922 TC - MKRN1 Frame_Shift_Del p.K404Sfs*20 0.26 TCGA-FG-8188-01 7 45222924 45222924 C T RAMP3 Silent p.I120I 0.05 TCGA-FG-8188-01 8 17396342 17396342 A G SLC7A2 Missense_Mutation p.I3M 0.20 benign(0.001) TCGA-FG-8188-01 8 48706915 48706915 T C PRKDC Missense_Mutation p.S3535G 0.38 probably_damaging(0.999) TCGA-FG-8188-01 8 53570054 53570054 C T RB1CC1 Missense_Mutation p.D779N 0.26 deleterious_low_confidence(0.05) benign(0.004) TCGA-FG-8188-01 X 132458383 132458383 G A GPC4 Silent p.R167R 0.19 TCGA-FG-8188-01 X 147010283 147010283 T C FMR1 Missense_Mutation p.F126S 0.14 deleterious(0) possibly_damaging(0.793) TCGA-FG-8188-01 X 23748659 23748659 G T ACOT9 Missense_Mutation p.L129I 0.77 deleterious(0.01) probably_damaging(0.95) TCGA-FG-8188-01 X 76939473 76939474 TT - ATRX Frame_Shift_Del p.K425Rfs*8 0.39 TCGA-FG-8189-01 11 40137057 40137057 G C LRRC4C Silent p.A262A 0.06 TCGA-FG-8189-01 11 69588192 69588192 T G FGF4 Missense_Mutation p.Y169S 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-FG-8189-01 15 90631839 90631839 T A IDH2 Missense_Mutation p.R172W 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-FG-8189-01 16 88779765 88779765 G T CTU2 Missense_Mutation p.K261N 0.05 deleterious(0) probably_damaging(0.996) TCGA-FG-8189-01 1 184863335 184863335 T C FAM129A Silent p.P64P 0.08 TCGA-FG-8189-01 2 220012390 220012390 G A NHEJ1 Missense_Mutation p.T173M 0.06 deleterious(0.04) benign(0.049) TCGA-FG-8189-01 5 41065560 41065560 C T MROH2B Silent p.E78E 0.05 TCGA-FG-8189-01 6 33632679 33632679 C A ITPR3 Missense_Mutation p.T394N 0.06 deleterious(0) possibly_damaging(0.868) TCGA-FG-8189-01 9 14845980 14845980 C A FREM1 Missense_Mutation p.Q457H 0.09 tolerated(0.09) benign(0.031) TCGA-FG-8189-01 X 106890921 106890921 G A PRPS1 Missense_Mutation p.A264T 0.08 deleterious(0.05) benign(0.004) TCGA-FG-8189-01 X 49093732 49093732 T G CCDC22 Splice_Site p.X76_splice 0.05 TCGA-FG-8191-01 10 102747246 102747246 G C MRPL43 5'UTR 0.42 TCGA-FG-8191-01 10 26432481 26432481 A G MYO3A Silent p.L789L 0.42 TCGA-FG-8191-01 11 64939962 64939962 A G SPDYC Silent p.P134P 0.35 TCGA-FG-8191-01 11 92714797 92714797 T C MTNR1B Silent p.I136I 0.09 TCGA-FG-8191-01 14 89093251 89093251 G C EML5 Missense_Mutation p.S1557R 0.37 tolerated(0.39) benign(0.182) TCGA-FG-8191-01 15 32917835 32917835 G C ARHGAP11A Splice_Site p.X288_splice 0.07 TCGA-FG-8191-01 16 598068 598068 C T CAPN15 Silent p.P410P 0.41 TCGA-FG-8191-01 16 70594469 70594469 G A SF3B3 Missense_Mutation p.R703Q 0.05 tolerated(0.28) benign(0.024) TCGA-FG-8191-01 17 42483311 42483311 C G GPATCH8 Missense_Mutation p.E201Q 0.12 deleterious(0) probably_damaging(0.983) TCGA-FG-8191-01 17 64738870 64738870 G A PRKCA Missense_Mutation p.A506T 0.31 deleterious(0) probably_damaging(0.948) TCGA-FG-8191-01 17 7579350 7579350 A C TP53 Missense_Mutation p.F113V 0.66 deleterious(0) probably_damaging(1) TCGA-FG-8191-01 18 30322013 30322013 C A KLHL14 Splice_Site p.X316_splice 0.13 TCGA-FG-8191-01 19 43382350 43382350 T C PSG1 Missense_Mutation p.K49E 0.11 deleterious(0.01) benign(0.066) TCGA-FG-8191-01 19 53958931 53958931 C G ZNF761 RNA 0.08 TCGA-FG-8191-01 1 16532496 16532496 C T ARHGEF19 Missense_Mutation p.A461T 0.17 tolerated(0.43) possibly_damaging(0.825) TCGA-FG-8191-01 1 177909803 177909803 C T SEC16B Missense_Mutation p.R690H 0.48 tolerated(0.15) benign(0.11) TCGA-FG-8191-01 1 236144995 236144995 G A NID1 Missense_Mutation p.A1048V 0.36 deleterious(0) probably_damaging(0.984) TCGA-FG-8191-01 1 237754205 237754205 G A RYR2 Missense_Mutation p.R1358H 0.22 benign(0.197) TCGA-FG-8191-01 1 35476495 35476495 C T ZMYM6 Missense_Mutation p.R402H 0.09 tolerated(0.06) benign(0.115) TCGA-FG-8191-01 20 5902992 5902992 G A CHGB Missense_Mutation p.V68I 0.11 tolerated(0.53) benign(0.061) TCGA-FG-8191-01 2 141607789 141607789 G A LRP1B Silent p.D1607D 0.17 TCGA-FG-8191-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-8191-01 3 98073379 98073379 A T OR5K4 Missense_Mutation p.M228L 0.08 deleterious(0.03) benign(0.292) TCGA-FG-8191-01 5 53815358 53815358 C G SNX18 Missense_Mutation p.Q526E 0.05 deleterious(0.01) possibly_damaging(0.828) TCGA-FG-8191-01 6 118588282 118588282 G A SLC35F1 Missense_Mutation p.G201E 0.04 deleterious(0.02) probably_damaging(0.986) TCGA-FG-8191-01 6 56468169 56468169 A G DST Intron 0.30 TCGA-FG-8191-01 6 82912294 82912294 A G IBTK Missense_Mutation p.S894P 0.10 deleterious(0.01) probably_damaging(0.929) TCGA-FG-8191-01 7 142562152 142562152 G A EPHB6 Silent p.E198E 0.04 TCGA-FG-8191-01 8 23539038 23539038 G A NKX3-1 Missense_Mutation p.T134I 0.10 deleterious(0) probably_damaging(0.979) TCGA-FG-8191-01 9 72000864 72000864 G T FAM189A2 Splice_Site p.X286_splice 0.29 TCGA-FG-8191-01 X 47082981 47082981 C T CDK16 Missense_Mutation p.R83W 0.13 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-FG-8191-01 X 76909629 76909629 G A ATRX Nonsense_Mutation p.R1426* 0.73 TCGA-FG-A4MT-01 10 103899573 103899573 G A PPRC1 Silent p.P436P 0.12 TCGA-FG-A4MT-01 10 112269864 112269864 A G DUSP5 Missense_Mutation p.M279V 0.40 deleterious(0) possibly_damaging(0.646) TCGA-FG-A4MT-01 10 77159074 77159074 C T ZNF503 Silent p.A458A 0.47 TCGA-FG-A4MT-01 11 67050273 67050273 G A ADRBK1 Missense_Mutation p.R404H 0.09 deleterious(0.01) benign(0.019) TCGA-FG-A4MT-01 12 49418711 49418711 A G KMT2D Missense_Mutation p.I5268T 0.62 unknown(0) TCGA-FG-A4MT-01 17 16471071 16471071 G A ZNF287 5'UTR 0.10 TCGA-FG-A4MT-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.39 deleterious(0) probably_damaging(0.993) TCGA-FG-A4MT-01 17 7578412 7578412 A G TP53 Missense_Mutation p.V173A 0.48 deleterious(0) probably_damaging(1) TCGA-FG-A4MT-01 18 21426422 21426422 G A LAMA3 Missense_Mutation p.R1294Q 0.33 possibly_damaging(0.477) TCGA-FG-A4MT-01 19 9084692 9084692 T C MUC16 Missense_Mutation p.N2375D 0.24 unknown(0) TCGA-FG-A4MT-01 1 247875306 247875306 C T OR6F1 Nonsense_Mutation p.W251* 0.49 TCGA-FG-A4MT-01 1 25881422 25881422 C A LDLRAP1 Missense_Mutation p.D101E 0.10 deleterious(0.02) possibly_damaging(0.68) TCGA-FG-A4MT-01 22 43870673 43870673 A G MPPED1 Missense_Mutation p.D155G 0.34 deleterious(0) probably_damaging(0.984) TCGA-FG-A4MT-01 2 179481731 179481731 G A TTN Missense_Mutation p.T15962I 0.40 TCGA-FG-A4MT-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A4MT-01 4 143191848 143191848 C T INPP4B Missense_Mutation p.D195N 0.41 tolerated(0.07) possibly_damaging(0.883) TCGA-FG-A4MT-01 6 29523936 29523936 G T UBD Silent p.T73T 0.08 TCGA-FG-A4MT-01 6 7580531 7580531 A T DSP Missense_Mutation p.I1370F 0.40 probably_damaging(0.99) TCGA-FG-A4MT-01 7 98508848 98508848 C T TRRAP Missense_Mutation p.T654M 0.22 probably_damaging(0.943) TCGA-FG-A4MT-01 X 140785682 140785682 G T SPANXD Missense_Mutation p.N78K 0.06 deleterious(0.01) probably_damaging(0.995) TCGA-FG-A4MT-01 X 76855014 76855017 CTAT - ATRX Frame_Shift_Del p.D1940Vfs*14 0.38 TCGA-FG-A4MU-01 11 1102176 1102176 C T MUC2 Silent p.H2604H 0.45 TCGA-FG-A4MU-01 11 1298448 1298448 C T TOLLIP Missense_Mutation p.V216M 0.52 tolerated(0.15) benign(0.004) TCGA-FG-A4MU-01 11 130340895 130340895 G A ADAMTS15 Missense_Mutation p.V601M 0.43 tolerated(0.05) benign(0.144) TCGA-FG-A4MU-01 11 19077575 19077575 G A MRGPRX2 Silent p.T125T 0.38 TCGA-FG-A4MU-01 11 46419176 46419176 G A AMBRA1 Missense_Mutation p.R1151W 0.41 deleterious_low_confidence(0) benign(0.001) TCGA-FG-A4MU-01 11 56185615 56185615 A G OR5R1 Silent p.L32L 0.45 TCGA-FG-A4MU-01 11 6953559 6953559 G A ZNF215 Missense_Mutation p.R19H 0.46 tolerated(1) benign(0) TCGA-FG-A4MU-01 11 93796832 93796832 G A HEPHL1 Missense_Mutation p.A192T 0.44 tolerated(0.25) possibly_damaging(0.462) TCGA-FG-A4MU-01 12 110234444 110234444 G A TRPV4 Silent p.F406F 0.40 TCGA-FG-A4MU-01 12 7635288 7635288 G A CD163 Silent p.V1066V 0.45 TCGA-FG-A4MU-01 14 31576337 31576337 G A HECTD1 Silent p.F2247F 0.43 TCGA-FG-A4MU-01 14 50206884 50206885 - A KLHDC1 Frame_Shift_Ins p.L323Tfs*9 0.33 TCGA-FG-A4MU-01 14 50735882 50735882 G A L2HGDH Missense_Mutation p.P302L 0.40 deleterious(0) probably_damaging(1) TCGA-FG-A4MU-01 14 91770249 91770249 G A CCDC88C Missense_Mutation p.T1144M 0.44 deleterious(0) possibly_damaging(0.479) TCGA-FG-A4MU-01 15 37109983 37109983 G A CSNK1A1P1 RNA 0.32 TCGA-FG-A4MU-01 15 78730692 78730692 A G IREB2 Missense_Mutation p.K5E 0.47 tolerated(0.84) benign(0.003) TCGA-FG-A4MU-01 15 86940603 86940603 G A AGBL1 Missense_Mutation p.R748H 0.38 deleterious(0) probably_damaging(0.998) TCGA-FG-A4MU-01 16 15609218 15609218 C A C16orf45 Missense_Mutation p.L55M 0.40 tolerated(0.29) probably_damaging(0.999) TCGA-FG-A4MU-01 16 2820396 2820396 C A SRRM2 Silent p.R2689R 0.50 TCGA-FG-A4MU-01 17 10267760 10267760 G A MYH13 Missense_Mutation p.R30C 0.50 deleterious(0.01) probably_damaging(0.992) TCGA-FG-A4MU-01 17 3181586 3181586 A G OR3A2 Missense_Mutation p.M215T 0.39 deleterious(0.01) benign(0.315) TCGA-FG-A4MU-01 17 71344740 71344741 GA - SDK2 Frame_Shift_Del p.Q2055Gfs*3 0.27 TCGA-FG-A4MU-01 18 34298551 34298551 A G FHOD3 Missense_Mutation p.D922G 0.42 tolerated(0.27) benign(0.033) TCGA-FG-A4MU-01 19 12089769 12089769 G A ZNF763 Missense_Mutation p.E347K 0.33 tolerated(0.45) benign(0) TCGA-FG-A4MU-01 19 12841862 12841862 G A C19orf43 Silent p.D148D 0.31 TCGA-FG-A4MU-01 19 14674491 14674491 G A TECR Missense_Mutation p.R47H 0.34 deleterious(0.04) benign(0.127) TCGA-FG-A4MU-01 19 15063753 15063753 C T SLC1A6 Missense_Mutation p.V496M 0.36 deleterious(0.01) probably_damaging(0.984) TCGA-FG-A4MU-01 19 38942436 38942436 C T RYR1 Silent p.D385D 0.29 TCGA-FG-A4MU-01 19 46313896 46313896 C T RSPH6A Missense_Mutation p.G285S 0.28 tolerated(0.62) benign(0.009) TCGA-FG-A4MU-01 19 54849686 54849686 G A LILRA4 Silent p.P112P 0.29 TCGA-FG-A4MU-01 19 7812221 7812221 C T CD209 Missense_Mutation p.R26Q 0.28 tolerated(0.49) benign(0.003) TCGA-FG-A4MU-01 1 118516183 118516183 T C SPAG17 Silent p.E2002E 0.48 TCGA-FG-A4MU-01 1 155296536 155296536 C T RUSC1 Missense_Mutation p.P676L 0.41 tolerated(0.06) benign(0.004) TCGA-FG-A4MU-01 1 172579290 172579290 T G SUCO Missense_Mutation p.L1219R 0.39 deleterious(0) probably_damaging(0.993) TCGA-FG-A4MU-01 1 233150466 233150466 G A PCNXL2 Silent p.L1633L 0.34 TCGA-FG-A4MU-01 1 248637422 248637422 C T OR2T3 Silent p.F257F 0.12 TCGA-FG-A4MU-01 1 248737288 248737288 G A OR2T34 Silent p.F257F 0.42 TCGA-FG-A4MU-01 21 19716359 19716359 G T TMPRSS15 Missense_Mutation p.P397Q 0.49 deleterious(0.01) probably_damaging(0.968) TCGA-FG-A4MU-01 22 32643471 32643471 C T SLC5A4 Missense_Mutation p.R135Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-FG-A4MU-01 22 38329071 38329071 C T MICALL1 Missense_Mutation p.R754C 0.36 deleterious(0) probably_damaging(0.982) TCGA-FG-A4MU-01 2 109400287 109400287 T C RANBP2 Missense_Mutation p.I3202T 0.41 deleterious(0) probably_damaging(0.984) TCGA-FG-A4MU-01 2 116525951 116525951 T A DPP10 Missense_Mutation p.F402I 0.42 deleterious(0) possibly_damaging(0.803) TCGA-FG-A4MU-01 2 1457595 1457595 G A TPO Silent p.P204P 0.54 TCGA-FG-A4MU-01 2 182468728 182468728 C T CERKL Missense_Mutation p.R106H 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-FG-A4MU-01 2 219893020 219893020 C T CCDC108 Missense_Mutation p.R585Q 0.46 deleterious(0.01) probably_damaging(0.946) TCGA-FG-A4MU-01 2 220379714 220379714 C T ASIC4 Missense_Mutation p.R217W 0.42 tolerated(0.18) probably_damaging(0.954) TCGA-FG-A4MU-01 2 231331885 231331885 G A SP100 Missense_Mutation p.A416T 0.45 tolerated(0.71) benign(0.034) TCGA-FG-A4MU-01 2 234590757 234590757 C T UGT1A7 Silent p.V58V 0.46 TCGA-FG-A4MU-01 2 58358955 58358955 G A VRK2 Missense_Mutation p.R230Q 0.46 deleterious(0) probably_damaging(1) TCGA-FG-A4MU-01 3 169540471 169540471 C T LRRIQ4 Silent p.A254A 0.37 TCGA-FG-A4MU-01 3 194408803 194408803 T C FAM43A Silent p.S416S 0.50 TCGA-FG-A4MU-01 4 265912 265912 G A ZNF732 Missense_Mutation p.T245I 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-FG-A4MU-01 5 127800539 127800539 G A FBN2 Missense_Mutation p.T235M 0.39 deleterious(0) probably_damaging(0.981) TCGA-FG-A4MU-01 5 39364519 39364519 T A C9 Silent p.I16I 0.28 TCGA-FG-A4MU-01 5 82816827 82816827 C T VCAN Missense_Mutation p.T901I 0.50 tolerated(0.26) benign(0.011) TCGA-FG-A4MU-01 5 89933730 89933730 G A GPR98 Silent p.P735P 0.39 TCGA-FG-A4MU-01 6 138575103 138575103 G A KIAA1244 Missense_Mutation p.R251H 0.33 tolerated(0.52) benign(0) TCGA-FG-A4MU-01 6 34004320 34004320 G A GRM4 Missense_Mutation p.P523S 0.46 deleterious(0.01) possibly_damaging(0.825) TCGA-FG-A4MU-01 6 36979617 36979617 C T FGD2 Missense_Mutation p.R172C 0.43 tolerated(0.08) probably_damaging(1) TCGA-FG-A4MU-01 6 70972973 70972973 C T COL9A1 Missense_Mutation p.G457R 0.27 probably_damaging(1) TCGA-FG-A4MU-01 6 71501425 71501425 G T SMAP1 Missense_Mutation p.V150L 0.44 tolerated(0.73) benign(0.003) TCGA-FG-A4MU-01 7 27187208 27187208 G T HOXA6 Nonsense_Mutation p.S54* 0.26 TCGA-FG-A4MU-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.96 deleterious(0) possibly_damaging(0.75) TCGA-FG-A4MU-01 7 82582077 82582077 C T PCLO Missense_Mutation p.R2731H 0.30 unknown(0) TCGA-FG-A4MU-01 7 97874267 97874267 G C TECPR1 Missense_Mutation p.S113W 0.17 deleterious(0) probably_damaging(1) TCGA-FG-A4MU-01 7 99758141 99758141 G T GAL3ST4 Missense_Mutation p.L291M 0.28 deleterious(0.04) probably_damaging(0.975) TCGA-FG-A4MU-01 8 139890331 139890331 C T COL22A1 Missense_Mutation p.R107H 0.46 unknown(0) TCGA-FG-A4MU-01 8 144995970 144995970 C T PLEC Silent p.A2810A 0.54 TCGA-FG-A4MU-01 8 21965732 21965732 C T NUDT18 Silent p.A96A 0.20 TCGA-FG-A4MU-01 8 55370802 55370802 C A SOX17 Nonsense_Mutation p.S35* 0.39 TCGA-FG-A4MU-01 8 55370804 55370804 C T SOX17 Silent p.L36L 0.35 TCGA-FG-A4MU-01 8 55538939 55538939 T A RP1 Missense_Mutation p.F833I 0.38 deleterious(0.04) benign(0.245) TCGA-FG-A4MU-01 8 97156959 97156959 G A GDF6 Silent p.H400H 0.06 TCGA-FG-A4MU-01 9 134353210 134353210 G A PRRC2B Missense_Mutation p.A1496T 0.63 tolerated(0.23) benign(0.005) TCGA-FG-A4MU-01 9 137701113 137701113 C A COL5A1 Missense_Mutation p.P1151T 0.31 unknown(0) TCGA-FG-A4MU-01 X 104464686 104464686 G T TEX13A Silent p.A132A 1.00 TCGA-FG-A4MU-01 X 153693430 153693430 C T PLXNA3 Missense_Mutation p.R705W 1.00 deleterious(0) probably_damaging(0.947) TCGA-FG-A4MW-01 10 88418318 88418318 C T OPN4 Missense_Mutation p.R179C 0.49 deleterious(0.01) possibly_damaging(0.884) TCGA-FG-A4MW-01 10 89624256 89624256 C G PTEN Missense_Mutation p.S10R 0.53 deleterious(0) possibly_damaging(0.882) TCGA-FG-A4MW-01 11 130343421 130343421 C T ADAMTS15 Missense_Mutation p.A853V 0.32 tolerated(0.39) benign(0.001) TCGA-FG-A4MW-01 11 55110940 55110940 C T OR4A16 Silent p.I88I 0.37 TCGA-FG-A4MW-01 11 62997040 62997040 C T SLC22A25 Missense_Mutation p.V29I 0.27 tolerated(0.82) benign(0.001) TCGA-FG-A4MW-01 11 7324401 7324401 G C SYT9 Missense_Mutation p.D93H 0.30 tolerated(0.27) possibly_damaging(0.461) TCGA-FG-A4MW-01 12 110656050 110656050 G - IFT81 3'UTR 0.30 TCGA-FG-A4MW-01 12 112647838 112647838 G A HECTD4 Silent p.A2470A 0.26 TCGA-FG-A4MW-01 12 11420899 11420899 C T PRB3 Missense_Mutation p.R95H 0.31 tolerated(0.22) unknown(0) TCGA-FG-A4MW-01 12 54339060 54339060 C T HOXC13 3'UTR 0.19 TCGA-FG-A4MW-01 14 35872895 35872895 C T NFKBIA Splice_Site p.X112_splice 0.29 TCGA-FG-A4MW-01 14 70515655 70515655 C T SLC8A3 Missense_Mutation p.V746M 0.24 deleterious(0.01) probably_damaging(0.989) TCGA-FG-A4MW-01 14 77844618 77844618 C T SAMD15 Missense_Mutation p.P286L 0.35 tolerated(0.14) benign(0.043) TCGA-FG-A4MW-01 14 93276685 93276685 C T GOLGA5 Missense_Mutation p.T360I 0.34 deleterious(0.05) benign(0.15) TCGA-FG-A4MW-01 14 95090030 95090030 C T SERPINA3 Missense_Mutation p.S384F 0.38 deleterious(0.03) benign(0.212) TCGA-FG-A4MW-01 15 52534268 52534268 G A MYO5C Silent p.L845L 0.55 TCGA-FG-A4MW-01 15 63032969 63032969 G A TLN2 Splice_Site p.X1342_splice 0.48 TCGA-FG-A4MW-01 15 74281475 74281475 G A STOML1 Nonsense_Mutation p.R122* 0.11 TCGA-FG-A4MW-01 16 10574741 10574741 C T ATF7IP2 Missense_Mutation p.P519S 0.27 tolerated(0.39) benign(0.046) TCGA-FG-A4MW-01 16 15022262 15022262 C T RP11-958N24.1 RNA 0.36 TCGA-FG-A4MW-01 16 2522817 2522817 C T NTN3 Silent p.R348R 0.42 TCGA-FG-A4MW-01 16 62055202 62055202 G A CDH8 Nonsense_Mutation p.Q36* 0.23 TCGA-FG-A4MW-01 16 62055208 62055208 G A CDH8 Nonsense_Mutation p.Q34* 0.28 TCGA-FG-A4MW-01 16 72166638 72166638 G A PMFBP1 Intron 0.21 TCGA-FG-A4MW-01 16 81925184 81925184 G A PLCG2 Silent p.S325S 0.36 TCGA-FG-A4MW-01 16 81953229 81953229 G A PLCG2 Missense_Mutation p.R732H 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-FG-A4MW-01 16 82104638 82104638 C T HSD17B2 Silent p.A190A 0.28 TCGA-FG-A4MW-01 17 10430103 10430103 C T MYH2 Missense_Mutation p.A1334T 0.37 tolerated(0.05) benign(0.073) TCGA-FG-A4MW-01 17 26864332 26864332 G C FOXN1 Missense_Mutation p.G609R 0.33 deleterious(0.01) possibly_damaging(0.873) TCGA-FG-A4MW-01 17 60483969 60483969 C T EFCAB3 Missense_Mutation p.A258V 0.33 tolerated(0.38) possibly_damaging(0.851) TCGA-FG-A4MW-01 17 61864442 61864442 G A DDX42 Silent p.K11K 0.32 TCGA-FG-A4MW-01 17 66391215 66391215 G A ARSG Missense_Mutation p.V365M 0.36 tolerated(0.09) benign(0.16) TCGA-FG-A4MW-01 17 76851869 76851869 C T TIMP2 Silent p.K181K 0.36 TCGA-FG-A4MW-01 18 10671755 10671755 T A PIEZO2 Silent p.S2676S 0.37 TCGA-FG-A4MW-01 18 24445621 24445621 C A AQP4 Splice_Site p.X11_splice 0.18 TCGA-FG-A4MW-01 18 34156464 34156464 C T FHOD3 Missense_Mutation p.R188C 0.40 deleterious(0) benign(0.014) TCGA-FG-A4MW-01 18 46284511 46284511 G A CTIF Missense_Mutation p.R269H 0.51 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-FG-A4MW-01 18 56816768 56816768 C T SEC11C Silent p.F37F 0.33 TCGA-FG-A4MW-01 18 61449715 61449715 G A SERPINB7 Missense_Mutation p.A37T 0.33 tolerated(1) benign(0.001) TCGA-FG-A4MW-01 18 74667996 74667996 G A ZNF236 Missense_Mutation p.R1655Q 0.39 tolerated(0.28) benign(0.298) TCGA-FG-A4MW-01 19 1053821 1053821 A C ABCA7 Missense_Mutation p.D1153A 0.18 deleterious(0.04) benign(0.008) TCGA-FG-A4MW-01 19 15052351 15052351 C T OR7C2 Silent p.F17F 0.25 TCGA-FG-A4MW-01 19 1785489 1785489 G A ATP8B3 Silent p.C1124C 0.16 TCGA-FG-A4MW-01 19 22847685 22847685 C T ZNF492 Missense_Mutation p.S405L 0.14 tolerated(0.21) benign(0.001) TCGA-FG-A4MW-01 19 36046393 36046393 C T ATP4A Silent p.A702A 0.23 TCGA-FG-A4MW-01 19 38103617 38103617 G A ZNF540 Missense_Mutation p.R479H 0.27 tolerated(0.62) benign(0.003) TCGA-FG-A4MW-01 19 40900042 40900043 TT - PRX Frame_Shift_Del p.K1406Vfs*81 0.16 TCGA-FG-A4MW-01 19 41268829 41268829 G A SNRPA Silent p.A150A 0.33 TCGA-FG-A4MW-01 19 44681060 44681060 C T ZNF226 Missense_Mutation p.H549Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-FG-A4MW-01 19 757391 757391 G A MISP Missense_Mutation p.G149S 0.25 tolerated(0.18) benign(0.426) TCGA-FG-A4MW-01 19 8389602 8389602 G A KANK3 Missense_Mutation p.A732V 0.25 deleterious(0) possibly_damaging(0.695) TCGA-FG-A4MW-01 1 120254648 120254648 G A PHGDH Translation_Start_Site p.M1? 0.29 deleterious(0.01) possibly_damaging(0.509) TCGA-FG-A4MW-01 1 152671572 152671572 C T LCE2A Silent p.G65G 0.39 TCGA-FG-A4MW-01 1 156884576 156884576 C T PEAR1 Missense_Mutation p.R1034C 0.29 deleterious(0.04) possibly_damaging(0.874) TCGA-FG-A4MW-01 1 180240959 180240959 T C LHX4 Intron 0.14 TCGA-FG-A4MW-01 1 203818970 203818971 - G ZC3H11A Frame_Shift_Ins p.A586Gfs*61 0.22 TCGA-FG-A4MW-01 1 22852748 22852748 G A ZBTB40 Silent p.E1193E 0.17 TCGA-FG-A4MW-01 1 45294292 45294292 G A PTCH2 Silent p.G492G 0.33 TCGA-FG-A4MW-01 1 75596271 75596271 T G LHX8 5'UTR 0.29 TCGA-FG-A4MW-01 20 13280078 13280078 A G ISM1 Missense_Mutation p.K456R 0.37 tolerated(0.45) benign(0.177) TCGA-FG-A4MW-01 20 19945627 19945627 C T RIN2 Silent p.F214F 0.26 TCGA-FG-A4MW-01 21 15352074 15352074 C T ANKRD20A11P RNA 0.31 TCGA-FG-A4MW-01 22 24451502 24451502 A G CABIN1 Missense_Mutation p.S325G 0.27 tolerated(0.12) benign(0.101) TCGA-FG-A4MW-01 2 128707774 128707776 CAC - SAP130 In_Frame_Del p.V903del 0.27 TCGA-FG-A4MW-01 2 186670853 186670853 G A FSIP2 Missense_Mutation p.G5696D 0.27 benign(0.001) TCGA-FG-A4MW-01 2 32461395 32461395 G A NLRC4 Silent p.H845H 0.29 TCGA-FG-A4MW-01 2 3691388 3691388 G A COLEC11 Missense_Mutation p.A180T 0.26 deleterious(0) probably_damaging(0.999) TCGA-FG-A4MW-01 2 90121979 90121979 C A IGKV1D-17 Missense_Mutation p.P66H 0.05 deleterious(0) probably_damaging(0.991) TCGA-FG-A4MW-01 3 151475059 151475062 TATG - AADACL2 Frame_Shift_Del p.V296Ifs*36 0.29 TCGA-FG-A4MW-01 3 164907844 164907844 T C SLITRK3 Missense_Mutation p.I259V 0.06 tolerated(1) benign(0.054) TCGA-FG-A4MW-01 3 29977603 29977603 C T RBMS3 Silent p.D322D 0.23 TCGA-FG-A4MW-01 3 58080624 58080624 C T FLNB Silent p.S283S 0.28 TCGA-FG-A4MW-01 4 111398156 111398156 C A ENPEP Missense_Mutation p.L196M 0.28 tolerated(0.08) possibly_damaging(0.84) TCGA-FG-A4MW-01 4 145579961 145579961 G A HHIP Silent p.A164A 0.20 TCGA-FG-A4MW-01 4 185678385 185678385 G A ACSL1 Missense_Mutation p.S664F 0.41 deleterious(0) probably_damaging(0.913) TCGA-FG-A4MW-01 4 6304060 6304060 C T WFS1 Silent p.S846S 0.34 TCGA-FG-A4MW-01 5 153078545 153078545 G A GRIA1 Missense_Mutation p.R465H 0.30 deleterious(0.01) possibly_damaging(0.82) TCGA-FG-A4MW-01 5 41149449 41149449 G A C6 Silent p.D839D 0.34 TCGA-FG-A4MW-01 5 82937339 82937339 G A HAPLN1 Silent p.V347V 0.12 TCGA-FG-A4MW-01 6 155450785 155450785 G A TIAM2 Missense_Mutation p.R143K 0.34 tolerated_low_confidence(1) benign(0.001) TCGA-FG-A4MW-01 6 33052887 33052887 C A HLA-DPB1 Silent p.I175I 0.27 TCGA-FG-A4MW-01 7 117424371 117424371 C T CTTNBP2 Missense_Mutation p.D736N 0.23 tolerated(0.1) probably_damaging(1) TCGA-FG-A4MW-01 7 142627452 142627452 C T TRPV5 Missense_Mutation p.R73Q 0.31 tolerated(0.3) benign(0.015) TCGA-FG-A4MW-01 7 2983911 2983911 G A CARD11 Missense_Mutation p.R207C 0.16 deleterious(0.01) possibly_damaging(0.901) TCGA-FG-A4MW-01 7 55223567 55223567 G T EGFR Missense_Mutation p.G312W 0.91 deleterious(0) possibly_damaging(0.86) TCGA-FG-A4MW-01 7 56007266 56007266 A C ZNF713 Missense_Mutation p.H287P 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-FG-A4MW-01 7 90377064 90377064 T C CDK14 Silent p.Y128Y 0.23 TCGA-FG-A4MW-01 7 99027240 99027240 C T ATP5J2-PTCD1 Missense_Mutation p.D311N 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-FG-A4MW-01 8 24207446 24207446 G A ADAM28 Missense_Mutation p.R687Q 0.33 tolerated(0.13) benign(0.033) TCGA-FG-A4MW-01 8 25702020 25702020 G A EBF2 3'UTR 0.31 TCGA-FG-A4MW-01 8 33356082 33356082 C A MAK16 Silent p.R280R 0.22 TCGA-FG-A4MW-01 9 130587089 130587089 G A ENG Silent p.A327A 0.56 TCGA-FG-A4MW-01 9 2648302 2648302 G A VLDLR Silent p.K639K 0.09 TCGA-FG-A4MW-01 9 79318755 79318758 CTAA - PRUNE2 Frame_Shift_Del p.L2591Qfs*12 0.22 TCGA-FG-A4MW-01 9 95228797 95228797 G A ASPN Silent p.T148T 0.39 TCGA-FG-A4MW-01 X 118284501 118284501 G A KIAA1210 Silent p.H14H 0.75 TCGA-FG-A4MW-01 X 148798319 148798319 C T MAGEA11 Silent p.H391H 0.71 TCGA-FG-A4MW-01 X 1748790 1748790 G A ASMT Missense_Mutation p.A174T 0.35 deleterious(0.01) possibly_damaging(0.726) TCGA-FG-A4MW-01 Y 6911098 6911098 C T TBL1Y Missense_Mutation p.P46S 0.58 deleterious(0.04) probably_damaging(0.998) TCGA-FG-A4MX-01 10 105185105 105185105 T C PDCD11 Missense_Mutation p.V1043A 0.07 deleterious(0) probably_damaging(0.936) TCGA-FG-A4MX-01 10 95557288 95557288 A G LGI1 Missense_Mutation p.I468V 0.56 tolerated(1) benign(0.002) TCGA-FG-A4MX-01 11 89774633 89774633 T C TRIM49C Missense_Mutation p.V425A 0.12 deleterious(0.02) benign(0.383) TCGA-FG-A4MX-01 13 20656935 20656935 C T ZMYM2 Nonsense_Mutation p.R1195* 0.55 TCGA-FG-A4MX-01 14 22409569 22409569 G C TRAV9-2 Missense_Mutation p.G20A 0.62 deleterious(0.01) possibly_damaging(0.775) TCGA-FG-A4MX-01 15 59409442 59409442 C T CCNB2 Missense_Mutation p.H284Y 0.19 deleterious(0.02) possibly_damaging(0.567) TCGA-FG-A4MX-01 15 73028230 73028230 G A BBS4 Missense_Mutation p.A391T 0.08 deleterious(0.01) possibly_damaging(0.465) TCGA-FG-A4MX-01 16 30972585 30972585 C T SETD1A Intron 0.14 TCGA-FG-A4MX-01 17 7385920 7385920 G A SLC35G6 Missense_Mutation p.G206E 0.36 tolerated(0.12) benign(0.014) TCGA-FG-A4MX-01 17 7578466 7578466 G T TP53 Missense_Mutation p.T155N 0.87 deleterious(0.01) possibly_damaging(0.731) TCGA-FG-A4MX-01 18 43534467 43534467 T C EPG5 Missense_Mutation p.R301G 0.50 deleterious(0) probably_damaging(0.943) TCGA-FG-A4MX-01 19 17845207 17845207 C T MAP1S Silent p.D1050D 0.29 TCGA-FG-A4MX-01 19 41190411 41190411 G C NUMBL Missense_Mutation p.P54A 0.36 tolerated(0.14) possibly_damaging(0.811) TCGA-FG-A4MX-01 19 47910360 47910360 T C MEIS3 Missense_Mutation p.M370V 0.40 deleterious(0.03) benign(0.412) TCGA-FG-A4MX-01 22 38258980 38258980 G A EIF3L Missense_Mutation p.G147E 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.613) TCGA-FG-A4MX-01 2 17699300 17699300 C A RAD51AP2 Missense_Mutation p.R128M 0.22 deleterious(0.01) possibly_damaging(0.794) TCGA-FG-A4MX-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A4MX-01 2 29222093 29222093 G A FAM179A Silent p.P62P 0.48 TCGA-FG-A4MX-01 3 45811778 45811778 C T SLC6A20 Missense_Mutation p.A341T 0.06 tolerated(0.1) benign(0.022) TCGA-FG-A4MX-01 5 31526303 31526303 G A DROSHA Missense_Mutation p.S246F 0.44 tolerated_low_confidence(0.66) benign(0.193) TCGA-FG-A4MX-01 6 111694047 111694050 TAAA - REV3L Frame_Shift_Del p.D1836Efs*12 0.30 TCGA-FG-A4MX-01 6 27101298 27101298 C A HIST1H2AG 3'UTR 0.55 TCGA-FG-A4MX-01 7 117232112 117232112 T C CFTR Missense_Mutation p.S631P 0.51 tolerated(0.12) benign(0.009) TCGA-FG-A4MX-01 7 127240376 127240376 T C FSCN3 Missense_Mutation p.Y474H 0.28 deleterious(0) probably_damaging(0.997) TCGA-FG-A4MX-01 8 118842536 118842536 T C EXT1 Missense_Mutation p.Q406R 0.67 deleterious(0) benign(0.33) TCGA-FG-A4MX-01 9 137328472 137328472 C T RXRA 3'UTR 0.06 TCGA-FG-A4MX-01 9 14805068 14805068 G T FREM1 Missense_Mutation p.D1119E 0.10 deleterious(0) probably_damaging(0.999) TCGA-FG-A4MX-01 X 76855965 76855965 A C ATRX Missense_Mutation p.L1879V 0.83 probably_damaging(0.999) TCGA-FG-A4MX-01 X 99551565 99551565 G A PCDH19 Missense_Mutation p.R1053W 0.11 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-FG-A4MY-01 10 22618234 22618234 A G BMI1 Silent p.E248E 0.07 TCGA-FG-A4MY-01 11 48152190 48152190 A G PTPRJ Missense_Mutation p.T513A 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-FG-A4MY-01 12 131466566 131466566 C T GPR133 Missense_Mutation p.R150W 0.22 deleterious(0) probably_damaging(0.993) TCGA-FG-A4MY-01 12 9232315 9232315 A C A2M Missense_Mutation p.I984S 0.35 deleterious(0) probably_damaging(0.988) TCGA-FG-A4MY-01 15 100331300 100331300 G A AC090825.1 5'Flank 0.46 TCGA-FG-A4MY-01 17 51901156 51901156 C A KIF2B Missense_Mutation p.D254E 0.24 deleterious(0) probably_damaging(0.999) TCGA-FG-A4MY-01 17 72791232 72791232 C G TMEM104 Missense_Mutation p.S170C 0.21 deleterious(0) probably_damaging(0.998) TCGA-FG-A4MY-01 17 7481686 7481686 G A EIF4A1 Missense_Mutation p.R368H 0.09 deleterious(0.02) benign(0.071) TCGA-FG-A4MY-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.58 deleterious(0) probably_damaging(0.995) TCGA-FG-A4MY-01 19 12256579 12256579 G A ZNF625 Missense_Mutation p.P218S 0.08 deleterious(0.02) probably_damaging(0.91) TCGA-FG-A4MY-01 21 11029693 11029693 C T BAGE2 RNA 0.09 TCGA-FG-A4MY-01 2 179592490 179592490 T C TTN Missense_Mutation p.I6605M 0.08 TCGA-FG-A4MY-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A4MY-01 2 233243710 233243710 C T ALPP Missense_Mutation p.R36C 0.08 deleterious(0.01) benign(0.003) TCGA-FG-A4MY-01 2 47705575 47705575 A G MSH2 Missense_Mutation p.N792S 0.07 tolerated(0.15) benign(0.001) TCGA-FG-A4MY-01 3 10083383 10083383 T G FANCD2 Missense_Mutation p.F258V 0.31 deleterious(0.01) benign(0.005) TCGA-FG-A4MY-01 3 184042736 184042736 G A EIF4G1 Missense_Mutation p.G904E 0.29 deleterious(0) probably_damaging(1) TCGA-FG-A4MY-01 3 50313252 50313252 G T LSMEM2 5'Flank 0.26 TCGA-FG-A4MY-01 4 125590681 125590681 T C ANKRD50 Missense_Mutation p.S1251G 0.24 tolerated(0.43) benign(0.027) TCGA-FG-A4MY-01 4 1836604 1836604 C T LETM1 Missense_Mutation p.A282T 0.12 tolerated(0.11) benign(0.089) TCGA-FG-A4MY-01 5 175913383 175913384 - A FAF2 Frame_Shift_Ins p.E55Rfs*5 0.13 TCGA-FG-A4MY-01 6 151055100 151055100 T C PLEKHG1 Missense_Mutation p.S95P 0.23 tolerated(0.84) benign(0) TCGA-FG-A4MY-01 6 44269151 44269151 C G AARS2 Silent p.L883L 0.06 TCGA-FG-A4MY-01 6 83904244 83904244 A G RWDD2A Missense_Mutation p.N25S 0.32 tolerated(0.26) benign(0.043) TCGA-FG-A4MY-01 9 119144692 119144692 T A PAPPA Missense_Mutation p.Y1566N 0.09 deleterious(0) possibly_damaging(0.788) TCGA-FG-A4MY-01 9 136641200 136641200 C T VAV2 Silent p.P656P 0.28 TCGA-FG-A4MY-01 X 110385328 110385328 T C PAK3 Silent p.N60N 0.24 TCGA-FG-A4MY-01 X 131520820 131520820 A G MBNL3 Missense_Mutation p.L264P 0.31 deleterious(0) possibly_damaging(0.718) TCGA-FG-A4MY-01 X 141291734 141291734 T C MAGEC2 Missense_Mutation p.N14D 0.14 tolerated_low_confidence(0.53) benign(0) TCGA-FG-A4MY-01 X 153247936 153247936 G C TMEM187 Silent p.L141L 0.23 TCGA-FG-A4MY-01 X 32456488 32456488 C T DMD Missense_Mutation p.R1314Q 0.33 benign(0) TCGA-FG-A4MY-01 X 53285222 53285222 G A IQSEC2 Silent p.G253G 0.27 TCGA-FG-A4MY-01 X 70341257 70341257 G T MED12 Missense_Mutation p.L272F 0.09 benign(0.027) TCGA-FG-A4MY-01 X 76874425 76874425 T - ATRX Frame_Shift_Del p.K1766Rfs*16 0.33 TCGA-FG-A60J-01 10 98129891 98129891 G A TLL2 Silent p.Y948Y 0.12 TCGA-FG-A60J-01 11 104897057 104897057 A C CASP1 Missense_Mutation p.D381E 0.09 tolerated(0.54) benign(0) TCGA-FG-A60J-01 11 55703053 55703053 A G OR5I1 Missense_Mutation p.I275T 0.36 deleterious(0.01) benign(0.185) TCGA-FG-A60J-01 11 56949447 56949447 A G LRRC55 Missense_Mutation p.D27G 0.15 tolerated_low_confidence(0.12) benign(0.008) TCGA-FG-A60J-01 11 840267 840267 G A POLR2L 3'UTR 0.09 TCGA-FG-A60J-01 12 10131591 10131591 C T CLEC12A Missense_Mutation p.R50C 0.38 deleterious(0.03) benign(0.247) TCGA-FG-A60J-01 12 119592158 119592158 C T SRRM4 Missense_Mutation p.P501L 0.50 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-FG-A60J-01 13 21562142 21562142 G A LATS2 Missense_Mutation p.R593C 0.14 deleterious(0) probably_damaging(0.998) TCGA-FG-A60J-01 14 50269393 50269393 A C NEMF Silent p.L656L 0.10 TCGA-FG-A60J-01 14 64683079 64683079 T C SYNE2 Missense_Mutation p.S6506P 0.43 probably_damaging(0.936) TCGA-FG-A60J-01 15 78882881 78882881 G A CHRNA5 Missense_Mutation p.G383D 0.36 tolerated(0.24) benign(0.002) TCGA-FG-A60J-01 15 90265288 90265288 T C WDR93 Silent p.D266D 0.06 TCGA-FG-A60J-01 17 13400056 13400056 C T HS3ST3A1 Missense_Mutation p.A227T 0.23 tolerated(0.13) benign(0.11) TCGA-FG-A60J-01 17 15532459 15532459 G A RP11-385D13.1 Nonsense_Mutation p.Q389* 0.11 TCGA-FG-A60J-01 17 7577157 7577157 T G TP53 Splice_Site p.X261_splice 0.46 TCGA-FG-A60J-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.54 deleterious(0) probably_damaging(0.996) TCGA-FG-A60J-01 17 915191 915191 G A ABR Nonsense_Mutation p.Q666* 0.40 TCGA-FG-A60J-01 1 152279179 152279179 G T FLG Nonsense_Mutation p.S2728* 0.17 TCGA-FG-A60J-01 1 162381781 162381781 C T SH2D1B Missense_Mutation p.R9H 0.10 deleterious(0.03) possibly_damaging(0.463) TCGA-FG-A60J-01 1 248366698 248366698 C G OR2M3 Missense_Mutation p.S110C 0.07 tolerated(0.09) benign(0.002) TCGA-FG-A60J-01 22 37603530 37603530 C T SSTR3 Missense_Mutation p.A105T 0.40 tolerated(0.08) possibly_damaging(0.784) TCGA-FG-A60J-01 22 43898541 43898541 C A MPPED1 Missense_Mutation p.P256T 0.10 tolerated(0.55) benign(0.007) TCGA-FG-A60J-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A60J-01 3 127786281 127786281 C T SEC61A1 Silent p.G331G 0.35 TCGA-FG-A60J-01 3 130463923 130463923 T C PIK3R4 Missense_Mutation p.E47G 0.30 deleterious(0) probably_damaging(0.985) TCGA-FG-A60J-01 4 122681459 122681459 T A TMEM155 Missense_Mutation p.K128M 0.35 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-FG-A60J-01 4 40045275 40045275 G A RP11-333E13.4 RNA 0.07 TCGA-FG-A60J-01 4 8603122 8603122 G A CPZ Missense_Mutation p.A132T 0.31 deleterious(0.05) probably_damaging(0.918) TCGA-FG-A60J-01 7 27196035 27196035 C T HOXA7 Missense_Mutation p.A44T 0.14 tolerated(0.26) benign(0.005) TCGA-FG-A60J-01 8 22081799 22081799 C T PHYHIP Missense_Mutation p.R133H 0.05 deleterious(0.03) benign(0.069) TCGA-FG-A60J-01 8 38262000 38262000 G A LETM2 Silent p.P351P 0.14 TCGA-FG-A60J-01 8 56436610 56436610 T C XKR4 Missense_Mutation p.S593P 0.33 tolerated(1) benign(0.255) TCGA-FG-A60J-01 9 18928550 18928550 C T FAM154A Missense_Mutation p.A309T 0.44 tolerated(0.38) benign(0.042) TCGA-FG-A60J-01 X 100077401 100077401 A T CSTF2 Missense_Mutation p.E100V 0.29 deleterious(0) probably_damaging(0.983) TCGA-FG-A60J-01 X 100490939 100490939 G A DRP2 Missense_Mutation p.A70T 0.33 tolerated_low_confidence(0.18) benign(0.01) TCGA-FG-A60J-01 X 105280487 105280487 A C SERPINA7 Missense_Mutation p.L188R 0.34 deleterious(0) probably_damaging(0.999) TCGA-FG-A60J-01 X 117773444 117773444 T A DOCK11 Missense_Mutation p.S1350T 0.14 tolerated(0.06) benign(0.024) TCGA-FG-A60J-01 X 130217833 130217833 C T ARHGAP36 Missense_Mutation p.R149C 0.06 tolerated(0.07) benign(0.009) TCGA-FG-A60J-01 X 135428469 135428469 G C GPR112 Silent p.L868L 0.08 TCGA-FG-A60J-01 X 151336930 151336930 A T GABRA3 Missense_Mutation p.S417T 0.04 tolerated(0.33) benign(0.142) TCGA-FG-A60J-01 X 153195616 153195616 T C NAA10 Missense_Mutation p.N178D 0.46 tolerated(0.07) benign(0.002) TCGA-FG-A60J-01 X 153640435 153640435 A T TAZ Missense_Mutation p.H41L 0.53 tolerated(0.27) benign(0.102) TCGA-FG-A60J-01 X 47774744 47774744 T C ZNF81 Silent p.Y233Y 0.10 TCGA-FG-A60J-01 X 48831681 48831681 C G GRIPAP1 Silent p.L773L 0.38 TCGA-FG-A60J-01 X 66863188 66863188 G C AR Silent p.G569G 0.10 TCGA-FG-A60J-01 X 70321974 70321974 G T FOXO4 3'UTR 0.39 TCGA-FG-A60J-01 X 70776956 70776956 G T OGT Splice_Site p.X440_splice 0.11 TCGA-FG-A60J-01 X 71350423 71350423 C T RGAG4 Missense_Mutation p.R323Q 0.34 tolerated(0.32) benign(0.029) TCGA-FG-A60K-01 11 6912815 6912815 T C OR2D2 Missense_Mutation p.N306S 0.20 tolerated(0.73) benign(0.001) TCGA-FG-A60K-01 12 6424735 6424735 C T PLEKHG6 Missense_Mutation p.L159F 0.21 tolerated(0.52) benign(0.021) TCGA-FG-A60K-01 12 8673735 8673735 T G CLEC4D Missense_Mutation p.N172K 0.43 tolerated(0.21) benign(0.006) TCGA-FG-A60K-01 13 37012005 37012006 - A CCNA1 Frame_Shift_Ins p.N180Kfs*17 0.26 TCGA-FG-A60K-01 15 43102841 43102841 A C TTBK2 Missense_Mutation p.L265V 0.37 deleterious(0.01) possibly_damaging(0.498) TCGA-FG-A60K-01 16 4385109 4385109 G C GLIS2 Missense_Mutation p.D191H 0.38 deleterious(0) probably_damaging(0.997) TCGA-FG-A60K-01 19 11348871 11348871 C T DOCK6 Missense_Mutation p.A585T 0.05 deleterious(0) possibly_damaging(0.734) TCGA-FG-A60K-01 19 42798816 42798817 - GCGG CIC Frame_Shift_Ins p.R1465Afs*50 0.56 TCGA-FG-A60K-01 1 161139471 161139471 C G PPOX Missense_Mutation p.L277V 0.07 tolerated(0.44) benign(0.009) TCGA-FG-A60K-01 1 173930321 173930321 T A RC3H1 Missense_Mutation p.H755L 0.05 tolerated(0.68) probably_damaging(0.996) TCGA-FG-A60K-01 20 49224997 49224997 C T FAM65C Silent p.T291T 0.41 TCGA-FG-A60K-01 21 44592355 44592355 C T CRYAA Missense_Mutation p.R163W 0.45 tolerated(0.14) benign(0.43) TCGA-FG-A60K-01 22 31032741 31032741 A G SLC35E4 Missense_Mutation p.M102V 0.26 tolerated(0.29) benign(0) TCGA-FG-A60K-01 2 136467732 136467732 C G R3HDM1 Missense_Mutation p.N854K 0.15 tolerated(0.45) benign(0.101) TCGA-FG-A60K-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A60K-01 2 28772947 28772947 T C PLB1 Missense_Mutation p.L360P 0.38 tolerated(0.27) benign(0.001) TCGA-FG-A60K-01 6 167040506 167040506 A T RPS6KA2 Intron 0.31 TCGA-FG-A60K-01 6 168430294 168430294 G A KIF25 Missense_Mutation p.R10H 0.29 tolerated_low_confidence(0.25) benign(0.001) TCGA-FG-A60K-01 6 21595267 21595269 GGC - SOX4 In_Frame_Del p.G173del 0.31 TCGA-FG-A60K-01 6 28472057 28472057 C T GPX6 3'UTR 0.37 TCGA-FG-A60K-01 6 30879464 30879464 T C GTF2H4 Missense_Mutation p.Y249H 0.41 deleterious(0) probably_damaging(0.979) TCGA-FG-A60K-01 6 31545282 31545282 G A TNF Missense_Mutation p.G224R 0.39 deleterious(0) probably_damaging(0.967) TCGA-FG-A60K-01 7 48336884 48336884 C A ABCA13 Missense_Mutation p.L3059I 0.16 possibly_damaging(0.878) TCGA-FG-A60K-01 8 27779274 27779274 G A SCARA5 Missense_Mutation p.R244W 0.20 tolerated(0.07) benign(0.01) TCGA-FG-A60K-01 X 70346299 70346299 C G MED12 Missense_Mutation p.L884V 0.23 benign(0.354) TCGA-FG-A60K-01 X 70373319 70373319 G T NLGN3 Intron 0.38 TCGA-FG-A60K-01 X 70463798 70463798 C T ZMYM3 Missense_Mutation p.A1105T 0.46 tolerated(0.09) possibly_damaging(0.521) TCGA-FG-A60K-01 X 80047410 80047410 G A BRWD3 Silent p.L125L 0.13 TCGA-FG-A60L-01 10 75893895 75893895 G A AP3M1 Missense_Mutation p.P158L 0.15 deleterious(0) probably_damaging(0.963) TCGA-FG-A60L-01 12 16517026 16517026 T C MGST1 3'UTR 0.29 TCGA-FG-A60L-01 12 47472572 47472572 T C AMIGO2 Missense_Mutation p.R72G 0.20 tolerated(0.31) probably_damaging(0.975) TCGA-FG-A60L-01 12 52940220 52940220 G A KRT71 Missense_Mutation p.A392V 0.27 tolerated(0.1) benign(0.12) TCGA-FG-A60L-01 14 100615805 100615805 C T DEGS2 Missense_Mutation p.A109T 0.17 deleterious(0) probably_damaging(0.976) TCGA-FG-A60L-01 14 94780585 94780585 T C SERPINA6 Missense_Mutation p.D134G 0.15 tolerated(0.17) possibly_damaging(0.531) TCGA-FG-A60L-01 15 86312002 86312002 C T KLHL25 Missense_Mutation p.G347D 0.07 deleterious(0) probably_damaging(1) TCGA-FG-A60L-01 15 90784327 90784327 C G GDPGP1 Missense_Mutation p.L63V 0.24 deleterious(0.04) benign(0.088) TCGA-FG-A60L-01 16 15219593 15219593 G A RP11-1186N24.5 RNA 0.19 TCGA-FG-A60L-01 16 15813153 15813153 C T MYH11 Missense_Mutation p.A1706T 0.10 probably_damaging(1) TCGA-FG-A60L-01 16 30616551 30616551 G C ZNF689 Missense_Mutation p.C179W 0.19 deleterious(0) probably_damaging(0.989) TCGA-FG-A60L-01 17 10428846 10428846 G C MYH2 Missense_Mutation p.L1487V 0.21 tolerated(0.14) benign(0.074) TCGA-FG-A60L-01 17 3844416 3844416 C T ATP2A3 Missense_Mutation p.G650D 0.05 tolerated(0.08) benign(0.025) TCGA-FG-A60L-01 17 7576926 7576937 GCTAGGAAAGAG - TP53 Splice_Site p.X307_splice 0.47 TCGA-FG-A60L-01 18 47095873 47095873 G A LIPG Missense_Mutation p.G176R 0.24 deleterious(0) probably_damaging(1) TCGA-FG-A60L-01 18 8379324 8379324 G A PTPRM Missense_Mutation p.A1258T 0.39 deleterious(0) probably_damaging(0.999) TCGA-FG-A60L-01 1 150482462 150482462 C A ECM1 Silent p.L123L 0.25 TCGA-FG-A60L-01 1 40929203 40929203 C T ZFP69B Missense_Mutation p.S516L 0.20 deleterious(0) probably_damaging(0.966) TCGA-FG-A60L-01 20 16359697 16359697 C A KIF16B Nonsense_Mutation p.E984* 0.34 TCGA-FG-A60L-01 20 3766523 3766524 - T CENPB Frame_Shift_Ins p.F203Yfs*184 0.27 TCGA-FG-A60L-01 20 44803600 44803600 G A CDH22 Nonsense_Mutation p.Q678* 0.25 TCGA-FG-A60L-01 21 43274913 43274913 G A PRDM15 Silent p.D466D 0.23 TCGA-FG-A60L-01 22 51041583 51041583 C T MAPK8IP2 Intron 0.34 TCGA-FG-A60L-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A60L-01 2 220413871 220413871 C T TMEM198 Intron 0.25 TCGA-FG-A60L-01 3 14965518 14965518 G A FGD5 Missense_Mutation p.R1314Q 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-FG-A60L-01 4 15938242 15938242 C T FGFBP1 Missense_Mutation p.S5N 0.38 tolerated(0.34) benign(0.213) TCGA-FG-A60L-01 5 140626622 140626622 G A PCDHB15 Silent p.P492P 0.27 TCGA-FG-A60L-01 6 169648831 169648831 C T THBS2 Missense_Mutation p.R97K 0.20 deleterious(0.03) benign(0.033) TCGA-FG-A60L-01 6 43403589 43403589 G A ABCC10 Missense_Mutation p.R570Q 0.22 deleterious(0) probably_damaging(0.961) TCGA-FG-A60L-01 6 45515099 45515099 T C RUNX2 3'UTR 0.32 TCGA-FG-A60L-01 9 38016073 38016073 C G SHB Missense_Mutation p.S258T 0.22 tolerated(0.69) benign(0) TCGA-FG-A6IZ-01 10 104122359 104122361 AGA - GBF1 In_Frame_Del p.K606del 0.14 TCGA-FG-A6IZ-01 10 71899723 71899723 C T TYSND1 Missense_Mutation p.R553Q 0.06 deleterious(0.03) possibly_damaging(0.725) TCGA-FG-A6IZ-01 11 107948957 107948957 A G CUL5 Missense_Mutation p.K390E 0.20 tolerated(0.08) possibly_damaging(0.696) TCGA-FG-A6IZ-01 11 119103190 119103190 G A CBL Silent p.A76A 0.10 TCGA-FG-A6IZ-01 11 1643289 1643289 G A KRTAP5-4 Missense_Mutation p.S12F 0.09 deleterious_low_confidence(0) unknown(0) TCGA-FG-A6IZ-01 11 18636782 18636782 G A SPTY2D1 Missense_Mutation p.H347Y 0.11 tolerated(0.23) benign(0.152) TCGA-FG-A6IZ-01 11 4510367 4510367 G A OR52K1 Silent p.T79T 0.06 TCGA-FG-A6IZ-01 11 57798864 57798864 G A OR6Q1 Missense_Mutation p.R147H 0.04 tolerated(0.53) benign(0.01) TCGA-FG-A6IZ-01 11 6977625 6977625 C T ZNF215 Missense_Mutation p.R473W 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-FG-A6IZ-01 12 32861134 32861135 AG - DNM1L Frame_Shift_Del p.E116Kfs*6 0.31 TCGA-FG-A6IZ-01 12 43944870 43944870 A G ADAMTS20 Missense_Mutation p.F99L 0.17 deleterious(0) probably_damaging(0.999) TCGA-FG-A6IZ-01 12 46285864 46285864 A T ARID2 Missense_Mutation p.Q1711L 0.12 tolerated(0.13) benign(0.159) TCGA-FG-A6IZ-01 13 103282539 103282539 G A TPP2 Missense_Mutation p.G413E 0.23 deleterious(0.01) probably_damaging(1) TCGA-FG-A6IZ-01 13 24823639 24823639 C T SPATA13 Nonsense_Mutation p.R560* 0.89 TCGA-FG-A6IZ-01 13 36888512 36888512 A G SPG20 Silent p.T445T 0.28 TCGA-FG-A6IZ-01 14 92083964 92083964 C T CATSPERB Missense_Mutation p.A793T 0.07 tolerated(0.06) benign(0.009) TCGA-FG-A6IZ-01 15 34528987 34528987 G A SLC12A6 Silent p.Y988Y 0.41 TCGA-FG-A6IZ-01 16 21655635 21655635 G A IGSF6 Silent p.C170C 0.04 TCGA-FG-A6IZ-01 16 2278405 2278405 C G E4F1 Missense_Mutation p.Q64E 0.47 deleterious(0.01) benign(0.393) TCGA-FG-A6IZ-01 16 24883542 24883542 T G SLC5A11 Splice_Site p.X124_splice 0.04 TCGA-FG-A6IZ-01 16 30106634 30106634 C T YPEL3 Missense_Mutation p.R57Q 0.44 deleterious(0) probably_damaging(0.984) TCGA-FG-A6IZ-01 17 17723758 17723758 C T SREBF1 Missense_Mutation p.G87R 0.13 tolerated(0.18) possibly_damaging(0.807) TCGA-FG-A6IZ-01 17 19316068 19316068 C T RNF112 Missense_Mutation p.P118L 0.05 tolerated(0.11) benign(0.011) TCGA-FG-A6IZ-01 17 33738466 33738466 G T SLFN12 Missense_Mutation p.S543Y 0.42 deleterious(0) possibly_damaging(0.608) TCGA-FG-A6IZ-01 17 46925765 46925765 C G CALCOCO2 Missense_Mutation p.P146R 0.05 deleterious(0) probably_damaging(0.999) TCGA-FG-A6IZ-01 17 66267106 66267106 T C SLC16A6 Missense_Mutation p.I399V 0.21 tolerated(1) benign(0.002) TCGA-FG-A6IZ-01 18 23854626 23854626 G A TAF4B Splice_Site p.X200_splice 0.12 TCGA-FG-A6IZ-01 19 18260436 18260436 C T MAST3 Missense_Mutation p.P1277L 0.08 tolerated_low_confidence(0.69) benign(0.203) TCGA-FG-A6IZ-01 19 42799051 42799051 G T CIC Missense_Mutation p.R1512L 0.90 probably_damaging(0.931) TCGA-FG-A6IZ-01 19 5456174 5456174 C T ZNRF4 Silent p.V224V 0.07 TCGA-FG-A6IZ-01 1 12785441 12785441 G A AADACL3 Silent p.S177S 0.24 TCGA-FG-A6IZ-01 1 147400568 147400568 C G GPR89B 5'UTR 0.13 TCGA-FG-A6IZ-01 1 173526563 173526563 C T SLC9C2 Nonsense_Mutation p.W377* 0.44 TCGA-FG-A6IZ-01 1 176525560 176525560 G A PAPPA2 Silent p.L34L 0.27 TCGA-FG-A6IZ-01 1 44364853 44364853 C T ST3GAL3 Missense_Mutation p.R228C 0.89 deleterious(0) probably_damaging(0.977) TCGA-FG-A6IZ-01 1 78444566 78444567 - A FUBP1 Intron 0.52 TCGA-FG-A6IZ-01 20 10620233 10620233 C T JAG1 Silent p.P1190P 0.05 TCGA-FG-A6IZ-01 20 1905410 1905410 A G SIRPA Missense_Mutation p.E363G 0.06 tolerated(0.52) benign(0.001) TCGA-FG-A6IZ-01 20 2591146 2591146 C T TMC2 Missense_Mutation p.R499C 0.08 deleterious(0) probably_damaging(0.995) TCGA-FG-A6IZ-01 21 45876948 45876948 C T LRRC3 Missense_Mutation p.R141C 0.10 deleterious(0.01) probably_damaging(0.962) TCGA-FG-A6IZ-01 21 46925298 46925306 CCCCCTGGG - COL18A1 In_Frame_Del p.P1200_G1202del 0.21 TCGA-FG-A6IZ-01 2 136467655 136467655 G A R3HDM1 Missense_Mutation p.G829R 0.42 deleterious(0.01) probably_damaging(1) TCGA-FG-A6IZ-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A6IZ-01 2 26435460 26435460 G A HADHA Silent p.A318A 0.04 TCGA-FG-A6IZ-01 2 31571808 31571808 G A XDH Missense_Mutation p.P1003L 0.06 deleterious(0) probably_damaging(0.999) TCGA-FG-A6IZ-01 2 64796313 64796313 G A AFTPH Silent p.K725K 0.08 TCGA-FG-A6IZ-01 2 73519641 73519641 A G EGR4 Silent p.D238D 0.20 TCGA-FG-A6IZ-01 3 100581201 100581201 A G ABI3BP Silent p.P371P 0.15 TCGA-FG-A6IZ-01 3 119187888 119187888 C G POGLUT1 Missense_Mutation p.S7W 0.41 tolerated_low_confidence(0.1) benign(0.048) TCGA-FG-A6IZ-01 3 138724681 138724681 C - PRR23A Frame_Shift_Del p.A144Hfs*188 0.34 TCGA-FG-A6IZ-01 3 1427358 1427358 G A CNTN6 Missense_Mutation p.V861I 0.11 tolerated(0.45) benign(0.029) TCGA-FG-A6IZ-01 3 151475327 151475327 G A AADACL2 Missense_Mutation p.R384H 0.47 tolerated(0.33) benign(0.001) TCGA-FG-A6IZ-01 3 154056037 154056037 A G GPR149 Silent p.I549I 0.21 TCGA-FG-A6IZ-01 3 183495362 183495362 G A YEATS2 Silent p.Q870Q 0.12 TCGA-FG-A6IZ-01 3 32932723 32932723 G A TRIM71 Missense_Mutation p.R676H 0.09 deleterious(0) probably_damaging(0.998) TCGA-FG-A6IZ-01 3 56771305 56771305 G A ARHGEF3 Missense_Mutation p.L349F 0.15 deleterious(0.04) probably_damaging(1) TCGA-FG-A6IZ-01 3 74347288 74347288 G A CNTN3 Missense_Mutation p.R741C 0.14 deleterious(0) probably_damaging(1) TCGA-FG-A6IZ-01 4 26322636 26322636 G A RBPJ Intron 0.12 TCGA-FG-A6IZ-01 4 65274899 65274899 C T TECRL Silent p.T57T 0.51 TCGA-FG-A6IZ-01 5 145719841 145719841 C T POU4F3 Missense_Mutation p.P284L 0.11 deleterious(0) benign(0.318) TCGA-FG-A6IZ-01 6 159456923 159456923 C T TAGAP Missense_Mutation p.R711Q 0.08 tolerated(0.18) benign(0.037) TCGA-FG-A6IZ-01 6 21595117 21595117 A G SOX4 Missense_Mutation p.K118E 0.25 deleterious(0) probably_damaging(0.982) TCGA-FG-A6IZ-01 6 36653546 36653546 G A CDKN1A Missense_Mutation p.R155H 0.12 deleterious(0) probably_damaging(0.998) TCGA-FG-A6IZ-01 6 38773314 38773314 A G DNAH8 Missense_Mutation p.Y814C 0.05 benign(0.213) TCGA-FG-A6IZ-01 6 70993483 70993483 C T COL9A1 Missense_Mutation p.R246Q 0.18 unknown(0) TCGA-FG-A6IZ-01 6 75893744 75893744 T C COL12A1 Missense_Mutation p.T372A 0.07 benign(0.002) TCGA-FG-A6IZ-01 7 157000121 157000121 C T UBE3C Missense_Mutation p.S483F 0.40 deleterious(0) probably_damaging(0.977) TCGA-FG-A6IZ-01 7 66104145 66104145 G A KCTD7 Missense_Mutation p.V266M 0.07 tolerated(0.07) possibly_damaging(0.804) TCGA-FG-A6IZ-01 7 80108203 80108203 A G GNAT3 Missense_Mutation p.C139R 0.37 deleterious(0) probably_damaging(0.95) TCGA-FG-A6IZ-01 8 42147675 42147675 C T IKBKB Silent p.L68L 0.51 TCGA-FG-A6IZ-01 9 100437687 100437687 A C XPA 3'UTR 0.25 TCGA-FG-A6IZ-01 9 14842610 14842610 A G FREM1 Missense_Mutation p.V481A 0.93 deleterious(0) possibly_damaging(0.633) TCGA-FG-A6IZ-01 X 111914413 111914413 C T LHFPL1 Missense_Mutation p.R69H 0.05 deleterious(0.04) possibly_damaging(0.771) TCGA-FG-A6IZ-01 X 205505 205505 G A PLCXD1 Missense_Mutation p.R78H 0.05 tolerated(0.23) benign(0.262) TCGA-FG-A6IZ-01 X 49093692 49093692 C T CCDC22 Missense_Mutation p.R64W 0.40 deleterious(0) probably_damaging(0.999) TCGA-FG-A6IZ-01 X 53966856 53966856 G C PHF8 Missense_Mutation p.L951V 0.12 tolerated_low_confidence(0.41) benign(0) TCGA-FG-A6J1-01 10 131639180 131639180 C T EBF3 Missense_Mutation p.A488T 0.06 tolerated_low_confidence(0.26) benign(0.035) TCGA-FG-A6J1-01 11 49175969 49175969 C A FOLH1 Missense_Mutation p.D567Y 0.37 deleterious(0) probably_damaging(1) TCGA-FG-A6J1-01 11 55111417 55111417 C T OR4A16 Silent p.L247L 0.37 TCGA-FG-A6J1-01 12 122845629 122845629 G A CLIP1 Silent p.N294N 0.13 TCGA-FG-A6J1-01 14 66083061 66083061 A G FUT8 Missense_Mutation p.E151G 0.04 tolerated(0.24) benign(0.069) TCGA-FG-A6J1-01 15 45442843 45442843 T C DUOX1 Silent p.P944P 0.06 TCGA-FG-A6J1-01 16 31422117 31422117 G A ITGAD Missense_Mutation p.R425H 0.05 deleterious(0.02) probably_damaging(0.993) TCGA-FG-A6J1-01 16 70694126 70694126 G C IL34 3'UTR 0.24 TCGA-FG-A6J1-01 17 2966516 2966516 G A OR1D5 Missense_Mutation p.P129L 0.15 deleterious(0) benign(0.424) TCGA-FG-A6J1-01 17 35549066 35549066 G A ACACA Missense_Mutation p.R1461C 0.51 deleterious(0) probably_damaging(0.999) TCGA-FG-A6J1-01 17 38906790 38906790 C T KRT25 Silent p.A339A 0.09 TCGA-FG-A6J1-01 17 41352482 41352482 A G NBR1 Silent p.E775E 0.53 TCGA-FG-A6J1-01 18 71740936 71740936 C T FBXO15 Silent p.L431L 0.10 TCGA-FG-A6J1-01 19 19260143 19260143 G A MEF2B Silent p.S50S 0.38 TCGA-FG-A6J1-01 19 42796882 42796883 - C CIC Frame_Shift_Ins p.S1117Kfs*34 0.55 TCGA-FG-A6J1-01 19 8038658 8038658 A G ELAVL1 Silent p.S127S 0.15 TCGA-FG-A6J1-01 1 10386358 10386358 C G KIF1B Silent p.L909L 0.79 TCGA-FG-A6J1-01 1 171605167 171605167 A T MYOC Nonsense_Mutation p.Y471* 0.19 TCGA-FG-A6J1-01 1 198725315 198725315 A G PTPRC 3'UTR 0.50 TCGA-FG-A6J1-01 1 237863644 237863644 C T RYR2 Missense_Mutation p.H3082Y 0.67 possibly_damaging(0.579) TCGA-FG-A6J1-01 22 26423239 26423239 C T MYO18B Silent p.Y2433Y 0.30 TCGA-FG-A6J1-01 22 31328609 31328609 T C MORC2 Silent p.E828E 0.22 TCGA-FG-A6J1-01 2 204001498 204001498 G A NBEAL1 Splice_Site p.X1493_splice 0.05 TCGA-FG-A6J1-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A6J1-01 2 97513875 97513875 C T ANKRD39 3'UTR 0.50 TCGA-FG-A6J1-01 3 105452941 105452941 A G CBLB Missense_Mutation p.L372P 0.28 deleterious(0.01) probably_damaging(1) TCGA-FG-A6J1-01 3 114069124 114069124 T C ZBTB20 Missense_Mutation p.T601A 0.10 deleterious(0.02) probably_damaging(0.973) TCGA-FG-A6J1-01 3 142720480 142720480 A G U2SURP Missense_Mutation p.K4E 0.39 tolerated_low_confidence(0.16) benign(0.162) TCGA-FG-A6J1-01 3 161221128 161221128 G A OTOL1 Missense_Mutation p.G278S 0.16 deleterious(0) unknown(0) TCGA-FG-A6J1-01 3 42956752 42956752 C T ZNF662 Missense_Mutation p.A422V 0.08 deleterious(0) possibly_damaging(0.723) TCGA-FG-A6J1-01 4 55141093 55141093 T C PDGFRA Missense_Mutation p.L580P 0.06 deleterious(0) probably_damaging(0.983) TCGA-FG-A6J1-01 7 135272653 135272653 A G NUP205 Silent p.E462E 0.05 TCGA-FG-A6J1-01 7 24747789 24747789 G A DFNA5 Missense_Mutation p.A316V 0.07 tolerated(0.22) benign(0.011) TCGA-FG-A6J1-01 7 44924342 44924342 G A PURB Silent p.G202G 0.17 TCGA-FG-A6J1-01 7 76141108 76141108 G A UPK3B Missense_Mutation p.G179R 0.38 tolerated_low_confidence(0.26) benign(0.109) TCGA-FG-A6J1-01 7 98547852 98547852 C T TRRAP Silent p.N1760N 0.42 TCGA-FG-A6J1-01 X 47107222 47107222 C T USP11 Missense_Mutation p.R929C 0.34 deleterious(0) probably_damaging(1) TCGA-FG-A6J1-01 X 84614572 84614572 C A POF1B Missense_Mutation p.V141L 0.38 tolerated_low_confidence(0.22) benign(0.325) TCGA-FG-A6J3-01 10 123848117 123848117 G T TACC2 Intron 0.33 TCGA-FG-A6J3-01 10 127434378 127434378 A G EDRF1 Missense_Mutation p.N898S 0.14 deleterious(0) probably_damaging(0.999) TCGA-FG-A6J3-01 10 24508622 24508622 C T KIAA1217 Silent p.R46R 0.23 TCGA-FG-A6J3-01 10 37508105 37508105 A T ANKRD30A Missense_Mutation p.E1099D 0.17 deleterious(0.02) benign(0.032) TCGA-FG-A6J3-01 10 37508389 37508389 A G ANKRD30A Missense_Mutation p.H1194R 0.19 tolerated(0.16) possibly_damaging(0.507) TCGA-FG-A6J3-01 10 50950920 50950920 T C OGDHL Missense_Mutation p.I656V 0.12 tolerated(0.38) benign(0.008) TCGA-FG-A6J3-01 10 51465017 51465017 G A AGAP7 Missense_Mutation p.S480L 0.23 deleterious(0.01) probably_damaging(0.925) TCGA-FG-A6J3-01 10 96018841 96018841 G A PLCE1 Missense_Mutation p.E1250K 0.20 deleterious(0.02) benign(0.296) TCGA-FG-A6J3-01 11 1081657 1081657 G A MUC2 Missense_Mutation p.G529R 0.14 probably_damaging(1) TCGA-FG-A6J3-01 11 51412112 51412112 C A OR4A5 Missense_Mutation p.C95F 0.18 deleterious_low_confidence(0) benign(0.216) TCGA-FG-A6J3-01 11 5364717 5364717 G A OR51B5 Missense_Mutation p.T13I 0.20 deleterious(0.03) benign(0.196) TCGA-FG-A6J3-01 11 57563185 57563185 G A CTNND1 Missense_Mutation p.R135Q 0.22 deleterious(0.02) probably_damaging(0.913) TCGA-FG-A6J3-01 11 63487398 63487398 A G RTN3 Missense_Mutation p.D475G 0.34 tolerated(0.71) benign(0.009) TCGA-FG-A6J3-01 11 7111318 7111318 C T RBMXL2 Missense_Mutation p.R323C 0.08 deleterious(0.01) benign(0.01) TCGA-FG-A6J3-01 12 4543495 4543495 G A FGF6 Silent p.Y171Y 0.07 TCGA-FG-A6J3-01 12 9243855 9243855 C G A2M Missense_Mutation p.R804P 0.38 deleterious(0) probably_damaging(0.997) TCGA-FG-A6J3-01 13 75884224 75884224 G A TBC1D4 Missense_Mutation p.P816L 0.41 deleterious(0.04) benign(0.36) TCGA-FG-A6J3-01 14 106641596 106641597 - C IGHV1-18 Frame_Shift_Ins p.S107Ifs*2 0.21 TCGA-FG-A6J3-01 14 106641630 106641630 G A IGHV1-18 Missense_Mutation p.T95M 0.35 tolerated(0.16) benign(0.085) TCGA-FG-A6J3-01 15 101528904 101528904 G A LRRK1 Missense_Mutation p.G167R 0.25 tolerated(0.15) benign(0.189) TCGA-FG-A6J3-01 15 33955020 33955020 G A RYR3 Silent p.E1763E 0.26 TCGA-FG-A6J3-01 16 21218255 21218255 G A ZP2 Silent p.H129H 0.38 TCGA-FG-A6J3-01 16 23768869 23768869 G T CHP2 Missense_Mutation p.V186F 0.17 deleterious(0.05) possibly_damaging(0.463) TCGA-FG-A6J3-01 16 3139706 3139706 G C ZSCAN10 Missense_Mutation p.P522A 0.25 deleterious(0) probably_damaging(0.999) TCGA-FG-A6J3-01 16 3139731 3139731 G C ZSCAN10 Missense_Mutation p.H513Q 0.15 deleterious(0) probably_damaging(1) TCGA-FG-A6J3-01 16 47001550 47001550 C T DNAJA2 Missense_Mutation p.G151E 0.22 deleterious(0) possibly_damaging(0.883) TCGA-FG-A6J3-01 16 84270341 84270341 C T KCNG4 Missense_Mutation p.D251N 0.17 tolerated(0.22) benign(0.31) TCGA-FG-A6J3-01 17 1303433 1303433 C T YWHAE 5'UTR 0.90 TCGA-FG-A6J3-01 17 1715303 1715303 C A SMYD4 Nonsense_Mutation p.E81* 0.17 TCGA-FG-A6J3-01 17 35454875 35454875 T A ACACA Nonsense_Mutation p.K2204* 0.15 TCGA-FG-A6J3-01 17 39643881 39643881 C T KRT36 Missense_Mutation p.E270K 0.23 deleterious(0) probably_damaging(0.996) TCGA-FG-A6J3-01 17 40369407 40369407 G A STAT5B Silent p.H415H 0.20 TCGA-FG-A6J3-01 17 641276 641276 C T FAM57A Missense_Mutation p.P133S 0.06 deleterious(0) probably_damaging(0.94) TCGA-FG-A6J3-01 17 7577558 7577566 GGAACTGTT - TP53 In_Frame_Del p.N239_S241del 0.76 TCGA-FG-A6J3-01 18 29054364 29054364 T C DSG3 Silent p.S794S 0.52 TCGA-FG-A6J3-01 18 61309104 61309104 C T SERPINB4 Missense_Mutation p.V81I 0.06 tolerated(0.47) possibly_damaging(0.449) TCGA-FG-A6J3-01 18 61654342 61654342 G A SERPINB8 Missense_Mutation p.V319M 0.17 deleterious(0.01) possibly_damaging(0.802) TCGA-FG-A6J3-01 19 16594777 16594777 C T CALR3 Silent p.S214S 0.20 TCGA-FG-A6J3-01 19 18963850 18963850 G A UPF1 Missense_Mutation p.A343T 0.14 deleterious(0.01) possibly_damaging(0.653) TCGA-FG-A6J3-01 19 24270074 24270074 G A ZNF254 5'UTR 0.25 TCGA-FG-A6J3-01 19 36259310 36259310 G T C19orf55 3'UTR 0.11 TCGA-FG-A6J3-01 19 49102472 49102472 G T SULT2B1 Missense_Mutation p.G303W 0.31 deleterious(0) probably_damaging(0.999) TCGA-FG-A6J3-01 19 55699488 55699488 C A PTPRH Missense_Mutation p.K811N 0.09 benign(0.368) TCGA-FG-A6J3-01 1 12837337 12837337 C A PRAMEF12 Silent p.T349T 0.09 TCGA-FG-A6J3-01 1 157516958 157516958 G A FCRL5 Nonsense_Mutation p.Q28* 0.23 TCGA-FG-A6J3-01 1 16060354 16060354 G A PLEKHM2 Silent p.L995L 0.42 TCGA-FG-A6J3-01 1 183192355 183192355 T A LAMC2 Silent p.S283S 0.05 TCGA-FG-A6J3-01 1 197029657 197029657 G A F13B Missense_Mutation p.S215F 0.31 tolerated(0.14) benign(0.128) TCGA-FG-A6J3-01 1 202097469 202097469 A G GPR37L1 Missense_Mutation p.I411V 0.43 tolerated(1) benign(0.006) TCGA-FG-A6J3-01 1 24175224 24175224 C A FUCA1 Missense_Mutation p.G359W 0.06 deleterious(0) possibly_damaging(0.62) TCGA-FG-A6J3-01 1 62329953 62329953 A G INADL Missense_Mutation p.E828G 0.09 deleterious(0) possibly_damaging(0.721) TCGA-FG-A6J3-01 1 78163125 78163125 C A USP33 Missense_Mutation p.W902C 0.05 deleterious(0) probably_damaging(1) TCGA-FG-A6J3-01 20 60736516 60736516 G A SS18L1 Missense_Mutation p.G86S 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.751) TCGA-FG-A6J3-01 21 46047995 46047995 C A KRTAP10-9 3'UTR 0.06 TCGA-FG-A6J3-01 22 24313560 24313560 T C DDTL Silent p.L124L 0.18 TCGA-FG-A6J3-01 22 36681964 36681964 G A MYH9 Silent p.A1699A 0.33 TCGA-FG-A6J3-01 22 42608734 42608734 G A TCF20 Missense_Mutation p.L860F 0.19 probably_damaging(0.938) TCGA-FG-A6J3-01 22 50217457 50217457 T C BRD1 Missense_Mutation p.N170S 0.41 deleterious(0) probably_damaging(0.999) TCGA-FG-A6J3-01 2 112536312 112536312 G C ANAPC1 Silent p.L1775L 0.13 TCGA-FG-A6J3-01 2 170068686 170068686 G T LRP2 Missense_Mutation p.N2024K 0.06 benign(0.354) TCGA-FG-A6J3-01 2 179639178 179639178 T A TTN Missense_Mutation p.K2271N 0.17 TCGA-FG-A6J3-01 2 204013825 204013825 G C NBEAL1 Missense_Mutation p.A1777P 0.19 deleterious(0) possibly_damaging(0.628) TCGA-FG-A6J3-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A6J3-01 2 26798818 26798818 C T C2orf70 Silent p.Y41Y 0.23 TCGA-FG-A6J3-01 3 119462954 119462954 C T MAATS1 Missense_Mutation p.R605C 0.14 deleterious(0) probably_damaging(0.999) TCGA-FG-A6J3-01 3 138290122 138290122 C T CEP70 Missense_Mutation p.R49K 0.23 tolerated(0.83) benign(0.009) TCGA-FG-A6J3-01 3 14177320 14177320 C T TMEM43 Missense_Mutation p.A265V 0.04 deleterious(0) probably_damaging(0.96) TCGA-FG-A6J3-01 3 47143009 47143009 T G SETD2 Missense_Mutation p.T1652P 0.23 deleterious(0) possibly_damaging(0.807) TCGA-FG-A6J3-01 3 49756901 49756901 C T AMIGO3 5'UTR 0.06 TCGA-FG-A6J3-01 4 119948345 119948345 G T SYNPO2 Missense_Mutation p.S274I 0.27 tolerated(0.44) benign(0.091) TCGA-FG-A6J3-01 4 159138562 159138562 G A TMEM144 Missense_Mutation p.A108T 0.08 tolerated(0.09) benign(0.309) TCGA-FG-A6J3-01 4 83821890 83821890 A G THAP9 5'Flank 0.28 TCGA-FG-A6J3-01 5 112406798 112406798 G C MCC Missense_Mutation p.Q640E 0.34 tolerated(0.58) possibly_damaging(0.878) TCGA-FG-A6J3-01 5 112868625 112868625 G A YTHDC2 Missense_Mutation p.R242H 0.12 deleterious(0) possibly_damaging(0.89) TCGA-FG-A6J3-01 5 150714964 150714964 A G SLC36A2 Silent p.L224L 0.36 TCGA-FG-A6J3-01 5 176938907 176938907 C T DDX41 Missense_Mutation p.C585Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-FG-A6J3-01 5 35871310 35871310 T C IL7R Missense_Mutation p.W178R 0.44 deleterious(0) probably_damaging(0.993) TCGA-FG-A6J3-01 6 109787072 109787072 A T ZBTB24 Silent p.L692L 0.47 TCGA-FG-A6J3-01 6 32410365 32410365 C T HLA-DRA Nonsense_Mutation p.R75* 0.14 TCGA-FG-A6J3-01 6 33625772 33625772 G A ITPR3 Missense_Mutation p.V116M 0.16 deleterious(0) probably_damaging(0.991) TCGA-FG-A6J3-01 6 54191661 54191661 C T TINAG Missense_Mutation p.R191C 0.21 deleterious(0) probably_damaging(0.91) TCGA-FG-A6J3-01 6 56006596 56006596 C T COL21A1 Missense_Mutation p.R510Q 0.56 tolerated(0.51) benign(0.147) TCGA-FG-A6J3-01 7 66304534 66304534 C G GTF2IRD1P1 RNA 0.15 TCGA-FG-A6J3-01 8 110498956 110498956 A T PKHD1L1 Missense_Mutation p.K3262N 0.08 deleterious(0.02) benign(0.033) TCGA-FG-A6J3-01 8 133198389 133198389 C A KCNQ3 Silent p.L142L 0.15 TCGA-FG-A6J3-01 8 15998346 15998346 C A MSR1 Intron 0.21 TCGA-FG-A6J3-01 8 38934858 38934858 G A ADAM9 Silent p.V603V 0.20 TCGA-FG-A6J3-01 9 138710933 138710933 C G CAMSAP1 Missense_Mutation p.Q1294H 0.30 deleterious(0) probably_damaging(0.973) TCGA-FG-A6J3-01 9 732690 732690 C T KANK1 Intron 0.25 TCGA-FG-A6J3-01 9 90535202 90535202 G T SPATA31C1 RNA 0.13 TCGA-FG-A6J3-01 9 96859752 96859752 C T PTPDC1 Missense_Mutation p.R300C 0.15 deleterious(0) possibly_damaging(0.888) TCGA-FG-A6J3-01 X 129274525 129274525 T A AIFM1 Missense_Mutation p.K255M 0.14 deleterious(0) probably_damaging(0.975) TCGA-FG-A6J3-01 X 130220045 130220045 C A ARHGAP36 Missense_Mutation p.N421K 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-FG-A6J3-01 X 17739569 17739569 C A NHS Silent p.P287P 0.11 TCGA-FG-A6J3-01 X 48164248 48164248 C A SSX9 RNA 0.03 TCGA-FG-A6J3-01 X 63444340 63444340 G A ASB12 Missense_Mutation p.R278W 0.43 deleterious(0) probably_damaging(0.991) TCGA-FG-A6J3-01 X 67273590 67273590 G T OPHN1 Missense_Mutation p.P741T 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FG-A6J3-01 X 72667535 72667535 C A CDX4 Missense_Mutation p.P149H 0.12 tolerated(0.05) possibly_damaging(0.833) TCGA-FG-A6J3-01 X 96173534 96173534 C A DIAPH2 Missense_Mutation p.T299K 0.15 deleterious(0) unknown(0) TCGA-FG-A70Y-01 10 105362427 105362427 C T SH3PXD2A Missense_Mutation p.A822T 0.33 tolerated(0.56) possibly_damaging(0.715) TCGA-FG-A70Y-01 11 408721 408721 G A SIGIRR Silent p.G60G 0.39 TCGA-FG-A70Y-01 13 32526951 32526951 G A EEF1DP3 RNA 0.27 TCGA-FG-A70Y-01 14 100789764 100789764 G A SLC25A47 Missense_Mutation p.A5T 0.41 deleterious(0) probably_damaging(1) TCGA-FG-A70Y-01 14 20019963 20019963 G A POTEM Silent p.H86H 0.06 TCGA-FG-A70Y-01 17 51900741 51900741 T G KIF2B Missense_Mutation p.V116G 0.30 tolerated(0.37) benign(0.118) TCGA-FG-A70Y-01 17 7577127 7577132 CAAAGC - TP53 In_Frame_Del p.S269_E271delinsK 0.38 TCGA-FG-A70Y-01 19 49513785 49513785 G A RUVBL2 Missense_Mutation p.R235H 0.05 deleterious(0) probably_damaging(0.994) TCGA-FG-A70Y-01 19 50918151 50918151 G A POLD1 Missense_Mutation p.R823H 0.08 deleterious(0.01) possibly_damaging(0.532) TCGA-FG-A70Y-01 1 158436010 158436010 G A OR10K1 Missense_Mutation p.R220H 0.12 tolerated(0.51) benign(0.004) TCGA-FG-A70Y-01 1 40137623 40137623 C T NT5C1A Missense_Mutation p.A30T 0.16 tolerated_low_confidence(0.1) benign(0.269) TCGA-FG-A70Y-01 1 91978676 91978676 A C CDC7 Missense_Mutation p.K212Q 0.07 deleterious(0) probably_damaging(0.973) TCGA-FG-A70Y-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A70Y-01 3 123375992 123375992 C T MYLK Silent p.T1423T 0.27 TCGA-FG-A70Y-01 3 38892224 38892224 C T SCN11A Missense_Mutation p.V1359M 0.25 deleterious(0.04) benign(0.26) TCGA-FG-A70Y-01 4 10027566 10027566 C T SLC2A9 5'Flank 0.22 TCGA-FG-A70Y-01 4 16215462 16215462 T G TAPT1 Missense_Mutation p.N87H 0.12 deleterious(0) probably_damaging(0.969) TCGA-FG-A70Y-01 5 159437647 159437647 A G TTC1 Missense_Mutation p.N38D 0.12 tolerated_low_confidence(1) benign(0) TCGA-FG-A70Y-01 5 40852495 40852495 G A CARD6 Missense_Mutation p.S354N 0.37 tolerated(0.31) benign(0.005) TCGA-FG-A70Y-01 7 113518984 113518984 A G PPP1R3A Silent p.I721I 0.31 TCGA-FG-A70Y-01 9 90534111 90534111 G T SPATA31C1 Intron 0.38 TCGA-FG-A70Y-01 X 115304314 115304314 G C AGTR2 Missense_Mutation p.V261L 0.33 deleterious(0.02) possibly_damaging(0.765) TCGA-FG-A70Y-01 X 135313000 135313000 A G MAP7D3 Silent p.T513T 0.21 TCGA-FG-A70Y-01 X 76909629 76909629 G A ATRX Nonsense_Mutation p.R1426* 0.34 TCGA-FG-A70Z-01 10 108357142 108357142 G A SORCS1 Nonsense_Mutation p.R1078* 0.25 TCGA-FG-A70Z-01 10 93185044 93185044 G C HECTD2 Missense_Mutation p.D49H 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.778) TCGA-FG-A70Z-01 11 116691769 116691769 G A APOA4 Silent p.D335D 0.36 TCGA-FG-A70Z-01 11 124120628 124120628 T G OR8G1 Missense_Mutation p.I69S 0.26 deleterious_low_confidence(0.02) benign(0.251) TCGA-FG-A70Z-01 11 1267410 1267410 G A MUC5B Silent p.P3100P 0.28 TCGA-FG-A70Z-01 11 44286677 44286677 G A ALX4 Silent p.C321C 0.32 TCGA-FG-A70Z-01 11 47469404 47469404 C T RAPSN Missense_Mutation p.R164H 0.27 tolerated(0.09) possibly_damaging(0.88) TCGA-FG-A70Z-01 11 75113439 75113439 C G RPS3 Missense_Mutation p.A116G 0.31 deleterious(0.01) benign(0.389) TCGA-FG-A70Z-01 12 29904597 29904597 A C TMTC1 Splice_Site p.X313_splice 0.25 TCGA-FG-A70Z-01 12 43884232 43884232 G A ADAMTS20 Silent p.D361D 0.22 TCGA-FG-A70Z-01 12 51717863 51717863 G A BIN2 Silent p.G8G 0.27 TCGA-FG-A70Z-01 12 57894183 57894183 C T MARS Missense_Mutation p.H391Y 0.06 deleterious(0.05) benign(0.005) TCGA-FG-A70Z-01 12 62777762 62777762 G A USP15 Missense_Mutation p.D411N 0.05 tolerated(0.92) benign(0.029) TCGA-FG-A70Z-01 12 62778055 62778055 G C USP15 Missense_Mutation p.R482T 0.04 tolerated(0.39) benign(0.027) TCGA-FG-A70Z-01 12 75601452 75601452 G A KCNC2 Silent p.F104F 0.35 TCGA-FG-A70Z-01 14 105413442 105413442 G A AHNAK2 Silent p.D2782D 0.31 TCGA-FG-A70Z-01 14 55429521 55429521 A G WDHD1 Missense_Mutation p.V861A 0.30 tolerated(0.76) benign(0.002) TCGA-FG-A70Z-01 15 25346809 25346809 G C SNORD116-27 RNA 0.33 TCGA-FG-A70Z-01 15 30053922 30053922 C G TJP1 Missense_Mutation p.L248F 0.38 deleterious(0) probably_damaging(0.955) TCGA-FG-A70Z-01 16 87871512 87871512 G A SLC7A5 Missense_Mutation p.P360L 0.40 deleterious(0.01) probably_damaging(1) TCGA-FG-A70Z-01 17 19318138 19318138 G A RNF112 Missense_Mutation p.R355H 0.34 tolerated(0.12) probably_damaging(0.939) TCGA-FG-A70Z-01 17 34941754 34941754 A T GGNBP2 Missense_Mutation p.S414C 0.32 deleterious(0.04) possibly_damaging(0.54) TCGA-FG-A70Z-01 17 38906791 38906791 G A KRT25 Missense_Mutation p.A339V 0.34 deleterious(0.02) possibly_damaging(0.713) TCGA-FG-A70Z-01 17 50212408 50212408 G A CA10 Intron 0.47 TCGA-FG-A70Z-01 18 77227673 77227673 G A NFATC1 Intron 0.26 TCGA-FG-A70Z-01 19 49793874 49793874 C T SLC6A16 Nonsense_Mutation p.W643* 0.33 TCGA-FG-A70Z-01 1 150676784 150676784 C T HORMAD1 Silent p.Q280Q 0.27 TCGA-FG-A70Z-01 1 177930832 177930832 C T SEC16B Missense_Mutation p.R227H 0.36 tolerated(0.9) benign(0.001) TCGA-FG-A70Z-01 1 186114580 186114580 G A HMCN1 Missense_Mutation p.R4771Q 0.42 probably_damaging(0.979) TCGA-FG-A70Z-01 1 186280588 186280588 G A PRG4 Missense_Mutation p.R1218H 0.29 unknown(0) TCGA-FG-A70Z-01 1 234367197 234367197 G A SLC35F3 Silent p.A106A 0.43 TCGA-FG-A70Z-01 1 238053178 238053178 A G ZP4 Missense_Mutation p.M130T 0.33 tolerated(0.21) benign(0.002) TCGA-FG-A70Z-01 1 24663605 24663605 A G GRHL3 Missense_Mutation p.E217G 0.31 tolerated(0.28) possibly_damaging(0.582) TCGA-FG-A70Z-01 1 248802101 248802101 G T OR2T35 Silent p.S153S 0.12 TCGA-FG-A70Z-01 1 248845349 248845349 C T OR14I1 Missense_Mutation p.R86H 0.35 tolerated(0.31) benign(0) TCGA-FG-A70Z-01 1 27675627 27675627 G A SYTL1 Silent p.A172A 0.32 TCGA-FG-A70Z-01 1 984324 984324 C T AGRN Missense_Mutation p.R1395C 0.25 deleterious(0) probably_damaging(0.986) TCGA-FG-A70Z-01 20 60909090 60909090 C A LAMA5 Missense_Mutation p.R915S 0.31 benign(0.119) TCGA-FG-A70Z-01 21 31863890 31863890 A - KRTAP19-3 3'UTR 0.32 TCGA-FG-A70Z-01 21 43161696 43161696 C T RIPK4 Missense_Mutation p.V553M 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-FG-A70Z-01 21 45861583 45861583 C T TRPM2 Silent p.H1465H 0.24 TCGA-FG-A70Z-01 22 26057597 26057597 C T ADRBK2 Nonsense_Mutation p.Q107* 0.29 TCGA-FG-A70Z-01 2 133541329 133541329 G A NCKAP5 Nonsense_Mutation p.R1019* 0.34 TCGA-FG-A70Z-01 2 166246283 166246283 C T SCN2A Silent p.D1989D 0.36 TCGA-FG-A70Z-01 2 179423251 179423251 C T TTN Missense_Mutation p.V28979I 0.36 TCGA-FG-A70Z-01 2 179650418 179650418 G A TTN Missense_Mutation p.R808C 0.30 TCGA-FG-A70Z-01 3 14861995 14861995 G A FGD5 Missense_Mutation p.A473T 0.33 tolerated(0.27) benign(0.001) TCGA-FG-A70Z-01 4 100082212 100082212 G A RP11-696N14.1 Intron 0.41 TCGA-FG-A70Z-01 4 111427803 111427803 A G ENPEP Missense_Mutation p.Y310C 0.37 deleterious(0) probably_damaging(0.996) TCGA-FG-A70Z-01 4 88312103 88312103 C A HSD17B11 Silent p.L40L 0.32 TCGA-FG-A70Z-01 5 140857255 140857255 C T PCDHGC3 Silent p.P524P 0.28 TCGA-FG-A70Z-01 5 154397004 154397004 G A KIF4B Silent p.S1195S 0.25 TCGA-FG-A70Z-01 5 160042950 160042950 G A ATP10B Missense_Mutation p.R850W 0.32 deleterious(0.01) possibly_damaging(0.849) TCGA-FG-A70Z-01 5 36301465 36301465 G T RANBP3L Silent p.T18T 0.32 TCGA-FG-A70Z-01 5 41382519 41382519 C T PLCXD3 Missense_Mutation p.R74Q 0.31 tolerated(0.27) benign(0.19) TCGA-FG-A70Z-01 5 54275123 54275123 C T ESM1 3'UTR 0.36 TCGA-FG-A70Z-01 5 56542308 56542308 A G GPBP1 Silent p.T227T 0.31 TCGA-FG-A70Z-01 6 32154150 32154150 G A PBX2 3'UTR 0.38 TCGA-FG-A70Z-01 6 34029770 34029770 G A GRM4 Missense_Mutation p.R258W 0.33 deleterious(0) probably_damaging(0.912) TCGA-FG-A70Z-01 6 47846053 47846053 C T PTCHD4 Missense_Mutation p.V843I 0.28 tolerated(0.9) possibly_damaging(0.854) TCGA-FG-A70Z-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.88 deleterious(0.02) probably_damaging(0.974) TCGA-FG-A70Z-01 7 55273104 55273104 C T EGFR Nonsense_Mutation p.Q1143* 0.86 TCGA-FG-A70Z-01 7 55902220 55902220 C T SEPT14 Silent p.T206T 0.23 TCGA-FG-A70Z-01 7 6370435 6370435 C T FAM220A Silent p.V117V 0.21 TCGA-FG-A70Z-01 7 66785180 66785180 G A STAG3L4 RNA 0.04 TCGA-FG-A70Z-01 8 142367776 142367776 C T GPR20 Missense_Mutation p.R83Q 0.20 tolerated(0.48) benign(0.004) TCGA-FG-A70Z-01 9 137309089 137309089 G A RXRA Silent p.V232V 0.34 TCGA-FG-A70Z-01 9 139108552 139108552 G A QSOX2 Missense_Mutation p.P368L 0.26 deleterious(0.03) benign(0.02) TCGA-FG-A70Z-01 9 139888276 139888276 G A C9orf142 3'UTR 0.34 TCGA-FG-A70Z-01 9 69205471 69205471 C T CBWD6 Missense_Mutation p.R356Q 0.28 tolerated(0.16) benign(0.292) TCGA-FG-A70Z-01 9 71155541 71155541 G A TMEM252 Missense_Mutation p.R64C 0.30 tolerated(0.12) benign(0.037) TCGA-FG-A70Z-01 9 86903095 86903095 T A SLC28A3 Splice_Site p.X384_splice 0.36 TCGA-FG-A70Z-01 9 94794696 94794696 G C SPTLC1 3'UTR 0.40 TCGA-FG-A70Z-01 X 107683420 107683420 A T COL4A5 Missense_Mutation p.Q22L 0.31 unknown(0) TCGA-FG-A70Z-01 X 131573638 131573638 A T MBNL3 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-FG-A70Z-01 X 149013023 149013023 C T MAGEA8 5'UTR 0.20 TCGA-FG-A70Z-01 X 152686558 152686558 C T ZFP92 Silent p.C241C 0.44 TCGA-FG-A70Z-01 X 152960346 152960346 T A SLC6A8 Splice_Site p.X589_splice 0.44 TCGA-FG-A70Z-01 X 153599591 153599591 G A FLNA Missense_Mutation p.A8V 0.20 tolerated_low_confidence(0.53) unknown(0) TCGA-FG-A70Z-01 X 154157638 154157638 C T F8 Missense_Mutation p.R1476K 0.09 tolerated(1) benign(0.071) TCGA-FG-A70Z-01 X 47308233 47308233 G T ZNF41 Silent p.P312P 0.36 TCGA-FG-A710-01 10 100185417 100185417 C T HPS1 Missense_Mutation p.E406K 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-FG-A710-01 11 1269135 1269135 G A MUC5B Silent p.P3675P 0.06 TCGA-FG-A710-01 11 57982721 57982721 G A OR1S1 Missense_Mutation p.A169T 0.05 deleterious(0.02) possibly_damaging(0.7) TCGA-FG-A710-01 11 62433037 62433037 A C C11orf48 Intron 0.21 TCGA-FG-A710-01 12 12982412 12982414 ATG - DDX47 In_Frame_Del p.D433del 0.38 TCGA-FG-A710-01 12 33560040 33560040 T C SYT10 Missense_Mutation p.K254R 0.40 tolerated(0.19) possibly_damaging(0.755) TCGA-FG-A710-01 12 55615263 55615263 G C OR10A7 Missense_Mutation p.G152A 0.03 deleterious(0.04) possibly_damaging(0.828) TCGA-FG-A710-01 12 76881291 76881291 G T OSBPL8 Nonsense_Mutation p.S14* 0.04 TCGA-FG-A710-01 13 41379349 41379349 T C SLC25A15 Missense_Mutation p.M137T 0.11 deleterious(0.03) benign(0.05) TCGA-FG-A710-01 13 61083925 61083925 C T TDRD3 Missense_Mutation p.T296M 0.05 tolerated(0.81) possibly_damaging(0.596) TCGA-FG-A710-01 17 12908353 12908353 T C ELAC2 Silent p.P312P 0.11 TCGA-FG-A710-01 17 18333079 18333079 T C KRT17P2 RNA 0.22 TCGA-FG-A710-01 17 48265901 48265901 C T COL1A1 Missense_Mutation p.R1066H 0.30 unknown(0) TCGA-FG-A710-01 17 79988540 79988540 T C LRRC45 Silent p.S624S 0.43 TCGA-FG-A710-01 18 21226219 21226219 G A ANKRD29 Silent p.Y55Y 0.12 TCGA-FG-A710-01 19 34180275 34180275 G T CHST8 Missense_Mutation p.E36D 0.06 tolerated(0.13) benign(0.011) TCGA-FG-A710-01 19 42791799 42791799 A C CIC Missense_Mutation p.T229P 0.71 probably_damaging(0.999) TCGA-FG-A710-01 19 4550875 4550875 G A SEMA6B Nonsense_Mutation p.R353* 0.04 TCGA-FG-A710-01 1 154294528 154294528 C T AQP10 Silent p.N75N 0.35 TCGA-FG-A710-01 1 179314136 179314136 T C SOAT1 Silent p.L348L 0.05 TCGA-FG-A710-01 1 26516058 26516058 C T CNKSR1 3'UTR 0.07 TCGA-FG-A710-01 1 27058039 27058040 CA - ARID1A Frame_Shift_Del p.Q583Vfs*39 0.12 TCGA-FG-A710-01 1 78429830 78429830 C A FUBP1 Nonsense_Mutation p.E320* 0.09 TCGA-FG-A710-01 20 49509063 49509063 G A ADNP Nonsense_Mutation p.R730* 0.09 TCGA-FG-A710-01 21 32410673 32410673 G A KRTAP19-8 Silent p.G30G 0.08 TCGA-FG-A710-01 21 40570895 40570895 G T BRWD1 Missense_Mutation p.T1816N 0.06 deleterious_low_confidence(0) benign(0.135) TCGA-FG-A710-01 21 46020910 46020910 G C KRTAP10-7 Missense_Mutation p.C130S 0.05 deleterious(0.01) unknown(0) TCGA-FG-A710-01 2 175243709 175243709 T C CIR1 Silent p.E142E 0.09 TCGA-FG-A710-01 2 208725913 208725913 C T PLEKHM3 Missense_Mutation p.S675N 0.37 tolerated(0.1) possibly_damaging(0.504) TCGA-FG-A710-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A710-01 2 25463299 25463299 A G DNMT3A Missense_Mutation p.F732L 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-FG-A710-01 4 156757955 156757955 G A ASIC5 Missense_Mutation p.P374L 0.05 deleterious(0) probably_damaging(0.926) TCGA-FG-A710-01 4 57832878 57832878 C A NOA1 Missense_Mutation p.V558F 0.04 deleterious(0) probably_damaging(0.985) TCGA-FG-A710-01 4 69097010 69097010 C T TMPRSS11B Silent p.Q199Q 0.12 TCGA-FG-A710-01 4 91230393 91230393 T C CCSER1 Missense_Mutation p.S320P 0.04 deleterious_low_confidence(0.04) benign(0.056) TCGA-FG-A710-01 5 108714431 108714431 T C PJA2 Missense_Mutation p.S253G 0.39 tolerated(0.34) benign(0) TCGA-FG-A710-01 5 140182636 140182636 G A PCDHA3 Silent p.A618A 0.49 TCGA-FG-A710-01 5 140731540 140731540 C T PCDHGB1 Silent p.F571F 0.32 TCGA-FG-A710-01 5 140741655 140741655 G A PCDHGB2 Silent p.Q651Q 0.34 TCGA-FG-A710-01 6 27860923 27860923 G C HIST1H2AM Missense_Mutation p.S2C 0.31 deleterious_low_confidence(0.02) benign(0.184) TCGA-FG-A710-01 6 33423477 33423477 A C ZBTB9 Silent p.G200G 0.31 TCGA-FG-A710-01 8 145738653 145738653 C T RECQL4 Missense_Mutation p.R804Q 0.38 deleterious(0) probably_damaging(1) TCGA-FG-A710-01 8 87241960 87241960 T C SLC7A13 Missense_Mutation p.I183V 0.05 tolerated(1) benign(0.004) TCGA-FG-A710-01 9 139399934 139399934 A G NOTCH1 Missense_Mutation p.C1472R 0.05 deleterious(0) probably_damaging(1) TCGA-FG-A710-01 X 103216908 103216908 C T TMSB15B 5'Flank 0.47 TCGA-FG-A710-01 X 134988634 134988634 C T SAGE1 Silent p.N220N 0.22 TCGA-FG-A710-01 X 149924318 149924318 A G MTMR1 Missense_Mutation p.N605S 0.40 deleterious(0.02) benign(0.036) TCGA-FG-A710-01 X 31139842 31139842 T C DMD 3'UTR 0.35 TCGA-FG-A710-01 X 54259292 54259292 C T WNK3 Missense_Mutation p.R1597Q 0.38 deleterious(0) probably_damaging(0.949) TCGA-FG-A710-01 X 72433964 72433964 G A NAP1L2 Missense_Mutation p.A122V 0.36 tolerated(0.61) benign(0.01) TCGA-FG-A710-01 X 74290346 74290346 C A ABCB7 Missense_Mutation p.V408F 0.04 deleterious(0) probably_damaging(0.983) TCGA-FG-A711-01 10 30653878 30653878 G A AL161651.1 3'Flank 0.39 TCGA-FG-A711-01 10 7774441 7774441 G A ITIH2 Splice_Site p.X596_splice 0.34 TCGA-FG-A711-01 10 87898634 87898634 G A GRID1 Missense_Mutation p.T223M 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-FG-A711-01 11 26463524 26463524 T C ANO3 Missense_Mutation p.S36P 0.43 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FG-A711-01 11 62289340 62289340 G A AHNAK Silent p.D4183D 0.33 TCGA-FG-A711-01 12 30906347 30906347 C T CAPRIN2 Silent p.A117A 0.33 TCGA-FG-A711-01 14 59931159 59931159 G T GPR135 Nonsense_Mutation p.C262* 0.24 TCGA-FG-A711-01 15 101434394 101434394 G T ALDH1A3 Intron 0.33 TCGA-FG-A711-01 16 58147827 58147827 G C C16orf80 3'UTR 0.37 TCGA-FG-A711-01 17 3470222 3470222 G A SHPK Nonsense_Mutation p.R803* 0.10 TCGA-FG-A711-01 17 40761319 40761319 G A FAM134C Silent p.P8P 0.41 TCGA-FG-A711-01 17 4837891 4837891 C A GP1BA 3'UTR 0.43 TCGA-FG-A711-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.79 deleterious(0) probably_damaging(0.998) TCGA-FG-A711-01 18 61160386 61160386 A G SERPINB5 Intron 0.47 TCGA-FG-A711-01 19 39086986 39086986 G A MAP4K1 Silent p.G694G 0.13 TCGA-FG-A711-01 19 58864428 58864428 G A A1BG Missense_Mutation p.P69L 0.37 tolerated(0.42) benign(0.029) TCGA-FG-A711-01 1 115231189 115231189 C A AMPD1 Missense_Mutation p.A103S 0.03 tolerated(0.47) benign(0) TCGA-FG-A711-01 1 16375046 16375046 C T CLCNKB Silent p.G208G 0.27 TCGA-FG-A711-01 20 17437095 17437095 T A PCSK2 Splice_Site p.X401_splice 0.07 TCGA-FG-A711-01 20 34084410 34084410 A G CEP250 Missense_Mutation p.T1058A 0.40 benign(0.012) TCGA-FG-A711-01 20 55027795 55027795 G T CASS4 Missense_Mutation p.Q521H 0.06 tolerated(0.08) benign(0.111) TCGA-FG-A711-01 21 32119422 32119422 G A KRTAP21-2 Silent p.Y33Y 0.77 TCGA-FG-A711-01 22 41723244 41723244 A T ZC3H7B Missense_Mutation p.K107M 0.31 deleterious(0.03) probably_damaging(0.983) TCGA-FG-A711-01 2 103120021 103120021 T C SLC9A4 Silent p.L279L 0.42 TCGA-FG-A711-01 2 10582221 10582221 C A ODC1 Missense_Mutation p.R277I 0.54 deleterious(0) possibly_damaging(0.901) TCGA-FG-A711-01 2 169626053 169626053 A G CERS6 Missense_Mutation p.S354G 0.13 deleterious(0) probably_damaging(0.952) TCGA-FG-A711-01 2 172585349 172585349 C T DYNC1I2 Silent p.C460C 0.08 TCGA-FG-A711-01 2 201438253 201438253 A G SGOL2 Missense_Mutation p.I1062V 0.38 tolerated(1) benign(0.002) TCGA-FG-A711-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A711-01 2 242594686 242594686 C A ATG4B Missense_Mutation p.A129E 0.11 deleterious(0) possibly_damaging(0.72) TCGA-FG-A711-01 2 31167747 31167747 G A GALNT14 Silent p.R273R 0.33 TCGA-FG-A711-01 3 113677636 113677636 C T ZDHHC23 Intron 0.40 TCGA-FG-A711-01 3 123987699 123987699 G A KALRN Missense_Mutation p.R187Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-FG-A711-01 3 45134906 45134906 G A CDCP1 Missense_Mutation p.S497F 0.32 tolerated(0.7) benign(0.005) TCGA-FG-A711-01 4 100540154 100540154 A - MTTP Frame_Shift_Del p.A749Pfs*3 0.09 TCGA-FG-A711-01 4 104640397 104640397 C G TACR3 Missense_Mutation p.A146P 0.38 deleterious(0) probably_damaging(0.978) TCGA-FG-A711-01 4 74608186 74608186 A T IL8 3'UTR 0.37 TCGA-FG-A711-01 5 140725473 140725473 G A PCDHGA3 Missense_Mutation p.E625K 0.05 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FG-A711-01 5 71638862 71638862 A G PTCD2 Missense_Mutation p.N276S 0.11 tolerated(0.05) benign(0.11) TCGA-FG-A711-01 5 98232063 98232063 T A CHD1 Missense_Mutation p.E526V 0.16 tolerated(0.29) benign(0.235) TCGA-FG-A711-01 6 116544280 116544280 C T NT5DC1 Missense_Mutation p.P263L 0.33 deleterious(0.04) possibly_damaging(0.534) TCGA-FG-A711-01 6 167550306 167550306 C T CCR6 Silent p.V196V 0.04 TCGA-FG-A711-01 6 24582557 24582557 C T KIAA0319 Missense_Mutation p.E371K 0.30 deleterious(0.02) possibly_damaging(0.605) TCGA-FG-A711-01 6 351035 351035 C T DUSP22 3'UTR 0.20 TCGA-FG-A711-01 6 52616504 52616504 G T GSTA2 Silent p.V139V 0.40 TCGA-FG-A711-01 8 121354641 121354641 T A COL14A1 Missense_Mutation p.M1615K 0.36 deleterious(0.01) benign(0.222) TCGA-FG-A711-01 8 20038418 20038418 G A SLC18A1 Missense_Mutation p.R20W 0.49 deleterious(0) possibly_damaging(0.816) TCGA-FG-A711-01 9 130270452 130270452 G A FAM129B Missense_Mutation p.R488W 0.10 deleterious(0) probably_damaging(0.994) TCGA-FG-A711-01 9 91606803 91606803 G A C9orf47 Missense_Mutation p.R170H 0.04 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-FG-A711-01 X 118602491 118602491 G A SLC25A5 Missense_Mutation p.A5T 0.29 tolerated(0.11) benign(0.003) TCGA-FG-A711-01 X 118725078 118725078 A T NKRF Missense_Mutation p.S119T 0.03 tolerated(0.42) benign(0.055) TCGA-FG-A711-01 X 153128221 153128221 G A L1CAM Missense_Mutation p.S1224L 0.29 deleterious(0) probably_damaging(1) TCGA-FG-A711-01 X 2854890 2854890 T C ARSE Missense_Mutation p.Q435R 0.33 tolerated(1) benign(0.001) TCGA-FG-A711-01 X 55782315 55782315 T C RRAGB Silent p.H287H 0.40 TCGA-FG-A711-01 X 76937737 76937740 TTAA - ATRX Frame_Shift_Del p.I1003Kfs*29 0.46 TCGA-FG-A713-01 10 43016558 43016558 T C ZNF37BP RNA 0.31 TCGA-FG-A713-01 11 114278301 114278301 A C RBM7 Missense_Mutation p.Q191H 0.13 deleterious(0.04) benign(0.009) TCGA-FG-A713-01 11 125359621 125359621 G C FEZ1 Missense_Mutation p.S18C 0.21 tolerated(0.22) benign(0) TCGA-FG-A713-01 11 65320906 65320906 G A LTBP3 Silent p.P320P 0.19 TCGA-FG-A713-01 12 109703224 109703224 G T ACACB Missense_Mutation p.V2382L 0.22 deleterious(0.03) benign(0.051) TCGA-FG-A713-01 12 113533219 113533219 G T DTX1 Missense_Mutation p.K546N 0.12 deleterious(0) probably_damaging(0.942) TCGA-FG-A713-01 12 307979 307979 C T SLC6A12 Missense_Mutation p.R277H 0.16 deleterious(0) probably_damaging(1) TCGA-FG-A713-01 12 49087746 49087746 T C CCNT1 Silent p.Q417Q 0.25 TCGA-FG-A713-01 12 49166308 49166308 G T ADCY6 Silent p.T880T 0.07 TCGA-FG-A713-01 12 49580473 49580476 GAAG - TUBA1A Frame_Shift_Del p.F49Tfs*19 0.17 TCGA-FG-A713-01 12 57409569 57409569 G A TAC3 Silent p.L5L 0.12 TCGA-FG-A713-01 12 85459188 85459188 C T LRRIQ1 Missense_Mutation p.A847V 0.11 tolerated(1) benign(0.081) TCGA-FG-A713-01 13 53298165 53298165 G A LECT1 Silent p.G145G 0.43 TCGA-FG-A713-01 14 31618142 31618142 T C HECTD1 Missense_Mutation p.R794G 0.12 deleterious(0) probably_damaging(0.909) TCGA-FG-A713-01 14 59797962 59797962 G A DAAM1 Silent p.S532S 0.13 TCGA-FG-A713-01 15 33023158 33023158 G A GREM1 Silent p.L89L 0.18 TCGA-FG-A713-01 16 5053535 5053535 C T SEC14L5 Silent p.I421I 0.17 TCGA-FG-A713-01 17 61574317 61574317 G A ACE Nonsense_Mutation p.W1221* 0.21 TCGA-FG-A713-01 18 13100327 13100327 A G CEP192 Silent p.R2229R 0.13 TCGA-FG-A713-01 19 3613264 3613264 G A CACTIN Silent p.D526D 0.16 TCGA-FG-A713-01 19 42791744 42791744 C A CIC Missense_Mutation p.F210L 0.19 probably_damaging(0.997) TCGA-FG-A713-01 19 885978 885978 C G MED16 Missense_Mutation p.G224A 0.30 deleterious(0.02) probably_damaging(0.939) TCGA-FG-A713-01 1 12943140 12943140 C G PRAMEF4 Missense_Mutation p.A26P 0.13 deleterious(0) probably_damaging(0.948) TCGA-FG-A713-01 1 6639509 6639509 G T TAS1R1 Silent p.L797L 0.19 TCGA-FG-A713-01 1 7998781 7998781 C A TNFRSF9 Missense_Mutation p.G70C 0.11 deleterious(0) probably_damaging(1) TCGA-FG-A713-01 2 149447887 149447887 C - EPC2 Frame_Shift_Del p.Y86* 0.10 TCGA-FG-A713-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A713-01 2 73650092 73650092 G A ALMS1 Missense_Mutation p.A252T 0.17 possibly_damaging(0.864) TCGA-FG-A713-01 3 100378648 100378648 C G GPR128 Missense_Mutation p.S647W 0.10 deleterious(0) probably_damaging(0.916) TCGA-FG-A713-01 3 129305068 129305068 C G PLXND1 Silent p.G556G 0.38 TCGA-FG-A713-01 4 30724278 30724278 G A PCDH7 Missense_Mutation p.V412M 0.10 deleterious(0.02) probably_damaging(0.952) TCGA-FG-A713-01 4 79207664 79207664 G A FRAS1 Missense_Mutation p.G502D 0.06 benign(0.383) TCGA-FG-A713-01 6 1624340 1624340 G A GMDS 3'UTR 0.36 TCGA-FG-A713-01 7 135078909 135078909 T C CNOT4 Missense_Mutation p.N463S 0.21 tolerated(0.29) benign(0.229) TCGA-FG-A713-01 7 4917591 4917591 C T RADIL Silent p.S60S 0.12 TCGA-FG-A713-01 8 10387145 10387145 G A PRSS55 Missense_Mutation p.G95S 0.10 deleterious(0) probably_damaging(0.999) TCGA-FG-A713-01 8 41521247 41521247 T C ANK1 Missense_Mutation p.Q1844R 0.06 tolerated_low_confidence(0.54) benign(0.417) TCGA-FG-A713-01 X 120008870 120008870 C T CT47B1 Missense_Mutation p.A219T 0.04 tolerated(0.39) unknown(0) TCGA-FG-A713-01 X 153583249 153583249 C T FLNA Missense_Mutation p.V1721I 0.06 tolerated(0.18) benign(0.003) TCGA-FG-A713-01 X 76944310 76944310 C T ATRX Splice_Site p.X198_splice 0.18 TCGA-FG-A87N-01 10 115964540 115964540 T C TDRD1 Silent p.C395C 0.71 TCGA-FG-A87N-01 10 13534788 13534788 T - BEND7 Frame_Shift_Del p.V169Cfs*11 0.33 TCGA-FG-A87N-01 10 21098829 21098829 T C NEBL Splice_Site p.X840_splice 0.35 TCGA-FG-A87N-01 10 44112341 44112341 A G ZNF485 Missense_Mutation p.T284A 0.38 tolerated(0.71) benign(0.018) TCGA-FG-A87N-01 11 57995896 57995896 C A OR10Q1 Missense_Mutation p.G151V 0.51 tolerated(0.08) benign(0.12) TCGA-FG-A87N-01 12 2909744 2909744 G A FKBP4 Splice_Site p.X344_splice 0.47 TCGA-FG-A87N-01 12 66703572 66703572 T A HELB Silent p.T288T 0.44 TCGA-FG-A87N-01 13 47266679 47266679 C T LRCH1 Silent p.D341D 0.44 TCGA-FG-A87N-01 14 52188776 52188776 G A FRMD6 Silent p.S490S 0.55 TCGA-FG-A87N-01 14 76259309 76259309 G A TTLL5 Missense_Mutation p.E1013K 0.43 deleterious(0.04) benign(0.271) TCGA-FG-A87N-01 15 67529108 67529108 C T AAGAB Missense_Mutation p.V42M 0.31 deleterious(0) probably_damaging(0.959) TCGA-FG-A87N-01 15 74276266 74276266 C T STOML1 3'UTR 0.37 TCGA-FG-A87N-01 16 22361098 22361098 C T CDR2 Missense_Mutation p.V89I 0.07 tolerated(0.17) benign(0.012) TCGA-FG-A87N-01 16 56602775 56602775 G A MT4 Silent p.P40P 0.43 TCGA-FG-A87N-01 16 57798074 57798074 C T KIFC3 Missense_Mutation p.G533D 0.05 deleterious(0) probably_damaging(1) TCGA-FG-A87N-01 17 1582120 1582120 C T PRPF8 Missense_Mutation p.R552H 0.43 deleterious(0.01) benign(0.172) TCGA-FG-A87N-01 17 15971338 15971338 C T NCOR1 Silent p.G1537G 0.37 TCGA-FG-A87N-01 17 29654516 29654516 G C NF1 Splice_Site p.X1757_splice 0.96 TCGA-FG-A87N-01 17 73695883 73695883 C T SAP30BP Missense_Mutation p.R110W 0.40 deleterious(0.04) benign(0.247) TCGA-FG-A87N-01 18 40850545 40850545 T C SYT4 Missense_Mutation p.K347E 0.49 deleterious(0) possibly_damaging(0.804) TCGA-FG-A87N-01 19 40953796 40953796 C T BLVRB Silent p.%3D 0.21 TCGA-FG-A87N-01 19 9578508 9578508 C T ZNF560 Missense_Mutation p.G372E 0.46 deleterious(0.04) probably_damaging(0.993) TCGA-FG-A87N-01 1 145761247 145761247 G A PDZK1 Missense_Mutation p.A354T 0.41 tolerated(0.2) possibly_damaging(0.721) TCGA-FG-A87N-01 1 214818125 214818125 A T CENPF Nonsense_Mutation p.K1738* 0.38 TCGA-FG-A87N-01 1 223179138 223179138 T G DISP1 Missense_Mutation p.L1467V 0.37 tolerated_low_confidence(0.55) benign(0.001) TCGA-FG-A87N-01 20 25228747 25228747 C G PYGB 5'UTR 0.40 TCGA-FG-A87N-01 20 60854344 60854344 G A OSBPL2 Missense_Mutation p.G208D 0.06 deleterious(0) probably_damaging(1) TCGA-FG-A87N-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FG-A87N-01 4 1232006 1232008 AGA - CTBP1 In_Frame_Del p.F53del 0.43 TCGA-FG-A87N-01 4 73280660 73280660 T A ADAMTS3 Missense_Mutation p.E178V 0.42 deleterious(0) benign(0.259) TCGA-FG-A87N-01 4 88106791 88106791 T C KLHL8 Missense_Mutation p.Y126C 0.43 deleterious(0) probably_damaging(1) TCGA-FG-A87N-01 7 102952301 102952301 T C PMPCB Silent p.Y429Y 0.09 TCGA-FG-A87N-01 8 117778967 117778967 G A UTP23 Missense_Mutation p.R42H 0.12 tolerated(0.09) benign(0.004) TCGA-FG-A87N-01 8 145626338 145626338 G A CPSF1 Silent p.H173H 0.35 TCGA-FG-A87N-01 9 136648690 136648691 - TG VAV2 Frame_Shift_Ins p.M553Tfs*17 0.27 TCGA-FG-A87N-01 X 108902736 108902736 G T ACSL4 Missense_Mutation p.Q609K 0.36 tolerated(1) benign(0.322) TCGA-FG-A87N-01 X 119673128 119673128 A G CUL4B Missense_Mutation p.I597T 0.41 deleterious(0.02) probably_damaging(1) TCGA-FG-A87N-01 X 76931718 76931718 T C ATRX Intron 0.45 TCGA-FG-A87Q-01 11 12281413 12281413 C T MICAL2 Silent p.A1101A 0.19 TCGA-FG-A87Q-01 11 2424084 2424084 C T TSSC4 Missense_Mutation p.P74L 0.44 tolerated(0.25) benign(0.023) TCGA-FG-A87Q-01 11 2444189 2444189 G A TRPM5 Silent p.G26G 0.47 TCGA-FG-A87Q-01 11 55587765 55587765 G A OR5D18 Silent p.A220A 0.15 TCGA-FG-A87Q-01 11 71729545 71729545 T C NUMA1 Missense_Mutation p.M253V 0.12 benign(0.001) TCGA-FG-A87Q-01 12 109604740 109604740 C A ACACB Missense_Mutation p.T243N 0.08 tolerated(0.08) benign(0.197) TCGA-FG-A87Q-01 12 55641906 55641907 - T OR6C74 Frame_Shift_Ins p.A280Cfs*21 0.27 TCGA-FG-A87Q-01 12 56214231 56214231 G A ORMDL2 3'UTR 0.15 TCGA-FG-A87Q-01 14 105419205 105419205 C T AHNAK2 Silent p.P861P 0.27 TCGA-FG-A87Q-01 14 20216301 20216301 T C OR4Q3 Missense_Mutation p.S239P 0.31 deleterious(0.01) probably_damaging(0.925) TCGA-FG-A87Q-01 14 60194231 60194231 C T RTN1 Missense_Mutation p.G391R 0.31 deleterious(0.02) benign(0.146) TCGA-FG-A87Q-01 15 44705563 44705563 C G CASC4 Missense_Mutation p.P424A 0.11 tolerated(0.75) probably_damaging(0.993) TCGA-FG-A87Q-01 15 64970400 64970400 G A ZNF609 Missense_Mutation p.R1163Q 0.29 deleterious(0.02) probably_damaging(0.971) TCGA-FG-A87Q-01 15 85164512 85164512 C T ZSCAN2 Silent p.Y362Y 0.30 TCGA-FG-A87Q-01 16 2376171 2376171 G A ABCA3 Silent p.N53N 0.26 TCGA-FG-A87Q-01 16 28944769 28944769 G A CD19 Silent p.K258K 0.39 TCGA-FG-A87Q-01 17 79409603 79409603 G A RP11-1055B8.7 Missense_Mutation p.A410T 0.30 benign(0.359) TCGA-FG-A87Q-01 18 28662324 28662324 C T DSC2 Silent p.K381K 0.27 TCGA-FG-A87Q-01 18 48439304 48439304 A C ME2 Missense_Mutation p.I126L 0.32 deleterious(0.01) possibly_damaging(0.755) TCGA-FG-A87Q-01 19 2799775 2799775 C T THOP1 Missense_Mutation p.T192M 0.19 deleterious(0) benign(0.399) TCGA-FG-A87Q-01 19 35837090 35837090 G A CD22 Silent p.P788P 0.27 TCGA-FG-A87Q-01 19 5772949 5772949 C T CATSPERD Silent p.F638F 0.14 TCGA-FG-A87Q-01 19 9577519 9577519 G A ZNF560 Missense_Mutation p.R702C 0.24 deleterious(0.04) benign(0) TCGA-FG-A87Q-01 1 111060770 111060770 C T KCNA10 Missense_Mutation p.A214T 0.35 tolerated(0.12) possibly_damaging(0.7) TCGA-FG-A87Q-01 1 151377720 151377720 A G POGZ Missense_Mutation p.L1264S 0.30 deleterious(0) probably_damaging(0.999) TCGA-FG-A87Q-01 1 196250026 196250026 G C KCNT2 Missense_Mutation p.I958M 0.23 deleterious(0.02) possibly_damaging(0.461) TCGA-FG-A87Q-01 1 201330287 201330287 G C TNNT2 Intron 0.30 TCGA-FG-A87Q-01 1 43395570 43395570 C T SLC2A1 Missense_Mutation p.R218H 0.28 tolerated(0.09) possibly_damaging(0.839) TCGA-FG-A87Q-01 1 43778122 43778122 C T TIE1 Missense_Mutation p.R593W 0.16 tolerated(0.08) possibly_damaging(0.906) TCGA-FG-A87Q-01 1 47351210 47351210 C T CYP4Z2P RNA 0.55 TCGA-FG-A87Q-01 1 62676044 62676044 A T L1TD1 Missense_Mutation p.Q533L 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-FG-A87Q-01 1 78958825 78958825 C T PTGFR Missense_Mutation p.R133W 0.28 deleterious(0) probably_damaging(1) TCGA-FG-A87Q-01 20 23669406 23669406 C T CST4 Silent p.P67P 0.17 TCGA-FG-A87Q-01 20 4155695 4155695 C T SMOX 5'UTR 0.25 TCGA-FG-A87Q-01 20 60966137 60966137 G A CABLES2 Missense_Mutation p.R443C 0.25 deleterious(0) probably_damaging(0.989) TCGA-FG-A87Q-01 22 46859990 46859990 A G CELSR1 Missense_Mutation p.L1266P 0.26 tolerated(0.07) probably_damaging(0.976) TCGA-FG-A87Q-01 2 131704164 131704164 C T ARHGEF4 Missense_Mutation p.T128M 0.22 tolerated(0.21) benign(0.005) TCGA-FG-A87Q-01 2 159196883 159196883 C G CCDC148 Missense_Mutation p.Q119H 0.12 tolerated(0.13) benign(0) TCGA-FG-A87Q-01 2 179431823 179431823 G T TTN Missense_Mutation p.L26346M 0.29 TCGA-FG-A87Q-01 2 190541620 190541620 C G ANKAR Missense_Mutation p.P135R 0.25 deleterious(0) probably_damaging(0.992) TCGA-FG-A87Q-01 2 86434352 86434352 C - MRPL35 Frame_Shift_Del p.L94* 0.28 TCGA-FG-A87Q-01 3 138738846 138738846 G A PRR23B Missense_Mutation p.R220C 0.30 deleterious(0) possibly_damaging(0.761) TCGA-FG-A87Q-01 3 168806963 168806963 T C MECOM Missense_Mutation p.E1014G 0.15 tolerated(0.42) benign(0.381) TCGA-FG-A87Q-01 3 184003274 184003274 A G ECE2 Missense_Mutation p.N504S 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-FG-A87Q-01 3 48629445 48629445 C T COL7A1 Missense_Mutation p.A415T 0.26 unknown(0) TCGA-FG-A87Q-01 3 7188171 7188171 C T GRM7 Silent p.P184P 0.21 TCGA-FG-A87Q-01 5 135693011 135693011 C T TRPC7 Missense_Mutation p.R22H 0.23 deleterious(0.04) benign(0.189) TCGA-FG-A87Q-01 5 170235639 170235639 C T GABRP Missense_Mutation p.R239W 0.35 deleterious(0) possibly_damaging(0.837) TCGA-FG-A87Q-01 5 180669308 180669308 C G GNB2L1 Missense_Mutation p.E49D 0.11 tolerated(0.46) benign(0.002) TCGA-FG-A87Q-01 5 26885932 26885932 C T CDH9 Missense_Mutation p.R558H 0.21 deleterious(0.04) probably_damaging(0.93) TCGA-FG-A87Q-01 5 89949239 89949239 T C GPR98 Missense_Mutation p.L1283P 0.26 benign(0.044) TCGA-FG-A87Q-01 6 127652088 127652088 G T ECHDC1 Missense_Mutation p.S35Y 0.34 tolerated(0.24) benign(0.14) TCGA-FG-A87Q-01 6 33382304 33382304 T G PHF1 Silent p.L309L 0.26 TCGA-FG-A87Q-01 6 43415637 43415637 C T ABCC10 Silent p.D1307D 0.17 TCGA-FG-A87Q-01 6 46135348 46135348 G T ENPP5 Missense_Mutation p.L218I 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-FG-A87Q-01 7 139661796 139661796 G A TBXAS1 Missense_Mutation p.V347I 0.16 tolerated(0.2) benign(0.103) TCGA-FG-A87Q-01 7 142651436 142651436 G T KEL Nonsense_Mutation p.Y253* 0.19 TCGA-FG-A87Q-01 7 55221744 55221744 C T EGFR Missense_Mutation p.T263I 0.39 tolerated(0.13) possibly_damaging(0.88) TCGA-FG-A87Q-01 7 55249022 55249022 G A EGFR Missense_Mutation p.V774M 0.09 deleterious(0) probably_damaging(0.998) TCGA-FG-A87Q-01 7 75511478 75511478 C T RHBDD2 Silent p.L170L 0.20 TCGA-FG-A87Q-01 7 81600001 81600001 A G CACNA2D1 Missense_Mutation p.Y732H 0.25 deleterious(0) probably_damaging(0.964) TCGA-FG-A87Q-01 7 98254436 98254436 C T NPTX2 Silent p.I282I 0.14 TCGA-FG-A87Q-01 8 105001535 105001535 G A RIMS2 Missense_Mutation p.R977Q 0.24 tolerated_low_confidence(0.35) possibly_damaging(0.86) TCGA-FG-A87Q-01 8 144893419 144893419 C T SCRIB Missense_Mutation p.V335M 0.27 benign(0.087) TCGA-FG-A87Q-01 8 18080488 18080488 G A NAT1 3'UTR 0.44 TCGA-FG-A87Q-01 8 24304756 24304756 C T ADAM7 Missense_Mutation p.L72F 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-FG-A87Q-01 8 25747368 25747368 C T EBF2 Silent p.T217T 0.26 TCGA-FG-A87Q-01 8 2886955 2886955 C T CSMD1 Missense_Mutation p.G2581S 0.21 possibly_damaging(0.885) TCGA-FG-A87Q-01 8 39624684 39624684 G A ADAM2 Silent p.C433C 0.28 TCGA-FG-A87Q-01 8 69552632 69552632 T G C8orf34 Missense_Mutation p.M376R 0.23 tolerated(0.67) probably_damaging(0.973) TCGA-FG-A87Q-01 9 104133578 104133578 C G BAAT Missense_Mutation p.E37Q 0.19 tolerated(0.11) benign(0.021) TCGA-FG-A87Q-01 9 131670897 131670897 C T LRRC8A Missense_Mutation p.A485V 0.33 tolerated(0.52) benign(0.346) TCGA-FG-A87Q-01 9 32784298 32784298 C T TMEM215 Silent p.N39N 0.07 TCGA-FG-A87Q-01 X 114082601 114082601 G A HTR2C Missense_Mutation p.V129I 0.28 tolerated(1) benign(0.042) TCGA-FG-A87Q-01 X 119500506 119500506 G A ATP1B4 Missense_Mutation p.E64K 0.33 tolerated(0.22) benign(0.032) TCGA-FG-A87Q-01 X 15287957 15287957 C T ASB9 Missense_Mutation p.A14T 0.12 tolerated(0.58) benign(0.001) TCGA-FG-A87Q-01 X 20227405 20227405 C A RPS6KA3 Splice_Site p.X81_splice 0.28 TCGA-FG-A87Q-01 X 23397847 23397847 G A PTCHD1 Missense_Mutation p.R164Q 0.21 tolerated(0.61) possibly_damaging(0.784) TCGA-FG-A87Q-01 X 74520850 74520850 G T UPRT Intron 0.31 TCGA-FG-A87Q-01 X 77913359 77913359 G A ZCCHC5 Missense_Mutation p.P187S 0.16 tolerated(0.27) benign(0.001) TCGA-FG-A87Q-01 X 85119689 85119689 C T CHM Silent p.S636S 0.20 TCGA-FN-7833-01 11 108383673 108383673 G A EXPH5 Missense_Mutation p.T854I 0.25 tolerated(0.46) benign(0.082) TCGA-FN-7833-01 11 4842846 4842846 C T OR51F2 Silent p.L77L 0.17 TCGA-FN-7833-01 12 119909950 119909950 T C CCDC60 Missense_Mutation p.Y108H 0.07 tolerated(0.53) possibly_damaging(0.804) TCGA-FN-7833-01 16 1291161 1291161 C T TPSAB1 Silent p.G23G 0.07 TCGA-FN-7833-01 16 1634358 1634358 G A IFT140 Missense_Mutation p.R407W 0.08 deleterious(0) benign(0.339) TCGA-FN-7833-01 17 1557307 1557307 C T PRPF8 Silent p.V1997V 0.19 TCGA-FN-7833-01 17 47688737 47688737 T G SPOP Missense_Mutation p.D188A 0.40 deleterious(0.02) benign(0.003) TCGA-FN-7833-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.41 deleterious(0.04) possibly_damaging(0.83) TCGA-FN-7833-01 17 7578474 7578475 - GG TP53 Frame_Shift_Ins p.P153Rfs*18 0.29 TCGA-FN-7833-01 19 9204306 9204306 C T OR1M1 Missense_Mutation p.P129L 0.38 deleterious(0) probably_damaging(0.999) TCGA-FN-7833-01 1 207930382 207930382 T C CD46 Missense_Mutation p.F41L 0.42 tolerated(0.1) possibly_damaging(0.678) TCGA-FN-7833-01 20 16553925 16553925 C A KIF16B 5'UTR 0.09 TCGA-FN-7833-01 2 189927953 189927953 A G COL5A2 Missense_Mutation p.I605T 0.38 possibly_damaging(0.644) TCGA-FN-7833-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-FN-7833-01 4 175220324 175220324 C T CEP44 Missense_Mutation p.R18C 0.49 deleterious(0) probably_damaging(0.984) TCGA-FN-7833-01 5 37044565 37044565 G - NIPBL Frame_Shift_Del p.K2075Nfs*8 0.29 TCGA-FN-7833-01 6 106553131 106553131 G T PRDM1 Missense_Mutation p.G366C 0.05 tolerated(0.17) benign(0.009) TCGA-FN-7833-01 6 117019898 117019898 G C KPNA5 Missense_Mutation p.Q124H 0.18 deleterious(0.03) benign(0.19) TCGA-FN-7833-01 7 48390284 48390284 T C ABCA13 Missense_Mutation p.F3417L 0.38 benign(0.022) TCGA-FN-7833-01 9 113703856 113703881 AAAATGGCCCAGAAGACTAAGTAAGA - LPAR1 Frame_Shift_Del p.S205Qfs*30 0.12 TCGA-FN-7833-01 9 371468 371468 G A DOCK8 Missense_Mutation p.A637T 0.43 tolerated(0.07) probably_damaging(1) TCGA-FN-7833-01 X 107821211 107821211 A T COL4A5 Silent p.G213G 0.91 TCGA-FN-7833-01 X 122758005 122758005 C T THOC2 Missense_Mutation p.R1075Q 0.86 deleterious(0) possibly_damaging(0.608) TCGA-FN-7833-01 X 76855018 76855019 - T ATRX Frame_Shift_Ins p.D1940Rfs*2 0.50 TCGA-HT-7467-01 10 23248333 23248333 G C ARMC3 Missense_Mutation p.V123L 0.08 tolerated(0.07) benign(0.373) TCGA-HT-7467-01 10 37442521 37442521 C A ANKRD30A Missense_Mutation p.Q521K 0.13 tolerated(0.71) benign(0.292) TCGA-HT-7467-01 11 59211138 59211138 T C OR5A1 Missense_Mutation p.I166T 0.12 tolerated(0.45) possibly_damaging(0.794) TCGA-HT-7467-01 11 62677198 62677198 G A CHRM1 Nonsense_Mutation p.Q459* 0.15 TCGA-HT-7467-01 12 121769171 121769171 G A ANAPC5 Silent p.H337H 0.21 TCGA-HT-7467-01 12 4737521 4737521 C T AKAP3 Missense_Mutation p.V183I 0.17 deleterious(0.01) possibly_damaging(0.593) TCGA-HT-7467-01 13 110813712 110813712 C T COL4A1 Silent p.T1489T 0.15 TCGA-HT-7467-01 14 23354154 23354154 G A REM2 Silent p.V125V 0.21 TCGA-HT-7467-01 14 24035874 24035874 C T AP1G2 Missense_Mutation p.A76T 0.14 deleterious(0) benign(0.059) TCGA-HT-7467-01 17 1516558 1516558 G A SLC43A2 Silent p.S144S 0.17 TCGA-HT-7467-01 17 74077297 74077297 C T EXOC7 3'Flank 0.19 TCGA-HT-7467-01 18 21364088 21364088 C T LAMA3 Missense_Mutation p.R524C 0.13 possibly_damaging(0.901) TCGA-HT-7467-01 19 42791372 42791373 AG - CIC Frame_Shift_Del p.S146* 0.14 TCGA-HT-7467-01 19 55693461 55693461 G A PTPRH Nonsense_Mutation p.Q1041* 0.07 TCGA-HT-7467-01 19 8841797 8841797 T C OR2Z1 Missense_Mutation p.M136T 0.19 deleterious(0) probably_damaging(0.989) TCGA-HT-7467-01 1 17413096 17413096 C T PADI2 Missense_Mutation p.V252M 0.16 deleterious(0) probably_damaging(1) TCGA-HT-7467-01 1 184723669 184723669 T C EDEM3 Missense_Mutation p.T38A 0.08 tolerated(0.45) benign(0) TCGA-HT-7467-01 1 186863284 186863284 T G PLA2G4A Missense_Mutation p.F107V 0.30 deleterious(0.02) possibly_damaging(0.604) TCGA-HT-7467-01 1 214510159 214510159 A G SMYD2 3'UTR 0.14 TCGA-HT-7467-01 1 36379854 36379855 - A AGO1 Frame_Shift_Ins p.P607Tfs*32 0.22 TCGA-HT-7467-01 1 46976279 46976279 C T DMBX1 Missense_Mutation p.R96C 0.11 deleterious(0) probably_damaging(1) TCGA-HT-7467-01 1 78435640 78435640 A C FUBP1 Nonsense_Mutation p.Y60* 0.27 TCGA-HT-7467-01 1 78435643 78435643 A C FUBP1 Silent p.G59G 0.26 TCGA-HT-7467-01 20 17339014 17339014 C T PCSK2 Nonsense_Mutation p.R109* 0.11 TCGA-HT-7467-01 20 48700714 48700714 T C UBE2V1 Silent p.R106R 0.16 TCGA-HT-7467-01 20 57576621 57576621 G A CTSZ Missense_Mutation p.A129V 0.16 tolerated(0.06) benign(0.211) TCGA-HT-7467-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7467-01 2 220349218 220349219 CT - SPEG Frame_Shift_Del p.L2345Vfs*44 0.30 TCGA-HT-7467-01 4 160251116 160251116 G A RAPGEF2 Missense_Mutation p.R258Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-HT-7467-01 4 77317545 77317545 A G CCDC158 Silent p.P55P 0.08 TCGA-HT-7467-01 5 101592891 101592891 G A SLCO4C1 Missense_Mutation p.T466M 0.10 tolerated(0.05) benign(0.005) TCGA-HT-7467-01 6 46977421 46977421 C T GPR110 Missense_Mutation p.V584I 0.09 tolerated(0.23) benign(0.099) TCGA-HT-7467-01 8 103297901 103297901 C T UBR5 Missense_Mutation p.S1775N 0.19 tolerated(0.32) probably_damaging(0.914) TCGA-HT-7467-01 8 118170064 118170064 G A SLC30A8 Missense_Mutation p.A185T 0.16 deleterious(0) probably_damaging(1) TCGA-HT-7467-01 8 120628508 120628508 T A ENPP2 Missense_Mutation p.Q258H 0.12 deleterious(0) probably_damaging(0.993) TCGA-HT-7467-01 8 25181376 25181376 C T DOCK5 Missense_Mutation p.S543L 0.29 deleterious(0) possibly_damaging(0.718) TCGA-HT-7467-01 9 18928829 18928829 C T FAM154A Missense_Mutation p.V216M 0.17 tolerated(0.23) benign(0.025) TCGA-HT-7468-01 11 1477639 1477639 C T BRSK2 Missense_Mutation p.T623M 0.24 deleterious(0.02) possibly_damaging(0.807) TCGA-HT-7468-01 14 21792899 21792899 G A RPGRIP1 Missense_Mutation p.E629K 0.05 deleterious(0) probably_damaging(0.998) TCGA-HT-7468-01 17 42225428 42225428 C T C17orf53 Missense_Mutation p.T86M 0.38 tolerated(1) benign(0.003) TCGA-HT-7468-01 19 17945744 17945744 C A JAK3 Missense_Mutation p.A706S 0.42 tolerated(0.23) benign(0.173) TCGA-HT-7468-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.73 probably_damaging(1) TCGA-HT-7468-01 1 248059887 248059887 C T OR2W3 3'UTR 0.54 TCGA-HT-7468-01 1 27105550 27105550 C T ARID1A Nonsense_Mutation p.R1721* 0.12 TCGA-HT-7468-01 1 82408735 82408735 C G LPHN2 Missense_Mutation p.C160W 0.16 deleterious(0) probably_damaging(0.99) TCGA-HT-7468-01 2 158152216 158152216 G A GALNT5 Missense_Mutation p.V595I 0.04 tolerated(0.16) benign(0.243) TCGA-HT-7468-01 2 179434377 179434377 G A TTN Silent p.D25494D 0.18 TCGA-HT-7468-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7468-01 3 178952072 178952072 A G PIK3CA Missense_Mutation p.M1043V 0.48 tolerated(0.06) benign(0.037) TCGA-HT-7468-01 3 38936278 38936278 G T SCN11A Missense_Mutation p.Q861K 0.41 tolerated(0.82) benign(0.015) TCGA-HT-7468-01 5 37048690 37048693 TCAG - NIPBL Frame_Shift_Del p.V2227Ifs*2 0.46 TCGA-HT-7468-01 6 32053695 32053695 G A TNXB Missense_Mutation p.R994C 0.45 possibly_damaging(0.862) TCGA-HT-7468-01 7 122768985 122768985 C T SLC13A1 Silent p.V349V 0.38 TCGA-HT-7468-01 7 89929253 89929253 G A C7orf63 Missense_Mutation p.A644T 0.50 tolerated(0.26) possibly_damaging(0.506) TCGA-HT-7469-01 10 116060060 116060060 G A AFAP1L2 Missense_Mutation p.T617M 0.08 tolerated(0.19) benign(0.026) TCGA-HT-7469-01 10 13825006 13825006 C T FRMD4A Silent p.R100R 0.40 TCGA-HT-7469-01 10 6527130 6527130 C T PRKCQ Silent p.P334P 0.03 TCGA-HT-7469-01 11 117075135 117075135 G A TAGLN 3'UTR 0.29 TCGA-HT-7469-01 11 118374340 118374340 C T KMT2A Missense_Mutation p.P2578L 0.17 probably_damaging(0.999) TCGA-HT-7469-01 11 124294595 124294595 G A OR8B4 Missense_Mutation p.P58L 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HT-7469-01 12 81110845 81110845 G A MYF5 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-HT-7469-01 13 61986933 61986933 G A PCDH20 Silent p.N433N 0.19 TCGA-HT-7469-01 14 105421333 105421333 G A AHNAK2 Silent p.S204S 0.09 TCGA-HT-7469-01 14 23862627 23862627 T C MYH6 Missense_Mutation p.D1010G 0.50 deleterious(0.04) probably_damaging(0.999) TCGA-HT-7469-01 14 50089217 50089220 CTAA - MGAT2 Frame_Shift_Del p.T412Sfs*8 0.41 TCGA-HT-7469-01 15 71300791 71300791 G A LRRC49 Missense_Mutation p.G420R 0.04 deleterious(0) probably_damaging(0.998) TCGA-HT-7469-01 16 11785796 11785796 G A TXNDC11 Missense_Mutation p.T417M 0.45 tolerated(0.23) benign(0.001) TCGA-HT-7469-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.35 deleterious(0) probably_damaging(1) TCGA-HT-7469-01 17 7579314 7579314 T G TP53 Missense_Mutation p.T125P 0.48 deleterious(0) probably_damaging(0.996) TCGA-HT-7469-01 18 21353502 21353502 C A LAMA3 Silent p.G408G 0.13 TCGA-HT-7469-01 19 17743590 17743590 C T UNC13A Splice_Site p.X1143_splice 0.18 TCGA-HT-7469-01 19 2039675 2039675 C T MKNK2 Silent p.A445A 0.05 TCGA-HT-7469-01 19 39039015 39039015 C T RYR1 Silent p.Y4079Y 0.33 TCGA-HT-7469-01 1 115401230 115401230 A G SYCP1 Silent p.K118K 0.18 TCGA-HT-7469-01 1 226252155 226252155 G A H3F3A Missense_Mutation p.G35R 0.40 deleterious_low_confidence(0.02) benign(0.013) TCGA-HT-7469-01 1 43032078 43032078 C T CCDC30 Nonsense_Mutation p.R263* 0.37 TCGA-HT-7469-01 20 1445045 1445045 G A NSFL1C Silent p.D44D 0.07 TCGA-HT-7469-01 20 36952337 36952337 C T BPI Silent p.P278P 0.36 TCGA-HT-7469-01 20 52198916 52198916 G C ZNF217 Missense_Mutation p.H150Q 0.06 deleterious(0) probably_damaging(1) TCGA-HT-7469-01 20 5905694 5905694 G A CHGB Silent p.%3D 0.47 TCGA-HT-7469-01 21 42774042 42774042 C T MX2 Silent p.L520L 0.22 TCGA-HT-7469-01 21 46624592 46624592 G A ADARB1 Missense_Mutation p.R603Q 0.38 deleterious(0) probably_damaging(0.971) TCGA-HT-7469-01 22 30886219 30886219 C T SEC14L4 Missense_Mutation p.D366N 0.23 deleterious(0.02) possibly_damaging(0.749) TCGA-HT-7469-01 22 38935415 38935415 C T DMC1 Missense_Mutation p.R166H 0.42 deleterious(0) probably_damaging(1) TCGA-HT-7469-01 2 102818122 102818122 T G IL1RL2 Missense_Mutation p.L199R 0.50 deleterious(0) probably_damaging(0.987) TCGA-HT-7469-01 2 109547447 109547447 C T EDAR Silent p.T8T 0.25 TCGA-HT-7469-01 2 192922465 192922465 G T TMEFF2 Missense_Mutation p.T159K 0.26 tolerated(0.29) possibly_damaging(0.722) TCGA-HT-7469-01 2 27530455 27530455 C T UCN Silent p.A103A 0.21 TCGA-HT-7469-01 3 151055882 151055882 G A P2RY12 Missense_Mutation p.P251L 0.08 deleterious(0) probably_damaging(1) TCGA-HT-7469-01 4 162697149 162697149 G A FSTL5 Nonsense_Mutation p.Q163* 0.35 TCGA-HT-7469-01 4 38799739 38799739 C T TLR1 Silent p.A238A 0.18 TCGA-HT-7469-01 4 55131206 55131206 C T PDGFRA Missense_Mutation p.P250L 0.29 deleterious(0) probably_damaging(1) TCGA-HT-7469-01 4 55133717 55133720 AGAG - PDGFRA Splice_Site p.X311_splice 0.18 TCGA-HT-7469-01 5 94248540 94248540 G T MCTP1 Silent p.R498R 0.22 TCGA-HT-7469-01 6 166579237 166579237 G A T Missense_Mutation p.P188L 0.18 deleterious(0) probably_damaging(0.952) TCGA-HT-7469-01 6 167729013 167729013 C T UNC93A 3'UTR 0.10 TCGA-HT-7469-01 7 107312689 107312692 AGTT - SLC26A4 Frame_Shift_Del p.V138Dfs*6 0.17 TCGA-HT-7469-01 7 75044449 75044449 T G POM121C 3'Flank 0.30 TCGA-HT-7469-01 7 75601767 75601767 G A POR Silent p.K75K 0.47 TCGA-HT-7469-01 8 21982885 21982885 C T HR Silent p.G563G 0.40 TCGA-HT-7469-01 8 57080900 57080900 G A PLAG1 5'UTR 0.16 TCGA-HT-7469-01 9 5339680 5339680 C G RLN1 Missense_Mutation p.V23L 0.05 tolerated(0.17) benign(0.099) TCGA-HT-7469-01 X 135956319 135956319 T C RBMX Silent p.G386G 0.04 TCGA-HT-7469-01 X 51150911 51150911 G A CXorf67 Missense_Mutation p.R348H 0.54 tolerated(0.25) benign(0.062) TCGA-HT-7469-01 X 76939510 76939511 AA - ATRX Frame_Shift_Del p.L413Kfs*20 0.51 TCGA-HT-7470-01 10 16990512 16990512 C G CUBN Missense_Mutation p.G1725A 0.18 tolerated(0.65) benign(0.008) TCGA-HT-7470-01 11 113614641 113614641 T - ZW10 Frame_Shift_Del p.N465Ifs*19 0.22 TCGA-HT-7470-01 11 113803068 113803068 C A HTR3B Silent p.T142T 0.09 TCGA-HT-7470-01 11 130750571 130750571 G A SNX19 Nonsense_Mutation p.Q902* 0.16 TCGA-HT-7470-01 11 429780 429780 G A ANO9 Silent p.F270F 0.07 TCGA-HT-7470-01 11 46893136 46893136 G A LRP4 Silent p.L1544L 0.47 TCGA-HT-7470-01 11 5878264 5878264 A C OR52E8 Nonsense_Mutation p.Y223* 0.29 TCGA-HT-7470-01 12 66221789 66221789 C T HMGA2 Silent p.T40T 0.07 TCGA-HT-7470-01 12 70954486 70954486 T C PTPRB Missense_Mutation p.D1466G 0.13 tolerated(0.13) benign(0.025) TCGA-HT-7470-01 14 106173569 106173569 G A IGHA1 Missense_Mutation p.A333V 0.14 deleterious(0.01) probably_damaging(0.928) TCGA-HT-7470-01 15 45470424 45470424 T C SHF Silent p.P128P 0.30 TCGA-HT-7470-01 15 81625071 81625071 C T TMC3 Missense_Mutation p.E998K 0.21 deleterious_low_confidence(0) benign(0.001) TCGA-HT-7470-01 16 111434 111434 G A RHBDF1 Silent p.Y448Y 0.09 TCGA-HT-7470-01 16 14031642 14031642 G A ERCC4 Missense_Mutation p.G611R 0.28 deleterious(0.01) possibly_damaging(0.675) TCGA-HT-7470-01 16 2906139 2906139 G A PRSS22 Silent p.C75C 0.14 TCGA-HT-7470-01 16 89348104 89348104 C T ANKRD11 Missense_Mutation p.G1616R 0.18 probably_damaging(1) TCGA-HT-7470-01 17 34866651 34866651 C T MYO19 Missense_Mutation p.R364Q 0.33 tolerated(0.46) benign(0.013) TCGA-HT-7470-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.70 deleterious(0) probably_damaging(0.998) TCGA-HT-7470-01 19 40357728 40357728 G A FCGBP Silent p.S5195S 0.24 TCGA-HT-7470-01 19 42804340 42804340 C G PAFAH1B3 Missense_Mutation p.E90Q 0.04 tolerated(0.13) benign(0.071) TCGA-HT-7470-01 19 55605714 55605714 T G PPP1R12C Missense_Mutation p.Q561P 0.17 deleterious(0) probably_damaging(0.986) TCGA-HT-7470-01 1 100346642 100346642 C T AGL Missense_Mutation p.A637V 0.19 tolerated(1) benign(0) TCGA-HT-7470-01 1 111726868 111726868 C T CEPT1 Missense_Mutation p.A396V 0.05 deleterious(0) probably_damaging(0.943) TCGA-HT-7470-01 1 152080904 152080904 A T TCHH Missense_Mutation p.F1597I 0.34 unknown(0) TCGA-HT-7470-01 1 196642210 196642210 C A CFH Missense_Mutation p.P54H 0.07 deleterious(0) probably_damaging(1) TCGA-HT-7470-01 1 231364922 231364922 C T C1orf131 Missense_Mutation p.D162N 0.06 tolerated(0.27) benign(0.013) TCGA-HT-7470-01 1 237872820 237872820 C T RYR2 Missense_Mutation p.L3395F 0.43 probably_damaging(0.999) TCGA-HT-7470-01 20 2592978 2592978 G C TMC2 Missense_Mutation p.V579L 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-HT-7470-01 22 29838117 29838117 C T RFPL1 3'UTR 0.17 TCGA-HT-7470-01 2 209113113 209113113 G T IDH1 Missense_Mutation p.R132S 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HT-7470-01 2 234905020 234905020 A G TRPM8 Missense_Mutation p.Q997R 0.10 deleterious(0) possibly_damaging(0.5) TCGA-HT-7470-01 2 71590305 71590305 A C ZNF638 Missense_Mutation p.I468L 0.34 tolerated(0.24) possibly_damaging(0.886) TCGA-HT-7470-01 2 76975874 76975874 T C LRRTM4 Missense_Mutation p.T574A 0.23 deleterious_low_confidence(0) benign(0.265) TCGA-HT-7470-01 3 100489774 100489774 T C ABI3BP Silent p.Q807Q 0.13 TCGA-HT-7470-01 3 154146852 154146852 C T GPR149 Missense_Mutation p.D185N 0.14 deleterious(0.04) probably_damaging(0.976) TCGA-HT-7470-01 3 19575424 19575424 G T KCNH8 Missense_Mutation p.G1053C 0.09 deleterious_low_confidence(0) possibly_damaging(0.806) TCGA-HT-7470-01 4 184628079 184628079 T G TRAPPC11 Missense_Mutation p.S1059A 0.10 tolerated(0.68) possibly_damaging(0.893) TCGA-HT-7470-01 4 70866654 70866654 A G STATH Silent p.Q59Q 0.23 TCGA-HT-7470-01 5 136324179 136324179 G A SPOCK1 Missense_Mutation p.S287L 0.25 deleterious(0) probably_damaging(0.999) TCGA-HT-7470-01 5 150483167 150483167 A CGG ANXA6 Frame_Shift_Ins p.E643Rfs*21 0.14 TCGA-HT-7470-01 5 158621725 158621725 T C RNF145 Missense_Mutation p.R128G 0.30 tolerated(0.08) benign(0.049) TCGA-HT-7470-01 5 175533580 175533580 C A FAM153B Silent p.A206A 0.09 TCGA-HT-7470-01 5 35910530 35910530 G A CAPSL Missense_Mutation p.R85W 0.16 deleterious(0.01) possibly_damaging(0.567) TCGA-HT-7470-01 6 106555167 106555167 G A PRDM1 Missense_Mutation p.V762M 0.30 tolerated(0.72) benign(0.004) TCGA-HT-7470-01 6 109770958 109770958 T C MICAL1 Missense_Mutation p.T446A 0.10 deleterious(0) probably_damaging(0.932) TCGA-HT-7470-01 6 158850782 158850782 G A TULP4 Silent p.T132T 0.03 TCGA-HT-7470-01 6 70877920 70877920 A G COL19A1 Missense_Mutation p.I817V 0.13 tolerated(1) benign(0.005) TCGA-HT-7470-01 6 83839856 83839856 C T DOPEY1 Nonsense_Mutation p.Q786* 0.29 TCGA-HT-7470-01 9 139411837 139411837 C A NOTCH1 Missense_Mutation p.G481V 0.29 deleterious(0) probably_damaging(0.999) TCGA-HT-7470-01 9 79635448 79635448 C T FOXB2 Missense_Mutation p.S293F 0.23 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-HT-7470-01 X 49958837 49958837 C T AKAP4 Missense_Mutation p.R176H 0.45 tolerated(1) benign(0.001) TCGA-HT-7470-01 X 76874329 76874330 - T ATRX Frame_Shift_Ins p.R1798Kfs*12 0.40 TCGA-HT-7471-01 10 125780796 125780796 G C CHST15 Missense_Mutation p.N441K 0.43 deleterious(0.01) possibly_damaging(0.469) TCGA-HT-7471-01 10 26500833 26500833 G A MYO3A Missense_Mutation p.D1598N 0.26 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-HT-7471-01 11 66411034 66411035 - CGATAGAT RBM14-RBM4 Frame_Shift_Ins p.S155* 0.17 TCGA-HT-7471-01 12 49087565 49087565 C A CCNT1 Nonsense_Mutation p.E478* 0.35 TCGA-HT-7471-01 14 24550742 24550742 C T NRL Silent p.S139S 0.20 TCGA-HT-7471-01 15 78894483 78894483 C T CHRNA3 Silent p.P167P 0.16 TCGA-HT-7471-01 16 67683858 67683858 G A RLTPR Missense_Mutation p.R690H 0.12 deleterious(0.02) benign(0.072) TCGA-HT-7471-01 17 76130033 76130033 G A TMC8 Silent p.V256V 0.45 TCGA-HT-7471-01 18 19751533 19751533 A G GATA6 Missense_Mutation p.Q143R 0.14 tolerated_low_confidence(0.06) benign(0.101) TCGA-HT-7471-01 19 17690296 17690296 G A COLGALT1 Silent p.V424V 0.38 TCGA-HT-7471-01 19 42794411 42794411 T - CIC Frame_Shift_Del p.V498* 0.47 TCGA-HT-7471-01 19 53959188 53959188 G A ZNF761 RNA 0.95 TCGA-HT-7471-01 1 109707134 109707134 C T KIAA1324 Silent p.N96N 0.82 TCGA-HT-7471-01 1 167870912 167870912 G A ADCY10 Nonsense_Mutation p.R142* 0.47 TCGA-HT-7471-01 1 181765891 181765891 G A CACNA1E Missense_Mutation p.R2099H 0.17 deleterious(0.05) possibly_damaging(0.848) TCGA-HT-7471-01 1 78430773 78430773 C A FUBP1 Nonsense_Mutation p.E206* 0.77 TCGA-HT-7471-01 21 34924118 34924118 A G SON Missense_Mutation p.M861V 0.42 benign(0.019) TCGA-HT-7471-01 21 45876870 45876870 C T LRRC3 Silent p.L115L 0.06 TCGA-HT-7471-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7471-01 3 52552602 52552602 C T STAB1 Silent p.H1620H 0.43 TCGA-HT-7471-01 4 144474296 144474296 G A SMARCA5 Missense_Mutation p.A1040T 0.10 tolerated(1) benign(0.002) TCGA-HT-7471-01 7 2698612 2698612 A G TTYH3 Missense_Mutation p.N488S 0.43 deleterious(0.01) benign(0.196) TCGA-HT-7471-01 7 66416082 66416082 A G TMEM248 Missense_Mutation p.Y247C 0.38 deleterious(0.03) probably_damaging(0.991) TCGA-HT-7471-01 X 105281082 105281082 T G SERPINA7 5'UTR 0.57 TCGA-HT-7471-01 X 3238337 3238337 C T MXRA5 Missense_Mutation p.G1797R 0.44 tolerated(0.37) benign(0.001) TCGA-HT-7472-01 11 55861581 55861581 G A OR8I2 Silent p.S266S 0.07 TCGA-HT-7472-01 11 5602531 5602531 A G OR52B6 Missense_Mutation p.Y142C 0.39 deleterious(0) possibly_damaging(0.819) TCGA-HT-7472-01 15 79189425 79189425 A G MORF4L1 3'UTR 0.28 TCGA-HT-7472-01 16 46766546 46766546 C T MYLK3 Missense_Mutation p.G346R 0.40 tolerated(0.3) benign(0.02) TCGA-HT-7472-01 16 81927341 81927341 C T PLCG2 Silent p.S338S 0.06 TCGA-HT-7472-01 17 74001623 74001623 C T CDK3 3'UTR 0.25 TCGA-HT-7472-01 17 7577142 7577142 C T TP53 Missense_Mutation p.G266R 0.84 deleterious(0.03) probably_damaging(0.999) TCGA-HT-7472-01 17 78117984 78117984 C G EIF4A3 Missense_Mutation p.D77H 0.07 deleterious(0) probably_damaging(0.995) TCGA-HT-7472-01 1 150531779 150531779 G A ADAMTSL4 Missense_Mutation p.G927D 0.11 deleterious(0) probably_damaging(1) TCGA-HT-7472-01 1 181754902 181754902 C A CACNA1E Silent p.I1911I 0.04 TCGA-HT-7472-01 1 213414640 213414640 T C RPS6KC1 Silent p.D607D 0.24 TCGA-HT-7472-01 20 46267764 46267764 C G NCOA3 Nonsense_Mutation p.S842* 0.39 TCGA-HT-7472-01 22 41936719 41936719 G A POLR3H Silent p.G64G 0.31 TCGA-HT-7472-01 2 100938027 100938027 G A LONRF2 Missense_Mutation p.R177W 0.17 tolerated(0.18) possibly_damaging(0.824) TCGA-HT-7472-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7472-01 3 108216948 108216948 A G MYH15 Missense_Mutation p.I210T 0.37 deleterious(0) probably_damaging(0.998) TCGA-HT-7472-01 3 13860812 13860812 C T WNT7A Missense_Mutation p.V227M 0.18 tolerated(0.25) benign(0.01) TCGA-HT-7472-01 3 168864363 168864363 G A MECOM 5'Flank 0.40 TCGA-HT-7472-01 3 31725264 31725264 C T OSBPL10 Missense_Mutation p.A530T 0.08 deleterious(0) probably_damaging(1) TCGA-HT-7472-01 3 50609550 50609550 C T HEMK1 Missense_Mutation p.P109S 0.13 deleterious(0) probably_damaging(1) TCGA-HT-7472-01 4 17616285 17616285 C T MED28 Missense_Mutation p.A3V 0.39 tolerated_low_confidence(0.19) benign(0.001) TCGA-HT-7472-01 5 68710199 68710199 C A RAD17 3'UTR 0.41 TCGA-HT-7472-01 6 6145947 6145947 C T F13A1 Missense_Mutation p.G702R 0.18 deleterious(0) probably_damaging(1) TCGA-HT-7472-01 7 131113796 131113799 TGTT - MKLN1 Frame_Shift_Del p.V285Ifs*20 0.30 TCGA-HT-7472-01 8 104384811 104384811 A G CTHRC1 Intron 0.33 TCGA-HT-7472-01 8 42257212 42257212 C T VDAC3 Missense_Mutation p.P106L 0.31 deleterious(0.01) benign(0.049) TCGA-HT-7472-01 9 128124938 128124938 T C GAPVD1 Silent p.A1459A 0.35 TCGA-HT-7472-01 9 129854133 129854133 C G ANGPTL2 Silent p.L366L 0.32 TCGA-HT-7472-01 X 39934221 39934221 C G BCOR Silent p.P126P 0.58 TCGA-HT-7472-01 X 76937477 76937480 TCTC - ATRX Frame_Shift_Del p.E1090Rfs*27 0.69 TCGA-HT-7473-01 10 124390734 124390734 C T DMBT1 Missense_Mutation p.R1966W 0.47 tolerated(0.05) probably_damaging(0.993) TCGA-HT-7473-01 11 108381471 108381471 C A EXPH5 Missense_Mutation p.R1588I 0.30 deleterious(0) probably_damaging(0.914) TCGA-HT-7473-01 11 281637 281637 C T NLRP6 Missense_Mutation p.R635C 0.27 tolerated(0.13) benign(0.003) TCGA-HT-7473-01 12 122685392 122685392 C A LRRC43 Missense_Mutation p.P574T 0.40 tolerated(0.36) possibly_damaging(0.883) TCGA-HT-7473-01 15 25436435 25436435 C G SNORD115-11 3'Flank 0.08 TCGA-HT-7473-01 17 3999148 3999148 C A ZZEF1 Missense_Mutation p.E630D 0.08 tolerated(0.51) benign(0.029) TCGA-HT-7473-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.77 deleterious(0) probably_damaging(0.998) TCGA-HT-7473-01 18 30349853 30349853 C T KLHL14 Silent p.S234S 0.39 TCGA-HT-7473-01 19 13888924 13888924 G A C19orf53 Missense_Mutation p.S71N 0.05 tolerated(0.12) unknown(0) TCGA-HT-7473-01 19 13888925 13888925 C A C19orf53 Missense_Mutation p.S71R 0.05 deleterious(0) unknown(0) TCGA-HT-7473-01 19 15752394 15752394 C T CYP4F3 Missense_Mutation p.R57W 0.09 deleterious(0.05) benign(0.052) TCGA-HT-7473-01 19 54705009 54705009 A G RPS9 Intron 0.27 TCGA-HT-7473-01 1 237753198 237753198 G T RYR2 Missense_Mutation p.G1235V 0.11 benign(0.033) TCGA-HT-7473-01 2 170665016 170665016 T A SSB Missense_Mutation p.N193K 0.17 tolerated(0.61) benign(0.06) TCGA-HT-7473-01 2 206921218 206921218 G A INO80D Missense_Mutation p.A223V 0.29 tolerated(0.31) benign(0.035) TCGA-HT-7473-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7473-01 3 14548311 14548311 G A GRIP2 Intron 0.19 TCGA-HT-7473-01 6 85448225 85448225 A T TBX18 Silent p.I363I 0.35 TCGA-HT-7473-01 7 100201500 100201500 C T PCOLCE Intron 0.33 TCGA-HT-7473-01 7 2696109 2696109 C G TTYH3 Silent p.V397V 0.10 TCGA-HT-7473-01 7 93072938 93072938 C G CALCR Silent p.R294R 0.29 TCGA-HT-7473-01 9 84608693 84608693 A G SPATA31D1 Missense_Mutation p.K1103R 0.25 tolerated(0.65) benign(0.006) TCGA-HT-7473-01 X 76938452 76938453 - T ATRX Frame_Shift_Ins p.D766Rfs*10 0.39 TCGA-HT-7474-01 10 134521843 134521843 C A INPP5A Silent p.I167I 0.18 TCGA-HT-7474-01 11 116719848 116719848 G A SIK3 Silent p.S1163S 0.10 TCGA-HT-7474-01 14 23652141 23652141 C T SLC7A8 5'UTR 0.30 TCGA-HT-7474-01 15 28903832 28903832 G A HERC2P9 RNA 0.33 TCGA-HT-7474-01 15 34042447 34042447 C A RYR3 Missense_Mutation p.L2787M 0.15 probably_damaging(0.986) TCGA-HT-7474-01 15 39910298 39910305 CTGGAAAG - FSIP1 Frame_Shift_Del p.L444Vfs*5 0.26 TCGA-HT-7474-01 16 68398674 68398674 T C SMPD3 Missense_Mutation p.N512S 0.11 deleterious(0) probably_damaging(0.999) TCGA-HT-7474-01 16 837118 837118 G A RPUSD1 Missense_Mutation p.T123M 0.26 tolerated(0.08) benign(0.418) TCGA-HT-7474-01 17 18220403 18220403 G A SMCR8 Missense_Mutation p.G434R 0.04 tolerated(0.15) benign(0.005) TCGA-HT-7474-01 17 7577138 7577138 C G TP53 Missense_Mutation p.R267P 0.76 deleterious(0) probably_damaging(0.997) TCGA-HT-7474-01 1 175048764 175048764 C T TNN Silent p.G235G 0.52 TCGA-HT-7474-01 1 44490017 44490017 G - SLC6A9 5'UTR 0.33 TCGA-HT-7474-01 20 25436318 25436318 C T NINL Silent p.L1316L 0.28 TCGA-HT-7474-01 20 25436402 25436402 C T NINL Silent p.L1288L 0.24 TCGA-HT-7474-01 2 170667377 170667377 C T SSB Silent p.L274L 0.31 TCGA-HT-7474-01 2 179569078 179569078 T C TTN Missense_Mutation p.T10007A 0.13 TCGA-HT-7474-01 2 179641669 179641669 G T TTN Missense_Mutation p.T1641K 0.12 TCGA-HT-7474-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7474-01 2 242039161 242039161 C T MTERFD2 Missense_Mutation p.C57Y 0.13 tolerated(1) benign(0.005) TCGA-HT-7474-01 4 47427857 47427857 G A GABRB1 Missense_Mutation p.R416H 0.25 tolerated(0.26) benign(0.077) TCGA-HT-7474-01 4 80327819 80327819 A G GK2 Silent p.G512G 0.26 TCGA-HT-7474-01 5 131329917 131329917 A G ACSL6 Missense_Mutation p.M26T 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-HT-7474-01 6 117593660 117593660 T C VGLL2 3'UTR 0.07 TCGA-HT-7474-01 6 29080500 29080500 C T OR2J3 Missense_Mutation p.A278V 0.06 deleterious(0) possibly_damaging(0.89) TCGA-HT-7474-01 6 32188188 32188188 G A NOTCH4 Missense_Mutation p.R385C 0.05 deleterious(0.04) possibly_damaging(0.88) TCGA-HT-7474-01 7 122635637 122635637 A G TAS2R16 Missense_Mutation p.S18P 0.23 deleterious(0) probably_damaging(0.97) TCGA-HT-7474-01 7 49977166 49977166 T C ZPBP Silent p.Q338Q 0.30 TCGA-HT-7474-01 7 57188855 57188855 C T ZNF479 Silent p.T89T 0.09 TCGA-HT-7474-01 8 37698983 37698983 C A GPR124 Missense_Mutation p.R1043S 0.14 tolerated(0.44) benign(0.177) TCGA-HT-7474-01 9 119139910 119139910 G C PAPPA Missense_Mutation p.C1554S 0.33 deleterious(0) benign(0.415) TCGA-HT-7474-01 9 138588581 138588581 C T SOHLH1 Missense_Mutation p.V180M 0.07 tolerated(0.26) benign(0.001) TCGA-HT-7474-01 X 102962436 102962436 C A GLRA4 Missense_Mutation p.D364Y 0.09 deleterious(0.02) possibly_damaging(0.797) TCGA-HT-7474-01 X 12906637 12906645 CGGAAAAGG - TLR7 In_Frame_Del p.R1004_R1006del 0.47 TCGA-HT-7474-01 X 76855981 76855982 - A ATRX Frame_Shift_Ins p.Q1874Pfs*8 0.37 TCGA-HT-7475-01 10 103826085 103826085 T G HPS6 Missense_Mutation p.F285C 0.34 tolerated(0.18) benign(0.004) TCGA-HT-7475-01 10 76803657 76803657 G A DUPD1 Nonsense_Mutation p.Q107* 0.40 TCGA-HT-7475-01 11 45959824 45959824 T C PHF21A Missense_Mutation p.S497G 0.43 tolerated(0.64) benign(0.282) TCGA-HT-7475-01 11 56237959 56237959 G A OR5M3 Silent p.T5T 0.34 TCGA-HT-7475-01 11 59224535 59224535 G T OR4D6 Silent p.V34V 0.06 TCGA-HT-7475-01 11 77916930 77916930 G A USP35 Missense_Mutation p.G414R 0.44 tolerated(0.11) unknown(0) TCGA-HT-7475-01 12 49446390 49446390 T C KMT2D Silent p.Q405Q 0.52 TCGA-HT-7475-01 12 57547993 57547993 G A LRP1 Missense_Mutation p.V282M 0.05 benign(0.047) TCGA-HT-7475-01 12 6438610 6438610 C T TNFRSF1A Silent p.P412P 0.42 TCGA-HT-7475-01 12 6760356 6760356 C T ING4 3'UTR 0.48 TCGA-HT-7475-01 14 105409595 105409595 C T AHNAK2 Missense_Mutation p.D4065N 0.33 probably_damaging(0.997) TCGA-HT-7475-01 14 22564370 22564370 A G TRDV1 Missense_Mutation p.Y15C 0.36 tolerated(0.49) benign(0.001) TCGA-HT-7475-01 14 70442501 70442502 TC - SMOC1 Frame_Shift_Del p.S150Cfs*4 0.23 TCGA-HT-7475-01 16 23382718 23382718 C T SCNN1B Missense_Mutation p.P327S 0.28 deleterious(0) probably_damaging(1) TCGA-HT-7475-01 17 40869993 40869993 C A EZH1 Splice_Site p.X341_splice 0.42 TCGA-HT-7475-01 17 56357985 56357985 G A MPO Silent p.P45P 0.30 TCGA-HT-7475-01 17 72518906 72518906 C T CD300LB Missense_Mutation p.E230K 0.40 tolerated(0.22) benign(0.001) TCGA-HT-7475-01 17 7477923 7477923 C - EIF4A1 Frame_Shift_Del p.R45Vfs*28 0.25 TCGA-HT-7475-01 17 7578226 7578226 T C TP53 Missense_Mutation p.D208G 0.33 deleterious(0.04) probably_damaging(1) TCGA-HT-7475-01 17 7579358 7579358 C G TP53 Missense_Mutation p.R110P 0.33 deleterious(0.03) probably_damaging(0.982) TCGA-HT-7475-01 18 28911710 28911710 C A DSG1 Missense_Mutation p.N188K 0.34 deleterious(0) probably_damaging(0.948) TCGA-HT-7475-01 18 31709958 31709958 T C NOL4 Silent p.L97L 0.40 TCGA-HT-7475-01 18 7949178 7949178 G A PTPRM Splice_Site p.X222_splice 0.42 TCGA-HT-7475-01 19 18272833 18272833 C T PIK3R2 Silent p.H291H 0.44 TCGA-HT-7475-01 19 19905656 19905656 C T ZNF506 Missense_Mutation p.G347D 0.05 deleterious(0.03) possibly_damaging(0.551) TCGA-HT-7475-01 19 36216441 36216441 G A KMT2B Missense_Mutation p.R1235Q 0.36 benign(0.441) TCGA-HT-7475-01 19 37203719 37203719 T G ZNF567 Missense_Mutation p.L27W 0.35 deleterious(0) probably_damaging(0.997) TCGA-HT-7475-01 19 53269430 53269430 T C ZNF600 Missense_Mutation p.K527E 0.09 deleterious(0) probably_damaging(0.991) TCGA-HT-7475-01 1 111494470 111494470 G A LRIF1 Nonsense_Mutation p.R346* 0.39 TCGA-HT-7475-01 1 1421533 1421533 G A ATAD3B Missense_Mutation p.R336K 0.32 tolerated(0.51) benign(0.019) TCGA-HT-7475-01 1 152671730 152671730 T C LCE2A 3'UTR 0.57 TCGA-HT-7475-01 1 155171749 155171780 ACAGTGTTGGTGCAGATGGAGTTTGGGTCACA - THBS3 Frame_Shift_Del p.C382Gfs*43 0.12 TCGA-HT-7475-01 1 158298711 158298711 C T CD1B Missense_Mutation p.R327Q 0.20 tolerated(0.42) benign(0.075) TCGA-HT-7475-01 1 162557442 162557442 C T UAP1 Silent p.L338L 0.26 TCGA-HT-7475-01 1 24727850 24727850 C T STPG1 Missense_Mutation p.R10H 0.42 tolerated_low_confidence(0.55) benign(0) TCGA-HT-7475-01 20 15843442 15843442 A T MACROD2 Missense_Mutation p.K233I 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-HT-7475-01 21 10970032 10970032 G A TPTE Silent p.T32T 0.19 TCGA-HT-7475-01 22 17684592 17684592 G A CECR1 Missense_Mutation p.S205L 0.37 tolerated(0.21) benign(0.086) TCGA-HT-7475-01 2 102956649 102956649 G A IL1RL1 Missense_Mutation p.V122I 0.41 tolerated(0.46) benign(0.027) TCGA-HT-7475-01 2 108921155 108921156 AG T SULT1C2 Frame_Shift_Del p.K178Nfs*11 0.24 TCGA-HT-7475-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7475-01 2 209308141 209308141 G A PTH2R Missense_Mutation p.S193N 0.39 deleterious(0.01) probably_damaging(1) TCGA-HT-7475-01 4 187178500 187178500 G A KLKB1 Missense_Mutation p.G569E 0.05 deleterious(0) probably_damaging(1) TCGA-HT-7475-01 4 189012500 189012500 G A TRIML2 3'UTR 0.38 TCGA-HT-7475-01 4 71201800 71201800 T C CABS1 Silent p.N348N 0.34 TCGA-HT-7475-01 4 77018801 77018801 A G ART3 Silent p.L262L 0.27 TCGA-HT-7475-01 4 79793907 79793907 C T BMP2K Missense_Mutation p.P583L 0.41 deleterious_low_confidence(0) unknown(0) TCGA-HT-7475-01 5 112203073 112203073 T C SRP19 Intron 0.50 TCGA-HT-7475-01 5 158140057 158140057 G A EBF1 Silent p.H430H 0.49 TCGA-HT-7475-01 5 17354125 17354125 G A CTD-2139B15.2 Intron 0.55 TCGA-HT-7475-01 5 178392212 178392221 GAAGCCTTTT - ZNF454 Frame_Shift_Del p.K270Nfs*95 0.34 TCGA-HT-7475-01 6 31902169 31902169 C A C2 Intron 0.34 TCGA-HT-7475-01 6 31911098 31911098 T C CFB Splice_Site p.X332_splice 0.46 TCGA-HT-7475-01 6 35423550 35423550 G A FANCE Missense_Mutation p.R92Q 0.54 tolerated(0.38) benign(0) TCGA-HT-7475-01 7 106508596 106508596 C T PIK3CG Missense_Mutation p.A197V 0.11 tolerated(0.06) benign(0.19) TCGA-HT-7475-01 7 106938740 106938740 C T COG5 Missense_Mutation p.R418H 0.73 deleterious(0.02) benign(0.21) TCGA-HT-7475-01 7 142250978 142250978 G A TRBV6-4 Silent p.I23I 0.14 TCGA-HT-7475-01 7 91736724 91736724 C T AKAP9 Missense_Mutation p.P3845L 0.73 benign(0.147) TCGA-HT-7475-01 8 110493686 110493686 G A PKHD1L1 Missense_Mutation p.E3118K 0.68 deleterious(0.01) probably_damaging(0.95) TCGA-HT-7475-01 8 139791795 139791795 C T COL22A1 Missense_Mutation p.G554E 0.24 unknown(0) TCGA-HT-7475-01 8 16850596 16850596 T C FGF20 Silent p.L207L 0.37 TCGA-HT-7475-01 8 21986715 21986715 G T HR 5'UTR 0.38 TCGA-HT-7475-01 8 29923548 29923548 T C TMEM66 Missense_Mutation p.Y317C 0.06 tolerated(0.11) benign(0.012) TCGA-HT-7475-01 8 40532420 40532420 C T ZMAT4 Missense_Mutation p.R127Q 0.35 tolerated(0.57) benign(0.034) TCGA-HT-7475-01 X 76813076 76813076 T C ATRX Missense_Mutation p.K2182R 0.87 probably_damaging(0.999) TCGA-HT-7476-01 11 101857730 101857730 A G KIAA1377 Missense_Mutation p.K1068E 0.36 deleterious(0) probably_damaging(0.939) TCGA-HT-7476-01 14 101492098 101492098 G A MIR323A RNA 0.40 TCGA-HT-7476-01 14 42356999 42356999 G C LRFN5 Missense_Mutation p.D391H 0.15 deleterious(0) probably_damaging(0.96) TCGA-HT-7476-01 15 76866498 76866498 C T SCAPER Splice_Site p.X946_splice 0.29 TCGA-HT-7476-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-HT-7476-01 15 91491977 91491977 G C UNC45A Missense_Mutation p.E611Q 0.21 tolerated(0.56) benign(0.083) TCGA-HT-7476-01 17 10440777 10440777 T C MYH2 Missense_Mutation p.D557G 0.08 deleterious(0) possibly_damaging(0.582) TCGA-HT-7476-01 17 16342838 16342838 A G TRPV2 3'Flank 0.28 TCGA-HT-7476-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.62 deleterious(0) probably_damaging(0.998) TCGA-HT-7476-01 18 33739707 33739707 C T ELP2 Missense_Mutation p.A580V 0.07 tolerated(0.36) benign(0.005) TCGA-HT-7476-01 20 14307457 14307457 C T FLRT3 Silent p.L232L 0.27 TCGA-HT-7476-01 21 10973723 10973723 C G TPTE Missense_Mutation p.S4T 0.14 deleterious_low_confidence(0.04) benign(0.01) TCGA-HT-7476-01 21 45928792 45928792 C T TSPEAR Intron 0.36 TCGA-HT-7476-01 3 113172505 113172505 C G SPICE1 Silent p.L650L 0.30 TCGA-HT-7476-01 3 52848085 52848085 G A ITIH4 Nonsense_Mutation p.Q877* 0.37 TCGA-HT-7476-01 4 122853715 122853715 T A TRPC3 Missense_Mutation p.D233V 0.38 deleterious(0) probably_damaging(0.999) TCGA-HT-7476-01 4 126239920 126239920 A G FAT4 Missense_Mutation p.D785G 0.11 probably_damaging(0.989) TCGA-HT-7476-01 4 57193877 57193877 G A KIAA1211 Silent p.P1203P 0.33 TCGA-HT-7476-01 5 77473214 77473214 G C AP3B1 Missense_Mutation p.S330C 0.34 deleterious(0) benign(0.143) TCGA-HT-7476-01 6 110533393 110533393 G T CDC40 Missense_Mutation p.G262V 0.06 deleterious(0) probably_damaging(0.95) TCGA-HT-7476-01 7 123594310 123594310 A T SPAM1 Missense_Mutation p.Y229F 0.32 tolerated(0.21) benign(0.123) TCGA-HT-7476-01 7 95657551 95657551 C T DYNC1I1 Missense_Mutation p.S362L 0.34 deleterious(0) probably_damaging(0.992) TCGA-HT-7476-01 8 75274211 75274211 A G GDAP1 Missense_Mutation p.K193E 0.19 tolerated(0.48) probably_damaging(0.996) TCGA-HT-7476-01 9 113547910 113547910 A G MUSK Missense_Mutation p.K564E 0.36 deleterious(0) probably_damaging(0.995) TCGA-HT-7476-01 X 69264233 69264233 C T AWAT2 Nonsense_Mutation p.W55* 0.21 TCGA-HT-7476-01 X 76939347 76939348 TT - ATRX Frame_Shift_Del p.K467Tfs*4 0.43 TCGA-HT-7476-01 X 77155051 77155051 A T COX7B Translation_Start_Site p.M1? 0.71 deleterious(0.03) benign(0.422) TCGA-HT-7476-01 X 99662028 99662028 T C PCDH19 Missense_Mutation p.H523R 0.60 deleterious(0.02) probably_damaging(0.968) TCGA-HT-7477-01 10 81901857 81901857 T A PLAC9 Silent p.P28P 0.14 TCGA-HT-7477-01 11 4661741 4661741 C A OR51D1 Missense_Mutation p.L241M 0.32 deleterious(0.01) probably_damaging(1) TCGA-HT-7477-01 11 55419308 55419308 G T OR4S2 Missense_Mutation p.G310V 0.41 tolerated_low_confidence(0.1) benign(0.036) TCGA-HT-7477-01 11 92624025 92624025 G T FAT3 Missense_Mutation p.V4506L 0.38 benign(0.008) TCGA-HT-7477-01 12 49359855 49359855 C T WNT10B 3'UTR 0.13 TCGA-HT-7477-01 13 113181323 113181323 A C TUBGCP3 Silent p.V496V 0.18 TCGA-HT-7477-01 14 101423566 101423566 G A SNORD114-6 RNA 0.13 TCGA-HT-7477-01 14 55643912 55643912 G A DLGAP5 Missense_Mutation p.S306F 0.61 deleterious(0) probably_damaging(1) TCGA-HT-7477-01 15 34040420 34040420 C T RYR3 Missense_Mutation p.R2699W 0.05 possibly_damaging(0.727) TCGA-HT-7477-01 16 71423889 71423889 G A CALB2 3'UTR 0.53 TCGA-HT-7477-01 17 18022907 18022907 G A MYO15A Missense_Mutation p.G265S 0.39 possibly_damaging(0.557) TCGA-HT-7477-01 17 56060673 56060673 C G VEZF1 Missense_Mutation p.D39H 0.46 deleterious(0) probably_damaging(0.997) TCGA-HT-7477-01 17 72301394 72301394 G A DNAI2 Missense_Mutation p.V342I 0.09 tolerated(0.49) benign(0.013) TCGA-HT-7477-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.89 deleterious(0) probably_damaging(1) TCGA-HT-7477-01 19 14517251 14517251 G A CD97 Missense_Mutation p.V644M 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-HT-7477-01 19 33183087 33183087 C T NUDT19 Missense_Mutation p.A74V 0.21 deleterious(0.02) possibly_damaging(0.536) TCGA-HT-7477-01 1 157514077 157514077 G T FCRL5 Missense_Mutation p.S273R 0.47 deleterious(0) probably_damaging(0.997) TCGA-HT-7477-01 1 17264170 17264170 G C CROCC Missense_Mutation p.E410Q 0.14 benign(0) TCGA-HT-7477-01 1 186643728 186643728 A G PTGS2 Silent p.V524V 0.16 TCGA-HT-7477-01 1 201352455 201352455 G A LAD1 Missense_Mutation p.T413M 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-HT-7477-01 1 230823843 230823843 G A COG2 Silent p.K535K 0.24 TCGA-HT-7477-01 1 237804274 237804274 T C RYR2 Missense_Mutation p.L2398P 0.55 probably_damaging(0.996) TCGA-HT-7477-01 20 48523042 48523042 G A SPATA2 Missense_Mutation p.S226L 0.25 deleterious(0.01) benign(0.108) TCGA-HT-7477-01 21 39672395 39672395 G A KCNJ15 3'UTR 0.20 TCGA-HT-7477-01 22 43606074 43606074 G A SCUBE1 Silent p.G852G 0.76 TCGA-HT-7477-01 2 105858985 105858985 A G GPR45 Missense_Mutation p.K224E 0.25 deleterious(0.03) benign(0.069) TCGA-HT-7477-01 2 131981311 131981311 G A POTEE Intron 0.14 TCGA-HT-7477-01 2 179588855 179588855 G A TTN Missense_Mutation p.P7044L 0.62 TCGA-HT-7477-01 2 196749379 196749379 G A DNAH7 Missense_Mutation p.T1898I 0.25 tolerated(0.14) benign(0) TCGA-HT-7477-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7477-01 2 241468460 241468460 T G ANKMY1 Missense_Mutation p.K227T 0.18 deleterious(0) possibly_damaging(0.511) TCGA-HT-7477-01 2 63283474 63283474 G C OTX1 3'UTR 0.41 TCGA-HT-7477-01 2 90060991 90060991 T C IGKV6D-21 Missense_Mutation p.L113S 0.35 tolerated(0.49) benign(0.014) TCGA-HT-7477-01 3 151056104 151056104 A T P2RY12 Missense_Mutation p.F177Y 0.28 tolerated(0.21) benign(0.259) TCGA-HT-7477-01 3 47038035 47038035 T C NBEAL2 Missense_Mutation p.F809S 0.32 deleterious(0) probably_damaging(0.995) TCGA-HT-7477-01 4 113475127 113475127 C A C4orf21 Missense_Mutation p.G1737V 0.10 deleterious(0) probably_damaging(0.992) TCGA-HT-7477-01 4 123664898 123664898 A G BBS12 Silent p.T617T 0.25 TCGA-HT-7477-01 4 189018488 189018488 A G TRIML2 Missense_Mutation p.S162P 0.41 tolerated(0.19) benign(0.252) TCGA-HT-7477-01 4 3318009 3318009 G A RGS12 Missense_Mutation p.G38R 0.10 deleterious(0) probably_damaging(1) TCGA-HT-7477-01 4 48536663 48536663 G A FRYL Silent p.L2202L 0.69 TCGA-HT-7477-01 4 57340270 57340270 C T SRP72 Silent p.L135L 0.04 TCGA-HT-7477-01 5 149357883 149357883 G A SLC26A2 Missense_Mutation p.S223N 0.55 deleterious(0.02) benign(0.187) TCGA-HT-7477-01 5 26881636 26881636 T C CDH9 Missense_Mutation p.N660S 0.23 deleterious(0) probably_damaging(0.992) TCGA-HT-7477-01 5 38338820 38338820 C T EGFLAM Silent p.G76G 0.49 TCGA-HT-7477-01 6 49754106 49754106 G A PGK2 Silent p.I265I 0.15 TCGA-HT-7477-01 6 72967911 72967911 C T RIMS1 Missense_Mutation p.R952C 0.39 deleterious(0) probably_damaging(0.998) TCGA-HT-7477-01 6 80720598 80720598 G A TTK Missense_Mutation p.M179I 0.33 tolerated(0.19) benign(0.008) TCGA-HT-7477-01 7 100465834 100465834 G A TRIP6 Silent p.A114A 0.33 TCGA-HT-7477-01 7 127668930 127668930 G C LRRC4 Silent p.S588S 0.48 TCGA-HT-7477-01 7 2963945 2963945 G A CARD11 Missense_Mutation p.S621F 0.31 deleterious(0) probably_damaging(0.95) TCGA-HT-7477-01 7 44097451 44097451 A G DBNL Missense_Mutation p.K182R 0.37 tolerated(0.07) possibly_damaging(0.543) TCGA-HT-7477-01 8 105459580 105459580 T A DPYS Missense_Mutation p.H192L 0.05 deleterious(0) probably_damaging(1) TCGA-HT-7477-01 8 18729531 18729531 T A PSD3 Silent p.P281P 0.17 TCGA-HT-7477-01 8 33246920 33246920 T C FUT10 Missense_Mutation p.N258S 0.44 tolerated(0.19) benign(0.053) TCGA-HT-7477-01 8 39624672 39624672 T C ADAM2 Silent p.L437L 0.47 TCGA-HT-7477-01 9 130569293 130569293 A G FPGS Missense_Mutation p.N143S 0.22 deleterious(0.02) possibly_damaging(0.668) TCGA-HT-7477-01 9 131503855 131503855 G A ZER1 Missense_Mutation p.L566F 0.17 deleterious(0) probably_damaging(0.99) TCGA-HT-7477-01 9 99296298 99296298 G A CDC14B Missense_Mutation p.A286V 0.08 tolerated(1) benign(0.006) TCGA-HT-7477-01 X 127185376 127185376 G T ACTRT1 Silent p.I270I 0.64 TCGA-HT-7477-01 X 76940500 76940500 T G ATRX Splice_Site p.X199_splice 0.90 TCGA-HT-7478-01 10 26241102 26241102 G C MYO3A Missense_Mutation p.W21C 0.24 deleterious(0) probably_damaging(0.996) TCGA-HT-7478-01 11 56020656 56020656 A - OR5T3 Frame_Shift_Del p.K329Rfs*3 0.20 TCGA-HT-7478-01 11 88911234 88911234 C T TYR Missense_Mutation p.P38L 0.33 tolerated(0.47) benign(0.002) TCGA-HT-7478-01 12 3129912 3129912 C T TEAD4 Silent p.F232F 0.30 TCGA-HT-7478-01 14 65417123 65417123 C G RAB15 Missense_Mutation p.Q155H 0.12 deleterious(0.01) benign(0.227) TCGA-HT-7478-01 15 54306802 54306802 C T UNC13C Nonsense_Mutation p.Q568* 0.26 TCGA-HT-7478-01 16 56388962 56388962 C G RP11-441F2.5 5'Flank 0.26 TCGA-HT-7478-01 17 42987529 42987529 T C GFAP 3'Flank 0.24 TCGA-HT-7478-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.58 tolerated(0.13) possibly_damaging(0.631) TCGA-HT-7478-01 18 29787227 29787227 A G MEP1B Missense_Mutation p.N187S 0.18 deleterious(0) probably_damaging(0.991) TCGA-HT-7478-01 18 77794645 77794645 G C RBFA Silent p.S50S 0.26 TCGA-HT-7478-01 19 10202008 10202008 C T C19orf66 Missense_Mutation p.P156L 0.29 tolerated(0.41) possibly_damaging(0.519) TCGA-HT-7478-01 19 19456112 19456112 G A MAU2 Splice_Site p.X386_splice 0.33 TCGA-HT-7478-01 19 4318904 4318904 G A FSD1 Missense_Mutation p.R332H 0.38 deleterious(0) probably_damaging(0.965) TCGA-HT-7478-01 19 56321528 56321528 A G NLRP11 Missense_Mutation p.F150L 0.25 tolerated(0.23) probably_damaging(0.976) TCGA-HT-7478-01 19 56736304 56736304 C T ZSCAN5A Missense_Mutation p.V38M 0.15 tolerated(0.22) benign(0.005) TCGA-HT-7478-01 1 11184641 11184641 C T MTOR Silent p.L2192L 0.20 TCGA-HT-7478-01 1 186946833 186946833 C G PLA2G4A Missense_Mutation p.P625A 0.26 deleterious(0.03) probably_damaging(0.95) TCGA-HT-7478-01 1 20305349 20305349 C T PLA2G2A 5'UTR 0.39 TCGA-HT-7478-01 1 2492072 2492072 G T TNFRSF14 Missense_Mutation p.S157I 0.24 tolerated(0.17) benign(0.179) TCGA-HT-7478-01 1 48771507 48771507 C G SPATA6 Missense_Mutation p.R413T 0.04 tolerated(0.24) probably_damaging(0.974) TCGA-HT-7478-01 2 11728938 11728938 C T GREB1 Missense_Mutation p.T409M 0.06 deleterious(0) possibly_damaging(0.885) TCGA-HT-7478-01 2 160295595 160295595 T A BAZ2B Missense_Mutation p.E275D 0.11 benign(0.217) TCGA-HT-7478-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7478-01 2 219000407 219000407 G C CXCR2 Missense_Mutation p.A295P 0.28 deleterious(0) probably_damaging(0.999) TCGA-HT-7478-01 2 234602275 234602275 G C UGT1A6 Missense_Mutation p.V209L 0.33 tolerated(0.11) benign(0.058) TCGA-HT-7478-01 2 49190307 49190307 G T FSHR Missense_Mutation p.H551Q 0.24 tolerated(0.14) benign(0.023) TCGA-HT-7478-01 2 79253211 79253211 G A REG3G 5'UTR 0.37 TCGA-HT-7478-01 3 101447686 101447686 G C CEP97 Missense_Mutation p.E118Q 0.36 deleterious(0.01) benign(0.321) TCGA-HT-7478-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.13 tolerated(0.44) benign(0.085) TCGA-HT-7478-01 6 100062262 100062262 G A PRDM13 Missense_Mutation p.R584H 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-HT-7478-01 8 27145295 27145295 C T TRIM35 Silent p.S418S 0.29 TCGA-HT-7478-01 9 140136262 140136262 G A TUBB4B Silent p.V49V 0.11 TCGA-HT-7478-01 X 76813082 76813082 A G ATRX Missense_Mutation p.V2180A 0.61 possibly_damaging(0.9) TCGA-HT-7479-01 10 50723345 50723345 C T ERCC6-PGBD3 3'UTR 0.27 TCGA-HT-7479-01 10 93136 93136 G A TUBB8 Missense_Mutation p.T399M 0.10 deleterious_low_confidence(0.03) probably_damaging(0.995) TCGA-HT-7479-01 13 43362967 43362967 A G FAM216B 3'UTR 0.30 TCGA-HT-7479-01 14 21469756 21469756 T C SLC39A2 3'UTR 0.13 TCGA-HT-7479-01 15 25438440 25438440 A G SNORD115-11 3'Flank 0.21 TCGA-HT-7479-01 15 28171297 28171297 A - OCA2 Frame_Shift_Del p.F685Lfs*7 0.19 TCGA-HT-7479-01 17 39596991 39596991 G A KRT38 Silent p.P61P 0.07 TCGA-HT-7479-01 17 72233513 72233513 C T TTYH2 Silent p.G165G 0.23 TCGA-HT-7479-01 17 72923807 72923807 C A OTOP2 Missense_Mutation p.A186E 0.09 tolerated(0.06) possibly_damaging(0.796) TCGA-HT-7479-01 17 7578413 7578413 C T TP53 Missense_Mutation p.V173M 0.54 deleterious(0.02) probably_damaging(1) TCGA-HT-7479-01 19 17487967 17487967 A G PLVAP Missense_Mutation p.V44A 0.26 deleterious(0) probably_damaging(0.999) TCGA-HT-7479-01 19 53384195 53384195 C - ZNF320 Frame_Shift_Del p.S395Ifs*86 0.19 TCGA-HT-7479-01 1 158670418 158670418 T C OR6K2 Missense_Mutation p.I9V 0.18 tolerated(1) benign(0) TCGA-HT-7479-01 1 220835578 220835578 A G MARK1 3'UTR 0.33 TCGA-HT-7479-01 1 2415924 2415924 T G PLCH2 Missense_Mutation p.F201C 0.22 deleterious(0) probably_damaging(0.999) TCGA-HT-7479-01 1 40961691 40961691 A G ZFP69 Missense_Mutation p.H514R 0.22 tolerated(0.65) benign(0.157) TCGA-HT-7479-01 21 46032549 46032549 C T KRTAP10-8 Missense_Mutation p.P178S 0.04 deleterious(0.03) unknown(0) TCGA-HT-7479-01 22 26829961 26829961 A G ASPHD2 Missense_Mutation p.Y127C 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-HT-7479-01 2 131521009 131521009 C T AMER3 Missense_Mutation p.T455M 0.30 tolerated(0.19) benign(0.243) TCGA-HT-7479-01 2 1906994 1906994 C T MYT1L Silent p.P628P 0.29 TCGA-HT-7479-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-HT-7479-01 2 74688527 74688527 G A MOGS Missense_Mutation p.R797C 0.26 deleterious(0) possibly_damaging(0.893) TCGA-HT-7479-01 3 122003874 122003874 C A CASR Missense_Mutation p.L1035M 0.26 tolerated_low_confidence(0.23) benign(0.004) TCGA-HT-7479-01 3 136729089 136729089 G T IL20RB 3'UTR 0.07 TCGA-HT-7479-01 3 52745684 52745684 G T NEK4 3'UTR 0.14 TCGA-HT-7479-01 4 79428637 79428637 T C FRAS1 Missense_Mutation p.S3127P 0.11 probably_damaging(0.962) TCGA-HT-7479-01 5 133493602 133493602 A G SKP1 Intron 0.39 TCGA-HT-7479-01 5 140750527 140750527 G T PCDHGB3 Missense_Mutation p.S189I 0.21 tolerated(0.09) benign(0.201) TCGA-HT-7479-01 5 150275093 150275093 T A ZNF300 Missense_Mutation p.I586F 0.26 deleterious(0) probably_damaging(0.997) TCGA-HT-7479-01 5 66478646 66478646 C T CD180 3'UTR 0.14 TCGA-HT-7479-01 6 26423175 26423175 G A BTN2A3P RNA 0.29 TCGA-HT-7479-01 6 7229937 7229937 G T RREB1 Silent p.P535P 0.23 TCGA-HT-7479-01 7 137028316 137028316 G C PTN 5'UTR 0.09 TCGA-HT-7479-01 7 99302982 99302982 G A CYP3A7 3'UTR 0.16 TCGA-HT-7479-01 8 144681130 144681130 G T TIGD5 Missense_Mutation p.A353S 0.29 tolerated(0.06) probably_damaging(1) TCGA-HT-7479-01 9 90501078 90501078 T C SPATA31E1 Missense_Mutation p.V559A 0.06 deleterious(0.02) benign(0.054) TCGA-HT-7479-01 X 34149060 34149060 C G FAM47A Missense_Mutation p.E446Q 0.47 deleterious(0.04) probably_damaging(0.969) TCGA-HT-7480-01 10 5948527 5948527 G T FBXO18 Missense_Mutation p.V280L 0.22 deleterious(0.02) benign(0.251) TCGA-HT-7480-01 11 1269703 1269703 G A MUC5B Missense_Mutation p.V3865M 0.11 unknown(0) TCGA-HT-7480-01 11 46671757 46671757 G A ATG13 Silent p.T116T 0.37 TCGA-HT-7480-01 11 6653011 6653011 G A DCHS1 Missense_Mutation p.R1171C 0.57 deleterious(0.03) probably_damaging(1) TCGA-HT-7480-01 13 21549240 21549240 G A LATS2 Silent p.N1012N 0.25 TCGA-HT-7480-01 14 20345254 20345254 C A OR4K2 Silent p.T276T 0.13 TCGA-HT-7480-01 14 55255717 55255717 G A SAMD4A 3'UTR 0.51 TCGA-HT-7480-01 14 65544633 65544633 T G MAX Missense_Mutation p.Q98P 0.21 deleterious(0) benign(0.03) TCGA-HT-7480-01 17 10300214 10300214 C T MYH8 Missense_Mutation p.R1423Q 0.28 tolerated(0.05) possibly_damaging(0.595) TCGA-HT-7480-01 17 27018008 27018008 C T SUPT6H Missense_Mutation p.A1187V 0.11 deleterious(0) possibly_damaging(0.578) TCGA-HT-7480-01 17 39580429 39580429 G A KRT37 Missense_Mutation p.A116V 0.31 deleterious(0.01) probably_damaging(1) TCGA-HT-7480-01 17 74625638 74625638 G A ST6GALNAC1 Missense_Mutation p.T96I 0.15 benign(0.01) TCGA-HT-7480-01 18 202880 202880 C T USP14 Nonsense_Mutation p.R293* 0.17 TCGA-HT-7480-01 19 23542477 23542477 C T ZNF91 Missense_Mutation p.G1102R 0.30 deleterious(0.01) possibly_damaging(0.907) TCGA-HT-7480-01 19 42796451 42796451 G T CIC Splice_Site p.X1003_splice 0.38 TCGA-HT-7480-01 1 153655965 153655965 C T NPR1 Silent p.N459N 0.19 TCGA-HT-7480-01 1 160811091 160811091 G A CD244 Silent p.G193G 0.18 TCGA-HT-7480-01 1 205897099 205897099 G A SLC26A9 Silent p.S344S 0.12 TCGA-HT-7480-01 1 32101082 32101082 C T PEF1 Silent p.P22P 0.19 TCGA-HT-7480-01 20 49626813 49626813 G A KCNG1 Silent p.D21D 0.20 TCGA-HT-7480-01 20 5905619 5905619 A G CHGB Missense_Mutation p.K653R 0.45 deleterious(0) benign(0.328) TCGA-HT-7480-01 21 45838405 45838405 G A TRPM2 Missense_Mutation p.R1143Q 0.03 tolerated(0.14) benign(0.022) TCGA-HT-7480-01 2 136626216 136626216 C A MCM6 Missense_Mutation p.D194Y 0.04 deleterious(0) probably_damaging(0.928) TCGA-HT-7480-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7480-01 2 62733243 62733243 G A TMEM17 Missense_Mutation p.R8C 0.10 deleterious(0) probably_damaging(1) TCGA-HT-7480-01 2 64779134 64779134 C - AFTPH Frame_Shift_Del p.P176Lfs*7 0.14 TCGA-HT-7480-01 3 16306401 16306401 G A DPH3 5'UTR 0.07 TCGA-HT-7480-01 3 52255381 52255381 C A TLR9 Missense_Mutation p.R1138L 0.16 deleterious(0) probably_damaging(0.999) TCGA-HT-7480-01 5 64814279 64814279 G A CENPK 3'UTR 0.48 TCGA-HT-7480-01 6 132059230 132059230 G - ENPP3 Frame_Shift_Del p.V743* 0.17 TCGA-HT-7480-01 7 21789848 21789848 C G DNAH11 Missense_Mutation p.P2943A 0.42 possibly_damaging(0.492) TCGA-HT-7480-01 7 540795 540795 C T PDGFA Missense_Mutation p.A180T 0.06 tolerated(1) benign(0.001) TCGA-HT-7480-01 8 39114706 39114706 G T ADAM32 Missense_Mutation p.G669V 0.31 tolerated(0.08) benign(0.01) TCGA-HT-7480-01 8 99129320 99129320 G A HRSP12 Missense_Mutation p.S2L 0.10 tolerated(0.07) benign(0.003) TCGA-HT-7480-01 9 117891 117891 T G FOXD4 Missense_Mutation p.S77R 0.15 deleterious(0.03) benign(0.048) TCGA-HT-7480-01 9 35093984 35093984 G A PIGO Silent p.F231F 0.22 TCGA-HT-7481-01 12 7635248 7635248 G A CD163 Missense_Mutation p.R1080W 0.31 deleterious(0.04) benign(0.01) TCGA-HT-7481-01 12 91449544 91449544 T C KERA Missense_Mutation p.D172G 0.24 deleterious(0.01) probably_damaging(0.978) TCGA-HT-7481-01 14 44975038 44975038 G T FSCB Silent p.R385R 0.08 TCGA-HT-7481-01 16 75661771 75661771 T C KARS 3'UTR 0.25 TCGA-HT-7481-01 18 70417415 70417415 T C NETO1 Missense_Mutation p.I475V 0.22 tolerated_low_confidence(0.61) benign(0.043) TCGA-HT-7481-01 19 55494669 55494669 G A NLRP2 Missense_Mutation p.V535I 0.07 tolerated(0.15) benign(0.017) TCGA-HT-7481-01 1 152191242 152191242 A G HRNR Missense_Mutation p.S955P 0.25 unknown(0) TCGA-HT-7481-01 1 78420962 78420962 C T FUBP1 Nonsense_Mutation p.W586* 0.30 TCGA-HT-7481-01 20 14306271 14306271 T C FLRT3 Missense_Mutation p.S628G 0.11 tolerated(0.38) benign(0.101) TCGA-HT-7481-01 20 43348625 43348625 T G WISP2 Missense_Mutation p.C50G 0.23 deleterious(0) probably_damaging(1) TCGA-HT-7481-01 20 51873020 51873020 C T TSHZ2 Missense_Mutation p.A1008V 0.24 deleterious(0) probably_damaging(0.999) TCGA-HT-7481-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7481-01 2 25470985 25470985 G C DNMT3A Missense_Mutation p.A259G 0.31 tolerated(0.09) benign(0.345) TCGA-HT-7481-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.14 tolerated(0.05) possibly_damaging(0.704) TCGA-HT-7481-01 3 178928078 178928080 AGA - PIK3CA In_Frame_Del p.E453del 0.09 TCGA-HT-7481-01 3 178952072 178952072 A G PIK3CA Missense_Mutation p.M1043V 0.07 tolerated(0.06) benign(0.037) TCGA-HT-7481-01 3 197751579 197751579 C G LMLN Missense_Mutation p.L563V 0.10 tolerated(0.31) benign(0.019) TCGA-HT-7481-01 4 15060817 15060817 A T CPEB2 Missense_Mutation p.I863L 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-HT-7481-01 4 70155435 70155435 G A UGT2B28 Missense_Mutation p.R352Q 0.43 tolerated(0.21) benign(0.009) TCGA-HT-7481-01 4 76447224 76447224 A C THAP6 Intron 0.41 TCGA-HT-7481-01 4 80328636 80328636 T C GK2 Missense_Mutation p.Y240C 0.27 deleterious(0) probably_damaging(1) TCGA-HT-7481-01 5 156485007 156485007 C A HAVCR1 5'UTR 0.10 TCGA-HT-7481-01 5 37309323 37309323 T C NUP155 Missense_Mutation p.E892G 0.25 deleterious(0.01) possibly_damaging(0.555) TCGA-HT-7481-01 5 67589147 67589149 AAA - PIK3R1 In_Frame_Del p.K379del 0.12 TCGA-HT-7481-01 6 116265543 116265543 G A FRK Missense_Mutation p.A335V 0.06 deleterious(0) probably_damaging(0.994) TCGA-HT-7481-01 6 161470895 161470895 G C MAP3K4 Missense_Mutation p.D531H 0.12 deleterious(0) probably_damaging(0.996) TCGA-HT-7481-01 6 26199854 26199856 AGA - HIST1H2BF In_Frame_Del p.K25del 0.31 TCGA-HT-7481-01 6 39513390 39513390 C T KIF6 Missense_Mutation p.R419H 0.29 deleterious(0.01) benign(0.191) TCGA-HT-7481-01 6 43418774 43418774 G A DLK2 Missense_Mutation p.R219C 0.07 deleterious(0.03) possibly_damaging(0.79) TCGA-HT-7481-01 6 7231010 7231010 C T RREB1 Missense_Mutation p.A893V 0.07 tolerated(0.09) benign(0.3) TCGA-HT-7481-01 6 90660233 90660235 TCC - BACH2 In_Frame_Del p.E530del 0.27 TCGA-HT-7481-01 8 37734856 37734856 G A RAB11FIP1 Silent p.S195S 0.07 TCGA-HT-7481-01 9 139413067 139413069 AGT - NOTCH1 In_Frame_Del p.Y358del 0.20 TCGA-HT-7481-01 X 118222475 118222475 C A KIAA1210 Missense_Mutation p.M906I 0.12 tolerated(0.14) benign(0.001) TCGA-HT-7482-01 10 30316584 30316584 C G KIAA1462 Missense_Mutation p.L831F 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-HT-7482-01 11 1161875 1161875 C G MUC5AC Missense_Mutation p.P519A 0.14 deleterious(0.01) possibly_damaging(0.855) TCGA-HT-7482-01 11 1477653 1477653 G A BRSK2 Missense_Mutation p.V628M 0.42 tolerated(0.2) probably_damaging(0.969) TCGA-HT-7482-01 11 57093772 57093772 T G SSRP1 3'UTR 0.26 TCGA-HT-7482-01 12 7248967 7248967 C T C1RL 3'UTR 0.21 TCGA-HT-7482-01 12 85255483 85255483 A G SLC6A15 Silent p.A707A 0.07 TCGA-HT-7482-01 16 4242361 4242361 G A SRL Silent p.F405F 0.39 TCGA-HT-7482-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.30 deleterious(0) probably_damaging(0.998) TCGA-HT-7482-01 17 7578475 7578475 G A TP53 Missense_Mutation p.P152L 0.36 tolerated(0.08) probably_damaging(0.91) TCGA-HT-7482-01 18 28968344 28968344 C T DSG4 Silent p.C77C 0.08 TCGA-HT-7482-01 19 7761948 7761948 G C FCER2 Silent p.S110S 0.21 TCGA-HT-7482-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HT-7482-01 3 109049418 109049418 G C DPPA4 Missense_Mutation p.A211G 0.08 tolerated(0.14) benign(0.128) TCGA-HT-7482-01 3 126732904 126732904 C G PLXNA1 Missense_Mutation p.N785K 0.19 tolerated(0.21) benign(0.004) TCGA-HT-7482-01 5 32101035 32101035 G A PDZD2 Intron 0.36 TCGA-HT-7482-01 6 134350799 134350799 C G SLC2A12 Missense_Mutation p.G55A 0.15 deleterious(0) probably_damaging(1) TCGA-HT-7482-01 6 62611243 62611243 G A KHDRBS2 Missense_Mutation p.R173C 0.40 deleterious(0.01) probably_damaging(0.959) TCGA-HT-7482-01 7 116381017 116381017 C T MET Nonsense_Mutation p.R547* 0.20 TCGA-HT-7482-01 7 134256364 134256364 T A AKR1B15 Missense_Mutation p.D148E 0.15 tolerated(0.95) benign(0) TCGA-HT-7482-01 7 38796519 38796519 G A VPS41 Silent p.D538D 0.30 TCGA-HT-7482-01 8 10583186 10583186 C G SOX7 3'UTR 0.29 TCGA-HT-7482-01 8 70981760 70981760 C T PRDM14 Silent p.P112P 0.29 TCGA-HT-7482-01 X 106310757 106310757 C A RBM41 Nonstop_Mutation p.*414Yext*13 0.21 TCGA-HT-7482-01 X 76849221 76849221 T C ATRX Missense_Mutation p.K2019E 0.26 possibly_damaging(0.562) TCGA-HT-7483-01 10 102120548 102120548 A C SCD Missense_Mutation p.Y313S 0.05 deleterious(0.01) probably_damaging(1) TCGA-HT-7483-01 11 65988687 65988687 A G PACS1 Missense_Mutation p.K421R 0.05 tolerated(0.45) benign(0.005) TCGA-HT-7483-01 11 71152414 71152414 G A DHCR7 Missense_Mutation p.A162V 0.08 tolerated(0.09) benign(0.079) TCGA-HT-7483-01 12 95604907 95604907 T G FGD6 Silent p.A51A 0.37 TCGA-HT-7483-01 16 22359074 22359074 C G CDR2 Missense_Mutation p.E193Q 0.48 tolerated(0.07) probably_damaging(0.986) TCGA-HT-7483-01 16 32077672 32077672 G C IGHV3OR16-9 Missense_Mutation p.C96S 0.20 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-HT-7483-01 17 56620284 56620284 C T C17orf47 Missense_Mutation p.G422R 0.37 deleterious(0) possibly_damaging(0.595) TCGA-HT-7483-01 17 7577551 7577551 C G TP53 Missense_Mutation p.G244R 0.82 deleterious(0) probably_damaging(1) TCGA-HT-7483-01 19 39591277 39591277 G C PAPL Missense_Mutation p.W229C 0.39 deleterious(0) probably_damaging(0.992) TCGA-HT-7483-01 1 154965246 154965246 A G FLAD1 Missense_Mutation p.I538V 0.37 tolerated(0.42) benign(0.013) TCGA-HT-7483-01 1 42049199 42049199 G A HIVEP3 Nonsense_Mutation p.R424* 0.29 TCGA-HT-7483-01 20 4202427 4202427 G T ADRA1D Silent p.R488R 0.46 TCGA-HT-7483-01 20 60419758 60419758 G A CDH4 Missense_Mutation p.R204Q 0.12 tolerated(0.28) possibly_damaging(0.648) TCGA-HT-7483-01 20 62493607 62493607 C T ABHD16B Silent p.P238P 0.57 TCGA-HT-7483-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HT-7483-01 3 122002611 122002611 G A CASR Missense_Mutation p.E614K 0.18 deleterious(0) probably_damaging(0.978) TCGA-HT-7483-01 3 19389439 19389439 G A KCNH8 Missense_Mutation p.E265K 0.32 deleterious(0) probably_damaging(0.995) TCGA-HT-7483-01 4 187004365 187004365 A G TLR3 Missense_Mutation p.T509A 0.44 deleterious(0) benign(0.432) TCGA-HT-7483-01 5 147554943 147554943 C A SPINK14 Nonsense_Mutation p.Y92* 0.12 TCGA-HT-7483-01 X 76814319 76814319 T C ATRX Splice_Site p.X2109_splice 0.71 TCGA-HT-7485-01 10 53459334 53459334 T C CSTF2T 5'UTR 0.47 TCGA-HT-7485-01 12 6155976 6155976 C T VWF Missense_Mutation p.E732K 0.09 deleterious(0) possibly_damaging(0.829) TCGA-HT-7485-01 12 66642068 66642068 T C IRAK3 3'UTR 0.20 TCGA-HT-7485-01 15 94901781 94901781 G A MCTP2 Missense_Mutation p.G414D 0.36 tolerated(0.36) benign(0.02) TCGA-HT-7485-01 17 7250531 7250531 C T ACAP1 Missense_Mutation p.T438I 0.66 tolerated(0.12) probably_damaging(0.998) TCGA-HT-7485-01 17 7578203 7578203 C T TP53 Missense_Mutation p.V216M 0.83 deleterious(0) probably_damaging(1) TCGA-HT-7485-01 17 8424575 8424575 G A MYH10 Silent p.V662V 0.34 TCGA-HT-7485-01 18 28725703 28725703 G A DSC1 Silent p.D270D 0.07 TCGA-HT-7485-01 19 4556083 4556083 C T SEMA6B Missense_Mutation p.V130I 0.16 tolerated(1) benign(0.173) TCGA-HT-7485-01 19 53431961 53431961 G A ZNF321P 3'UTR 0.06 TCGA-HT-7485-01 2 170093662 170093662 T C LRP2 Missense_Mutation p.S1548G 0.39 benign(0.168) TCGA-HT-7485-01 2 189876602 189876602 T C COL3A1 3'UTR 0.42 TCGA-HT-7485-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7485-01 4 85612906 85612906 T C WDFY3 Missense_Mutation p.T3028A 0.36 tolerated(0.35) benign(0.05) TCGA-HT-7485-01 6 43403556 43403556 A G ABCC10 Missense_Mutation p.N559S 0.38 deleterious(0) possibly_damaging(0.501) TCGA-HT-7485-01 6 63990506 63990506 C T LGSN Missense_Mutation p.S317N 0.35 deleterious(0) probably_damaging(1) TCGA-HT-7485-01 7 100469261 100469261 G A TRIP6 Missense_Mutation p.V366M 0.29 deleterious(0) probably_damaging(0.961) TCGA-HT-7485-01 X 135432487 135432487 G C GPR112 Missense_Mutation p.V2208L 0.08 tolerated(0.14) benign(0.016) TCGA-HT-7485-01 X 76940489 76940489 T A ATRX Nonsense_Mutation p.K202* 0.86 TCGA-HT-7601-01 10 81928744 81928744 G A ANXA11 Missense_Mutation p.P181L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-HT-7601-01 11 34182569 34182569 G A ABTB2 Missense_Mutation p.R760W 0.12 deleterious(0.01) probably_damaging(0.927) TCGA-HT-7601-01 11 67269773 67269773 C T PITPNM1 Silent p.Q135Q 0.30 TCGA-HT-7601-01 11 93822035 93822035 T C HEPHL1 Missense_Mutation p.I732T 0.25 tolerated(0.67) benign(0.007) TCGA-HT-7601-01 12 52309001 52309008 GCACACAG - ACVRL1 Splice_Site p.X258_splice 0.18 TCGA-HT-7601-01 12 9717870 9717870 A T RP11-726G1.1 RNA 0.49 TCGA-HT-7601-01 13 20763148 20763148 G A GJB2 Silent p.F191F 0.05 TCGA-HT-7601-01 13 98658457 98658457 A G IPO5 Missense_Mutation p.E542G 0.09 tolerated(0.1) possibly_damaging(0.691) TCGA-HT-7601-01 15 57555366 57555369 AAAG - TCF12 Frame_Shift_Del p.E548Rfs*14 0.38 TCGA-HT-7601-01 15 94841633 94841633 C T MCTP2 Missense_Mutation p.R47C 0.10 deleterious(0.04) benign(0.028) TCGA-HT-7601-01 16 57147304 57147304 C G CPNE2 Silent p.L95L 0.12 TCGA-HT-7601-01 17 28545875 28545875 C T SLC6A4 Missense_Mutation p.G140R 0.31 deleterious(0) probably_damaging(1) TCGA-HT-7601-01 17 38792704 38792704 C T SMARCE1 Nonsense_Mutation p.W104* 0.05 TCGA-HT-7601-01 17 66525030 66525030 A T PRKAR1A Missense_Mutation p.E263D 0.09 deleterious(0) possibly_damaging(0.749) TCGA-HT-7601-01 17 71418471 71418471 G A SDK2 Missense_Mutation p.A667V 0.04 deleterious(0) probably_damaging(0.999) TCGA-HT-7601-01 17 73567818 73567818 G A LLGL2 Silent p.V749V 0.09 TCGA-HT-7601-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.62 deleterious(0) probably_damaging(0.998) TCGA-HT-7601-01 19 42930578 42930578 A T LIPE Missense_Mutation p.S242T 0.42 tolerated_low_confidence(0.07) benign(0.054) TCGA-HT-7601-01 19 42930579 42930579 A T LIPE Silent p.S241S 0.42 TCGA-HT-7601-01 2 177053643 177053643 G T HOXD1 Missense_Mutation p.Q38H 0.24 deleterious(0.01) possibly_damaging(0.543) TCGA-HT-7601-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7601-01 3 171427368 171427368 T C PLD1 Missense_Mutation p.E348G 0.29 tolerated(0.07) benign(0) TCGA-HT-7601-01 4 41015610 41015610 C T APBB2 Silent p.P275P 0.26 TCGA-HT-7601-01 5 161324271 161324271 A T GABRA1 Missense_Mutation p.K405I 0.04 tolerated(0.07) probably_damaging(0.997) TCGA-HT-7601-01 7 156742958 156742958 T C NOM1 Missense_Mutation p.L176S 0.22 deleterious(0.01) benign(0.009) TCGA-HT-7601-01 8 121238908 121238908 C T COL14A1 Missense_Mutation p.T636M 0.34 deleterious(0) benign(0.027) TCGA-HT-7601-01 8 126075804 126075804 G C KIAA0196 Silent p.V456V 0.32 TCGA-HT-7601-01 8 73849082 73849082 G C KCNB2 Missense_Mutation p.A498P 0.27 tolerated(0.19) benign(0.033) TCGA-HT-7601-01 8 74858991 74858991 C T TCEB1 Silent p.S71S 0.05 TCGA-HT-7601-01 9 21166611 21166611 T C IFNA21 Translation_Start_Site p.M1? 0.31 deleterious(0.02) benign(0.077) TCGA-HT-7601-01 X 117032912 117032912 T G KLHL13 Missense_Mutation p.T646P 0.08 tolerated(0.32) benign(0.001) TCGA-HT-7601-01 X 49957504 49957504 G C AKAP4 Missense_Mutation p.D620E 0.04 tolerated(0.64) benign(0.093) TCGA-HT-7602-01 10 133757525 133757525 T G PPP2R2D Missense_Mutation p.I146M 0.39 deleterious(0.04) benign(0.189) TCGA-HT-7602-01 11 58978417 58978417 G A MPEG1 Missense_Mutation p.A641V 0.08 tolerated(0.55) benign(0.01) TCGA-HT-7602-01 12 109654442 109654442 G A ACACB Missense_Mutation p.G1124S 0.07 tolerated(0.09) probably_damaging(0.98) TCGA-HT-7602-01 12 54911640 54911640 G A NCKAP1L Missense_Mutation p.R419Q 0.26 tolerated(0.17) benign(0.081) TCGA-HT-7602-01 13 100637726 100637726 G T ZIC2 Silent p.A463A 0.16 TCGA-HT-7602-01 15 74653979 74653979 C G CYP11A1 Intron 0.31 TCGA-HT-7602-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.15 deleterious(0) probably_damaging(0.997) TCGA-HT-7602-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.08 TCGA-HT-7602-01 17 7578492 7578492 C T TP53 Nonsense_Mutation p.W146* 0.05 TCGA-HT-7602-01 1 44069662 44069662 C T PTPRF Missense_Mutation p.R947C 0.08 deleterious(0.04) possibly_damaging(0.832) TCGA-HT-7602-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7602-01 3 195925263 195925263 G A ZDHHC19 Missense_Mutation p.P278L 0.08 tolerated(0.2) benign(0.001) TCGA-HT-7602-01 5 33576465 33576465 G A ADAMTS12 Silent p.P1222P 0.06 TCGA-HT-7602-01 8 18257912 18257912 G C NAT2 Missense_Mutation p.Q133H 0.20 tolerated(0.06) benign(0.173) TCGA-HT-7603-01 10 48390723 48390723 A G RBP3 Missense_Mutation p.I52T 0.17 deleterious(0.01) possibly_damaging(0.671) TCGA-HT-7603-01 10 73122070 73122070 C T SLC29A3 Missense_Mutation p.A378V 0.34 tolerated(0.51) benign(0.001) TCGA-HT-7603-01 10 81706233 81706233 G A SFTPD Silent p.G61G 0.08 TCGA-HT-7603-01 11 61504739 61504739 G A DAGLA Missense_Mutation p.R486H 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-HT-7603-01 11 7847281 7847281 A G OR5P3 Missense_Mutation p.V80A 0.22 tolerated(0.9) benign(0.103) TCGA-HT-7603-01 11 7847305 7847305 C G OR5P3 Missense_Mutation p.G72A 0.23 tolerated(0.07) benign(0.026) TCGA-HT-7603-01 11 82644345 82644345 A G C11orf82 Silent p.G655G 0.06 TCGA-HT-7603-01 12 118693346 118693346 T C TAOK3 Silent p.P9P 0.09 TCGA-HT-7603-01 12 130898840 130898840 G A RIMBP2 Nonsense_Mutation p.R828* 0.41 TCGA-HT-7603-01 12 7302188 7302188 A G CLSTN3 Missense_Mutation p.D715G 0.10 tolerated(0.13) benign(0.003) TCGA-HT-7603-01 13 49070412 49070412 T C RCBTB2 Missense_Mutation p.K477R 0.14 tolerated(0.53) benign(0.009) TCGA-HT-7603-01 13 51825995 51825995 C T FAM124A Silent p.P200P 0.40 TCGA-HT-7603-01 16 24788378 24788378 G T TNRC6A Missense_Mutation p.Q96H 0.32 deleterious_low_confidence(0.05) benign(0.216) TCGA-HT-7603-01 16 24788379 24788379 C T TNRC6A Nonsense_Mutation p.Q97* 0.33 TCGA-HT-7603-01 16 51171049 51171049 C A SALL1 Missense_Mutation p.D1317Y 0.28 deleterious(0) probably_damaging(0.984) TCGA-HT-7603-01 16 67694142 67694142 C T ACD Silent p.P80P 0.05 TCGA-HT-7603-01 16 69199373 69199373 C G CIRH1A Missense_Mutation p.P593A 0.20 tolerated(0.07) possibly_damaging(0.607) TCGA-HT-7603-01 17 2605307 2605307 G A CLUH Nonsense_Mutation p.R136* 0.39 TCGA-HT-7603-01 17 62518886 62518886 T G CEP95 Missense_Mutation p.I261S 0.10 deleterious(0) possibly_damaging(0.843) TCGA-HT-7603-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.60 deleterious(0) probably_damaging(1) TCGA-HT-7603-01 18 29126613 29126613 T C DSG2 Silent p.F1088F 0.11 TCGA-HT-7603-01 19 13065170 13065170 C T GADD45GIP1 Missense_Mutation p.R174H 0.36 deleterious(0) probably_damaging(0.956) TCGA-HT-7603-01 19 14876167 14876167 C G EMR2 Missense_Mutation p.D291H 0.05 deleterious(0.04) benign(0.03) TCGA-HT-7603-01 19 34929585 34929585 G A UBA2 Silent p.P165P 0.25 TCGA-HT-7603-01 19 42730619 42730619 G A ZNF526 3'UTR 0.14 TCGA-HT-7603-01 1 156255699 156255699 C T TMEM79 Missense_Mutation p.R228W 0.28 deleterious(0.04) probably_damaging(0.957) TCGA-HT-7603-01 1 220936309 220936309 T C MARC2 Silent p.L223L 0.17 TCGA-HT-7603-01 1 6488429 6488429 C T ESPN Silent p.A146A 0.07 TCGA-HT-7603-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7603-01 3 32031226 32031226 C G ZNF860 Missense_Mutation p.L219V 0.16 deleterious(0) benign(0) TCGA-HT-7603-01 6 136597287 136597287 T G BCLAF1 Missense_Mutation p.Y459S 0.17 tolerated(0.38) benign(0.188) TCGA-HT-7603-01 7 95001482 95001482 T C PON3 Intron 0.26 TCGA-HT-7603-01 8 42620342 42620342 C T CHRNA6 Missense_Mutation p.V29M 0.27 tolerated(0.22) benign(0.001) TCGA-HT-7603-01 9 132757223 132757223 G C FNBP1 Missense_Mutation p.N13K 0.22 tolerated(0.1) benign(0.118) TCGA-HT-7603-01 X 101576768 101576768 T C NXF2 Missense_Mutation p.S422P 0.21 deleterious(0) probably_damaging(0.966) TCGA-HT-7603-01 X 131351245 131351245 C T RAP2C Missense_Mutation p.A18T 0.03 deleterious(0.03) benign(0.288) TCGA-HT-7603-01 X 76909629 76909629 G A ATRX Nonsense_Mutation p.R1426* 0.52 TCGA-HT-7603-01 Y 15410959 15410959 A G UTY Missense_Mutation p.V1152A 0.67 deleterious(0) probably_damaging(0.927) TCGA-HT-7604-01 10 13698931 13698931 G A FRMD4A Silent p.G886G 0.33 TCGA-HT-7604-01 10 8100386 8100386 G A GATA3 Silent p.T120T 0.38 TCGA-HT-7604-01 11 108256655 108256655 T C C11orf65 Missense_Mutation p.N260S 0.06 tolerated(0.16) benign(0.311) TCGA-HT-7604-01 11 114182852 114182852 G A NNMT Missense_Mutation p.G150R 0.53 tolerated(0.11) possibly_damaging(0.5) TCGA-HT-7604-01 11 118965808 118965809 - C H2AFX Frame_Shift_Ins p.G100Rfs*131 0.22 TCGA-HT-7604-01 11 48267032 48267032 C G OR4X2 Missense_Mutation p.T126S 0.06 tolerated(0.21) benign(0.009) TCGA-HT-7604-01 11 61178544 61178544 G A CPSF7 Silent p.S472S 0.41 TCGA-HT-7604-01 12 111786145 111786145 G A CUX2 3'UTR 0.09 TCGA-HT-7604-01 12 26985668 26985668 G A ITPR2 Missense_Mutation p.S16F 0.17 deleterious(0) probably_damaging(1) TCGA-HT-7604-01 12 97151344 97151344 C T C12orf55 Missense_Mutation p.S2673L 0.27 deleterious(0.01) benign(0.133) TCGA-HT-7604-01 15 65684524 65684524 C T IGDCC4 Silent p.V690V 0.39 TCGA-HT-7604-01 16 4732911 4732911 C T MGRN1 Silent p.G482G 0.43 TCGA-HT-7604-01 16 67688095 67688095 G A RLTPR Missense_Mutation p.R1055H 0.20 deleterious(0) probably_damaging(0.996) TCGA-HT-7604-01 16 85952180 85952180 G A IRF8 Silent p.P253P 0.73 TCGA-HT-7604-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.41 deleterious(0) probably_damaging(0.997) TCGA-HT-7604-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.36 TCGA-HT-7604-01 18 47107968 47107968 T C LIPG Missense_Mutation p.M326T 0.43 tolerated(0.31) benign(0.006) TCGA-HT-7604-01 18 618009 618009 G A CLUL1 Silent p.P3P 0.14 TCGA-HT-7604-01 18 77227575 77227575 C T NFATC1 Silent p.P682P 0.33 TCGA-HT-7604-01 19 2214615 2214615 G T DOT1L Intron 0.15 TCGA-HT-7604-01 19 37838730 37838730 C T HKR1 Missense_Mutation p.A90V 0.06 deleterious(0.04) benign(0.015) TCGA-HT-7604-01 19 38995497 38995497 A G RYR1 Missense_Mutation p.K2726R 0.07 benign(0.094) TCGA-HT-7604-01 19 47593321 47593321 G A ZC3H4 Silent p.G206G 0.35 TCGA-HT-7604-01 19 49898432 49898432 G A CCDC155 Missense_Mutation p.R73H 0.09 tolerated(0.15) benign(0.105) TCGA-HT-7604-01 19 9062722 9062722 T C MUC16 Missense_Mutation p.T8242A 0.50 unknown(0) TCGA-HT-7604-01 1 112270041 112270041 C T FAM212B Missense_Mutation p.R148Q 0.43 tolerated(0.95) benign(0.024) TCGA-HT-7604-01 1 12439544 12439544 A G VPS13D Missense_Mutation p.Y3695C 0.39 possibly_damaging(0.601) TCGA-HT-7604-01 1 40318400 40318400 T C TRIT1 Intron 0.46 TCGA-HT-7604-01 20 3356865 3356865 T C C20orf194 Missense_Mutation p.H123R 0.60 tolerated(0.06) possibly_damaging(0.735) TCGA-HT-7604-01 20 56139236 56139236 G A PCK1 Missense_Mutation p.A325T 0.18 deleterious(0) probably_damaging(0.996) TCGA-HT-7604-01 2 145147369 145147369 T C ZEB2 Silent p.K1098K 0.30 TCGA-HT-7604-01 2 170030513 170030513 T C LRP2 Missense_Mutation p.N3644D 0.40 probably_damaging(0.997) TCGA-HT-7604-01 2 170488410 170488410 G A PPIG Missense_Mutation p.R299K 0.45 tolerated(0.67) unknown(0) TCGA-HT-7604-01 2 209113113 209113113 G T IDH1 Missense_Mutation p.R132S 0.54 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HT-7604-01 2 21230555 21230555 A C APOB Nonsense_Mutation p.L3062* 0.07 TCGA-HT-7604-01 2 220072487 220072487 C G ZFAND2B Missense_Mutation p.Q90E 0.11 tolerated(0.08) probably_damaging(0.966) TCGA-HT-7604-01 2 95542422 95542422 G A TEKT4 Missense_Mutation p.A406T 0.33 deleterious(0.01) benign(0.017) TCGA-HT-7604-01 3 128628194 128628194 C G ACAD9 Missense_Mutation p.A498G 0.33 tolerated(0.43) benign(0.033) TCGA-HT-7604-01 3 151461908 151461908 G C AADACL2 Missense_Mutation p.R130T 0.41 tolerated(0.05) probably_damaging(1) TCGA-HT-7604-01 3 97852349 97852349 C G OR5H1 Missense_Mutation p.Q270E 0.50 tolerated(0.11) benign(0.029) TCGA-HT-7604-01 5 140725486 140725486 C T PCDHGA3 Missense_Mutation p.A629V 0.09 tolerated_low_confidence(0.05) possibly_damaging(0.645) TCGA-HT-7604-01 5 140812212 140812212 C T PCDHGA12 Missense_Mutation p.A629V 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.595) TCGA-HT-7604-01 5 56546841 56546841 C T GPBP1 Nonsense_Mutation p.R352* 0.34 TCGA-HT-7604-01 6 165715396 165715396 A G C6orf118 Missense_Mutation p.S139P 0.14 tolerated(0.15) benign(0.045) TCGA-HT-7604-01 6 31832672 31832674 AAG - SLC44A4 In_Frame_Del p.F618del 0.30 TCGA-HT-7604-01 6 32157564 32157564 C A PBX2 Silent p.G43G 0.33 TCGA-HT-7604-01 7 111617325 111617325 T A DOCK4 Missense_Mutation p.H188L 0.59 tolerated(0.06) benign(0.037) TCGA-HT-7604-01 7 141427096 141427098 ATC - WEE2 Intron 0.28 TCGA-HT-7604-01 7 4185446 4185446 G A SDK1 Missense_Mutation p.D1441N 0.64 tolerated(0.36) benign(0.009) TCGA-HT-7604-01 7 47897211 47897211 G A PKD1L1 Missense_Mutation p.P1528S 0.45 tolerated(0.11) possibly_damaging(0.505) TCGA-HT-7604-01 7 82580131 82580131 T C PCLO Missense_Mutation p.E3258G 0.07 unknown(0) TCGA-HT-7604-01 7 87214993 87214993 G A ABCB1 Missense_Mutation p.R41C 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-HT-7604-01 8 42297083 42297083 C T SLC20A2 Silent p.E273E 0.42 TCGA-HT-7604-01 X 123034427 123034427 A G XIAP Missense_Mutation p.E395G 0.86 tolerated(0.14) benign(0.002) TCGA-HT-7604-01 X 76937745 76937745 T - ATRX Frame_Shift_Del p.V1002* 0.49 TCGA-HT-7605-01 10 103343337 103343337 G A POLL Silent p.S331S 0.08 TCGA-HT-7605-01 12 122460016 122460016 C A BCL7A Silent p.R7R 0.12 TCGA-HT-7605-01 12 6933475 6933475 C T GPR162 Silent p.A137A 0.33 TCGA-HT-7605-01 13 39265629 39265629 T C FREM2 Missense_Mutation p.V1383A 0.06 tolerated(0.26) benign(0.027) TCGA-HT-7605-01 15 56387426 56387426 G A RFX7 Nonsense_Mutation p.Q834* 0.05 TCGA-HT-7605-01 15 82554109 82554109 T C EFTUD1 Missense_Mutation p.N4S 0.17 tolerated(0.32) benign(0.001) TCGA-HT-7605-01 16 20471589 20471589 G T ACSM2A Missense_Mutation p.L51F 0.06 deleterious(0.04) benign(0.128) TCGA-HT-7605-01 16 30566916 30566916 G T ZNF764 Missense_Mutation p.Q276K 0.25 tolerated(0.93) possibly_damaging(0.675) TCGA-HT-7605-01 16 68900994 68900994 G A TANGO6 Missense_Mutation p.V289M 0.33 tolerated(0.13) benign(0.02) TCGA-HT-7605-01 17 10303716 10303716 G A MYH8 Silent p.S1242S 0.26 TCGA-HT-7605-01 17 42399117 42399117 C T SLC25A39 Missense_Mutation p.V115M 0.25 deleterious(0.02) benign(0.064) TCGA-HT-7605-01 17 48652951 48652951 G A CACNA1G Silent p.T396T 0.32 TCGA-HT-7605-01 17 7163696 7163696 C T CLDN7 Silent p.V211V 0.04 TCGA-HT-7605-01 17 7752905 7752905 C A KDM6B Missense_Mutation p.P1100H 0.09 probably_damaging(0.949) TCGA-HT-7605-01 19 52220383 52220383 C T HAS1 Missense_Mutation p.E256K 0.15 tolerated(0.29) benign(0.111) TCGA-HT-7605-01 19 8398111 8398111 C T KANK3 Missense_Mutation p.A575T 0.07 tolerated(0.45) possibly_damaging(0.695) TCGA-HT-7605-01 1 249107313 249107313 G A SH3BP5L Nonsense_Mutation p.R196* 0.10 TCGA-HT-7605-01 1 25140630 25140630 A G CLIC4 Silent p.P76P 0.13 TCGA-HT-7605-01 1 29585123 29585123 C A PTPRU Nonsense_Mutation p.Y104* 0.10 TCGA-HT-7605-01 20 55101032 55101032 G A FAM209A Missense_Mutation p.S141N 0.05 tolerated(0.37) benign(0.002) TCGA-HT-7605-01 20 62839350 62839350 G A MYT1 Silent p.E267E 0.23 TCGA-HT-7605-01 2 106746145 106746145 T C UXS1 Missense_Mutation p.T188A 0.35 tolerated(0.14) probably_damaging(0.997) TCGA-HT-7605-01 2 133721292 133721292 C T NCKAP5 Splice_Site p.X193_splice 0.22 TCGA-HT-7605-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7605-01 2 39008705 39008705 G A GEMIN6 Missense_Mutation p.G59R 0.26 deleterious(0.05) possibly_damaging(0.885) TCGA-HT-7605-01 2 74146597 74146597 C T ACTG2 Silent p.I342I 0.10 TCGA-HT-7605-01 3 119465994 119465994 C T MAATS1 Silent p.S645S 0.12 TCGA-HT-7605-01 3 121340407 121340407 C G FBXO40 Missense_Mutation p.A44G 0.07 deleterious(0.01) probably_damaging(0.967) TCGA-HT-7605-01 4 154542876 154542876 T A KIAA0922 Missense_Mutation p.F1245Y 0.12 tolerated(0.19) benign(0.02) TCGA-HT-7605-01 4 54324903 54324904 AT - FIP1L1 Frame_Shift_Del p.H528Qfs*14 0.13 TCGA-HT-7605-01 7 150439641 150439641 T C GIMAP5 Silent p.F138F 0.11 TCGA-HT-7605-01 7 39726381 39726381 G T RALA Splice_Site p.X38_splice 0.08 TCGA-HT-7605-01 8 131370312 131370312 A C ASAP1 Missense_Mutation p.F46C 0.20 deleterious(0) benign(0.221) TCGA-HT-7605-01 8 22146091 22146091 G A PIWIL2 Missense_Mutation p.A300T 0.05 tolerated(0.56) benign(0.002) TCGA-HT-7605-01 8 36642081 36642081 T C KCNU1 Silent p.S51S 0.10 TCGA-HT-7605-01 9 100897226 100897226 C A CORO2A Missense_Mutation p.W110C 0.29 deleterious(0) probably_damaging(1) TCGA-HT-7605-01 9 33467861 33467861 C T NOL6 Missense_Mutation p.R477H 0.09 tolerated(0.2) benign(0.003) TCGA-HT-7605-01 X 147106438 147106438 A G FMR1NB Missense_Mutation p.K229R 0.06 tolerated(0.06) possibly_damaging(0.486) TCGA-HT-7605-01 X 70626502 70626502 G T TAF1 Missense_Mutation p.R1358L 0.15 deleterious(0) probably_damaging(0.989) TCGA-HT-7606-01 10 61958113 61958113 T C ANK3 Silent p.L558L 0.43 TCGA-HT-7606-01 11 65408733 65408733 G A SIPA1 Missense_Mutation p.R114Q 0.40 deleterious(0.01) benign(0.399) TCGA-HT-7606-01 11 6789589 6789589 G A OR2AG2 Silent p.Y200Y 0.37 TCGA-HT-7606-01 12 19489486 19489486 A C PLEKHA5 Missense_Mutation p.E829A 0.41 deleterious(0) probably_damaging(0.996) TCGA-HT-7606-01 12 20833280 20833280 G C PDE3A 3'UTR 0.54 TCGA-HT-7606-01 12 21926252 21926252 T C KCNJ8 Missense_Mutation p.D100G 0.48 deleterious(0.01) benign(0.023) TCGA-HT-7606-01 15 101588788 101588788 A G LRRK1 Silent p.T1075T 0.63 TCGA-HT-7606-01 17 34079638 34079638 C T GAS2L2 Missense_Mutation p.A78T 0.40 tolerated(0.08) probably_damaging(0.94) TCGA-HT-7606-01 17 49248999 49248999 G A NME1-NME2 3'UTR 0.62 TCGA-HT-7606-01 17 65174991 65174991 C T HELZ Missense_Mutation p.R405H 0.32 deleterious(0.04) probably_damaging(0.985) TCGA-HT-7606-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 1.00 deleterious(0) probably_damaging(0.998) TCGA-HT-7606-01 19 11132434 11132434 C A SMARCA4 Missense_Mutation p.H884N 0.41 possibly_damaging(0.826) TCGA-HT-7606-01 19 16487940 16487940 C T EPS15L1 Silent p.P791P 0.37 TCGA-HT-7606-01 1 196953247 196953247 C T CFHR5 Missense_Mutation p.P137L 0.32 tolerated(0.46) benign(0.131) TCGA-HT-7606-01 1 197091601 197091601 G A ASPM Missense_Mutation p.T1172M 0.31 deleterious(0) probably_damaging(0.973) TCGA-HT-7606-01 1 27943402 27943402 G A FGR Silent p.F216F 0.32 TCGA-HT-7606-01 1 33960425 33960425 T G ZSCAN20 Silent p.P827P 0.40 TCGA-HT-7606-01 1 90400076 90400076 C T LRRC8D Silent p.P483P 0.29 TCGA-HT-7606-01 22 19164192 19164192 T G SLC25A1 Missense_Mutation p.K216Q 0.31 tolerated(0.17) benign(0.062) TCGA-HT-7606-01 2 197585312 197585312 C A CCDC150 Missense_Mutation p.Q727K 0.18 tolerated(0.18) probably_damaging(0.972) TCGA-HT-7606-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7606-01 2 219295519 219295519 C T VIL1 Silent p.A340A 0.28 TCGA-HT-7606-01 4 138452008 138452008 T C PCDH18 Missense_Mutation p.E412G 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-HT-7606-01 5 112769423 112769423 C T TSSK1B 3'UTR 0.28 TCGA-HT-7606-01 5 140249016 140249016 G A PCDHA11 Missense_Mutation p.V110M 0.47 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-HT-7606-01 6 348774 348774 G T DUSP22 Silent p.R147R 0.19 TCGA-HT-7606-01 6 40359597 40359597 A G LRFN2 3'UTR 0.27 TCGA-HT-7606-01 7 50513534 50513534 T C FIGNL1 Silent p.A484A 0.39 TCGA-HT-7606-01 7 57509987 57509987 G A ZNF716 5'UTR 0.32 TCGA-HT-7606-01 7 64292367 64292367 A C ZNF138 Missense_Mutation p.K223N 0.52 deleterious(0.02) possibly_damaging(0.686) TCGA-HT-7606-01 7 80374454 80374454 G A SEMA3C Missense_Mutation p.T671M 0.37 tolerated(0.12) benign(0.008) TCGA-HT-7606-01 8 110287672 110287672 A C NUDCD1 Missense_Mutation p.V361G 0.27 deleterious(0) possibly_damaging(0.791) TCGA-HT-7606-01 8 75171665 75171665 C T JPH1 Missense_Mutation p.A405T 0.43 deleterious(0) probably_damaging(0.965) TCGA-HT-7606-01 9 115811700 115811700 T C ZFP37 Silent p.R97R 0.81 TCGA-HT-7606-01 9 135522404 135522404 T C DDX31 Missense_Mutation p.S442G 0.40 tolerated(0.31) benign(0.334) TCGA-HT-7606-01 X 106331986 106331986 C - RBM41 Frame_Shift_Del p.E203Kfs*6 0.27 TCGA-HT-7606-01 X 123525932 123525932 C T TENM1 Silent p.G1886G 0.60 TCGA-HT-7606-01 X 51488448 51488448 G A GSPT2 Missense_Mutation p.V576M 0.52 deleterious(0.01) probably_damaging(0.996) TCGA-HT-7606-01 X 77912924 77912924 G T ZCCHC5 Missense_Mutation p.L332I 0.30 deleterious(0) probably_damaging(0.994) TCGA-HT-7607-01 10 112641024 112641024 G A PDCD4 Missense_Mutation p.G26D 0.15 tolerated_low_confidence(0.07) benign(0.005) TCGA-HT-7607-01 10 121432114 121432114 G A BAG3 Silent p.T285T 0.10 TCGA-HT-7607-01 12 56504773 56504773 C T PA2G4 Missense_Mutation p.R290W 0.21 deleterious(0.04) benign(0.055) TCGA-HT-7607-01 13 111372025 111372025 C T ING1 Nonsense_Mutation p.R339* 0.25 TCGA-HT-7607-01 14 65544747 65544747 C T MAX Missense_Mutation p.R60Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-HT-7607-01 15 33991969 33991969 G A RYR3 Missense_Mutation p.R2105Q 0.11 possibly_damaging(0.661) TCGA-HT-7607-01 15 73616140 73616140 G A HCN4 Missense_Mutation p.A765V 0.15 tolerated(0.13) unknown(0) TCGA-HT-7607-01 15 89400165 89400165 G T ACAN Missense_Mutation p.G1450V 0.19 deleterious(0) possibly_damaging(0.627) TCGA-HT-7607-01 16 21214448 21214448 A G ZP2 Missense_Mutation p.I366T 0.19 deleterious(0.01) benign(0.21) TCGA-HT-7607-01 17 43545910 43545910 C T PLEKHM1 Missense_Mutation p.G325R 0.12 tolerated(0.29) benign(0.004) TCGA-HT-7607-01 19 21300308 21300308 A G ZNF714 Missense_Mutation p.K280E 0.17 tolerated(0.06) benign(0.141) TCGA-HT-7607-01 1 196977871 196977871 C A CFHR5 3'UTR 0.21 TCGA-HT-7607-01 1 196977872 196977872 A C CFHR5 3'UTR 0.21 TCGA-HT-7607-01 1 200880683 200880683 C T C1orf106 Silent p.P354P 0.14 TCGA-HT-7607-01 1 43204166 43204166 G A CLDN19 Missense_Mutation p.T105M 0.07 tolerated(0.19) probably_damaging(1) TCGA-HT-7607-01 1 44170101 44170101 G A KDM4A 3'UTR 0.06 TCGA-HT-7607-01 1 6681634 6681634 C G PHF13 Silent p.S280S 0.20 TCGA-HT-7607-01 2 128917277 128917277 G A UGGT1 Missense_Mutation p.A849T 0.19 tolerated(0.44) benign(0.001) TCGA-HT-7607-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7607-01 2 219296838 219296838 G A VIL1 Missense_Mutation p.D425N 0.11 tolerated(0.27) benign(0.292) TCGA-HT-7607-01 2 85280586 85280586 G A KCMF1 3'UTR 0.31 TCGA-HT-7607-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.17 tolerated(0.06) possibly_damaging(0.801) TCGA-HT-7607-01 5 175779732 175779732 C T KIAA1191 Missense_Mutation p.S76N 0.23 tolerated(0.43) possibly_damaging(0.474) TCGA-HT-7607-01 5 413500 413500 G A AHRR Silent p.T135T 0.21 TCGA-HT-7607-01 6 16295259 16295259 G A GMPR Missense_Mutation p.E294K 0.16 tolerated(0.3) benign(0.016) TCGA-HT-7607-01 6 170052047 170052047 G A WDR27 Missense_Mutation p.S487F 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-HT-7607-01 6 87965029 87965030 AG - ZNF292 Frame_Shift_Del p.K562Tfs*8 0.17 TCGA-HT-7607-01 7 124499166 124499166 C A POT1 Missense_Mutation p.V183L 0.14 deleterious(0) possibly_damaging(0.759) TCGA-HT-7607-01 7 150555011 150555011 G A AOC1 Missense_Mutation p.V485I 0.16 tolerated(1) benign(0.009) TCGA-HT-7607-01 7 98508712 98508712 G A TRRAP Missense_Mutation p.G609R 0.13 benign(0.005) TCGA-HT-7607-01 9 117050747 117050747 G A COL27A1 Missense_Mutation p.E1334K 0.17 unknown(0) TCGA-HT-7607-01 X 12720061 12720061 C T FRMPD4 Silent p.A334A 0.21 TCGA-HT-7607-01 X 133527974 133527974 A G PHF6 Missense_Mutation p.N137S 0.06 tolerated(0.21) benign(0.218) TCGA-HT-7607-01 X 13786333 13786333 C T OFD1 Missense_Mutation p.S973L 0.13 tolerated(0.41) possibly_damaging(0.519) TCGA-HT-7607-01 X 151532994 151532994 G C GABRA3 Missense_Mutation p.L17V 0.20 tolerated_low_confidence(0.29) benign(0.002) TCGA-HT-7607-01 X 153228837 153228837 A C HCFC1 Missense_Mutation p.V184G 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-HT-7608-01 10 118957048 118957048 C T KCNK18 Silent p.L17L 0.05 TCGA-HT-7608-01 12 124111689 124111689 G A EIF2B1 Silent p.H128H 0.06 TCGA-HT-7608-01 12 48174347 48174347 T C SLC48A1 3'UTR 0.38 TCGA-HT-7608-01 12 50036431 50036431 C G PRPF40B Silent p.L697L 0.48 TCGA-HT-7608-01 14 81609744 81609744 G A TSHR Missense_Mutation p.V448I 0.06 deleterious(0) probably_damaging(0.999) TCGA-HT-7608-01 15 83687454 83687457 CTTA - BTBD1 Splice_Site p.X430_splice 0.29 TCGA-HT-7608-01 15 86312652 86312652 G A KLHL25 Silent p.H130H 0.15 TCGA-HT-7608-01 17 10299697 10299697 G A MYH8 Nonsense_Mutation p.Q1535* 0.16 TCGA-HT-7608-01 17 29562639 29562639 C G NF1 Missense_Mutation p.A1240G 0.04 deleterious(0.01) possibly_damaging(0.581) TCGA-HT-7608-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.14 deleterious(0.01) possibly_damaging(0.655) TCGA-HT-7608-01 19 10908139 10908139 G T DNM2 Missense_Mutation p.C427F 0.23 deleterious(0.03) possibly_damaging(0.723) TCGA-HT-7608-01 19 41763470 41763470 G A AXL Missense_Mutation p.E757K 0.05 tolerated(0.05) probably_damaging(0.979) TCGA-HT-7608-01 19 6502188 6502188 G A TUBB4A Silent p.C12C 0.15 TCGA-HT-7608-01 1 156104684 156104684 A G LMNA Missense_Mutation p.D243G 0.20 tolerated(0.05) benign(0.022) TCGA-HT-7608-01 1 223567391 223567391 C T C1orf65 Missense_Mutation p.R192W 0.43 deleterious(0) possibly_damaging(0.787) TCGA-HT-7608-01 1 36859258 36859258 C T LSM10 3'UTR 0.19 TCGA-HT-7608-01 1 78422268 78422269 - T FUBP1 Frame_Shift_Ins p.T565Nfs*2 0.40 TCGA-HT-7608-01 21 43161859 43161859 G A RIPK4 Silent p.N498N 0.08 TCGA-HT-7608-01 21 45844804 45844804 G A TRPM2 Missense_Mutation p.A1207T 0.18 tolerated(0.52) benign(0.002) TCGA-HT-7608-01 22 22322990 22322990 C A TOP3B Splice_Site p.X246_splice 0.23 TCGA-HT-7608-01 22 35947956 35947956 C T RASD2 Silent p.D226D 0.31 TCGA-HT-7608-01 22 42016824 42016825 - A DESI1 Frame_Shift_Ins p.Y7Lfs*41 0.15 TCGA-HT-7608-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7608-01 3 114026861 114026861 A G TIGIT Silent p.A206A 0.33 TCGA-HT-7608-01 3 114058211 114058211 T G ZBTB20 Missense_Mutation p.K623Q 0.04 deleterious(0.02) probably_damaging(0.987) TCGA-HT-7608-01 4 25677957 25677957 G A SLC34A2 Silent p.R553R 0.04 TCGA-HT-7608-01 4 4199681 4199681 G A OTOP1 Missense_Mutation p.R294C 0.30 deleterious(0) probably_damaging(0.999) TCGA-HT-7608-01 6 52103580 52103580 C T IL17F Missense_Mutation p.V68I 0.41 tolerated(0.76) benign(0.001) TCGA-HT-7608-01 7 100799992 100799992 G C AP1S1 Missense_Mutation p.A41P 0.17 tolerated(0.06) benign(0.026) TCGA-HT-7608-01 8 42196045 42196045 T C POLB 5'UTR 0.36 TCGA-HT-7608-01 X 49063294 49063294 C T CACNA1F Missense_Mutation p.A1763T 0.07 tolerated(0.7) benign(0.001) TCGA-HT-7609-01 11 57144243 57144243 G A PRG3 3'UTR 0.46 TCGA-HT-7609-01 12 53865444 53865444 G A PCBP2 Missense_Mutation p.R306H 0.11 tolerated(0.06) benign(0.02) TCGA-HT-7609-01 12 57601869 57601869 G A LRP1 Missense_Mutation p.G3970R 0.38 probably_damaging(0.963) TCGA-HT-7609-01 12 97136314 97136314 C A C12orf55 Missense_Mutation p.A2390E 0.42 deleterious(0.03) benign(0) TCGA-HT-7609-01 13 25275010 25275010 C T ATP12A Missense_Mutation p.R617W 0.05 deleterious(0.02) possibly_damaging(0.608) TCGA-HT-7609-01 14 96798962 96798962 A G ATG2B Missense_Mutation p.M413T 0.10 tolerated(0.07) possibly_damaging(0.769) TCGA-HT-7609-01 15 99678265 99678265 G A TTC23 Missense_Mutation p.P432S 0.09 tolerated(0.23) benign(0.025) TCGA-HT-7609-01 17 38926339 38926339 G A KRT26 Silent p.N239N 0.50 TCGA-HT-7609-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.50 tolerated(0.13) possibly_damaging(0.631) TCGA-HT-7609-01 17 7578176 7578176 C T TP53 Splice_Site p.X224_splice 0.38 TCGA-HT-7609-01 19 42600387 42600387 G A POU2F2 Silent p.T170T 0.21 TCGA-HT-7609-01 19 50720927 50720927 A G MYH14 Missense_Mutation p.Y154C 0.42 deleterious(0) probably_damaging(1) TCGA-HT-7609-01 19 54782405 54782405 C A LILRB2 Missense_Mutation p.G323C 0.10 tolerated(0.1) possibly_damaging(0.592) TCGA-HT-7609-01 1 153654206 153654206 C T NPR1 Silent p.H354H 0.05 TCGA-HT-7609-01 1 201382170 201382170 T C TNNI1 Missense_Mutation p.N90S 0.05 tolerated(0.48) possibly_damaging(0.751) TCGA-HT-7609-01 2 121991692 121991692 G A TFCP2L1 Silent p.D391D 0.09 TCGA-HT-7609-01 2 179341854 179341854 A G FKBP7 Missense_Mutation p.M103T 0.39 deleterious(0) probably_damaging(0.998) TCGA-HT-7609-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7609-01 2 239059501 239059501 T C KLHL30 Missense_Mutation p.L511P 0.31 deleterious(0) probably_damaging(0.995) TCGA-HT-7609-01 4 25677849 25677849 G A SLC34A2 Silent p.G517G 0.41 TCGA-HT-7609-01 5 108717302 108717302 A C PJA2 Missense_Mutation p.F45C 0.10 deleterious(0) probably_damaging(0.994) TCGA-HT-7609-01 5 121188111 121188111 C T FTMT Silent p.D151D 0.08 TCGA-HT-7609-01 5 150565607 150565607 G A CCDC69 Nonsense_Mutation p.R158* 0.09 TCGA-HT-7609-01 5 80785076 80785076 G T SSBP2 Missense_Mutation p.P142H 0.16 deleterious(0.01) benign(0.049) TCGA-HT-7609-01 6 102372528 102372528 G A GRIK2 Missense_Mutation p.V601M 0.08 tolerated(0.07) probably_damaging(0.952) TCGA-HT-7609-01 6 151054744 151054744 T C PLEKHG1 5'UTR 0.45 TCGA-HT-7609-01 7 111624387 111624387 T C DOCK4 Missense_Mutation p.I175V 0.31 tolerated(0.07) benign(0.011) TCGA-HT-7609-01 8 113504737 113504737 T C CSMD3 Silent p.R1753R 0.07 TCGA-HT-7609-01 8 145066754 145066754 T A GRINA Missense_Mutation p.L315Q 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-HT-7609-01 X 123519791 123519791 C A TENM1 Missense_Mutation p.G1938C 0.06 deleterious(0) probably_damaging(1) TCGA-HT-7609-01 X 128710473 128710473 C G OCRL Missense_Mutation p.L687V 0.87 deleterious(0) probably_damaging(0.998) TCGA-HT-7609-01 X 134988660 134988660 G A SAGE1 Missense_Mutation p.R229H 0.03 tolerated(0.13) benign(0.001) TCGA-HT-7609-01 X 20156729 20156729 T C EIF1AX Missense_Mutation p.K10E 0.88 deleterious(0) unknown(0) TCGA-HT-7609-01 X 70524875 70524875 G A ITGB1BP2 Missense_Mutation p.V293I 0.41 tolerated(0.28) benign(0.185) TCGA-HT-7609-01 X 99661766 99661766 G A PCDH19 Silent p.G610G 0.08 TCGA-HT-7610-01 10 135170199 135170199 A G FUOM Missense_Mutation p.L90P 0.18 deleterious(0.04) probably_damaging(0.993) TCGA-HT-7610-01 14 97031339 97031339 T G PAPOLA Missense_Mutation p.N730K 0.30 deleterious(0.05) benign(0.002) TCGA-HT-7610-01 16 202926 202926 T C HBZ Silent p.T6T 0.32 TCGA-HT-7610-01 17 38936093 38936093 G A KRT27 Silent p.C235C 0.24 TCGA-HT-7610-01 17 7474041 7474041 C T SENP3 Nonsense_Mutation p.R508* 0.25 TCGA-HT-7610-01 17 7534543 7534543 C A SHBG Missense_Mutation p.S140Y 0.36 tolerated(0.06) probably_damaging(0.998) TCGA-HT-7610-01 17 7577593 7577593 T G TP53 Missense_Mutation p.T230P 0.26 deleterious(0) probably_damaging(0.979) TCGA-HT-7610-01 17 7578507 7578507 G C TP53 Missense_Mutation p.C141W 0.49 deleterious(0) probably_damaging(1) TCGA-HT-7610-01 19 57889603 57889603 T C ZNF547 3'UTR 0.54 TCGA-HT-7610-01 1 169519050 169519050 G A F5 Nonsense_Mutation p.Q534* 0.10 TCGA-HT-7610-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7610-01 2 230668911 230668911 G A TRIP12 Nonsense_Mutation p.R820* 0.32 TCGA-HT-7610-01 2 44047075 44047075 A G ABCG5 Missense_Mutation p.L543P 0.16 deleterious(0) probably_damaging(0.981) TCGA-HT-7610-01 3 130732931 130732931 C T ASTE1 Silent p.E670E 0.16 TCGA-HT-7610-01 4 62813869 62813869 C T LPHN3 Missense_Mutation p.R826C 0.20 deleterious(0) possibly_damaging(0.832) TCGA-HT-7610-01 7 100815315 100815315 G A NAT16 3'UTR 0.38 TCGA-HT-7610-01 8 36721928 36721928 C A KCNU1 Nonsense_Mutation p.S633* 0.05 TCGA-HT-7610-01 8 37698691 37698691 C T GPR124 Silent p.C945C 0.10 TCGA-HT-7610-01 9 35108164 35108164 G A FAM214B Silent p.Y36Y 0.24 TCGA-HT-7610-01 X 123196967 123196967 A T STAG2 Missense_Mutation p.Y578F 0.32 tolerated(0.38) benign(0.254) TCGA-HT-7610-01 X 39931690 39931690 G A BCOR Missense_Mutation p.A970V 0.14 deleterious(0) probably_damaging(0.995) TCGA-HT-7610-01 X 76890083 76890083 A C ATRX Splice_Site p.X1603_splice 0.33 TCGA-HT-7611-01 11 64603009 64603009 C T CDC42BPG Missense_Mutation p.A615T 0.10 tolerated(0.52) benign(0.003) TCGA-HT-7611-01 12 2983282 2983283 GA - FOXM1 Frame_Shift_Del p.L121Pfs*9 0.13 TCGA-HT-7611-01 13 39564828 39564828 G A STOML3 Nonsense_Mutation p.Q11* 0.17 TCGA-HT-7611-01 13 39564893 39564893 T G STOML3 5'UTR 0.06 TCGA-HT-7611-01 14 101200659 101200659 G A DLK1 Missense_Mutation p.R193H 0.06 tolerated(0.17) possibly_damaging(0.646) TCGA-HT-7611-01 14 106368513 106368513 G A IGHD5-12 Missense_Mutation p.T6M 0.41 unknown(0) TCGA-HT-7611-01 15 25425489 25425489 C T SNORD115-6 5'Flank 0.42 TCGA-HT-7611-01 15 34356257 34356257 A G CHRM5 Missense_Mutation p.I447V 0.35 deleterious(0) probably_damaging(0.998) TCGA-HT-7611-01 15 40915064 40915064 G A CASC5 Missense_Mutation p.D894N 0.10 tolerated(0.29) benign(0.006) TCGA-HT-7611-01 15 76067993 76067993 G A RP11-24M17.5 RNA 0.15 TCGA-HT-7611-01 16 19883181 19883181 G C GPRC5B Silent p.A329A 0.10 TCGA-HT-7611-01 16 19883826 19883826 G T GPRC5B Silent p.I114I 0.16 TCGA-HT-7611-01 16 5094571 5094571 C T C16orf89 3'UTR 0.55 TCGA-HT-7611-01 16 53348818 53348818 T A CHD9 Missense_Mutation p.D2466E 0.13 unknown(0) TCGA-HT-7611-01 17 31268081 31268081 A G TMEM98 3'UTR 0.53 TCGA-HT-7611-01 17 41166236 41166236 G A IFI35 Missense_Mutation p.G263R 0.56 deleterious(0) probably_damaging(0.999) TCGA-HT-7611-01 17 7577081 7577081 T C TP53 Missense_Mutation p.E286G 0.70 deleterious(0) probably_damaging(0.988) TCGA-HT-7611-01 17 7578266 7578266 T A TP53 Missense_Mutation p.I195F 0.08 deleterious(0) probably_damaging(1) TCGA-HT-7611-01 19 15734031 15734031 G A CYP4F8 RNA 0.48 TCGA-HT-7611-01 19 40366226 40366226 C T FCGBP Missense_Mutation p.V4670M 0.22 probably_damaging(0.93) TCGA-HT-7611-01 1 1396282 1396282 C A ATAD3C Missense_Mutation p.A322D 0.16 deleterious(0.03) benign(0.111) TCGA-HT-7611-01 1 152573380 152573380 G A LCE3C Missense_Mutation p.R58K 0.88 tolerated_low_confidence(0.07) unknown(0) TCGA-HT-7611-01 1 153633756 153633756 C T SNAPIN Silent p.P130P 0.17 TCGA-HT-7611-01 1 27056286 27056286 C T ARID1A Nonsense_Mutation p.Q428* 0.12 TCGA-HT-7611-01 1 33402666 33402666 C T RNF19B Missense_Mutation p.C647Y 0.41 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-HT-7611-01 2 179417788 179417788 G A TTN Nonsense_Mutation p.R29947* 0.16 TCGA-HT-7611-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HT-7611-01 2 236626276 236626276 G T AGAP1 Nonsense_Mutation p.E100* 0.22 TCGA-HT-7611-01 2 236626277 236626277 A C AGAP1 Missense_Mutation p.E100A 0.22 deleterious(0) probably_damaging(0.992) TCGA-HT-7611-01 2 54853094 54853094 C T SPTBN1 Missense_Mutation p.A456V 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-HT-7611-01 5 161918 161918 A G PLEKHG4B Silent p.L480L 0.20 TCGA-HT-7611-01 5 82937364 82937364 T A HAPLN1 Missense_Mutation p.D339V 0.05 deleterious(0.01) probably_damaging(0.956) TCGA-HT-7611-01 6 24566850 24566850 C A KIAA0319 Missense_Mutation p.R756L 0.39 deleterious(0) probably_damaging(0.982) TCGA-HT-7611-01 6 26104327 26104327 T C HIST1H4C Missense_Mutation p.I51T 0.16 deleterious(0.02) possibly_damaging(0.833) TCGA-HT-7611-01 7 150556078 150556078 A G AOC1 Missense_Mutation p.M600V 0.32 tolerated(0.52) benign(0.025) TCGA-HT-7611-01 9 125377695 125377695 C T OR1Q1 Missense_Mutation p.R227W 0.21 deleterious(0.01) benign(0.013) TCGA-HT-7611-01 9 136131727 136131727 T C RP11-430N14.4 5'Flank 0.45 TCGA-HT-7611-01 9 35057052 35057052 G A VCP 3'UTR 0.11 TCGA-HT-7611-01 9 77377091 77377091 A G TRPM6 Missense_Mutation p.L1499P 0.12 tolerated_low_confidence(0.1) possibly_damaging(0.451) TCGA-HT-7611-01 X 39932880 39932880 G T BCOR Silent p.A573A 0.08 TCGA-HT-7611-01 X 76938601 76938605 AATTT - ATRX Frame_Shift_Del p.K715Afs*4 0.20 TCGA-HT-7616-01 10 43622043 43622043 G A RET Silent p.A1020A 0.42 TCGA-HT-7616-01 11 117710436 117710436 C A FXYD6 Intron 0.09 TCGA-HT-7616-01 11 48511063 48511063 C A OR4A47 Missense_Mutation p.S240Y 0.08 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-HT-7616-01 12 101573832 101573832 G A SLC5A8 Missense_Mutation p.A403V 0.27 deleterious(0) probably_damaging(0.983) TCGA-HT-7616-01 12 119583235 119583235 C T SRRM4 Missense_Mutation p.P274L 0.31 tolerated_low_confidence(0.07) possibly_damaging(0.764) TCGA-HT-7616-01 12 2967790 2967790 G A FOXM1 3'UTR 0.05 TCGA-HT-7616-01 12 45000951 45000951 C T NELL2 Splice_Site p.X605_splice 0.12 TCGA-HT-7616-01 12 57487218 57487218 G A NAB2 Silent p.P435P 0.14 TCGA-HT-7616-01 12 72094645 72094645 G A TMEM19 Missense_Mutation p.S294N 0.04 tolerated(0.31) possibly_damaging(0.787) TCGA-HT-7616-01 14 105409805 105409805 C T AHNAK2 Missense_Mutation p.A3995T 0.37 benign(0.249) TCGA-HT-7616-01 14 89044394 89044394 G A ZC3H14 Missense_Mutation p.E397K 0.40 tolerated(0.12) probably_damaging(0.968) TCGA-HT-7616-01 15 20643888 20643888 T C HERC2P3 RNA 0.23 TCGA-HT-7616-01 16 57732824 57732824 C G CCDC135 Missense_Mutation p.P89R 0.15 tolerated(0.57) possibly_damaging(0.481) TCGA-HT-7616-01 17 58571849 58571849 G - APPBP2 Frame_Shift_Del p.I120Ffs*7 0.24 TCGA-HT-7616-01 19 33334813 33334813 A T SLC7A9 Missense_Mutation p.L341H 0.38 deleterious(0) probably_damaging(0.994) TCGA-HT-7616-01 19 36631958 36631958 C G CAPNS1 Silent p.G15G 0.14 TCGA-HT-7616-01 19 42795390 42795390 C T CIC Nonsense_Mutation p.Q824* 0.20 TCGA-HT-7616-01 19 49527284 49527284 C T CGB 5'UTR 0.53 TCGA-HT-7616-01 19 49651494 49651494 A G PPFIA3 Missense_Mutation p.K997R 0.55 tolerated(0.07) probably_damaging(0.997) TCGA-HT-7616-01 1 156845863 156845863 C T NTRK1 Intron 0.26 TCGA-HT-7616-01 1 157516858 157516858 T C FCRL5 Missense_Mutation p.Y61C 0.30 tolerated(0.06) probably_damaging(0.926) TCGA-HT-7616-01 1 179316745 179316745 T G SOAT1 Missense_Mutation p.I376M 0.08 tolerated(1) benign(0.038) TCGA-HT-7616-01 1 235940414 235940414 G T LYST Silent p.G1803G 0.26 TCGA-HT-7616-01 1 237666709 237666709 G T RYR2 Missense_Mutation p.E839D 0.18 benign(0.444) TCGA-HT-7616-01 1 26311003 26311003 A G PAFAH2 Missense_Mutation p.F120L 0.78 tolerated(0.09) benign(0.065) TCGA-HT-7616-01 1 35452678 35452678 C A ZMYM6 3'UTR 0.55 TCGA-HT-7616-01 1 65141193 65141193 T C CACHD1 Missense_Mutation p.L895P 0.03 tolerated(0.05) possibly_damaging(0.549) TCGA-HT-7616-01 1 78432569 78432570 - G FUBP1 Frame_Shift_Ins p.D139* 0.28 TCGA-HT-7616-01 1 79470843 79470843 G C ELTD1 Silent p.L28L 0.75 TCGA-HT-7616-01 1 95307657 95307657 G A SLC44A3 Missense_Mutation p.A288T 0.12 deleterious(0) probably_damaging(0.984) TCGA-HT-7616-01 20 62273610 62273610 C T STMN3 Missense_Mutation p.E112K 0.21 deleterious(0.02) possibly_damaging(0.618) TCGA-HT-7616-01 20 944643 944643 T C RSPO4 Missense_Mutation p.E177G 0.09 deleterious(0.01) probably_damaging(0.917) TCGA-HT-7616-01 21 42749752 42749752 A T MX2 Nonsense_Mutation p.K96* 0.25 TCGA-HT-7616-01 21 46924342 46924342 G T COL18A1 Missense_Mutation p.D1094Y 0.08 probably_damaging(0.991) TCGA-HT-7616-01 2 172337525 172337525 A C DCAF17 Silent p.L488L 0.04 TCGA-HT-7616-01 2 179455636 179455636 C T TTN Silent p.P20272P 0.31 TCGA-HT-7616-01 2 179591914 179591914 C G TTN Missense_Mutation p.Q6726H 0.25 TCGA-HT-7616-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7616-01 2 24299092 24299092 A T SF3B14 Missense_Mutation p.M3K 0.32 deleterious(0.02) benign(0.15) TCGA-HT-7616-01 2 27438348 27438348 G A ATRAID Silent p.L155L 0.35 TCGA-HT-7616-01 2 27505759 27505759 G A TRIM54 Missense_Mutation p.V54I 0.37 tolerated(1) benign(0.003) TCGA-HT-7616-01 3 197803880 197803880 C T ANKRD18DP RNA 0.08 TCGA-HT-7616-01 3 48600467 48600467 G A UCN2 Missense_Mutation p.R31C 0.12 tolerated(0.1) benign(0) TCGA-HT-7616-01 5 140718979 140718979 G T PCDHGA2 Silent p.T147T 0.05 TCGA-HT-7616-01 5 79026993 79026993 C T CMYA5 Missense_Mutation p.A802V 0.31 benign(0.003) TCGA-HT-7616-01 6 144507945 144507945 G A STX11 Missense_Mutation p.D61N 0.29 deleterious(0) probably_damaging(0.995) TCGA-HT-7616-01 6 146271526 146271526 G A SHPRH Nonsense_Mutation p.Q286* 0.29 TCGA-HT-7616-01 6 157405973 157405973 C - ARID1B Frame_Shift_Del p.P739Lfs*6 0.25 TCGA-HT-7616-01 6 159618496 159618496 T C FNDC1 Missense_Mutation p.L48P 0.29 tolerated(0.07) unknown(0) TCGA-HT-7616-01 6 6266847 6266847 C T F13A1 Missense_Mutation p.R172Q 0.33 deleterious(0.02) probably_damaging(0.992) TCGA-HT-7616-01 7 103018895 103018895 C G SLC26A5 Missense_Mutation p.A595P 0.09 tolerated(0.27) benign(0.001) TCGA-HT-7616-01 7 103018911 103018911 G T SLC26A5 Missense_Mutation p.N589K 0.10 tolerated(1) benign(0.01) TCGA-HT-7616-01 7 106851543 106851543 C T COG5 Splice_Site p.X796_splice 0.30 TCGA-HT-7616-01 7 119914854 119914854 G A KCND2 Silent p.Q56Q 0.05 TCGA-HT-7616-01 8 53569559 53569559 G C RB1CC1 Missense_Mutation p.Q944E 0.34 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-HT-7616-01 9 132401579 132401580 CT - ASB6 Frame_Shift_Del p.S138* 0.28 TCGA-HT-7616-01 9 977181 977181 C G DMRT3 Silent p.L60L 0.09 TCGA-HT-7616-01 X 18665417 18665417 C G RS1 Missense_Mutation p.G74R 0.23 deleterious(0.01) possibly_damaging(0.746) TCGA-HT-7616-01 X 3241681 3241681 C T MXRA5 Missense_Mutation p.R682H 0.62 tolerated(0.21) benign(0.019) TCGA-HT-7620-01 10 37419199 37419199 G A ANKRD30A Missense_Mutation p.V79I 0.18 tolerated(0.42) benign(0) TCGA-HT-7620-01 12 109519737 109519737 G A USP30 Splice_Site p.X261_splice 0.19 TCGA-HT-7620-01 12 2968215 2968215 C T FOXM1 Silent p.T665T 0.17 TCGA-HT-7620-01 15 75042314 75042314 C T CYP1A2 Missense_Mutation p.R79C 0.26 deleterious(0.01) benign(0.049) TCGA-HT-7620-01 16 23080559 23080559 C T USP31 Missense_Mutation p.R956H 0.10 deleterious_low_confidence(0.05) benign(0.004) TCGA-HT-7620-01 16 58324928 58324928 G T PRSS54 Missense_Mutation p.H66Q 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-HT-7620-01 19 46173941 46173941 C G GIPR Missense_Mutation p.R41G 0.15 tolerated(0.32) benign(0.345) TCGA-HT-7620-01 1 196648911 196648911 C T CFH Missense_Mutation p.P260S 0.14 deleterious(0) possibly_damaging(0.743) TCGA-HT-7620-01 1 246810446 246810446 A G CNST Missense_Mutation p.K315E 0.25 tolerated(1) benign(0.001) TCGA-HT-7620-01 1 78429792 78429792 A T FUBP1 Nonsense_Mutation p.C332* 0.23 TCGA-HT-7620-01 20 37634881 37634881 C T DHX35 Silent p.Y368Y 0.20 TCGA-HT-7620-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7620-01 2 73478419 73478419 C G CCT7 Nonsense_Mutation p.Y423* 0.23 TCGA-HT-7620-01 3 178916938 178916940 GAA - PIK3CA In_Frame_Del p.E110del 0.22 TCGA-HT-7620-01 4 114436309 114436309 G A CAMK2D Silent p.A245A 0.19 TCGA-HT-7620-01 5 153175109 153175109 T C GRIA1 Intron 0.17 TCGA-HT-7620-01 5 176825109 176825109 G A SLC34A1 Missense_Mutation p.R581H 0.22 tolerated(0.35) benign(0.001) TCGA-HT-7620-01 5 6663021 6663021 G A SRD5A1 Missense_Mutation p.A219T 0.24 tolerated(0.41) benign(0.206) TCGA-HT-7620-01 6 129823889 129823889 C T LAMA2 Missense_Mutation p.A2777V 0.14 tolerated(0.17) possibly_damaging(0.736) TCGA-HT-7620-01 6 28540669 28540669 G A SCAND3 Silent p.C999C 0.18 TCGA-HT-7620-01 6 50807962 50807962 C A TFAP2B Missense_Mutation p.T345K 0.13 tolerated(0.21) benign(0.21) TCGA-HT-7620-01 7 1539964 1539964 C T INTS1 Missense_Mutation p.E130K 0.13 deleterious(0.01) possibly_damaging(0.778) TCGA-HT-7620-01 X 154508571 154508571 A C CLIC2 Nonsense_Mutation p.L150* 0.53 TCGA-HT-7676-01 10 45799361 45799361 G A OR13A1 Silent p.C170C 0.40 TCGA-HT-7676-01 12 132624720 132624720 C T DDX51 Silent p.A566A 0.34 TCGA-HT-7676-01 12 56351068 56351068 G A PMEL Missense_Mutation p.A340V 0.38 tolerated(1) benign(0.001) TCGA-HT-7676-01 15 40587142 40587142 G A PLCB2 Missense_Mutation p.T634M 0.40 deleterious(0) probably_damaging(1) TCGA-HT-7676-01 15 44038676 44038676 C T PDIA3 5'UTR 0.47 TCGA-HT-7676-01 15 90768923 90768923 G A SEMA4B Missense_Mutation p.V518I 0.44 tolerated(0.25) benign(0.06) TCGA-HT-7676-01 16 70064963 70064965 CAA TT MIR1972-2 3'Flank 0.36 TCGA-HT-7676-01 17 3385079 3385079 T C ASPA Missense_Mutation p.F140S 0.24 tolerated(0.11) benign(0.431) TCGA-HT-7676-01 17 39041356 39041356 G A KRT20 Missense_Mutation p.R28C 0.42 deleterious(0) possibly_damaging(0.642) TCGA-HT-7676-01 17 46692080 46692080 G A HOXB8 5'UTR 0.59 TCGA-HT-7676-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.83 deleterious(0) probably_damaging(1) TCGA-HT-7676-01 18 72913406 72913406 C T ZADH2 Missense_Mutation p.V367I 0.36 deleterious(0.04) benign(0.152) TCGA-HT-7676-01 1 176734861 176734861 C T PAPPA2 Missense_Mutation p.A1404V 0.12 deleterious(0.04) benign(0.006) TCGA-HT-7676-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7676-01 3 185769871 185769871 T C ETV5 Missense_Mutation p.D420G 0.10 deleterious(0) probably_damaging(0.968) TCGA-HT-7676-01 5 423984 423984 C G AHRR Silent p.L204L 0.48 TCGA-HT-7676-01 6 158014166 158014166 G C ZDHHC14 Missense_Mutation p.D185H 0.04 deleterious(0) probably_damaging(1) TCGA-HT-7676-01 6 84896080 84896080 T C KIAA1009 Silent p.S457S 0.33 TCGA-HT-7676-01 8 125113341 125113341 G T FER1L6 Missense_Mutation p.W1629C 0.37 deleterious(0) probably_damaging(1) TCGA-HT-7676-01 8 81577128 81577128 C T ZNF704 Silent p.T283T 0.40 TCGA-HT-7676-01 X 76855230 76855230 G - ATRX Frame_Shift_Del p.M1920* 0.53 TCGA-HT-7677-01 10 96602618 96602618 G A CYP2C19 Missense_Mutation p.R329H 0.11 tolerated(0.27) benign(0.007) TCGA-HT-7677-01 11 5603034 5603034 G A OR52B6 Missense_Mutation p.V310I 0.42 tolerated(1) benign(0.001) TCGA-HT-7677-01 12 111099098 111099098 G C HVCN1 Silent p.P59P 0.24 TCGA-HT-7677-01 12 123214713 123214713 G A HCAR1 Silent p.A58A 0.38 TCGA-HT-7677-01 12 125397147 125397147 T C UBC Missense_Mutation p.K391E 0.07 deleterious(0.03) possibly_damaging(0.906) TCGA-HT-7677-01 12 16036493 16036493 G A STRAP Missense_Mutation p.R44H 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-HT-7677-01 12 52822506 52822506 C T KRT75 Missense_Mutation p.A353T 0.07 deleterious(0) probably_damaging(0.997) TCGA-HT-7677-01 12 6499942 6499942 G A LTBR Missense_Mutation p.E383K 0.04 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-HT-7677-01 12 7083747 7083747 C T EMG1 Nonsense_Mutation p.R101* 0.32 TCGA-HT-7677-01 15 20170223 20170223 C A IGHV1OR15-9 Missense_Mutation p.A17S 0.42 deleterious(0.02) benign(0.041) TCGA-HT-7677-01 15 75761319 75761319 A C PTPN9 Missense_Mutation p.F525V 0.41 deleterious(0) probably_damaging(0.953) TCGA-HT-7677-01 16 2223509 2223509 T C TRAF7 Missense_Mutation p.L347P 0.38 deleterious(0) possibly_damaging(0.613) TCGA-HT-7677-01 16 72057134 72057134 G A DHODH Missense_Mutation p.R297H 0.04 tolerated(0.11) benign(0.028) TCGA-HT-7677-01 16 88705399 88705399 G A IL17C Missense_Mutation p.G6D 0.19 deleterious_low_confidence(0.04) unknown(0) TCGA-HT-7677-01 17 74465889 74465889 G A AANAT Missense_Mutation p.R199H 0.16 tolerated(0.2) benign(0.002) TCGA-HT-7677-01 18 28650804 28650804 G A DSC2 Missense_Mutation p.T713M 0.19 deleterious(0.01) probably_damaging(0.981) TCGA-HT-7677-01 19 1255053 1255053 C T MIDN Silent p.T283T 0.06 TCGA-HT-7677-01 19 14991283 14991284 TT - OR7A17 Frame_Shift_Del p.K295Rfs*23 0.17 TCGA-HT-7677-01 19 17664404 17664404 C T FAM129C 3'UTR 0.07 TCGA-HT-7677-01 19 17886277 17886277 G A FCHO1 Missense_Mutation p.V320M 0.10 deleterious(0) probably_damaging(0.956) TCGA-HT-7677-01 19 42799051 42799051 G T CIC Missense_Mutation p.R1512L 0.69 probably_damaging(0.931) TCGA-HT-7677-01 19 49143394 49143394 G A CA11 Silent p.A143A 0.06 TCGA-HT-7677-01 1 11918924 11918924 G T NPPB 5'UTR 0.12 TCGA-HT-7677-01 1 169524423 169524423 T C F5 Missense_Mutation p.D372G 0.13 deleterious(0) probably_damaging(0.975) TCGA-HT-7677-01 1 196749062 196749062 C T CFHR3 Missense_Mutation p.T130M 0.35 tolerated(0.22) benign(0.001) TCGA-HT-7677-01 1 3647559 3647559 G A TP73 Missense_Mutation p.A472T 0.10 tolerated(0.5) benign(0) TCGA-HT-7677-01 1 78430643 78430643 C - FUBP1 Frame_Shift_Del p.G216Efs*6 0.38 TCGA-HT-7677-01 21 33684248 33684248 G A MRAP Missense_Mutation p.V154I 0.39 tolerated_low_confidence(0.22) benign(0.003) TCGA-HT-7677-01 2 165948831 165948831 G C SCN3A Silent p.L1580L 0.39 TCGA-HT-7677-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7677-01 2 220088460 220088460 G A ATG9A Silent p.S482S 0.06 TCGA-HT-7677-01 2 230638967 230638968 CT - TRIP12 Frame_Shift_Del p.L1773Tfs*15 0.34 TCGA-HT-7677-01 2 54859857 54859857 A G SPTBN1 Missense_Mutation p.N1240S 0.05 tolerated(0.05) benign(0.168) TCGA-HT-7677-01 3 14862573 14862573 G A FGD5 Silent p.T665T 0.44 TCGA-HT-7677-01 3 39227360 39227360 G A XIRP1 Missense_Mutation p.R1193W 0.10 tolerated(0.22) benign(0.001) TCGA-HT-7677-01 4 186347037 186347037 G A UFSP2 5'UTR 0.25 TCGA-HT-7677-01 4 189061052 189061052 G A TRIML1 Missense_Mutation p.A114T 0.05 tolerated(0.13) benign(0.002) TCGA-HT-7677-01 4 84230039 84230039 G C HPSE Silent p.G350G 0.57 TCGA-HT-7677-01 5 161277683 161277683 C T GABRA1 Intron 0.42 TCGA-HT-7677-01 6 10529044 10529044 C T GCNT2 5'UTR 0.46 TCGA-HT-7677-01 6 133783471 133783471 A T EYA4 Splice_Site p.X146_splice 0.12 TCGA-HT-7677-01 6 157469999 157469999 G - ARID1B Frame_Shift_Del p.P933Rfs*6 0.29 TCGA-HT-7677-01 6 31506618 31506618 C T DDX39B Silent p.V118V 0.10 TCGA-HT-7677-01 6 88229954 88229954 C A RARS2 Missense_Mutation p.K352N 0.14 tolerated(0.62) benign(0.001) TCGA-HT-7677-01 6 97053913 97053913 A G FHL5 Missense_Mutation p.K157R 0.11 tolerated(0.22) benign(0.047) TCGA-HT-7677-01 7 128492959 128492959 C T FLNC Missense_Mutation p.P2028S 0.07 deleterious(0) probably_damaging(0.997) TCGA-HT-7677-01 7 34724169 34724169 G A NPSR1 Silent p.E51E 0.35 TCGA-HT-7677-01 7 50686874 50686874 T - GRB10 Frame_Shift_Del p.N257Ifs*3 0.30 TCGA-HT-7677-01 8 21927431 21927431 C T DMTN Missense_Mutation p.P145L 0.05 deleterious(0.03) probably_damaging(0.994) TCGA-HT-7677-01 8 27891083 27891083 G T NUGGC Silent p.I581I 0.09 TCGA-HT-7677-01 8 48792204 48792204 G C PRKDC Missense_Mutation p.L1694V 0.17 benign(0.076) TCGA-HT-7677-01 8 55372386 55372386 A G SOX17 Missense_Mutation p.D359G 0.25 deleterious(0) benign(0.338) TCGA-HT-7677-01 8 72111553 72111553 G A EYA1 3'UTR 0.24 TCGA-HT-7677-01 9 22451627 22451627 C T DMRTA1 Missense_Mutation p.P411L 0.28 deleterious(0) probably_damaging(0.999) TCGA-HT-7680-01 19 50105084 50105084 C T PRR12 Missense_Mutation p.T1561M 0.38 unknown(0) TCGA-HT-7680-01 1 156823629 156823629 C T INSRR Silent p.L184L 0.37 TCGA-HT-7680-01 1 160811160 160811160 G A CD244 Silent p.Y170Y 0.33 TCGA-HT-7680-01 X 118771068 118771068 C T SEPT6 Missense_Mutation p.R293Q 0.03 tolerated(0.23) possibly_damaging(0.588) TCGA-HT-7681-01 12 49416133 49416133 G A KMT2D Nonsense_Mutation p.R5448* 0.45 TCGA-HT-7681-01 13 32911765 32911765 A C BRCA2 Missense_Mutation p.L1091F 0.30 deleterious(0.02) possibly_damaging(0.843) TCGA-HT-7681-01 14 105174321 105174321 C T INF2 Missense_Mutation p.P573S 0.33 deleterious(0.05) unknown(0) TCGA-HT-7681-01 14 20692083 20692083 G A OR11H6 Missense_Mutation p.R72Q 0.19 tolerated(0.18) benign(0.02) TCGA-HT-7681-01 14 55236839 55236840 - A SAMD4A Frame_Shift_Ins p.R541Kfs*111 0.21 TCGA-HT-7681-01 14 76668100 76668100 G A GPATCH2L Nonsense_Mutation p.W452* 0.19 TCGA-HT-7681-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-HT-7681-01 17 66914237 66914237 G A ABCA8 Silent p.R626R 0.08 TCGA-HT-7681-01 17 72469878 72469878 G A CD300A Missense_Mutation p.A82T 0.05 deleterious(0) benign(0.025) TCGA-HT-7681-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.32 probably_damaging(1) TCGA-HT-7681-01 1 151258917 151258917 A G ZNF687 Silent p.E50E 0.38 TCGA-HT-7681-01 1 201966606 201966606 C T RNPEP Silent p.N338N 0.06 TCGA-HT-7681-01 20 17462592 17462592 G A PCSK2 Silent p.P598P 0.10 TCGA-HT-7681-01 22 37524372 37524372 G A IL2RB Missense_Mutation p.P474S 0.33 tolerated(0.25) benign(0.067) TCGA-HT-7681-01 6 163987032 163987032 T C QKI Intron 0.35 TCGA-HT-7681-01 9 33384983 33384983 G A AQP7 3'UTR 0.20 TCGA-HT-7681-01 X 102931856 102931856 T C MORF4L2 Missense_Mutation p.M34V 0.46 tolerated(0.06) benign(0.101) TCGA-HT-7681-01 X 148049222 148049222 G T AFF2 Silent p.L1089L 0.29 TCGA-HT-7681-01 X 16774794 16774794 C A SYAP1 Silent p.R245R 0.18 TCGA-HT-7684-01 11 57367766 57367766 G A SERPING1 Missense_Mutation p.A156T 0.45 tolerated(0.2) benign(0.241) TCGA-HT-7684-01 11 60183353 60183353 T C MS4A14 Silent p.F337F 0.46 TCGA-HT-7684-01 11 89947220 89947220 C T CHORDC1 Missense_Mutation p.A99T 0.04 tolerated(0.09) benign(0.168) TCGA-HT-7684-01 12 29659825 29659825 C T TMTC1 Missense_Mutation p.R868H 0.30 deleterious(0) probably_damaging(0.999) TCGA-HT-7684-01 13 36686247 36686247 C T DCLK1 Missense_Mutation p.R161Q 0.25 tolerated(0.16) unknown(0) TCGA-HT-7684-01 13 73346337 73346337 T C DIS3 Missense_Mutation p.D488G 0.38 deleterious(0) probably_damaging(1) TCGA-HT-7684-01 13 77807397 77807397 G C MYCBP2 Silent p.G839G 0.09 TCGA-HT-7684-01 14 29237034 29237034 G A FOXG1 Silent p.P183P 0.32 TCGA-HT-7684-01 14 45415078 45415078 A - KLHL28 Frame_Shift_Del p.E19Nfs*7 0.19 TCGA-HT-7684-01 14 64676802 64676802 A G SYNE2 Missense_Mutation p.N6228S 0.28 benign(0.012) TCGA-HT-7684-01 14 77942239 77942239 G A ISM2 Missense_Mutation p.A472V 0.23 deleterious(0.01) probably_damaging(0.923) TCGA-HT-7684-01 15 91034589 91034589 C T IQGAP1 Nonsense_Mutation p.Q1425* 0.12 TCGA-HT-7684-01 16 55361220 55361220 G T IRX6 Nonsense_Mutation p.E106* 0.13 TCGA-HT-7684-01 17 42931994 42931994 C T EFTUD2 Missense_Mutation p.R730H 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-HT-7684-01 17 58378974 58378975 TC - USP32 Frame_Shift_Del p.E93Rfs*8 0.12 TCGA-HT-7684-01 17 72249349 72249349 G A TTYH2 Silent p.Q463Q 0.23 TCGA-HT-7684-01 17 74003681 74003681 C T EVPL Missense_Mutation p.V1869M 0.09 deleterious(0) possibly_damaging(0.458) TCGA-HT-7684-01 17 79519011 79519011 G A C17orf70 Missense_Mutation p.A78V 0.25 tolerated(1) benign(0.002) TCGA-HT-7684-01 19 15354030 15354030 C T BRD4 Silent p.V950V 0.19 TCGA-HT-7684-01 19 49183610 49183610 G A RN7SL345P 5'Flank 0.42 TCGA-HT-7684-01 19 6712560 6712560 T C C3 Missense_Mutation p.T360A 0.07 tolerated(0.06) possibly_damaging(0.468) TCGA-HT-7684-01 1 63876858 63876858 T C ALG6 Missense_Mutation p.L179P 0.27 deleterious(0.02) possibly_damaging(0.876) TCGA-HT-7684-01 20 35060961 35060961 G T DLGAP4 Missense_Mutation p.G281W 0.58 deleterious(0.05) probably_damaging(0.975) TCGA-HT-7684-01 2 170038748 170038748 C T LRP2 Silent p.Q3309Q 0.28 TCGA-HT-7684-01 2 190585366 190585366 A C ANKAR Missense_Mutation p.N830H 0.28 tolerated(0.2) benign(0.045) TCGA-HT-7684-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7684-01 2 27346799 27346799 G A ABHD1 5'UTR 0.28 TCGA-HT-7684-01 2 39664068 39664068 G A MAP4K3 Missense_Mutation p.R21C 0.22 deleterious(0) probably_damaging(0.995) TCGA-HT-7684-01 3 107097101 107097101 C T CCDC54 Missense_Mutation p.R223C 0.40 deleterious(0.03) possibly_damaging(0.459) TCGA-HT-7684-01 3 111887770 111887770 C T SLC9C1 Missense_Mutation p.R1064Q 0.27 tolerated(0.18) benign(0.164) TCGA-HT-7684-01 3 47103767 47103767 G C SETD2 Nonsense_Mutation p.S2060* 0.05 TCGA-HT-7684-01 4 4228304 4228304 C A OTOP1 Silent p.L96L 0.15 TCGA-HT-7684-01 5 135561020 135561020 A G TRPC7 Missense_Mutation p.M762T 0.32 tolerated(0.65) benign(0) TCGA-HT-7684-01 6 31685399 31685399 G A LY6G6D Missense_Mutation p.A74T 0.34 tolerated(0.34) possibly_damaging(0.682) TCGA-HT-7684-01 6 56483529 56483529 G A DST Intron 0.25 TCGA-HT-7684-01 6 74229668 74229668 T C EEF1A1 Missense_Mutation p.I28V 0.25 tolerated_low_confidence(0.07) benign(0.327) TCGA-HT-7684-01 7 149482723 149482723 C G SSPO RNA 0.38 TCGA-HT-7684-01 7 75045031 75045031 C T POM121C 3'Flank 0.14 TCGA-HT-7684-01 7 80286000 80286000 G A CD36 Missense_Mutation p.G89S 0.05 deleterious(0) probably_damaging(1) TCGA-HT-7684-01 8 29039519 29039519 G A KIF13B Missense_Mutation p.R168C 0.06 deleterious(0) possibly_damaging(0.886) TCGA-HT-7684-01 9 100991314 100991314 G A TBC1D2 Missense_Mutation p.R300W 0.24 tolerated(0.06) benign(0.031) TCGA-HT-7684-01 9 107456818 107456818 C G OR13D1 Missense_Mutation p.S39C 0.22 deleterious(0) probably_damaging(0.91) TCGA-HT-7684-01 9 113562782 113562782 G C MUSK Missense_Mutation p.Q708H 0.22 deleterious(0) probably_damaging(0.999) TCGA-HT-7684-01 9 125154668 125154668 T G PTGS1 Missense_Mutation p.F549V 0.28 deleterious(0) probably_damaging(1) TCGA-HT-7684-01 9 95077012 95077012 T C NOL8 Missense_Mutation p.H632R 0.35 tolerated(0.58) benign(0.001) TCGA-HT-7684-01 X 100650413 100650413 C A RPL36A Missense_Mutation p.H126N 0.14 deleterious(0.01) benign(0.223) TCGA-HT-7684-01 X 11135492 11135492 T C HCCS Missense_Mutation p.Y120H 0.60 deleterious(0) probably_damaging(0.998) TCGA-HT-7686-01 12 11339191 11339191 A G TAS2R42 Missense_Mutation p.L118P 0.05 deleterious(0.01) possibly_damaging(0.792) TCGA-HT-7686-01 14 24436426 24436426 A G DHRS4 Missense_Mutation p.M225V 0.14 tolerated(0.16) benign(0.001) TCGA-HT-7686-01 14 96944967 96944967 T C AK7 Missense_Mutation p.F574S 0.43 deleterious(0) probably_damaging(1) TCGA-HT-7686-01 17 10429940 10429940 C T MYH2 Missense_Mutation p.R1388H 0.25 deleterious(0.01) possibly_damaging(0.73) TCGA-HT-7686-01 17 3970464 3970464 A G ZZEF1 Missense_Mutation p.I1383T 0.06 tolerated(0.54) benign(0.005) TCGA-HT-7686-01 17 40767042 40767042 G A TUBG1 Missense_Mutation p.G447S 0.09 deleterious_low_confidence(0.03) benign(0.024) TCGA-HT-7686-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.76 tolerated(0.13) possibly_damaging(0.631) TCGA-HT-7686-01 1 11806266 11806266 C A AGTRAP Intron 0.13 TCGA-HT-7686-01 1 155716959 155716959 A T GON4L 3'Flank 0.29 TCGA-HT-7686-01 1 185125852 185125852 G A TRMT1L 5'UTR 0.31 TCGA-HT-7686-01 1 3342279 3342279 G A PRDM16 Missense_Mutation p.R1025Q 0.10 deleterious(0.01) benign(0.39) TCGA-HT-7686-01 20 31035541 31035541 G A C20orf112 Missense_Mutation p.T390I 0.15 deleterious(0.05) benign(0.305) TCGA-HT-7686-01 2 165550871 165550871 C A COBLL1 Missense_Mutation p.A1049S 0.07 tolerated(0.24) benign(0.04) TCGA-HT-7686-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7686-01 3 155200712 155200712 T C PLCH1 Missense_Mutation p.I1043V 0.37 tolerated_low_confidence(0.99) benign(0.001) TCGA-HT-7686-01 4 169105805 169105805 T C ANXA10 Silent p.Y293Y 0.39 TCGA-HT-7686-01 5 23526872 23526872 C T PRDM9 Missense_Mutation p.R559W 0.25 deleterious(0) probably_damaging(1) TCGA-HT-7686-01 5 45262356 45262356 G T HCN1 Silent p.T780T 0.34 TCGA-HT-7686-01 5 54577281 54577281 G C DHX29 Silent p.L676L 0.38 TCGA-HT-7686-01 6 129468139 129468139 G T LAMA2 Silent p.G285G 0.04 TCGA-HT-7686-01 6 40996311 40996311 G T UNC5CL Missense_Mutation p.P453H 0.30 deleterious(0) probably_damaging(0.983) TCGA-HT-7686-01 8 110408325 110408325 T C PKHD1L1 Missense_Mutation p.F294S 0.40 tolerated(0.1) benign(0.438) TCGA-HT-7686-01 8 144941387 144941387 G T EPPK1 Missense_Mutation p.A2012D 0.39 probably_damaging(0.999) TCGA-HT-7686-01 8 24201057 24201057 A G ADAM28 Silent p.G650G 0.35 TCGA-HT-7686-01 9 34250662 34250662 G T UBAP1 Missense_Mutation p.D489Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-HT-7686-01 X 50055581 50055581 T A CCNB3 Missense_Mutation p.S1124R 0.13 tolerated(0.17) possibly_damaging(0.484) TCGA-HT-7686-01 X 76920224 76920224 A - ATRX Frame_Shift_Del p.S1285Pfs*61 0.15 TCGA-HT-7687-01 10 118896039 118896039 C T VAX1 Missense_Mutation p.V125M 0.24 tolerated(0.06) unknown(0) TCGA-HT-7687-01 10 48426631 48426631 T C GDF10 Missense_Mutation p.N459S 0.04 tolerated(0.54) benign(0.026) TCGA-HT-7687-01 11 18568522 18568522 T A UEVLD Missense_Mutation p.D264V 0.09 deleterious(0.01) probably_damaging(0.91) TCGA-HT-7687-01 11 55111416 55111416 T C OR4A16 Missense_Mutation p.L247P 0.28 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-HT-7687-01 11 6231500 6231500 G C C11orf42 Missense_Mutation p.V165L 0.06 deleterious(0.01) benign(0.254) TCGA-HT-7687-01 12 109835562 109835562 G A MYO1H Missense_Mutation p.R156Q 0.06 deleterious(0) possibly_damaging(0.828) TCGA-HT-7687-01 12 111729277 111729277 C T CUX2 Silent p.P119P 0.06 TCGA-HT-7687-01 12 91546948 91546948 G A DCN Missense_Mutation p.T224M 0.05 tolerated(0.21) possibly_damaging(0.623) TCGA-HT-7687-01 14 30105555 30105555 G A PRKD1 Silent p.N377N 0.35 TCGA-HT-7687-01 15 62539227 62539227 C T AC126323.1 5'Flank 0.13 TCGA-HT-7687-01 15 62539305 62539305 T C AC126323.1 5'Flank 0.11 TCGA-HT-7687-01 15 62539307 62539307 T A AC126323.1 5'Flank 0.09 TCGA-HT-7687-01 16 5081777 5081777 T C NAGPA Silent p.Q217Q 0.40 TCGA-HT-7687-01 16 66919576 66919576 C T PDP2 Silent p.L463L 0.40 TCGA-HT-7687-01 16 81161555 81161555 G T PKD1L2 RNA 0.06 TCGA-HT-7687-01 17 4797498 4797498 T C MINK1 Silent p.H900H 0.28 TCGA-HT-7687-01 17 62500099 62500102 ACAG - DDX5 Splice_Site p.X147_splice 0.38 TCGA-HT-7687-01 17 79845924 79845924 G A ALYREF 3'UTR 0.09 TCGA-HT-7687-01 18 24442317 24442317 G A AQP4 Silent p.S92S 0.03 TCGA-HT-7687-01 18 29848207 29848207 T C GAREM Missense_Mutation p.E753G 0.43 tolerated(0.47) benign(0.011) TCGA-HT-7687-01 18 3135615 3135615 G A MYOM1 Silent p.R713R 0.05 TCGA-HT-7687-01 19 51022537 51022537 G A LRRC4B Missense_Mutation p.R145W 0.65 tolerated(0.1) benign(0.218) TCGA-HT-7687-01 1 175116175 175116175 C T TNN Missense_Mutation p.R1290W 0.37 deleterious(0) unknown(0) TCGA-HT-7687-01 1 201042735 201042735 G A CACNA1S Missense_Mutation p.T700M 0.09 tolerated(0.26) benign(0.004) TCGA-HT-7687-01 1 226125277 226125277 G T LEFTY2 Missense_Mutation p.A322D 0.05 deleterious(0.01) benign(0.03) TCGA-HT-7687-01 1 228432192 228432192 C A OBSCN Missense_Mutation p.P1226Q 0.08 benign(0.007) TCGA-HT-7687-01 1 244218515 244218515 G A ZBTB18 Missense_Mutation p.C480Y 0.35 deleterious(0) possibly_damaging(0.899) TCGA-HT-7687-01 1 42050151 42050151 C T HIVEP3 Silent p.S106S 0.68 TCGA-HT-7687-01 20 29976970 29976970 C T DEFB119 Missense_Mutation p.R42H 0.07 deleterious(0.03) probably_damaging(0.958) TCGA-HT-7687-01 20 37580213 37580213 A C FAM83D Missense_Mutation p.S300R 0.05 deleterious(0) probably_damaging(0.999) TCGA-HT-7687-01 20 54974333 54974333 A G CSTF1 Missense_Mutation p.K319R 0.06 deleterious(0) benign(0.217) TCGA-HT-7687-01 21 32589897 32589897 T C TIAM1 Missense_Mutation p.K705R 0.47 tolerated(0.51) benign(0.05) TCGA-HT-7687-01 22 33670371 33670371 T C LARGE 3'UTR 0.05 TCGA-HT-7687-01 2 1926215 1926215 C T MYT1L Silent p.T442T 0.39 TCGA-HT-7687-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7687-01 2 21001131 21001131 C G C2orf43 Missense_Mutation p.W31C 0.34 deleterious(0.04) probably_damaging(0.986) TCGA-HT-7687-01 3 129120596 129120596 G A EFCAB12 Missense_Mutation p.T520I 0.38 deleterious(0) probably_damaging(0.967) TCGA-HT-7687-01 3 169835095 169835095 A G PHC3 Silent p.P704P 0.08 TCGA-HT-7687-01 3 189597990 189597990 T A TP63 Intron 0.11 TCGA-HT-7687-01 3 193360822 193360822 G A OPA1 Missense_Mutation p.C412Y 0.05 tolerated(0.14) benign(0) TCGA-HT-7687-01 3 74383984 74383984 G T CNTN3 Missense_Mutation p.Q524K 0.39 deleterious(0.02) benign(0.005) TCGA-HT-7687-01 3 98109669 98109669 C T OR5K3 Missense_Mutation p.R54C 0.34 deleterious(0.03) benign(0.046) TCGA-HT-7687-01 4 3225848 3225848 G A HTT Silent p.P2585P 0.04 TCGA-HT-7687-01 4 73942823 73942823 T C ANKRD17 Splice_Site p.X2530_splice 0.15 TCGA-HT-7687-01 5 140537080 140537080 G T PCDHB17 Missense_Mutation p.A502S 0.36 tolerated_low_confidence(0.17) benign(0.229) TCGA-HT-7687-01 5 141023973 141023973 C T FCHSD1 Missense_Mutation p.G559R 0.43 deleterious(0) probably_damaging(0.99) TCGA-HT-7687-01 5 75428069 75428069 A G SV2C Missense_Mutation p.D165G 0.24 deleterious(0) probably_damaging(1) TCGA-HT-7687-01 6 135787392 135787392 G A AHI1 Silent p.N103N 0.47 TCGA-HT-7687-01 6 32975227 32975227 C T HLA-DOA Silent p.V158V 0.32 TCGA-HT-7687-01 6 47775993 47775993 T A OPN5 Missense_Mutation p.L287H 0.34 deleterious(0) probably_damaging(0.926) TCGA-HT-7687-01 6 57512602 57512602 T C PRIM2 3'UTR 0.10 TCGA-HT-7687-01 6 87968456 87968457 AG - ZNF292 Frame_Shift_Del p.N1705Ffs*6 0.19 TCGA-HT-7687-01 7 100679973 100679973 C T MUC17 Missense_Mutation p.T1759M 0.38 probably_damaging(0.996) TCGA-HT-7687-01 7 135298930 135298930 C T NUP205 Silent p.C1073C 0.04 TCGA-HT-7687-01 7 143826799 143826799 C - OR2A14 Frame_Shift_Del p.F199Lfs*27 0.19 TCGA-HT-7687-01 7 47933628 47933628 C G PKD1L1 Missense_Mutation p.S767T 0.34 deleterious(0) probably_damaging(0.997) TCGA-HT-7687-01 7 73098232 73098232 G A WBSCR22 Intron 0.16 TCGA-HT-7687-01 9 135730311 135730311 G A AK8 Missense_Mutation p.T112I 0.05 tolerated(0.15) benign(0.002) TCGA-HT-7687-01 9 135979652 135979652 T C RALGDS Missense_Mutation p.T557A 0.44 tolerated(0.27) unknown(0) TCGA-HT-7687-01 9 17795580 17795580 G A SH3GL2 Missense_Mutation p.D300N 0.39 deleterious(0.05) benign(0.315) TCGA-HT-7687-01 X 117900529 117900529 A G IL13RA1 Missense_Mutation p.R289G 0.07 tolerated(0.53) benign(0.001) TCGA-HT-7688-01 10 105990460 105990460 G A WDR96 Silent p.G69G 0.05 TCGA-HT-7688-01 10 125557566 125557566 C T CPXM2 Missense_Mutation p.R272H 0.17 deleterious(0) probably_damaging(1) TCGA-HT-7688-01 10 129923863 129923863 G C MKI67 Missense_Mutation p.S23R 0.10 deleterious(0) probably_damaging(0.967) TCGA-HT-7688-01 10 26463288 26463288 G T MYO3A Missense_Mutation p.Q1365H 0.15 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-HT-7688-01 10 27538754 27538754 G T RP11-85G18.6 Intron 0.13 TCGA-HT-7688-01 10 37486405 37486405 G A ANKRD30A Missense_Mutation p.A849T 0.08 tolerated(0.49) probably_damaging(0.956) TCGA-HT-7688-01 10 51585027 51585029 AAG - NCOA4 In_Frame_Del p.K393del 0.50 TCGA-HT-7688-01 10 54531233 54531233 T C MBL2 Missense_Mutation p.T55A 0.10 tolerated(0.85) benign(0.002) TCGA-HT-7688-01 10 63845531 63845531 A - ARID5B Frame_Shift_Del p.K424Nfs*55 0.29 TCGA-HT-7688-01 10 75557692 75557693 AG - ZSWIM8 Frame_Shift_Del p.G1274Pfs*69 0.11 TCGA-HT-7688-01 10 96824603 96824603 T A CYP2C8 Missense_Mutation p.K199I 0.06 deleterious(0.03) benign(0.177) TCGA-HT-7688-01 11 108381248 108381248 G A EXPH5 Silent p.N1662N 0.03 TCGA-HT-7688-01 11 121429381 121429381 G C SORL1 Silent p.L915L 0.04 TCGA-HT-7688-01 11 125891236 125891237 AA - CDON Frame_Shift_Del p.L87Qfs*15 0.17 TCGA-HT-7688-01 11 126075477 126075477 C T RPUSD4 Missense_Mutation p.D228N 0.07 tolerated(0.54) benign(0.001) TCGA-HT-7688-01 11 6645159 6645159 C G DCHS1 Missense_Mutation p.S2583T 0.05 deleterious(0.05) probably_damaging(0.999) TCGA-HT-7688-01 12 122773037 122773037 T - CLIP1 Frame_Shift_Del p.R1216Efs*6 0.29 TCGA-HT-7688-01 12 54447735 54447735 C G HOXC4 Missense_Mutation p.S10C 0.12 deleterious(0) probably_damaging(0.99) TCGA-HT-7688-01 12 54917243 54917243 G A NCKAP1L Silent p.R648R 0.06 TCGA-HT-7688-01 12 71050530 71050532 CTT - PTPRR In_Frame_Del p.E611del 0.24 TCGA-HT-7688-01 13 113891149 113891149 T C CUL4A Silent p.I287I 0.06 TCGA-HT-7688-01 14 101013006 101013006 C T BEGAIN Intron 0.12 TCGA-HT-7688-01 14 21838616 21838616 A G SUPT16H Missense_Mutation p.M121T 0.06 deleterious(0) benign(0.045) TCGA-HT-7688-01 14 21861840 21861840 T G CHD8 Silent p.P2038P 0.08 TCGA-HT-7688-01 14 51446210 51446210 T C TRIM9 Silent p.R655R 0.06 TCGA-HT-7688-01 14 58605972 58605974 CCT - C14orf37 In_Frame_Del p.R35del 0.34 TCGA-HT-7688-01 14 71492954 71492954 A C PCNX Missense_Mutation p.I1102L 0.11 tolerated(1) benign(0.002) TCGA-HT-7688-01 15 45658331 45658331 T C GATM Silent p.K297K 0.25 TCGA-HT-7688-01 15 48052514 48052514 T A SEMA6D Nonsense_Mutation p.Y41* 0.05 TCGA-HT-7688-01 15 58254315 58254315 G A ALDH1A2 Silent p.G382G 0.04 TCGA-HT-7688-01 15 85619979 85619979 G C PDE8A Missense_Mutation p.E169D 0.08 tolerated(0.19) probably_damaging(0.999) TCGA-HT-7688-01 16 28846954 28846954 C G ATXN2L Missense_Mutation p.P924A 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-HT-7688-01 16 3071291 3071291 C T TNFRSF12A Missense_Mutation p.A57V 0.12 tolerated(0.4) benign(0.066) TCGA-HT-7688-01 16 33020762 33020762 G A IGHV3OR16-8 Missense_Mutation p.R57H 0.13 deleterious_low_confidence(0.04) benign(0.395) TCGA-HT-7688-01 17 19646621 19646621 G A ALDH3A1 Silent p.G106G 0.04 TCGA-HT-7688-01 17 27076467 27076468 GA - TRAF4 Frame_Shift_Del p.S430Ffs*24 0.09 TCGA-HT-7688-01 17 30696691 30696691 G A ZNF207 Silent p.P466P 0.09 TCGA-HT-7688-01 17 33690001 33690001 G C SLFN11 Missense_Mutation p.Q276E 0.29 tolerated(1) benign(0) TCGA-HT-7688-01 17 38715155 38715155 A G CCR7 Missense_Mutation p.V17A 0.10 tolerated_low_confidence(0.14) benign(0.003) TCGA-HT-7688-01 17 39779208 39779208 C T KRT17 Missense_Mutation p.R170H 0.04 deleterious(0.03) benign(0.248) TCGA-HT-7688-01 17 47284016 47284016 T C GNGT2 3'UTR 0.27 TCGA-HT-7688-01 17 56620229 56620229 C T C17orf47 Missense_Mutation p.S440N 0.36 tolerated(0.16) possibly_damaging(0.682) TCGA-HT-7688-01 17 67080574 67080574 T C ABCA6 Missense_Mutation p.K1420R 0.30 deleterious(0.01) possibly_damaging(0.62) TCGA-HT-7688-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.57 deleterious(0) probably_damaging(1) TCGA-HT-7688-01 17 78199637 78199637 A G SLC26A11 Missense_Mutation p.N172S 0.13 deleterious(0.01) benign(0.098) TCGA-HT-7688-01 18 58038877 58038877 G A MC4R Missense_Mutation p.R236C 0.18 tolerated(0.05) benign(0.027) TCGA-HT-7688-01 19 10671046 10671046 G A KRI1 Missense_Mutation p.R254C 0.10 deleterious(0.05) benign(0.015) TCGA-HT-7688-01 19 11106926 11106928 AGA - SMARCA4 In_Frame_Del p.K546del 0.18 TCGA-HT-7688-01 19 15651449 15651449 G A CYP4F22 Missense_Mutation p.R287H 0.23 tolerated(0.15) benign(0.001) TCGA-HT-7688-01 19 36340183 36340183 G A NPHS1 Silent p.C265C 0.32 TCGA-HT-7688-01 19 38643516 38643516 T C SIPA1L3 Silent p.D1190D 0.20 TCGA-HT-7688-01 19 57932608 57932608 A G ZNF17 Missense_Mutation p.K583R 0.23 deleterious(0.01) benign(0.159) TCGA-HT-7688-01 1 100353559 100353559 G A AGL Missense_Mutation p.E903K 0.09 deleterious(0.01) benign(0.028) TCGA-HT-7688-01 1 115487052 115487052 A G SYCP1 Missense_Mutation p.I673M 0.13 tolerated(0.15) benign(0.077) TCGA-HT-7688-01 1 12885051 12885051 T C PRAMEF11 Missense_Mutation p.T354A 0.06 tolerated(0.23) benign(0.079) TCGA-HT-7688-01 1 142713219 142713219 A T RP11-417J8.6 RNA 0.06 TCGA-HT-7688-01 1 152323513 152323513 C G FLG2 Missense_Mutation p.R2250T 0.02 benign(0.003) TCGA-HT-7688-01 1 158325321 158325321 G A CD1E Missense_Mutation p.G196E 0.10 deleterious(0) probably_damaging(0.939) TCGA-HT-7688-01 1 169823532 169823532 A G SCYL3 Missense_Mutation p.I683T 0.06 deleterious(0) probably_damaging(0.999) TCGA-HT-7688-01 1 170928725 170928725 T C MROH9 Missense_Mutation p.I92T 0.12 tolerated(0.47) benign(0.001) TCGA-HT-7688-01 1 19181078 19181078 C T TAS1R2 Missense_Mutation p.A296T 0.21 tolerated(0.43) benign(0.036) TCGA-HT-7688-01 1 228492063 228492063 G A OBSCN Missense_Mutation p.A4688T 0.04 probably_damaging(0.956) TCGA-HT-7688-01 1 248486965 248486965 C A OR2M7 Missense_Mutation p.M302I 0.10 deleterious(0.01) benign(0.001) TCGA-HT-7688-01 1 31744294 31744294 T C SNRNP40 Missense_Mutation p.D236G 0.11 deleterious(0) probably_damaging(0.94) TCGA-HT-7688-01 1 40702367 40702367 C G RLF Missense_Mutation p.L665V 0.31 deleterious(0.01) possibly_damaging(0.77) TCGA-HT-7688-01 1 47533183 47533183 G C CYP4Z1 Missense_Mutation p.Q7H 0.37 tolerated(0.1) benign(0.348) TCGA-HT-7688-01 20 2411182 2411182 T C TGM6 Missense_Mutation p.V590A 0.06 tolerated(0.13) benign(0.113) TCGA-HT-7688-01 20 30388772 30388772 G C TPX2 Splice_Site p.X712_splice 0.06 TCGA-HT-7688-01 20 61960983 61960983 G A COL20A1 Silent p.G1276G 0.15 TCGA-HT-7688-01 22 31137232 31137232 C G OSBP2 Missense_Mutation p.I243M 0.05 deleterious(0.01) probably_damaging(0.983) TCGA-HT-7688-01 22 39439012 39439012 C T APOBEC3F Missense_Mutation p.R30W 0.15 tolerated(0.11) probably_damaging(0.957) TCGA-HT-7688-01 2 120709680 120709680 A G PTPN4 Silent p.E596E 0.06 TCGA-HT-7688-01 2 179463964 179463964 G A TTN Silent p.G18852G 0.18 TCGA-HT-7688-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7688-01 2 27462334 27462334 G - CAD Frame_Shift_Del p.Q1798Rfs*33 0.22 TCGA-HT-7688-01 2 69297779 69297779 A G ANTXR1 Silent p.R99R 0.04 TCGA-HT-7688-01 2 88913303 88913303 T C EIF2AK3 Missense_Mutation p.K126R 0.08 tolerated(0.48) probably_damaging(0.946) TCGA-HT-7688-01 3 129547187 129547187 T G TMCC1 Missense_Mutation p.D12A 0.04 deleterious_low_confidence(0.01) benign(0.265) TCGA-HT-7688-01 3 52802575 52802575 G A NEK4 Missense_Mutation p.R47W 0.05 deleterious(0) probably_damaging(1) TCGA-HT-7688-01 3 53381630 53381630 C G DCP1A 5'UTR 0.21 TCGA-HT-7688-01 4 49000535 49000535 C G CWH43 Missense_Mutation p.R258G 0.07 tolerated(0.33) benign(0.013) TCGA-HT-7688-01 4 55981079 55981079 T C KDR Missense_Mutation p.E207G 0.07 deleterious(0) probably_damaging(0.999) TCGA-HT-7688-01 4 944293 944293 G C TMEM175 Missense_Mutation p.A93P 0.09 deleterious(0.03) probably_damaging(0.945) TCGA-HT-7688-01 5 115298645 115298645 C T AQPEP Silent p.L111L 0.19 TCGA-HT-7688-01 5 127782200 127782203 TGTT - FBN2 Frame_Shift_Del p.K308Rfs*42 0.21 TCGA-HT-7688-01 5 13792273 13792273 T C DNAH5 Missense_Mutation p.R2760G 0.04 benign(0.415) TCGA-HT-7688-01 5 32090257 32090257 C T PDZD2 Missense_Mutation p.R2235W 0.09 deleterious(0) probably_damaging(0.984) TCGA-HT-7688-01 5 70806830 70806830 A G BDP1 Missense_Mutation p.K1304R 0.05 tolerated(0.5) benign(0.008) TCGA-HT-7688-01 5 71493611 71493611 A G MAP1B Missense_Mutation p.K1477E 0.31 benign(0.4) TCGA-HT-7688-01 6 106553291 106553291 G A PRDM1 Missense_Mutation p.G419D 0.13 tolerated(0.42) benign(0.185) TCGA-HT-7688-01 6 131229973 131229976 TCTT - EPB41L2 Frame_Shift_Del p.K280Dfs*3 0.31 TCGA-HT-7688-01 6 1313391 1313391 G A FOXQ1 Missense_Mutation p.G151D 0.05 tolerated(0.16) benign(0.063) TCGA-HT-7688-01 6 157522373 157522373 C G ARID1B Missense_Mutation p.H1549D 0.04 probably_damaging(0.983) TCGA-HT-7688-01 6 35255527 35255527 G A ZNF76 Missense_Mutation p.V113I 0.06 tolerated(0.82) possibly_damaging(0.488) TCGA-HT-7688-01 6 41160191 41160191 G A TREML2 Missense_Mutation p.P314S 0.12 deleterious_low_confidence(0) possibly_damaging(0.802) TCGA-HT-7688-01 6 88221313 88221313 T C SLC35A1 3'UTR 0.10 TCGA-HT-7688-01 7 143884337 143884337 C T ARHGEF35 Silent p.E380E 0.11 TCGA-HT-7688-01 7 22769188 22769188 A T IL6 Missense_Mutation p.E127V 0.14 deleterious(0.01) possibly_damaging(0.899) TCGA-HT-7688-01 7 50686969 50686969 T C GRB10 Silent p.E225E 0.05 TCGA-HT-7688-01 8 133912511 133912511 G A TG Silent p.S1120S 0.08 TCGA-HT-7688-01 8 28625815 28625815 C G INTS9 Missense_Mutation p.E609Q 0.06 tolerated(0.07) probably_damaging(0.998) TCGA-HT-7688-01 8 75737530 75737530 C T PI15 Missense_Mutation p.L16F 0.03 tolerated(0.7) unknown(0) TCGA-HT-7688-01 9 119413978 119413978 G A ASTN2 Silent p.D916D 0.05 TCGA-HT-7688-01 9 138589373 138589373 G A SOHLH1 Missense_Mutation p.T149M 0.06 tolerated(0.14) benign(0.341) TCGA-HT-7688-01 9 77257632 77257632 C T RORB Nonsense_Mutation p.Q180* 0.14 TCGA-HT-7688-01 9 78790066 78790066 A G PCSK5 Intron 0.05 TCGA-HT-7688-01 9 78938042 78938042 C T PCSK5 Missense_Mutation p.R1366C 0.14 deleterious(0.01) benign(0.416) TCGA-HT-7688-01 9 78943022 78943022 C T PCSK5 Silent p.N1452N 0.04 TCGA-HT-7688-01 X 111914407 111914407 G C LHFPL1 Missense_Mutation p.A71G 0.05 deleterious(0.01) probably_damaging(0.963) TCGA-HT-7688-01 X 11783854 11783854 T C MSL3 Intron 0.16 TCGA-HT-7688-01 X 147084823 147084823 A G FMR1NB Missense_Mutation p.N127S 0.21 tolerated(0.8) possibly_damaging(0.486) TCGA-HT-7688-01 X 76875860 76875861 CA - ATRX Splice_Site p.X1758_splice 0.16 TCGA-HT-7688-01 Y 15522901 15522901 A G UTY Missense_Mutation p.V176A 0.37 tolerated(0.14) benign(0.09) TCGA-HT-7689-01 10 105349295 105349295 G A NEURL1 Missense_Mutation p.G455D 0.09 tolerated(0.21) benign(0.28) TCGA-HT-7689-01 10 115380449 115380449 C T NRAP Missense_Mutation p.V930M 0.14 tolerated(0.12) benign(0.037) TCGA-HT-7689-01 10 91533828 91533828 A G KIF20B 3'UTR 0.14 TCGA-HT-7689-01 11 108380864 108380864 G T EXPH5 Missense_Mutation p.H1790Q 0.09 tolerated(0.23) benign(0.012) TCGA-HT-7689-01 11 120355176 120355176 C T ARHGEF12 Silent p.C1528C 0.05 TCGA-HT-7689-01 11 59810975 59810975 T A OOSP2 Missense_Mutation p.V33D 0.17 deleterious(0) probably_damaging(0.961) TCGA-HT-7689-01 12 123983204 123983204 C T RILPL1 Missense_Mutation p.E230K 0.22 deleterious(0.01) possibly_damaging(0.507) TCGA-HT-7689-01 12 21615672 21615672 A G PYROXD1 Splice_Site p.X332_splice 0.22 TCGA-HT-7689-01 12 39761740 39761740 G C KIF21A Missense_Mutation p.T182S 0.08 tolerated(1) benign(0.006) TCGA-HT-7689-01 12 77253345 77253347 CTT - CSRP2 In_Frame_Del p.E162del 0.29 TCGA-HT-7689-01 14 66028460 66028460 T A FUT8 Nonsense_Mutation p.L60* 0.05 TCGA-HT-7689-01 14 90650849 90650849 G A KCNK13 Silent p.L243L 0.39 TCGA-HT-7689-01 15 51766595 51766595 C T DMXL2 Missense_Mutation p.G2387R 0.08 deleterious(0) probably_damaging(1) TCGA-HT-7689-01 15 65312542 65312542 C T MTFMT Silent p.A238A 0.12 TCGA-HT-7689-01 16 1889339 1889339 G A MEIOB Silent p.L379L 0.06 TCGA-HT-7689-01 16 2819161 2819163 TCT - SRRM2 In_Frame_Del p.S2648del 0.25 TCGA-HT-7689-01 16 30732740 30732740 C G SRCAP Missense_Mutation p.P1162A 0.28 unknown(0) TCGA-HT-7689-01 16 30734516 30734516 C G SRCAP Silent p.L1375L 0.29 TCGA-HT-7689-01 16 81094882 81094882 C T C16orf46 Missense_Mutation p.A358T 0.10 tolerated(0.07) benign(0.114) TCGA-HT-7689-01 17 16979036 16979036 T C MPRIP Missense_Mutation p.Y46H 0.04 deleterious(0) probably_damaging(0.999) TCGA-HT-7689-01 17 6381927 6381927 T A PITPNM3 Silent p.R239R 0.16 TCGA-HT-7689-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.68 deleterious(0) probably_damaging(0.998) TCGA-HT-7689-01 17 78184761 78184761 G A SGSH Silent p.Y333Y 0.05 TCGA-HT-7689-01 19 11347158 11347158 G A DOCK6 Silent p.N752N 0.25 TCGA-HT-7689-01 19 50779323 50779323 C A MYH14 Silent p.A1181A 0.21 TCGA-HT-7689-01 19 7533921 7533921 G A ARHGEF18 Missense_Mutation p.V1043M 0.17 deleterious(0) probably_damaging(0.986) TCGA-HT-7689-01 19 9087885 9087885 A G MUC16 Silent p.P1310P 0.06 TCGA-HT-7689-01 19 9089322 9089322 C T MUC16 Silent p.S831S 0.16 TCGA-HT-7689-01 1 1386075 1386075 C T ATAD3C Silent p.D4D 0.21 TCGA-HT-7689-01 1 228529180 228529180 C T OBSCN Missense_Mutation p.R6924C 0.37 probably_damaging(0.999) TCGA-HT-7689-01 1 53608179 53608179 C T SLC1A7 5'UTR 0.16 TCGA-HT-7689-01 20 10624439 10624439 G A JAG1 Silent p.P815P 0.31 TCGA-HT-7689-01 20 13134724 13134724 A G SPTLC3 Missense_Mutation p.I452V 0.12 tolerated(0.95) benign(0.029) TCGA-HT-7689-01 20 13912352 13912352 T G SEL1L2 Silent p.V60V 0.08 TCGA-HT-7689-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7689-01 2 238449504 238449504 C T MLPH Silent p.D450D 0.19 TCGA-HT-7689-01 2 238483770 238483770 G A RAB17 Silent p.A177A 0.35 TCGA-HT-7689-01 2 27591981 27591981 G A EIF2B4 Missense_Mutation p.R124C 0.37 deleterious(0) probably_damaging(0.969) TCGA-HT-7689-01 2 68873428 68873428 G A PROKR1 Missense_Mutation p.A159T 0.18 deleterious(0) probably_damaging(0.972) TCGA-HT-7689-01 3 135825112 135825112 G A PPP2R3A Missense_Mutation p.E1093K 0.32 deleterious(0) probably_damaging(0.986) TCGA-HT-7689-01 3 142224106 142224106 C T ATR Missense_Mutation p.G1691R 0.11 deleterious(0) probably_damaging(1) TCGA-HT-7689-01 3 49692138 49692138 A T BSN Missense_Mutation p.N1717Y 0.04 unknown(0) TCGA-HT-7689-01 3 52850942 52850942 G A ITIH4 Missense_Mutation p.S810F 0.12 deleterious(0.03) probably_damaging(0.95) TCGA-HT-7689-01 4 126240610 126240610 T C FAT4 Missense_Mutation p.F1015S 0.04 probably_damaging(0.999) TCGA-HT-7689-01 4 9784872 9784872 G A DRD5 Missense_Mutation p.A407T 0.05 tolerated(0.21) benign(0.003) TCGA-HT-7689-01 5 118829578 118829578 G C HSD17B4 Missense_Mutation p.V294L 0.07 deleterious(0.01) benign(0.362) TCGA-HT-7689-01 5 130825275 130825275 T C RAPGEF6 Missense_Mutation p.T602A 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-HT-7689-01 5 140249832 140249832 G A PCDHA11 Missense_Mutation p.G382R 0.12 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-HT-7689-01 5 150924794 150924794 C A FAT2 Missense_Mutation p.S1965I 0.16 benign(0.197) TCGA-HT-7689-01 5 41058222 41058222 C G MROH2B Missense_Mutation p.Q233H 0.10 tolerated(0.59) benign(0.031) TCGA-HT-7689-01 6 131996232 131996232 G A ENPP3 Missense_Mutation p.A259T 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-HT-7689-01 6 136709623 136709623 C T MAP7 Missense_Mutation p.R167H 0.25 deleterious(0) probably_damaging(0.999) TCGA-HT-7689-01 6 33656101 33656101 G A ITPR3 Missense_Mutation p.R2154Q 0.27 deleterious(0.03) benign(0.028) TCGA-HT-7689-01 6 74354177 74354177 C A SLC17A5 Missense_Mutation p.A82S 0.21 tolerated(0.84) benign(0.026) TCGA-HT-7689-01 7 121679632 121679635 AAAT - PTPRZ1 Frame_Shift_Del p.I1877Kfs*35 0.12 TCGA-HT-7689-01 7 37955897 37955897 G A SFRP4 Silent p.Y81Y 0.05 TCGA-HT-7689-01 7 48313892 48313892 T G ABCA13 Missense_Mutation p.I1543M 0.09 benign(0.03) TCGA-HT-7689-01 8 41552258 41552258 G A ANK1 Missense_Mutation p.P1101L 0.16 deleterious(0) probably_damaging(1) TCGA-HT-7689-01 9 133932363 133932363 C T LAMC3 Missense_Mutation p.L663F 0.13 tolerated(0.72) benign(0.111) TCGA-HT-7689-01 9 140137441 140137441 G C TUBB4B Missense_Mutation p.M257I 0.11 deleterious_low_confidence(0) benign(0.003) TCGA-HT-7689-01 9 95610656 95610656 C T ZNF484 Missense_Mutation p.R140H 0.38 tolerated(0.97) benign(0) TCGA-HT-7689-01 X 119739938 119739938 G A MCTS1 Missense_Mutation p.E58K 0.06 deleterious(0.03) benign(0.011) TCGA-HT-7689-01 X 122538740 122538740 G A GRIA3 Missense_Mutation p.G492D 0.11 deleterious(0.01) benign(0.327) TCGA-HT-7689-01 X 125299120 125299120 C T DCAF12L2 Missense_Mutation p.R263H 0.08 tolerated(0.59) benign(0.005) TCGA-HT-7689-01 X 144904329 144904329 C A SLITRK2 Missense_Mutation p.T129N 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-HT-7689-01 X 151336862 151336862 C T GABRA3 Silent p.V439V 0.27 TCGA-HT-7689-01 X 69652260 69652260 G A GDPD2 Missense_Mutation p.D522N 0.31 tolerated(0.25) benign(0.069) TCGA-HT-7689-01 X 76939638 76939639 - T ATRX Nonsense_Mutation p.Y370* 0.20 TCGA-HT-7690-01 10 98819232 98819232 C T SLIT1 Missense_Mutation p.R357H 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-HT-7690-01 11 64601218 64601218 G A CDC42BPG Missense_Mutation p.R853C 0.06 deleterious(0.04) probably_damaging(0.939) TCGA-HT-7690-01 15 75557535 75557535 G A GOLGA6C Missense_Mutation p.A213T 0.19 tolerated(0.19) probably_damaging(0.982) TCGA-HT-7690-01 16 48211013 48211013 C T ABCC11 Silent p.S1120S 0.34 TCGA-HT-7690-01 17 33690253 33690273 GGTCAGCAGGATCCGAGTTTG - SLFN11 In_Frame_Del p.P185_D191del 0.13 TCGA-HT-7690-01 17 56435582 56435582 G A RNF43 Nonsense_Mutation p.R519* 0.46 TCGA-HT-7690-01 17 60879010 60879010 A G MARCH10 Silent p.Y29Y 0.11 TCGA-HT-7690-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.79 deleterious(0) probably_damaging(0.996) TCGA-HT-7690-01 19 2076843 2076843 G A MOB3A Silent p.F197F 0.44 TCGA-HT-7690-01 19 3779721 3779721 A C MATK Missense_Mutation p.F274V 0.40 deleterious(0) probably_damaging(0.966) TCGA-HT-7690-01 19 50387777 50387778 GG C TBC1D17 Frame_Shift_Del p.D436Mfs*24 0.21 TCGA-HT-7690-01 19 56953384 56953384 T C ZNF667 Missense_Mutation p.E327G 0.06 deleterious(0.02) benign(0.003) TCGA-HT-7690-01 1 120510154 120510154 C T NOTCH2 Missense_Mutation p.R452H 0.08 deleterious(0.04) probably_damaging(1) TCGA-HT-7690-01 1 168550354 168550354 G A XCL1 Missense_Mutation p.V81I 0.34 tolerated(0.88) benign(0.062) TCGA-HT-7690-01 1 26371545 26371545 G A SLC30A2 Missense_Mutation p.R72C 0.44 deleterious(0.03) benign(0.063) TCGA-HT-7690-01 20 43804672 43804672 G C PI3 Missense_Mutation p.A84P 0.37 tolerated(0.18) probably_damaging(0.992) TCGA-HT-7690-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7690-01 4 103822448 103822448 G A SLC9B1 Silent p.S458S 0.07 TCGA-HT-7690-01 4 78665985 78665985 C T CNOT6L Missense_Mutation p.A202T 0.47 deleterious(0.02) probably_damaging(0.957) TCGA-HT-7690-01 5 159344767 159344767 G T ADRA1B Missense_Mutation p.K285N 0.46 deleterious(0) probably_damaging(1) TCGA-HT-7690-01 6 51747892 51747892 T C PKHD1 Missense_Mutation p.K2450R 0.39 deleterious(0.03) benign(0.01) TCGA-HT-7690-01 7 142658506 142658506 A C KEL Missense_Mutation p.L55W 0.54 deleterious(0.01) possibly_damaging(0.711) TCGA-HT-7690-01 8 144946590 144946590 G A EPPK1 Missense_Mutation p.R278W 0.12 possibly_damaging(0.794) TCGA-HT-7690-01 8 73848875 73848875 C T KCNB2 Missense_Mutation p.R429C 0.06 deleterious(0) probably_damaging(1) TCGA-HT-7690-01 9 74865740 74865740 C T GDA 3'Flank 0.34 TCGA-HT-7690-01 X 138857058 138857058 T C ATP11C Silent p.K672K 0.09 TCGA-HT-7690-01 X 76849221 76849221 T C ATRX Missense_Mutation p.K2019E 0.83 possibly_damaging(0.562) TCGA-HT-7691-01 10 105145230 105145230 C T TAF5 Silent p.G604G 0.07 TCGA-HT-7691-01 13 23908606 23908606 C T SACS Missense_Mutation p.D3137N 0.33 probably_damaging(0.992) TCGA-HT-7691-01 17 3560060 3560060 A G CTNS Missense_Mutation p.I218V 0.21 tolerated(0.63) benign(0.003) TCGA-HT-7691-01 17 40277866 40277866 G A RAB5C Nonsense_Mutation p.R229* 0.24 TCGA-HT-7691-01 19 18183118 18183118 C T IL12RB1 Silent p.A275A 0.31 TCGA-HT-7691-01 1 110740737 110740737 G A SLC6A17 Missense_Mutation p.A619T 0.10 deleterious(0.04) benign(0.057) TCGA-HT-7691-01 5 140572688 140572688 G T PCDHB10 Missense_Mutation p.G188V 0.27 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-HT-7691-01 7 2583295 2583295 C A BRAT1 Silent p.V244V 0.11 TCGA-HT-7691-01 X 79932312 79932312 G A BRWD3 Silent p.T1735T 0.06 TCGA-HT-7692-01 10 123256167 123256167 G T FGFR2 Missense_Mutation p.P582Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-HT-7692-01 10 5979128 5979128 G A FBXO18 Missense_Mutation p.R1057H 0.28 tolerated(0.07) possibly_damaging(0.633) TCGA-HT-7692-01 11 123901193 123901193 C T OR10G8 Silent p.T288T 0.08 TCGA-HT-7692-01 11 1270916 1270916 C T MUC5B Missense_Mutation p.P4269L 0.20 possibly_damaging(0.726) TCGA-HT-7692-01 11 18253209 18253209 C T SAA4 Missense_Mutation p.R78H 0.37 deleterious(0) benign(0.005) TCGA-HT-7692-01 11 30253434 30253434 T C FSHB Intron 0.14 TCGA-HT-7692-01 11 55136117 55136118 TT - OR4A15 Frame_Shift_Del p.L253Qfs*43 0.09 TCGA-HT-7692-01 11 59211422 59211422 G A OR5A1 Missense_Mutation p.V261M 0.41 tolerated(0.64) benign(0.005) TCGA-HT-7692-01 11 67941292 67941292 T C SUV420H1 Missense_Mutation p.K211R 0.08 deleterious(0.03) benign(0.151) TCGA-HT-7692-01 11 68337357 68337357 T C PPP6R3 Silent p.L424L 0.47 TCGA-HT-7692-01 12 53689235 53689235 G A PFDN5 5'UTR 0.40 TCGA-HT-7692-01 12 78591057 78591057 G A NAV3 Missense_Mutation p.E2086K 0.06 deleterious(0.02) possibly_damaging(0.785) TCGA-HT-7692-01 17 16852148 16852148 C T TNFRSF13B Missense_Mutation p.E117K 0.41 tolerated(0.05) possibly_damaging(0.656) TCGA-HT-7692-01 17 7535330 7535330 T C SHBG Silent p.D283D 0.14 TCGA-HT-7692-01 19 10224314 10224314 A T P2RY11 Nonsense_Mutation p.K9* 0.36 TCGA-HT-7692-01 19 10421614 10421614 C T FDX1L Missense_Mutation p.A104T 0.15 deleterious(0) probably_damaging(0.998) TCGA-HT-7692-01 19 9296887 9296887 C T OR7D2 Silent p.L144L 0.09 TCGA-HT-7692-01 1 156642351 156642351 T C NES Silent p.K543K 0.11 TCGA-HT-7692-01 1 185964003 185964003 G T HMCN1 Missense_Mutation p.V1188L 0.05 benign(0.164) TCGA-HT-7692-01 1 247695072 247695072 C T OR2C3 Missense_Mutation p.V248M 0.33 deleterious(0) probably_damaging(0.954) TCGA-HT-7692-01 20 18168088 18168088 G A CSRP2BP Silent p.L778L 0.46 TCGA-HT-7692-01 20 3209830 3209830 G A SLC4A11 Silent p.S686S 0.10 TCGA-HT-7692-01 20 34618499 34618499 T C CNBD2 Missense_Mutation p.Y550H 0.44 tolerated(0.37) benign(0.035) TCGA-HT-7692-01 21 35468232 35468232 A G SLC5A3 Silent p.K245K 0.38 TCGA-HT-7692-01 21 38444926 38444926 C G PIGP 5'UTR 0.24 TCGA-HT-7692-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7692-01 3 157154729 157154731 CTC - PTX3 In_Frame_Del p.L4del 0.46 TCGA-HT-7692-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.26 deleterious(0.02) probably_damaging(0.984) TCGA-HT-7692-01 4 170017683 170017690 ACAAAGCT - SH3RF1 Frame_Shift_Del p.S883Gfs*46 0.10 TCGA-HT-7692-01 5 172587005 172587005 G A BNIP1 Silent p.R190R 0.41 TCGA-HT-7692-01 6 49976849 49976849 G A DEFB110 3'Flank 0.23 TCGA-HT-7692-01 7 77885556 77885556 G A MAGI2 Missense_Mutation p.P584L 0.05 tolerated(0.57) possibly_damaging(0.826) TCGA-HT-7692-01 8 143623472 143623472 C T BAI1 Missense_Mutation p.R1293C 0.08 tolerated(0.17) possibly_damaging(0.527) TCGA-HT-7692-01 9 90501843 90501843 G A SPATA31E1 Missense_Mutation p.G814E 0.52 tolerated(0.32) benign(0.176) TCGA-HT-7693-01 10 112657886 112657886 A T PDCD4 3'UTR 0.33 TCGA-HT-7693-01 11 66084109 66084109 G A CD248 Silent p.R130R 0.65 TCGA-HT-7693-01 11 95512812 95512812 C G FAM76B Missense_Mutation p.K217N 0.10 tolerated(0.2) probably_damaging(0.948) TCGA-HT-7693-01 12 86373270 86373270 C G MGAT4C Missense_Mutation p.D412H 0.07 deleterious(0) possibly_damaging(0.498) TCGA-HT-7693-01 14 31590686 31590686 C T HECTD1 Missense_Mutation p.R1714H 0.32 tolerated_low_confidence(0.09) benign(0.006) TCGA-HT-7693-01 14 39648579 39648579 A G PNN Missense_Mutation p.K236E 0.11 tolerated(0.06) possibly_damaging(0.636) TCGA-HT-7693-01 15 100269282 100269282 T C LYSMD4 3'UTR 0.45 TCGA-HT-7693-01 15 25344651 25344651 G A SNORD116-26 RNA 0.32 TCGA-HT-7693-01 15 43701105 43701105 T C TP53BP1 Missense_Mutation p.I1864V 0.05 deleterious(0.05) possibly_damaging(0.674) TCGA-HT-7693-01 17 26116671 26116671 G A NOS2 Nonsense_Mutation p.Q52* 0.04 TCGA-HT-7693-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.94 deleterious(0) probably_damaging(0.998) TCGA-HT-7693-01 18 10691360 10691360 A C PIEZO2 Silent p.V2291V 0.05 TCGA-HT-7693-01 18 44561291 44561291 G A TCEB3B Silent p.N115N 0.34 TCGA-HT-7693-01 19 50936204 50936204 C A MYBPC2 5'UTR 0.11 TCGA-HT-7693-01 19 56539141 56539141 C T NLRP5 Silent p.G514G 0.43 TCGA-HT-7693-01 1 158747181 158747181 A G OR6N2 Missense_Mutation p.L82S 0.06 deleterious(0) probably_damaging(0.999) TCGA-HT-7693-01 1 169699643 169699643 C A SELE Silent p.L215L 0.04 TCGA-HT-7693-01 1 18808237 18808237 C T KLHDC7A Silent p.G254G 0.04 TCGA-HT-7693-01 1 249142800 249142800 G A ZNF672 Missense_Mutation p.E443K 0.12 tolerated_low_confidence(0.66) benign(0.016) TCGA-HT-7693-01 20 35445842 35445842 G A SOGA1 Silent p.L368L 0.48 TCGA-HT-7693-01 21 31798186 31798186 G A KRTAP13-3 Silent p.H15H 0.44 TCGA-HT-7693-01 22 46793715 46793715 C T CELSR1 Missense_Mutation p.V1853I 0.43 tolerated(0.95) benign(0.002) TCGA-HT-7693-01 2 170026253 170026253 C A LRP2 Missense_Mutation p.G3819V 0.12 probably_damaging(0.998) TCGA-HT-7693-01 2 206997793 206997793 C T NDUFS1 Missense_Mutation p.G491S 0.18 deleterious(0.02) probably_damaging(0.975) TCGA-HT-7693-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.47 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-HT-7693-01 2 31589846 31589846 C T XDH Missense_Mutation p.G738S 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-HT-7693-01 2 3691639 3691639 C T COLEC11 Silent p.G263G 0.42 TCGA-HT-7693-01 3 184033364 184033364 G C EIF4G1 5'UTR 0.31 TCGA-HT-7693-01 3 42916559 42916559 G T CYP8B1 Silent p.G250G 0.10 TCGA-HT-7693-01 3 46023170 46023170 T C FYCO1 Splice_Site p.X19_splice 0.46 TCGA-HT-7693-01 3 89480429 89480429 A G EPHA3 Missense_Mutation p.S756G 0.31 tolerated(0.08) probably_damaging(0.985) TCGA-HT-7693-01 4 70709895 70709895 C T SULT1E1 Silent p.S252S 0.31 TCGA-HT-7693-01 5 101631898 101631898 C G SLCO4C1 Missense_Mutation p.L23F 0.38 tolerated(0.7) benign(0.049) TCGA-HT-7693-01 5 180651435 180651435 A T TRIM41 Missense_Mutation p.R146W 0.37 tolerated(0.19) unknown(0) TCGA-HT-7693-01 6 161016555 161016555 C G LPA Missense_Mutation p.R1100S 0.08 tolerated(0.44) benign(0.238) TCGA-HT-7693-01 6 76024718 76024718 T C FILIP1 Missense_Mutation p.E277G 0.04 deleterious(0.01) benign(0.151) TCGA-HT-7693-01 7 100684864 100684864 A T MUC17 Silent p.I3389I 0.53 TCGA-HT-7693-01 8 135649705 135649705 T C ZFAT Silent p.A149A 0.42 TCGA-HT-7693-01 8 99101917 99101917 G C C8orf47 Missense_Mutation p.E224D 0.33 tolerated(0.06) possibly_damaging(0.801) TCGA-HT-7693-01 9 125551909 125551909 G A OR5C1 Missense_Mutation p.R233H 0.07 tolerated(0.47) benign(0.003) TCGA-HT-7693-01 X 106843712 106843712 C - FRMPD3 Frame_Shift_Del p.F849Sfs*76 0.13 TCGA-HT-7693-01 X 110952273 110952273 G C ALG13 Missense_Mutation p.E277D 0.29 deleterious(0.03) possibly_damaging(0.837) TCGA-HT-7693-01 X 135047268 135047268 G A MMGT1 Missense_Mutation p.S104L 0.13 tolerated(0.33) benign(0.295) TCGA-HT-7693-01 X 148035253 148035253 G A AFF2 Missense_Mutation p.R514H 0.42 tolerated(0.45) possibly_damaging(0.685) TCGA-HT-7693-01 X 154159216 154159216 T C F8 Missense_Mutation p.E950G 0.05 tolerated(0.93) benign(0.002) TCGA-HT-7693-01 X 49455852 49455852 C T PAGE1 Missense_Mutation p.G98R 0.18 deleterious(0) probably_damaging(0.988) TCGA-HT-7693-01 X 54470611 54470611 G C TSR2 Missense_Mutation p.E145D 0.43 tolerated(0.25) benign(0.002) TCGA-HT-7693-01 X 62917174 62917174 T G ARHGEF9 Missense_Mutation p.K131T 0.04 tolerated(0.14) benign(0.019) TCGA-HT-7693-01 X 70618475 70618475 G A TAF1 Missense_Mutation p.R1245Q 0.40 deleterious(0.03) probably_damaging(0.953) TCGA-HT-7693-01 X 76813058 76813058 C T ATRX Missense_Mutation p.R2188Q 0.45 possibly_damaging(0.708) TCGA-HT-7693-01 X 83723854 83723854 A G HDX Missense_Mutation p.C293R 0.06 deleterious(0.05) benign(0.366) TCGA-HT-7694-01 10 76980618 76980618 G A VDAC2 Silent p.E173E 0.18 TCGA-HT-7694-01 10 88835744 88835744 A C GLUD1 Missense_Mutation p.I188S 0.13 deleterious(0) probably_damaging(1) TCGA-HT-7694-01 11 63764577 63764579 CCT - OTUB1 In_Frame_Del p.S161del 0.19 TCGA-HT-7694-01 12 31944718 31944718 C T H3F3C Missense_Mutation p.R128H 0.15 tolerated_low_confidence(0.06) benign(0.092) TCGA-HT-7694-01 12 80761461 80761461 A G OTOGL Missense_Mutation p.H2142R 0.26 tolerated(0.67) benign(0.064) TCGA-HT-7694-01 14 23416936 23416936 A C HAUS4 Missense_Mutation p.L238R 0.24 deleterious(0) probably_damaging(1) TCGA-HT-7694-01 15 75682071 75682090 ATCTTCATACTGTGATGAGT - SIN3A Frame_Shift_Del p.D975Vfs*33 0.15 TCGA-HT-7694-01 15 79748620 79748620 C A KIAA1024 Missense_Mutation p.A44D 0.24 deleterious(0) benign(0.33) TCGA-HT-7694-01 16 15026513 15026513 C T NPIPA1 5'Flank 0.04 TCGA-HT-7694-01 16 66919405 66919405 C T PDP2 Silent p.F406F 0.29 TCGA-HT-7694-01 17 15978996 15978996 C T NCOR1 Silent p.Q1174Q 0.04 TCGA-HT-7694-01 18 20602227 20602227 G A RBBP8 Missense_Mutation p.E864K 0.20 deleterious(0.04) benign(0.114) TCGA-HT-7694-01 19 42793443 42793444 - C CIC Frame_Shift_Ins p.L418Afs*15 0.19 TCGA-HT-7694-01 1 196694339 196694341 CTC - CFH In_Frame_Del p.S596del 0.26 TCGA-HT-7694-01 1 36359738 36359739 CT - AGO1 Frame_Shift_Del p.Q252Afs*29 0.18 TCGA-HT-7694-01 1 50575584 50575584 T A ELAVL4 Intron 0.11 TCGA-HT-7694-01 1 78422330 78422331 AT - FUBP1 Frame_Shift_Del p.Y544Lfs*22 0.23 TCGA-HT-7694-01 1 79383689 79383689 G C ELTD1 Missense_Mutation p.A503G 0.11 deleterious(0) probably_damaging(1) TCGA-HT-7694-01 20 58520040 58520040 G A FAM217B Missense_Mutation p.A348T 0.18 tolerated(0.62) benign(0.076) TCGA-HT-7694-01 2 15523366 15523366 T C NBAS Silent p.T1111T 0.25 TCGA-HT-7694-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7694-01 2 21230343 21230343 G A APOB Missense_Mutation p.P3133S 0.20 probably_damaging(0.999) TCGA-HT-7694-01 2 230723871 230723871 G A TRIP12 Missense_Mutation p.A173V 0.31 tolerated_low_confidence(0.07) benign(0.122) TCGA-HT-7694-01 2 68384619 68384619 C T WDR92 5'UTR 0.31 TCGA-HT-7694-01 2 7164513 7164513 A G RNF144A Missense_Mutation p.M175V 0.23 tolerated(0.52) benign(0) TCGA-HT-7694-01 2 86355071 86355074 GCTT - PTCD3 Frame_Shift_Del p.L369Qfs*17 0.14 TCGA-HT-7694-01 3 12653552 12653552 G A RAF1 Nonsense_Mutation p.R73* 0.04 TCGA-HT-7694-01 3 13679124 13679124 C T FBLN2 Missense_Mutation p.T1134M 0.08 deleterious(0) probably_damaging(1) TCGA-HT-7694-01 3 152058574 152058574 A G TMEM14E Silent p.S40S 0.22 TCGA-HT-7694-01 3 37458938 37458938 A G C3orf35 Missense_Mutation p.S61G 0.24 tolerated_low_confidence(0.07) benign(0.281) TCGA-HT-7694-01 3 53126463 53126463 C T RFT1 Silent p.R460R 0.35 TCGA-HT-7694-01 4 187173195 187173195 G A KLKB1 Missense_Mutation p.R390H 0.03 deleterious(0) probably_damaging(1) TCGA-HT-7694-01 4 68606313 68606313 C T GNRHR Nonsense_Mutation p.W291* 0.06 TCGA-HT-7694-01 4 73963819 73963820 TC - ANKRD17 Frame_Shift_Del p.R1664Kfs*17 0.16 TCGA-HT-7694-01 5 67589138 67589138 G A PIK3R1 Missense_Mutation p.G376R 0.13 deleterious(0) probably_damaging(1) TCGA-HT-7694-01 6 143823670 143823670 C T FUCA2 Missense_Mutation p.R262H 0.11 deleterious(0) probably_damaging(1) TCGA-HT-7694-01 6 41165998 41165998 G A TREML2 Silent p.P75P 0.05 TCGA-HT-7694-01 6 56472643 56472645 AAG - DST Intron 0.29 TCGA-HT-7694-01 6 76023092 76023092 G A FILIP1 Missense_Mutation p.T819M 0.03 deleterious(0) probably_damaging(0.975) TCGA-HT-7694-01 6 88187186 88187186 C G SLC35A1 Silent p.L41L 0.05 TCGA-HT-7694-01 6 99817516 99817516 G A COQ3 Missense_Mutation p.A357V 0.19 tolerated_low_confidence(0.12) benign(0.01) TCGA-HT-7694-01 7 100064672 100064672 G T TSC22D4 Silent p.R366R 0.15 TCGA-HT-7694-01 7 101267513 101267513 C T MYL10 Missense_Mutation p.G37D 0.25 deleterious(0.01) probably_damaging(1) TCGA-HT-7694-01 7 73795186 73795187 TG - CLIP2 Frame_Shift_Del p.V825Gfs*36 0.26 TCGA-HT-7694-01 9 127572530 127572530 T C OLFML2A Missense_Mutation p.Y600H 0.23 deleterious(0) possibly_damaging(0.727) TCGA-HT-7694-01 9 137804960 137804960 G T FCN1 Silent p.R124R 0.06 TCGA-HT-7695-01 11 47312158 47312158 C T MADD Intron 0.10 TCGA-HT-7695-01 11 62760876 62760876 G A SLC22A8 Intron 0.35 TCGA-HT-7695-01 15 45713342 45713342 C T SPATA5L1 Silent p.C732C 0.23 TCGA-HT-7695-01 16 29897045 29897045 G A SEZ6L2 Missense_Mutation p.P412S 0.17 tolerated(0.79) benign(0.002) TCGA-HT-7695-01 16 67688719 67688719 A G RLTPR Silent p.P1207P 0.26 TCGA-HT-7695-01 17 10533673 10533673 G A MYH3 Missense_Mutation p.R1797C 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-HT-7695-01 17 62043903 62043903 C T SCN4A Silent p.G346G 0.17 TCGA-HT-7695-01 19 42798840 42798840 G A CIC Missense_Mutation p.R1471Q 0.19 possibly_damaging(0.885) TCGA-HT-7695-01 1 46497240 46497240 C A MAST2 Nonsense_Mutation p.S1057* 0.06 TCGA-HT-7695-01 1 63790048 63790048 C T FOXD3 Missense_Mutation p.T440M 0.17 deleterious_low_confidence(0) unknown(0) TCGA-HT-7695-01 1 89730624 89730624 A G GBP5 Silent p.Y298Y 0.62 TCGA-HT-7695-01 22 37578623 37578623 C T C1QTNF6 Missense_Mutation p.V148M 0.04 deleterious(0) probably_damaging(1) TCGA-HT-7695-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7695-01 2 25972673 25972673 C T ASXL2 Silent p.R584R 0.21 TCGA-HT-7695-01 2 26688556 26688556 C T OTOF Missense_Mutation p.A1595T 0.05 tolerated(0.24) benign(0.009) TCGA-HT-7695-01 2 37268386 37268386 G C HEATR5B Missense_Mutation p.L916V 0.36 deleterious(0) probably_damaging(0.966) TCGA-HT-7695-01 3 129158678 129158678 G A MBD4 5'UTR 0.18 TCGA-HT-7695-01 3 48684252 48684252 G A CELSR3 Silent p.Y2413Y 0.06 TCGA-HT-7695-01 3 52812973 52812973 C T ITIH1 Silent p.N107N 0.23 TCGA-HT-7695-01 6 110953281 110953281 G A CDK19 Missense_Mutation p.R200W 0.09 deleterious(0) probably_damaging(0.995) TCGA-HT-7695-01 6 88854091 88854091 A G CNR1 Silent p.A301A 0.12 TCGA-HT-7695-01 6 90573819 90573819 G C CASP8AP2 RNA 0.21 TCGA-HT-7695-01 8 11189480 11189480 G A SLC35G5 Missense_Mutation p.E289K 0.19 deleterious(0) probably_damaging(0.998) TCGA-HT-7695-01 8 86049720 86049720 G A LRRCC1 Missense_Mutation p.R784H 0.37 deleterious(0.05) benign(0.081) TCGA-HT-7695-01 9 100897160 100897160 C T CORO2A Silent p.A132A 0.37 TCGA-HT-7695-01 9 134455699 134455699 G A RAPGEF1 Missense_Mutation p.R1030W 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-HT-7695-01 X 117959418 117959418 G A ZCCHC12 Missense_Mutation p.V71I 0.05 tolerated(0.2) benign(0.093) TCGA-HT-7695-01 X 15365420 15365420 A G FIGF Silent p.R268R 0.10 TCGA-HT-7695-01 X 65427079 65427079 T A HEPH Silent p.G832G 0.17 TCGA-HT-7695-01 X 70837109 70837109 G A CXCR3 Silent p.N118N 0.18 TCGA-HT-7695-01 X 9905237 9905237 G A SHROOM2 Silent p.S1217S 0.18 TCGA-HT-7854-01 10 72026066 72026066 A G NPFFR1 Missense_Mutation p.L30P 0.14 deleterious(0.02) benign(0.008) TCGA-HT-7854-01 12 112915523 112915523 A G PTPN11 Missense_Mutation p.N308D 0.21 deleterious(0.03) benign(0) TCGA-HT-7854-01 12 124817682 124817683 - C NCOR2 Frame_Shift_Ins p.E2250Gfs*49 0.24 TCGA-HT-7854-01 12 5603797 5603797 C T NTF3 Silent p.Y152Y 0.24 TCGA-HT-7854-01 12 7050146 7050146 C T ATN1 Silent p.H1106H 0.22 TCGA-HT-7854-01 12 83379779 83379779 A G TMTC2 Missense_Mutation p.D675G 0.33 deleterious(0.01) probably_damaging(0.96) TCGA-HT-7854-01 15 81571959 81571959 C T IL16 Silent p.L309L 0.40 TCGA-HT-7854-01 16 85954914 85954914 G A IRF8 3'UTR 0.19 TCGA-HT-7854-01 17 39041184 39041184 A T KRT20 Missense_Mutation p.L85Q 0.09 deleterious(0) probably_damaging(1) TCGA-HT-7854-01 17 61621618 61621618 C T KCNH6 Missense_Mutation p.P784S 0.35 tolerated_low_confidence(0.25) benign(0.004) TCGA-HT-7854-01 17 72473594 72473594 C T CD300A Silent p.L185L 0.19 TCGA-HT-7854-01 18 48190668 48190668 C T MAPK4 Missense_Mutation p.R114C 0.12 deleterious(0) benign(0.015) TCGA-HT-7854-01 19 1056395 1056395 C T ABCA7 Missense_Mutation p.L1495F 0.26 deleterious(0) probably_damaging(1) TCGA-HT-7854-01 19 17895689 17895689 G A FCHO1 Silent p.V794V 0.12 TCGA-HT-7854-01 19 50812434 50812434 G T MYH14 Missense_Mutation p.R1987L 0.05 deleterious(0) probably_damaging(0.972) TCGA-HT-7854-01 1 110168798 110168798 C G AMPD2 Missense_Mutation p.L178V 0.19 tolerated(0.07) benign(0.08) TCGA-HT-7854-01 1 157665876 157665876 G A FCRL3 Silent p.N362N 0.09 TCGA-HT-7854-01 1 67371036 67371037 - A WDR78 Frame_Shift_Ins p.K65* 0.40 TCGA-HT-7854-01 20 20271009 20271009 G A C20orf26 Missense_Mutation p.E1064K 0.27 tolerated(0.11) benign(0.01) TCGA-HT-7854-01 20 44472287 44472287 C G ACOT8 Silent p.L240L 0.23 TCGA-HT-7854-01 22 22661528 22661528 A G BMS1P20 RNA 0.15 TCGA-HT-7854-01 2 70188202 70188202 C T ASPRV1 Missense_Mutation p.V207M 0.05 deleterious(0.01) probably_damaging(1) TCGA-HT-7854-01 3 111604041 111604042 - CAGA PHLDB2 Frame_Shift_Ins p.V376Qfs*17 0.23 TCGA-HT-7854-01 3 38518942 38518942 G A ACVR2B Missense_Mutation p.V73M 0.09 deleterious(0.05) benign(0.418) TCGA-HT-7854-01 4 94436513 94436513 G A GRID2 Missense_Mutation p.S715N 0.19 tolerated(1) benign(0.001) TCGA-HT-7854-01 5 140432731 140432731 G A PCDHB1 Missense_Mutation p.R559H 0.35 deleterious(0) possibly_damaging(0.614) TCGA-HT-7854-01 5 160061402 160061402 C T ATP10B Missense_Mutation p.R447H 0.36 deleterious(0) probably_damaging(0.992) TCGA-HT-7854-01 5 58489358 58489358 C T PDE4D Missense_Mutation p.G218R 0.20 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-HT-7854-01 5 90119413 90119413 G A GPR98 Silent p.K5456K 0.43 TCGA-HT-7854-01 7 48506641 48506641 C T ABCA13 Nonsense_Mutation p.Q4302* 0.20 TCGA-HT-7854-01 7 87183111 87183111 A G ABCB1 Missense_Mutation p.L322P 0.30 deleterious(0) possibly_damaging(0.722) TCGA-HT-7854-01 9 140114928 140114928 G A RNF208 Missense_Mutation p.A246V 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-HT-7854-01 X 70621406 70621406 G T TAF1 Missense_Mutation p.G1292V 0.47 deleterious(0) probably_damaging(1) TCGA-HT-7855-01 10 16553190 16553190 A C PTER Missense_Mutation p.I329L 0.05 tolerated(0.06) benign(0.077) TCGA-HT-7855-01 10 75184153 75184157 GTTAT - MSS51 3'UTR 0.33 TCGA-HT-7855-01 11 5345181 5345181 A G OR51B2 Missense_Mutation p.M116T 0.09 deleterious(0.01) benign(0.411) TCGA-HT-7855-01 11 57466855 57466857 AGA - ZDHHC5 In_Frame_Del p.E651del 0.12 TCGA-HT-7855-01 11 62037739 62037739 C T SCGB2A2 Silent p.Y17Y 0.46 TCGA-HT-7855-01 12 27234398 27234398 C A C12orf71 Missense_Mutation p.M173I 0.38 tolerated(0.7) benign(0.003) TCGA-HT-7855-01 12 54110173 54110175 CTC - CALCOCO1 In_Frame_Del p.E292del 0.48 TCGA-HT-7855-01 14 22038134 22038134 C T OR10G3 Missense_Mutation p.V248M 0.15 deleterious(0.04) benign(0.084) TCGA-HT-7855-01 14 39870639 39870639 G A FBXO33 Silent p.I379I 0.43 TCGA-HT-7855-01 14 50235181 50235181 C G KLHDC2 5'UTR 0.23 TCGA-HT-7855-01 14 79117539 79117539 C T NRXN3 5'UTR 0.11 TCGA-HT-7855-01 15 45561537 45561537 T C SLC28A2 Missense_Mutation p.V457A 0.21 deleterious(0.03) possibly_damaging(0.519) TCGA-HT-7855-01 16 27640072 27640072 T C KIAA0556 Silent p.N77N 0.24 TCGA-HT-7855-01 17 72949151 72949151 G A HID1 Nonsense_Mutation p.R668* 0.29 TCGA-HT-7855-01 17 7578542 7578542 G C TP53 Missense_Mutation p.L130V 0.91 deleterious(0) probably_damaging(0.997) TCGA-HT-7855-01 19 10445307 10445307 A G ICAM3 Silent p.N363N 0.38 TCGA-HT-7855-01 19 11106926 11106928 AGA - SMARCA4 In_Frame_Del p.K546del 0.23 TCGA-HT-7855-01 19 40023429 40023429 G C EID2B Missense_Mutation p.T5S 0.31 tolerated_low_confidence(0.24) benign(0.013) TCGA-HT-7855-01 19 8620581 8620581 C T MYO1F Missense_Mutation p.A35T 0.29 deleterious(0.02) benign(0.01) TCGA-HT-7855-01 1 152284999 152284999 C T FLG Missense_Mutation p.R788Q 0.27 possibly_damaging(0.685) TCGA-HT-7855-01 1 155931587 155931587 T C ARHGEF2 Missense_Mutation p.I445V 0.47 tolerated(0.13) benign(0.006) TCGA-HT-7855-01 1 158988254 158988254 C T IFI16 Missense_Mutation p.S262L 0.13 tolerated(0.06) probably_damaging(0.98) TCGA-HT-7855-01 1 173579162 173579162 C T ANKRD45 3'UTR 0.62 TCGA-HT-7855-01 1 201817721 201817721 A G IPO9 Silent p.T171T 0.40 TCGA-HT-7855-01 1 24077560 24077561 AA - TCEB3 Frame_Shift_Del p.K182Efs*14 0.19 TCGA-HT-7855-01 1 47655572 47655572 C T PDZK1IP1 Silent p.L11L 0.15 TCGA-HT-7855-01 1 89578261 89578263 TCT - GBP2 In_Frame_Del p.E418del 0.20 TCGA-HT-7855-01 20 18297241 18297242 GT - ZNF133 Frame_Shift_Del p.C582Wfs*58 0.09 TCGA-HT-7855-01 22 37469676 37469676 G C TMPRSS6 Missense_Mutation p.A493G 0.10 tolerated(0.07) benign(0.248) TCGA-HT-7855-01 2 102984511 102984511 T A IL18R1 Silent p.S95S 0.09 TCGA-HT-7855-01 2 106710502 106710505 CTTT - UXS1 Frame_Shift_Del p.K419Dfs*33 0.57 TCGA-HT-7855-01 2 208605430 208605433 AGTA - CCNYL1 Intron 0.17 TCGA-HT-7855-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.47 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-HT-7855-01 2 215843555 215843555 G A ABCA12 Silent p.Y1650Y 0.05 TCGA-HT-7855-01 3 122944084 122944085 - CCGATGGAGT SEC22A Frame_Shift_Ins p.N162Dfs*13 0.11 TCGA-HT-7855-01 3 126191130 126191133 ATAA - ZXDC Frame_Shift_Del p.F308Sfs*3 0.41 TCGA-HT-7855-01 3 133654661 133654661 G A SLCO2A1 Nonsense_Mutation p.R591* 0.12 TCGA-HT-7855-01 4 114277079 114277080 CT - ANK2 Frame_Shift_Del p.L2437Gfs*9 0.27 TCGA-HT-7855-01 4 40245505 40245505 G A RHOH Missense_Mutation p.V167I 0.56 tolerated(1) probably_damaging(0.989) TCGA-HT-7855-01 4 69203308 69203310 AGG - YTHDC1 In_Frame_Del p.P147del 0.39 TCGA-HT-7855-01 5 127449952 127449952 T C SLC12A2 Missense_Mutation p.S309P 0.29 tolerated(0.32) probably_damaging(0.962) TCGA-HT-7855-01 5 141018562 141018564 AGG - RELL2 In_Frame_Del p.G98del 0.22 TCGA-HT-7855-01 5 1422122 1422122 C T SLC6A3 Missense_Mutation p.V221M 0.08 deleterious(0.04) possibly_damaging(0.793) TCGA-HT-7855-01 5 14711097 14711097 C T ANKH 3'UTR 0.50 TCGA-HT-7855-01 5 154315435 154315438 AAGT - GEMIN5 Frame_Shift_Del p.T158Vfs*8 0.11 TCGA-HT-7855-01 5 159707584 159707584 G A CCNJL Silent p.V76V 0.05 TCGA-HT-7855-01 5 43488036 43488036 T C C5orf34 Silent p.E565E 0.17 TCGA-HT-7855-01 6 160199292 160199292 C G ACAT2 Missense_Mutation p.L335V 0.36 deleterious(0) possibly_damaging(0.889) TCGA-HT-7855-01 6 53883806 53883809 TCTT - MLIP 5'UTR 0.24 TCGA-HT-7855-01 6 7727731 7727731 G A BMP6 Silent p.P181P 0.19 TCGA-HT-7855-01 7 23871943 23871943 T A STK31 Nonsense_Mutation p.C1006* 0.52 TCGA-HT-7855-01 9 125281597 125281599 TTC - OR1J4 In_Frame_Del p.F62del 0.48 TCGA-HT-7855-01 X 76918950 76918951 CA - ATRX Frame_Shift_Del p.V1347Efs*2 0.40 TCGA-HT-7856-01 11 134018707 134018707 C T JAM3 Silent p.D297D 0.18 TCGA-HT-7856-01 11 35336644 35336644 G C SLC1A2 Missense_Mutation p.A79G 0.08 tolerated(0.15) benign(0.03) TCGA-HT-7856-01 12 53825209 53825209 C T AMHR2 Silent p.G558G 0.12 TCGA-HT-7856-01 12 56645997 56645997 A G ANKRD52 Silent p.S491S 0.11 TCGA-HT-7856-01 14 75416122 75416122 C T PGF Missense_Mutation p.G85S 0.12 deleterious(0) probably_damaging(1) TCGA-HT-7856-01 15 75688839 75688839 T C SIN3A Splice_Site p.X619_splice 0.10 TCGA-HT-7856-01 15 90631839 90631839 T A IDH2 Missense_Mutation p.R172W 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-HT-7856-01 16 29124405 29124405 C T RP11-426C22.5 5'Flank 0.17 TCGA-HT-7856-01 19 18248097 18248097 G A MAST3 Nonsense_Mutation p.W645* 0.09 TCGA-HT-7856-01 19 39026681 39026681 G A RYR1 Missense_Mutation p.G3854E 0.17 benign(0) TCGA-HT-7856-01 1 16377498 16377498 G A CLCNKB Silent p.P394P 0.16 TCGA-HT-7856-01 1 16559499 16559499 G A RSG1 Silent p.T93T 0.13 TCGA-HT-7856-01 1 36563054 36563054 G T COL8A2 3'UTR 0.12 TCGA-HT-7856-01 2 112777090 112777090 G A MERTK Missense_Mutation p.R727Q 0.12 deleterious(0) probably_damaging(0.973) TCGA-HT-7856-01 3 87325590 87325590 G A POU1F1 Missense_Mutation p.S8L 0.29 deleterious_low_confidence(0) benign(0.135) TCGA-HT-7856-01 7 105177177 105177177 A C RINT1 Missense_Mutation p.K85T 0.14 tolerated(0.1) benign(0.178) TCGA-HT-7856-01 7 105177182 105177182 C G RINT1 Missense_Mutation p.Q87E 0.16 tolerated(0.96) benign(0.002) TCGA-HT-7856-01 7 128040207 128040207 C T IMPDH1 Silent p.V272V 0.14 TCGA-HT-7857-01 11 113267965 113267965 C T ANKK1 Silent p.D286D 0.18 TCGA-HT-7857-01 11 36293264 36293264 G A COMMD9 3'Flank 0.20 TCGA-HT-7857-01 12 112888197 112888197 T A PTPN11 Missense_Mutation p.F71L 0.34 deleterious(0) probably_damaging(0.963) TCGA-HT-7857-01 12 50043069 50043069 A G FMNL3 Silent p.Y786Y 0.14 TCGA-HT-7857-01 15 24921605 24921605 C T NPAP1 Silent p.D197D 0.12 TCGA-HT-7857-01 15 86311637 86311637 C T KLHL25 Missense_Mutation p.E469K 0.11 tolerated(0.29) benign(0.037) TCGA-HT-7857-01 16 68293167 68293171 CGTGC - PLA2G15 Frame_Shift_Del p.F282Lfs*22 0.20 TCGA-HT-7857-01 16 89785502 89785502 G A VPS9D1 Silent p.Y36Y 0.14 TCGA-HT-7857-01 17 29576001 29576001 G A NF1 Splice_Site p.X1325_splice 0.55 TCGA-HT-7857-01 19 19740758 19740758 A T GMIP 3'UTR 0.18 TCGA-HT-7857-01 19 50981247 50981247 C G EMC10 Nonsense_Mutation p.S59* 0.08 TCGA-HT-7857-01 19 55237766 55237766 G A KIR3DL3 Nonsense_Mutation p.W106* 0.17 TCGA-HT-7857-01 1 94528252 94528252 G T ABCA4 Silent p.G606G 0.20 TCGA-HT-7857-01 2 54148047 54148049 AGG - PSME4 In_Frame_Del p.P747del 0.23 TCGA-HT-7857-01 4 106155166 106155166 C T TET2 Missense_Mutation p.P23S 0.20 tolerated(0.35) benign(0.33) TCGA-HT-7857-01 4 140262069 140262069 G A NAA15 Nonsense_Mutation p.W83* 0.33 TCGA-HT-7857-01 6 29407957 29407957 G T OR10C1 Missense_Mutation p.Q55H 0.11 tolerated(1) benign(0) TCGA-HT-7857-01 6 348272 348272 C T DUSP22 Nonsense_Mutation p.Q145* 0.09 TCGA-HT-7857-01 6 38810444 38810444 G A DNAH8 Missense_Mutation p.R1320H 0.26 benign(0.344) TCGA-HT-7857-01 7 133749244 133749244 A G EXOC4 Missense_Mutation p.K963R 0.22 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-HT-7857-01 8 103266680 103266680 G A UBR5 Silent p.P2750P 0.12 TCGA-HT-7857-01 X 107328043 107328043 G A PSMD10 3'UTR 0.20 TCGA-HT-7857-01 X 53455598 53455598 C T RIBC1 Intron 0.19 TCGA-HT-7857-01 X 76814303 76814306 ATAA - ATRX Frame_Shift_Del p.F2113Sfs*9 0.25 TCGA-HT-7858-01 10 74700992 74700992 C T PLA2G12B Missense_Mutation p.R134Q 0.06 tolerated(0.84) possibly_damaging(0.466) TCGA-HT-7858-01 12 55846753 55846753 C T OR6C2 Silent p.S252S 0.04 TCGA-HT-7858-01 16 58564252 58564252 C A CNOT1 Splice_Site p.X2060_splice 0.10 TCGA-HT-7858-01 17 6358837 6358837 A C PITPNM3 Missense_Mutation p.F916V 0.07 deleterious(0.03) benign(0.168) TCGA-HT-7858-01 17 72521999 72521999 C T CD300LB Silent p.T123T 0.30 TCGA-HT-7858-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.68 tolerated(0.11) benign(0.308) TCGA-HT-7858-01 17 76694917 76694917 C T CYTH1 Silent p.P228P 0.17 TCGA-HT-7858-01 18 24496119 24496119 G A CHST9 3'UTR 0.43 TCGA-HT-7858-01 18 28574169 28574169 G C DSC3 Missense_Mutation p.T888R 0.19 deleterious(0.01) possibly_damaging(0.632) TCGA-HT-7858-01 19 54466583 54466583 G A CACNG8 Missense_Mutation p.D63N 0.12 tolerated(0.38) benign(0.301) TCGA-HT-7858-01 19 5843987 5843987 G A FUT3 Silent p.D288D 0.26 TCGA-HT-7858-01 1 44415398 44415398 C G IPO13 Missense_Mutation p.L132V 0.35 deleterious(0.01) possibly_damaging(0.781) TCGA-HT-7858-01 20 23345745 23345745 G C GZF1 Missense_Mutation p.R242T 0.32 deleterious(0.01) probably_damaging(0.931) TCGA-HT-7858-01 20 46264191 46264191 G A NCOA3 Missense_Mutation p.S413N 0.06 tolerated(0.52) benign(0.001) TCGA-HT-7858-01 21 41710291 41710291 A C DSCAM Missense_Mutation p.I507S 0.33 deleterious(0) probably_damaging(0.974) TCGA-HT-7858-01 22 30416522 30416522 C T MTMR3 Silent p.C958C 0.29 TCGA-HT-7858-01 22 30886219 30886219 C T SEC14L4 Missense_Mutation p.D366N 0.08 deleterious(0.02) possibly_damaging(0.749) TCGA-HT-7858-01 2 197183694 197183694 G A HECW2 Silent p.C640C 0.06 TCGA-HT-7858-01 2 201400804 201400804 A G SGOL2 Missense_Mutation p.D109G 0.04 deleterious(0.04) benign(0.364) TCGA-HT-7858-01 2 209113113 209113113 G T IDH1 Missense_Mutation p.R132S 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HT-7858-01 2 45646937 45646937 C T SRBD1 Missense_Mutation p.V716I 0.30 tolerated(0.65) benign(0.029) TCGA-HT-7858-01 4 70152589 70152589 G C UGT2B28 Missense_Mutation p.K330N 0.08 deleterious(0) benign(0.021) TCGA-HT-7858-01 5 176738915 176738915 C A MXD3 5'UTR 0.15 TCGA-HT-7858-01 5 39203057 39203057 C T FYB Silent p.A12A 0.37 TCGA-HT-7858-01 7 149481078 149481078 G A SSPO RNA 0.36 TCGA-HT-7858-01 7 27134952 27134952 G A HOXA1 Missense_Mutation p.P194S 0.28 tolerated(0.08) probably_damaging(0.986) TCGA-HT-7858-01 X 76939540 76939540 T - ATRX Frame_Shift_Del p.K403Rfs*11 0.42 TCGA-HT-7860-01 10 102057297 102057297 G A PKD2L1 Silent p.S266S 0.43 TCGA-HT-7860-01 10 71883202 71883202 T C AIFM2 Missense_Mutation p.I85V 0.06 tolerated(0.23) benign(0.047) TCGA-HT-7860-01 10 81373779 81373779 G A SFTPA1 Silent p.R234R 0.53 TCGA-HT-7860-01 10 89717727 89717727 G C PTEN Missense_Mutation p.G251A 0.51 deleterious(0) probably_damaging(0.973) TCGA-HT-7860-01 11 1025338 1025338 G A MUC6 Silent p.N943N 0.34 TCGA-HT-7860-01 11 122928498 122928498 C G HSPA8 Missense_Mutation p.G629R 0.34 tolerated_low_confidence(0.08) probably_damaging(0.953) TCGA-HT-7860-01 11 123886716 123886716 C T OR10G4 Silent p.T145T 0.32 TCGA-HT-7860-01 11 55904779 55904779 C T OR8J3 Missense_Mutation p.R139Q 0.28 tolerated(0.23) benign(0.037) TCGA-HT-7860-01 12 108919286 108919286 T C SART3 Missense_Mutation p.H824R 0.27 deleterious(0.01) possibly_damaging(0.703) TCGA-HT-7860-01 12 112888199 112888199 C A PTPN11 Missense_Mutation p.A72D 0.33 deleterious(0.05) probably_damaging(0.993) TCGA-HT-7860-01 12 122091089 122091089 G A MORN3 Silent p.H180H 0.29 TCGA-HT-7860-01 12 14576907 14576907 G A ATF7IP Missense_Mutation p.V20M 0.31 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-HT-7860-01 12 15103604 15103604 C T ARHGDIB Missense_Mutation p.D15N 0.38 tolerated(0.19) benign(0.004) TCGA-HT-7860-01 12 52309035 52309035 C T ACVRL1 Missense_Mutation p.R267C 0.21 deleterious(0) probably_damaging(0.984) TCGA-HT-7860-01 12 52714809 52714809 G A KRT83 Missense_Mutation p.A104V 0.36 tolerated(0.43) benign(0.021) TCGA-HT-7860-01 13 113088868 113088868 G A SPACA7 3'UTR 0.43 TCGA-HT-7860-01 14 45623200 45623200 A G FANCM Silent p.Q376Q 0.30 TCGA-HT-7860-01 15 100657167 100657167 G A ADAMTS17 Silent p.V591V 0.40 TCGA-HT-7860-01 15 39544961 39544961 G A C15orf54 3'UTR 0.20 TCGA-HT-7860-01 15 73616057 73616057 T C HCN4 Missense_Mutation p.I793V 0.38 tolerated(0.36) unknown(0) TCGA-HT-7860-01 15 76075244 76075244 G A RN7SL319P 5'Flank 0.27 TCGA-HT-7860-01 16 24817937 24817937 C T TNRC6A Missense_Mutation p.R1458C 0.40 deleterious(0.05) benign(0.247) TCGA-HT-7860-01 16 67327473 67327473 C T KCTD19 Nonsense_Mutation p.W731* 0.08 TCGA-HT-7860-01 16 81155301 81155301 C T PKD1L2 RNA 0.24 TCGA-HT-7860-01 16 81171126 81171126 C T PKD1L2 5'Flank 0.41 TCGA-HT-7860-01 17 10318643 10318643 G C MYH8 Missense_Mutation p.A236G 0.33 deleterious(0) probably_damaging(0.999) TCGA-HT-7860-01 17 18927576 18927576 G A GRAP Silent p.I140I 0.25 TCGA-HT-7860-01 17 29483060 29483064 GGAAT - NF1 Frame_Shift_Del p.E41Sfs*24 0.40 TCGA-HT-7860-01 17 29664446 29664446 T A NF1 Nonsense_Mutation p.L2163* 0.36 TCGA-HT-7860-01 17 29664466 29664466 G C NF1 Missense_Mutation p.V2170L 0.37 deleterious(0.01) possibly_damaging(0.891) TCGA-HT-7860-01 17 39567583 39567583 G A AC003958.2 RNA 0.56 TCGA-HT-7860-01 18 14478588 14478588 C T CXADRP3 RNA 0.42 TCGA-HT-7860-01 18 60052048 60052048 C T TNFRSF11A Silent p.G544G 0.28 TCGA-HT-7860-01 19 10687903 10687903 C T AP1M2 Missense_Mutation p.V340I 0.16 tolerated(0.07) benign(0.005) TCGA-HT-7860-01 19 12977541 12977541 C T MAST1 Missense_Mutation p.R702C 0.28 deleterious(0) possibly_damaging(0.794) TCGA-HT-7860-01 19 16687579 16687579 C T MED26 Silent p.P354P 0.33 TCGA-HT-7860-01 19 2433894 2433894 G A LMNB2 Missense_Mutation p.S471L 0.26 deleterious(0.01) benign(0.102) TCGA-HT-7860-01 19 39212280 39212280 C T ACTN4 Missense_Mutation p.A465V 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-HT-7860-01 19 44222962 44222962 G A IRGC Silent p.A84A 0.23 TCGA-HT-7860-01 19 49518835 49518835 G A RUVBL2 Missense_Mutation p.E420K 0.26 tolerated(0.48) benign(0.006) TCGA-HT-7860-01 19 49548305 49548305 C T CGB5 Silent p.F84F 0.25 TCGA-HT-7860-01 19 50939931 50939931 C T MYBPC2 Missense_Mutation p.R135C 0.22 deleterious(0) probably_damaging(1) TCGA-HT-7860-01 19 54746595 54746595 C T LILRA6 Silent p.T2T 0.09 TCGA-HT-7860-01 19 56539531 56539531 C T NLRP5 Silent p.D644D 0.24 TCGA-HT-7860-01 19 6416895 6416895 T G KHSRP Splice_Site p.X395_splice 0.28 TCGA-HT-7860-01 19 7705819 7705819 G A STXBP2 Missense_Mutation p.R120H 0.23 deleterious(0.04) benign(0.04) TCGA-HT-7860-01 19 9063480 9063480 G A MUC16 Missense_Mutation p.T7989I 0.26 unknown(0) TCGA-HT-7860-01 19 9065959 9065959 G T MUC16 Missense_Mutation p.L7163M 0.33 unknown(0) TCGA-HT-7860-01 1 147955205 147955205 C T PPIAL4A Missense_Mutation p.R47H 0.28 tolerated_low_confidence(0.05) benign(0) TCGA-HT-7860-01 1 152671462 152671462 C T LCE2A Nonsense_Mutation p.R29* 0.36 TCGA-HT-7860-01 1 162746049 162746049 C A DDR2 Silent p.I724I 0.30 TCGA-HT-7860-01 1 198687263 198687263 A T PTPRC Silent p.S497S 0.40 TCGA-HT-7860-01 1 208272302 208272302 C A PLXNA2 Missense_Mutation p.R540S 0.36 deleterious(0.05) benign(0.002) TCGA-HT-7860-01 1 24671385 24671385 A C GRHL3 Splice_Site p.X474_splice 0.32 TCGA-HT-7860-01 1 43675514 43675514 G A WDR65 Missense_Mutation p.R619H 0.37 deleterious(0) probably_damaging(0.993) TCGA-HT-7860-01 1 45481171 45481171 G A UROD 3'UTR 0.44 TCGA-HT-7860-01 1 55181589 55181589 A G TTC4 Missense_Mutation p.Q3R 0.33 tolerated_low_confidence(0.64) benign(0) TCGA-HT-7860-01 1 89889882 89889882 A G GBP1P1 RNA 0.33 TCGA-HT-7860-01 20 31654682 31654682 A G BPIFB3 Missense_Mutation p.E326G 0.19 deleterious(0.03) possibly_damaging(0.803) TCGA-HT-7860-01 20 52773714 52773714 C T CYP24A1 3'UTR 0.33 TCGA-HT-7860-01 20 52831957 52831957 A C PFDN4 Missense_Mutation p.Q84P 0.22 deleterious(0) probably_damaging(0.962) TCGA-HT-7860-01 20 54941327 54941327 C T FAM210B Missense_Mutation p.P188L 0.20 deleterious(0) probably_damaging(0.986) TCGA-HT-7860-01 20 60793682 60793682 G A HRH3 Silent p.Y94Y 0.22 TCGA-HT-7860-01 21 43810090 43810090 T C TMPRSS3 Missense_Mutation p.I51V 0.31 tolerated(0.43) benign(0.008) TCGA-HT-7860-01 2 179577501 179577501 G T TTN Nonsense_Mutation p.S9084* 0.25 TCGA-HT-7860-01 2 187693519 187693519 T A ZSWIM2 Splice_Site p.X366_splice 0.33 TCGA-HT-7860-01 2 234627498 234627498 G A UGT1A4 Missense_Mutation p.R11Q 0.26 tolerated(0.33) benign(0) TCGA-HT-7860-01 2 29295046 29295046 G A C2orf71 Silent p.D694D 0.31 TCGA-HT-7860-01 2 63182658 63182658 T C EHBP1 Silent p.L810L 0.29 TCGA-HT-7860-01 2 71576931 71576931 T A ZNF638 Missense_Mutation p.S283T 0.33 tolerated(0.07) benign(0.01) TCGA-HT-7860-01 2 96962796 96962796 C T SNRNP200 Missense_Mutation p.V464M 0.40 deleterious(0) benign(0.444) TCGA-HT-7860-01 2 98999852 98999852 G A CNGA3 Missense_Mutation p.A133T 0.27 tolerated(0.44) benign(0.006) TCGA-HT-7860-01 3 140401985 140401985 C T TRIM42 Silent p.I341I 0.29 TCGA-HT-7860-01 3 98503881 98503881 T A ST3GAL6 Missense_Mutation p.I143K 0.37 deleterious(0) probably_damaging(0.998) TCGA-HT-7860-01 4 100009864 100009864 T C ADH5 5'UTR 0.35 TCGA-HT-7860-01 4 30725552 30725552 C A PCDH7 Missense_Mutation p.H836Q 0.40 deleterious(0) probably_damaging(0.98) TCGA-HT-7860-01 5 102513667 102513667 C G PPIP5K2 Missense_Mutation p.P914A 0.22 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-HT-7860-01 5 139941733 139941733 T A APBB3 Missense_Mutation p.Q193L 0.33 deleterious(0) probably_damaging(0.996) TCGA-HT-7860-01 5 140869027 140869027 T C PCDHGC5 Missense_Mutation p.Y74H 0.50 tolerated(0.24) benign(0.005) TCGA-HT-7860-01 5 149782733 149782733 G A CD74 Silent p.N256N 0.25 TCGA-HT-7860-01 5 156476111 156476111 G A HAVCR1 Missense_Mutation p.T240M 0.34 tolerated(0.14) benign(0.007) TCGA-HT-7860-01 5 159546021 159546022 - G PWWP2A Frame_Shift_Ins p.A126Gfs*46 0.35 TCGA-HT-7860-01 5 35697831 35697831 T C SPEF2 Silent p.L693L 0.35 TCGA-HT-7860-01 6 50683145 50683145 C A TFAP2D Missense_Mutation p.A119E 0.35 tolerated(0.21) benign(0.077) TCGA-HT-7860-01 7 142658923 142658923 G A KEL Missense_Mutation p.R14C 0.24 tolerated_low_confidence(0.18) benign(0.083) TCGA-HT-7860-01 7 144096940 144096940 C T NOBOX Missense_Mutation p.R355H 0.29 deleterious(0) probably_damaging(0.999) TCGA-HT-7860-01 7 20198442 20198442 G T MACC1 Silent p.L514L 0.28 TCGA-HT-7860-01 8 16026364 16026364 C T MSR1 Nonsense_Mutation p.W78* 0.32 TCGA-HT-7860-01 8 18490301 18490301 T C PSD3 Silent p.K744K 0.48 TCGA-HT-7860-01 8 22969288 22969288 T C TNFRSF10C Missense_Mutation p.V39A 0.34 tolerated_low_confidence(0.88) benign(0.028) TCGA-HT-7860-01 8 37686441 37686441 C T GPR124 Missense_Mutation p.P125L 0.37 deleterious(0) possibly_damaging(0.869) TCGA-HT-7860-01 9 42368597 42368597 C T ANKRD20A2 Silent p.D61D 0.14 TCGA-HT-7860-01 9 79118741 79118741 A G GCNT1 3'UTR 0.20 TCGA-HT-7860-01 X 128724289 128724289 G A OCRL 3'UTR 0.35 TCGA-HT-7860-01 X 134715064 134715064 G A DDX26B Missense_Mutation p.A825T 0.30 tolerated(0.07) benign(0.066) TCGA-HT-7860-01 X 153172155 153172155 C T AVPR2 Silent p.S363S 0.21 TCGA-HT-7860-01 X 153626948 153626948 G A RPL10 Intron 0.43 TCGA-HT-7860-01 X 2748132 2748132 G A GYG2 5'UTR 0.41 TCGA-HT-7860-01 X 2836028 2836028 G A ARSD Missense_Mutation p.A227V 0.26 tolerated(0.11) benign(0.069) TCGA-HT-7860-01 X 30237647 30237647 C T MAGEB2 Missense_Mutation p.A317V 0.35 deleterious(0.03) benign(0.119) TCGA-HT-7860-01 X 40518771 40518771 T C MED14 Missense_Mutation p.N1258S 0.38 tolerated(0.44) benign(0.009) TCGA-HT-7873-01 10 52596001 52596002 - T A1CF Frame_Shift_Ins p.T154Nfs*16 0.22 TCGA-HT-7873-01 13 36049234 36049234 C G MAB21L1 Missense_Mutation p.E348Q 0.31 tolerated(0.16) benign(0.058) TCGA-HT-7873-01 14 19562088 19562088 A G POTEG Missense_Mutation p.D302G 0.85 deleterious(0) probably_damaging(0.998) TCGA-HT-7873-01 14 24787720 24787720 G A ADCY4 Missense_Mutation p.R1046W 0.31 deleterious(0) probably_damaging(1) TCGA-HT-7873-01 14 78161070 78161102 ACAAGACTTACCTCAGGAACTCTTTGCTCTGTT - ALKBH1 Splice_Site p.X145_splice 0.10 TCGA-HT-7873-01 15 101425495 101425495 C T ALDH1A3 Silent p.H41H 0.31 TCGA-HT-7873-01 15 72172772 72172772 G A MYO9A Silent p.N1842N 0.31 TCGA-HT-7873-01 16 69726213 69726213 G A NFAT5 Missense_Mutation p.V829I 0.34 probably_damaging(0.986) TCGA-HT-7873-01 17 19246507 19246507 A G B9D1 3'UTR 0.29 TCGA-HT-7873-01 17 56342147 56342147 C T LPO Missense_Mutation p.P444L 0.41 tolerated(0.26) possibly_damaging(0.623) TCGA-HT-7873-01 17 7573996 7574003 AGCTCTCG - TP53 Frame_Shift_Del p.R342Efs*2 0.72 TCGA-HT-7873-01 18 48703396 48703396 G A MEX3C Silent p.R435R 0.06 TCGA-HT-7873-01 19 1481915 1481915 C T PCSK4 Missense_Mutation p.R704H 0.35 tolerated(0.27) benign(0) TCGA-HT-7873-01 19 58453810 58453810 T C ZNF256 Silent p.A122A 0.35 TCGA-HT-7873-01 1 157105467 157105467 T A ETV3 Missense_Mutation p.E27V 0.38 deleterious(0) possibly_damaging(0.874) TCGA-HT-7873-01 1 18809173 18809173 G A KLHDC7A Silent p.T566T 0.32 TCGA-HT-7873-01 1 232538163 232538163 C T SIPA1L2 Missense_Mutation p.R1666Q 0.45 tolerated(0.07) probably_damaging(0.992) TCGA-HT-7873-01 1 27440680 27440680 G A SLC9A1 Silent p.G150G 0.41 TCGA-HT-7873-01 1 82434955 82434955 T C LPHN2 Missense_Mutation p.F856L 0.27 tolerated(0.13) probably_damaging(0.995) TCGA-HT-7873-01 20 23017075 23017075 C T SSTR4 Missense_Mutation p.R319C 0.46 deleterious(0) possibly_damaging(0.88) TCGA-HT-7873-01 22 16279207 16279207 T C POTEH Missense_Mutation p.D339G 0.06 deleterious(0) probably_damaging(1) TCGA-HT-7873-01 22 41252652 41252652 G A ST13 5'UTR 0.59 TCGA-HT-7873-01 2 160050870 160050870 G A TANC1 Missense_Mutation p.E949K 0.36 deleterious(0) probably_damaging(0.999) TCGA-HT-7873-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7873-01 2 219846970 219846970 G C FEV Missense_Mutation p.Q46E 0.57 deleterious(0) probably_damaging(0.999) TCGA-HT-7873-01 2 231150502 231150502 G A SP140 Missense_Mutation p.E534K 0.39 tolerated(0.55) benign(0.119) TCGA-HT-7873-01 3 85984926 85984926 C G CADM2 Nonsense_Mutation p.S230* 0.40 TCGA-HT-7873-01 5 125885898 125885898 G A ALDH7A1 Missense_Mutation p.R469C 0.26 deleterious(0.01) probably_damaging(0.914) TCGA-HT-7873-01 5 40955639 40955639 A G C7 Missense_Mutation p.Q415R 0.04 tolerated(0.42) benign(0.008) TCGA-HT-7873-01 6 84799071 84799071 G A MRAP2 Silent p.K163K 0.42 TCGA-HT-7873-01 7 48335325 48335325 A C ABCA13 Missense_Mutation p.N2995T 0.32 benign(0.002) TCGA-HT-7873-01 8 72946552 72946552 C A TRPA1 Missense_Mutation p.R872S 0.42 tolerated(0.13) benign(0.04) TCGA-HT-7873-01 8 87443690 87443690 A C WWP1 Silent p.T481T 0.23 TCGA-HT-7873-01 9 138379182 138379182 C T PPP1R26 Silent p.T942T 0.53 TCGA-HT-7873-01 9 21332937 21332937 A C KLHL9 3'UTR 0.33 TCGA-HT-7873-01 X 140785749 140785749 C T SPANXD Missense_Mutation p.R56K 0.04 tolerated_low_confidence(0.21) benign(0.002) TCGA-HT-7873-01 X 76938029 76938029 G - ATRX Frame_Shift_Del p.R907Dfs*63 0.46 TCGA-HT-7874-01 10 95072807 95072807 G A MYOF Silent p.Y1953Y 0.06 TCGA-HT-7874-01 11 64112395 64112395 G A CCDC88B Silent p.R794R 0.33 TCGA-HT-7874-01 12 132466834 132466834 G A EP400 Silent p.Q580Q 0.16 TCGA-HT-7874-01 19 15769595 15769595 T A CYP4F3 Missense_Mutation p.F458Y 0.05 tolerated(0.08) possibly_damaging(0.492) TCGA-HT-7874-01 19 41826329 41826329 A G CCDC97 Missense_Mutation p.M289V 0.18 deleterious(0) probably_damaging(0.994) TCGA-HT-7874-01 19 54395814 54395814 C G PRKCG Missense_Mutation p.D246E 0.17 deleterious(0.03) possibly_damaging(0.652) TCGA-HT-7874-01 1 86919122 86919122 C T CLCA2 Silent p.S742S 0.07 TCGA-HT-7874-01 20 50139839 50139839 G A NFATC2 Missense_Mutation p.S314L 0.19 tolerated(0.38) benign(0.102) TCGA-HT-7874-01 21 18966541 18966541 G A BTG3 Missense_Mutation p.P254L 0.07 tolerated(0.22) possibly_damaging(0.798) TCGA-HT-7874-01 22 44377307 44377307 C T SAMM50 Missense_Mutation p.P325S 0.07 tolerated(0.35) benign(0.016) TCGA-HT-7874-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7874-01 3 146173222 146173222 T C PLSCR2 Missense_Mutation p.N115S 0.05 tolerated(0.07) probably_damaging(0.919) TCGA-HT-7874-01 3 178952073 178952073 T C PIK3CA Missense_Mutation p.M1043T 0.18 deleterious(0.01) benign(0.199) TCGA-HT-7874-01 4 110745576 110745576 A G GAR1 Missense_Mutation p.R215G 0.05 deleterious_low_confidence(0) unknown(0) TCGA-HT-7874-01 4 55960997 55960997 C G KDR Missense_Mutation p.K981N 0.18 tolerated(0.2) benign(0.333) TCGA-HT-7874-01 4 70070265 70070265 T C UGT2B11 Missense_Mutation p.D398G 0.06 deleterious(0) probably_damaging(0.999) TCGA-HT-7874-01 5 137089402 137089402 G T HNRNPA0 Missense_Mutation p.F118L 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-HT-7874-01 5 140181778 140181778 T G PCDHA3 Missense_Mutation p.D332E 0.16 deleterious_low_confidence(0.01) benign(0.028) TCGA-HT-7874-01 5 141035828 141035828 G A ARAP3 Missense_Mutation p.R1269W 0.06 deleterious(0) probably_damaging(0.994) TCGA-HT-7874-01 5 41015559 41015559 C A MROH2B Missense_Mutation p.R969I 0.19 deleterious(0.02) benign(0.188) TCGA-HT-7874-01 6 139229869 139229869 C G REPS1 Missense_Mutation p.D717H 0.08 deleterious(0.02) possibly_damaging(0.694) TCGA-HT-7874-01 6 26094421 26094421 C T HFE Silent p.A338A 0.15 TCGA-HT-7874-01 6 33690730 33690730 C G IP6K3 Missense_Mutation p.E334Q 0.14 deleterious(0.04) benign(0.305) TCGA-HT-7874-01 7 72925148 72925148 G A BAZ1B Missense_Mutation p.R48C 0.26 deleterious(0) probably_damaging(0.991) TCGA-HT-7874-01 7 73513495 73513495 T C LIMK1 Missense_Mutation p.S179P 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-HT-7874-01 X 22291314 22291314 G A ZNF645 Missense_Mutation p.R69Q 0.20 deleterious(0.04) benign(0.012) TCGA-HT-7874-01 X 50127815 50127815 A C DGKK RNA 0.11 TCGA-HT-7874-01 X 50377684 50377685 - G SHROOM4 Frame_Shift_Ins p.T464Yfs*6 0.13 TCGA-HT-7874-01 X 77913195 77913195 A T ZCCHC5 Silent p.T241T 0.22 TCGA-HT-7874-01 X 99662610 99662610 T C PCDH19 Missense_Mutation p.H329R 0.21 deleterious(0) probably_damaging(1) TCGA-HT-7875-01 10 13655742 13655744 TTC - PRPF18 In_Frame_Del p.L196del 0.24 TCGA-HT-7875-01 10 82280607 82280607 G A TSPAN14 3'UTR 0.07 TCGA-HT-7875-01 11 113126648 113126649 CT - NCAM1 Frame_Shift_Del p.S676Yfs*2 0.44 TCGA-HT-7875-01 11 118499068 118499068 G A PHLDB1 Missense_Mutation p.G510E 0.09 deleterious(0.03) benign(0.382) TCGA-HT-7875-01 11 57982884 57982884 C T OR1S1 Missense_Mutation p.P223L 0.08 deleterious(0) probably_damaging(1) TCGA-HT-7875-01 11 94278274 94278274 C T FUT4 Silent p.D325D 0.28 TCGA-HT-7875-01 12 11061883 11061883 C T TAS2R13 Silent p.L5L 0.14 TCGA-HT-7875-01 12 42860093 42860093 T A PRICKLE1 Silent p.G226G 0.12 TCGA-HT-7875-01 13 20577051 20577052 TT - ZMYM2 Frame_Shift_Del p.L304Ifs*8 0.36 TCGA-HT-7875-01 14 91700786 91700786 C T GPR68 Silent p.A203A 0.22 TCGA-HT-7875-01 15 25453232 25453232 G A SNORD115-21 RNA 0.03 TCGA-HT-7875-01 15 57526268 57526269 CA - TCF12 Frame_Shift_Del p.Q334Dfs*3 0.21 TCGA-HT-7875-01 15 57565414 57565416 TCA - TCF12 In_Frame_Del p.H645del 0.67 TCGA-HT-7875-01 16 30485546 30485546 C T ITGAL Missense_Mutation p.R31W 0.30 deleterious(0.02) benign(0.003) TCGA-HT-7875-01 16 30616099 30616101 GAG - ZNF689 In_Frame_Del p.S330del 0.27 TCGA-HT-7875-01 16 47007540 47007540 G C DNAJA2 5'UTR 0.09 TCGA-HT-7875-01 17 37565972 37565972 T A MED1 Silent p.P834P 0.19 TCGA-HT-7875-01 17 62574689 62574689 T C SMURF2 Missense_Mutation p.R260G 0.37 deleterious(0) probably_damaging(0.948) TCGA-HT-7875-01 19 33392289 33392292 CTTT - CEP89 Frame_Shift_Del p.E531Gfs*7 0.33 TCGA-HT-7875-01 19 42796331 42796331 C T CIC Nonsense_Mutation p.Q994* 0.39 TCGA-HT-7875-01 19 42796905 42796906 TG - CIC Frame_Shift_Del p.V1122Gfs*28 0.19 TCGA-HT-7875-01 19 42799063 42799065 AGA - CIC In_Frame_Del p.K1517del 0.12 TCGA-HT-7875-01 19 45281321 45281321 C T CBLC Missense_Mutation p.R45W 0.10 deleterious(0.01) possibly_damaging(0.908) TCGA-HT-7875-01 1 152286155 152286155 C T FLG Missense_Mutation p.G403R 0.19 probably_damaging(0.949) TCGA-HT-7875-01 1 185962530 185962530 A G HMCN1 Intron 0.50 TCGA-HT-7875-01 1 235345098 235345098 T C ARID4B Missense_Mutation p.T1046A 0.55 tolerated(0.16) benign(0.001) TCGA-HT-7875-01 1 24080638 24080638 G A TCEB3 Missense_Mutation p.R555K 0.87 deleterious(0) probably_damaging(0.963) TCGA-HT-7875-01 1 9165733 9165733 C T GPR157 Missense_Mutation p.A202T 0.19 tolerated(0.11) probably_damaging(0.954) TCGA-HT-7875-01 22 24176338 24176338 C T SMARCB1 Missense_Mutation p.R377C 0.25 deleterious(0) probably_damaging(1) TCGA-HT-7875-01 2 1491722 1491722 C A TPO Missense_Mutation p.A576E 0.47 deleterious(0) probably_damaging(0.997) TCGA-HT-7875-01 2 149227787 149227787 G A MBD5 Missense_Mutation p.V759M 0.47 tolerated(1) possibly_damaging(0.468) TCGA-HT-7875-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7875-01 3 48609570 48609570 C T COL7A1 Missense_Mutation p.R2338Q 0.46 probably_damaging(0.997) TCGA-HT-7875-01 3 88188745 88188748 ACTT - ZNF654 Frame_Shift_Del p.T97Lfs*22 0.13 TCGA-HT-7875-01 4 143094941 143094941 G A INPP4B Silent p.Y401Y 0.05 TCGA-HT-7875-01 4 46979112 46979112 C T GABRA4 Missense_Mutation p.M181I 0.17 deleterious(0) probably_damaging(0.997) TCGA-HT-7875-01 4 56301648 56301648 T C CLOCK Silent p.Q825Q 0.42 TCGA-HT-7875-01 4 72994632 72994632 A T NPFFR2 Silent p.I210I 0.41 TCGA-HT-7875-01 5 10426541 10426541 A T MARCH6 Missense_Mutation p.I805F 0.10 tolerated(0.09) possibly_damaging(0.866) TCGA-HT-7875-01 5 176520245 176520245 G A FGFR4 Silent p.G388G 0.06 TCGA-HT-7875-01 6 10955433 10955436 AAGA - SYCP2L Frame_Shift_Del p.R682Sfs*11 0.24 TCGA-HT-7875-01 7 100678653 100678653 C T MUC17 Missense_Mutation p.P1319L 0.06 unknown(0) TCGA-HT-7875-01 7 92098299 92098299 G T ERVW-1 Missense_Mutation p.P466H 0.09 deleterious(0) possibly_damaging(0.665) TCGA-HT-7875-01 8 27472227 27472227 A G CLU 5'UTR 0.50 TCGA-HT-7875-01 9 116811917 116811917 G A ZNF618 Missense_Mutation p.G686S 0.09 tolerated(0.05) probably_damaging(1) TCGA-HT-7875-01 9 139412381 139412381 G A NOTCH1 Missense_Mutation p.P422S 0.07 deleterious(0) probably_damaging(1) TCGA-HT-7877-01 10 103799877 103799877 G A C10orf76 5'UTR 0.32 TCGA-HT-7877-01 12 15095522 15095522 G A ARHGDIB Silent p.D180D 0.29 TCGA-HT-7877-01 12 57423554 57423554 G A MYO1A Silent p.A898A 0.07 TCGA-HT-7877-01 13 99076871 99076871 C T FARP1 Silent p.G624G 0.16 TCGA-HT-7877-01 15 40590542 40590542 C T PLCB2 Missense_Mutation p.R346H 0.41 deleterious(0.01) probably_damaging(1) TCGA-HT-7877-01 15 42178327 42178327 C T SPTBN5 Missense_Mutation p.A376T 0.32 benign(0.058) TCGA-HT-7877-01 17 40926665 40926665 A G VPS25 Silent p.R67R 0.23 TCGA-HT-7877-01 19 42791715 42791715 C T CIC Missense_Mutation p.R201W 0.18 probably_damaging(1) TCGA-HT-7877-01 1 200842872 200842872 G T GPR25 Missense_Mutation p.G236V 0.06 deleterious(0) probably_damaging(0.954) TCGA-HT-7877-01 21 10906911 10906911 G A TPTE Silent p.S550S 0.06 TCGA-HT-7877-01 22 38087302 38087302 C T NOL12 Missense_Mutation p.R201C 0.34 deleterious(0) probably_damaging(0.988) TCGA-HT-7877-01 2 132021210 132021210 C T POTEE Missense_Mutation p.R728W 0.25 deleterious_low_confidence(0.01) benign(0.236) TCGA-HT-7877-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7877-01 2 96959095 96959116 TAGAAAGGTGGCTACATCTTCA - SNRNP200 Frame_Shift_Del p.E659Vfs*39 0.22 TCGA-HT-7877-01 6 44270856 44270856 C T AARS2 Silent p.L734L 0.06 TCGA-HT-7877-01 X 129306042 129306042 G A RAB33A Silent p.A2A 0.33 TCGA-HT-7877-01 X 149638921 149638921 C G MAMLD1 Missense_Mutation p.P334R 0.21 deleterious(0) probably_damaging(0.959) TCGA-HT-7877-01 X 62893977 62893977 G A ARHGEF9 Nonsense_Mutation p.R289* 0.06 TCGA-HT-7879-01 10 18690025 18690025 T C CACNB2 Intron 0.44 TCGA-HT-7879-01 10 26589805 26589805 G A GAD2 Missense_Mutation p.R558H 0.47 deleterious(0) probably_damaging(0.999) TCGA-HT-7879-01 12 56350746 56350746 C T PMEL Silent p.T447T 0.39 TCGA-HT-7879-01 16 1265549 1265549 G A CACNA1H Missense_Mutation p.G1734S 0.43 deleterious(0) probably_damaging(1) TCGA-HT-7879-01 17 7577150 7577151 TT - TP53 Frame_Shift_Del p.N263Sfs*8 0.37 TCGA-HT-7879-01 17 7578271 7578271 T A TP53 Missense_Mutation p.H193L 0.33 deleterious(0) probably_damaging(1) TCGA-HT-7879-01 19 6270683 6270683 C A MLLT1 Missense_Mutation p.V34L 0.09 deleterious(0.02) possibly_damaging(0.876) TCGA-HT-7879-01 1 142803498 142803498 G T RP11-423O2.5 RNA 0.09 TCGA-HT-7879-01 1 248202535 248202535 C T OR2L2 3'UTR 0.30 TCGA-HT-7879-01 20 35177631 35177631 C T MYL9 Silent p.G166G 0.11 TCGA-HT-7879-01 22 29694857 29694857 C T EWSR1 Nonsense_Mutation p.R523* 0.35 TCGA-HT-7879-01 2 132241765 132241765 C G MZT2A Missense_Mutation p.G116R 0.08 tolerated(0.1) possibly_damaging(0.797) TCGA-HT-7879-01 2 153003685 153003685 T C STAM2 Silent p.A146A 0.43 TCGA-HT-7879-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7879-01 4 141677165 141677165 T C TBC1D9 Missense_Mutation p.N12S 0.25 tolerated(0.08) benign(0.003) TCGA-HT-7879-01 4 159443066 159443066 C T RXFP1 5'UTR 0.68 TCGA-HT-7879-01 5 54429276 54429276 C T CDC20B Missense_Mutation p.V221M 0.39 tolerated(0.09) possibly_damaging(0.647) TCGA-HT-7879-01 6 25652713 25652713 G A SCGN Missense_Mutation p.E28K 0.34 tolerated(0.07) benign(0.211) TCGA-HT-7879-01 6 51897948 51897948 T C PKHD1 Missense_Mutation p.I1082V 0.37 tolerated(0.54) benign(0.006) TCGA-HT-7879-01 7 111405275 111405275 T C DOCK4 Missense_Mutation p.M1298V 0.20 deleterious(0.04) possibly_damaging(0.625) TCGA-HT-7879-01 9 114989706 114989706 T C PTBP3 Missense_Mutation p.H484R 0.43 deleterious(0) probably_damaging(0.997) TCGA-HT-7879-01 X 70767813 70767813 T G OGT Missense_Mutation p.N196K 0.88 deleterious(0) probably_damaging(1) TCGA-HT-7879-01 X 76938001 76938001 G - ATRX Frame_Shift_Del p.A916Vfs*54 0.42 TCGA-HT-7880-01 10 73827431 73827431 G T SPOCK2 Missense_Mutation p.L217I 0.07 tolerated(0.14) possibly_damaging(0.874) TCGA-HT-7880-01 17 29562657 29562660 TGTT - NF1 Frame_Shift_Del p.F1247Ifs*18 0.09 TCGA-HT-7880-01 17 40269492 40269492 C T KAT2A Silent p.L517L 0.07 TCGA-HT-7880-01 17 7577545 7577545 T C TP53 Missense_Mutation p.M246V 0.11 deleterious(0) probably_damaging(0.947) TCGA-HT-7880-01 1 214557534 214557534 G A PTPN14 Missense_Mutation p.T555M 0.08 deleterious(0.01) benign(0.249) TCGA-HT-7880-01 20 58439418 58439418 C T SYCP2 Missense_Mutation p.R1514H 0.15 deleterious(0.05) benign(0.042) TCGA-HT-7880-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7880-01 9 131475882 131475882 G C PKN3 Silent p.L399L 0.06 TCGA-HT-7880-01 X 148037448 148037448 A G AFF2 Missense_Mutation p.T625A 0.13 tolerated(0.11) probably_damaging(0.992) TCGA-HT-7880-01 X 76937900 76937900 T A ATRX Nonsense_Mutation p.K950* 0.19 TCGA-HT-7880-01 X 76938788 76938788 G T ATRX Silent p.R654R 0.14 TCGA-HT-7881-01 10 118424279 118424279 A G C10orf82 Missense_Mutation p.Y152H 0.04 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-HT-7881-01 14 105399118 105399118 G A PLD4 Silent p.S446S 0.20 TCGA-HT-7881-01 14 74442654 74442654 T C ENTPD5 Missense_Mutation p.K236R 0.07 tolerated(0.22) benign(0.035) TCGA-HT-7881-01 15 102303109 102303109 G T DNM1P47 RNA 0.14 TCGA-HT-7881-01 15 99673302 99673302 G A SYNM 3'UTR 0.12 TCGA-HT-7881-01 16 2139950 2139950 G A PKD1 Silent p.N4230N 0.15 TCGA-HT-7881-01 17 27893250 27893250 G A ABHD15 Silent p.S245S 0.09 TCGA-HT-7881-01 19 36268762 36268762 T G ARHGAP33 Silent p.A47A 0.05 TCGA-HT-7881-01 1 13718582 13718582 G - PRAMEF17 Frame_Shift_Del p.A349Lfs*8 0.09 TCGA-HT-7881-01 1 169394121 169394121 G A CCDC181 Silent p.Y15Y 0.15 TCGA-HT-7881-01 20 23065825 23065825 C T CD93 Silent p.Q335Q 0.06 TCGA-HT-7881-01 21 37833827 37833827 C T CLDN14 Nonsense_Mutation p.W56* 0.10 TCGA-HT-7881-01 22 50898008 50898008 G A SBF1 Silent p.P1193P 0.08 TCGA-HT-7881-01 2 198352636 198352636 A T HSPD1 Silent p.A505A 0.06 TCGA-HT-7881-01 2 198950679 198950679 C T PLCL1 Missense_Mutation p.T813M 0.11 deleterious(0) probably_damaging(0.997) TCGA-HT-7881-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7881-01 3 114070191 114070191 G C ZBTB20 Missense_Mutation p.S245W 0.10 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-HT-7881-01 4 6599987 6599987 G A MAN2B2 Silent p.T437T 0.06 TCGA-HT-7881-01 5 21975457 21975457 T C CDH12 Missense_Mutation p.K90R 0.09 tolerated(0.2) benign(0.263) TCGA-HT-7881-01 6 116758569 116758569 A T DSE 3'UTR 0.10 TCGA-HT-7881-01 7 148801044 148801044 C T ZNF425 Missense_Mutation p.C640Y 0.08 deleterious(0) probably_damaging(0.987) TCGA-HT-7881-01 7 17379139 17379139 A T AHR Missense_Mutation p.N564Y 0.22 deleterious(0) benign(0.308) TCGA-HT-7882-01 10 118364948 118364948 T C PNLIPRP1 Missense_Mutation p.L408P 0.07 deleterious(0.01) possibly_damaging(0.834) TCGA-HT-7882-01 10 129902797 129902797 T C MKI67 Missense_Mutation p.D2436G 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-HT-7882-01 11 102995846 102995846 G A DYNC2H1 Missense_Mutation p.R560Q 0.32 benign(0.005) TCGA-HT-7882-01 11 47304014 47304014 C T MADD Missense_Mutation p.R518W 0.10 deleterious(0) probably_damaging(1) TCGA-HT-7882-01 11 55406511 55406511 C A OR4P4 Nonsense_Mutation p.Y226* 0.09 TCGA-HT-7882-01 11 55579059 55579059 G T OR5L1 Missense_Mutation p.L39F 0.13 deleterious(0.02) benign(0.002) TCGA-HT-7882-01 11 62414400 62414400 A G INTS5 3'UTR 0.14 TCGA-HT-7882-01 11 6292257 6292257 C T CCKBR Silent p.N276N 0.10 TCGA-HT-7882-01 12 109536053 109536053 T C UNG Intron 0.16 TCGA-HT-7882-01 12 111348834 111348834 G A MYL2 3'UTR 0.08 TCGA-HT-7882-01 12 78401085 78401105 CCAAGCTTCTCCTTCTGGTTC - NAV3 In_Frame_Del p.Q590_S596del 0.13 TCGA-HT-7882-01 14 105688184 105688184 G A BRF1 Silent p.A372A 0.15 TCGA-HT-7882-01 14 106307396 106307396 C T IGHD Missense_Mutation p.V215M 0.24 tolerated(0.22) benign(0.005) TCGA-HT-7882-01 14 107048694 107048694 G A IGHV3-53 Missense_Mutation p.T109M 0.12 tolerated_low_confidence(0.08) benign(0.387) TCGA-HT-7882-01 15 24921092 24921092 T A NPAP1 Silent p.A26A 0.19 TCGA-HT-7882-01 15 24921093 24921093 C A NPAP1 Missense_Mutation p.P27T 0.19 tolerated_low_confidence(0.2) possibly_damaging(0.803) TCGA-HT-7882-01 15 25959052 25959052 A G ATP10A Missense_Mutation p.Y705H 0.19 tolerated(0.69) benign(0.003) TCGA-HT-7882-01 16 1962006 1962006 C T HS3ST6 Missense_Mutation p.R174H 0.18 deleterious(0.02) benign(0.045) TCGA-HT-7882-01 17 18675863 18675866 TCTC - FBXW10 Frame_Shift_Del p.K718Vfs*18 0.17 TCGA-HT-7882-01 17 56343663 56343663 C T LPO Missense_Mutation p.R557C 0.11 deleterious(0) probably_damaging(1) TCGA-HT-7882-01 17 74003773 74003775 TTG - EVPL In_Frame_Del p.N1837del 0.17 TCGA-HT-7882-01 19 17845112 17845112 G C MAP1S Missense_Mutation p.A1019P 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-HT-7882-01 19 31040081 31040081 C T ZNF536 Silent p.T1185T 0.10 TCGA-HT-7882-01 19 54783825 54783825 C T LILRB2 Missense_Mutation p.R59H 0.11 tolerated(1) benign(0.025) TCGA-HT-7882-01 19 54803127 54803127 C T LILRA3 Missense_Mutation p.V184M 0.11 tolerated(0.07) possibly_damaging(0.782) TCGA-HT-7882-01 1 119936526 119936526 C T HAO2 3'UTR 0.10 TCGA-HT-7882-01 1 171079965 171079965 C G FMO3 Silent p.S218S 0.11 TCGA-HT-7882-01 1 19181133 19181133 G A TAS1R2 Silent p.P277P 0.12 TCGA-HT-7882-01 1 196716352 196716352 A T CFH Missense_Mutation p.K1202I 0.15 tolerated(0.1) benign(0.124) TCGA-HT-7882-01 1 202702739 202702739 C T KDM5B Silent p.L1233L 0.17 TCGA-HT-7882-01 1 228487678 228487678 G A OBSCN Missense_Mutation p.V4524M 0.13 probably_damaging(0.998) TCGA-HT-7882-01 1 247835492 247835492 C T OR13G1 Silent p.P284P 0.16 TCGA-HT-7882-01 1 53995560 53995560 C T GLIS1 Silent p.T287T 0.13 TCGA-HT-7882-01 1 70715634 70715634 G C SRSF11 Splice_Site p.X341_splice 0.11 TCGA-HT-7882-01 20 30584347 30584347 C T XKR7 Missense_Mutation p.T276M 0.15 tolerated(0.58) benign(0.03) TCGA-HT-7882-01 20 30667667 30667667 C T HCK Silent p.S173S 0.14 TCGA-HT-7882-01 2 116497433 116497433 G A DPP10 Silent p.A276A 0.14 TCGA-HT-7882-01 2 131976382 131976382 G A POTEE Missense_Mutation p.R136H 0.12 tolerated_low_confidence(0.15) possibly_damaging(0.522) TCGA-HT-7882-01 2 180810177 180810177 A G CWC22 Silent p.N802N 0.07 TCGA-HT-7882-01 3 101476897 101476897 C T CEP97 Missense_Mutation p.P483S 0.17 tolerated(0.2) benign(0.002) TCGA-HT-7882-01 3 178922364 178922364 G A PIK3CA Missense_Mutation p.C378Y 0.07 tolerated(0.86) benign(0.358) TCGA-HT-7882-01 3 182988131 182988131 A G B3GNT5 Missense_Mutation p.Y182C 0.19 tolerated(0.13) possibly_damaging(0.855) TCGA-HT-7882-01 4 106157894 106157894 A G TET2 Missense_Mutation p.D932G 0.23 tolerated(0.08) benign(0.002) TCGA-HT-7882-01 4 55131161 55131161 G A PDGFRA Missense_Mutation p.C235Y 0.80 deleterious(0) probably_damaging(1) TCGA-HT-7882-01 5 101582955 101582955 C A SLCO4C1 Splice_Site p.X604_splice 0.16 TCGA-HT-7882-01 5 1406358 1406358 C T SLC6A3 Missense_Mutation p.R515Q 0.07 tolerated(0.11) possibly_damaging(0.708) TCGA-HT-7882-01 5 1406386 1406386 C T SLC6A3 Missense_Mutation p.D506N 0.09 tolerated(0.46) benign(0.009) TCGA-HT-7882-01 5 54424345 54424345 G T CDC20B Missense_Mutation p.N266K 0.10 tolerated(0.99) benign(0.001) TCGA-HT-7882-01 5 89979459 89979459 T C GPR98 Silent p.S1907S 0.10 TCGA-HT-7882-01 6 130497110 130497110 C T SAMD3 Missense_Mutation p.R233Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-HT-7882-01 6 136494954 136494954 A G PDE7B Missense_Mutation p.N244S 0.20 tolerated(0.13) benign(0.045) TCGA-HT-7882-01 6 32261388 32261388 C T C6orf10 Silent p.T354T 0.14 TCGA-HT-7882-01 6 35445110 35445110 C T TEAD3 Silent p.P190P 0.12 TCGA-HT-7882-01 6 84233953 84233953 C T PRSS35 Nonsense_Mutation p.R265* 0.11 TCGA-HT-7882-01 7 102614082 102614082 G A FBXL13 Intron 0.08 TCGA-HT-7882-01 7 113517983 113517983 G A PPP1R3A Missense_Mutation p.P1055L 0.10 tolerated(0.12) benign(0.059) TCGA-HT-7882-01 7 117067417 117067417 G A ASZ1 Missense_Mutation p.T33M 0.13 tolerated(0.1) benign(0.238) TCGA-HT-7882-01 7 139810958 139810958 A C KDM7A Missense_Mutation p.I455M 0.14 deleterious(0) possibly_damaging(0.779) TCGA-HT-7882-01 7 142919425 142919425 G A TAS2R40 Missense_Mutation p.R85Q 0.09 tolerated(0.64) benign(0.007) TCGA-HT-7882-01 7 81600071 81600071 A T CACNA2D1 Intron 0.11 TCGA-HT-7882-01 8 49643961 49643961 G A EFCAB1 Nonsense_Mutation p.R54* 0.16 TCGA-HT-7882-01 9 133333962 133333962 G A ASS1 Missense_Mutation p.G117S 0.18 tolerated(0.05) possibly_damaging(0.859) TCGA-HT-7882-01 9 136227174 136227174 C T SURF2 Missense_Mutation p.T184M 0.07 benign(0.028) TCGA-HT-7882-01 X 135429578 135429578 G A GPR112 Missense_Mutation p.R1238H 0.33 tolerated(0.06) benign(0.001) TCGA-HT-7882-01 X 49958224 49958224 G A AKAP4 Silent p.S380S 0.26 TCGA-HT-7882-01 X 91133911 91133911 C A PCDH11X Missense_Mutation p.T891N 0.25 tolerated(0.15) benign(0.014) TCGA-HT-7884-01 11 116657243 116657243 T C ZNF259 Missense_Mutation p.D160G 0.29 tolerated(0.1) probably_damaging(0.955) TCGA-HT-7884-01 11 55339961 55339961 C T OR4C16 Missense_Mutation p.R120C 0.44 tolerated(0.05) benign(0.012) TCGA-HT-7884-01 11 59224594 59224594 G A OR4D6 Missense_Mutation p.R54H 0.06 tolerated(0.35) benign(0.001) TCGA-HT-7884-01 12 112327906 112327906 T G MAPKAPK5 Missense_Mutation p.C429G 0.40 tolerated(0.55) benign(0.155) TCGA-HT-7884-01 12 133277886 133277886 G A PXMP2 Silent p.P150P 0.05 TCGA-HT-7884-01 12 2910516 2910516 G A FKBP4 Silent p.E422E 0.15 TCGA-HT-7884-01 12 55356531 55356531 G A TESPA1 Missense_Mutation p.S384L 0.47 tolerated_low_confidence(0.23) benign(0.007) TCGA-HT-7884-01 12 57619561 57619561 G A NXPH4 3'UTR 0.07 TCGA-HT-7884-01 14 69908908 69908908 G A SLC39A9 Missense_Mutation p.V110I 0.13 tolerated(0.74) benign(0.02) TCGA-HT-7884-01 14 74062463 74062463 G T ACOT4 3'UTR 0.15 TCGA-HT-7884-01 15 41796600 41796600 G A LTK Silent p.H762H 0.08 TCGA-HT-7884-01 16 2816330 2816330 G A SRRM2 Missense_Mutation p.R1934H 0.45 unknown(0) TCGA-HT-7884-01 16 58030901 58030901 C T ZNF319 Silent p.A423A 0.26 TCGA-HT-7884-01 16 71317471 71317471 T C CMTR2 3'UTR 0.10 TCGA-HT-7884-01 17 1840572 1840572 C T RTN4RL1 Missense_Mutation p.G182S 0.11 deleterious(0) probably_damaging(1) TCGA-HT-7884-01 17 62856443 62856443 T C LRRC37A3 Missense_Mutation p.D1274G 0.11 deleterious(0.02) possibly_damaging(0.728) TCGA-HT-7884-01 17 72916511 72916511 G C USH1G Missense_Mutation p.F140L 0.05 tolerated(0.78) probably_damaging(0.98) TCGA-HT-7884-01 17 7577076 7577077 - C TP53 Frame_Shift_Ins p.N288Efs*18 0.29 TCGA-HT-7884-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.44 deleterious(0) probably_damaging(0.998) TCGA-HT-7884-01 18 72201914 72201914 A T CNDP1 Missense_Mutation p.K4N 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.788) TCGA-HT-7884-01 19 18260436 18260436 C T MAST3 Missense_Mutation p.P1277L 0.20 tolerated_low_confidence(0.69) benign(0.203) TCGA-HT-7884-01 1 2444388 2444388 C T PANK4 Missense_Mutation p.A556T 0.04 tolerated(0.37) benign(0.112) TCGA-HT-7884-01 1 27875777 27875777 C T AHDC1 Silent p.P950P 0.47 TCGA-HT-7884-01 1 54331952 54331952 C G YIPF1 Missense_Mutation p.R251P 0.40 deleterious(0) probably_damaging(1) TCGA-HT-7884-01 20 61511961 61511961 C T DIDO1 Missense_Mutation p.E1783K 0.07 possibly_damaging(0.708) TCGA-HT-7884-01 21 30419419 30419419 T C USP16 Silent p.N596N 0.16 TCGA-HT-7884-01 2 151328168 151328168 G A RND3 Silent p.H152H 0.04 TCGA-HT-7884-01 2 166179921 166179921 A G SCN2A Missense_Mutation p.K643E 0.12 tolerated(0.05) probably_damaging(0.998) TCGA-HT-7884-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7884-01 2 79348733 79348733 C T REG1A Missense_Mutation p.P37L 0.19 deleterious(0) possibly_damaging(0.616) TCGA-HT-7884-01 3 120628568 120628569 - CGC STXBP5L In_Frame_Ins p.E48delinsDA 0.38 TCGA-HT-7884-01 3 155215187 155215187 T - PLCH1 Frame_Shift_Del p.T594Pfs*2 0.32 TCGA-HT-7884-01 4 113436146 113436146 C T NEUROG2 Nonsense_Mutation p.W162* 0.19 TCGA-HT-7884-01 4 71510578 71510578 A C ENAM 3'UTR 0.19 TCGA-HT-7884-01 4 96761529 96761529 A G PDHA2 Silent p.A76A 0.05 TCGA-HT-7884-01 5 140563635 140563635 G A PCDHB16 Missense_Mutation p.A501T 0.05 tolerated_low_confidence(0.13) benign(0.008) TCGA-HT-7884-01 5 147484546 147484546 A G SPINK5 Missense_Mutation p.K488E 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-HT-7884-01 5 157240156 157240156 C G CLINT1 Missense_Mutation p.R144S 0.04 deleterious(0) possibly_damaging(0.856) TCGA-HT-7884-01 6 152697565 152697565 T C SYNE1 Missense_Mutation p.D3092G 0.50 probably_damaging(0.998) TCGA-HT-7884-01 6 83754360 83754360 G C UBE3D Silent p.L128L 0.37 TCGA-HT-7884-01 7 110303732 110303732 G A IMMP2L Missense_Mutation p.P152S 0.05 deleterious(0) probably_damaging(0.997) TCGA-HT-7884-01 7 20441726 20441726 A G ITGB8 Missense_Mutation p.Y555C 0.07 deleterious(0.01) probably_damaging(1) TCGA-HT-7884-01 7 32599062 32599062 G A AVL9 Missense_Mutation p.A401T 0.39 tolerated(0.06) possibly_damaging(0.854) TCGA-HT-7884-01 8 17794714 17794714 T C PCM1 Silent p.S56S 0.21 TCGA-HT-7884-01 8 79598805 79598805 G A ZC2HC1A Missense_Mutation p.G105D 0.06 deleterious(0) probably_damaging(0.998) TCGA-HT-7884-01 X 105280577 105280577 A G SERPINA7 Missense_Mutation p.V158A 0.05 tolerated(0.17) possibly_damaging(0.599) TCGA-HT-7884-01 X 12736148 12736148 T C FRMPD4 Missense_Mutation p.V1068A 0.04 deleterious_low_confidence(0.01) benign(0.044) TCGA-HT-7884-01 X 26157074 26157074 A C MAGEB18 5'UTR 0.08 TCGA-HT-7884-01 X 49142309 49142309 C T PPP1R3F Missense_Mutation p.P386L 0.37 tolerated_low_confidence(0.09) benign(0.003) TCGA-HT-7884-01 X 76939673 76939674 - T ATRX Frame_Shift_Ins p.L359Tfs*3 0.34 TCGA-HT-7902-01 11 55339753 55339753 C T OR4C16 Silent p.S50S 0.26 TCGA-HT-7902-01 11 60164158 60164158 A G MS4A14 Missense_Mutation p.D36G 0.14 tolerated(0.05) benign(0.171) TCGA-HT-7902-01 12 13103216 13103216 C T GPRC5D Missense_Mutation p.V35M 0.16 deleterious(0) probably_damaging(0.909) TCGA-HT-7902-01 14 21552188 21552188 G T ARHGEF40 Silent p.V1256V 0.12 TCGA-HT-7902-01 14 36988289 36988289 C A NKX2-1 Missense_Mutation p.G122C 0.17 deleterious(0.03) probably_damaging(0.971) TCGA-HT-7902-01 15 43545093 43545093 C T TGM5 Nonsense_Mutation p.W242* 0.17 TCGA-HT-7902-01 15 99673028 99673028 G T SYNM Missense_Mutation p.G1487V 0.06 deleterious(0) probably_damaging(0.947) TCGA-HT-7902-01 16 24372952 24372952 C A CACNG3 Missense_Mutation p.S239Y 0.08 deleterious(0) probably_damaging(0.971) TCGA-HT-7902-01 17 16456736 16456736 C A ZNF287 Missense_Mutation p.W240C 0.05 tolerated(0.17) benign(0.004) TCGA-HT-7902-01 17 21730997 21730997 A G UBBP4 Missense_Mutation p.E100G 0.12 tolerated(0.39) benign(0.022) TCGA-HT-7902-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.10 deleterious(0) probably_damaging(1) TCGA-HT-7902-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.20 deleterious(0) probably_damaging(0.995) TCGA-HT-7902-01 19 7997604 7997604 C T TIMM44 Missense_Mutation p.V299M 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-HT-7902-01 19 9073488 9073488 G T MUC16 Missense_Mutation p.T4653K 0.06 unknown(0) TCGA-HT-7902-01 1 176668593 176668593 T A PAPPA2 Missense_Mutation p.L1035H 0.05 deleterious(0) probably_damaging(0.986) TCGA-HT-7902-01 1 215960035 215960035 C T USH2A Missense_Mutation p.S3455N 0.11 benign(0.001) TCGA-HT-7902-01 1 41990504 41990504 C T HIVEP3 Missense_Mutation p.R1762H 0.16 probably_damaging(0.998) TCGA-HT-7902-01 22 50903540 50903540 G A SBF1 Missense_Mutation p.R408C 0.08 deleterious(0) probably_damaging(0.996) TCGA-HT-7902-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-7902-01 2 216904042 216904042 C T PECR Missense_Mutation p.V290I 0.20 tolerated(0.08) benign(0.113) TCGA-HT-7902-01 2 220347922 220347922 C - SPEG Frame_Shift_Del p.S1915Vfs*324 0.09 TCGA-HT-7902-01 2 233348787 233348787 T G ECEL1 Missense_Mutation p.Q444P 0.07 deleterious(0.01) probably_damaging(0.958) TCGA-HT-7902-01 2 23985167 23985167 C G ATAD2B Silent p.R1102R 0.19 TCGA-HT-7902-01 2 241513688 241513688 A G RNPEPL1 Missense_Mutation p.N135S 0.24 deleterious(0) probably_damaging(0.949) TCGA-HT-7902-01 3 52406256 52406256 G T DNAH1 Missense_Mutation p.G2227V 0.06 probably_damaging(1) TCGA-HT-7902-01 3 62248553 62248553 C G PTPRG Nonsense_Mutation p.Y880* 0.12 TCGA-HT-7902-01 4 77234312 77234312 C T CCDC158 3'UTR 0.11 TCGA-HT-7902-01 4 79512710 79512710 G T ANXA3 Missense_Mutation p.S139I 0.05 deleterious(0.02) probably_damaging(0.971) TCGA-HT-7902-01 5 41313757 41313757 G T PLCXD3 Missense_Mutation p.L310I 0.05 deleterious(0.01) probably_damaging(0.925) TCGA-HT-7902-01 7 100677107 100677107 G T MUC17 Nonsense_Mutation p.G804* 0.04 TCGA-HT-7902-01 X 123517776 123517776 G A TENM1 Silent p.S2335S 0.06 TCGA-HT-7902-01 X 128633716 128633716 G A SMARCA1 Nonsense_Mutation p.R424* 0.24 TCGA-HT-7902-01 X 76849196 76849196 A G ATRX Missense_Mutation p.L2027P 0.20 probably_damaging(0.976) TCGA-HT-8010-01 12 102120287 102120287 A G CHPT1 Intron 0.27 TCGA-HT-8010-01 12 51882579 51882579 A G SLC4A8 Missense_Mutation p.I795V 0.07 deleterious(0) probably_damaging(0.991) TCGA-HT-8010-01 12 56554332 56554332 A G MYL6 Intron 0.26 TCGA-HT-8010-01 16 30500576 30500576 G A ITGAL Missense_Mutation p.G361D 0.27 tolerated(0.24) benign(0.002) TCGA-HT-8010-01 17 29556985 29556985 C - NF1 Frame_Shift_Del p.L995Wfs*17 0.23 TCGA-HT-8010-01 17 42400903 42400903 T C SLC25A39 Missense_Mutation p.S10G 0.14 deleterious(0.01) possibly_damaging(0.9) TCGA-HT-8010-01 21 46685545 46685545 A C POFUT2 Missense_Mutation p.F381C 0.27 deleterious(0) probably_damaging(1) TCGA-HT-8010-01 22 37882152 37882152 G A MFNG Silent p.L22L 0.17 TCGA-HT-8010-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8010-01 2 55582839 55582839 G A CCDC88A Missense_Mutation p.H226Y 0.26 tolerated(0.24) benign(0.306) TCGA-HT-8010-01 6 56420389 56420389 T C DST Missense_Mutation p.S2341G 0.10 benign(0) TCGA-HT-8010-01 7 150555013 150555013 C T AOC1 Silent p.V485V 0.20 TCGA-HT-8010-01 8 56663637 56663637 G A TMEM68 Silent p.H191H 0.18 TCGA-HT-8010-01 X 138886675 138886675 G C ATP11C Silent p.T173T 0.28 TCGA-HT-8010-01 X 46884202 46884202 A G JADE3 Missense_Mutation p.T121A 0.25 tolerated(0.96) benign(0.002) TCGA-HT-8010-01 X 47101902 47101902 C T USP11 Missense_Mutation p.T533M 0.20 tolerated(0.07) probably_damaging(0.939) TCGA-HT-8010-01 X 47836606 47836606 C T ZNF182 Missense_Mutation p.E294K 0.29 tolerated(0.06) probably_damaging(0.945) TCGA-HT-8011-01 10 61835813 61835813 G A ANK3 Missense_Mutation p.T1609M 0.69 benign(0.001) TCGA-HT-8011-01 10 85970774 85970774 G A CDHR1 Silent p.V446V 0.05 TCGA-HT-8011-01 11 56380663 56380663 C T OR5M1 Missense_Mutation p.A106T 0.39 tolerated(0.46) benign(0.035) TCGA-HT-8011-01 13 19752430 19752430 C T TUBA3C Missense_Mutation p.G111S 0.36 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-HT-8011-01 14 20295845 20295845 C T OR4N2 Missense_Mutation p.R80W 0.29 deleterious(0) probably_damaging(0.941) TCGA-HT-8011-01 14 67940541 67940541 C T TMEM229B Missense_Mutation p.V34M 0.48 deleterious(0.01) probably_damaging(0.968) TCGA-HT-8011-01 14 75022287 75022287 C T LTBP2 Missense_Mutation p.A314T 0.08 tolerated(0.05) possibly_damaging(0.676) TCGA-HT-8011-01 14 76905888 76905888 C T ESRRB Silent p.G64G 0.25 TCGA-HT-8011-01 16 1962140 1962140 C T HS3ST6 Silent p.T129T 0.41 TCGA-HT-8011-01 16 3828795 3828795 G - CREBBP Frame_Shift_Del p.P616Lfs*6 0.27 TCGA-HT-8011-01 16 69689703 69689703 G A NFAT5 Splice_Site p.X399_splice 0.37 TCGA-HT-8011-01 17 38991040 38991040 T A TMEM99 Nonsense_Mutation p.L91* 0.46 TCGA-HT-8011-01 17 61557154 61557154 C T ACE Missense_Mutation p.S179L 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-HT-8011-01 18 29038477 29038477 C A DSG3 Missense_Mutation p.P96T 0.33 deleterious(0) probably_damaging(1) TCGA-HT-8011-01 18 44555313 44555313 A G TCEB3C Missense_Mutation p.S301P 0.03 tolerated(0.05) benign(0.205) TCGA-HT-8011-01 19 18888133 18888133 C A CRTC1 Missense_Mutation p.P632T 0.36 deleterious(0) probably_damaging(1) TCGA-HT-8011-01 19 23926730 23926730 T A ZNF681 Missense_Mutation p.K541I 0.50 deleterious(0) probably_damaging(0.95) TCGA-HT-8011-01 19 51274118 51274118 C T GPR32 Silent p.A87A 0.36 TCGA-HT-8011-01 19 54778558 54778558 G A LILRB2 Silent p.Y592Y 0.35 TCGA-HT-8011-01 19 54780127 54780127 C A LILRB2 Nonsense_Mutation p.E530* 0.13 TCGA-HT-8011-01 19 9578276 9578276 T A ZNF560 Silent p.G449G 0.46 TCGA-HT-8011-01 1 100361871 100361871 C T AGL Missense_Mutation p.R1097C 0.40 deleterious(0) probably_damaging(0.999) TCGA-HT-8011-01 1 157801718 157801718 G A CD5L 3'UTR 0.43 TCGA-HT-8011-01 1 19563721 19563721 C T EMC1 Silent p.Q408Q 0.35 TCGA-HT-8011-01 1 197237456 197237456 G T CRB1 5'UTR 0.43 TCGA-HT-8011-01 1 248487786 248487786 A T OR2M7 Missense_Mutation p.F29I 0.46 tolerated(0.07) benign(0.017) TCGA-HT-8011-01 1 85551533 85551533 G A WDR63 Missense_Mutation p.R187Q 0.60 tolerated(0.05) benign(0.189) TCGA-HT-8011-01 20 43344046 43344046 G A WISP2 Silent p.P5P 0.42 TCGA-HT-8011-01 20 57428501 57428501 G A GNAS Missense_Mutation p.V61I 0.42 tolerated_low_confidence(1) unknown(0) TCGA-HT-8011-01 21 9907295 9907295 G T TEKT4P2 RNA 0.15 TCGA-HT-8011-01 22 41791868 41791868 C T TEF Silent p.N272N 0.40 TCGA-HT-8011-01 2 238249144 238249144 G A COL6A3 Silent p.N2805N 0.43 TCGA-HT-8011-01 2 37594451 37594451 C G QPCT Missense_Mutation p.S208C 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-HT-8011-01 3 171330202 171330202 G A PLD1 Missense_Mutation p.R917C 0.12 deleterious(0) probably_damaging(0.999) TCGA-HT-8011-01 3 19575087 19575087 C T KCNH8 Silent p.G940G 0.42 TCGA-HT-8011-01 3 26751959 26751959 T C LRRC3B 3'UTR 0.27 TCGA-HT-8011-01 4 160189277 160189277 G A RAPGEF2 5'UTR 0.33 TCGA-HT-8011-01 4 17513644 17513644 G A QDPR Missense_Mutation p.R12W 0.49 deleterious(0) probably_damaging(0.992) TCGA-HT-8011-01 4 65180375 65180375 G T TECRL Missense_Mutation p.P181Q 0.25 tolerated(0.2) possibly_damaging(0.83) TCGA-HT-8011-01 4 71114862 71114862 A G CSN3 Missense_Mutation p.T79A 0.46 tolerated(0.09) benign(0.001) TCGA-HT-8011-01 4 75673309 75673309 G T BTC Missense_Mutation p.T160N 0.32 tolerated(0.09) benign(0.046) TCGA-HT-8011-01 4 99300314 99300314 G A RAP1GDS1 Missense_Mutation p.D171N 0.31 tolerated(0.42) possibly_damaging(0.456) TCGA-HT-8011-01 5 150948306 150948306 C T FAT2 Missense_Mutation p.A63T 0.35 benign(0.001) TCGA-HT-8011-01 5 35692734 35692734 G A SPEF2 Missense_Mutation p.D603N 0.43 tolerated(0.26) benign(0.006) TCGA-HT-8011-01 6 151914325 151914325 C T CCDC170 Silent p.D459D 0.41 TCGA-HT-8011-01 7 49842318 49842318 C T VWC2 Silent p.C236C 0.15 TCGA-HT-8011-01 7 51097053 51097053 C T COBL Silent p.A580A 0.22 TCGA-HT-8011-01 7 5372548 5372548 C T TNRC18 Missense_Mutation p.R1951H 0.21 benign(0.023) TCGA-HT-8011-01 7 63726330 63726330 C G ZNF679 Missense_Mutation p.L107V 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-HT-8011-01 8 12957837 12957837 C G DLC1 Missense_Mutation p.R670P 0.54 deleterious(0) probably_damaging(0.999) TCGA-HT-8011-01 9 19049841 19049841 G T RRAGA Missense_Mutation p.D62Y 0.71 deleterious(0) probably_damaging(0.999) TCGA-HT-8011-01 9 35560371 35560371 A T RUSC2 Missense_Mutation p.E1245V 0.40 tolerated(0.08) benign(0.25) TCGA-HT-8011-01 9 463659 463659 C A DOCK8 Missense_Mutation p.P2071T 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.493) TCGA-HT-8011-01 X 123179197 123179197 C T STAG2 Nonsense_Mutation p.R216* 0.74 TCGA-HT-8011-01 X 52825483 52825483 G A SPANXN5 3'UTR 0.82 TCGA-HT-8012-01 10 7745267 7745267 T C ITIH2 5'UTR 0.40 TCGA-HT-8012-01 10 79601943 79601943 G A DLG5 Missense_Mutation p.A378V 0.45 tolerated(0.96) benign(0.006) TCGA-HT-8012-01 12 657235 657235 G C B4GALNT3 Missense_Mutation p.Q251H 0.41 deleterious(0) probably_damaging(0.988) TCGA-HT-8012-01 12 665815 665815 C T B4GALNT3 Silent p.R721R 0.39 TCGA-HT-8012-01 12 80770981 80770981 C A OTOGL Missense_Mutation p.P2278H 0.07 deleterious(0) possibly_damaging(0.707) TCGA-HT-8012-01 13 25399896 25399896 G A RNF17 Missense_Mutation p.R744Q 0.18 deleterious(0) probably_damaging(0.968) TCGA-HT-8012-01 14 101005290 101005290 C T BEGAIN Silent p.A266A 0.27 TCGA-HT-8012-01 14 106053406 106053406 G T IGHA2 Silent p.T297T 0.08 TCGA-HT-8012-01 15 58919970 58919972 TTG - ADAM10 In_Frame_Del p.N430del 0.08 TCGA-HT-8012-01 15 99796139 99796139 G A LRRC28 5'UTR 0.76 TCGA-HT-8012-01 16 97470 97470 T C POLR3K Missense_Mutation p.K96R 0.42 tolerated(0.36) benign(0.06) TCGA-HT-8012-01 17 2595751 2595751 C T CLUH Missense_Mutation p.G1116E 0.16 deleterious(0) probably_damaging(0.925) TCGA-HT-8012-01 17 80051592 80051592 G A FASN Silent p.S112S 0.38 TCGA-HT-8012-01 19 42791207 42791208 AG - CIC Frame_Shift_Del p.G90Efs*3 0.09 TCGA-HT-8012-01 19 42793215 42793218 CAGT - CIC Frame_Shift_Del p.S370Rfs*6 0.41 TCGA-HT-8012-01 19 42796554 42796555 TG - CIC Frame_Shift_Del p.V1038Sfs*112 0.11 TCGA-HT-8012-01 1 156841489 156841489 G A NTRK1 Silent p.T264T 0.07 TCGA-HT-8012-01 1 58999969 58999969 T C OMA1 Missense_Mutation p.E255G 0.82 deleterious(0.02) possibly_damaging(0.867) TCGA-HT-8012-01 20 33583356 33583358 AGG - MYH7B In_Frame_Del p.E1016del 0.44 TCGA-HT-8012-01 20 45644820 45644820 G A EYA2 Missense_Mutation p.S100N 0.03 tolerated(0.13) possibly_damaging(0.506) TCGA-HT-8012-01 2 102959762 102959762 T A IL1RL1 Missense_Mutation p.V286D 0.25 tolerated(0.12) benign(0.078) TCGA-HT-8012-01 2 122005806 122005806 G A TFCP2L1 Silent p.S146S 0.07 TCGA-HT-8012-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8012-01 3 150645865 150645865 G A CLRN1 Missense_Mutation p.T199I 0.30 tolerated(0.07) benign(0.185) TCGA-HT-8012-01 4 166263064 166263064 A G MSMO1 Missense_Mutation p.E283G 0.45 tolerated(0.34) benign(0.002) TCGA-HT-8012-01 6 161781238 161781238 C T PARK2 Splice_Site p.X390_splice 0.04 TCGA-HT-8012-01 7 102948108 102948109 AA - PMPCB Frame_Shift_Del p.K268Rfs*15 0.22 TCGA-HT-8012-01 8 27310644 27310644 G A PTK2B Silent p.G854G 0.40 TCGA-HT-8012-01 9 139413070 139413072 AGA - NOTCH1 In_Frame_Del p.F357del 0.15 TCGA-HT-8012-01 9 78790119 78790119 A G PCSK5 Intron 0.41 TCGA-HT-8012-01 X 153881577 153881577 C T CTAG2 Silent p.A71A 0.24 TCGA-HT-8012-01 X 69500075 69500075 G T ARR3 Silent p.L312L 0.38 TCGA-HT-8012-01 X 70679529 70679529 G T TAF1 Missense_Mutation p.S1751I 0.04 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-HT-8013-01 10 134021578 134021578 T C STK32C Missense_Mutation p.D466G 0.08 tolerated_low_confidence(0.2) benign(0.37) TCGA-HT-8013-01 10 31134429 31134429 C G ZNF438 Missense_Mutation p.G650R 0.32 deleterious(0) probably_damaging(0.994) TCGA-HT-8013-01 10 42832259 42832259 G A RP11-313J2.1 RNA 0.50 TCGA-HT-8013-01 11 113856763 113856763 C T HTR3A Missense_Mutation p.R197C 0.05 deleterious(0) benign(0.427) TCGA-HT-8013-01 11 65397113 65397113 G T PCNXL3 Missense_Mutation p.V1375F 0.33 deleterious(0) possibly_damaging(0.566) TCGA-HT-8013-01 11 6977476 6977476 C T ZNF215 Missense_Mutation p.T423I 0.18 tolerated(0.12) benign(0.031) TCGA-HT-8013-01 12 62986483 62986483 A G MON2 Missense_Mutation p.D1703G 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-HT-8013-01 14 99865219 99865219 C T SETD3 Missense_Mutation p.E528K 0.42 tolerated_low_confidence(0.24) benign(0.292) TCGA-HT-8013-01 16 23703565 23703565 G A ERN2 Missense_Mutation p.R778C 0.42 deleterious(0) probably_damaging(1) TCGA-HT-8013-01 17 3100860 3100860 A G OR1A2 Silent p.G16G 0.46 TCGA-HT-8013-01 17 6526324 6526324 G C KIAA0753 Missense_Mutation p.P328A 0.06 tolerated(0.19) benign(0.4) TCGA-HT-8013-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.43 deleterious(0) probably_damaging(0.998) TCGA-HT-8013-01 17 7577545 7577545 T C TP53 Missense_Mutation p.M246V 0.35 deleterious(0) probably_damaging(0.947) TCGA-HT-8013-01 18 29340011 29340011 G A SLC25A52 Missense_Mutation p.T215M 0.12 tolerated(0.12) benign(0.04) TCGA-HT-8013-01 1 237730050 237730050 G A RYR2 Missense_Mutation p.R1133H 0.41 benign(0.002) TCGA-HT-8013-01 1 62728946 62728946 C T KANK4 Missense_Mutation p.R786H 0.55 deleterious(0.02) benign(0.046) TCGA-HT-8013-01 20 44037441 44037441 C A DBNDD2 Missense_Mutation p.P149H 0.42 deleterious(0) probably_damaging(0.995) TCGA-HT-8013-01 2 107041183 107041183 C T RGPD3 Silent p.R1080R 0.39 TCGA-HT-8013-01 2 179443923 179443923 C T TTN Missense_Mutation p.D22612N 0.44 TCGA-HT-8013-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8013-01 3 121158888 121158888 C T POLQ Missense_Mutation p.R2447H 0.37 deleterious(0.02) benign(0.262) TCGA-HT-8013-01 3 138192428 138192428 G A ESYT3 Missense_Mutation p.R763H 0.40 deleterious(0) probably_damaging(0.996) TCGA-HT-8013-01 3 28566121 28566121 G A ZCWPW2 Missense_Mutation p.C338Y 0.12 deleterious(0.03) benign(0.388) TCGA-HT-8013-01 7 128315777 128315777 G A FAM71F2 Missense_Mutation p.V77M 0.06 tolerated(0.54) benign(0.04) TCGA-HT-8013-01 7 146829342 146829342 T - CNTNAP2 Frame_Shift_Del p.L364* 0.40 TCGA-HT-8013-01 8 42401645 42401645 C T SMIM19 Silent p.D10D 0.27 TCGA-HT-8013-01 8 72754838 72754838 G A MSC 3'UTR 0.09 TCGA-HT-8013-01 8 94745679 94745679 T C RBM12B Missense_Mutation p.N987S 0.42 tolerated(0.08) probably_damaging(0.982) TCGA-HT-8013-01 X 149638129 149638129 T A MAMLD1 Missense_Mutation p.M70K 0.11 deleterious(0) benign(0.244) TCGA-HT-8013-01 X 155234153 155234153 A G IL9R Missense_Mutation p.I168V 0.11 tolerated(1) benign(0.013) TCGA-HT-8013-01 X 54784549 54784549 A G ITIH6 Missense_Mutation p.V653A 0.08 tolerated(0.08) benign(0.003) TCGA-HT-8013-01 X 76939235 76939235 C A ATRX Nonsense_Mutation p.E505* 0.40 TCGA-HT-8013-01 X 77380495 77380495 C T PGK1 Missense_Mutation p.A354V 0.15 deleterious(0.03) benign(0.052) TCGA-HT-8015-01 16 21073899 21073899 C A DNAH3 Missense_Mutation p.K1208N 0.04 deleterious(0.05) benign(0.082) TCGA-HT-8015-01 17 73144759 73144759 G A HN1 Missense_Mutation p.R22W 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HT-8015-01 1 232941067 232941067 G A MAP10 Missense_Mutation p.A100T 0.05 tolerated_low_confidence(0.06) possibly_damaging(0.695) TCGA-HT-8018-01 17 7318355 7318355 C T NLGN2 Missense_Mutation p.R309W 0.05 deleterious(0) probably_damaging(0.978) TCGA-HT-8018-01 17 7577117 7577117 A C TP53 Missense_Mutation p.V274G 0.24 deleterious(0) probably_damaging(0.997) TCGA-HT-8018-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.14 TCGA-HT-8018-01 19 36333388 36333388 C T NPHS1 Missense_Mutation p.R800H 0.14 tolerated(0.55) benign(0.021) TCGA-HT-8018-01 19 40902431 40902431 C T PRX Missense_Mutation p.E610K 0.03 tolerated(0.07) benign(0.005) TCGA-HT-8018-01 19 41094661 41094661 G A SHKBP1 Missense_Mutation p.G490S 0.12 tolerated(0.8) benign(0.065) TCGA-HT-8018-01 1 151338256 151338256 G C SELENBP1 Missense_Mutation p.P304A 0.04 deleterious(0) possibly_damaging(0.85) TCGA-HT-8018-01 1 196274364 196274364 C T KCNT2 Silent p.K865K 0.07 TCGA-HT-8018-01 20 2840757 2840759 ATA - VPS16 In_Frame_Del p.D67_I68delinsV 0.18 TCGA-HT-8018-01 20 62839768 62839768 C T MYT1 Nonsense_Mutation p.Q407* 0.28 TCGA-HT-8018-01 22 24622165 24622165 C A GGT5 Missense_Mutation p.D370Y 0.17 deleterious(0) probably_damaging(0.988) TCGA-HT-8018-01 22 32833775 32833775 G C BPIFC Missense_Mutation p.T240S 0.21 tolerated(0.7) benign(0.26) TCGA-HT-8018-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8018-01 3 29323193 29323193 G A RBMS3 Silent p.Q7Q 0.11 TCGA-HT-8018-01 3 49070172 49070172 T C QRICH1 Missense_Mutation p.K644E 0.19 deleterious(0.01) benign(0.422) TCGA-HT-8018-01 4 3319342 3319342 G A RGS12 Missense_Mutation p.G482E 0.17 tolerated(0.07) possibly_damaging(0.851) TCGA-HT-8018-01 6 35960439 35960439 C T SLC26A8 Missense_Mutation p.V214I 0.05 tolerated(0.28) benign(0.108) TCGA-HT-8018-01 6 44118317 44118317 C T TMEM63B Missense_Mutation p.R542C 0.19 deleterious(0) probably_damaging(0.998) TCGA-HT-8018-01 7 112112278 112112278 G A IFRD1 Missense_Mutation p.R349Q 0.20 tolerated(0.09) benign(0.007) TCGA-HT-8018-01 8 143960802 143960802 G T CYP11B1 Intron 0.19 TCGA-HT-8018-01 X 140992759 140992759 C T MAGEC1 5'UTR 0.23 TCGA-HT-8018-01 X 153069212 153069212 C T PDZD4 Missense_Mutation p.V636M 0.05 deleterious(0) probably_damaging(0.994) TCGA-HT-8018-01 X 17743968 17743968 G T NHS Missense_Mutation p.R560M 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-HT-8018-01 X 65253439 65253439 A G VSIG4 Missense_Mutation p.S97P 0.04 deleterious(0) probably_damaging(0.998) TCGA-HT-8018-01 X 76931745 76931745 T C ATRX Missense_Mutation p.D1262G 0.06 benign(0.16) TCGA-HT-8018-01 X 91134295 91134295 C A PCDH11X Intron 0.04 TCGA-HT-8104-01 10 89624301 89624301 G T PTEN Missense_Mutation p.L25F 0.56 deleterious(0) probably_damaging(0.952) TCGA-HT-8104-01 11 1026378 1026378 G A MUC6 Missense_Mutation p.S832L 0.41 unknown(0) TCGA-HT-8104-01 12 108589925 108589925 G A WSCD2 Missense_Mutation p.D106N 0.37 tolerated(0.09) benign(0.015) TCGA-HT-8104-01 12 111729243 111729243 C T CUX2 Missense_Mutation p.A108V 0.33 tolerated(0.39) benign(0.002) TCGA-HT-8104-01 12 1995491 1995491 G A CACNA2D4 Silent p.D297D 0.40 TCGA-HT-8104-01 12 72893328 72893328 C T TRHDE Silent p.D500D 0.40 TCGA-HT-8104-01 14 106320535 106320535 G A IGHM Silent p.T425T 0.39 TCGA-HT-8104-01 14 24793338 24793338 C T ADCY4 Missense_Mutation p.R659Q 0.29 tolerated(0.41) benign(0.001) TCGA-HT-8104-01 15 101170214 101170214 C T ASB7 Nonsense_Mutation p.R262* 0.39 TCGA-HT-8104-01 15 74315324 74315324 C A PML Missense_Mutation p.A253D 0.37 tolerated(0.14) possibly_damaging(0.878) TCGA-HT-8104-01 15 75042332 75042332 G A CYP1A2 Missense_Mutation p.V85M 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-HT-8104-01 16 1568282 1568282 T C IFT140 Missense_Mutation p.I1373V 0.33 tolerated(1) benign(0.002) TCGA-HT-8104-01 16 21049263 21049263 C T DNAH3 Silent p.S1590S 0.33 TCGA-HT-8104-01 16 56396893 56396893 G A AMFR Silent p.D620D 0.65 TCGA-HT-8104-01 17 10223518 10223518 G A MYH13 Silent p.D1100D 0.33 TCGA-HT-8104-01 17 10248554 10248554 T - MYH13 Frame_Shift_Del p.M517Wfs*87 0.08 TCGA-HT-8104-01 18 19751314 19751314 C A GATA6 Missense_Mutation p.A70E 0.24 deleterious_low_confidence(0) benign(0.012) TCGA-HT-8104-01 19 12920991 12920991 C T RNASEH2A Missense_Mutation p.P173L 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-HT-8104-01 19 2043519 2043519 G A MKNK2 Silent p.Y134Y 0.24 TCGA-HT-8104-01 19 22817127 22817127 T G ZNF492 5'UTR 0.52 TCGA-HT-8104-01 19 29215151 29215151 G A AC005307.3 RNA 0.19 TCGA-HT-8104-01 19 34263992 34263992 C T CHST8 3'UTR 0.22 TCGA-HT-8104-01 19 41703792 41703792 C T CYP2S1 Missense_Mutation p.A151V 0.17 deleterious(0.01) possibly_damaging(0.548) TCGA-HT-8104-01 19 53668011 53668011 C G ZNF665 Missense_Mutation p.A578P 0.13 deleterious(0) probably_damaging(0.974) TCGA-HT-8104-01 19 56321356 56321356 C G NLRP11 Missense_Mutation p.W207S 0.39 deleterious(0) probably_damaging(0.999) TCGA-HT-8104-01 1 156268445 156268445 T C VHLL 3'UTR 0.21 TCGA-HT-8104-01 1 160099056 160099056 C T ATP1A2 Missense_Mutation p.R443W 0.34 deleterious(0) probably_damaging(0.998) TCGA-HT-8104-01 1 160771742 160771742 G A LY9 Intron 0.35 TCGA-HT-8104-01 1 172628551 172628551 C A FASLG Silent p.P70P 0.33 TCGA-HT-8104-01 1 248685544 248685544 C T OR2G6 Silent p.L199L 0.29 TCGA-HT-8104-01 1 26691676 26691676 T C ZNF683 Missense_Mutation p.K121E 0.25 tolerated(1) benign(0.001) TCGA-HT-8104-01 1 57378109 57378109 A T C8A Missense_Mutation p.S472C 0.33 deleterious(0) possibly_damaging(0.84) TCGA-HT-8104-01 1 84961976 84961976 C T RPF1 Missense_Mutation p.R311C 0.45 deleterious(0) probably_damaging(0.999) TCGA-HT-8104-01 21 43161012 43161012 G A RIPK4 Nonsense_Mutation p.R781* 0.30 TCGA-HT-8104-01 2 138378230 138378230 G A THSD7B Missense_Mutation p.V1248M 0.36 deleterious(0.02) unknown(0) TCGA-HT-8104-01 2 149528637 149528637 A G EPC2 Silent p.T467T 0.41 TCGA-HT-8104-01 2 170038807 170038807 G A LRP2 Missense_Mutation p.R3290C 0.21 benign(0.139) TCGA-HT-8104-01 2 198267364 198267364 T A SF3B1 Missense_Mutation p.I665F 0.15 deleterious(0) probably_damaging(0.924) TCGA-HT-8104-01 2 210558554 210558554 A G MAP2 Missense_Mutation p.T554A 0.04 tolerated_low_confidence(0.51) benign(0.004) TCGA-HT-8104-01 2 224629906 224629906 C T AP1S3 Intron 0.35 TCGA-HT-8104-01 2 237308067 237308067 T C IQCA1 Missense_Mutation p.N400S 0.04 tolerated(1) benign(0.002) TCGA-HT-8104-01 2 238274357 238274357 G A COL6A3 Missense_Mutation p.S1941L 0.39 benign(0.023) TCGA-HT-8104-01 2 32858959 32858959 C G TTC27 Missense_Mutation p.L95V 0.17 tolerated(0.51) benign(0.067) TCGA-HT-8104-01 2 71615784 71615784 C T ZNF638 Intron 0.33 TCGA-HT-8104-01 3 141497220 141497220 C T GRK7 Missense_Mutation p.R32W 0.26 deleterious(0) possibly_damaging(0.852) TCGA-HT-8104-01 4 13605416 13605416 G A BOD1L1 Silent p.D1036D 0.37 TCGA-HT-8104-01 4 183959372 183959372 G A FAM92A1P2 RNA 0.20 TCGA-HT-8104-01 4 46995377 46995377 C T GABRA4 Missense_Mutation p.R22H 0.38 tolerated(0.55) benign(0) TCGA-HT-8104-01 4 54327127 54327127 G A LNX1 Missense_Mutation p.L712F 0.38 tolerated(0.16) probably_damaging(0.978) TCGA-HT-8104-01 4 55961110 55961110 G A KDR Nonsense_Mutation p.R944* 0.35 TCGA-HT-8104-01 4 6865324 6865324 C T KIAA0232 Missense_Mutation p.P1072L 0.27 deleterious(0) probably_damaging(1) TCGA-HT-8104-01 5 150924339 150924339 G A FAT2 Nonsense_Mutation p.R2117* 0.31 TCGA-HT-8104-01 5 156590151 156590151 C T FAM71B Silent p.A375A 0.28 TCGA-HT-8104-01 5 158158158 158158158 G A EBF1 Silent p.N348N 0.23 TCGA-HT-8104-01 5 170738554 170738554 C A TLX3 Missense_Mutation p.P276H 0.43 deleterious(0) probably_damaging(0.996) TCGA-HT-8104-01 5 22078833 22078833 C T CDH12 5'UTR 0.31 TCGA-HT-8104-01 5 33683148 33683148 C T ADAMTS12 Missense_Mutation p.R297Q 0.28 deleterious(0) probably_damaging(1) TCGA-HT-8104-01 5 35646854 35646854 G A SPEF2 Missense_Mutation p.R224H 0.33 tolerated(0.17) benign(0.01) TCGA-HT-8104-01 5 54329739 54329739 G A GZMK Silent p.P260P 0.24 TCGA-HT-8104-01 5 89954001 89954001 G C GPR98 Missense_Mutation p.R1553P 0.31 benign(0.41) TCGA-HT-8104-01 6 142397176 142397176 C T NMBR Missense_Mutation p.R261Q 0.32 deleterious(0.02) benign(0.43) TCGA-HT-8104-01 7 36492182 36492182 T C ANLN Silent p.A1116A 0.22 TCGA-HT-8104-01 7 55241722 55241722 G A EGFR Missense_Mutation p.G724S 0.06 deleterious(0.03) probably_damaging(0.995) TCGA-HT-8104-01 7 96251918 96251918 A G RP11-682N22.1 RNA 0.22 TCGA-HT-8104-01 8 145057683 145057683 G A PARP10 Missense_Mutation p.P692S 0.21 tolerated(0.97) benign(0.029) TCGA-HT-8104-01 8 145583729 145583729 G A SLC52A2 Missense_Mutation p.A193T 0.05 tolerated(0.25) possibly_damaging(0.866) TCGA-HT-8104-01 8 55534023 55534023 C T RP1 Missense_Mutation p.T166M 0.32 tolerated(0.19) benign(0.097) TCGA-HT-8104-01 8 86180769 86180769 A G CA13 Silent p.T194T 0.05 TCGA-HT-8104-01 9 125674357 125674357 C T ZBTB6 5'UTR 0.38 TCGA-HT-8104-01 9 70993121 70993121 C T PGM5 Nonsense_Mutation p.R90* 0.24 TCGA-HT-8104-01 X 101139070 101139070 C A ZMAT1 Missense_Mutation p.K443N 0.35 tolerated(0.12) benign(0.003) TCGA-HT-8104-01 X 118724016 118724016 T C NKRF Missense_Mutation p.T473A 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-HT-8104-01 X 129147463 129147463 G A BCORL1 Missense_Mutation p.V239I 0.35 unknown(0) TCGA-HT-8104-01 X 129498601 129498601 G A SLC25A14 Splice_Site p.X199_splice 0.29 TCGA-HT-8104-01 X 130413285 130413285 C T IGSF1 Silent p.G559G 0.31 TCGA-HT-8104-01 X 130415782 130415782 T G IGSF1 Missense_Mutation p.Q461H 0.43 tolerated(0.28) benign(0.008) TCGA-HT-8104-01 X 1720261 1720261 G A AKAP17A Missense_Mutation p.R621Q 0.19 tolerated_low_confidence(0.29) unknown(0) TCGA-HT-8104-01 X 55033742 55033742 G T APEX2 Silent p.V477V 0.35 TCGA-HT-8104-01 X 70464671 70464671 G C ZMYM3 Missense_Mutation p.T1027S 0.22 tolerated(0.6) benign(0.084) TCGA-HT-8104-01 X 71493768 71493768 G T RPS4X Missense_Mutation p.L139M 0.32 deleterious(0.02) possibly_damaging(0.836) TCGA-HT-8104-01 X 83129576 83129576 G T CYLC1 Missense_Mutation p.K620N 0.39 deleterious(0) probably_damaging(0.949) TCGA-HT-8104-01 X 88009269 88009269 T A CPXCR1 Missense_Mutation p.F285Y 0.40 deleterious(0.02) possibly_damaging(0.682) TCGA-HT-8105-01 10 76784946 76784949 ACAA - KAT6B Frame_Shift_Del p.T1203Rfs*21 0.31 TCGA-HT-8105-01 11 56020647 56020647 C A OR5T3 Missense_Mutation p.N324K 0.38 deleterious(0) unknown(0) TCGA-HT-8105-01 11 73362876 73362877 TG - PLEKHB1 Frame_Shift_Del p.V98Efs*17 0.31 TCGA-HT-8105-01 11 77386296 77386296 T C RSF1 Missense_Mutation p.Q1116R 0.47 deleterious(0.01) probably_damaging(0.941) TCGA-HT-8105-01 11 94554698 94554698 G A AMOTL1 Missense_Mutation p.R375H 0.06 tolerated(0.06) possibly_damaging(0.891) TCGA-HT-8105-01 12 104698787 104698787 C T EID3 3'UTR 0.36 TCGA-HT-8105-01 12 132626153 132626153 T C DDX51 Splice_Site p.X332_splice 0.36 TCGA-HT-8105-01 12 22069947 22069947 C T ABCC9 Missense_Mutation p.R166H 0.16 deleterious(0.01) probably_damaging(0.928) TCGA-HT-8105-01 12 57487287 57487287 A G NAB2 Silent p.T458T 0.43 TCGA-HT-8105-01 12 75692508 75692508 G A CAPS2 Nonsense_Mutation p.R354* 0.29 TCGA-HT-8105-01 13 101294549 101294549 C T TMTC4 Silent p.A219A 0.30 TCGA-HT-8105-01 13 88329500 88329500 A G SLITRK5 Silent p.V619V 0.08 TCGA-HT-8105-01 14 101515048 101515048 G C MIR544A RNA 0.32 TCGA-HT-8105-01 15 57484478 57484479 CT - TCF12 Frame_Shift_Del p.S172Cfs*4 0.30 TCGA-HT-8105-01 15 74623086 74623086 G A CCDC33 Silent p.L513L 0.40 TCGA-HT-8105-01 16 15820745 15820745 C T MYH11 Missense_Mutation p.R1280Q 0.45 possibly_damaging(0.623) TCGA-HT-8105-01 16 57918281 57918281 G A CNGB1 Silent p.T1181T 0.11 TCGA-HT-8105-01 16 84270707 84270707 C T KCNG4 Missense_Mutation p.A129T 0.32 tolerated(0.43) probably_damaging(0.999) TCGA-HT-8105-01 16 84270753 84270755 GAA - KCNG4 In_Frame_Del p.F113del 0.32 TCGA-HT-8105-01 17 17394832 17394833 AG - MED9 3'UTR 0.34 TCGA-HT-8105-01 17 17717630 17717630 T C SREBF1 Missense_Mutation p.I974V 0.55 tolerated(0.45) benign(0.001) TCGA-HT-8105-01 17 17717650 17717650 G C SREBF1 Missense_Mutation p.S967C 0.55 deleterious(0.05) probably_damaging(0.951) TCGA-HT-8105-01 17 37006642 37006642 T C RPL23 Missense_Mutation p.I105V 0.39 tolerated(0.05) benign(0.097) TCGA-HT-8105-01 17 40695939 40695939 G T NAGLU Nonsense_Mutation p.E639* 0.29 TCGA-HT-8105-01 17 42949920 42949920 C A EFTUD2 Missense_Mutation p.E296D 0.39 tolerated(0.41) benign(0.006) TCGA-HT-8105-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.35 deleterious(0) probably_damaging(0.998) TCGA-HT-8105-01 18 22807299 22807299 T C ZNF521 Missense_Mutation p.T195A 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-HT-8105-01 18 57006123 57006123 G A LMAN1 Missense_Mutation p.R340C 0.04 deleterious(0.01) probably_damaging(0.973) TCGA-HT-8105-01 19 10157411 10157413 GAA - C3P1 RNA 0.33 TCGA-HT-8105-01 19 42794910 42794911 CT - CIC Frame_Shift_Del p.L664Vfs*25 0.62 TCGA-HT-8105-01 1 12726312 12726312 C T AADACL4 Missense_Mutation p.R264C 0.15 deleterious(0.05) possibly_damaging(0.892) TCGA-HT-8105-01 1 161199442 161199442 G A TOMM40L 3'UTR 0.06 TCGA-HT-8105-01 1 169845143 169845146 ACAA - SCYL3 Frame_Shift_Del p.C147Kfs*10 0.25 TCGA-HT-8105-01 1 205030440 205030440 C G CNTN2 Missense_Mutation p.P289A 0.06 tolerated(0.88) probably_damaging(0.977) TCGA-HT-8105-01 1 231374902 231374904 TCT - C1orf131 In_Frame_Del p.K50del 0.15 TCGA-HT-8105-01 1 63063515 63063517 AAG - ANGPTL3 In_Frame_Del p.E96del 0.65 TCGA-HT-8105-01 1 78428470 78428471 TA - FUBP1 Frame_Shift_Del p.I443Rfs*47 0.54 TCGA-HT-8105-01 20 1517874 1517874 C T SIRPD Silent p.S168S 0.35 TCGA-HT-8105-01 2 202619251 202619251 G A ALS2 Silent p.L539L 0.08 TCGA-HT-8105-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8105-01 2 226446836 226446836 G A NYAP2 Missense_Mutation p.A235T 0.49 tolerated(0.09) benign(0.027) TCGA-HT-8105-01 2 232079592 232079592 G T ARMC9 Missense_Mutation p.D76Y 0.28 deleterious(0.01) benign(0.052) TCGA-HT-8105-01 3 155200026 155200026 C T PLCH1 Silent p.T1271T 0.45 TCGA-HT-8105-01 3 195474005 195474005 G A MUC4 3'UTR 0.24 TCGA-HT-8105-01 3 37402755 37402755 A G GOLGA4 Intron 0.13 TCGA-HT-8105-01 3 48699364 48699365 - G CELSR3 Frame_Shift_Ins p.L235Pfs*69 0.31 TCGA-HT-8105-01 3 73433161 73433161 G C PDZRN3 Missense_Mutation p.S852R 0.03 tolerated(0.53) benign(0.001) TCGA-HT-8105-01 3 7503380 7503380 G A GRM7 Missense_Mutation p.G496R 0.38 deleterious(0) probably_damaging(0.999) TCGA-HT-8105-01 3 97868537 97868537 C T OR5H14 Missense_Mutation p.S103L 0.66 tolerated(0.12) benign(0.014) TCGA-HT-8105-01 5 1409222 1409222 T G SLC6A3 Missense_Mutation p.T473P 0.44 tolerated(0.09) benign(0.208) TCGA-HT-8105-01 6 100898211 100898211 C T SIM1 Missense_Mutation p.V94M 0.34 deleterious(0) probably_damaging(1) TCGA-HT-8105-01 6 129762070 129762072 GAA - LAMA2 In_Frame_Del p.K2067del 0.40 TCGA-HT-8105-01 6 26056630 26056630 G C HIST1H1C Silent p.P9P 0.37 TCGA-HT-8105-01 7 150840954 150840954 C T AGAP3 Missense_Mutation p.A887V 0.45 tolerated(0.39) benign(0.014) TCGA-HT-8105-01 7 7278106 7278109 AATT - C1GALT1 Frame_Shift_Del p.I148Kfs*11 0.31 TCGA-HT-8105-01 9 123374758 123374760 CTT - MEGF9 In_Frame_Del p.E334del 0.33 TCGA-HT-8105-01 9 131512920 131512920 C T ZER1 Missense_Mutation p.G445D 0.54 deleterious(0) possibly_damaging(0.776) TCGA-HT-8105-01 9 135211887 135211887 T C SETX Missense_Mutation p.I172V 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-HT-8105-01 9 139412725 139412727 GTT - NOTCH1 In_Frame_Del p.N373del 0.39 TCGA-HT-8105-01 9 35736657 35736660 AAGG - CREB3 Frame_Shift_Del p.K352Efs*66 0.28 TCGA-HT-8105-01 9 79324138 79324139 - TGACTGTTGCAG PRUNE2 In_Frame_Ins p.Q1017_S1018insLQQS 0.11 TCGA-HT-8105-01 X 1317467 1317467 G T CRLF2 Missense_Mutation p.P200T 0.39 deleterious(0) probably_damaging(1) TCGA-HT-8106-01 10 131671806 131671806 T G EBF3 Missense_Mutation p.N231H 0.08 deleterious(0) possibly_damaging(0.805) TCGA-HT-8106-01 10 133967332 133967332 G T JAKMIP3 Splice_Site p.X712_splice 0.06 TCGA-HT-8106-01 11 2190969 2190969 C T TH Missense_Mutation p.E106K 0.10 tolerated(0.15) benign(0.06) TCGA-HT-8106-01 11 5012621 5012621 T A MMP26 Missense_Mutation p.F164I 0.22 deleterious(0) probably_damaging(0.999) TCGA-HT-8106-01 11 61724345 61724345 T C BEST1 Silent p.L111L 0.10 TCGA-HT-8106-01 12 104099417 104099417 A G STAB2 Missense_Mutation p.E1303G 0.18 tolerated(0.12) possibly_damaging(0.549) TCGA-HT-8106-01 12 51751986 51751986 G T GALNT6 Missense_Mutation p.N476K 0.17 deleterious(0.01) benign(0.309) TCGA-HT-8106-01 13 61987072 61987072 C T PCDH20 Missense_Mutation p.G387E 0.07 deleterious(0.01) benign(0.004) TCGA-HT-8106-01 13 77862494 77862494 A T MYCBP2 Missense_Mutation p.N94K 0.13 benign(0) TCGA-HT-8106-01 15 23441125 23441125 T A AC100757.1 5'Flank 0.02 TCGA-HT-8106-01 15 86838484 86838484 A C AGBL1 Splice_Site p.X695_splice 0.12 TCGA-HT-8106-01 16 68406071 68406071 G A SMPD3 Missense_Mutation p.T5M 0.09 deleterious(0.01) probably_damaging(0.96) TCGA-HT-8106-01 17 12655919 12655919 T A MYOCD Silent p.S438S 0.07 TCGA-HT-8106-01 17 29221996 29221996 T C ATAD5 3'UTR 0.31 TCGA-HT-8106-01 17 35974371 35974371 C G DDX52 Missense_Mutation p.K590N 0.15 deleterious(0.04) benign(0.031) TCGA-HT-8106-01 17 39871798 39871798 G A GAST Missense_Mutation p.G37E 0.05 tolerated_low_confidence(0.39) benign(0.219) TCGA-HT-8106-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.30 TCGA-HT-8106-01 18 31323665 31323665 A G ASXL3 Missense_Mutation p.I1285V 0.19 benign(0.004) TCGA-HT-8106-01 19 3544651 3544651 G A MFSD12 Intron 0.07 TCGA-HT-8106-01 19 45322041 45322041 C T BCAM Missense_Mutation p.S413F 0.13 deleterious(0.03) benign(0.086) TCGA-HT-8106-01 19 9069935 9069935 G T MUC16 Silent p.P5837P 0.08 TCGA-HT-8106-01 19 9586034 9586034 T C ZNF560 5'UTR 0.25 TCGA-HT-8106-01 1 39330370 39330370 G A MYCBP Missense_Mutation p.P95L 0.18 tolerated(0.07) benign(0.015) TCGA-HT-8106-01 22 45779410 45779410 G A SMC1B Silent p.C665C 0.15 TCGA-HT-8106-01 2 166897764 166897764 T A SCN1A Missense_Mutation p.N798Y 0.23 tolerated(0.25) benign(0.058) TCGA-HT-8106-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8106-01 3 36875229 36875229 A G TRANK1 Silent p.L1905L 0.07 TCGA-HT-8106-01 3 52836815 52836815 G A ITIH3 Missense_Mutation p.E568K 0.11 deleterious(0.01) benign(0.035) TCGA-HT-8106-01 4 126239282 126239282 C G FAT4 Silent p.L572L 0.09 TCGA-HT-8106-01 4 13543758 13543758 G C NKX3-2 Silent p.R287R 0.25 TCGA-HT-8106-01 4 151153981 151153981 G A DCLK2 Splice_Site p.X539_splice 0.07 TCGA-HT-8106-01 4 183959255 183959255 C A FAM92A1P2 RNA 0.13 TCGA-HT-8106-01 4 26432517 26432517 A G RBPJ Missense_Mutation p.N464S 0.08 tolerated_low_confidence(0.86) benign(0.001) TCGA-HT-8106-01 5 157178479 157178479 A G LSM11 Missense_Mutation p.K177R 0.07 tolerated(0.06) probably_damaging(0.989) TCGA-HT-8106-01 5 76259212 76259212 G A CRHBP Silent p.L246L 0.08 TCGA-HT-8106-01 6 49814258 49814258 T C CRISP1 Missense_Mutation p.D137G 0.07 tolerated(0.39) benign(0.003) TCGA-HT-8106-01 6 54254705 54254705 G A TINAG Silent p.T471T 0.07 TCGA-HT-8106-01 6 88125415 88125415 G A C6ORF165 Missense_Mutation p.E99K 0.06 tolerated(0.42) benign(0.012) TCGA-HT-8106-01 7 100679992 100679992 G T MUC17 Missense_Mutation p.E1765D 0.17 possibly_damaging(0.874) TCGA-HT-8106-01 8 71044226 71044226 C T NCOA2 Missense_Mutation p.G1057D 0.10 tolerated(0.24) benign(0.272) TCGA-HT-8106-01 9 128094894 128094894 A G GAPVD1 Missense_Mutation p.D805G 0.20 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-HT-8106-01 9 139996094 139996094 C T MAN1B1 Silent p.L408L 0.21 TCGA-HT-8106-01 9 94486641 94486641 G A ROR2 Missense_Mutation p.P712L 0.06 deleterious(0.03) benign(0.227) TCGA-HT-8107-01 11 94731685 94731685 G A KDM4D Silent p.R383R 0.06 TCGA-HT-8107-01 7 55211080 55211080 G A EGFR Missense_Mutation p.R108K 0.15 deleterious(0) probably_damaging(0.998) TCGA-HT-8108-01 11 112014361 112014361 C A IL18 Missense_Mutation p.L180F 0.31 tolerated(0.7) benign(0.004) TCGA-HT-8108-01 11 115109342 115109342 T C CADM1 Missense_Mutation p.N101S 0.50 deleterious(0.04) benign(0.18) TCGA-HT-8108-01 11 59830060 59830060 G A MS4A3 Silent p.P92P 0.45 TCGA-HT-8108-01 12 122684844 122684844 G A LRRC43 Silent p.L486L 0.05 TCGA-HT-8108-01 12 91445220 91445220 T C KERA Missense_Mutation p.H321R 0.28 tolerated(1) benign(0) TCGA-HT-8108-01 16 89755723 89755723 G A CDK10 Missense_Mutation p.G51S 0.39 deleterious(0) probably_damaging(0.989) TCGA-HT-8108-01 17 2279933 2279933 T C SGSM2 Intron 0.34 TCGA-HT-8108-01 17 7578471 7578471 G - TP53 Frame_Shift_Del p.G154Afs*16 0.44 TCGA-HT-8108-01 18 11880999 11880999 G A GNAL Silent p.T414T 0.36 TCGA-HT-8108-01 19 30106434 30106434 A G POP4 3'UTR 0.40 TCGA-HT-8108-01 2 102641101 102641101 G A IL1R2 Silent p.P286P 0.05 TCGA-HT-8108-01 2 113788702 113788702 C T IL36B Missense_Mutation p.R15H 0.28 tolerated_low_confidence(0.47) benign(0.021) TCGA-HT-8108-01 2 179593263 179593263 C T TTN Missense_Mutation p.G6464R 0.26 TCGA-HT-8108-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8108-01 2 55746848 55746849 - A CCDC104 5'UTR 0.34 TCGA-HT-8108-01 3 186501406 186501406 G T EIF4A2 Missense_Mutation p.G3C 0.38 tolerated_low_confidence(0.16) benign(0.089) TCGA-HT-8108-01 4 122756377 122756377 G T BBS7 Missense_Mutation p.P478H 0.28 deleterious(0) probably_damaging(0.998) TCGA-HT-8108-01 5 10461352 10461352 C T ROPN1L Silent p.G158G 0.38 TCGA-HT-8108-01 6 100911318 100911318 C T SIM1 Silent p.A9A 0.15 TCGA-HT-8108-01 6 152485384 152485384 C T SYNE1 Missense_Mutation p.A7902T 0.68 benign(0.009) TCGA-HT-8108-01 7 27872345 27872345 C T JAZF1 3'UTR 0.23 TCGA-HT-8108-01 9 130453162 130453162 C T STXBP1 3'UTR 0.09 TCGA-HT-8108-01 X 107979043 107979043 C G IRS4 Missense_Mutation p.A178P 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-HT-8108-01 X 123518058 123518058 C T TENM1 Silent p.L2241L 0.43 TCGA-HT-8108-01 X 153208518 153208518 T G RENBP Missense_Mutation p.E159A 0.51 tolerated(0.18) benign(0.013) TCGA-HT-8108-01 X 67414334 67414334 G C OPHN1 Missense_Mutation p.H371D 0.43 tolerated(0.05) possibly_damaging(0.889) TCGA-HT-8108-01 X 71350844 71350844 C T RGAG4 Missense_Mutation p.G183R 0.05 tolerated(0.14) possibly_damaging(0.74) TCGA-HT-8108-01 X 76813062 76813063 - AG ATRX Frame_Shift_Ins p.F2187Lfs*16 0.31 TCGA-HT-8109-01 10 100013489 100013489 C T LOXL4 Silent p.P552P 0.33 TCGA-HT-8109-01 10 50953529 50953529 C T OGDHL Missense_Mutation p.R497Q 0.26 deleterious(0) probably_damaging(0.975) TCGA-HT-8109-01 10 76360239 76360239 A G ADK Missense_Mutation p.I289V 0.20 tolerated(0.61) benign(0.006) TCGA-HT-8109-01 10 95326548 95326548 G T FFAR4 Missense_Mutation p.R24L 0.14 tolerated(0.61) benign(0.006) TCGA-HT-8109-01 11 67046685 67046685 C G ADRBK1 Missense_Mutation p.R69G 0.08 deleterious(0) benign(0.415) TCGA-HT-8109-01 12 14634097 14634097 T C ATF7IP Silent p.V1086V 0.05 TCGA-HT-8109-01 12 57911132 57911132 C T DDIT3 Missense_Mutation p.A43T 0.34 tolerated(0.07) probably_damaging(0.998) TCGA-HT-8109-01 12 6567822 6567822 G A TAPBPL Missense_Mutation p.V306I 0.07 tolerated(0.08) benign(0.048) TCGA-HT-8109-01 12 8666180 8666180 C T CLEC4D 5'UTR 0.42 TCGA-HT-8109-01 13 28609684 28609684 A G FLT3 Silent p.C515C 0.10 TCGA-HT-8109-01 13 28611413 28611413 A G FLT3 Silent p.F406F 0.10 TCGA-HT-8109-01 14 24909494 24909494 G T SDR39U1 Missense_Mutation p.A226D 0.34 tolerated(0.21) benign(0.254) TCGA-HT-8109-01 15 45398797 45398797 C T DUOX2 Missense_Mutation p.R625Q 0.16 tolerated(0.12) benign(0.004) TCGA-HT-8109-01 15 63972937 63972937 C T HERC1 Silent p.T2088T 0.12 TCGA-HT-8109-01 15 72190411 72190411 A T MYO9A Nonsense_Mutation p.L1478* 0.08 TCGA-HT-8109-01 15 86077217 86077217 A T AKAP13 Intron 0.38 TCGA-HT-8109-01 16 23646265 23646265 A G PALB2 Silent p.S534S 0.04 TCGA-HT-8109-01 17 57348316 57348316 A G GDPD1 Missense_Mutation p.M244V 0.30 tolerated(0.56) benign(0) TCGA-HT-8109-01 17 61911645 61911645 C T SMARCD2 Missense_Mutation p.G322E 0.23 deleterious(0) probably_damaging(1) TCGA-HT-8109-01 18 32887852 32887852 G A ZNF271 RNA 0.33 TCGA-HT-8109-01 19 11135091 11135091 G T SMARCA4 Missense_Mutation p.D1020Y 0.34 probably_damaging(0.992) TCGA-HT-8109-01 19 12692359 12692359 G A ZNF490 Missense_Mutation p.S177F 0.35 tolerated(0.7) benign(0.151) TCGA-HT-8109-01 19 14157294 14157294 G A IL27RA Silent p.T335T 0.07 TCGA-HT-8109-01 19 23927189 23927189 T C ZNF681 Missense_Mutation p.H388R 0.33 deleterious(0) benign(0.368) TCGA-HT-8109-01 19 44932761 44932761 C T ZNF229 Missense_Mutation p.R732K 0.08 tolerated(0.06) probably_damaging(0.933) TCGA-HT-8109-01 19 49183574 49183574 C T RN7SL345P 5'Flank 0.17 TCGA-HT-8109-01 1 111060317 111060317 C T KCNA10 Missense_Mutation p.G365R 0.55 deleterious(0) probably_damaging(1) TCGA-HT-8109-01 1 167096396 167096396 G A DUSP27 Silent p.T676T 0.10 TCGA-HT-8109-01 1 186276487 186276487 C T PRG4 Missense_Mutation p.P546S 0.32 unknown(0) TCGA-HT-8109-01 1 235345238 235345244 TCTTCAA - ARID4B Frame_Shift_Del p.I997Kfs*4 0.45 TCGA-HT-8109-01 1 247835570 247835570 G T OR13G1 Silent p.R258R 0.16 TCGA-HT-8109-01 1 28209255 28209255 G A THEMIS2 Missense_Mutation p.G474S 0.06 tolerated(0.18) possibly_damaging(0.855) TCGA-HT-8109-01 1 52498859 52498865 GAATCCG - KTI12 Frame_Shift_Del p.P190Qfs*21 0.13 TCGA-HT-8109-01 2 112944825 112944825 C T FBLN7 Silent p.L354L 0.08 TCGA-HT-8109-01 2 185802239 185802239 G A ZNF804A Missense_Mutation p.A706T 0.04 tolerated(0.5) benign(0.001) TCGA-HT-8109-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8109-01 2 72362274 72362274 C T CYP26B1 Missense_Mutation p.R235Q 0.06 deleterious(0) benign(0.104) TCGA-HT-8109-01 3 98241853 98241853 G A CLDND1 5'UTR 0.20 TCGA-HT-8109-01 4 156764859 156764859 C T ASIC5 Missense_Mutation p.A279T 0.23 tolerated(0.28) benign(0.05) TCGA-HT-8109-01 5 13919350 13919350 A G DNAH5 Silent p.L304L 0.11 TCGA-HT-8109-01 5 147889456 147889456 G T HTR4 Nonsense_Mutation p.Y213* 0.37 TCGA-HT-8109-01 5 167674102 167674102 A G TENM2 Missense_Mutation p.N2053S 0.34 deleterious(0.05) benign(0.125) TCGA-HT-8109-01 5 64096085 64096085 G A CWC27 Missense_Mutation p.G227D 0.04 deleterious(0.02) possibly_damaging(0.585) TCGA-HT-8109-01 5 81608458 81608458 T G ATP6AP1L Missense_Mutation p.S54A 0.08 tolerated(0.14) benign(0.023) TCGA-HT-8109-01 6 32261116 32261116 T G C6orf10 Missense_Mutation p.K445T 0.07 tolerated(0.17) probably_damaging(0.991) TCGA-HT-8109-01 6 54735129 54735129 C T FAM83B Nonsense_Mutation p.R29* 0.29 TCGA-HT-8109-01 8 38678119 38678119 G C TACC1 Missense_Mutation p.E453Q 0.32 tolerated(0.24) benign(0.027) TCGA-HT-8109-01 9 117552636 117552636 G A TNFSF15 3'UTR 0.31 TCGA-HT-8109-01 9 136029281 136029281 G A GBGT1 Missense_Mutation p.R243C 0.32 deleterious(0.04) probably_damaging(0.974) TCGA-HT-8109-01 9 34257924 34257924 G A KIF24 Missense_Mutation p.R561W 0.67 deleterious(0) possibly_damaging(0.88) TCGA-HT-8109-01 9 96324505 96324505 T A FAM120A Silent p.V988V 0.27 TCGA-HT-8110-01 10 89624228 89624228 T A PTEN Translation_Start_Site p.M1? 0.36 deleterious(0) probably_damaging(0.979) TCGA-HT-8110-01 10 96053387 96053387 T - PLCE1 Frame_Shift_Del p.S1720Lfs*41 0.19 TCGA-HT-8110-01 11 314978 314978 C T IFITM1 Silent p.T81T 0.24 TCGA-HT-8110-01 12 121176335 121176335 G A ACADS Splice_Site p.X266_splice 0.22 TCGA-HT-8110-01 12 96181099 96181099 G A NTN4 Missense_Mutation p.T68M 0.19 deleterious(0.04) benign(0.425) TCGA-HT-8110-01 13 113770051 113770051 C T F7 Missense_Mutation p.R170C 0.23 deleterious(0.02) benign(0.246) TCGA-HT-8110-01 14 88652226 88652226 G A KCNK10 Missense_Mutation p.R429C 0.31 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-HT-8110-01 15 77064287 77064287 C T SCAPER Silent p.V348V 0.20 TCGA-HT-8110-01 16 24373167 24373167 C T CACNG3 Missense_Mutation p.R311C 0.24 deleterious(0) probably_damaging(0.999) TCGA-HT-8110-01 16 3781375 3781375 G A CREBBP Missense_Mutation p.R1664C 0.29 unknown(0) TCGA-HT-8110-01 16 50325794 50325794 C T ADCY7 Missense_Mutation p.R175W 0.24 tolerated(0.14) benign(0.001) TCGA-HT-8110-01 16 88967963 88967963 G A CBFA2T3 Missense_Mutation p.P85S 0.30 tolerated_low_confidence(0.05) probably_damaging(1) TCGA-HT-8110-01 17 38073447 38073447 C T GSDMB Silent p.G41G 0.28 TCGA-HT-8110-01 17 5462410 5462410 G A NLRP1 Missense_Mutation p.R536W 0.29 deleterious(0) possibly_damaging(0.453) TCGA-HT-8110-01 17 8794082 8794082 G A PIK3R5 Silent p.D210D 0.18 TCGA-HT-8110-01 19 4284902 4284902 G A SHD Splice_Site p.X239_splice 0.36 TCGA-HT-8110-01 1 156499981 156499981 G C IQGAP3 Silent p.V1440V 0.35 TCGA-HT-8110-01 1 165389159 165389159 G A RXRG Silent p.S130S 0.24 TCGA-HT-8110-01 1 226252059 226252059 C T H3F3A Missense_Mutation p.R3C 0.36 deleterious_low_confidence(0.01) benign(0.002) TCGA-HT-8110-01 1 228461596 228461596 G A OBSCN Missense_Mutation p.D2130N 0.47 probably_damaging(0.999) TCGA-HT-8110-01 1 236744701 236744701 T A HEATR1 Missense_Mutation p.D859V 0.18 deleterious(0.02) possibly_damaging(0.756) TCGA-HT-8110-01 20 48522793 48522793 G A SPATA2 Missense_Mutation p.P309L 0.32 deleterious(0) benign(0.015) TCGA-HT-8110-01 20 54579018 54579018 C T CBLN4 Silent p.K70K 0.24 TCGA-HT-8110-01 21 45817649 45817649 C T TRPM2 Missense_Mutation p.A651V 0.28 deleterious(0) probably_damaging(0.937) TCGA-HT-8110-01 22 22556480 22556480 G A IGLV11-55 Silent p.A98A 0.28 TCGA-HT-8110-01 2 173431601 173431601 A T PDK1 Missense_Mutation p.R237W 0.15 deleterious(0) possibly_damaging(0.822) TCGA-HT-8110-01 2 179443857 179443857 C G TTN Missense_Mutation p.G22634R 0.26 TCGA-HT-8110-01 2 45620175 45620175 C T SRBD1 Silent p.E869E 0.38 TCGA-HT-8110-01 3 10005658 10005660 TCC - EMC3 3'UTR 0.10 TCGA-HT-8110-01 3 138341217 138341217 G A FAIM Nonsense_Mutation p.W134* 0.38 TCGA-HT-8110-01 3 42907140 42907140 A G ACKR2 Silent p.K382K 0.35 TCGA-HT-8110-01 3 49065256 49065256 A T IMPDH2 Missense_Mutation p.C140S 0.24 tolerated(1) benign(0.003) TCGA-HT-8110-01 4 13600828 13600828 T C BOD1L1 Missense_Mutation p.S2566G 0.42 benign(0.002) TCGA-HT-8110-01 4 145636526 145636526 G A HHIP Missense_Mutation p.G541E 0.32 tolerated(0.51) benign(0.31) TCGA-HT-8110-01 5 23522989 23522989 T A PRDM9 Missense_Mutation p.W293R 0.28 deleterious(0.02) possibly_damaging(0.53) TCGA-HT-8110-01 5 26881157 26881157 G T CDH9 3'UTR 0.17 TCGA-HT-8110-01 6 138601169 138601169 G A KIAA1244 Missense_Mutation p.V777M 0.39 deleterious(0) possibly_damaging(0.617) TCGA-HT-8110-01 6 41753227 41753227 C T PRICKLE4 Silent p.C177C 0.30 TCGA-HT-8110-01 7 127892092 127892092 C T LEP Silent p.C7C 0.20 TCGA-HT-8110-01 7 21956473 21956473 C T CDCA7L Missense_Mutation p.D22N 0.18 deleterious(0.01) probably_damaging(0.949) TCGA-HT-8110-01 7 38765772 38765772 C T VPS41 3'UTR 0.17 TCGA-HT-8110-01 7 55211080 55211080 G A EGFR Missense_Mutation p.R108K 0.94 deleterious(0) probably_damaging(0.998) TCGA-HT-8110-01 7 71571179 71571179 G A CALN1 Silent p.S115S 0.24 TCGA-HT-8110-01 9 123812513 123812513 C T C5 Silent p.L4L 0.30 TCGA-HT-8110-01 9 127996226 127996226 C - RABEPK Frame_Shift_Del p.Y363Mfs*6 0.21 TCGA-HT-8110-01 9 33135343 33135343 G A B4GALT1 Silent p.G164G 0.24 TCGA-HT-8110-01 9 90535986 90535986 G A SPATA31C1 RNA 0.24 TCGA-HT-8110-01 X 91133712 91133712 G A PCDH11X Missense_Mutation p.V825I 0.61 tolerated(1) benign(0.009) TCGA-HT-8111-01 10 105209278 105209278 G A CALHM2 Missense_Mutation p.L141F 0.21 tolerated(0.15) benign(0.323) TCGA-HT-8111-01 11 3681544 3681544 C T ART1 Silent p.Y265Y 0.07 TCGA-HT-8111-01 12 49425070 49425070 T G KMT2D Missense_Mutation p.Q4473P 0.19 unknown(0) TCGA-HT-8111-01 14 45400708 45400708 C A KLHL28 Missense_Mutation p.E460D 0.07 tolerated(0.37) benign(0.386) TCGA-HT-8111-01 17 7578449 7578449 C T TP53 Missense_Mutation p.A161T 0.60 deleterious(0) probably_damaging(1) TCGA-HT-8111-01 1 118554864 118554874 ATCTGGCAGAA - SPAG17 Frame_Shift_Del p.I1470Rfs*33 0.17 TCGA-HT-8111-01 1 147400598 147400598 T C GPR89B 5'UTR 0.24 TCGA-HT-8111-01 1 24460805 24460805 G C IL22RA1 Missense_Mutation p.P143A 0.23 tolerated(0.5) benign(0.001) TCGA-HT-8111-01 2 166012411 166012411 T C SCN3A Missense_Mutation p.Q345R 0.06 tolerated(0.2) probably_damaging(0.922) TCGA-HT-8111-01 2 182780777 182780777 C G SSFA2 Missense_Mutation p.P804A 0.05 tolerated(0.06) benign(0.015) TCGA-HT-8111-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8111-01 4 123107220 123107220 A G KIAA1109 Missense_Mutation p.T130A 0.21 benign(0.003) TCGA-HT-8111-01 4 123336539 123336539 G A ADAD1 Missense_Mutation p.G419R 0.13 deleterious(0) benign(0.169) TCGA-HT-8111-01 4 159603573 159603573 G A ETFDH Silent p.K134K 0.27 TCGA-HT-8111-01 6 87725488 87725488 G A HTR1E Missense_Mutation p.V146I 0.07 deleterious(0.03) probably_damaging(0.958) TCGA-HT-8111-01 8 72969169 72969169 G A TRPA1 Nonsense_Mutation p.R393* 0.41 TCGA-HT-8111-01 9 4286194 4286194 G T GLIS3 Missense_Mutation p.R78S 0.22 tolerated(0.79) benign(0) TCGA-HT-8111-01 9 96051424 96051424 C A WNK2 Missense_Mutation p.A1500D 0.08 unknown(0) TCGA-HT-8113-01 10 115380379 115380379 C T NRAP Missense_Mutation p.G953E 0.07 deleterious(0) probably_damaging(0.988) TCGA-HT-8113-01 10 120802275 120802275 T G EIF3A Missense_Mutation p.R919S 0.06 tolerated(0.06) probably_damaging(0.957) TCGA-HT-8113-01 10 30318651 30318651 G A KIAA1462 Silent p.A142A 0.13 TCGA-HT-8113-01 11 121358800 121358800 T A SORL1 Silent p.T196T 0.19 TCGA-HT-8113-01 11 56310625 56310625 C T OR5M11 Missense_Mutation p.V37I 0.05 tolerated(1) benign(0.001) TCGA-HT-8113-01 11 64855417 64855417 G A ZFPL1 Missense_Mutation p.R255Q 0.13 tolerated(0.08) benign(0.012) TCGA-HT-8113-01 12 109690903 109690903 C T ACACB Silent p.T1995T 0.12 TCGA-HT-8113-01 12 22354387 22354387 C T ST8SIA1 3'UTR 0.08 TCGA-HT-8113-01 12 80749688 80749688 C T OTOGL Silent p.G1913G 0.11 TCGA-HT-8113-01 13 21557659 21557659 A T LATS2 Missense_Mutation p.V729D 0.07 deleterious(0) probably_damaging(0.999) TCGA-HT-8113-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-HT-8113-01 16 19580757 19580757 A - C16orf62 Frame_Shift_Del p.K133Rfs*5 0.12 TCGA-HT-8113-01 16 84213255 84213255 G A TAF1C Silent p.A634A 0.10 TCGA-HT-8113-01 19 38817239 38817239 G A KCNK6 Missense_Mutation p.G110E 0.05 deleterious(0) probably_damaging(0.996) TCGA-HT-8113-01 19 9492389 9492389 T G ZNF177 Missense_Mutation p.F461C 0.17 deleterious(0) probably_damaging(0.998) TCGA-HT-8113-01 1 1309600 1309600 C T AURKAIP1 Missense_Mutation p.G93E 0.08 tolerated(1) benign(0.037) TCGA-HT-8113-01 2 50723230 50723230 G C NRXN1 Nonsense_Mutation p.Y1001* 0.27 TCGA-HT-8113-01 2 95773974 95773974 C T MRPS5 Missense_Mutation p.G195R 0.14 deleterious(0) probably_damaging(0.994) TCGA-HT-8113-01 3 148744693 148744693 G C GYG1 Missense_Mutation p.K342N 0.07 deleterious(0.03) benign(0.367) TCGA-HT-8113-01 4 38829218 38829218 C T TLR6 Missense_Mutation p.R626H 0.16 tolerated(0.9) benign(0.004) TCGA-HT-8113-01 4 40104251 40104252 - A N4BP2 Frame_Shift_Ins p.N263Kfs*11 0.16 TCGA-HT-8113-01 7 35707097 35707097 T C HERPUD2 Silent p.P147P 0.20 TCGA-HT-8113-01 7 99032678 99032678 G A ATP5J2-PTCD1 Missense_Mutation p.T112M 0.07 tolerated(0.43) benign(0.012) TCGA-HT-8113-01 8 143822512 143822512 G A SLURP1 3'UTR 0.10 TCGA-HT-8113-01 9 139118662 139118662 G A QSOX2 Silent p.A129A 0.04 TCGA-HT-8113-01 X 152037754 152037754 C T NSDHL 3'UTR 0.29 TCGA-HT-8113-01 X 54335536 54335536 C A WNK3 Missense_Mutation p.S308I 0.24 deleterious(0) probably_damaging(1) TCGA-HT-8114-01 11 103907511 103907511 C A DDI1 5'UTR 0.36 TCGA-HT-8114-01 11 126134414 126134414 C T SRPR Missense_Mutation p.V516M 0.10 deleterious(0) probably_damaging(1) TCGA-HT-8114-01 11 62380964 62380964 G A ROM1 Missense_Mutation p.A71T 0.15 tolerated(0.22) benign(0.029) TCGA-HT-8114-01 11 67192113 67192113 C T CARNS1 3'UTR 0.64 TCGA-HT-8114-01 13 114531664 114531664 C T GAS6 Silent p.A388A 0.15 TCGA-HT-8114-01 14 102323220 102323220 A G PPP2R5C Missense_Mutation p.M129V 0.05 deleterious(0.01) benign(0.104) TCGA-HT-8114-01 14 89044401 89044401 T C ZC3H14 Missense_Mutation p.V399A 0.27 tolerated(0.22) benign(0.007) TCGA-HT-8114-01 17 7578291 7578291 T C TP53 Splice_Site p.X187_splice 0.64 TCGA-HT-8114-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.14 deleterious(0) probably_damaging(1) TCGA-HT-8114-01 19 44793178 44793178 T C ZNF235 Missense_Mutation p.H137R 0.08 tolerated(0.21) benign(0.001) TCGA-HT-8114-01 1 85488156 85488156 A T MCOLN3 Intron 0.50 TCGA-HT-8114-01 20 29631583 29631583 C A FRG1B Missense_Mutation p.P127T 0.36 deleterious(0.01) probably_damaging(0.933) TCGA-HT-8114-01 21 35183494 35183494 G A ITSN1 Silent p.T845T 0.09 TCGA-HT-8114-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8114-01 2 68270036 68270036 T G C1D Silent p.G137G 0.33 TCGA-HT-8114-01 5 141325159 141325159 G C PCDH12 Missense_Mutation p.S1114R 0.10 deleterious(0) possibly_damaging(0.851) TCGA-HT-8114-01 5 150932869 150932869 G A FAT2 Missense_Mutation p.P1342L 0.29 possibly_damaging(0.716) TCGA-HT-8114-01 5 90086940 90086940 C T GPR98 Missense_Mutation p.A4765V 0.09 probably_damaging(0.935) TCGA-HT-8114-01 6 136682203 136682203 C T MAP7 Silent p.Q569Q 0.62 TCGA-HT-8114-01 7 44042210 44042210 C T SPDYE1 Missense_Mutation p.P94L 0.19 deleterious(0.02) benign(0.033) TCGA-HT-8114-01 8 124351613 124351613 T C ATAD2 Missense_Mutation p.K931R 0.29 tolerated(0.24) benign(0.002) TCGA-HT-8114-01 X 76937602 76937603 - T ATRX Frame_Shift_Ins p.I1049Nfs*4 0.44 TCGA-HT-8114-01 X 76938089 76938092 TCTC - ATRX Frame_Shift_Del p.E886Lfs*18 0.11 TCGA-HT-8114-01 X 83724060 83724060 G T HDX Missense_Mutation p.P224Q 0.11 tolerated(0.14) probably_damaging(0.983) TCGA-HT-8558-01 14 89154773 89154773 T C EML5 Missense_Mutation p.K862E 0.06 tolerated(0.17) benign(0.084) TCGA-HT-8558-01 19 20117231 20117231 C G ZNF682 Missense_Mutation p.K360N 0.12 deleterious(0.02) possibly_damaging(0.863) TCGA-HT-8563-01 10 134752146 134752146 G A TTC40 Silent p.N161N 0.31 TCGA-HT-8563-01 10 28414006 28414006 C T MPP7 Silent p.K154K 0.05 TCGA-HT-8563-01 11 59132063 59132063 C T OR5AN1 Silent p.L44L 0.20 TCGA-HT-8563-01 11 76877199 76877199 T A MYO7A Missense_Mutation p.D596E 0.25 tolerated(1) possibly_damaging(0.48) TCGA-HT-8563-01 12 111350933 111350933 C T MYL2 Silent p.L123L 0.09 TCGA-HT-8563-01 12 118199044 118199044 C T KSR2 Missense_Mutation p.R253Q 0.45 tolerated(0.1) possibly_damaging(0.709) TCGA-HT-8563-01 12 121790075 121790075 C G ANAPC5 Silent p.V23V 0.17 TCGA-HT-8563-01 12 122012481 122012481 A C KDM2B Missense_Mutation p.F123C 0.27 deleterious(0) probably_damaging(1) TCGA-HT-8563-01 12 85518292 85518292 A G LRRIQ1 Silent p.E1334E 0.34 TCGA-HT-8563-01 14 50655245 50655245 A C SOS2 Missense_Mutation p.F228L 0.14 tolerated(0.53) benign(0.129) TCGA-HT-8563-01 14 81209521 81209521 G C CEP128 Missense_Mutation p.L902V 0.40 deleterious(0.04) probably_damaging(0.998) TCGA-HT-8563-01 14 95107273 95107273 C G SERPINA13P RNA 0.15 TCGA-HT-8563-01 16 20492162 20492162 G A ACSM2A Silent p.S476S 0.19 TCGA-HT-8563-01 16 2122981 2122981 A C TSC2 Missense_Mutation p.K784N 0.21 deleterious(0.03) benign(0.134) TCGA-HT-8563-01 16 57504925 57504925 C G POLR2C Missense_Mutation p.P241R 0.05 deleterious(0) probably_damaging(0.991) TCGA-HT-8563-01 16 67578714 67578714 G A FAM65A Silent p.P970P 0.23 TCGA-HT-8563-01 17 72832811 72832811 C G TMEM104 Missense_Mutation p.S492R 0.25 deleterious(0.01) benign(0.082) TCGA-HT-8563-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.15 deleterious(0) probably_damaging(1) TCGA-HT-8563-01 17 7578475 7578475 G T TP53 Missense_Mutation p.P152Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-HT-8563-01 19 6741259 6741259 C A TRIP10 Missense_Mutation p.P55H 0.21 deleterious(0) benign(0.305) TCGA-HT-8563-01 1 161967933 161967933 C T OLFML2B Missense_Mutation p.A386T 0.23 tolerated(0.36) benign(0) TCGA-HT-8563-01 1 75685524 75685524 A G SLC44A5 Missense_Mutation p.L380S 0.17 deleterious(0) probably_damaging(0.984) TCGA-HT-8563-01 1 77093225 77093225 A T ST6GALNAC3 Missense_Mutation p.I238L 0.19 possibly_damaging(0.5) TCGA-HT-8563-01 22 24179853 24179853 G A DERL3 Silent p.D172D 0.18 TCGA-HT-8563-01 2 110881295 110881295 C T NPHP1 3'UTR 0.16 TCGA-HT-8563-01 2 135180442 135180442 C G MGAT5 Missense_Mutation p.N582K 0.18 deleterious(0.04) benign(0.007) TCGA-HT-8563-01 2 179413638 179413638 G A TTN Silent p.G30905G 0.20 TCGA-HT-8563-01 2 183593668 183593668 C T DNAJC10 Nonsense_Mutation p.R194* 0.14 TCGA-HT-8563-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-8563-01 3 114070216 114070216 G A ZBTB20 Nonsense_Mutation p.Q237* 0.26 TCGA-HT-8563-01 3 119812348 119812348 G A GSK3B 5'UTR 0.17 TCGA-HT-8563-01 4 23815630 23815630 T C PPARGC1A Silent p.E492E 0.20 TCGA-HT-8563-01 4 5461892 5461892 C G STK32B Nonsense_Mutation p.Y282* 0.07 TCGA-HT-8563-01 X 101970909 101970909 A G GPRASP2 Missense_Mutation p.D371G 0.14 deleterious(0.04) benign(0.005) TCGA-HT-8563-01 X 129318702 129318702 C G RAB33A Silent p.S234S 0.08 TCGA-HT-8563-01 X 140995062 140995062 T C MAGEC1 Silent p.S624S 0.26 TCGA-HT-8563-01 X 54784174 54784174 C T ITIH6 Missense_Mutation p.C778Y 0.19 tolerated(0.06) benign(0) TCGA-HT-8563-01 X 76890195 76890195 C G ATRX Splice_Site p.X1567_splice 0.22 TCGA-HT-8563-01 X 85158665 85158665 G C CHM Intron 0.27 TCGA-HT-8564-01 10 104141973 104141973 C T GBF1 Silent p.G1820G 0.23 TCGA-HT-8564-01 10 105184818 105184818 G A PDCD11 Silent p.T947T 0.20 TCGA-HT-8564-01 10 105209166 105209166 C T CALHM2 Missense_Mutation p.R178H 0.21 tolerated(0.11) possibly_damaging(0.678) TCGA-HT-8564-01 10 105727509 105727511 CTT - SLK In_Frame_Del p.F4del 0.25 TCGA-HT-8564-01 10 105883598 105883598 G A SFR1 Missense_Mutation p.A88T 0.09 tolerated(0.22) benign(0.026) TCGA-HT-8564-01 10 120796752 120796752 G A EIF3A Silent p.D1266D 0.20 TCGA-HT-8564-01 10 12142226 12142226 C T DHTKD1 Missense_Mutation p.A574V 0.22 deleterious(0) probably_damaging(0.999) TCGA-HT-8564-01 10 125426287 125426287 G A GPR26 Missense_Mutation p.D122N 0.28 tolerated(0.17) possibly_damaging(0.493) TCGA-HT-8564-01 10 125426409 125426409 G A GPR26 Silent p.R162R 0.45 TCGA-HT-8564-01 10 125804256 125804256 G A CHST15 Silent p.H242H 0.39 TCGA-HT-8564-01 10 127455225 127455227 TTC - MMP21 3'UTR 0.51 TCGA-HT-8564-01 10 134218375 134218375 C - PWWP2B Frame_Shift_Del p.F126Sfs*60 0.26 TCGA-HT-8564-01 10 134595556 134595556 G A INPP5A 3'UTR 0.38 TCGA-HT-8564-01 10 135101799 135101799 T C TUBGCP2 Missense_Mutation p.Y547C 0.21 deleterious(0) probably_damaging(0.975) TCGA-HT-8564-01 10 27322259 27322259 T - ANKRD26 Frame_Shift_Del p.K1234Nfs*19 0.22 TCGA-HT-8564-01 10 28023587 28023587 G A MKX Silent p.Y212Y 0.61 TCGA-HT-8564-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.38 TCGA-HT-8564-01 10 29822002 29822004 CTT - SVIL In_Frame_Del p.E431del 0.19 TCGA-HT-8564-01 10 30984970 30984970 G A SVILP1 RNA 0.14 TCGA-HT-8564-01 10 49687793 49687793 G A ARHGAP22 Missense_Mutation p.R113W 0.30 deleterious(0.02) benign(0.018) TCGA-HT-8564-01 10 70645798 70645798 G A STOX1 Missense_Mutation p.R749H 0.26 tolerated(0.49) benign(0) TCGA-HT-8564-01 10 71258152 71258152 G A TSPAN15 Silent p.T190T 0.39 TCGA-HT-8564-01 10 7618615 7618615 G A ITIH5 Silent p.D593D 0.04 TCGA-HT-8564-01 10 8007427 8007427 C - TAF3 Frame_Shift_Del p.P653Hfs*44 0.35 TCGA-HT-8564-01 10 80968196 80968196 G A ZMIZ1 Missense_Mutation p.G55D 0.05 possibly_damaging(0.722) TCGA-HT-8564-01 10 95095762 95095762 G A MYOF Silent p.G1493G 0.04 TCGA-HT-8564-01 10 96480238 96480238 C T CYP2C18 Missense_Mutation p.T302M 0.19 deleterious(0.02) possibly_damaging(0.784) TCGA-HT-8564-01 10 98064310 98064310 C T DNTT Missense_Mutation p.T19M 0.19 tolerated(0.21) benign(0.007) TCGA-HT-8564-01 10 99696063 99696063 G A CRTAC1 Silent p.I95I 0.44 TCGA-HT-8564-01 11 105967614 105967614 C T AASDHPPT Nonsense_Mutation p.R304* 0.23 TCGA-HT-8564-01 11 1080294 1080294 C T MUC2 Silent p.D338D 0.21 TCGA-HT-8564-01 11 117100140 117100140 G A PCSK7 Missense_Mutation p.R141C 0.21 deleterious(0) probably_damaging(0.993) TCGA-HT-8564-01 11 117352692 117352692 C T DSCAML1 Missense_Mutation p.V909I 0.11 tolerated(1) benign(0.002) TCGA-HT-8564-01 11 119029628 119029628 G A ABCG4 Missense_Mutation p.V476M 0.26 tolerated(0.2) benign(0.044) TCGA-HT-8564-01 11 123596990 123596990 C T ZNF202 Silent p.A554A 0.47 TCGA-HT-8564-01 11 123909049 123909049 G A OR10G7 Silent p.I220I 0.22 TCGA-HT-8564-01 11 1265465 1265465 C T MUC5B Missense_Mutation p.T2452M 0.16 unknown(0) TCGA-HT-8564-01 11 15197574 15197574 G A INSC Missense_Mutation p.R162H 0.41 deleterious(0.03) benign(0.271) TCGA-HT-8564-01 11 1578531 1578531 C T DUSP8 Silent p.P365P 0.60 TCGA-HT-8564-01 11 18503252 18503252 G A TSG101 Silent p.N336N 0.38 TCGA-HT-8564-01 11 18723160 18723160 G A TMEM86A Silent p.S109S 0.50 TCGA-HT-8564-01 11 2426083 2426083 G A TRPM5 3'UTR 0.28 TCGA-HT-8564-01 11 2428525 2428525 G A TRPM5 Missense_Mutation p.T981M 0.56 deleterious(0) probably_damaging(0.926) TCGA-HT-8564-01 11 314210 314210 C - IFITM1 Frame_Shift_Del p.S16Afs*9 0.15 TCGA-HT-8564-01 11 31805009 31805009 C T ELP4 Silent p.S404S 0.25 TCGA-HT-8564-01 11 32997894 32997895 - A QSER1 Frame_Shift_Ins p.N1697Kfs*2 0.31 TCGA-HT-8564-01 11 33120307 33120307 G A CSTF3 Missense_Mutation p.R353C 0.19 tolerated(0.07) probably_damaging(0.978) TCGA-HT-8564-01 11 33308890 33308891 - A HIPK3 Frame_Shift_Ins p.L313Ifs*10 0.17 TCGA-HT-8564-01 11 33604946 33604946 G A KIAA1549L Missense_Mutation p.V1192M 0.45 deleterious(0) probably_damaging(0.999) TCGA-HT-8564-01 11 44255740 44255740 G C EXT2 Missense_Mutation p.D661H 0.29 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 11 46829683 46829683 T - CKAP5 Frame_Shift_Del p.K292Nfs*12 0.20 TCGA-HT-8564-01 11 4944910 4944910 G A OR51G1 Silent p.Y220Y 0.23 TCGA-HT-8564-01 11 5322671 5322671 C T OR51B4 Missense_Mutation p.R169H 0.43 tolerated(1) benign(0.002) TCGA-HT-8564-01 11 61641227 61641227 C T FADS3 3'UTR 0.62 TCGA-HT-8564-01 11 61912746 61912746 C T INCENP Silent p.D607D 0.07 TCGA-HT-8564-01 11 62362913 62362916 GAGA - MTA2 Frame_Shift_Del p.S435Lfs*26 0.25 TCGA-HT-8564-01 11 62649529 62649529 A - SLC3A2 Frame_Shift_Del p.K301Rfs*31 0.45 TCGA-HT-8564-01 11 64375280 64375280 G A NRXN2 Silent p.D1509D 0.23 TCGA-HT-8564-01 11 64506852 64506852 C T RASGRP2 Missense_Mutation p.V265I 0.14 tolerated(0.3) benign(0.046) TCGA-HT-8564-01 11 64532975 64532975 G A SF1 Missense_Mutation p.A658V 0.50 deleterious_low_confidence(0.01) unknown(0) TCGA-HT-8564-01 11 64621747 64621747 C - EHD1 3'UTR 0.40 TCGA-HT-8564-01 11 64875676 64875676 G A VPS51 Missense_Mutation p.G245S 0.18 tolerated(0.46) benign(0.011) TCGA-HT-8564-01 11 654033 654033 C T DEAF1 Missense_Mutation p.G508S 0.18 deleterious(0.03) possibly_damaging(0.483) TCGA-HT-8564-01 11 65635366 65635366 C T EFEMP2 Missense_Mutation p.R379H 0.24 deleterious(0) probably_damaging(0.962) TCGA-HT-8564-01 11 66243521 66243521 C A PELI3 Silent p.A431A 0.33 TCGA-HT-8564-01 11 66297334 66297334 C T BBS1 Missense_Mutation p.R462C 0.41 deleterious(0.05) possibly_damaging(0.711) TCGA-HT-8564-01 11 66460877 66460877 G A SPTBN2 Missense_Mutation p.A1545V 0.19 tolerated(0.16) benign(0.155) TCGA-HT-8564-01 11 66612694 66612696 TCT - RCE1 In_Frame_Del p.F227del 0.46 TCGA-HT-8564-01 11 67012792 67012792 C T KDM2A Missense_Mutation p.R566W 0.30 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 11 67402373 67402373 G - TBX10 Frame_Shift_Del p.F98Sfs*3 0.38 TCGA-HT-8564-01 11 67925272 67925272 G A SUV420H1 Silent p.D847D 0.47 TCGA-HT-8564-01 11 68748335 68748335 C T MRGPRD Missense_Mutation p.G41R 0.50 deleterious(0) probably_damaging(0.997) TCGA-HT-8564-01 11 72424115 72424115 C T ARAP1 Intron 0.23 TCGA-HT-8564-01 11 800359 800359 G A PIDD Missense_Mutation p.R712W 0.29 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 11 82550376 82550376 G A PRCP Missense_Mutation p.S359L 0.20 deleterious(0) possibly_damaging(0.842) TCGA-HT-8564-01 11 82877339 82877340 AG - PCF11 Frame_Shift_Del p.Q467Rfs*10 0.32 TCGA-HT-8564-01 11 8752647 8752647 G A ST5 Missense_Mutation p.R64W 0.09 deleterious_low_confidence(0.02) benign(0.432) TCGA-HT-8564-01 11 92568224 92568224 G A FAT3 Missense_Mutation p.A3354T 0.08 benign(0.176) TCGA-HT-8564-01 11 94554766 94554766 G A AMOTL1 Missense_Mutation p.A398T 0.43 tolerated(0.69) benign(0.022) TCGA-HT-8564-01 11 9522711 9522711 C T ZNF143 Silent p.H347H 0.33 TCGA-HT-8564-01 12 104208744 104208744 C T NT5DC3 Missense_Mutation p.A122T 0.38 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 12 104376688 104376688 C T TDG Missense_Mutation p.T197M 0.34 deleterious(0) probably_damaging(0.982) TCGA-HT-8564-01 12 10584712 10584712 T C KLRC2 Missense_Mutation p.K193E 0.19 deleterious(0.02) benign(0.377) TCGA-HT-8564-01 12 109889453 109889453 C T KCTD10 Missense_Mutation p.V297M 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.868) TCGA-HT-8564-01 12 113354493 113354494 - A OAS1 Frame_Shift_Ins p.N280Kfs*5 0.31 TCGA-HT-8564-01 12 120128190 120128190 C T CIT Silent p.A1984A 0.36 TCGA-HT-8564-01 12 120189940 120189940 G A CIT Missense_Mutation p.A940V 0.33 tolerated(0.33) benign(0.022) TCGA-HT-8564-01 12 121000755 121000755 A G RNF10 Missense_Mutation p.E379G 0.33 deleterious(0.01) benign(0.387) TCGA-HT-8564-01 12 12302045 12302045 C T LRP6 Missense_Mutation p.E1013K 0.41 tolerated(0.23) benign(0.006) TCGA-HT-8564-01 12 123473364 123473364 G A PITPNM2 Silent p.D929D 0.27 TCGA-HT-8564-01 12 123479976 123479976 C T PITPNM2 Missense_Mutation p.E672K 0.17 deleterious(0.04) probably_damaging(0.991) TCGA-HT-8564-01 12 124826571 124826571 C T NCOR2 Silent p.P1662P 0.29 TCGA-HT-8564-01 12 129566505 129566505 G A TMEM132D Silent p.H574H 0.35 TCGA-HT-8564-01 12 130921520 130921520 G A RIMBP2 Missense_Mutation p.P641L 0.47 tolerated(0.05) benign(0.102) TCGA-HT-8564-01 12 130927121 130927121 G A RIMBP2 Missense_Mutation p.T242M 0.20 tolerated(0.11) benign(0.313) TCGA-HT-8564-01 12 133214643 133214643 G A POLE Missense_Mutation p.R1879C 0.13 deleterious(0.04) possibly_damaging(0.773) TCGA-HT-8564-01 12 133250239 133250239 G A POLE Silent p.A427A 0.37 TCGA-HT-8564-01 12 133254167 133254167 G A POLE Silent p.H239H 0.34 TCGA-HT-8564-01 12 24736338 24736338 C T LINC00477 RNA 0.25 TCGA-HT-8564-01 12 27069110 27069110 C T ASUN Missense_Mutation p.R358H 0.29 deleterious(0) probably_damaging(0.969) TCGA-HT-8564-01 12 33529723 33529723 G A SYT10 3'UTR 0.45 TCGA-HT-8564-01 12 49221502 49221504 GGA - CACNB3 In_Frame_Del p.E427del 0.26 TCGA-HT-8564-01 12 49392947 49392947 A G DDN Missense_Mutation p.S42P 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-HT-8564-01 12 49422916 49422916 A G KMT2D Missense_Mutation p.S4727P 0.17 unknown(0) TCGA-HT-8564-01 12 49445202 49445202 C T KMT2D Missense_Mutation p.R755Q 0.38 unknown(0) TCGA-HT-8564-01 12 49445921 49445921 C T KMT2D Silent p.L515L 0.34 TCGA-HT-8564-01 12 5021390 5021390 C T KCNA1 Silent p.G282G 0.36 TCGA-HT-8564-01 12 51586185 51586185 C T POU6F1 Missense_Mutation p.A107T 0.34 tolerated(0.43) benign(0) TCGA-HT-8564-01 12 52713013 52713013 C T KRT83 Missense_Mutation p.V174M 0.33 tolerated(0.07) benign(0.316) TCGA-HT-8564-01 12 56094110 56094110 G A ITGA7 Silent p.Y246Y 0.31 TCGA-HT-8564-01 12 56568511 56568511 G A SMARCC2 Nonsense_Mutation p.R474* 0.15 TCGA-HT-8564-01 12 56815752 56815752 C T TIMELESS Missense_Mutation p.R858Q 0.45 deleterious(0) probably_damaging(0.979) TCGA-HT-8564-01 12 58152527 58152527 G A MARCH9 Silent p.T296T 0.30 TCGA-HT-8564-01 12 62715345 62715345 T C USP15 Silent p.N192N 0.39 TCGA-HT-8564-01 12 64811871 64811871 G A XPOT Silent p.T82T 0.31 TCGA-HT-8564-01 12 64825542 64825542 G A XPOT Missense_Mutation p.C734Y 0.31 tolerated(0.14) possibly_damaging(0.54) TCGA-HT-8564-01 12 65637238 65637238 T C LEMD3 Silent p.F792F 0.39 TCGA-HT-8564-01 12 674455 674455 G A NINJ2 Silent p.F171F 0.09 TCGA-HT-8564-01 12 70048984 70048984 G A BEST3 Silent p.S570S 0.23 TCGA-HT-8564-01 12 7310123 7310123 G A CLSTN3 Missense_Mutation p.V856M 0.41 deleterious(0) possibly_damaging(0.812) TCGA-HT-8564-01 12 91348005 91348005 G A CCER1 Missense_Mutation p.P172L 0.35 deleterious(0) probably_damaging(0.96) TCGA-HT-8564-01 12 94769688 94769688 G A CCDC41 Nonsense_Mutation p.R303* 0.21 TCGA-HT-8564-01 13 115016143 115016143 T C CDC16 Missense_Mutation p.M364T 0.75 deleterious(0) probably_damaging(0.989) TCGA-HT-8564-01 14 100531801 100531801 G A EVL 5'UTR 0.24 TCGA-HT-8564-01 14 104490932 104490932 C T TDRD9 Missense_Mutation p.T878M 0.59 deleterious(0.03) benign(0.154) TCGA-HT-8564-01 14 105354097 105354097 G A CEP170B Missense_Mutation p.R1174Q 0.31 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 14 106092382 106092382 C T IGHG4 Missense_Mutation p.V8I 0.82 tolerated(0.06) benign(0.38) TCGA-HT-8564-01 14 20846220 20846220 G A TEP1 Missense_Mutation p.A1895V 0.72 tolerated(0.07) possibly_damaging(0.701) TCGA-HT-8564-01 14 21486616 21486616 C T NDRG2 Silent p.K287K 0.11 TCGA-HT-8564-01 14 24629769 24629769 G A RNF31 Missense_Mutation p.R1069H 0.57 deleterious(0) probably_damaging(0.999) TCGA-HT-8564-01 14 24737796 24737796 G A RABGGTA Silent p.N310N 0.68 TCGA-HT-8564-01 14 24901644 24901644 G A KHNYN Missense_Mutation p.A393T 0.19 tolerated(0.29) benign(0.006) TCGA-HT-8564-01 14 55818984 55818984 C T FBXO34 Missense_Mutation p.R626C 0.60 deleterious(0.04) probably_damaging(0.999) TCGA-HT-8564-01 14 58605364 58605364 C T C14orf37 Missense_Mutation p.G238D 0.63 tolerated(0.26) benign(0) TCGA-HT-8564-01 14 65253771 65253771 G A SPTB Missense_Mutation p.T971M 0.81 tolerated(0.07) benign(0.003) TCGA-HT-8564-01 14 76668169 76668173 AAGAA - GPATCH2L Frame_Shift_Del p.K477Pfs*15 0.51 TCGA-HT-8564-01 14 76905826 76905826 G A ESRRB Missense_Mutation p.G44S 0.69 tolerated_low_confidence(0.67) benign(0.053) TCGA-HT-8564-01 14 91806240 91806240 G A CCDC88C Silent p.D204D 0.30 TCGA-HT-8564-01 14 93118358 93118358 G A RIN3 Missense_Mutation p.V322I 0.67 tolerated(0.14) unknown(0) TCGA-HT-8564-01 14 93963615 93963615 G - UNC79 Frame_Shift_Del p.L119Cfs*25 0.38 TCGA-HT-8564-01 14 96864584 96864584 C T AK7 Missense_Mutation p.A93V 0.60 tolerated(0.5) benign(0.062) TCGA-HT-8564-01 15 100339849 100339849 G A DNM1P46 RNA 0.26 TCGA-HT-8564-01 15 101567987 101567987 G A LRRK1 Missense_Mutation p.E891K 0.27 deleterious(0) probably_damaging(0.998) TCGA-HT-8564-01 15 25331678 25331678 C T SNORD116-19 RNA 0.19 TCGA-HT-8564-01 15 30003072 30003072 C T TJP1 Silent p.A1445A 0.18 TCGA-HT-8564-01 15 35274621 35274621 T - ZNF770 Frame_Shift_Del p.I339Sfs*13 0.22 TCGA-HT-8564-01 15 45974846 45974846 C T SQRDL Silent p.T345T 0.39 TCGA-HT-8564-01 15 55647590 55647590 G A PIGB Missense_Mutation p.R542Q 0.10 deleterious(0.04) possibly_damaging(0.859) TCGA-HT-8564-01 15 70991907 70991907 C T UACA Silent p.K57K 0.40 TCGA-HT-8564-01 15 77425402 77425402 G A PEAK1 Missense_Mutation p.A1341V 0.05 deleterious(0) probably_damaging(0.998) TCGA-HT-8564-01 15 84651306 84651306 G A ADAMTSL3 Missense_Mutation p.D976N 0.38 deleterious(0.02) probably_damaging(0.939) TCGA-HT-8564-01 15 85382932 85382932 G A ALPK3 Splice_Site p.X343_splice 0.36 TCGA-HT-8564-01 15 85403041 85403041 G A ALPK3 Missense_Mutation p.V1536M 0.45 deleterious(0) probably_damaging(0.995) TCGA-HT-8564-01 15 86800128 86800128 G A AGBL1 Silent p.V214V 0.18 TCGA-HT-8564-01 15 90176401 90176401 C T KIF7 Missense_Mutation p.G897S 0.22 tolerated(0.05) probably_damaging(0.91) TCGA-HT-8564-01 15 91455396 91455396 G A MAN2A2 Missense_Mutation p.V745I 0.21 tolerated(0.38) benign(0.008) TCGA-HT-8564-01 15 93489391 93489391 T C CHD2 Missense_Mutation p.I441T 0.42 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 16 1250283 1250283 G A CACNA1H Silent p.P277P 0.09 TCGA-HT-8564-01 16 1400178 1400180 AAG - TSR3 In_Frame_Del p.F194del 0.39 TCGA-HT-8564-01 16 15711316 15711316 G A KIAA0430 Missense_Mutation p.R933W 0.23 deleterious(0.02) benign(0.039) TCGA-HT-8564-01 16 15758701 15758701 G A NDE1 Silent p.A22A 0.53 TCGA-HT-8564-01 16 21049298 21049298 C T DNAH3 Missense_Mutation p.A1579T 0.08 deleterious(0) probably_damaging(0.959) TCGA-HT-8564-01 16 2202854 2202854 C T RAB26 Missense_Mutation p.H168Y 0.24 deleterious(0.01) benign(0.072) TCGA-HT-8564-01 16 2367755 2367755 C T ABCA3 Missense_Mutation p.R295H 0.46 tolerated(0.6) benign(0.022) TCGA-HT-8564-01 16 2522004 2522004 C T NTN3 Missense_Mutation p.A101V 0.21 tolerated(0.49) benign(0.007) TCGA-HT-8564-01 16 2522180 2522180 C T NTN3 Missense_Mutation p.R160C 0.31 deleterious(0) probably_damaging(0.999) TCGA-HT-8564-01 16 27445714 27445714 G A IL21R Silent p.T32T 0.52 TCGA-HT-8564-01 16 29900012 29900012 C T SEZ6L2 Silent p.P296P 0.16 TCGA-HT-8564-01 16 30035371 30035371 C T C16orf92 Missense_Mutation p.A114V 0.45 tolerated(0.22) benign(0) TCGA-HT-8564-01 16 31230620 31230620 G A TRIM72 Missense_Mutation p.R166H 0.23 tolerated(0.2) benign(0.277) TCGA-HT-8564-01 16 31512031 31512031 C T C16orf58 Missense_Mutation p.R146H 0.21 deleterious(0.02) benign(0.235) TCGA-HT-8564-01 16 3169669 3169669 C T ZNF205 Silent p.Y336Y 0.48 TCGA-HT-8564-01 16 53190078 53190078 C T CHD9 Missense_Mutation p.A26V 0.11 benign(0.356) TCGA-HT-8564-01 16 53260306 53260307 - A CHD9 Frame_Shift_Ins p.Y645Ifs*11 0.21 TCGA-HT-8564-01 16 66424460 66424460 C T CDH5 Silent p.P312P 0.52 TCGA-HT-8564-01 16 67188655 67188655 C T TRADD Missense_Mutation p.R279H 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-HT-8564-01 16 67289369 67289369 G A SLC9A5 Missense_Mutation p.G243E 0.49 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 16 67572573 67572575 AGG - FAM65A Splice_Site p.X55_splice 0.60 TCGA-HT-8564-01 16 67863714 67863714 G A CENPT Silent p.D380D 0.27 TCGA-HT-8564-01 16 70400563 70400563 C T DDX19A Silent p.S273S 0.30 TCGA-HT-8564-01 16 71674814 71674814 G A MARVELD3 Missense_Mutation p.A373T 0.47 tolerated(0.17) possibly_damaging(0.759) TCGA-HT-8564-01 16 72130788 72130788 C T DHX38 Missense_Mutation p.R131C 0.50 deleterious(0) possibly_damaging(0.876) TCGA-HT-8564-01 16 72133711 72133711 C T DHX38 Silent p.Y347Y 0.60 TCGA-HT-8564-01 16 77775744 77775744 A - NUDT7 Frame_Shift_Del p.K207Nfs*14 0.45 TCGA-HT-8564-01 16 81076800 81076801 TG - ATMIN Frame_Shift_Del p.A234Tfs*11 0.20 TCGA-HT-8564-01 16 81324235 81324236 AT - BCMO1 3'UTR 0.36 TCGA-HT-8564-01 16 814961 814961 G A MSLN Silent p.T145T 0.23 TCGA-HT-8564-01 16 836114 836114 C T RPUSD1 Missense_Mutation p.D259N 0.54 tolerated_low_confidence(0.46) benign(0.415) TCGA-HT-8564-01 16 855739 855739 G A PRR25 Silent p.P99P 0.45 TCGA-HT-8564-01 16 8858658 8858658 G A ABAT Missense_Mutation p.A171T 0.20 deleterious(0) probably_damaging(0.997) TCGA-HT-8564-01 16 88873762 88873762 G A CDT1 Missense_Mutation p.R450H 0.45 tolerated(0.1) benign(0.355) TCGA-HT-8564-01 16 88958664 88958664 C T CBFA2T3 Silent p.V203V 0.23 TCGA-HT-8564-01 16 89256813 89256813 C T CDH15 Missense_Mutation p.R381W 0.20 tolerated(0.19) probably_damaging(0.953) TCGA-HT-8564-01 17 10299869 10299869 C T MYH8 Splice_Site p.X1510_splice 0.71 TCGA-HT-8564-01 17 11660881 11660881 G A DNAH9 Silent p.P2289P 0.20 TCGA-HT-8564-01 17 11711063 11711063 G A DNAH9 Missense_Mutation p.R2812H 0.07 probably_damaging(1) TCGA-HT-8564-01 17 16336966 16336966 G A TRPV2 Missense_Mutation p.V690I 0.21 tolerated(0.07) benign(0.081) TCGA-HT-8564-01 17 19641649 19641649 G - ALDH3A1 Frame_Shift_Del p.P445Rfs*6 0.49 TCGA-HT-8564-01 17 21319341 21319341 C T KCNJ12 Silent p.R229R 0.30 TCGA-HT-8564-01 17 2265510 2265510 C T SGSM2 Missense_Mutation p.A135V 0.23 deleterious(0) benign(0.286) TCGA-HT-8564-01 17 27065189 27065189 G A NEK8 Missense_Mutation p.R383H 0.26 deleterious(0.01) probably_damaging(0.912) TCGA-HT-8564-01 17 29562657 29562660 TGTT - NF1 Frame_Shift_Del p.F1247Ifs*18 0.79 TCGA-HT-8564-01 17 2995776 2995776 C T OR1D2 Missense_Mutation p.R172Q 0.76 tolerated(0.13) benign(0.023) TCGA-HT-8564-01 17 37420470 37420471 AT - FBXL20 Frame_Shift_Del p.Y387* 0.45 TCGA-HT-8564-01 17 37866098 37866098 C T ERBB2 Missense_Mutation p.R203C 0.78 tolerated(0.17) possibly_damaging(0.545) TCGA-HT-8564-01 17 39274307 39274307 G T KRTAP4-11 Silent p.P87P 0.17 TCGA-HT-8564-01 17 3999984 3999984 C T ZZEF1 Silent p.T561T 0.77 TCGA-HT-8564-01 17 40011545 40011545 A - KLHL11 Frame_Shift_Del p.C192Vfs*20 0.13 TCGA-HT-8564-01 17 40766567 40766567 G A TUBG1 Silent p.P350P 0.79 TCGA-HT-8564-01 17 40820242 40820244 GGA - PLEKHH3 In_Frame_Del p.P762del 0.79 TCGA-HT-8564-01 17 43314943 43314943 G T FMNL1 Silent p.A277A 0.69 TCGA-HT-8564-01 17 4461802 4461802 G A GGT6 Silent p.S330S 0.19 TCGA-HT-8564-01 17 45788024 45788024 G A TBKBP1 3'UTR 0.06 TCGA-HT-8564-01 17 47375758 47375758 C T ZNF652 3'UTR 0.76 TCGA-HT-8564-01 17 4804399 4804399 C T CHRNE Missense_Mutation p.V230I 0.63 tolerated(0.85) benign(0.015) TCGA-HT-8564-01 17 48157736 48157736 C T ITGA3 Silent p.I939I 0.26 TCGA-HT-8564-01 17 48616601 48616601 C T EPN3 Silent p.A272A 0.75 TCGA-HT-8564-01 17 58259033 58259033 C T USP32 Silent p.R1400R 0.18 TCGA-HT-8564-01 17 62144066 62144066 C T ERN1 Silent p.P269P 0.87 TCGA-HT-8564-01 17 71204383 71204384 CG - FAM104A 3'UTR 0.46 TCGA-HT-8564-01 17 7216932 7216935 AGTG - GPS2 Frame_Shift_Del p.H196Mfs*148 0.79 TCGA-HT-8564-01 17 72353024 72353024 G A BTBD17 Silent p.D403D 0.75 TCGA-HT-8564-01 17 72353354 72353354 G A BTBD17 Silent p.H293H 0.80 TCGA-HT-8564-01 17 74289330 74289330 C T QRICH2 Missense_Mutation p.R327H 0.74 tolerated(0.82) benign(0.002) TCGA-HT-8564-01 17 74878237 74878237 G - MGAT5B Frame_Shift_Del p.G75Afs*11 0.10 TCGA-HT-8564-01 17 7577138 7577138 C T TP53 Missense_Mutation p.R267Q 0.75 deleterious(0.01) probably_damaging(0.989) TCGA-HT-8564-01 17 7578463 7578463 C T TP53 Missense_Mutation p.R156H 0.75 tolerated(0.54) probably_damaging(0.979) TCGA-HT-8564-01 17 76558007 76558007 G A DNAH17 Missense_Mutation p.A542V 0.86 benign(0.002) TCGA-HT-8564-01 17 79256073 79256073 C T SLC38A10 Silent p.P139P 0.14 TCGA-HT-8564-01 17 7984308 7984308 C T AC129492.6 3'UTR 0.71 TCGA-HT-8564-01 17 8167651 8167651 G A PFAS Missense_Mutation p.R638Q 0.82 tolerated(1) benign(0.003) TCGA-HT-8564-01 18 21114452 21114452 G A NPC1 Silent p.R1183R 0.59 TCGA-HT-8564-01 18 29648291 29648291 C T RNF125 Nonsense_Mutation p.R215* 0.52 TCGA-HT-8564-01 18 5423406 5423406 C T EPB41L3 Missense_Mutation p.R437H 0.55 deleterious(0) probably_damaging(0.999) TCGA-HT-8564-01 18 74153957 74153957 C T ZNF516 Missense_Mutation p.A352T 0.64 deleterious(0.03) probably_damaging(0.982) TCGA-HT-8564-01 18 77896426 77896426 A - ADNP2 Frame_Shift_Del p.K1045Nfs*29 0.36 TCGA-HT-8564-01 19 10419252 10419252 G A ZGLP1 Missense_Mutation p.R36C 0.35 tolerated_low_confidence(0.05) benign(0.001) TCGA-HT-8564-01 19 10790547 10790547 C T ILF3 Missense_Mutation p.A268V 0.04 tolerated(0.17) probably_damaging(0.94) TCGA-HT-8564-01 19 11660568 11660568 C T CNN1 Silent p.P284P 0.17 TCGA-HT-8564-01 19 12817117 12817117 C T TNPO2 Missense_Mutation p.D521N 0.22 tolerated(0.27) benign(0.005) TCGA-HT-8564-01 19 15072860 15072860 C T SLC1A6 Missense_Mutation p.D297N 0.42 tolerated(0.56) benign(0.008) TCGA-HT-8564-01 19 15580456 15580456 G A PGLYRP2 Missense_Mutation p.P543L 0.46 deleterious(0.01) probably_damaging(0.985) TCGA-HT-8564-01 19 15918656 15918656 G A OR10H1 Silent p.C64C 0.30 TCGA-HT-8564-01 19 18092920 18092920 G A KCNN1 Missense_Mutation p.V301M 0.62 tolerated(0.14) benign(0.104) TCGA-HT-8564-01 19 1877144 1877144 G A ABHD17A 3'UTR 0.16 TCGA-HT-8564-01 19 1954180 1954180 G A CSNK1G2 Intron 0.33 TCGA-HT-8564-01 19 19625703 19625703 C T TSSK6 Silent p.A178A 0.14 TCGA-HT-8564-01 19 19655182 19655182 G A CILP2 Missense_Mutation p.V610M 0.31 deleterious(0.04) possibly_damaging(0.685) TCGA-HT-8564-01 19 30314758 30314758 G A CCNE1 3'UTR 0.17 TCGA-HT-8564-01 19 35823774 35823774 G T CD22 Missense_Mutation p.R120M 0.20 deleterious(0) probably_damaging(0.998) TCGA-HT-8564-01 19 36216664 36216664 C T KMT2B Missense_Mutation p.P1277L 0.22 possibly_damaging(0.684) TCGA-HT-8564-01 19 36640759 36640759 G A CAPNS1 3'UTR 0.23 TCGA-HT-8564-01 19 38876366 38876366 G A GGN Silent p.S512S 0.51 TCGA-HT-8564-01 19 38974156 38974156 G A RYR1 Missense_Mutation p.R1645Q 0.50 benign(0.106) TCGA-HT-8564-01 19 39299582 39299582 G A LGALS4 Silent p.F47F 0.26 TCGA-HT-8564-01 19 39691350 39691350 G A NCCRP1 Missense_Mutation p.R261Q 0.43 tolerated(0.22) possibly_damaging(0.688) TCGA-HT-8564-01 19 40913824 40913824 G A PRX Missense_Mutation p.R6W 0.27 deleterious(0) unknown(0) TCGA-HT-8564-01 19 42343292 42343292 C T LYPD4 Splice_Site p.X23_splice 0.04 TCGA-HT-8564-01 19 42375460 42375460 G T RPS19 3'UTR 0.26 TCGA-HT-8564-01 19 4290594 4290594 G A SHD Silent p.L329L 0.30 TCGA-HT-8564-01 19 42912409 42912409 G A LIPE Silent p.H495H 0.17 TCGA-HT-8564-01 19 43259265 43259265 C T PSG8 Missense_Mutation p.R288Q 0.19 tolerated(0.45) benign(0.037) TCGA-HT-8564-01 19 45411904 45411904 G A APOE Silent p.A117A 0.19 TCGA-HT-8564-01 19 45885827 45885827 C T PPP1R13L Silent p.A802A 0.23 TCGA-HT-8564-01 19 46522887 46522887 G A PGLYRP1 Silent p.D102D 0.44 TCGA-HT-8564-01 19 48908573 48908573 G A GRIN2D Missense_Mutation p.A350T 0.69 tolerated(0.17) benign(0.019) TCGA-HT-8564-01 19 50265270 50265270 C T TSKS Silent p.T130T 0.07 TCGA-HT-8564-01 19 50912844 50912844 C T POLD1 Missense_Mutation p.A692V 0.05 deleterious(0) probably_damaging(0.994) TCGA-HT-8564-01 19 50926144 50926144 G A SPIB Silent p.P63P 0.26 TCGA-HT-8564-01 19 5244109 5244109 C T PTPRS Missense_Mutation p.R458H 0.17 deleterious(0.01) possibly_damaging(0.745) TCGA-HT-8564-01 19 52569526 52569526 C T ZNF841 Missense_Mutation p.G537R 0.28 deleterious(0.04) probably_damaging(1) TCGA-HT-8564-01 19 5286162 5286162 G A PTPRS 5'UTR 0.40 TCGA-HT-8564-01 19 53793869 53793869 G A BIRC8 5'UTR 0.53 TCGA-HT-8564-01 19 53995728 53995728 G A ZNF813 3'UTR 0.50 TCGA-HT-8564-01 19 55175317 55175317 G A LILRB4 Missense_Mutation p.R59H 0.41 tolerated(0.17) benign(0.006) TCGA-HT-8564-01 19 55451430 55451430 C T NLRP7 Missense_Mutation p.D253N 0.49 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 19 55493635 55493635 A T NLRP2 Missense_Mutation p.K190M 0.24 deleterious(0.04) possibly_damaging(0.461) TCGA-HT-8564-01 19 55494882 55494882 C T NLRP2 Missense_Mutation p.L606F 0.44 tolerated(0.45) benign(0.039) TCGA-HT-8564-01 19 56041301 56041301 C T SBK2 Silent p.A282A 0.42 TCGA-HT-8564-01 19 57176021 57176021 C T ZNF835 Silent p.A182A 0.26 TCGA-HT-8564-01 19 5786850 5786850 C T DUS3L Missense_Mutation p.G466S 0.35 deleterious(0) probably_damaging(0.997) TCGA-HT-8564-01 19 58084870 58084870 C T ZNF416 Silent p.A134A 0.20 TCGA-HT-8564-01 19 58596148 58596148 C T ZSCAN18 Silent p.P535P 0.25 TCGA-HT-8564-01 19 58967425 58967425 G A ZNF324B Missense_Mutation p.A372T 0.05 tolerated(0.52) possibly_damaging(0.477) TCGA-HT-8564-01 19 6190728 6190728 C T ACSBG2 Intron 0.38 TCGA-HT-8564-01 19 6772867 6772867 C G VAV1 Missense_Mutation p.L17V 0.17 deleterious(0) probably_damaging(0.999) TCGA-HT-8564-01 19 746408 746408 C T PALM Missense_Mutation p.A253V 0.34 tolerated(0.17) possibly_damaging(0.49) TCGA-HT-8564-01 19 7594070 7594072 CTT - MCOLN1 In_Frame_Del p.F408del 0.24 TCGA-HT-8564-01 19 7619474 7619474 C T PNPLA6 Silent p.A843A 0.25 TCGA-HT-8564-01 19 8188415 8188415 C T FBN3 Silent p.T1005T 0.52 TCGA-HT-8564-01 19 8201185 8201185 C T FBN3 Missense_Mutation p.E452K 0.26 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 19 8601249 8601249 G A MYO1F Missense_Mutation p.R644W 0.43 tolerated(0.06) possibly_damaging(0.498) TCGA-HT-8564-01 1 100606421 100606421 G A TRMT13 Missense_Mutation p.G172D 0.26 deleterious(0.02) probably_damaging(1) TCGA-HT-8564-01 1 100684291 100684293 TCT - DBT In_Frame_Del p.E148del 0.39 TCGA-HT-8564-01 1 109801232 109801232 C T CELSR2 Silent p.H1163H 0.29 TCGA-HT-8564-01 1 111857960 111857960 G A CHIA Missense_Mutation p.R128H 0.33 deleterious(0.05) benign(0.377) TCGA-HT-8564-01 1 118166435 118166435 C T FAM46C Silent p.N315N 0.41 TCGA-HT-8564-01 1 12726801 12726801 C T AADACL4 3'UTR 0.35 TCGA-HT-8564-01 1 145534934 145534934 C T ITGA10 Nonsense_Mutation p.R613* 0.16 TCGA-HT-8564-01 1 150967084 150967084 G A ANXA9 Missense_Mutation p.R295H 0.37 deleterious(0) probably_damaging(0.994) TCGA-HT-8564-01 1 151105813 151105813 C T SEMA6C Missense_Mutation p.R679H 0.28 tolerated(0.45) possibly_damaging(0.715) TCGA-HT-8564-01 1 151261051 151261051 C T ZNF687 Silent p.S721S 0.31 TCGA-HT-8564-01 1 152282395 152282395 C T FLG Missense_Mutation p.R1656H 0.34 possibly_damaging(0.522) TCGA-HT-8564-01 1 152800020 152800020 C - LCE1A Frame_Shift_Del p.T26Lfs*44 0.21 TCGA-HT-8564-01 1 153276410 153276410 G A PGLYRP3 Missense_Mutation p.S151L 0.49 deleterious(0.04) probably_damaging(0.993) TCGA-HT-8564-01 1 155258080 155258081 CT - HCN3 Frame_Shift_Del p.L719Afs*13 0.21 TCGA-HT-8564-01 1 156702140 156702140 C T RRNAD1 Missense_Mutation p.R102W 0.33 deleterious(0) probably_damaging(0.996) TCGA-HT-8564-01 1 157895827 157895827 G A RP11-451O13.1 RNA 0.38 TCGA-HT-8564-01 1 15874846 15874846 C T DNAJC16 Missense_Mutation p.R316W 0.44 deleterious(0) benign(0.3) TCGA-HT-8564-01 1 159802792 159802792 G A SLAMF8 Missense_Mutation p.R165Q 0.15 tolerated(0.35) benign(0.022) TCGA-HT-8564-01 1 16202978 16202978 G A SPEN Missense_Mutation p.R229Q 0.32 probably_damaging(0.99) TCGA-HT-8564-01 1 169364358 169364358 C T CCDC181 Missense_Mutation p.R485H 0.41 tolerated(0.09) benign(0.013) TCGA-HT-8564-01 1 16957459 16957459 G A CROCCP2 RNA 0.40 TCGA-HT-8564-01 1 172062857 172062857 A C DNM3 Intron 0.05 TCGA-HT-8564-01 1 173551052 173551052 C T SLC9C2 Missense_Mutation p.V246I 0.46 tolerated(0.63) benign(0.005) TCGA-HT-8564-01 1 173826739 173826739 G A DARS2 Missense_Mutation p.D612N 0.20 deleterious(0) probably_damaging(0.992) TCGA-HT-8564-01 1 173886455 173886455 G A SERPINC1 5'UTR 0.31 TCGA-HT-8564-01 1 175097740 175097740 G A TNN Missense_Mutation p.R1063H 0.21 tolerated(0.1) possibly_damaging(0.724) TCGA-HT-8564-01 1 179310292 179310292 C G SOAT1 Silent p.G209G 0.34 TCGA-HT-8564-01 1 186645692 186645692 G A PTGS2 Missense_Mutation p.R293W 0.42 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 1 19501461 19501461 C T UBR4 Missense_Mutation p.R947Q 0.32 benign(0.021) TCGA-HT-8564-01 1 198671623 198671623 C T PTPRC Missense_Mutation p.R183C 0.33 tolerated(0.1) benign(0.025) TCGA-HT-8564-01 1 201184276 201184276 G A IGFN1 Missense_Mutation p.V2997I 0.39 possibly_damaging(0.766) TCGA-HT-8564-01 1 201757608 201757608 C T NAV1 Missense_Mutation p.A1003V 0.05 tolerated(0.37) benign(0.082) TCGA-HT-8564-01 1 201982319 201982319 G A ELF3 Missense_Mutation p.R233H 0.42 tolerated(0.25) benign(0.004) TCGA-HT-8564-01 1 202914187 202914187 C T ADIPOR1 Missense_Mutation p.V181M 0.39 deleterious(0.05) benign(0.142) TCGA-HT-8564-01 1 203311549 203311549 G A FMOD Silent p.D351D 0.37 TCGA-HT-8564-01 1 205138721 205138721 G A DSTYK Silent p.S298S 0.17 TCGA-HT-8564-01 1 205499346 205499346 C - CDK18 Intron 0.37 TCGA-HT-8564-01 1 205740772 205740772 C T RAB7L1 Missense_Mutation p.R69H 0.39 deleterious(0) probably_damaging(0.998) TCGA-HT-8564-01 1 207793265 207793265 G A CR1 Silent p.S2369S 0.29 TCGA-HT-8564-01 1 207793369 207793369 C T CR1 Missense_Mutation p.A2404V 0.42 tolerated(0.29) benign(0.052) TCGA-HT-8564-01 1 220791991 220791991 G A MARK1 Missense_Mutation p.R268Q 0.30 deleterious(0) probably_damaging(0.965) TCGA-HT-8564-01 1 22166340 22166340 C T HSPG2 Silent p.T3228T 0.44 TCGA-HT-8564-01 1 22168798 22168798 C T HSPG2 Missense_Mutation p.G2996S 0.15 benign(0.084) TCGA-HT-8564-01 1 223176292 223176293 TG - DISP1 Frame_Shift_Del p.V520Lfs*53 0.19 TCGA-HT-8564-01 1 227261695 227261695 G A CDC42BPA Missense_Mutation p.R869C 0.03 deleterious(0) probably_damaging(0.988) TCGA-HT-8564-01 1 228362946 228362946 G A IBA57 Missense_Mutation p.R268H 0.12 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 1 228471282 228471282 C T OBSCN Missense_Mutation p.T3368M 0.36 probably_damaging(1) TCGA-HT-8564-01 1 228595884 228595884 G A TRIM17 3'UTR 0.13 TCGA-HT-8564-01 1 232574983 232574983 G A SIPA1L2 Missense_Mutation p.A1301V 0.07 tolerated(0.3) benign(0.027) TCGA-HT-8564-01 1 233497841 233497841 C G MLK4 Missense_Mutation p.Q452E 0.06 tolerated(0.51) possibly_damaging(0.805) TCGA-HT-8564-01 1 23405541 23405541 C T KDM1A Silent p.C642C 0.16 TCGA-HT-8564-01 1 23519885 23519885 G A HTR1D Silent p.H276H 0.44 TCGA-HT-8564-01 1 236646714 236646714 G A EDARADD 3'Flank 0.35 TCGA-HT-8564-01 1 24483599 24483599 G A IFNLR1 3'UTR 0.04 TCGA-HT-8564-01 1 245848743 245848743 G A KIF26B Missense_Mutation p.E820K 0.34 deleterious(0) unknown(0) TCGA-HT-8564-01 1 247021040 247021040 C T AHCTF1 Silent p.P1412P 0.05 TCGA-HT-8564-01 1 248616513 248616513 C T OR2T2 Missense_Mutation p.R139C 0.14 tolerated(0.1) benign(0.003) TCGA-HT-8564-01 1 25167273 25167273 A - CLIC4 Frame_Shift_Del p.K204Nfs*11 0.31 TCGA-HT-8564-01 1 2541236 2541236 C T MMEL1 Silent p.T109T 0.36 TCGA-HT-8564-01 1 26349416 26349416 C T EXTL1 Silent p.G93G 0.17 TCGA-HT-8564-01 1 26387782 26387782 C T TRIM63 Missense_Mutation p.E126K 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-HT-8564-01 1 26650748 26650748 C T AIM1L Silent p.V670V 0.05 TCGA-HT-8564-01 1 33837953 33837953 G A PHC2 Silent p.T90T 0.41 TCGA-HT-8564-01 1 34180250 34180250 C T CSMD2 Missense_Mutation p.A1075T 0.36 tolerated(0.44) benign(0.065) TCGA-HT-8564-01 1 36807295 36807295 C T STK40 3'UTR 0.21 TCGA-HT-8564-01 1 3800377 3800377 T - DFFB 3'UTR 0.26 TCGA-HT-8564-01 1 43317024 43317024 G A ZNF691 Missense_Mutation p.R163Q 0.38 deleterious(0.01) probably_damaging(0.921) TCGA-HT-8564-01 1 43779639 43779639 G A TIE1 Silent p.S803S 0.36 TCGA-HT-8564-01 1 44056971 44056971 C T PTPRF Silent p.S426S 0.50 TCGA-HT-8564-01 1 45110396 45110397 AA - RNF220 Frame_Shift_Del p.K385Rfs*6 0.26 TCGA-HT-8564-01 1 53925205 53925205 G A DMRTB1 Missense_Mutation p.A27T 0.32 deleterious(0.03) possibly_damaging(0.477) TCGA-HT-8564-01 1 55050400 55050400 G A ACOT11 Missense_Mutation p.A36T 0.04 tolerated_low_confidence(0.06) benign(0.006) TCGA-HT-8564-01 1 55337128 55337128 G A DHCR24 Silent p.H257H 0.07 TCGA-HT-8564-01 1 6202326 6202326 G A CHD5 Silent p.R766R 0.39 TCGA-HT-8564-01 1 6285295 6285295 C T ICMT Missense_Mutation p.V234I 0.34 tolerated(0.41) benign(0.024) TCGA-HT-8564-01 1 6647351 6647354 AGTA - ZBTB48 Splice_Site p.X408_splice 0.27 TCGA-HT-8564-01 1 6697342 6697342 G A DNAJC11 Silent p.S480S 0.32 TCGA-HT-8564-01 1 78280851 78280851 G A FAM73A Missense_Mutation p.R277H 0.13 tolerated(0.87) benign(0.153) TCGA-HT-8564-01 1 85331490 85331490 C T LPAR3 Missense_Mutation p.R105H 0.41 deleterious(0.01) probably_damaging(1) TCGA-HT-8564-01 1 8674675 8674675 G A RERE Missense_Mutation p.P156L 0.21 benign(0.036) TCGA-HT-8564-01 1 89449567 89449567 G A RBMXL1 5'UTR 0.33 TCGA-HT-8564-01 1 91382483 91382483 G A ZNF644 Nonsense_Mutation p.R1286* 0.34 TCGA-HT-8564-01 1 94512531 94512531 G A ABCA4 Silent p.Y954Y 0.40 TCGA-HT-8564-01 1 94574157 94574157 G A ABCA4 Missense_Mutation p.R140W 0.04 deleterious(0) probably_damaging(0.972) TCGA-HT-8564-01 1 95492780 95492780 G A ALG14 Missense_Mutation p.R109W 0.35 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 20 17489628 17489628 G A BFSP1 Missense_Mutation p.T214M 0.41 tolerated(0.12) benign(0.273) TCGA-HT-8564-01 20 2820527 2820527 C T PCED1A Missense_Mutation p.R11H 0.44 tolerated_low_confidence(0.21) benign(0.002) TCGA-HT-8564-01 20 30789887 30789887 C T PLAGL2 Missense_Mutation p.R32Q 0.21 tolerated(0.18) benign(0.029) TCGA-HT-8564-01 20 31368261 31368261 G A DNMT3B Silent p.P44P 0.25 TCGA-HT-8564-01 20 31671678 31671678 G A BPIFB4 Silent p.T225T 0.45 TCGA-HT-8564-01 20 33122560 33122560 C T DYNLRB1 Nonsense_Mutation p.R70* 0.43 TCGA-HT-8564-01 20 37659354 37659354 C T DHX35 Missense_Mutation p.R631C 0.27 deleterious(0.03) probably_damaging(0.913) TCGA-HT-8564-01 20 3845039 3845041 CTC - MAVS In_Frame_Del p.S258del 0.38 TCGA-HT-8564-01 20 42354972 42354972 A - GTSF1L Frame_Shift_Del p.P122Lfs*50 0.15 TCGA-HT-8564-01 20 44838993 44838993 G A CDH22 Silent p.V413V 0.60 TCGA-HT-8564-01 20 45217829 45217829 C T SLC13A3 Missense_Mutation p.R329Q 0.16 tolerated(0.69) benign(0.009) TCGA-HT-8564-01 20 4705765 4705765 G A PRND 3'UTR 0.58 TCGA-HT-8564-01 20 47266679 47266679 C T PREX1 Silent p.P961P 0.32 TCGA-HT-8564-01 20 60503309 60503309 C T CDH4 Silent p.N611N 0.18 TCGA-HT-8564-01 20 60504690 60504690 C T CDH4 Missense_Mutation p.R677C 0.25 deleterious(0) possibly_damaging(0.462) TCGA-HT-8564-01 20 60574065 60574065 G A TAF4 Missense_Mutation p.R963W 0.38 probably_damaging(0.997) TCGA-HT-8564-01 20 60905854 60905854 C T LAMA5 Missense_Mutation p.R1266Q 0.27 possibly_damaging(0.892) TCGA-HT-8564-01 20 60963308 60963308 C T RPS21 Intron 0.14 TCGA-HT-8564-01 20 61288352 61288352 G A SLCO4A1 Silent p.T182T 0.12 TCGA-HT-8564-01 20 62195519 62195519 C T HELZ2 Silent p.L1552L 0.26 TCGA-HT-8564-01 20 62328415 62328417 GAG - TNFRSF6B In_Frame_Del p.E101del 0.19 TCGA-HT-8564-01 20 62493215 62493215 C T ABHD16B Missense_Mutation p.R108C 0.54 deleterious(0.03) probably_damaging(1) TCGA-HT-8564-01 21 34923567 34923567 C T SON Missense_Mutation p.S677L 0.21 benign(0.32) TCGA-HT-8564-01 21 43230535 43230535 C T PRDM15 Missense_Mutation p.R1242Q 0.53 tolerated(0.08) probably_damaging(0.979) TCGA-HT-8564-01 21 45651221 45651221 G A ICOSLG Silent p.V268V 0.43 TCGA-HT-8564-01 21 46951531 46951531 C T SLC19A1 Missense_Mutation p.A241T 0.52 tolerated(0.38) benign(0.008) TCGA-HT-8564-01 21 46951822 46951822 C T SLC19A1 Missense_Mutation p.V144M 0.36 deleterious(0) probably_damaging(0.999) TCGA-HT-8564-01 21 47423450 47423450 C T COL6A1 Silent p.D870D 0.24 TCGA-HT-8564-01 21 47954526 47954527 - G DIP2A Frame_Shift_Ins p.V525Gfs*25 0.39 TCGA-HT-8564-01 22 17589817 17589817 G A IL17RA Missense_Mutation p.A570T 0.16 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 22 18387494 18387494 C T MICAL3 Missense_Mutation p.V126I 0.12 probably_damaging(0.997) TCGA-HT-8564-01 22 19960526 19960526 G A ARVCF Silent p.H824H 0.23 TCGA-HT-8564-01 22 21082106 21082106 G A PI4KA Missense_Mutation p.R1577W 0.38 deleterious(0) probably_damaging(0.993) TCGA-HT-8564-01 22 22048118 22048118 C T PPIL2 Missense_Mutation p.R385C 0.43 deleterious(0) probably_damaging(0.983) TCGA-HT-8564-01 22 24479228 24479228 G A CABIN1 Silent p.T932T 0.43 TCGA-HT-8564-01 22 24581087 24581087 G A SUSD2 Missense_Mutation p.D270N 0.34 tolerated(0.09) possibly_damaging(0.579) TCGA-HT-8564-01 22 26118335 26118335 C T ADRBK2 Missense_Mutation p.P662L 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.823) TCGA-HT-8564-01 22 26164580 26164580 A G MYO18B Missense_Mutation p.K233E 0.20 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-HT-8564-01 22 31522443 31522443 C T INPP5J Silent p.D83D 0.37 TCGA-HT-8564-01 22 31976293 31976293 C A SFI1 Silent p.T397T 0.06 TCGA-HT-8564-01 22 32000374 32000374 C T SFI1 Missense_Mutation p.A654V 0.30 tolerated(0.58) benign(0.089) TCGA-HT-8564-01 22 32352168 32352170 CTC - YWHAH In_Frame_Del p.L45del 0.19 TCGA-HT-8564-01 22 36122590 36122590 G A APOL5 Missense_Mutation p.A159T 0.04 deleterious(0) possibly_damaging(0.684) TCGA-HT-8564-01 22 37333546 37333546 C - CSF2RB Frame_Shift_Del p.S568Afs*130 0.17 TCGA-HT-8564-01 22 37770333 37770333 G A ELFN2 Silent p.A414A 0.32 TCGA-HT-8564-01 22 37882079 37882079 G A MFNG Missense_Mutation p.P46L 0.15 tolerated(0.08) benign(0.002) TCGA-HT-8564-01 22 38051660 38051660 G A SH3BP1 Missense_Mutation p.R692H 0.50 deleterious_low_confidence(0.01) unknown(0) TCGA-HT-8564-01 22 40043868 40043868 G A CACNA1I Missense_Mutation p.G502R 0.31 tolerated(0.21) unknown(0) TCGA-HT-8564-01 22 40803287 40803287 C T SGSM3 Silent p.R441R 0.33 TCGA-HT-8564-01 22 41620136 41620136 G A L3MBTL2 Missense_Mutation p.R352H 0.34 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 22 41856198 41856198 G A PHF5A 3'UTR 0.28 TCGA-HT-8564-01 22 45914668 45914668 G A FBLN1 Splice_Site p.X62_splice 0.50 TCGA-HT-8564-01 22 46776725 46776725 G A CELSR1 Nonsense_Mutation p.R2406* 0.17 TCGA-HT-8564-01 22 46806347 46806347 G A CELSR1 Silent p.D1627D 0.35 TCGA-HT-8564-01 22 50882544 50882544 C T PPP6R2 Silent p.D917D 0.29 TCGA-HT-8564-01 22 50967656 50967656 C T TYMP Missense_Mutation p.R109H 0.30 tolerated(0.7) benign(0) TCGA-HT-8564-01 2 100022891 100022891 C T REV1 Missense_Mutation p.R837H 0.34 tolerated(0.51) benign(0.001) TCGA-HT-8564-01 2 103013337 103013337 C T IL18R1 Silent p.S539S 0.32 TCGA-HT-8564-01 2 109383056 109383056 G A RANBP2 Missense_Mutation p.E2021K 0.46 deleterious(0) probably_damaging(0.973) TCGA-HT-8564-01 2 113082581 113082583 TGT - ZC3H6 In_Frame_Del p.V633del 0.24 TCGA-HT-8564-01 2 113322007 113322007 C T POLR1B Silent p.D559D 0.35 TCGA-HT-8564-01 2 120439264 120439264 G A TMEM177 Missense_Mutation p.V279I 0.51 tolerated(0.53) benign(0.001) TCGA-HT-8564-01 2 130872806 130872806 T - POTEF Frame_Shift_Del p.K206Rfs*5 0.18 TCGA-HT-8564-01 2 132021077 132021078 - A POTEE Frame_Shift_Ins p.N687Efs*2 0.35 TCGA-HT-8564-01 2 136481617 136481617 C T R3HDM1 Missense_Mutation p.R1019W 0.53 deleterious(0) possibly_damaging(0.855) TCGA-HT-8564-01 2 141816539 141816539 G A LRP1B Nonsense_Mutation p.R441* 0.07 TCGA-HT-8564-01 2 1684083 1684083 C T PXDN Silent p.A204A 0.49 TCGA-HT-8564-01 2 170022532 170022532 G A LRP2 Missense_Mutation p.R3890W 0.45 probably_damaging(0.997) TCGA-HT-8564-01 2 170060607 170060607 G A LRP2 Silent p.T2630T 0.19 TCGA-HT-8564-01 2 170502600 170502603 TTCT - CCDC173 Frame_Shift_Del p.K469Nfs*9 0.10 TCGA-HT-8564-01 2 179412628 179412628 C T TTN Missense_Mutation p.R31242H 0.34 TCGA-HT-8564-01 2 179430304 179430304 C T TTN Missense_Mutation p.R26852H 0.26 TCGA-HT-8564-01 2 179598102 179598102 T - TTN Frame_Shift_Del p.K5306Nfs*4 0.37 TCGA-HT-8564-01 2 179604439 179604439 C A TTN Missense_Mutation p.M4507I 0.13 TCGA-HT-8564-01 2 197183524 197183524 G A HECW2 Missense_Mutation p.S697L 0.05 tolerated_low_confidence(0.12) benign(0.006) TCGA-HT-8564-01 2 201683504 201683504 G A BZW1 Missense_Mutation p.M314I 0.37 tolerated(0.1) benign(0.039) TCGA-HT-8564-01 2 204599561 204599561 C T CD28 Missense_Mutation p.R197C 0.32 deleterious(0) probably_damaging(0.937) TCGA-HT-8564-01 2 215809802 215809802 C T ABCA12 Silent p.P2422P 0.48 TCGA-HT-8564-01 2 216209588 216209588 C T ATIC Silent p.N438N 0.31 TCGA-HT-8564-01 2 220334066 220334066 G A SPEG Missense_Mutation p.R1227H 0.49 probably_damaging(0.996) TCGA-HT-8564-01 2 228475955 228475955 A G C2orf83 3'UTR 0.15 TCGA-HT-8564-01 2 228678691 228678691 G A CCL20 Missense_Mutation p.G22S 0.09 tolerated(1) benign(0.001) TCGA-HT-8564-01 2 231973400 231973401 TT - HTR2B Frame_Shift_Del p.K426Vfs*12 0.25 TCGA-HT-8564-01 2 231973425 231973425 G A HTR2B Missense_Mutation p.R418W 0.30 deleterious_low_confidence(0) possibly_damaging(0.591) TCGA-HT-8564-01 2 233128091 233128091 G A DIS3L2 Missense_Mutation p.G534R 0.11 tolerated(0.81) benign(0.002) TCGA-HT-8564-01 2 233405401 233405401 G A CHRNG Silent p.P110P 0.63 TCGA-HT-8564-01 2 234371341 234371341 G A DGKD Missense_Mutation p.R1049H 0.14 tolerated(0.36) benign(0) TCGA-HT-8564-01 2 234526381 234526381 A G UGT1A8 Missense_Mutation p.I10V 0.46 tolerated(0.58) benign(0) TCGA-HT-8564-01 2 234652392 234652392 C T UGT1A10 Intron 0.11 TCGA-HT-8564-01 2 239975226 239975226 C T HDAC4 Missense_Mutation p.E1049K 0.45 deleterious(0.01) benign(0.056) TCGA-HT-8564-01 2 241468876 241468876 G A ANKMY1 Silent p.P88P 0.34 TCGA-HT-8564-01 2 241570136 241570136 G A GPR35 Missense_Mutation p.R287H 0.45 tolerated(0.54) benign(0.055) TCGA-HT-8564-01 2 241680733 241680733 G A KIF1A Silent p.Y1234Y 0.41 TCGA-HT-8564-01 2 242148714 242148714 C T ANO7 Silent p.F418F 0.25 TCGA-HT-8564-01 2 242169651 242169651 C A HDLBP Missense_Mutation p.D1170Y 0.05 deleterious(0) probably_damaging(0.918) TCGA-HT-8564-01 2 242437037 242437037 G A STK25 Silent p.F366F 0.50 TCGA-HT-8564-01 2 242815361 242815361 G A CXXC11 Missense_Mutation p.V552M 0.32 tolerated(0.09) possibly_damaging(0.461) TCGA-HT-8564-01 2 24344101 24344103 CTT - PFN4 In_Frame_Del p.E62del 0.53 TCGA-HT-8564-01 2 25464537 25464537 C T DNMT3A Missense_Mutation p.R659H 0.51 deleterious(0.02) probably_damaging(0.937) TCGA-HT-8564-01 2 26414365 26414365 C T HADHA Silent p.P711P 0.51 TCGA-HT-8564-01 2 26700618 26700618 C T OTOF Splice_Site p.X739_splice 0.34 TCGA-HT-8564-01 2 27529116 27529116 G A TRIM54 Missense_Mutation p.R343Q 0.31 deleterious(0.03) benign(0.092) TCGA-HT-8564-01 2 28785936 28785936 C T PLB1 Silent p.N392N 0.18 TCGA-HT-8564-01 2 29240816 29240816 G A FAM179A Missense_Mutation p.A452T 0.31 deleterious(0.02) possibly_damaging(0.755) TCGA-HT-8564-01 2 45812861 45812861 C T SRBD1 Missense_Mutation p.R234H 0.28 deleterious(0.04) benign(0.013) TCGA-HT-8564-01 2 46574124 46574124 G A EPAS1 Missense_Mutation p.V47M 0.06 deleterious(0) probably_damaging(0.933) TCGA-HT-8564-01 2 56216156 56216157 CA - MIR216A RNA 0.27 TCGA-HT-8564-01 2 64199337 64199339 AGG - VPS54 In_Frame_Del p.P140del 0.30 TCGA-HT-8564-01 2 69098500 69098500 C T BMP10 5'UTR 0.27 TCGA-HT-8564-01 2 71043766 71043766 G A CLEC4F Silent p.N249N 0.24 TCGA-HT-8564-01 2 71753455 71753455 C T DYSF Missense_Mutation p.R419W 0.25 deleterious(0) probably_damaging(0.996) TCGA-HT-8564-01 2 72359683 72359683 G A CYP26B1 Silent p.P404P 0.38 TCGA-HT-8564-01 2 73717091 73717091 C T ALMS1 Nonsense_Mutation p.R2668* 0.35 TCGA-HT-8564-01 2 74595114 74595114 G A DCTN1 Silent p.L667L 0.21 TCGA-HT-8564-01 2 74742798 74742798 C A TLX2 Missense_Mutation p.H147N 0.23 deleterious(0) benign(0.082) TCGA-HT-8564-01 2 75107689 75107689 C T HK2 Silent p.D521D 0.24 TCGA-HT-8564-01 2 85531438 85531438 C T TCF7L1 Silent p.L274L 0.49 TCGA-HT-8564-01 2 88387390 88387390 G A SMYD1 Silent p.A108A 0.41 TCGA-HT-8564-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.22 TCGA-HT-8564-01 3 112005610 112005610 A - SLC9C1 Frame_Shift_Del p.F10Sfs*11 0.26 TCGA-HT-8564-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.50 TCGA-HT-8564-01 3 123036943 123036943 G A ADCY5 Nonsense_Mutation p.R760* 0.76 TCGA-HT-8564-01 3 132361582 132361582 A G ACAD11 Missense_Mutation p.I105T 0.77 deleterious(0) benign(0.155) TCGA-HT-8564-01 3 132403500 132403502 TTC - NPHP3 In_Frame_Del p.E1156del 0.74 TCGA-HT-8564-01 3 141163946 141163946 G A ZBTB38 Missense_Mutation p.A906T 0.72 tolerated(0.4) benign(0.27) TCGA-HT-8564-01 3 141164403 141164403 G A ZBTB38 Missense_Mutation p.R1058H 0.68 deleterious(0.01) probably_damaging(1) TCGA-HT-8564-01 3 15065637 15065637 T A NR2C2 Silent p.L259L 0.24 TCGA-HT-8564-01 3 151461914 151461914 C T AADACL2 Missense_Mutation p.T132M 0.75 tolerated(0.27) possibly_damaging(0.852) TCGA-HT-8564-01 3 182740306 182740306 A G MCCC1 Missense_Mutation p.Y590H 0.20 tolerated(0.55) benign(0.001) TCGA-HT-8564-01 3 36779958 36779958 C T DCLK3 Missense_Mutation p.E65K 0.79 deleterious(0.01) benign(0.091) TCGA-HT-8564-01 3 37038172 37038172 A C MLH1 Missense_Mutation p.Q60P 0.82 deleterious(0) probably_damaging(0.996) TCGA-HT-8564-01 3 46759103 46759103 G A PRSS50 Missense_Mutation p.P44L 0.74 tolerated(0.17) benign(0.044) TCGA-HT-8564-01 3 48422276 48422276 G A FBXW12 Missense_Mutation p.A287T 0.75 deleterious(0.01) probably_damaging(0.959) TCGA-HT-8564-01 3 49699985 49699985 C T BSN Silent p.S3569S 0.73 TCGA-HT-8564-01 3 50224060 50224060 G A SEMA3F Missense_Mutation p.V610M 0.25 tolerated(0.12) benign(0.27) TCGA-HT-8564-01 3 50326252 50326252 G A IFRD2 Silent p.R398R 0.74 TCGA-HT-8564-01 3 52380763 52380763 C T DNAH1 Silent p.D644D 0.75 TCGA-HT-8564-01 3 52407044 52407044 C T DNAH1 Silent p.G2320G 0.18 TCGA-HT-8564-01 3 58108831 58108831 C T FLNB Silent p.H1046H 0.18 TCGA-HT-8564-01 3 58552905 58552905 C T FAM107A Intron 0.17 TCGA-HT-8564-01 3 64536656 64536656 C T ADAMTS9 Missense_Mutation p.R1594H 0.70 tolerated(0.64) benign(0) TCGA-HT-8564-01 4 110915913 110915913 G T EGF Missense_Mutation p.R961M 0.18 tolerated(0.14) benign(0.011) TCGA-HT-8564-01 4 122835949 122835949 C T TRPC3 Missense_Mutation p.A443T 0.37 tolerated(0.21) benign(0.042) TCGA-HT-8564-01 4 128651877 128651877 C T SLC25A31 Silent p.P59P 0.42 TCGA-HT-8564-01 4 151829999 151829999 T G LRBA Missense_Mutation p.K391T 0.22 deleterious(0) probably_damaging(0.997) TCGA-HT-8564-01 4 151850067 151850067 G A LRBA Missense_Mutation p.R123W 0.18 deleterious(0) probably_damaging(0.997) TCGA-HT-8564-01 4 153692224 153692224 G A TIGD4 5'UTR 0.24 TCGA-HT-8564-01 4 154709690 154709690 C T SFRP2 Missense_Mutation p.A100T 0.15 deleterious(0) probably_damaging(0.997) TCGA-HT-8564-01 4 155490927 155490927 C T FGB Missense_Mutation p.T407M 0.37 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 4 155670300 155670300 C T LRAT 3'UTR 0.15 TCGA-HT-8564-01 4 166795046 166795046 G - TLL1 5'UTR 0.17 TCGA-HT-8564-01 4 185724474 185724474 C A ACSL1 Silent p.A65A 0.41 TCGA-HT-8564-01 4 20715162 20715162 C T PACRGL Silent p.S203S 0.38 TCGA-HT-8564-01 4 2306942 2306942 C T ZFYVE28 Silent p.A375A 0.36 TCGA-HT-8564-01 4 2943380 2943380 C T NOP14 Missense_Mutation p.A710T 0.38 tolerated(0.35) benign(0.015) TCGA-HT-8564-01 4 3037185 3037185 G A GRK4 Missense_Mutation p.V448M 0.34 deleterious(0.01) possibly_damaging(0.863) TCGA-HT-8564-01 4 38990512 38990512 C T TMEM156 Missense_Mutation p.R233H 0.35 tolerated(1) benign(0) TCGA-HT-8564-01 4 4864532 4864532 C T MSX1 Missense_Mutation p.R192C 0.06 deleterious(0) probably_damaging(0.995) TCGA-HT-8564-01 4 5418644 5418644 G A STK32B Missense_Mutation p.G182D 0.09 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 4 6588894 6588894 G A MAN2B2 Missense_Mutation p.R188Q 0.34 tolerated(1) benign(0.002) TCGA-HT-8564-01 4 68447189 68447189 C T STAP1 Missense_Mutation p.A177V 0.31 tolerated(0.3) benign(0.002) TCGA-HT-8564-01 4 70079942 70079942 G A UGT2B11 Missense_Mutation p.R167W 0.36 deleterious(0) benign(0.073) TCGA-HT-8564-01 4 77662039 77662039 C T SHROOM3 Missense_Mutation p.R905W 0.34 deleterious(0) benign(0.417) TCGA-HT-8564-01 4 82026998 82026998 G A PRKG2 Nonsense_Mutation p.R678* 0.19 TCGA-HT-8564-01 4 8293224 8293224 G A HTRA3 Missense_Mutation p.R279Q 0.49 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 4 960969 960969 G A DGKQ Missense_Mutation p.R390W 0.14 deleterious(0) probably_damaging(0.991) TCGA-HT-8564-01 4 9783925 9783925 C T DRD5 Missense_Mutation p.A91V 0.17 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 5 102537324 102537324 A - PPIP5K2 Frame_Shift_Del p.K1221Rfs*31 0.30 TCGA-HT-8564-01 5 112363035 112363037 CTC - MCC In_Frame_Del p.E1008del 0.47 TCGA-HT-8564-01 5 131528557 131528557 C T P4HA2 3'UTR 0.27 TCGA-HT-8564-01 5 132051569 132051569 G A KIF3A Missense_Mutation p.R337W 0.23 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 5 137721747 137721749 AAG - KDM3B In_Frame_Del p.K275del 0.31 TCGA-HT-8564-01 5 139189297 139189298 AA - PSD2 Frame_Shift_Del p.E91Gfs*28 0.29 TCGA-HT-8564-01 5 140021557 140021557 G A TMCO6 Silent p.E139E 0.17 TCGA-HT-8564-01 5 140209817 140209817 C T PCDHA6 Missense_Mutation p.T714M 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.466) TCGA-HT-8564-01 5 140255597 140255601 TAAAA - PCDHA12 Frame_Shift_Del p.I182Nfs*5 0.24 TCGA-HT-8564-01 5 140769478 140769478 G A PCDHGB4 Missense_Mutation p.R676H 0.05 tolerated(0.5) benign(0.002) TCGA-HT-8564-01 5 141035270 141035270 C T ARAP3 Missense_Mutation p.R1343H 0.37 deleterious(0.04) benign(0.006) TCGA-HT-8564-01 5 150029450 150029450 G A SYNPO Missense_Mutation p.R782Q 0.21 tolerated(0.06) probably_damaging(0.921) TCGA-HT-8564-01 5 150856223 150856223 G A SLC36A1 Missense_Mutation p.V299I 0.40 tolerated(0.26) benign(0.048) TCGA-HT-8564-01 5 167689238 167689238 C T TENM2 Missense_Mutation p.T2583M 0.27 deleterious(0) probably_damaging(0.97) TCGA-HT-8564-01 5 175815916 175815917 AG - HIGD2A Frame_Shift_Del p.S34Ffs*106 0.33 TCGA-HT-8564-01 5 176025905 176025905 C A GPRIN1 Nonsense_Mutation p.G311* 0.35 TCGA-HT-8564-01 5 176056600 176056600 G A SNCB Missense_Mutation p.A19V 0.18 tolerated(0.18) possibly_damaging(0.904) TCGA-HT-8564-01 5 178566910 178566910 G A ADAMTS2 Missense_Mutation p.R586C 0.42 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 5 179043155 179043155 G A HNRNPH1 Silent p.Y424Y 0.13 TCGA-HT-8564-01 5 179676062 179676062 G A MAPK9 Missense_Mutation p.A176V 0.44 tolerated(0.08) benign(0.104) TCGA-HT-8564-01 5 180046723 180046723 G A FLT4 Silent p.S863S 0.33 TCGA-HT-8564-01 5 24491704 24491706 GAG - CDH10 In_Frame_Del p.L619del 0.45 TCGA-HT-8564-01 5 32739001 32739001 C T NPR3 Silent p.H308H 0.34 TCGA-HT-8564-01 5 34998924 34998924 C T AGXT2 Missense_Mutation p.R482H 0.42 deleterious(0) probably_damaging(0.996) TCGA-HT-8564-01 5 40854138 40854138 G C CARD6 Missense_Mutation p.A902P 0.38 deleterious(0.01) possibly_damaging(0.883) TCGA-HT-8564-01 5 41159281 41159281 G A C6 Nonsense_Mutation p.R587* 0.40 TCGA-HT-8564-01 5 43246078 43246078 G - NIM1K Frame_Shift_Del p.K69Nfs*3 0.33 TCGA-HT-8564-01 5 56231270 56231270 C T MIER3 Missense_Mutation p.D194N 0.17 tolerated(0.29) benign(0.001) TCGA-HT-8564-01 5 64814369 64814369 C T CENPK Missense_Mutation p.R248H 0.30 deleterious(0) probably_damaging(0.985) TCGA-HT-8564-01 5 65371013 65371014 - C ERBB2IP Frame_Shift_Ins p.H1315Pfs*5 0.14 TCGA-HT-8564-01 5 68413208 68413208 G A SLC30A5 Missense_Mutation p.R475Q 0.41 deleterious(0.02) probably_damaging(0.952) TCGA-HT-8564-01 5 68716104 68716104 G A MARVELD2 Missense_Mutation p.V298I 0.33 tolerated(0.32) benign(0.027) TCGA-HT-8564-01 5 76649192 76649192 G A PDE8B Silent p.S376S 0.35 TCGA-HT-8564-01 5 80604490 80604490 C T ZCCHC9 Silent p.H165H 0.40 TCGA-HT-8564-01 6 10398523 10398523 G A TFAP2A 3'UTR 0.61 TCGA-HT-8564-01 6 10725225 10725225 G A TMEM14C Missense_Mutation p.A18T 0.24 tolerated(0.07) possibly_damaging(0.678) TCGA-HT-8564-01 6 143793364 143793364 G A PEX3 Missense_Mutation p.V216I 0.68 tolerated(0.23) benign(0.056) TCGA-HT-8564-01 6 15520516 15520516 T A JARID2 3'UTR 0.21 TCGA-HT-8564-01 6 160176453 160176453 C T WTAP Missense_Mutation p.A334V 0.35 tolerated_low_confidence(0.33) benign(0.003) TCGA-HT-8564-01 6 160888579 160888579 G A LPAL2 RNA 0.62 TCGA-HT-8564-01 6 170626760 170626760 G T FAM120B Missense_Mutation p.E94D 0.07 deleterious(0) probably_damaging(0.999) TCGA-HT-8564-01 6 30552327 30552327 C T ABCF1 Missense_Mutation p.R459C 0.50 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 6 348938 348938 C T DUSP22 Intron 0.48 TCGA-HT-8564-01 6 36978766 36978766 C T FGD2 Silent p.I106I 0.14 TCGA-HT-8564-01 6 43044258 43044258 C A PTK7 5'Flank 0.69 TCGA-HT-8564-01 6 46656282 46656282 C T TDRD6 Silent p.C139C 0.16 TCGA-HT-8564-01 6 84417562 84417563 - T SNAP91 Frame_Shift_Ins p.A29Sfs*5 0.41 TCGA-HT-8564-01 7 100390125 100390125 C T ZAN Missense_Mutation p.A2603V 0.46 unknown(0) TCGA-HT-8564-01 7 1098177 1098177 C T GPR146 3'UTR 0.39 TCGA-HT-8564-01 7 1132151 1132151 G A GPER1 Missense_Mutation p.A263T 0.34 tolerated(0.13) benign(0.272) TCGA-HT-8564-01 7 115590971 115590971 G A TFEC Nonsense_Mutation p.R158* 0.24 TCGA-HT-8564-01 7 117067538 117067538 G A ASZ1 5'UTR 0.16 TCGA-HT-8564-01 7 121965555 121965555 C G CADPS2 Silent p.L1231L 0.36 TCGA-HT-8564-01 7 128483620 128483620 G A FLNC Missense_Mutation p.A934T 0.35 deleterious(0) possibly_damaging(0.502) TCGA-HT-8564-01 7 129856218 129856218 C T SSMEM1 Nonsense_Mutation p.R215* 0.38 TCGA-HT-8564-01 7 135375977 135375977 C - SLC13A4 Frame_Shift_Del p.G472Efs*25 0.31 TCGA-HT-8564-01 7 141724872 141724872 C T MGAM Missense_Mutation p.A302V 0.32 tolerated(0.9) benign(0.002) TCGA-HT-8564-01 7 142560970 142560970 G A EPHB6 5'UTR 0.17 TCGA-HT-8564-01 7 144096159 144096159 G A NOBOX Silent p.A451A 0.29 TCGA-HT-8564-01 7 147600796 147600796 C T CNTNAP2 Silent p.D746D 0.36 TCGA-HT-8564-01 7 150761737 150761737 G - SLC4A2 Frame_Shift_Del p.T115Lfs*130 0.31 TCGA-HT-8564-01 7 150772200 150772200 G A SLC4A2 Intron 0.62 TCGA-HT-8564-01 7 154862918 154862918 C T HTR5A-AS1 Silent p.P32P 0.41 TCGA-HT-8564-01 7 155457901 155457901 G A RBM33 Missense_Mutation p.A26T 0.39 deleterious(0) unknown(0) TCGA-HT-8564-01 7 27135248 27135248 C T HOXA1 Missense_Mutation p.C95Y 0.16 tolerated(0.06) probably_damaging(0.992) TCGA-HT-8564-01 7 30538452 30538452 G A GGCT Silent p.Y130Y 0.40 TCGA-HT-8564-01 7 31829788 31829790 AGG - PDE1C Intron 0.35 TCGA-HT-8564-01 7 33014804 33014804 C - FKBP9 Frame_Shift_Del p.N129Ifs*10 0.28 TCGA-HT-8564-01 7 43484733 43484733 C T HECW1 Silent p.T654T 0.40 TCGA-HT-8564-01 7 44620554 44620557 AACA - TMED4 Intron 0.71 TCGA-HT-8564-01 7 4824642 4824642 C T AP5Z1 Silent p.F298F 0.40 TCGA-HT-8564-01 7 5540761 5540761 G A FBXL18 Missense_Mutation p.A380V 0.16 tolerated(0.31) benign(0.003) TCGA-HT-8564-01 7 65160046 65160046 G A INTS4L2 RNA 0.19 TCGA-HT-8564-01 7 66415965 66415965 C T TMEM248 Missense_Mutation p.T208M 0.17 deleterious(0.02) probably_damaging(0.917) TCGA-HT-8564-01 7 72281140 72281140 G A TYW1B Nonsense_Mutation p.R117* 0.42 TCGA-HT-8564-01 7 72754699 72754699 C T FKBP6 Silent p.A216A 0.17 TCGA-HT-8564-01 7 73013863 73013863 C T MLXIPL Missense_Mutation p.R355H 0.34 tolerated(0.14) benign(0.009) TCGA-HT-8564-01 7 73471784 73471784 C T ELN Intron 0.24 TCGA-HT-8564-01 7 82584436 82584436 G A PCLO Missense_Mutation p.P1945S 0.15 unknown(0) TCGA-HT-8564-01 7 83823817 83823817 A G SEMA3A Missense_Mutation p.V29A 0.11 tolerated(0.21) benign(0.025) TCGA-HT-8564-01 7 91737807 91737807 G T AKAP9 Splice_Site p.X3849_splice 0.14 TCGA-HT-8564-01 7 94931546 94931548 AGA - PON1 In_Frame_Del p.F293del 0.21 TCGA-HT-8564-01 7 99055926 99055926 G - ATP5J2 3'UTR 0.27 TCGA-HT-8564-01 7 99489657 99489657 C T TRIM4 3'UTR 0.50 TCGA-HT-8564-01 7 99690987 99690989 TCT - MCM7 In_Frame_Del p.E628del 0.41 TCGA-HT-8564-01 8 100796702 100796702 C - VPS13B Frame_Shift_Del p.Q2672Sfs*70 0.29 TCGA-HT-8564-01 8 10383214 10383214 G A PRSS55 Missense_Mutation p.R40H 0.36 tolerated(0.37) benign(0) TCGA-HT-8564-01 8 11301958 11301958 C T FAM167A 5'UTR 0.21 TCGA-HT-8564-01 8 124105886 124105886 T - TBC1D31 Frame_Shift_Del p.F193Lfs*30 0.27 TCGA-HT-8564-01 8 139890478 139890478 C A COL22A1 Missense_Mutation p.R58L 0.42 unknown(0) TCGA-HT-8564-01 8 141595388 141595388 C T AGO2 Silent p.P15P 0.33 TCGA-HT-8564-01 8 142367203 142367203 G A GPR20 Missense_Mutation p.T274M 0.21 tolerated(0.08) possibly_damaging(0.631) TCGA-HT-8564-01 8 143694472 143694472 G A ARC Silent p.S387S 0.46 TCGA-HT-8564-01 8 144130710 144130710 G A C8orf31 3'UTR 0.24 TCGA-HT-8564-01 8 144332526 144332526 C T ZFP41 Silent p.Y171Y 0.26 TCGA-HT-8564-01 8 144332534 144332534 C T ZFP41 Missense_Mutation p.T174M 0.27 tolerated(0.06) benign(0.004) TCGA-HT-8564-01 8 144991396 144991396 C T PLEC Missense_Mutation p.R4335H 0.31 probably_damaging(0.99) TCGA-HT-8564-01 8 144999421 144999421 C T PLEC Missense_Mutation p.R1696Q 0.19 unknown(0) TCGA-HT-8564-01 8 145058234 145058234 G A PARP10 Silent p.N573N 0.27 TCGA-HT-8564-01 8 21926949 21926949 C T DMTN Missense_Mutation p.S105L 0.30 deleterious(0) benign(0.106) TCGA-HT-8564-01 8 22037987 22037987 C T BMP1 Silent p.P356P 0.38 TCGA-HT-8564-01 8 27468075 27468076 AG - CLU Frame_Shift_Del p.L5Afs*25 0.30 TCGA-HT-8564-01 8 28989840 28989840 C T KIF13B Missense_Mutation p.R976H 0.30 deleterious(0.03) probably_damaging(0.988) TCGA-HT-8564-01 8 38840023 38840023 C T HTRA4 Missense_Mutation p.A374V 0.26 tolerated(0.24) benign(0.004) TCGA-HT-8564-01 8 41554024 41554024 C T ANK1 Silent p.P980P 0.34 TCGA-HT-8564-01 8 66620197 66620197 A - MTFR1 Frame_Shift_Del p.G297Efs*21 0.27 TCGA-HT-8564-01 8 71593285 71593285 T C XKR9 5'UTR 0.39 TCGA-HT-8564-01 8 75737579 75737579 C T PI15 Missense_Mutation p.P32L 0.36 tolerated(0.66) benign(0) TCGA-HT-8564-01 8 87559941 87559941 T C CPNE3 Silent p.I274I 0.41 TCGA-HT-8564-01 8 92972726 92972726 C T RUNX1T1 Missense_Mutation p.R531H 0.36 deleterious(0.01) probably_damaging(0.932) TCGA-HT-8564-01 9 100689609 100689609 C T HEMGN 3'UTR 0.17 TCGA-HT-8564-01 9 112166752 112166752 G A PTPN3 Silent p.S643S 0.40 TCGA-HT-8564-01 9 112900482 112900482 G C PALM2-AKAP2 Silent p.G886G 0.40 TCGA-HT-8564-01 9 112963591 112963591 C T C9orf152 Silent p.T119T 0.13 TCGA-HT-8564-01 9 116246504 116246506 CTT - RGS3 In_Frame_Del p.F207del 0.45 TCGA-HT-8564-01 9 116811427 116811427 C T ZNF618 Silent p.Y522Y 0.12 TCGA-HT-8564-01 9 119097282 119097282 C A PAPPA Silent p.S1180S 0.33 TCGA-HT-8564-01 9 123215886 123215886 C T CDK5RAP2 Missense_Mutation p.D881N 0.38 tolerated(0.71) possibly_damaging(0.821) TCGA-HT-8564-01 9 123253597 123253597 G A CDK5RAP2 Silent p.D490D 0.36 TCGA-HT-8564-01 9 123624994 123624996 CTT - PHF19 In_Frame_Del p.K334del 0.15 TCGA-HT-8564-01 9 123858806 123858806 C T CNTRL Nonsense_Mutation p.R196* 0.38 TCGA-HT-8564-01 9 125551233 125551233 C T OR5C1 Missense_Mutation p.R8W 0.17 tolerated(0.19) benign(0) TCGA-HT-8564-01 9 126128637 126128637 G T CRB2 Missense_Mutation p.C249F 0.38 deleterious(0) benign(0.126) TCGA-HT-8564-01 9 130511902 130511902 G A SH2D3C Missense_Mutation p.R243W 0.29 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 9 131072049 131072049 C T TRUB2 Missense_Mutation p.R259H 0.33 deleterious(0.04) possibly_damaging(0.491) TCGA-HT-8564-01 9 131388869 131388869 G A SPTAN1 Missense_Mutation p.R2160H 0.18 tolerated(0.08) benign(0.021) TCGA-HT-8564-01 9 132631191 132631191 G A USP20 Missense_Mutation p.V396I 0.15 tolerated(0.19) benign(0.008) TCGA-HT-8564-01 9 133780652 133780652 C T FIBCD1 Silent p.P365P 0.24 TCGA-HT-8564-01 9 136910513 136910513 C T BRD3 Missense_Mutation p.A373T 0.14 tolerated(0.11) probably_damaging(0.993) TCGA-HT-8564-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.28 TCGA-HT-8564-01 9 139336154 139336154 C T SEC16A 3'UTR 0.36 TCGA-HT-8564-01 9 139401406 139401406 G A NOTCH1 Silent p.N1221N 0.38 TCGA-HT-8564-01 9 139889178 139889178 G A CLIC3 Silent p.S222S 0.46 TCGA-HT-8564-01 9 140137526 140137526 G A TUBB4B Missense_Mutation p.V286M 0.21 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-HT-8564-01 9 140706066 140706066 G A EHMT1 Missense_Mutation p.V956I 0.44 tolerated(0.11) benign(0.149) TCGA-HT-8564-01 9 36170732 36170732 C - CCIN Frame_Shift_Del p.M413Wfs*6 0.14 TCGA-HT-8564-01 9 6990511 6990511 G A KDM4C Silent p.A591A 0.13 TCGA-HT-8564-01 9 72046146 72046146 C T APBA1 3'UTR 0.42 TCGA-HT-8564-01 9 77376996 77376996 G A TRPM6 Missense_Mutation p.R1531C 0.37 tolerated_low_confidence(0.24) benign(0) TCGA-HT-8564-01 9 77390827 77390827 G A TRPM6 Silent p.H1125H 0.38 TCGA-HT-8564-01 9 84547989 84547989 C T RP11-383M4.6 Intron 0.39 TCGA-HT-8564-01 9 84607751 84607751 C T SPATA31D1 Missense_Mutation p.P789L 0.34 tolerated(0.18) benign(0.013) TCGA-HT-8564-01 9 8636794 8636794 C T PTPRD Missense_Mutation p.G39R 0.34 deleterious(0.03) probably_damaging(1) TCGA-HT-8564-01 9 86465050 86465050 C T KIF27 Missense_Mutation p.E1174K 0.19 deleterious(0) possibly_damaging(0.797) TCGA-HT-8564-01 9 88967854 88967854 G A ZCCHC6 Silent p.P87P 0.33 TCGA-HT-8564-01 9 91993634 91993634 G A SEMA4D Silent p.D858D 0.42 TCGA-HT-8564-01 9 95738979 95738979 C T FGD3 Silent p.A147A 0.27 TCGA-HT-8564-01 X 104999270 104999270 T A IL1RAPL2 Missense_Mutation p.L431Q 0.23 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 X 115582769 115582770 - T SLC6A14 Frame_Shift_Ins p.S367Ffs*23 0.48 TCGA-HT-8564-01 X 117480398 117480400 GAG - WDR44 5'UTR 0.83 TCGA-HT-8564-01 X 131208175 131208175 C T MST4 Silent p.D413D 0.86 TCGA-HT-8564-01 X 132161205 132161205 A - USP26 Frame_Shift_Del p.F348Lfs*7 0.68 TCGA-HT-8564-01 X 134482918 134482918 A - ZNF449 Intron 0.42 TCGA-HT-8564-01 X 138869332 138869334 TCT - ATP11C In_Frame_Del p.E534del 0.69 TCGA-HT-8564-01 X 14883271 14883271 C T FANCB Missense_Mutation p.R121H 0.73 tolerated(0.57) benign(0.034) TCGA-HT-8564-01 X 1505487 1505487 C T SLC25A6 3'UTR 0.20 TCGA-HT-8564-01 X 153670771 153670771 G A GDI1 Missense_Mutation p.S396N 0.80 tolerated(0.1) benign(0.101) TCGA-HT-8564-01 X 153678435 153678437 GGA - FAM50A In_Frame_Del p.E297del 0.67 TCGA-HT-8564-01 X 23723697 23723698 - A ACOT9 Frame_Shift_Ins p.N317Qfs*14 0.44 TCGA-HT-8564-01 X 26212350 26212350 C T MAGEB6 Silent p.N129N 0.82 TCGA-HT-8564-01 X 34149532 34149532 G A FAM47A Silent p.D288D 0.29 TCGA-HT-8564-01 X 46951573 46951573 G A RGN Missense_Mutation p.E270K 0.86 tolerated(0.11) benign(0.005) TCGA-HT-8564-01 X 49088267 49088267 G A CACNA1F Nonsense_Mutation p.R50* 0.25 TCGA-HT-8564-01 X 49230913 49230913 C T GAGE2C Missense_Mutation p.T106M 0.16 benign(0.01) TCGA-HT-8564-01 X 50147116 50147116 G A DGKK RNA 0.68 TCGA-HT-8564-01 X 62857963 62857963 C T ARHGEF9 Missense_Mutation p.R499H 0.30 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-HT-8564-01 X 65427138 65427138 G A HEPH Missense_Mutation p.R852Q 0.22 tolerated(0.09) benign(0.004) TCGA-HT-8564-01 X 70464210 70464210 C A ZMYM3 Missense_Mutation p.W1074C 0.44 deleterious(0) probably_damaging(0.996) TCGA-HT-8564-01 X 74517398 74517398 C T UPRT Intron 0.05 TCGA-HT-8564-01 X 84563165 84563165 G A POF1B Missense_Mutation p.R339W 0.82 deleterious(0) probably_damaging(1) TCGA-HT-8564-01 X 9900853 9900853 C - SHROOM2 Frame_Shift_Del p.Q1179Rfs*3 0.36 TCGA-HT-8564-01 Y 3447483 3447483 C T TGIF2LY Silent p.R66R 0.65 TCGA-HT-A4DS-01 11 55653246 55653246 G A TRIM51 Silent p.P114P 0.48 TCGA-HT-A4DS-01 11 76371628 76371628 G T LRRC32 Missense_Mutation p.H337N 0.36 tolerated(0.23) benign(0.012) TCGA-HT-A4DS-01 12 104374741 104374741 G T TDG Splice_Site p.X160_splice 0.72 TCGA-HT-A4DS-01 12 96410892 96410892 C G LTA4H Missense_Mutation p.V293L 0.56 deleterious(0) probably_damaging(0.976) TCGA-HT-A4DS-01 14 102474561 102474561 G T DYNC1H1 Missense_Mutation p.G1955V 0.59 probably_damaging(0.999) TCGA-HT-A4DS-01 14 21250363 21250363 C A RNASE6 3'UTR 0.58 TCGA-HT-A4DS-01 14 71444691 71444691 C T PCNX Missense_Mutation p.S546F 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-HT-A4DS-01 15 31776380 31776380 C T OTUD7A Missense_Mutation p.R633H 0.32 deleterious(0) probably_damaging(0.994) TCGA-HT-A4DS-01 16 30006466 30006466 T C HIRIP3 Missense_Mutation p.S87G 0.08 tolerated(0.11) benign(0.084) TCGA-HT-A4DS-01 17 29527568 29527569 CT - NF1 Frame_Shift_Del p.S340Cfs*12 0.34 TCGA-HT-A4DS-01 17 4356345 4356345 G A SPNS3 Missense_Mutation p.V320I 0.67 tolerated(1) benign(0.012) TCGA-HT-A4DS-01 17 48465454 48465454 G A LRRC59 Missense_Mutation p.R157W 0.65 tolerated(0.06) possibly_damaging(0.791) TCGA-HT-A4DS-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.62 tolerated(0.13) possibly_damaging(0.631) TCGA-HT-A4DS-01 18 44260408 44260408 G A ST8SIA5 Missense_Mutation p.S243L 0.44 probably_damaging(0.999) TCGA-HT-A4DS-01 19 1004802 1004802 C T GRIN3B Silent p.D434D 0.05 TCGA-HT-A4DS-01 19 12866569 12866569 C T BEST2 Silent p.A285A 0.09 TCGA-HT-A4DS-01 19 31040264 31040264 G A ZNF536 Silent p.A1246A 0.42 TCGA-HT-A4DS-01 1 201824023 201824023 T C IPO9 Missense_Mutation p.W295R 0.15 deleterious(0) probably_damaging(0.938) TCGA-HT-A4DS-01 1 22924293 22924293 G A EPHA8 Silent p.A685A 0.56 TCGA-HT-A4DS-01 1 24932146 24932146 G A NCMAP Missense_Mutation p.A73T 0.22 tolerated(0.34) benign(0.001) TCGA-HT-A4DS-01 1 25228881 25228881 G A RUNX3 Missense_Mutation p.P341L 0.23 deleterious(0.03) benign(0.329) TCGA-HT-A4DS-01 1 8415150 8415150 T G RERE Missense_Mutation p.L1566F 0.52 unknown(0) TCGA-HT-A4DS-01 1 85598748 85598748 G A WDR63 3'UTR 0.38 TCGA-HT-A4DS-01 20 31695618 31695618 G A BPIFB4 Missense_Mutation p.V605M 0.35 deleterious(0.02) benign(0.217) TCGA-HT-A4DS-01 2 172379050 172379050 G T CYBRD1 5'UTR 0.56 TCGA-HT-A4DS-01 2 227876966 227876966 C T COL4A4 Missense_Mutation p.V1422I 0.31 unknown(0) TCGA-HT-A4DS-01 2 234235841 234235841 G C SAG Missense_Mutation p.K170N 0.58 deleterious(0) possibly_damaging(0.825) TCGA-HT-A4DS-01 3 186383868 186383868 G A HRG Silent p.S16S 0.22 TCGA-HT-A4DS-01 3 88189554 88189554 T C ZNF654 Missense_Mutation p.V365A 0.27 deleterious(0.03) benign(0.037) TCGA-HT-A4DS-01 3 9870897 9870897 G A TTLL3 Missense_Mutation p.V601M 0.60 tolerated(0.64) benign(0.073) TCGA-HT-A4DS-01 4 71347534 71347534 G A MUC7 Missense_Mutation p.R358Q 0.35 tolerated_low_confidence(0.47) unknown(0) TCGA-HT-A4DS-01 4 79387412 79387412 C T FRAS1 Silent p.I2360I 0.32 TCGA-HT-A4DS-01 4 9987317 9987317 G A SLC2A9 Missense_Mutation p.R171C 0.26 deleterious(0.01) benign(0.44) TCGA-HT-A4DS-01 5 1217005 1217005 C T SLC6A19 Missense_Mutation p.A373V 0.29 tolerated(0.23) benign(0.005) TCGA-HT-A4DS-01 5 140166983 140166983 G A PCDHA1 Missense_Mutation p.A370T 0.20 tolerated_low_confidence(0.08) possibly_damaging(0.536) TCGA-HT-A4DS-01 5 140256611 140256611 C T PCDHA12 Silent p.Y518Y 0.28 TCGA-HT-A4DS-01 5 140348188 140348188 G A PCDHAC2 Missense_Mutation p.D613N 0.08 deleterious(0) probably_damaging(1) TCGA-HT-A4DS-01 5 161113291 161113291 G A GABRA6 Missense_Mutation p.V32I 0.42 tolerated(1) benign(0.003) TCGA-HT-A4DS-01 5 180582042 180582042 G A OR2V2 Missense_Mutation p.A34T 0.29 tolerated(0.67) benign(0) TCGA-HT-A4DS-01 5 5222929 5222929 C T ADAMTS16 Missense_Mutation p.R545C 0.42 deleterious(0) probably_damaging(0.972) TCGA-HT-A4DS-01 6 21594838 21594838 G T SOX4 Missense_Mutation p.G25C 0.17 deleterious(0.02) possibly_damaging(0.861) TCGA-HT-A4DS-01 6 31473467 31473467 G A MICB Silent p.E48E 0.55 TCGA-HT-A4DS-01 7 47851503 47851503 G A PKD1L1 Missense_Mutation p.T2498M 0.24 tolerated(0.06) probably_damaging(0.958) TCGA-HT-A4DV-01 11 65269165 65269166 - G MALAT1 RNA 0.17 TCGA-HT-A4DV-01 12 108912361 108912361 G C FICD Missense_Mutation p.L162F 0.09 tolerated(0.07) benign(0.274) TCGA-HT-A4DV-01 15 68497730 68497730 C T CALML4 5'UTR 0.28 TCGA-HT-A4DV-01 16 67264254 67264254 C T FHOD1 Missense_Mutation p.R1005H 0.19 deleterious(0) probably_damaging(0.999) TCGA-HT-A4DV-01 19 42791872 42791872 C T CIC Missense_Mutation p.A253V 0.15 probably_damaging(0.999) TCGA-HT-A4DV-01 19 56180480 56180480 G T U2AF2 Missense_Mutation p.G326V 0.10 deleterious(0) probably_damaging(0.95) TCGA-HT-A4DV-01 1 115151483 115151483 G A DENND2C Missense_Mutation p.R461C 0.24 tolerated(0.1) benign(0.021) TCGA-HT-A4DV-01 1 183617594 183617594 G A APOBEC4 Missense_Mutation p.A108V 0.12 tolerated(1) benign(0.026) TCGA-HT-A4DV-01 20 54823806 54823806 G A MC3R 5'UTR 0.07 TCGA-HT-A4DV-01 2 189910601 189910601 C T COL5A2 Silent p.L1078L 0.10 TCGA-HT-A4DV-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A4DV-01 2 242176036 242176036 A C HDLBP Silent p.A966A 0.17 TCGA-HT-A4DV-01 2 97506180 97506180 T A ANKRD23 Silent p.A166A 0.22 TCGA-HT-A4DV-01 4 128753891 128753891 A C HSPA4L Missense_Mutation p.E794D 0.17 tolerated(0.15) benign(0.02) TCGA-HT-A4DV-01 5 150050053 150050053 G A MYOZ3 Silent p.T23T 0.08 TCGA-HT-A4DV-01 6 152730807 152730807 C G SYNE1 Missense_Mutation p.E2090Q 0.17 benign(0.196) TCGA-HT-A4DV-01 7 150761619 150761619 G A SLC4A2 Missense_Mutation p.R75H 0.04 deleterious_low_confidence(0) benign(0.198) TCGA-HT-A4DV-01 8 38839229 38839229 A C HTRA4 Missense_Mutation p.I353L 0.14 deleterious(0) benign(0.259) TCGA-HT-A4DV-01 9 136578200 136578200 C T SARDH Silent p.E399E 0.14 TCGA-HT-A4DV-01 X 106362026 106362026 A T RBM41 5'UTR 0.23 TCGA-HT-A4DV-01 X 153043475 153043475 T C PLXNB3 Silent p.N1801N 0.07 TCGA-HT-A4DV-01 X 18924631 18924631 G A PHKA2 Missense_Mutation p.R930W 0.28 deleterious(0) possibly_damaging(0.907) TCGA-HT-A4DV-01 X 37969646 37969646 C T SYTL5 Missense_Mutation p.R525C 0.05 deleterious(0) probably_damaging(0.937) TCGA-HT-A5R5-01 10 93749186 93749186 A G BTAF1 Missense_Mutation p.I901M 0.39 deleterious(0.02) benign(0.282) TCGA-HT-A5R5-01 11 120996422 120996422 A G TECTA Missense_Mutation p.T539A 0.04 tolerated(0.91) benign(0.001) TCGA-HT-A5R5-01 11 122931899 122931899 G A HSPA8 Missense_Mutation p.T45M 0.06 deleterious_low_confidence(0.02) probably_damaging(0.956) TCGA-HT-A5R5-01 11 18739488 18739488 G A IGSF22 Silent p.L321L 0.16 TCGA-HT-A5R5-01 11 6654108 6654108 G A DCHS1 Missense_Mutation p.R879W 0.15 deleterious(0.01) probably_damaging(0.929) TCGA-HT-A5R5-01 12 106477695 106477695 G T NUAK1 Missense_Mutation p.H176N 0.06 deleterious(0) probably_damaging(0.998) TCGA-HT-A5R5-01 12 16050900 16050900 C T STRAP Silent p.G241G 0.33 TCGA-HT-A5R5-01 14 93154396 93154396 G A RIN3 Silent p.Q919Q 0.43 TCGA-HT-A5R5-01 16 67663410 67663410 C G CTCF Missense_Mutation p.S604C 0.11 deleterious(0.05) benign(0.249) TCGA-HT-A5R5-01 16 67860104 67860104 G C TSNAXIP1 Missense_Mutation p.K344N 0.05 deleterious(0) probably_damaging(0.999) TCGA-HT-A5R5-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.77 deleterious(0) probably_damaging(0.998) TCGA-HT-A5R5-01 19 10670353 10670353 G A KRI1 Missense_Mutation p.S326F 0.21 deleterious(0) probably_damaging(0.997) TCGA-HT-A5R5-01 19 49422370 49422370 G T NUCB1 Silent p.V300V 0.09 TCGA-HT-A5R5-01 19 56459540 56459540 G A NLRP8 Missense_Mutation p.R91H 0.31 tolerated(0.33) benign(0.006) TCGA-HT-A5R5-01 1 150131105 150131105 G A PLEKHO1 Missense_Mutation p.S206N 0.07 tolerated(0.14) benign(0.009) TCGA-HT-A5R5-01 1 46976622 46976622 C T DMBX1 Missense_Mutation p.R117C 0.13 deleterious(0) probably_damaging(1) TCGA-HT-A5R5-01 22 25119191 25119191 G A PIWIL3 Nonsense_Mutation p.R764* 0.07 TCGA-HT-A5R5-01 2 120197767 120197767 C T SCTR Missense_Mutation p.A417T 0.30 tolerated(0.22) benign(0.169) TCGA-HT-A5R5-01 2 208866024 208866024 C T PLEKHM3 Missense_Mutation p.A114T 0.16 tolerated(0.42) benign(0.001) TCGA-HT-A5R5-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A5R5-01 3 108308132 108308132 G A KIAA1524 Missense_Mutation p.R31W 0.09 deleterious(0) probably_damaging(1) TCGA-HT-A5R5-01 3 119305222 119305222 G A ADPRH Missense_Mutation p.G130E 0.05 deleterious(0) probably_damaging(1) TCGA-HT-A5R5-01 3 195803944 195803944 G C TFRC Missense_Mutation p.F9L 0.27 tolerated(0.34) benign(0.002) TCGA-HT-A5R5-01 3 9594261 9594261 T C LHFPL4 Missense_Mutation p.I35V 0.06 tolerated(0.14) possibly_damaging(0.638) TCGA-HT-A5R5-01 5 140070858 140070858 A T HARS Missense_Mutation p.V11E 0.24 deleterious(0) possibly_damaging(0.723) TCGA-HT-A5R5-01 5 54720585 54720585 C T SKIV2L2 Silent p.A1038A 0.09 TCGA-HT-A5R5-01 6 146126348 146126348 A G FBXO30 Silent p.S398S 0.35 TCGA-HT-A5R5-01 6 33660584 33660584 T G ITPR3 Missense_Mutation p.F2513C 0.04 deleterious(0) probably_damaging(0.999) TCGA-HT-A5R5-01 6 84233254 84233254 A T PRSS35 Nonsense_Mutation p.R32* 0.08 TCGA-HT-A5R5-01 7 127978846 127978846 C A RBM28 Missense_Mutation p.D128Y 0.08 deleterious(0) probably_damaging(0.91) TCGA-HT-A5R5-01 7 131829883 131829889 GCTCTTC - PLXNA4 Frame_Shift_Del p.W1738* 0.28 TCGA-HT-A5R5-01 7 142480060 142480060 C T PRSS3P2 RNA 0.17 TCGA-HT-A5R5-01 8 110100140 110100140 C G TRHR Silent p.A133A 0.38 TCGA-HT-A5R5-01 8 27279873 27279873 C T PTK2B Missense_Mutation p.A175V 0.07 deleterious(0) probably_damaging(0.979) TCGA-HT-A5R5-01 9 77277523 77277523 G T RORB Splice_Site p.X298_splice 0.14 TCGA-HT-A5R5-01 X 153906497 153906497 G C GAB3 Missense_Mutation p.S574R 0.06 deleterious(0) benign(0.342) TCGA-HT-A5R5-01 X 31747794 31747794 T C DMD Silent p.K2538K 0.35 TCGA-HT-A5R5-01 X 76937081 76937081 C A ATRX Nonsense_Mutation p.E1223* 0.23 TCGA-HT-A5R7-01 12 101577988 101577988 A T SLC5A8 Missense_Mutation p.L326M 0.12 tolerated(0.07) possibly_damaging(0.753) TCGA-HT-A5R7-01 12 5672710 5672710 G C ANO2 Missense_Mutation p.L918V 0.06 tolerated(0.12) benign(0.133) TCGA-HT-A5R7-01 12 69125432 69125432 G A NUP107 Missense_Mutation p.R644Q 0.08 deleterious(0) possibly_damaging(0.651) TCGA-HT-A5R7-01 14 94069684 94069684 G A UNC79 Missense_Mutation p.R1048H 0.06 tolerated(0.07) probably_damaging(0.998) TCGA-HT-A5R7-01 15 34646897 34646897 C A NUTM1 Silent p.I414I 0.06 TCGA-HT-A5R7-01 15 43991229 43991229 G A CKMT1A Missense_Mutation p.R399H 0.04 tolerated(0.05) benign(0.006) TCGA-HT-A5R7-01 15 89383305 89383305 C T ACAN Missense_Mutation p.R173W 0.29 deleterious(0) unknown(0) TCGA-HT-A5R7-01 16 10274071 10274071 G A GRIN2A Silent p.D66D 0.07 TCGA-HT-A5R7-01 16 67208077 67208077 G A NOL3 Missense_Mutation p.G2D 0.26 deleterious(0.03) probably_damaging(1) TCGA-HT-A5R7-01 17 26861989 26861989 C A FOXN1 Missense_Mutation p.P467H 0.10 tolerated(0.21) benign(0.019) TCGA-HT-A5R7-01 17 79059482 79059482 C T BAIAP2 Missense_Mutation p.T103M 0.05 deleterious(0.02) probably_damaging(0.972) TCGA-HT-A5R7-01 19 42721095 42721095 C T DEDD2 Missense_Mutation p.G22E 0.16 deleterious(0.04) probably_damaging(0.972) TCGA-HT-A5R7-01 19 51628473 51628473 G A SIGLEC9 Missense_Mutation p.R81Q 0.27 tolerated(0.21) benign(0.28) TCGA-HT-A5R7-01 1 113257684 113257684 C T PPM1J Silent p.L80L 0.16 TCGA-HT-A5R7-01 1 119936434 119936434 C T HAO2 Nonsense_Mutation p.R343* 0.04 TCGA-HT-A5R7-01 1 182369551 182369551 A G TEDDM1 Missense_Mutation p.W24R 0.05 tolerated(0.48) probably_damaging(0.955) TCGA-HT-A5R7-01 1 197031010 197031010 C T F13B Missense_Mutation p.A119T 0.12 tolerated(0.74) benign(0.021) TCGA-HT-A5R7-01 21 19647644 19647644 G T TMPRSS15 Missense_Mutation p.A925E 0.10 deleterious(0.01) possibly_damaging(0.839) TCGA-HT-A5R7-01 22 40066233 40066233 G A CACNA1I Missense_Mutation p.R1462Q 0.06 tolerated(0.08) benign(0.238) TCGA-HT-A5R7-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A5R7-01 2 219299258 219299258 T C VIL1 Missense_Mutation p.S504P 0.11 deleterious(0.03) probably_damaging(0.95) TCGA-HT-A5R7-01 2 33745641 33745641 T G RASGRP3 Silent p.P86P 0.04 TCGA-HT-A5R7-01 3 100096610 100096610 T C TOMM70A Missense_Mutation p.N344S 0.31 tolerated(0.65) benign(0.004) TCGA-HT-A5R7-01 3 13363258 13363258 G C NUP210 Missense_Mutation p.L1665V 0.29 tolerated(1) benign(0.259) TCGA-HT-A5R7-01 3 13655525 13655525 C T FBLN2 Silent p.A530A 0.26 TCGA-HT-A5R7-01 3 42906981 42906981 C T ACKR2 Silent p.A329A 0.07 TCGA-HT-A5R7-01 4 83742201 83742201 T G SEC31A Silent p.R1158R 0.29 TCGA-HT-A5R7-01 5 180056949 180056949 T A FLT4 Missense_Mutation p.I224F 0.06 deleterious(0.03) benign(0.365) TCGA-HT-A5R7-01 5 52394355 52394355 G A MOCS2 3'UTR 0.31 TCGA-HT-A5R7-01 6 131913582 131913582 T C MED23 Silent p.R1139R 0.20 TCGA-HT-A5R7-01 7 100684757 100684757 A T MUC17 Missense_Mutation p.S3354C 0.06 probably_damaging(0.987) TCGA-HT-A5R7-01 7 150553856 150553856 G A AOC1 Missense_Mutation p.V100I 0.38 tolerated(0.3) benign(0.018) TCGA-HT-A5R7-01 8 102582593 102582593 T G GRHL2 Silent p.A235A 0.06 TCGA-HT-A5R7-01 9 86383805 86383821 AATAAGAATTTTATGAA - GKAP1 Frame_Shift_Del p.V217Efs*12 0.28 TCGA-HT-A5R7-01 9 99699380 99699380 G A NUTM2G Silent p.P339P 0.25 TCGA-HT-A5R7-01 X 129354401 129354401 C G ZNF280C Missense_Mutation p.K483N 0.04 deleterious(0) possibly_damaging(0.659) TCGA-HT-A5R7-01 X 132548972 132548972 C T GPC4 Missense_Mutation p.A8T 0.08 tolerated(0.73) benign(0.001) TCGA-HT-A5R7-01 X 2729413 2729413 C G XG Missense_Mutation p.S164C 0.24 tolerated(0.06) benign(0.003) TCGA-HT-A5R7-01 X 34961355 34961355 A G FAM47B Missense_Mutation p.N136S 0.09 tolerated(0.17) benign(0.015) TCGA-HT-A5R7-01 X 76920179 76920180 - C ATRX Frame_Shift_Ins p.K1300Efs*9 0.22 TCGA-HT-A5R9-01 10 114911515 114911517 AAG - TCF7L2 In_Frame_Del p.K347del 0.24 TCGA-HT-A5R9-01 10 82033519 82033519 G A MAT1A 3'UTR 0.29 TCGA-HT-A5R9-01 11 129758574 129758574 C A NFRKB Missense_Mutation p.Q97H 0.05 tolerated(0.2) unknown(0) TCGA-HT-A5R9-01 11 71733448 71733448 T G NUMA1 Missense_Mutation p.L103F 0.03 possibly_damaging(0.583) TCGA-HT-A5R9-01 11 75277978 75277978 C T SERPINH1 Missense_Mutation p.T195M 0.24 tolerated(0.08) benign(0.258) TCGA-HT-A5R9-01 12 50035952 50035952 A G FMNL3 3'UTR 0.39 TCGA-HT-A5R9-01 13 46701667 46701667 G A LCP1 3'UTR 0.40 TCGA-HT-A5R9-01 14 24651580 24651580 G A IPO4 Silent p.H834H 0.35 TCGA-HT-A5R9-01 14 45590142 45590144 TTC - FKBP3 In_Frame_Del p.K157del 0.28 TCGA-HT-A5R9-01 14 99641424 99641424 C T BCL11B Silent p.A583A 0.48 TCGA-HT-A5R9-01 15 74290533 74290533 C T PML Silent p.N106N 0.06 TCGA-HT-A5R9-01 15 90631839 90631839 T C IDH2 Missense_Mutation p.R172G 0.43 deleterious_low_confidence(0) probably_damaging(1) TCGA-HT-A5R9-01 16 7568267 7568267 C T RBFOX1 Missense_Mutation p.A69V 0.41 deleterious(0.02) possibly_damaging(0.629) TCGA-HT-A5R9-01 17 18053797 18053797 G A MYO15A Missense_Mutation p.G2423S 0.33 unknown(0) TCGA-HT-A5R9-01 17 40322247 40322247 C T KCNH4 Missense_Mutation p.R423H 0.36 deleterious(0.03) probably_damaging(0.909) TCGA-HT-A5R9-01 17 45925200 45925200 G A SP6 Missense_Mutation p.S199F 0.40 deleterious(0.02) benign(0.094) TCGA-HT-A5R9-01 17 57153020 57153020 C A TRIM37 Missense_Mutation p.E224D 0.07 tolerated(0.07) benign(0.263) TCGA-HT-A5R9-01 17 60782838 60782838 C A MARCH10 Intron 0.38 TCGA-HT-A5R9-01 18 46284511 46284511 G A CTIF Missense_Mutation p.R269H 0.06 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-HT-A5R9-01 18 47566657 47566657 G A MYO5B Missense_Mutation p.R56C 0.34 deleterious(0.04) benign(0.008) TCGA-HT-A5R9-01 18 67993430 67993430 G A SOCS6 Missense_Mutation p.R509H 0.40 deleterious(0.02) probably_damaging(1) TCGA-HT-A5R9-01 19 13220750 13220750 G A TRMT1 Missense_Mutation p.A362V 0.05 tolerated(0.65) benign(0.004) TCGA-HT-A5R9-01 19 15271838 15271838 G A NOTCH3 Missense_Mutation p.P2201S 0.53 tolerated(0.27) benign(0.001) TCGA-HT-A5R9-01 19 18871031 18871031 C T CRTC1 Silent p.A309A 0.33 TCGA-HT-A5R9-01 19 18968249 18968249 C T UPF1 Missense_Mutation p.R697C 0.44 deleterious(0) probably_damaging(0.939) TCGA-HT-A5R9-01 19 42799067 42799069 GAT - CIC In_Frame_Del p.K1517_I1518delinsN 0.58 TCGA-HT-A5R9-01 19 55451739 55451739 C T NLRP7 Missense_Mutation p.V150I 0.67 tolerated(0.36) benign(0.025) TCGA-HT-A5R9-01 19 58863949 58863951 CTT - A1BG Intron 0.19 TCGA-HT-A5R9-01 1 158669721 158669721 G A OR6K2 Missense_Mutation p.T241M 0.46 deleterious(0) probably_damaging(0.998) TCGA-HT-A5R9-01 1 162313698 162313698 C T NOS1AP Missense_Mutation p.T176M 0.39 tolerated(0.06) possibly_damaging(0.743) TCGA-HT-A5R9-01 1 172558108 172558108 A G SUCO Missense_Mutation p.I623V 0.41 tolerated(0.72) benign(0.002) TCGA-HT-A5R9-01 1 202705465 202705465 C T KDM5B Missense_Mutation p.R1047Q 0.13 tolerated(0.08) benign(0.153) TCGA-HT-A5R9-01 1 206904037 206904037 A C MAPKAPK2 Silent p.P232P 0.33 TCGA-HT-A5R9-01 1 44019524 44019524 G A PTPRF Silent p.R97R 0.07 TCGA-HT-A5R9-01 21 45774548 45774548 G A TRPM2 Silent p.S61S 0.10 TCGA-HT-A5R9-01 2 100055074 100055076 ACA - REV1 In_Frame_Del p.V401del 0.37 TCGA-HT-A5R9-01 2 130930223 130930225 AAG - SMPD4 In_Frame_Del p.F200del 0.12 TCGA-HT-A5R9-01 2 162851494 162851494 C T DPP4 Missense_Mutation p.V726I 0.05 deleterious(0.01) benign(0) TCGA-HT-A5R9-01 3 100373800 100373800 G A GPR128 Missense_Mutation p.G501S 0.43 tolerated(0.96) benign(0.003) TCGA-HT-A5R9-01 3 11887995 11887995 C T TAMM41 Missense_Mutation p.G39E 0.38 tolerated(0.05) possibly_damaging(0.795) TCGA-HT-A5R9-01 3 132086622 132086622 C T ACPP Missense_Mutation p.R405C 0.28 tolerated(0.06) benign(0.109) TCGA-HT-A5R9-01 3 159482639 159482639 C A IQCJ-SCHIP1 Silent p.P233P 0.39 TCGA-HT-A5R9-01 4 26426014 26426017 CAGA - RBPJ Frame_Shift_Del p.T197Lfs*8 0.64 TCGA-HT-A5R9-01 4 90647663 90647663 G A SNCA 3'UTR 0.58 TCGA-HT-A5R9-01 5 139715486 139715489 CAGA - HBEGF Frame_Shift_Del p.L175Wfs*25 0.10 TCGA-HT-A5R9-01 5 140763850 140763850 G A PCDHGA7 Missense_Mutation p.A462T 0.06 deleterious_low_confidence(0.02) benign(0.015) TCGA-HT-A5R9-01 5 55075828 55075828 C T DDX4 Missense_Mutation p.P144L 0.21 tolerated_low_confidence(0.06) benign(0.04) TCGA-HT-A5R9-01 6 128294828 128294828 G A PTPRK Missense_Mutation p.R1378W 0.04 deleterious(0) probably_damaging(0.995) TCGA-HT-A5R9-01 6 32920870 32920870 A G HLA-DMA 5'UTR 0.10 TCGA-HT-A5R9-01 7 24324984 24324984 C T NPY Missense_Mutation p.A42V 0.07 tolerated(0.09) possibly_damaging(0.891) TCGA-HT-A5R9-01 8 54963679 54963679 G A LYPLA1 Missense_Mutation p.P178S 0.05 tolerated(0.06) benign(0.185) TCGA-HT-A5R9-01 8 85097231 85097231 G A RALYL 5'UTR 0.13 TCGA-HT-A5R9-01 9 116136465 116136465 C T HDHD3 Missense_Mutation p.S57N 0.41 tolerated(0.32) benign(0.012) TCGA-HT-A5R9-01 X 150793999 150793999 T C PASD1 Missense_Mutation p.L209P 0.24 tolerated(0.21) benign(0.012) TCGA-HT-A5R9-01 X 16887194 16887197 CTTA - RBBP7 Splice_Site p.X98_splice 0.49 TCGA-HT-A5RA-01 10 88231975 88231975 G A WAPAL Missense_Mutation p.R674C 0.75 deleterious(0) probably_damaging(1) TCGA-HT-A5RA-01 10 89692877 89692877 G A PTEN Missense_Mutation p.A121T 0.67 deleterious(0.02) probably_damaging(0.993) TCGA-HT-A5RA-01 11 1956135 1956135 C T TNNT3 Missense_Mutation p.R223C 0.43 deleterious(0.03) benign(0.105) TCGA-HT-A5RA-01 11 4903765 4903765 C T OR51T1 Silent p.D239D 0.43 TCGA-HT-A5RA-01 11 78369775 78369775 T C TENM4 Silent p.T2546T 0.48 TCGA-HT-A5RA-01 12 121176678 121176678 G A ACADS Missense_Mutation p.R330H 0.40 deleterious(0.03) probably_damaging(0.984) TCGA-HT-A5RA-01 12 311930 311930 T G SLC6A12 Missense_Mutation p.T156P 0.40 deleterious(0.01) possibly_damaging(0.751) TCGA-HT-A5RA-01 12 49937975 49937975 G T KCNH3 Silent p.L333L 0.42 TCGA-HT-A5RA-01 14 34263138 34263138 C T NPAS3 Missense_Mutation p.R397C 0.38 deleterious(0) probably_damaging(0.912) TCGA-HT-A5RA-01 15 102312969 102312969 C T RN7SL209P 3'Flank 0.39 TCGA-HT-A5RA-01 16 1552359 1552359 G A TELO2 Missense_Mutation p.R536Q 0.55 tolerated(0.45) benign(0.01) TCGA-HT-A5RA-01 16 67034837 67034837 C T CES4A Silent p.R160R 0.32 TCGA-HT-A5RA-01 17 51900500 51900500 C T KIF2B Missense_Mutation p.R36C 0.41 deleterious(0) probably_damaging(0.998) TCGA-HT-A5RA-01 17 73894890 73894890 C G MRPL38 3'UTR 0.38 TCGA-HT-A5RA-01 17 7637984 7637984 G A DNAH2 Silent p.S312S 0.38 TCGA-HT-A5RA-01 17 8216517 8216517 C T ARHGEF15 Silent p.F293F 0.36 TCGA-HT-A5RA-01 18 56823020 56823020 G A SEC11C Missense_Mutation p.V150M 0.37 deleterious(0.04) benign(0.393) TCGA-HT-A5RA-01 19 35831915 35831915 G A CD22 Missense_Mutation p.A461T 0.26 tolerated(0.19) benign(0.003) TCGA-HT-A5RA-01 19 38572687 38572687 G A SIPA1L3 Missense_Mutation p.R161K 0.32 tolerated(0.6) benign(0.016) TCGA-HT-A5RA-01 19 54081063 54081063 G A ZNF331 Missense_Mutation p.G417R 0.25 deleterious(0.05) probably_damaging(1) TCGA-HT-A5RA-01 19 6495759 6495759 G A TUBB4A Missense_Mutation p.R251C 0.25 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-HT-A5RA-01 1 153632019 153632021 AAC - SNAPIN In_Frame_Del p.N97del 0.47 TCGA-HT-A5RA-01 1 16343699 16343699 C T HSPB7 Missense_Mutation p.R68H 0.39 tolerated(0.07) possibly_damaging(0.648) TCGA-HT-A5RA-01 1 207252343 207252343 G A PFKFB2 3'Flank 0.44 TCGA-HT-A5RA-01 1 22176934 22176934 C T HSPG2 Missense_Mutation p.V2406M 0.34 benign(0.316) TCGA-HT-A5RA-01 1 29611340 29611340 C T PTPRU Silent p.L759L 0.38 TCGA-HT-A5RA-01 1 47024299 47024299 G A MKNK1 Missense_Mutation p.A449V 0.32 tolerated(0.1) benign(0.137) TCGA-HT-A5RA-01 1 57411659 57411659 G A C8B Missense_Mutation p.H314Y 0.43 deleterious(0.01) probably_damaging(0.981) TCGA-HT-A5RA-01 1 906524 906524 G A PLEKHN1 Missense_Mutation p.G215E 0.52 tolerated(0.17) benign(0.059) TCGA-HT-A5RA-01 20 60885876 60885876 G T LAMA5 Missense_Mutation p.R3431S 0.14 possibly_damaging(0.879) TCGA-HT-A5RA-01 21 34911630 34911630 C T GART Splice_Site 0.29 TCGA-HT-A5RA-01 21 43413378 43413378 C T ZBTB21 Missense_Mutation p.R276Q 0.32 tolerated(0.39) benign(0.003) TCGA-HT-A5RA-01 22 21083938 21083938 C T PI4KA Silent p.T1490T 0.50 TCGA-HT-A5RA-01 2 230923895 230923895 G A SLC16A14 Silent p.N58N 0.52 TCGA-HT-A5RA-01 2 33525560 33525560 A G LTBP1 Missense_Mutation p.Q1093R 0.47 tolerated(0.42) benign(0.013) TCGA-HT-A5RA-01 3 112546321 112546321 G A CD200R1L Missense_Mutation p.S108L 0.43 tolerated(0.42) benign(0.003) TCGA-HT-A5RA-01 3 195488980 195488980 C T MUC4 Silent p.Q4830Q 0.28 TCGA-HT-A5RA-01 3 39139649 39139649 G A GORASP1 3'UTR 0.11 TCGA-HT-A5RA-01 4 164271443 164271443 C T NPY5R Silent p.D6D 0.38 TCGA-HT-A5RA-01 4 189064844 189064844 C T TRIML1 Intron 0.48 TCGA-HT-A5RA-01 4 56734654 56734654 G T EXOC1 Nonsense_Mutation p.E190* 0.43 TCGA-HT-A5RA-01 4 980858 980858 C T IDUA 5'UTR 0.44 TCGA-HT-A5RA-01 5 94749822 94749822 C T FAM81B Silent p.L155L 0.44 TCGA-HT-A5RA-01 6 5109500 5109500 C G LYRM4 3'UTR 0.53 TCGA-HT-A5RA-01 7 100377162 100377162 C T ZAN Missense_Mutation p.R2137W 0.25 unknown(0) TCGA-HT-A5RA-01 7 126173579 126173579 G A GRM8 Silent p.R619R 0.30 TCGA-HT-A5RA-01 7 140373257 140373257 C G ADCK2 Missense_Mutation p.L43V 0.37 tolerated(0.15) benign(0.059) TCGA-HT-A5RA-01 7 142573633 142573633 G A TRPV6 Missense_Mutation p.R263W 0.32 deleterious(0.03) benign(0.047) TCGA-HT-A5RA-01 7 142919653 142919653 C T TAS2R40 Missense_Mutation p.S161L 0.29 tolerated(0.66) benign(0.004) TCGA-HT-A5RA-01 7 147259309 147259309 C T CNTNAP2 Silent p.S619S 0.31 TCGA-HT-A5RA-01 7 35872445 35872445 A G SEPT7 Missense_Mutation p.N36S 0.43 tolerated(0.06) benign(0.168) TCGA-HT-A5RA-01 8 125107242 125107242 G A FER1L6 Missense_Mutation p.R1553Q 0.30 deleterious(0) possibly_damaging(0.871) TCGA-HT-A5RA-01 8 144941624 144941624 G A EPPK1 Missense_Mutation p.A1933V 0.34 probably_damaging(0.999) TCGA-HT-A5RA-01 8 6793553 6793553 G A DEFA4 Missense_Mutation p.R95C 0.58 deleterious_low_confidence(0.02) benign(0.001) TCGA-HT-A5RA-01 8 93017228 93017228 T C RUNX1T1 Intron 0.67 TCGA-HT-A5RA-01 9 18906845 18906845 A T ADAMTSL1 Missense_Mutation p.H1706L 0.05 tolerated(0.44) possibly_damaging(0.778) TCGA-HT-A5RA-01 9 35546856 35546856 G C RUSC2 Missense_Mutation p.G113A 0.14 tolerated(0.31) benign(0.437) TCGA-HT-A5RA-01 9 35546876 35546876 G A RUSC2 Missense_Mutation p.D120N 0.12 tolerated(0.64) benign(0.146) TCGA-HT-A5RA-01 9 35548107 35548107 C A RUSC2 Missense_Mutation p.A530D 0.27 deleterious(0.01) benign(0.358) TCGA-HT-A5RA-01 9 72349082 72349082 C - PTAR1 Frame_Shift_Del p.E138Kfs*13 0.38 TCGA-HT-A5RA-01 X 117960229 117960229 G A ZCCHC12 Missense_Mutation p.R341Q 0.39 tolerated(0.13) possibly_damaging(0.842) TCGA-HT-A5RA-01 X 135313709 135313709 A G MAP7D3 Silent p.A469A 0.40 TCGA-HT-A5RA-01 X 149638772 149638772 G A MAMLD1 Silent p.A284A 0.42 TCGA-HT-A5RA-01 X 152773771 152773771 C T BGN Silent p.F325F 0.50 TCGA-HT-A5RA-01 X 44949046 44949046 G A KDM6A Missense_Mutation p.A1203T 0.32 tolerated(0.08) benign(0.052) TCGA-HT-A5RA-01 X 47307146 47307146 G A ZNF41 Nonsense_Mutation p.R675* 0.45 TCGA-HT-A5RA-01 X 64887583 64887583 C T MSN 5'UTR 0.43 TCGA-HT-A5RA-01 X 89177102 89177102 C T TGIF2LX Silent p.D6D 0.43 TCGA-HT-A5RB-01 10 86001154 86001154 C T LRIT1 Silent p.A14A 0.41 TCGA-HT-A5RB-01 11 34139764 34139764 G A NAT10 Missense_Mutation p.V199I 0.45 deleterious(0.05) benign(0.259) TCGA-HT-A5RB-01 11 56258374 56258374 T C OR5M8 Missense_Mutation p.E158G 0.38 deleterious(0.03) benign(0.405) TCGA-HT-A5RB-01 14 20692401 20692401 T C OR11H6 Missense_Mutation p.I178T 0.51 tolerated(0.12) benign(0.07) TCGA-HT-A5RB-01 15 81641895 81641895 A G TMC3 Missense_Mutation p.V366A 0.36 deleterious(0.01) possibly_damaging(0.766) TCGA-HT-A5RB-01 17 17699246 17699246 G A RAI1 Missense_Mutation p.G995D 0.07 deleterious(0) probably_damaging(0.995) TCGA-HT-A5RB-01 17 60349340 60349340 G A TBC1D3P2 RNA 0.47 TCGA-HT-A5RB-01 17 7578235 7578235 T G TP53 Missense_Mutation p.Y205S 0.86 deleterious(0) possibly_damaging(0.523) TCGA-HT-A5RB-01 18 29121270 29121270 A G DSG2 Missense_Mutation p.E665G 0.18 deleterious(0) probably_damaging(0.999) TCGA-HT-A5RB-01 19 40719044 40719044 T C MAP3K10 Missense_Mutation p.S596P 0.44 deleterious(0.03) probably_damaging(0.996) TCGA-HT-A5RB-01 19 52618795 52618795 C G ZNF616 Missense_Mutation p.R541T 0.35 tolerated(0.2) possibly_damaging(0.876) TCGA-HT-A5RB-01 19 9088746 9088746 T C MUC16 Silent p.T1023T 0.40 TCGA-HT-A5RB-01 1 23240118 23240118 G A EPHB2 3'UTR 0.50 TCGA-HT-A5RB-01 21 42710402 42710402 C T FAM3B Silent p.Y87Y 0.39 TCGA-HT-A5RB-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A5RB-01 2 61575888 61575888 T G USP34 Intron 0.11 TCGA-HT-A5RB-01 5 127640762 127640762 C A FBN2 Missense_Mutation p.C1896F 0.08 deleterious(0) probably_damaging(0.999) TCGA-HT-A5RB-01 5 135382574 135382574 T C TGFBI Missense_Mutation p.I165T 0.07 deleterious(0.04) benign(0.446) TCGA-HT-A5RB-01 7 154002608 154002608 C T DPP6 Intron 0.15 TCGA-HT-A5RB-01 7 156932027 156932027 A G UBE3C Missense_Mutation p.R21G 0.09 deleterious(0.02) benign(0.003) TCGA-HT-A5RB-01 7 73520287 73520287 A G LIMK1 Missense_Mutation p.I231V 0.45 tolerated(1) benign(0.1) TCGA-HT-A5RB-01 8 17447012 17447012 A G PDGFRL Missense_Mutation p.K31E 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-HT-A5RB-01 8 79598774 79598774 A - ZC2HC1A Frame_Shift_Del p.G96Afs*43 0.10 TCGA-HT-A5RB-01 8 9588459 9588459 C T TNKS Silent p.P687P 0.37 TCGA-HT-A5RB-01 9 138676392 138676392 G A KCNT1 Silent p.K985K 0.62 TCGA-HT-A5RB-01 9 19435024 19435024 A G ACER2 Missense_Mutation p.I149V 0.12 tolerated(0.45) benign(0.006) TCGA-HT-A5RB-01 X 1413343 1413343 G A CSF2RA Missense_Mutation p.V257I 0.38 tolerated(1) benign(0.002) TCGA-HT-A5RB-01 X 76814303 76814306 ATAA - ATRX Frame_Shift_Del p.F2113Sfs*9 0.88 TCGA-HT-A5RC-01 10 17204201 17204201 G C TRDMT1 Missense_Mutation p.T96R 0.48 deleterious(0) probably_damaging(0.993) TCGA-HT-A5RC-01 10 5567140 5567140 G A CALML3 Missense_Mutation p.R31H 0.44 deleterious_low_confidence(0) benign(0.008) TCGA-HT-A5RC-01 10 68040315 68040315 A C CTNNA3 Missense_Mutation p.N599K 0.52 tolerated(1) unknown(0) TCGA-HT-A5RC-01 11 117774318 117774318 C T TMPRSS13 Intron 0.24 TCGA-HT-A5RC-01 11 55904472 55904472 G A OR8J3 Silent p.C241C 0.39 TCGA-HT-A5RC-01 12 100043170 100043170 G A FAM71C Silent p.E240E 0.35 TCGA-HT-A5RC-01 12 7527057 7527057 G A CD163L1 Silent p.D1130D 0.35 TCGA-HT-A5RC-01 12 89916851 89916854 TTTG - GALNT4 Frame_Shift_Del p.N491Kfs*3 0.40 TCGA-HT-A5RC-01 12 91449551 91449551 G T KERA Missense_Mutation p.L170I 0.30 deleterious(0.01) possibly_damaging(0.507) TCGA-HT-A5RC-01 14 65007730 65007730 G A HSPA2 Missense_Mutation p.A55T 0.25 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-HT-A5RC-01 15 40384022 40384022 C G BMF Missense_Mutation p.G174A 0.12 tolerated(0.79) benign(0.006) TCGA-HT-A5RC-01 15 43545044 43545044 C G TGM5 Missense_Mutation p.V259L 0.33 deleterious(0) probably_damaging(0.952) TCGA-HT-A5RC-01 15 78466000 78466000 C T ACSBG1 Missense_Mutation p.R675Q 0.40 tolerated(0.09) benign(0.009) TCGA-HT-A5RC-01 16 28996764 28996764 G A LAT Missense_Mutation p.C45Y 0.31 tolerated_low_confidence(0.1) possibly_damaging(0.588) TCGA-HT-A5RC-01 16 841849 841849 A G CHTF18 Splice_Site p.X369_splice 0.15 TCGA-HT-A5RC-01 17 15620216 15620216 A G ZNF286A Missense_Mutation p.H393R 0.24 tolerated(0.12) probably_damaging(0.999) TCGA-HT-A5RC-01 17 48613860 48613860 G A EPN3 5'UTR 0.32 TCGA-HT-A5RC-01 17 60111221 60111221 C T MED13 Silent p.K247K 0.10 TCGA-HT-A5RC-01 17 79205314 79205314 G C ENTHD2 Intron 0.44 TCGA-HT-A5RC-01 17 8741186 8741186 C T PIK3R6 Silent p.A64A 0.33 TCGA-HT-A5RC-01 18 19263476 19263476 A T ABHD3 Intron 0.38 TCGA-HT-A5RC-01 18 3597178 3597179 - T DLGAP1 Intron 0.10 TCGA-HT-A5RC-01 18 42532027 42532027 G A SETBP1 Missense_Mutation p.D908N 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-HT-A5RC-01 18 76752248 76752248 C T SALL3 Missense_Mutation p.A86V 0.35 tolerated(0.14) unknown(0) TCGA-HT-A5RC-01 19 18377437 18377437 C T KIAA1683 Missense_Mutation p.A305T 0.22 tolerated(0.12) benign(0.091) TCGA-HT-A5RC-01 19 37903500 37903502 TAA - ZNF569 Nonstop_Mutation p.H*686Q 0.34 TCGA-HT-A5RC-01 19 613254 613254 G A HCN2 Missense_Mutation p.V531I 0.33 tolerated(1) benign(0.002) TCGA-HT-A5RC-01 1 12856042 12856042 T A PRAMEF1 Missense_Mutation p.L441Q 0.14 deleterious(0.02) probably_damaging(0.939) TCGA-HT-A5RC-01 1 149916850 149916850 C T OTUD7B Missense_Mutation p.E480K 0.05 tolerated(1) benign(0.036) TCGA-HT-A5RC-01 1 152282387 152282387 C T FLG Missense_Mutation p.E1659K 0.35 benign(0.292) TCGA-HT-A5RC-01 1 228548163 228548163 C T OBSCN Intron 0.37 TCGA-HT-A5RC-01 1 34258115 34258115 C T CSMD2 Missense_Mutation p.A447T 0.06 tolerated(0.79) benign(0.021) TCGA-HT-A5RC-01 1 43110444 43110444 G A CCDC30 Missense_Mutation p.R619Q 0.31 tolerated(0.07) benign(0.102) TCGA-HT-A5RC-01 1 46120391 46120391 G A GPBP1L1 Nonsense_Mutation p.R101* 0.43 TCGA-HT-A5RC-01 1 75038487 75038487 A C C1orf173 Silent p.G969G 0.37 TCGA-HT-A5RC-01 1 79470885 79470885 C T ELTD1 Silent p.L14L 0.29 TCGA-HT-A5RC-01 20 33568534 33568534 C T MYH7B Missense_Mutation p.R208C 0.32 benign(0.016) TCGA-HT-A5RC-01 21 33044602 33044602 C T SCAF4 Missense_Mutation p.A852T 0.33 unknown(0) TCGA-HT-A5RC-01 22 32937651 32937651 C T SYN3 Missense_Mutation p.A275T 0.33 deleterious(0) unknown(0) TCGA-HT-A5RC-01 22 37471260 37471260 G A TMPRSS6 Silent p.A428A 0.39 TCGA-HT-A5RC-01 2 239009032 239009032 G A ESPNL 5'UTR 0.18 TCGA-HT-A5RC-01 2 241073371 241073371 C T MYEOV2 Missense_Mutation p.V70I 0.27 deleterious_low_confidence(0.02) benign(0.208) TCGA-HT-A5RC-01 2 26457128 26457128 A G HADHA Missense_Mutation p.I137T 0.31 deleterious(0) possibly_damaging(0.72) TCGA-HT-A5RC-01 3 121097685 121097685 G T STXBP5L Missense_Mutation p.A791S 0.31 tolerated(0.25) benign(0.06) TCGA-HT-A5RC-01 3 196730813 196730813 G A MFI2 Missense_Mutation p.A699V 0.34 tolerated(0.27) benign(0.005) TCGA-HT-A5RC-01 3 38674720 38674720 G A SCN5A Missense_Mutation p.R27C 0.30 deleterious(0.03) probably_damaging(0.961) TCGA-HT-A5RC-01 3 48629342 48629342 C T COL7A1 Missense_Mutation p.R449Q 0.56 unknown(0) TCGA-HT-A5RC-01 3 8590552 8590552 A G LMCD1 Missense_Mutation p.N229S 0.36 tolerated(0.44) probably_damaging(0.963) TCGA-HT-A5RC-01 4 69972927 69972927 C A UGT2B7 Missense_Mutation p.T346N 0.25 tolerated(0.09) benign(0.013) TCGA-HT-A5RC-01 4 8470099 8470099 G A TRMT44 Intron 0.31 TCGA-HT-A5RC-01 5 148622095 148622095 C T ABLIM3 Missense_Mutation p.R449W 0.08 deleterious(0) possibly_damaging(0.832) TCGA-HT-A5RC-01 5 160039781 160039781 G A ATP10B Silent p.T935T 0.19 TCGA-HT-A5RC-01 5 32235068 32235068 C T MTMR12 Missense_Mutation p.M504I 0.27 tolerated(0.89) benign(0.02) TCGA-HT-A5RC-01 6 155578065 155578065 C G TIAM2 Missense_Mutation p.A1639G 0.44 tolerated_low_confidence(0.19) benign(0.009) TCGA-HT-A5RC-01 6 32135153 32135153 G T EGFL8 Missense_Mutation p.A210S 0.45 tolerated(0.31) benign(0.002) TCGA-HT-A5RC-01 6 42975186 42975186 C T PPP2R5D Missense_Mutation p.S223F 0.33 deleterious(0) probably_damaging(0.994) TCGA-HT-A5RC-01 6 46800871 46800871 G A MEP1A Missense_Mutation p.R402H 0.32 deleterious(0) probably_damaging(1) TCGA-HT-A5RC-01 6 74228912 74228914 CAC - EEF1A1 In_Frame_Del p.G121del 0.28 TCGA-HT-A5RC-01 7 122759134 122759134 C T SLC13A1 Splice_Site p.X504_splice 0.18 TCGA-HT-A5RC-01 7 150324695 150324695 C T GIMAP6 3'UTR 0.23 TCGA-HT-A5RC-01 7 42006178 42006178 G A GLI3 Silent p.S831S 0.26 TCGA-HT-A5RC-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.42 deleterious(0) possibly_damaging(0.75) TCGA-HT-A5RC-01 7 63709527 63709527 G A ZNF679 Missense_Mutation p.R11Q 0.18 tolerated(0.57) benign(0.213) TCGA-HT-A5RC-01 7 72658498 72658498 G A GTF2IRD2P1 RNA 0.19 TCGA-HT-A5RC-01 8 66516499 66516499 C T ARMC1 3'UTR 0.38 TCGA-HT-A5RC-01 9 104356877 104356877 G A PPP3R2 Silent p.N112N 0.33 TCGA-HT-A5RC-01 9 130988317 130988317 G A DNM1 Intron 0.12 TCGA-HT-A5RC-01 X 10534972 10534972 C T MID1 Missense_Mutation p.D206N 0.30 tolerated(0.3) benign(0.442) TCGA-HT-A5RC-01 X 134156140 134156140 C T FAM127C 3'UTR 0.40 TCGA-HT-A5RC-01 X 152159280 152159280 C T PNMA5 Missense_Mutation p.R288H 0.32 tolerated(0.08) possibly_damaging(0.867) TCGA-HT-A5RC-01 X 19031906 19031906 G A GPR64 Missense_Mutation p.H333Y 0.34 tolerated(0.06) benign(0.102) TCGA-HT-A614-01 10 30318281 30318281 C T KIAA1462 Missense_Mutation p.A266T 0.09 tolerated(0.3) benign(0.33) TCGA-HT-A614-01 10 71160766 71160766 C T HK1 Nonsense_Mutation p.Q881* 0.31 TCGA-HT-A614-01 11 46431879 46431879 C G AMBRA1 Silent p.L962L 0.06 TCGA-HT-A614-01 11 47753113 47753113 C T FNBP4 Silent p.R607R 0.42 TCGA-HT-A614-01 11 59831748 59831748 G A MS4A3 Missense_Mutation p.G103E 0.08 deleterious(0) probably_damaging(1) TCGA-HT-A614-01 11 93090163 93090163 C T CCDC67 Missense_Mutation p.A84V 0.27 tolerated(0.1) benign(0.014) TCGA-HT-A614-01 12 27553705 27553705 A T ARNTL2 Missense_Mutation p.Q386H 0.51 deleterious(0) probably_damaging(0.985) TCGA-HT-A614-01 12 56222131 56222131 G T DNAJC14 Missense_Mutation p.D104E 0.03 tolerated_low_confidence(0.2) benign(0.016) TCGA-HT-A614-01 15 86076938 86076938 T C AKAP13 Missense_Mutation p.F102S 0.45 deleterious(0.04) probably_damaging(0.997) TCGA-HT-A614-01 16 84778248 84778248 A G USP10 Missense_Mutation p.Y54C 0.10 tolerated_low_confidence(0.11) benign(0.003) TCGA-HT-A614-01 16 85936599 85936599 C T IRF8 Intron 0.23 TCGA-HT-A614-01 17 10370011 10370011 G A MYH4 Nonsense_Mutation p.R18* 0.15 TCGA-HT-A614-01 17 26890508 26890508 G T PIGS Missense_Mutation p.Q137K 0.38 tolerated(0.74) benign(0.016) TCGA-HT-A614-01 17 38172560 38172560 C T CSF3 Silent p.P93P 0.50 TCGA-HT-A614-01 17 72699245 72699245 C G CD300LF Intron 0.21 TCGA-HT-A614-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.72 deleterious(0) probably_damaging(0.993) TCGA-HT-A614-01 17 81042688 81042688 G A METRNL Intron 0.40 TCGA-HT-A614-01 19 11095998 11095998 A G SMARCA4 Missense_Mutation p.N91S 0.28 benign(0.001) TCGA-HT-A614-01 19 38886276 38886276 G A SPRED3 Missense_Mutation p.A242T 0.75 tolerated(0.31) benign(0.043) TCGA-HT-A614-01 19 50154597 50154597 C T SCAF1 Silent p.D317D 0.17 TCGA-HT-A614-01 19 51330985 51330985 G A KLK15 Missense_Mutation p.R44C 0.35 deleterious(0) probably_damaging(0.976) TCGA-HT-A614-01 1 154295506 154295506 G A AQP10 Missense_Mutation p.R94H 0.10 tolerated(0.11) benign(0.052) TCGA-HT-A614-01 1 65268729 65268729 G T RAVER2 Missense_Mutation p.L392F 0.15 deleterious(0.05) benign(0.315) TCGA-HT-A614-01 1 67517761 67517761 G A SLC35D1 Missense_Mutation p.T109M 0.40 tolerated(0.24) benign(0.019) TCGA-HT-A614-01 21 46207992 46207992 G A UBE2G2 Missense_Mutation p.P21L 0.36 tolerated(0.3) probably_damaging(0.949) TCGA-HT-A614-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A614-01 2 21230419 21230419 G A APOB Silent p.N3107N 0.42 TCGA-HT-A614-01 2 241631760 241631760 G T AQP12A Silent p.L131L 0.28 TCGA-HT-A614-01 2 74652340 74652340 G A WDR54 Silent p.L258L 0.35 TCGA-HT-A614-01 3 21606071 21606071 A G ZNF385D Missense_Mutation p.S91P 0.07 deleterious(0) probably_damaging(0.976) TCGA-HT-A614-01 3 47704025 47704025 T C SMARCC1 Missense_Mutation p.T653A 0.07 deleterious(0.02) probably_damaging(0.913) TCGA-HT-A614-01 4 100349018 100349018 T A ADH7 Missense_Mutation p.K179M 0.12 deleterious(0) probably_damaging(0.998) TCGA-HT-A614-01 4 155241554 155241554 G A DCHS2 Missense_Mutation p.T1211M 0.31 tolerated(0.09) possibly_damaging(0.602) TCGA-HT-A614-01 4 24875312 24875312 T C CCDC149 Silent p.K85K 0.47 TCGA-HT-A614-01 4 69189859 69189859 G A YTHDC1 Nonsense_Mutation p.Q478* 0.12 TCGA-HT-A614-01 5 10748365 10748365 C T DAP Missense_Mutation p.R25Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-HT-A614-01 5 1243683 1243683 C T SLC6A18 Missense_Mutation p.P382L 0.18 deleterious(0) possibly_damaging(0.523) TCGA-HT-A614-01 5 158601111 158601111 A C RNF145 Missense_Mutation p.V256G 0.29 deleterious(0.03) possibly_damaging(0.593) TCGA-HT-A614-01 5 180218610 180218610 G A MGAT1 3'UTR 0.26 TCGA-HT-A614-01 6 157522460 157522460 A G ARID1B Missense_Mutation p.M1578V 0.04 benign(0.012) TCGA-HT-A614-01 7 143175752 143175752 G A TAS2R41 Missense_Mutation p.D263N 0.05 tolerated(0.54) benign(0.301) TCGA-HT-A614-01 7 38289056 38289056 T C TRGC2 Missense_Mutation p.D40G 0.44 deleterious(0.02) possibly_damaging(0.497) TCGA-HT-A614-01 9 12702411 12702414 ACAA - TYRP1 Frame_Shift_Del p.N353Vfs*31 0.76 TCGA-HT-A614-01 9 127933438 127933438 C T PPP6C Missense_Mutation p.D70N 0.39 deleterious(0.03) benign(0.059) TCGA-HT-A614-01 9 131768629 131768629 G A NUP188 Silent p.Q1685Q 0.09 TCGA-HT-A614-01 9 27109503 27109503 G T TEK 5'UTR 0.21 TCGA-HT-A614-01 9 27109541 27109541 G T TEK 5'UTR 0.29 TCGA-HT-A614-01 9 27109542 27109542 G A TEK 5'UTR 0.28 TCGA-HT-A614-01 X 57358192 57358192 C T FAAH2 Nonsense_Mutation p.R192* 0.79 TCGA-HT-A614-01 X 76938920 76938920 G A ATRX Nonsense_Mutation p.Q610* 0.73 TCGA-HT-A615-01 11 43343605 43343605 C T API5 Silent p.F154F 0.30 TCGA-HT-A615-01 11 48285528 48285528 G A OR4X1 Missense_Mutation p.G39D 0.27 deleterious(0) probably_damaging(0.983) TCGA-HT-A615-01 11 74351895 74351895 A G POLD3 3'UTR 0.50 TCGA-HT-A615-01 11 76873968 76873968 A G MYO7A Missense_Mutation p.K542E 0.38 deleterious(0) possibly_damaging(0.661) TCGA-HT-A615-01 12 10163315 10163315 T C CLEC12B 5'UTR 0.41 TCGA-HT-A615-01 12 109183011 109183011 T C SSH1 Missense_Mutation p.I635V 0.25 tolerated_low_confidence(0.66) benign(0.002) TCGA-HT-A615-01 13 38171320 38171320 C T POSTN Splice_Site p.X73_splice 0.46 TCGA-HT-A615-01 15 85149843 85149843 G A ZSCAN2 Intron 0.34 TCGA-HT-A615-01 16 4944606 4944606 C T PPL Missense_Mutation p.R419Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-HT-A615-01 16 80718589 80718589 G A CDYL2 Silent p.N154N 0.24 TCGA-HT-A615-01 17 34958397 34958397 T C MRM1 Missense_Mutation p.F53S 0.31 deleterious(0) probably_damaging(0.965) TCGA-HT-A615-01 19 4512847 4512847 G A PLIN4 Silent p.T361T 0.34 TCGA-HT-A615-01 19 45284225 45284225 C T CBLC Silent p.F139F 0.44 TCGA-HT-A615-01 19 56515295 56515295 C T NLRP5 Silent p.T92T 0.49 TCGA-HT-A615-01 1 153730172 153730172 A G INTS3 Missense_Mutation p.N361S 0.07 deleterious(0) probably_damaging(0.994) TCGA-HT-A615-01 1 158612230 158612230 C T SPTA1 Missense_Mutation p.A1570T 0.21 tolerated(0.11) benign(0.088) TCGA-HT-A615-01 1 193111017 193111017 G C CDC73 Missense_Mutation p.A184P 0.43 deleterious(0) probably_damaging(0.961) TCGA-HT-A615-01 1 229772950 229772950 A G URB2 Missense_Mutation p.I864V 0.35 tolerated(0.68) benign(0) TCGA-HT-A615-01 1 78444597 78444597 A - FUBP1 Frame_Shift_Del p.F31Sfs*23 0.38 TCGA-HT-A615-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A615-01 2 219544418 219544418 C T STK36 Missense_Mutation p.A305V 0.29 deleterious(0.01) possibly_damaging(0.502) TCGA-HT-A615-01 2 232135764 232135764 G C ARMC9 Missense_Mutation p.A397P 0.26 deleterious(0) probably_damaging(0.977) TCGA-HT-A615-01 3 111319659 111319659 C T CD96 Missense_Mutation p.P345S 0.29 tolerated(0.31) possibly_damaging(0.879) TCGA-HT-A615-01 4 126373545 126373545 C T FAT4 Missense_Mutation p.R3792W 0.22 probably_damaging(0.996) TCGA-HT-A615-01 4 20618726 20618726 G A SLIT2 Silent p.Q1347Q 0.09 TCGA-HT-A615-01 4 42414962 42414962 T C ATP8A1 Missense_Mutation p.T1156A 0.17 deleterious(0.01) probably_damaging(0.952) TCGA-HT-A615-01 5 1294250 1294250 C T TERT Missense_Mutation p.V251I 0.43 tolerated(0.43) benign(0.036) TCGA-HT-A615-01 5 154395557 154395557 G A KIF4B Missense_Mutation p.R713Q 0.29 deleterious(0.01) possibly_damaging(0.899) TCGA-HT-A615-01 6 117130562 117130562 G A GPRC6A Missense_Mutation p.P138L 0.25 deleterious(0) probably_damaging(0.998) TCGA-HT-A615-01 7 73770855 73770855 G A CLIP2 Missense_Mutation p.G307S 0.26 deleterious(0.04) probably_damaging(1) TCGA-HT-A615-01 8 145584537 145584537 G C SLC52A2 Silent p.G400G 0.07 TCGA-HT-A615-01 X 109416566 109416566 A C TMEM164 Missense_Mutation p.T261P 0.29 tolerated(0.21) benign(0.013) TCGA-HT-A615-01 X 11174686 11174686 C T ARHGAP6 Missense_Mutation p.V624M 0.32 deleterious(0) probably_damaging(0.963) TCGA-HT-A615-01 X 119669687 119669687 C G CUL4B Missense_Mutation p.E738Q 0.26 tolerated(0.36) benign(0.007) TCGA-HT-A615-01 X 151908875 151908875 G C CSAG1 Missense_Mutation p.R38S 0.06 deleterious_low_confidence(0.02) probably_damaging(0.943) TCGA-HT-A615-01 X 16142351 16142351 C T GRPR Missense_Mutation p.T92M 0.35 deleterious(0) probably_damaging(1) TCGA-HT-A615-01 X 22291550 22291550 G A ZNF645 Missense_Mutation p.A148T 0.40 tolerated(0.37) benign(0.003) TCGA-HT-A615-01 X 48830666 48830666 C T GRIPAP1 Missense_Mutation p.R822Q 0.25 benign(0.017) TCGA-HT-A615-01 X 64139085 64139085 C A ZC4H2 Splice_Site p.X133_splice 0.31 TCGA-HT-A615-01 X 69669655 69669655 C T DLG3 Nonsense_Mutation p.R217* 0.33 TCGA-HT-A616-01 10 70513778 70513779 - A CCAR1 Frame_Shift_Ins p.N432Kfs*6 0.32 TCGA-HT-A616-01 11 57480129 57480129 G A TMX2 Silent p.S13S 0.13 TCGA-HT-A616-01 12 63543861 63543861 C T AVPR1A Silent p.A252A 0.03 TCGA-HT-A616-01 14 96777876 96777877 CA - ATG2B Splice_Site p.X1330_splice 0.18 TCGA-HT-A616-01 15 39884880 39884880 C T THBS1 Nonsense_Mutation p.Q882* 0.32 TCGA-HT-A616-01 15 41146276 41146276 G A SPINT1 Missense_Mutation p.R327H 0.30 tolerated(0.97) benign(0) TCGA-HT-A616-01 15 62300864 62300864 C G VPS13C Missense_Mutation p.G370R 0.38 deleterious(0) benign(0.058) TCGA-HT-A616-01 16 58581553 58581553 A C CNOT1 Missense_Mutation p.F1186V 0.28 deleterious(0) benign(0.041) TCGA-HT-A616-01 17 27939276 27939276 T G ANKRD13B Missense_Mutation p.F415V 0.29 deleterious(0) probably_damaging(0.942) TCGA-HT-A616-01 17 66982397 66982397 C T ABCA9 Silent p.A1372A 0.06 TCGA-HT-A616-01 18 29126141 29126141 G C DSG2 Missense_Mutation p.R931T 0.45 tolerated(0.56) benign(0.009) TCGA-HT-A616-01 18 67695981 67695981 A C RTTN Silent p.L1934L 0.22 TCGA-HT-A616-01 19 22235408 22235408 A G ZNF257 5'UTR 0.05 TCGA-HT-A616-01 19 36293163 36293163 G T PRODH2 Silent p.G452G 0.08 TCGA-HT-A616-01 19 49573516 49573516 A G KCNA7 Missense_Mutation p.V392A 0.37 deleterious(0) probably_damaging(0.997) TCGA-HT-A616-01 19 50123629 50123629 C T PRR12 Silent p.L1840L 0.27 TCGA-HT-A616-01 1 109741239 109741239 C G KIAA1324 Missense_Mutation p.T815S 0.15 tolerated(0.08) benign(0.106) TCGA-HT-A616-01 1 152283229 152283229 G C FLG Missense_Mutation p.A1378G 0.03 possibly_damaging(0.694) TCGA-HT-A616-01 1 232650368 232650368 T C SIPA1L2 Missense_Mutation p.I240V 0.05 tolerated(0.74) benign(0.001) TCGA-HT-A616-01 1 36785522 36785522 G A SH3D21 Missense_Mutation p.V420M 0.07 tolerated(0.1) possibly_damaging(0.711) TCGA-HT-A616-01 2 179453926 179453926 A G TTN Silent p.Y20842Y 0.45 TCGA-HT-A616-01 2 179579894 179579894 G A TTN Silent p.H8673H 0.38 TCGA-HT-A616-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A616-01 2 28532995 28532995 C G BRE Intron 0.13 TCGA-HT-A616-01 3 107096617 107096617 C T CCDC54 Silent p.D61D 0.26 TCGA-HT-A616-01 5 150917494 150917494 C G FAT2 Missense_Mutation p.G3018A 0.05 benign(0.226) TCGA-HT-A616-01 6 44143857 44143857 G A CAPN11 Missense_Mutation p.G295E 0.24 deleterious(0) probably_damaging(0.999) TCGA-HT-A616-01 X 109694050 109694050 C G RGAG1 Missense_Mutation p.P69A 0.08 deleterious_low_confidence(0.03) benign(0.056) TCGA-HT-A616-01 X 135429890 135429890 C A GPR112 Missense_Mutation p.T1342N 0.04 tolerated(0.08) benign(0.003) TCGA-HT-A616-01 X 138711938 138711938 T A MCF2 Missense_Mutation p.E178D 0.36 tolerated(0.12) probably_damaging(0.983) TCGA-HT-A616-01 X 149938823 149938823 G A CD99L2 Silent p.Y225Y 0.35 TCGA-HT-A616-01 X 153195525 153195525 T C NAA10 Missense_Mutation p.D208G 0.04 deleterious(0) benign(0.077) TCGA-HT-A616-01 X 30260295 30260295 C T MAGEB4 Missense_Mutation p.R15C 0.22 deleterious(0.03) possibly_damaging(0.89) TCGA-HT-A616-01 X 76939697 76939697 C A ATRX Nonsense_Mutation p.E351* 0.36 TCGA-HT-A617-01 16 10524502 10524502 C T ATF7IP2 Missense_Mutation p.R9W 0.18 deleterious(0.01) benign(0.211) TCGA-HT-A617-01 16 68846137 68846137 G A CDH1 Missense_Mutation p.D370N 0.23 deleterious(0) probably_damaging(0.985) TCGA-HT-A617-01 17 37188187 37188187 G A CTD-2206N4.2 5'Flank 0.29 TCGA-HT-A617-01 17 37565209 37565209 C T MED1 Missense_Mutation p.V1089M 0.21 tolerated_low_confidence(0.06) unknown(0) TCGA-HT-A617-01 1 109716150 109716150 G A KIAA1324 Missense_Mutation p.V251I 0.15 tolerated(0.12) benign(0.292) TCGA-HT-A617-01 1 157490931 157490931 C T FCRL5 Silent p.S797S 0.20 TCGA-HT-A617-01 1 160181386 160181386 G T PEA15 Nonsense_Mutation p.E18* 0.12 TCGA-HT-A617-01 1 197611924 197611924 C T DENND1B Missense_Mutation p.V197M 0.16 deleterious(0.01) probably_damaging(1) TCGA-HT-A617-01 21 43916398 43916398 C T RSPH1 5'UTR 0.32 TCGA-HT-A617-01 22 32550285 32550285 G A C22orf42 Missense_Mutation p.R85C 0.12 deleterious(0.01) possibly_damaging(0.835) TCGA-HT-A617-01 2 128389239 128389239 C A MYO7B Missense_Mutation p.D1694E 0.06 deleterious(0) possibly_damaging(0.771) TCGA-HT-A617-01 2 179500810 179500810 C T TTN Missense_Mutation p.V13830I 0.18 TCGA-HT-A617-01 2 201478596 201478596 G A AOX1 Silent p.S506S 0.23 TCGA-HT-A617-01 2 206605324 206605324 C T NRP2 Missense_Mutation p.R410C 0.22 deleterious(0) probably_damaging(1) TCGA-HT-A617-01 2 70315908 70315908 G C PCBP1 Missense_Mutation p.A345P 0.24 deleterious(0.02) possibly_damaging(0.836) TCGA-HT-A617-01 3 42916689 42916689 C T CYP8B1 Missense_Mutation p.R207H 0.05 deleterious(0.03) probably_damaging(0.975) TCGA-HT-A617-01 3 52489675 52489675 C T NISCH Silent p.T6T 0.29 TCGA-HT-A617-01 4 123239396 123239396 C T KIAA1109 Missense_Mutation p.R3589C 0.10 probably_damaging(0.994) TCGA-HT-A617-01 4 151153904 151153904 A G DCLK2 Missense_Mutation p.Y514C 0.16 tolerated(0.06) benign(0.029) TCGA-HT-A617-01 4 2877687 2877687 G A ADD1 Silent p.P15P 0.13 TCGA-HT-A617-01 4 47850315 47850315 A T NFXL1 Silent p.R867R 0.16 TCGA-HT-A617-01 4 83417256 83417256 C T TMEM150C Missense_Mutation p.A110T 0.12 tolerated(0.19) benign(0.013) TCGA-HT-A617-01 5 65460676 65460676 T A SREK1 Missense_Mutation p.S318T 0.24 tolerated(0.11) unknown(0) TCGA-HT-A617-01 7 103132428 103132428 C T RELN Missense_Mutation p.V3139I 0.12 tolerated(0.1) benign(0.418) TCGA-HT-A617-01 7 136587948 136587948 G A CHRM2 Intron 0.09 TCGA-HT-A617-01 7 150840451 150840451 G A AGAP3 Missense_Mutation p.R766Q 0.16 deleterious(0) probably_damaging(0.947) TCGA-HT-A617-01 8 110468612 110468612 A G PKHD1L1 Silent p.T2332T 0.25 TCGA-HT-A617-01 8 36671862 36671862 G T KCNU1 Silent p.R290R 0.38 TCGA-HT-A617-01 9 137704486 137704486 C T COL5A1 Silent p.S1260S 0.27 TCGA-HT-A617-01 X 9900906 9900906 A G SHROOM2 Missense_Mutation p.T1195A 0.38 tolerated(0.8) benign(0.005) TCGA-HT-A618-01 10 71665540 71665540 C A COL13A1 Intron 0.18 TCGA-HT-A618-01 10 85984831 85984832 - G LRIT2 Frame_Shift_Ins p.G51Wfs*5 0.16 TCGA-HT-A618-01 11 117261724 117261724 A G CEP164 Silent p.Q692Q 0.12 TCGA-HT-A618-01 11 56310051 56310051 T C OR5M11 Missense_Mutation p.K228R 0.30 tolerated(1) benign(0.004) TCGA-HT-A618-01 11 57003704 57003704 G T APLNR Missense_Mutation p.L259M 0.09 tolerated(0.09) probably_damaging(0.951) TCGA-HT-A618-01 11 65408860 65408860 G A SIPA1 Silent p.S156S 0.27 TCGA-HT-A618-01 12 116457177 116457177 G T MED13L Silent p.I287I 0.23 TCGA-HT-A618-01 12 95914959 95914959 G A USP44 Nonsense_Mutation p.R585* 0.25 TCGA-HT-A618-01 14 71443880 71443880 A T PCNX Nonsense_Mutation p.K276* 0.23 TCGA-HT-A618-01 15 20636392 20636392 G A HERC2P3 RNA 0.14 TCGA-HT-A618-01 15 72040864 72040864 G A THSD4 Silent p.P782P 0.20 TCGA-HT-A618-01 16 61891032 61891032 G A CDH8 Missense_Mutation p.P220S 0.38 tolerated(0.19) possibly_damaging(0.512) TCGA-HT-A618-01 16 90160999 90160999 C T TUBB8P7 Intron 0.14 TCGA-HT-A618-01 17 73736512 73736512 C T ITGB4 Silent p.C840C 0.05 TCGA-HT-A618-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.76 deleterious(0) probably_damaging(0.997) TCGA-HT-A618-01 19 13941885 13941885 A C ZSWIM4 3'UTR 0.42 TCGA-HT-A618-01 19 6013017 6013017 C T RFX2 Silent p.Q293Q 0.18 TCGA-HT-A618-01 1 152282080 152282080 C T FLG Missense_Mutation p.R1761H 0.08 possibly_damaging(0.522) TCGA-HT-A618-01 1 248343709 248343709 G T OR2M2 Missense_Mutation p.C141F 0.04 deleterious(0) probably_damaging(0.987) TCGA-HT-A618-01 1 94480119 94480119 C A ABCA4 Nonsense_Mutation p.E1814* 0.16 TCGA-HT-A618-01 1 94480120 94480120 C A ABCA4 Missense_Mutation p.L1813F 0.16 deleterious(0) probably_damaging(1) TCGA-HT-A618-01 20 1146977 1146977 G A PSMF1 3'UTR 0.56 TCGA-HT-A618-01 20 60503304 60503304 G A CDH4 Missense_Mutation p.D610N 0.03 deleterious(0) probably_damaging(0.999) TCGA-HT-A618-01 2 21228468 21228468 C A APOB Missense_Mutation p.V3758F 0.17 benign(0.128) TCGA-HT-A618-01 2 238462421 238462421 C A MLPH 3'UTR 0.40 TCGA-HT-A618-01 2 27325300 27325300 T C CGREF1 Splice_Site p.X49_splice 0.07 TCGA-HT-A618-01 4 153244137 153244137 G A FBXW7 Missense_Mutation p.R674W 0.30 deleterious(0) probably_damaging(0.999) TCGA-HT-A618-01 4 2073954 2073954 G A POLN Missense_Mutation p.P864S 0.11 tolerated(0.18) benign(0.06) TCGA-HT-A618-01 4 2834097 2834097 T A SH3BP2 Missense_Mutation p.D539E 0.04 deleterious_low_confidence(0) benign(0.393) TCGA-HT-A618-01 7 100421497 100421497 C A EPHB4 Silent p.V60V 0.21 TCGA-HT-A618-01 7 82583285 82583285 G A PCLO Silent p.A2328A 0.13 TCGA-HT-A618-01 8 133192522 133192522 T C KCNQ3 Missense_Mutation p.N220S 0.08 deleterious(0.01) probably_damaging(0.951) TCGA-HT-A618-01 8 75756325 75756325 G A PI15 Missense_Mutation p.R128H 0.09 tolerated(1) probably_damaging(0.999) TCGA-HT-A618-01 9 18829917 18829917 G A ADAMTSL1 Silent p.V1397V 0.12 TCGA-HT-A618-01 X 76939387 76939387 T - ATRX Frame_Shift_Del p.K454Rfs*16 0.36 TCGA-HT-A619-01 10 11363187 11363187 G C CELF2 Missense_Mutation p.G378R 0.33 deleterious(0.04) probably_damaging(0.979) TCGA-HT-A619-01 10 127697871 127697871 T G FANK1 Intron 0.44 TCGA-HT-A619-01 11 1083749 1083749 G A MUC2 Missense_Mutation p.A761T 0.28 benign(0.093) TCGA-HT-A619-01 11 2337873 2337874 - G TSPAN32 Frame_Shift_Ins p.K234Qfs*45 0.36 TCGA-HT-A619-01 11 74904334 74904335 - TG SLCO2B1 Frame_Shift_Ins p.S384Cfs*205 0.41 TCGA-HT-A619-01 12 120151065 120151065 T C CIT Missense_Mutation p.K1508E 0.45 deleterious(0) possibly_damaging(0.888) TCGA-HT-A619-01 12 50037528 50037528 A G PRPF40B Missense_Mutation p.H812R 0.54 deleterious_low_confidence(0.03) possibly_damaging(0.774) TCGA-HT-A619-01 13 27239244 27239244 C G WASF3 Missense_Mutation p.D71E 0.26 tolerated(1) benign(0.042) TCGA-HT-A619-01 13 53624246 53624246 G A OLFM4 Silent p.A291A 0.45 TCGA-HT-A619-01 13 96592232 96592232 A G UGGT2 Silent p.S597S 0.33 TCGA-HT-A619-01 14 21458174 21458174 C T METTL17 Silent p.L5L 0.60 TCGA-HT-A619-01 14 56763754 56763754 C G PELI2 Missense_Mutation p.A378G 0.30 tolerated(0.06) possibly_damaging(0.612) TCGA-HT-A619-01 15 51289979 51289979 T C AP4E1 Missense_Mutation p.W935R 0.18 deleterious(0.01) possibly_damaging(0.795) TCGA-HT-A619-01 15 63935628 63935628 C T HERC1 Missense_Mutation p.G3769E 0.95 probably_damaging(1) TCGA-HT-A619-01 16 19547384 19547384 G A CCP110 Silent p.T131T 0.58 TCGA-HT-A619-01 16 3075763 3075763 G A THOC6 Missense_Mutation p.V32I 0.19 tolerated(0.07) benign(0.004) TCGA-HT-A619-01 16 67690171 67690171 G A RLTPR Silent p.S1261S 0.06 TCGA-HT-A619-01 16 74725174 74725174 C T MLKL Splice_Site p.X241_splice 0.46 TCGA-HT-A619-01 17 12655844 12655844 G A MYOCD Silent p.P413P 0.43 TCGA-HT-A619-01 17 27849514 27849514 C T TAOK1 Nonsense_Mutation p.R709* 0.42 TCGA-HT-A619-01 17 35913795 35913795 C T SYNRG Missense_Mutation p.G677E 0.38 tolerated_low_confidence(0.07) probably_damaging(1) TCGA-HT-A619-01 17 39595476 39595476 G C KRT38 Silent p.S237S 0.42 TCGA-HT-A619-01 19 18879357 18879357 G A CRTC1 Silent p.A374A 0.30 TCGA-HT-A619-01 19 42795608 42795609 - C CIC Frame_Shift_Ins p.K899Qfs*32 0.52 TCGA-HT-A619-01 19 9084076 9084076 G T MUC16 Missense_Mutation p.T2580K 0.10 unknown(0) TCGA-HT-A619-01 1 196748322 196748322 A C CFHR3 Missense_Mutation p.H30P 0.33 deleterious(0.01) possibly_damaging(0.743) TCGA-HT-A619-01 1 197521995 197521995 T A DENND1B 3'UTR 0.45 TCGA-HT-A619-01 1 44363948 44363948 C T ST3GAL3 Missense_Mutation p.R216C 0.82 deleterious(0.03) possibly_damaging(0.886) TCGA-HT-A619-01 20 30231298 30231298 T C COX4I2 Silent p.I113I 0.22 TCGA-HT-A619-01 22 25603098 25603098 C T CRYBB3 Silent p.D185D 0.07 TCGA-HT-A619-01 22 37499634 37499634 C T TMPRSS6 5'UTR 0.49 TCGA-HT-A619-01 2 108487540 108487540 C G RGPD4 Missense_Mutation p.A1027G 0.42 tolerated(0.47) benign(0.269) TCGA-HT-A619-01 2 183843586 183843586 T C NCKAP1 Missense_Mutation p.M473V 0.34 tolerated(0.09) benign(0.061) TCGA-HT-A619-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A619-01 2 27898498 27898498 G A SLC4A1AP Missense_Mutation p.R482H 0.45 deleterious(0.01) possibly_damaging(0.566) TCGA-HT-A619-01 2 37268400 37268400 C T HEATR5B Missense_Mutation p.G911D 0.25 deleterious(0) probably_damaging(0.998) TCGA-HT-A619-01 2 79312681 79312681 A G REG1B Missense_Mutation p.W124R 0.35 deleterious(0) probably_damaging(0.941) TCGA-HT-A619-01 3 110831116 110831116 A G PVRL3 Missense_Mutation p.T134A 0.51 tolerated(0.12) benign(0.06) TCGA-HT-A619-01 3 111685531 111685531 C T PHLDB2 Missense_Mutation p.T1050M 0.58 deleterious(0.02) benign(0.126) TCGA-HT-A619-01 3 124953096 124953096 G C ZNF148 Missense_Mutation p.H249D 0.41 deleterious(0) probably_damaging(0.999) TCGA-HT-A619-01 3 89259601 89259601 G A EPHA3 Missense_Mutation p.E249K 0.41 deleterious(0) benign(0.113) TCGA-HT-A619-01 4 110581405 110581405 C G CCDC109B Missense_Mutation p.S77C 0.58 deleterious(0) probably_damaging(0.996) TCGA-HT-A619-01 4 110884445 110884445 G A EGF Missense_Mutation p.A477T 0.38 tolerated(0.65) benign(0.002) TCGA-HT-A619-01 4 183959228 183959228 A G FAM92A1P2 RNA 0.62 TCGA-HT-A619-01 5 1219196 1219196 C T SLC6A19 Missense_Mutation p.P451L 0.07 deleterious(0.02) benign(0.108) TCGA-HT-A619-01 5 140176038 140176038 C T PCDHA2 Missense_Mutation p.R497W 0.04 deleterious_low_confidence(0) possibly_damaging(0.57) TCGA-HT-A619-01 5 140182696 140182696 C T PCDHA3 Silent p.D638D 0.07 TCGA-HT-A619-01 5 141693969 141693969 C T SPRY4 Nonsense_Mutation p.W258* 0.52 TCGA-HT-A619-01 5 16689996 16689996 C T MYO10 Missense_Mutation p.G1278E 0.18 deleterious(0) probably_damaging(1) TCGA-HT-A619-01 5 36985704 36985704 C T NIPBL Nonsense_Mutation p.R808* 0.42 TCGA-HT-A619-01 5 620335 620335 G A CEP72 Missense_Mutation p.R121H 0.37 deleterious(0) probably_damaging(0.999) TCGA-HT-A619-01 5 71495073 71495073 C G MAP1B Missense_Mutation p.T1964S 0.07 benign(0.179) TCGA-HT-A619-01 6 125584198 125584198 G A TPD52L1 3'UTR 0.30 TCGA-HT-A619-01 7 102453840 102453840 T G FBXL13 Missense_Mutation p.L719F 0.30 tolerated_low_confidence(0.09) benign(0.033) TCGA-HT-A619-01 7 120969426 120969426 C - WNT16 Frame_Shift_Del p.Q28Kfs*25 0.38 TCGA-HT-A619-01 7 123269087 123269088 GA - ASB15 Frame_Shift_Del p.D347Rfs*2 0.24 TCGA-HT-A619-01 7 142561054 142561054 G T EPHB6 Silent p.L23L 0.09 TCGA-HT-A619-01 7 149516518 149516518 G A SSPO RNA 0.15 TCGA-HT-A619-01 7 20767947 20767947 G A ABCB5 Silent p.S912S 0.26 TCGA-HT-A619-01 7 75517793 75517793 C G RHBDD2 3'UTR 0.34 TCGA-HT-A619-01 8 145773361 145773361 T C ARHGAP39 Missense_Mutation p.Q370R 0.50 tolerated(0.12) possibly_damaging(0.697) TCGA-HT-A619-01 8 24187513 24187513 C T ADAM28 Missense_Mutation p.L330F 0.05 tolerated(0.15) possibly_damaging(0.515) TCGA-HT-A619-01 8 26227744 26227761 AAGCCTCGCACAGTTCTG - PPP2R2A In_Frame_Del p.T400_R405del 0.33 TCGA-HT-A619-01 8 52233389 52233389 G A PXDNL Silent p.A1405A 0.52 TCGA-HT-A619-01 9 116356592 116356592 C T RGS3 Intron 0.43 TCGA-HT-A619-01 9 127572206 127572206 C T OLFML2A Missense_Mutation p.R492W 0.39 deleterious(0) possibly_damaging(0.898) TCGA-HT-A619-01 9 136507441 136507441 C G DBH Missense_Mutation p.P200R 0.35 deleterious(0.01) possibly_damaging(0.881) TCGA-HT-A61A-01 10 79777419 79777419 T C POLR3A Missense_Mutation p.I449V 0.14 tolerated(0.88) benign(0.012) TCGA-HT-A61A-01 13 32907165 32907165 A G BRCA2 Missense_Mutation p.N517S 0.08 tolerated(0.87) benign(0) TCGA-HT-A61A-01 14 74535667 74535667 C A ALDH6A1 Missense_Mutation p.D250Y 0.15 deleterious(0) probably_damaging(0.967) TCGA-HT-A61A-01 17 19213263 19213263 C G EPN2 Missense_Mutation p.L278V 0.08 deleterious(0) probably_damaging(0.998) TCGA-HT-A61A-01 19 57792178 57792178 G T ZNF460 Missense_Mutation p.A2S 0.08 deleterious(0.05) benign(0.147) TCGA-HT-A61A-01 2 31178596 31178596 C T GALNT14 Missense_Mutation p.R186Q 0.11 deleterious(0) probably_damaging(0.989) TCGA-HT-A61A-01 5 42699991 42699991 G T GHR Missense_Mutation p.A169S 0.11 tolerated(0.4) probably_damaging(0.998) TCGA-HT-A61A-01 6 138201287 138201287 C T TNFAIP3 Silent p.C662C 0.05 TCGA-HT-A61B-01 10 102541110 102541110 A G PAX2 Missense_Mutation p.K202E 0.12 deleterious(0.03) possibly_damaging(0.776) TCGA-HT-A61B-01 10 134219372 134219372 G A PWWP2B Silent p.S456S 0.36 TCGA-HT-A61B-01 10 43882166 43882166 G A HNRNPF Silent p.Y389Y 0.45 TCGA-HT-A61B-01 11 5444223 5444223 C T OR51Q1 Missense_Mutation p.R265C 0.36 deleterious(0.02) possibly_damaging(0.458) TCGA-HT-A61B-01 11 63884997 63884997 C T FLRT1 Missense_Mutation p.R420C 0.16 tolerated(0.06) possibly_damaging(0.764) TCGA-HT-A61B-01 12 126135302 126135302 G A TMEM132B Missense_Mutation p.A568T 0.11 tolerated(0.09) possibly_damaging(0.846) TCGA-HT-A61B-01 12 27467498 27467498 C T STK38L Silent p.Y193Y 0.16 TCGA-HT-A61B-01 14 35008834 35008834 T C EAPP Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0.441) TCGA-HT-A61B-01 16 11981588 11981589 - T GSPT1 Frame_Shift_Ins p.D266Rfs*11 0.20 TCGA-HT-A61B-01 16 89620236 89620236 C T SPG7 Silent p.I657I 0.23 TCGA-HT-A61B-01 17 7150176 7150176 T C CTDNEP1 Silent p.V98V 0.48 TCGA-HT-A61B-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.90 deleterious(0) probably_damaging(1) TCGA-HT-A61B-01 18 33738840 33738840 G T ELP2 Nonsense_Mutation p.G568* 0.56 TCGA-HT-A61B-01 19 18184406 18184406 T G IL12RB1 Missense_Mutation p.N235T 0.18 tolerated(0.44) benign(0.001) TCGA-HT-A61B-01 19 55255285 55255285 C T KIR2DL3 Missense_Mutation p.T138M 0.61 tolerated(0.24) benign(0.028) TCGA-HT-A61B-01 19 9577986 9577986 C T ZNF560 Missense_Mutation p.C546Y 0.43 deleterious(0) probably_damaging(0.98) TCGA-HT-A61B-01 1 111146564 111146564 C T KCNA2 Missense_Mutation p.A281T 0.03 tolerated(0.49) benign(0.002) TCGA-HT-A61B-01 1 201841994 201841994 A G IPO9 Missense_Mutation p.N872S 0.20 tolerated(0.32) benign(0.002) TCGA-HT-A61B-01 1 248458438 248458438 A G OR2T12 Missense_Mutation p.L148P 0.46 deleterious(0) possibly_damaging(0.866) TCGA-HT-A61B-01 1 3428609 3428609 C A MEGF6 Missense_Mutation p.A313S 0.50 deleterious(0.01) possibly_damaging(0.498) TCGA-HT-A61B-01 1 54661191 54661191 G T CYB5RL Nonsense_Mutation p.C33* 0.43 TCGA-HT-A61B-01 2 201876188 201876188 G A FAM126B Missense_Mutation p.A114V 0.38 tolerated(1) benign(0.021) TCGA-HT-A61B-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A61B-01 2 219868765 219868765 A T CCDC108 Missense_Mutation p.S1822T 0.49 tolerated(0.08) unknown(0) TCGA-HT-A61B-01 2 239040177 239040177 G A ESPNL Missense_Mutation p.R941H 0.08 deleterious(0.05) benign(0.192) TCGA-HT-A61B-01 2 27360157 27360157 G A C2orf53 Silent p.A347A 0.27 TCGA-HT-A61B-01 3 189604292 189604292 C T TP63 Missense_Mutation p.R487C 0.30 deleterious(0.01) probably_damaging(0.993) TCGA-HT-A61B-01 3 37396655 37396655 G T GOLGA4 Nonsense_Mutation p.E2229* 0.35 TCGA-HT-A61B-01 3 4699950 4699950 G A ITPR1 Missense_Mutation p.S365N 0.12 deleterious(0.04) benign(0.309) TCGA-HT-A61B-01 3 58190566 58190566 G C DNASE1L3 Missense_Mutation p.D121E 0.16 tolerated(0.09) probably_damaging(0.998) TCGA-HT-A61B-01 4 146560298 146560298 A G MMAA Missense_Mutation p.M3V 0.41 tolerated_low_confidence(0.58) benign(0) TCGA-HT-A61B-01 4 68935722 68935722 A C TMPRSS11F Missense_Mutation p.I173S 0.28 deleterious(0) probably_damaging(0.996) TCGA-HT-A61B-01 5 140167485 140167485 C T PCDHA1 Missense_Mutation p.A537V 0.05 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-HT-A61B-01 5 146657719 146657719 A G STK32A Missense_Mutation p.I29V 0.29 deleterious(0.04) probably_damaging(0.997) TCGA-HT-A61B-01 5 150947117 150947117 T C FAT2 Missense_Mutation p.N459S 0.37 benign(0.002) TCGA-HT-A61B-01 5 178996303 178996303 C T RUFY1 Silent p.S235S 0.03 TCGA-HT-A61B-01 5 21752319 21752319 G A CDH12 Nonsense_Mutation p.R638* 0.76 TCGA-HT-A61B-01 5 71593520 71593520 G C MRPS27 Missense_Mutation p.A54G 0.26 deleterious(0.02) possibly_damaging(0.902) TCGA-HT-A61B-01 6 25517626 25517626 A G LRRC16A Missense_Mutation p.I619M 0.36 deleterious(0) possibly_damaging(0.899) TCGA-HT-A61B-01 6 74331529 74331529 C G SLC17A5 Missense_Mutation p.E326Q 0.26 tolerated(0.58) benign(0.017) TCGA-HT-A61B-01 7 100363082 100363082 G T ZAN Missense_Mutation p.A1459S 0.25 unknown(0) TCGA-HT-A61B-01 7 30898919 30898919 T C FAM188B Missense_Mutation p.I575T 0.19 deleterious(0.01) benign(0.363) TCGA-HT-A61B-01 8 134145830 134145830 C G TG Missense_Mutation p.P2705R 0.18 tolerated(0.05) benign(0.055) TCGA-HT-A61B-01 8 134145854 134145854 C G TG Missense_Mutation p.A2713G 0.20 deleterious(0.03) benign(0.158) TCGA-HT-A61B-01 8 134488257 134488257 A G ST3GAL1 Missense_Mutation p.L4P 0.32 benign(0) TCGA-HT-A61B-01 9 135275446 135275446 G A TTF1 Missense_Mutation p.R523W 0.17 deleterious(0) probably_damaging(0.999) TCGA-HT-A61B-01 9 35741041 35741041 T C GBA2 Silent p.G269G 0.22 TCGA-HT-A61B-01 X 119694140 119694140 C G CUL4B Missense_Mutation p.E136D 0.23 deleterious_low_confidence(0.02) probably_damaging(0.952) TCGA-HT-A61C-01 11 56113534 56113534 A T OR8K1 Missense_Mutation p.H7L 0.33 tolerated_low_confidence(0.09) benign(0) TCGA-HT-A61C-01 11 6023641 6023641 G A OR56A4 Silent p.D246D 0.37 TCGA-HT-A61C-01 11 74085469 74085469 C T PGM2L1 Silent p.Q90Q 0.34 TCGA-HT-A61C-01 12 129283824 129283824 A T SLC15A4 Missense_Mutation p.M518K 0.40 deleterious(0) possibly_damaging(0.837) TCGA-HT-A61C-01 12 18891867 18891867 C T CAPZA3 Missense_Mutation p.A222V 0.29 tolerated(0.08) possibly_damaging(0.863) TCGA-HT-A61C-01 12 55252109 55252109 C T MUCL1 3'UTR 0.24 TCGA-HT-A61C-01 14 103802435 103802435 G A EIF5 Silent p.A45A 0.72 TCGA-HT-A61C-01 14 21884050 21884050 C T CHD8 Missense_Mutation p.R578H 0.52 deleterious(0) probably_damaging(0.984) TCGA-HT-A61C-01 15 101938646 101938646 C T PCSK6 Missense_Mutation p.R319Q 0.39 deleterious(0.04) benign(0.015) TCGA-HT-A61C-01 15 34150114 34150114 C T RYR3 Missense_Mutation p.T4714M 0.44 benign(0.269) TCGA-HT-A61C-01 16 15870006 15870006 C T MYH11 Missense_Mutation p.R280H 0.38 benign(0.006) TCGA-HT-A61C-01 17 10432347 10432347 C T MYH2 Missense_Mutation p.R1135Q 0.33 deleterious(0) probably_damaging(0.951) TCGA-HT-A61C-01 17 33520856 33520856 G A SLC35G3 Silent p.Y157Y 0.41 TCGA-HT-A61C-01 19 54742930 54742930 T C LILRA6 Missense_Mutation p.I449V 0.28 tolerated(0.12) benign(0.031) TCGA-HT-A61C-01 19 9076533 9076533 A G MUC16 Missense_Mutation p.I3638T 0.41 unknown(0) TCGA-HT-A61C-01 1 201186507 201186507 G A IGFN1 Missense_Mutation p.A3230T 0.46 possibly_damaging(0.766) TCGA-HT-A61C-01 1 201938725 201938725 C T TIMM17A 3'UTR 0.43 TCGA-HT-A61C-01 1 207640156 207640156 C T CR2 Missense_Mutation p.T115I 0.32 deleterious(0) probably_damaging(0.96) TCGA-HT-A61C-01 1 231472849 231472851 CCA - EXOC8 In_Frame_Del p.V214del 0.40 TCGA-HT-A61C-01 20 19998065 19998065 T A NAA20 Missense_Mutation p.C9S 0.27 deleterious(0.03) benign(0.017) TCGA-HT-A61C-01 20 3782703 3782703 C T CDC25B Missense_Mutation p.R352W 0.44 deleterious(0) probably_damaging(0.975) TCGA-HT-A61C-01 21 14982795 14982795 T A POTED Silent p.T82T 0.43 TCGA-HT-A61C-01 2 128384765 128384765 G A MYO7B Missense_Mutation p.R1421H 0.33 tolerated(0.08) benign(0.006) TCGA-HT-A61C-01 2 179468882 179468882 G A TTN Missense_Mutation p.R18178C 0.36 TCGA-HT-A61C-01 2 191537858 191537858 C G NAB1 Missense_Mutation p.P329A 0.31 tolerated(0.42) benign(0.209) TCGA-HT-A61C-01 2 37289163 37289163 G A HEATR5B Nonsense_Mutation p.R539* 0.36 TCGA-HT-A61C-01 2 65541089 65541089 T G SPRED2 Missense_Mutation p.Y268S 0.36 tolerated(0.4) possibly_damaging(0.764) TCGA-HT-A61C-01 3 178543531 178543531 G A KCNMB2 Missense_Mutation p.R71H 0.38 deleterious(0.01) benign(0.022) TCGA-HT-A61C-01 3 36875111 36875111 T C TRANK1 Missense_Mutation p.Q1944R 0.34 tolerated(0.92) benign(0.006) TCGA-HT-A61C-01 3 52825943 52825943 C T ITIH1 3'UTR 0.29 TCGA-HT-A61C-01 4 118006209 118006209 G A TRAM1L1 Missense_Mutation p.A114V 0.28 tolerated(0.78) benign(0.013) TCGA-HT-A61C-01 4 148555479 148555479 C T TMEM184C Missense_Mutation p.T404I 0.37 deleterious(0.01) probably_damaging(0.951) TCGA-HT-A61C-01 4 20525656 20525659 TTTA - SLIT2 Frame_Shift_Del p.I433Vfs*8 0.40 TCGA-HT-A61C-01 4 39325012 39325014 TCA - RFC1 In_Frame_Del p.D222del 0.31 TCGA-HT-A61C-01 4 70070287 70070287 C A UGT2B11 Missense_Mutation p.V391L 0.09 deleterious(0.02) probably_damaging(0.994) TCGA-HT-A61C-01 4 71275670 71275670 G A PROL1 Missense_Mutation p.A209T 0.31 tolerated_low_confidence(1) unknown(0) TCGA-HT-A61C-01 4 75938016 75938016 C A PARM1 Missense_Mutation p.A142D 0.08 deleterious(0.02) benign(0.017) TCGA-HT-A61C-01 5 129070795 129070795 C G ADAMTS19 Silent p.P1155P 0.32 TCGA-HT-A61C-01 5 150488109 150488109 A G ANXA6 Missense_Mutation p.F563L 0.37 deleterious(0.02) probably_damaging(0.93) TCGA-HT-A61C-01 7 116395440 116395440 G C MET Missense_Mutation p.G578A 0.30 tolerated(0.11) probably_damaging(0.999) TCGA-HT-A61C-01 7 116412045 116412045 T A MET Splice_Site p.X1028_splice 0.03 TCGA-HT-A61C-01 7 120381623 120381623 C G KCND2 Missense_Mutation p.S438R 0.20 tolerated(0.17) benign(0.165) TCGA-HT-A61C-01 7 127240253 127240253 G C FSCN3 Missense_Mutation p.G433R 0.18 deleterious(0.05) possibly_damaging(0.499) TCGA-HT-A61C-01 7 55221743 55221743 A C EGFR Missense_Mutation p.T263P 0.24 tolerated(0.19) possibly_damaging(0.826) TCGA-HT-A61C-01 8 21608324 21608324 C T GFRA2 Silent p.S190S 0.41 TCGA-HT-A61C-01 8 62556552 62556552 C A ASPH Missense_Mutation p.D221Y 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-HT-A61C-01 8 94828614 94828614 C T TMEM67 Silent p.I974I 0.24 TCGA-HT-A61C-01 9 117005792 117005792 G C COL27A1 Missense_Mutation p.Q962H 0.40 unknown(0) TCGA-HT-A61C-01 9 139815579 139815579 C T TRAF2 Silent p.Y350Y 0.45 TCGA-HT-A74H-01 10 3189439 3189439 G A PITRM1 Missense_Mutation p.R748W 0.07 deleterious(0.01) possibly_damaging(0.846) TCGA-HT-A74H-01 10 85903820 85903820 G T GHITM Missense_Mutation p.G100V 0.21 deleterious(0) probably_damaging(1) TCGA-HT-A74H-01 11 111407383 111407383 C G C11orf88 Intron 0.31 TCGA-HT-A74H-01 11 55433101 55433101 C T OR4C6 Silent p.H153H 0.22 TCGA-HT-A74H-01 12 106632792 106632792 C T CKAP4 3'UTR 0.17 TCGA-HT-A74H-01 12 11461396 11461396 C T PRB4 Missense_Mutation p.R174Q 0.23 tolerated_low_confidence(1) unknown(0) TCGA-HT-A74H-01 12 40345131 40345131 G A SLC2A13 Missense_Mutation p.P321L 0.10 deleterious(0.05) possibly_damaging(0.824) TCGA-HT-A74H-01 12 57556127 57556127 C T LRP1 Missense_Mutation p.H744Y 0.21 possibly_damaging(0.843) TCGA-HT-A74H-01 12 96180767 96180767 C T NTN4 Missense_Mutation p.A179T 0.14 tolerated(0.05) possibly_damaging(0.746) TCGA-HT-A74H-01 13 46357873 46357873 G A SIAH3 Missense_Mutation p.A152V 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-HT-A74H-01 14 105622205 105622205 G A JAG2 Silent p.D199D 0.18 TCGA-HT-A74H-01 14 22102278 22102278 G A OR10G2 Missense_Mutation p.R241W 0.11 deleterious(0) benign(0.159) TCGA-HT-A74H-01 14 22592243 22592243 G A TRAV26-1 Silent p.%3D 0.27 TCGA-HT-A74H-01 16 75127493 75127493 A G ZNRF1 Missense_Mutation p.K150E 0.25 deleterious(0) probably_damaging(0.928) TCGA-HT-A74H-01 17 12666860 12666860 G A MYOCD Missense_Mutation p.A954T 0.22 tolerated(0.2) benign(0.102) TCGA-HT-A74H-01 17 26816242 26816242 G A SLC13A2 Missense_Mutation p.C38Y 0.24 deleterious(0) probably_damaging(0.994) TCGA-HT-A74H-01 17 33767661 33767661 T A SLFN13 Missense_Mutation p.I883F 0.18 deleterious(0.03) benign(0.074) TCGA-HT-A74H-01 17 38933308 38933308 A C KRT27 Silent p.T441T 0.24 TCGA-HT-A74H-01 17 41063169 41063169 C T G6PC Missense_Mutation p.T267M 0.12 tolerated(0.07) possibly_damaging(0.65) TCGA-HT-A74H-01 17 62131666 62131666 T G ERN1 Missense_Mutation p.K633Q 0.24 tolerated(0.23) benign(0.001) TCGA-HT-A74H-01 17 79059507 79059507 G A BAIAP2 Silent p.L111L 0.27 TCGA-HT-A74H-01 18 13826283 13826283 C T MC5R Silent p.C173C 0.21 TCGA-HT-A74H-01 18 13884771 13884771 G T MC2R Silent p.P249P 0.19 TCGA-HT-A74H-01 19 10224746 10224746 G A PPAN-P2RY11 Missense_Mutation p.G573S 0.22 deleterious_low_confidence(0.02) benign(0.023) TCGA-HT-A74H-01 19 40900052 40900052 C T PRX Missense_Mutation p.V1403I 0.15 tolerated(0.58) benign(0) TCGA-HT-A74H-01 19 55451248 55451248 C T NLRP7 Silent p.A313A 0.18 TCGA-HT-A74H-01 19 56307589 56307589 G A NLRP11 Silent p.S733S 0.18 TCGA-HT-A74H-01 19 57802451 57802451 G T ZNF460 Missense_Mutation p.C181F 0.17 tolerated(0.22) benign(0.015) TCGA-HT-A74H-01 1 152326021 152326021 G T FLG2 Missense_Mutation p.S1414Y 0.18 possibly_damaging(0.857) TCGA-HT-A74H-01 1 209788707 209788707 C T LAMB3 Missense_Mutation p.R1143H 0.22 deleterious(0) possibly_damaging(0.847) TCGA-HT-A74H-01 1 22923871 22923871 C T EPHA8 Missense_Mutation p.A611V 0.15 tolerated(0.6) benign(0.001) TCGA-HT-A74H-01 1 237777418 237777418 G A RYR2 Missense_Mutation p.V1664I 0.29 benign(0.006) TCGA-HT-A74H-01 1 52252272 52252272 C T OSBPL9 Silent p.N671N 0.20 TCGA-HT-A74H-01 1 70779456 70779456 T C ANKRD13C Silent p.L227L 0.20 TCGA-HT-A74H-01 21 44949704 44949704 C T HSF2BP Missense_Mutation p.R312H 0.33 tolerated(0.09) benign(0.361) TCGA-HT-A74H-01 22 19213787 19213787 A G CLTCL1 Silent p.Y634Y 0.18 TCGA-HT-A74H-01 22 31845480 31845480 G A EIF4ENIF1 Missense_Mutation p.S541F 0.10 deleterious(0.02) possibly_damaging(0.77) TCGA-HT-A74H-01 22 50659379 50659379 C T TUBGCP6 Missense_Mutation p.V1137M 0.20 tolerated(0.07) unknown(0) TCGA-HT-A74H-01 2 170093742 170093742 C T LRP2 Missense_Mutation p.R1521H 0.24 probably_damaging(0.964) TCGA-HT-A74H-01 2 233899438 233899438 T G NEU2 Missense_Mutation p.C272G 0.28 deleterious(0.04) probably_damaging(1) TCGA-HT-A74H-01 2 71305460 71305460 C T NAGK Missense_Mutation p.A332V 0.16 tolerated(0.98) benign(0.004) TCGA-HT-A74H-01 3 102187849 102187849 G A ZPLD1 Missense_Mutation p.R284Q 0.14 tolerated(0.26) benign(0.096) TCGA-HT-A74H-01 3 126749159 126749159 C T PLXNA1 Missense_Mutation p.P1712L 0.21 deleterious(0) benign(0.399) TCGA-HT-A74H-01 3 133653476 133653476 C T SLCO2A1 3'UTR 0.25 TCGA-HT-A74H-01 3 47161888 47161891 CTCT - SETD2 Frame_Shift_Del p.E1412Vfs*19 0.20 TCGA-HT-A74H-01 4 126355498 126355498 A G FAT4 Missense_Mutation p.I2373V 0.22 benign(0.075) TCGA-HT-A74H-01 4 20706100 20706100 A C PACRGL 5'UTR 0.15 TCGA-HT-A74H-01 4 42626599 42626600 AA - ATP8A1 Frame_Shift_Del p.L106Ifs*16 0.16 TCGA-HT-A74H-01 4 77661986 77661986 G A SHROOM3 Missense_Mutation p.R887H 0.23 deleterious(0) probably_damaging(0.995) TCGA-HT-A74H-01 5 134102743 134102743 G A DDX46 Missense_Mutation p.E115K 0.07 tolerated(0.42) possibly_damaging(0.636) TCGA-HT-A74H-01 5 140215578 140215578 C T PCDHA7 Missense_Mutation p.A537V 0.23 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-HT-A74H-01 5 170345766 170345766 G A RANBP17 Missense_Mutation p.R335H 0.18 deleterious(0.01) benign(0.002) TCGA-HT-A74H-01 5 413482 413482 C T AHRR Silent p.V129V 0.21 TCGA-HT-A74H-01 5 67576786 67576789 ATAG - PIK3R1 Frame_Shift_Del p.I290Kfs*3 0.18 TCGA-HT-A74H-01 6 144167303 144167303 C A LTV1 Nonsense_Mutation p.S84* 0.11 TCGA-HT-A74H-01 7 100681032 100681032 C T MUC17 Missense_Mutation p.T2112M 0.13 unknown(0) TCGA-HT-A74H-01 7 133602453 133602453 G A EXOC4 Silent p.Q663Q 0.16 TCGA-HT-A74H-01 7 139741471 139741471 A - PARP12 Frame_Shift_Del p.F385Lfs*16 0.12 TCGA-HT-A74H-01 7 50468070 50468070 C T IKZF1 Silent p.Y393Y 0.19 TCGA-HT-A74H-01 7 97922748 97922748 G A BAIAP2L1 3'UTR 0.06 TCGA-HT-A74H-01 8 113353895 113353895 T A CSMD3 Missense_Mutation p.N2155Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-HT-A74H-01 8 145094826 145094826 G A SPATC1 Silent p.P76P 0.21 TCGA-HT-A74H-01 9 79318298 79318298 T C PRUNE2 Missense_Mutation p.E2744G 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-HT-A74H-01 X 151303923 151303923 G A MAGEA10 Missense_Mutation p.S57F 0.43 tolerated(0.45) benign(0.04) TCGA-HT-A74H-01 X 6451822 6451822 A T VCX3A Missense_Mutation p.S175R 0.22 tolerated(0.19) unknown(0) TCGA-HT-A74H-01 X 75649650 75649650 G A MAGEE1 Missense_Mutation p.V443M 0.50 deleterious(0.04) benign(0.197) TCGA-HT-A74J-01 10 51465603 51465603 A C AGAP7 Missense_Mutation p.C285G 0.07 tolerated(0.05) benign(0) TCGA-HT-A74J-01 11 126283484 126283484 G A ST3GAL4 Missense_Mutation p.A286T 0.46 tolerated(0.51) benign(0.003) TCGA-HT-A74J-01 11 65650804 65650804 A C CTSW Missense_Mutation p.E310A 0.38 tolerated(0.6) benign(0.01) TCGA-HT-A74J-01 11 71152482 71152482 A C DHCR7 Silent p.V139V 0.30 TCGA-HT-A74J-01 13 52676316 52676316 T G NEK5 Missense_Mutation p.Q241P 0.07 deleterious(0) benign(0.012) TCGA-HT-A74J-01 16 31766535 31766535 A T ZNF720 Intron 0.33 TCGA-HT-A74J-01 17 48703526 48703526 G A CACNA1G Missense_Mutation p.S2183N 0.10 tolerated(0.7) benign(0.001) TCGA-HT-A74J-01 17 56395723 56395723 G A BZRAP1 Missense_Mutation p.T597I 0.06 deleterious(0.04) benign(0.064) TCGA-HT-A74J-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.76 TCGA-HT-A74J-01 1 22016507 22016507 C T USP48 Missense_Mutation p.G990D 0.47 deleterious(0) possibly_damaging(0.505) TCGA-HT-A74J-01 1 222827800 222827800 T C MIA3 Missense_Mutation p.S1483P 0.31 deleterious(0) probably_damaging(0.995) TCGA-HT-A74J-01 1 234509498 234509498 C T COA6 Missense_Mutation p.R12C 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-HT-A74J-01 1 24696194 24696194 C A STPG1 Missense_Mutation p.C236F 0.07 tolerated(0.7) benign(0.079) TCGA-HT-A74J-01 20 43042409 43042409 C T HNF4A Missense_Mutation p.A154V 0.25 tolerated(0.91) benign(0.004) TCGA-HT-A74J-01 20 47648590 47648590 T C ARFGEF2 Missense_Mutation p.C1690R 0.09 deleterious(0.02) possibly_damaging(0.707) TCGA-HT-A74J-01 22 41919937 41919937 T C ACO2 Missense_Mutation p.S492P 0.54 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-HT-A74J-01 2 203165048 203165048 A G NOP58 Missense_Mutation p.I454V 0.08 tolerated(0.5) benign(0) TCGA-HT-A74J-01 2 207173877 207173877 A G ZDBF2 Missense_Mutation p.D1542G 0.32 tolerated(0.05) possibly_damaging(0.539) TCGA-HT-A74J-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A74J-01 3 41274830 41274830 A G CTNNB1 Splice_Site p.X361_splice 0.12 TCGA-HT-A74J-01 3 47957593 47957593 T C MAP4 Missense_Mutation p.D575G 0.36 deleterious(0.02) benign(0.354) TCGA-HT-A74J-01 3 9476055 9476055 C T SETD5 Missense_Mutation p.S72L 0.09 tolerated(0.11) benign(0.004) TCGA-HT-A74J-01 4 186444566 186444566 C T PDLIM3 Missense_Mutation p.E94K 0.30 deleterious(0.01) possibly_damaging(0.833) TCGA-HT-A74J-01 4 186444599 186444599 C T PDLIM3 Missense_Mutation p.G83R 0.26 deleterious(0.02) benign(0.04) TCGA-HT-A74J-01 6 165863791 165863791 C G PDE10A Silent p.R95R 0.39 TCGA-HT-A74J-01 7 100732118 100732118 C T TRIM56 Missense_Mutation p.R509W 0.32 deleterious(0) probably_damaging(0.994) TCGA-HT-A74J-01 8 101542045 101542045 A G ANKRD46 Missense_Mutation p.V6A 0.05 deleterious_low_confidence(0) benign(0.153) TCGA-HT-A74J-01 9 6499916 6499916 A G UHRF2 Missense_Mutation p.R664G 0.41 tolerated(0.08) probably_damaging(0.942) TCGA-HT-A74J-01 X 18913286 18913286 A T PHKA2 Silent p.G1102G 0.27 TCGA-HT-A74J-01 X 76938029 76938029 G A ATRX Nonsense_Mutation p.R907* 0.82 TCGA-HT-A74K-01 10 16941019 16941019 T C CUBN Silent p.G2858G 0.33 TCGA-HT-A74K-01 11 55890648 55890648 C T OR8H3 Missense_Mutation p.S267F 0.21 deleterious(0.01) probably_damaging(0.961) TCGA-HT-A74K-01 12 122812878 122812878 T C CLIP1 Missense_Mutation p.Q988R 0.42 tolerated(0.14) possibly_damaging(0.688) TCGA-HT-A74K-01 12 81503360 81503360 C T ACSS3 Silent p.N111N 0.37 TCGA-HT-A74K-01 13 32907209 32907209 G A BRCA2 Missense_Mutation p.E532K 0.28 tolerated(0.22) benign(0.037) TCGA-HT-A74K-01 16 67263470 67263470 G A FHOD1 3'UTR 0.29 TCGA-HT-A74K-01 17 36104728 36104728 G T HNF1B Missense_Mutation p.P50T 0.29 deleterious(0.01) probably_damaging(1) TCGA-HT-A74K-01 19 23544148 23544148 G C ZNF91 Missense_Mutation p.P545A 0.27 deleterious(0.01) benign(0.015) TCGA-HT-A74K-01 19 48953645 48953645 C T GRWD1 Missense_Mutation p.R182W 0.29 deleterious(0.01) benign(0.339) TCGA-HT-A74K-01 1 109815272 109815272 G A CELSR2 Missense_Mutation p.A2689T 0.11 tolerated(0.67) benign(0.001) TCGA-HT-A74K-01 1 151263250 151263250 G A ZNF687 Silent p.T1093T 0.46 TCGA-HT-A74K-01 1 158450457 158450457 C T OR10R2 Missense_Mutation p.H264Y 0.35 deleterious(0) probably_damaging(1) TCGA-HT-A74K-01 1 178427644 178427644 A G RASAL2 Missense_Mutation p.K1073E 0.36 tolerated(0.17) benign(0.364) TCGA-HT-A74K-01 1 223178729 223178729 G A DISP1 Silent p.T1330T 0.19 TCGA-HT-A74K-01 1 228511247 228511247 C T OBSCN Missense_Mutation p.R6155C 0.54 probably_damaging(0.999) TCGA-HT-A74K-01 1 248637377 248637377 C T OR2T3 Silent p.A242A 0.42 TCGA-HT-A74K-01 1 65871611 65871611 G A DNAJC6 Silent p.P762P 0.72 TCGA-HT-A74K-01 21 10943011 10943011 A T TPTE Missense_Mutation p.H192Q 0.13 tolerated(0.32) benign(0.079) TCGA-HT-A74K-01 22 35659135 35659136 - A HMGXB4 Frame_Shift_Ins p.R35Tfs*28 0.24 TCGA-HT-A74K-01 22 39222725 39222726 - CATCT NPTXR Frame_Shift_Ins p.A293Efs*62 0.22 TCGA-HT-A74K-01 22 41257114 41257115 - T DNAJB7 Frame_Shift_Ins p.K296Efs*3 0.26 TCGA-HT-A74K-01 2 162881325 162881325 T C DPP4 Missense_Mutation p.N338D 0.43 tolerated(0.76) benign(0.001) TCGA-HT-A74K-01 2 17998326 17998326 C A MSGN1 Missense_Mutation p.L181I 0.46 tolerated(0.24) benign(0.287) TCGA-HT-A74K-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A74K-01 2 211019256 211019256 A G KANSL1L Silent p.S17S 0.05 TCGA-HT-A74K-01 2 71871141 71871141 G A DYSF Missense_Mutation p.G1525E 0.27 deleterious(0.02) possibly_damaging(0.845) TCGA-HT-A74K-01 2 74595107 74595107 C T DCTN1 Missense_Mutation p.R669H 0.21 tolerated(0.09) possibly_damaging(0.873) TCGA-HT-A74K-01 3 179336258 179336258 A G NDUFB5 Missense_Mutation p.Y133C 0.24 deleterious(0) probably_damaging(1) TCGA-HT-A74K-01 3 97806631 97806631 T A OR5AC2 Silent p.G205G 0.47 TCGA-HT-A74K-01 4 69433683 69433683 G A UGT2B17 Missense_Mutation p.R174C 0.05 deleterious(0) benign(0.295) TCGA-HT-A74K-01 5 32724855 32724855 C T NPR3 Missense_Mutation p.A274V 0.45 tolerated(0.09) benign(0.313) TCGA-HT-A74K-01 5 67589156 67589158 AAA - PIK3R1 In_Frame_Del p.K382del 0.33 TCGA-HT-A74K-01 6 117593623 117593623 G A VGLL2 Missense_Mutation p.R307H 0.33 deleterious(0.04) possibly_damaging(0.791) TCGA-HT-A74K-01 6 139186182 139186182 C G ECT2L Missense_Mutation p.I447M 0.26 tolerated(0.12) benign(0.234) TCGA-HT-A74K-01 6 656483 656483 G A HUS1B Silent p.D154D 0.23 TCGA-HT-A74K-01 7 44575860 44575860 C T NPC1L1 Missense_Mutation p.A617T 0.05 deleterious(0) possibly_damaging(0.839) TCGA-HT-A74K-01 7 97821950 97821950 T G LMTK2 Missense_Mutation p.F725V 0.17 deleterious(0) probably_damaging(0.999) TCGA-HT-A74K-01 8 41798681 41798681 T C KAT6A Silent p.S906S 0.37 TCGA-HT-A74K-01 9 136901336 136901336 T C BRD3 Missense_Mutation p.N585S 0.30 deleterious(0.01) probably_damaging(0.952) TCGA-HT-A74K-01 X 108911384 108911384 T C ACSL4 Missense_Mutation p.I462V 0.04 tolerated(1) benign(0.003) TCGA-HT-A74L-01 10 116049184 116049184 C T VWA2 Silent p.I686I 0.32 TCGA-HT-A74L-01 10 53893606 53893606 T C PRKG1 Silent p.D314D 0.35 TCGA-HT-A74L-01 11 56185335 56185335 G A OR5R1 Missense_Mutation p.A125V 0.41 deleterious(0) probably_damaging(0.997) TCGA-HT-A74L-01 12 117701762 117701762 C T NOS1 Silent p.T718T 0.05 TCGA-HT-A74L-01 18 10487787 10487787 G A APCDD1 Missense_Mutation p.G433R 0.61 deleterious(0.03) possibly_damaging(0.899) TCGA-HT-A74L-01 18 197675 197675 A G USP14 Missense_Mutation p.I218M 0.07 tolerated(0.1) benign(0.285) TCGA-HT-A74L-01 19 9089879 9089879 C T MUC16 Missense_Mutation p.G646S 0.38 unknown(0) TCGA-HT-A74L-01 1 160786485 160786485 G A LY9 Missense_Mutation p.V392I 0.08 deleterious(0) probably_damaging(0.999) TCGA-HT-A74L-01 1 245005361 245005361 G C COX20 Splice_Site p.X53_splice 0.25 TCGA-HT-A74L-01 1 33235364 33235364 C T KIAA1522 Missense_Mutation p.P226L 0.64 deleterious(0) unknown(0) TCGA-HT-A74L-01 1 39924150 39924150 C T MACF1 Missense_Mutation p.R5003C 0.89 probably_damaging(0.975) TCGA-HT-A74L-01 20 43532703 43532703 A G YWHAB Missense_Mutation p.K124E 0.34 deleterious_low_confidence(0.02) probably_damaging(0.939) TCGA-HT-A74L-01 2 171259406 171259406 C T MYO3B Silent p.F726F 0.44 TCGA-HT-A74L-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HT-A74L-01 3 160149454 160149454 T A SMC4 Silent p.P1046P 0.43 TCGA-HT-A74L-01 3 38317561 38317561 G T SLC22A13 Missense_Mutation p.C404F 0.57 deleterious(0) probably_damaging(0.961) TCGA-HT-A74L-01 4 110972670 110972670 T G ELOVL6 Missense_Mutation p.M208L 0.35 tolerated(0.32) benign(0.001) TCGA-HT-A74L-01 9 35801065 35801065 A G NPR2 Splice_Site p.X451_splice 0.40 TCGA-HT-A74O-01 11 123988900 123988900 G A VWA5A Missense_Mutation p.R84H 0.06 tolerated(0.91) benign(0.031) TCGA-HT-A74O-01 11 55889935 55889935 T A OR8H3 Missense_Mutation p.F29L 0.35 deleterious(0) possibly_damaging(0.703) TCGA-HT-A74O-01 12 75763881 75763881 G C GLIPR1L1 Missense_Mutation p.K209N 0.33 tolerated(0.62) benign(0.001) TCGA-HT-A74O-01 16 67210813 67210813 G A KIAA0895L Silent p.H439H 0.07 TCGA-HT-A74O-01 17 73567853 73567853 G A LLGL2 Missense_Mutation p.R761Q 0.33 tolerated(0.41) benign(0.043) TCGA-HT-A74O-01 17 7578547 7578549 GGG - TP53 In_Frame_Del p.P128del 0.66 TCGA-HT-A74O-01 19 30935438 30935438 C T ZNF536 Silent p.H323H 0.03 TCGA-HT-A74O-01 19 6702552 6702552 C T C3 Missense_Mutation p.V762I 0.04 tolerated(0.74) benign(0) TCGA-HT-A74O-01 19 6718337 6718337 C G C3 Missense_Mutation p.E118D 0.05 deleterious(0.02) benign(0.417) TCGA-HT-A74O-01 19 804864 804864 C G PTBP1 Missense_Mutation p.I214M 0.08 deleterious(0) probably_damaging(0.998) TCGA-HT-A74O-01 19 9057506 9057506 C A MUC16 Missense_Mutation p.L9980F 0.05 unknown(0) TCGA-HT-A74O-01 1 180240728 180240728 G A LHX4 Intron 0.10 TCGA-HT-A74O-01 1 231079620 231079620 G C TTC13 Missense_Mutation p.L202V 0.08 tolerated(0.21) possibly_damaging(0.556) TCGA-HT-A74O-01 1 42048550 42048550 C A HIVEP3 Missense_Mutation p.G640V 0.05 probably_damaging(1) TCGA-HT-A74O-01 20 34451082 34451082 C T PHF20 Nonsense_Mutation p.R190* 0.16 TCGA-HT-A74O-01 2 172945092 172945092 G A METAP1D Silent p.S322S 0.09 TCGA-HT-A74O-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.48 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-HT-A74O-01 2 70314852 70314852 C T PCBP1 5'UTR 0.36 TCGA-HT-A74O-01 2 97853077 97853077 C T ANKRD36 Silent p.D694D 0.33 TCGA-HT-A74O-01 3 143708448 143708448 G A C3orf58 Missense_Mutation p.R353H 0.08 tolerated(0.43) benign(0.095) TCGA-HT-A74O-01 3 195935376 195935376 C T ZDHHC19 Missense_Mutation p.R155H 0.40 deleterious(0) probably_damaging(0.994) TCGA-HT-A74O-01 3 50405102 50405102 G A CACNA2D2 Silent p.D763D 0.50 TCGA-HT-A74O-01 7 29160567 29160567 T C CPVL Silent p.G37G 0.05 TCGA-HT-A74O-01 7 80457916 80457916 A G SEMA3C Silent p.S83S 0.47 TCGA-HT-A74O-01 8 69009322 69009322 C A PREX2 Missense_Mutation p.D813E 0.07 deleterious(0.03) probably_damaging(0.984) TCGA-HT-A74O-01 9 91090141 91090141 G C SPIN1 Missense_Mutation p.K246N 0.40 deleterious(0) probably_damaging(0.992) TCGA-HT-A74O-01 9 97177508 97177508 G T HIATL1 Missense_Mutation p.W59C 0.29 deleterious(0) probably_damaging(0.999) TCGA-HT-A74O-01 X 76888722 76888725 TTTC - ATRX Frame_Shift_Del p.E1702Yfs*22 0.81 TCGA-HW-7486-01 15 34517776 34517776 C G EMC4 Silent p.L42L 0.34 TCGA-HW-7486-01 16 23160170 23160170 G A USP31 Missense_Mutation p.A141V 0.19 deleterious(0) probably_damaging(0.999) TCGA-HW-7486-01 18 706562 706562 T C ENOSF1 Missense_Mutation p.Y55C 0.18 deleterious(0) probably_damaging(1) TCGA-HW-7486-01 1 2161050 2161050 G A SKI Missense_Mutation p.R282Q 0.35 tolerated(0.06) probably_damaging(0.999) TCGA-HW-7486-01 1 57185712 57185712 A G C1orf168 Silent p.I716I 0.21 TCGA-HW-7486-01 2 127806087 127806087 G A BIN1 3'UTR 0.24 TCGA-HW-7486-01 2 179611497 179611497 T C TTN Intron 0.28 TCGA-HW-7486-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-7486-01 2 216983868 216983868 T C XRCC5 Silent p.C157C 0.09 TCGA-HW-7486-01 2 45236135 45236135 C T SIX2 Missense_Mutation p.A39T 0.12 tolerated(0.06) benign(0.031) TCGA-HW-7486-01 3 119720905 119720905 G A GSK3B Silent p.D90D 0.18 TCGA-HW-7486-01 3 122003579 122003579 G A CASR Silent p.Q936Q 0.17 TCGA-HW-7486-01 3 196386962 196386962 G A NRROS Missense_Mutation p.A150T 0.30 deleterious(0.03) probably_damaging(0.92) TCGA-HW-7486-01 4 38799739 38799739 C T TLR1 Silent p.A238A 0.08 TCGA-HW-7486-01 5 140869610 140869610 A G PCDHGC5 Missense_Mutation p.D268G 0.28 deleterious(0) probably_damaging(0.999) TCGA-HW-7486-01 6 135239871 135239871 C T ALDH8A1 Silent p.K382K 0.21 TCGA-HW-7486-01 6 56044619 56044619 G A COL21A1 Nonsense_Mutation p.R133* 0.23 TCGA-HW-7486-01 8 102381603 102381603 C G NACAP1 RNA 0.06 TCGA-HW-7487-01 10 1089327 1089327 A G IDI1 Missense_Mutation p.L107S 0.43 deleterious(0) probably_damaging(1) TCGA-HW-7487-01 12 109294236 109294236 C T DAO Silent p.A323A 0.17 TCGA-HW-7487-01 12 7076667 7076667 T C PHB2 Intron 0.15 TCGA-HW-7487-01 14 105420366 105420366 G A AHNAK2 Silent p.G474G 0.14 TCGA-HW-7487-01 14 20444378 20444378 C T OR4K15 Missense_Mutation p.S234F 0.30 deleterious(0.01) possibly_damaging(0.866) TCGA-HW-7487-01 14 21868155 21868155 C T CHD8 Missense_Mutation p.G1601E 0.28 tolerated(1) benign(0.005) TCGA-HW-7487-01 15 42164528 42164528 G A SPTBN5 Missense_Mutation p.R1713W 0.31 benign(0.004) TCGA-HW-7487-01 18 21330907 21330907 G A LAMA3 Missense_Mutation p.R237H 0.37 probably_damaging(1) TCGA-HW-7487-01 19 42791758 42791758 G A CIC Missense_Mutation p.R215Q 0.57 probably_damaging(0.999) TCGA-HW-7487-01 19 53857025 53857025 G A ZNF845 3'UTR 0.08 TCGA-HW-7487-01 19 56249567 56249567 C A NLRP9 Silent p.L58L 0.52 TCGA-HW-7487-01 19 757295 757295 G C MISP Missense_Mutation p.E117Q 0.36 deleterious(0.04) possibly_damaging(0.797) TCGA-HW-7487-01 1 51439758 51439758 A G CDKN2C Missense_Mutation p.H108R 0.47 deleterious(0) probably_damaging(0.978) TCGA-HW-7487-01 1 65268661 65268661 G A RAVER2 Missense_Mutation p.V370I 0.07 tolerated(0.47) benign(0.021) TCGA-HW-7487-01 1 78426058 78426059 - T FUBP1 Nonsense_Mutation p.Y489* 0.43 TCGA-HW-7487-01 21 43519136 43519136 C T UMODL1 Silent p.V344V 0.35 TCGA-HW-7487-01 2 179433152 179433152 C T TTN Missense_Mutation p.V25903I 0.16 TCGA-HW-7487-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-7487-01 2 241656686 241656686 C T KIF1A 3'UTR 0.12 TCGA-HW-7487-01 3 123419711 123419711 G A MYLK Silent p.D868D 0.31 TCGA-HW-7487-01 3 4725122 4725122 C T ITPR1 Missense_Mutation p.R1057C 0.31 deleterious(0) probably_damaging(0.997) TCGA-HW-7487-01 5 134785348 134785348 C T TIFAB Silent p.L94L 0.30 TCGA-HW-7487-01 5 135693009 135693009 G A TRPC7 Missense_Mutation p.R23C 0.40 deleterious(0) probably_damaging(0.973) TCGA-HW-7487-01 7 149486800 149486800 C T SSPO RNA 0.33 TCGA-HW-7489-01 10 114912156 114912156 T G TCF7L2 Missense_Mutation p.L409R 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-HW-7489-01 10 13231079 13231079 A G MCM10 Missense_Mutation p.I473V 0.14 tolerated(1) benign(0.001) TCGA-HW-7489-01 11 61630533 61630533 C G FADS2 Missense_Mutation p.N324K 0.05 tolerated(0.19) benign(0.009) TCGA-HW-7489-01 11 92600243 92600243 C T FAT3 Nonsense_Mutation p.Q3999* 0.55 TCGA-HW-7489-01 12 21392093 21392093 T C SLCO1B1 Silent p.S682S 0.19 TCGA-HW-7489-01 12 45797221 45797221 G T ANO6 Splice_Site p.X616_splice 0.08 TCGA-HW-7489-01 13 100215069 100215069 A G TM9SF2 3'UTR 0.24 TCGA-HW-7489-01 13 50586070 50586070 G A TRIM13 Splice_Site p.X2_splice 0.28 TCGA-HW-7489-01 15 73992059 73992059 G A CD276 Missense_Mutation p.G27R 0.11 deleterious(0.01) benign(0.01) TCGA-HW-7489-01 16 12798613 12798613 G A CPPED1 Missense_Mutation p.R195W 0.20 deleterious(0.03) possibly_damaging(0.67) TCGA-HW-7489-01 16 1552970 1552970 C A TELO2 Missense_Mutation p.N603K 0.04 deleterious(0) probably_damaging(0.99) TCGA-HW-7489-01 16 66950067 66950067 G A CDH16 Missense_Mutation p.P109S 0.18 tolerated(0.14) benign(0.424) TCGA-HW-7489-01 17 21147493 21147493 G A C17orf103 Missense_Mutation p.R50W 0.07 deleterious(0) benign(0.056) TCGA-HW-7489-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.57 deleterious(0) probably_damaging(0.998) TCGA-HW-7489-01 19 6709693 6709693 A G C3 Splice_Site p.X615_splice 0.12 TCGA-HW-7489-01 1 17017746 17017746 C T ESPNP RNA 0.18 TCGA-HW-7489-01 1 207890949 207890949 G T CR1L Nonsense_Mutation p.E519* 0.05 TCGA-HW-7489-01 1 248039796 248039796 C T TRIM58 3'UTR 0.22 TCGA-HW-7489-01 21 38098527 38098527 G A SIM2 Silent p.L217L 0.30 TCGA-HW-7489-01 22 45221460 45221460 G A ARHGAP8 Missense_Mutation p.V317I 0.09 deleterious(0.02) possibly_damaging(0.678) TCGA-HW-7489-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-7489-01 3 151164878 151164878 G T IGSF10 Missense_Mutation p.P964H 0.04 deleterious(0.02) possibly_damaging(0.844) TCGA-HW-7489-01 3 168834410 168834410 G A MECOM Missense_Mutation p.T294M 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-HW-7489-01 4 248382 248382 A C ZNF876P RNA 0.54 TCGA-HW-7489-01 4 2696820 2696820 C T FAM193A Silent p.C789C 0.10 TCGA-HW-7489-01 5 137708439 137708439 T A KDM3B Missense_Mutation p.L90H 0.37 deleterious(0) possibly_damaging(0.87) TCGA-HW-7489-01 5 176857877 176857877 C T GRK6 Silent p.G19G 0.26 TCGA-HW-7489-01 9 18776969 18776969 C T ADAMTSL1 Silent p.D914D 0.27 TCGA-HW-7489-01 X 12734264 12734264 C T FRMPD4 Silent p.G562G 0.10 TCGA-HW-7489-01 X 76938654 76938655 - T ATRX Frame_Shift_Ins p.D699Gfs*2 0.44 TCGA-HW-7490-01 10 72307126 72307126 C T PALD1 Missense_Mutation p.A729V 0.33 tolerated(0.13) benign(0.033) TCGA-HW-7490-01 11 102666337 102666337 C T MMP1 Silent p.E209E 0.28 TCGA-HW-7490-01 11 55136122 55136122 A T OR4A15 Missense_Mutation p.T255S 0.45 tolerated_low_confidence(0.26) benign(0.03) TCGA-HW-7490-01 11 55606760 55606760 A G OR5D16 Missense_Mutation p.H178R 0.09 deleterious(0) probably_damaging(1) TCGA-HW-7490-01 12 112193513 112193513 G A ACAD10 Silent p.P1032P 0.12 TCGA-HW-7490-01 12 11545801 11545801 C T PRB2 Missense_Mutation p.R404H 0.17 deleterious_low_confidence(0) unknown(0) TCGA-HW-7490-01 12 13716801 13716801 C T GRIN2B Missense_Mutation p.R1124K 0.42 tolerated(1) benign(0.011) TCGA-HW-7490-01 12 49441848 49441849 AT - KMT2D Frame_Shift_Del p.M1379Vfs*52 0.08 TCGA-HW-7490-01 12 52777394 52777394 G A KRT84 Silent p.V245V 0.50 TCGA-HW-7490-01 13 32852686 32852686 G C FRY Splice_Site p.X2823_splice 0.14 TCGA-HW-7490-01 15 55497820 55497820 C T RAB27A Missense_Mutation p.R184Q 0.44 deleterious(0.04) benign(0.402) TCGA-HW-7490-01 15 83718894 83718895 AA - BTBD1 Frame_Shift_Del p.C199Sfs*19 0.15 TCGA-HW-7490-01 16 23203841 23203841 G T SCNN1G Missense_Mutation p.D263Y 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-HW-7490-01 16 84163854 84163854 G A HSDL1 Missense_Mutation p.P135S 0.10 tolerated(0.22) benign(0.007) TCGA-HW-7490-01 16 88876924 88876924 G A APRT Silent p.A76A 0.12 TCGA-HW-7490-01 17 27430667 27430667 G C MYO18A Missense_Mutation p.L1153V 0.06 deleterious(0) possibly_damaging(0.868) TCGA-HW-7490-01 17 51900882 51900882 G A KIF2B Missense_Mutation p.R163H 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-HW-7490-01 17 61988492 61988492 C T CSHL1 Intron 0.11 TCGA-HW-7490-01 17 7139547 7139547 T C PHF23 Silent p.P233P 0.34 TCGA-HW-7490-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.91 tolerated(0.13) possibly_damaging(0.631) TCGA-HW-7490-01 19 15471767 15471769 GAA - AKAP8 In_Frame_Del p.F473del 0.38 TCGA-HW-7490-01 19 42128032 42128032 C A CEACAM4 Missense_Mutation p.R178S 0.20 deleterious(0.01) benign(0.04) TCGA-HW-7490-01 19 51363196 51363196 C A KLK3 Intron 0.29 TCGA-HW-7490-01 19 54973460 54973461 TG - LENG9 Frame_Shift_Del p.Q439Vfs*58 0.39 TCGA-HW-7490-01 1 17961457 17961457 G C ARHGEF10L Missense_Mutation p.V625L 0.06 tolerated(0.55) benign(0.001) TCGA-HW-7490-01 1 197070598 197070599 TC - ASPM Frame_Shift_Del p.K2595Sfs*6 0.27 TCGA-HW-7490-01 1 215914869 215914869 T C USH2A Silent p.G3853G 0.11 TCGA-HW-7490-01 1 248308952 248308952 A G OR2M5 Missense_Mutation p.Y168C 0.04 deleterious(0.04) benign(0.247) TCGA-HW-7490-01 1 248487368 248487368 T C OR2M7 Missense_Mutation p.Y168C 0.38 deleterious(0.02) benign(0.211) TCGA-HW-7490-01 1 27057848 27057848 C - ARID1A Frame_Shift_Del p.Q520Sfs*99 0.09 TCGA-HW-7490-01 1 861308 861308 G C AL645608.1 Missense_Mutation p.L98V 0.17 deleterious_low_confidence(0) possibly_damaging(0.578) TCGA-HW-7490-01 20 34761743 34761745 AGG - EPB41L1 In_Frame_Del p.E17del 0.20 TCGA-HW-7490-01 2 133175296 133175296 C T GPR39 Silent p.A227A 0.38 TCGA-HW-7490-01 2 162087893 162087893 C T TANK Missense_Mutation p.P311L 0.08 tolerated(0.11) benign(0.03) TCGA-HW-7490-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-7490-01 2 85617291 85617291 C T ELMOD3 Silent p.P282P 0.35 TCGA-HW-7490-01 3 10885932 10885932 G C SLC6A11 Missense_Mutation p.E219D 0.06 tolerated(0.73) benign(0.332) TCGA-HW-7490-01 3 134078153 134078155 TGT - AMOTL2 In_Frame_Del p.T692del 0.23 TCGA-HW-7490-01 4 109805344 109805344 G A COL25A1 Missense_Mutation p.P337L 0.33 deleterious(0.02) probably_damaging(1) TCGA-HW-7490-01 4 20598163 20598163 C T SLIT2 Missense_Mutation p.P1149L 0.05 deleterious(0) benign(0.16) TCGA-HW-7490-01 4 6612960 6612960 C T MAN2B2 Silent p.L840L 0.43 TCGA-HW-7490-01 5 150425452 150425454 CTT - TNIP1 In_Frame_Del p.K302del 0.14 TCGA-HW-7490-01 6 28540794 28540794 A G SCAND3 Missense_Mutation p.C958R 0.17 tolerated_low_confidence(0.28) probably_damaging(0.996) TCGA-HW-7490-01 6 47976601 47976601 A T PTCHD4 Missense_Mutation p.F226I 0.33 tolerated(0.16) probably_damaging(0.985) TCGA-HW-7490-01 6 84896100 84896105 TTTTCC ATTTTTA KIAA1009 Frame_Shift_Ins p.R449Ifs*7 0.29 TCGA-HW-7490-01 7 90613505 90613505 T A CDK14 Silent p.A312A 0.27 TCGA-HW-7490-01 7 99312223 99312224 TT - CYP3A7 Frame_Shift_Del p.K251Ifs*26 0.18 TCGA-HW-7490-01 8 26237249 26237249 G A BNIP3L 5'Flank 0.12 TCGA-HW-7490-01 8 71646066 71646066 T C XKR9 Missense_Mutation p.W177R 0.09 deleterious(0.03) probably_damaging(0.93) TCGA-HW-7490-01 8 87498754 87498755 TT - RMDN1 Frame_Shift_Del p.R152Sfs*6 0.11 TCGA-HW-7490-01 8 93026829 93026829 C T RUNX1T1 Missense_Mutation p.R160H 0.12 tolerated(0.09) benign(0.084) TCGA-HW-7490-01 8 95182644 95182644 G A CDH17 Silent p.V349V 0.40 TCGA-HW-7490-01 9 134136482 134136482 C T FAM78A Silent p.L193L 0.39 TCGA-HW-7490-01 9 6013101 6013102 AG - RANBP6 Frame_Shift_Del p.L836Afs*3 0.15 TCGA-HW-7490-01 9 6497275 6497278 CAGT - UHRF2 Frame_Shift_Del p.V562Efs*2 0.26 TCGA-HW-7490-01 X 119573053 119573053 C T LAMP2 Intron 0.08 TCGA-HW-7490-01 X 131214037 131214037 T C FRMD7 Silent p.K349K 0.73 TCGA-HW-7490-01 X 41088882 41088884 AAG - USP9X In_Frame_Del p.R2429del 0.36 TCGA-HW-7490-01 X 76918976 76918977 TA - ATRX Frame_Shift_Del p.H1338Qfs*11 0.50 TCGA-HW-7490-01 Y 22930744 22930744 C A RPS4Y2 Missense_Mutation p.H138Q 0.45 deleterious(0.04) benign(0.056) TCGA-HW-7491-01 10 81272935 81272935 A G EIF5AL1 3'UTR 0.47 TCGA-HW-7491-01 11 57799000 57799000 G A OR6Q1 Silent p.S192S 0.52 TCGA-HW-7491-01 11 85395939 85395939 C T CCDC89 3'UTR 0.62 TCGA-HW-7491-01 12 108685742 108685742 C T CMKLR1 Missense_Mutation p.R333H 0.35 tolerated(0.08) probably_damaging(0.943) TCGA-HW-7491-01 13 86370348 86370348 T C SLITRK6 Missense_Mutation p.N99S 0.78 tolerated(1) benign(0.014) TCGA-HW-7491-01 14 51448645 51448645 G C TRIM9 Missense_Mutation p.P594A 0.44 deleterious(0.04) probably_damaging(0.992) TCGA-HW-7491-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.53 deleterious_low_confidence(0) probably_damaging(1) TCGA-HW-7491-01 16 4383346 4383346 A G GLIS2 Splice_Site p.X58_splice 0.06 TCGA-HW-7491-01 16 67986327 67986340 GTCTGAAACAAGAA - SLC12A4 Splice_Site p.X228_splice 0.21 TCGA-HW-7491-01 17 7132713 7132713 T C DVL2 Silent p.T267T 0.41 TCGA-HW-7491-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.78 probably_damaging(1) TCGA-HW-7491-01 19 5867346 5867347 - GG FUT5 Frame_Shift_Ins p.S131Pfs*118 0.27 TCGA-HW-7491-01 1 151237660 151237660 C T PSMD4 Missense_Mutation p.R130C 0.17 deleterious(0.02) benign(0.112) TCGA-HW-7491-01 20 3090995 3090995 G A UBOX5 Intron 0.35 TCGA-HW-7491-01 22 16256627 16256627 C T POTEH 3'UTR 0.09 TCGA-HW-7491-01 2 178386040 178386040 T G AGPS Missense_Mutation p.F581V 0.33 deleterious(0) possibly_damaging(0.904) TCGA-HW-7491-01 2 47220609 47220609 G A TTC7A Missense_Mutation p.R262K 0.47 tolerated(0.75) benign(0.001) TCGA-HW-7491-01 3 178916938 178916940 GAA - PIK3CA In_Frame_Del p.E110del 0.47 TCGA-HW-7491-01 3 38739794 38739794 G A SCN10A Silent p.D1639D 0.51 TCGA-HW-7491-01 6 54191662 54191662 G A TINAG Missense_Mutation p.R191H 0.34 deleterious(0.03) benign(0.062) TCGA-HW-7491-01 7 107748127 107748127 G T LAMB4 Missense_Mutation p.D180E 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-HW-7491-01 7 140058508 140058508 G A SLC37A3 Silent p.N151N 0.39 TCGA-HW-7491-01 7 81331802 81331802 G A HGF 3'UTR 0.43 TCGA-HW-7491-01 7 82784608 82784608 G T PCLO Missense_Mutation p.P450Q 0.42 possibly_damaging(0.904) TCGA-HW-7491-01 9 79936584 79936584 G A VPS13A Missense_Mutation p.D1918N 0.40 deleterious(0) probably_damaging(0.945) TCGA-HW-7495-01 10 103912058 103912058 C G NOLC1 5'UTR 0.33 TCGA-HW-7495-01 11 129817095 129817095 C T PRDM10 Silent p.T155T 0.28 TCGA-HW-7495-01 14 63269245 63269245 G A KCNH5 Missense_Mutation p.R542W 0.09 deleterious(0) possibly_damaging(0.84) TCGA-HW-7495-01 17 29112983 29112983 T C CRLF3 Silent p.G342G 0.10 TCGA-HW-7495-01 19 42798374 42798374 A - CIC Frame_Shift_Del p.R1416Dfs*38 0.12 TCGA-HW-7495-01 19 49459501 49459501 C T BAX Nonsense_Mutation p.R94* 0.11 TCGA-HW-7495-01 19 56090218 56090218 G A ZNF579 Missense_Mutation p.P263L 0.62 deleterious(0.02) probably_damaging(0.981) TCGA-HW-7495-01 1 109805553 109805553 A G CELSR2 Missense_Mutation p.D1557G 0.11 deleterious(0) possibly_damaging(0.752) TCGA-HW-7495-01 1 12921405 12921405 G A PRAMEF2 Missense_Mutation p.R399H 0.06 tolerated(0.31) benign(0.001) TCGA-HW-7495-01 1 40723806 40723806 G A ZMPSTE24 5'UTR 0.52 TCGA-HW-7495-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-7495-01 2 74074536 74074536 C T STAMBP Missense_Mutation p.A133V 0.05 tolerated(0.16) benign(0.156) TCGA-HW-7495-01 2 80808942 80808942 C T CTNNA2 Missense_Mutation p.R669W 0.39 deleterious(0) probably_damaging(0.986) TCGA-HW-7495-01 3 112998818 112998818 C T BOC Missense_Mutation p.A723V 0.07 deleterious(0) probably_damaging(0.979) TCGA-HW-7495-01 3 93714764 93714764 G A ARL13B Missense_Mutation p.A36T 0.35 tolerated(0.28) possibly_damaging(0.466) TCGA-HW-7495-01 5 14406753 14406753 C T TRIO Missense_Mutation p.T1644M 0.31 possibly_damaging(0.902) TCGA-HW-7495-01 6 7240706 7240706 T A RREB1 Missense_Mutation p.F1282I 0.26 deleterious(0.01) benign(0.136) TCGA-HW-7495-01 7 122130306 122130306 C A CADPS2 Missense_Mutation p.A561S 0.09 deleterious(0.01) benign(0.284) TCGA-HW-7495-01 7 21639635 21639635 G A DNAH11 Silent p.G966G 0.08 TCGA-HW-7495-01 9 289509 289509 G A DOCK8 Splice_Site p.X111_splice 0.11 TCGA-HW-7495-01 X 117527112 117527112 G A WDR44 Missense_Mutation p.R235H 0.33 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-HW-7495-01 X 130412511 130412511 G A IGSF1 Silent p.T660T 0.04 TCGA-HW-7495-01 X 19764444 19764444 T A SH3KBP1 Missense_Mutation p.N93I 0.43 tolerated(0.19) benign(0.009) TCGA-HW-8319-01 10 28345529 28345529 T C MPP7 Silent p.L477L 0.51 TCGA-HW-8319-01 11 1221940 1221940 G A MUC5AC RNA 0.67 TCGA-HW-8319-01 11 18159642 18159642 C T MRGPRX3 Missense_Mutation p.T298M 0.71 deleterious(0.02) benign(0.1) TCGA-HW-8319-01 11 4608789 4608789 C G OR52I2 Missense_Mutation p.I249M 0.59 tolerated(0.24) benign(0.436) TCGA-HW-8319-01 11 5021019 5021019 T C OR51L1 Silent p.H269H 0.13 TCGA-HW-8319-01 11 56510829 56510829 G A OR9G4 Silent p.T153T 0.07 TCGA-HW-8319-01 14 64936370 64936374 AATAA - AKAP5 Frame_Shift_Del p.I422Qfs*18 0.29 TCGA-HW-8319-01 14 74347933 74347933 A G PTGR2 Missense_Mutation p.K293E 0.45 tolerated(0.93) benign(0.001) TCGA-HW-8319-01 15 74467824 74467824 G A ISLR Missense_Mutation p.A209T 0.22 tolerated(0.43) benign(0.005) TCGA-HW-8319-01 16 1706072 1706072 C T CRAMP1L Silent p.D438D 0.36 TCGA-HW-8319-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.39 deleterious(0) probably_damaging(1) TCGA-HW-8319-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.53 TCGA-HW-8319-01 18 11897077 11897077 G C MPPE1 Missense_Mutation p.Q63E 0.29 tolerated(0.93) benign(0.004) TCGA-HW-8319-01 19 47570840 47570840 G A ZC3H4 Silent p.A895A 0.39 TCGA-HW-8319-01 19 55112430 55112430 A T LILRA1 3'UTR 0.29 TCGA-HW-8319-01 1 158325319 158325319 G A CD1E Silent p.A195A 0.09 TCGA-HW-8319-01 1 167385133 167385133 A C POU2F1 3'UTR 0.75 TCGA-HW-8319-01 1 248570030 248570030 C T OR2T1 Silent p.Y245Y 0.41 TCGA-HW-8319-01 1 41978828 41978828 C T HIVEP3 Missense_Mutation p.G2022S 0.43 benign(0.012) TCGA-HW-8319-01 20 33581234 33581234 G A MYH7B Missense_Mutation p.R844H 0.41 benign(0.006) TCGA-HW-8319-01 22 19026633 19026633 G A DGCR2 Silent p.D466D 0.28 TCGA-HW-8319-01 22 39715113 39715113 T C RPL3 Intron 0.09 TCGA-HW-8319-01 2 166211024 166211024 G C SCN2A Missense_Mutation p.S1081T 0.36 tolerated(0.13) probably_damaging(0.997) TCGA-HW-8319-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-8319-01 2 21226157 21226157 C T APOB Missense_Mutation p.R4046Q 0.34 benign(0) TCGA-HW-8319-01 3 108195254 108195254 G A MYH15 Missense_Mutation p.T428I 0.52 deleterious(0.02) possibly_damaging(0.651) TCGA-HW-8319-01 3 15719776 15719776 C T ANKRD28 Missense_Mutation p.D853N 0.52 tolerated(0.08) probably_damaging(0.983) TCGA-HW-8319-01 3 18435971 18435971 C A SATB1 Missense_Mutation p.A397S 0.33 deleterious(0) possibly_damaging(0.676) TCGA-HW-8319-01 3 27439832 27439832 G C SLC4A7 Missense_Mutation p.L805V 0.51 tolerated(0.15) benign(0.202) TCGA-HW-8319-01 5 45262407 45262407 C T HCN1 Silent p.P763P 0.48 TCGA-HW-8319-01 5 96215430 96215430 C T ERAP2 Missense_Mutation p.P14L 0.07 tolerated_low_confidence(0.42) benign(0) TCGA-HW-8319-01 7 73511062 73511062 C G LIMK1 Missense_Mutation p.S88C 0.32 deleterious(0.01) possibly_damaging(0.705) TCGA-HW-8319-01 8 86021973 86021973 T G LRRCC1 Missense_Mutation p.L83R 0.45 deleterious(0) probably_damaging(0.999) TCGA-HW-8319-01 9 104170609 104170609 C T ZNF189 Missense_Mutation p.R187C 0.25 tolerated(0.07) possibly_damaging(0.769) TCGA-HW-8319-01 9 138713009 138713009 G A CAMSAP1 Silent p.F1166F 0.49 TCGA-HW-8319-01 9 85607825 85607825 G C RASEF Missense_Mutation p.A679G 0.31 deleterious(0) possibly_damaging(0.834) TCGA-HW-8319-01 X 114882253 114882253 T G PLS3 Missense_Mutation p.I559S 0.38 deleterious(0) probably_damaging(0.977) TCGA-HW-8319-01 X 152612569 152612569 G A ZNF275 Silent p.A142A 0.47 TCGA-HW-8319-01 X 75396760 75396760 C G PBDC1 Missense_Mutation p.D114E 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-HW-8319-01 X 76940431 76940431 C T ATRX Missense_Mutation p.R221K 0.36 probably_damaging(0.98) TCGA-HW-8320-01 10 102739072 102739072 T C MRPL43 3'Flank 0.47 TCGA-HW-8320-01 10 43088769 43088769 A G ZNF33B Silent p.H543H 0.18 TCGA-HW-8320-01 10 79793660 79793660 A C RPS24 Translation_Start_Site p.M1? 0.07 deleterious_low_confidence(0.02) benign(0.443) TCGA-HW-8320-01 11 47202192 47202192 C T PACSIN3 Silent p.A87A 0.08 TCGA-HW-8320-01 11 62749448 62749448 G A SLC22A6 Silent p.C221C 0.10 TCGA-HW-8320-01 11 64855533 64855533 G A ZFPL1 Missense_Mutation p.D294N 0.11 deleterious(0) probably_damaging(1) TCGA-HW-8320-01 12 113376296 113376296 G A OAS3 5'UTR 0.13 TCGA-HW-8320-01 12 132625414 132625414 C T DDX51 Missense_Mutation p.G468R 0.06 tolerated(0.37) benign(0.004) TCGA-HW-8320-01 14 92625466 92625466 A G CPSF2 Missense_Mutation p.K654R 0.04 tolerated(0.66) benign(0.002) TCGA-HW-8320-01 17 19316087 19316087 T A RNF112 Silent p.P124P 0.09 TCGA-HW-8320-01 17 3664729 3664729 C T ITGAE Missense_Mutation p.R134H 0.07 tolerated(0.24) benign(0.004) TCGA-HW-8320-01 17 40956252 40956252 A T CNTD1 Silent p.V85V 0.45 TCGA-HW-8320-01 17 40956254 40956254 A T CNTD1 Missense_Mutation p.K86I 0.43 deleterious(0) benign(0.235) TCGA-HW-8320-01 17 7577576 7577582 GTTGTAG - TP53 Frame_Shift_Del p.Y234Tfs*11 0.87 TCGA-HW-8320-01 17 78169012 78169012 G A CARD14 Missense_Mutation p.S460N 0.19 tolerated(0.27) benign(0.008) TCGA-HW-8320-01 17 79653396 79653396 C T HGS Silent p.H59H 0.06 TCGA-HW-8320-01 19 39664275 39664275 G C PAK4 Missense_Mutation p.Q241H 0.09 tolerated(0.11) benign(0.099) TCGA-HW-8320-01 1 186056428 186056428 C T HMCN1 Silent p.G3042G 0.49 TCGA-HW-8320-01 1 216062131 216062131 G A USH2A Silent p.L2620L 0.30 TCGA-HW-8320-01 1 86957002 86957002 C T CLCA1 Missense_Mutation p.A471V 0.12 deleterious(0.02) possibly_damaging(0.874) TCGA-HW-8320-01 1 9085133 9085133 G A SLC2A7 Missense_Mutation p.R18W 0.11 deleterious(0.01) benign(0.05) TCGA-HW-8320-01 20 36431347 36431347 C A CTNNBL1 Nonsense_Mutation p.C370* 0.06 TCGA-HW-8320-01 2 1079270 1079270 C G SNTG2 Missense_Mutation p.L47V 0.04 deleterious(0) probably_damaging(0.997) TCGA-HW-8320-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-8320-01 2 233274354 233274354 G A ALPPL2 Silent p.A457A 0.45 TCGA-HW-8320-01 2 32819095 32819095 C T BIRC6 Missense_Mutation p.A4490V 0.08 benign(0.036) TCGA-HW-8320-01 3 184714255 184714255 C T VPS8 Missense_Mutation p.R1268C 0.15 deleterious(0.01) possibly_damaging(0.453) TCGA-HW-8320-01 3 48699299 48699299 C T CELSR3 Missense_Mutation p.A257T 0.09 tolerated_low_confidence(0.38) benign(0) TCGA-HW-8320-01 4 111397908 111397908 A G ENPEP Missense_Mutation p.D113G 0.12 tolerated(0.22) possibly_damaging(0.768) TCGA-HW-8320-01 4 140187905 140187905 C T MGARP Missense_Mutation p.D191N 0.19 tolerated(0.58) benign(0.007) TCGA-HW-8320-01 4 156135956 156135956 C T NPY2R Missense_Mutation p.L289F 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-HW-8320-01 4 26640408 26640408 C T TBC1D19 Nonsense_Mutation p.Q129* 0.41 TCGA-HW-8320-01 5 182353 182353 C T PLEKHG4B Missense_Mutation p.P1244L 0.15 tolerated(0.92) benign(0) TCGA-HW-8320-01 8 108306212 108306212 A G ANGPT1 Silent p.R330R 0.18 TCGA-HW-8320-01 8 144940776 144940776 C T EPPK1 Missense_Mutation p.V2216I 0.17 benign(0.003) TCGA-HW-8320-01 8 24193003 24193003 C T ADAM28 Silent p.C472C 0.20 TCGA-HW-8320-01 8 77616608 77616608 C - ZFHX4 Frame_Shift_Del p.Y95* 0.28 TCGA-HW-8320-01 9 112898643 112898643 C T PALM2-AKAP2 Silent p.H273H 0.46 TCGA-HW-8320-01 9 35811425 35811425 G A SPAG8 Silent p.D206D 0.19 TCGA-HW-8320-01 X 117695460 117695460 G A DOCK11 Missense_Mutation p.A225T 0.35 tolerated(0.35) benign(0.426) TCGA-HW-8321-01 10 26285470 26285470 G A MYO3A Missense_Mutation p.G119S 0.12 deleterious(0) probably_damaging(0.967) TCGA-HW-8321-01 11 67222946 67222946 C T CABP4 Missense_Mutation p.R18C 0.58 tolerated_low_confidence(0.05) benign(0.004) TCGA-HW-8321-01 12 50044648 50044648 T A FMNL3 Missense_Mutation p.D604V 0.19 deleterious(0.03) probably_damaging(0.982) TCGA-HW-8321-01 12 53517583 53517583 T A SOAT2 Missense_Mutation p.F482I 0.29 deleterious(0.03) possibly_damaging(0.811) TCGA-HW-8321-01 12 73012760 73012760 G A TRHDE Missense_Mutation p.R759Q 0.26 tolerated(0.12) benign(0.097) TCGA-HW-8321-01 12 7867804 7867804 G A DPPA3 Silent p.T36T 0.35 TCGA-HW-8321-01 13 27680004 27680004 C T USP12 Silent p.A69A 0.21 TCGA-HW-8321-01 14 73945237 73945237 C T HEATR4 3'UTR 0.05 TCGA-HW-8321-01 14 74062179 74062179 G A ACOT4 Missense_Mutation p.E363K 0.04 deleterious(0) probably_damaging(0.964) TCGA-HW-8321-01 15 71535120 71535120 C T THSD4 Silent p.S199S 0.09 TCGA-HW-8321-01 17 1639495 1639495 G A WDR81 Missense_Mutation p.D1830N 0.05 deleterious(0) probably_damaging(0.996) TCGA-HW-8321-01 17 42828250 42828250 C G DBF4B Missense_Mutation p.P493A 0.32 deleterious_low_confidence(0.01) benign(0.109) TCGA-HW-8321-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.72 deleterious(0) probably_damaging(1) TCGA-HW-8321-01 17 9631874 9631874 A T USP43 Missense_Mutation p.D980V 0.27 deleterious(0) benign(0.303) TCGA-HW-8321-01 1 197111767 197111768 - T ASPM Frame_Shift_Ins p.E539Rfs*16 0.12 TCGA-HW-8321-01 1 57422478 57422478 G C C8B Missense_Mutation p.Q119E 0.04 tolerated(0.44) benign(0.036) TCGA-HW-8321-01 1 62737421 62737421 T C KANK4 Intron 0.62 TCGA-HW-8321-01 20 45131229 45131229 G A ZNF334 Missense_Mutation p.S250F 0.34 deleterious(0) probably_damaging(0.921) TCGA-HW-8321-01 20 62196772 62196772 C T HELZ2 Missense_Mutation p.V1135M 0.14 deleterious(0.04) benign(0.013) TCGA-HW-8321-01 2 102835531 102835531 A G IL1RL2 Silent p.R281R 0.31 TCGA-HW-8321-01 2 107446647 107446647 C T ST6GAL2 Missense_Mutation p.R398H 0.08 probably_damaging(1) TCGA-HW-8321-01 2 185801555 185801555 C G ZNF804A Missense_Mutation p.P478A 0.12 tolerated(0.56) benign(0.011) TCGA-HW-8321-01 2 208632020 208632020 G T FZD5 Missense_Mutation p.L482I 0.16 tolerated(0.42) benign(0.098) TCGA-HW-8321-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-8321-01 2 25457209 25457209 C T DNMT3A Nonsense_Mutation p.W893* 0.30 TCGA-HW-8321-01 2 61310289 61310289 G C KIAA1841 Missense_Mutation p.V244L 0.26 tolerated(0.17) probably_damaging(0.997) TCGA-HW-8321-01 3 119204196 119204196 G A POGLUT1 Nonsense_Mutation p.W200* 0.21 TCGA-HW-8321-01 3 12779642 12779642 T G TMEM40 Silent p.P139P 0.28 TCGA-HW-8321-01 3 137982663 137982663 G C ARMC8 Missense_Mutation p.R392T 0.04 deleterious(0.02) possibly_damaging(0.574) TCGA-HW-8321-01 3 143708739 143708739 C A C3orf58 3'UTR 0.18 TCGA-HW-8321-01 3 183898930 183898930 G C AP2M1 Missense_Mutation p.G208A 0.14 deleterious(0) probably_damaging(1) TCGA-HW-8321-01 3 32483476 32483476 G A CMTM7 Missense_Mutation p.V102M 0.08 tolerated(0.12) benign(0.027) TCGA-HW-8321-01 3 49569023 49569023 A G DAG1 Missense_Mutation p.D360G 0.16 tolerated(1) benign(0) TCGA-HW-8321-01 3 49836253 49836253 G A CDHR4 Intron 0.26 TCGA-HW-8321-01 5 176517585 176517585 G T FGFR4 Missense_Mutation p.A96S 0.19 tolerated(1) benign(0.011) TCGA-HW-8321-01 6 30134981 30134981 T C TRIM15 Missense_Mutation p.L137P 0.18 deleterious(0) benign(0.146) TCGA-HW-8321-01 6 32018082 32018082 G A TNXB 5'Flank 0.37 TCGA-HW-8321-01 6 97246405 97246405 C T GPR63 Silent p.K401K 0.35 TCGA-HW-8321-01 7 144015450 144015450 C A OR2A1 Missense_Mutation p.P78H 0.15 deleterious(0) probably_damaging(0.999) TCGA-HW-8321-01 7 73471779 73471779 G A ELN Intron 0.33 TCGA-HW-8321-01 7 88964578 88964578 A C ZNF804B Missense_Mutation p.N761T 0.35 tolerated(0.4) benign(0.003) TCGA-HW-8321-01 7 97941545 97941545 C T BAIAP2L1 Missense_Mutation p.R224Q 0.08 tolerated(0.6) possibly_damaging(0.509) TCGA-HW-8321-01 9 84534446 84534446 A G SPATA31D5P RNA 0.30 TCGA-HW-8321-01 X 40534573 40534573 C T MED14 Missense_Mutation p.R974Q 0.08 deleterious(0.04) benign(0.004) TCGA-HW-8321-01 X 63412957 63412957 A G AMER1 Silent p.P70P 0.15 TCGA-HW-8322-01 12 112110475 112110475 T C BRAP Missense_Mutation p.K246R 0.36 tolerated(0.06) probably_damaging(0.984) TCGA-HW-8322-01 14 105209429 105209429 G A ADSSL1 Missense_Mutation p.R368H 0.39 tolerated(0.33) possibly_damaging(0.831) TCGA-HW-8322-01 14 24642224 24642224 A G REC8 Missense_Mutation p.Y81C 0.41 deleterious(0) probably_damaging(0.998) TCGA-HW-8322-01 16 7629894 7629894 G T RBFOX1 Missense_Mutation p.R149L 0.32 deleterious(0) probably_damaging(0.977) TCGA-HW-8322-01 17 10536939 10536939 G C MYH3 Missense_Mutation p.A1539G 0.05 tolerated(0.11) benign(0) TCGA-HW-8322-01 17 2371168 2371168 C T METTL16 Missense_Mutation p.V158M 0.14 deleterious(0.02) possibly_damaging(0.876) TCGA-HW-8322-01 17 36936783 36936784 GT A PIP4K2B Frame_Shift_Del p.Y143Lfs*22 0.08 TCGA-HW-8322-01 19 11143994 11143994 G A SMARCA4 Missense_Mutation p.R1192H 0.32 probably_damaging(1) TCGA-HW-8322-01 19 14591417 14591417 G A GIPC1 Silent p.Y154Y 0.47 TCGA-HW-8322-01 19 43358239 43358239 G A PSG10P RNA 0.04 TCGA-HW-8322-01 19 54611508 54611508 G A TFPT Missense_Mutation p.A156V 0.53 deleterious(0.02) benign(0.031) TCGA-HW-8322-01 1 1267913 1267913 C - TAS1R3 Frame_Shift_Del p.Q336Sfs*3 0.30 TCGA-HW-8322-01 1 196250118 196250118 T C KCNT2 Missense_Mutation p.M928V 0.36 tolerated(0.17) benign(0.001) TCGA-HW-8322-01 1 206243208 206243208 G A C1orf186 Silent p.S18S 0.40 TCGA-HW-8322-01 1 222805521 222805521 C T MIA3 Missense_Mutation p.H1062Y 0.13 tolerated(0.12) benign(0.177) TCGA-HW-8322-01 1 32084763 32084763 A G HCRTR1 5'UTR 0.12 TCGA-HW-8322-01 1 44423086 44423086 C A IPO13 Missense_Mutation p.L469I 0.04 tolerated(0.23) benign(0.017) TCGA-HW-8322-01 21 33371363 33371363 A C HUNK Missense_Mutation p.M671L 0.04 deleterious_low_confidence(0.02) benign(0.209) TCGA-HW-8322-01 22 23523557 23523557 C T BCR Missense_Mutation p.A137V 0.07 tolerated_low_confidence(0.4) benign(0.021) TCGA-HW-8322-01 22 36661324 36661324 A G APOL1 Missense_Mutation p.K164E 0.40 tolerated(0.13) benign(0.122) TCGA-HW-8322-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-8322-01 3 78685111 78685111 C T ROBO1 Missense_Mutation p.R1062H 0.45 tolerated(0.25) possibly_damaging(0.84) TCGA-HW-8322-01 3 97487028 97487028 A G ARL6 Missense_Mutation p.D26G 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-HW-8322-01 5 113698887 113698887 C T KCNN2 Missense_Mutation p.L139F 0.25 deleterious(0.02) probably_damaging(0.966) TCGA-HW-8322-01 5 68689027 68689027 T C RAD17 Missense_Mutation p.L423S 0.37 deleterious(0) probably_damaging(0.972) TCGA-HW-8322-01 6 110301179 110301179 C T GPR6 Silent p.F288F 0.05 TCGA-HW-8322-01 6 123957943 123957943 C G TRDN 5'Flank 0.10 TCGA-HW-8322-01 7 100779018 100779018 G A SERPINE1 Silent p.A341A 0.24 TCGA-HW-8322-01 7 45144244 45144244 G A TBRG4 Missense_Mutation p.A267V 0.05 tolerated(0.47) benign(0.02) TCGA-HW-8322-01 9 139395301 139395301 T G NOTCH1 Splice_Site p.X1880_splice 0.09 TCGA-HW-8322-01 9 139399848 139399848 G - NOTCH1 Frame_Shift_Del p.F1500Lfs*80 0.45 TCGA-HW-A5KJ-01 10 76784946 76784949 ACAA - KAT6B Frame_Shift_Del p.T1203Rfs*21 0.34 TCGA-HW-A5KJ-01 10 98797514 98797514 G A SLIT1 Silent p.D769D 0.43 TCGA-HW-A5KJ-01 11 60268575 60268575 A G MS4A12 Missense_Mutation p.I112V 0.05 tolerated(0.2) benign(0.009) TCGA-HW-A5KJ-01 11 64111866 64111866 A C CCDC88B Missense_Mutation p.Q618P 0.32 tolerated_low_confidence(0.14) benign(0.191) TCGA-HW-A5KJ-01 11 82444076 82444078 GAA - FAM181B In_Frame_Del p.F232del 0.47 TCGA-HW-A5KJ-01 11 82643883 82643883 A T C11orf82 Silent p.G501G 0.42 TCGA-HW-A5KJ-01 12 100478361 100478361 T C UHRF1BP1L Missense_Mutation p.H394R 0.33 tolerated(0.35) benign(0.066) TCGA-HW-A5KJ-01 12 10205309 10205321 CCTCTCTTCAGTG - CLEC9A Frame_Shift_Del p.T8Rfs*25 0.26 TCGA-HW-A5KJ-01 12 105464505 105464507 CTT - ALDH1L2 In_Frame_Del p.E90del 0.23 TCGA-HW-A5KJ-01 12 44180218 44180218 A C IRAK4 Missense_Mutation p.E402A 0.06 tolerated(0.09) possibly_damaging(0.867) TCGA-HW-A5KJ-01 12 86199470 86199470 C T RASSF9 Silent p.E106E 0.09 TCGA-HW-A5KJ-01 14 36295747 36295749 AAG - BRMS1L In_Frame_Del p.K10del 0.53 TCGA-HW-A5KJ-01 15 40751367 40751367 G A BAHD1 Missense_Mutation p.R235H 0.41 tolerated(0.08) benign(0.001) TCGA-HW-A5KJ-01 15 75932533 75932533 G A IMP3 5'UTR 0.42 TCGA-HW-A5KJ-01 16 87938397 87938397 C T CA5A Missense_Mutation p.A152T 0.29 deleterious(0) probably_damaging(0.989) TCGA-HW-A5KJ-01 17 25932772 25932772 C T KSR1 Missense_Mutation p.R528W 0.42 deleterious(0) probably_damaging(1) TCGA-HW-A5KJ-01 17 34893506 34893508 AGG - PIGW In_Frame_Del p.R188del 0.32 TCGA-HW-A5KJ-01 19 17752258 17752258 C A UNC13A Missense_Mutation p.E860D 0.37 deleterious(0.03) possibly_damaging(0.817) TCGA-HW-A5KJ-01 19 52519785 52519785 G A ZNF614 Missense_Mutation p.R356C 0.14 tolerated(0.1) possibly_damaging(0.791) TCGA-HW-A5KJ-01 1 151265460 151265461 TT - PI4KB Frame_Shift_Del p.K785Rfs*9 0.38 TCGA-HW-A5KJ-01 1 152281299 152281299 G A FLG Silent p.G2021G 0.02 TCGA-HW-A5KJ-01 1 17083779 17083779 G A MST1L RNA 0.11 TCGA-HW-A5KJ-01 1 247978839 247978840 AT - OR14A16 Frame_Shift_Del p.S65Ffs*54 0.28 TCGA-HW-A5KJ-01 1 43912030 43912033 CAAA - SZT2 Frame_Shift_Del p.K2949Sfs*33 0.68 TCGA-HW-A5KJ-01 1 90049110 90049110 C T LRRC8B Missense_Mutation p.R301C 0.61 tolerated(0.18) probably_damaging(0.99) TCGA-HW-A5KJ-01 20 3841977 3841977 A G MAVS Splice_Site p.X98_splice 0.36 TCGA-HW-A5KJ-01 21 28210518 28210518 T A ADAMTS1 Missense_Mutation p.R762W 0.48 tolerated(0.08) probably_damaging(0.999) TCGA-HW-A5KJ-01 21 39774503 39774503 G A ERG Missense_Mutation p.R224W 0.27 tolerated(0.15) probably_damaging(0.937) TCGA-HW-A5KJ-01 22 22869694 22869694 C T ZNF280A Silent p.S87S 0.37 TCGA-HW-A5KJ-01 22 24718811 24718812 TT - SPECC1L Frame_Shift_Del p.L622Gfs*2 0.25 TCGA-HW-A5KJ-01 22 38379483 38379483 G A SOX10 Silent p.H103H 0.09 TCGA-HW-A5KJ-01 22 45127647 45127649 CTT - PRR5 In_Frame_Del p.F146del 0.10 TCGA-HW-A5KJ-01 2 135920344 135920346 AAG - RAB3GAP1 In_Frame_Del p.K806del 0.34 TCGA-HW-A5KJ-01 2 166245292 166245292 C A SCN2A Missense_Mutation p.A1659E 0.34 deleterious(0) probably_damaging(0.942) TCGA-HW-A5KJ-01 2 174774916 174774917 AT - SP3 Frame_Shift_Del p.I700* 0.32 TCGA-HW-A5KJ-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-A5KJ-01 2 28550157 28550158 AG - BRE Frame_Shift_Del p.D370Cfs*152 0.29 TCGA-HW-A5KJ-01 3 114058229 114058231 AGG - ZBTB20 In_Frame_Del p.S616del 0.36 TCGA-HW-A5KJ-01 4 173961139 173961141 AGA - GALNTL6 In_Frame_Del p.K567del 0.35 TCGA-HW-A5KJ-01 5 150867793 150867793 A G SLC36A1 Missense_Mutation p.N470S 0.38 deleterious(0.02) benign(0.259) TCGA-HW-A5KJ-01 5 156770389 156770391 CTC - FNDC9 In_Frame_Del p.E52del 0.38 TCGA-HW-A5KJ-01 5 168093480 168093480 G A SLIT3 Silent p.C1517C 0.31 TCGA-HW-A5KJ-01 6 131277495 131277497 TCC - EPB41L2 In_Frame_Del p.E44del 0.38 TCGA-HW-A5KJ-01 7 104717788 104717789 AA - KMT2E Frame_Shift_Del p.K347Rfs*5 0.37 TCGA-HW-A5KJ-01 7 129761996 129761996 A G KLHDC10 Missense_Mutation p.T245A 0.55 tolerated(0.57) benign(0.078) TCGA-HW-A5KJ-01 7 143079693 143079695 AGA - ZYX In_Frame_Del p.K140del 0.19 TCGA-HW-A5KJ-01 8 124789562 124789563 TG - FAM91A1 Splice_Site p.X123_splice 0.19 TCGA-HW-A5KJ-01 8 24813443 24813443 C T CTD-2168K21.2 5'Flank 0.07 TCGA-HW-A5KJ-01 9 139413073 139413075 AGG - NOTCH1 In_Frame_Del p.S356del 0.65 TCGA-HW-A5KJ-01 9 35560631 35560633 GAG - RUSC2 In_Frame_Del p.E1333del 0.40 TCGA-HW-A5KJ-01 9 35663036 35663037 CT - ARHGEF39 Frame_Shift_Del p.R193Sfs*11 0.34 TCGA-HW-A5KJ-01 X 39934072 39934075 TGTT - BCOR Frame_Shift_Del p.K175Rfs*40 0.10 TCGA-HW-A5KK-01 11 130332501 130332501 C T ADAMTS15 Silent p.S456S 0.12 TCGA-HW-A5KK-01 11 19970369 19970369 C T NAV2 Silent p.D819D 0.13 TCGA-HW-A5KK-01 12 11420209 11420209 G A PRB3 Missense_Mutation p.P283S 0.14 tolerated_low_confidence(0.13) unknown(0) TCGA-HW-A5KK-01 12 53468957 53468957 A C SPRYD3 Missense_Mutation p.L98R 0.13 deleterious(0) probably_damaging(0.991) TCGA-HW-A5KK-01 12 86374059 86374059 G A MGAT4C Missense_Mutation p.R149C 0.13 tolerated(0.25) benign(0.002) TCGA-HW-A5KK-01 14 65239642 65239642 G A SPTB Missense_Mutation p.R1737W 0.10 deleterious(0) probably_damaging(0.982) TCGA-HW-A5KK-01 15 21071312 21071312 C T POTEB2 Missense_Mutation p.R100Q 0.11 tolerated(0.5) possibly_damaging(0.855) TCGA-HW-A5KK-01 16 67268290 67268290 C T FHOD1 Missense_Mutation p.A469T 0.07 tolerated(0.07) benign(0.005) TCGA-HW-A5KK-01 17 26817446 26817446 C T SLC13A2 Missense_Mutation p.P118L 0.14 tolerated(0.88) benign(0) TCGA-HW-A5KK-01 17 30349672 30349672 G A LRRC37B Missense_Mutation p.V503M 0.17 tolerated(0.14) possibly_damaging(0.53) TCGA-HW-A5KK-01 18 22805969 22805969 T G ZNF521 Missense_Mutation p.Q638P 0.14 deleterious(0) probably_damaging(0.993) TCGA-HW-A5KK-01 18 61569789 61569789 C G SERPINB2 Missense_Mutation p.T277S 0.07 tolerated(0.07) possibly_damaging(0.841) TCGA-HW-A5KK-01 19 37155655 37155655 C G ZNF461 5'UTR 0.14 TCGA-HW-A5KK-01 19 48229108 48229108 G A EHD2 Missense_Mutation p.R181H 0.17 deleterious(0.05) benign(0.262) TCGA-HW-A5KK-01 19 9646905 9646905 C T ZNF426 Missense_Mutation p.A2T 0.12 tolerated(0.07) benign(0.049) TCGA-HW-A5KK-01 1 156314492 156314492 G - TSACC Frame_Shift_Del p.S54Rfs*10 0.10 TCGA-HW-A5KK-01 1 181724388 181724388 G A CACNA1E Missense_Mutation p.V1282I 0.16 tolerated(0.05) benign(0.044) TCGA-HW-A5KK-01 1 228430986 228430986 C T OBSCN Missense_Mutation p.T1103M 0.11 benign(0.085) TCGA-HW-A5KK-01 1 26360306 26360306 C T EXTL1 Silent p.N546N 0.18 TCGA-HW-A5KK-01 1 39876726 39876726 A G KIAA0754 Silent p.T127T 0.24 TCGA-HW-A5KK-01 20 34059913 34059913 T C CEP250 Silent p.S329S 0.14 TCGA-HW-A5KK-01 20 61833842 61833842 C T YTHDF1 Missense_Mutation p.V484I 0.16 deleterious(0.01) possibly_damaging(0.874) TCGA-HW-A5KK-01 22 21347144 21347144 G A LZTR1 Missense_Mutation p.G404E 0.25 deleterious(0) probably_damaging(0.996) TCGA-HW-A5KK-01 22 37637140 37637140 C T RAC2 Intron 0.17 TCGA-HW-A5KK-01 2 131521800 131521800 C T AMER3 Nonsense_Mutation p.Q719* 0.20 TCGA-HW-A5KK-01 2 197708797 197708797 A G PGAP1 Silent p.N780N 0.15 TCGA-HW-A5KK-01 2 216288193 216288193 G C FN1 Missense_Mutation p.L425V 0.10 tolerated(0.06) probably_damaging(0.983) TCGA-HW-A5KK-01 2 216288199 216288199 G T FN1 Missense_Mutation p.P423T 0.10 deleterious(0) probably_damaging(0.999) TCGA-HW-A5KK-01 2 85818866 85818866 C T VAMP5 Missense_Mutation p.R8W 0.17 deleterious(0) probably_damaging(0.959) TCGA-HW-A5KK-01 3 139085462 139085462 G A COPB2 Missense_Mutation p.P611L 0.19 deleterious(0) probably_damaging(0.943) TCGA-HW-A5KK-01 3 25470378 25470378 A G RARB Silent p.Q52Q 0.14 TCGA-HW-A5KK-01 3 48678778 48678778 G A CELSR3 Missense_Mutation p.R3002W 0.17 deleterious_low_confidence(0) benign(0.339) TCGA-HW-A5KK-01 4 100822294 100822294 T C DNAJB14 Missense_Mutation p.Y344C 0.11 deleterious(0.02) probably_damaging(0.961) TCGA-HW-A5KK-01 4 96046194 96046194 C - BMPR1B Frame_Shift_Del p.Y199* 0.18 TCGA-HW-A5KK-01 5 130726799 130726799 C G CDC42SE2 3'UTR 0.13 TCGA-HW-A5KK-01 5 148617131 148617131 T C ABLIM3 Missense_Mutation p.S337P 0.19 tolerated(0.07) possibly_damaging(0.905) TCGA-HW-A5KK-01 5 160049524 160049524 G T ATP10B Silent p.T563T 0.17 TCGA-HW-A5KK-01 5 180326208 180326208 C T BTNL8 5'UTR 0.19 TCGA-HW-A5KK-01 5 95233957 95233961 TGGAC - ELL2 Frame_Shift_Del p.S503Kfs*7 0.14 TCGA-HW-A5KK-01 6 136710581 136710581 T A MAP7 Nonsense_Mutation p.K129* 0.15 TCGA-HW-A5KK-01 6 152651648 152651648 C T SYNE1 Silent p.A4724A 0.14 TCGA-HW-A5KK-01 6 167786722 167786722 C T TCP10 Missense_Mutation p.G306S 0.07 tolerated(0.3) benign(0.001) TCGA-HW-A5KK-01 6 51897876 51897876 A T PKHD1 Missense_Mutation p.L1106I 0.10 tolerated(0.08) possibly_damaging(0.899) TCGA-HW-A5KK-01 7 40102644 40102644 A G CDK13 Missense_Mutation p.T909A 0.17 deleterious(0.02) probably_damaging(0.992) TCGA-HW-A5KK-01 7 53103839 53103839 C T POM121L12 Missense_Mutation p.R159C 0.18 tolerated(0.12) probably_damaging(0.942) TCGA-HW-A5KK-01 8 144642132 144642132 C T GSDMD Missense_Mutation p.H135Y 0.13 deleterious(0.01) benign(0.359) TCGA-HW-A5KK-01 8 144645068 144645068 C A GSDMD Silent p.P483P 0.14 TCGA-HW-A5KK-01 8 42259491 42259491 C T VDAC3 Missense_Mutation p.A171V 0.12 tolerated(0.07) possibly_damaging(0.459) TCGA-HW-A5KK-01 9 131298722 131298722 G A GLE1 Missense_Mutation p.A579T 0.07 deleterious(0) probably_damaging(0.994) TCGA-HW-A5KK-01 9 19786146 19786146 C G SLC24A2 Missense_Mutation p.R240P 0.11 deleterious(0) probably_damaging(1) TCGA-HW-A5KK-01 X 140786652 140786652 A G SPANXD 5'UTR 0.27 TCGA-HW-A5KL-01 11 43423074 43423074 G A TTC17 Missense_Mutation p.R433H 0.30 tolerated(0.09) possibly_damaging(0.794) TCGA-HW-A5KL-01 12 30827606 30827606 G A IPO8 Missense_Mutation p.R271W 0.37 deleterious(0) probably_damaging(0.988) TCGA-HW-A5KL-01 14 39644440 39644440 C G PNN 5'UTR 0.12 TCGA-HW-A5KL-01 14 45645153 45645153 C G FANCM Missense_Mutation p.L1066V 0.11 tolerated(0.12) benign(0.002) TCGA-HW-A5KL-01 14 63858726 63858730 TACTA - PPP2R5E Frame_Shift_Del p.I288Tfs*15 0.35 TCGA-HW-A5KL-01 16 1718033 1718033 C T CRAMP1L Missense_Mutation p.S1058F 0.33 deleterious(0.01) benign(0.188) TCGA-HW-A5KL-01 16 17202869 17202869 C T XYLT1 Missense_Mutation p.A855T 0.56 tolerated(0.18) benign(0.019) TCGA-HW-A5KL-01 17 7577586 7577586 A C TP53 Missense_Mutation p.I232S 0.82 deleterious(0) probably_damaging(0.966) TCGA-HW-A5KL-01 19 17476154 17476154 G C PLVAP Missense_Mutation p.Q374E 0.38 deleterious(0.04) possibly_damaging(0.527) TCGA-HW-A5KL-01 19 41515236 41515236 G A CYP2B6 Missense_Mutation p.R253H 0.33 deleterious(0.02) benign(0.073) TCGA-HW-A5KL-01 1 116577849 116577849 C T SLC22A15 Missense_Mutation p.A329V 0.05 tolerated(0.23) benign(0.003) TCGA-HW-A5KL-01 1 197060134 197060134 A G ASPM Missense_Mutation p.I3161T 0.07 tolerated(0.15) benign(0.15) TCGA-HW-A5KL-01 21 39755828 39755828 G A ERG Missense_Mutation p.L320F 0.05 deleterious(0) probably_damaging(1) TCGA-HW-A5KL-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-A5KL-01 3 14535207 14535207 C T SLC6A6 3'Flank 0.53 TCGA-HW-A5KL-01 7 135418932 135418932 G A FAM180A Missense_Mutation p.R105C 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-HW-A5KL-01 X 125299672 125299672 G A DCAF12L2 Missense_Mutation p.A79V 0.32 tolerated(0.15) benign(0.033) TCGA-HW-A5KL-01 X 140785839 140785839 G A SPANXD Missense_Mutation p.P26L 0.04 tolerated(0.29) probably_damaging(0.999) TCGA-HW-A5KL-01 X 153039467 153039467 C A PLXNB3 Missense_Mutation p.Q1168K 0.30 tolerated(0.38) benign(0.173) TCGA-HW-A5KL-01 X 44120532 44120532 C T EFHC2 Missense_Mutation p.R132Q 0.41 tolerated(0.06) benign(0.337) TCGA-HW-A5KL-01 X 55052378 55052378 G A ALAS2 Missense_Mutation p.T19I 0.18 tolerated(0.14) benign(0.008) TCGA-HW-A5KL-01 X 56590705 56590705 C T UBQLN2 Silent p.S133S 0.11 TCGA-HW-A5KL-01 X 73812199 73812200 - G RLIM Frame_Shift_Ins p.T318Nfs*5 0.31 TCGA-HW-A5KL-01 X 76939961 76939961 A G ATRX Missense_Mutation p.W263R 0.53 probably_damaging(0.999) TCGA-HW-A5KM-01 11 121428040 121428040 C T SORL1 Silent p.G863G 0.03 TCGA-HW-A5KM-01 11 20628628 20628628 G A SLC6A5 Missense_Mutation p.G252D 0.33 deleterious(0) probably_damaging(1) TCGA-HW-A5KM-01 12 113448007 113448007 G A OAS2 Intron 0.23 TCGA-HW-A5KM-01 12 64011112 64011112 T G DPY19L2 Missense_Mutation p.Y397S 0.27 deleterious(0.01) probably_damaging(0.937) TCGA-HW-A5KM-01 13 20077367 20077367 T C TPTE2 Missense_Mutation p.E3G 0.08 tolerated_low_confidence(0.32) benign(0) TCGA-HW-A5KM-01 13 95840746 95840746 G A ABCC4 Silent p.G438G 0.35 TCGA-HW-A5KM-01 17 34499227 34499227 G A TBC1D3B Nonsense_Mutation p.R162* 0.12 TCGA-HW-A5KM-01 17 43323638 43323640 AGA - FMNL1 In_Frame_Del p.K1052del 0.36 TCGA-HW-A5KM-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.75 deleterious(0) probably_damaging(0.998) TCGA-HW-A5KM-01 19 56109002 56109002 C T FIZ1 Missense_Mutation p.R77Q 0.44 deleterious(0.01) unknown(0) TCGA-HW-A5KM-01 1 115453058 115453058 A G SYCP1 Missense_Mutation p.E454G 0.36 deleterious(0) probably_damaging(1) TCGA-HW-A5KM-01 1 166831463 166831463 A C TADA1 Missense_Mutation p.S173A 0.33 tolerated(0.48) benign(0.021) TCGA-HW-A5KM-01 1 227172955 227172955 A G ADCK3 Missense_Mutation p.I525V 0.09 tolerated(0.98) benign(0.002) TCGA-HW-A5KM-01 21 10973726 10973726 T C TPTE Missense_Mutation p.E3G 0.19 deleterious_low_confidence(0.02) benign(0.005) TCGA-HW-A5KM-01 2 163124612 163124612 A T IFIH1 Missense_Mutation p.M931K 0.07 deleterious(0) benign(0.081) TCGA-HW-A5KM-01 2 189839160 189839160 G C COL3A1 5'UTR 0.18 TCGA-HW-A5KM-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-HW-A5KM-01 3 114014405 114014405 C G TIGIT Silent p.G25G 0.29 TCGA-HW-A5KM-01 4 111464025 111464025 G A ENPEP Silent p.A642A 0.09 TCGA-HW-A5KM-01 7 107692592 107692592 A G LAMB4 Missense_Mutation p.L1289P 0.36 deleterious(0) probably_damaging(0.935) TCGA-HW-A5KM-01 7 112112895 112112897 GAA - IFRD1 In_Frame_Del p.K416del 0.28 TCGA-HW-A5KM-01 8 22102541 22102541 C G POLR3D 5'Flank 0.33 TCGA-HW-A5KM-01 9 97063233 97063233 C T ZNF169 Missense_Mutation p.R465C 0.35 deleterious(0.02) possibly_damaging(0.8) TCGA-HW-A5KM-01 X 76937664 76937697 AAAATGACAAATTTCTTCTCGCTCAGGTAACTTT - ATRX Frame_Shift_Del p.E1017Dfs*5 0.80 TCGA-IK-7675-01 11 46456428 46456429 - GGTTATGGGG AMBRA1 Nonsense_Mutation p.L841Pfs*3 0.39 TCGA-IK-7675-01 11 56468238 56468238 C T OR9G1 Silent p.I125I 0.04 TCGA-IK-7675-01 11 65403262 65403262 G A PCNXL3 Missense_Mutation p.R1816H 0.53 tolerated(0.09) benign(0.03) TCGA-IK-7675-01 12 19475547 19475547 T C PLEKHA5 Silent p.D798D 0.49 TCGA-IK-7675-01 12 4383195 4383195 G A CCND2 5'UTR 0.17 TCGA-IK-7675-01 13 42293731 42293731 T C VWA8 Missense_Mutation p.K1038E 0.50 tolerated(0.06) benign(0.145) TCGA-IK-7675-01 14 51378586 51378586 C T PYGL Missense_Mutation p.A611T 0.39 deleterious(0) probably_damaging(0.998) TCGA-IK-7675-01 15 102264496 102264496 A G TARSL2 Missense_Mutation p.L32P 0.13 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-IK-7675-01 15 64966267 64966267 C G ZNF609 Missense_Mutation p.A405G 0.38 tolerated(0.07) benign(0.161) TCGA-IK-7675-01 16 23491094 23491094 G T GGA2 Missense_Mutation p.A374E 0.13 tolerated(1) benign(0.003) TCGA-IK-7675-01 16 48145730 48145730 C T ABCC12 Missense_Mutation p.R694H 0.32 tolerated(0.16) benign(0.004) TCGA-IK-7675-01 17 1637326 1637326 C T WDR81 Silent p.S1665S 0.40 TCGA-IK-7675-01 17 38320314 38320314 G T CASC3 Missense_Mutation p.D456Y 0.48 deleterious_low_confidence(0.02) benign(0.02) TCGA-IK-7675-01 17 41059590 41059590 G A G6PC Missense_Mutation p.V131I 0.34 tolerated(0.29) probably_damaging(0.968) TCGA-IK-7675-01 17 5257698 5257698 A G RABEP1 Silent p.K336K 0.49 TCGA-IK-7675-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.85 deleterious(0) probably_damaging(0.998) TCGA-IK-7675-01 19 14077272 14077272 T C RFX1 Missense_Mutation p.Y641C 0.46 tolerated(0.05) benign(0.009) TCGA-IK-7675-01 19 49227649 49227649 C T RASIP1 Missense_Mutation p.R830Q 0.44 tolerated(0.6) possibly_damaging(0.598) TCGA-IK-7675-01 1 120468319 120468319 A T NOTCH2 Missense_Mutation p.C1374S 0.55 tolerated(0.07) possibly_damaging(0.629) TCGA-IK-7675-01 1 168205989 168205989 C T SFT2D2 Nonsense_Mutation p.Q132* 0.43 TCGA-IK-7675-01 1 186292829 186292829 G A TPR Missense_Mutation p.P2096S 0.36 possibly_damaging(0.596) TCGA-IK-7675-01 1 217915355 217915355 A G SPATA17 Missense_Mutation p.E145G 0.53 deleterious(0) probably_damaging(0.91) TCGA-IK-7675-01 1 248202456 248202456 T C OR2L2 Missense_Mutation p.V296A 0.43 deleterious(0) benign(0.356) TCGA-IK-7675-01 1 248801843 248801843 A T OR2T35 Silent p.A239A 0.22 TCGA-IK-7675-01 20 42788430 42788430 C T JPH2 Missense_Mutation p.D333N 0.58 deleterious(0.02) probably_damaging(0.967) TCGA-IK-7675-01 21 32007647 32007647 A G KRTAP20-2 Missense_Mutation p.Y22C 0.49 unknown(0) TCGA-IK-7675-01 2 189933563 189933563 C T COL5A2 Silent p.G402G 0.38 TCGA-IK-7675-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-IK-7675-01 2 227661149 227661149 C T IRS1 Missense_Mutation p.R769K 0.45 deleterious(0.01) benign(0.049) TCGA-IK-7675-01 3 38768259 38768259 T C SCN10A Silent p.Q975Q 0.41 TCGA-IK-7675-01 4 1018108 1018108 G A FGFRL1 Missense_Mutation p.R243H 0.44 deleterious(0.05) possibly_damaging(0.749) TCGA-IK-7675-01 4 145032483 145032483 T G GYPA 3'UTR 0.43 TCGA-IK-7675-01 4 5586352 5586352 G A EVC2 Missense_Mutation p.R1019W 0.48 deleterious(0.01) possibly_damaging(0.517) TCGA-IK-7675-01 4 74316388 74316388 C T AFP Missense_Mutation p.A449V 0.47 tolerated(0.12) benign(0.044) TCGA-IK-7675-01 4 99030425 99030425 C A STPG2 Missense_Mutation p.G140V 0.39 deleterious(0) probably_damaging(0.999) TCGA-IK-7675-01 5 41070936 41070936 C A MROH2B Nonsense_Mutation p.E7* 0.39 TCGA-IK-7675-01 6 31379973 31379973 G A MICA Missense_Mutation p.G288E 0.05 deleterious(0.03) benign(0.285) TCGA-IK-7675-01 6 32974943 32974943 A G HLA-DOA Silent p.C221C 0.39 TCGA-IK-7675-01 6 51892645 51892645 A G PKHD1 Missense_Mutation p.C1204R 0.34 deleterious(0.04) benign(0.35) TCGA-IK-7675-01 7 71135022 71135022 G C WBSCR17 Missense_Mutation p.K444N 0.37 deleterious(0.01) probably_damaging(0.981) TCGA-IK-7675-01 8 24151678 24151678 C G ADAM28 Missense_Mutation p.L6V 0.48 deleterious(0.02) benign(0.364) TCGA-IK-7675-01 9 113275228 113275228 G A SVEP1 Silent p.S427S 0.38 TCGA-IK-7675-01 9 125316257 125316257 G T OR1N2 Missense_Mutation p.G270V 0.49 deleterious(0) benign(0.307) TCGA-IK-7675-01 9 19093229 19093229 G A HAUS6 Missense_Mutation p.H126Y 0.12 deleterious(0) probably_damaging(0.953) TCGA-IK-7675-01 9 19093264 19093264 G C HAUS6 Nonsense_Mutation p.S114* 0.18 TCGA-IK-7675-01 9 39140572 39140572 A C CNTNAP3 Missense_Mutation p.I607S 0.47 deleterious(0.01) possibly_damaging(0.558) TCGA-IK-7675-01 X 14863149 14863149 G A FANCB Missense_Mutation p.P586S 0.86 deleterious(0) probably_damaging(0.995) TCGA-IK-7675-01 X 16170454 16170454 C A GRPR Missense_Mutation p.H281N 0.89 deleterious(0) probably_damaging(0.999) TCGA-IK-7675-01 X 76937611 76937615 CTTTT - ATRX Frame_Shift_Del p.K1045* 0.63 TCGA-IK-8125-01 10 108389108 108389108 G A SORCS1 Silent p.G838G 0.11 TCGA-IK-8125-01 10 24832988 24832988 A T KIAA1217 Nonsense_Mutation p.K1597* 0.10 TCGA-IK-8125-01 10 75457306 75457306 G A AGAP5 Nonsense_Mutation p.Q70* 0.07 TCGA-IK-8125-01 10 96352241 96352241 G A HELLS Silent p.G647G 0.20 TCGA-IK-8125-01 10 98764460 98764460 C T SLIT1 Missense_Mutation p.A1234T 0.19 tolerated(1) probably_damaging(0.982) TCGA-IK-8125-01 11 111835363 111835363 C T DIXDC1 Missense_Mutation p.R51W 0.44 deleterious(0) probably_damaging(0.998) TCGA-IK-8125-01 11 113215006 113215006 G A TTC12 Missense_Mutation p.R333H 0.36 tolerated(0.1) benign(0.071) TCGA-IK-8125-01 11 134228963 134228988 GACCGTGGCATTGTGGAACTGCTCCT - GLB1L2 Frame_Shift_Del p.R222Ffs*54 0.20 TCGA-IK-8125-01 12 114793348 114793348 C T TBX5 Missense_Mutation p.D516N 0.12 deleterious_low_confidence(0.01) benign(0.007) TCGA-IK-8125-01 12 53877509 53877509 T A MAP3K12 Splice_Site p.X453_splice 0.12 TCGA-IK-8125-01 15 31359319 31359319 C T TRPM1 Missense_Mutation p.G206R 0.42 deleterious(0) probably_damaging(1) TCGA-IK-8125-01 15 51017471 51017471 C G SPPL2A Missense_Mutation p.S399T 0.31 tolerated(0.86) benign(0.009) TCGA-IK-8125-01 15 63336271 63336271 G A TPM1 Missense_Mutation p.E54K 0.26 deleterious(0.02) possibly_damaging(0.849) TCGA-IK-8125-01 15 73428355 73428355 G C NEO1 Missense_Mutation p.E334D 0.33 tolerated(0.2) benign(0.001) TCGA-IK-8125-01 17 3366004 3366004 G A SPATA22 Missense_Mutation p.T77I 0.04 deleterious(0.03) benign(0.187) TCGA-IK-8125-01 18 45422914 45422914 T C SMAD2 Missense_Mutation p.T72A 0.08 deleterious(0.03) possibly_damaging(0.521) TCGA-IK-8125-01 19 12154973 12154973 G A ZNF878 Nonsense_Mutation p.R415* 0.27 TCGA-IK-8125-01 19 15299837 15299837 G A NOTCH3 Silent p.L447L 0.20 TCGA-IK-8125-01 19 3964722 3964722 C T DAPK3 Silent p.S110S 0.12 TCGA-IK-8125-01 19 42797750 42797750 A - CIC Frame_Shift_Del p.K1268Nfs*34 0.43 TCGA-IK-8125-01 19 49845721 49845721 C T TEAD2 Missense_Mutation p.V406I 0.46 tolerated(0.05) benign(0.22) TCGA-IK-8125-01 19 56175034 56175034 G C U2AF2 Missense_Mutation p.Q222H 0.09 deleterious(0.01) probably_damaging(0.917) TCGA-IK-8125-01 19 6718386 6718386 C T C3 Missense_Mutation p.R102H 0.06 tolerated(0.24) benign(0.001) TCGA-IK-8125-01 1 108328110 108328110 C T VAV3 Intron 0.12 TCGA-IK-8125-01 1 110584240 110584240 C T STRIP1 Missense_Mutation p.R245W 0.09 deleterious(0.01) probably_damaging(0.938) TCGA-IK-8125-01 1 152733157 152733157 G A KPRP Missense_Mutation p.A365T 0.14 tolerated(0.48) benign(0.002) TCGA-IK-8125-01 1 171511013 171511013 C G PRRC2C Missense_Mutation p.P1468A 0.08 unknown(0) TCGA-IK-8125-01 1 213134633 213134633 G A VASH2 Intron 0.09 TCGA-IK-8125-01 1 240070879 240070879 C T CHRM3 Missense_Mutation p.S43F 0.05 tolerated(0.07) benign(0.002) TCGA-IK-8125-01 1 91781979 91781980 - T HFM1 Frame_Shift_Ins p.I956Nfs*10 0.59 TCGA-IK-8125-01 20 31659936 31659936 C T BPIFB3 Silent p.S429S 0.13 TCGA-IK-8125-01 21 46909433 46909433 A G COL18A1 Missense_Mutation p.K833E 0.43 possibly_damaging(0.73) TCGA-IK-8125-01 22 44489821 44489821 G A PARVB Silent p.Q75Q 0.33 TCGA-IK-8125-01 2 137814593 137814593 G A THSD7B Nonsense_Mutation p.W248* 0.40 TCGA-IK-8125-01 2 179634978 179634978 C G TTN Missense_Mutation p.S2817T 0.08 TCGA-IK-8125-01 2 179720137 179720137 T G CCDC141 Missense_Mutation p.K999N 0.09 deleterious(0.02) possibly_damaging(0.667) TCGA-IK-8125-01 2 192257829 192257829 C T MYO1B Missense_Mutation p.R703C 0.07 tolerated(0.11) benign(0.005) TCGA-IK-8125-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-IK-8125-01 2 233759484 233759484 A G NGEF Missense_Mutation p.V324A 0.30 deleterious(0) probably_damaging(0.91) TCGA-IK-8125-01 3 100523693 100523693 G A ABI3BP Missense_Mutation p.R564C 0.24 deleterious(0.02) probably_damaging(0.973) TCGA-IK-8125-01 3 194407600 194407600 G A FAM43A Silent p.A15A 0.13 TCGA-IK-8125-01 3 58097875 58097875 G A FLNB Splice_Site p.X859_splice 0.38 TCGA-IK-8125-01 3 97596597 97596597 C T CRYBG3 Nonsense_Mutation p.Q239* 0.34 TCGA-IK-8125-01 4 164050323 164050323 T C NAF1 Missense_Mutation p.Q404R 0.16 deleterious(0.02) benign(0.332) TCGA-IK-8125-01 4 187521295 187521295 C T FAT1 Missense_Mutation p.G3954S 0.10 probably_damaging(1) TCGA-IK-8125-01 4 71508741 71508741 C T ENAM Missense_Mutation p.T533I 0.34 tolerated(0.18) benign(0.085) TCGA-IK-8125-01 4 90168895 90168895 G A GPRIN3 3'UTR 0.26 TCGA-IK-8125-01 5 179192669 179192669 C T MAML1 Missense_Mutation p.P220S 0.09 deleterious(0) probably_damaging(1) TCGA-IK-8125-01 6 32166813 32166813 G A NOTCH4 Silent p.R1475R 0.42 TCGA-IK-8125-01 6 32190325 32190325 C T NOTCH4 Silent p.S138S 0.09 TCGA-IK-8125-01 6 36262065 36262065 C A PNPLA1 Silent p.P201P 0.16 TCGA-IK-8125-01 6 42974286 42974286 C T PPP2R5D Missense_Mutation p.P64L 0.37 deleterious(0) probably_damaging(0.972) TCGA-IK-8125-01 6 43251409 43251409 G A TTBK1 Silent p.A977A 0.46 TCGA-IK-8125-01 6 43275627 43275627 C T CRIP3 Missense_Mutation p.G49E 0.10 deleterious(0) probably_damaging(1) TCGA-IK-8125-01 6 50681705 50681705 T G TFAP2D 5'UTR 0.38 TCGA-IK-8125-01 6 87943087 87943087 A G ZNF292 Missense_Mutation p.R195G 0.27 deleterious(0) probably_damaging(0.999) TCGA-IK-8125-01 8 144995732 144995732 C T PLEC Missense_Mutation p.A2890T 0.41 probably_damaging(0.969) TCGA-IK-8125-01 8 92972658 92972658 C G RUNX1T1 Missense_Mutation p.D554H 0.19 deleterious(0) probably_damaging(0.999) TCGA-IK-8125-01 9 130570869 130570869 C G FPGS Silent p.A285A 0.42 TCGA-IK-8125-01 9 139412597 139412597 C A NOTCH1 Missense_Mutation p.C416F 0.47 deleterious(0) probably_damaging(1) TCGA-IK-8125-01 9 33221060 33221060 G A SPINK4 Silent p.S28S 0.10 TCGA-IK-8125-01 9 36249251 36249251 G A GNE Silent p.T65T 0.12 TCGA-IK-8125-01 9 75520933 75520933 G A ALDH1A1 Silent p.G458G 0.14 TCGA-IK-8125-01 X 111914414 111914414 G A LHFPL1 Missense_Mutation p.R69C 0.34 deleterious(0) probably_damaging(0.998) TCGA-IK-8125-01 X 152037637 152037637 C T NSDHL Missense_Mutation p.R367C 0.26 tolerated(0.05) benign(0.39) TCGA-IK-8125-01 X 48339829 48339829 G T FTSJ1 Missense_Mutation p.D162Y 0.75 deleterious(0) probably_damaging(0.94) TCGA-IK-8125-01 Y 9197030 9197030 G A TSPY8 Intron 0.05 TCGA-KT-A74X-01 10 23326258 23326258 G A ARMC3 Silent p.A823A 0.05 TCGA-KT-A74X-01 10 98715754 98715754 C T LCOR 3'UTR 0.42 TCGA-KT-A74X-01 11 8252034 8252034 C T LMO1 Missense_Mutation p.V15I 0.15 tolerated(0.16) benign(0.104) TCGA-KT-A74X-01 13 50276551 50276551 T A KPNA3 Missense_Mutation p.I480F 0.27 deleterious(0) probably_damaging(0.917) TCGA-KT-A74X-01 19 42791758 42791758 G A CIC Missense_Mutation p.R215Q 0.73 probably_damaging(0.999) TCGA-KT-A74X-01 19 571470 571470 C G BSG 5'Flank 0.69 TCGA-KT-A74X-01 20 32856864 32856864 G T ASIP Missense_Mutation p.R97L 0.27 tolerated(0.69) probably_damaging(0.982) TCGA-KT-A74X-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-KT-A74X-01 5 67589623 67589634 ATATGATAGATT - PIK3R1 In_Frame_Del p.D464_Y467del 0.40 TCGA-KT-A74X-01 6 33172796 33172796 G A HSD17B8 Missense_Mutation p.G57E 0.30 tolerated(0.19) benign(0.102) TCGA-KT-A74X-01 6 35980123 35980123 C T SLC26A8 Missense_Mutation p.C72Y 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-KT-A74X-01 6 47647929 47647929 T C GPR111 Silent p.I198I 0.41 TCGA-KT-A74X-01 7 105148879 105148879 A G PUS7 Silent p.V27V 0.48 TCGA-KT-A74X-01 7 135073582 135073582 T C CNOT4 Intron 0.53 TCGA-KT-A74X-01 9 107535438 107535438 G A NIPSNAP3B 3'UTR 0.58 TCGA-KT-A74X-01 X 84362997 84362997 C T SATL1 Silent p.R326R 0.81 TCGA-KT-A7W1-01 11 102937266 102937266 T C DCUN1D5 Silent p.K124K 0.45 TCGA-KT-A7W1-01 11 4703280 4703280 A G OR51E2 Missense_Mutation p.I221T 0.32 deleterious(0) possibly_damaging(0.486) TCGA-KT-A7W1-01 11 48328178 48328178 A G OR4S1 Missense_Mutation p.D135G 0.51 deleterious(0.03) benign(0) TCGA-KT-A7W1-01 12 108589547 108589547 C T WSCD2 5'UTR 0.42 TCGA-KT-A7W1-01 12 130184803 130184803 G A TMEM132D Nonsense_Mutation p.R174* 0.53 TCGA-KT-A7W1-01 12 69222647 69222647 T A MDM2 Missense_Mutation p.V207E 0.47 deleterious(0.01) probably_damaging(0.991) TCGA-KT-A7W1-01 13 24465957 24465957 C A C1QTNF9B Missense_Mutation p.G158V 0.22 deleterious(0) probably_damaging(1) TCGA-KT-A7W1-01 13 41517272 41517272 T C ELF1 Missense_Mutation p.I208V 0.44 deleterious(0.02) probably_damaging(0.975) TCGA-KT-A7W1-01 14 73577739 73577739 C T RBM25 Silent p.G631G 0.11 TCGA-KT-A7W1-01 16 1396250 1396250 G A BAIAP3 Missense_Mutation p.G829E 0.53 tolerated(0.69) possibly_damaging(0.493) TCGA-KT-A7W1-01 16 20043248 20043248 G A GPR139 Missense_Mutation p.R291W 0.46 deleterious(0.03) probably_damaging(0.993) TCGA-KT-A7W1-01 16 70404224 70404224 G A DDX19A Silent p.A373A 0.32 TCGA-KT-A7W1-01 16 9857178 9857178 G A GRIN2A Missense_Mutation p.T1408M 0.37 deleterious(0.02) probably_damaging(0.987) TCGA-KT-A7W1-01 17 33802177 33802177 C T SLFN12L Missense_Mutation p.C511Y 0.37 deleterious(0.03) possibly_damaging(0.749) TCGA-KT-A7W1-01 17 39296556 39296556 G A KRTAP4-6 Missense_Mutation p.R62C 0.49 deleterious(0.02) unknown(0) TCGA-KT-A7W1-01 17 39680190 39680190 C T KRT19 Silent p.A336A 0.44 TCGA-KT-A7W1-01 17 4848111 4848111 G T RNF167 Nonsense_Mutation p.E285* 0.10 TCGA-KT-A7W1-01 18 44561077 44561077 C T TCEB3B Missense_Mutation p.A187T 0.43 tolerated(0.64) benign(0.091) TCGA-KT-A7W1-01 19 12059661 12059661 G A ZNF700 Silent p.G274G 0.27 TCGA-KT-A7W1-01 19 18245714 18245714 G A MAST3 Missense_Mutation p.V569I 0.21 tolerated(1) benign(0.002) TCGA-KT-A7W1-01 19 18958595 18958596 - A UPF1 Frame_Shift_Ins p.T139Nfs*64 0.26 TCGA-KT-A7W1-01 19 22848138 22848138 G A ZNF492 3'UTR 0.23 TCGA-KT-A7W1-01 19 44352638 44352638 C T ZNF283 Missense_Mutation p.R629C 0.11 tolerated(1) benign(0) TCGA-KT-A7W1-01 19 45858101 45858101 G A ERCC2 Missense_Mutation p.R518W 0.24 deleterious(0) probably_damaging(0.983) TCGA-KT-A7W1-01 19 47502609 47502609 A G ARHGAP35 Missense_Mutation p.K1362R 0.21 tolerated(0.58) benign(0.001) TCGA-KT-A7W1-01 19 48863392 48863392 C T TMEM143 Silent p.A102A 0.30 TCGA-KT-A7W1-01 1 198676002 198676002 A G PTPRC Silent p.E275E 0.35 TCGA-KT-A7W1-01 1 211307260 211307260 G A KCNH1 Silent p.L10L 0.36 TCGA-KT-A7W1-01 1 222695822 222695822 G A HHIPL2 3'UTR 0.47 TCGA-KT-A7W1-01 22 36960617 36960617 G A CACNG2 Silent p.D251D 0.08 TCGA-KT-A7W1-01 22 41621067 41621067 G A L3MBTL2 Missense_Mutation p.V450I 0.40 tolerated(0.3) benign(0.02) TCGA-KT-A7W1-01 2 10350625 10350625 G A C2orf48 Missense_Mutation p.A128T 0.31 tolerated_low_confidence(0.26) possibly_damaging(0.682) TCGA-KT-A7W1-01 2 179473345 179473345 T C TTN Missense_Mutation p.K17465E 0.35 TCGA-KT-A7W1-01 2 179495965 179495965 T A TTN Missense_Mutation p.I14604F 0.34 TCGA-KT-A7W1-01 2 33952822 33952822 G A AC009499.1 Intron 0.40 TCGA-KT-A7W1-01 3 178947827 178947827 G T PIK3CA Missense_Mutation p.C901F 0.42 deleterious(0) probably_damaging(1) TCGA-KT-A7W1-01 4 164394265 164394265 C A TKTL2 Nonsense_Mutation p.E208* 0.36 TCGA-KT-A7W1-01 4 189068385 189068385 C T TRIML1 Silent p.N422N 0.50 TCGA-KT-A7W1-01 4 40440525 40440525 C T RBM47 Missense_Mutation p.R129H 0.48 deleterious(0.03) benign(0.05) TCGA-KT-A7W1-01 4 88732645 88732645 C A IBSP Silent p.T179T 0.50 TCGA-KT-A7W1-01 5 137878624 137878624 C G ETF1 Intron 0.42 TCGA-KT-A7W1-01 5 140725296 140725296 G A PCDHGA3 Missense_Mutation p.A566T 0.43 tolerated_low_confidence(0.6) benign(0.007) TCGA-KT-A7W1-01 5 52779405 52779405 G A FST Missense_Mutation p.V117I 0.19 tolerated(0.18) probably_damaging(0.972) TCGA-KT-A7W1-01 5 7626306 7626306 C G ADCY2 Missense_Mutation p.I199M 0.38 deleterious(0.02) benign(0.035) TCGA-KT-A7W1-01 6 33665460 33665460 G T UQCC2 Silent p.P117P 0.41 TCGA-KT-A7W1-01 7 38725045 38725045 T C FAM183B 3'UTR 0.19 TCGA-KT-A7W1-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.02 deleterious(0.02) probably_damaging(0.974) TCGA-KT-A7W1-01 7 55241677 55241677 G A EGFR Missense_Mutation p.E709K 0.20 deleterious(0.01) possibly_damaging(0.811) TCGA-KT-A7W1-01 7 55241708 55241708 G A EGFR Missense_Mutation p.G719D 0.18 deleterious(0) probably_damaging(0.99) TCGA-KT-A7W1-01 8 17813249 17813249 C T PCM1 Intron 0.75 TCGA-KT-A7W1-01 8 54142151 54142151 G A OPRK1 Silent p.F283F 0.53 TCGA-KT-A7W1-01 9 139371999 139371999 G A SEC16A Silent p.S23S 0.31 TCGA-KT-A7W1-01 X 120181769 120181769 C T GLUD2 Silent p.G77G 0.47 TCGA-KT-A7W1-01 X 129060251 129060251 A T UTP14A Missense_Mutation p.K660I 0.38 deleterious(0) possibly_damaging(0.644) TCGA-KT-A7W1-01 X 135825938 135825938 G A ARHGEF6 Missense_Mutation p.T156M 0.48 deleterious_low_confidence(0) benign(0.021) TCGA-KT-A7W1-01 X 153069356 153069356 C T PDZD4 Missense_Mutation p.A588T 0.33 tolerated(0.12) benign(0.002) TCGA-KT-A7W1-01 X 153173283 153173283 C T ARHGAP4 Missense_Mutation p.R954H 0.64 deleterious_low_confidence(0.01) benign(0.232) TCGA-KT-A7W1-01 X 153217982 153217982 G A HCFC1 Missense_Mutation p.A1642V 0.49 deleterious_low_confidence(0.03) probably_damaging(0.959) TCGA-KT-A7W1-01 X 32834682 32834682 G A DMD Nonsense_Mutation p.R145* 0.37 TCGA-KT-A7W1-01 X 46466458 46466458 G T SLC9A7 Missense_Mutation p.L703M 0.55 deleterious(0.02) possibly_damaging(0.468) TCGA-P5-A5ET-01 10 6472890 6472890 C T PRKCQ Missense_Mutation p.R616Q 0.35 deleterious(0.01) probably_damaging(0.983) TCGA-P5-A5ET-01 11 120312904 120312904 G T ARHGEF12 Missense_Mutation p.R432L 0.37 deleterious(0.01) probably_damaging(0.929) TCGA-P5-A5ET-01 11 64665787 64665787 C T ATG2A Silent p.G1573G 0.51 TCGA-P5-A5ET-01 12 132547108 132547108 G A EP400 Silent p.Q2732Q 0.05 TCGA-P5-A5ET-01 12 1943920 1943920 C T LRTM2 3'UTR 0.40 TCGA-P5-A5ET-01 12 21797028 21797028 C T LDHB Missense_Mutation p.A88T 0.05 tolerated(0.06) benign(0.08) TCGA-P5-A5ET-01 15 52901049 52901049 T C FAM214A Missense_Mutation p.T688A 0.24 tolerated_low_confidence(0.12) benign(0.005) TCGA-P5-A5ET-01 17 27401655 27401657 AGA - TIAF1 5'UTR 0.60 TCGA-P5-A5ET-01 17 36872811 36872811 T A MLLT6 Missense_Mutation p.S410T 0.33 tolerated(0.4) unknown(0) TCGA-P5-A5ET-01 17 61498201 61498201 C T TANC2 Missense_Mutation p.P1620S 0.28 tolerated_low_confidence(1) benign(0) TCGA-P5-A5ET-01 17 66246612 66246612 G A AMZ2 Splice_Site p.X95_splice 0.08 TCGA-P5-A5ET-01 17 79219799 79219799 G A SLC38A10 Nonsense_Mutation p.Q973* 0.41 TCGA-P5-A5ET-01 19 2226268 2226268 G A DOT1L Missense_Mutation p.D1250N 0.09 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-P5-A5ET-01 19 42814088 42814088 C T PRR19 Missense_Mutation p.P118S 0.18 tolerated(0.5) benign(0.007) TCGA-P5-A5ET-01 22 30683477 30683477 C T GATSL3 Missense_Mutation p.G86D 0.38 tolerated(0.2) possibly_damaging(0.794) TCGA-P5-A5ET-01 2 152409936 152409936 C T NEB Silent p.K6569K 0.33 TCGA-P5-A5ET-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A5ET-01 2 220136248 220136248 G A TUBA4B RNA 0.05 TCGA-P5-A5ET-01 3 114058232 114058234 AGA - ZBTB20 In_Frame_Del p.F615del 0.31 TCGA-P5-A5ET-01 3 129155397 129155399 CTT - MBD4 In_Frame_Del p.E363del 0.27 TCGA-P5-A5ET-01 3 16646810 16646810 G A DAZL 5'Flank 0.35 TCGA-P5-A5ET-01 3 48508260 48508261 TG - TREX1 Frame_Shift_Del p.V126Gfs*30 0.30 TCGA-P5-A5ET-01 5 55259245 55259245 T G IL6ST Missense_Mutation p.K250Q 0.11 tolerated(0.52) benign(0.002) TCGA-P5-A5ET-01 6 161528964 161528964 T G MAP3K4 Missense_Mutation p.I1361S 0.07 deleterious(0) probably_damaging(0.999) TCGA-P5-A5ET-01 6 170594119 170594119 A C DLL1 Silent p.G379G 0.06 TCGA-P5-A5ET-01 6 56336894 56336896 CTT - DST In_Frame_Del p.R4752del 0.39 TCGA-P5-A5ET-01 7 106836571 106836571 C G HBP1 Missense_Mutation p.Q454E 0.41 deleterious(0.02) probably_damaging(0.987) TCGA-P5-A5ET-01 7 87170760 87170762 ATC - ABCB1 In_Frame_Del p.D744del 0.08 TCGA-P5-A5ET-01 8 132968053 132968055 AAG - EFR3A In_Frame_Del p.E228del 0.31 TCGA-P5-A5ET-01 8 144803509 144803509 C T MAPK15 Missense_Mutation p.P378S 0.39 tolerated(0.2) benign(0.004) TCGA-P5-A5ET-01 9 139413129 139413131 TCA - NOTCH1 In_Frame_Del p.D338del 0.24 TCGA-P5-A5ET-01 9 93606168 93606168 C T SYK 5'UTR 0.38 TCGA-P5-A5EU-01 10 115963256 115963256 C G TDRD1 Missense_Mutation p.A304G 0.23 tolerated(0.08) probably_damaging(0.971) TCGA-P5-A5EU-01 11 111745581 111745581 A G FDXACB1 3'UTR 0.64 TCGA-P5-A5EU-01 11 49974106 49974106 G T OR4C13 Silent p.V44V 0.44 TCGA-P5-A5EU-01 11 61504678 61504678 C G DAGLA Missense_Mutation p.L466V 0.44 deleterious(0.02) probably_damaging(0.996) TCGA-P5-A5EU-01 12 113531866 113531866 C T DTX1 Nonsense_Mutation p.R397* 0.36 TCGA-P5-A5EU-01 12 47471391 47471391 T A AMIGO2 Missense_Mutation p.R465S 0.81 deleterious(0.01) probably_damaging(0.997) TCGA-P5-A5EU-01 15 40584082 40584082 C T PLCB2 Missense_Mutation p.G857E 0.66 tolerated(0.27) benign(0.03) TCGA-P5-A5EU-01 17 33738559 33738559 A C SLFN12 Nonsense_Mutation p.L512* 0.04 TCGA-P5-A5EU-01 17 39673389 39673389 C T KRT15 Missense_Mutation p.R176Q 0.33 tolerated(0.43) benign(0.094) TCGA-P5-A5EU-01 17 73127345 73127345 C T NT5C Missense_Mutation p.G69D 0.41 tolerated(0.12) probably_damaging(0.988) TCGA-P5-A5EU-01 17 7578280 7578280 G C TP53 Missense_Mutation p.P190R 0.85 deleterious(0.02) probably_damaging(0.998) TCGA-P5-A5EU-01 18 28993042 28993042 T A DSG4 Silent p.P888P 0.41 TCGA-P5-A5EU-01 1 114308980 114308980 G A RSBN1 Silent p.F677F 0.38 TCGA-P5-A5EU-01 1 161275672 161275672 C T MPZ Silent p.K247K 0.42 TCGA-P5-A5EU-01 1 55166019 55166019 G A MROH7 Missense_Mutation p.R997Q 0.07 tolerated(0.09) probably_damaging(0.998) TCGA-P5-A5EU-01 1 57341750 57341750 G A C8A Missense_Mutation p.R111H 0.30 deleterious(0.01) possibly_damaging(0.496) TCGA-P5-A5EU-01 1 68904625 68904625 C A RPE65 Missense_Mutation p.G333V 0.39 deleterious(0) probably_damaging(1) TCGA-P5-A5EU-01 20 51872176 51872176 T C TSHZ2 Missense_Mutation p.S727P 0.48 tolerated(0.05) benign(0.001) TCGA-P5-A5EU-01 22 37882312 37882312 C G MFNG 5'UTR 0.44 TCGA-P5-A5EU-01 22 37966744 37966744 T C LGALS2 Splice_Site p.X30_splice 0.43 TCGA-P5-A5EU-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A5EU-01 2 21225141 21225141 G A APOB Missense_Mutation p.R4385C 0.38 possibly_damaging(0.543) TCGA-P5-A5EU-01 2 241079506 241079506 C T OTOS Splice_Site p.X20_splice 0.73 TCGA-P5-A5EU-01 2 677262 677262 C A TMEM18 Intron 0.52 TCGA-P5-A5EU-01 2 98354121 98354121 A G ZAP70 Missense_Mutation p.Y492C 0.39 deleterious(0) probably_damaging(1) TCGA-P5-A5EU-01 3 187416395 187416395 G A RTP2 Missense_Mutation p.A190V 0.39 tolerated(0.24) benign(0.047) TCGA-P5-A5EU-01 4 8583134 8583134 T G GPR78 Missense_Mutation p.L142R 0.36 deleterious(0.03) probably_damaging(0.981) TCGA-P5-A5EU-01 5 31318075 31318075 C T CDH6 Intron 0.42 TCGA-P5-A5EU-01 5 67591097 67591097 A G PIK3R1 Missense_Mutation p.N564D 0.49 deleterious(0.02) probably_damaging(0.986) TCGA-P5-A5EU-01 5 79854526 79854526 T C ANKRD34B Missense_Mutation p.D438G 0.40 deleterious(0.03) possibly_damaging(0.728) TCGA-P5-A5EU-01 6 144508400 144508400 C T STX11 Silent p.R212R 0.74 TCGA-P5-A5EU-01 7 100552563 100552563 C T MUC3A Silent p.G438G 0.08 TCGA-P5-A5EU-01 8 144392244 144392244 A G TOP1MT Missense_Mutation p.I566T 0.39 deleterious(0.03) benign(0.084) TCGA-P5-A5EU-01 8 144942913 144942913 G A EPPK1 Silent p.S1503S 0.33 TCGA-P5-A5EU-01 8 17829972 17829972 G A PCM1 Missense_Mutation p.R1240H 0.05 tolerated(0.52) benign(0.002) TCGA-P5-A5EV-01 10 6257194 6257194 C G PFKFB3 Silent p.V71V 0.26 TCGA-P5-A5EV-01 10 75148122 75148122 G C ANXA7 Missense_Mutation p.N184K 0.32 deleterious(0.02) benign(0.269) TCGA-P5-A5EV-01 10 79589994 79589994 T A DLG5 Missense_Mutation p.I664F 0.29 deleterious(0) benign(0.084) TCGA-P5-A5EV-01 10 85901358 85901358 G C GHITM Missense_Mutation p.K34N 0.30 tolerated(0.17) possibly_damaging(0.673) TCGA-P5-A5EV-01 11 101323617 101323617 A G TRPC6 3'UTR 0.34 TCGA-P5-A5EV-01 11 103908169 103908169 G C DDI1 Missense_Mutation p.D207H 0.39 deleterious(0) possibly_damaging(0.896) TCGA-P5-A5EV-01 11 1265832 1265832 C G MUC5B Silent p.V2574V 0.26 TCGA-P5-A5EV-01 11 33564683 33564683 C G KIAA1549L Missense_Mutation p.T228S 0.18 tolerated_low_confidence(0.14) benign(0.002) TCGA-P5-A5EV-01 11 55703522 55703522 C T OR5I1 Missense_Mutation p.A119T 0.07 tolerated(0.05) benign(0.137) TCGA-P5-A5EV-01 11 60068530 60068530 G C MS4A4A Silent p.L129L 0.41 TCGA-P5-A5EV-01 11 60620596 60620596 G C PTGDR2 Missense_Mutation p.N200K 0.26 tolerated(1) benign(0.032) TCGA-P5-A5EV-01 11 63721927 63721927 G C NAA40 Silent p.G230G 0.13 TCGA-P5-A5EV-01 11 6411814 6411814 G C SMPD1 5'UTR 0.44 TCGA-P5-A5EV-01 11 67286480 67286480 G A CABP2 3'UTR 0.50 TCGA-P5-A5EV-01 11 837606 837606 C G CD151 Missense_Mutation p.I201M 0.07 deleterious(0) probably_damaging(0.991) TCGA-P5-A5EV-01 11 89774605 89774605 G C TRIM49C Missense_Mutation p.E416Q 0.25 deleterious(0.01) probably_damaging(0.93) TCGA-P5-A5EV-01 12 113824841 113824841 C T PLBD2 Silent p.F462F 0.09 TCGA-P5-A5EV-01 12 113824842 113824842 C T PLBD2 Missense_Mutation p.R463W 0.09 deleterious(0.02) benign(0.12) TCGA-P5-A5EV-01 12 113824843 113824843 G T PLBD2 Missense_Mutation p.R463L 0.09 tolerated(0.14) benign(0.06) TCGA-P5-A5EV-01 12 13128274 13128274 G A HEBP1 Missense_Mutation p.R180W 0.23 deleterious(0) probably_damaging(1) TCGA-P5-A5EV-01 12 28544295 28544295 C G CCDC91 Missense_Mutation p.S238C 0.35 tolerated(0.08) benign(0.021) TCGA-P5-A5EV-01 12 33529816 33529816 A G SYT10 Silent p.S507S 0.36 TCGA-P5-A5EV-01 12 49933199 49933199 G C KCNH3 5'UTR 0.30 TCGA-P5-A5EV-01 12 7077734 7077734 A T PHB2 Missense_Mutation p.L106Q 0.29 deleterious(0) probably_damaging(0.991) TCGA-P5-A5EV-01 12 7526162 7526162 C T CD163L1 Missense_Mutation p.G1162R 0.41 deleterious(0.01) probably_damaging(1) TCGA-P5-A5EV-01 12 81111280 81111280 T C MYF5 Silent p.Y146Y 0.38 TCGA-P5-A5EV-01 12 83289967 83289967 T C TMTC2 Missense_Mutation p.V342A 0.04 tolerated(0.47) benign(0.001) TCGA-P5-A5EV-01 13 108861247 108861247 T C LIG4 Silent p.E790E 0.32 TCGA-P5-A5EV-01 13 25268628 25268628 C T ATP12A Missense_Mutation p.S481L 0.39 tolerated(0.21) possibly_damaging(0.885) TCGA-P5-A5EV-01 13 33591133 33591133 G C KL Silent p.V185V 0.57 TCGA-P5-A5EV-01 13 52864030 52864030 C T RP11-248G5.8 RNA 0.31 TCGA-P5-A5EV-01 13 99098434 99098434 G C FARP1 Missense_Mutation p.C960S 0.07 tolerated(0.23) benign(0.032) TCGA-P5-A5EV-01 14 102891386 102891386 C T TECPR2 Missense_Mutation p.R237W 0.06 deleterious(0) probably_damaging(0.965) TCGA-P5-A5EV-01 15 101718744 101718744 C T CHSY1 Missense_Mutation p.A420T 0.23 deleterious(0) possibly_damaging(0.884) TCGA-P5-A5EV-01 15 102304474 102304474 C A DNM1P47 RNA 0.16 TCGA-P5-A5EV-01 15 25940187 25940187 G C ATP10A Missense_Mutation p.S956C 0.18 tolerated(0.1) possibly_damaging(0.617) TCGA-P5-A5EV-01 15 65425278 65425278 C G PDCD7 Missense_Mutation p.C281S 0.05 tolerated(0.12) probably_damaging(0.909) TCGA-P5-A5EV-01 15 74888092 74888092 C G ARID3B Missense_Mutation p.P554A 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-P5-A5EV-01 15 77407234 77407234 G C PEAK1 Missense_Mutation p.S1502C 0.42 tolerated(0.14) benign(0.035) TCGA-P5-A5EV-01 16 2138115 2138115 C G TSC2 Missense_Mutation p.A1712G 0.39 tolerated(0.07) benign(0.032) TCGA-P5-A5EV-01 16 615104 615104 G C C16orf11 Missense_Mutation p.G505R 0.40 deleterious(0.01) possibly_damaging(0.748) TCGA-P5-A5EV-01 16 72991939 72991939 G C ZFHX3 Silent p.V702V 0.07 TCGA-P5-A5EV-01 16 79633769 79633769 C G MAF Missense_Mutation p.D11H 0.29 tolerated(0.06) unknown(0) TCGA-P5-A5EV-01 17 10363541 10363541 G - MYH4 Frame_Shift_Del p.G417Afs*121 0.17 TCGA-P5-A5EV-01 17 10419993 10419993 A G MYH1 5'UTR 0.11 TCGA-P5-A5EV-01 17 20906305 20906305 A G USP22 3'UTR 0.23 TCGA-P5-A5EV-01 17 44101574 44101574 G C MAPT 3'UTR 0.33 TCGA-P5-A5EV-01 17 46669799 46669799 C G HOXB5 Silent p.G194G 0.45 TCGA-P5-A5EV-01 17 46673597 46673597 C T HOXB6 3'UTR 0.36 TCGA-P5-A5EV-01 17 6331637 6331637 C T AIPL1 Splice_Site p.X155_splice 0.73 TCGA-P5-A5EV-01 17 67111542 67111542 A G ABCA6 Silent p.L527L 0.38 TCGA-P5-A5EV-01 17 72443103 72443103 C T GPRC5C Missense_Mutation p.A466V 0.06 tolerated_low_confidence(0.12) benign(0.006) TCGA-P5-A5EV-01 17 7577144 7577144 A G TP53 Missense_Mutation p.L265P 0.87 deleterious(0) probably_damaging(1) TCGA-P5-A5EV-01 18 47383224 47383224 T G MYO5B Silent p.G1327G 0.41 TCGA-P5-A5EV-01 18 76753213 76753213 G C SALL3 Missense_Mutation p.E408Q 0.30 deleterious(0) probably_damaging(0.974) TCGA-P5-A5EV-01 18 77748273 77748273 C G TXNL4A Missense_Mutation p.K40N 0.26 tolerated(0.1) benign(0.183) TCGA-P5-A5EV-01 19 52034681 52034681 G T SIGLEC6 Missense_Mutation p.P54T 0.52 tolerated(0.53) benign(0.017) TCGA-P5-A5EV-01 19 57133977 57133977 G C ZNF71 Missense_Mutation p.G441A 0.07 tolerated(0.21) benign(0.003) TCGA-P5-A5EV-01 19 8617006 8617006 C G MYO1F Missense_Mutation p.D183H 0.39 tolerated(0.11) probably_damaging(0.928) TCGA-P5-A5EV-01 19 9065338 9065338 G C MUC16 Missense_Mutation p.L7370V 0.09 unknown(0) TCGA-P5-A5EV-01 19 9070563 9070563 G C MUC16 Missense_Mutation p.T5628S 0.06 unknown(0) TCGA-P5-A5EV-01 1 117113546 117113546 C G CD58 Missense_Mutation p.V17L 0.38 deleterious(0.04) benign(0.027) TCGA-P5-A5EV-01 1 120166640 120166640 G C ZNF697 Missense_Mutation p.S109C 0.27 tolerated(0.08) probably_damaging(0.998) TCGA-P5-A5EV-01 1 153643457 153643457 G C ILF2 5'UTR 0.06 TCGA-P5-A5EV-01 1 167384943 167384943 C G POU2F1 Missense_Mutation p.H733D 0.03 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-P5-A5EV-01 1 240370340 240370340 C T FMN2 Missense_Mutation p.S743L 0.30 unknown(0) TCGA-P5-A5EV-01 1 29476672 29476672 C G SRSF4 Missense_Mutation p.S204T 0.08 tolerated(0.07) benign(0.153) TCGA-P5-A5EV-01 1 39835815 39835815 C G MACF1 Missense_Mutation p.S2289C 0.31 possibly_damaging(0.804) TCGA-P5-A5EV-01 1 39838400 39838400 C G MACF1 Intron 0.44 TCGA-P5-A5EV-01 1 39852993 39852993 G C MACF1 Missense_Mutation p.E2765Q 0.33 possibly_damaging(0.865) TCGA-P5-A5EV-01 1 70144065 70144065 A G LRRC7 Missense_Mutation p.M2V 0.70 deleterious_low_confidence(0) benign(0.019) TCGA-P5-A5EV-01 20 3802937 3802937 C T AP5S1 Missense_Mutation p.A58V 0.27 deleterious(0.03) possibly_damaging(0.678) TCGA-P5-A5EV-01 20 47887262 47887262 C G ZNFX1 Missense_Mutation p.D363H 0.06 deleterious(0.04) benign(0.421) TCGA-P5-A5EV-01 21 34713352 34713352 C G IFNAR1 Missense_Mutation p.T83S 0.10 deleterious(0) benign(0.287) TCGA-P5-A5EV-01 21 34927038 34927038 A G SON Missense_Mutation p.H1834R 0.06 unknown(0) TCGA-P5-A5EV-01 22 25023346 25023358 CCCTCCCCACCCT - GGT1 Intron 0.36 TCGA-P5-A5EV-01 22 47569367 47569367 A T TBC1D22A 3'UTR 0.07 TCGA-P5-A5EV-01 22 50217117 50217117 C G BRD1 Missense_Mutation p.K283N 0.07 deleterious(0) probably_damaging(0.988) TCGA-P5-A5EV-01 22 50609371 50609371 C G PANX2 Missense_Mutation p.T71S 0.21 tolerated(0.1) probably_damaging(0.996) TCGA-P5-A5EV-01 2 1652144 1652144 G C PXDN Missense_Mutation p.N1136K 0.21 deleterious(0) probably_damaging(0.959) TCGA-P5-A5EV-01 2 179615597 179615597 C G TTN Intron 0.25 TCGA-P5-A5EV-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A5EV-01 2 234434186 234434186 T C USP40 Missense_Mutation p.D594G 0.30 deleterious(0.04) benign(0.162) TCGA-P5-A5EV-01 2 242815408 242815408 C G CXXC11 Missense_Mutation p.I567M 0.04 tolerated(0.24) possibly_damaging(0.902) TCGA-P5-A5EV-01 2 27530422 27530422 C G UCN Missense_Mutation p.Q114H 0.44 deleterious(0.04) probably_damaging(0.997) TCGA-P5-A5EV-01 2 54128608 54128608 G A PSME4 Missense_Mutation p.A1055V 0.06 deleterious(0.01) probably_damaging(0.935) TCGA-P5-A5EV-01 3 120347254 120347254 G T HGD Missense_Mutation p.N437K 0.21 tolerated(0.24) benign(0.001) TCGA-P5-A5EV-01 3 135913968 135913968 G C MSL2 5'UTR 0.35 TCGA-P5-A5EV-01 3 138739058 138739058 G C PRR23B Missense_Mutation p.A149G 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-P5-A5EV-01 3 46574300 46574300 C A LRRC2 Missense_Mutation p.C197F 0.05 tolerated(0.1) benign(0.015) TCGA-P5-A5EV-01 3 48628163 48628163 C T COL7A1 Missense_Mutation p.V575M 0.21 unknown(0) TCGA-P5-A5EV-01 3 87313619 87313619 C G POU1F1 Missense_Mutation p.L112F 0.34 deleterious(0) possibly_damaging(0.771) TCGA-P5-A5EV-01 4 30723437 30723437 C G PCDH7 Silent p.V131V 0.41 TCGA-P5-A5EV-01 4 38091702 38091702 C T TBC1D1 Silent p.L734L 0.04 TCGA-P5-A5EV-01 5 140209248 140209248 C G PCDHA6 Missense_Mutation p.D524E 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-P5-A5EV-01 5 140237506 140237506 C G PCDHA10 Missense_Mutation p.L625V 0.21 tolerated_low_confidence(0.05) possibly_damaging(0.53) TCGA-P5-A5EV-01 5 140242564 140242564 G C AC005609.1 Missense_Mutation p.P138A 0.29 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-P5-A5EV-01 5 140615277 140615277 C G PCDHB18 RNA 0.61 TCGA-P5-A5EV-01 5 180374587 180374587 G C BTNL8 Missense_Mutation p.G250A 0.38 tolerated(0.57) benign(0.005) TCGA-P5-A5EV-01 5 36122537 36122537 C T LMBRD2 Missense_Mutation p.R322Q 0.35 tolerated(0.14) benign(0.121) TCGA-P5-A5EV-01 6 145149966 145149966 G C UTRN Missense_Mutation p.D3214H 0.13 deleterious(0) probably_damaging(0.993) TCGA-P5-A5EV-01 6 145149992 145149992 G C UTRN Splice_Site p.X3222_splice 0.09 TCGA-P5-A5EV-01 6 17629745 17629745 C T NUP153 Silent p.S895S 0.44 TCGA-P5-A5EV-01 6 31745315 31745315 T C VARS 3'UTR 0.08 TCGA-P5-A5EV-01 6 46830772 46830772 C G GPR116 Missense_Mutation p.Q684H 0.36 tolerated(0.12) possibly_damaging(0.827) TCGA-P5-A5EV-01 7 100281867 100281867 C G GIGYF1 Missense_Mutation p.V575L 0.55 tolerated(1) unknown(0) TCGA-P5-A5EV-01 7 100551833 100551833 C A MUC3A Missense_Mutation p.T195N 0.03 deleterious(0.04) benign(0.246) TCGA-P5-A5EV-01 7 107423255 107423255 G T SLC26A3 Missense_Mutation p.A433E 0.06 tolerated(1) benign(0.01) TCGA-P5-A5EV-01 7 133692502 133692502 C G EXOC4 Missense_Mutation p.I867M 0.14 deleterious(0) probably_damaging(0.972) TCGA-P5-A5EV-01 7 45699747 45699747 G A ADCY1 Missense_Mutation p.E472K 0.25 tolerated(0.31) benign(0.059) TCGA-P5-A5EV-01 7 87792427 87792427 C G ADAM22 Missense_Mutation p.P670A 0.26 deleterious(0) benign(0.241) TCGA-P5-A5EV-01 7 99359851 99359851 G C CYP3A4 Missense_Mutation p.L356V 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-P5-A5EV-01 8 100829810 100829810 C G VPS13B Missense_Mutation p.Q2739E 0.30 tolerated(0.28) benign(0) TCGA-P5-A5EV-01 8 144895232 144895232 G C SCRIB Missense_Mutation p.L204V 0.25 probably_damaging(0.999) TCGA-P5-A5EV-01 8 1950795 1950795 G C KBTBD11 Missense_Mutation p.E479D 0.57 tolerated(0.07) possibly_damaging(0.833) TCGA-P5-A5EV-01 8 95143113 95143113 A G CDH17 Missense_Mutation p.S759P 0.04 tolerated(0.12) benign(0.418) TCGA-P5-A5EV-01 9 34372002 34372002 G A KIAA1161 Nonsense_Mutation p.R280* 0.12 TCGA-P5-A5EV-01 9 34381050 34381050 G A C9orf24 Silent p.C184C 0.11 TCGA-P5-A5EV-01 X 40506785 40506785 G C CXorf38 5'UTR 0.79 TCGA-P5-A5EV-01 X 76937038 76937038 G C ATRX Nonsense_Mutation p.S1237* 0.73 TCGA-P5-A5EW-01 11 76371010 76371010 G A LRRC32 Silent p.L543L 0.16 TCGA-P5-A5EW-01 15 59499792 59499792 G A LDHAL6B Missense_Mutation p.R218H 0.04 deleterious(0.04) possibly_damaging(0.64) TCGA-P5-A5EW-01 15 77087752 77087752 C T SCAPER Missense_Mutation p.R214H 0.06 deleterious(0.01) benign(0.012) TCGA-P5-A5EW-01 17 72691192 72691192 T A CD300LF 3'UTR 0.22 TCGA-P5-A5EW-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.93 tolerated(0.13) possibly_damaging(0.631) TCGA-P5-A5EW-01 19 10668901 10668901 G A KRI1 Silent p.D409D 0.23 TCGA-P5-A5EW-01 19 15133702 15133702 G T CCDC105 Missense_Mutation p.C424F 0.38 deleterious(0) benign(0.002) TCGA-P5-A5EW-01 1 205210633 205210633 A G TMCC2 Missense_Mutation p.K70E 0.51 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-P5-A5EW-01 1 247614765 247614765 C T OR2B11 Missense_Mutation p.G174R 0.07 deleterious(0.01) probably_damaging(1) TCGA-P5-A5EW-01 2 107029596 107029596 T C RGPD3 Missense_Mutation p.N1737S 0.83 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-P5-A5EW-01 2 169985166 169985166 G - LRP2 3'UTR 0.31 TCGA-P5-A5EW-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A5EW-01 3 121613307 121613307 A - SLC15A2 5'UTR 0.34 TCGA-P5-A5EW-01 3 126261320 126261320 C T CHST13 Missense_Mutation p.R309W 0.24 deleterious(0) possibly_damaging(0.877) TCGA-P5-A5EW-01 3 45127212 45127212 T C CDCP1 Missense_Mutation p.H810R 0.08 deleterious(0) possibly_damaging(0.736) TCGA-P5-A5EW-01 5 140711256 140711256 C A PCDHGA1 Silent p.I335I 0.37 TCGA-P5-A5EW-01 5 170236583 170236583 G A GABRP Missense_Mutation p.V282M 0.49 deleterious(0) probably_damaging(0.999) TCGA-P5-A5EW-01 6 46518143 46518143 G A CYP39A1 Missense_Mutation p.P457L 0.31 deleterious(0) probably_damaging(1) TCGA-P5-A5EW-01 8 145580132 145580132 G A FBXL6 Silent p.P351P 0.50 TCGA-P5-A5EW-01 9 43625420 43625420 A G SPATA31A6 Silent p.C1089C 0.43 TCGA-P5-A5EW-01 X 118123490 118123490 C A LONRF3 Missense_Mutation p.D393E 0.07 tolerated(0.5) benign(0.003) TCGA-P5-A5EW-01 X 151870011 151870011 G - MAGEA6 Frame_Shift_Del p.E235Kfs*50 0.31 TCGA-P5-A5EW-01 X 67413796 67413796 T C OPHN1 Splice_Site p.X380_splice 0.30 TCGA-P5-A5EW-01 X 74291461 74291461 C A ABCB7 Nonsense_Mutation p.E365* 0.37 TCGA-P5-A5EW-01 X 76939758 76939762 TTTCT - ATRX Frame_Shift_Del p.K329Ifs*3 0.43 TCGA-P5-A5EX-01 10 90034678 90034678 A G RNLS 3'UTR 0.34 TCGA-P5-A5EX-01 11 3697451 3697451 T C NUP98 Missense_Mutation p.M1781V 0.08 deleterious(0.05) benign(0.012) TCGA-P5-A5EX-01 11 74914337 74914337 C T SLCO2B1 Intron 0.49 TCGA-P5-A5EX-01 11 85375242 85375244 CTT - CREBZF In_Frame_Del p.K226del 0.08 TCGA-P5-A5EX-01 12 57038876 57038877 - C ATP5B Intron 0.20 TCGA-P5-A5EX-01 13 77581815 77581815 C T FBXL3 Missense_Mutation p.R251Q 0.33 tolerated(0.63) benign(0.117) TCGA-P5-A5EX-01 15 79749239 79749239 C T KIAA1024 Silent p.V250V 0.25 TCGA-P5-A5EX-01 17 11881256 11881257 AG - ZNF18 3'UTR 0.12 TCGA-P5-A5EX-01 17 17046885 17046886 - C MPRIP Frame_Shift_Ins p.A354Sfs*43 0.26 TCGA-P5-A5EX-01 17 56388978 56388978 T C BZRAP1 Missense_Mutation p.N1012S 0.30 deleterious(0) probably_damaging(0.983) TCGA-P5-A5EX-01 18 32917323 32917323 C A ZNF24 Missense_Mutation p.R327I 0.07 deleterious(0) possibly_damaging(0.481) TCGA-P5-A5EX-01 19 40901791 40901791 G A PRX Missense_Mutation p.A823V 0.08 tolerated(0.15) possibly_damaging(0.695) TCGA-P5-A5EX-01 19 58197953 58197953 A G ZNF551 Missense_Mutation p.S104G 0.55 deleterious(0.04) possibly_damaging(0.483) TCGA-P5-A5EX-01 20 35445831 35445831 G T SOGA1 Silent p.A371A 0.54 TCGA-P5-A5EX-01 2 113089666 113089666 A G ZC3H6 Silent p.S1057S 0.40 TCGA-P5-A5EX-01 2 179410161 179410161 A G TTN Silent p.S31892S 0.36 TCGA-P5-A5EX-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A5EX-01 3 170141061 170141061 G A CLDN11 Missense_Mutation p.G113S 0.31 tolerated(0.67) possibly_damaging(0.733) TCGA-P5-A5EX-01 4 13603085 13603085 G A BOD1L1 Silent p.S1813S 0.11 TCGA-P5-A5EX-01 6 142397180 142397180 T A NMBR Missense_Mutation p.T260S 0.31 tolerated(1) benign(0.382) TCGA-P5-A5EX-01 7 114294061 114294061 A T FOXP2 Missense_Mutation p.K446N 0.28 deleterious(0.04) unknown(0) TCGA-P5-A5EX-01 7 142638440 142638440 G A KEL Nonsense_Mutation p.R700* 0.30 TCGA-P5-A5EX-01 7 43687182 43687182 C T COA1 Missense_Mutation p.G23S 0.33 tolerated(0.73) benign(0.003) TCGA-P5-A5EX-01 7 5256804 5256804 G A WIPI2 Missense_Mutation p.D188N 0.32 deleterious(0.01) possibly_damaging(0.495) TCGA-P5-A5EX-01 7 87005181 87005181 T C CROT Missense_Mutation p.L291S 0.22 tolerated(0.72) benign(0.027) TCGA-P5-A5EX-01 8 95541443 95541445 TTG - KIAA1429 In_Frame_Del p.Q245del 0.27 TCGA-P5-A5EX-01 9 96714489 96714489 G A BARX1 Missense_Mutation p.A241V 0.35 tolerated(0.32) benign(0.002) TCGA-P5-A5EX-01 X 123519691 123519691 G C TENM1 Missense_Mutation p.T1971R 0.35 deleterious(0) possibly_damaging(0.58) TCGA-P5-A5EX-01 X 30269583 30269583 C T MAGEB1 Missense_Mutation p.R325C 0.32 tolerated(0.17) unknown(0) TCGA-P5-A5EX-01 X 69615591 69615591 T G KIF4A Missense_Mutation p.L768R 0.42 deleterious(0) probably_damaging(0.999) TCGA-P5-A5EX-01 X 79942476 79942476 A G BRWD3 Silent p.S1297S 0.24 TCGA-P5-A5EY-01 14 23851755 23851755 G A MYH6 Missense_Mutation p.T1893I 0.03 tolerated(0.18) benign(0.005) TCGA-P5-A5EY-01 19 52327322 52327322 C A FPR3 Silent p.I107I 0.07 TCGA-P5-A5EZ-01 10 135024204 135024204 A G KNDC1 Missense_Mutation p.D1295G 0.05 deleterious(0) possibly_damaging(0.752) TCGA-P5-A5EZ-01 11 10328221 10328221 C T ADM 3'UTR 0.09 TCGA-P5-A5EZ-01 11 113211422 113211422 T A TTC12 Missense_Mutation p.F288Y 0.09 deleterious(0.01) probably_damaging(0.96) TCGA-P5-A5EZ-01 11 43515339 43515339 C T TTC17 Missense_Mutation p.A1104V 0.26 deleterious(0) possibly_damaging(0.787) TCGA-P5-A5EZ-01 11 56468248 56468248 C G OR9G1 Missense_Mutation p.L129V 0.06 deleterious(0) probably_damaging(0.993) TCGA-P5-A5EZ-01 12 6635636 6635636 C G NCAPD2 Silent p.L863L 0.07 TCGA-P5-A5EZ-01 13 50134077 50134077 T C RCBTB1 Missense_Mutation p.M141V 0.29 tolerated(0.33) benign(0.001) TCGA-P5-A5EZ-01 14 20854643 20854643 G A TEP1 Missense_Mutation p.R942C 0.13 deleterious(0) probably_damaging(0.985) TCGA-P5-A5EZ-01 14 23395475 23395475 T C PRMT5 Missense_Mutation p.N215S 0.09 tolerated(0.57) benign(0.012) TCGA-P5-A5EZ-01 14 95085593 95085593 G C SERPINA3 Missense_Mutation p.K235N 0.50 tolerated(0.28) benign(0.034) TCGA-P5-A5EZ-01 14 99642194 99642194 G A BCL11B Missense_Mutation p.P327S 0.29 tolerated(0.14) unknown(0) TCGA-P5-A5EZ-01 15 20651212 20651212 G T HERC2P3 RNA 0.10 TCGA-P5-A5EZ-01 17 38711204 38711204 G A CCR7 Silent p.D309D 0.10 TCGA-P5-A5EZ-01 17 39579137 39579137 C T KRT37 Missense_Mutation p.G209R 0.18 deleterious(0.02) possibly_damaging(0.867) TCGA-P5-A5EZ-01 17 7578213 7578213 A - TP53 Frame_Shift_Del p.R213Dfs*34 0.41 TCGA-P5-A5EZ-01 19 3730650 3730650 G T TJP3 Missense_Mutation p.D196Y 0.06 deleterious(0) probably_damaging(0.996) TCGA-P5-A5EZ-01 19 9075050 9075050 T A MUC16 Silent p.S4132S 0.08 TCGA-P5-A5EZ-01 1 12954492 12954492 A G PRAMEF10 Missense_Mutation p.L264P 0.37 deleterious(0.02) benign(0.222) TCGA-P5-A5EZ-01 1 160209956 160209956 C A DCAF8 Missense_Mutation p.G85V 0.25 deleterious(0.02) benign(0.312) TCGA-P5-A5EZ-01 1 205042816 205042816 C T CNTN2 Missense_Mutation p.R1016C 0.10 tolerated(0.13) benign(0) TCGA-P5-A5EZ-01 1 20810112 20810112 C T CAMK2N1 3'UTR 0.06 TCGA-P5-A5EZ-01 20 20056252 20056252 A C C20orf26 Missense_Mutation p.K187Q 0.06 tolerated(0.37) benign(0.073) TCGA-P5-A5EZ-01 20 30659555 30659555 C T HCK Silent p.Y51Y 0.10 TCGA-P5-A5EZ-01 22 19365445 19365445 C G HIRA Missense_Mutation p.E520D 0.35 tolerated(0.47) benign(0.015) TCGA-P5-A5EZ-01 22 31663038 31663038 G A LIMK2 Silent p.Q349Q 0.19 TCGA-P5-A5EZ-01 2 114480706 114480706 A G SLC35F5 Missense_Mutation p.I439T 0.29 deleterious(0) benign(0.194) TCGA-P5-A5EZ-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-P5-A5EZ-01 2 21241933 21241933 C T APOB Missense_Mutation p.A1018T 0.34 probably_damaging(0.999) TCGA-P5-A5EZ-01 2 219000218 219000218 G A CXCR2 Missense_Mutation p.G232R 0.29 deleterious(0) benign(0.304) TCGA-P5-A5EZ-01 2 219500985 219500985 G C PLCD4 Silent p.G684G 0.31 TCGA-P5-A5EZ-01 2 227660233 227660233 C T IRS1 Silent p.R1074R 0.32 TCGA-P5-A5EZ-01 2 26688866 26688866 G A OTOF Missense_Mutation p.R1527C 0.10 deleterious(0) possibly_damaging(0.69) TCGA-P5-A5EZ-01 2 65248050 65248050 C T SLC1A4 Missense_Mutation p.R457W 0.26 deleterious(0) probably_damaging(1) TCGA-P5-A5EZ-01 3 100365452 100365452 G T GPR128 Missense_Mutation p.V384F 0.06 deleterious(0) probably_damaging(0.988) TCGA-P5-A5EZ-01 3 11300958 11300958 G A HRH1 Missense_Mutation p.V79I 0.06 tolerated(0.16) benign(0.021) TCGA-P5-A5EZ-01 3 185316806 185316806 A G SENP2 Missense_Mutation p.K118E 0.28 tolerated(0.16) possibly_damaging(0.556) TCGA-P5-A5EZ-01 3 189586404 189586404 G T TP63 Missense_Mutation p.R343L 0.09 deleterious(0) benign(0.045) TCGA-P5-A5EZ-01 4 13602746 13602746 T G BOD1L1 Silent p.A1926A 0.12 TCGA-P5-A5EZ-01 4 38690343 38690343 G A KLF3 Silent p.T65T 0.10 TCGA-P5-A5EZ-01 4 5016853 5016853 G T CYTL1 3'UTR 0.09 TCGA-P5-A5EZ-01 4 52951155 52951155 G C SPATA18 Missense_Mutation p.G518A 0.08 tolerated(0.26) probably_damaging(0.992) TCGA-P5-A5EZ-01 5 140762775 140762775 G A PCDHGA7 Silent p.L103L 0.10 TCGA-P5-A5EZ-01 5 32072325 32072325 C G PDZD2 Missense_Mutation p.P876R 0.09 deleterious(0.01) possibly_damaging(0.839) TCGA-P5-A5EZ-01 6 117706989 117706989 C G ROS1 Missense_Mutation p.D721H 0.07 deleterious(0.02) probably_damaging(0.945) TCGA-P5-A5EZ-01 6 158066844 158066844 C T ZDHHC14 Silent p.I276I 0.20 TCGA-P5-A5EZ-01 6 26431579 26431579 C A BTN2A3P RNA 0.05 TCGA-P5-A5EZ-01 6 42146546 42146546 C T GUCA1A Missense_Mutation p.R120C 0.08 deleterious(0) probably_damaging(0.964) TCGA-P5-A5EZ-01 6 74325149 74325149 G A SLC17A5 Missense_Mutation p.P334S 0.12 deleterious(0) probably_damaging(1) TCGA-P5-A5EZ-01 7 21640731 21640731 T C DNAH11 Missense_Mutation p.L1120S 0.25 probably_damaging(0.976) TCGA-P5-A5EZ-01 7 70227916 70227916 T C AUTS2 Missense_Mutation p.V268A 0.06 tolerated(0.18) probably_damaging(0.987) TCGA-P5-A5EZ-01 8 95680362 95680362 G A ESRP1 Missense_Mutation p.A373T 0.07 deleterious(0) probably_damaging(1) TCGA-P5-A5EZ-01 9 23701564 23701564 G A ELAVL2 Nonsense_Mutation p.R176* 0.07 TCGA-P5-A5F0-01 10 5260731 5260731 G C AKR1C4 3'UTR 0.19 TCGA-P5-A5F0-01 10 7679258 7679258 C T ITIH5 Silent p.A195A 0.33 TCGA-P5-A5F0-01 11 102649942 102649942 A G MMP10 Splice_Site p.X166_splice 0.04 TCGA-P5-A5F0-01 11 111229622 111229622 G A POU2AF1 Missense_Mutation p.P13L 0.37 deleterious(0.02) possibly_damaging(0.635) TCGA-P5-A5F0-01 11 12883803 12883803 A G TEAD1 Missense_Mutation p.N70S 0.10 deleterious(0.02) probably_damaging(0.991) TCGA-P5-A5F0-01 11 55339694 55339694 C T OR4C16 Missense_Mutation p.R31C 0.35 deleterious(0.05) benign(0.008) TCGA-P5-A5F0-01 12 7526163 7526163 G A CD163L1 Silent p.N1161N 0.03 TCGA-P5-A5F0-01 12 8976368 8976368 G A A2ML1 Missense_Mutation p.G100E 0.38 tolerated(0.39) possibly_damaging(0.646) TCGA-P5-A5F0-01 13 24858319 24858319 C G SPATA13 Missense_Mutation p.N737K 0.61 deleterious(0.04) benign(0.052) TCGA-P5-A5F0-01 15 50769066 50769066 G C USP8 Silent p.L290L 0.30 TCGA-P5-A5F0-01 15 56969820 56969820 T C ZNF280D Silent p.Q405Q 0.21 TCGA-P5-A5F0-01 16 23695207 23695207 C G PLK1 Missense_Mutation p.A278G 0.10 deleterious(0) probably_damaging(0.987) TCGA-P5-A5F0-01 17 59668211 59668211 C T NACA2 Missense_Mutation p.V111I 0.29 deleterious(0.04) possibly_damaging(0.574) TCGA-P5-A5F0-01 19 35504508 35504508 C T GRAMD1A Silent p.D261D 0.51 TCGA-P5-A5F0-01 19 42791828 42791828 G A CIC Nonsense_Mutation p.W238* 0.41 TCGA-P5-A5F0-01 19 42795615 42795615 A - CIC Frame_Shift_Del p.A900Pfs*24 0.15 TCGA-P5-A5F0-01 19 42796879 42796879 C T CIC Nonsense_Mutation p.Q1113* 0.07 TCGA-P5-A5F0-01 19 52955082 52955082 C T ZNF578 5'Flank 0.17 TCGA-P5-A5F0-01 1 152191766 152191766 C T HRNR Missense_Mutation p.R780Q 0.31 unknown(0) TCGA-P5-A5F0-01 1 177936856 177936856 G A SEC16B Silent p.D87D 0.09 TCGA-P5-A5F0-01 1 247588165 247588165 G A NLRP3 Missense_Mutation p.A474T 0.27 deleterious(0) probably_damaging(0.999) TCGA-P5-A5F0-01 22 17072572 17072577 ATTCCT G CCT8L2 Frame_Shift_Del p.G289* 0.09 TCGA-P5-A5F0-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A5F0-01 2 222301821 222301821 G T EPHA4 Missense_Mutation p.T699K 0.37 deleterious(0) probably_damaging(0.981) TCGA-P5-A5F0-01 2 26426943 26426943 T A HADHA Missense_Mutation p.Q403L 0.33 deleterious(0.01) probably_damaging(0.981) TCGA-P5-A5F0-01 2 84784902 84784902 T G DNAH6 Nonsense_Mutation p.L549* 0.29 TCGA-P5-A5F0-01 2 85843529 85843529 C T USP39 Missense_Mutation p.R71W 0.09 deleterious(0) benign(0.42) TCGA-P5-A5F0-01 3 134277174 134277174 A T CEP63 Missense_Mutation p.K553M 0.20 deleterious(0) probably_damaging(0.919) TCGA-P5-A5F0-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.45 tolerated(0.05) possibly_damaging(0.704) TCGA-P5-A5F0-01 3 98251295 98251295 G A GPR15 Missense_Mutation p.V140I 0.11 tolerated(0.49) benign(0.01) TCGA-P5-A5F0-01 5 112770050 112770050 G A TSSK1B Missense_Mutation p.R163W 0.06 tolerated(0.06) probably_damaging(0.935) TCGA-P5-A5F0-01 5 140306487 140306487 T C PCDHAC1 Missense_Mutation p.C4R 0.17 tolerated(0.08) benign(0) TCGA-P5-A5F0-01 6 144835787 144835787 G T UTRN Missense_Mutation p.R1692L 0.09 deleterious(0.01) possibly_damaging(0.752) TCGA-P5-A5F0-01 6 26271605 26271605 C T HIST1H3G Missense_Mutation p.R3H 0.06 tolerated_low_confidence(0.06) benign(0) TCGA-P5-A5F0-01 7 56084931 56084931 A C PSPH Missense_Mutation p.F139L 0.54 tolerated(0.66) benign(0.046) TCGA-P5-A5F0-01 7 79842082 79842082 G C GNAI1 Missense_Mutation p.K257N 0.05 deleterious(0.04) possibly_damaging(0.859) TCGA-P5-A5F0-01 9 131479035 131479035 C G PKN3 Missense_Mutation p.C606W 0.10 deleterious(0) probably_damaging(0.988) TCGA-P5-A5F0-01 9 139412283 139412285 GTT - NOTCH1 In_Frame_Del p.N454del 0.13 TCGA-P5-A5F0-01 X 24229107 24229109 AAG - ZFX In_Frame_Del p.K679del 0.28 TCGA-P5-A5F1-01 10 105836081 105836081 G A COL17A1 Silent p.H103H 0.04 TCGA-P5-A5F1-01 10 129905566 129905566 C T MKI67 Missense_Mutation p.R1513K 0.07 deleterious(0.04) possibly_damaging(0.569) TCGA-P5-A5F1-01 10 88696709 88696709 C T MMRN2 Missense_Mutation p.G881R 0.18 deleterious(0) probably_damaging(0.98) TCGA-P5-A5F1-01 11 5624532 5624532 G A TRIM6-TRIM34 Missense_Mutation p.R25K 0.21 tolerated_low_confidence(0.57) benign(0) TCGA-P5-A5F1-01 12 10279991 10279991 G A CLEC7A Intron 0.12 TCGA-P5-A5F1-01 12 8376067 8376067 G A FAM90A1 Missense_Mutation p.T137M 0.31 tolerated(0.25) possibly_damaging(0.891) TCGA-P5-A5F1-01 14 24884572 24884572 G A NYNRIN Missense_Mutation p.G1206D 0.39 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-P5-A5F1-01 15 25468438 25468438 C T SNORD115-29 RNA 0.03 TCGA-P5-A5F1-01 16 24800571 24800571 C G TNRC6A Nonsense_Mutation p.S203* 0.07 TCGA-P5-A5F1-01 16 4308138 4308138 G A TFAP4 Missense_Mutation p.T312I 0.06 deleterious_low_confidence(0) unknown(0) TCGA-P5-A5F1-01 17 35545360 35545360 C T ACACA Missense_Mutation p.V1545I 0.22 tolerated(0.09) probably_damaging(0.994) TCGA-P5-A5F1-01 17 38645118 38645118 A G TNS4 Silent p.S181S 0.04 TCGA-P5-A5F1-01 17 7578492 7578492 C T TP53 Nonsense_Mutation p.W146* 0.32 TCGA-P5-A5F1-01 17 77043851 77043851 A C C1QTNF1 Missense_Mutation p.D176A 0.35 deleterious(0.01) benign(0.016) TCGA-P5-A5F1-01 19 37005409 37005409 T C ZNF260 Silent p.G244G 0.33 TCGA-P5-A5F1-01 19 38899550 38899550 G T FAM98C 3'UTR 0.11 TCGA-P5-A5F1-01 19 57325168 57325168 G A PEG3 Missense_Mutation p.R1548C 0.20 tolerated(0.06) benign(0.004) TCGA-P5-A5F1-01 1 207679428 207679428 C T CR1 Missense_Mutation p.R101C 0.07 deleterious(0.05) probably_damaging(0.965) TCGA-P5-A5F1-01 21 11038930 11038930 G T BAGE2 RNA 0.04 TCGA-P5-A5F1-01 21 11047557 11047557 G A BAGE2 RNA 0.07 TCGA-P5-A5F1-01 21 33954533 33954533 C T AP000275.65 Missense_Mutation p.A287T 0.35 benign(0.001) TCGA-P5-A5F1-01 2 179412203 179412203 T G TTN Missense_Mutation p.S31384R 0.28 TCGA-P5-A5F1-01 2 204304519 204304519 G A RAPH1 Missense_Mutation p.R1132C 0.41 unknown(0) TCGA-P5-A5F1-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A5F1-01 2 74128424 74128424 T C ACTG2 5'UTR 0.06 TCGA-P5-A5F1-01 3 137822838 137822838 C A DZIP1L 5'UTR 0.05 TCGA-P5-A5F1-01 3 65346835 65346835 T C MAGI1 Intron 0.24 TCGA-P5-A5F1-01 5 94749873 94749873 A G FAM81B Silent p.K172K 0.04 TCGA-P5-A5F1-01 8 17722036 17722036 A G FGL1 3'UTR 0.24 TCGA-P5-A5F1-01 X 76938788 76938788 G A ATRX Nonsense_Mutation p.R654* 0.68 TCGA-P5-A5F2-01 10 129869084 129869084 G A PTPRE Missense_Mutation p.V436I 0.22 tolerated(0.65) possibly_damaging(0.578) TCGA-P5-A5F2-01 11 56020474 56020474 G A OR5T3 Missense_Mutation p.A267T 0.17 tolerated(0.09) benign(0.091) TCGA-P5-A5F2-01 11 6704527 6704527 T C MRPL17 Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-P5-A5F2-01 12 11992227 11992227 C G ETV6 Missense_Mutation p.S106C 0.06 tolerated(0.22) benign(0.03) TCGA-P5-A5F2-01 12 70726595 70726595 C G CNOT2 Missense_Mutation p.N206K 0.32 tolerated(0.11) benign(0.001) TCGA-P5-A5F2-01 13 32527475 32527475 G A EEF1DP3 RNA 0.09 TCGA-P5-A5F2-01 13 58207144 58207144 G C PCDH17 Missense_Mutation p.S155T 0.12 deleterious(0.03) possibly_damaging(0.489) TCGA-P5-A5F2-01 15 48559802 48559803 - A SLC12A1 Frame_Shift_Ins p.Q736Tfs*47 0.11 TCGA-P5-A5F2-01 16 56921899 56921899 G A SLC12A3 Silent p.Q747Q 0.10 TCGA-P5-A5F2-01 17 30503008 30503008 G A RHOT1 Missense_Mutation p.V84I 0.12 tolerated(0.1) possibly_damaging(0.897) TCGA-P5-A5F2-01 17 48264045 48264045 C T COL1A1 Missense_Mutation p.R1257H 0.44 unknown(0) TCGA-P5-A5F2-01 17 56355276 56355276 G A MPO Silent p.N372N 0.42 TCGA-P5-A5F2-01 17 62036690 62036690 G A SCN4A Missense_Mutation p.L652F 0.19 deleterious(0) possibly_damaging(0.814) TCGA-P5-A5F2-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.69 deleterious(0) probably_damaging(0.998) TCGA-P5-A5F2-01 19 14157389 14157389 G A IL27RA Nonsense_Mutation p.W367* 0.33 TCGA-P5-A5F2-01 1 155920805 155920805 G A ARHGEF2 Missense_Mutation p.R840W 0.52 deleterious(0) benign(0) TCGA-P5-A5F2-01 1 17418910 17418910 G A PADI2 Silent p.Y216Y 0.42 TCGA-P5-A5F2-01 1 215793979 215793979 A T KCTD3 3'UTR 0.11 TCGA-P5-A5F2-01 1 52499413 52499413 G A KTI12 Silent p.C7C 0.10 TCGA-P5-A5F2-01 21 34717551 34717551 G C IFNAR1 Splice_Site p.X225_splice 0.14 TCGA-P5-A5F2-01 2 102968090 102968090 C T IL1RL1 Silent p.Y460Y 0.36 TCGA-P5-A5F2-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A5F2-01 2 220432495 220432495 G A OBSL1 Silent p.G493G 0.04 TCGA-P5-A5F2-01 2 240111713 240111713 C T HDAC4 Missense_Mutation p.R52H 0.10 deleterious(0) probably_damaging(0.997) TCGA-P5-A5F2-01 3 109023364 109023364 G A DPPA2 Missense_Mutation p.P271L 0.46 tolerated(0.07) probably_damaging(0.999) TCGA-P5-A5F2-01 3 167508340 167508340 A G SERPINI1 Missense_Mutation p.N144S 0.17 tolerated(0.73) benign(0.007) TCGA-P5-A5F2-01 4 173873279 173873279 A G GALNTL6 Missense_Mutation p.D414G 0.31 deleterious(0) probably_damaging(0.96) TCGA-P5-A5F2-01 4 23830190 23830190 C T PPARGC1A Missense_Mutation p.C197Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-P5-A5F2-01 5 140719479 140719479 T A PCDHGA2 Missense_Mutation p.F314Y 0.06 tolerated_low_confidence(0.06) benign(0.215) TCGA-P5-A5F2-01 6 35547956 35547956 C A FKBP5 Missense_Mutation p.V295L 0.14 tolerated(0.1) benign(0.029) TCGA-P5-A5F2-01 6 407544 407544 C T IRF4 Silent p.I434I 0.26 TCGA-P5-A5F2-01 7 82545175 82545175 G A PCLO Missense_Mutation p.P4043S 0.09 unknown(0) TCGA-P5-A5F2-01 9 130293979 130293979 C T FAM129B Missense_Mutation p.R45H 0.17 tolerated(0.05) probably_damaging(0.997) TCGA-P5-A5F2-01 9 139396809 139396809 G A NOTCH1 Missense_Mutation p.L1767F 0.14 deleterious(0) benign(0.32) TCGA-P5-A5F2-01 X 108718947 108718947 C A GUCY2F Missense_Mutation p.E73D 0.07 tolerated(0.95) benign(0.004) TCGA-P5-A5F2-01 X 46887419 46887419 G A JADE3 Missense_Mutation p.V201M 0.30 deleterious(0) probably_damaging(0.999) TCGA-P5-A5F2-01 X 76920192 76920193 - TCATCAT ATRX Nonsense_Mutation p.P1296* 0.29 TCGA-P5-A5F4-01 11 397651 397651 G A PKP3 Missense_Mutation p.A353T 0.12 deleterious(0) probably_damaging(0.968) TCGA-P5-A5F4-01 11 45117366 45117366 A G PRDM11 Missense_Mutation p.M4V 0.33 tolerated_low_confidence(0.09) unknown(0) TCGA-P5-A5F4-01 11 55587452 55587452 T G OR5D18 Nonsense_Mutation p.L116* 0.38 TCGA-P5-A5F4-01 11 61544280 61544280 C T MYRF Silent p.A507A 0.27 TCGA-P5-A5F4-01 11 72292936 72292936 C A PDE2A Missense_Mutation p.C636F 0.11 tolerated(0.69) benign(0.03) TCGA-P5-A5F4-01 11 986944 986944 C T AP2A2 Silent p.N374N 0.20 TCGA-P5-A5F4-01 12 21028269 21028269 T C SLCO1B3 Silent p.F276F 0.32 TCGA-P5-A5F4-01 12 53010008 53010008 C G KRT73 Missense_Mutation p.V202L 0.18 tolerated(0.74) benign(0.084) TCGA-P5-A5F4-01 12 54795993 54795993 C G ITGA5 Missense_Mutation p.E702Q 0.24 deleterious(0) probably_damaging(0.971) TCGA-P5-A5F4-01 12 5708718 5708718 G A ANO2 Missense_Mutation p.P722L 0.16 tolerated(0.59) possibly_damaging(0.888) TCGA-P5-A5F4-01 12 70949900 70949900 G A PTPRB Silent p.C1581C 0.22 TCGA-P5-A5F4-01 12 7362771 7362771 C T PEX5 Silent p.D639D 0.12 TCGA-P5-A5F4-01 14 102461153 102461154 AG - DYNC1H1 Frame_Shift_Del p.E1101Vfs*14 0.12 TCGA-P5-A5F4-01 14 19377724 19377724 C T OR11H12 Missense_Mutation p.S44L 0.07 tolerated(0.86) benign(0.001) TCGA-P5-A5F4-01 14 58831983 58831983 G C ARID4A Missense_Mutation p.S1059T 0.34 tolerated(0.07) benign(0.062) TCGA-P5-A5F4-01 16 2983273 2983273 G A FLYWCH1 Silent p.R312R 0.21 TCGA-P5-A5F4-01 17 39673186 39673186 G A KRT15 Silent p.G204G 0.16 TCGA-P5-A5F4-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.90 deleterious(0) probably_damaging(0.993) TCGA-P5-A5F4-01 17 76134132 76134132 C T TMC8 Missense_Mutation p.R466W 0.12 deleterious(0.04) probably_damaging(0.996) TCGA-P5-A5F4-01 19 21216300 21216300 T C ZNF430 Silent p.S45S 0.16 TCGA-P5-A5F4-01 19 651708 651708 G C RNF126 Missense_Mutation p.H116D 0.37 tolerated(0.11) benign(0.075) TCGA-P5-A5F4-01 1 154062057 154062057 C T NUP210L Missense_Mutation p.R734Q 0.06 tolerated(0.21) benign(0.023) TCGA-P5-A5F4-01 1 161087941 161087941 C A NIT1 5'UTR 0.23 TCGA-P5-A5F4-01 20 42264576 42264576 C G IFT52 Missense_Mutation p.Q312E 0.12 tolerated(0.56) benign(0.001) TCGA-P5-A5F4-01 20 9389339 9389339 A G PLCB4 Missense_Mutation p.K605E 0.32 deleterious(0) possibly_damaging(0.905) TCGA-P5-A5F4-01 21 46021254 46021254 G T KRTAP10-7 Missense_Mutation p.V245L 0.17 tolerated(0.14) unknown(0) TCGA-P5-A5F4-01 22 33670458 33670458 G A LARGE Silent p.Y742Y 0.14 TCGA-P5-A5F4-01 22 45132730 45132730 C T PRR5 Missense_Mutation p.T280M 0.21 tolerated(0.1) benign(0.015) TCGA-P5-A5F4-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-P5-A5F4-01 2 74750021 74750021 A G DQX1 Missense_Mutation p.I422T 0.40 deleterious(0) probably_damaging(0.972) TCGA-P5-A5F4-01 3 128202816 128202816 C T GATA2 Missense_Mutation p.A302T 0.05 tolerated(0.17) probably_damaging(0.995) TCGA-P5-A5F4-01 3 160122126 160122126 A C SMC4 Missense_Mutation p.D174A 0.25 deleterious(0.01) benign(0.098) TCGA-P5-A5F4-01 3 31638330 31638330 G A STT3B Missense_Mutation p.C251Y 0.08 tolerated(0.14) benign(0.148) TCGA-P5-A5F4-01 7 23213883 23213883 C G KLHL7 Missense_Mutation p.T576S 0.19 tolerated_low_confidence(0.15) benign(0.053) TCGA-P5-A5F4-01 7 64441776 64441776 G A ZNF117 Missense_Mutation p.A8V 0.14 tolerated(0.07) possibly_damaging(0.652) TCGA-P5-A5F4-01 7 99631511 99631511 T C ZKSCAN1 Silent p.Y461Y 0.40 TCGA-P5-A5F4-01 8 11606556 11606556 G A GATA4 Missense_Mutation p.G249S 0.13 deleterious(0) probably_damaging(0.999) TCGA-P5-A5F4-01 8 99102249 99102249 G A C8orf47 Missense_Mutation p.R335H 0.28 tolerated(1) benign(0) TCGA-P5-A5F4-01 9 112918731 112918731 A G PALM2-AKAP2 Missense_Mutation p.Y1043C 0.16 deleterious(0) probably_damaging(0.999) TCGA-P5-A5F4-01 X 100615678 100615678 C T BTK Silent p.K218K 0.13 TCGA-P5-A5F4-01 X 105449981 105449981 T C MUM1L1 Missense_Mutation p.S186P 0.44 tolerated(0.36) benign(0.013) TCGA-P5-A5F4-01 X 2161263 2161263 T C DHRSX Missense_Mutation p.Y202C 0.21 deleterious(0) probably_damaging(1) TCGA-P5-A5F4-01 X 83116196 83116196 T C CYLC1 Silent p.S2S 0.20 TCGA-P5-A5F6-01 16 55794582 55794582 C T CES1P1 RNA 0.26 TCGA-P5-A5F6-01 20 24988567 24988567 C T ACSS1 Missense_Mutation p.R634H 0.08 tolerated(0.06) benign(0.329) TCGA-P5-A5F6-01 2 220150664 220150664 C T DNAJB2 3'UTR 0.11 TCGA-P5-A5F6-01 7 91865759 91865759 T C KRIT1 Silent p.T151T 0.23 TCGA-P5-A72U-01 10 124392720 124392720 C T DMBT1 Silent p.C2008C 0.25 TCGA-P5-A72U-01 10 124594347 124594347 G A CUZD1 Silent p.N419N 0.48 TCGA-P5-A72U-01 10 26377316 26377316 G A MYO3A Missense_Mutation p.R515Q 0.37 deleterious(0) probably_damaging(0.987) TCGA-P5-A72U-01 11 100998907 100998907 T C PGR Missense_Mutation p.T299A 0.25 tolerated_low_confidence(0.18) benign(0.005) TCGA-P5-A72U-01 11 19197407 19197407 G A ZDHHC13 Missense_Mutation p.C590Y 0.22 tolerated(0.19) possibly_damaging(0.889) TCGA-P5-A72U-01 11 210610 210610 C T RIC8A Missense_Mutation p.R256W 0.22 deleterious(0) benign(0.111) TCGA-P5-A72U-01 11 34533206 34533206 G A ELF5 5'UTR 0.33 TCGA-P5-A72U-01 11 4144500 4144500 C T RRM1 Silent p.T402T 0.17 TCGA-P5-A72U-01 11 47311780 47311780 C T MADD Silent p.H1028H 0.22 TCGA-P5-A72U-01 11 58972233 58972233 G A DTX4 Missense_Mutation p.V571I 0.28 deleterious(0) probably_damaging(0.929) TCGA-P5-A72U-01 11 7111074 7111074 C T RBMXL2 Silent p.R241R 0.17 TCGA-P5-A72U-01 12 121088424 121088424 G A CABP1 Intron 0.16 TCGA-P5-A72U-01 12 129569084 129569084 T C TMEM132D Missense_Mutation p.N536S 0.20 tolerated(1) benign(0.005) TCGA-P5-A72U-01 12 22005315 22005315 G A ABCC9 Missense_Mutation p.T877M 0.14 deleterious(0.02) benign(0.417) TCGA-P5-A72U-01 13 50123697 50123697 C T RCBTB1 Silent p.R314R 0.13 TCGA-P5-A72U-01 14 104378940 104378940 C T C14orf2 3'UTR 0.05 TCGA-P5-A72U-01 14 38723702 38723702 G A CLEC14A 3'UTR 0.15 TCGA-P5-A72U-01 15 90631619 90631620 - TGCCCT IDH2 In_Frame_Ins p.V217delinsEGM 0.19 TCGA-P5-A72U-01 16 17292229 17292229 G A XYLT1 Nonsense_Mutation p.Q377* 0.08 TCGA-P5-A72U-01 16 31388578 31388578 G A ITGAX Silent p.V927V 0.16 TCGA-P5-A72U-01 16 56792500 56792500 G T NUP93 Missense_Mutation p.R77L 0.20 deleterious(0.01) possibly_damaging(0.63) TCGA-P5-A72U-01 16 70287893 70287893 C T AARS Missense_Mutation p.E817K 0.17 tolerated(0.19) benign(0.437) TCGA-P5-A72U-01 17 15878711 15878711 A C ADORA2B 3'UTR 0.18 TCGA-P5-A72U-01 17 2268242 2268242 C T SGSM2 Missense_Mutation p.P351L 0.25 deleterious(0) probably_damaging(0.996) TCGA-P5-A72U-01 17 30807620 30807620 C T PSMD11 Missense_Mutation p.L414F 0.07 deleterious(0.01) benign(0.339) TCGA-P5-A72U-01 17 7724586 7724586 C T DNAH2 Missense_Mutation p.R3681C 0.10 benign(0.014) TCGA-P5-A72U-01 18 21484035 21484035 G T LAMA3 Missense_Mutation p.A2153S 0.21 probably_damaging(0.999) TCGA-P5-A72U-01 19 17927595 17927595 G A INSL3 3'UTR 0.25 TCGA-P5-A72U-01 19 49377238 49377238 C T PPP1R15A Missense_Mutation p.P250S 0.15 tolerated(0.24) probably_damaging(0.968) TCGA-P5-A72U-01 19 54314082 54314082 C T NLRP12 Silent p.A277A 0.21 TCGA-P5-A72U-01 19 58578819 58578819 G A ZNF135 Missense_Mutation p.E347K 0.22 tolerated(0.08) probably_damaging(0.997) TCGA-P5-A72U-01 19 6468897 6468897 C T DENND1C Missense_Mutation p.R492H 0.27 tolerated(0.1) benign(0.035) TCGA-P5-A72U-01 1 1959653 1959653 G A GABRD Missense_Mutation p.G205R 0.31 deleterious(0) probably_damaging(1) TCGA-P5-A72U-01 1 205308370 205308370 G A KLHDC8A Missense_Mutation p.R237W 0.28 deleterious(0.01) probably_damaging(0.96) TCGA-P5-A72U-01 20 8862382 8862382 C T PLCB1 Silent p.H1179H 0.24 TCGA-P5-A72U-01 21 42774001 42774001 C T MX2 Nonsense_Mutation p.Q507* 0.15 TCGA-P5-A72U-01 21 9907241 9907241 C T TEKT4P2 RNA 0.13 TCGA-P5-A72U-01 22 21349017 21349017 G A LZTR1 Splice_Site p.X595_splice 0.31 TCGA-P5-A72U-01 22 42266998 42266998 G A SREBF2 Missense_Mutation p.A276T 0.36 tolerated(1) benign(0.025) TCGA-P5-A72U-01 2 109384118 109384118 G A RANBP2 Missense_Mutation p.D2375N 0.18 deleterious(0) probably_damaging(0.967) TCGA-P5-A72U-01 2 170038125 170038125 G T LRP2 Nonsense_Mutation p.Y3334* 0.23 TCGA-P5-A72U-01 2 175979598 175979598 T A ATF2 Splice_Site p.X150_splice 0.23 TCGA-P5-A72U-01 2 231150512 231150512 C T SP140 Missense_Mutation p.A537V 0.12 tolerated(1) benign(0.002) TCGA-P5-A72U-01 2 68882314 68882314 C T PROKR1 Missense_Mutation p.A263V 0.20 tolerated(0.27) benign(0.029) TCGA-P5-A72U-01 3 111394231 111394231 C T PLCXD2 Missense_Mutation p.P47S 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-P5-A72U-01 3 24193966 24193966 T C THRB Missense_Mutation p.Y100C 0.28 deleterious(0.03) benign(0.295) TCGA-P5-A72U-01 4 107845811 107845811 C T DKK2 Silent p.P140P 0.14 TCGA-P5-A72U-01 4 164272199 164272199 T A NPY5R Silent p.T258T 0.10 TCGA-P5-A72U-01 4 73156714 73156714 G T ADAMTS3 Missense_Mutation p.T930N 0.14 tolerated(0.37) benign(0.148) TCGA-P5-A72U-01 4 8229065 8229065 G A SH3TC1 Silent p.G548G 0.14 TCGA-P5-A72U-01 5 140725053 140725053 G A PCDHGA3 Missense_Mutation p.A485T 0.23 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-P5-A72U-01 5 148632366 148632366 G A ABLIM3 Missense_Mutation p.R635Q 0.20 tolerated(0.2) benign(0.003) TCGA-P5-A72U-01 5 180376261 180376261 C T BTNL8 Silent p.H286H 0.07 TCGA-P5-A72U-01 5 19747223 19747223 G T CDH18 Missense_Mutation p.D117E 0.25 deleterious(0) probably_damaging(0.986) TCGA-P5-A72U-01 5 72419284 72419284 C T TMEM171 Silent p.F28F 0.05 TCGA-P5-A72U-01 5 7520913 7520913 C T ADCY2 Silent p.D157D 0.07 TCGA-P5-A72U-01 5 76028196 76028196 A G F2R Missense_Mutation p.N49S 0.19 tolerated(0.93) benign(0) TCGA-P5-A72U-01 6 33643522 33643522 C T ITPR3 Silent p.R1057R 0.24 TCGA-P5-A72U-01 6 50791273 50791273 T G TFAP2B Missense_Mutation p.Y79D 0.23 deleterious(0.01) possibly_damaging(0.468) TCGA-P5-A72U-01 7 148718147 148718147 C T PDIA4 Missense_Mutation p.E61K 0.15 deleterious(0.01) benign(0.304) TCGA-P5-A72U-01 7 6505884 6505884 G A KDELR2 Missense_Mutation p.T141I 0.19 deleterious(0) possibly_damaging(0.872) TCGA-P5-A72U-01 7 82581401 82581401 C T PCLO Silent p.Q2956Q 0.15 TCGA-P5-A72U-01 8 101620772 101620772 C T SNX31 Missense_Mutation p.D211N 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-P5-A72U-01 8 121706138 121706138 C T SNTB1 Missense_Mutation p.M194I 0.08 tolerated(0.76) benign(0.05) TCGA-P5-A72U-01 9 100843119 100843119 G T NANS Missense_Mutation p.D209Y 0.25 deleterious(0.01) probably_damaging(0.962) TCGA-P5-A72U-01 9 130285973 130285973 G A FAM129B Missense_Mutation p.R192W 0.15 deleterious(0) probably_damaging(1) TCGA-P5-A72U-01 9 139563048 139563048 C T EGFL7 Silent p.V40V 0.25 TCGA-P5-A72U-01 X 100075434 100075434 C T CSTF2 Missense_Mutation p.A10V 0.20 deleterious(0.01) benign(0.024) TCGA-P5-A72U-01 X 101911740 101911740 G T GPRASP1 Missense_Mutation p.A967S 0.06 tolerated(0.11) benign(0.008) TCGA-P5-A72U-01 X 30261033 30261033 C A MAGEB4 Missense_Mutation p.P261T 0.14 deleterious(0) probably_damaging(0.961) TCGA-P5-A72U-01 X 30873304 30873304 G T TAB3 Missense_Mutation p.P160T 0.22 tolerated(0.13) benign(0.113) TCGA-P5-A72U-01 X 77224771 77224771 G C PGAM4 Missense_Mutation p.P122R 0.22 tolerated(0.11) benign(0.211) TCGA-P5-A72U-01 X 83577004 83577004 G T HDX Missense_Mutation p.P656T 0.33 deleterious(0) probably_damaging(0.997) TCGA-P5-A72W-01 10 16526678 16526678 A G PTER Missense_Mutation p.T99A 0.41 deleterious(0) probably_damaging(0.986) TCGA-P5-A72W-01 10 97605280 97605280 A G ENTPD1 Missense_Mutation p.N259S 0.48 tolerated(1) benign(0.006) TCGA-P5-A72W-01 11 119206053 119206053 G T RNF26 Missense_Mutation p.R74L 0.26 tolerated(0.67) benign(0.324) TCGA-P5-A72W-01 11 1272726 1272726 A T MUC5B Silent p.G4872G 0.50 TCGA-P5-A72W-01 11 24753686 24753686 C G LUZP2 Missense_Mutation p.S68C 0.32 deleterious(0.01) possibly_damaging(0.824) TCGA-P5-A72W-01 11 55406056 55406056 G T OR4P4 Missense_Mutation p.V75L 0.43 deleterious(0.02) benign(0.016) TCGA-P5-A72W-01 11 57193592 57193592 C T SLC43A3 Silent p.L18L 0.11 TCGA-P5-A72W-01 11 65338967 65338967 G C SSSCA1 Missense_Mutation p.R121P 0.07 deleterious(0.01) benign(0.423) TCGA-P5-A72W-01 11 74618234 74618235 TC - XRRA1 Frame_Shift_Del p.R239Tfs*23 0.27 TCGA-P5-A72W-01 12 18847986 18847986 A T PLCZ1 Missense_Mutation p.L440Q 0.28 tolerated(0.25) probably_damaging(0.93) TCGA-P5-A72W-01 12 57586737 57586737 T A LRP1 Missense_Mutation p.D2513E 0.27 benign(0.001) TCGA-P5-A72W-01 12 8673742 8673742 G A CLEC4D Missense_Mutation p.D175N 0.48 tolerated(1) benign(0) TCGA-P5-A72W-01 14 106691787 106691787 G A IGHV3-21 Silent p.Y79Y 0.49 TCGA-P5-A72W-01 14 21702141 21702141 T A HNRNPC Missense_Mutation p.D71V 0.48 deleterious(0.04) possibly_damaging(0.589) TCGA-P5-A72W-01 14 21979313 21979314 AG - METTL3 Frame_Shift_Del p.L18Afs*30 0.22 TCGA-P5-A72W-01 14 22251215 22251215 G A TRAV7 Silent p.E2E 0.33 TCGA-P5-A72W-01 15 25932867 25932867 A G ATP10A Missense_Mutation p.F1092L 0.34 deleterious(0.01) benign(0.094) TCGA-P5-A72W-01 16 68010039 68010039 A G DPEP3 Missense_Mutation p.V421A 0.36 tolerated(0.22) probably_damaging(0.977) TCGA-P5-A72W-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.84 deleterious(0) probably_damaging(1) TCGA-P5-A72W-01 17 80361821 80361821 C T OGFOD3 Missense_Mutation p.V231M 0.33 deleterious(0) probably_damaging(0.977) TCGA-P5-A72W-01 19 45411116 45411116 T G APOE Missense_Mutation p.L48R 0.40 deleterious(0) probably_damaging(0.91) TCGA-P5-A72W-01 1 120263899 120263899 A G PHGDH Missense_Mutation p.N82S 0.19 deleterious(0.03) probably_damaging(0.963) TCGA-P5-A72W-01 1 153912182 153912182 C T DENND4B Missense_Mutation p.G568R 0.26 deleterious(0) probably_damaging(0.991) TCGA-P5-A72W-01 1 223946954 223946957 TCTC - CAPN2 Intron 0.25 TCGA-P5-A72W-01 1 228465550 228465550 C T OBSCN Nonsense_Mutation p.R2713* 0.47 TCGA-P5-A72W-01 1 234546220 234546220 C G TARBP1 Missense_Mutation p.D1255H 0.44 deleterious(0.01) probably_damaging(0.935) TCGA-P5-A72W-01 1 248551088 248551088 A G OR2T6 Missense_Mutation p.Y60C 0.18 deleterious(0) probably_damaging(0.986) TCGA-P5-A72W-01 20 33762688 33762688 G A PROCR Missense_Mutation p.G85D 0.52 tolerated(1) benign(0.002) TCGA-P5-A72W-01 20 57768516 57768516 G A ZNF831 Silent p.G814G 0.12 TCGA-P5-A72W-01 20 9400537 9400537 C G PLCB4 Missense_Mutation p.A700G 0.16 deleterious(0.04) probably_damaging(0.973) TCGA-P5-A72W-01 22 32266690 32266690 G A DEPDC5 Missense_Mutation p.G1140R 0.24 deleterious(0.04) benign(0.273) TCGA-P5-A72W-01 2 155555776 155555776 C G KCNJ3 Silent p.L163L 0.47 TCGA-P5-A72W-01 2 179455517 179455517 T G TTN Missense_Mutation p.E20312A 0.46 TCGA-P5-A72W-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A72W-01 2 220101997 220101997 C T GLB1L Missense_Mutation p.V588M 0.12 deleterious(0) probably_damaging(0.999) TCGA-P5-A72W-01 3 31774775 31774775 C G OSBPL10 Missense_Mutation p.E357Q 0.20 tolerated(0.4) benign(0.007) TCGA-P5-A72W-01 3 48618703 48618703 C T COL7A1 Missense_Mutation p.R1630Q 0.12 unknown(0) TCGA-P5-A72W-01 4 187530420 187530420 T G FAT1 Missense_Mutation p.I3375L 0.50 benign(0.092) TCGA-P5-A72W-01 5 131972886 131972886 G A RAD50 Missense_Mutation p.G1157R 0.39 tolerated(0.1) probably_damaging(0.929) TCGA-P5-A72W-01 6 129929056 129929056 C G ARHGAP18 Missense_Mutation p.A422P 0.58 deleterious(0) possibly_damaging(0.833) TCGA-P5-A72W-01 7 36462334 36462334 A G ANLN Missense_Mutation p.M798V 0.43 tolerated(0.88) benign(0) TCGA-P5-A72W-01 7 45222877 45222877 A G RAMP3 Missense_Mutation p.T105A 0.42 tolerated(0.09) possibly_damaging(0.832) TCGA-P5-A72W-01 8 124664297 124664297 G A KLHL38 Silent p.G290G 0.65 TCGA-P5-A72W-01 X 76890125 76890125 C T ATRX Missense_Mutation p.C1590Y 0.94 probably_damaging(0.999) TCGA-P5-A72X-01 14 106092260 106092260 G A IGHG4 Silent p.S48S 0.16 TCGA-P5-A72X-01 17 7578280 7578280 G A TP53 Missense_Mutation p.P190L 0.47 deleterious(0.05) possibly_damaging(0.812) TCGA-P5-A72X-01 19 14581115 14581115 G A PKN1 Missense_Mutation p.E818K 0.25 deleterious(0) possibly_damaging(0.821) TCGA-P5-A72X-01 19 47764023 47764023 G A CCDC9 Missense_Mutation p.R130Q 0.41 tolerated(0.06) possibly_damaging(0.883) TCGA-P5-A72X-01 1 21806573 21806573 A G NBPF3 Missense_Mutation p.E413G 0.31 tolerated(0.22) possibly_damaging(0.538) TCGA-P5-A72X-01 1 222717332 222717332 A T HHIPL2 Missense_Mutation p.L174H 0.05 deleterious(0) probably_damaging(0.975) TCGA-P5-A72X-01 1 229593964 229593964 T C NUP133 Missense_Mutation p.K975R 0.34 deleterious(0.03) probably_damaging(0.973) TCGA-P5-A72X-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A72X-01 2 67631709 67631709 C T ETAA1 Missense_Mutation p.T632I 0.25 tolerated(0.22) unknown(0) TCGA-P5-A72X-01 4 54364953 54364953 T C LNX1 Missense_Mutation p.N278S 0.40 tolerated(0.26) benign(0.072) TCGA-P5-A72X-01 9 117822018 117822018 C G TNC Missense_Mutation p.A1433P 0.29 deleterious(0.02) possibly_damaging(0.739) TCGA-P5-A72X-01 X 65252309 65252309 C A VSIG4 Splice_Site p.X232_splice 0.11 TCGA-P5-A72X-01 X 76855036 76855037 CT - ATRX Frame_Shift_Del p.G1934Efs*7 0.46 TCGA-P5-A72Z-01 10 50833584 50833584 A C CHAT Missense_Mutation p.Y273S 0.50 deleterious(0) probably_damaging(1) TCGA-P5-A72Z-01 10 518418 518418 G A DIP2C Nonsense_Mutation p.R77* 0.04 TCGA-P5-A72Z-01 11 5475052 5475052 T C OR51I2 Missense_Mutation p.S112P 0.34 deleterious(0) probably_damaging(0.997) TCGA-P5-A72Z-01 11 64694345 64694345 C A PPP2R5B Missense_Mutation p.L121I 0.07 tolerated(1) probably_damaging(0.973) TCGA-P5-A72Z-01 11 8943016 8943016 C T C11orf16 Silent p.Q417Q 0.06 TCGA-P5-A72Z-01 12 123687257 123687257 G T MPHOSPH9 Silent p.V413V 0.05 TCGA-P5-A72Z-01 16 67575592 67575592 T G FAM65A Silent p.S349S 0.41 TCGA-P5-A72Z-01 17 21318742 21318742 G A KCNJ12 Missense_Mutation p.G30S 0.13 tolerated(0.13) benign(0.405) TCGA-P5-A72Z-01 17 25631850 25631850 G A WSB1 Missense_Mutation p.D175N 0.48 deleterious(0.02) benign(0.01) TCGA-P5-A72Z-01 19 17362479 17362479 G A USHBP1 Missense_Mutation p.R612C 0.53 deleterious(0.04) possibly_damaging(0.732) TCGA-P5-A72Z-01 19 17405266 17405266 T C ABHD8 Missense_Mutation p.E327G 0.12 deleterious(0.02) benign(0.038) TCGA-P5-A72Z-01 19 42791805 42791805 A G CIC Missense_Mutation p.S231G 0.94 probably_damaging(0.997) TCGA-P5-A72Z-01 19 55494451 55494451 C T NLRP2 Missense_Mutation p.T462M 0.92 tolerated(0.63) benign(0.03) TCGA-P5-A72Z-01 1 152538494 152538494 C T LCE3E Missense_Mutation p.R64Q 0.09 tolerated_low_confidence(0.13) unknown(0) TCGA-P5-A72Z-01 1 202718147 202718147 C T KDM5B Missense_Mutation p.A648T 0.41 deleterious(0) possibly_damaging(0.694) TCGA-P5-A72Z-01 1 205128790 205128790 T C DSTYK Missense_Mutation p.E708G 0.13 deleterious(0.01) benign(0.297) TCGA-P5-A72Z-01 1 23778023 23778023 T C ASAP3 Splice_Site p.X142_splice 0.16 TCGA-P5-A72Z-01 20 18794772 18794772 G T SCP2D1 Missense_Mutation p.D105Y 0.37 deleterious(0) probably_damaging(1) TCGA-P5-A72Z-01 20 62172684 62172684 G A SRMS Missense_Mutation p.P382L 0.38 tolerated(0.12) benign(0.036) TCGA-P5-A72Z-01 21 11012949 11012949 A G TPTE RNA 0.20 TCGA-P5-A72Z-01 2 136566252 136566252 T C LCT Missense_Mutation p.N1222S 0.20 tolerated(0.52) benign(0.042) TCGA-P5-A72Z-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.59 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A72Z-01 2 209190050 209190050 A G PIKFYVE Missense_Mutation p.I839V 0.71 tolerated(0.4) benign(0.272) TCGA-P5-A72Z-01 2 44428625 44428625 A T PPM1B Missense_Mutation p.E96V 0.47 deleterious(0.02) benign(0.02) TCGA-P5-A72Z-01 3 33109728 33109728 C T GLB1 Missense_Mutation p.D151N 0.42 deleterious(0.02) probably_damaging(0.977) TCGA-P5-A72Z-01 4 153791963 153791963 A G ARFIP1 Silent p.R87R 0.43 TCGA-P5-A72Z-01 5 37001134 37001135 AG - NIPBL Frame_Shift_Del p.N1208Yfs*4 0.26 TCGA-P5-A72Z-01 6 152647526 152647526 G A SYNE1 Silent p.T5066T 0.41 TCGA-P5-A72Z-01 6 55360227 55360227 G A HMGCLL1 Missense_Mutation p.T292M 0.50 tolerated(0.19) benign(0.432) TCGA-P5-A72Z-01 6 56374648 56374648 G A DST Silent p.I3645I 0.67 TCGA-P5-A72Z-01 6 75994496 75994496 T C TMEM30A 5'UTR 0.30 TCGA-P5-A72Z-01 7 143826709 143826709 C T OR2A14 Silent p.C168C 0.29 TCGA-P5-A72Z-01 8 75227343 75227343 G A JPH1 Missense_Mutation p.R298C 0.09 deleterious(0) probably_damaging(0.999) TCGA-P5-A72Z-01 9 8521487 8521487 C T PTPRD Missense_Mutation p.G251R 0.70 tolerated(0.28) probably_damaging(1) TCGA-P5-A72Z-01 X 153068982 153068982 G A PDZD4 Silent p.G712G 0.30 TCGA-P5-A72Z-01 X 23723125 23723125 G A ACOT9 Silent p.L364L 0.17 TCGA-P5-A72Z-01 X 53226063 53226063 C T KDM5C Missense_Mutation p.R929Q 0.33 tolerated(0.22) benign(0.002) TCGA-P5-A730-01 10 45953818 45953818 T C MARCH8 Missense_Mutation p.I249V 0.09 tolerated(0.34) benign(0.001) TCGA-P5-A730-01 11 120350735 120350735 G A ARHGEF12 Nonsense_Mutation p.W1278* 0.23 TCGA-P5-A730-01 11 28098686 28098686 C G KIF18A Missense_Mutation p.Q431H 0.05 tolerated(0.11) possibly_damaging(0.907) TCGA-P5-A730-01 11 36595107 36595107 C T RAG1 Missense_Mutation p.P85S 0.28 tolerated_low_confidence(0.5) benign(0.001) TCGA-P5-A730-01 11 7981342 7981342 C T NLRP10 Missense_Mutation p.S606N 0.36 tolerated(0.06) benign(0) TCGA-P5-A730-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-P5-A730-01 17 3324033 3324033 G A OR3A3 Missense_Mutation p.V58I 0.24 tolerated(1) benign(0) TCGA-P5-A730-01 18 72913697 72913697 C G ZADH2 Missense_Mutation p.G270R 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-P5-A730-01 1 155034402 155034402 A G ADAM15 Missense_Mutation p.N792S 0.42 tolerated(0.71) benign(0.031) TCGA-P5-A730-01 1 248789593 248789593 C T OR2T11 Silent p.T279T 0.18 TCGA-P5-A730-01 2 50847169 50847169 A G NRXN1 Silent p.C477C 0.10 TCGA-P5-A730-01 2 98928369 98928369 G T VWA3B Missense_Mutation p.E1203D 0.21 tolerated_low_confidence(0.09) probably_damaging(0.935) TCGA-P5-A730-01 3 118865903 118865903 G A C3orf30 Silent p.Q289Q 0.06 TCGA-P5-A730-01 3 121554193 121554193 G T EAF2 Nonsense_Mutation p.E21* 0.38 TCGA-P5-A730-01 4 118975673 118975673 G A NDST3 Missense_Mutation p.R203H 0.42 tolerated(0.61) benign(0.001) TCGA-P5-A730-01 5 176940447 176940447 C T DDX41 Silent p.P379P 0.39 TCGA-P5-A730-01 5 36961653 36961653 T A NIPBL Nonsense_Mutation p.Y142* 0.40 TCGA-P5-A730-01 5 89924557 89924557 G A GPR98 Missense_Mutation p.D473N 0.26 benign(0) TCGA-P5-A730-01 6 25450191 25450191 A G LRRC16A Missense_Mutation p.D146G 0.47 deleterious(0.01) benign(0.284) TCGA-P5-A730-01 7 114655883 114655883 G T MDFIC Missense_Mutation p.C321F 0.11 deleterious(0) probably_damaging(0.999) TCGA-P5-A730-01 7 127255074 127255074 C T PAX4 Missense_Mutation p.G66R 0.08 deleterious(0) probably_damaging(1) TCGA-P5-A730-01 7 99015057 99015058 TA - BUD31 Frame_Shift_Del p.Y75* 0.21 TCGA-P5-A730-01 7 99697010 99697010 A C MCM7 Missense_Mutation p.V98G 0.42 deleterious(0) benign(0.001) TCGA-P5-A730-01 8 33346581 33346581 C T MAK16 Nonsense_Mutation p.R106* 0.35 TCGA-P5-A731-01 10 69669113 69669113 G C SIRT1 Missense_Mutation p.R424T 0.51 tolerated(0.12) benign(0.022) TCGA-P5-A731-01 12 113614883 113614883 A G DDX54 Silent p.F210F 0.35 TCGA-P5-A731-01 12 96400139 96400139 G A LTA4H Missense_Mutation p.L495F 0.29 tolerated(0.8) benign(0.009) TCGA-P5-A731-01 14 22409646 22409646 G A TRAV9-2 Missense_Mutation p.A46T 0.34 tolerated(1) benign(0.009) TCGA-P5-A731-01 14 65406518 65406519 - T GPX2 Frame_Shift_Ins p.Y88Vfs*? 0.24 TCGA-P5-A731-01 15 81627192 81627192 T C TMC3 Silent p.S776S 0.06 TCGA-P5-A731-01 16 81735339 81735339 G C CMIP Missense_Mutation p.E610D 0.36 deleterious(0.01) benign(0.058) TCGA-P5-A731-01 17 10298604 10298604 G A MYH8 Missense_Mutation p.T1603M 0.28 tolerated(0.06) benign(0.036) TCGA-P5-A731-01 17 55016349 55016349 C T COIL 3'UTR 0.52 TCGA-P5-A731-01 17 55918578 55918578 G T MRPS23 Missense_Mutation p.L87I 0.41 deleterious(0.01) probably_damaging(0.973) TCGA-P5-A731-01 19 37903535 37903535 C T ZNF569 Silent p.S675S 0.41 TCGA-P5-A731-01 19 42259554 42259554 C T CEACAM6 Missense_Mutation p.P3L 0.28 tolerated(0.11) benign(0.071) TCGA-P5-A731-01 1 155294614 155294614 C T RUSC1 Intron 0.33 TCGA-P5-A731-01 1 17085056 17085056 G A MST1L RNA 0.08 TCGA-P5-A731-01 22 23401783 23401783 C T RTDR1 Missense_Mutation p.A302T 0.42 tolerated(0.17) benign(0.279) TCGA-P5-A731-01 2 149679749 149679749 C T KIF5C Missense_Mutation p.T57M 0.23 deleterious(0) probably_damaging(0.974) TCGA-P5-A731-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A731-01 3 4829646 4829646 C T ITPR1 Nonsense_Mutation p.R2196* 0.23 TCGA-P5-A731-01 3 52539130 52539130 G A STAB1 Missense_Mutation p.A497T 0.37 tolerated(0.74) benign(0) TCGA-P5-A731-01 3 98235544 98235544 G A CLDND1 Missense_Mutation p.R264W 0.29 tolerated(0.05) benign(0.135) TCGA-P5-A731-01 6 7579935 7579935 T C DSP Missense_Mutation p.I1171T 0.44 benign(0.342) TCGA-P5-A731-01 7 138261187 138261187 G A TRIM24 Missense_Mutation p.G695E 0.08 tolerated(0.27) benign(0.042) TCGA-P5-A731-01 7 152012290 152012290 C A KMT2C Missense_Mutation p.D175Y 0.21 possibly_damaging(0.907) TCGA-P5-A731-01 8 107704967 107704967 C T OXR1 Silent p.V180V 0.28 TCGA-P5-A731-01 8 95178204 95178204 C A CDH17 Missense_Mutation p.G356V 0.33 deleterious(0.02) possibly_damaging(0.658) TCGA-P5-A731-01 9 103338864 103338864 G - TMEFF1 Frame_Shift_Del p.S376Hfs*17 0.22 TCGA-P5-A731-01 9 139326361 139326361 G A INPP5E Silent p.V488V 0.52 TCGA-P5-A731-01 X 133627577 133627577 T C HPRT1 Missense_Mutation p.S148P 0.41 tolerated(0.29) benign(0.005) TCGA-P5-A731-01 X 37027114 37027114 C T FAM47C Missense_Mutation p.R211C 0.39 tolerated(0.3) benign(0.008) TCGA-P5-A731-01 X 53579402 53579402 G C HUWE1 Missense_Mutation p.S2917R 0.17 benign(0.307) TCGA-P5-A733-01 10 1089303 1089305 AAG - IDI1 In_Frame_Del p.F114del 0.15 TCGA-P5-A733-01 11 26569051 26569051 T C ANO3 Missense_Mutation p.C415R 0.14 tolerated(0.13) possibly_damaging(0.449) TCGA-P5-A733-01 12 132549242 132549242 A G EP400 Silent p.K2788K 0.10 TCGA-P5-A733-01 12 48372074 48372074 C T COL2A1 Silent p.S1001S 0.21 TCGA-P5-A733-01 12 49440465 49440466 CA - KMT2D Nonsense_Mutation p.C1448* 0.24 TCGA-P5-A733-01 12 6128017 6128017 C T VWF Missense_Mutation p.E1523K 0.16 tolerated(0.4) possibly_damaging(0.849) TCGA-P5-A733-01 14 23468132 23468132 C T C14orf93 Missense_Mutation p.G34D 0.14 deleterious_low_confidence(0.02) benign(0.253) TCGA-P5-A733-01 14 23886878 23886878 C T MYH7 Missense_Mutation p.R1396Q 0.20 deleterious(0.03) probably_damaging(0.983) TCGA-P5-A733-01 16 15870007 15870007 G A MYH11 Missense_Mutation p.R280C 0.06 possibly_damaging(0.689) TCGA-P5-A733-01 16 29907101 29907101 C G SEZ6L2 Missense_Mutation p.G198R 0.39 deleterious(0.01) probably_damaging(0.932) TCGA-P5-A733-01 16 4165239 4165239 C T ADCY9 Missense_Mutation p.G69S 0.14 tolerated_low_confidence(0.74) benign(0.002) TCGA-P5-A733-01 17 26653930 26653930 G C TMEM97 3'UTR 0.38 TCGA-P5-A733-01 17 72608742 72608742 C T CD300E 3'UTR 0.29 TCGA-P5-A733-01 17 7578400 7578400 G C TP53 Missense_Mutation p.P177R 0.68 deleterious(0.02) probably_damaging(0.989) TCGA-P5-A733-01 18 673130 673130 A C TYMS 3'UTR 0.29 TCGA-P5-A733-01 19 6754940 6754940 G A SH2D3A Missense_Mutation p.R295W 0.16 deleterious(0) benign(0.243) TCGA-P5-A733-01 1 110585722 110585722 G A STRIP1 Missense_Mutation p.G300S 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-P5-A733-01 1 144816613 144816613 T C NBPF9 Missense_Mutation p.V248A 0.34 tolerated(0.1) probably_damaging(0.954) TCGA-P5-A733-01 1 161070000 161070000 C T KLHDC9 Silent p.L346L 0.41 TCGA-P5-A733-01 1 226252070 226252070 G A H3F3A Silent p.Q6Q 0.17 TCGA-P5-A733-01 1 40027846 40027846 T C PABPC4 Missense_Mutation p.M598V 0.41 tolerated(0.21) benign(0.057) TCGA-P5-A733-01 20 1460549 1460549 C T SIRPB2 Missense_Mutation p.E83K 0.08 tolerated(0.19) probably_damaging(0.975) TCGA-P5-A733-01 20 30432875 30432875 C T FOXS1 Silent p.E157E 0.23 TCGA-P5-A733-01 20 30676404 30676404 G A HCK Missense_Mutation p.G350D 0.27 deleterious(0) probably_damaging(0.95) TCGA-P5-A733-01 20 33439994 33439994 C T GGT7 Nonsense_Mutation p.W517* 0.28 TCGA-P5-A733-01 20 37174929 37174929 G T RALGAPB Missense_Mutation p.A920S 0.17 tolerated(0.09) benign(0.128) TCGA-P5-A733-01 21 46330699 46330699 T G ITGB2 Intron 0.16 TCGA-P5-A733-01 2 11716615 11716615 A G GREB1 Silent p.A197A 0.31 TCGA-P5-A733-01 2 169659066 169659066 A G NOSTRIN 5'UTR 0.67 TCGA-P5-A733-01 2 196738409 196738409 C T DNAH7 Missense_Mutation p.R2099Q 0.22 deleterious(0.01) probably_damaging(0.976) TCGA-P5-A733-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A733-01 2 233899291 233899291 G A NEU2 Missense_Mutation p.E223K 0.17 deleterious(0.02) probably_damaging(0.989) TCGA-P5-A733-01 2 27505613 27505613 T G TRIM54 Missense_Mutation p.V5G 0.14 tolerated(0.08) probably_damaging(0.95) TCGA-P5-A733-01 2 99279513 99279513 C T MGAT4A Missense_Mutation p.G178E 0.46 deleterious(0) possibly_damaging(0.71) TCGA-P5-A733-01 3 133495949 133495949 G A TF Silent p.S643S 0.12 TCGA-P5-A733-01 3 57489762 57489762 C T DNAH12 Missense_Mutation p.R356Q 0.39 tolerated(0.31) benign(0.119) TCGA-P5-A733-01 4 99339851 99339851 A C RAP1GDS1 Missense_Mutation p.K362N 0.34 deleterious(0.03) benign(0.007) TCGA-P5-A733-01 5 54403737 54403737 C T GZMA Missense_Mutation p.R111C 0.10 tolerated(0.07) possibly_damaging(0.704) TCGA-P5-A733-01 5 71756905 71756905 C T ZNF366 Missense_Mutation p.R140H 0.38 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-P5-A733-01 6 135784396 135784399 TTCT - AHI1 Frame_Shift_Del p.K265Nfs*17 0.16 TCGA-P5-A733-01 6 87968469 87968469 A T ZNF292 Missense_Mutation p.T1708S 0.10 tolerated_low_confidence(0.27) benign(0.007) TCGA-P5-A733-01 7 142013368 142013368 A G TRBV4-1 Missense_Mutation p.I75V 0.13 tolerated(0.3) benign(0.003) TCGA-P5-A733-01 7 64530936 64530936 C G SNORA15 RNA 0.26 TCGA-P5-A733-01 7 69364410 69364410 T G AUTS2 Missense_Mutation p.S150A 0.31 deleterious(0) possibly_damaging(0.817) TCGA-P5-A733-01 8 144992998 144992998 T C PLEC Missense_Mutation p.N3801S 0.07 benign(0.074) TCGA-P5-A733-01 9 77749285 77749285 C A OSTF1 Missense_Mutation p.Q128K 0.16 tolerated(0.92) possibly_damaging(0.706) TCGA-P5-A733-01 X 12904513 12904513 C T TLR7 Missense_Mutation p.R296C 0.53 deleterious(0.01) probably_damaging(0.982) TCGA-P5-A733-01 X 153496081 153496081 T G OPN1MW2 Missense_Mutation p.V270G 0.42 deleterious(0) probably_damaging(0.998) TCGA-P5-A733-01 X 69282578 69282578 C T OTUD6A Silent p.D68D 0.14 TCGA-P5-A733-01 X 70320668 70320668 C T FOXO4 Silent p.A196A 0.29 TCGA-P5-A733-01 X 76937833 76937836 TCTT - ATRX Frame_Shift_Del p.K971Tfs*31 0.55 TCGA-P5-A735-01 10 123843843 123843843 G C TACC2 Missense_Mutation p.V610L 0.41 benign(0.071) TCGA-P5-A735-01 11 47731973 47731973 T C AGBL2 Missense_Mutation p.K63R 0.06 tolerated_low_confidence(1) benign(0) TCGA-P5-A735-01 12 72094726 72094726 T C TMEM19 Missense_Mutation p.I321T 0.46 tolerated(0.5) benign(0.005) TCGA-P5-A735-01 15 23811405 23811405 C - MKRN3 Frame_Shift_Del p.P161Rfs*10 0.43 TCGA-P5-A735-01 15 65157873 65157873 C T PLEKHO2 Missense_Mutation p.S420L 0.18 tolerated(0.24) possibly_damaging(0.866) TCGA-P5-A735-01 17 7577096 7577096 T A TP53 Missense_Mutation p.D281V 0.27 deleterious(0) probably_damaging(0.99) TCGA-P5-A735-01 17 7579699 7579699 C T TP53 Splice_Site p.X32_splice 0.47 TCGA-P5-A735-01 18 56363642 56363642 G A MALT1 Missense_Mutation p.G141R 0.07 deleterious(0) probably_damaging(1) TCGA-P5-A735-01 19 40368644 40368644 A - FCGBP Frame_Shift_Del p.L4235Rfs*163 0.25 TCGA-P5-A735-01 19 49348627 49348627 C G PLEKHA4 Missense_Mutation p.K581N 0.36 deleterious(0.01) possibly_damaging(0.826) TCGA-P5-A735-01 19 49535280 49535280 C G CGB2 5'UTR 0.42 TCGA-P5-A735-01 19 50123662 50123662 C A PRR12 Silent p.R1851R 0.24 TCGA-P5-A735-01 1 158641928 158641928 C T SPTA1 Missense_Mutation p.R470H 0.58 tolerated(0.59) benign(0.001) TCGA-P5-A735-01 1 27101374 27101374 G A ARID1A Silent p.Q1552Q 0.40 TCGA-P5-A735-01 20 36993276 36993276 C T LBP Missense_Mutation p.A264V 0.45 tolerated(0.13) benign(0.26) TCGA-P5-A735-01 2 113742562 113742562 T A IL36G Missense_Mutation p.I149N 0.08 deleterious(0) probably_damaging(0.989) TCGA-P5-A735-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A735-01 2 219251432 219251432 G A SLC11A1 Silent p.T156T 0.43 TCGA-P5-A735-01 2 26684997 26684997 C T OTOF Missense_Mutation p.D1749N 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-P5-A735-01 2 37447581 37447581 T C CEBPZ Missense_Mutation p.R701G 0.38 deleterious(0) probably_damaging(0.993) TCGA-P5-A735-01 3 3084667 3084667 T A CNTN4 Missense_Mutation p.Y840N 0.33 deleterious(0) benign(0.005) TCGA-P5-A735-01 4 186379853 186379853 G A CCDC110 Missense_Mutation p.L630F 0.25 deleterious(0.05) benign(0.422) TCGA-P5-A735-01 4 187532792 187532792 C T FAT1 Missense_Mutation p.A3201T 0.25 probably_damaging(0.979) TCGA-P5-A735-01 5 128862012 128862012 A G ADAMTS19 Missense_Mutation p.S311G 0.49 tolerated(0.22) benign(0) TCGA-P5-A735-01 6 25921307 25921307 T A SLC17A2 Silent p.T163T 0.37 TCGA-P5-A735-01 6 33372952 33372953 GA - KIFC1 Frame_Shift_Del p.S361Wfs*10 0.35 TCGA-P5-A735-01 X 129205311 129205311 C T ELF4 Missense_Mutation p.G206S 0.30 deleterious(0) probably_damaging(0.998) TCGA-P5-A735-01 X 153133835 153133835 G A L1CAM Missense_Mutation p.S542F 0.40 tolerated(0.6) benign(0.256) TCGA-P5-A735-01 X 47979561 47979561 C T SSX6 RNA 0.09 TCGA-P5-A735-01 X 76940492 76940493 - G ATRX Frame_Shift_Ins p.F201Lfs*2 0.28 TCGA-P5-A736-01 10 37454053 37454053 G A ANKRD30A Silent p.K622K 0.45 TCGA-P5-A736-01 12 86373300 86373300 G A MGAT4C Nonsense_Mutation p.Q402* 0.31 TCGA-P5-A736-01 12 93181751 93181751 T C EEA1 Missense_Mutation p.I1014M 0.08 tolerated(0.23) benign(0.002) TCGA-P5-A736-01 12 93793075 93793076 AC - NUDT4 Frame_Shift_Del p.T156Sfs*7 0.09 TCGA-P5-A736-01 13 50586723 50586723 A C TRIM13 Missense_Mutation p.D219A 0.15 deleterious(0.01) probably_damaging(1) TCGA-P5-A736-01 13 95686882 95686882 C T ABCC4 Missense_Mutation p.A1283T 0.09 tolerated(0.05) benign(0.211) TCGA-P5-A736-01 15 72020908 72020908 C T THSD4 Missense_Mutation p.R460C 0.27 deleterious(0) probably_damaging(0.978) TCGA-P5-A736-01 16 1262079 1262079 C T CACNA1H Missense_Mutation p.A1567V 0.26 tolerated(0.11) probably_damaging(0.994) TCGA-P5-A736-01 17 57290560 57290560 A C SMG8 Silent p.T792T 0.04 TCGA-P5-A736-01 17 7578262 7578262 C G TP53 Missense_Mutation p.R196P 0.63 deleterious(0) probably_damaging(0.999) TCGA-P5-A736-01 18 61228381 61228381 A C SERPINB12 Missense_Mutation p.N150H 0.08 deleterious(0.03) possibly_damaging(0.726) TCGA-P5-A736-01 18 67872445 67872446 AA - RTTN Frame_Shift_Del p.F46Sfs*27 0.09 TCGA-P5-A736-01 19 12460800 12460800 G A ZNF442 Silent p.V533V 0.36 TCGA-P5-A736-01 19 17641666 17641666 C T FAM129C Missense_Mutation p.P84L 0.13 deleterious(0.03) probably_damaging(0.954) TCGA-P5-A736-01 19 56465952 56465954 CTT - NLRP8 In_Frame_Del p.F178del 0.15 TCGA-P5-A736-01 19 7677012 7677012 G A CAMSAP3 Missense_Mutation p.E572K 0.26 tolerated(0.28) benign(0.22) TCGA-P5-A736-01 1 237890418 237890418 T C RYR2 Missense_Mutation p.V3586A 0.09 benign(0.024) TCGA-P5-A736-01 21 35153849 35153849 C T ITSN1 Missense_Mutation p.H561Y 0.05 tolerated(0.16) benign(0.37) TCGA-P5-A736-01 2 166747103 166747103 C T TTC21B Missense_Mutation p.R1050Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-P5-A736-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A736-01 2 54081033 54081033 T C GPR75 Silent p.G287G 0.18 TCGA-P5-A736-01 3 13916574 13916574 G A WNT7A Silent p.P56P 0.14 TCGA-P5-A736-01 3 152058331 152058331 T C TMEM14E Silent p.G121G 0.06 TCGA-P5-A736-01 5 36035966 36035966 G A UGT3A2 Missense_Mutation p.T469M 0.15 deleterious(0.03) benign(0.017) TCGA-P5-A736-01 5 76129526 76129526 G A F2RL1 Missense_Mutation p.R365H 0.21 deleterious(0) probably_damaging(0.999) TCGA-P5-A736-01 6 136686877 136686877 G A MAP7 Silent p.G445G 0.06 TCGA-P5-A736-01 7 64388965 64388966 AT - ZNF273 Frame_Shift_Del p.H420Qfs*6 0.16 TCGA-P5-A736-01 7 82595691 82595691 G T PCLO Missense_Mutation p.P1138H 0.10 unknown(0) TCGA-P5-A736-01 7 87913524 87913525 TC - STEAP4 Frame_Shift_Del p.E20Dfs*9 0.17 TCGA-P5-A736-01 7 98935818 98935818 C A ARPC1A Missense_Mutation p.P27T 0.12 deleterious(0.04) benign(0.365) TCGA-P5-A736-01 9 124530868 124530868 A G DAB2IP Missense_Mutation p.S591G 0.39 deleterious(0) benign(0.221) TCGA-P5-A736-01 9 742321 742321 C G KANK1 Silent p.L1271L 0.06 TCGA-P5-A736-01 X 63579299 63579299 G A MTMR8 Missense_Mutation p.R45W 0.16 deleterious(0) benign(0.014) TCGA-P5-A736-01 X 6451773 6451773 A T VCX3A 3'UTR 0.18 TCGA-P5-A736-01 X 76829760 76829760 G C ATRX Nonsense_Mutation p.S2094* 0.13 TCGA-P5-A737-01 11 55322861 55322861 T C OR4C15 Missense_Mutation p.V360A 0.06 tolerated_low_confidence(0.2) benign(0.016) TCGA-P5-A737-01 11 59612897 59612897 G A GIF Silent p.S10S 0.12 TCGA-P5-A737-01 12 46758436 46758436 A G SLC38A2 Silent p.F232F 0.44 TCGA-P5-A737-01 15 28202829 28202829 C T OCA2 Silent p.P563P 0.12 TCGA-P5-A737-01 15 99678297 99678297 G C TTC23 Nonsense_Mutation p.S421* 0.50 TCGA-P5-A737-01 16 3606946 3606946 C T NLRC3 Missense_Mutation p.A764T 0.50 tolerated(0.09) possibly_damaging(0.855) TCGA-P5-A737-01 19 14830055 14830055 C G ZNF333 Missense_Mutation p.T639S 0.09 tolerated(0.13) benign(0.001) TCGA-P5-A737-01 1 152732999 152732999 G A KPRP Missense_Mutation p.R312H 0.05 tolerated(0.22) benign(0.002) TCGA-P5-A737-01 1 248616513 248616513 C T OR2T2 Missense_Mutation p.R139C 0.26 tolerated(0.1) benign(0.003) TCGA-P5-A737-01 1 248844917 248844917 T C OR14I1 Missense_Mutation p.Q230R 0.07 deleterious(0.01) benign(0.142) TCGA-P5-A737-01 1 27875316 27875316 C T AHDC1 Missense_Mutation p.G1104E 0.11 deleterious(0.03) probably_damaging(0.969) TCGA-P5-A737-01 1 43904411 43904411 C T SZT2 Missense_Mutation p.R2127C 0.81 deleterious(0) probably_damaging(0.999) TCGA-P5-A737-01 22 50591600 50591600 G C MOV10L1 Missense_Mutation p.E1007Q 0.52 tolerated(0.07) possibly_damaging(0.77) TCGA-P5-A737-01 2 169939889 169939889 A C DHRS9 Missense_Mutation p.T122P 0.58 deleterious(0.04) benign(0.064) TCGA-P5-A737-01 2 186673362 186673362 A G FSIP2 Missense_Mutation p.I6532M 0.56 benign(0.132) TCGA-P5-A737-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.62 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A737-01 2 65540590 65540590 G C SPRED2 3'UTR 0.54 TCGA-P5-A737-01 3 42632448 42632448 C T SS18L2 Missense_Mutation p.T20I 0.37 deleterious(0.04) benign(0.089) TCGA-P5-A737-01 4 25678090 25678090 C T SLC34A2 Missense_Mutation p.R598C 0.05 deleterious(0.01) possibly_damaging(0.88) TCGA-P5-A737-01 4 57179385 57179385 G A KIAA1211 Missense_Mutation p.R126Q 0.09 deleterious(0) probably_damaging(0.988) TCGA-P5-A737-01 5 145442272 145442272 G A SH3RF2 3'UTR 0.34 TCGA-P5-A737-01 5 37703134 37703134 T - WDR70 Frame_Shift_Del p.F455Sfs*13 0.12 TCGA-P5-A737-01 5 66055567 66055567 C T MAST4 Missense_Mutation p.P132S 0.08 benign(0.147) TCGA-P5-A737-01 6 26107808 26107808 C T HIST1H1T Missense_Mutation p.G172R 0.33 tolerated(0.18) benign(0.031) TCGA-P5-A737-01 6 79770432 79770432 T G PHIP Missense_Mutation p.Q98P 0.28 tolerated(0.17) possibly_damaging(0.84) TCGA-P5-A737-01 7 48311922 48311922 A G ABCA13 Missense_Mutation p.M887V 0.39 benign(0) TCGA-P5-A737-01 9 107361002 107361002 C T OR13C5 Silent p.S231S 0.38 TCGA-P5-A737-01 9 116136675 116136675 C T HDHD3 5'UTR 0.40 TCGA-P5-A737-01 X 153697253 153697253 G A PLXNA3 Missense_Mutation p.A1459T 0.07 deleterious(0) probably_damaging(0.999) TCGA-P5-A77W-01 10 95556791 95556791 T C LGI1 Missense_Mutation p.L302P 0.35 deleterious(0.01) probably_damaging(1) TCGA-P5-A77W-01 11 30938455 30938455 T C DCDC1 Silent p.K1138K 0.05 TCGA-P5-A77W-01 11 57259302 57259302 G A SLC43A1 Missense_Mutation p.P302L 0.09 deleterious(0) probably_damaging(0.996) TCGA-P5-A77W-01 12 54651393 54651393 T - CBX5 Frame_Shift_Del p.E15Rfs*12 0.25 TCGA-P5-A77W-01 12 66641820 66641820 T G IRAK3 Missense_Mutation p.L554V 0.42 tolerated_low_confidence(0.51) benign(0.003) TCGA-P5-A77W-01 13 41943360 41943362 GAA - NAA16 In_Frame_Del p.E634del 0.26 TCGA-P5-A77W-01 14 22102600 22102600 C A OR10G2 Missense_Mutation p.Q133H 0.65 tolerated(1) benign(0.001) TCGA-P5-A77W-01 14 57947418 57947418 T A C14orf105 Missense_Mutation p.S184C 0.11 deleterious(0) possibly_damaging(0.773) TCGA-P5-A77W-01 14 57947420 57947420 T G C14orf105 Missense_Mutation p.Q183P 0.11 deleterious(0) possibly_damaging(0.731) TCGA-P5-A77W-01 17 16829265 16829265 G A TBC1D27 RNA 0.30 TCGA-P5-A77W-01 17 43344891 43344893 CTC - MAP3K14-AS1 RNA 0.44 TCGA-P5-A77W-01 19 10672385 10672385 G A KRI1 Missense_Mutation p.S155L 0.04 tolerated(0.19) benign(0.002) TCGA-P5-A77W-01 19 17488042 17488042 C T PLVAP Missense_Mutation p.R19Q 0.37 deleterious(0.01) probably_damaging(0.946) TCGA-P5-A77W-01 19 42795197 42795198 TG - CIC Frame_Shift_Del p.V760Hfs*2 0.40 TCGA-P5-A77W-01 19 6739763 6739763 C T TRIP10 5'UTR 0.29 TCGA-P5-A77W-01 1 110121875 110121876 - G GNAI3 Frame_Shift_Ins p.M119Hfs*10 0.11 TCGA-P5-A77W-01 1 185988673 185988673 T A HMCN1 Missense_Mutation p.V1824D 0.28 probably_damaging(0.993) TCGA-P5-A77W-01 1 185988674 185988674 T G HMCN1 Silent p.V1824V 0.28 TCGA-P5-A77W-01 1 185988675 185988675 C T HMCN1 Missense_Mutation p.P1825S 0.28 probably_damaging(0.995) TCGA-P5-A77W-01 1 27088645 27088646 TA - ARID1A Frame_Shift_Del p.M753Afs*63 0.09 TCGA-P5-A77W-01 22 46652877 46652877 C A PKDREJ Nonsense_Mutation p.E2115* 0.08 TCGA-P5-A77W-01 22 50484310 50484310 G A TTLL8 Silent p.T197T 0.27 TCGA-P5-A77W-01 2 160741690 160741690 G T LY75-CD302 Missense_Mutation p.P343Q 0.40 tolerated(0.53) probably_damaging(0.994) TCGA-P5-A77W-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A77W-01 2 37306396 37306396 G A HEATR5B Nonsense_Mutation p.R69* 0.30 TCGA-P5-A77W-01 3 113724396 113724396 C A KIAA1407 Missense_Mutation p.K609N 0.07 tolerated(1) benign(0.003) TCGA-P5-A77W-01 3 39438064 39438064 A G SLC25A38 3'UTR 0.06 TCGA-P5-A77W-01 5 101627180 101627180 T C SLCO4C1 Silent p.V162V 0.16 TCGA-P5-A77W-01 5 7900290 7900290 G T MTRR 3'UTR 0.31 TCGA-P5-A77W-01 6 2900835 2900836 AG - SERPINB9 Frame_Shift_Del p.L4Ffs*2 0.09 TCGA-P5-A77W-01 6 46793156 46793156 T C MEP1A Missense_Mutation p.F235S 0.31 deleterious(0) probably_damaging(0.996) TCGA-P5-A77W-01 8 24199150 24199150 G A ADAM28 Silent p.S570S 0.05 TCGA-P5-A77W-01 8 56699384 56699384 A T TGS1 Silent p.T309T 0.29 TCGA-P5-A77W-01 8 98943528 98943528 G T MATN2 Missense_Mutation p.V164F 0.36 deleterious(0) possibly_damaging(0.865) TCGA-P5-A77W-01 8 99142398 99142398 A G POP1 Missense_Mutation p.T227A 0.06 deleterious(0) probably_damaging(0.999) TCGA-P5-A77W-01 X 100910841 100910844 ATAG - ARMCX2 Frame_Shift_Del p.I577Mfs*36 0.08 TCGA-P5-A77W-01 X 117744241 117744241 C T DOCK11 Nonsense_Mutation p.R986* 0.41 TCGA-P5-A77W-01 X 18936876 18936876 C T PHKA2 Missense_Mutation p.R687H 0.36 tolerated(0.61) benign(0.001) TCGA-P5-A77W-01 X 40495933 40495933 G A CXorf38 Missense_Mutation p.P218L 0.35 deleterious(0.01) probably_damaging(0.973) TCGA-P5-A77X-01 11 113704275 113704276 TT - USP28 Frame_Shift_Del p.K209Efs*21 0.31 TCGA-P5-A77X-01 11 18723300 18723300 T G TMEM86A Missense_Mutation p.F156C 0.41 tolerated(0.06) probably_damaging(0.995) TCGA-P5-A77X-01 11 55037997 55037997 G A TRIM48 3'UTR 0.29 TCGA-P5-A77X-01 12 122396945 122396945 G T WDR66 Missense_Mutation p.R693I 0.05 deleterious(0) probably_damaging(0.936) TCGA-P5-A77X-01 13 46549624 46549625 TT - ZC3H13 Frame_Shift_Del p.E754Gfs*28 0.23 TCGA-P5-A77X-01 13 53603147 53603147 G A OLFM4 Missense_Mutation p.S59N 0.27 tolerated_low_confidence(0.22) unknown(0) TCGA-P5-A77X-01 13 97600364 97600364 C T RP11-65L19.4 5'Flank 0.45 TCGA-P5-A77X-01 15 25475834 25475834 G A SNORD115-33 5'Flank 0.11 TCGA-P5-A77X-01 17 29220737 29220740 AAAG - ATAD5 Frame_Shift_Del p.K1623Nfs*23 0.44 TCGA-P5-A77X-01 17 30534025 30534025 G A RHOT1 Missense_Mutation p.E505K 0.32 tolerated(0.14) possibly_damaging(0.607) TCGA-P5-A77X-01 17 44630791 44630793 AAG - LRRC37A2 In_Frame_Del p.E1613del 0.09 TCGA-P5-A77X-01 19 16040277 16040277 G A CYP4F11 Silent p.T111T 0.37 TCGA-P5-A77X-01 19 3785085 3785086 CA - MATK Intron 0.33 TCGA-P5-A77X-01 19 42795543 42795544 AA - CIC Frame_Shift_Del p.K875Sfs*55 0.38 TCGA-P5-A77X-01 1 196973838 196973838 A G CFHR5 Missense_Mutation p.T460A 0.37 deleterious(0.01) benign(0.001) TCGA-P5-A77X-01 1 248366669 248366669 A G OR2M3 Silent p.Q100Q 0.10 TCGA-P5-A77X-01 1 78433848 78433851 CAGT - FUBP1 Splice_Site p.X83_splice 0.50 TCGA-P5-A77X-01 1 86826179 86826179 T C ODF2L Missense_Mutation p.E395G 0.41 deleterious(0) probably_damaging(1) TCGA-P5-A77X-01 21 47545900 47545900 G A COL6A2 Missense_Mutation p.R724H 0.18 tolerated(0.1) possibly_damaging(0.735) TCGA-P5-A77X-01 2 170027173 170027173 G A LRP2 Silent p.P3756P 0.43 TCGA-P5-A77X-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A77X-01 2 32445757 32445757 A G SLC30A6 Missense_Mutation p.N494S 0.09 tolerated_low_confidence(0.57) benign(0.004) TCGA-P5-A77X-01 3 118909856 118909856 A G UPK1B Missense_Mutation p.M125V 0.03 deleterious(0) probably_damaging(0.94) TCGA-P5-A77X-01 3 155860969 155860969 T C KCNAB1 Intron 0.35 TCGA-P5-A77X-01 3 38548446 38548449 TAGT - EXOG Frame_Shift_Del p.S213Tfs*3 0.27 TCGA-P5-A77X-01 4 10445618 10445618 T C ZNF518B Missense_Mutation p.R779G 0.31 deleterious(0) possibly_damaging(0.796) TCGA-P5-A77X-01 4 109675776 109675776 C G ETNPPL Silent p.V167V 0.25 TCGA-P5-A77X-01 4 170476964 170476964 C T NEK1 Missense_Mutation p.G490E 0.32 deleterious(0.01) benign(0.238) TCGA-P5-A77X-01 4 7533275 7533275 G A SORCS2 Silent p.T189T 0.35 TCGA-P5-A77X-01 4 8616093 8616093 C T CPZ Silent p.S457S 0.52 TCGA-P5-A77X-01 5 160061405 160061405 C T ATP10B Missense_Mutation p.R446Q 0.23 deleterious(0) probably_damaging(0.995) TCGA-P5-A77X-01 5 37154027 37154030 ATAG - C5orf42 Frame_Shift_Del p.L2675Cfs*22 0.34 TCGA-P5-A77X-01 6 143771733 143771735 CTC - ADAT2 In_Frame_Del p.E21del 0.26 TCGA-P5-A77X-01 6 150001374 150001376 GAA - LATS1 In_Frame_Del p.L743del 0.21 TCGA-P5-A77X-01 7 42966160 42966160 A G PSMA2 Missense_Mutation p.Y76H 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-P5-A77X-01 9 116080790 116080790 T A WDR31 Missense_Mutation p.D303V 0.18 deleterious(0) probably_damaging(0.974) TCGA-P5-A77X-01 9 79322596 79322596 C T PRUNE2 Missense_Mutation p.D1532N 0.27 tolerated(0.28) benign(0.367) TCGA-P5-A77X-01 X 108719067 108719067 C A GUCY2F Silent p.L33L 0.44 TCGA-P5-A77X-01 X 153780226 153780226 G A IKBKG Silent p.R71R 0.06 TCGA-P5-A77X-01 X 29414470 29414470 A C IL1RAPL1 Missense_Mutation p.K153T 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-P5-A77X-01 X 50377747 50377747 C A SHROOM4 Silent p.G442G 0.36 TCGA-P5-A780-01 10 100374723 100374723 G A HPSE2 Missense_Mutation p.R420W 0.13 deleterious(0.04) probably_damaging(0.997) TCGA-P5-A780-01 10 24890933 24890933 G A ARHGAP21 Nonsense_Mutation p.R941* 0.57 TCGA-P5-A780-01 10 95111508 95111508 C T MYOF Missense_Mutation p.D1193N 0.19 tolerated(1) benign(0.01) TCGA-P5-A780-01 11 129784846 129784846 G A PRDM10 Missense_Mutation p.T869I 0.36 deleterious(0.02) benign(0.02) TCGA-P5-A780-01 12 10786670 10786670 T C STYK1 Missense_Mutation p.I36V 0.41 tolerated(0.83) benign(0.001) TCGA-P5-A780-01 12 24995135 24995135 G A BCAT1 Missense_Mutation p.A245V 0.07 tolerated(1) probably_damaging(1) TCGA-P5-A780-01 12 53412741 53412741 C T EIF4B Missense_Mutation p.P104L 0.15 deleterious(0) possibly_damaging(0.908) TCGA-P5-A780-01 12 57323245 57323245 C T SDR9C7 Missense_Mutation p.R218H 0.27 tolerated(0.31) benign(0.002) TCGA-P5-A780-01 13 77663122 77663122 G A MYCBP2 Missense_Mutation p.R3486W 0.10 probably_damaging(0.991) TCGA-P5-A780-01 14 102510228 102510228 C T DYNC1H1 Missense_Mutation p.A4177V 0.05 benign(0.271) TCGA-P5-A780-01 14 21964706 21964706 A G TOX4 Missense_Mutation p.D603G 0.06 deleterious(0.01) probably_damaging(0.956) TCGA-P5-A780-01 14 24793576 24793576 C T ADCY4 Silent p.T615T 0.13 TCGA-P5-A780-01 15 52901729 52901729 T C FAM214A Missense_Mutation p.D461G 0.11 tolerated_low_confidence(1) benign(0) TCGA-P5-A780-01 15 60644017 60644017 T C ANXA2 Silent p.V246V 0.08 TCGA-P5-A780-01 17 28960294 28960294 C T LRRC37BP1 RNA 0.40 TCGA-P5-A780-01 17 4534928 4534928 C T ALOX15 Silent p.R652R 0.15 TCGA-P5-A780-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.71 deleterious(0) probably_damaging(0.999) TCGA-P5-A780-01 17 78055796 78055796 A G CCDC40 Missense_Mutation p.N643S 0.12 tolerated(0.66) benign(0.002) TCGA-P5-A780-01 18 61468117 61468117 C T SERPINB7 Silent p.V205V 0.16 TCGA-P5-A780-01 18 72999831 72999831 C T TSHZ1 Silent p.S778S 0.04 TCGA-P5-A780-01 19 22379553 22379553 T C ZNF676 5'UTR 0.11 TCGA-P5-A780-01 19 23927680 23927680 T C ZNF681 Silent p.K224K 0.36 TCGA-P5-A780-01 19 47219549 47219549 C T PRKD2 Missense_Mutation p.E27K 0.11 tolerated_low_confidence(0.54) unknown(0) TCGA-P5-A780-01 1 149783896 149783896 G T HIST2H2BF 5'UTR 0.21 TCGA-P5-A780-01 1 156897294 156897294 G A LRRC71 Silent p.A223A 0.25 TCGA-P5-A780-01 1 223285784 223285784 G A TLR5 Missense_Mutation p.T197M 0.17 tolerated(0.22) benign(0.014) TCGA-P5-A780-01 1 248436203 248436203 G A OR2T33 Missense_Mutation p.T305M 0.42 deleterious(0.01) benign(0.11) TCGA-P5-A780-01 1 27101119 27101119 C T ARID1A Silent p.P1467P 0.10 TCGA-P5-A780-01 20 54573643 54573643 C T CBLN4 Silent p.T192T 0.14 TCGA-P5-A780-01 20 629365 629365 A C SRXN1 Missense_Mutation p.L136W 0.06 deleterious(0) probably_damaging(0.999) TCGA-P5-A780-01 22 44514963 44514963 A G PARVB Missense_Mutation p.I140V 0.37 tolerated(0.66) possibly_damaging(0.664) TCGA-P5-A780-01 2 179238675 179238675 G A OSBPL6 Missense_Mutation p.R510H 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-P5-A780-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A780-01 2 21263858 21263858 A C APOB Missense_Mutation p.L112W 0.21 probably_damaging(0.984) TCGA-P5-A780-01 2 241631329 241631329 C T AQP12A 5'UTR 0.07 TCGA-P5-A780-01 2 29074043 29074043 C A TRMT61B Nonsense_Mutation p.G403* 0.34 TCGA-P5-A780-01 3 20215787 20215787 T A SGOL1 Silent p.T412T 0.17 TCGA-P5-A780-01 3 53694205 53694205 C T CACNA1D Silent p.G223G 0.34 TCGA-P5-A780-01 4 104030019 104030019 G C CENPE Missense_Mutation p.S2651C 0.10 probably_damaging(0.94) TCGA-P5-A780-01 5 140481350 140481350 C G PCDHB3 Missense_Mutation p.L373V 0.21 tolerated_low_confidence(0.15) benign(0.008) TCGA-P5-A780-01 5 31534425 31534425 C T C5orf22 Missense_Mutation p.A43V 0.14 tolerated(0.5) benign(0.052) TCGA-P5-A780-01 5 71493378 71493378 G A MAP1B Missense_Mutation p.R1399H 0.06 probably_damaging(0.98) TCGA-P5-A780-01 6 117681518 117681518 C A ROS1 Missense_Mutation p.K1144N 0.08 tolerated(0.4) benign(0.007) TCGA-P5-A780-01 6 154567848 154567848 G A IPCEF1 Silent p.G41G 0.37 TCGA-P5-A780-01 7 100552268 100552268 T C MUC3A Missense_Mutation p.V340A 0.22 tolerated(0.1) possibly_damaging(0.804) TCGA-P5-A780-01 7 113558563 113558563 T C PPP1R3A Silent p.L163L 0.22 TCGA-P5-A780-01 7 122338418 122338418 G C RNF133 Missense_Mutation p.I185M 0.18 tolerated(0.24) probably_damaging(0.997) TCGA-P5-A780-01 7 123594538 123594538 G A SPAM1 Missense_Mutation p.R305H 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-P5-A780-01 7 143771700 143771700 C T OR2A25 Nonsense_Mutation p.R130* 0.30 TCGA-P5-A780-01 7 92734114 92734114 C T SAMD9 Missense_Mutation p.E433K 0.49 deleterious(0) probably_damaging(0.999) TCGA-P5-A780-01 7 94041967 94041967 T C COL1A2 Silent p.I492I 0.17 TCGA-P5-A780-01 7 98256572 98256572 C T NPTX2 Silent p.D328D 0.08 TCGA-P5-A780-01 8 41575698 41575698 C T ANK1 Missense_Mutation p.A411T 0.06 deleterious(0) probably_damaging(1) TCGA-P5-A780-01 8 9912035 9912035 G C MSRA Silent p.S3S 0.07 TCGA-P5-A780-01 9 131020288 131020288 C T GOLGA2 Missense_Mutation p.A800T 0.17 deleterious(0) probably_damaging(0.992) TCGA-P5-A780-01 9 138667250 138667250 C T KCNT1 Missense_Mutation p.R780W 0.08 deleterious(0) probably_damaging(0.996) TCGA-P5-A780-01 9 33933502 33933502 G A UBAP2 Silent p.L698L 0.25 TCGA-P5-A780-01 9 73458024 73458024 G A TRPM3 Silent p.G232G 0.15 TCGA-P5-A780-01 9 84199093 84199093 C T TLE1 3'UTR 0.33 TCGA-P5-A780-01 X 10107547 10107547 G A WWC3 Missense_Mutation p.S1060N 0.16 tolerated(0.5) benign(0.003) TCGA-P5-A780-01 X 10442675 10442675 C G MID1 Missense_Mutation p.D377H 0.37 deleterious(0) benign(0.037) TCGA-P5-A780-01 X 129190022 129190022 T C BCORL1 Missense_Mutation p.S1683P 0.08 benign(0.005) TCGA-P5-A780-01 X 132160182 132160182 A G USP26 Silent p.F689F 0.27 TCGA-P5-A780-01 X 139865640 139865640 T C CDR1 3'UTR 0.12 TCGA-P5-A780-01 X 140271196 140271196 T C LDOC1 Missense_Mutation p.E4G 0.22 deleterious(0.01) possibly_damaging(0.859) TCGA-P5-A780-01 X 140335727 140335727 G A SPANXC Nonsense_Mutation p.R73* 0.23 TCGA-P5-A780-01 X 149639254 149639254 A G MAMLD1 Missense_Mutation p.Q445R 0.11 deleterious(0) possibly_damaging(0.9) TCGA-P5-A780-01 X 64947733 64947733 A G MSN Missense_Mutation p.T52A 0.47 tolerated(0.17) benign(0.011) TCGA-P5-A781-01 10 105762041 105762041 C T SLK Missense_Mutation p.R369C 0.09 deleterious(0.03) benign(0.002) TCGA-P5-A781-01 11 27077073 27077073 A G BBOX1 Silent p.V32V 0.14 TCGA-P5-A781-01 11 64622163 64622163 C T EHD1 Missense_Mutation p.G416D 0.04 tolerated(0.08) benign(0.004) TCGA-P5-A781-01 12 21176193 21176193 G A SLCO1B7 Missense_Mutation p.M186I 0.13 tolerated(0.12) benign(0.005) TCGA-P5-A781-01 17 36871961 36871961 C T MLLT6 Missense_Mutation p.H306Y 0.31 deleterious(0) unknown(0) TCGA-P5-A781-01 1 1848242 1848242 A T CALML6 Missense_Mutation p.H102L 0.08 tolerated(0.21) benign(0.023) TCGA-P5-A781-01 20 19955639 19955639 C T RIN2 Missense_Mutation p.R373W 0.13 tolerated(0.05) benign(0.002) TCGA-P5-A781-01 22 20104015 20104015 C A TRMT2A Missense_Mutation p.A49S 0.06 tolerated_low_confidence(0.61) benign(0.05) TCGA-P5-A781-01 2 101620837 101620837 G A RPL31 Intron 0.47 TCGA-P5-A781-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-P5-A781-01 3 10157366 10157366 C G BRK1 5'UTR 0.38 TCGA-P5-A781-01 3 128182137 128182137 G A DNAJB8 5'UTR 0.10 TCGA-P5-A781-01 5 150948500 150948500 A G FAT2 5'UTR 0.16 TCGA-P5-A781-01 6 28887928 28887928 C T TRIM27 Missense_Mutation p.R203H 0.13 tolerated(0.06) benign(0.105) TCGA-P5-A781-01 7 148979281 148979281 C - ZNF783 Frame_Shift_Del p.Q498Sfs*67 0.11 TCGA-P5-A781-01 8 118183316 118183316 T A SLC30A8 Silent p.I291I 0.09 TCGA-P5-A781-01 8 13959903 13959903 C T SGCZ Silent p.L242L 0.05 TCGA-P5-A781-01 8 142185447 142185447 C T DENND3 Silent p.S728S 0.38 TCGA-P5-A781-01 X 53576145 53576145 G T HUWE1 Missense_Mutation p.D3270E 0.17 benign(0.417) TCGA-P5-A781-01 X 63411230 63411230 C T AMER1 Missense_Mutation p.R646Q 0.35 tolerated(0.56) benign(0.007) TCGA-P5-A781-01 X 69713223 69713223 C G DLG3 Intron 0.27 TCGA-P5-A781-01 X 85906101 85906101 A G DACH2 Missense_Mutation p.N235D 0.31 deleterious(0.03) probably_damaging(0.993) TCGA-QH-A65R-01 10 33481224 33481224 T C NRP1 Missense_Mutation p.I683V 0.36 tolerated(0.57) benign(0.034) TCGA-QH-A65R-01 10 72357828 72357828 C T PRF1 Missense_Mutation p.R550Q 0.40 deleterious(0.03) benign(0.241) TCGA-QH-A65R-01 11 102650420 102650423 CTTT - MMP10 Frame_Shift_Del p.K54Tfs*20 0.12 TCGA-QH-A65R-01 13 32805370 32805371 AA - FRY Frame_Shift_Del p.K1821Efs*3 0.11 TCGA-QH-A65R-01 14 99641314 99641314 C T BCL11B Missense_Mutation p.R620H 0.28 deleterious(0.02) possibly_damaging(0.834) TCGA-QH-A65R-01 16 2506782 2506782 G A CCNF Missense_Mutation p.A708T 0.05 tolerated_low_confidence(0.3) benign(0.004) TCGA-QH-A65R-01 17 10300223 10300223 G A MYH8 Missense_Mutation p.T1420M 0.12 deleterious(0.02) probably_damaging(0.964) TCGA-QH-A65R-01 17 27093645 27093645 T C FAM222B Missense_Mutation p.Q14R 0.14 tolerated(0.46) possibly_damaging(0.542) TCGA-QH-A65R-01 17 27448160 27448160 C T MYO18A Missense_Mutation p.A481T 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-QH-A65R-01 17 38859836 38859836 C T KRT24 Missense_Mutation p.G37D 0.42 deleterious(0.01) unknown(0) TCGA-QH-A65R-01 17 40441527 40441527 A G STAT5A Missense_Mutation p.Y33C 0.10 tolerated(0.07) probably_damaging(0.994) TCGA-QH-A65R-01 17 65941667 65941667 C T BPTF Silent p.P2281P 0.45 TCGA-QH-A65R-01 17 79514217 79514217 C T C17orf70 Missense_Mutation p.V631I 0.33 tolerated(0.34) benign(0.016) TCGA-QH-A65R-01 17 8159859 8159859 A T PFAS Missense_Mutation p.E280V 0.05 tolerated(0.25) benign(0.027) TCGA-QH-A65R-01 19 36046221 36046221 C T ATP4A Missense_Mutation p.V725I 0.10 deleterious(0) possibly_damaging(0.695) TCGA-QH-A65R-01 19 56573001 56573001 T G NLRP5 3'UTR 0.53 TCGA-QH-A65R-01 1 158226067 158226067 G A CD1A Missense_Mutation p.R200Q 0.10 tolerated(0.06) benign(0.04) TCGA-QH-A65R-01 1 202288165 202288165 C T LGR6 Silent p.L912L 0.35 TCGA-QH-A65R-01 20 45315567 45315567 T C TP53RK Missense_Mutation p.K196R 0.46 deleterious(0.01) probably_damaging(1) TCGA-QH-A65R-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A65R-01 3 111312789 111312789 C T ZBED2 Missense_Mutation p.R87H 0.35 tolerated(0.14) probably_damaging(0.966) TCGA-QH-A65R-01 3 114058216 114058216 A T ZBTB20 Missense_Mutation p.L621H 0.31 deleterious(0) probably_damaging(0.996) TCGA-QH-A65R-01 3 49323550 49323550 T A USP4 Silent p.G727G 0.40 TCGA-QH-A65R-01 4 151271293 151271293 C A LRBA Missense_Mutation p.V2416F 0.37 deleterious(0) probably_damaging(1) TCGA-QH-A65R-01 4 38800242 38800242 G T TLR1 Missense_Mutation p.L71M 0.16 deleterious(0) probably_damaging(0.975) TCGA-QH-A65R-01 4 73944453 73944453 A C ANKRD17 Silent p.T2438T 0.23 TCGA-QH-A65R-01 5 101593012 101593012 C - SLCO4C1 Frame_Shift_Del p.A426Lfs*3 0.16 TCGA-QH-A65R-01 5 34937583 34937583 A C DNAJC21 Missense_Mutation p.K197N 0.12 deleterious(0.02) benign(0.412) TCGA-QH-A65R-01 6 109765438 109765438 G A MICAL1 Missense_Mutation p.R1054C 0.40 tolerated(0.22) benign(0.013) TCGA-QH-A65R-01 6 3850195 3850195 G T FAM50B Silent p.S50S 0.06 TCGA-QH-A65R-01 8 133053772 133053772 C T OC90 Missense_Mutation p.S115N 0.40 tolerated(0.11) possibly_damaging(0.561) TCGA-QH-A65R-01 8 144942068 144942068 C T EPPK1 Missense_Mutation p.R1785H 0.06 benign(0) TCGA-QH-A65R-01 8 97321825 97321825 G A PTDSS1 Missense_Mutation p.V350I 0.41 tolerated(0.05) probably_damaging(0.999) TCGA-QH-A65R-01 9 117266884 117266884 G A DFNB31 Silent p.H66H 0.19 TCGA-QH-A65R-01 9 128109218 128109218 C G GAPVD1 Missense_Mutation p.T1083R 0.44 tolerated(0.47) benign(0.03) TCGA-QH-A65R-01 9 138377236 138377236 C T PPP1R26 Missense_Mutation p.R294W 0.17 deleterious(0) possibly_damaging(0.68) TCGA-QH-A65R-01 X 103267977 103267977 G A H2BFWT Missense_Mutation p.R86C 0.17 deleterious(0) possibly_damaging(0.761) TCGA-QH-A65R-01 X 118979241 118979241 A T UPF3B Missense_Mutation p.I130K 0.19 deleterious(0) probably_damaging(0.979) TCGA-QH-A65R-01 X 119677596 119677599 TAAG - CUL4B Frame_Shift_Del p.Y431* 0.19 TCGA-QH-A65R-01 X 123517993 123517993 C T TENM1 Missense_Mutation p.R2263H 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-QH-A65R-01 X 136651129 136651129 A T ZIC3 Nonsense_Mutation p.K377* 0.03 TCGA-QH-A65S-01 10 88418275 88418275 T C OPN4 Silent p.F164F 0.28 TCGA-QH-A65S-01 11 5153482 5153482 G T OR52A5 Missense_Mutation p.P131T 0.46 deleterious(0) probably_damaging(1) TCGA-QH-A65S-01 11 69934117 69934117 A G ANO1 Missense_Mutation p.D123G 0.20 deleterious(0.01) benign(0.418) TCGA-QH-A65S-01 13 20025343 20025343 T C TPTE2 Missense_Mutation p.K255R 0.24 deleterious(0.01) benign(0.007) TCGA-QH-A65S-01 16 30998231 30998231 T G HSD3B7 Missense_Mutation p.I201S 0.22 deleterious(0) benign(0.102) TCGA-QH-A65S-01 16 89720317 89720317 A G CHMP1A Silent p.L8L 0.33 TCGA-QH-A65S-01 17 7573991 7573992 - A TP53 Frame_Shift_Ins p.E346* 0.36 TCGA-QH-A65S-01 18 43505774 43505774 T C EPG5 Missense_Mutation p.N883S 0.10 tolerated(0.51) benign(0.001) TCGA-QH-A65S-01 19 581456 581456 G A BSG Missense_Mutation p.A312T 0.40 tolerated(0.46) possibly_damaging(0.788) TCGA-QH-A65S-01 20 50314007 50314007 T G ATP9A Missense_Mutation p.K151Q 0.37 tolerated(0.29) benign(0.021) TCGA-QH-A65S-01 22 38013019 38013019 G A GGA1 Intron 0.29 TCGA-QH-A65S-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A65S-01 2 233273106 233273106 C T ALPPL2 Missense_Mutation p.H260Y 0.27 tolerated(0.17) benign(0.005) TCGA-QH-A65S-01 2 62729687 62729687 T C TMEM17 Splice_Site p.X69_splice 0.25 TCGA-QH-A65S-01 2 89037526 89037526 C T RPIA Silent p.I257I 0.33 TCGA-QH-A65S-01 3 4355172 4355172 C G SETMAR Silent p.A249A 0.18 TCGA-QH-A65S-01 3 4355411 4355411 C TG SETMAR Frame_Shift_Ins p.S329Lfs*12 0.21 TCGA-QH-A65S-01 3 58120353 58120353 G A FLNB Missense_Mutation p.V1540I 0.11 tolerated(0.53) benign(0.011) TCGA-QH-A65S-01 4 81207567 81207567 A T FGF5 Missense_Mutation p.K183I 0.29 deleterious(0.04) benign(0.446) TCGA-QH-A65S-01 5 82833311 82833311 G C VCAN Missense_Mutation p.E1497Q 0.30 deleterious(0) probably_damaging(0.992) TCGA-QH-A65S-01 6 31079466 31079466 C T C6orf15 Missense_Mutation p.G224R 0.25 deleterious(0) probably_damaging(0.991) TCGA-QH-A65S-01 X 63412447 63412447 A G AMER1 Silent p.S240S 0.23 TCGA-QH-A65S-01 X 76918915 76918915 T - ATRX Frame_Shift_Del p.K1359Sfs*16 0.24 TCGA-QH-A65S-01 X 99662601 99662601 A G PCDH19 Missense_Mutation p.V332A 0.27 deleterious(0.02) possibly_damaging(0.5) TCGA-QH-A65V-01 10 134218474 134218474 G A PWWP2B Missense_Mutation p.R157H 0.36 deleterious(0) probably_damaging(0.999) TCGA-QH-A65V-01 10 55581535 55581535 C A PCDH15 3'UTR 0.27 TCGA-QH-A65V-01 11 125770123 125770123 T C HYLS1 Missense_Mutation p.V287A 0.38 tolerated(0.08) benign(0.005) TCGA-QH-A65V-01 11 55798589 55798589 G T OR5AS1 Missense_Mutation p.G232V 0.37 deleterious(0.01) possibly_damaging(0.902) TCGA-QH-A65V-01 12 52306166 52306167 TG - ACVRL1 Intron 0.31 TCGA-QH-A65V-01 13 46619598 46619598 A G ZC3H13 Silent p.T15T 0.33 TCGA-QH-A65V-01 15 45248953 45248953 G A C15orf43 Missense_Mutation p.V13I 0.26 deleterious(0) probably_damaging(0.995) TCGA-QH-A65V-01 16 48296697 48296697 A C LONP2 Missense_Mutation p.K299T 0.31 deleterious(0.03) probably_damaging(0.965) TCGA-QH-A65V-01 17 40990763 40990763 C T PSME3 Nonsense_Mutation p.Q154* 0.37 TCGA-QH-A65V-01 17 73826535 73826535 G A UNC13D Missense_Mutation p.A913V 0.33 tolerated(0.25) benign(0.076) TCGA-QH-A65V-01 19 42799059 42799059 C T CIC Missense_Mutation p.R1515C 0.30 probably_damaging(0.973) TCGA-QH-A65V-01 19 51165085 51165085 G A SHANK1 3'UTR 0.50 TCGA-QH-A65V-01 1 120491184 120491184 G A NOTCH2 Missense_Mutation p.R869W 0.46 tolerated(0.05) probably_damaging(0.93) TCGA-QH-A65V-01 1 6155592 6155592 G T KCNAB2 Missense_Mutation p.V286L 0.52 tolerated(0.17) benign(0.003) TCGA-QH-A65V-01 20 2795740 2795740 C T C20orf141 5'UTR 0.06 TCGA-QH-A65V-01 20 44751286 44751286 A G CD40 Silent p.E98E 0.32 TCGA-QH-A65V-01 2 183866755 183866755 G A NCKAP1 Missense_Mutation p.R183C 0.09 deleterious(0) probably_damaging(1) TCGA-QH-A65V-01 2 187371527 187371527 C G ZC3H15 Missense_Mutation p.L352V 0.26 tolerated(0.38) benign(0.004) TCGA-QH-A65V-01 2 189898826 189898826 G A COL5A2 Silent p.G1490G 0.30 TCGA-QH-A65V-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A65V-01 2 44065159 44065159 C T ABCG5 Intron 0.31 TCGA-QH-A65V-01 4 151504067 151504067 T C MAB21L2 5'UTR 0.29 TCGA-QH-A65V-01 6 28540332 28540332 A G SCAND3 Missense_Mutation p.F1112L 0.33 tolerated(0.99) probably_damaging(0.956) TCGA-QH-A65V-01 7 127631024 127631024 G A SND1 Missense_Mutation p.R565Q 0.31 deleterious(0) probably_damaging(0.995) TCGA-QH-A65V-01 7 142571891 142571891 A G TRPV6 Missense_Mutation p.I486T 0.12 deleterious(0) possibly_damaging(0.899) TCGA-QH-A65V-01 7 66771046 66771046 T G STAG3L4 RNA 0.39 TCGA-QH-A65V-01 7 82578793 82578793 G A PCLO Missense_Mutation p.T3704M 0.29 unknown(0) TCGA-QH-A65V-01 8 86573391 86573391 G T REXO1L1P 3'UTR 0.12 TCGA-QH-A65V-01 9 117848575 117848575 G A TNC Missense_Mutation p.R479C 0.32 deleterious(0) probably_damaging(0.927) TCGA-QH-A65V-01 X 2670333 2670333 A - XG Frame_Shift_Del p.L7Ffs*10 0.19 TCGA-QH-A65V-01 X 38664318 38664318 A T MID1IP1 Missense_Mutation p.D40V 0.38 deleterious(0) probably_damaging(0.986) TCGA-QH-A65X-01 10 97605324 97605325 CT - ENTPD1 Frame_Shift_Del p.W275Afs*12 0.24 TCGA-QH-A65X-01 11 429619 429619 C T ANO9 Missense_Mutation p.R289H 0.25 deleterious(0) probably_damaging(0.991) TCGA-QH-A65X-01 12 14958877 14958877 G A SMCO3 3'UTR 0.37 TCGA-QH-A65X-01 12 79837981 79837981 A G SYT1 Missense_Mutation p.I353V 0.41 tolerated(0.1) possibly_damaging(0.507) TCGA-QH-A65X-01 12 8073908 8073908 C A SLC2A3 3'UTR 0.07 TCGA-QH-A65X-01 13 45517620 45517620 G A NUFIP1 Missense_Mutation p.T443M 0.24 deleterious(0.02) possibly_damaging(0.58) TCGA-QH-A65X-01 14 105818792 105818794 CTT - PACS2 In_Frame_Del p.F96del 0.52 TCGA-QH-A65X-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-QH-A65X-01 16 2747985 2747985 G A KCTD5 Missense_Mutation p.S147N 0.06 tolerated(0.47) benign(0) TCGA-QH-A65X-01 16 71668160 71668160 C A MARVELD3 Intron 0.42 TCGA-QH-A65X-01 18 61323094 61323094 C T SERPINB3 Missense_Mutation p.V324M 0.48 tolerated(0.28) benign(0.016) TCGA-QH-A65X-01 19 1005263 1005263 C T GRIN3B Missense_Mutation p.T588I 0.47 deleterious(0) probably_damaging(0.969) TCGA-QH-A65X-01 19 19458135 19458135 C T MAU2 Missense_Mutation p.A423V 0.32 tolerated(0.07) possibly_damaging(0.558) TCGA-QH-A65X-01 19 42799051 42799051 G A CIC Missense_Mutation p.R1512H 0.76 probably_damaging(0.964) TCGA-QH-A65X-01 1 161172152 161172152 C T NDUFS2 5'UTR 0.56 TCGA-QH-A65X-01 1 167095078 167095078 T C DUSP27 Missense_Mutation p.V237A 0.12 tolerated(1) benign(0.014) TCGA-QH-A65X-01 1 27057967 27057971 CCTTA - ARID1A Frame_Shift_Del p.Y560Afs*61 0.76 TCGA-QH-A65X-01 1 65272951 65272951 C A RAVER2 Missense_Mutation p.P479T 0.14 deleterious(0.01) benign(0.099) TCGA-QH-A65X-01 20 55211767 55211767 C T TFAP2C Nonsense_Mutation p.R342* 0.44 TCGA-QH-A65X-01 2 219029665 219029665 C T CXCR1 Silent p.L90L 0.05 TCGA-QH-A65X-01 2 25497832 25497832 C T DNMT3A Nonsense_Mutation p.W206* 0.57 TCGA-QH-A65X-01 2 55253414 55253416 AGG - RTN4 In_Frame_Del p.P607del 0.48 TCGA-QH-A65X-01 2 73188272 73188272 C T SFXN5 Silent p.P311P 0.19 TCGA-QH-A65X-01 3 151129236 151129236 G A MED12L Silent p.P1992P 0.38 TCGA-QH-A65X-01 5 94927146 94927146 A G ARSK Missense_Mutation p.K305E 0.11 tolerated(0.31) benign(0.02) TCGA-QH-A65X-01 6 152652511 152652511 G A SYNE1 Missense_Mutation p.L4437F 0.32 probably_damaging(0.988) TCGA-QH-A65X-01 6 75844499 75844499 C T COL12A1 Missense_Mutation p.V1823I 0.47 probably_damaging(0.997) TCGA-QH-A65X-01 8 68087489 68087491 AAC - CSPP1 Intron 0.11 TCGA-QH-A65X-01 9 8518239 8518242 ACTT - PTPRD Frame_Shift_Del p.S384Pfs*25 0.45 TCGA-QH-A65X-01 X 107288369 107288369 C T VSIG1 Silent p.F3F 0.19 TCGA-QH-A65X-01 X 130220336 130220336 C T ARHGAP36 Missense_Mutation p.R439C 0.44 deleterious(0.01) probably_damaging(0.993) TCGA-QH-A65X-01 X 57618946 57618946 G A ZXDB Silent p.P155P 0.31 TCGA-QH-A65X-01 X 77912456 77912456 G A ZCCHC5 3'UTR 0.60 TCGA-QH-A65Z-01 10 101124220 101124220 A G CNNM1 Missense_Mutation p.N692S 0.33 tolerated(0.21) possibly_damaging(0.621) TCGA-QH-A65Z-01 10 76784946 76784949 ACAA - KAT6B Frame_Shift_Del p.T1203Rfs*21 0.27 TCGA-QH-A65Z-01 12 109616926 109616926 C G ACACB Missense_Mutation p.L491V 0.36 tolerated(0.49) benign(0.019) TCGA-QH-A65Z-01 12 50036921 50036923 TCC - FMNL3 3'UTR 0.21 TCGA-QH-A65Z-01 16 24567746 24567747 - A RBBP6 Nonsense_Mutation p.Y218* 0.19 TCGA-QH-A65Z-01 16 89180794 89180794 A G ACSF3 Missense_Mutation p.K342R 0.25 tolerated(1) benign(0.009) TCGA-QH-A65Z-01 17 38188968 38188968 G T MED24 Missense_Mutation p.F290L 0.50 tolerated(0.52) benign(0.108) TCGA-QH-A65Z-01 17 66533685 66533685 C G FAM20A Missense_Mutation p.S520T 0.09 tolerated(0.21) benign(0.026) TCGA-QH-A65Z-01 17 74075804 74075805 - CC ZACN Frame_Shift_Ins p.S83Pfs*58 0.24 TCGA-QH-A65Z-01 17 80416663 80416663 C T NARF 5'UTR 0.31 TCGA-QH-A65Z-01 19 42797776 42797777 GC - CIC Frame_Shift_Del p.V1278Pfs*65 0.46 TCGA-QH-A65Z-01 19 42798989 42798990 - A CIC Frame_Shift_Ins p.A1492Sfs*22 0.11 TCGA-QH-A65Z-01 19 45895364 45895364 G A PPP1R13L Missense_Mutation p.A530V 0.17 deleterious(0.01) benign(0.001) TCGA-QH-A65Z-01 19 4891396 4891396 G C ARRDC5 Missense_Mutation p.Q231E 0.25 tolerated(0.21) benign(0.124) TCGA-QH-A65Z-01 1 186370353 186370353 A G OCLM 3'UTR 0.28 TCGA-QH-A65Z-01 1 209849305 209849305 C T G0S2 Silent p.G92G 0.32 TCGA-QH-A65Z-01 1 237957283 237957283 C T RYR2 Silent p.L4633L 0.43 TCGA-QH-A65Z-01 1 26349229 26349229 G A EXTL1 Missense_Mutation p.R31H 0.72 tolerated(0.09) unknown(0) TCGA-QH-A65Z-01 1 53553683 53553684 AG - SLC1A7 Frame_Shift_Del p.*561S 0.51 TCGA-QH-A65Z-01 20 60888747 60888747 G A LAMA5 Silent p.D2872D 0.44 TCGA-QH-A65Z-01 21 35183494 35183494 G A ITSN1 Silent p.T845T 0.28 TCGA-QH-A65Z-01 21 47361715 47361715 G T PCBP3 3'UTR 0.17 TCGA-QH-A65Z-01 22 50538030 50538030 A T MOV10L1 Missense_Mutation p.E147D 0.27 tolerated(0.07) benign(0.072) TCGA-QH-A65Z-01 2 202900715 202900715 C T FZD7 Missense_Mutation p.R449C 0.28 deleterious(0) probably_damaging(0.997) TCGA-QH-A65Z-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A65Z-01 3 172501694 172501694 C T ECT2 Missense_Mutation p.L575F 0.42 tolerated(0.05) probably_damaging(1) TCGA-QH-A65Z-01 3 41275294 41275294 T - CTNNB1 Frame_Shift_Del p.H488Tfs*19 0.29 TCGA-QH-A65Z-01 4 104510918 104510918 G A TACR3 Missense_Mutation p.S440F 0.40 deleterious(0.02) possibly_damaging(0.603) TCGA-QH-A65Z-01 4 146044497 146044497 G A ABCE1 Missense_Mutation p.R502Q 0.55 deleterious(0.02) benign(0.07) TCGA-QH-A65Z-01 4 189012473 189012473 T C TRIML2 3'UTR 0.23 TCGA-QH-A65Z-01 5 218471 218471 A G SDHA Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0.02) benign(0.067) TCGA-QH-A65Z-01 5 34950354 34950354 A G DNAJC21 Missense_Mutation p.D467G 0.06 tolerated(0.07) benign(0.005) TCGA-QH-A65Z-01 6 64423124 64423124 C G PHF3 Silent p.G1880G 0.07 TCGA-QH-A65Z-01 7 107314667 107314667 C T SLC26A4 Silent p.D158D 0.06 TCGA-QH-A65Z-01 8 8234817 8234819 TCA - SGK223 In_Frame_Del p.M367del 0.44 TCGA-QH-A65Z-01 9 113194246 113194246 A G SVEP1 Missense_Mutation p.Y1768H 0.30 probably_damaging(1) TCGA-QH-A65Z-01 9 139702131 139702133 AAG - CCDC183 In_Frame_Del p.K534del 0.32 TCGA-QH-A65Z-01 9 35736644 35736644 A C CREB3 Missense_Mutation p.Q346P 0.28 tolerated(0.05) benign(0.022) TCGA-QH-A65Z-01 X 128879232 128879232 A T XPNPEP2 Silent p.T96T 0.09 TCGA-QH-A6CS-01 10 89720803 89720804 - A PTEN Frame_Shift_Ins p.T319Nfs*6 0.23 TCGA-QH-A6CS-01 11 1856280 1856280 C T SYT8 Intron 0.11 TCGA-QH-A6CS-01 12 102433745 102433745 T C CCDC53 Silent p.T112T 0.14 TCGA-QH-A6CS-01 15 28478677 28478677 C T HERC2 Missense_Mutation p.G1461D 0.14 benign(0.024) TCGA-QH-A6CS-01 17 29652974 29652974 T - NF1 Frame_Shift_Del p.L1659Sfs*39 0.18 TCGA-QH-A6CS-01 17 74071243 74071243 C T GALR2 Silent p.F93F 0.09 TCGA-QH-A6CS-01 19 51190015 51190015 T C SHANK1 Missense_Mutation p.Y815C 0.06 probably_damaging(0.926) TCGA-QH-A6CS-01 1 99380375 99380375 T C LPPR5 Silent p.V300V 0.06 TCGA-QH-A6CS-01 20 49446838 49446838 T A BCAS4 Missense_Mutation p.I92N 0.13 deleterious(0) probably_damaging(0.994) TCGA-QH-A6CS-01 20 50776664 50776664 G A ZFP64 Missense_Mutation p.T254M 0.17 deleterious(0) probably_damaging(0.993) TCGA-QH-A6CS-01 2 176804298 176804298 C A KIAA1715 Missense_Mutation p.G265V 0.11 deleterious(0) probably_damaging(0.999) TCGA-QH-A6CS-01 2 179477176 179477176 G A TTN Silent p.D16692D 0.09 TCGA-QH-A6CS-01 3 136729071 136729071 C T IL20RB 3'UTR 0.15 TCGA-QH-A6CS-01 4 153244092 153244092 G A FBXW7 Missense_Mutation p.R689W 0.15 deleterious(0) probably_damaging(0.999) TCGA-QH-A6CS-01 4 177113947 177113947 C A SPATA4 Missense_Mutation p.Q173H 0.17 deleterious(0) probably_damaging(1) TCGA-QH-A6CS-01 4 40818255 40818255 C A APBB2 Missense_Mutation p.V712L 0.16 tolerated(0.17) probably_damaging(0.992) TCGA-QH-A6CS-01 5 140215321 140215321 C T PCDHA7 Silent p.N451N 0.14 TCGA-QH-A6CS-01 5 170159832 170159832 A G KCNIP1 Missense_Mutation p.Y166C 0.12 deleterious(0) probably_damaging(1) TCGA-QH-A6CS-01 5 67591287 67591287 C T PIK3R1 Silent p.N595N 0.07 TCGA-QH-A6CS-01 5 79945214 79945214 T C DHFR Missense_Mutation p.E79G 0.12 deleterious(0.03) benign(0.002) TCGA-QH-A6CS-01 6 129785592 129785592 G T LAMA2 Missense_Mutation p.D2384Y 0.08 deleterious(0.02) probably_damaging(1) TCGA-QH-A6CS-01 7 6094277 6094277 G T EIF2AK1 Missense_Mutation p.F59L 0.15 deleterious(0.01) possibly_damaging(0.844) TCGA-QH-A6CS-01 7 99565785 99565785 G A AZGP1 Silent p.D202D 0.11 TCGA-QH-A6CS-01 8 117783984 117783984 A G UTP23 Missense_Mutation p.Q218R 0.11 tolerated(0.3) benign(0.02) TCGA-QH-A6CS-01 8 98943235 98943235 G A MATN2 Missense_Mutation p.R66H 0.07 deleterious(0) probably_damaging(0.998) TCGA-QH-A6CS-01 9 123875999 123875999 G A CNTRL Missense_Mutation p.A448T 0.19 benign(0.005) TCGA-QH-A6CS-01 X 154130442 154130442 C T F8 Missense_Mutation p.G2000D 0.40 deleterious(0) probably_damaging(1) TCGA-QH-A6CU-01 11 59630180 59630180 G A TCN1 Missense_Mutation p.S92L 0.35 deleterious(0) probably_damaging(1) TCGA-QH-A6CU-01 12 63543874 63543874 C T AVPR1A Missense_Mutation p.R248H 0.36 deleterious(0) probably_damaging(0.973) TCGA-QH-A6CU-01 15 89400909 89400909 G A ACAN Missense_Mutation p.S1698N 0.21 tolerated(0.25) benign(0.05) TCGA-QH-A6CU-01 16 84872264 84872264 G A CRISPLD2 Missense_Mutation p.D55N 0.44 deleterious(0) probably_damaging(1) TCGA-QH-A6CU-01 17 38324149 38324149 G A CASC3 Silent p.P566P 0.37 TCGA-QH-A6CU-01 19 3527700 3527700 C T FZR1 Missense_Mutation p.A181V 0.31 deleterious(0) possibly_damaging(0.866) TCGA-QH-A6CU-01 1 46752046 46752046 G A LRRC41 Silent p.S161S 0.05 TCGA-QH-A6CU-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A6CU-01 3 64547306 64547306 C A ADAMTS9 Missense_Mutation p.C1549F 0.29 deleterious(0) probably_damaging(1) TCGA-QH-A6CU-01 5 180166535 180166535 T A OR2Y1 Missense_Mutation p.H175L 0.09 deleterious(0) probably_damaging(1) TCGA-QH-A6CU-01 6 7232039 7232039 G A RREB1 Missense_Mutation p.R1236Q 0.34 deleterious(0.01) possibly_damaging(0.616) TCGA-QH-A6CU-01 8 121528321 121528321 A - MTBP Frame_Shift_Del p.D713Ifs*22 0.22 TCGA-QH-A6CU-01 8 22273317 22273317 G A SLC39A14 Silent p.S262S 0.09 TCGA-QH-A6CU-01 9 21166376 21166376 A T IFNA21 Missense_Mutation p.V79D 0.32 deleterious(0) probably_damaging(0.944) TCGA-QH-A6CU-01 X 153222852 153222852 C A HCFC1 Missense_Mutation p.V756F 0.32 deleterious(0) probably_damaging(0.995) TCGA-QH-A6CU-01 X 84362660 84362660 G A SATL1 Nonsense_Mutation p.R439* 0.04 TCGA-QH-A6CV-01 10 105037228 105037228 A G INA Missense_Mutation p.Y87C 0.25 deleterious(0) probably_damaging(0.962) TCGA-QH-A6CV-01 10 97376325 97376325 C T ALDH18A1 Missense_Mutation p.G505E 0.36 deleterious(0) probably_damaging(1) TCGA-QH-A6CV-01 11 130343448 130343448 G A ADAMTS15 Missense_Mutation p.R862Q 0.40 deleterious(0) probably_damaging(1) TCGA-QH-A6CV-01 11 18309134 18309134 C T HPS5 Missense_Mutation p.E889K 0.25 tolerated(0.12) benign(0.039) TCGA-QH-A6CV-01 11 4566788 4566788 A C OR52M1 Missense_Mutation p.D123A 0.48 deleterious(0) probably_damaging(0.999) TCGA-QH-A6CV-01 11 5080741 5080741 G A OR52E2 Silent p.I39I 0.14 TCGA-QH-A6CV-01 11 94704160 94704160 G C CWC15 Missense_Mutation p.A105G 0.07 tolerated(0.07) possibly_damaging(0.866) TCGA-QH-A6CV-01 12 5603421 5603421 G A NTF3 Missense_Mutation p.R27H 0.06 tolerated(0.5) probably_damaging(0.964) TCGA-QH-A6CV-01 12 7526068 7526068 C T CD163L1 Missense_Mutation p.S1193N 0.22 tolerated(1) benign(0.042) TCGA-QH-A6CV-01 12 9760369 9760369 G T KLRB1 Missense_Mutation p.P23T 0.10 deleterious(0.01) possibly_damaging(0.656) TCGA-QH-A6CV-01 13 113819403 113819403 G A PROZ Missense_Mutation p.R203H 0.13 tolerated(0.12) benign(0) TCGA-QH-A6CV-01 14 20444015 20444015 G A OR4K15 Missense_Mutation p.R113H 0.22 tolerated(1) benign(0) TCGA-QH-A6CV-01 15 28259949 28259949 C T OCA2 Silent p.A339A 0.31 TCGA-QH-A6CV-01 15 79310181 79310181 C T RASGRF1 Silent p.P558P 0.35 TCGA-QH-A6CV-01 16 57238591 57238591 C T RSPRY1 Silent p.A7A 0.16 TCGA-QH-A6CV-01 17 27959167 27959167 C T SSH2 Silent p.R988R 0.20 TCGA-QH-A6CV-01 17 35641873 35641873 T C ACACA Splice_Site p.X113_splice 0.14 TCGA-QH-A6CV-01 17 39506828 39506828 G A KRT33A Silent p.N64N 0.04 TCGA-QH-A6CV-01 17 4798523 4798523 G A MINK1 Missense_Mutation p.C1024Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-QH-A6CV-01 17 4937616 4937616 C T SLC52A1 Silent p.A56A 0.10 TCGA-QH-A6CV-01 18 61234092 61234092 G A SERPINB12 Missense_Mutation p.G356S 0.25 deleterious(0) probably_damaging(1) TCGA-QH-A6CV-01 18 67817253 67817253 C T RTTN Nonsense_Mutation p.W709* 0.11 TCGA-QH-A6CV-01 19 12977470 12977470 G T MAST1 Missense_Mutation p.R678L 0.44 deleterious(0) possibly_damaging(0.66) TCGA-QH-A6CV-01 19 19654989 19654989 C T CILP2 Silent p.A545A 0.16 TCGA-QH-A6CV-01 19 22171640 22171640 C T ZNF208 Silent p.Q25Q 0.03 TCGA-QH-A6CV-01 19 3578786 3578786 C T HMG20B 3'UTR 0.38 TCGA-QH-A6CV-01 19 48197800 48197800 C T GLTSCR1 Silent p.S904S 0.41 TCGA-QH-A6CV-01 19 49636260 49636260 G A PPFIA3 Silent p.A294A 0.15 TCGA-QH-A6CV-01 19 50455562 50455562 C T SIGLEC11 Missense_Mutation p.V581I 0.10 tolerated(0.99) benign(0.001) TCGA-QH-A6CV-01 19 7585112 7585112 C T ZNF358 Silent p.F328F 0.53 TCGA-QH-A6CV-01 19 8842045 8842045 G A OR2Z1 Missense_Mutation p.G219S 0.22 tolerated(0.79) benign(0.065) TCGA-QH-A6CV-01 1 156213587 156213587 C T PAQR6 3'UTR 0.30 TCGA-QH-A6CV-01 1 159284152 159284152 T A OR10J3 Missense_Mutation p.T100S 0.32 deleterious(0.03) benign(0.045) TCGA-QH-A6CV-01 1 228437713 228437713 C T OBSCN Nonsense_Mutation p.Q1453* 0.04 TCGA-QH-A6CV-01 1 233160996 233160996 G A PCNXL2 Nonsense_Mutation p.Q1501* 0.10 TCGA-QH-A6CV-01 1 248551726 248551726 G T OR2T6 Missense_Mutation p.V273F 0.32 deleterious(0.02) possibly_damaging(0.649) TCGA-QH-A6CV-01 1 54060262 54060262 C T GLIS1 Missense_Mutation p.R105Q 0.08 deleterious(0.04) benign(0.01) TCGA-QH-A6CV-01 20 35060649 35060649 G A DLGAP4 Missense_Mutation p.G177S 0.06 tolerated(0.81) benign(0.003) TCGA-QH-A6CV-01 20 49626567 49626567 G A KCNG1 Silent p.N103N 0.14 TCGA-QH-A6CV-01 21 43838610 43838610 C A UBASH3A Missense_Mutation p.A313D 0.14 deleterious(0.01) possibly_damaging(0.868) TCGA-QH-A6CV-01 22 32479071 32479071 G A SLC5A1 Silent p.A198A 0.71 TCGA-QH-A6CV-01 22 37266498 37266498 C T NCF4 Silent p.D128D 0.72 TCGA-QH-A6CV-01 22 50480124 50480124 C T TTLL8 Silent p.T288T 0.60 TCGA-QH-A6CV-01 2 192251949 192251949 G A MYO1B Splice_Site p.X519_splice 0.33 TCGA-QH-A6CV-01 2 212652796 212652796 T C ERBB4 Silent p.P170P 0.48 TCGA-QH-A6CV-01 2 24307151 24307151 A G TP53I3 Missense_Mutation p.Y16H 0.16 tolerated(0.1) benign(0.015) TCGA-QH-A6CV-01 2 3517685 3517685 G T ADI1 Nonsense_Mutation p.Y61* 0.10 TCGA-QH-A6CV-01 2 65473766 65473766 G A ACTR2 Missense_Mutation p.D95N 0.19 tolerated(0.18) benign(0.028) TCGA-QH-A6CV-01 2 90458459 90458459 G A CH17-132F21.1 Silent p.A45A 0.26 TCGA-QH-A6CV-01 3 194080647 194080647 G A LRRC15 Missense_Mutation p.R382C 0.38 tolerated(0.16) possibly_damaging(0.828) TCGA-QH-A6CV-01 4 113461096 113461096 C G C4orf21 Missense_Mutation p.R2032T 0.40 deleterious(0) probably_damaging(0.998) TCGA-QH-A6CV-01 4 159566103 159566103 T G RXFP1 Silent p.V386V 0.25 TCGA-QH-A6CV-01 5 131409549 131409549 T G CSF2 Silent p.T11T 0.11 TCGA-QH-A6CV-01 5 135601935 135601935 C T TRPC7 Missense_Mutation p.E440K 0.07 deleterious(0) possibly_damaging(0.634) TCGA-QH-A6CV-01 5 142500615 142500615 C T ARHGAP26 Missense_Mutation p.P534L 0.10 deleterious(0) probably_damaging(0.929) TCGA-QH-A6CV-01 5 17354535 17354535 C T CTD-2139B15.2 RNA 0.11 TCGA-QH-A6CV-01 5 178030707 178030707 G A CLK4 Nonsense_Mutation p.R453* 0.29 TCGA-QH-A6CV-01 5 180056400 180056400 G A FLT4 Nonsense_Mutation p.R282* 0.12 TCGA-QH-A6CV-01 5 7900165 7900165 G A MTRR Nonsense_Mutation p.W724* 0.05 TCGA-QH-A6CV-01 6 13642747 13642747 C T RANBP9 Missense_Mutation p.V397I 0.31 tolerated(0.62) probably_damaging(0.972) TCGA-QH-A6CV-01 6 33663364 33663364 C T SBP1 Silent p.A37A 0.21 TCGA-QH-A6CV-01 6 51656142 51656142 G A PKHD1 Missense_Mutation p.P2778S 0.35 deleterious(0.02) probably_damaging(1) TCGA-QH-A6CV-01 6 85470024 85470024 T C TBX18 Missense_Mutation p.Q183R 0.25 tolerated(0.09) probably_damaging(0.982) TCGA-QH-A6CV-01 7 11452289 11452289 C T THSD7A Missense_Mutation p.V1226I 0.08 tolerated(0.64) benign(0.126) TCGA-QH-A6CV-01 7 126173225 126173225 C T GRM8 Silent p.R737R 0.17 TCGA-QH-A6CV-01 7 140374051 140374051 C T ADCK2 Silent p.S307S 0.13 TCGA-QH-A6CV-01 7 150324695 150324695 C T GIMAP6 3'UTR 0.22 TCGA-QH-A6CV-01 7 86469169 86469169 T C GRM3 Missense_Mutation p.I780T 0.03 deleterious(0) probably_damaging(0.981) TCGA-QH-A6CV-01 7 944779 944779 C G ADAP1 Missense_Mutation p.G140A 0.13 deleterious(0.02) probably_damaging(0.937) TCGA-QH-A6CV-01 8 22006354 22006354 G A LGI3 Silent p.D322D 0.48 TCGA-QH-A6CV-01 8 30854163 30854163 A T PURG Nonsense_Mutation p.C305* 0.22 TCGA-QH-A6CV-01 8 53596200 53596200 G A RB1CC1 Missense_Mutation p.S93L 0.18 tolerated(0.08) probably_damaging(0.99) TCGA-QH-A6CV-01 8 8175831 8175831 C T SGK223 Missense_Mutation p.D1352N 0.45 probably_damaging(0.985) TCGA-QH-A6CV-01 9 100963794 100963794 C A TBC1D2 Silent p.R808R 0.17 TCGA-QH-A6CV-01 9 125330260 125330260 C T OR1L8 Missense_Mutation p.R166H 0.21 tolerated(0.16) benign(0.015) TCGA-QH-A6CV-01 X 132162098 132162098 G A USP26 Missense_Mutation p.R51W 0.19 deleterious(0) benign(0.28) TCGA-QH-A6CV-01 X 88008525 88008525 A C CPXCR1 Missense_Mutation p.D37A 0.64 deleterious(0) probably_damaging(0.932) TCGA-QH-A6CW-01 11 124190082 124190082 T G OR8D2 Silent p.S4S 0.12 TCGA-QH-A6CW-01 11 47594890 47594890 T - KBTBD4 Frame_Shift_Del p.E402Rfs*27 0.08 TCGA-QH-A6CW-01 12 102590594 102590597 TAAT - PARPBP 3'Flank 0.27 TCGA-QH-A6CW-01 12 6634761 6634761 G A NCAPD2 Missense_Mutation p.V743M 0.10 tolerated(0.06) benign(0.017) TCGA-QH-A6CW-01 12 7045601 7045603 TCC - ATN1 In_Frame_Del p.S395del 0.13 TCGA-QH-A6CW-01 13 52524503 52524503 C T ATP7B Missense_Mutation p.R827Q 0.09 deleterious(0.02) benign(0.388) TCGA-QH-A6CW-01 14 107013199 107013199 C A IGHV3-49 Missense_Mutation p.Q32H 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.815) TCGA-QH-A6CW-01 14 23894938 23894938 A G MYH7 Missense_Mutation p.I751T 0.38 deleterious(0.02) probably_damaging(0.971) TCGA-QH-A6CW-01 15 90167942 90167942 C T TICRR Silent p.L1467L 0.45 TCGA-QH-A6CW-01 16 66946006 66946006 A C CDH16 Missense_Mutation p.V529G 0.40 deleterious(0) possibly_damaging(0.868) TCGA-QH-A6CW-01 16 84005688 84005688 G C NECAB2 Intron 0.50 TCGA-QH-A6CW-01 17 28960234 28960234 T C LRRC37BP1 RNA 0.33 TCGA-QH-A6CW-01 17 7578535 7578535 T C TP53 Missense_Mutation p.K132R 0.84 deleterious(0.01) probably_damaging(1) TCGA-QH-A6CW-01 18 44560214 44560214 G A TCEB3B Silent p.Y474Y 0.05 TCGA-QH-A6CW-01 18 60645537 60645537 G A PHLPP1 Missense_Mutation p.G1343S 0.38 deleterious(0) probably_damaging(0.997) TCGA-QH-A6CW-01 19 11123693 11123693 G A SMARCA4 Missense_Mutation p.M781I 0.09 probably_damaging(0.953) TCGA-QH-A6CW-01 19 11144027 11144027 G A SMARCA4 Missense_Mutation p.R1203H 0.07 possibly_damaging(0.609) TCGA-QH-A6CW-01 19 44982041 44982041 T C ZNF180 Silent p.K219K 0.44 TCGA-QH-A6CW-01 19 47181709 47181709 A G PRKD2 Missense_Mutation p.I761T 0.37 deleterious(0) probably_damaging(0.927) TCGA-QH-A6CW-01 19 51169573 51169573 C T SHANK1 Missense_Mutation p.G1882R 0.15 unknown(0) TCGA-QH-A6CW-01 1 110128908 110128908 A G GNAI3 Missense_Mutation p.I221V 0.09 tolerated(0.11) benign(0.151) TCGA-QH-A6CW-01 1 115137092 115137092 A T DENND2C Splice_Site p.X811_splice 0.08 TCGA-QH-A6CW-01 1 117131325 117131325 T C IGSF3 Missense_Mutation p.K831E 0.45 deleterious(0.02) benign(0.386) TCGA-QH-A6CW-01 1 27059173 27059174 TC - ARID1A Frame_Shift_Del p.Q605Rfs*17 0.10 TCGA-QH-A6CW-01 1 57219575 57219575 T - C1orf168 Frame_Shift_Del p.K388Nfs*6 0.20 TCGA-QH-A6CW-01 1 85331619 85331619 T G LPAR3 Missense_Mutation p.H62P 0.42 deleterious(0) probably_damaging(0.999) TCGA-QH-A6CW-01 20 43534679 43534679 A G YWHAB Missense_Mutation p.N209S 0.32 tolerated_low_confidence(0.93) benign(0.001) TCGA-QH-A6CW-01 20 57766658 57766658 C T ZNF831 Missense_Mutation p.T195M 0.40 deleterious(0) probably_damaging(0.998) TCGA-QH-A6CW-01 22 50900706 50900706 T C SBF1 Missense_Mutation p.K775R 0.49 tolerated(0.26) benign(0.021) TCGA-QH-A6CW-01 2 201437735 201437735 A G SGOL2 Missense_Mutation p.Y889C 0.52 tolerated(0.39) benign(0.001) TCGA-QH-A6CW-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A6CW-01 3 107491781 107491781 C G BBX Missense_Mutation p.H405D 0.10 tolerated(0.59) benign(0.046) TCGA-QH-A6CW-01 3 120352005 120352005 C T HGD Missense_Mutation p.D393N 0.22 tolerated(0.08) benign(0.007) TCGA-QH-A6CW-01 3 130188154 130188154 C T COL6A5 Nonsense_Mutation p.Q2436* 0.12 TCGA-QH-A6CW-01 3 168812874 168812874 C T MECOM Silent p.G880G 0.33 TCGA-QH-A6CW-01 3 50294410 50294412 CAA - GNAI2 In_Frame_Del p.N257del 0.14 TCGA-QH-A6CW-01 3 97596432 97596432 G C CRYBG3 Missense_Mutation p.E184Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-QH-A6CW-01 4 104097192 104097193 CT - CENPE Frame_Shift_Del p.E468Vfs*2 0.14 TCGA-QH-A6CW-01 4 146058451 146058451 G C OTUD4 3'UTR 0.54 TCGA-QH-A6CW-01 4 155287481 155287481 G A DCHS2 Missense_Mutation p.P192L 0.20 tolerated(0.19) benign(0.057) TCGA-QH-A6CW-01 4 76794286 76794286 G C PPEF2 Missense_Mutation p.N500K 0.32 deleterious(0.01) benign(0.146) TCGA-QH-A6CW-01 6 4037671 4037671 T G PRPF4B Missense_Mutation p.S427A 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-QH-A6CW-01 6 47846116 47846116 G A PTCHD4 Missense_Mutation p.R822C 0.04 tolerated(0.1) benign(0.001) TCGA-QH-A6CW-01 7 48314805 48314807 TCT - ABCA13 In_Frame_Del p.S1850del 0.45 TCGA-QH-A6CW-01 8 66516636 66516636 T C ARMC1 Missense_Mutation p.Y281C 0.09 deleterious(0) probably_damaging(0.997) TCGA-QH-A6CW-01 8 73848182 73848182 G A KCNB2 Missense_Mutation p.V198M 0.42 deleterious(0.01) benign(0.042) TCGA-QH-A6CW-01 9 137801856 137801858 AGA - FCN1 In_Frame_Del p.F256del 0.17 TCGA-QH-A6CW-01 9 138713097 138713097 G A CAMSAP1 Missense_Mutation p.P1137L 0.07 deleterious(0.03) benign(0.009) TCGA-QH-A6CW-01 9 139393369 139393370 TT - NOTCH1 Frame_Shift_Del p.K2054Rfs*213 0.14 TCGA-QH-A6CW-01 9 99007648 99007648 G A HSD17B3 Silent p.Y195Y 0.35 TCGA-QH-A6CW-01 X 112048276 112048276 C G AMOT Missense_Mutation p.A559P 0.05 unknown(0) TCGA-QH-A6CW-01 X 53965658 53965658 A G PHF8 Missense_Mutation p.L1039P 0.20 deleterious(0) probably_damaging(0.998) TCGA-QH-A6CW-01 X 65486345 65486345 A G HEPH Missense_Mutation p.K1157R 0.20 tolerated(0.64) benign(0.009) TCGA-QH-A6CX-01 10 29769448 29769448 C A SVIL Intron 0.13 TCGA-QH-A6CX-01 10 89720852 89720852 C T PTEN Nonsense_Mutation p.R335* 0.14 TCGA-QH-A6CX-01 11 122817281 122817281 G A C11orf63 Silent p.Q570Q 0.18 TCGA-QH-A6CX-01 11 2192950 2192950 C T TH Missense_Mutation p.A23T 0.06 tolerated_low_confidence(0.17) benign(0.021) TCGA-QH-A6CX-01 11 57322047 57322047 G A UBE2L6 Missense_Mutation p.P58L 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-QH-A6CX-01 11 65273557 65273557 T C MALAT1 RNA 0.07 TCGA-QH-A6CX-01 11 840272 840272 C T POLR2L 3'UTR 0.13 TCGA-QH-A6CX-01 12 10332177 10332177 G A TMEM52B 5'UTR 0.20 TCGA-QH-A6CX-01 12 114374833 114374833 C T RBM19 Missense_Mutation p.D683N 0.19 tolerated(0.17) benign(0.004) TCGA-QH-A6CX-01 15 85476483 85476483 G A SLC28A1 Silent p.E397E 0.12 TCGA-QH-A6CX-01 15 99486176 99486176 A G IGF1R Missense_Mutation p.Y1161C 0.21 deleterious(0) probably_damaging(1) TCGA-QH-A6CX-01 16 74712848 74712848 G A MLKL Silent p.H329H 0.19 TCGA-QH-A6CX-01 17 29556869 29556869 C T NF1 Missense_Mutation p.T956I 0.14 tolerated(0.54) benign(0.157) TCGA-QH-A6CX-01 19 9058191 9058191 G A MUC16 Missense_Mutation p.S9752F 0.17 unknown(0) TCGA-QH-A6CX-01 1 151823573 151823573 C T THEM5 Silent p.S140S 0.13 TCGA-QH-A6CX-01 1 222838722 222838722 C A MIA3 Missense_Mutation p.P1829T 0.20 deleterious(0) possibly_damaging(0.743) TCGA-QH-A6CX-01 1 248224254 248224254 A G OR2L3 Missense_Mutation p.I91V 0.17 deleterious(0.02) benign(0.027) TCGA-QH-A6CX-01 1 55251700 55251700 G A TTC22 Nonsense_Mutation p.R326* 0.31 TCGA-QH-A6CX-01 1 75622617 75622617 G A LHX8 Missense_Mutation p.V284I 0.23 tolerated(0.32) benign(0.018) TCGA-QH-A6CX-01 21 37785365 37785365 G A CHAF1B Silent p.P415P 0.12 TCGA-QH-A6CX-01 21 45945556 45945556 G A TSPEAR Missense_Mutation p.A439V 0.13 tolerated(0.35) benign(0.025) TCGA-QH-A6CX-01 22 21133990 21133990 C T SERPIND1 Silent p.N130N 0.21 TCGA-QH-A6CX-01 2 109513512 109513512 G A EDAR Missense_Mutation p.R400C 0.20 deleterious(0) probably_damaging(0.999) TCGA-QH-A6CX-01 2 109527458 109527458 G A EDAR Silent p.I200I 0.21 TCGA-QH-A6CX-01 2 189873659 189873659 G A COL3A1 Missense_Mutation p.G1179S 0.22 unknown(0) TCGA-QH-A6CX-01 2 213872293 213872293 A C IKZF2 Missense_Mutation p.Y458D 0.16 deleterious(0) probably_damaging(0.959) TCGA-QH-A6CX-01 2 234775387 234775387 G A MSL3P1 RNA 0.25 TCGA-QH-A6CX-01 2 96789808 96789808 C T ASTL Silent p.S359S 0.13 TCGA-QH-A6CX-01 3 100585771 100585771 C T ABI3BP Missense_Mutation p.E321K 0.07 tolerated(0.1) benign(0.305) TCGA-QH-A6CX-01 3 140397391 140397391 G A TRIM42 Missense_Mutation p.R107H 0.26 deleterious(0.01) possibly_damaging(0.847) TCGA-QH-A6CX-01 3 38645309 38645309 A C SCN5A Missense_Mutation p.V595G 0.22 tolerated(0.06) possibly_damaging(0.857) TCGA-QH-A6CX-01 3 45943164 45943164 T C CCR9 Missense_Mutation p.I295T 0.23 tolerated(0.08) benign(0.035) TCGA-QH-A6CX-01 3 97868982 97868982 C A OR5H14 Nonsense_Mutation p.Y251* 0.19 TCGA-QH-A6CX-01 4 159569779 159569779 C T RXFP1 Missense_Mutation p.R629C 0.16 deleterious(0) probably_damaging(1) TCGA-QH-A6CX-01 5 140530216 140530216 T - PCDHB6 Frame_Shift_Del p.N126Kfs*14 0.18 TCGA-QH-A6CX-01 5 149313501 149313501 G A PDE6A Missense_Mutation p.R237C 0.35 deleterious(0) benign(0.432) TCGA-QH-A6CX-01 5 161324489 161324489 C T GABRA1 3'UTR 0.21 TCGA-QH-A6CX-01 5 169127065 169127065 C T DOCK2 Missense_Mutation p.R394C 0.16 deleterious(0) probably_damaging(0.962) TCGA-QH-A6CX-01 5 175717198 175717198 G A SIMC1 Intron 0.29 TCGA-QH-A6CX-01 6 117704649 117704649 G A ROS1 Missense_Mutation p.T776M 0.30 deleterious(0.04) possibly_damaging(0.906) TCGA-QH-A6CX-01 6 152722323 152722323 A G SYNE1 Silent p.L2327L 0.20 TCGA-QH-A6CX-01 6 28540855 28540855 C G SCAND3 Missense_Mutation p.L937F 0.32 deleterious(0.01) possibly_damaging(0.69) TCGA-QH-A6CX-01 6 33243984 33243984 G A RPS18 Missense_Mutation p.R108H 0.09 deleterious(0.04) possibly_damaging(0.475) TCGA-QH-A6CX-01 6 90605138 90605138 T C GJA10 Silent p.N317N 0.30 TCGA-QH-A6CX-01 7 100676024 100676024 G T MUC17 Missense_Mutation p.A443S 0.17 benign(0.072) TCGA-QH-A6CX-01 7 33644509 33644509 G C BBS9 Missense_Mutation p.E852Q 0.10 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-QH-A6CX-01 7 55223604 55223604 G T EGFR Missense_Mutation p.R324L 0.86 deleterious(0.01) possibly_damaging(0.615) TCGA-QH-A6CX-01 8 49644012 49644012 C T EFCAB1 Missense_Mutation p.G37R 0.08 tolerated(0.17) benign(0.013) TCGA-QH-A6CY-01 10 61564190 61564190 G A CCDC6 Missense_Mutation p.P365S 0.33 tolerated(0.17) probably_damaging(0.992) TCGA-QH-A6CY-01 11 117282888 117282888 C T CEP164 3'UTR 0.09 TCGA-QH-A6CY-01 11 55339695 55339695 G A OR4C16 Missense_Mutation p.R31H 0.28 deleterious(0.02) benign(0.008) TCGA-QH-A6CY-01 11 615146 615146 T G IRF7 Missense_Mutation p.K58T 0.33 deleterious(0) probably_damaging(1) TCGA-QH-A6CY-01 11 6501609 6501609 G T ARFIP2 Missense_Mutation p.P15T 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.827) TCGA-QH-A6CY-01 13 30091751 30091751 T C SLC7A1 Missense_Mutation p.K490R 0.50 tolerated(0.78) benign(0.002) TCGA-QH-A6CY-01 14 22991074 22991074 A G TRAJ22 Silent p.L20L 0.33 TCGA-QH-A6CY-01 16 85954816 85954816 C T IRF8 Silent p.F403F 0.05 TCGA-QH-A6CY-01 17 38950240 38950240 G A KRT28 Missense_Mutation p.A346V 0.05 deleterious(0.01) possibly_damaging(0.612) TCGA-QH-A6CY-01 17 73725516 73725516 C T ITGB4 Missense_Mutation p.T246M 0.28 tolerated(0.06) probably_damaging(0.999) TCGA-QH-A6CY-01 18 28992950 28992950 A G DSG4 Missense_Mutation p.K858E 0.04 deleterious(0) probably_damaging(0.999) TCGA-QH-A6CY-01 19 42799050 42799050 C A CIC Missense_Mutation p.R1512S 0.44 probably_damaging(0.931) TCGA-QH-A6CY-01 1 216680183 216680183 T C ESRRG 3'UTR 0.32 TCGA-QH-A6CY-01 1 235929502 235929502 G A LYST Missense_Mutation p.L2000F 0.32 deleterious(0) probably_damaging(0.996) TCGA-QH-A6CY-01 20 50701174 50701174 G A ZFP64 Silent p.S620S 0.36 TCGA-QH-A6CY-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A6CY-01 4 73957008 73957008 C A ANKRD17 Nonsense_Mutation p.G2113* 0.07 TCGA-QH-A6CY-01 4 8055951 8055951 C T ABLIM2 Silent p.A262A 0.26 TCGA-QH-A6CY-01 4 87696669 87696669 G A PTPN13 Missense_Mutation p.A1924T 0.16 deleterious(0) probably_damaging(0.999) TCGA-QH-A6CY-01 4 98902451 98902451 A T STPG2 Missense_Mutation p.S211T 0.27 deleterious(0.04) probably_damaging(0.974) TCGA-QH-A6CY-01 5 75967776 75967776 G T IQGAP2 Silent p.V1012V 0.53 TCGA-QH-A6CY-01 6 84366496 84366496 T C SNAP91 Missense_Mutation p.N212S 0.11 deleterious(0.02) unknown(0) TCGA-QH-A6CZ-01 10 46122443 46122443 A G ZFAND4 Silent p.G276G 0.04 TCGA-QH-A6CZ-01 11 55339921 55339921 C A OR4C16 Silent p.G106G 0.03 TCGA-QH-A6CZ-01 12 104140466 104140466 C T STAB2 Silent p.D2076D 0.08 TCGA-QH-A6CZ-01 12 52380606 52380606 A G ACVR1B Missense_Mutation p.M422V 0.24 deleterious(0) possibly_damaging(0.73) TCGA-QH-A6CZ-01 15 85461769 85461769 T G SLC28A1 Missense_Mutation p.I270M 0.46 deleterious(0.01) possibly_damaging(0.882) TCGA-QH-A6CZ-01 16 67214474 67214474 G T KIAA0895L Missense_Mutation p.P14T 0.44 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-QH-A6CZ-01 17 1640948 1640949 - G WDR81 Frame_Shift_Ins p.D1933Rfs*12 0.35 TCGA-QH-A6CZ-01 17 18874815 18874815 C T FAM83G Missense_Mutation p.E777K 0.05 tolerated(0.07) benign(0.122) TCGA-QH-A6CZ-01 17 29631826 29631826 A G EVI2B Missense_Mutation p.S268P 0.04 deleterious(0.02) possibly_damaging(0.82) TCGA-QH-A6CZ-01 17 7578505 7578505 G A TP53 Missense_Mutation p.P142L 0.07 deleterious(0.03) probably_damaging(1) TCGA-QH-A6CZ-01 18 31324832 31324832 G A ASXL3 Missense_Mutation p.E1674K 0.54 benign(0.185) TCGA-QH-A6CZ-01 18 47500793 47500793 C A MYO5B Missense_Mutation p.V417L 0.05 deleterious(0.02) benign(0.232) TCGA-QH-A6CZ-01 19 17081798 17081798 G A CPAMD8 Missense_Mutation p.R753W 0.06 deleterious(0) probably_damaging(0.988) TCGA-QH-A6CZ-01 19 18001748 18001748 C T SLC5A5 Missense_Mutation p.R569W 0.05 deleterious(0.02) benign(0.006) TCGA-QH-A6CZ-01 19 39224801 39224801 C - CAPN12 Frame_Shift_Del p.G620Afs*21 0.43 TCGA-QH-A6CZ-01 19 42791794 42791794 A T CIC Missense_Mutation p.N227I 0.79 probably_damaging(1) TCGA-QH-A6CZ-01 19 4891574 4891574 G A ARRDC5 Silent p.F171F 0.54 TCGA-QH-A6CZ-01 19 50165556 50165556 G A IRF3 Missense_Mutation p.R211W 0.08 deleterious(0) probably_damaging(0.999) TCGA-QH-A6CZ-01 1 183201823 183201823 T C LAMC2 Missense_Mutation p.V684A 0.08 tolerated(0.77) benign(0.001) TCGA-QH-A6CZ-01 1 51436140 51436140 C T CDKN2C Nonsense_Mutation p.Q34* 0.10 TCGA-QH-A6CZ-01 1 78428499 78428499 G A FUBP1 Nonsense_Mutation p.Q434* 0.11 TCGA-QH-A6CZ-01 21 40604415 40604415 T C BRWD1 Missense_Mutation p.R926G 0.08 tolerated(0.11) benign(0.004) TCGA-QH-A6CZ-01 21 47412311 47412311 G A COL6A1 Missense_Mutation p.R424Q 0.45 tolerated(0.09) unknown(0) TCGA-QH-A6CZ-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A6CZ-01 2 71655742 71655742 G C ZNF638 Missense_Mutation p.E1871Q 0.40 tolerated(0.11) possibly_damaging(0.697) TCGA-QH-A6CZ-01 2 71655779 71655779 A C ZNF638 Missense_Mutation p.E1883A 0.43 tolerated(0.29) benign(0.08) TCGA-QH-A6CZ-01 2 91843491 91843491 G T AC027612.6 RNA 0.21 TCGA-QH-A6CZ-01 3 27244027 27244027 C T NEK10 Silent p.E704E 0.31 TCGA-QH-A6CZ-01 3 52397073 52397073 C G DNAH1 Silent p.L1719L 0.37 TCGA-QH-A6CZ-01 4 17528505 17528505 C T CLRN2 Nonsense_Mutation p.R167* 0.09 TCGA-QH-A6CZ-01 4 39922020 39922020 C G PDS5A Splice_Site p.X219_splice 0.34 TCGA-QH-A6CZ-01 5 120022396 120022396 A T PRR16 Missense_Mutation p.T280S 0.10 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-QH-A6CZ-01 5 134345082 134345082 C T CATSPER3 Nonsense_Mutation p.R280* 0.06 TCGA-QH-A6CZ-01 5 140176747 140176747 C T PCDHA2 Missense_Mutation p.A733V 0.06 tolerated_low_confidence(0.06) benign(0.004) TCGA-QH-A6CZ-01 5 140869683 140869683 C T PCDHGC5 Silent p.L292L 0.34 TCGA-QH-A6CZ-01 6 169634881 169634881 G A THBS2 Silent p.C533C 0.08 TCGA-QH-A6CZ-01 6 37186212 37186212 C T TMEM217 Missense_Mutation p.E199K 0.09 tolerated_low_confidence(0.14) benign(0) TCGA-QH-A6CZ-01 6 74104567 74104567 G A DDX43 5'UTR 0.07 TCGA-QH-A6CZ-01 6 7572217 7572217 C T DSP Silent p.C682C 0.38 TCGA-QH-A6CZ-01 7 100484956 100484956 A C SRRT Missense_Mutation p.K664T 0.35 tolerated(0.18) probably_damaging(0.995) TCGA-QH-A6CZ-01 7 142573252 142573252 T C TRPV6 Missense_Mutation p.D364G 0.49 deleterious(0) probably_damaging(0.979) TCGA-QH-A6CZ-01 7 48682920 48682920 T C ABCA13 Silent p.C4958C 0.11 TCGA-QH-A6CZ-01 8 10464926 10464926 C T RP1L1 Missense_Mutation p.V2228I 0.03 unknown(0) TCGA-QH-A6CZ-01 9 104184009 104184009 A G ALDOB 3'UTR 0.40 TCGA-QH-A6CZ-01 9 71628437 71628437 C T PRKACG Missense_Mutation p.R191H 0.41 tolerated(0.16) benign(0.346) TCGA-QH-A6CZ-01 X 1413280 1413280 C T CSF2RA Missense_Mutation p.R236W 0.39 tolerated(0.1) benign(0.087) TCGA-QH-A6X3-01 10 116055722 116055722 G A AFAP1L2 3'UTR 0.71 TCGA-QH-A6X3-01 11 49179513 49179513 C T FOLH1 Missense_Mutation p.G508D 0.05 tolerated(1) benign(0.001) TCGA-QH-A6X3-01 11 55563199 55563199 A G OR5D14 Silent p.K56K 0.05 TCGA-QH-A6X3-01 11 6486802 6486804 AGA - TRIM3 In_Frame_Del p.F41del 0.10 TCGA-QH-A6X3-01 11 76903174 76903174 G A MYO7A Missense_Mutation p.A1335T 0.47 tolerated(0.19) probably_damaging(0.998) TCGA-QH-A6X3-01 12 5021170 5021170 C T KCNA1 Missense_Mutation p.T209M 0.53 deleterious(0.03) possibly_damaging(0.897) TCGA-QH-A6X3-01 13 70293517 70293517 G T KLHL1 Missense_Mutation p.L667M 0.42 tolerated(0.29) probably_damaging(0.942) TCGA-QH-A6X3-01 15 56142778 56142778 G A NEDD4 Missense_Mutation p.P784S 0.06 tolerated(0.14) probably_damaging(0.992) TCGA-QH-A6X3-01 16 69833165 69833166 CT - WWP2 Frame_Shift_Del p.S104Qfs*43 0.30 TCGA-QH-A6X3-01 17 33520255 33520255 T G SLC35G3 3'UTR 0.67 TCGA-QH-A6X3-01 17 43475409 43475409 C T ARHGAP27 Missense_Mutation p.R242Q 0.49 deleterious(0.03) benign(0.107) TCGA-QH-A6X3-01 17 7579319 7579323 GTCAC - TP53 Frame_Shift_Del p.V122Lfs*25 0.88 TCGA-QH-A6X3-01 18 3879314 3879314 C T DLGAP1 Missense_Mutation p.R252Q 0.35 deleterious(0.01) benign(0.295) TCGA-QH-A6X3-01 18 5398132 5398132 G C EPB41L3 Missense_Mutation p.S787C 0.35 deleterious(0) possibly_damaging(0.572) TCGA-QH-A6X3-01 18 5398141 5398141 G C EPB41L3 Missense_Mutation p.T784S 0.35 tolerated(0.05) benign(0.025) TCGA-QH-A6X3-01 1 158580915 158580915 A G SPTA1 3'UTR 0.29 TCGA-QH-A6X3-01 1 186136027 186136027 G A HMCN1 Missense_Mutation p.R5176H 0.43 benign(0.002) TCGA-QH-A6X3-01 21 15537704 15537704 T A LIPI Missense_Mutation p.Q268H 0.50 tolerated(0.06) benign(0.002) TCGA-QH-A6X3-01 2 101874343 101874343 G A CNOT11 Missense_Mutation p.R202H 0.42 tolerated(0.14) benign(0.088) TCGA-QH-A6X3-01 2 171262117 171262117 T C MYO3B Missense_Mutation p.F832L 0.07 deleterious(0) probably_damaging(1) TCGA-QH-A6X3-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A6X3-01 4 189060901 189060901 G A TRIML1 Silent p.P63P 0.05 TCGA-QH-A6X3-01 6 131571542 131571544 CTC - AKAP7 Intron 0.38 TCGA-QH-A6X3-01 6 136904865 136904865 G A MAP3K5 Missense_Mutation p.P1080L 0.06 tolerated(0.48) benign(0.001) TCGA-QH-A6X3-01 7 151878079 151878079 C T KMT2C Missense_Mutation p.R2289H 0.22 benign(0.001) TCGA-QH-A6X3-01 7 57522851 57522851 A G ZNF716 Missense_Mutation p.N80S 0.05 deleterious(0.04) benign(0.081) TCGA-QH-A6X3-01 8 24323222 24323222 T C ADAM7 Missense_Mutation p.F108S 0.41 deleterious(0) probably_damaging(0.995) TCGA-QH-A6X3-01 9 130294013 130294013 C G FAM129B Missense_Mutation p.D34H 0.07 deleterious(0.02) possibly_damaging(0.847) TCGA-QH-A6X3-01 X 76937611 76937615 CTTTT - ATRX Frame_Shift_Del p.K1045* 0.65 TCGA-QH-A6X4-01 10 29779937 29779937 G A SVIL Missense_Mutation p.S1344F 0.12 deleterious(0) benign(0.181) TCGA-QH-A6X4-01 10 88769470 88769470 C T RP11-96C23.10 3'Flank 0.27 TCGA-QH-A6X4-01 11 129814836 129814836 G A PRDM10 Missense_Mutation p.R198W 0.07 deleterious(0) probably_damaging(0.998) TCGA-QH-A6X4-01 11 47498502 47498502 G A CELF1 Missense_Mutation p.S326L 0.42 tolerated(0.37) possibly_damaging(0.504) TCGA-QH-A6X4-01 11 5461797 5461797 T G HBE1 Intron 0.41 TCGA-QH-A6X4-01 12 125603203 125603203 G A AACS Nonsense_Mutation p.W338* 0.42 TCGA-QH-A6X4-01 14 52985913 52985913 T C TXNDC16 Missense_Mutation p.Y164C 0.69 deleterious(0) probably_damaging(0.999) TCGA-QH-A6X4-01 18 30275430 30275430 C T KLHL14 Silent p.P385P 0.10 TCGA-QH-A6X4-01 19 57835059 57835059 A G ZNF543 Missense_Mutation p.T10A 0.73 deleterious(0.03) probably_damaging(0.939) TCGA-QH-A6X4-01 19 58018648 58018648 C A ZNF773 Missense_Mutation p.F395L 0.59 tolerated(0.78) benign(0.01) TCGA-QH-A6X4-01 19 9075528 9075528 G A MUC16 Missense_Mutation p.A3973V 0.39 unknown(0) TCGA-QH-A6X4-01 1 230903392 230903392 G C CAPN9 Missense_Mutation p.E214D 0.43 tolerated(0.34) benign(0) TCGA-QH-A6X4-01 1 26150218 26150218 G A MTFR1L Silent p.P36P 0.17 TCGA-QH-A6X4-01 1 78422268 78422271 GTTT - FUBP1 Frame_Shift_Del p.Q564Lfs*100 0.55 TCGA-QH-A6X4-01 20 29632654 29632654 A G FRG1B Missense_Mutation p.K157E 0.05 tolerated(0.51) benign(0.088) TCGA-QH-A6X4-01 20 33578596 33578596 G A MYH7B Missense_Mutation p.R720H 0.48 probably_damaging(0.999) TCGA-QH-A6X4-01 21 22710761 22710761 A G NCAM2 Silent p.Q317Q 0.33 TCGA-QH-A6X4-01 22 31535869 31535869 A G PLA2G3 Missense_Mutation p.W158R 0.44 deleterious(0) probably_damaging(1) TCGA-QH-A6X4-01 2 170506899 170506902 TCTT - CCDC173 Frame_Shift_Del p.R364Kfs*10 0.33 TCGA-QH-A6X4-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A6X4-01 2 234959502 234959502 C T SPP2 Silent p.Y24Y 0.36 TCGA-QH-A6X4-01 3 138351879 138351879 T G FAIM Silent p.T200T 0.42 TCGA-QH-A6X4-01 3 46399083 46399083 C G CCR2 Missense_Mutation p.T22S 0.37 tolerated(0.06) benign(0.04) TCGA-QH-A6X4-01 3 97869163 97869163 A G OR5H14 3'UTR 0.56 TCGA-QH-A6X4-01 4 118006581 118006581 C A TRAM1L1 5'UTR 0.70 TCGA-QH-A6X4-01 4 138452455 138452455 G C PCDH18 Missense_Mutation p.T263S 0.70 tolerated(0.09) benign(0.393) TCGA-QH-A6X4-01 5 122754074 122754074 C T CEP120 Missense_Mutation p.R62K 0.42 tolerated(0.34) possibly_damaging(0.557) TCGA-QH-A6X4-01 5 137089260 137089260 G A HNRNPA0 Missense_Mutation p.H166Y 0.44 tolerated(0.06) benign(0.282) TCGA-QH-A6X4-01 6 33650337 33650337 A G ITPR3 Missense_Mutation p.T1505A 0.37 tolerated(0.67) benign(0.001) TCGA-QH-A6X4-01 6 43109996 43109996 G A PTK7 Missense_Mutation p.S677N 0.42 tolerated(0.18) probably_damaging(0.978) TCGA-QH-A6X4-01 6 53989659 53989659 G A MLIP Missense_Mutation p.G203E 0.32 tolerated(0.27) possibly_damaging(0.65) TCGA-QH-A6X4-01 7 99453218 99453218 C T CYP3A43 Silent p.L225L 0.40 TCGA-QH-A6X4-01 9 34493301 34493301 G A DNAI1 Missense_Mutation p.R264K 0.38 tolerated(1) benign(0.001) TCGA-QH-A6X5-01 10 45938912 45938914 GGA - ALOX5 In_Frame_Del p.E502del 0.16 TCGA-QH-A6X5-01 10 5203731 5203731 C T AKR1CL1 Intron 0.27 TCGA-QH-A6X5-01 10 76781673 76781675 AGA - KAT6B In_Frame_Del p.K1020del 0.17 TCGA-QH-A6X5-01 11 66407646 66407646 A G RBM4 Intron 0.14 TCGA-QH-A6X5-01 12 48499277 48499277 G C PFKM 5'Flank 0.10 TCGA-QH-A6X5-01 14 65544747 65544747 C T MAX Missense_Mutation p.R60Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-QH-A6X5-01 14 88454498 88454498 C A GALC Silent p.G106G 0.06 TCGA-QH-A6X5-01 17 18880902 18880902 C T FAM83G Missense_Mutation p.A693T 0.29 tolerated(0.51) benign(0) TCGA-QH-A6X5-01 17 37672031 37672031 A G CDK12 Missense_Mutation p.N939S 0.10 possibly_damaging(0.487) TCGA-QH-A6X5-01 17 73487406 73487407 AG - KIAA0195 Frame_Shift_Del p.Q419Rfs*28 0.11 TCGA-QH-A6X5-01 19 42791974 42791974 C G CIC Missense_Mutation p.H260D 0.25 probably_damaging(0.999) TCGA-QH-A6X5-01 19 42797951 42797951 C - CIC Frame_Shift_Del p.P1336Rfs*3 0.12 TCGA-QH-A6X5-01 19 54782291 54782291 C T LILRB2 Missense_Mutation p.A361T 0.07 tolerated(0.1) benign(0.395) TCGA-QH-A6X5-01 1 145368516 145368516 G A NBPF10 Silent p.P3498P 0.11 TCGA-QH-A6X5-01 1 177001793 177001793 C T ASTN1 Missense_Mutation p.V222M 0.07 tolerated_low_confidence(0.2) possibly_damaging(0.759) TCGA-QH-A6X5-01 1 184686700 184686700 C G EDEM3 Missense_Mutation p.A407P 0.05 tolerated(0.06) possibly_damaging(0.877) TCGA-QH-A6X5-01 2 191064711 191064711 T C C2orf88 Missense_Mutation p.V42A 0.13 tolerated(0.55) benign(0.003) TCGA-QH-A6X5-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A6X5-01 4 100047870 100047870 T C ADH4 Silent p.V331V 0.07 TCGA-QH-A6X5-01 4 151821338 151821338 G A LRBA Missense_Mutation p.T596M 0.17 deleterious(0) possibly_damaging(0.832) TCGA-QH-A6X5-01 4 154506755 154506755 A G KIAA0922 Missense_Mutation p.M435V 0.25 tolerated(0.7) benign(0.001) TCGA-QH-A6X5-01 4 71063664 71063664 A G ODAM Silent p.P55P 0.08 TCGA-QH-A6X5-01 5 111594984 111594984 C T EPB41L4A Missense_Mutation p.R246Q 0.10 deleterious(0) possibly_damaging(0.757) TCGA-QH-A6X5-01 5 172535680 172535680 C T CREBRF Missense_Mutation p.R426W 0.06 deleterious(0) probably_damaging(0.999) TCGA-QH-A6X5-01 5 61785996 61785996 A G IPO11 Missense_Mutation p.D511G 0.13 deleterious(0.02) probably_damaging(1) TCGA-QH-A6X5-01 7 150174536 150174537 TT - GIMAP8 Frame_Shift_Del p.F556Yfs*28 0.14 TCGA-QH-A6X5-01 9 139934450 139934450 C T NPDC1 Silent p.T286T 0.05 TCGA-QH-A6X5-01 9 36170642 36170642 C T CCIN Silent p.G381G 0.05 TCGA-QH-A6X5-01 X 100400090 100400090 A G CENPI Missense_Mutation p.K535E 0.11 tolerated(1) benign(0) TCGA-QH-A6X5-01 X 106117115 106117115 T - TBC1D8B Frame_Shift_Del p.F1096Lfs*5 0.15 TCGA-QH-A6X5-01 X 14548194 14548194 A G GLRA2 Silent p.L5L 0.13 TCGA-QH-A6X5-01 X 1584769 1584769 C G P2RY8 Missense_Mutation p.G228A 0.11 tolerated(0.25) benign(0.331) TCGA-QH-A6X5-01 X 19373476 19373476 T A PDHA1 Missense_Mutation p.F243I 0.11 deleterious(0) possibly_damaging(0.876) TCGA-QH-A6X5-01 X 39931708 39931709 TT - BCOR Frame_Shift_Del p.K964Efs*11 0.14 TCGA-QH-A6X8-01 10 88753182 88753182 G A AGAP11 RNA 0.49 TCGA-QH-A6X8-01 11 134054559 134054559 T C NCAPD3 Silent p.A808A 0.45 TCGA-QH-A6X8-01 11 17156657 17156657 C T PIK3C2A Splice_Site p.X633_splice 0.77 TCGA-QH-A6X8-01 11 69465895 69465895 C T CCND1 Missense_Mutation p.R245W 0.37 deleterious(0) probably_damaging(1) TCGA-QH-A6X8-01 12 53012113 53012113 C T KRT73 Missense_Mutation p.G66R 0.34 tolerated(0.13) benign(0.03) TCGA-QH-A6X8-01 14 23898247 23898247 G A MYH7 Missense_Mutation p.R442C 0.30 deleterious(0) possibly_damaging(0.735) TCGA-QH-A6X8-01 16 20451165 20451165 A C ACSM5 Missense_Mutation p.H527P 0.22 deleterious(0.02) benign(0.002) TCGA-QH-A6X8-01 17 10397924 10397924 G A MYH1 Missense_Mutation p.R1845C 0.35 deleterious(0.02) probably_damaging(0.971) TCGA-QH-A6X8-01 17 17077304 17077304 C T MPRIP Missense_Mutation p.A835V 0.06 tolerated(0.11) possibly_damaging(0.885) TCGA-QH-A6X8-01 17 43003541 43003541 A G KIF18B Silent p.S822S 0.44 TCGA-QH-A6X8-01 17 59024689 59024689 T C BCAS3 Silent p.L399L 0.38 TCGA-QH-A6X8-01 17 7231124 7231124 G A NEURL4 Missense_Mutation p.T121M 0.33 deleterious(0.04) probably_damaging(0.909) TCGA-QH-A6X8-01 19 42791722 42791722 C T CIC Missense_Mutation p.P203L 0.51 probably_damaging(1) TCGA-QH-A6X8-01 19 9058490 9058490 G A MUC16 Silent p.P9652P 0.36 TCGA-QH-A6X8-01 1 217915374 217915374 C T SPATA17 Silent p.L151L 0.38 TCGA-QH-A6X8-01 1 22172749 22172749 C T HSPG2 Splice_Site p.X2773_splice 0.57 TCGA-QH-A6X8-01 2 108487634 108487634 A G RGPD4 Silent p.K1058K 0.03 TCGA-QH-A6X8-01 2 18765354 18765354 C A NT5C1B Missense_Mutation p.K357N 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-QH-A6X8-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A6X8-01 3 114014419 114014419 C T TIGIT Missense_Mutation p.T30M 0.06 tolerated(0.33) benign(0.017) TCGA-QH-A6X8-01 3 126708285 126708285 G A PLXNA1 Silent p.V283V 0.05 TCGA-QH-A6X8-01 5 67589623 67589634 ATATGATAGATT - PIK3R1 In_Frame_Del p.D464_Y467del 0.45 TCGA-QH-A6X8-01 6 38897333 38897333 G C DNAH8 Missense_Mutation p.S3505T 0.08 possibly_damaging(0.477) TCGA-QH-A6X8-01 6 54805863 54805863 G A FAM83B Silent p.K698K 0.33 TCGA-QH-A6X8-01 6 75899313 75899313 C G COL12A1 Missense_Mutation p.A205P 0.30 possibly_damaging(0.464) TCGA-QH-A6X8-01 6 76782213 76782213 T G IMPG1 5'UTR 0.47 TCGA-QH-A6X8-01 7 138968722 138968722 C T UBN2 Missense_Mutation p.T1024M 0.50 deleterious_low_confidence(0.04) benign(0.04) TCGA-QH-A6X8-01 7 6505724 6505724 G A KDELR2 Silent p.F194F 0.34 TCGA-QH-A6X8-01 7 71252776 71252776 C T CALN1 Missense_Mutation p.R257Q 0.61 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-QH-A6X8-01 8 11400821 11400821 G A BLK Missense_Mutation p.A30T 0.43 tolerated(0.58) benign(0.001) TCGA-QH-A6X8-01 8 90967619 90967619 T C NBN Missense_Mutation p.Q430R 0.25 tolerated(0.22) benign(0.013) TCGA-QH-A6X8-01 X 105905388 105905388 C T CXorf57 Missense_Mutation p.R708W 0.38 deleterious(0.02) probably_damaging(1) TCGA-QH-A6X8-01 X 118151572 118151572 C G LONRF3 Silent p.P733P 0.44 TCGA-QH-A6X8-01 X 130412696 130412696 G A IGSF1 Silent p.L599L 0.43 TCGA-QH-A6X8-01 X 14627180 14627180 G A GLRA2 Missense_Mutation p.M261I 0.38 tolerated(0.06) possibly_damaging(0.685) TCGA-QH-A6X8-01 X 24552177 24552177 A G PDK3 Silent p.K403K 0.24 TCGA-QH-A6X8-01 X 26212016 26212016 C T MAGEB6 Missense_Mutation p.T18I 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-QH-A6X8-01 X 62570699 62570699 A T SPIN4 5'UTR 0.34 TCGA-QH-A6X8-01 X 86069792 86069792 C G DACH2 Missense_Mutation p.L547V 0.23 deleterious(0.04) probably_damaging(0.931) TCGA-QH-A6X9-01 11 117282521 117282521 C T CEP164 Missense_Mutation p.R1392W 0.05 deleterious(0) probably_damaging(0.993) TCGA-QH-A6X9-01 11 55890587 55890587 G T OR8H3 Nonsense_Mutation p.G247* 0.42 TCGA-QH-A6X9-01 11 66243323 66243323 C T PELI3 Silent p.V365V 0.48 TCGA-QH-A6X9-01 11 7669667 7669667 T C PPFIBP2 Missense_Mutation p.W566R 0.06 deleterious(0) probably_damaging(1) TCGA-QH-A6X9-01 11 92538511 92538511 A T FAT3 Missense_Mutation p.D3030V 0.29 benign(0.439) TCGA-QH-A6X9-01 12 109675033 109675033 C T ACACB Missense_Mutation p.R1504W 0.33 deleterious(0) probably_damaging(1) TCGA-QH-A6X9-01 12 7288509 7288548 GGAGATTCAGGTGAAGCCCACCTGTAAACCCAGCTGGCAA - CLSTN3 Frame_Shift_Del 0.39 TCGA-QH-A6X9-01 13 108882243 108882243 C T ABHD13 Missense_Mutation p.A226V 0.13 deleterious(0) probably_damaging(0.995) TCGA-QH-A6X9-01 14 20345046 20345046 C T OR4K2 Missense_Mutation p.A207V 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-QH-A6X9-01 14 21109290 21109290 C A OR6S1 Silent p.L187L 0.43 TCGA-QH-A6X9-01 14 66096323 66096323 A T FUT8 Missense_Mutation p.Q199L 0.34 deleterious(0) probably_damaging(0.986) TCGA-QH-A6X9-01 15 31294434 31294434 G A TRPM1 Missense_Mutation p.T1507M 0.08 deleterious_low_confidence(0.02) benign(0.346) TCGA-QH-A6X9-01 17 10352347 10352347 C T MYH4 Missense_Mutation p.R1400H 0.32 deleterious(0.02) benign(0.179) TCGA-QH-A6X9-01 17 3101424 3101424 C T OR1A2 Silent p.G204G 0.79 TCGA-QH-A6X9-01 17 39673193 39673193 C T KRT15 Missense_Mutation p.R202H 0.09 tolerated(0.06) benign(0.079) TCGA-QH-A6X9-01 17 42335371 42335371 G T SLC4A1 Missense_Mutation p.T422N 0.53 deleterious(0) probably_damaging(0.998) TCGA-QH-A6X9-01 17 7094029 7094030 AG - DLG4 Frame_Shift_Del p.*768I 0.29 TCGA-QH-A6X9-01 17 7578460 7578460 A T TP53 Missense_Mutation p.V157D 0.81 deleterious(0) probably_damaging(1) TCGA-QH-A6X9-01 18 55238765 55238765 C T FECH Missense_Mutation p.A114T 0.07 deleterious(0) possibly_damaging(0.6) TCGA-QH-A6X9-01 19 16268157 16268157 G A HSH2D 3'Flank 0.33 TCGA-QH-A6X9-01 19 17653073 17653073 C T FAM129C Silent p.L464L 0.43 TCGA-QH-A6X9-01 19 2273072 2273072 T C OAZ1 Missense_Mutation p.F218L 0.45 tolerated(1) benign(0.007) TCGA-QH-A6X9-01 19 46274858 46274858 C A DMPK Missense_Mutation p.R533L 0.25 deleterious(0.03) possibly_damaging(0.564) TCGA-QH-A6X9-01 19 51961277 51961277 T C SIGLEC8 Missense_Mutation p.Y122C 0.66 deleterious(0) probably_damaging(0.974) TCGA-QH-A6X9-01 19 53958524 53958524 C T ZNF761 RNA 0.62 TCGA-QH-A6X9-01 1 109773620 109773620 G A SARS Missense_Mutation p.G190R 0.51 deleterious(0) probably_damaging(1) TCGA-QH-A6X9-01 1 155584526 155584526 C T MSTO1 3'UTR 0.27 TCGA-QH-A6X9-01 1 186014932 186014932 A G HMCN1 Silent p.K2139K 0.07 TCGA-QH-A6X9-01 1 248224013 248224013 T C OR2L3 Silent p.D10D 0.07 TCGA-QH-A6X9-01 1 28206168 28206168 C T THEMIS2 Silent p.P83P 0.14 TCGA-QH-A6X9-01 1 44877747 44877747 G A RNF220 5'UTR 0.20 TCGA-QH-A6X9-01 22 24466846 24466846 G A CABIN1 Silent p.E776E 0.09 TCGA-QH-A6X9-01 22 24621346 24621346 C A GGT5 Missense_Mutation p.R458M 0.43 tolerated(0.1) benign(0.153) TCGA-QH-A6X9-01 22 40761013 40761013 G A ADSL Missense_Mutation p.D441N 0.05 tolerated(0.06) benign(0.007) TCGA-QH-A6X9-01 2 102955415 102955415 G C IL1RL1 Missense_Mutation p.Q60H 0.29 deleterious(0.02) benign(0.16) TCGA-QH-A6X9-01 2 179590358 179590358 G C TTN Missense_Mutation p.S6858C 0.33 TCGA-QH-A6X9-01 2 206628528 206628528 C G NRP2 Silent p.G725G 0.09 TCGA-QH-A6X9-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A6X9-01 2 219922332 219922332 C T IHH Missense_Mutation p.D134N 0.45 deleterious(0.02) probably_damaging(1) TCGA-QH-A6X9-01 2 240969527 240969527 A G OR6B2 Missense_Mutation p.L107P 0.34 deleterious(0) probably_damaging(0.996) TCGA-QH-A6X9-01 2 240981583 240981583 C T PRR21 Missense_Mutation p.A273T 0.26 tolerated_low_confidence(0.41) unknown(0) TCGA-QH-A6X9-01 3 126748762 126748762 G A PLXNA1 Missense_Mutation p.R1639H 0.06 deleterious(0.05) probably_damaging(1) TCGA-QH-A6X9-01 3 38938452 38938452 G A SCN11A Missense_Mutation p.R763C 0.13 deleterious(0) probably_damaging(1) TCGA-QH-A6X9-01 3 40574112 40574112 T G ZNF621 Missense_Mutation p.I284S 0.29 deleterious(0) benign(0.419) TCGA-QH-A6X9-01 3 57678580 57678580 C T DENND6A Missense_Mutation p.D56N 0.33 tolerated(0.13) possibly_damaging(0.811) TCGA-QH-A6X9-01 4 78080651 78080652 - A CCNG2 Frame_Shift_Ins p.M91Nfs*6 0.10 TCGA-QH-A6X9-01 6 132860099 132860099 C T TAAR9 Missense_Mutation p.A224V 0.25 deleterious(0.03) benign(0.037) TCGA-QH-A6X9-01 6 168281192 168281192 G A MLLT4 Missense_Mutation p.A298T 0.09 tolerated(0.13) possibly_damaging(0.617) TCGA-QH-A6X9-01 6 26124846 26124846 G A HIST1H2AC Missense_Mutation p.G129D 0.30 deleterious_low_confidence(0) benign(0.413) TCGA-QH-A6X9-01 6 27782965 27782965 G C HIST1H2BM Missense_Mutation p.Q48H 0.10 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-QH-A6X9-01 6 34029798 34029798 C T GRM4 Silent p.V248V 0.33 TCGA-QH-A6X9-01 6 42985952 42985952 A G KLHDC3 Missense_Mutation p.K173E 0.15 tolerated(0.55) benign(0.064) TCGA-QH-A6X9-01 6 50740543 50740543 C T TFAP2D Missense_Mutation p.A442V 0.44 tolerated_low_confidence(0.12) benign(0.004) TCGA-QH-A6X9-01 7 6045657 6045657 T G PMS2 Missense_Mutation p.E10A 0.11 tolerated_low_confidence(0.12) possibly_damaging(0.847) TCGA-QH-A6X9-01 8 125597328 125597328 C T MTSS1 Missense_Mutation p.G154R 0.37 deleterious(0) probably_damaging(0.993) TCGA-QH-A6X9-01 8 87645034 87645034 A G CNGB3 Silent p.F422F 0.55 TCGA-QH-A6X9-01 8 9760970 9760973 GAGA - LINC00599 5'Flank 0.44 TCGA-QH-A6X9-01 9 2829902 2829902 C T KIAA0020 Missense_Mutation p.V242M 0.22 deleterious(0.04) benign(0.185) TCGA-QH-A6X9-01 X 119070699 119070699 A G NKAP Intron 0.06 TCGA-QH-A6X9-01 X 129189971 129189971 C T BCORL1 Silent p.L1666L 0.38 TCGA-QH-A6X9-01 X 140993967 140993967 T A MAGEC1 Silent p.T259T 0.71 TCGA-QH-A6X9-01 X 151896315 151896315 C T MAGEA12 3'Flank 0.46 TCGA-QH-A6X9-01 X 152966342 152966342 A - BCAP31 3'UTR 0.34 TCGA-QH-A6X9-01 X 23410783 23410783 T C PTCHD1 Missense_Mutation p.L383P 0.35 deleterious(0.02) probably_damaging(0.952) TCGA-QH-A6X9-01 X 41333727 41333727 G A NYX Missense_Mutation p.D341N 0.33 deleterious(0.03) probably_damaging(0.91) TCGA-QH-A6X9-01 X 76920172 76920173 - T ATRX Frame_Shift_Ins p.R1302Kfs*7 0.58 TCGA-QH-A6XA-01 12 121221497 121221497 T C SPPL3 Silent p.R123R 0.23 TCGA-QH-A6XA-01 12 71531789 71531789 C T TSPAN8 Missense_Mutation p.A130T 0.40 tolerated(0.46) benign(0.009) TCGA-QH-A6XA-01 14 74196470 74196470 C T ELMSAN1 Silent p.P656P 0.11 TCGA-QH-A6XA-01 15 102515298 102515298 C T WASH3P 3'Flank 0.17 TCGA-QH-A6XA-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.77 deleterious(0) probably_damaging(0.998) TCGA-QH-A6XA-01 17 77042695 77042695 C T C1QTNF1 Missense_Mutation p.R72W 0.29 deleterious(0.03) benign(0.339) TCGA-QH-A6XA-01 1 24447579 24447579 G A IL22RA1 Silent p.L481L 0.33 TCGA-QH-A6XA-01 20 42788536 42788536 G A JPH2 Silent p.N297N 0.33 TCGA-QH-A6XA-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A6XA-01 3 52563192 52563192 G A NT5DC2 Missense_Mutation p.R131C 0.24 deleterious(0) probably_damaging(0.994) TCGA-QH-A6XA-01 5 94834107 94834107 G A TTC37 Missense_Mutation p.A1177V 0.10 deleterious(0.02) possibly_damaging(0.694) TCGA-QH-A6XA-01 8 42214719 42214719 G A POLB Missense_Mutation p.R152H 0.39 deleterious(0) possibly_damaging(0.635) TCGA-QH-A6XA-01 9 138441168 138441168 G A OBP2A Missense_Mutation p.E169K 0.16 tolerated(0.09) benign(0.058) TCGA-QH-A6XA-01 X 39933591 39933591 C T BCOR Silent p.S336S 0.10 TCGA-QH-A6XA-01 X 76938114 76938116 ATC TG ATRX Frame_Shift_Del p.D878Qfs*27 0.22 TCGA-QH-A6XC-01 10 52575967 52575967 G A A1CF Nonsense_Mutation p.R322* 0.48 TCGA-QH-A6XC-01 10 91486211 91486211 A G KIF20B Silent p.K681K 0.45 TCGA-QH-A6XC-01 11 24936025 24936025 A G LUZP2 Missense_Mutation p.K155E 0.42 deleterious(0.01) probably_damaging(0.987) TCGA-QH-A6XC-01 11 95569452 95569453 TG - MTMR2 Frame_Shift_Del p.I544Kfs*9 0.30 TCGA-QH-A6XC-01 12 10218182 10218182 C T CLEC9A Missense_Mutation p.T226M 0.36 tolerated(0.14) benign(0.058) TCGA-QH-A6XC-01 12 56873645 56873645 A C GLS2 Missense_Mutation p.L108R 0.24 deleterious(0) probably_damaging(0.97) TCGA-QH-A6XC-01 13 107209559 107209559 A T ARGLU1 Intron 0.35 TCGA-QH-A6XC-01 14 101498379 101498379 C T MIR543 RNA 0.37 TCGA-QH-A6XC-01 14 22564832 22564832 G A TRDV1 Missense_Mutation p.A95T 0.32 tolerated(0.07) benign(0.001) TCGA-QH-A6XC-01 14 52535572 52535572 G C NID2 Silent p.L47L 0.31 TCGA-QH-A6XC-01 15 63970180 63970180 C A HERC1 Nonsense_Mutation p.G2312* 0.37 TCGA-QH-A6XC-01 15 77474305 77474315 TCAGTGCATGA - PEAK1 5'UTR 0.30 TCGA-QH-A6XC-01 17 10248578 10248578 C T MYH13 Missense_Mutation p.E509K 0.37 deleterious(0.02) benign(0.213) TCGA-QH-A6XC-01 17 48683269 48683269 G A CACNA1G Missense_Mutation p.G1436E 0.19 deleterious(0) probably_damaging(0.996) TCGA-QH-A6XC-01 17 5035545 5035545 C T USP6 Intron 0.42 TCGA-QH-A6XC-01 17 5085347 5085348 AA - ZNF594 Frame_Shift_Del p.L735Rfs*4 0.31 TCGA-QH-A6XC-01 17 53150436 53150439 AAGT - STXBP4 Splice_Site p.X396_splice 0.49 TCGA-QH-A6XC-01 17 7710584 7710584 G A DNAH2 Missense_Mutation p.G3187S 0.38 probably_damaging(0.957) TCGA-QH-A6XC-01 17 9829985 9829985 G A GAS7 Silent p.L329L 0.32 TCGA-QH-A6XC-01 18 28598767 28598767 C T DSC3 Splice_Site p.X315_splice 0.31 TCGA-QH-A6XC-01 18 51013239 51013239 G A DCC Missense_Mutation p.C1270Y 0.34 deleterious(0.04) probably_damaging(0.926) TCGA-QH-A6XC-01 18 6985310 6985310 C A LAMA1 Missense_Mutation p.R1862S 0.39 deleterious(0.01) benign(0.341) TCGA-QH-A6XC-01 19 22018921 22018921 C T ZNF43 5'UTR 0.49 TCGA-QH-A6XC-01 19 43433784 43433784 A G PSG7 Silent p.T173T 0.30 TCGA-QH-A6XC-01 19 51453167 51453167 G A KLK5 Silent p.C93C 0.35 TCGA-QH-A6XC-01 19 57642572 57642572 C T USP29 Silent p.S843S 0.43 TCGA-QH-A6XC-01 1 150234987 150234987 C A CA14 Missense_Mutation p.Q155K 0.41 deleterious(0.02) benign(0.178) TCGA-QH-A6XC-01 1 153947216 153947216 C T JTB Missense_Mutation p.R127H 0.38 deleterious(0.05) probably_damaging(0.996) TCGA-QH-A6XC-01 1 156144877 156144877 G A SEMA4A Missense_Mutation p.G479S 0.36 deleterious(0) benign(0.266) TCGA-QH-A6XC-01 1 157648396 157648396 G T FCRL3 3'UTR 0.19 TCGA-QH-A6XC-01 1 234452366 234452366 G A SLC35F3 Missense_Mutation p.A283T 0.42 deleterious(0.01) probably_damaging(0.984) TCGA-QH-A6XC-01 1 245862232 245862232 G A KIF26B Missense_Mutation p.R2024H 0.33 deleterious(0) unknown(0) TCGA-QH-A6XC-01 1 43772556 43772556 G A TIE1 Missense_Mutation p.R177Q 0.35 tolerated(0.69) benign(0.002) TCGA-QH-A6XC-01 20 2375141 2375141 C T TGM6 Silent p.G17G 0.53 TCGA-QH-A6XC-01 22 42166858 42166858 G A MEI1 Missense_Mutation p.E813K 0.34 tolerated(0.43) probably_damaging(0.987) TCGA-QH-A6XC-01 22 47189507 47189507 G A TBC1D22A Missense_Mutation p.D77N 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-QH-A6XC-01 2 160692107 160692107 C T LY75-CD302 Missense_Mutation p.R1186H 0.42 tolerated(0.2) probably_damaging(0.984) TCGA-QH-A6XC-01 2 200790016 200790028 ATGTTATTAGTTA - C2orf69 Frame_Shift_Del p.V192Ifs*2 0.58 TCGA-QH-A6XC-01 2 27278663 27278663 G A AGBL5 Missense_Mutation p.R341H 0.36 deleterious(0.04) benign(0.059) TCGA-QH-A6XC-01 3 101370258 101370258 T G ZBTB11 Missense_Mutation p.M972L 0.30 tolerated_low_confidence(1) benign(0) TCGA-QH-A6XC-01 3 108549621 108549621 C T TRAT1 Nonsense_Mutation p.R38* 0.35 TCGA-QH-A6XC-01 4 151236737 151236737 G T LRBA Missense_Mutation p.P2568T 0.26 deleterious(0) probably_damaging(0.998) TCGA-QH-A6XC-01 4 155176691 155176691 G A DCHS2 Silent p.Y1852Y 0.41 TCGA-QH-A6XC-01 4 71024191 71024191 G A C4orf40 Silent p.S74S 0.37 TCGA-QH-A6XC-01 5 176304913 176304913 G A UNC5A Missense_Mutation p.E552K 0.29 deleterious(0.02) benign(0.301) TCGA-QH-A6XC-01 5 56208853 56208854 AG - SETD9 Frame_Shift_Del p.K161Ifs*2 0.23 TCGA-QH-A6XC-01 6 117638325 117638325 C T ROS1 Missense_Mutation p.R2039H 0.34 deleterious(0) probably_damaging(0.999) TCGA-QH-A6XC-01 6 17556688 17556688 G A CAP2 3'UTR 0.47 TCGA-QH-A6XC-01 6 40359746 40359746 C A LRFN2 Missense_Mutation p.S769I 0.35 deleterious(0.04) benign(0.261) TCGA-QH-A6XC-01 7 103138353 103138353 C T RELN Missense_Mutation p.R2955H 0.20 deleterious(0.03) probably_damaging(0.997) TCGA-QH-A6XC-01 7 103629745 103629745 G A RELN Missense_Mutation p.T20M 0.27 tolerated_low_confidence(0.22) benign(0) TCGA-QH-A6XC-01 7 140154464 140154464 G A MKRN1 Silent p.N434N 0.27 TCGA-QH-A6XC-01 7 142658889 142658889 C A KEL Missense_Mutation p.S25I 0.16 deleterious_low_confidence(0) benign(0.011) TCGA-QH-A6XC-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.91 deleterious(0) possibly_damaging(0.75) TCGA-QH-A6XC-01 7 91727520 91727520 G T AKAP9 Missense_Mutation p.G3569C 0.18 possibly_damaging(0.849) TCGA-QH-A6XC-01 7 94038132 94038132 C T COL1A2 Silent p.P263P 0.16 TCGA-QH-A6XC-01 8 10388838 10388838 C T PRSS55 Silent p.N127N 0.22 TCGA-QH-A6XC-01 9 139889191 139889191 G A CLIC3 Missense_Mutation p.T218M 0.44 deleterious(0.01) probably_damaging(0.944) TCGA-QH-A6XC-01 9 27284733 27284733 C T EQTN Silent p.S291S 0.62 TCGA-QH-A6XC-01 9 35107992 35107992 C T FAM214B Missense_Mutation p.E94K 0.34 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-QH-A6XC-01 9 77415326 77415326 C T TRPM6 Silent p.L694L 0.30 TCGA-QH-A6XC-01 X 135292027 135292027 C T FHL1 Intron 0.73 TCGA-QH-A6XC-01 X 209794 209794 G A PLCXD1 Silent p.L214L 0.37 TCGA-QH-A6XC-01 X 27765735 27765735 C G DCAF8L2 Silent p.T241T 0.73 TCGA-QH-A86X-01 12 52822482 52822482 G A KRT75 Nonsense_Mutation p.R361* 0.12 TCGA-QH-A86X-01 14 106994047 106994047 A G IGHV3-48 Missense_Mutation p.S40P 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-QH-A86X-01 16 20556560 20556560 G C ACSM2B Missense_Mutation p.N400K 0.47 tolerated(0.05) benign(0.304) TCGA-QH-A86X-01 16 705148 705148 G A WDR90 Splice_Site p.X519_splice 0.12 TCGA-QH-A86X-01 16 71689222 71689222 C T PHLPP2 Missense_Mutation p.A836T 0.05 deleterious(0.02) probably_damaging(0.931) TCGA-QH-A86X-01 18 72343568 72343568 G T ZNF407 Missense_Mutation p.C198F 0.06 deleterious(0.01) benign(0.312) TCGA-QH-A86X-01 19 42791393 42791393 G A CIC Splice_Site p.X151_splice 0.58 TCGA-QH-A86X-01 19 50185264 50185264 C T PRMT1 Missense_Mutation p.S97L 0.10 deleterious(0) possibly_damaging(0.832) TCGA-QH-A86X-01 1 145549306 145549306 C T ANKRD35 5'UTR 0.21 TCGA-QH-A86X-01 1 152659435 152659435 C T LCE2B Missense_Mutation p.P39L 0.04 tolerated_low_confidence(0.35) unknown(0) TCGA-QH-A86X-01 1 156105907 156105907 G A LMNA Silent p.E384E 0.28 TCGA-QH-A86X-01 1 201291189 201291189 G A PKP1 Silent p.E498E 0.20 TCGA-QH-A86X-01 1 78444659 78444659 G - FUBP1 Frame_Shift_Del p.S11Lfs*43 0.35 TCGA-QH-A86X-01 2 170937133 170937133 C T UBR3 Missense_Mutation p.R1830C 0.49 deleterious(0) probably_damaging(0.997) TCGA-QH-A86X-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A86X-01 2 21245798 21245798 G A APOB Silent p.H907H 0.35 TCGA-QH-A86X-01 3 10255186 10255186 G T IRAK2 Nonsense_Mutation p.G248* 0.11 TCGA-QH-A86X-01 3 164781241 164781241 C T SI Missense_Mutation p.S299N 0.23 deleterious(0) possibly_damaging(0.79) TCGA-QH-A86X-01 4 81122620 81122620 A T PRDM8 Missense_Mutation p.K132N 0.23 deleterious(0) possibly_damaging(0.879) TCGA-QH-A86X-01 5 54577289 54577289 T C DHX29 Missense_Mutation p.R674G 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-QH-A86X-01 5 74892057 74892057 A G POLK Missense_Mutation p.I513M 0.17 tolerated(0.17) benign(0.004) TCGA-QH-A86X-01 9 100459557 100459557 C T XPA Silent p.G6G 0.18 TCGA-QH-A870-01 10 104356987 104356987 G A SUFU Missense_Mutation p.E283K 0.35 tolerated(0.59) benign(0.015) TCGA-QH-A870-01 12 10312559 10312559 G A OLR1 Nonsense_Mutation p.R248* 0.37 TCGA-QH-A870-01 14 73572994 73572994 G A RBM25 Splice_Site p.X489_splice 0.32 TCGA-QH-A870-01 17 47241556 47241556 C T B4GALNT2 Silent p.T351T 0.39 TCGA-QH-A870-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.35 tolerated(0.13) possibly_damaging(0.631) TCGA-QH-A870-01 17 7577600 7577601 AG T TP53 Frame_Shift_Del p.S227* 0.21 TCGA-QH-A870-01 19 31767582 31767582 A G TSHZ3 Silent p.T1039T 0.43 TCGA-QH-A870-01 19 50099289 50099289 G A PRR12 Missense_Mutation p.R566H 0.06 possibly_damaging(0.715) TCGA-QH-A870-01 1 115488993 115488993 A G SYCP1 Silent p.R746R 0.04 TCGA-QH-A870-01 1 17735688 17735688 G A RCC2 Silent p.V489V 0.29 TCGA-QH-A870-01 20 62196717 62196717 C T HELZ2 Missense_Mutation p.G1153D 0.67 tolerated(0.2) benign(0.164) TCGA-QH-A870-01 21 19629023 19629023 G T CHODL Missense_Mutation p.G93W 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-QH-A870-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-QH-A870-01 2 219297657 219297657 C A VIL1 Missense_Mutation p.R495S 0.06 deleterious(0) benign(0.012) TCGA-QH-A870-01 2 234847747 234847747 G A TRPM8 Missense_Mutation p.A152T 0.06 deleterious(0) benign(0.176) TCGA-QH-A870-01 4 22438138 22438138 G A GPR125 Silent p.G404G 0.34 TCGA-QH-A870-01 4 47517508 47517509 TT - ATP10D Frame_Shift_Del p.F103Pfs*34 0.29 TCGA-QH-A870-01 4 71555330 71555330 C A UTP3 Silent p.S312S 0.06 TCGA-QH-A870-01 5 140503914 140503914 C G PCDHB4 Silent p.T778T 0.45 TCGA-QH-A870-01 6 11213626 11213626 C T NEDD9 Missense_Mutation p.G116E 0.40 tolerated(0.12) benign(0.161) TCGA-QH-A870-01 6 64395000 64395000 A - PHF3 Frame_Shift_Del p.I459Mfs*23 0.27 TCGA-QH-A870-01 7 72718793 72718793 C T NSUN5 Missense_Mutation p.A236T 0.06 deleterious(0) probably_damaging(0.997) TCGA-QH-A870-01 8 37556023 37556023 G A ZNF703 Missense_Mutation p.R535Q 0.50 deleterious(0.01) probably_damaging(0.992) TCGA-QH-A870-01 X 123518249 123518249 G A TENM1 Missense_Mutation p.R2178C 0.29 deleterious(0) probably_damaging(0.943) TCGA-QH-A870-01 X 123663835 123663835 T A TENM1 Splice_Site p.X884_splice 0.07 TCGA-QH-A870-01 X 76939354 76939354 G C ATRX Nonsense_Mutation p.S465* 0.36 TCGA-QH-A870-01 X 85218743 85218743 G A CHM Missense_Mutation p.P210L 0.37 tolerated(0.07) benign(0.026) TCGA-R8-A6MK-01 10 93870871 93870872 AG - CPEB3 Frame_Shift_Del p.Y512Pfs*22 0.09 TCGA-R8-A6MK-01 11 66368006 66368006 C T CCS Nonsense_Mutation p.Q159* 0.05 TCGA-R8-A6MK-01 12 111748437 111748437 G A CUX2 Silent p.S617S 0.47 TCGA-R8-A6MK-01 12 52886575 52886575 C T KRT6A Missense_Mutation p.G133E 0.47 deleterious(0.02) probably_damaging(0.963) TCGA-R8-A6MK-01 12 57589082 57589084 CTC - LRP1 In_Frame_Del p.S2780del 0.35 TCGA-R8-A6MK-01 16 1570263 1570263 T C IFT140 Missense_Mutation p.I1248V 0.44 tolerated(0.25) benign(0.032) TCGA-R8-A6MK-01 16 24582708 24582709 AA - RBBP6 Frame_Shift_Del p.L1443Vfs*8 0.21 TCGA-R8-A6MK-01 16 28909640 28909640 G A ATP2A1 Silent p.K544K 0.07 TCGA-R8-A6MK-01 16 4935555 4935557 AGG - PPL In_Frame_Del p.L1034del 0.39 TCGA-R8-A6MK-01 17 48646633 48646633 G A CACNA1G Silent p.R154R 0.05 TCGA-R8-A6MK-01 18 13884744 13884744 G A MC2R Silent p.F258F 0.49 TCGA-R8-A6MK-01 18 19995803 19995803 G A CTAGE1 Missense_Mutation p.P658S 0.03 tolerated(0.42) benign(0.044) TCGA-R8-A6MK-01 19 42793215 42793218 CAGT - CIC Frame_Shift_Del p.S370Rfs*6 0.22 TCGA-R8-A6MK-01 19 42799063 42799065 AGA - CIC In_Frame_Del p.K1517del 0.67 TCGA-R8-A6MK-01 19 58578565 58578568 GAGA - ZNF135 Frame_Shift_Del p.E263Dfs*9 0.20 TCGA-R8-A6MK-01 1 158596678 158596678 A G SPTA1 Silent p.Y1928Y 0.43 TCGA-R8-A6MK-01 1 53282304 53282304 A T ZYG11B Intron 0.62 TCGA-R8-A6MK-01 20 11898903 11898906 AAAG - BTBD3 5'UTR 0.09 TCGA-R8-A6MK-01 20 55982775 55982775 C T RBM38 Missense_Mutation p.T198M 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.556) TCGA-R8-A6MK-01 22 21385671 21385672 AT - SLC7A4 Frame_Shift_Del p.M144Vfs*10 0.23 TCGA-R8-A6MK-01 2 109383513 109383513 T C RANBP2 Missense_Mutation p.M2173T 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-R8-A6MK-01 2 162275516 162275516 C T TBR1 Silent p.F361F 0.38 TCGA-R8-A6MK-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-R8-A6MK-01 3 13670699 13670699 G A FBLN2 Missense_Mutation p.G917S 0.26 tolerated(0.21) benign(0.03) TCGA-R8-A6MK-01 3 32031030 32031030 T C ZNF860 Silent p.D153D 0.43 TCGA-R8-A6MK-01 4 143094935 143094935 T A INPP4B Silent p.S403S 0.36 TCGA-R8-A6MK-01 4 183245244 183245244 C A TENM3 Missense_Mutation p.T24K 0.11 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-R8-A6MK-01 4 3214422 3214422 G A HTT Missense_Mutation p.V2254M 0.17 possibly_damaging(0.602) TCGA-R8-A6MK-01 4 36121334 36121334 C T ARAP2 Missense_Mutation p.E1301K 0.25 deleterious(0) benign(0.403) TCGA-R8-A6MK-01 5 131893129 131893129 A G RAD50 Missense_Mutation p.N38S 0.39 deleterious(0.01) probably_damaging(0.96) TCGA-R8-A6MK-01 5 35037113 35037113 G A AGXT2 Silent p.V140V 0.10 TCGA-R8-A6MK-01 6 161143573 161143573 G A PLG Silent p.Q410Q 0.07 TCGA-R8-A6MK-01 6 27216911 27216911 G A PRSS16 Missense_Mutation p.A124T 0.11 deleterious(0) probably_damaging(0.999) TCGA-R8-A6MK-01 6 43475248 43475249 CT - LRRC73 Frame_Shift_Del p.G276Afs*37 0.13 TCGA-R8-A6MK-01 6 7576615 7576615 C T DSP Missense_Mutation p.R907C 0.45 probably_damaging(0.989) TCGA-R8-A6MK-01 7 121676713 121676713 T C PTPRZ1 Missense_Mutation p.Y1782H 0.43 deleterious(0) probably_damaging(1) TCGA-R8-A6MK-01 8 72156845 72156845 T C EYA1 Missense_Mutation p.D378G 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-R8-A6ML-01 12 93322851 93322851 C A EEA1 5'UTR 0.33 TCGA-R8-A6ML-01 15 66206129 66206129 G A MEGF11 Missense_Mutation p.R886C 0.26 tolerated(0.06) benign(0.03) TCGA-R8-A6ML-01 17 27580753 27580753 G A CRYBA1 Missense_Mutation p.M151I 0.32 deleterious(0.02) possibly_damaging(0.773) TCGA-R8-A6ML-01 17 38906799 38906799 C T KRT25 Silent p.A336A 0.39 TCGA-R8-A6ML-01 19 42795743 42795744 - G CIC Frame_Shift_Ins p.G913Wfs*18 0.45 TCGA-R8-A6ML-01 1 212798743 212798743 G A FAM71A Missense_Mutation p.R175Q 0.39 deleterious(0.03) benign(0.176) TCGA-R8-A6ML-01 1 32713189 32713189 G A FAM167B Missense_Mutation p.R56H 0.20 tolerated(0.25) benign(0) TCGA-R8-A6ML-01 21 19732164 19732164 A G TMPRSS15 Missense_Mutation p.S264P 0.36 deleterious(0) probably_damaging(0.915) TCGA-R8-A6ML-01 2 201437641 201437641 G T SGOL2 Missense_Mutation p.V858F 0.41 tolerated(0.07) benign(0.045) TCGA-R8-A6ML-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-R8-A6ML-01 2 9628441 9628441 G C IAH1 Missense_Mutation p.G244R 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.894) TCGA-R8-A6ML-01 3 113138965 113138965 C T WDR52 Missense_Mutation p.A157T 0.33 deleterious(0.01) benign(0.029) TCGA-R8-A6ML-01 3 52474396 52474396 G A SEMA3G Silent p.G380G 0.45 TCGA-R8-A6ML-01 4 165962676 165962676 G A TRIM60 3'UTR 0.33 TCGA-R8-A6ML-01 4 20569157 20569157 T C SLIT2 Missense_Mutation p.V956A 0.41 tolerated(0.32) benign(0.021) TCGA-R8-A6ML-01 5 176833045 176833045 C T F12 Missense_Mutation p.E45K 0.06 tolerated(0.12) benign(0.117) TCGA-R8-A6ML-01 5 36953806 36953816 GGGATATGCCC - NIPBL Frame_Shift_Del p.G3Afs*12 0.11 TCGA-R8-A6ML-01 6 170013708 170013708 G A WDR27 Silent p.F756F 0.45 TCGA-R8-A6ML-01 6 18121764 18121764 C T NHLRC1 Missense_Mutation p.M358I 0.41 tolerated(0.52) benign(0) TCGA-R8-A6ML-01 7 127970947 127970947 C T RBM28 Missense_Mutation p.G352R 0.34 tolerated(0.44) probably_damaging(0.986) TCGA-R8-A6ML-01 7 129856182 129856182 G A SSMEM1 Missense_Mutation p.A203T 0.45 deleterious(0) possibly_damaging(0.682) TCGA-R8-A6ML-01 X 53432432 53432432 C A SMC1A Missense_Mutation p.R635L 0.70 deleterious(0) probably_damaging(0.999) TCGA-R8-A6ML-01 X 54783902 54783902 T C ITIH6 Missense_Mutation p.I869V 0.20 deleterious(0.02) benign(0) TCGA-R8-A6MO-01 12 119909928 119909928 C T CCDC60 Silent p.A100A 0.28 TCGA-R8-A6MO-01 12 56505011 56505011 A G PA2G4 Missense_Mutation p.N328S 0.29 tolerated(0.14) benign(0.041) TCGA-R8-A6MO-01 14 106053634 106053634 C T IGHA2 Silent p.P221P 0.29 TCGA-R8-A6MO-01 14 106173865 106173865 C T IGHA1 Silent p.P234P 0.10 TCGA-R8-A6MO-01 16 24582966 24582966 G A RBBP6 Missense_Mutation p.G1527R 0.37 tolerated_low_confidence(0.14) unknown(0) TCGA-R8-A6MO-01 16 54967008 54967008 G A IRX5 Silent p.A225A 0.56 TCGA-R8-A6MO-01 17 21319252 21319252 G A KCNJ12 Missense_Mutation p.A200T 0.14 deleterious(0) probably_damaging(0.979) TCGA-R8-A6MO-01 18 67671262 67671262 G T RTTN 3'UTR 0.22 TCGA-R8-A6MO-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.58 probably_damaging(1) TCGA-R8-A6MO-01 1 150916431 150916431 A G SETDB1 Missense_Mutation p.Y304C 0.35 deleterious(0) probably_damaging(1) TCGA-R8-A6MO-01 1 156784873 156784873 C T SH2D2A Silent p.Q88Q 0.06 TCGA-R8-A6MO-01 1 237791209 237791209 G A RYR2 Missense_Mutation p.R2090Q 0.12 probably_damaging(0.999) TCGA-R8-A6MO-01 20 5927167 5927167 G A TRMT6 Silent p.F47F 0.36 TCGA-R8-A6MO-01 21 15882705 15882705 G A SAMSN1 Missense_Mutation p.P231S 0.08 deleterious(0.05) benign(0.426) TCGA-R8-A6MO-01 2 121712960 121712960 C A GLI2 Silent p.G199G 0.33 TCGA-R8-A6MO-01 2 161052897 161052897 C T ITGB6 Missense_Mutation p.C59Y 0.32 deleterious(0) probably_damaging(1) TCGA-R8-A6MO-01 2 170093674 170093674 T C LRP2 Missense_Mutation p.T1544A 0.37 benign(0.052) TCGA-R8-A6MO-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-R8-A6MO-01 2 32476399 32476399 C A NLRC4 Silent p.L178L 0.04 TCGA-R8-A6MO-01 3 100527058 100527058 G A ABI3BP Missense_Mutation p.A540V 0.35 tolerated(0.58) benign(0.248) TCGA-R8-A6MO-01 3 151164884 151164884 C T IGSF10 Missense_Mutation p.S962N 0.32 tolerated(0.1) benign(0.031) TCGA-R8-A6MO-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.32 tolerated(0.06) probably_damaging(0.998) TCGA-R8-A6MO-01 3 195516065 195516065 G A MUC4 Nonsense_Mutation p.R796* 0.30 TCGA-R8-A6MO-01 3 89457251 89457251 G A EPHA3 Missense_Mutation p.E578K 0.38 tolerated(0.08) benign(0.294) TCGA-R8-A6MO-01 4 15055831 15055831 T C CPEB2 Silent p.F817F 0.34 TCGA-R8-A6MO-01 4 153864692 153864692 A G FHDC1 Silent p.R161R 0.38 TCGA-R8-A6MO-01 4 186559269 186559269 C - SORBS2 Intron 0.31 TCGA-R8-A6MO-01 4 74853701 74853701 T G PPBP Missense_Mutation p.Q40H 0.40 deleterious(0) possibly_damaging(0.674) TCGA-R8-A6MO-01 4 7668883 7668883 C A SORCS2 Silent p.V368V 0.12 TCGA-R8-A6MO-01 4 79296998 79296998 G C FRAS1 Missense_Mutation p.G1086A 0.32 possibly_damaging(0.896) TCGA-R8-A6MO-01 5 156378598 156378598 G A TIMD4 Missense_Mutation p.P202S 0.32 tolerated(0.61) benign(0.027) TCGA-R8-A6MO-01 5 173380277 173380277 T C CPEB4 Splice_Site p.X654_splice 0.34 TCGA-R8-A6MO-01 5 38464075 38464075 G T EGFLAM Missense_Mutation p.C1014F 0.39 deleterious(0) probably_damaging(0.999) TCGA-R8-A6MO-01 6 36564571 36564571 A G SRSF3 Missense_Mutation p.K11R 0.34 tolerated(0.17) possibly_damaging(0.831) TCGA-R8-A6MO-01 7 133886296 133886296 A G LRGUK Missense_Mutation p.E604G 0.36 deleterious(0) benign(0.097) TCGA-R8-A6MO-01 7 38725296 38725296 G A FAM183B Missense_Mutation p.R104C 0.04 tolerated(0.06) benign(0.047) TCGA-R8-A6MO-01 8 17919903 17919903 A G ASAH1 Missense_Mutation p.I194T 0.33 tolerated(0.12) benign(0.06) TCGA-R8-A6MO-01 X 109931822 109931822 C A CHRDL1 Nonsense_Mutation p.E330* 0.35 TCGA-R8-A6MO-01 X 151870087 151870087 G T MAGEA6 Silent p.R259R 0.35 TCGA-R8-A6MO-01 X 152938703 152938703 C A PNCK Intron 0.33 TCGA-R8-A6MO-01 X 2748102 2748102 G A GYG2 Intron 0.24 TCGA-R8-A6MO-01 X 73063859 73063859 G A XIST RNA 0.36 TCGA-R8-A6YH-01 13 32527349 32527349 T C EEF1DP3 RNA 0.10 TCGA-R8-A6YH-01 14 93649977 93649977 C G MOAP1 Missense_Mutation p.R204T 0.07 deleterious(0) probably_damaging(0.931) TCGA-R8-A6YH-01 17 7577115 7577115 A G TP53 Missense_Mutation p.C275R 0.91 deleterious(0) probably_damaging(0.991) TCGA-R8-A6YH-01 17 76533486 76533486 C T DNAH17 Silent p.V918V 0.25 TCGA-R8-A6YH-01 18 18550345 18550345 T C ROCK1 Silent p.R928R 0.35 TCGA-R8-A6YH-01 18 71740801 71740801 G A FBXO15 Silent p.H476H 0.48 TCGA-R8-A6YH-01 19 56156055 56156055 G A ZNF581 Missense_Mutation p.G40R 0.73 tolerated(0.07) benign(0.157) TCGA-R8-A6YH-01 20 44523724 44523724 G A CTSA Missense_Mutation p.R365Q 0.44 tolerated(0.06) benign(0.158) TCGA-R8-A6YH-01 20 58467639 58467639 T C SYCP2 Silent p.G637G 0.07 TCGA-R8-A6YH-01 21 31768408 31768408 T C KRTAP13-1 Missense_Mutation p.S2P 0.83 tolerated(0.1) benign(0.248) TCGA-R8-A6YH-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-R8-A6YH-01 6 43223344 43223344 G T TTBK1 Missense_Mutation p.A233S 0.46 probably_damaging(0.976) TCGA-R8-A6YH-01 X 76920179 76920180 - C ATRX Frame_Shift_Ins p.K1300Efs*9 0.47 TCGA-R8-A6YH-01 Y 3447976 3447976 T C TGIF2LY 3'UTR 1.00 TCGA-R8-A73M-01 11 1093740 1093740 G C MUC2 Silent p.P1853P 0.31 TCGA-R8-A73M-01 11 17429999 17429999 T A ABCC8 Missense_Mutation p.E920D 0.25 tolerated(1) benign(0.001) TCGA-R8-A73M-01 12 113400550 113400550 G A OAS3 Missense_Mutation p.G643S 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-R8-A73M-01 12 52914188 52914188 C T KRT5 5'UTR 0.50 TCGA-R8-A73M-01 12 53880246 53880246 C G MAP3K12 Missense_Mutation p.K202N 0.20 tolerated(0.28) benign(0.074) TCGA-R8-A73M-01 13 26967554 26967554 A G CDK8 Missense_Mutation p.I233V 0.05 tolerated(0.08) benign(0.057) TCGA-R8-A73M-01 13 38143490 38143490 C A POSTN Missense_Mutation p.G793V 0.30 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-R8-A73M-01 14 22134124 22134124 A - OR4E2 Frame_Shift_Del p.V277Wfs*6 0.33 TCGA-R8-A73M-01 16 9014244 9014244 C G USP7 Missense_Mutation p.V195L 0.40 tolerated(0.07) possibly_damaging(0.476) TCGA-R8-A73M-01 17 3628342 3628342 C A GSG2 Missense_Mutation p.D371E 0.37 deleterious(0.02) benign(0.07) TCGA-R8-A73M-01 17 7484227 7484227 G A CD68 Silent p.S258S 0.17 TCGA-R8-A73M-01 19 42791836 42791836 T C CIC Missense_Mutation p.L241P 0.70 probably_damaging(0.999) TCGA-R8-A73M-01 19 51517935 51517935 A T KLK10 3'UTR 0.88 TCGA-R8-A73M-01 19 7132266 7132266 C A INSR Silent p.G915G 0.39 TCGA-R8-A73M-01 1 169512035 169512035 C T F5 Missense_Mutation p.V765I 0.37 tolerated(1) benign(0) TCGA-R8-A73M-01 1 178421757 178421757 A G RASAL2 Missense_Mutation p.K660R 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-R8-A73M-01 20 40102094 40102094 C G CHD6 Silent p.R844R 0.08 TCGA-R8-A73M-01 2 109370354 109370354 A G RANBP2 Missense_Mutation p.Y710C 0.44 tolerated(0.19) benign(0.003) TCGA-R8-A73M-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-R8-A73M-01 2 96799705 96799705 G A ASTL Silent p.Y112Y 0.46 TCGA-R8-A73M-01 3 113847660 113847660 G A DRD3 Missense_Mutation p.T369I 0.41 deleterious(0.01) probably_damaging(1) TCGA-R8-A73M-01 3 184094123 184094123 C T THPO 5'UTR 0.16 TCGA-R8-A73M-01 3 52430944 52430944 C T DNAH1 Missense_Mutation p.R3891W 0.48 probably_damaging(0.999) TCGA-R8-A73M-01 5 140041925 140041928 CAAC - IK 3'UTR 0.54 TCGA-R8-A73M-01 6 46660172 46660172 A G TDRD6 Missense_Mutation p.H1436R 0.05 tolerated(0.41) benign(0.002) TCGA-R8-A73M-01 6 4937890 4937890 G A CDYL Missense_Mutation p.C347Y 0.15 deleterious(0.04) probably_damaging(0.938) TCGA-R8-A73M-01 6 50740356 50740356 A G TFAP2D Splice_Site p.X380_splice 0.10 TCGA-R8-A73M-01 7 83739852 83739852 C T SEMA3A Silent p.L129L 0.12 TCGA-R8-A73M-01 9 115945062 115945062 T C FKBP15 Missense_Mutation p.H633R 0.40 deleterious(0.05) possibly_damaging(0.765) TCGA-R8-A73M-01 9 84607526 84607526 G A SPATA31D1 Missense_Mutation p.R714H 0.46 tolerated(0.14) benign(0.005) TCGA-R8-A73M-01 9 97843039 97843039 G A C9orf3 Missense_Mutation p.E766K 0.23 tolerated(0.16) benign(0.044) TCGA-R8-A73M-01 X 122757971 122757971 A G THOC2 Silent p.D1086D 0.49 TCGA-R8-A73M-01 X 129519123 129519123 G T GPR119 Missense_Mutation p.T100N 0.45 deleterious(0) benign(0.428) TCGA-R8-A73M-01 X 135431378 135431378 A T GPR112 Missense_Mutation p.Y1838F 0.12 tolerated(0.68) benign(0.007) TCGA-R8-A73M-01 X 49071867 49071867 C T CACNA1F Missense_Mutation p.V1136I 0.29 deleterious(0.01) benign(0.394) TCGA-R8-A73M-01 X 49459349 49459349 A T PAGE1 Missense_Mutation p.Y9N 0.53 deleterious(0.01) probably_damaging(0.961) TCGA-R8-A73M-01 X 99662867 99662867 G A PCDH19 Silent p.Y243Y 0.17 TCGA-RY-A83X-01 10 106602584 106602584 A G SORCS3 Missense_Mutation p.N221S 0.05 deleterious(0.01) possibly_damaging(0.802) TCGA-RY-A83X-01 10 29822350 29822350 C G SVIL Missense_Mutation p.A316P 0.24 tolerated(0.19) benign(0.029) TCGA-RY-A83X-01 11 57995753 57995753 C T OR10Q1 Missense_Mutation p.V199M 0.44 tolerated(0.1) possibly_damaging(0.532) TCGA-RY-A83X-01 12 125397211 125397211 G A UBC Silent p.S369S 0.28 TCGA-RY-A83X-01 12 52680923 52680923 C T KRT81 Missense_Mutation p.A404T 0.07 deleterious(0.02) benign(0.325) TCGA-RY-A83X-01 12 59274457 59274457 G A LRIG3 Silent p.R569R 0.32 TCGA-RY-A83X-01 12 75892394 75892394 A G KRR1 3'UTR 0.50 TCGA-RY-A83X-01 14 24787935 24787935 C T ADCY4 Silent p.P1002P 0.08 TCGA-RY-A83X-01 17 2239778 2239778 G A TSR1 5'UTR 0.06 TCGA-RY-A83X-01 17 74004207 74004207 C T EVPL Silent p.T1693T 0.40 TCGA-RY-A83X-01 19 15905218 15905218 C T OR10H5 Silent p.Y120Y 0.40 TCGA-RY-A83X-01 19 42795089 42795089 G - CIC Frame_Shift_Del p.G724Vfs*4 0.40 TCGA-RY-A83X-01 1 154574120 154574120 A C ADAR Missense_Mutation p.V333G 0.36 deleterious(0) benign(0.315) TCGA-RY-A83X-01 2 197541384 197541384 C T CCDC150 Nonsense_Mutation p.R457* 0.32 TCGA-RY-A83X-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-RY-A83X-01 2 232141451 232141451 G T ARMC9 Silent p.S479S 0.28 TCGA-RY-A83X-01 2 233897561 233897561 C T NEU2 Silent p.D60D 0.41 TCGA-RY-A83X-01 2 71658501 71658501 C T ZNF638 Missense_Mutation p.R1899C 0.39 deleterious(0) probably_damaging(0.944) TCGA-RY-A83X-01 4 152592137 152592137 G A PET112 3'UTR 0.25 TCGA-RY-A83X-01 7 100161493 100161493 T C AGFG2 Missense_Mutation p.F403S 0.43 tolerated(0.05) possibly_damaging(0.649) TCGA-RY-A83X-01 7 23381773 23381773 G A IGF2BP3 Silent p.N371N 0.38 TCGA-RY-A83X-01 8 110530475 110530475 G A PKHD1L1 Silent p.L3923L 0.30 TCGA-RY-A83X-01 9 107456886 107456886 C G OR13D1 Missense_Mutation p.L62V 0.39 deleterious(0.04) benign(0.049) TCGA-RY-A83X-01 9 107558678 107558678 C T ABCA1 Missense_Mutation p.V1717I 0.47 deleterious(0.02) possibly_damaging(0.627) TCGA-RY-A83X-01 X 13061059 13061059 G A FAM9C Silent p.T64T 0.08 TCGA-RY-A83X-01 X 133511650 133511650 G C PHF6 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.696) TCGA-RY-A83X-01 X 85404019 85404019 G A DACH2 Missense_Mutation p.R132H 0.06 deleterious(0) probably_damaging(0.999) TCGA-RY-A83Y-01 11 1214780 1214780 C T MUC5AC RNA 0.48 TCGA-RY-A83Y-01 12 52826917 52826917 C T KRT75 Silent p.E206E 0.40 TCGA-RY-A83Y-01 12 57037371 57037371 C T ATP5B Missense_Mutation p.G203E 0.38 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-RY-A83Y-01 14 51382685 51382685 C T PYGL Nonsense_Mutation p.W366* 0.41 TCGA-RY-A83Y-01 15 38793398 38793398 G T RASGRP1 Missense_Mutation p.N543K 0.43 deleterious(0.02) benign(0.217) TCGA-RY-A83Y-01 15 42107938 42107938 G A MAPKBP1 Silent p.S484S 0.45 TCGA-RY-A83Y-01 15 42298316 42298316 C T PLA2G4E Missense_Mutation p.V133M 0.38 deleterious(0.05) probably_damaging(0.978) TCGA-RY-A83Y-01 15 74708176 74708176 C T SEMA7A Missense_Mutation p.D318N 0.27 tolerated(0.27) benign(0.383) TCGA-RY-A83Y-01 15 88576211 88576211 T C NTRK3 Missense_Mutation p.I488V 0.59 tolerated(0.27) benign(0.006) TCGA-RY-A83Y-01 17 3029996 3029996 T C OR1G1 Missense_Mutation p.M284V 0.06 deleterious(0.01) benign(0.001) TCGA-RY-A83Y-01 17 40001799 40001799 T C KLHL10 Missense_Mutation p.V369A 0.34 deleterious(0.04) benign(0.326) TCGA-RY-A83Y-01 17 61911857 61911857 G A SMARCD2 Missense_Mutation p.L300F 0.32 deleterious(0.01) possibly_damaging(0.563) TCGA-RY-A83Y-01 17 6524258 6524259 CA - KIAA0753 Frame_Shift_Del p.S388Rfs*10 0.30 TCGA-RY-A83Y-01 17 73498194 73498194 T C CASKIN2 Silent p.S987S 0.46 TCGA-RY-A83Y-01 19 42794540 42794550 TTCCTCCTCAG - CIC Frame_Shift_Del p.S541Lfs*145 0.78 TCGA-RY-A83Y-01 1 119934802 119934802 C T HAO2 Nonsense_Mutation p.R281* 0.86 TCGA-RY-A83Y-01 1 144994814 144994814 A T PDE4DIP 5'UTR 0.12 TCGA-RY-A83Y-01 1 51439739 51439739 G T CDKN2C Nonsense_Mutation p.E102* 0.74 TCGA-RY-A83Y-01 1 78429797 78429797 G A FUBP1 Nonsense_Mutation p.R331* 0.73 TCGA-RY-A83Y-01 20 6078223 6078223 A - FERMT1 Frame_Shift_Del p.L302* 0.28 TCGA-RY-A83Y-01 2 179463526 179463526 C T TTN Missense_Mutation p.V18971M 0.42 TCGA-RY-A83Y-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-RY-A83Y-01 2 69046419 69046419 C T ARHGAP25 Nonsense_Mutation p.R390* 0.43 TCGA-RY-A83Y-01 2 73474935 73474936 - AA CCT7 Nonsense_Mutation p.Y222* 0.23 TCGA-RY-A83Y-01 3 44879796 44879796 T C KIF15 Silent p.H1067H 0.48 TCGA-RY-A83Y-01 4 30921804 30921804 G A PCDH7 Silent p.V1068V 0.33 TCGA-RY-A83Y-01 4 672778 672778 G C MYL5 Missense_Mutation p.G48A 0.28 deleterious(0) possibly_damaging(0.574) TCGA-RY-A83Y-01 4 84519288 84519288 G A AGPAT9 Missense_Mutation p.A361T 0.41 deleterious(0.01) possibly_damaging(0.62) TCGA-RY-A83Y-01 5 131309076 131309076 G A ACSL6 Silent p.H362H 0.58 TCGA-RY-A83Y-01 5 140176522 140176522 C T PCDHA2 Missense_Mutation p.A658V 0.39 tolerated_low_confidence(0.11) benign(0.068) TCGA-RY-A83Y-01 5 156593091 156593091 C T FAM71B Missense_Mutation p.R30Q 0.05 tolerated(0.06) benign(0.06) TCGA-RY-A83Y-01 5 37051937 37051937 G - NIPBL Frame_Shift_Del p.A2338Lfs*8 0.28 TCGA-RY-A83Y-01 6 119510998 119510998 G A MAN1A1 Silent p.I459I 0.14 TCGA-RY-A83Y-01 6 143091825 143091825 T C HIVEP2 Missense_Mutation p.T1351A 0.06 deleterious(0) probably_damaging(0.993) TCGA-RY-A83Y-01 6 158517457 158517457 C T SYNJ2 3'UTR 0.43 TCGA-RY-A83Y-01 7 150932567 150932567 C T CHPF2 Missense_Mutation p.R233W 0.38 deleterious(0) probably_damaging(0.995) TCGA-RY-A83Y-01 7 70231294 70231294 A G AUTS2 Missense_Mutation p.I555V 0.44 tolerated(0.15) possibly_damaging(0.701) TCGA-RY-A83Y-01 8 74737473 74737473 T C UBE2W Missense_Mutation p.D80G 0.78 tolerated(0.16) benign(0.007) TCGA-RY-A83Y-01 8 77761931 77761931 G C ZFHX4 Missense_Mutation p.E1277Q 0.09 possibly_damaging(0.607) TCGA-RY-A83Y-01 9 100204054 100204054 G A TDRD7 Missense_Mutation p.G251D 0.32 deleterious(0) probably_damaging(1) TCGA-RY-A83Y-01 9 37440681 37440682 AG - ZBTB5 Frame_Shift_Del p.L623Dfs*15 0.28 TCGA-RY-A83Y-01 X 88008826 88008826 A G CPXCR1 Silent p.S137S 0.75 TCGA-RY-A83Z-01 10 115529577 115529577 T A PLEKHS1 Missense_Mutation p.F151Y 0.64 tolerated(1) benign(0.362) TCGA-RY-A83Z-01 10 26463168 26463168 T A MYO3A Silent p.R1325R 0.06 TCGA-RY-A83Z-01 11 56058377 56058377 C T OR8H1 Silent p.Q54Q 0.48 TCGA-RY-A83Z-01 11 65268906 65268906 C A MALAT1 RNA 0.15 TCGA-RY-A83Z-01 11 71208529 71208529 G C NADSYN1 Missense_Mutation p.E589Q 0.07 tolerated(0.32) benign(0.039) TCGA-RY-A83Z-01 11 76372296 76372296 G A LRRC32 Missense_Mutation p.A114V 0.41 tolerated(0.55) benign(0.001) TCGA-RY-A83Z-01 12 53292607 53292607 A G KRT8 Missense_Mutation p.L381S 0.05 deleterious(0) benign(0.197) TCGA-RY-A83Z-01 12 56347145 56347145 C - DGKA Frame_Shift_Del p.L693Ffs*42 0.36 TCGA-RY-A83Z-01 12 56811559 56811559 C T TIMELESS Missense_Mutation p.G1190R 0.44 tolerated_low_confidence(0.25) benign(0.036) TCGA-RY-A83Z-01 12 70824293 70824294 - ATGATG KCNMB4 In_Frame_Ins p.D166_E167insDD 0.32 TCGA-RY-A83Z-01 13 25281245 25281245 G T ATP12A Missense_Mutation p.A758S 0.10 tolerated(0.19) benign(0.061) TCGA-RY-A83Z-01 14 92055893 92055893 G A CATSPERB Missense_Mutation p.H981Y 0.23 deleterious(0.01) benign(0.001) TCGA-RY-A83Z-01 15 20643858 20643858 T C HERC2P3 RNA 0.37 TCGA-RY-A83Z-01 15 25467402 25467402 C A SNORD115-27 3'Flank 0.44 TCGA-RY-A83Z-01 15 35087028 35087028 G A ACTC1 5'UTR 0.36 TCGA-RY-A83Z-01 15 53907717 53907717 G A WDR72 Nonsense_Mutation p.R896* 0.37 TCGA-RY-A83Z-01 15 86940603 86940603 G A AGBL1 Missense_Mutation p.R748H 0.12 deleterious(0) probably_damaging(0.998) TCGA-RY-A83Z-01 16 20043306 20043306 G A GPR139 Silent p.N271N 0.39 TCGA-RY-A83Z-01 16 21281137 21281137 A G CRYM Missense_Mutation p.F155L 0.51 tolerated(0.75) benign(0.11) TCGA-RY-A83Z-01 17 3030555 3030555 A C OR1G1 Missense_Mutation p.C97W 0.41 deleterious(0) probably_damaging(0.99) TCGA-RY-A83Z-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.87 tolerated(0.11) benign(0.308) TCGA-RY-A83Z-01 19 43859839 43859839 T A CD177 3'UTR 0.13 TCGA-RY-A83Z-01 19 54758866 54758866 C T LILRB5 Silent p.Q329Q 0.80 TCGA-RY-A83Z-01 19 56466710 56466710 G A NLRP8 Missense_Mutation p.R429Q 0.75 tolerated(0.35) benign(0.003) TCGA-RY-A83Z-01 1 147091170 147091170 A C BCL9 Missense_Mutation p.E403D 0.37 deleterious(0.03) probably_damaging(0.952) TCGA-RY-A83Z-01 1 207741294 207741294 T C CR1 Missense_Mutation p.F1360L 0.32 tolerated(0.15) benign(0.313) TCGA-RY-A83Z-01 1 55561033 55561033 T G USP24 Missense_Mutation p.N2033T 0.40 deleterious(0) probably_damaging(0.986) TCGA-RY-A83Z-01 22 36537770 36537770 C T APOL3 Silent p.A229A 0.43 TCGA-RY-A83Z-01 22 38075664 38075664 G A LGALS1 Missense_Mutation p.E106K 0.47 deleterious(0.04) benign(0.179) TCGA-RY-A83Z-01 22 41347409 41347409 G A RBX1 Missense_Mutation p.A3T 0.21 tolerated(0.18) possibly_damaging(0.811) TCGA-RY-A83Z-01 2 163200717 163200717 C G GCA 5'UTR 0.41 TCGA-RY-A83Z-01 2 179437479 179437479 C G TTN Silent p.V24460V 0.05 TCGA-RY-A83Z-01 2 186670584 186670584 A G FSIP2 Silent p.K5606K 0.39 TCGA-RY-A83Z-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-RY-A83Z-01 2 96780731 96780733 GAA - ADRA2B In_Frame_Del p.F386del 0.43 TCGA-RY-A83Z-01 3 10134979 10134979 G A FANCD2 Missense_Mutation p.S1287N 0.36 deleterious(0.03) possibly_damaging(0.875) TCGA-RY-A83Z-01 4 123301233 123301233 C A ADAD1 Missense_Mutation p.S3R 0.38 tolerated(0.07) benign(0.003) TCGA-RY-A83Z-01 4 144141644 144141644 C T USP38 3'UTR 0.31 TCGA-RY-A83Z-01 4 8228808 8228808 C T SH3TC1 Missense_Mutation p.P463S 0.35 tolerated(0.09) probably_damaging(0.977) TCGA-RY-A83Z-01 5 55212675 55212675 C T IL31RA Silent p.C674C 0.41 TCGA-RY-A83Z-01 5 56207034 56207034 T G SETD9 Missense_Mutation p.V46G 0.44 deleterious(0) benign(0.265) TCGA-RY-A83Z-01 6 161152785 161152786 TT - PLG Frame_Shift_Del p.F483Wfs*29 0.32 TCGA-RY-A83Z-01 6 161469730 161469730 G A MAP3K4 Silent p.Q142Q 0.42 TCGA-RY-A83Z-01 6 25727536 25727536 G A HIST1H2BA 3'UTR 0.41 TCGA-RY-A83Z-01 6 25921320 25921320 C A SLC17A2 Missense_Mutation p.G159V 0.41 tolerated(0.43) probably_damaging(0.919) TCGA-RY-A83Z-01 6 31963505 31963505 G A C4A Missense_Mutation p.R1055Q 0.05 deleterious(0) possibly_damaging(0.78) TCGA-RY-A83Z-01 6 52268814 52268814 A G PAQR8 Missense_Mutation p.E268G 0.48 deleterious(0) probably_damaging(1) TCGA-RY-A83Z-01 7 103234846 103234846 C T RELN Silent p.Q1211Q 0.03 TCGA-RY-A83Z-01 7 151848014 151848014 T C KMT2C Missense_Mutation p.T4249A 0.51 benign(0.007) TCGA-RY-A83Z-01 7 24843938 24843938 A G OSBPL3 Missense_Mutation p.F855L 0.44 deleterious(0) possibly_damaging(0.838) TCGA-RY-A83Z-01 8 24187604 24187604 T C ADAM28 Missense_Mutation p.I360T 0.09 tolerated(0.75) benign(0.026) TCGA-RY-A83Z-01 8 71619293 71619293 T A XKR9 Missense_Mutation p.M133K 0.36 deleterious(0) probably_damaging(0.988) TCGA-RY-A83Z-01 9 33037066 33037066 A G DNAJA1 Missense_Mutation p.I310V 0.88 tolerated(0.57) benign(0.019) TCGA-RY-A83Z-01 X 10176604 10176604 G A CLCN4 Missense_Mutation p.V455I 0.43 tolerated(1) benign(0.001) TCGA-RY-A83Z-01 X 135426598 135426598 C T GPR112 Nonsense_Mutation p.Q245* 0.35 TCGA-RY-A83Z-01 X 151092272 151092272 C G MAGEA4 Missense_Mutation p.L46V 0.37 tolerated(0.16) benign(0.173) TCGA-RY-A83Z-01 X 151092299 151092299 C T MAGEA4 Missense_Mutation p.P55S 0.29 tolerated(0.27) benign(0.148) TCGA-RY-A83Z-01 X 153664056 153664056 A T ATP6AP1 Missense_Mutation p.Q411L 0.44 tolerated(0.08) benign(0.186) TCGA-RY-A83Z-01 X 19378946 19378946 C A MAP3K15 Missense_Mutation p.G1288V 0.39 deleterious(0) probably_damaging(0.959) TCGA-RY-A83Z-01 X 22245635 22245635 A T PHEX Missense_Mutation p.K659N 0.51 tolerated(0.31) possibly_damaging(0.587) TCGA-RY-A83Z-01 X 35959495 35959495 C G CXorf22 Missense_Mutation p.T166S 0.27 tolerated(0.62) benign(0.003) TCGA-RY-A83Z-01 X 47485791 47485791 G A CFP Silent p.D356D 0.30 TCGA-RY-A83Z-01 X 57935760 57935760 G A ZXDA Silent p.C365C 0.43 TCGA-RY-A83Z-01 X 57936020 57936020 C T ZXDA Missense_Mutation p.A279T 0.75 tolerated(0.35) benign(0.071) TCGA-RY-A83Z-01 X 73740894 73740894 G A SLC16A2 Missense_Mutation p.R167H 0.40 tolerated(0.17) benign(0.055) TCGA-RY-A83Z-01 X 76889121 76889122 - T ATRX Frame_Shift_Ins p.T1630Nfs*8 0.28 TCGA-RY-A840-01 10 71690264 71690264 G A COL13A1 Missense_Mutation p.G536R 0.56 deleterious(0.02) probably_damaging(1) TCGA-RY-A840-01 11 59564807 59564807 T C STX3 Silent p.L280L 0.10 TCGA-RY-A840-01 11 63313864 63313864 C T RARRES3 3'UTR 0.31 TCGA-RY-A840-01 14 24687634 24687634 G A NEDD8-MDP1 Silent p.L8L 0.11 TCGA-RY-A840-01 15 101528897 101528897 G A LRRK1 Silent p.G164G 0.50 TCGA-RY-A840-01 16 20576155 20576155 G A ACSM2B Nonsense_Mutation p.R5* 0.52 TCGA-RY-A840-01 17 2594051 2594051 A T CLUH Missense_Mutation p.L1256Q 0.07 tolerated(0.05) possibly_damaging(0.899) TCGA-RY-A840-01 19 11134287 11134287 G A SMARCA4 Missense_Mutation p.E985K 0.42 probably_damaging(0.962) TCGA-RY-A840-01 19 17015311 17015311 G A CPAMD8 Missense_Mutation p.T1407I 0.39 tolerated(0.24) benign(0.041) TCGA-RY-A840-01 19 56160918 56160918 A C CCDC106 Missense_Mutation p.D94A 0.77 deleterious(0) probably_damaging(0.999) TCGA-RY-A840-01 1 155226515 155226515 C T SCAMP3 Missense_Mutation p.A283T 0.33 deleterious(0.03) probably_damaging(0.957) TCGA-RY-A840-01 1 157737385 157737385 C T FCRL2 Intron 0.52 TCGA-RY-A840-01 1 16935213 16935213 G A NBPF1 5'UTR 0.35 TCGA-RY-A840-01 20 49236599 49236599 G A FAM65C Missense_Mutation p.R61W 0.48 deleterious(0) probably_damaging(0.988) TCGA-RY-A840-01 21 42694893 42694893 C G FAM3B Silent p.A21A 0.50 TCGA-RY-A840-01 21 46032420 46032420 G C KRTAP10-8 Missense_Mutation p.V135L 0.43 tolerated(0.07) unknown(0) TCGA-RY-A840-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-RY-A840-01 2 242135327 242135327 G A ANO7 Intron 0.44 TCGA-RY-A840-01 5 118728917 118728917 C T TNFAIP8 Silent p.H146H 0.37 TCGA-RY-A840-01 6 36989372 36989372 G A FGD2 Missense_Mutation p.E440K 0.53 tolerated(0.2) benign(0.118) TCGA-RY-A840-01 7 138263957 138263957 T C TRIM24 Silent p.Y755Y 0.44 TCGA-RY-A840-01 9 140062230 140062230 A G GRIN1 Missense_Mutation p.Y923C 0.07 tolerated_low_confidence(0.12) possibly_damaging(0.765) TCGA-RY-A840-01 X 49774399 49774399 T A CLCN5 Intron 0.23 TCGA-RY-A843-01 10 105215289 105215289 G A CALHM1 Silent p.D257D 0.25 TCGA-RY-A843-01 10 135003172 135003172 C T KNDC1 Silent p.N504N 0.23 TCGA-RY-A843-01 10 81052057 81052057 G A ZMIZ1 Missense_Mutation p.A301T 0.26 probably_damaging(0.993) TCGA-RY-A843-01 10 93590772 93590772 G C TNKS2 Splice_Site p.X399_splice 0.06 TCGA-RY-A843-01 12 25398269 25398269 C G KRAS Missense_Mutation p.S17T 0.29 deleterious(0.04) possibly_damaging(0.884) TCGA-RY-A843-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.30 deleterious(0.02) possibly_damaging(0.773) TCGA-RY-A843-01 12 52841730 52841730 G A KRT6B Missense_Mutation p.A419V 0.06 deleterious(0.02) possibly_damaging(0.773) TCGA-RY-A843-01 15 41191890 41191890 G T VPS18 Missense_Mutation p.V292L 0.30 deleterious(0.04) possibly_damaging(0.627) TCGA-RY-A843-01 17 61890672 61890672 G A DDX42 Missense_Mutation p.G587D 0.25 deleterious(0) probably_damaging(1) TCGA-RY-A843-01 17 76490800 76490800 G A DNAH17 Missense_Mutation p.R2035W 0.07 probably_damaging(1) TCGA-RY-A843-01 19 36214058 36214058 C T KMT2B Missense_Mutation p.R962C 0.06 probably_damaging(0.993) TCGA-RY-A843-01 19 36674609 36674609 G A ZNF565 Silent p.L87L 0.29 TCGA-RY-A843-01 1 210012341 210012341 A G DIEXF Missense_Mutation p.I384V 0.32 tolerated(0.5) benign(0.001) TCGA-RY-A843-01 1 223567708 223567708 C T C1orf65 Silent p.T297T 0.33 TCGA-RY-A843-01 1 235505740 235505740 A G GGPS1 Missense_Mutation p.I186V 0.29 tolerated(0.09) possibly_damaging(0.68) TCGA-RY-A843-01 1 38355310 38355310 T C INPP5B Missense_Mutation p.Q239R 0.34 tolerated(0.44) benign(0.36) TCGA-RY-A843-01 20 22563350 22563350 G A FOXA2 Missense_Mutation p.A177V 0.24 deleterious(0) probably_damaging(0.999) TCGA-RY-A843-01 21 19726144 19726144 A G TMPRSS15 Missense_Mutation p.I306T 0.28 deleterious(0) possibly_damaging(0.864) TCGA-RY-A843-01 22 23406094 23406094 C T RTDR1 Silent p.A213A 0.35 TCGA-RY-A843-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-RY-A843-01 5 134367042 134367042 T C PITX1 Missense_Mutation p.Q109R 0.50 deleterious(0.04) probably_damaging(0.964) TCGA-RY-A843-01 6 76412532 76412533 - A SENP6 Frame_Shift_Ins p.P822Afs*4 0.23 TCGA-RY-A843-01 8 109796648 109796648 T C TMEM74 Missense_Mutation p.H227R 0.27 deleterious(0) probably_damaging(0.981) TCGA-RY-A843-01 8 131104362 131104362 G C ASAP1 Missense_Mutation p.P810R 0.28 tolerated(0.07) probably_damaging(0.916) TCGA-RY-A843-01 8 30335338 30335338 G A RBPMS Silent p.K56K 0.32 TCGA-RY-A843-01 9 133948658 133948658 G A LAMC3 Silent p.Q1148Q 0.50 TCGA-RY-A843-01 X 128703312 128703312 A G OCRL Missense_Mutation p.Y513C 0.62 deleterious(0) probably_damaging(1) TCGA-RY-A845-01 10 68535239 68535239 T C CTNNA3 Missense_Mutation p.D364G 0.39 tolerated(0.1) benign(0.286) TCGA-RY-A845-01 11 44098861 44098861 G A ACCS Missense_Mutation p.A197T 0.12 deleterious(0.03) possibly_damaging(0.531) TCGA-RY-A845-01 12 21531254 21531254 A G IAPP Missense_Mutation p.N55S 0.34 tolerated(0.41) benign(0.027) TCGA-RY-A845-01 14 25043625 25043625 C T CTSG Silent p.T140T 0.05 TCGA-RY-A845-01 16 23197720 23197720 G A SCNN1G Missense_Mutation p.R43H 0.07 deleterious(0) probably_damaging(1) TCGA-RY-A845-01 16 82104725 82104725 C T HSD17B2 Silent p.S219S 0.09 TCGA-RY-A845-01 17 17119748 17119748 T C FLCN Missense_Mutation p.N416D 0.21 deleterious(0.01) probably_damaging(0.929) TCGA-RY-A845-01 17 7226076 7226076 C T NEURL4 Silent p.K901K 0.11 TCGA-RY-A845-01 17 7578496 7578496 A G TP53 Missense_Mutation p.L145P 0.89 tolerated(0.05) probably_damaging(1) TCGA-RY-A845-01 19 9049830 9049830 T A MUC16 Missense_Mutation p.I10601F 0.35 benign(0.293) TCGA-RY-A845-01 1 229770818 229770818 T A URB2 Missense_Mutation p.L153H 0.16 deleterious(0) probably_damaging(0.999) TCGA-RY-A845-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-RY-A845-01 2 36737265 36737265 T C CRIM1 Silent p.Y547Y 0.09 TCGA-RY-A845-01 2 45807076 45807076 C T SRBD1 Missense_Mutation p.R337K 0.10 tolerated(0.93) benign(0.002) TCGA-RY-A845-01 2 86398455 86398455 C T IMMT Silent p.A145A 0.24 TCGA-RY-A845-01 3 38812790 38812790 A G SCN10A Silent p.D193D 0.38 TCGA-RY-A845-01 4 48173436 48173436 A G TEC Missense_Mutation p.F92L 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-RY-A845-01 4 96124101 96124101 G A UNC5C Silent p.V639V 0.12 TCGA-RY-A845-01 5 176951816 176951816 G C FAM193B Missense_Mutation p.P556A 0.47 tolerated_low_confidence(0.17) benign(0.026) TCGA-RY-A845-01 6 13584419 13584419 G A SIRT5 Missense_Mutation p.R26Q 0.33 tolerated_low_confidence(0.85) benign(0.001) TCGA-RY-A845-01 6 151686867 151686867 T C ZBTB2 Missense_Mutation p.N445S 0.05 tolerated_low_confidence(0.72) benign(0.113) TCGA-RY-A845-01 6 151687324 151687324 G A ZBTB2 Silent p.L293L 0.15 TCGA-RY-A845-01 6 27799001 27799001 C T HIST1H4K Missense_Mutation p.G102D 0.33 tolerated_low_confidence(0.06) possibly_damaging(0.571) TCGA-RY-A845-01 6 29365261 29365261 C T OR12D2 Missense_Mutation p.A262V 0.08 tolerated(0.06) benign(0.035) TCGA-RY-A845-01 6 31901429 31901429 G A CFB Missense_Mutation p.R100Q 0.48 tolerated(0.07) benign(0.158) TCGA-RY-A845-01 6 42713776 42713776 C A TBCC Missense_Mutation p.R12S 0.33 tolerated_low_confidence(0.14) benign(0.007) TCGA-RY-A845-01 7 75172231 75172231 G T HIP1 Missense_Mutation p.N943K 0.09 deleterious(0) benign(0.034) TCGA-RY-A845-01 9 90252944 90252944 T A DAPK1 Missense_Mutation p.L124H 0.08 deleterious(0) probably_damaging(0.995) TCGA-RY-A845-01 X 150842518 150842518 A G PASD1 Missense_Mutation p.T679A 0.42 tolerated(0.22) benign(0.388) TCGA-RY-A845-01 X 15342872 15342872 G C PIGA Nonsense_Mutation p.S368* 0.10 TCGA-RY-A845-01 X 47976486 47976486 G A SSX6 3'Flank 0.07 TCGA-RY-A845-01 X 53105924 53105924 G A GPR173 Missense_Mutation p.A41T 0.06 tolerated(0.29) benign(0.046) TCGA-RY-A845-01 X 69645908 69645908 G A GDPD2 Missense_Mutation p.A104T 0.51 deleterious(0.01) possibly_damaging(0.77) TCGA-RY-A847-01 11 48510452 48510452 C A OR4A47 Silent p.T36T 0.12 TCGA-RY-A847-01 15 64045206 64045206 T C HERC1 Missense_Mutation p.K618R 0.06 probably_damaging(0.995) TCGA-RY-A847-01 15 79312394 79312394 G A RASGRF1 Missense_Mutation p.T532M 0.10 deleterious(0.04) benign(0.064) TCGA-RY-A847-01 16 2048177 2048177 G C ZNF598 3'UTR 0.39 TCGA-RY-A847-01 16 48218516 48218516 C T ABCC11 Silent p.A1031A 0.40 TCGA-RY-A847-01 17 60345534 60345534 G A TBC1D3P2 RNA 0.20 TCGA-RY-A847-01 19 5866758 5866758 C T FUT5 Missense_Mutation p.A327T 0.16 tolerated(0.5) benign(0.013) TCGA-RY-A847-01 19 9047027 9047027 G A MUC16 Missense_Mutation p.T11535M 0.21 benign(0.042) TCGA-RY-A847-01 1 248458774 248458774 G A OR2T12 Missense_Mutation p.S36F 0.37 deleterious(0) probably_damaging(0.968) TCGA-RY-A847-01 1 78429977 78429978 - T FUBP1 Frame_Shift_Ins p.I301Nfs*4 0.19 TCGA-RY-A847-01 2 135926349 135926349 T G RAB3GAP1 Nonstop_Mutation p.*989Gext*3 0.08 TCGA-RY-A847-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-RY-A847-01 2 220168541 220168541 T C PTPRN Missense_Mutation p.H98R 0.17 tolerated(0.14) benign(0.003) TCGA-RY-A847-01 2 96690336 96690336 C T GPAT2 Missense_Mutation p.S503N 0.31 tolerated(0.92) benign(0.383) TCGA-RY-A847-01 3 114058171 114058171 C T ZBTB20 Missense_Mutation p.C636Y 0.08 deleterious(0) probably_damaging(0.99) TCGA-RY-A847-01 3 124952039 124952039 C - ZNF148 Frame_Shift_Del p.E511Kfs*8 0.10 TCGA-RY-A847-01 5 90079059 90079059 C T GPR98 Silent p.Y4450Y 0.14 TCGA-RY-A847-01 6 32097117 32097117 G A FKBPL Silent p.G147G 0.42 TCGA-RY-A847-01 7 103202290 103202290 C T RELN Missense_Mutation p.G1774E 0.10 deleterious(0) probably_damaging(1) TCGA-RY-A847-01 7 107214150 107214150 T C DUS4L Silent p.G80G 0.03 TCGA-RY-A847-01 X 135570542 135570542 C T BRS3 Missense_Mutation p.A90V 0.79 deleterious(0.01) probably_damaging(1) TCGA-RY-A847-01 Y 3447662 3447662 C T TGIF2LY Missense_Mutation p.T126M 0.32 tolerated(0.15) benign(0.009) TCGA-S9-A6TS-01 10 14891775 14891775 G A HSPA14 Silent p.P144P 0.39 TCGA-S9-A6TS-01 10 15254949 15254949 C G FAM171A1 Missense_Mutation p.E880Q 0.07 deleterious(0) probably_damaging(1) TCGA-S9-A6TS-01 10 27410369 27410369 G C YME1L1 Missense_Mutation p.P472R 0.07 tolerated(0.42) benign(0.261) TCGA-S9-A6TS-01 11 128781870 128781870 C A KCNJ5 Silent p.I234I 0.03 TCGA-S9-A6TS-01 11 550110 550110 C A LRRC56 Missense_Mutation p.S154R 0.09 deleterious(0) probably_damaging(0.998) TCGA-S9-A6TS-01 11 55371229 55371229 A G OR4C11 Silent p.S207S 0.78 TCGA-S9-A6TS-01 11 55419188 55419188 C T OR4S2 Missense_Mutation p.A270V 0.20 deleterious(0) benign(0.2) TCGA-S9-A6TS-01 11 56085997 56085997 G A OR8K3 Missense_Mutation p.G72D 0.37 deleterious_low_confidence(0) benign(0.441) TCGA-S9-A6TS-01 11 5862807 5862807 A C OR52E6 Missense_Mutation p.H107Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-S9-A6TS-01 11 66555677 66555677 T G C11orf80 Silent p.T190T 0.11 TCGA-S9-A6TS-01 11 6789589 6789589 G A OR2AG2 Silent p.Y200Y 0.12 TCGA-S9-A6TS-01 11 74716640 74716640 C G NEU3 Nonsense_Mutation p.Y163* 0.37 TCGA-S9-A6TS-01 12 102056150 102056150 A G MYBPC1 Missense_Mutation p.R658G 0.13 deleterious(0) probably_damaging(0.999) TCGA-S9-A6TS-01 12 109610081 109610081 C T ACACB Missense_Mutation p.A346V 0.34 deleterious(0.01) benign(0.365) TCGA-S9-A6TS-01 12 111099001 111099001 A G HVCN1 Silent p.L92L 0.32 TCGA-S9-A6TS-01 12 124325908 124325908 G T DNAH10 Missense_Mutation p.D1608Y 0.37 possibly_damaging(0.749) TCGA-S9-A6TS-01 12 53703027 53703027 G C AAAS Silent p.P283P 0.07 TCGA-S9-A6TS-01 14 21360166 21360166 A T RNASE3 Missense_Mutation p.L107F 0.04 deleterious(0.03) benign(0.431) TCGA-S9-A6TS-01 14 75130295 75130295 G C AREL1 3'UTR 0.12 TCGA-S9-A6TS-01 15 50168650 50168650 T C ATP8B4 Missense_Mutation p.N951S 0.04 tolerated(0.07) probably_damaging(0.993) TCGA-S9-A6TS-01 15 51350344 51350344 T C TNFAIP8L3 Missense_Mutation p.M205V 0.22 deleterious(0) probably_damaging(0.979) TCGA-S9-A6TS-01 16 21209105 21209105 C A ZP2 Nonsense_Mutation p.E693* 0.35 TCGA-S9-A6TS-01 16 27459933 27459933 G T IL21R Missense_Mutation p.V316L 0.12 tolerated(0.16) benign(0.009) TCGA-S9-A6TS-01 16 48396115 48396115 G T SIAH1 Nonsense_Mutation p.C106* 0.37 TCGA-S9-A6TS-01 17 27074931 27074931 G A TRAF4 Missense_Mutation p.G89D 0.51 deleterious(0) probably_damaging(0.992) TCGA-S9-A6TS-01 17 27186225 27186225 C T ERAL1 Missense_Mutation p.T372I 0.40 tolerated(0.34) benign(0.028) TCGA-S9-A6TS-01 17 36070536 36070536 T C HNF1B Missense_Mutation p.N394S 0.07 tolerated(1) benign(0.002) TCGA-S9-A6TS-01 17 46846534 46846534 G T TTLL6 Silent p.L831L 0.08 TCGA-S9-A6TS-01 17 51901793 51901793 G C KIF2B Missense_Mutation p.E467Q 0.06 deleterious(0) probably_damaging(1) TCGA-S9-A6TS-01 17 74722545 74722545 T C JMJD6 Missense_Mutation p.S5G 0.43 tolerated(0.09) possibly_damaging(0.495) TCGA-S9-A6TS-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.78 deleterious(0) probably_damaging(0.998) TCGA-S9-A6TS-01 18 19780795 19780795 C T GATA6 3'UTR 0.31 TCGA-S9-A6TS-01 19 16957909 16957930 AGCCAAGCGGTCTCTGGTGAGT C SIN3B Splice_Site p.X237_splice 0.16 TCGA-S9-A6TS-01 19 22940995 22940995 T A ZNF99 Missense_Mutation p.K572N 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-S9-A6TS-01 19 39909586 39909586 G C PLEKHG2 Missense_Mutation p.W402C 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-S9-A6TS-01 19 6702526 6702526 G T C3 Missense_Mutation p.S770R 0.46 deleterious(0) probably_damaging(0.999) TCGA-S9-A6TS-01 1 10479685 10479685 A G PGD Splice_Site p.X445_splice 0.34 TCGA-S9-A6TS-01 1 113615855 113615855 C T LRIG2 5'UTR 0.50 TCGA-S9-A6TS-01 1 159284144 159284144 G T OR10J3 Silent p.L102L 0.12 TCGA-S9-A6TS-01 1 200801875 200801875 T C CAMSAP2 Missense_Mutation p.Y277H 0.10 deleterious(0) probably_damaging(1) TCGA-S9-A6TS-01 1 206634405 206634405 G A SRGAP2 Silent p.S866S 0.22 TCGA-S9-A6TS-01 1 22168605 22168605 G A HSPG2 Missense_Mutation p.P3028L 0.43 probably_damaging(1) TCGA-S9-A6TS-01 1 241886728 241886728 C T WDR64 Missense_Mutation p.S385F 0.31 deleterious(0) probably_damaging(0.999) TCGA-S9-A6TS-01 1 44595585 44595585 G A KLF17 Silent p.P214P 0.11 TCGA-S9-A6TS-01 1 67793919 67793919 A G IL12RB2 Silent p.Q172Q 0.37 TCGA-S9-A6TS-01 20 46291958 46291958 T C SULF2 Splice_Site p.X743_splice 0.05 TCGA-S9-A6TS-01 21 34053878 34053878 T A SYNJ1 Silent p.S466S 0.03 TCGA-S9-A6TS-01 21 36164874 36164874 C T RUNX1 Missense_Mutation p.R334H 0.50 deleterious(0) probably_damaging(0.923) TCGA-S9-A6TS-01 2 179472196 179472196 C T TTN Missense_Mutation p.G17740D 0.11 TCGA-S9-A6TS-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6TS-01 2 234113018 234113018 C T INPP5D Silent p.P1062P 0.08 TCGA-S9-A6TS-01 2 99013230 99013230 G T CNGA3 Missense_Mutation p.D533Y 0.07 deleterious(0) probably_damaging(1) TCGA-S9-A6TS-01 2 99013232 99013232 T A CNGA3 Missense_Mutation p.D533E 0.07 deleterious(0) probably_damaging(0.98) TCGA-S9-A6TS-01 3 122090540 122090540 A C CCDC58 Missense_Mutation p.C53W 0.40 deleterious(0) probably_damaging(1) TCGA-S9-A6TS-01 3 45132791 45132791 C T CDCP1 Missense_Mutation p.E623K 0.11 tolerated(0.12) benign(0.407) TCGA-S9-A6TS-01 3 47762184 47762184 A C SMARCC1 Missense_Mutation p.L230V 0.12 deleterious(0) possibly_damaging(0.839) TCGA-S9-A6TS-01 3 49060608 49060608 C A NDUFAF3 3'UTR 0.39 TCGA-S9-A6TS-01 3 49362451 49362451 C T USP4 Missense_Mutation p.R170Q 0.40 deleterious(0.04) possibly_damaging(0.763) TCGA-S9-A6TS-01 3 67058751 67058751 G A KBTBD8 Missense_Mutation p.R583Q 0.07 deleterious(0.05) probably_damaging(0.957) TCGA-S9-A6TS-01 3 69168928 69168928 T C LMOD3 Missense_Mutation p.D193G 0.13 tolerated(0.1) benign(0.017) TCGA-S9-A6TS-01 4 104512798 104512798 A G TACR3 Missense_Mutation p.C311R 0.05 deleterious(0.02) probably_damaging(1) TCGA-S9-A6TS-01 4 125631651 125631651 C T ANKRD50 Missense_Mutation p.E6K 0.09 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-S9-A6TS-01 4 153251912 153251912 C G FBXW7 Missense_Mutation p.W365S 0.04 deleterious(0) probably_damaging(1) TCGA-S9-A6TS-01 4 154265890 154265890 A T MND1 Translation_Start_Site p.M1? 0.40 tolerated(0.06) benign(0.015) TCGA-S9-A6TS-01 6 105177553 105177553 C T HACE1 Missense_Mutation p.G905D 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-S9-A6TS-01 6 129781361 129781361 G A LAMA2 Missense_Mutation p.R2295H 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-S9-A6TS-01 6 26234471 26234471 T C HIST1H1D 3'UTR 0.11 TCGA-S9-A6TS-01 6 50810826 50810826 G T TFAP2B Silent p.T368T 0.12 TCGA-S9-A6TS-01 7 100685442 100685442 T A MUC17 Missense_Mutation p.L3582H 0.46 benign(0.059) TCGA-S9-A6TS-01 7 28763836 28763836 T C CREB5 Intron 0.10 TCGA-S9-A6TS-01 7 53104086 53104086 G T POM121L12 Missense_Mutation p.G241V 0.05 tolerated(0.61) probably_damaging(0.988) TCGA-S9-A6TS-01 8 110477389 110477389 C T PKHD1L1 Silent p.D2776D 0.08 TCGA-S9-A6TS-01 8 135596191 135596191 A C ZFAT Missense_Mutation p.L924R 0.25 deleterious(0) probably_damaging(1) TCGA-S9-A6TS-01 8 145638211 145638211 C T SLC39A4 Missense_Mutation p.E583K 0.35 tolerated(0.5) benign(0.094) TCGA-S9-A6TS-01 8 18257674 18257674 C T NAT2 Missense_Mutation p.A54V 0.32 tolerated(0.38) benign(0.004) TCGA-S9-A6TS-01 9 104433268 104433268 G T GRIN3A Missense_Mutation p.P476T 0.07 deleterious(0) possibly_damaging(0.759) TCGA-S9-A6TS-01 9 33387018 33387018 C T AQP7 Missense_Mutation p.G73S 0.14 tolerated(0.07) possibly_damaging(0.449) TCGA-S9-A6TS-01 X 109694101 109694101 G C RGAG1 Missense_Mutation p.A86P 0.05 deleterious(0.01) probably_damaging(0.943) TCGA-S9-A6TS-01 X 111097327 111097327 G A TRPC5 Missense_Mutation p.A303V 0.07 deleterious(0) probably_damaging(0.933) TCGA-S9-A6TS-01 X 111914414 111914414 G A LHFPL1 Missense_Mutation p.R69C 0.44 deleterious(0) probably_damaging(0.998) TCGA-S9-A6TS-01 X 123615606 123615606 C G TENM1 Missense_Mutation p.E1309Q 0.47 deleterious(0.01) possibly_damaging(0.737) TCGA-S9-A6TS-01 X 129480618 129480618 G A SLC25A14 Silent p.A90A 0.09 TCGA-S9-A6TS-01 X 148048608 148048608 T C AFF2 Missense_Mutation p.S1068P 0.03 tolerated(0.14) benign(0.246) TCGA-S9-A6TS-01 X 149828189 149828189 T C MTM1 Missense_Mutation p.F438S 0.07 deleterious(0) probably_damaging(1) TCGA-S9-A6TS-01 X 52681398 52681398 C G SSX7 Splice_Site p.X62_splice 0.12 TCGA-S9-A6TS-01 X 66931475 66931475 A G AR Missense_Mutation p.N706S 0.11 deleterious(0) probably_damaging(0.997) TCGA-S9-A6TS-01 X 76812938 76812938 G A ATRX Missense_Mutation p.T2228I 0.41 possibly_damaging(0.518) TCGA-S9-A6TS-01 X 77254082 77254082 G A ATP7A Missense_Mutation p.E482K 0.04 tolerated(0.61) benign(0.044) TCGA-S9-A6TU-01 10 34558691 34558691 T C PARD3 Missense_Mutation p.M1108V 0.22 tolerated(0.51) benign(0.001) TCGA-S9-A6TU-01 11 36302379 36302379 C T COMMD9 Silent p.S20S 0.45 TCGA-S9-A6TU-01 11 55038328 55038330 TAG AT TRIM48 3'UTR 0.29 TCGA-S9-A6TU-01 12 56743287 56743287 G C STAT2 Missense_Mutation p.L422V 0.04 deleterious(0.01) possibly_damaging(0.558) TCGA-S9-A6TU-01 14 103465909 103465909 C T CDC42BPB Missense_Mutation p.V197M 0.41 deleterious(0) possibly_damaging(0.83) TCGA-S9-A6TU-01 14 93650096 93650096 C G MOAP1 Missense_Mutation p.K164N 0.28 deleterious(0) probably_damaging(0.945) TCGA-S9-A6TU-01 14 99641152 99641152 G A BCL11B Missense_Mutation p.A674V 0.53 tolerated(0.99) benign(0.003) TCGA-S9-A6TU-01 16 23383131 23383131 C T SCNN1B Missense_Mutation p.P360L 0.27 tolerated(0.05) benign(0.108) TCGA-S9-A6TU-01 17 14248415 14248423 GAGGCCCCT AAGAATCCG HS3ST3B1 Missense_Mutation p.EA209KN 0.12 TCGA-S9-A6TU-01 17 46629478 46629478 C A HOXB3 Missense_Mutation p.G120V 0.43 tolerated(0.11) benign(0.017) TCGA-S9-A6TU-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.74 deleterious(0) probably_damaging(1) TCGA-S9-A6TU-01 19 13947327 13947327 C T ZSWIM4 3'Flank 0.44 TCGA-S9-A6TU-01 1 166987180 166987180 A T MAEL Missense_Mutation p.D342V 0.09 deleterious(0) probably_damaging(0.997) TCGA-S9-A6TU-01 1 171561022 171561022 C T PRRC2C 3'UTR 0.26 TCGA-S9-A6TU-01 1 17594365 17594365 C T PADI3 Missense_Mutation p.T187M 0.35 deleterious(0.01) possibly_damaging(0.658) TCGA-S9-A6TU-01 1 248004293 248004293 T C OR11L1 Silent p.R302R 0.33 TCGA-S9-A6TU-01 21 17199374 17199374 A G USP25 Silent p.R515R 0.30 TCGA-S9-A6TU-01 2 141986794 141986794 A G LRP1B Silent p.L270L 0.05 TCGA-S9-A6TU-01 2 179466815 179466815 G A TTN Nonsense_Mutation p.Q18395* 0.12 TCGA-S9-A6TU-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6TU-01 4 71232729 71232729 A G SMR3A 3'UTR 0.12 TCGA-S9-A6TU-01 5 132270106 132270106 A C AFF4 Missense_Mutation p.D217E 0.05 tolerated(1) benign(0.013) TCGA-S9-A6TU-01 6 24534026 24534026 A G ALDH5A1 3'UTR 0.50 TCGA-S9-A6TU-01 6 46637948 46637948 C A SLC25A27 Silent p.R261R 0.09 TCGA-S9-A6TU-01 7 138946218 138946218 A T UBN2 Missense_Mutation p.S376C 0.46 deleterious(0.02) possibly_damaging(0.533) TCGA-S9-A6TU-01 7 148701035 148701035 C T PDIA4 Missense_Mutation p.V597M 0.30 deleterious(0) probably_damaging(0.942) TCGA-S9-A6TU-01 8 97157052 97157052 G A GDF6 Silent p.D369D 0.30 TCGA-S9-A6TV-01 10 11531171 11531171 C T USP6NL Missense_Mutation p.M215I 0.24 tolerated(0.19) possibly_damaging(0.55) TCGA-S9-A6TV-01 11 103194689 103194689 C T DYNC2H1 Missense_Mutation p.R4011C 0.12 probably_damaging(0.992) TCGA-S9-A6TV-01 13 80117788 80117788 T C NDFIP2 Missense_Mutation p.S271P 0.55 deleterious(0) probably_damaging(0.988) TCGA-S9-A6TV-01 14 103442111 103442111 C T CDC42BPB Missense_Mutation p.G473S 0.21 tolerated(0.74) benign(0.008) TCGA-S9-A6TV-01 15 34531219 34531219 C A SLC12A6 Missense_Mutation p.W860L 0.45 deleterious(0) probably_damaging(0.999) TCGA-S9-A6TV-01 15 48539642 48539642 G A SLC12A1 Missense_Mutation p.A557T 0.61 deleterious(0) probably_damaging(0.997) TCGA-S9-A6TV-01 15 89736538 89736538 A G ABHD2 Missense_Mutation p.K357E 0.39 tolerated(0.06) benign(0.371) TCGA-S9-A6TV-01 16 58587700 58587700 G T CNOT1 Missense_Mutation p.H986N 0.40 tolerated(0.23) benign(0.002) TCGA-S9-A6TV-01 17 28405524 28405524 T C EFCAB5 Splice_Site p.X1009_splice 0.63 TCGA-S9-A6TV-01 17 35298051 35298051 G A LHX1 Missense_Mutation p.R181Q 0.50 deleterious(0) probably_damaging(0.979) TCGA-S9-A6TV-01 17 56439937 56439937 G A RNF43 Missense_Mutation p.R219C 0.11 deleterious(0) probably_damaging(1) TCGA-S9-A6TV-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.90 deleterious(0) probably_damaging(0.998) TCGA-S9-A6TV-01 19 19770501 19770501 C T ATP13A1 Missense_Mutation p.V196M 0.26 deleterious(0.02) possibly_damaging(0.784) TCGA-S9-A6TV-01 19 877046 877046 C A MED16 Missense_Mutation p.Q496H 0.82 tolerated(0.19) possibly_damaging(0.522) TCGA-S9-A6TV-01 1 153012733 153012733 C T SPRR2D Silent p.P30P 0.48 TCGA-S9-A6TV-01 1 237777667 237777667 G A RYR2 Missense_Mutation p.G1747S 0.38 benign(0.368) TCGA-S9-A6TV-01 20 4771250 4771250 C T RASSF2 Silent p.R128R 0.33 TCGA-S9-A6TV-01 21 36088832 36088832 A C CLIC6 3'UTR 0.46 TCGA-S9-A6TV-01 2 159166120 159166120 C T CCDC148 Missense_Mutation p.R312H 0.05 tolerated(0.67) benign(0) TCGA-S9-A6TV-01 2 198051803 198051803 C T ANKRD44 Missense_Mutation p.G19S 0.36 tolerated(0.12) probably_damaging(0.987) TCGA-S9-A6TV-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6TV-01 2 97492662 97492662 T C CNNM3 Missense_Mutation p.Y488H 0.50 tolerated(0.51) benign(0.001) TCGA-S9-A6TV-01 3 142177878 142177878 G A ATR Silent p.D2475D 0.17 TCGA-S9-A6TV-01 3 48445969 48445969 G A PLXNB1 Missense_Mutation p.T2111M 0.43 tolerated(0.08) possibly_damaging(0.694) TCGA-S9-A6TV-01 4 11401181 11401181 G A HS3ST1 Missense_Mutation p.S150L 0.44 tolerated(0.05) possibly_damaging(0.868) TCGA-S9-A6TV-01 4 170990336 170990336 T A AADAT Missense_Mutation p.I256F 0.42 deleterious(0) probably_damaging(0.956) TCGA-S9-A6TV-01 4 183710374 183710374 G A TENM3 Silent p.L1811L 0.45 TCGA-S9-A6TV-01 5 58272256 58272256 T C PDE4D Missense_Mutation p.D584G 0.47 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-S9-A6TV-01 7 120979236 120979236 G A WNT16 Missense_Mutation p.R312H 0.43 deleterious(0.02) probably_damaging(0.993) TCGA-S9-A6TV-01 7 127637917 127637917 C T SND1 Intron 0.04 TCGA-S9-A6TV-01 7 150762020 150762020 C T SLC4A2 Missense_Mutation p.A182V 0.26 tolerated(0.36) benign(0.018) TCGA-S9-A6TV-01 7 23792357 23792357 G A STK31 Missense_Mutation p.D347N 0.09 tolerated(0.16) benign(0.009) TCGA-S9-A6TV-01 8 103269902 103269902 C T UBR5 Nonsense_Mutation p.W2715* 0.07 TCGA-S9-A6TV-01 9 27062702 27062702 G A IFT74 Missense_Mutation p.V591M 0.38 tolerated(0.28) benign(0.397) TCGA-S9-A6TV-01 9 34623537 34623537 C T ARID3C Silent p.L250L 0.54 TCGA-S9-A6TV-01 9 78925604 78925604 T C PCSK5 Missense_Mutation p.S1214P 0.39 tolerated(0.19) benign(0.009) TCGA-S9-A6TV-01 9 84608365 84608365 G A SPATA31D1 Missense_Mutation p.V994I 0.20 tolerated(0.1) benign(0) TCGA-S9-A6TV-01 X 148038126 148038126 G T AFF2 Missense_Mutation p.G851C 0.77 deleterious(0.01) probably_damaging(1) TCGA-S9-A6TV-01 X 76829787 76829787 C G ATRX Missense_Mutation p.R2085P 0.84 probably_damaging(1) TCGA-S9-A6TW-01 10 17142012 17142012 T C CUBN Missense_Mutation p.Q586R 0.24 tolerated(0.33) benign(0.005) TCGA-S9-A6TW-01 10 89717661 89717661 C G PTEN Nonsense_Mutation p.S229* 0.11 TCGA-S9-A6TW-01 11 5364396 5364396 C T OR51B5 Missense_Mutation p.R120H 0.47 deleterious(0.03) benign(0.226) TCGA-S9-A6TW-01 11 63988554 63988554 C T FERMT3 Missense_Mutation p.R542C 0.39 deleterious(0) probably_damaging(0.977) TCGA-S9-A6TW-01 12 112605213 112605215 AGA - HECTD4 In_Frame_Del p.F4001del 0.20 TCGA-S9-A6TW-01 12 14804947 14804947 A G GUCY2C Silent p.D517D 0.26 TCGA-S9-A6TW-01 12 53452396 53452398 CTC - TENC1 In_Frame_Del p.S434del 0.28 TCGA-S9-A6TW-01 12 63195840 63195840 G A PPM1H Missense_Mutation p.T171M 0.27 tolerated(0.13) benign(0.046) TCGA-S9-A6TW-01 14 24791834 24791834 C T ADCY4 Missense_Mutation p.R808H 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-S9-A6TW-01 14 77491724 77491726 AGG - IRF2BPL 3'UTR 0.42 TCGA-S9-A6TW-01 15 72020942 72020942 G T THSD4 Missense_Mutation p.R471L 0.10 tolerated(0.35) benign(0.175) TCGA-S9-A6TW-01 16 2321813 2321813 G A RNPS1 5'Flank 0.43 TCGA-S9-A6TW-01 17 72576247 72576247 G A CD300LD Missense_Mutation p.P160L 0.19 tolerated(0.91) benign(0) TCGA-S9-A6TW-01 17 8526520 8526521 AA - MYH10 Frame_Shift_Del p.F15Cfs*14 0.21 TCGA-S9-A6TW-01 19 367082 367082 C T THEG Missense_Mutation p.R299H 0.27 deleterious(0) probably_damaging(0.995) TCGA-S9-A6TW-01 19 42791390 42791391 - G CIC Frame_Shift_Ins p.A151Gfs*9 0.63 TCGA-S9-A6TW-01 19 51995064 51995064 G A SIGLEC12 Missense_Mutation p.P540L 0.50 tolerated(0.24) benign(0.207) TCGA-S9-A6TW-01 19 52090031 52090031 G T ZNF175 Missense_Mutation p.E149D 0.07 deleterious(0.03) benign(0.007) TCGA-S9-A6TW-01 1 210796935 210796935 G A HHAT Silent p.S438S 0.32 TCGA-S9-A6TW-01 1 67109265 67109267 GAA - SGIP1 In_Frame_Del p.E112del 0.33 TCGA-S9-A6TW-01 20 33225719 33225719 G - PIGU Frame_Shift_Del p.P130Lfs*9 0.28 TCGA-S9-A6TW-01 20 58533651 58533651 G A CDH26 5'UTR 0.39 TCGA-S9-A6TW-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6TW-01 3 178916938 178916940 GAA - PIK3CA In_Frame_Del p.E110del 0.42 TCGA-S9-A6TW-01 3 178921551 178921551 A T PIK3CA Missense_Mutation p.N345Y 0.28 deleterious(0) probably_damaging(1) TCGA-S9-A6TW-01 3 33450750 33450750 T C UBP1 Missense_Mutation p.Y266C 0.26 tolerated(0.16) probably_damaging(0.982) TCGA-S9-A6TW-01 3 50368774 50368774 C T RASSF1 Silent p.G293G 0.30 TCGA-S9-A6TW-01 3 9754444 9754444 G A CPNE9 Silent p.L159L 0.31 TCGA-S9-A6TW-01 6 118606389 118606389 A G SLC35F1 Missense_Mutation p.Y297C 0.29 deleterious(0) probably_damaging(0.993) TCGA-S9-A6TW-01 6 135754276 135754276 C T AHI1 Missense_Mutation p.D719N 0.27 deleterious(0) probably_damaging(0.987) TCGA-S9-A6TW-01 6 15374364 15374364 T G JARID2 Missense_Mutation p.I21S 0.32 deleterious(0) probably_damaging(0.991) TCGA-S9-A6TW-01 7 122755543 122755543 C T SLC13A1 3'UTR 0.24 TCGA-S9-A6TW-01 7 135078909 135078909 T C CNOT4 Missense_Mutation p.N463S 0.28 tolerated(0.29) benign(0.229) TCGA-S9-A6TW-01 7 2255588 2255588 G A MAD1L1 Silent p.L286L 0.34 TCGA-S9-A6TW-01 8 80976789 80976791 TCT - TPD52 In_Frame_Del p.E59del 0.35 TCGA-S9-A6TW-01 9 119249746 119249746 G C ASTN2 Missense_Mutation p.S1079C 0.35 deleterious(0.01) unknown(0) TCGA-S9-A6TW-01 9 124080948 124080948 G A GSN Silent p.S378S 0.15 TCGA-S9-A6TW-01 9 136230378 136230380 CTT - SURF4 In_Frame_Del p.K267del 0.15 TCGA-S9-A6TW-01 9 139008643 139008643 C T C9orf69 Missense_Mutation p.R35H 0.06 deleterious(0.01) possibly_damaging(0.793) TCGA-S9-A6TW-01 9 74489817 74489819 AGA - ABHD17B In_Frame_Del p.S60del 0.14 TCGA-S9-A6TW-01 X 129149824 129149824 G T BCORL1 Missense_Mutation p.V1026F 0.54 possibly_damaging(0.759) TCGA-S9-A6TX-01 10 26377303 26377303 C T MYO3A Silent p.L511L 0.39 TCGA-S9-A6TX-01 11 57087848 57087848 C T TNKS1BP1 Missense_Mutation p.A145T 0.39 deleterious(0) probably_damaging(0.998) TCGA-S9-A6TX-01 11 67077742 67077742 A G SSH3 Missense_Mutation p.R539G 0.05 deleterious(0) possibly_damaging(0.587) TCGA-S9-A6TX-01 11 67433014 67433014 G A ALDH3B2 Missense_Mutation p.R150C 0.27 deleterious(0.01) probably_damaging(1) TCGA-S9-A6TX-01 12 113403651 113403651 C T OAS3 Missense_Mutation p.R836W 0.40 deleterious(0) probably_damaging(0.983) TCGA-S9-A6TX-01 13 97639064 97639064 A C OXGR1 Missense_Mutation p.V317G 0.34 deleterious(0.01) benign(0.157) TCGA-S9-A6TX-01 15 40564858 40564858 G A PAK6 Missense_Mutation p.R431H 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-S9-A6TX-01 16 19505646 19505646 A C TMC5 Missense_Mutation p.K963N 0.07 deleterious(0.01) benign(0.018) TCGA-S9-A6TX-01 16 21145636 21145636 C T DNAH3 Silent p.E342E 0.40 TCGA-S9-A6TX-01 16 28925751 28925751 T C RABEP2 Missense_Mutation p.I234V 0.37 tolerated(0.21) benign(0.04) TCGA-S9-A6TX-01 16 67211953 67211953 C T KIAA0895L Missense_Mutation p.R404H 0.33 deleterious(0) probably_damaging(0.999) TCGA-S9-A6TX-01 16 82892059 82892059 G A CDH13 Silent p.E93E 0.15 TCGA-S9-A6TX-01 17 1636832 1636832 C T WDR81 Missense_Mutation p.R1501W 0.35 deleterious(0) benign(0.019) TCGA-S9-A6TX-01 17 42268191 42268191 G A TMUB2 Missense_Mutation p.V309I 0.10 tolerated(0.25) probably_damaging(0.996) TCGA-S9-A6TX-01 17 7350230 7350230 G C CHRNB1 Missense_Mutation p.V108L 0.20 tolerated(0.18) possibly_damaging(0.531) TCGA-S9-A6TX-01 19 42796882 42796883 - C CIC Frame_Shift_Ins p.S1117Kfs*34 0.52 TCGA-S9-A6TX-01 19 44890648 44890648 T C ZNF285 Missense_Mutation p.R587G 0.09 tolerated_low_confidence(0.17) benign(0.011) TCGA-S9-A6TX-01 19 56223200 56223200 A G NLRP9 Silent p.L937L 0.10 TCGA-S9-A6TX-01 19 6697472 6697472 C T C3 Silent p.S893S 0.10 TCGA-S9-A6TX-01 1 109193008 109193008 G A HENMT1 Missense_Mutation p.A194V 0.64 deleterious(0) probably_damaging(0.952) TCGA-S9-A6TX-01 1 160788073 160788073 A G LY9 Missense_Mutation p.I470V 0.04 tolerated(0.41) benign(0.194) TCGA-S9-A6TX-01 1 33411115 33411115 C T RNF19B Missense_Mutation p.G422S 0.48 deleterious(0.03) probably_damaging(0.998) TCGA-S9-A6TX-01 1 42905687 42905687 C T ZMYND12 Missense_Mutation p.R145Q 0.68 tolerated(0.3) benign(0.004) TCGA-S9-A6TX-01 1 78425910 78425910 T - FUBP1 Frame_Shift_Del p.N512Mfs*153 0.40 TCGA-S9-A6TX-01 20 42088683 42088683 G T SRSF6 Missense_Mutation p.R131L 0.06 deleterious(0) probably_damaging(0.999) TCGA-S9-A6TX-01 2 105858678 105858678 C T GPR45 Silent p.G121G 0.30 TCGA-S9-A6TX-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6TX-01 2 231249985 231249985 G A SP140L Silent p.A250A 0.42 TCGA-S9-A6TX-01 2 237240097 237240097 G A IQCA1 Missense_Mutation p.R760W 0.05 tolerated(0.18) possibly_damaging(0.489) TCGA-S9-A6TX-01 2 32476004 32476004 C T NLRC4 Missense_Mutation p.R310Q 0.06 tolerated(0.28) benign(0.028) TCGA-S9-A6TX-01 2 73868602 73868602 C T NAT8 Missense_Mutation p.A52T 0.41 tolerated(0.42) benign(0.029) TCGA-S9-A6TX-01 3 111860073 111860075 TCT - SLC9C1 3'UTR 0.31 TCGA-S9-A6TX-01 3 41268826 41268826 C T CTNNB1 Missense_Mutation p.P355L 0.39 deleterious(0.01) benign(0.299) TCGA-S9-A6TX-01 4 42524203 42524203 C T ATP8A1 Missense_Mutation p.E641K 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-S9-A6TX-01 4 74000833 74000833 C T ANKRD17 Splice_Site p.X1078_splice 0.45 TCGA-S9-A6TX-01 4 99338034 99338034 T C RAP1GDS1 Missense_Mutation p.L302P 0.07 deleterious(0) possibly_damaging(0.877) TCGA-S9-A6TX-01 6 22297291 22297291 T C PRL 5'UTR 0.38 TCGA-S9-A6TX-01 6 52656723 52656723 C T GSTA1 Missense_Mutation p.G201D 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-S9-A6TX-01 7 126079206 126079206 T C GRM8 Silent p.T898T 0.41 TCGA-S9-A6TX-01 7 142639988 142639988 C T KEL Missense_Mutation p.V639I 0.15 tolerated(0.57) benign(0.004) TCGA-S9-A6TX-01 7 27150357 27150357 G A HOXA3 5'UTR 0.19 TCGA-S9-A6TX-01 7 27204770 27204770 G C HOXA9 Missense_Mutation p.P103A 0.36 tolerated(0.62) probably_damaging(0.989) TCGA-S9-A6TX-01 7 92730801 92730801 T C SAMD9 Missense_Mutation p.N1537S 0.23 tolerated(0.31) benign(0.088) TCGA-S9-A6TX-01 8 124664296 124664296 C T KLHL38 Missense_Mutation p.G291R 0.19 deleterious(0) probably_damaging(1) TCGA-S9-A6TX-01 8 26196411 26196411 A G PPP2R2A Missense_Mutation p.I40V 0.39 tolerated(0.15) benign(0.07) TCGA-S9-A6TX-01 X 119389238 119389239 TG - ZBTB33 Frame_Shift_Del p.V657Nfs*6 0.14 TCGA-S9-A6TY-01 10 69669183 69669183 A G SIRT1 Silent p.P447P 0.41 TCGA-S9-A6TY-01 11 11400788 11400788 C T GALNT18 Missense_Mutation p.E207K 0.07 tolerated(0.2) benign(0.001) TCGA-S9-A6TY-01 11 56043676 56043676 C T OR5T1 Missense_Mutation p.H188Y 0.19 deleterious(0) benign(0.443) TCGA-S9-A6TY-01 11 62401811 62401811 T C GANAB Missense_Mutation p.I199M 0.26 tolerated(0.26) benign(0.007) TCGA-S9-A6TY-01 12 99097198 99097198 A G APAF1 Missense_Mutation p.H839R 0.46 tolerated(0.4) benign(0.005) TCGA-S9-A6TY-01 13 113803380 113803380 C T F10 Missense_Mutation p.A339V 0.04 tolerated(1) probably_damaging(0.956) TCGA-S9-A6TY-01 15 39885372 39885372 G A THBS1 Missense_Mutation p.R980H 0.40 tolerated(0.13) probably_damaging(1) TCGA-S9-A6TY-01 15 41105573 41105573 C T ZFYVE19 Silent p.D356D 0.44 TCGA-S9-A6TY-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-S9-A6TY-01 16 8988966 8988966 C T USP7 Silent p.E987E 0.04 TCGA-S9-A6TY-01 17 7012098 7012098 C T ASGR2 Silent p.G78G 0.26 TCGA-S9-A6TY-01 18 21181162 21181162 C A ANKRD29 3'UTR 0.35 TCGA-S9-A6TY-01 18 47810101 47810101 G A CXXC1 Missense_Mutation p.R504C 0.42 deleterious(0) probably_damaging(0.994) TCGA-S9-A6TY-01 18 61262359 61262359 A G SERPINB13 Missense_Mutation p.K238E 0.21 deleterious(0.03) possibly_damaging(0.755) TCGA-S9-A6TY-01 19 7975888 7975888 G A MAP2K7 Silent p.L233L 0.24 TCGA-S9-A6TY-01 1 184853821 184853821 C G FAM129A Missense_Mutation p.D183H 0.34 deleterious(0.04) possibly_damaging(0.785) TCGA-S9-A6TY-01 21 19770581 19770581 T A TMPRSS15 Missense_Mutation p.N71Y 0.69 deleterious(0.01) possibly_damaging(0.905) TCGA-S9-A6TY-01 22 41223196 41223196 T C ST13 Silent p.G295G 0.38 TCGA-S9-A6TY-01 2 230453157 230453157 C T DNER Silent p.A211A 0.33 TCGA-S9-A6TY-01 2 95940490 95940490 C T PROM2 Nonsense_Mutation p.R53* 0.03 TCGA-S9-A6TY-01 3 118865135 118865135 C T C3orf30 Silent p.D33D 0.38 TCGA-S9-A6TY-01 3 173997179 173997179 A G NLGN1 Missense_Mutation p.H463R 0.18 tolerated(0.1) probably_damaging(0.969) TCGA-S9-A6TY-01 3 2613106 2613106 G C CNTN4 5'UTR 0.31 TCGA-S9-A6TY-01 5 141693866 141693866 G A SPRY4 Missense_Mutation p.R293C 0.12 deleterious(0) probably_damaging(0.999) TCGA-S9-A6TY-01 8 21938322 21938322 G A DMTN Missense_Mutation p.E322K 0.56 tolerated(0.19) benign(0.211) TCGA-S9-A6TY-01 9 113171073 113171073 C T SVEP1 Silent p.P2269P 0.43 TCGA-S9-A6TY-01 9 136915518 136915518 G C BRD3 Missense_Mutation p.P231R 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-S9-A6TZ-01 11 105845182 105845182 G C GRIA4 Intron 0.05 TCGA-S9-A6TZ-01 11 10789666 10789666 C G CTR9 Missense_Mutation p.L640V 0.43 deleterious(0) probably_damaging(0.952) TCGA-S9-A6TZ-01 11 130079712 130079712 G A ST14 Silent p.G854G 0.04 TCGA-S9-A6TZ-01 11 6650970 6650970 G A DCHS1 Silent p.V1656V 0.35 TCGA-S9-A6TZ-01 11 68747597 68747597 G A MRGPRD Silent p.L287L 0.17 TCGA-S9-A6TZ-01 11 9450411 9450411 C T IPO7 Intron 0.06 TCGA-S9-A6TZ-01 13 32912670 32912670 C T BRCA2 Missense_Mutation p.A1393V 0.39 tolerated(1) benign(0) TCGA-S9-A6TZ-01 13 93879733 93879733 G T GPC6 Silent p.V8V 0.12 TCGA-S9-A6TZ-01 14 77765887 77765887 G A POMT2 Silent p.H278H 0.12 TCGA-S9-A6TZ-01 15 57523394 57523397 TCCT AGG TCF12 Frame_Shift_Del p.P209Gfs*36 0.35 TCGA-S9-A6TZ-01 16 21212828 21212828 A G ZP2 Missense_Mutation p.F519S 0.05 deleterious(0.01) benign(0.348) TCGA-S9-A6TZ-01 17 25937180 25937180 G A KSR1 Silent p.E656E 0.42 TCGA-S9-A6TZ-01 17 72832755 72832755 G A TMEM104 Missense_Mutation p.V474M 0.47 deleterious(0) probably_damaging(0.994) TCGA-S9-A6TZ-01 17 7412932 7412932 A T POLR2A Missense_Mutation p.D1265V 0.10 possibly_damaging(0.716) TCGA-S9-A6TZ-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.13 deleterious(0) probably_damaging(1) TCGA-S9-A6TZ-01 19 36268615 36268615 G A ARHGAP33 Silent p.G25G 0.30 TCGA-S9-A6TZ-01 19 50031918 50031918 A G RCN3 Silent p.E63E 0.60 TCGA-S9-A6TZ-01 1 10710809 10710809 G A CASZ1 Silent p.N940N 0.25 TCGA-S9-A6TZ-01 1 114438891 114438891 T A AP4B1 Missense_Mutation p.Y500F 0.04 deleterious(0.05) benign(0.094) TCGA-S9-A6TZ-01 1 180885464 180885464 A G KIAA1614 Silent p.V75V 0.39 TCGA-S9-A6TZ-01 1 198668788 198668788 G A PTPRC Missense_Mutation p.A132T 0.03 tolerated(0.15) benign(0.027) TCGA-S9-A6TZ-01 20 62701881 62701881 A T TCEA2 Missense_Mutation p.M238L 0.37 tolerated(0.9) benign(0.013) TCGA-S9-A6TZ-01 2 170367045 170367045 A G KLHL41 Missense_Mutation p.K253E 0.06 tolerated(0.1) benign(0.013) TCGA-S9-A6TZ-01 2 18768782 18768782 C T NT5C1B Missense_Mutation p.R36H 0.38 deleterious_low_confidence(0.05) probably_damaging(0.948) TCGA-S9-A6TZ-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6TZ-01 4 100266127 100266127 C G ADH1C Silent p.V153V 0.08 TCGA-S9-A6TZ-01 4 37591775 37591775 T C C4orf19 Missense_Mutation p.L33P 0.03 deleterious(0) probably_damaging(0.948) TCGA-S9-A6TZ-01 4 68938111 68938111 C T TMPRSS11F Silent p.K148K 0.15 TCGA-S9-A6TZ-01 4 69962319 69962319 G T UGT2B7 Silent p.L27L 0.10 TCGA-S9-A6TZ-01 5 1034967 1034967 G A NKD2 Missense_Mutation p.V175I 0.23 deleterious(0) probably_damaging(0.988) TCGA-S9-A6TZ-01 5 43649290 43649290 C G NNT Missense_Mutation p.L496V 0.38 tolerated(0.56) benign(0) TCGA-S9-A6TZ-01 6 135314939 135314939 C T HBS1L Missense_Mutation p.G347D 0.11 deleterious(0) probably_damaging(0.936) TCGA-S9-A6TZ-01 6 51512879 51512879 G C PKHD1 Missense_Mutation p.P3783R 0.32 deleterious(0) benign(0.352) TCGA-S9-A6TZ-01 7 119915148 119915148 C T KCND2 Silent p.T154T 0.05 TCGA-S9-A6TZ-01 9 139752161 139752161 A G MAMDC4 Missense_Mutation p.T793A 0.12 tolerated(0.63) benign(0.002) TCGA-S9-A6TZ-01 9 35618218 35618218 C A CD72 Splice_Site p.X28_splice 0.42 TCGA-S9-A6TZ-01 X 103495451 103495451 G A ESX1 Missense_Mutation p.P227S 0.06 deleterious(0.02) possibly_damaging(0.857) TCGA-S9-A6TZ-01 X 119210961 119210961 G A RHOXF2B Silent p.A124A 0.44 TCGA-S9-A6TZ-01 X 119674329 119674329 A T CUL4B Missense_Mutation p.I529K 0.06 deleterious(0) probably_damaging(0.965) TCGA-S9-A6TZ-01 X 120009261 120009261 C T CT47B1 Silent p.G88G 0.29 TCGA-S9-A6TZ-01 X 131348314 131348314 G A RAP2C Missense_Mutation p.T145I 0.26 deleterious(0) possibly_damaging(0.498) TCGA-S9-A6TZ-01 X 138643011 138643011 G A F9 Missense_Mutation p.A279T 0.25 tolerated(0.06) possibly_damaging(0.77) TCGA-S9-A6TZ-01 X 148584864 148584864 C T IDS Silent p.S132S 0.33 TCGA-S9-A6TZ-01 X 148797890 148797890 G C MAGEA11 Missense_Mutation p.M248I 0.04 tolerated(0.09) benign(0.415) TCGA-S9-A6TZ-01 X 9863274 9863274 C A SHROOM2 Missense_Mutation p.S442R 0.06 deleterious(0.02) benign(0.014) TCGA-S9-A6U0-01 10 106602566 106602566 C T SORCS3 Missense_Mutation p.T215M 0.32 deleterious(0) probably_damaging(0.987) TCGA-S9-A6U0-01 10 35320290 35320290 G A CUL2 Missense_Mutation p.R461C 0.29 deleterious(0) probably_damaging(0.995) TCGA-S9-A6U0-01 10 89692877 89692877 G A PTEN Missense_Mutation p.A121T 0.23 deleterious(0.02) probably_damaging(0.993) TCGA-S9-A6U0-01 11 102647101 102647101 G A MMP10 Missense_Mutation p.S281L 0.19 tolerated(0.35) benign(0) TCGA-S9-A6U0-01 11 33564344 33564344 C T KIAA1549L Missense_Mutation p.A115V 0.19 tolerated_low_confidence(0.2) benign(0.002) TCGA-S9-A6U0-01 11 47282968 47282968 C T NR1H3 Missense_Mutation p.R226W 0.19 tolerated(0.12) benign(0.001) TCGA-S9-A6U0-01 12 109865271 109865271 A T MYO1H Intron 0.21 TCGA-S9-A6U0-01 12 56335069 56335069 G A DGKA Missense_Mutation p.V379I 0.23 deleterious(0.02) possibly_damaging(0.629) TCGA-S9-A6U0-01 13 73649880 73649880 C T KLF5 Silent p.C410C 0.16 TCGA-S9-A6U0-01 14 23346491 23346491 A G LRP10 Missense_Mutation p.T633A 0.21 tolerated(0.22) benign(0.001) TCGA-S9-A6U0-01 15 44949465 44949465 C T SPG11 Missense_Mutation p.V233I 0.18 tolerated(0.15) possibly_damaging(0.542) TCGA-S9-A6U0-01 15 56686955 56686955 G A TEX9 Missense_Mutation p.E251K 0.33 deleterious(0) possibly_damaging(0.888) TCGA-S9-A6U0-01 15 90246288 90246288 G A WDR93 Silent p.A137A 0.24 TCGA-S9-A6U0-01 16 31374348 31374348 C T ITGAX Silent p.Y484Y 0.28 TCGA-S9-A6U0-01 17 10209888 10209888 C T MYH13 Missense_Mutation p.R1785Q 0.23 deleterious(0) benign(0.379) TCGA-S9-A6U0-01 17 10216566 10216566 C T MYH13 Missense_Mutation p.A1364T 0.22 tolerated(0.07) benign(0.282) TCGA-S9-A6U0-01 17 14095349 14095349 G C COX10 Missense_Mutation p.G247R 0.19 deleterious(0) probably_damaging(1) TCGA-S9-A6U0-01 17 33464147 33464147 G T NLE1 Missense_Mutation p.T234N 0.17 tolerated(0.57) benign(0.001) TCGA-S9-A6U0-01 17 33464148 33464148 T A NLE1 Missense_Mutation p.T234S 0.18 tolerated(0.91) benign(0.002) TCGA-S9-A6U0-01 18 9887569 9887569 G A TXNDC2 Missense_Mutation p.E365K 0.27 tolerated(0.61) benign(0.124) TCGA-S9-A6U0-01 19 43439576 43439576 C T PSG7 Missense_Mutation p.R137H 0.20 tolerated(1) benign(0.001) TCGA-S9-A6U0-01 19 9226075 9226075 C T OR7G1 Missense_Mutation p.R122H 0.16 deleterious(0.03) benign(0.027) TCGA-S9-A6U0-01 1 153317834 153317834 G A PGLYRP4 Missense_Mutation p.T55M 0.28 tolerated(0.68) benign(0) TCGA-S9-A6U0-01 1 158648254 158648254 C T SPTA1 Missense_Mutation p.R250H 0.26 tolerated(0.73) benign(0.002) TCGA-S9-A6U0-01 1 237947854 237947854 C T RYR2 Missense_Mutation p.T4281M 0.14 benign(0.003) TCGA-S9-A6U0-01 20 17462502 17462502 G A PCSK2 Nonsense_Mutation p.W568* 0.30 TCGA-S9-A6U0-01 21 45547815 45547815 C T PWP2 Missense_Mutation p.R715C 0.25 deleterious(0) possibly_damaging(0.762) TCGA-S9-A6U0-01 2 207169615 207169615 T A ZDBF2 Silent p.P121P 0.11 TCGA-S9-A6U0-01 2 74042529 74042529 C T C2orf78 Silent p.P393P 0.20 TCGA-S9-A6U0-01 3 178947865 178947865 G A PIK3CA Missense_Mutation p.G914R 0.20 deleterious(0) possibly_damaging(0.641) TCGA-S9-A6U0-01 3 189586471 189586471 G A TP63 Silent p.S365S 0.21 TCGA-S9-A6U0-01 4 70620861 70620861 T C SULT1B1 Silent p.A25A 0.20 TCGA-S9-A6U0-01 4 79432471 79432471 G T FRAS1 Missense_Mutation p.C3275F 0.09 benign(0.349) TCGA-S9-A6U0-01 4 91230726 91230726 A G CCSER1 Missense_Mutation p.T431A 0.19 tolerated(0.27) benign(0.004) TCGA-S9-A6U0-01 5 101631621 101631621 C T SLCO4C1 Missense_Mutation p.V116I 0.21 tolerated(0.17) benign(0.025) TCGA-S9-A6U0-01 5 127641280 127641280 T A FBN2 Missense_Mutation p.D1866V 0.05 tolerated(0.12) possibly_damaging(0.747) TCGA-S9-A6U0-01 5 140175891 140175891 G A PCDHA2 Missense_Mutation p.V448M 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.816) TCGA-S9-A6U0-01 5 178559266 178559266 A T ADAMTS2 Missense_Mutation p.L752H 0.11 tolerated(0.21) probably_damaging(0.996) TCGA-S9-A6U0-01 7 21640404 21640404 C T DNAH11 Silent p.H1037H 0.17 TCGA-S9-A6U0-01 7 7495728 7495728 C T COL28A1 Missense_Mutation p.V440M 0.20 tolerated(0.17) benign(0.028) TCGA-S9-A6U0-01 8 144297321 144297321 C T GPIHBP1 Silent p.S161S 0.24 TCGA-S9-A6U0-01 8 41791277 41791277 C A KAT6A Missense_Mutation p.Q1487H 0.15 unknown(0) TCGA-S9-A6U0-01 9 113141771 113141771 C T SVEP1 Missense_Mutation p.V3422I 0.25 benign(0.044) TCGA-S9-A6U0-01 X 117960276 117960276 A G ZCCHC12 Missense_Mutation p.K357E 0.07 deleterious(0.04) benign(0.187) TCGA-S9-A6U0-01 X 125299212 125299212 G T DCAF12L2 Silent p.A232A 0.41 TCGA-S9-A6U0-01 X 47978955 47978955 G A SSX6 RNA 0.41 TCGA-S9-A6U1-01 10 121663645 121663645 C T SEC23IP Silent p.Y319Y 0.33 TCGA-S9-A6U1-01 10 96997560 96997560 G A PDLIM1 3'UTR 0.43 TCGA-S9-A6U1-01 11 60233595 60233595 A C MS4A1 Missense_Mutation p.T180P 0.07 tolerated(0.29) possibly_damaging(0.567) TCGA-S9-A6U1-01 11 62744652 62744652 C T SLC22A6 Nonsense_Mutation p.W523* 0.03 TCGA-S9-A6U1-01 11 77629973 77629973 G C INTS4 Missense_Mutation p.Q606E 0.38 tolerated(0.87) benign(0.005) TCGA-S9-A6U1-01 12 52310011 52310011 G T ACVRL1 Missense_Mutation p.V414L 0.06 tolerated(0.1) benign(0.138) TCGA-S9-A6U1-01 12 56815192 56815192 C T TIMELESS Silent p.V937V 0.05 TCGA-S9-A6U1-01 13 98086715 98086715 C T RAP2A 5'UTR 0.08 TCGA-S9-A6U1-01 14 24974844 24974844 G A CMA1 Silent p.L208L 0.05 TCGA-S9-A6U1-01 14 38679188 38679188 C G SSTR1 Silent p.T198T 0.07 TCGA-S9-A6U1-01 14 75928230 75928230 G A JDP2 Silent p.Q112Q 0.17 TCGA-S9-A6U1-01 15 102346232 102346232 A G OR4F6 Missense_Mutation p.I104V 0.03 tolerated_low_confidence(0.05) benign(0.018) TCGA-S9-A6U1-01 15 48057301 48057301 C T SEMA6D Intron 0.37 TCGA-S9-A6U1-01 15 74625122 74625122 G A CCDC33 Missense_Mutation p.R625Q 0.06 deleterious(0.03) benign(0.211) TCGA-S9-A6U1-01 16 70834803 70834803 T C VAC14 Translation_Start_Site p.M1? 0.04 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-S9-A6U1-01 16 70918016 70918016 G A HYDIN Silent p.A3262A 0.27 TCGA-S9-A6U1-01 17 43226400 43226402 AGA - HEXIM1 5'UTR 0.36 TCGA-S9-A6U1-01 18 28919761 28919761 G A DSG1 Missense_Mutation p.G487D 0.05 tolerated(0.16) benign(0.002) TCGA-S9-A6U1-01 1 204214034 204214034 C A PLEKHA6 Silent p.V710V 0.23 TCGA-S9-A6U1-01 1 22030798 22030798 C T USP48 Silent p.V824V 0.36 TCGA-S9-A6U1-01 20 13850848 13850848 C T SEL1L2 Missense_Mutation p.G369D 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-S9-A6U1-01 22 17264884 17264884 A - XKR3 Frame_Shift_Del p.I335Mfs*19 0.46 TCGA-S9-A6U1-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.34 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-S9-A6U1-01 3 77526572 77526572 A G ROBO2 Silent p.R148R 0.07 TCGA-S9-A6U1-01 5 23522839 23522839 C T PRDM9 Missense_Mutation p.P243S 0.32 deleterious(0) possibly_damaging(0.46) TCGA-S9-A6U1-01 7 94054923 94054923 G A COL1A2 Missense_Mutation p.G928D 0.05 unknown(0) TCGA-S9-A6U1-01 X 131216554 131216554 C A FRMD7 Missense_Mutation p.V248L 0.03 tolerated(0.25) possibly_damaging(0.578) TCGA-S9-A6U1-01 X 76937477 76937480 TCTC - ATRX Frame_Shift_Del p.E1090Rfs*27 0.42 TCGA-S9-A6U1-01 X 99662844 99662844 G A PCDH19 Missense_Mutation p.S251L 0.26 deleterious(0) benign(0.055) TCGA-S9-A6U2-01 11 55944704 55944704 G A OR5J2 Missense_Mutation p.G204E 0.06 deleterious(0) possibly_damaging(0.783) TCGA-S9-A6U2-01 11 62677783 62677783 G A CHRM1 Missense_Mutation p.R264W 0.05 deleterious(0.02) benign(0) TCGA-S9-A6U2-01 11 65055248 65055248 G A POLA2 Silent p.T356T 0.44 TCGA-S9-A6U2-01 12 49420721 49420721 C T KMT2D Missense_Mutation p.A5010T 0.33 unknown(0) TCGA-S9-A6U2-01 12 52843396 52843396 G A KRT6B Missense_Mutation p.H312Y 0.37 deleterious(0.01) benign(0.058) TCGA-S9-A6U2-01 14 104643172 104643172 G A KIF26A Silent p.K1349K 0.36 TCGA-S9-A6U2-01 15 57565279 57565283 GAAGG CT TCF12 Nonsense_Mutation p.E599_E601delinsD* 0.49 TCGA-S9-A6U2-01 16 66954 66954 G A WASH4P Missense_Mutation p.P228S 0.24 deleterious(0) probably_damaging(1) TCGA-S9-A6U2-01 17 77078145 77078145 G A ENGASE Silent p.K346K 0.39 TCGA-S9-A6U2-01 19 42791715 42791715 C T CIC Missense_Mutation p.R201W 0.58 probably_damaging(1) TCGA-S9-A6U2-01 1 152280920 152280920 C T FLG Missense_Mutation p.G2148R 0.27 probably_damaging(0.953) TCGA-S9-A6U2-01 20 744337 744337 G A SLC52A3 Missense_Mutation p.A293V 0.31 tolerated(0.51) benign(0.002) TCGA-S9-A6U2-01 22 23656796 23656796 T C BCR Silent p.F1207F 0.35 TCGA-S9-A6U2-01 2 102964544 102964544 T C IL1RL1 Silent p.T370T 0.04 TCGA-S9-A6U2-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6U2-01 2 234905161 234905161 G C TRPM8 Splice_Site p.X1044_splice 0.31 TCGA-S9-A6U2-01 2 47382321 47382321 T C C2orf61 Missense_Mutation p.I24V 0.29 tolerated_low_confidence(1) benign(0) TCGA-S9-A6U2-01 3 178916929 178916929 G A PIK3CA Missense_Mutation p.G106S 0.39 deleterious(0.03) probably_damaging(1) TCGA-S9-A6U2-01 4 99393493 99393493 T C TSPAN5 3'UTR 0.36 TCGA-S9-A6U2-01 6 12161698 12161698 C T HIVEP1 Nonsense_Mutation p.R2172* 0.34 TCGA-S9-A6U2-01 6 144508016 144508016 C T STX11 Silent p.R84R 0.41 TCGA-S9-A6U2-01 6 31847952 31847952 G A EHMT2 Missense_Mutation p.A1181V 0.38 tolerated(0.07) probably_damaging(0.957) TCGA-S9-A6U2-01 6 38794044 38794044 T A DNAH8 Missense_Mutation p.N1103K 0.35 benign(0.002) TCGA-S9-A6U2-01 6 45073683 45073683 C T SUPT3H Silent p.V65V 0.26 TCGA-S9-A6U2-01 7 127013897 127013897 T C ZNF800 Missense_Mutation p.K498R 0.40 tolerated(1) benign(0.219) TCGA-S9-A6U2-01 7 48034064 48034064 C T SUN3 Missense_Mutation p.G237R 0.09 deleterious(0) probably_damaging(0.984) TCGA-S9-A6U2-01 8 106814286 106814286 A G ZFPM2 Missense_Mutation p.N659S 0.38 tolerated(0.81) benign(0) TCGA-S9-A6U2-01 8 117866545 117866545 C A RAD21 Missense_Mutation p.G367V 0.43 deleterious(0) probably_damaging(0.964) TCGA-S9-A6U2-01 8 125078688 125078688 G A FER1L6 Missense_Mutation p.R1192Q 0.40 tolerated(0.09) benign(0.004) TCGA-S9-A6U2-01 8 17815110 17815110 G T PCM1 Missense_Mutation p.E622D 0.12 tolerated(0.78) benign(0.014) TCGA-S9-A6U2-01 X 62857999 62857999 G T ARHGEF9 Missense_Mutation p.A487D 0.25 deleterious_low_confidence(0) benign(0.017) TCGA-S9-A6U2-01 X 64196258 64196258 A G ZC4H2 5'UTR 0.24 TCGA-S9-A6U5-01 10 115664616 115664616 C T NHLRC2 Missense_Mutation p.P582L 0.25 deleterious(0.04) benign(0.03) TCGA-S9-A6U5-01 11 132527130 132527130 T C OPCML Missense_Mutation p.I84M 0.13 deleterious(0.04) possibly_damaging(0.781) TCGA-S9-A6U5-01 12 6950780 6950780 C G GNB3 Missense_Mutation p.L30V 0.08 tolerated(0.05) benign(0.022) TCGA-S9-A6U5-01 13 110895028 110895028 T C COL4A1 Silent p.G46G 0.39 TCGA-S9-A6U5-01 14 23242852 23242856 CTCTC - SLC7A7 Frame_Shift_Del p.G500Dfs*10 0.28 TCGA-S9-A6U5-01 16 75276756 75276756 G A BCAR1 Missense_Mutation p.P128L 0.04 tolerated(0.12) benign(0.001) TCGA-S9-A6U5-01 17 1375272 1375272 C T MYO1C Silent p.G650G 0.06 TCGA-S9-A6U5-01 17 59560289 59560289 C T TBX4 Silent p.C350C 0.37 TCGA-S9-A6U5-01 19 42798857 42798858 CT - CIC Frame_Shift_Del p.F1478Sfs*35 0.50 TCGA-S9-A6U5-01 1 100194159 100194159 C T FRRS1 Missense_Mutation p.G299D 0.60 deleterious(0.02) probably_damaging(0.993) TCGA-S9-A6U5-01 1 110210764 110210764 C T GSTM2 Silent p.N9N 0.50 TCGA-S9-A6U5-01 1 167849749 167849749 G A ADCY10 Silent p.C373C 0.06 TCGA-S9-A6U5-01 1 197061121 197061121 A T ASPM Missense_Mutation p.N3120K 0.07 deleterious(0.03) benign(0.002) TCGA-S9-A6U5-01 1 32800637 32800637 G A MARCKSL1 Missense_Mutation p.P50L 0.70 deleterious(0.01) possibly_damaging(0.715) TCGA-S9-A6U5-01 20 44579160 44579162 CTT - ZNF335 In_Frame_Del p.K1088del 0.13 TCGA-S9-A6U5-01 21 45726635 45726635 G A PFKL Missense_Mutation p.E53K 0.40 deleterious(0) probably_damaging(0.996) TCGA-S9-A6U5-01 22 45601748 45601749 - G KIAA0930 Frame_Shift_Ins p.K93Qfs*10 0.45 TCGA-S9-A6U5-01 2 160980358 160980358 C T ITGB6 Missense_Mutation p.R642Q 0.12 tolerated(0.37) benign(0.001) TCGA-S9-A6U5-01 2 198950470 198950470 G A PLCL1 Silent p.G743G 0.08 TCGA-S9-A6U5-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6U5-01 2 90199079 90199079 C A IGKV1D-12 Silent p.V80V 0.68 TCGA-S9-A6U5-01 3 195512148 195512148 G C MUC4 Missense_Mutation p.D2101E 0.18 unknown(0) TCGA-S9-A6U5-01 4 157771503 157771503 T C PDGFC Missense_Mutation p.R62G 0.46 tolerated(0.11) benign(0.006) TCGA-S9-A6U5-01 4 41750611 41750611 T C PHOX2B Missense_Mutation p.Y6C 0.12 deleterious(0) probably_damaging(0.993) TCGA-S9-A6U5-01 4 88898248 88898248 A T SPP1 Missense_Mutation p.Q31L 0.33 tolerated(0.34) possibly_damaging(0.6) TCGA-S9-A6U5-01 5 24487576 24487580 AAATA - CDH10 3'UTR 0.33 TCGA-S9-A6U5-01 8 145556985 145556985 G A SCRT1 Silent p.H303H 0.31 TCGA-S9-A6U5-01 9 139413070 139413072 AGA - NOTCH1 In_Frame_Del p.F357del 0.35 TCGA-S9-A6U6-01 10 3824266 3824266 T C KLF6 Missense_Mutation p.I81M 0.04 tolerated(0.18) benign(0.01) TCGA-S9-A6U6-01 11 105769151 105769151 A G GRIA4 Missense_Mutation p.K295E 0.15 tolerated(0.05) benign(0.358) TCGA-S9-A6U6-01 11 17522639 17522639 A C USH1C Missense_Mutation p.V780G 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-S9-A6U6-01 11 49179537 49179537 T C FOLH1 Missense_Mutation p.K500R 0.12 tolerated(0.51) benign(0.044) TCGA-S9-A6U6-01 11 76371819 76371819 G A LRRC32 Missense_Mutation p.S273F 0.14 deleterious(0) probably_damaging(0.993) TCGA-S9-A6U6-01 12 120574422 120574422 C T GCN1L1 Missense_Mutation p.A2298T 0.32 probably_damaging(0.998) TCGA-S9-A6U6-01 12 27908561 27908561 C G MRPS35 3'UTR 0.62 TCGA-S9-A6U6-01 12 48723148 48723148 C T H1FNT Missense_Mutation p.A25V 0.09 tolerated(0.29) possibly_damaging(0.873) TCGA-S9-A6U6-01 13 46919668 46919668 C T KIAA0226L Missense_Mutation p.D567N 0.17 deleterious(0) probably_damaging(1) TCGA-S9-A6U6-01 14 23355459 23355459 T A REM2 Intron 0.17 TCGA-S9-A6U6-01 15 50526124 50526124 G A SLC27A2 Missense_Mutation p.G539R 0.15 deleterious(0.03) possibly_damaging(0.796) TCGA-S9-A6U6-01 16 9858072 9858072 G A GRIN2A Missense_Mutation p.S1110L 0.14 tolerated(0.05) benign(0.018) TCGA-S9-A6U6-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.87 deleterious(0) probably_damaging(0.998) TCGA-S9-A6U6-01 17 78388983 78388983 C T ENDOV 5'UTR 0.07 TCGA-S9-A6U6-01 18 21199494 21199494 C T ANKRD29 Splice_Site p.X209_splice 0.20 TCGA-S9-A6U6-01 19 18896653 18896653 C T COMP Missense_Mutation p.V500M 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-S9-A6U6-01 19 39299489 39299489 C T LGALS4 Silent p.T78T 0.04 TCGA-S9-A6U6-01 19 50155694 50155694 G - SCAF1 Frame_Shift_Del p.A685Pfs*53 0.09 TCGA-S9-A6U6-01 19 580702 580702 G A BSG Missense_Mutation p.A238T 0.11 deleterious(0.01) benign(0.43) TCGA-S9-A6U6-01 1 111743020 111743020 C T DENND2D Missense_Mutation p.R21Q 0.38 tolerated_low_confidence(0.43) benign(0.098) TCGA-S9-A6U6-01 1 186120454 186120454 A T HMCN1 Nonsense_Mutation p.K4911* 0.27 TCGA-S9-A6U6-01 20 330364 330364 G A NRSN2 Missense_Mutation p.R26H 0.14 tolerated(0.12) benign(0.048) TCGA-S9-A6U6-01 20 865871 865871 G A ANGPT4 Missense_Mutation p.R229C 0.33 deleterious(0) possibly_damaging(0.899) TCGA-S9-A6U6-01 22 45757767 45757767 A G SMC1B Missense_Mutation p.V887A 0.05 tolerated(0.9) benign(0.002) TCGA-S9-A6U6-01 2 179542881 179542881 G A TTN Missense_Mutation p.P11322L 0.16 TCGA-S9-A6U6-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6U6-01 2 219529149 219529149 A C RNF25 Missense_Mutation p.L304W 0.13 deleterious(0.05) possibly_damaging(0.759) TCGA-S9-A6U6-01 3 128344776 128344776 G A RPN1 Missense_Mutation p.R406C 0.40 deleterious(0) probably_damaging(0.974) TCGA-S9-A6U6-01 3 46568977 46568977 C T LRRC2 Missense_Mutation p.V290I 0.36 deleterious(0.04) probably_damaging(0.996) TCGA-S9-A6U6-01 3 48488230 48488230 A G ATRIP 5'UTR 0.11 TCGA-S9-A6U6-01 5 35691228 35691228 G T SPEF2 Missense_Mutation p.R538S 0.04 deleterious(0) probably_damaging(0.994) TCGA-S9-A6U6-01 6 42832831 42832831 C G GLTSCR1L Missense_Mutation p.H963D 0.09 tolerated_low_confidence(0.31) benign(0.002) TCGA-S9-A6U6-01 7 142989399 142989399 G T CASP2 Missense_Mutation p.V78L 0.08 tolerated(0.3) benign(0.102) TCGA-S9-A6U6-01 7 17379702 17379702 A T AHR Silent p.G751G 0.16 TCGA-S9-A6U6-01 8 10756203 10756203 G A XKR6 Silent p.C395C 0.15 TCGA-S9-A6U6-01 8 124162353 124162353 G C TBC1D31 Missense_Mutation p.D1018H 0.10 tolerated(0.15) benign(0.005) TCGA-S9-A6U6-01 8 125603405 125603405 T G MTSS1 Silent p.R94R 0.08 TCGA-S9-A6U6-01 8 144406702 144406702 G C TOP1MT Missense_Mutation p.Q257E 0.10 tolerated(0.06) possibly_damaging(0.671) TCGA-S9-A6U6-01 8 144522390 144522390 G T ZC3H3 Missense_Mutation p.S879Y 0.12 deleterious(0.03) benign(0.365) TCGA-S9-A6U6-01 8 39840263 39840263 G A IDO2 Silent p.T149T 0.38 TCGA-S9-A6U6-01 9 117240942 117240942 C T DFNB31 Missense_Mutation p.S243N 0.17 deleterious(0.01) possibly_damaging(0.58) TCGA-S9-A6U6-01 9 35555653 35555653 G A RUSC2 Missense_Mutation p.A871T 0.15 tolerated(0.5) benign(0.005) TCGA-S9-A6U6-01 X 76918997 76918998 - A ATRX Frame_Shift_Ins p.K1332* 0.46 TCGA-S9-A6U8-01 12 4736590 4736590 G A AKAP3 Missense_Mutation p.S493F 0.06 deleterious(0.03) benign(0.446) TCGA-S9-A6U8-01 13 46287414 46287414 C T SPERT Missense_Mutation p.A85V 0.39 tolerated_low_confidence(1) benign(0.006) TCGA-S9-A6U8-01 14 92472597 92472597 G A TRIP11 Missense_Mutation p.H575Y 0.36 deleterious(0.03) benign(0.004) TCGA-S9-A6U8-01 15 45357562 45357562 A G SORD Silent p.G173G 0.29 TCGA-S9-A6U8-01 15 48413173 48413173 A G SLC24A5 5'UTR 0.39 TCGA-S9-A6U8-01 15 89417087 89417087 C T ACAN Missense_Mutation p.P2450S 0.36 deleterious(0) probably_damaging(0.999) TCGA-S9-A6U8-01 16 50666305 50666305 C G NKD1 Missense_Mutation p.S270C 0.44 deleterious(0) probably_damaging(0.999) TCGA-S9-A6U8-01 17 33902780 33902780 A G PEX12 3'UTR 0.11 TCGA-S9-A6U8-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.76 deleterious(0) probably_damaging(0.997) TCGA-S9-A6U8-01 19 51628302 51628302 C T SIGLEC9 Missense_Mutation p.T24M 0.34 deleterious(0.03) benign(0.055) TCGA-S9-A6U8-01 19 9073155 9073155 G A MUC16 Missense_Mutation p.P4764L 0.39 unknown(0) TCGA-S9-A6U8-01 1 207758074 207758074 G T CR1 Nonsense_Mutation p.E1795* 0.32 TCGA-S9-A6U8-01 1 23848548 23848548 G A E2F2 Missense_Mutation p.T120I 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-S9-A6U8-01 20 36874469 36874469 G A KIAA1755 Silent p.F21F 0.31 TCGA-S9-A6U8-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-S9-A6U8-01 4 183694776 183694776 G T TENM3 Missense_Mutation p.D1682Y 0.04 deleterious(0.01) probably_damaging(0.939) TCGA-S9-A6U8-01 5 180335642 180335642 G A BTNL8 Missense_Mutation p.A36T 0.32 tolerated(0.14) benign(0.169) TCGA-S9-A6U8-01 7 5360235 5360235 G C TNRC18 Nonsense_Mutation p.Y2188* 0.05 TCGA-S9-A6U8-01 8 113301656 113301656 C T CSMD3 Missense_Mutation p.G3029D 0.37 deleterious(0) probably_damaging(1) TCGA-S9-A6U8-01 9 125582829 125582829 C G PDCL Missense_Mutation p.E147D 0.03 deleterious(0.01) probably_damaging(0.958) TCGA-S9-A6U8-01 9 2084102 2084102 G A SMARCA2 Missense_Mutation p.R811H 0.45 possibly_damaging(0.812) TCGA-S9-A6U8-01 9 99694200 99694200 C T NUTM2G Silent p.R71R 0.33 TCGA-S9-A6U8-01 X 76813106 76813106 T C ATRX Missense_Mutation p.E2172G 0.69 probably_damaging(0.999) TCGA-S9-A6U8-01 Y 24457097 24457097 G A RBMY2FP RNA 0.54 TCGA-S9-A6U9-01 10 116038488 116038488 C G VWA2 Silent p.V237V 0.55 TCGA-S9-A6U9-01 11 111594198 111594221 TCCTTTGATATTACCAATTTAGGC - SIK2 Splice_Site p.X716_splice 0.40 TCGA-S9-A6U9-01 11 56409457 56409457 G C OR5AP2 Silent p.T153T 0.23 TCGA-S9-A6U9-01 11 65829467 65829467 G C SF3B2 Missense_Mutation p.E659Q 0.30 tolerated(0.07) probably_damaging(0.931) TCGA-S9-A6U9-01 12 7045239 7045239 C G ATN1 Missense_Mutation p.A270G 0.24 benign(0.009) TCGA-S9-A6U9-01 14 79433549 79433549 A G NRXN3 Splice_Site p.X553_splice 0.29 TCGA-S9-A6U9-01 14 93730194 93730194 C T BTBD7 Silent p.S436S 0.24 TCGA-S9-A6U9-01 15 25415763 25415763 C T SNORD115-3 5'Flank 0.34 TCGA-S9-A6U9-01 17 60802387 60802387 G A MARCH10 Silent p.P672P 0.39 TCGA-S9-A6U9-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.55 deleterious(0) probably_damaging(1) TCGA-S9-A6U9-01 1 26104708 26104708 G A MAN1C1 Missense_Mutation p.G457D 0.47 deleterious(0) probably_damaging(0.999) TCGA-S9-A6U9-01 1 53736990 53736990 G A LRP8 Silent p.G345G 0.07 TCGA-S9-A6U9-01 20 20269322 20269322 G T C20orf26 Missense_Mutation p.V956L 0.37 deleterious(0) probably_damaging(0.999) TCGA-S9-A6U9-01 20 34240878 34240878 A G RBM12 Silent p.P789P 0.08 TCGA-S9-A6U9-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-S9-A6U9-01 3 13896294 13896294 C T WNT7A Missense_Mutation p.R102Q 0.20 deleterious(0.01) possibly_damaging(0.861) TCGA-S9-A6U9-01 3 52822010 52822010 C T ITIH1 Silent p.L645L 0.37 TCGA-S9-A6U9-01 4 169100462 169100462 T C ANXA10 Silent p.I241I 0.75 TCGA-S9-A6U9-01 4 52777312 52777312 T C DCUN1D4 Missense_Mutation p.L231P 0.06 deleterious(0.01) probably_damaging(0.992) TCGA-S9-A6U9-01 5 173317848 173317848 T - CPEB4 Frame_Shift_Del p.P373Lfs*21 0.11 TCGA-S9-A6U9-01 5 56176976 56177004 ACAATTGGCAAGAACTTCTTGGCCGCCTT - MAP3K1 Frame_Shift_Del p.N749Mfs*5 0.34 TCGA-S9-A6U9-01 6 158357011 158357011 A G SNX9 Missense_Mutation p.N461S 0.34 deleterious(0.04) probably_damaging(0.992) TCGA-S9-A6U9-01 6 43480227 43480227 G A YIPF3 Silent p.H285H 0.50 TCGA-S9-A6U9-01 6 51484035 51484035 G A PKHD1 Silent p.D4023D 0.28 TCGA-S9-A6U9-01 6 64408211 64408211 A G PHF3 Missense_Mutation p.I927V 0.29 tolerated(0.1) probably_damaging(0.992) TCGA-S9-A6U9-01 8 101612660 101612660 C T SNX31 Missense_Mutation p.D231N 0.31 deleterious(0) possibly_damaging(0.694) TCGA-S9-A6U9-01 8 68074125 68074125 A G CSPP1 Missense_Mutation p.D868G 0.28 tolerated(0.06) possibly_damaging(0.641) TCGA-S9-A6U9-01 X 117875042 117875042 A G IL13RA1 Missense_Mutation p.T51A 0.16 deleterious(0.01) benign(0.315) TCGA-S9-A6U9-01 X 76909645 76909646 TT - ATRX Frame_Shift_Del p.K1420Tfs*9 0.45 TCGA-S9-A6UA-01 10 129902953 129902953 C T MKI67 Missense_Mutation p.G2384D 0.06 tolerated(0.2) possibly_damaging(0.861) TCGA-S9-A6UA-01 10 28378749 28378749 C T MPP7 Missense_Mutation p.R325H 0.11 deleterious(0.02) probably_damaging(0.952) TCGA-S9-A6UA-01 10 73565576 73565576 G A CDH23 Missense_Mutation p.R389H 0.25 tolerated(0.23) benign(0.005) TCGA-S9-A6UA-01 11 119031673 119031673 C T ABCG4 Missense_Mutation p.R600W 0.08 deleterious(0) benign(0.339) TCGA-S9-A6UA-01 11 9534059 9534059 C T ZNF143 Silent p.D480D 0.13 TCGA-S9-A6UA-01 12 102158081 102158081 C T GNPTAB Missense_Mutation p.V872I 0.04 tolerated(0.21) benign(0.001) TCGA-S9-A6UA-01 12 56297190 56297190 G A WIBG Missense_Mutation p.P38S 0.07 deleterious(0) probably_damaging(0.998) TCGA-S9-A6UA-01 12 7261741 7261741 C G C1RL Missense_Mutation p.W12C 0.29 deleterious_low_confidence(0) benign(0) TCGA-S9-A6UA-01 12 91449700 91449700 A G KERA Missense_Mutation p.L120P 0.21 deleterious(0) possibly_damaging(0.872) TCGA-S9-A6UA-01 13 49075985 49075985 T C RCBTB2 Silent p.T379T 0.16 TCGA-S9-A6UA-01 14 104492043 104492043 C T TDRD9 Missense_Mutation p.P954L 0.07 deleterious(0) possibly_damaging(0.901) TCGA-S9-A6UA-01 14 106967443 106967443 A C IGHV1-46 Silent p.A14A 0.06 TCGA-S9-A6UA-01 15 81271558 81271558 C T MESDC2 3'UTR 0.18 TCGA-S9-A6UA-01 16 113631 113631 G A RHBDF1 Missense_Mutation p.T139M 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-S9-A6UA-01 16 3065626 3065626 G A CLDN6 Silent p.L133L 0.11 TCGA-S9-A6UA-01 16 31090150 31090150 C T ZNF646 Silent p.G835G 0.24 TCGA-S9-A6UA-01 16 48395776 48395776 G C SIAH1 Missense_Mutation p.H219Q 0.09 tolerated(0.07) benign(0.078) TCGA-S9-A6UA-01 16 53279712 53279712 A G CHD9 Missense_Mutation p.N1135S 0.15 probably_damaging(0.999) TCGA-S9-A6UA-01 17 29527570 29527571 - T NF1 Frame_Shift_Ins p.V341Cfs*12 0.26 TCGA-S9-A6UA-01 17 29684022 29684022 A T NF1 Nonsense_Mutation p.K2595* 0.20 TCGA-S9-A6UA-01 17 5264854 5264854 C A RABEP1 Missense_Mutation p.Q483K 0.35 tolerated(0.17) probably_damaging(0.998) TCGA-S9-A6UA-01 17 52993145 52993145 G A TOM1L1 Missense_Mutation p.M214I 0.40 tolerated(0.06) probably_damaging(0.995) TCGA-S9-A6UA-01 17 58740542 58740543 AC - PPM1D Frame_Shift_Del p.T483Ffs*5 0.21 TCGA-S9-A6UA-01 17 8047182 8047182 C A PER1 Missense_Mutation p.G825V 0.24 tolerated(0.23) benign(0.384) TCGA-S9-A6UA-01 17 80923550 80923550 C G B3GNTL1 Missense_Mutation p.G193R 0.40 deleterious(0) probably_damaging(1) TCGA-S9-A6UA-01 19 54403579 54403579 G A PRKCG Splice_Site p.X458_splice 0.24 TCGA-S9-A6UA-01 1 169828224 169828224 T G SCYL3 Missense_Mutation p.T424P 0.35 deleterious(0.03) probably_damaging(0.944) TCGA-S9-A6UA-01 1 27736491 27736491 C T WASF2 Missense_Mutation p.G345E 0.14 tolerated(1) unknown(0) TCGA-S9-A6UA-01 1 27877444 27877444 G A AHDC1 Missense_Mutation p.R395C 0.12 deleterious(0) possibly_damaging(0.835) TCGA-S9-A6UA-01 1 39878107 39878107 C T KIAA0754 Silent p.L588L 0.22 TCGA-S9-A6UA-01 1 54474649 54474649 G A LDLRAD1 3'UTR 0.09 TCGA-S9-A6UA-01 1 6504600 6504600 G A ESPN Silent p.P350P 0.20 TCGA-S9-A6UA-01 1 70493911 70493911 G C LRRC7 Missense_Mutation p.V580L 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-S9-A6UA-01 20 49197836 49197836 G T PTPN1 Missense_Mutation p.V375L 0.32 tolerated(0.27) benign(0.006) TCGA-S9-A6UA-01 22 23487582 23487582 T A RAB36 Silent p.L10L 0.05 TCGA-S9-A6UA-01 22 26860001 26860001 G A HPS4 Missense_Mutation p.A532V 0.29 tolerated(0.25) benign(0.098) TCGA-S9-A6UA-01 2 201284007 201284007 A G SPATS2L Missense_Mutation p.H78R 0.28 tolerated(0.14) probably_damaging(0.999) TCGA-S9-A6UA-01 2 219895995 219895995 G A CCDC108 Missense_Mutation p.S283F 0.10 deleterious(0) possibly_damaging(0.77) TCGA-S9-A6UA-01 2 27479686 27479686 G A SLC30A3 Missense_Mutation p.L285F 0.15 deleterious(0) possibly_damaging(0.649) TCGA-S9-A6UA-01 3 127783859 127783859 T C SEC61A1 Silent p.F252F 0.27 TCGA-S9-A6UA-01 3 194790640 194790640 C T XXYLT1 Missense_Mutation p.G329E 0.24 deleterious(0) probably_damaging(1) TCGA-S9-A6UA-01 5 140579893 140579894 GA - PCDHB11 Frame_Shift_Del p.R183Sfs*6 0.31 TCGA-S9-A6UA-01 5 68412039 68412039 T C SLC30A5 Missense_Mutation p.L357S 0.24 deleterious(0.01) possibly_damaging(0.582) TCGA-S9-A6UA-01 5 96232446 96232446 T - ERAP2 Frame_Shift_Del p.L462* 0.21 TCGA-S9-A6UA-01 6 170852781 170852781 C T PSMB1 Missense_Mutation p.G114E 0.21 tolerated(0.9) benign(0.019) TCGA-S9-A6UA-01 7 37907473 37907473 C G NME8 Missense_Mutation p.P264R 0.23 tolerated(0.2) benign(0.044) TCGA-S9-A6UA-01 8 12943288 12943288 T C DLC1 3'UTR 0.26 TCGA-S9-A6UA-01 9 101765779 101765779 C T COL15A1 Silent p.S370S 0.11 TCGA-S9-A6UA-01 9 33385527 33385527 C T AQP7 Intron 0.19 TCGA-S9-A6UA-01 X 10176378 10176378 C T CLCN4 Silent p.I379I 0.09 TCGA-S9-A6UA-01 X 76920268 76920268 C T ATRX Splice_Site p.X1270_splice 0.48 TCGA-S9-A6UB-01 10 3143689 3143689 G A PFKP Missense_Mutation p.G133R 0.26 deleterious(0) probably_damaging(0.923) TCGA-S9-A6UB-01 10 93719 93719 C T TUBB8 Missense_Mutation p.E205K 0.03 deleterious_low_confidence(0.03) possibly_damaging(0.555) TCGA-S9-A6UB-01 10 97583115 97583115 C T ENTPD1 Silent p.N58N 0.48 TCGA-S9-A6UB-01 11 123887129 123887129 A G OR10G4 Missense_Mutation p.N283S 0.14 deleterious(0.01) possibly_damaging(0.606) TCGA-S9-A6UB-01 11 1247990 1247990 C T MUC5B Silent p.N115N 0.08 TCGA-S9-A6UB-01 11 587410 587410 G A PHRF1 Silent p.T122T 0.34 TCGA-S9-A6UB-01 11 92087443 92087443 G A FAT3 Missense_Mutation p.G722E 0.39 benign(0.044) TCGA-S9-A6UB-01 11 94113633 94113633 C T GPR83 Silent p.K318K 0.04 TCGA-S9-A6UB-01 12 122399950 122399950 C G WDR66 Missense_Mutation p.Q792E 0.42 deleterious(0) probably_damaging(0.999) TCGA-S9-A6UB-01 12 21997752 21997752 G C ABCC9 Missense_Mutation p.A1065G 0.03 deleterious(0.05) possibly_damaging(0.668) TCGA-S9-A6UB-01 13 80911840 80911840 T C SPRY2 Translation_Start_Site p.M1? 0.39 deleterious(0) possibly_damaging(0.761) TCGA-S9-A6UB-01 14 72431532 72431532 A G RGS6 Silent p.Q8Q 0.36 TCGA-S9-A6UB-01 16 815715 815715 C T MSLN Missense_Mutation p.R274C 0.47 tolerated(0.07) possibly_damaging(0.901) TCGA-S9-A6UB-01 17 3627984 3627984 G A GSG2 Missense_Mutation p.G252E 0.45 tolerated_low_confidence(0.07) benign(0.066) TCGA-S9-A6UB-01 17 80195354 80195354 G A SLC16A3 Silent p.S236S 0.40 TCGA-S9-A6UB-01 19 14231314 14231314 C A ASF1B Missense_Mutation p.C189F 0.29 tolerated_low_confidence(0.31) benign(0.001) TCGA-S9-A6UB-01 19 42792003 42792003 G A CIC Nonsense_Mutation p.W269* 0.71 TCGA-S9-A6UB-01 19 47883203 47883203 C T DHX34 Silent p.A981A 0.09 TCGA-S9-A6UB-01 19 56181020 56181020 C T U2AF2 Missense_Mutation p.R419W 0.57 deleterious(0) probably_damaging(1) TCGA-S9-A6UB-01 19 6928249 6928249 G A EMR1 Intron 0.41 TCGA-S9-A6UB-01 1 193218979 193218979 C T CDC73 Missense_Mutation p.R513W 0.37 deleterious(0.02) possibly_damaging(0.512) TCGA-S9-A6UB-01 1 211544684 211544684 C T TRAF5 Missense_Mutation p.A324V 0.23 tolerated(0.3) benign(0.005) TCGA-S9-A6UB-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6UB-01 2 21238368 21238368 G A APOB Missense_Mutation p.R1128C 0.41 possibly_damaging(0.826) TCGA-S9-A6UB-01 3 154146723 154146727 TGGAG - GPR149 Frame_Shift_Del p.H226Qfs*59 0.41 TCGA-S9-A6UB-01 3 52939148 52939148 C T SFMBT1 3'UTR 0.38 TCGA-S9-A6UB-01 5 140167257 140167257 C T PCDHA1 Missense_Mutation p.T461I 0.42 deleterious_low_confidence(0.03) possibly_damaging(0.749) TCGA-S9-A6UB-01 5 179674427 179674427 G A MAPK9 Intron 0.05 TCGA-S9-A6UB-01 5 36962286 36962286 G A NIPBL Missense_Mutation p.V174M 0.41 deleterious(0.04) probably_damaging(0.926) TCGA-S9-A6UB-01 5 71756109 71756109 C T ZNF366 Silent p.P405P 0.49 TCGA-S9-A6UB-01 6 12123517 12123517 G A HIVEP1 Silent p.Q1163Q 0.37 TCGA-S9-A6UB-01 6 56918978 56918979 - T KIAA1586 Frame_Shift_Ins p.R562Kfs*14 0.26 TCGA-S9-A6UB-01 9 107266930 107266930 C T OR13F1 Silent p.P129P 0.49 TCGA-S9-A6UB-01 X 48053616 48053616 C T SSX5 Missense_Mutation p.A118T 0.84 tolerated(0.79) benign(0.02) TCGA-S9-A6WD-01 10 120450872 120450872 T C CACUL1 Silent p.P310P 0.36 TCGA-S9-A6WD-01 10 45430279 45430279 C G TMEM72 Silent p.L175L 0.39 TCGA-S9-A6WD-01 10 88836407 88836407 C T GLUD1 Missense_Mutation p.R151H 0.38 deleterious(0.04) probably_damaging(0.993) TCGA-S9-A6WD-01 10 91483645 91483645 T C KIF20B Intron 0.27 TCGA-S9-A6WD-01 11 118829004 118829004 C A UPK2 3'UTR 0.09 TCGA-S9-A6WD-01 11 34475370 34475370 G A CAT Missense_Mutation p.R203Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-S9-A6WD-01 11 48146663 48146663 C A PTPRJ Silent p.R340R 0.23 TCGA-S9-A6WD-01 12 27087520 27087520 G T ASUN Missense_Mutation p.S90Y 0.23 deleterious(0) probably_damaging(0.967) TCGA-S9-A6WD-01 12 67663461 67663461 T G CAND1 5'UTR 0.36 TCGA-S9-A6WD-01 13 102227854 102227854 C T ITGBL1 Silent p.D181D 0.03 TCGA-S9-A6WD-01 13 107219953 107219955 CTC - ARGLU1 In_Frame_Del p.E105del 0.29 TCGA-S9-A6WD-01 14 93693343 93693345 AGA - UBR7 In_Frame_Del p.R416del 0.40 TCGA-S9-A6WD-01 15 25333948 25333948 C T SNORD116-20 RNA 0.19 TCGA-S9-A6WD-01 15 74637578 74637578 C T CYP11A1 Silent p.S144S 0.35 TCGA-S9-A6WD-01 16 12662399 12662399 G A SNX29 Silent p.R785R 0.04 TCGA-S9-A6WD-01 16 135641 135641 G A MPG Silent p.P254P 0.24 TCGA-S9-A6WD-01 16 27856321 27856321 G A GSG1L Silent p.L204L 0.26 TCGA-S9-A6WD-01 16 53404691 53404691 C T RP11-44F14.1 RNA 0.27 TCGA-S9-A6WD-01 16 70546310 70546310 T C COG4 Silent p.K190K 0.30 TCGA-S9-A6WD-01 17 35300486 35300486 G A LHX1 3'UTR 0.19 TCGA-S9-A6WD-01 17 56270829 56270829 G A EPX Missense_Mutation p.A90T 0.29 deleterious(0.02) benign(0.271) TCGA-S9-A6WD-01 19 1080922 1080922 G A HMHA1 Silent p.P699P 0.33 TCGA-S9-A6WD-01 19 14157003 14157003 G A IL27RA Nonsense_Mutation p.W269* 0.37 TCGA-S9-A6WD-01 19 57066157 57066157 C A ZFP28 Missense_Mutation p.T668K 0.70 deleterious(0) probably_damaging(0.999) TCGA-S9-A6WD-01 1 145074894 145074894 A G PDE4DIP 3'UTR 0.23 TCGA-S9-A6WD-01 1 215408391 215408391 T G KCNK2 Missense_Mutation p.V395G 0.15 tolerated_low_confidence(0.15) benign(0) TCGA-S9-A6WD-01 1 215408420 215408420 A T KCNK2 Missense_Mutation p.I405F 0.14 deleterious_low_confidence(0.01) benign(0.004) TCGA-S9-A6WD-01 21 15750617 15750617 T C HSPA13 Silent p.A161A 0.43 TCGA-S9-A6WD-01 2 121685032 121685032 G A GLI2 Missense_Mutation p.G82S 0.14 tolerated(0.4) benign(0.011) TCGA-S9-A6WD-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6WD-01 2 227662549 227662549 T G IRS1 Silent p.R302R 0.15 TCGA-S9-A6WD-01 3 182804549 182804549 C T MCCC1 Missense_Mutation p.A101T 0.42 deleterious(0) probably_damaging(0.983) TCGA-S9-A6WD-01 3 36896948 36896948 G A TRANK1 Missense_Mutation p.S1378L 0.36 deleterious(0.02) benign(0.052) TCGA-S9-A6WD-01 4 169183842 169183842 G A DDX60 Missense_Mutation p.R1046W 0.35 deleterious(0) probably_damaging(0.965) TCGA-S9-A6WD-01 4 71201164 71201164 C G CABS1 Silent p.S136S 0.17 TCGA-S9-A6WD-01 5 100222198 100222198 G A ST8SIA4 Silent p.L118L 0.22 TCGA-S9-A6WD-01 5 142780104 142780104 C T NR3C1 Missense_Mutation p.D101N 0.05 tolerated_low_confidence(0.07) possibly_damaging(0.456) TCGA-S9-A6WD-01 5 149583555 149583555 T G SLC6A7 Missense_Mutation p.L429R 0.05 tolerated(0.34) benign(0.153) TCGA-S9-A6WD-01 5 40959677 40959677 C T C7 Missense_Mutation p.T539M 0.30 tolerated(0.09) probably_damaging(0.932) TCGA-S9-A6WD-01 6 152772223 152772223 T A SYNE1 Missense_Mutation p.M1049L 0.30 benign(0) TCGA-S9-A6WD-01 6 25605088 25605088 A G LRRC16A Missense_Mutation p.S1201G 0.24 tolerated_low_confidence(0.23) benign(0) TCGA-S9-A6WD-01 6 87966803 87966806 GTTT - ZNF292 Frame_Shift_Del p.V1154Ifs*7 0.35 TCGA-S9-A6WD-01 7 100839216 100839216 C T MOGAT3 3'UTR 0.40 TCGA-S9-A6WD-01 7 43622817 43622817 C T STK17A 5'UTR 0.15 TCGA-S9-A6WD-01 8 67039513 67039513 T C TRIM55 Missense_Mutation p.S4P 0.19 tolerated(0.14) probably_damaging(0.979) TCGA-S9-A6WD-01 X 55651077 55651077 T C FOXR2 Silent p.L311L 0.19 TCGA-S9-A6WE-01 10 37418878 37418881 AGAC - ANKRD30A Frame_Shift_Del p.D38Efs*16 0.33 TCGA-S9-A6WE-01 10 76784828 76784828 A G KAT6B Missense_Mutation p.N1162S 0.55 benign(0.01) TCGA-S9-A6WE-01 11 108409780 108409780 A G EXPH5 Silent p.T138T 0.40 TCGA-S9-A6WE-01 11 61049329 61049329 T - VWCE Frame_Shift_Del p.N239Tfs*126 0.37 TCGA-S9-A6WE-01 11 72316192 72316192 C T PDE2A Missense_Mutation p.G105R 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-S9-A6WE-01 12 122817533 122817533 C T CLIP1 Splice_Site p.X956_splice 0.36 TCGA-S9-A6WE-01 14 68274236 68274236 C T ZFYVE26 Silent p.R255R 0.42 TCGA-S9-A6WE-01 17 4442327 4442327 A G SPNS2 3'UTR 0.46 TCGA-S9-A6WE-01 19 42791718 42791718 C T CIC Missense_Mutation p.R202W 0.57 probably_damaging(1) TCGA-S9-A6WE-01 19 55294951 55294951 G A KIR2DL1 Missense_Mutation p.M277I 0.27 tolerated(0.06) benign(0.142) TCGA-S9-A6WE-01 20 24930047 24930047 G A CST7 5'UTR 0.32 TCGA-S9-A6WE-01 20 7982176 7982176 C T TMX4 Missense_Mutation p.R102H 0.37 deleterious(0) probably_damaging(0.993) TCGA-S9-A6WE-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6WE-01 2 209165737 209165737 A G PIKFYVE Missense_Mutation p.Y376C 0.43 deleterious(0) probably_damaging(0.981) TCGA-S9-A6WE-01 5 122361500 122361500 A G PPIC Silent p.F163F 0.45 TCGA-S9-A6WG-01 12 57944094 57944094 T C KIF5A Missense_Mutation p.C14R 0.04 deleterious(0) probably_damaging(0.999) TCGA-S9-A6WG-01 12 97051791 97051791 C T C12orf55 Silent p.H1744H 0.32 TCGA-S9-A6WG-01 13 42876142 42876142 A G AKAP11 Missense_Mutation p.D1087G 0.10 deleterious(0.03) benign(0.16) TCGA-S9-A6WG-01 17 43246712 43246712 G A HEXIM2 Missense_Mutation p.A133T 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-S9-A6WG-01 17 4352554 4352554 C T SPNS3 Silent p.L265L 0.28 TCGA-S9-A6WG-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.23 TCGA-S9-A6WG-01 17 7578388 7578388 C T TP53 Missense_Mutation p.R181H 0.27 deleterious(0.02) probably_damaging(0.977) TCGA-S9-A6WG-01 19 15648180 15648180 G A CYP4F22 Missense_Mutation p.A126T 0.25 tolerated(0.2) probably_damaging(0.998) TCGA-S9-A6WG-01 19 50436053 50436053 C A ATF5 Missense_Mutation p.Q185K 0.11 tolerated(0.4) benign(0.036) TCGA-S9-A6WG-01 19 53747061 53747061 G A ZNF677 Silent p.D35D 0.27 TCGA-S9-A6WG-01 1 59137620 59137620 G T MYSM1 Missense_Mutation p.A528D 0.22 deleterious(0) possibly_damaging(0.696) TCGA-S9-A6WG-01 20 57768604 57768604 C T ZNF831 Missense_Mutation p.P844S 0.04 tolerated(0.86) benign(0.091) TCGA-S9-A6WG-01 20 60499460 60499460 C T CDH4 Missense_Mutation p.A566V 0.10 tolerated(0.3) benign(0.004) TCGA-S9-A6WG-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6WG-01 2 220342458 220342458 C T SPEG Nonsense_Mutation p.R1593* 0.21 TCGA-S9-A6WG-01 3 38743473 38743473 G A SCN10A Missense_Mutation p.T1505M 0.26 tolerated(0.05) possibly_damaging(0.88) TCGA-S9-A6WG-01 4 103747816 103747816 C A UBE2D3 Intron 0.21 TCGA-S9-A6WG-01 4 166405649 166405649 A G CPE Missense_Mutation p.N289S 0.03 deleterious(0.01) possibly_damaging(0.579) TCGA-S9-A6WG-01 5 176638954 176638954 G T NSD1 Missense_Mutation p.C1185F 0.05 deleterious_low_confidence(0) benign(0) TCGA-S9-A6WG-01 6 132176133 132176133 G A ENPP1 Missense_Mutation p.G229S 0.05 tolerated(1) benign(0.262) TCGA-S9-A6WG-01 6 70639416 70639416 C T COL19A1 Missense_Mutation p.R164C 0.13 tolerated(0.14) unknown(0) TCGA-S9-A6WG-01 7 27224643 27224643 G A HOXA11 Missense_Mutation p.R41C 0.16 tolerated(0.22) probably_damaging(0.981) TCGA-S9-A6WG-01 9 34371189 34371189 G A KIAA1161 Missense_Mutation p.P551S 0.10 tolerated(0.05) probably_damaging(1) TCGA-S9-A6WG-01 9 75355081 75355081 G T TMC1 Nonsense_Mutation p.G137* 0.11 TCGA-S9-A6WG-01 X 100603700 100603700 G T TIMM8A 5'UTR 0.46 TCGA-S9-A6WG-01 X 147014240 147014240 G A FMR1 Missense_Mutation p.E280K 0.05 deleterious(0) probably_damaging(0.997) TCGA-S9-A6WG-01 X 153133891 153133891 C T L1CAM Silent p.G523G 0.28 TCGA-S9-A6WG-01 X 76875920 76875920 G A ATRX Nonsense_Mutation p.R1739* 0.55 TCGA-S9-A6WH-01 10 124214434 124214435 - CAT ARMS2 In_Frame_Ins p.S64_M65insI 0.54 TCGA-S9-A6WH-01 10 28342894 28342894 T G MPP7 3'UTR 0.30 TCGA-S9-A6WH-01 10 5693260 5693260 A C ASB13 Missense_Mutation p.C100G 0.21 deleterious(0) possibly_damaging(0.791) TCGA-S9-A6WH-01 10 5782302 5782302 G A FAM208B Silent p.P723P 0.06 TCGA-S9-A6WH-01 10 61835771 61835771 C T ANK3 Missense_Mutation p.R1623Q 0.45 probably_damaging(0.953) TCGA-S9-A6WH-01 10 89117975 89117975 T - NUTM2D 5'UTR 0.10 TCGA-S9-A6WH-01 10 96740964 96740964 G A CYP2C9 Missense_Mutation p.R329H 0.06 tolerated(0.27) benign(0.023) TCGA-S9-A6WH-01 11 103052532 103052532 A T DYNC2H1 Missense_Mutation p.N2132Y 0.33 benign(0.246) TCGA-S9-A6WH-01 11 121414352 121414352 G A SORL1 Missense_Mutation p.S594N 0.09 deleterious(0) probably_damaging(0.998) TCGA-S9-A6WH-01 11 1718511 1718511 C T KRTAP5-6 Silent p.S12S 0.05 TCGA-S9-A6WH-01 11 4615307 4615307 T C OR52I1 Silent p.P13P 0.16 TCGA-S9-A6WH-01 11 4904034 4904034 G A OR51T1 Missense_Mutation p.R329H 0.05 deleterious(0.04) benign(0.051) TCGA-S9-A6WH-01 12 330125 330125 A T SLC6A13 Missense_Mutation p.S600T 0.11 tolerated_low_confidence(0.83) benign(0.126) TCGA-S9-A6WH-01 12 48272841 48272841 T C VDR Missense_Mutation p.N69S 0.10 tolerated(0.11) benign(0.06) TCGA-S9-A6WH-01 13 44953804 44953804 G A SERP2 Missense_Mutation p.G38R 0.10 deleterious(0) probably_damaging(0.965) TCGA-S9-A6WH-01 13 52972267 52972267 T C THSD1 Missense_Mutation p.T41A 0.11 deleterious(0.02) benign(0.41) TCGA-S9-A6WH-01 14 105945493 105945493 G A CRIP2 Nonsense_Mutation p.W220* 0.09 TCGA-S9-A6WH-01 14 56150836 56150837 TG - KTN1 3'UTR 0.08 TCGA-S9-A6WH-01 15 42180130 42180130 G C SPTBN5 Missense_Mutation p.H219D 0.23 probably_damaging(1) TCGA-S9-A6WH-01 15 42438416 42438416 G A PLA2G4F Silent p.D481D 0.04 TCGA-S9-A6WH-01 15 43822061 43822061 A G MAP1A Missense_Mutation p.N2750S 0.07 probably_damaging(0.991) TCGA-S9-A6WH-01 15 49097830 49097830 C T CEP152 Missense_Mutation p.G6D 0.05 tolerated(0.91) probably_damaging(1) TCGA-S9-A6WH-01 15 56387780 56387780 T - RFX7 Frame_Shift_Del p.S716Afs*5 0.20 TCGA-S9-A6WH-01 15 57523426 57523427 - T TCF12 Frame_Shift_Ins p.M220Yfs*4 0.14 TCGA-S9-A6WH-01 16 1395342 1395342 G A BAIAP3 Nonsense_Mutation p.W713* 0.06 TCGA-S9-A6WH-01 16 23392080 23392080 G A SCNN1B Silent p.P627P 0.06 TCGA-S9-A6WH-01 16 28606983 28606983 C T SULT1A2 Silent p.V54V 0.07 TCGA-S9-A6WH-01 16 30199764 30199764 G A CORO1A Missense_Mutation p.R383Q 0.10 tolerated(0.43) benign(0.041) TCGA-S9-A6WH-01 16 67691490 67691490 A C ACD 3'UTR 0.14 TCGA-S9-A6WH-01 16 74695259 74695259 T C RFWD3 Missense_Mutation p.Q30R 0.04 tolerated_low_confidence(0.08) possibly_damaging(0.451) TCGA-S9-A6WH-01 17 27442064 27442064 G A MYO18A Missense_Mutation p.P791L 0.08 deleterious(0) probably_damaging(0.995) TCGA-S9-A6WH-01 17 75205560 75205560 T C SEC14L1 Splice_Site p.X537_splice 0.21 TCGA-S9-A6WH-01 19 12221205 12221205 G A ZNF788 Missense_Mutation p.R50Q 0.15 deleterious(0.04) benign(0.003) TCGA-S9-A6WH-01 19 42791758 42791758 G A CIC Missense_Mutation p.R215Q 0.92 probably_damaging(0.999) TCGA-S9-A6WH-01 19 50784917 50784917 C T MYH14 Missense_Mutation p.R1453C 0.89 deleterious(0) probably_damaging(0.954) TCGA-S9-A6WH-01 1 10042595 10042595 A G NMNAT1 Missense_Mutation p.I226V 0.86 tolerated(0.49) benign(0.186) TCGA-S9-A6WH-01 1 156376736 156376736 G A C1orf61 Intron 0.04 TCGA-S9-A6WH-01 1 160604539 160604539 G T SLAMF1 Silent p.A188A 0.05 TCGA-S9-A6WH-01 1 162313631 162313631 G A NOS1AP Missense_Mutation p.A154T 0.04 deleterious(0) probably_damaging(0.986) TCGA-S9-A6WH-01 1 19523634 19523634 C T UBR4 Splice_Site p.X340_splice 0.19 TCGA-S9-A6WH-01 1 206772892 206772892 T C EIF2D Missense_Mutation p.Y376C 0.04 deleterious(0) probably_damaging(0.999) TCGA-S9-A6WH-01 1 220870064 220870064 C T C1orf115 Silent p.F140F 0.09 TCGA-S9-A6WH-01 1 235950608 235950608 T C LYST Missense_Mutation p.N1585S 0.05 tolerated(0.18) benign(0.067) TCGA-S9-A6WH-01 1 2436221 2436221 C T PLCH2 3'UTR 0.38 TCGA-S9-A6WH-01 1 248637146 248637146 C T OR2T3 Silent p.T165T 0.14 TCGA-S9-A6WH-01 1 42880615 42880615 C T RIMKLA Silent p.N382N 0.08 TCGA-S9-A6WH-01 1 74954885 74954885 T A TNNI3K Missense_Mutation p.F813I 0.12 deleterious(0) possibly_damaging(0.623) TCGA-S9-A6WH-01 1 91989862 91989862 T G CDC7 Nonsense_Mutation p.L532* 0.07 TCGA-S9-A6WH-01 1 9661304 9661304 C T TMEM201 Silent p.L250L 0.31 TCGA-S9-A6WH-01 20 43561000 43561000 A G PABPC1L Silent p.A419A 0.17 TCGA-S9-A6WH-01 20 745940 745940 C T SLC52A3 Missense_Mutation p.G160D 0.25 deleterious(0) probably_damaging(0.997) TCGA-S9-A6WH-01 22 17073095 17073095 G A CCT8L2 Silent p.L116L 0.39 TCGA-S9-A6WH-01 22 37708164 37708164 G A CYTH4 Missense_Mutation p.R354H 0.45 deleterious(0.02) probably_damaging(0.914) TCGA-S9-A6WH-01 2 109109230 109109230 T A GCC2 Missense_Mutation p.N1477K 0.06 deleterious(0.04) benign(0.024) TCGA-S9-A6WH-01 2 179615659 179615659 A G TTN Intron 0.18 TCGA-S9-A6WH-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6WH-01 2 219920186 219920186 C T IHH Missense_Mutation p.G327R 0.08 deleterious(0.02) probably_damaging(1) TCGA-S9-A6WH-01 2 65467018 65467018 T C ACTR2 Silent p.F27F 0.10 TCGA-S9-A6WH-01 2 74709771 74709771 T G CCDC142 Missense_Mutation p.E65A 0.20 deleterious_low_confidence(0.01) benign(0.196) TCGA-S9-A6WH-01 2 85777115 85777115 T G GGCX Missense_Mutation p.D740A 0.38 deleterious_low_confidence(0.05) benign(0.05) TCGA-S9-A6WH-01 3 11301252 11301252 G A HRH1 Missense_Mutation p.E177K 0.04 tolerated(0.21) benign(0.03) TCGA-S9-A6WH-01 3 136046565 136046565 G A PCCB Missense_Mutation p.M483I 0.39 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-S9-A6WH-01 3 170843805 170843805 G A TNIK Missense_Mutation p.R637C 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-S9-A6WH-01 3 186504636 186504636 A C EIF4A2 Intron 0.10 TCGA-S9-A6WH-01 3 193019013 193019013 A G ATP13A5 Missense_Mutation p.L921S 0.07 tolerated(0.4) benign(0) TCGA-S9-A6WH-01 3 49365164 49365166 TAG - USP4 In_Frame_Del p.L105del 0.13 TCGA-S9-A6WH-01 3 72427764 72427764 C G RYBP Missense_Mutation p.R242S 0.04 deleterious(0) possibly_damaging(0.765) TCGA-S9-A6WH-01 4 113539732 113539732 G T C4orf21 Missense_Mutation p.S489Y 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-S9-A6WH-01 4 183676100 183676100 A G TENM3 Missense_Mutation p.N1527S 0.05 tolerated(0.45) benign(0.009) TCGA-S9-A6WH-01 4 77228079 77228079 C T FAM47E-STBD1 Missense_Mutation p.H53Y 0.17 tolerated(0.06) benign(0.01) TCGA-S9-A6WH-01 4 77228080 77228080 A C FAM47E-STBD1 Missense_Mutation p.H53P 0.17 tolerated(0.16) benign(0) TCGA-S9-A6WH-01 5 140810520 140810520 G A PCDHGA12 Missense_Mutation p.R65H 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.881) TCGA-S9-A6WH-01 5 149323960 149323960 G A PDE6A Missense_Mutation p.R93C 0.21 tolerated(0.06) benign(0.016) TCGA-S9-A6WH-01 5 36124351 36124351 T A LMBRD2 Missense_Mutation p.N255I 0.38 tolerated(0.06) benign(0.014) TCGA-S9-A6WH-01 6 148865734 148865734 C G SASH1 Missense_Mutation p.P1043R 0.08 deleterious_low_confidence(0) benign(0.209) TCGA-S9-A6WH-01 6 27782132 27782135 TTAC - HIST1H2AJ Frame_Shift_Del p.*129D 0.10 TCGA-S9-A6WH-01 6 2890403 2890403 C T SERPINB9 Silent p.S375S 0.51 TCGA-S9-A6WH-01 6 39846201 39846201 G A DAAM2 Missense_Mutation p.R461H 0.31 deleterious(0.01) benign(0.323) TCGA-S9-A6WH-01 6 43474947 43474947 G A LRRC73 3'UTR 0.31 TCGA-S9-A6WH-01 6 43496612 43496612 G T XPO5 Missense_Mutation p.A910D 0.07 tolerated(0.14) benign(0.046) TCGA-S9-A6WH-01 6 46656908 46656908 A G TDRD6 Missense_Mutation p.Y348C 0.05 deleterious(0.03) benign(0.103) TCGA-S9-A6WH-01 6 89600293 89600293 G A RNGTT Missense_Mutation p.P273S 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-S9-A6WH-01 7 100028465 100028465 C - MEPCE Frame_Shift_Del p.A275Efs*163 0.10 TCGA-S9-A6WH-01 7 48349704 48349704 G C ABCA13 Missense_Mutation p.S3161T 0.03 benign(0.01) TCGA-S9-A6WH-01 7 99250313 99250313 T C CYP3A5 Silent p.R372R 0.11 TCGA-S9-A6WH-01 8 36793054 36793054 C T KCNU1 Silent p.A1022A 0.04 TCGA-S9-A6WH-01 8 48790318 48790318 A T PRKDC Nonsense_Mutation p.L1776* 0.03 TCGA-S9-A6WH-01 8 59404091 59404091 C A CYP7A1 Missense_Mutation p.L486F 0.16 deleterious(0.03) probably_damaging(1) TCGA-S9-A6WH-01 8 72127688 72127688 T C EYA1 Missense_Mutation p.K511E 0.03 deleterious(0) possibly_damaging(0.745) TCGA-S9-A6WH-01 8 74893730 74893733 GTTA - TMEM70 Frame_Shift_Del p.V221Ifs*14 0.12 TCGA-S9-A6WH-01 8 95412677 95412677 C T RAD54B Missense_Mutation p.C320Y 0.19 tolerated(1) benign(0.002) TCGA-S9-A6WH-01 9 105767734 105767734 A T CYLC2 Missense_Mutation p.K274M 0.41 deleterious(0) unknown(0) TCGA-S9-A6WH-01 9 72659110 72659110 G A MAMDC2 5'UTR 0.10 TCGA-S9-A6WH-01 X 101972002 101972002 G C GPRASP2 Missense_Mutation p.K735N 0.08 deleterious(0) possibly_damaging(0.744) TCGA-S9-A6WH-01 X 118540573 118540573 A T SLC25A43 Silent p.P142P 0.10 TCGA-S9-A6WH-01 X 150770028 150770028 G A PASD1 Translation_Start_Site p.M1? 0.03 tolerated_low_confidence(0.13) benign(0.006) TCGA-S9-A6WH-01 X 152159711 152159711 G A PNMA5 Silent p.S144S 0.08 TCGA-S9-A6WH-01 X 153490572 153490572 C T OPN1MW2 Missense_Mutation p.T103I 0.47 tolerated(0.12) possibly_damaging(0.733) TCGA-S9-A6WH-01 X 155004315 155004315 G A SPRY3 Missense_Mutation p.R261H 0.07 deleterious(0) probably_damaging(0.985) TCGA-S9-A6WH-01 X 26212566 26212566 G A MAGEB6 Silent p.T201T 0.04 TCGA-S9-A6WH-01 X 53644041 53644041 C A HUWE1 Missense_Mutation p.R616L 0.27 probably_damaging(1) TCGA-S9-A6WH-01 X 77528954 77528954 C T CYSLTR1 Missense_Mutation p.R97H 0.18 deleterious(0) probably_damaging(1) TCGA-S9-A6WH-01 X 99934381 99934381 C A SYTL4 Missense_Mutation p.Q529H 0.26 tolerated(0.46) probably_damaging(0.912) TCGA-S9-A6WI-01 10 124333279 124333279 G A DMBT1 Splice_Site p.X95_splice 0.09 TCGA-S9-A6WI-01 11 27398748 27398749 TT - LGR4 Frame_Shift_Del p.I355Mfs*7 0.15 TCGA-S9-A6WI-01 13 39263907 39263907 G A FREM2 Missense_Mutation p.R809Q 0.10 tolerated(0.37) benign(0.002) TCGA-S9-A6WI-01 14 24606754 24606754 A C PSME1 Missense_Mutation p.K91T 0.14 tolerated(0.09) benign(0.164) TCGA-S9-A6WI-01 16 10032029 10032029 G A GRIN2A Missense_Mutation p.T265M 0.04 tolerated(0.27) possibly_damaging(0.749) TCGA-S9-A6WI-01 16 2143667 2143667 C T PKD1 Missense_Mutation p.E3632K 0.07 probably_damaging(0.945) TCGA-S9-A6WI-01 16 2236990 2236990 C A CASKIN1 Missense_Mutation p.D307Y 0.08 probably_damaging(0.999) TCGA-S9-A6WI-01 16 67333543 67333543 G A KCTD19 Intron 0.07 TCGA-S9-A6WI-01 17 18881175 18881175 G A FAM83G Missense_Mutation p.R602C 0.12 tolerated(0.07) benign(0.001) TCGA-S9-A6WI-01 17 27061088 27061088 G A NEK8 Silent p.R45R 0.07 TCGA-S9-A6WI-01 17 49197893 49197893 T C SPAG9 Missense_Mutation p.Y42C 0.13 deleterious(0) probably_damaging(0.999) TCGA-S9-A6WI-01 19 49867940 49867940 G A DKKL1 Missense_Mutation p.A38T 0.19 tolerated_low_confidence(0.26) benign(0.024) TCGA-S9-A6WI-01 19 49898519 49898519 G A CCDC155 Missense_Mutation p.R102H 0.15 deleterious(0) possibly_damaging(0.888) TCGA-S9-A6WI-01 19 53793815 53793815 T C BIRC8 5'UTR 0.16 TCGA-S9-A6WI-01 1 6530295 6530295 C T PLEKHG5 Splice_Site p.X679_splice 0.10 TCGA-S9-A6WI-01 20 37203492 37203492 A T RALGAPB Missense_Mutation p.H1456L 0.06 deleterious(0) probably_damaging(0.998) TCGA-S9-A6WI-01 2 128377779 128377779 G A MYO7B Intron 0.27 TCGA-S9-A6WI-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-S9-A6WI-01 2 240005917 240005917 G A HDAC4 Silent p.S817S 0.07 TCGA-S9-A6WI-01 3 150834225 150834225 C T MED12L Missense_Mutation p.S67L 0.15 deleterious(0) possibly_damaging(0.644) TCGA-S9-A6WI-01 3 49869465 49869465 C T TRAIP Silent p.R307R 0.13 TCGA-S9-A6WI-01 4 154709562 154709562 G A SFRP2 Silent p.C142C 0.08 TCGA-S9-A6WI-01 4 20715062 20715062 C T PACRGL Missense_Mutation p.S170L 0.13 tolerated(0.14) benign(0.005) TCGA-S9-A6WI-01 7 104722169 104722174 TTTATA - KMT2E In_Frame_Del p.I430_Y431del 0.13 TCGA-S9-A6WI-01 9 112686117 112686117 G A PALM2-AKAP2 Silent p.K120K 0.13 TCGA-S9-A6WI-01 9 112686126 112686126 G C PALM2-AKAP2 Missense_Mutation p.Q123H 0.12 tolerated_low_confidence(0.06) possibly_damaging(0.466) TCGA-S9-A6WI-01 9 133376413 133376413 G T ASS1 3'UTR 0.10 TCGA-S9-A6WI-01 X 106082571 106082571 G T TBC1D8B Missense_Mutation p.D413Y 0.09 tolerated(0.25) benign(0.221) TCGA-S9-A6WI-01 X 114082755 114082755 C T HTR2C Missense_Mutation p.A180V 0.15 tolerated(0.89) benign(0.03) TCGA-S9-A6WI-01 X 119211252 119211252 A T RHOXF2B Missense_Mutation p.D27E 0.28 tolerated(0.09) possibly_damaging(0.672) TCGA-S9-A6WI-01 X 71351177 71351177 C T RGAG4 Missense_Mutation p.A72T 0.06 deleterious_low_confidence(0.01) benign(0.005) TCGA-S9-A6WI-01 X 76763812 76763812 A G ATRX 3'UTR 0.15 TCGA-S9-A6WL-01 10 105942139 105942139 G A WDR96 Silent p.S758S 0.18 TCGA-S9-A6WL-01 10 134523946 134523946 C T INPP5A Silent p.G211G 0.13 TCGA-S9-A6WL-01 10 17949595 17949595 G A MRC1L1 Nonsense_Mutation p.W1320* 0.37 TCGA-S9-A6WL-01 10 18196508 18196508 G A MRC1 Nonsense_Mutation p.W1320* 0.33 TCGA-S9-A6WL-01 11 77413493 77413493 C T RSF1 Missense_Mutation p.D261N 0.32 tolerated(0.08) benign(0.005) TCGA-S9-A6WL-01 11 88386475 88386475 C G GRM5 Missense_Mutation p.W336C 0.17 tolerated(0.05) probably_damaging(1) TCGA-S9-A6WL-01 12 112605711 112605714 GAAA - HECTD4 Frame_Shift_Del p.F3927Afs*36 0.44 TCGA-S9-A6WL-01 12 121775117 121775117 A T ANAPC5 Missense_Mutation p.F246I 0.22 tolerated(0.22) probably_damaging(0.959) TCGA-S9-A6WL-01 12 49424957 49424959 CCT - KMT2D Splice_Site p.X4510_splice 0.17 TCGA-S9-A6WL-01 12 52946639 52946639 G A KRT71 Missense_Mutation p.R75W 0.22 tolerated(0.17) benign(0.052) TCGA-S9-A6WL-01 15 24923368 24923368 C T NPAP1 Missense_Mutation p.S785F 0.03 tolerated_low_confidence(0.16) possibly_damaging(0.683) TCGA-S9-A6WL-01 15 42714728 42714728 C A ZNF106 Missense_Mutation p.D1759Y 0.07 deleterious(0) probably_damaging(1) TCGA-S9-A6WL-01 15 48053942 48053943 TT - SEMA6D Frame_Shift_Del p.F178Cfs*2 0.11 TCGA-S9-A6WL-01 15 51772904 51772906 TCT - DMXL2 In_Frame_Del p.R2133del 0.31 TCGA-S9-A6WL-01 15 63009793 63009793 G A TLN2 Missense_Mutation p.A928T 0.14 tolerated(0.07) possibly_damaging(0.581) TCGA-S9-A6WL-01 15 65369306 65369306 C T KBTBD13 Silent p.G51G 0.36 TCGA-S9-A6WL-01 15 78566734 78566736 AGA - DNAJA4 In_Frame_Del p.K236del 0.45 TCGA-S9-A6WL-01 16 25268072 25268075 TCTT - ZKSCAN2 Frame_Shift_Del p.K125Rfs*5 0.50 TCGA-S9-A6WL-01 16 58077146 58077146 C G MMP15 Missense_Mutation p.L446V 0.34 tolerated(0.26) benign(0.019) TCGA-S9-A6WL-01 16 76461496 76461499 AGTA - CNTNAP4 Splice_Site p.X155_splice 0.23 TCGA-S9-A6WL-01 17 3101421 3101421 C T OR1A2 Silent p.V203V 0.35 TCGA-S9-A6WL-01 17 40133976 40133978 CTT - DNAJC7 In_Frame_Del p.K427del 0.15 TCGA-S9-A6WL-01 19 39691074 39691074 C A NCCRP1 Missense_Mutation p.H213N 0.37 tolerated(0.22) possibly_damaging(0.704) TCGA-S9-A6WL-01 19 50157637 50157637 C A SCAF1 Silent p.A1116A 0.05 TCGA-S9-A6WL-01 19 7626197 7626197 C T PNPLA6 Silent p.S1349S 0.43 TCGA-S9-A6WL-01 1 118045591 118045594 AAGT - MAN1A2 Splice_Site p.X598_splice 0.19 TCGA-S9-A6WL-01 1 150801696 150801696 C G ARNT Missense_Mutation p.S347T 0.04 tolerated(0.07) benign(0.11) TCGA-S9-A6WL-01 1 152058921 152058921 G A TCHHL1 Missense_Mutation p.R413W 0.04 deleterious(0) benign(0.394) TCGA-S9-A6WL-01 1 152484205 152484225 TGGCTGCTGCCTGAGCCACCA GGGGCT LCE5A In_Frame_Del p.C67_H72delinsL 0.19 TCGA-S9-A6WL-01 1 155269925 155269925 C T PKLR Missense_Mutation p.V83M 0.05 tolerated(0.18) benign(0.006) TCGA-S9-A6WL-01 1 185970471 185970471 T C HMCN1 Missense_Mutation p.S1371P 0.46 probably_damaging(0.995) TCGA-S9-A6WL-01 1 202992124 202992125 TT - TMEM183A Frame_Shift_Del p.F363* 0.08 TCGA-S9-A6WL-01 1 22903061 22903061 C T EPHA8 Missense_Mutation p.R171C 0.08 deleterious(0) probably_damaging(0.999) TCGA-S9-A6WL-01 1 235345318 235345319 CA - ARID4B Frame_Shift_Del p.V972Gfs*2 0.29 TCGA-S9-A6WL-01 20 20056149 20056149 T C C20orf26 Silent p.T152T 0.25 TCGA-S9-A6WL-01 20 30345320 30345320 C T TPX2 Missense_Mutation p.S14L 0.06 deleterious(0.01) benign(0.007) TCGA-S9-A6WL-01 21 42773954 42773954 A G MX2 Missense_Mutation p.E491G 0.04 deleterious(0) benign(0.188) TCGA-S9-A6WL-01 2 118865866 118865867 AA - INSIG2 Frame_Shift_Del p.K216Sfs*30 0.12 TCGA-S9-A6WL-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6WL-01 2 210574671 210574671 G A MAP2 Missense_Mutation p.G1589D 0.39 deleterious(0) probably_damaging(1) TCGA-S9-A6WL-01 2 212578296 212578296 T C ERBB4 Missense_Mutation p.K321E 0.47 deleterious(0.01) benign(0.338) TCGA-S9-A6WL-01 2 219507566 219507566 T C ZNF142 Missense_Mutation p.I1225V 0.35 tolerated(1) benign(0) TCGA-S9-A6WL-01 2 233322995 233322995 G A ALPI Missense_Mutation p.D354N 0.29 deleterious(0) benign(0.367) TCGA-S9-A6WL-01 2 37241030 37241033 CTCT - HEATR5B Frame_Shift_Del p.E1412Vfs*22 0.35 TCGA-S9-A6WL-01 2 3750175 3750175 G A ALLC 3'UTR 0.07 TCGA-S9-A6WL-01 2 74683365 74683367 AGG - INO80B In_Frame_Del p.E170del 0.08 TCGA-S9-A6WL-01 3 114058228 114058230 AAG - ZBTB20 In_Frame_Del p.L617del 0.39 TCGA-S9-A6WL-01 3 129291460 129291460 C T PLXND1 Silent p.T1023T 0.25 TCGA-S9-A6WL-01 3 142741380 142741380 A C U2SURP Silent p.G298G 0.13 TCGA-S9-A6WL-01 3 157154706 157154707 TT - PTX3 5'UTR 0.30 TCGA-S9-A6WL-01 3 54952872 54952872 C T LRTM1 Missense_Mutation p.G218R 0.04 deleterious(0) probably_damaging(0.986) TCGA-S9-A6WL-01 3 95374357 95374357 G A MTHFD2P1 RNA 0.04 TCGA-S9-A6WL-01 4 169383094 169383094 G A DDX60L Missense_Mutation p.T121M 0.13 deleterious(0) probably_damaging(0.993) TCGA-S9-A6WL-01 4 71346666 71346666 C T MUC7 Missense_Mutation p.R69C 0.18 deleterious(0.01) probably_damaging(0.976) TCGA-S9-A6WL-01 5 130766860 130766860 T A RAPGEF6 Missense_Mutation p.D1394V 0.04 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-S9-A6WL-01 5 134190831 134190833 AAG - C5orf24 In_Frame_Del p.K82del 0.45 TCGA-S9-A6WL-01 5 140537458 140537458 C - PCDHB17 3'UTR 0.20 TCGA-S9-A6WL-01 5 140590356 140590356 C - PCDHB12 Frame_Shift_Del p.A627Pfs*4 0.09 TCGA-S9-A6WL-01 5 54585244 54585245 AA - DHX29 Frame_Shift_Del p.L307Rfs*7 0.16 TCGA-S9-A6WL-01 6 26234788 26234788 C A HIST1H1D Missense_Mutation p.G125V 0.13 tolerated(0.12) unknown(0) TCGA-S9-A6WL-01 7 100680099 100680099 C T MUC17 Missense_Mutation p.S1801L 0.09 benign(0.32) TCGA-S9-A6WL-01 7 112424079 112424079 C T TMEM168 Missense_Mutation p.V268I 0.31 tolerated(0.12) benign(0) TCGA-S9-A6WL-01 7 143792960 143792960 G A OR2A12 Missense_Mutation p.A254T 0.12 deleterious(0.02) possibly_damaging(0.477) TCGA-S9-A6WL-01 7 149474811 149474811 C T ZNF467 5'Flank 0.23 TCGA-S9-A6WL-01 7 150269790 150269790 G A GIMAP4 Missense_Mutation p.R211H 0.09 tolerated(0.25) benign(0.018) TCGA-S9-A6WL-01 8 54142359 54142359 A G OPRK1 Missense_Mutation p.F214S 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-S9-A6WL-01 8 72756362 72756362 G A MSC Nonsense_Mutation p.Q18* 0.41 TCGA-S9-A6WL-01 9 12702411 12702414 ACAA - TYRP1 Frame_Shift_Del p.N353Vfs*31 0.18 TCGA-S9-A6WL-01 9 140356488 140356488 C T PNPLA7 Silent p.V1217V 0.26 TCGA-S9-A6WL-01 9 35060873 35060873 T G VCP Silent p.V469V 0.07 TCGA-S9-A6WL-01 X 119388487 119388487 C A ZBTB33 Nonsense_Mutation p.S406* 0.05 TCGA-S9-A6WL-01 X 19443789 19443789 C A MAP3K15 Missense_Mutation p.L433F 0.09 deleterious(0.01) possibly_damaging(0.453) TCGA-S9-A6WL-01 X 39932273 39932274 - T BCOR Frame_Shift_Ins p.H776Tfs*41 0.20 TCGA-S9-A6WM-01 10 47000104 47000104 G C GPRIN2 Missense_Mutation p.Q408H 0.10 deleterious(0) probably_damaging(0.999) TCGA-S9-A6WM-01 11 1248558 1248558 C T MUC5B Silent p.Y199Y 0.31 TCGA-S9-A6WM-01 11 130341194 130341194 C G ADAMTS15 Missense_Mutation p.S665C 0.53 deleterious(0) probably_damaging(0.999) TCGA-S9-A6WM-01 11 18159394 18159394 C T MRGPRX3 Silent p.Y215Y 0.57 TCGA-S9-A6WM-01 12 130963555 130963555 G A RIMBP2 Nonsense_Mutation p.R2* 0.49 TCGA-S9-A6WM-01 12 52695806 52695806 T A KRT86 Missense_Mutation p.S36T 0.44 tolerated(0.05) benign(0.187) TCGA-S9-A6WM-01 12 56351416 56351416 G A PMEL Missense_Mutation p.A224V 0.45 tolerated(0.53) probably_damaging(0.941) TCGA-S9-A6WM-01 12 86199652 86199652 G A RASSF9 Missense_Mutation p.R46C 0.48 deleterious(0) probably_damaging(0.95) TCGA-S9-A6WM-01 13 73320715 73320715 C T BORA Silent p.I316I 0.03 TCGA-S9-A6WM-01 14 106110875 106110875 C T IGHG2 Missense_Mutation p.V85I 0.50 deleterious(0.04) probably_damaging(0.996) TCGA-S9-A6WM-01 15 41865285 41865285 G A TYRO3 Missense_Mutation p.R654Q 0.41 deleterious(0) possibly_damaging(0.712) TCGA-S9-A6WM-01 16 19195264 19195264 G A SYT17 Missense_Mutation p.R249H 0.25 deleterious(0) possibly_damaging(0.842) TCGA-S9-A6WM-01 16 28842379 28842379 C A ATXN2L Missense_Mutation p.P436Q 0.08 tolerated(0.08) possibly_damaging(0.466) TCGA-S9-A6WM-01 16 28883967 28883967 C T SH2B1 Missense_Mutation p.S613L 0.50 deleterious(0) benign(0.113) TCGA-S9-A6WM-01 17 17718610 17718610 C T SREBF1 Missense_Mutation p.R836Q 0.41 tolerated(0.29) probably_damaging(0.981) TCGA-S9-A6WM-01 17 38907516 38907516 G A KRT25 Silent p.P244P 0.38 TCGA-S9-A6WM-01 17 61957710 61957710 G A GH2 3'UTR 0.29 TCGA-S9-A6WM-01 17 74622800 74622800 G A ST6GALNAC1 Missense_Mutation p.A415V 0.45 probably_damaging(0.911) TCGA-S9-A6WM-01 18 28576872 28576872 C T DSC3 Missense_Mutation p.R793Q 0.38 tolerated(0.32) benign(0.043) TCGA-S9-A6WM-01 18 3168873 3168873 A - MYOM1 Frame_Shift_Del p.V428Lfs*40 0.31 TCGA-S9-A6WM-01 18 61649048 61649048 G A SERPINB8 Missense_Mutation p.D134N 0.21 tolerated(0.12) benign(0.013) TCGA-S9-A6WM-01 19 1827422 1827422 G A REXO1 Missense_Mutation p.R456W 0.13 deleterious(0.02) benign(0.329) TCGA-S9-A6WM-01 19 19737465 19737465 C T LPAR2 Missense_Mutation p.R210H 0.16 tolerated(0.39) benign(0.016) TCGA-S9-A6WM-01 19 35835785 35835785 G A CD22 Missense_Mutation p.A697T 0.41 tolerated(0.06) benign(0.14) TCGA-S9-A6WM-01 19 51192618 51192618 G A SHANK1 Intron 0.23 TCGA-S9-A6WM-01 19 53644511 53644511 G C ZNF347 Missense_Mutation p.Q525E 0.02 tolerated(0.36) benign(0.261) TCGA-S9-A6WM-01 1 160709078 160709078 T - SLAMF7 5'UTR 0.38 TCGA-S9-A6WM-01 1 19992358 19992358 G A HTR6 Missense_Mutation p.A38T 0.56 deleterious(0.02) benign(0.008) TCGA-S9-A6WM-01 1 237947385 237947385 G A RYR2 Missense_Mutation p.V4125I 0.40 possibly_damaging(0.49) TCGA-S9-A6WM-01 1 27682984 27682984 C T MAP3K6 Missense_Mutation p.E1178K 0.45 tolerated(0.13) benign(0) TCGA-S9-A6WM-01 1 92528675 92528675 C T EPHX4 Silent p.D307D 0.07 TCGA-S9-A6WM-01 20 11899098 11899100 AAG - BTBD3 In_Frame_Del p.K61del 0.30 TCGA-S9-A6WM-01 2 179650719 179650719 G A TTN Silent p.S742S 0.12 TCGA-S9-A6WM-01 2 27688692 27688692 C G IFT172 Missense_Mutation p.G584R 0.41 deleterious(0) probably_damaging(0.995) TCGA-S9-A6WM-01 2 71709086 71709086 G A DYSF Silent p.T75T 0.49 TCGA-S9-A6WM-01 3 183273417 183273417 C T KLHL6 Missense_Mutation p.A9T 0.49 tolerated_low_confidence(1) benign(0.017) TCGA-S9-A6WM-01 3 37107434 37107434 C A LRRFIP2 Splice_Site p.X523_splice 0.51 TCGA-S9-A6WM-01 4 123372928 123372928 G A IL2 Silent p.S147S 0.21 TCGA-S9-A6WM-01 4 128608864 128608864 T G INTU Missense_Mutation p.L431V 0.03 tolerated(0.07) probably_damaging(0.921) TCGA-S9-A6WM-01 5 115818156 115818156 G A SEMA6A Nonsense_Mutation p.R360* 0.43 TCGA-S9-A6WM-01 5 140012294 140012294 C T CD14 Missense_Mutation p.R92Q 0.19 tolerated(0.22) benign(0.022) TCGA-S9-A6WM-01 5 140237891 140237891 G A PCDHA10 Missense_Mutation p.R753Q 0.43 tolerated_low_confidence(0.12) benign(0.016) TCGA-S9-A6WM-01 5 140559001 140559001 C T PCDHB8 Silent p.R462R 0.12 TCGA-S9-A6WM-01 5 147830775 147830775 G A HTR4 Silent p.D379D 0.36 TCGA-S9-A6WM-01 5 176824890 176824890 C T SLC34A1 Missense_Mutation p.T508M 0.39 deleterious(0) probably_damaging(0.941) TCGA-S9-A6WM-01 5 179196082 179196082 G A MAML1 Missense_Mutation p.A655T 0.15 tolerated(0.27) possibly_damaging(0.533) TCGA-S9-A6WM-01 5 33576343 33576343 G A ADAMTS12 Missense_Mutation p.T1263M 0.43 tolerated(0.1) benign(0.008) TCGA-S9-A6WM-01 6 110300977 110300977 C T GPR6 Missense_Mutation p.P221L 0.43 deleterious(0) probably_damaging(0.998) TCGA-S9-A6WM-01 6 129649474 129649474 C T LAMA2 Missense_Mutation p.P1410S 0.05 tolerated(0.22) benign(0.025) TCGA-S9-A6WM-01 6 155451307 155451307 G A TIAM2 Missense_Mutation p.R317H 0.58 tolerated(0.12) benign(0.39) TCGA-S9-A6WM-01 6 30712191 30712191 G A IER3 Silent p.I35I 0.22 TCGA-S9-A6WM-01 6 50740480 50740480 C T TFAP2D Missense_Mutation p.A421V 0.45 tolerated(0.29) benign(0.007) TCGA-S9-A6WM-01 7 100284293 100284293 G A GIGYF1 Missense_Mutation p.R225C 0.21 deleterious(0) unknown(0) TCGA-S9-A6WM-01 7 30087531 30087535 AAAAC - PLEKHA8 Frame_Shift_Del p.T134Rfs*11 0.25 TCGA-S9-A6WM-01 7 82474624 82474624 G C PCLO Missense_Mutation p.S4670C 0.30 unknown(0) TCGA-S9-A6WM-01 8 13947905 13947905 C T SGCZ 3'UTR 0.26 TCGA-S9-A6WM-01 8 24771352 24771352 C T NEFM Missense_Mutation p.R16W 0.36 deleterious(0) unknown(0) TCGA-S9-A6WM-01 8 28956707 28956707 T C KIF13B Missense_Mutation p.I1423V 0.63 tolerated(0.57) benign(0.001) TCGA-S9-A6WM-01 8 6302235 6302235 G A MCPH1 Missense_Mutation p.R331H 0.64 tolerated(0.13) possibly_damaging(0.674) TCGA-S9-A6WM-01 9 104048420 104048420 A T LPPR1 Missense_Mutation p.K96I 0.26 deleterious(0.02) probably_damaging(0.928) TCGA-S9-A6WM-01 9 140477531 140477531 C G ZMYND19 Silent p.R148R 0.40 TCGA-S9-A6WM-01 9 35615999 35615999 T C CD72 Missense_Mutation p.E210G 0.47 deleterious(0.01) possibly_damaging(0.691) TCGA-S9-A6WM-01 9 73399070 73399070 G A TRPM3 Missense_Mutation p.R367W 0.43 deleterious(0) probably_damaging(0.976) TCGA-S9-A6WM-01 9 82337427 82337427 A G TLE4 Missense_Mutation p.N683S 0.30 tolerated(0.06) possibly_damaging(0.481) TCGA-S9-A6WM-01 X 101858274 101858274 C A ARMCX5 Missense_Mutation p.S402Y 0.07 deleterious(0.04) benign(0.012) TCGA-S9-A6WM-01 X 105937249 105937249 G T RNF128 Missense_Mutation p.R6M 0.10 deleterious(0.02) benign(0.068) TCGA-S9-A6WM-01 X 119677613 119677613 T A CUL4B Nonsense_Mutation p.R427* 0.46 TCGA-S9-A6WM-01 X 123516546 123516546 T C TENM1 Missense_Mutation p.K2472E 0.36 tolerated(0.14) benign(0.071) TCGA-S9-A6WM-01 X 142717979 142717979 C T SLITRK4 Missense_Mutation p.V316I 0.36 tolerated(0.46) benign(0.008) TCGA-S9-A6WM-01 X 30577826 30577826 T C CXorf21 Missense_Mutation p.Q216R 0.22 tolerated(0.07) possibly_damaging(0.551) TCGA-S9-A6WM-01 X 69478764 69478764 C T P2RY4 Silent p.S237S 0.63 TCGA-S9-A6WM-01 X 75648839 75648839 G A MAGEE1 Silent p.T172T 0.45 TCGA-S9-A6WN-01 10 101458364 101458364 G A ENTPD7 Missense_Mutation p.D362N 0.20 deleterious(0.01) probably_damaging(0.944) TCGA-S9-A6WN-01 11 113856763 113856763 C T HTR3A Missense_Mutation p.R197C 0.22 deleterious(0) benign(0.427) TCGA-S9-A6WN-01 11 123756083 123756083 G A TMEM225 Missense_Mutation p.S17F 0.20 deleterious(0) possibly_damaging(0.831) TCGA-S9-A6WN-01 11 57947730 57947730 G T OR9Q1 Missense_Mutation p.V272L 0.23 deleterious(0.04) possibly_damaging(0.612) TCGA-S9-A6WN-01 11 67159688 67159688 C A RAD9A Missense_Mutation p.P31T 0.23 deleterious(0) probably_damaging(1) TCGA-S9-A6WN-01 12 57921956 57921957 CT - MBD6 Frame_Shift_Del p.C812Sfs*35 0.14 TCGA-S9-A6WN-01 13 33017320 33017320 G A N4BP2L2 Missense_Mutation p.P452S 0.20 tolerated(0.39) benign(0.046) TCGA-S9-A6WN-01 13 53035286 53035286 A G CKAP2 Missense_Mutation p.T110A 0.04 tolerated(0.07) benign(0.197) TCGA-S9-A6WN-01 14 24600895 24600895 A G RP11-468E2.6 Silent p.E229E 0.23 TCGA-S9-A6WN-01 14 74516767 74516767 A G CCDC176 Silent p.A385A 0.19 TCGA-S9-A6WN-01 15 20490515 20490515 G T CHEK2P2 RNA 0.08 TCGA-S9-A6WN-01 15 41120653 41120653 G A PPP1R14D Missense_Mutation p.R63W 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.898) TCGA-S9-A6WN-01 16 22444094 22444094 C T RRN3P3 RNA 0.13 TCGA-S9-A6WN-01 17 46627585 46627585 G A HOXB3 3'UTR 0.27 TCGA-S9-A6WN-01 19 18119539 18119539 G A ARRDC2 Silent p.T98T 0.22 TCGA-S9-A6WN-01 19 44248978 44248978 C T SMG9 Missense_Mutation p.G216D 0.04 deleterious(0) probably_damaging(0.995) TCGA-S9-A6WN-01 1 207639979 207639979 G A CR2 Missense_Mutation p.R56H 0.23 deleterious(0) probably_damaging(0.952) TCGA-S9-A6WN-01 1 227218139 227218141 CTT - CDC42BPA In_Frame_Del p.E1234del 0.22 TCGA-S9-A6WN-01 2 165953004 165953004 A C SCN3A Missense_Mutation p.I1422M 0.17 deleterious(0) probably_damaging(0.988) TCGA-S9-A6WN-01 2 179444038 179444038 G - TTN Frame_Shift_Del p.I22574* 0.20 TCGA-S9-A6WN-01 2 179516426 179516426 C T TTN Missense_Mutation p.V13144I 0.24 TCGA-S9-A6WN-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6WN-01 2 238270426 238270426 C T COL6A3 Missense_Mutation p.G2038R 0.15 probably_damaging(1) TCGA-S9-A6WN-01 2 70408448 70408450 AGA - C2orf42 In_Frame_Del p.F223del 0.21 TCGA-S9-A6WN-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.22 tolerated(0.21) possibly_damaging(0.893) TCGA-S9-A6WN-01 3 45751042 45751042 A G SACM1L Missense_Mutation p.D129G 0.19 tolerated(0.12) benign(0.006) TCGA-S9-A6WN-01 4 53378 53378 G A ZNF595 5'UTR 0.05 TCGA-S9-A6WN-01 4 79387504 79387504 G A FRAS1 Missense_Mutation p.G2391D 0.22 possibly_damaging(0.768) TCGA-S9-A6WN-01 5 140048330 140048330 G A WDR55 Missense_Mutation p.A172T 0.25 tolerated(0.1) benign(0.227) TCGA-S9-A6WN-01 5 54654435 54654435 G A SKIV2L2 Missense_Mutation p.R523H 0.19 deleterious(0) probably_damaging(1) TCGA-S9-A6WN-01 6 130460967 130460967 G A L3MBTL3 3'UTR 0.21 TCGA-S9-A6WN-01 6 43305258 43305261 AATT - ZNF318 Frame_Shift_Del p.N2159Lfs*51 0.25 TCGA-S9-A6WN-01 7 55260505 55260505 A G EGFR Missense_Mutation p.Y891C 0.20 deleterious(0) probably_damaging(1) TCGA-S9-A6WN-01 7 71177209 71177209 C T WBSCR17 3'UTR 0.29 TCGA-S9-A6WN-01 8 113420579 113420579 A G CSMD3 Missense_Mutation p.I1858T 0.23 tolerated(0.34) benign(0.002) TCGA-S9-A6WN-01 9 137809638 137809638 G A FCN1 Missense_Mutation p.A27V 0.27 tolerated(0.37) benign(0.005) TCGA-S9-A6WN-01 9 27949432 27949432 C T LINGO2 Missense_Mutation p.R413H 0.21 tolerated(0.27) benign(0) TCGA-S9-A6WN-01 X 119678007 119678007 A G CUL4B Missense_Mutation p.Y397H 0.19 deleterious(0) probably_damaging(1) TCGA-S9-A6WN-01 X 131208255 131208255 C A MST4 3'UTR 0.21 TCGA-S9-A6WN-01 X 147014218 147014219 - A FMR1 Frame_Shift_Ins p.A275Sfs*2 0.17 TCGA-S9-A6WN-01 X 3240986 3240986 T C MXRA5 Missense_Mutation p.I914V 0.04 tolerated(0.79) benign(0.001) TCGA-S9-A6WN-01 X 48337016 48337016 C T FTSJ1 Missense_Mutation p.S68F 0.21 tolerated(0.17) benign(0.039) TCGA-S9-A6WN-01 X 70469912 70469912 G A ZMYM3 Silent p.D405D 0.20 TCGA-S9-A6WO-01 10 123847056 123847056 C A TACC2 Missense_Mutation p.P1681T 0.13 probably_damaging(0.965) TCGA-S9-A6WO-01 10 13386920 13386920 T C SEPHS1 Missense_Mutation p.S11G 0.04 tolerated(0.22) benign(0) TCGA-S9-A6WO-01 10 37454040 37454040 A G ANKRD30A Missense_Mutation p.E618G 0.13 tolerated(0.14) possibly_damaging(0.727) TCGA-S9-A6WO-01 11 55944829 55944829 A G OR5J2 Missense_Mutation p.T246A 0.30 tolerated(0.05) benign(0.259) TCGA-S9-A6WO-01 11 56237368 56237368 G C OR5M3 Silent p.G202G 0.23 TCGA-S9-A6WO-01 12 53185104 53185104 G A KRT3 Missense_Mutation p.A474V 0.05 deleterious(0) probably_damaging(0.978) TCGA-S9-A6WO-01 14 23886516 23886516 C T MYH7 Silent p.E1455E 0.08 TCGA-S9-A6WO-01 15 56390461 56390461 G A RFX7 Missense_Mutation p.R309W 0.37 deleterious(0) probably_damaging(1) TCGA-S9-A6WO-01 15 59911450 59911450 G A GCNT3 Missense_Mutation p.R338H 0.07 deleterious(0) probably_damaging(1) TCGA-S9-A6WO-01 15 81558108 81558108 C G IL16 Missense_Mutation p.S177C 0.23 deleterious(0) probably_damaging(0.99) TCGA-S9-A6WO-01 16 66919758 66919758 C T PDP2 Missense_Mutation p.A524V 0.18 tolerated(0.06) benign(0.097) TCGA-S9-A6WO-01 17 7579415 7579415 C T TP53 Nonsense_Mutation p.W91* 0.86 TCGA-S9-A6WO-01 18 64176405 64176405 A G CDH19 Missense_Mutation p.I552T 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-S9-A6WO-01 19 39517588 39517588 G A FBXO27 Silent p.D210D 0.05 TCGA-S9-A6WO-01 1 173552695 173552695 A G SLC9C2 Missense_Mutation p.I197T 0.41 deleterious(0) possibly_damaging(0.542) TCGA-S9-A6WO-01 1 186273287 186273287 T C PRG4 Missense_Mutation p.S123P 0.26 benign(0.007) TCGA-S9-A6WO-01 1 60505832 60505832 A C C1orf87 Missense_Mutation p.S168R 0.32 tolerated(0.13) benign(0.011) TCGA-S9-A6WO-01 2 202136285 202136285 A G CASP8 Missense_Mutation p.R177G 0.14 deleterious(0.02) benign(0.011) TCGA-S9-A6WO-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6WO-01 2 71797733 71797733 G A DYSF Nonsense_Mutation p.W1030* 0.48 TCGA-S9-A6WO-01 2 80835412 80835412 A G CTNNA2 Missense_Mutation p.Q800R 0.10 deleterious(0) probably_damaging(0.979) TCGA-S9-A6WO-01 3 120360529 120360529 C T HGD Silent p.P262P 0.05 TCGA-S9-A6WO-01 4 108985490 108985490 A G LEF1 Splice_Site p.X389_splice 0.22 TCGA-S9-A6WO-01 4 8307867 8307867 G A HTRA3 3'UTR 0.34 TCGA-S9-A6WO-01 5 101595961 101595961 C T SLCO4C1 Missense_Mutation p.V362M 0.28 tolerated(0.11) benign(0.315) TCGA-S9-A6WO-01 5 123980089 123980089 T A ZNF608 Missense_Mutation p.D1324V 0.04 deleterious(0) possibly_damaging(0.894) TCGA-S9-A6WO-01 6 153076508 153076508 G C VIP Missense_Mutation p.S112T 0.25 deleterious(0.02) benign(0.08) TCGA-S9-A6WO-01 6 26234906 26234906 T A HIST1H1D Nonsense_Mutation p.K86* 0.03 TCGA-S9-A6WO-01 7 101960850 101960850 G A SH2B2 Nonsense_Mutation p.W522* 0.07 TCGA-S9-A6WO-01 7 138444521 138444521 G A ATP6V0A4 Silent p.D205D 0.06 TCGA-S9-A6WO-01 7 1516294 1516294 C G INTS1 Splice_Site p.X1688_splice 0.23 TCGA-S9-A6WO-01 7 154767623 154767623 T C PAXIP1 Missense_Mutation p.E286G 0.06 tolerated_low_confidence(0.06) benign(0.039) TCGA-S9-A6WO-01 7 2983876 2983876 C T CARD11 Silent p.A218A 0.31 TCGA-S9-A6WO-01 X 101138846 101138846 T C ZMAT1 Missense_Mutation p.Y518C 0.08 tolerated(0.07) benign(0.048) TCGA-S9-A6WO-01 X 76938678 76938679 TT - ATRX Frame_Shift_Del p.K690Tfs*10 0.38 TCGA-S9-A6WO-01 X 76939959 76939959 C T ATRX Nonsense_Mutation p.W263* 0.08 TCGA-S9-A6WP-01 10 101448501 101448501 G A ENTPD7 Missense_Mutation p.E235K 0.07 tolerated(0.83) benign(0.017) TCGA-S9-A6WP-01 10 123687478 123687478 C G ATE1 5'UTR 0.48 TCGA-S9-A6WP-01 11 129722547 129722547 C A TMEM45B Missense_Mutation p.S57Y 0.12 deleterious(0) possibly_damaging(0.873) TCGA-S9-A6WP-01 11 45949792 45949792 C T GYLTL1B Missense_Mutation p.P607S 0.39 deleterious(0.04) probably_damaging(0.943) TCGA-S9-A6WP-01 11 56468109 56468109 G C OR9G1 Silent p.V82V 0.04 TCGA-S9-A6WP-01 11 73806412 73806412 C T C2CD3 Silent p.E1007E 0.08 TCGA-S9-A6WP-01 12 53875958 53875961 TAGA - MAP3K12 Frame_Shift_Del p.S782Pfs*? 0.09 TCGA-S9-A6WP-01 14 23794442 23794444 CTT - PABPN1 Intron 0.38 TCGA-S9-A6WP-01 14 69369214 69369214 C T ACTN1 Missense_Mutation p.A248T 0.25 tolerated(0.16) possibly_damaging(0.82) TCGA-S9-A6WP-01 15 78487029 78487029 C T ACSBG1 Missense_Mutation p.R91H 0.11 tolerated(0.13) benign(0.021) TCGA-S9-A6WP-01 16 23400383 23400383 G A COG7 Missense_Mutation p.A724V 0.07 tolerated(0.1) probably_damaging(0.984) TCGA-S9-A6WP-01 16 24583552 24583553 AA - RBBP6 Frame_Shift_Del p.Q1724Gfs*18 0.30 TCGA-S9-A6WP-01 16 31371635 31371635 C T ITGAX Nonsense_Mutation p.R238* 0.36 TCGA-S9-A6WP-01 16 70975652 70975652 G A HYDIN Missense_Mutation p.A2247V 0.40 probably_damaging(0.971) TCGA-S9-A6WP-01 16 85704656 85704656 G A GSE1 Silent p.R1157R 0.12 TCGA-S9-A6WP-01 17 29556222 29556222 T A NF1 Nonsense_Mutation p.Y863* 0.38 TCGA-S9-A6WP-01 17 29562657 29562660 TGTT - NF1 Frame_Shift_Del p.F1247Ifs*18 0.22 TCGA-S9-A6WP-01 17 34105821 34105821 A C MMP28 3'UTR 0.37 TCGA-S9-A6WP-01 17 36489867 36489869 GAA - GPR179 In_Frame_Del p.F613del 0.16 TCGA-S9-A6WP-01 17 38451607 38451607 G A CDC6 Splice_Site p.X362_splice 0.36 TCGA-S9-A6WP-01 17 45016041 45016041 G A GOSR2 Missense_Mutation p.R185Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-S9-A6WP-01 19 1623982 1623982 C A TCF3 Missense_Mutation p.V173F 0.36 deleterious(0.02) possibly_damaging(0.646) TCGA-S9-A6WP-01 19 891130 891131 AT - MED16 Frame_Shift_Del p.M1? 0.27 TCGA-S9-A6WP-01 1 145103913 145103913 C T SEC22B RNA 0.14 TCGA-S9-A6WP-01 1 150935061 150935062 AG - SETDB1 Splice_Site p.X1053_splice 0.09 TCGA-S9-A6WP-01 1 166039755 166039755 G A FAM78B Missense_Mutation p.T170M 0.05 tolerated(0.2) possibly_damaging(0.844) TCGA-S9-A6WP-01 1 196227362 196227364 TTT - KCNT2 In_Frame_Del p.K1057del 0.11 TCGA-S9-A6WP-01 1 215990472 215990472 A G USH2A Missense_Mutation p.L3146P 0.45 probably_damaging(0.976) TCGA-S9-A6WP-01 1 44878318 44878320 GAA - RNF220 In_Frame_Del p.K185del 0.17 TCGA-S9-A6WP-01 1 78428470 78428471 TA - FUBP1 Frame_Shift_Del p.I443Rfs*47 0.46 TCGA-S9-A6WP-01 20 48699408 48699408 G A UBE2V1 Missense_Mutation p.S137L 0.08 deleterious(0.01) benign(0.201) TCGA-S9-A6WP-01 21 47704304 47704304 G A MCM3AP Silent p.R299R 0.05 TCGA-S9-A6WP-01 2 167263066 167263066 C T SCN7A Missense_Mutation p.R1358H 0.12 deleterious(0.02) benign(0.212) TCGA-S9-A6WP-01 2 171073874 171073874 C T MYO3B Missense_Mutation p.S191F 0.03 deleterious(0) probably_damaging(0.985) TCGA-S9-A6WP-01 2 179463401 179463401 G A TTN Intron 0.12 TCGA-S9-A6WP-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6WP-01 3 13538268 13538268 C - HDAC11 Frame_Shift_Del p.V98Lfs*14 0.32 TCGA-S9-A6WP-01 3 167189539 167189539 T C SERPINI2 Silent p.E28E 0.43 TCGA-S9-A6WP-01 3 38043319 38043319 G A VILL Missense_Mutation p.A483T 0.22 deleterious(0.03) probably_damaging(0.985) TCGA-S9-A6WP-01 5 140768348 140768348 T C PCDHGB4 Silent p.I299I 0.06 TCGA-S9-A6WP-01 5 143586416 143586416 C T KCTD16 Missense_Mutation p.P47S 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-S9-A6WP-01 5 169111328 169111328 C T DOCK2 Silent p.Y245Y 0.11 TCGA-S9-A6WP-01 6 87964919 87964920 AA - ZNF292 Frame_Shift_Del p.R527Gfs*8 0.27 TCGA-S9-A6WP-01 7 72722449 72722451 CTT - NSUN5 In_Frame_Del p.K65del 0.11 TCGA-S9-A6WP-01 8 43173619 43173619 G A POTEA RNA 0.08 TCGA-S9-A6WP-01 X 35985740 35985740 A G CXorf22 Missense_Mutation p.I535M 0.26 tolerated(0.06) benign(0.104) TCGA-S9-A6WQ-01 10 106075684 106075684 C G ITPRIP Missense_Mutation p.Q42H 0.43 deleterious(0.03) benign(0.429) TCGA-S9-A6WQ-01 11 10785379 10785379 T G CTR9 Missense_Mutation p.S383A 0.22 tolerated(0.1) possibly_damaging(0.899) TCGA-S9-A6WQ-01 11 284541 284541 C T NLRP6 Silent p.A813A 0.17 TCGA-S9-A6WQ-01 11 4843026 4843026 T G OR51F2 Missense_Mutation p.F137L 0.33 deleterious(0.03) benign(0.164) TCGA-S9-A6WQ-01 11 66243444 66243444 C T PELI3 Silent p.L406L 0.29 TCGA-S9-A6WQ-01 11 73103387 73103387 G A RELT Missense_Mutation p.A167T 0.11 tolerated(0.22) probably_damaging(1) TCGA-S9-A6WQ-01 12 53849149 53849149 G A PCBP2 Missense_Mutation p.G30R 0.32 tolerated(0.06) possibly_damaging(0.482) TCGA-S9-A6WQ-01 15 41961363 41961363 C T MGA Nonsense_Mutation p.R91* 0.05 TCGA-S9-A6WQ-01 15 73536774 73536774 T C NEO1 Missense_Mutation p.M514T 0.24 deleterious(0.02) benign(0.006) TCGA-S9-A6WQ-01 16 2012755 2012755 G A RPS2 Silent p.P177P 0.36 TCGA-S9-A6WQ-01 16 50707378 50707378 C T SNX20 Missense_Mutation p.R297Q 0.26 tolerated(0.34) benign(0.013) TCGA-S9-A6WQ-01 16 67970346 67970346 A T PSMB10 Silent p.P33P 0.19 TCGA-S9-A6WQ-01 17 16537944 16537944 C T ZNF624 Missense_Mutation p.G94R 0.22 deleterious(0) probably_damaging(0.935) TCGA-S9-A6WQ-01 17 18967234 18967234 C - SNORD3B-2 RNA 0.11 TCGA-S9-A6WQ-01 17 33498419 33498419 A G UNC45B Missense_Mutation p.I592V 0.33 tolerated(1) benign(0.001) TCGA-S9-A6WQ-01 17 7577102 7577102 C T TP53 Missense_Mutation p.G279E 0.26 deleterious(0) probably_damaging(0.999) TCGA-S9-A6WQ-01 17 7578395 7578395 G C TP53 Missense_Mutation p.H179D 0.37 deleterious(0) probably_damaging(1) TCGA-S9-A6WQ-01 18 57136753 57136753 G A CCBE1 Nonsense_Mutation p.R118* 0.38 TCGA-S9-A6WQ-01 18 9359985 9359985 C T TWSG1 Missense_Mutation p.R47W 0.09 deleterious(0) probably_damaging(0.919) TCGA-S9-A6WQ-01 19 15472604 15472604 A C AKAP8 Missense_Mutation p.I444M 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-S9-A6WQ-01 19 50910398 50910398 G A POLD1 Silent p.Q551Q 0.21 TCGA-S9-A6WQ-01 19 53644840 53644840 G T ZNF347 Nonsense_Mutation p.S415* 0.05 TCGA-S9-A6WQ-01 1 212957773 212957773 G A NSL1 Missense_Mutation p.R126C 0.22 deleterious(0.01) possibly_damaging(0.784) TCGA-S9-A6WQ-01 1 225591028 225591028 G A LBR Missense_Mutation p.R609C 0.27 deleterious(0) probably_damaging(0.984) TCGA-S9-A6WQ-01 1 24387782 24387782 C T MYOM3 Missense_Mutation p.A1318T 0.08 tolerated(0.05) benign(0.385) TCGA-S9-A6WQ-01 1 32713141 32713141 G A FAM167B Missense_Mutation p.R40Q 0.06 deleterious(0) possibly_damaging(0.704) TCGA-S9-A6WQ-01 20 21492758 21492759 CC - NKX2-2 Frame_Shift_Del p.L208Ffs*101 0.22 TCGA-S9-A6WQ-01 21 10921985 10921985 T C TPTE Silent p.G346G 0.07 TCGA-S9-A6WQ-01 21 28296628 28296628 C T ADAMTS5 Missense_Mutation p.R846H 0.07 deleterious(0.01) benign(0.411) TCGA-S9-A6WQ-01 22 50297602 50297602 G T ALG12 Missense_Mutation p.L451M 0.07 possibly_damaging(0.744) TCGA-S9-A6WQ-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A6WQ-01 2 27256953 27256953 G A TMEM214 Missense_Mutation p.S57N 0.07 tolerated(0.18) benign(0.122) TCGA-S9-A6WQ-01 4 110739221 110739221 A C GAR1 Missense_Mutation p.E115A 0.37 deleterious(0) probably_damaging(0.999) TCGA-S9-A6WQ-01 5 177422989 177422989 T C PROP1 5'UTR 0.10 TCGA-S9-A6WQ-01 6 152706891 152706891 T C SYNE1 Missense_Mutation p.H2857R 0.21 possibly_damaging(0.489) TCGA-S9-A6WQ-01 6 49583444 49583444 C T RHAG Missense_Mutation p.G178E 0.06 deleterious(0) probably_damaging(1) TCGA-S9-A6WQ-01 7 129906767 129906767 A G CPA2 Missense_Mutation p.I16V 0.11 tolerated(0.92) benign(0.002) TCGA-S9-A6WQ-01 7 156555850 156555850 G A LMBR1 Missense_Mutation p.P191S 0.07 deleterious(0) probably_damaging(1) TCGA-S9-A6WQ-01 7 55270224 55270224 C T EGFR Silent p.P1059P 0.28 TCGA-S9-A6WQ-01 9 135962226 135962226 C T CELP RNA 0.36 TCGA-S9-A6WQ-01 9 140728828 140728828 C T EHMT1 Missense_Mutation p.R1190W 0.15 deleterious(0) probably_damaging(1) TCGA-S9-A6WQ-01 X 150790022 150790022 G A PASD1 Missense_Mutation p.E126K 0.30 deleterious(0) probably_damaging(0.994) TCGA-S9-A6WQ-01 X 48687675 48687675 G A ERAS Missense_Mutation p.G48S 0.19 deleterious(0.03) probably_damaging(1) TCGA-S9-A6WQ-01 X 48772458 48772458 C G PIM2 Missense_Mutation p.G145A 0.26 tolerated(0.55) benign(0.001) TCGA-S9-A6WQ-01 X 48772535 48772535 A T PIM2 Silent p.P119P 0.27 TCGA-S9-A6WQ-01 X 70514290 70514290 T C NONO Missense_Mutation p.S188P 0.28 deleterious(0) possibly_damaging(0.857) TCGA-S9-A6WQ-01 X 72667524 72667524 G A CDX4 Silent p.K145K 0.24 TCGA-S9-A6WQ-01 X 76909650 76909659 AGCTCCGCTG - ATRX Frame_Shift_Del p.Q1416Ifs*71 0.19 TCGA-S9-A7IQ-01 12 122674761 122674761 C T LRRC43 Silent p.H249H 0.10 TCGA-S9-A7IQ-01 14 105518118 105518118 G A GPR132 Missense_Mutation p.A119V 0.14 deleterious(0) probably_damaging(0.962) TCGA-S9-A7IQ-01 15 42182318 42182318 C T SPTBN5 Missense_Mutation p.R157H 0.40 probably_damaging(0.999) TCGA-S9-A7IQ-01 15 96877599 96877599 G A NR2F2 Missense_Mutation p.R246H 0.15 deleterious(0.03) probably_damaging(0.989) TCGA-S9-A7IQ-01 16 21689897 21689897 C T OTOA Missense_Mutation p.S21L 0.06 tolerated_low_confidence(0.08) benign(0.009) TCGA-S9-A7IQ-01 17 37618565 37618566 - AC CDK12 Frame_Shift_Ins p.F83Pfs*10 0.15 TCGA-S9-A7IQ-01 17 4098228 4098228 G A ANKFY1 Intron 0.32 TCGA-S9-A7IQ-01 18 28934983 28934983 G A DSG1 Missense_Mutation p.E942K 0.07 deleterious(0) benign(0.385) TCGA-S9-A7IQ-01 19 45810787 45810787 G A CKM Missense_Mutation p.A300V 0.29 deleterious(0.01) benign(0.001) TCGA-S9-A7IQ-01 19 8160343 8160343 C T FBN3 Missense_Mutation p.G1901S 0.22 deleterious(0) probably_damaging(0.998) TCGA-S9-A7IQ-01 1 12815698 12815698 T C C1orf158 Missense_Mutation p.Y54H 0.55 deleterious(0) probably_damaging(0.976) TCGA-S9-A7IQ-01 1 173780443 173780443 G T CENPL Intron 0.07 TCGA-S9-A7IQ-01 2 11427813 11427813 T C ROCK2 Missense_Mutation p.K64R 0.33 tolerated(0.4) benign(0.007) TCGA-S9-A7IQ-01 2 203772675 203772675 C T WDR12 Missense_Mutation p.V17I 0.13 tolerated(0.13) benign(0.017) TCGA-S9-A7IQ-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7IQ-01 3 113172643 113172643 C T SPICE1 Nonsense_Mutation p.W604* 0.07 TCGA-S9-A7IQ-01 5 72863135 72863135 G A UTP15 5'UTR 0.05 TCGA-S9-A7IQ-01 6 117859903 117859903 A G DCBLD1 Missense_Mutation p.D294G 0.26 tolerated(0.33) possibly_damaging(0.728) TCGA-S9-A7IQ-01 6 36711479 36711479 C T CPNE5 Missense_Mutation p.R517H 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-S9-A7IQ-01 7 29994961 29994961 T C SCRN1 Missense_Mutation p.I79V 0.07 tolerated(0.51) benign(0.036) TCGA-S9-A7IS-01 10 100219450 100219450 T A HPSE2 Missense_Mutation p.T554S 0.31 deleterious(0) benign(0.174) TCGA-S9-A7IS-01 10 17756581 17756581 C G STAM Missense_Mutation p.S475R 0.31 deleterious(0.01) benign(0.017) TCGA-S9-A7IS-01 10 43604537 43604537 G A RET Silent p.V374V 0.39 TCGA-S9-A7IS-01 10 72358782 72358782 C T PRF1 Missense_Mutation p.R232H 0.09 deleterious(0.04) probably_damaging(0.991) TCGA-S9-A7IS-01 11 31312192 31312192 A G DCDC1 Splice_Site p.X320_splice 0.45 TCGA-S9-A7IS-01 11 45246510 45246510 G A PRDM11 3'UTR 0.54 TCGA-S9-A7IS-01 11 5248019 5248019 C A HBB Missense_Mutation p.V35F 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-S9-A7IS-01 11 5275635 5275635 C A HBG2 Missense_Mutation p.V68L 0.31 deleterious(0) benign(0.08) TCGA-S9-A7IS-01 11 62296869 62296869 A G AHNAK Missense_Mutation p.S1674P 0.23 possibly_damaging(0.504) TCGA-S9-A7IS-01 11 82877730 82877730 G A PCF11 Nonsense_Mutation p.W597* 0.36 TCGA-S9-A7IS-01 11 92535041 92535041 C T FAT3 Silent p.S2954S 0.40 TCGA-S9-A7IS-01 12 105151332 105151332 C T CHST11 Silent p.H270H 0.39 TCGA-S9-A7IS-01 12 46123891 46123892 AG - ARID2 Frame_Shift_Del p.R53Sfs*12 0.30 TCGA-S9-A7IS-01 12 862984 862984 A G WNK1 Missense_Mutation p.I85V 0.33 deleterious(0.01) unknown(0) TCGA-S9-A7IS-01 13 39263024 39263024 G A FREM2 Missense_Mutation p.G515S 0.33 deleterious(0.03) possibly_damaging(0.826) TCGA-S9-A7IS-01 15 100269717 100269717 C T LYSMD4 Missense_Mutation p.G169S 0.25 tolerated(0.2) benign(0.001) TCGA-S9-A7IS-01 15 24921057 24921057 C T NPAP1 Missense_Mutation p.R15W 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.835) TCGA-S9-A7IS-01 15 27772702 27772702 C T GABRG3 Missense_Mutation p.A330V 0.54 deleterious(0) probably_damaging(0.999) TCGA-S9-A7IS-01 15 28263615 28263615 C T OCA2 Silent p.G245G 0.12 TCGA-S9-A7IS-01 16 21031081 21031081 C T DNAH3 Missense_Mutation p.V1963M 0.09 tolerated(0.22) benign(0.069) TCGA-S9-A7IS-01 16 3140076 3140076 C T ZSCAN10 Silent p.A398A 0.44 TCGA-S9-A7IS-01 16 53288443 53288443 C T CHD9 Nonsense_Mutation p.R1319* 0.08 TCGA-S9-A7IS-01 19 51535256 51535256 C A KLK12 Silent p.L111L 0.49 TCGA-S9-A7IS-01 19 54849448 54849448 G A LILRA4 Silent p.N138N 0.32 TCGA-S9-A7IS-01 1 158815755 158815755 T C MNDA Missense_Mutation p.S317P 0.36 tolerated(0.08) benign(0.138) TCGA-S9-A7IS-01 1 173526626 173526626 C G SLC9C2 Silent p.V356V 0.04 TCGA-S9-A7IS-01 1 248525411 248525411 T C OR2T4 Missense_Mutation p.S177P 0.42 deleterious(0.02) benign(0.005) TCGA-S9-A7IS-01 1 39950322 39950322 A C MACF1 Missense_Mutation p.H5319P 0.05 probably_damaging(0.947) TCGA-S9-A7IS-01 1 67792514 67792514 A G IL12RB2 Missense_Mutation p.Y154C 0.14 tolerated(0.15) probably_damaging(0.926) TCGA-S9-A7IS-01 1 94471002 94471002 C T ABCA4 Missense_Mutation p.E2048K 0.31 tolerated(0.53) benign(0.013) TCGA-S9-A7IS-01 20 13856732 13856732 C T SEL1L2 Silent p.P352P 0.38 TCGA-S9-A7IS-01 20 23065956 23065956 G A CD93 Missense_Mutation p.R292W 0.38 deleterious(0) probably_damaging(0.975) TCGA-S9-A7IS-01 2 161030526 161030526 C T ITGB6 Missense_Mutation p.E240K 0.35 deleterious(0) probably_damaging(1) TCGA-S9-A7IS-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7IS-01 2 215823032 215823032 C A ABCA12 Missense_Mutation p.C2029F 0.05 tolerated(0.24) benign(0.135) TCGA-S9-A7IS-01 2 228221934 228221934 T G MFF 3'UTR 0.47 TCGA-S9-A7IS-01 2 234756099 234756099 T C HJURP Missense_Mutation p.S116G 0.40 deleterious(0.01) benign(0) TCGA-S9-A7IS-01 3 164792423 164792423 T C SI Missense_Mutation p.T51A 0.26 tolerated(0.34) benign(0.003) TCGA-S9-A7IS-01 3 38739124 38739124 G A SCN10A Missense_Mutation p.R1863W 0.42 deleterious(0) probably_damaging(1) TCGA-S9-A7IS-01 4 100871402 100871402 T A H2AFZ 5'UTR 0.68 TCGA-S9-A7IS-01 4 166795174 166795174 A G TLL1 Missense_Mutation p.N40D 0.66 tolerated_low_confidence(0.24) benign(0) TCGA-S9-A7IS-01 4 187540255 187540255 G A FAT1 Silent p.N2495N 0.75 TCGA-S9-A7IS-01 4 55131143 55131143 A T PDGFRA Missense_Mutation p.E229V 0.57 deleterious(0) probably_damaging(0.994) TCGA-S9-A7IS-01 4 55136847 55136847 G A PDGFRA Missense_Mutation p.G390D 0.12 deleterious(0.03) probably_damaging(0.973) TCGA-S9-A7IS-01 4 658001 658001 A T PDE6B Missense_Mutation p.E707V 0.47 deleterious(0) probably_damaging(1) TCGA-S9-A7IS-01 5 16684040 16684040 G A MYO10 Missense_Mutation p.T1332I 0.43 deleterious(0.05) probably_damaging(0.991) TCGA-S9-A7IS-01 5 172195811 172195811 G A DUSP1 Missense_Mutation p.A353V 0.47 tolerated(0.33) benign(0.001) TCGA-S9-A7IS-01 5 68863560 68863560 G T GTF2H2C Nonsense_Mutation p.E89* 0.24 TCGA-S9-A7IS-01 6 86324886 86324886 C G SYNCRIP Missense_Mutation p.G487A 0.33 tolerated(0.15) unknown(0) TCGA-S9-A7IS-01 6 93964444 93964444 T C EPHA7 Missense_Mutation p.D818G 0.30 deleterious(0) probably_damaging(0.936) TCGA-S9-A7IS-01 7 130364078 130364078 T C TSGA13 Missense_Mutation p.N101S 0.42 deleterious(0) possibly_damaging(0.486) TCGA-S9-A7IS-01 7 142239993 142239993 A G TRBV9 Missense_Mutation p.C7R 0.48 deleterious(0) possibly_damaging(0.832) TCGA-S9-A7IS-01 8 142228943 142228943 C T SLC45A4 Missense_Mutation p.A215T 0.47 tolerated(0.58) benign(0.001) TCGA-S9-A7IS-01 8 145095874 145095874 G A SPATC1 Missense_Mutation p.R391H 0.46 deleterious(0.03) probably_damaging(0.942) TCGA-S9-A7IS-01 8 39678649 39678649 G T ADAM2 Missense_Mutation p.P129T 0.28 deleterious(0) probably_damaging(0.999) TCGA-S9-A7IS-01 9 138713204 138713204 G A CAMSAP1 Silent p.S1101S 0.40 TCGA-S9-A7IS-01 9 41963905 41963905 C T RP11-204M4.2 RNA 0.11 TCGA-S9-A7IS-01 9 74355062 74355062 C A TMEM2 Missense_Mutation p.G374V 0.09 deleterious(0.02) possibly_damaging(0.757) TCGA-S9-A7IS-01 9 86294709 86294717 TTATTCAAC - UBQLN1 In_Frame_Del p.M228_N231delinsI 0.42 TCGA-S9-A7IS-01 X 119004589 119004589 C T RNF113A Missense_Mutation p.D330N 0.38 tolerated(0.09) benign(0.002) TCGA-S9-A7IS-01 X 130409952 130409952 A G IGSF1 Missense_Mutation p.L965P 0.34 deleterious(0) probably_damaging(0.93) TCGA-S9-A7IS-01 X 1585386 1585386 G A P2RY8 Silent p.I22I 0.19 TCGA-S9-A7IS-01 X 73061471 73061471 C A XIST RNA 0.07 TCGA-S9-A7IS-01 X 76920173 76920173 T - ATRX Frame_Shift_Del p.R1302Efs*44 0.35 TCGA-S9-A7IX-01 10 95072807 95072807 G A MYOF Silent p.Y1953Y 0.03 TCGA-S9-A7IX-01 10 98129890 98129890 C T TLL2 Missense_Mutation p.D949N 0.41 deleterious(0) probably_damaging(0.989) TCGA-S9-A7IX-01 11 59282742 59282742 G A OR4D9 Silent p.A119A 0.07 TCGA-S9-A7IX-01 12 10131592 10131592 G A CLEC12A Missense_Mutation p.R50H 0.36 tolerated(0.35) benign(0.081) TCGA-S9-A7IX-01 12 10962396 10962396 A G TAS2R9 Silent p.N93N 0.31 TCGA-S9-A7IX-01 12 121766164 121766164 A G ANAPC5 Missense_Mutation p.I420T 0.27 tolerated(1) probably_damaging(0.912) TCGA-S9-A7IX-01 12 50453668 50453668 C T ASIC1 Silent p.H163H 0.18 TCGA-S9-A7IX-01 12 53227629 53227629 C G KRT79 Missense_Mutation p.R139P 0.25 deleterious(0) probably_damaging(0.998) TCGA-S9-A7IX-01 13 32914649 32914649 T C BRCA2 Missense_Mutation p.S2053P 0.55 tolerated(0.2) benign(0.036) TCGA-S9-A7IX-01 13 38225434 38225434 T A TRPC4 Nonsense_Mutation p.R683* 0.43 TCGA-S9-A7IX-01 15 34394773 34394773 G A PGBD4 Missense_Mutation p.S14N 0.50 tolerated_low_confidence(0.38) unknown(0) TCGA-S9-A7IX-01 15 99192881 99192881 C T IGF1R Missense_Mutation p.S24L 0.29 tolerated(0.68) benign(0) TCGA-S9-A7IX-01 16 5055945 5055945 C T SEC14L5 Missense_Mutation p.R445W 0.33 deleterious(0) possibly_damaging(0.773) TCGA-S9-A7IX-01 17 27908355 27908355 C T GIT1 Splice_Site p.X254_splice 0.20 TCGA-S9-A7IX-01 17 29562708 29562710 AAG - NF1 In_Frame_Del p.E1264del 0.31 TCGA-S9-A7IX-01 17 40940794 40940794 G A WNK4 Silent p.P712P 0.24 TCGA-S9-A7IX-01 18 24039836 24039836 C G KCTD1 Missense_Mutation p.L121F 0.08 deleterious(0.01) benign(0.361) TCGA-S9-A7IX-01 19 50028814 50028816 GAG - FCGRT In_Frame_Del p.R325del 0.38 TCGA-S9-A7IX-01 1 149784871 149784871 G C HIST2H3D Silent p.P122P 0.27 TCGA-S9-A7IX-01 1 168282171 168282171 G A TBX19 Silent p.S426S 0.23 TCGA-S9-A7IX-01 1 198711064 198711064 G C PTPRC Missense_Mutation p.V824L 0.29 deleterious(0) probably_damaging(1) TCGA-S9-A7IX-01 1 46295175 46295175 G A MAST2 Silent p.S130S 0.29 TCGA-S9-A7IX-01 1 53377301 53377301 G A ECHDC2 Missense_Mutation p.R72W 0.06 deleterious(0) probably_damaging(0.932) TCGA-S9-A7IX-01 1 92181894 92181894 C T TGFBR3 Missense_Mutation p.G589R 0.27 tolerated(0.82) benign(0.005) TCGA-S9-A7IX-01 21 30354657 30354657 C G LTN1 Missense_Mutation p.D250H 0.29 deleterious(0) probably_damaging(0.96) TCGA-S9-A7IX-01 2 110904384 110904384 C T NPHP1 Missense_Mutation p.C489Y 0.28 deleterious(0) probably_damaging(1) TCGA-S9-A7IX-01 2 179394741 179394741 T A TTN Missense_Mutation p.T35493S 0.23 TCGA-S9-A7IX-01 2 220473305 220473305 C T STK11IP Missense_Mutation p.A546V 0.30 tolerated(1) benign(0.006) TCGA-S9-A7IX-01 3 169486095 169486095 C T ACTRT3 Missense_Mutation p.E82K 0.25 deleterious(0) probably_damaging(0.996) TCGA-S9-A7IX-01 4 70346534 70346534 G A UGT2B4 Missense_Mutation p.R469C 0.25 deleterious(0.03) benign(0.224) TCGA-S9-A7IX-01 5 140482266 140482266 C T PCDHB3 Missense_Mutation p.P678L 0.28 tolerated_low_confidence(0.12) benign(0.001) TCGA-S9-A7IX-01 6 29556722 29556722 T G OR2H2 3'UTR 0.29 TCGA-S9-A7IX-01 6 34059820 34059820 G A GRM4 Silent p.Y192Y 0.32 TCGA-S9-A7IX-01 7 128470957 128470957 G A FLNC Missense_Mutation p.R89H 0.22 deleterious(0) possibly_damaging(0.881) TCGA-S9-A7IX-01 7 55210075 55210075 T G EGFR Missense_Mutation p.L62R 0.95 deleterious(0.01) probably_damaging(0.962) TCGA-S9-A7IX-01 9 16727916 16727916 A C BNC2 Nonsense_Mutation p.L70* 0.34 TCGA-S9-A7IX-01 9 99083474 99083474 C T SLC35D2 3'UTR 0.10 TCGA-S9-A7IX-01 X 73964003 73964003 C A KIAA2022 Missense_Mutation p.G130V 0.66 deleterious(0) possibly_damaging(0.725) TCGA-S9-A7IY-01 10 101715654 101715654 C A DNMBP Missense_Mutation p.G526V 0.16 tolerated_low_confidence(0.06) benign(0.157) TCGA-S9-A7IY-01 10 127693465 127693465 G A FANK1 Silent p.A184A 0.06 TCGA-S9-A7IY-01 11 69465934 69465934 A G CCND1 Missense_Mutation p.S258G 0.44 deleterious(0.03) probably_damaging(0.978) TCGA-S9-A7IY-01 12 3701451 3701451 A G PRMT8 Missense_Mutation p.Y345C 0.35 tolerated(0.15) benign(0.004) TCGA-S9-A7IY-01 13 114312443 114312443 T A ATP4B Missense_Mutation p.E6V 0.14 deleterious(0) probably_damaging(1) TCGA-S9-A7IY-01 14 95562851 95562852 AG - DICER1 Frame_Shift_Del p.L1469Ffs*7 0.11 TCGA-S9-A7IY-01 16 58589321 58589322 - T CNOT1 Frame_Shift_Ins p.E909Rfs*14 0.17 TCGA-S9-A7IY-01 17 15878191 15878191 C G ADORA2B Silent p.P178P 0.38 TCGA-S9-A7IY-01 17 26712115 26712115 G A SARM1 Missense_Mutation p.R450H 0.07 tolerated(0.15) benign(0.059) TCGA-S9-A7IY-01 18 5410585 5410585 C T EPB41L3 Missense_Mutation p.G701R 0.23 deleterious(0) benign(0.418) TCGA-S9-A7IY-01 19 42791853 42791853 C T CIC Nonsense_Mutation p.Q247* 0.14 TCGA-S9-A7IY-01 19 42793116 42793116 T - CIC Frame_Shift_Del p.C336Wfs*33 0.15 TCGA-S9-A7IY-01 19 535886 535886 G A CDC34 Missense_Mutation p.R76Q 0.09 tolerated(0.06) benign(0.097) TCGA-S9-A7IY-01 1 35944787 35944787 A G KIAA0319L Silent p.S231S 0.65 TCGA-S9-A7IY-01 1 78430035 78430036 - G FUBP1 Frame_Shift_Ins p.I282Hfs*23 0.23 TCGA-S9-A7IY-01 22 39064094 39064094 A G CBY1 Missense_Mutation p.K12R 0.40 deleterious(0.05) possibly_damaging(0.904) TCGA-S9-A7IY-01 22 39994226 39994226 G A CACNA1I Missense_Mutation p.D103N 0.14 deleterious(0) benign(0.015) TCGA-S9-A7IY-01 2 163124706 163124706 G T IFIH1 Missense_Mutation p.P900T 0.32 deleterious(0) probably_damaging(0.993) TCGA-S9-A7IY-01 2 196642630 196642630 C T DNAH7 Missense_Mutation p.R3653H 0.43 deleterious(0) probably_damaging(1) TCGA-S9-A7IY-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7IY-01 2 242650843 242650843 G T ING5 Missense_Mutation p.D110Y 0.39 deleterious(0) probably_damaging(0.94) TCGA-S9-A7IY-01 3 49141306 49141306 A G QARS Missense_Mutation p.I122T 0.17 deleterious(0.01) benign(0.381) TCGA-S9-A7IY-01 4 2933825 2933825 G A MFSD10 Missense_Mutation p.A250V 0.32 deleterious(0.01) possibly_damaging(0.715) TCGA-S9-A7IY-01 5 37026330 37026330 G A NIPBL Splice_Site p.X1904_splice 0.32 TCGA-S9-A7IY-01 5 67591129 67591130 AA - PIK3R1 Frame_Shift_Del p.K575Dfs*26 0.09 TCGA-S9-A7IY-01 6 132194118 132194118 G A ENPP1 Missense_Mutation p.R498H 0.41 deleterious(0) probably_damaging(1) TCGA-S9-A7IY-01 6 152690656 152690656 T C SYNE1 Missense_Mutation p.N3201D 0.12 benign(0.018) TCGA-S9-A7IY-01 7 148709068 148709068 G A PDIA4 Silent p.S283S 0.06 TCGA-S9-A7IY-01 7 62752433 62752433 C A ZNF733P RNA 0.21 TCGA-S9-A7IY-01 8 146279673 146279673 A G C8orf33 3'UTR 0.36 TCGA-S9-A7IY-01 9 100117175 100117175 C A CCDC180 Missense_Mutation p.A1094D 0.12 deleterious(0) possibly_damaging(0.82) TCGA-S9-A7IZ-01 11 118516368 118516368 G A PHLDB1 Missense_Mutation p.S1139N 0.31 deleterious(0) benign(0.424) TCGA-S9-A7IZ-01 11 6913253 6913253 G C OR2D2 Missense_Mutation p.T160S 0.51 tolerated(0.25) benign(0.126) TCGA-S9-A7IZ-01 11 94532857 94532857 G A AMOTL1 Silent p.V167V 0.25 TCGA-S9-A7IZ-01 12 108589876 108589876 C T WSCD2 Silent p.Y89Y 0.34 TCGA-S9-A7IZ-01 12 121678617 121678617 C T CAMKK2 Missense_Mutation p.G551E 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.619) TCGA-S9-A7IZ-01 12 12870948 12870948 A - CDKN1B Frame_Shift_Del p.K59Sfs*12 0.32 TCGA-S9-A7IZ-01 13 36223967 36223967 G T NBEA Missense_Mutation p.R2628I 0.25 deleterious(0) benign(0.411) TCGA-S9-A7IZ-01 13 36909272 36909272 A - SPG20 Frame_Shift_Del p.F232Lfs*2 0.35 TCGA-S9-A7IZ-01 14 22192561 22192561 G A TRAV3 Silent p.V112V 0.19 TCGA-S9-A7IZ-01 14 72976895 72976895 G A RGS6 Nonsense_Mutation p.W333* 0.38 TCGA-S9-A7IZ-01 17 21825433 21825433 G A FAM27L RNA 0.33 TCGA-S9-A7IZ-01 17 48649291 48649291 C T CACNA1G Silent p.N213N 0.28 TCGA-S9-A7IZ-01 17 7577093 7577113 CGGTCTCTCCCAGGACAGGCA - TP53 In_Frame_Del p.C275_R282delinsW 0.52 TCGA-S9-A7IZ-01 19 44660574 44660574 G A ZNF234 Silent p.R135R 0.31 TCGA-S9-A7IZ-01 1 13497869 13497869 C T PRAMEF16 Missense_Mutation p.T389I 0.50 tolerated(1) probably_damaging(0.98) TCGA-S9-A7IZ-01 1 154965110 154965110 T C FLAD1 Intron 0.42 TCGA-S9-A7IZ-01 1 155171215 155171215 G T THBS3 Missense_Mutation p.S441Y 0.06 deleterious(0.01) benign(0.446) TCGA-S9-A7IZ-01 1 156626790 156626790 C A BCAN Missense_Mutation p.S704Y 0.35 deleterious(0) possibly_damaging(0.534) TCGA-S9-A7IZ-01 1 220284136 220284136 A T IARS2 Missense_Mutation p.M446L 0.16 tolerated(0.31) benign(0.019) TCGA-S9-A7IZ-01 1 82456565 82456565 T C LPHN2 Silent p.Y1316Y 0.33 TCGA-S9-A7IZ-01 1 92979278 92979278 T C EVI5 Missense_Mutation p.S790G 0.34 tolerated_low_confidence(0.27) benign(0) TCGA-S9-A7IZ-01 20 62422012 62422012 G T ZBTB46 Silent p.V33V 0.17 TCGA-S9-A7IZ-01 20 9523285 9523285 G A PAK7 Missense_Mutation p.A651V 0.29 deleterious(0) probably_damaging(0.995) TCGA-S9-A7IZ-01 21 10862768 10862768 C G IGHV1OR21-1 Missense_Mutation p.Q22E 0.11 deleterious(0.01) benign(0.373) TCGA-S9-A7IZ-01 21 47918601 47918601 C T DIP2A Silent p.V170V 0.06 TCGA-S9-A7IZ-01 2 170097528 170097528 G T LRP2 Missense_Mutation p.P1339T 0.06 probably_damaging(0.988) TCGA-S9-A7IZ-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7IZ-01 2 44931420 44931420 A C CAMKMT Splice_Site p.X126_splice 0.13 TCGA-S9-A7IZ-01 2 54128611 54128611 G A PSME4 Missense_Mutation p.P1054L 0.36 tolerated(0.2) benign(0.26) TCGA-S9-A7IZ-01 3 14220007 14220007 G C XPC Missense_Mutation p.S21C 0.14 deleterious_low_confidence(0.01) benign(0.367) TCGA-S9-A7IZ-01 3 196749984 196749984 G A MFI2 Missense_Mutation p.A163V 0.17 deleterious(0) probably_damaging(0.911) TCGA-S9-A7IZ-01 4 166924714 166924714 C A TLL1 Silent p.I268I 0.34 TCGA-S9-A7IZ-01 5 137276134 137276134 A C PKD2L2 3'UTR 0.39 TCGA-S9-A7IZ-01 5 178541201 178541201 G A ADAMTS2 Silent p.N1101N 0.10 TCGA-S9-A7IZ-01 6 80656947 80656948 - TCC ELOVL4 In_Frame_Ins p.S16_T17insR 0.15 TCGA-S9-A7IZ-01 7 100364638 100364638 G A ZAN Missense_Mutation p.A1540T 0.23 unknown(0) TCGA-S9-A7IZ-01 7 12728279 12728282 AACA - ARL4A Frame_Shift_Del p.Q136Ifs*2 0.20 TCGA-S9-A7IZ-01 8 146278468 146278468 A T C8orf33 Missense_Mutation p.E113D 0.31 deleterious(0) possibly_damaging(0.873) TCGA-S9-A7IZ-01 8 67485730 67485730 T C MYBL1 Silent p.T494T 0.55 TCGA-S9-A7IZ-01 9 132515297 132515297 G T PTGES 5'UTR 0.12 TCGA-S9-A7IZ-01 9 17298396 17298396 C T CNTLN Intron 0.56 TCGA-S9-A7IZ-01 X 117959361 117959361 G T ZCCHC12 Missense_Mutation p.V52L 0.16 tolerated(0.24) benign(0.076) TCGA-S9-A7IZ-01 X 125298906 125298906 C T DCAF12L2 Silent p.P334P 0.40 TCGA-S9-A7IZ-01 X 54475673 54475673 G A FGD1 Missense_Mutation p.T726M 0.22 tolerated(0.1) probably_damaging(0.995) TCGA-S9-A7IZ-01 X 76938929 76938929 C - ATRX Frame_Shift_Del p.E607Kfs*14 0.28 TCGA-S9-A7J0-01 10 135369378 135369378 C T SYCE1 Missense_Mutation p.V209M 0.40 tolerated(0.06) probably_damaging(0.993) TCGA-S9-A7J0-01 10 75294484 75294484 T C USP54 Missense_Mutation p.T397A 0.25 tolerated(0.07) benign(0.01) TCGA-S9-A7J0-01 11 12231056 12231056 G A MICAL2 Missense_Mutation p.R201Q 0.71 deleterious(0) probably_damaging(0.996) TCGA-S9-A7J0-01 11 124489721 124489721 A G PANX3 Missense_Mutation p.T357A 0.41 tolerated(1) benign(0.001) TCGA-S9-A7J0-01 11 18956124 18956124 C T MRGPRX1 Missense_Mutation p.A70T 0.31 tolerated(0.05) benign(0.149) TCGA-S9-A7J0-01 12 132551995 132551995 C T EP400 Silent p.P2946P 0.11 TCGA-S9-A7J0-01 14 23857416 23857416 C T MYH6 Missense_Mutation p.R1436H 0.17 deleterious(0.02) probably_damaging(0.983) TCGA-S9-A7J0-01 14 74188154 74188154 C A ELMSAN1 Missense_Mutation p.R928M 0.46 tolerated(0.1) benign(0.423) TCGA-S9-A7J0-01 16 1584241 1584241 G T TMEM204 5'UTR 0.06 TCGA-S9-A7J0-01 17 16610781 16610781 A G CCDC144A Splice_Site p.X222_splice 0.53 TCGA-S9-A7J0-01 17 39969425 39969425 G A FKBP10 Missense_Mutation p.E47K 0.48 deleterious(0.03) benign(0.194) TCGA-S9-A7J0-01 17 48703992 48703992 C T CACNA1G Silent p.S2338S 0.22 TCGA-S9-A7J0-01 17 51900882 51900882 G A KIF2B Missense_Mutation p.R163H 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-S9-A7J0-01 17 7578413 7578413 C T TP53 Missense_Mutation p.V173M 0.93 deleterious(0.02) probably_damaging(1) TCGA-S9-A7J0-01 19 40902215 40902215 C T PRX Missense_Mutation p.E682K 0.31 tolerated(0.36) possibly_damaging(0.502) TCGA-S9-A7J0-01 19 47944425 47944425 C T SLC8A2 Splice_Site p.X629_splice 0.22 TCGA-S9-A7J0-01 19 8973984 8973984 G A MUC16 Silent p.D14229D 0.33 TCGA-S9-A7J0-01 1 115258745 115258745 C G NRAS Missense_Mutation p.G13R 0.43 deleterious(0) possibly_damaging(0.534) TCGA-S9-A7J0-01 1 158151456 158151456 T C CD1D Silent p.Y91Y 0.47 TCGA-S9-A7J0-01 1 236645901 236645901 C T EDARADD Silent p.D200D 0.49 TCGA-S9-A7J0-01 1 66384510 66384510 C G PDE4B Missense_Mutation p.S91R 0.27 tolerated_low_confidence(0.24) benign(0.024) TCGA-S9-A7J0-01 20 49366587 49366587 C T PARD6B Silent p.S227S 0.40 TCGA-S9-A7J0-01 20 62164937 62164937 G A PTK6 Missense_Mutation p.R213W 0.15 tolerated(0.18) possibly_damaging(0.809) TCGA-S9-A7J0-01 2 209113113 209113113 G T IDH1 Missense_Mutation p.R132S 0.58 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-S9-A7J0-01 2 232263162 232263162 C T B3GNT7 Silent p.F244F 0.07 TCGA-S9-A7J0-01 2 29295877 29295877 A G C2orf71 Silent p.A417A 0.38 TCGA-S9-A7J0-01 2 63283331 63283331 C G OTX1 Missense_Mutation p.D315E 0.43 tolerated(0.05) unknown(0) TCGA-S9-A7J0-01 3 132948111 132948111 C G TMEM108 Intron 0.40 TCGA-S9-A7J0-01 3 3146598 3146598 G A IL5RA Missense_Mutation p.P24L 0.29 tolerated(0.09) benign(0.01) TCGA-S9-A7J0-01 3 45127296 45127296 C G CDCP1 Missense_Mutation p.R782T 0.48 deleterious(0) possibly_damaging(0.864) TCGA-S9-A7J0-01 3 49899533 49899533 G A CAMKV Missense_Mutation p.R58W 0.17 deleterious(0) probably_damaging(0.958) TCGA-S9-A7J0-01 4 52861983 52861983 T A LRRC66 Missense_Mutation p.D402V 0.13 deleterious(0) possibly_damaging(0.893) TCGA-S9-A7J0-01 4 5564756 5564756 A G EVC2 Missense_Mutation p.I1249T 0.21 tolerated(0.47) benign(0.01) TCGA-S9-A7J0-01 5 11411675 11411675 C - CTNND2 Frame_Shift_Del p.D138Tfs*194 0.31 TCGA-S9-A7J0-01 5 139740529 139740529 C T SLC4A9 Silent p.C145C 0.60 TCGA-S9-A7J0-01 5 140222719 140222719 G A PCDHA8 Missense_Mutation p.A605T 0.41 deleterious_low_confidence(0.02) probably_damaging(0.915) TCGA-S9-A7J0-01 5 150946625 150946625 C T FAT2 Missense_Mutation p.R623H 0.40 probably_damaging(0.973) TCGA-S9-A7J0-01 5 180219007 180219007 C T MGAT1 Missense_Mutation p.G322E 0.22 probably_damaging(0.999) TCGA-S9-A7J0-01 6 132938561 132938561 T A TAAR2 Nonsense_Mutation p.K262* 0.15 TCGA-S9-A7J0-01 6 30673766 30673766 G A MDC1 Missense_Mutation p.P1065L 0.42 deleterious(0.01) benign(0.202) TCGA-S9-A7J0-01 6 31604007 31604007 C T PRRC2A Silent p.P1882P 0.52 TCGA-S9-A7J0-01 7 107312617 107312617 C T SLC26A4 Silent p.V113V 0.59 TCGA-S9-A7J0-01 7 20685472 20685472 G A ABCB5 Missense_Mutation p.A258T 0.50 deleterious(0) probably_damaging(0.996) TCGA-S9-A7J0-01 7 30693147 30693147 G A CRHR2 Missense_Mutation p.R416W 0.12 deleterious(0) probably_damaging(0.961) TCGA-S9-A7J0-01 7 5105298 5105298 A G RBAK 3'UTR 0.35 TCGA-S9-A7J0-01 7 69364317 69364317 A G AUTS2 Missense_Mutation p.T119A 0.52 tolerated(0.12) benign(0.015) TCGA-S9-A7J0-01 7 91747893 91747893 C A CYP51A1 Nonsense_Mutation p.E375* 0.46 TCGA-S9-A7J0-01 8 95188826 95188826 G A CDH17 Nonsense_Mutation p.R123* 0.38 TCGA-S9-A7J0-01 9 121929632 121929632 T C BRINP1 Silent p.A672A 0.37 TCGA-S9-A7J0-01 9 36091312 36091315 CTTA - RECK Frame_Shift_Del p.Y355Vfs*24 0.43 TCGA-S9-A7J0-01 9 4118146 4118146 G T GLIS3 Silent p.P444P 1.00 TCGA-S9-A7J0-01 X 11157235 11157235 C T ARHGAP6 Silent p.A891A 0.33 TCGA-S9-A7J1-01 11 1095756 1095756 G T MUC2 Silent p.P2089P 0.12 TCGA-S9-A7J1-01 11 14515905 14515905 G C COPB1 Missense_Mutation p.L58V 0.33 tolerated(0.05) possibly_damaging(0.612) TCGA-S9-A7J1-01 12 58018904 58018906 AGG - SLC26A10 Splice_Site p.X449_splice 0.29 TCGA-S9-A7J1-01 12 99059486 99059486 A T APAF1 Missense_Mutation p.S371C 0.22 deleterious(0) probably_damaging(0.999) TCGA-S9-A7J1-01 13 88327979 88327979 A T SLITRK5 Silent p.L112L 0.36 TCGA-S9-A7J1-01 15 30664498 30664498 C A CHRFAM7A Missense_Mutation p.E125D 0.26 deleterious(0.01) possibly_damaging(0.895) TCGA-S9-A7J1-01 15 69727846 69727846 C T KIF23 Missense_Mutation p.T366M 0.20 deleterious(0) probably_damaging(0.973) TCGA-S9-A7J1-01 15 91433669 91433669 G C FES Missense_Mutation p.E425D 0.32 tolerated(0.42) benign(0.003) TCGA-S9-A7J1-01 16 70917932 70917932 G A HYDIN Silent p.D3290D 0.19 TCGA-S9-A7J1-01 17 18181116 18181116 G T TOP3A Missense_Mutation p.S900R 0.33 tolerated(0.14) benign(0.009) TCGA-S9-A7J1-01 19 42797980 42797981 TG - CIC Frame_Shift_Del p.V1345Gfs*16 0.15 TCGA-S9-A7J1-01 1 155058898 155058898 A G EFNA3 Missense_Mutation p.E199G 0.34 deleterious(0.02) benign(0.006) TCGA-S9-A7J1-01 1 162560139 162560139 G A UAP1 Missense_Mutation p.R399Q 0.06 deleterious(0) benign(0.133) TCGA-S9-A7J1-01 1 78428470 78428471 TA - FUBP1 Frame_Shift_Del p.I443Rfs*47 0.38 TCGA-S9-A7J1-01 20 62737689 62737689 C T NPBWR2 Missense_Mutation p.A166T 0.13 tolerated(0.3) benign(0.002) TCGA-S9-A7J1-01 22 45826809 45826809 C G RIBC2 Missense_Mutation p.D306E 0.23 tolerated(0.35) benign(0.084) TCGA-S9-A7J1-01 2 106694362 106694362 G A C2orf40 Missense_Mutation p.V143I 0.13 deleterious(0) possibly_damaging(0.608) TCGA-S9-A7J1-01 2 11778832 11778833 TT - GREB1 Frame_Shift_Del p.L1862Kfs*18 0.17 TCGA-S9-A7J1-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7J1-01 3 178928078 178928080 AGA - PIK3CA In_Frame_Del p.E453del 0.14 TCGA-S9-A7J1-01 3 39225411 39225411 G A XIRP1 Silent p.A1842A 0.43 TCGA-S9-A7J1-01 3 48696782 48696782 C T CELSR3 Missense_Mutation p.E1096K 0.04 deleterious(0) possibly_damaging(0.766) TCGA-S9-A7J1-01 5 75871579 75871579 G A IQGAP2 Missense_Mutation p.C148Y 0.07 deleterious(0) probably_damaging(1) TCGA-S9-A7J1-01 7 131191446 131191446 A T PODXL Missense_Mutation p.C381S 0.34 deleterious(0) probably_damaging(1) TCGA-S9-A7J1-01 7 151848004 151848004 G A KMT2C Missense_Mutation p.A4252V 0.39 benign(0.024) TCGA-S9-A7J1-01 8 145806482 145806482 G A ARHGAP39 Missense_Mutation p.T87M 0.27 deleterious(0) probably_damaging(0.95) TCGA-S9-A7J1-01 8 75937819 75937819 A G CRISPLD1 Missense_Mutation p.H428R 0.05 tolerated(0.12) benign(0.046) TCGA-S9-A7J1-01 9 78953152 78953152 C T PCSK5 Silent p.Y1558Y 0.43 TCGA-S9-A7J2-01 11 117153161 117153161 G A RNF214 Missense_Mutation p.R585H 0.53 deleterious(0) probably_damaging(0.999) TCGA-S9-A7J2-01 12 45741926 45741926 G A ANO6 Missense_Mutation p.R175Q 0.47 tolerated(0.37) benign(0.01) TCGA-S9-A7J2-01 12 48380873 48380873 C T COL2A1 Silent p.P451P 0.47 TCGA-S9-A7J2-01 15 65491077 65491077 C T CILP Missense_Mutation p.R516H 0.41 tolerated(0.08) probably_damaging(0.996) TCGA-S9-A7J2-01 19 42791715 42791715 C T CIC Missense_Mutation p.R201W 0.87 probably_damaging(1) TCGA-S9-A7J2-01 1 120302572 120302572 A T HMGCS2 Nonsense_Mutation p.Y200* 0.12 TCGA-S9-A7J2-01 1 12351052 12351052 T A VPS13D Intron 0.89 TCGA-S9-A7J2-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7J2-01 2 236706492 236706492 G A AGAP1 Missense_Mutation p.V255I 0.06 tolerated(0.1) benign(0.372) TCGA-S9-A7J2-01 3 62751626 62751626 G A CADPS Missense_Mutation p.R159W 0.34 deleterious(0) possibly_damaging(0.689) TCGA-S9-A7J2-01 6 12296198 12296198 G A EDN1 Silent p.S179S 0.06 TCGA-S9-A7J2-01 X 129155055 129155055 G - BCORL1 Frame_Shift_Del p.K1179Nfs*43 0.81 TCGA-S9-A7J2-01 X 146318444 146318444 G A MIR508 RNA 0.91 TCGA-S9-A7J3-01 10 113915554 113915554 A G GPAM Intron 0.50 TCGA-S9-A7J3-01 10 75260418 75260418 A G USP54 Missense_Mutation p.L1497P 0.24 tolerated_low_confidence(1) benign(0) TCGA-S9-A7J3-01 11 62301031 62301031 A G AHNAK Silent p.G286G 0.34 TCGA-S9-A7J3-01 11 62455807 62455807 C T LRRN4CL Silent p.V58V 0.22 TCGA-S9-A7J3-01 12 50860853 50860853 G A LARP4 Missense_Mutation p.V499I 0.06 tolerated(0.09) benign(0.013) TCGA-S9-A7J3-01 14 104638942 104638942 G A KIF26A Missense_Mutation p.V453M 0.05 deleterious(0) probably_damaging(0.995) TCGA-S9-A7J3-01 14 95035850 95035850 G A SERPINA4 Missense_Mutation p.R401Q 0.10 tolerated(0.13) possibly_damaging(0.59) TCGA-S9-A7J3-01 15 49031241 49031241 C T CEP152 Silent p.G1446G 0.09 TCGA-S9-A7J3-01 16 33647320 33647320 C T RP11-812E19.9 Missense_Mutation p.A94T 0.23 deleterious_low_confidence(0.05) benign(0.341) TCGA-S9-A7J3-01 17 5250214 5250214 C A RABEP1 Missense_Mutation p.H260N 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-S9-A7J3-01 17 9083253 9083253 C T NTN1 Missense_Mutation p.S446F 0.09 deleterious(0) probably_damaging(1) TCGA-S9-A7J3-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.43 probably_damaging(1) TCGA-S9-A7J3-01 1 180166341 180166341 A G QSOX1 3'UTR 0.25 TCGA-S9-A7J3-01 1 202124738 202124738 C T PTPN7 Splice_Site p.X236_splice 0.09 TCGA-S9-A7J3-01 1 27877971 27877971 G A AHDC1 Missense_Mutation p.T219M 0.66 deleterious_low_confidence(0.05) possibly_damaging(0.897) TCGA-S9-A7J3-01 1 78430433 78430433 C T FUBP1 Splice_Site p.X246_splice 0.14 TCGA-S9-A7J3-01 1 78430905 78430906 - T FUBP1 Frame_Shift_Ins p.R162Tfs*8 0.09 TCGA-S9-A7J3-01 20 45131690 45131691 AT - ZNF334 Frame_Shift_Del p.H96Lfs*25 0.29 TCGA-S9-A7J3-01 21 10970009 10970009 C G TPTE Missense_Mutation p.S40T 0.13 tolerated(0.6) benign(0.005) TCGA-S9-A7J3-01 21 44514659 44514661 CCT - U2AF1 In_Frame_Del p.G167del 0.14 TCGA-S9-A7J3-01 2 179429186 179429186 C T TTN Missense_Mutation p.V27225I 0.12 TCGA-S9-A7J3-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7J3-01 2 235943572 235943572 C T SH3BP4 5'UTR 0.36 TCGA-S9-A7J3-01 2 9607904 9607904 C T CPSF3 Nonsense_Mutation p.Q619* 0.08 TCGA-S9-A7J3-01 3 12783983 12783983 C T TMEM40 Missense_Mutation p.V109I 0.05 tolerated_low_confidence(0.62) benign(0.003) TCGA-S9-A7J3-01 3 12790221 12790221 G T TMEM40 Missense_Mutation p.N48K 0.28 deleterious_low_confidence(0.03) benign(0.012) TCGA-S9-A7J3-01 4 57221383 57221383 A G AASDH Silent p.Y356Y 0.10 TCGA-S9-A7J3-01 5 145610427 145610427 C - RBM27 Frame_Shift_Del p.N267Ifs*37 0.16 TCGA-S9-A7J3-01 6 158454620 158454620 T C SYNJ2 Missense_Mutation p.S207P 0.07 deleterious(0) probably_damaging(0.999) TCGA-S9-A7J3-01 7 151845755 151845755 T C KMT2C Silent p.L4419L 0.35 TCGA-S9-A7J3-01 7 99697242 99697242 T C MCM7 Silent p.Q82Q 0.38 TCGA-S9-A7J3-01 8 101287223 101287223 G A RNF19A Missense_Mutation p.R281C 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-S9-A7J3-01 8 28196963 28196963 C T PNOC 3'UTR 0.12 TCGA-S9-A7J3-01 X 129203477 129203477 G A ELF4 Nonsense_Mutation p.R329* 0.05 TCGA-S9-A7J3-01 X 15561245 15561245 T A BMX Missense_Mutation p.F555I 0.22 deleterious(0) probably_damaging(1) TCGA-S9-A7J3-01 X 44109649 44109649 C G EFHC2 Missense_Mutation p.D217H 0.15 tolerated(0.06) benign(0.257) TCGA-S9-A7QW-01 10 73767262 73767264 TCT - CHST3 In_Frame_Del p.F159del 0.42 TCGA-S9-A7QW-01 11 56230565 56230565 C T OR5M9 Missense_Mutation p.V105I 0.56 deleterious(0.01) benign(0.007) TCGA-S9-A7QW-01 12 104187730 104187730 T C NT5DC3 Missense_Mutation p.I267V 0.41 tolerated(1) benign(0.074) TCGA-S9-A7QW-01 12 12870928 12870929 - GGAAGAGGCG CDKN1B Frame_Shift_Ins p.S56Gfs*72 0.12 TCGA-S9-A7QW-01 14 62542108 62542108 A G SYT16 Missense_Mutation p.E331G 0.40 deleterious(0.01) possibly_damaging(0.77) TCGA-S9-A7QW-01 14 95057144 95057144 G T SERPINA5 Missense_Mutation p.V317F 0.35 deleterious(0.04) benign(0.1) TCGA-S9-A7QW-01 17 4579733 4579733 C T PELP1 Missense_Mutation p.E258K 0.44 possibly_damaging(0.487) TCGA-S9-A7QW-01 17 61987185 61987185 G A CSHL1 Silent p.D185D 0.04 TCGA-S9-A7QW-01 17 7578211 7578211 C T TP53 Missense_Mutation p.R213Q 0.93 deleterious(0) probably_damaging(1) TCGA-S9-A7QW-01 19 54600417 54600417 C T OSCAR Silent p.L39L 0.67 TCGA-S9-A7QW-01 19 54628008 54628008 C T PRPF31 Silent p.H276H 0.61 TCGA-S9-A7QW-01 1 12557680 12557680 C T VPS13D Silent p.D4263D 0.37 TCGA-S9-A7QW-01 1 152188048 152188048 A C HRNR Missense_Mutation p.H2019Q 0.19 unknown(0) TCGA-S9-A7QW-01 1 207867851 207867851 A T CR1L Missense_Mutation p.Y206F 0.45 tolerated(0.09) benign(0.314) TCGA-S9-A7QW-01 1 223567220 223567220 T A C1orf65 Missense_Mutation p.C135S 0.47 tolerated(0.36) benign(0.006) TCGA-S9-A7QW-01 1 52507235 52507235 T C TXNDC12 Silent p.E44E 0.48 TCGA-S9-A7QW-01 1 67292589 67292589 G A WDR78 Silent p.Y751Y 0.54 TCGA-S9-A7QW-01 22 50636345 50636345 C T TRABD Silent p.I255I 0.44 TCGA-S9-A7QW-01 2 128747140 128747140 G C SAP130 Nonsense_Mutation p.S619* 0.59 TCGA-S9-A7QW-01 2 179598483 179598483 G A TTN Silent p.D5211D 0.05 TCGA-S9-A7QW-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7QW-01 2 25463521 25463521 T C DNMT3A Missense_Mutation p.K721E 0.49 deleterious(0.02) probably_damaging(0.991) TCGA-S9-A7QW-01 2 55750876 55750876 G T CCDC104 Missense_Mutation p.G67V 0.09 deleterious(0.02) benign(0.143) TCGA-S9-A7QW-01 3 130947384 130947384 A G NEK11 Missense_Mutation p.D471G 0.04 deleterious(0.03) probably_damaging(0.96) TCGA-S9-A7QW-01 3 141161851 141161851 C T ZBTB38 Silent p.D207D 0.45 TCGA-S9-A7QW-01 3 14922109 14922109 G A FGD5 Missense_Mutation p.A897T 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-S9-A7QW-01 3 49153204 49153204 T A USP19 Missense_Mutation p.T547S 0.29 tolerated(0.18) benign(0.038) TCGA-S9-A7QW-01 4 41941241 41941241 C T TMEM33 Missense_Mutation p.R57C 0.40 deleterious(0) probably_damaging(0.998) TCGA-S9-A7QW-01 5 23526937 23526937 T G PRDM9 Nonsense_Mutation p.Y580* 0.46 TCGA-S9-A7QW-01 5 70308494 70308494 G A NAIP Silent p.A83A 0.37 TCGA-S9-A7QW-01 5 71752252 71752252 G A ZNF366 Silent p.D501D 0.40 TCGA-S9-A7QW-01 6 160666576 160666576 C T SLC22A2 Missense_Mutation p.R320H 0.29 tolerated(0.09) benign(0.001) TCGA-S9-A7QW-01 6 52268806 52268806 C T PAQR8 Silent p.P265P 0.50 TCGA-S9-A7QW-01 7 72732892 72732892 G A TRIM50 Missense_Mutation p.R219W 0.17 deleterious(0.03) possibly_damaging(0.582) TCGA-S9-A7QW-01 7 73513561 73513561 G T LIMK1 Missense_Mutation p.V201F 0.16 deleterious(0.01) possibly_damaging(0.669) TCGA-S9-A7QW-01 7 99474198 99474198 G A OR2AE1 Silent p.S153S 0.24 TCGA-S9-A7QW-01 8 146068294 146068294 G A ZNF7 Missense_Mutation p.R601K 0.33 deleterious(0.04) benign(0.351) TCGA-S9-A7QW-01 9 132620334 132620334 C T USP20 Silent p.A47A 0.20 TCGA-S9-A7QW-01 9 136029210 136029210 C T GBGT1 Silent p.G266G 0.23 TCGA-S9-A7QW-01 9 34611084 34611084 G A RPP25L Silent p.C70C 0.06 TCGA-S9-A7QW-01 X 105450235 105450235 T C MUM1L1 Silent p.S270S 0.45 TCGA-S9-A7QW-01 X 149905114 149905114 A T MTMR1 Missense_Mutation p.E368D 0.47 deleterious(0.04) benign(0.039) TCGA-S9-A7QW-01 X 153032991 153032991 G C PLXNB3 Missense_Mutation p.A260P 0.61 deleterious(0) probably_damaging(0.983) TCGA-S9-A7QW-01 X 32456373 32456373 C T DMD Silent p.R1352R 0.04 TCGA-S9-A7QW-01 X 41069807 41069807 A C USP9X Missense_Mutation p.L1687F 0.06 deleterious(0.03) probably_damaging(0.996) TCGA-S9-A7QW-01 X 70469386 70469386 A G ZMYM3 Silent p.P465P 0.43 TCGA-S9-A7QW-01 X 76939556 76939557 - A ATRX Frame_Shift_Ins p.V398Cfs*4 0.32 TCGA-S9-A7QX-01 10 70645061 70645061 A G STOX1 Silent p.R503R 0.41 TCGA-S9-A7QX-01 11 89867841 89867841 G A NAALAD2 5'UTR 0.25 TCGA-S9-A7QX-01 12 442740 442740 G C KDM5A Silent p.A522A 0.06 TCGA-S9-A7QX-01 17 39551856 39551856 C A KRT31 Missense_Mutation p.C203F 0.43 deleterious(0.01) possibly_damaging(0.74) TCGA-S9-A7QX-01 17 40354366 40354366 G A STAT5B Silent p.Y743Y 0.33 TCGA-S9-A7QX-01 17 7577610 7577610 T C TP53 Splice_Site p.X225_splice 0.80 TCGA-S9-A7QX-01 17 76554202 76554202 G A DNAH17 Silent p.G722G 0.13 TCGA-S9-A7QX-01 19 40901999 40901999 G A PRX Missense_Mutation p.R754W 0.35 deleterious(0) possibly_damaging(0.835) TCGA-S9-A7QX-01 19 50243411 50243411 G A TSKS Silent p.H509H 0.43 TCGA-S9-A7QX-01 19 55800958 55800958 C T BRSK1 Missense_Mutation p.A143V 0.42 deleterious(0.01) possibly_damaging(0.717) TCGA-S9-A7QX-01 19 9047644 9047644 G T MUC16 Missense_Mutation p.D11329E 0.10 benign(0.007) TCGA-S9-A7QX-01 1 174926682 174926682 A G RABGAP1L Missense_Mutation p.Y810C 0.29 deleterious(0.01) probably_damaging(0.91) TCGA-S9-A7QX-01 1 207287489 207287489 G A C4BPA Missense_Mutation p.D63N 0.35 tolerated(1) benign(0.001) TCGA-S9-A7QX-01 2 136467088 136467088 C A R3HDM1 Missense_Mutation p.Q814K 0.07 deleterious(0.05) benign(0.027) TCGA-S9-A7QX-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7QX-01 3 114058161 114058161 G A ZBTB20 Silent p.C639C 0.42 TCGA-S9-A7QX-01 3 151085530 151085530 G A MED12L Missense_Mutation p.A1107T 0.39 deleterious(0) probably_damaging(0.986) TCGA-S9-A7QX-01 3 167039968 167039968 T C ZBBX Missense_Mutation p.N307S 0.38 tolerated(0.17) benign(0.059) TCGA-S9-A7QX-01 4 3318022 3318022 G T RGS12 Missense_Mutation p.C42F 0.45 deleterious(0) probably_damaging(1) TCGA-S9-A7QX-01 5 147693711 147693711 C T SPINK7 Missense_Mutation p.P46S 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-S9-A7QX-01 6 7240815 7240815 T A RREB1 Missense_Mutation p.V1318D 0.54 tolerated(0.62) benign(0.137) TCGA-S9-A7QX-01 7 140125837 140125837 G A RAB19 Missense_Mutation p.A181T 0.20 tolerated(0.45) benign(0.172) TCGA-S9-A7QX-01 7 23236324 23236324 A G NUPL2 Missense_Mutation p.N183S 0.41 tolerated(0.4) benign(0.023) TCGA-S9-A7QX-01 7 81591323 81591323 A T CACNA2D1 Missense_Mutation p.D951E 0.30 tolerated(0.84) benign(0.013) TCGA-S9-A7QX-01 7 98984335 98984335 A T ARPC1B Missense_Mutation p.E31V 0.20 tolerated(0.07) possibly_damaging(0.514) TCGA-S9-A7QX-01 8 120233832 120233832 C T MAL2 Silent p.F46F 0.13 TCGA-S9-A7QX-01 8 145746678 145746678 A G LRRC14 Missense_Mutation p.D433G 0.37 deleterious(0) possibly_damaging(0.727) TCGA-S9-A7QX-01 8 21986639 21986639 C A HR Missense_Mutation p.E15D 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-S9-A7QX-01 9 139910252 139910252 C A ABCA2 Missense_Mutation p.R1130L 0.54 deleterious(0) probably_damaging(1) TCGA-S9-A7QX-01 9 18657637 18657637 A G ADAMTSL1 Missense_Mutation p.I279V 0.50 tolerated(0.83) benign(0.001) TCGA-S9-A7QX-01 X 153222180 153222180 G A HCFC1 Missense_Mutation p.T844I 0.75 deleterious(0) benign(0.125) TCGA-S9-A7QX-01 X 54209078 54209078 C T FAM120C Missense_Mutation p.R185H 0.36 deleterious(0.01) probably_damaging(0.917) TCGA-S9-A7QX-01 X 76939883 76939883 G - ATRX Frame_Shift_Del p.Q289Sfs*10 0.27 TCGA-S9-A7QY-01 11 123811091 123811091 C T OR4D5 Silent p.Y256Y 0.06 TCGA-S9-A7QY-01 11 2482823 2482823 C T KCNQ1 Intron 0.09 TCGA-S9-A7QY-01 11 48328584 48328584 C T OR4S1 Silent p.I270I 0.30 TCGA-S9-A7QY-01 12 107083127 107083127 A G RFX4 Silent p.R227R 0.34 TCGA-S9-A7QY-01 12 31632836 31632836 C T DENND5B Silent p.P197P 0.30 TCGA-S9-A7QY-01 12 62104077 62104077 G A FAM19A2 3'UTR 0.26 TCGA-S9-A7QY-01 12 7984361 7984361 C T SLC2A14 Splice_Site p.X61_splice 0.34 TCGA-S9-A7QY-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-S9-A7QY-01 15 99678146 99678146 G A TTC23 3'UTR 0.10 TCGA-S9-A7QY-01 16 21982886 21982886 T G UQCRC2 Missense_Mutation p.F237L 0.42 tolerated(0.15) benign(0.003) TCGA-S9-A7QY-01 16 81015424 81015424 C A CMC2 Missense_Mutation p.C47F 0.18 deleterious(0) probably_damaging(1) TCGA-S9-A7QY-01 17 4905406 4905406 C T KIF1C Missense_Mutation p.S139F 0.05 deleterious(0) probably_damaging(0.926) TCGA-S9-A7QY-01 17 62291171 62291171 G A TEX2 Missense_Mutation p.P136L 0.32 tolerated_low_confidence(0.06) possibly_damaging(0.56) TCGA-S9-A7QY-01 18 28651576 28651576 A C DSC2 Missense_Mutation p.L707R 0.05 deleterious(0) probably_damaging(0.999) TCGA-S9-A7QY-01 19 4446151 4446151 G A UBXN6 Silent p.F365F 0.33 TCGA-S9-A7QY-01 19 57803125 57803125 G T ZNF460 Missense_Mutation p.D406Y 0.36 tolerated(0.11) probably_damaging(0.998) TCGA-S9-A7QY-01 1 118657953 118657953 G A SPAG17 Nonsense_Mutation p.R143* 0.08 TCGA-S9-A7QY-01 1 171765758 171765758 G A METTL13 Silent p.L654L 0.30 TCGA-S9-A7QY-01 1 22150181 22150181 C T HSPG2 Missense_Mutation p.G4311S 0.09 benign(0.256) TCGA-S9-A7QY-01 1 44035429 44035429 G A PTPRF Missense_Mutation p.R183H 0.09 deleterious(0) probably_damaging(1) TCGA-S9-A7QY-01 1 47325399 47325399 G A CYP4Z2P RNA 0.06 TCGA-S9-A7QY-01 1 52940852 52940852 G A ZCCHC11 Silent p.H793H 0.11 TCGA-S9-A7QY-01 1 85331538 85331538 T C LPAR3 Missense_Mutation p.N89S 0.48 tolerated(0.06) benign(0.281) TCGA-S9-A7QY-01 20 25187970 25187970 A T ENTPD6 Missense_Mutation p.M105L 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-S9-A7QY-01 20 44569128 44569128 G T PCIF1 Silent p.G88G 0.19 TCGA-S9-A7QY-01 2 128941352 128941352 A G UGGT1 Missense_Mutation p.N1450D 0.36 deleterious(0) probably_damaging(0.999) TCGA-S9-A7QY-01 2 198361807 198361807 C T HSPD1 Intron 0.06 TCGA-S9-A7QY-01 2 233349567 233349567 C T ECEL1 Missense_Mutation p.V335I 0.09 tolerated(0.88) benign(0.002) TCGA-S9-A7QY-01 2 27850426 27850426 C G CCDC121 Missense_Mutation p.E243Q 0.30 deleterious(0.02) benign(0.017) TCGA-S9-A7QY-01 3 101090887 101090887 C T SENP7 Missense_Mutation p.G254D 0.12 tolerated(0.71) benign(0.004) TCGA-S9-A7QY-01 3 14220082 14220082 G A LSM3 5'UTR 0.11 TCGA-S9-A7QY-01 3 49083858 49083858 C T QRICH1 Silent p.K557K 0.08 TCGA-S9-A7QY-01 4 186295495 186295495 G A LRP2BP Nonsense_Mutation p.R151* 0.06 TCGA-S9-A7QY-01 4 47560219 47560219 C T ATP10D Missense_Mutation p.S788F 0.08 deleterious(0) probably_damaging(0.948) TCGA-S9-A7QY-01 5 102519070 102519070 T C PPIP5K2 Silent p.L1020L 0.23 TCGA-S9-A7QY-01 5 128994350 128994350 A G ADAMTS19 Missense_Mutation p.E776G 0.05 deleterious(0) probably_damaging(0.999) TCGA-S9-A7QY-01 5 172590905 172590905 G A BNIP1 Missense_Mutation p.R266Q 0.30 deleterious(0) probably_damaging(1) TCGA-S9-A7QY-01 5 176316702 176316702 C T HK3 Missense_Mutation p.G225D 0.11 deleterious(0) probably_damaging(0.994) TCGA-S9-A7QY-01 5 68470917 68470917 C T CCNB1 Missense_Mutation p.R307W 0.35 deleterious(0.02) benign(0.17) TCGA-S9-A7QY-01 5 7520964 7520964 C T ADCY2 Silent p.S174S 0.37 TCGA-S9-A7QY-01 6 139264996 139264996 T G REPS1 Missense_Mutation p.I304L 0.31 deleterious(0) probably_damaging(0.996) TCGA-S9-A7QY-01 6 31948281 31948281 T C STK19 Missense_Mutation p.L290P 0.05 deleterious(0) probably_damaging(0.999) TCGA-S9-A7QY-01 6 38790794 38790794 G A DNAH8 Missense_Mutation p.R1018H 0.35 possibly_damaging(0.512) TCGA-S9-A7QY-01 6 43305390 43305390 C T ZNF318 Missense_Mutation p.G2116S 0.09 possibly_damaging(0.801) TCGA-S9-A7QY-01 7 127983808 127983808 A C RBM28 Missense_Mutation p.S14A 0.13 tolerated(0.06) possibly_damaging(0.589) TCGA-S9-A7QY-01 7 135614721 135614721 C A MTPN Missense_Mutation p.A104S 0.07 tolerated(0.42) benign(0.004) TCGA-S9-A7QY-01 7 42011989 42011989 A G GLI3 Missense_Mutation p.S684P 0.07 tolerated(0.15) possibly_damaging(0.833) TCGA-S9-A7QY-01 8 101075815 101075815 G A RGS22 Missense_Mutation p.P394L 0.11 tolerated(0.18) benign(0.003) TCGA-S9-A7QY-01 X 131348282 131348282 G T RAP2C Missense_Mutation p.L156I 0.06 tolerated(0.54) benign(0.023) TCGA-S9-A7QY-01 X 134707958 134707958 C T DDX26B Missense_Mutation p.T534M 0.07 tolerated(0.15) benign(0.009) TCGA-S9-A7QY-01 X 153459015 153459015 C T OPN1MW Silent p.F287F 0.11 TCGA-S9-A7QY-01 X 153641818 153641818 G T TAZ Splice_Site p.X95_splice 0.32 TCGA-S9-A7QY-01 X 22094543 22094543 C T PHEX Silent p.T129T 0.34 TCGA-S9-A7QY-01 X 27998610 27998610 C T DCAF8L1 Missense_Mutation p.R281H 0.09 tolerated(0.1) benign(0.009) TCGA-S9-A7QY-01 X 41333636 41333636 C T NYX Silent p.N310N 0.26 TCGA-S9-A7QY-01 X 49370700 49370700 C T GAGE1 3'UTR 0.36 TCGA-S9-A7QY-01 X 6995447 6995447 G A HDHD1 Silent p.P131P 0.12 TCGA-S9-A7QZ-01 10 100150628 100150628 C T PYROXD2 Intron 0.18 TCGA-S9-A7QZ-01 10 12940560 12940562 CTT - CCDC3 In_Frame_Del p.K223del 0.22 TCGA-S9-A7QZ-01 10 16989236 16989237 AA - CUBN Frame_Shift_Del p.F1780Yfs*20 0.14 TCGA-S9-A7QZ-01 11 57564168 57564168 T C CTNND1 Silent p.G220G 0.24 TCGA-S9-A7QZ-01 12 18891211 18891211 T A CAPZA3 Silent p.L3L 0.19 TCGA-S9-A7QZ-01 12 32136666 32136668 CTT - KIAA1551 In_Frame_Del p.S927del 0.25 TCGA-S9-A7QZ-01 12 51213443 51213445 AAG - ATF1 In_Frame_Del p.K235del 0.09 TCGA-S9-A7QZ-01 12 55846632 55846632 T C OR6C2 Missense_Mutation p.V212A 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-S9-A7QZ-01 12 94805603 94805603 T A CCDC41 Missense_Mutation p.K65M 0.11 deleterious(0) probably_damaging(0.999) TCGA-S9-A7QZ-01 14 59798010 59798010 C A DAAM1 Silent p.L548L 0.48 TCGA-S9-A7QZ-01 14 75265962 75265963 CA - YLPM1 Frame_Shift_Del p.Q1322Vfs*3 0.09 TCGA-S9-A7QZ-01 15 41749919 41749920 AG - RTF1 Frame_Shift_Del p.D170Lfs*6 0.19 TCGA-S9-A7QZ-01 15 42005362 42005362 C T MGA Missense_Mutation p.T1033I 0.17 deleterious(0.01) benign(0.081) TCGA-S9-A7QZ-01 15 63335041 63335043 AAG - TPM1 In_Frame_Del p.K7del 0.18 TCGA-S9-A7QZ-01 15 75498581 75498581 G A C15orf39 Silent p.A64A 0.15 TCGA-S9-A7QZ-01 16 11773509 11773512 TCTC - TXNDC11 Frame_Shift_Del p.E806Sfs*4 0.23 TCGA-S9-A7QZ-01 16 3079314 3079316 CTC - CCDC64B In_Frame_Del p.E358del 0.17 TCGA-S9-A7QZ-01 16 4164385 4164387 CTC - ADCY9 In_Frame_Del p.E353del 0.25 TCGA-S9-A7QZ-01 16 66956055 66956055 C T RRAD Missense_Mutation p.R284H 0.07 deleterious(0.02) probably_damaging(0.91) TCGA-S9-A7QZ-01 17 1384090 1384090 G T MYO1C Silent p.I239I 0.27 TCGA-S9-A7QZ-01 17 19251097 19251097 C T B9D1 Missense_Mutation p.R114Q 0.19 tolerated(0.24) benign(0.036) TCGA-S9-A7QZ-01 17 56440939 56440939 C T RNF43 Missense_Mutation p.G133E 0.04 deleterious(0) probably_damaging(1) TCGA-S9-A7QZ-01 17 7476160 7476160 A C EIF4A1 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0.03) benign(0.014) TCGA-S9-A7QZ-01 17 7578275 7578277 GAG - TP53 In_Frame_Del p.P191del 0.24 TCGA-S9-A7QZ-01 18 13095576 13095578 CTC - CEP192 In_Frame_Del p.P2111del 0.20 TCGA-S9-A7QZ-01 19 15918425 15918425 G A OR10H1 Silent p.C141C 0.10 TCGA-S9-A7QZ-01 19 16038092 16038092 G A CYP4F11 Missense_Mutation p.T152M 0.10 deleterious(0.01) probably_damaging(0.957) TCGA-S9-A7QZ-01 19 1791999 1791999 C G ATP8B3 Splice_Site p.X730_splice 0.42 TCGA-S9-A7QZ-01 19 307470 307470 G A MIER2 Missense_Mutation p.P422L 0.27 tolerated(0.18) benign(0.003) TCGA-S9-A7QZ-01 19 34957913 34957913 T A UBA2 Missense_Mutation p.S579T 0.12 tolerated(0.21) benign(0.067) TCGA-S9-A7QZ-01 19 42796461 42796462 TG - CIC Frame_Shift_Del p.V1007Afs*143 0.38 TCGA-S9-A7QZ-01 19 53345269 53345272 TCTT - ZNF468 Frame_Shift_Del p.K92Tfs*21 0.10 TCGA-S9-A7QZ-01 19 6665024 6665024 C T TNFSF14 Silent p.G212G 0.06 TCGA-S9-A7QZ-01 1 100480866 100480866 G A SLC35A3 Missense_Mutation p.G215R 0.52 deleterious(0) probably_damaging(0.973) TCGA-S9-A7QZ-01 1 16767279 16767279 C G NECAP2 Missense_Mutation p.S8W 0.30 deleterious(0) probably_damaging(0.997) TCGA-S9-A7QZ-01 1 169100780 169100784 AAGTT - ATP1B1 Frame_Shift_Del p.V301Efs*11 0.19 TCGA-S9-A7QZ-01 1 201010635 201010635 G A CACNA1S Silent p.L1711L 0.21 TCGA-S9-A7QZ-01 1 212118272 212118272 T A INTS7 Missense_Mutation p.I819F 0.10 deleterious(0) possibly_damaging(0.572) TCGA-S9-A7QZ-01 1 238050813 238050813 C T ZP4 Missense_Mutation p.R201Q 0.21 tolerated(0.18) benign(0.215) TCGA-S9-A7QZ-01 1 78426109 78426111 AGG - FUBP1 In_Frame_Del p.P472del 0.60 TCGA-S9-A7QZ-01 1 78430386 78430386 A - FUBP1 Frame_Shift_Del p.F261Sfs*12 0.13 TCGA-S9-A7QZ-01 1 86959231 86959231 A T CLCA1 Silent p.V543V 0.40 TCGA-S9-A7QZ-01 2 113418740 113418740 A G SLC20A1 Silent p.A605A 0.11 TCGA-S9-A7QZ-01 2 190541787 190541788 AA - ANKAR Frame_Shift_Del p.K191Rfs*7 0.19 TCGA-S9-A7QZ-01 2 207621661 207621661 A G MDH1B Missense_Mutation p.L125P 0.14 tolerated(0.12) benign(0.009) TCGA-S9-A7QZ-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7QZ-01 2 238280668 238280668 C T COL6A3 Missense_Mutation p.R1331H 0.17 probably_damaging(0.998) TCGA-S9-A7QZ-01 2 74477594 74477594 G A SLC4A5 Missense_Mutation p.P510L 0.06 tolerated(0.76) benign(0.007) TCGA-S9-A7QZ-01 3 101283849 101283851 AAG - TRMT10C In_Frame_Del p.E77del 0.15 TCGA-S9-A7QZ-01 3 122578991 122578991 A G DIRC2 Silent p.S360S 0.31 TCGA-S9-A7QZ-01 3 142281276 142281276 T C ATR Missense_Mutation p.E323G 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.682) TCGA-S9-A7QZ-01 3 193002701 193002702 AC - ATP13A5 Splice_Site p.X1076_splice 0.12 TCGA-S9-A7QZ-01 4 104066385 104066385 T C CENPE Missense_Mutation p.K1560R 0.20 benign(0.051) TCGA-S9-A7QZ-01 4 69403357 69403357 T A UGT2B17 Nonsense_Mutation p.K527* 0.31 TCGA-S9-A7QZ-01 4 69795658 69795658 T G UGT2A3 Missense_Mutation p.H486P 0.07 deleterious(0) benign(0.425) TCGA-S9-A7QZ-01 5 140595357 140595359 CAA - PCDHB13 In_Frame_Del p.N555del 0.16 TCGA-S9-A7QZ-01 5 42718951 42718951 G A GHR Missense_Mutation p.V448I 0.24 tolerated(0.34) benign(0.02) TCGA-S9-A7QZ-01 6 28963010 28963010 G A ZNF311 Missense_Mutation p.T590M 0.07 tolerated(0.06) benign(0.115) TCGA-S9-A7QZ-01 6 51824709 51824709 A T PKHD1 Missense_Mutation p.L1956Q 0.03 deleterious(0) probably_damaging(1) TCGA-S9-A7QZ-01 6 75875253 75875255 CTC - COL12A1 In_Frame_Del p.G984del 0.26 TCGA-S9-A7QZ-01 7 44737090 44737090 G A OGDH Missense_Mutation p.V725M 0.28 deleterious(0) probably_damaging(1) TCGA-S9-A7QZ-01 8 110457474 110457474 G C PKHD1L1 Missense_Mutation p.E1792D 0.09 tolerated(1) benign(0.002) TCGA-S9-A7QZ-01 8 132968029 132968031 CTT - EFR3A In_Frame_Del p.S220del 0.08 TCGA-S9-A7QZ-01 8 23702537 23702537 C A STC1 Missense_Mutation p.V164F 0.06 deleterious(0.01) benign(0.139) TCGA-S9-A7QZ-01 8 48852241 48852241 G A PRKDC Missense_Mutation p.A328V 0.16 benign(0.373) TCGA-S9-A7QZ-01 8 66695041 66695041 G A PDE7A Missense_Mutation p.T59I 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-S9-A7QZ-01 9 117106023 117106023 C G AKNA Missense_Mutation p.C1241S 0.09 deleterious(0) probably_damaging(0.997) TCGA-S9-A7QZ-01 9 129642336 129642336 G A ZBTB34 Missense_Mutation p.E216K 0.10 tolerated(0.35) possibly_damaging(0.827) TCGA-S9-A7QZ-01 9 135251350 135251350 G A TTF1 Silent p.H890H 0.07 TCGA-S9-A7QZ-01 X 119580172 119580173 AA - LAMP2 Frame_Shift_Del p.F284Cfs*7 0.16 TCGA-S9-A7QZ-01 X 127185177 127185180 ATCT - ACTRT1 Frame_Shift_Del p.R336Afs*11 0.47 TCGA-S9-A7R1-01 11 4703857 4703857 G A OR51E2 Missense_Mutation p.P29S 0.30 deleterious(0.01) possibly_damaging(0.894) TCGA-S9-A7R1-01 11 71906326 71906326 G A FOLR1 Nonsense_Mutation p.W60* 0.47 TCGA-S9-A7R1-01 13 29855958 29855958 G A MTUS2 Missense_Mutation p.R931H 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-S9-A7R1-01 14 81945999 81945999 T C SEL1L Missense_Mutation p.K711R 0.40 deleterious(0.05) benign(0.126) TCGA-S9-A7R1-01 15 91310185 91310185 A G BLM Missense_Mutation p.T747A 0.15 tolerated(0.85) benign(0.004) TCGA-S9-A7R1-01 16 3486744 3486744 C T ZNF597 Missense_Mutation p.D319N 0.08 tolerated(0.41) benign(0.017) TCGA-S9-A7R1-01 17 30207649 30207649 G A UTP6 Missense_Mutation p.R304W 0.37 deleterious(0) possibly_damaging(0.677) TCGA-S9-A7R1-01 1 118413222 118413222 T C GDAP2 Missense_Mutation p.Y488C 0.14 deleterious(0) benign(0.077) TCGA-S9-A7R1-01 1 33235952 33235952 G A KIAA1522 Missense_Mutation p.R391H 0.19 deleterious(0.05) unknown(0) TCGA-S9-A7R1-01 2 102782633 102782633 G A IL1R1 Missense_Mutation p.V183M 0.55 deleterious(0.03) benign(0.086) TCGA-S9-A7R1-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7R1-01 3 101384637 101384637 C T ZBTB11 Missense_Mutation p.S265N 0.37 deleterious(0) probably_damaging(1) TCGA-S9-A7R1-01 4 122602906 122602906 G T ANXA5 Missense_Mutation p.T105K 0.38 deleterious(0) probably_damaging(0.991) TCGA-S9-A7R1-01 7 148767777 148767777 C T ZNF786 Missense_Mutation p.G696D 0.06 deleterious(0.04) probably_damaging(1) TCGA-S9-A7R1-01 7 44613434 44613434 C T DDX56 Splice_Site p.X20_splice 0.08 TCGA-S9-A7R1-01 7 82584521 82584523 CTC - PCLO In_Frame_Del p.E1916del 0.12 TCGA-S9-A7R1-01 8 24772171 24772171 G A NEFM Missense_Mutation p.E289K 0.07 deleterious(0) unknown(0) TCGA-S9-A7R1-01 8 9563758 9563758 C G TNKS Missense_Mutation p.L422V 0.04 tolerated(0.25) benign(0.074) TCGA-S9-A7R1-01 9 101608400 101608400 C T GALNT12 Nonsense_Mutation p.Q534* 0.12 TCGA-S9-A7R1-01 X 23398114 23398114 C T PTCHD1 Missense_Mutation p.T253M 0.06 deleterious(0) benign(0.387) TCGA-S9-A7R1-01 X 48053653 48053653 C T SSX5 Silent p.K105K 0.08 TCGA-S9-A7R2-01 11 55433374 55433374 G T OR4C6 Silent p.V244V 0.25 TCGA-S9-A7R2-01 12 112499080 112499080 G A NAA25 Missense_Mutation p.T421M 0.16 tolerated(0.13) benign(0.034) TCGA-S9-A7R2-01 12 53045508 53045508 C T KRT2 Missense_Mutation p.G140D 0.31 tolerated(0.11) unknown(0) TCGA-S9-A7R2-01 12 58135803 58135803 G A AGAP2 5'Flank 0.78 TCGA-S9-A7R2-01 14 20502322 20502322 A G OR4K13 Missense_Mutation p.V199A 0.06 deleterious(0) probably_damaging(0.947) TCGA-S9-A7R2-01 14 36147303 36147303 C A RALGAPA1 Nonsense_Mutation p.E987* 0.36 TCGA-S9-A7R2-01 14 72055540 72055540 A G SIPA1L1 Silent p.R317R 0.24 TCGA-S9-A7R2-01 15 43990947 43990947 C T CKMT1A Nonsense_Mutation p.R374* 0.21 TCGA-S9-A7R2-01 15 52532038 52532038 G A MYO5C Silent p.Y865Y 0.30 TCGA-S9-A7R2-01 16 3085531 3085531 C T CCDC64B Intron 0.13 TCGA-S9-A7R2-01 16 80646694 80646694 G A CDYL2 Silent p.I349I 0.20 TCGA-S9-A7R2-01 17 39673194 39673194 G A KRT15 Missense_Mutation p.R202C 0.22 deleterious(0.02) probably_damaging(0.982) TCGA-S9-A7R2-01 17 6913672 6913672 G A ALOX12 Missense_Mutation p.R641Q 0.12 tolerated(0.09) possibly_damaging(0.704) TCGA-S9-A7R2-01 17 72541027 72541027 C T CD300C Missense_Mutation p.V41M 0.23 deleterious(0.03) probably_damaging(0.992) TCGA-S9-A7R2-01 18 14791432 14791432 G C ANKRD30B Silent p.V589V 0.20 TCGA-S9-A7R2-01 19 52954812 52954812 C T ZNF578 5'Flank 0.24 TCGA-S9-A7R2-01 1 12979942 12979942 C A PRAMEF7 Silent p.L378L 0.12 TCGA-S9-A7R2-01 1 152281967 152281967 C A FLG Missense_Mutation p.D1799Y 0.12 possibly_damaging(0.861) TCGA-S9-A7R2-01 1 214556732 214556732 T A PTPN14 Missense_Mutation p.K822N 0.13 deleterious(0.03) possibly_damaging(0.848) TCGA-S9-A7R2-01 1 53571401 53571401 C A SLC1A7 Intron 0.21 TCGA-S9-A7R2-01 1 70488940 70488940 G T LRRC7 Missense_Mutation p.Q521H 0.23 tolerated_low_confidence(0.31) benign(0.258) TCGA-S9-A7R2-01 20 17602584 17602584 C T RRBP1 Silent p.S619S 0.07 TCGA-S9-A7R2-01 21 43161239 43161239 G A RIPK4 Missense_Mutation p.T705M 0.06 deleterious(0.02) probably_damaging(1) TCGA-S9-A7R2-01 22 30688392 30688392 G C TBC1D10A Missense_Mutation p.S507C 0.28 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-S9-A7R2-01 2 33412100 33412100 C G LTBP1 Nonsense_Mutation p.S460* 0.18 TCGA-S9-A7R2-01 3 120123741 120123741 A G FSTL1 Silent p.N180N 0.23 TCGA-S9-A7R2-01 3 37032873 37032873 G A EPM2AIP1 Nonsense_Mutation p.R566* 0.27 TCGA-S9-A7R2-01 4 123151111 123151111 G A KIAA1109 Missense_Mutation p.C1023Y 0.19 probably_damaging(0.996) TCGA-S9-A7R2-01 4 184367380 184367380 G A CDKN2AIP Silent p.S181S 0.06 TCGA-S9-A7R2-01 4 70460268 70460268 C A UGT2A1 Missense_Mutation p.V577L 0.14 tolerated(0.05) possibly_damaging(0.551) TCGA-S9-A7R2-01 4 71114860 71114860 G A CSN3 Missense_Mutation p.R78H 0.26 tolerated(0.45) possibly_damaging(0.812) TCGA-S9-A7R2-01 5 49723994 49723994 A T EMB Missense_Mutation p.H60Q 0.15 tolerated(0.11) benign(0.037) TCGA-S9-A7R2-01 5 5463794 5463794 T A KIAA0947 Silent p.P1449P 0.10 TCGA-S9-A7R2-01 6 131211436 131211436 C G EPB41L2 Missense_Mutation p.G553A 0.15 deleterious(0) probably_damaging(0.996) TCGA-S9-A7R2-01 6 131211445 131211445 C T EPB41L2 Missense_Mutation p.S550N 0.17 deleterious(0.05) benign(0.312) TCGA-S9-A7R2-01 6 131211508 131211508 C G EPB41L2 Missense_Mutation p.S529T 0.19 deleterious(0) probably_damaging(0.983) TCGA-S9-A7R2-01 6 167704975 167704975 A G UNC93A 5'UTR 0.21 TCGA-S9-A7R2-01 6 32089121 32089121 G C ATF6B Silent p.V161V 0.32 TCGA-S9-A7R2-01 6 37605120 37605120 G - MDGA1 3'UTR 0.14 TCGA-S9-A7R2-01 6 52101833 52101833 C T IL17F Missense_Mutation p.V130I 0.15 deleterious(0) benign(0.001) TCGA-S9-A7R2-01 6 55406633 55406633 A G HMGCLL1 Missense_Mutation p.V94A 0.22 tolerated(0.75) benign(0.012) TCGA-S9-A7R2-01 7 100349693 100349693 C T ZAN Silent p.T655T 0.17 TCGA-S9-A7R2-01 7 128317737 128317737 T C FAM71F2 Missense_Mutation p.I162T 0.06 tolerated(0.93) benign(0.002) TCGA-S9-A7R2-01 7 21948089 21948089 A C CDCA7L Missense_Mutation p.S114A 0.10 tolerated(0.38) benign(0.002) TCGA-S9-A7R2-01 7 43591856 43591856 C T HECW1 Silent p.A1477A 0.14 TCGA-S9-A7R2-01 7 55210075 55210075 T G EGFR Missense_Mutation p.L62R 0.24 deleterious(0.01) probably_damaging(0.962) TCGA-S9-A7R2-01 7 57187854 57187854 G T ZNF479 Missense_Mutation p.T423N 0.15 tolerated(0.66) benign(0.001) TCGA-S9-A7R2-01 7 57194409 57194409 C G ZNF479 Missense_Mutation p.R19T 0.13 deleterious(0.04) probably_damaging(0.998) TCGA-S9-A7R2-01 8 100990160 100990160 G A RGS22 Silent p.D1168D 0.29 TCGA-S9-A7R2-01 8 17823519 17823519 A G PCM1 Missense_Mutation p.N956S 0.16 tolerated(0.83) benign(0.006) TCGA-S9-A7R2-01 8 39645770 39645770 T C ADAM2 Missense_Mutation p.I215V 0.22 tolerated(0.21) benign(0.02) TCGA-S9-A7R2-01 8 70964195 70964195 G C PRDM14 3'UTR 0.50 TCGA-S9-A7R2-01 9 140040319 140040319 C T GRIN1 Missense_Mutation p.R179C 0.40 deleterious(0) probably_damaging(0.913) TCGA-S9-A7R2-01 9 39888070 39888070 C T SPATA31A2 Nonsense_Mutation p.R353* 0.22 TCGA-S9-A7R2-01 X 117739300 117739300 G A DOCK11 Missense_Mutation p.V888I 0.54 tolerated(0.44) benign(0.01) TCGA-S9-A7R2-01 X 27997088 27997088 T A DCAF8L1 3'UTR 0.09 TCGA-S9-A7R2-01 X 37029461 37029461 T C FAM47C Missense_Mutation p.M993T 0.38 deleterious(0.01) possibly_damaging(0.651) TCGA-S9-A7R3-01 10 105178345 105178345 A G PDCD11 Missense_Mutation p.D687G 0.44 deleterious(0) probably_damaging(1) TCGA-S9-A7R3-01 11 3680945 3680945 C T ART1 Missense_Mutation p.H66Y 0.22 deleterious(0.02) benign(0.005) TCGA-S9-A7R3-01 12 1137520 1137520 A G ERC1 Missense_Mutation p.I151V 0.04 tolerated(0.77) benign(0.094) TCGA-S9-A7R3-01 12 3692311 3692311 G A PRMT8 Missense_Mutation p.A306T 0.17 deleterious(0.02) benign(0.342) TCGA-S9-A7R3-01 12 48743880 48743880 C T ZNF641 5'UTR 0.32 TCGA-S9-A7R3-01 12 772646 772646 G T NINJ2 Missense_Mutation p.Q7K 0.13 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-S9-A7R3-01 13 60545138 60545138 G A DIAPH3 Missense_Mutation p.R603W 0.30 deleterious(0.03) benign(0.339) TCGA-S9-A7R3-01 17 61482567 61482567 G A TANC2 Missense_Mutation p.R1065H 0.12 deleterious(0.03) possibly_damaging(0.608) TCGA-S9-A7R3-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.84 deleterious(0) probably_damaging(0.998) TCGA-S9-A7R3-01 17 9503430 9503430 A C WDR16 Missense_Mutation p.D228A 0.42 deleterious(0) probably_damaging(1) TCGA-S9-A7R3-01 18 19997008 19997008 G A CTAGE1 Missense_Mutation p.T256M 0.06 tolerated(0.29) benign(0.08) TCGA-S9-A7R3-01 18 47367798 47367798 C T MYO5B Silent p.T1546T 0.35 TCGA-S9-A7R3-01 18 70205466 70205466 A T CBLN2 Missense_Mutation p.L207H 0.46 deleterious(0) probably_damaging(0.997) TCGA-S9-A7R3-01 19 10224393 10224395 TGG - P2RY11 In_Frame_Del p.V37del 0.21 TCGA-S9-A7R3-01 19 42930686 42930686 A G LIPE Missense_Mutation p.F206L 0.43 deleterious_low_confidence(0.04) benign(0.07) TCGA-S9-A7R3-01 1 227152916 227152916 C T ADCK3 Silent p.P131P 0.37 TCGA-S9-A7R3-01 21 19190530 19190530 A - C21orf91 Frame_Shift_Del p.C36Vfs*4 0.25 TCGA-S9-A7R3-01 22 17073284 17073284 G A CCT8L2 Missense_Mutation p.P53S 0.43 deleterious(0) probably_damaging(1) TCGA-S9-A7R3-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7R3-01 2 85570272 85570272 C T RETSAT 3'UTR 0.18 TCGA-S9-A7R3-01 3 38748793 38748793 G T SCN10A Missense_Mutation p.Q1455K 0.21 deleterious(0) probably_damaging(0.968) TCGA-S9-A7R3-01 4 115898356 115898356 C G NDST4 Missense_Mutation p.K351N 0.36 deleterious(0) possibly_damaging(0.908) TCGA-S9-A7R3-01 4 155508066 155508066 T C FGA Missense_Mutation p.D172G 0.32 deleterious(0) probably_damaging(0.955) TCGA-S9-A7R3-01 5 72383519 72383519 A G FCHO2 Silent p.V783V 0.26 TCGA-S9-A7R3-01 5 74077251 74077253 AAG - FAM169A 3'UTR 0.31 TCGA-S9-A7R3-01 6 117861894 117861894 G A DCBLD1 Missense_Mutation p.A389T 0.23 deleterious(0) possibly_damaging(0.682) TCGA-S9-A7R3-01 8 27667761 27667764 TATG - PBK 3'UTR 0.39 TCGA-S9-A7R3-01 9 100190781 100190781 C T TDRD7 Nonsense_Mutation p.R12* 0.35 TCGA-S9-A7R3-01 9 104152867 104152867 T C MRPL50 Missense_Mutation p.M120V 0.31 tolerated(0.07) benign(0.393) TCGA-S9-A7R3-01 9 21166307 21166307 T C IFNA21 Missense_Mutation p.Q102R 0.20 tolerated(0.15) benign(0.016) TCGA-S9-A7R3-01 X 106459933 106459933 T C PIH1D3 Silent p.G62G 0.25 TCGA-S9-A7R3-01 X 129370584 129370584 G A ZNF280C Missense_Mutation p.H175Y 0.39 tolerated(0.06) benign(0.005) TCGA-S9-A7R3-01 X 153236222 153236222 C A HCFC1 Missense_Mutation p.G24C 0.34 deleterious(0) probably_damaging(0.998) TCGA-S9-A7R3-01 X 153282062 153282062 G A IRAK1 Silent p.P354P 0.34 TCGA-S9-A7R4-01 10 27702370 27702370 G A PTCHD3 Silent p.Y270Y 0.10 TCGA-S9-A7R4-01 10 95191198 95191198 G T MYOF Silent p.I104I 0.41 TCGA-S9-A7R4-01 11 3700842 3700842 G C NUP98 Missense_Mutation p.S1672C 0.33 deleterious(0.01) possibly_damaging(0.896) TCGA-S9-A7R4-01 11 60059749 60059749 A G MS4A4A Silent p.P31P 0.12 TCGA-S9-A7R4-01 11 64571946 64571946 G A MEN1 Silent p.L570L 0.12 TCGA-S9-A7R4-01 11 6470639 6470639 C G TRIM3 Missense_Mutation p.G660A 0.09 deleterious(0) probably_damaging(0.999) TCGA-S9-A7R4-01 11 8115663 8115663 G C TUB Missense_Mutation p.K163N 0.30 tolerated(0.15) possibly_damaging(0.647) TCGA-S9-A7R4-01 11 8117074 8117074 G C TUB Missense_Mutation p.D198H 0.69 deleterious(0) possibly_damaging(0.859) TCGA-S9-A7R4-01 11 8161430 8161430 A G RIC3 Intron 0.20 TCGA-S9-A7R4-01 13 39918104 39918104 G A LHFP Missense_Mutation p.S191L 0.45 deleterious(0) benign(0.097) TCGA-S9-A7R4-01 15 72324886 72324886 C T MYO9A Missense_Mutation p.R295H 0.35 deleterious(0.02) probably_damaging(0.986) TCGA-S9-A7R4-01 16 16276377 16276377 G A ABCC6 Silent p.F713F 0.40 TCGA-S9-A7R4-01 16 28606753 28606753 G A SULT1A2 Nonsense_Mutation p.R103* 0.09 TCGA-S9-A7R4-01 17 7579312 7579312 C T TP53 Silent p.T125T 0.68 TCGA-S9-A7R4-01 18 61654614 61654614 A - SERPINB8 3'UTR 0.47 TCGA-S9-A7R4-01 19 11123706 11123706 A G SMARCA4 Missense_Mutation p.T786A 0.12 probably_damaging(0.965) TCGA-S9-A7R4-01 19 14991465 14991465 A T OR7A17 Missense_Mutation p.Y235N 0.10 deleterious_low_confidence(0.01) benign(0.182) TCGA-S9-A7R4-01 19 33183494 33183494 C G NUDT19 Missense_Mutation p.R210G 0.12 tolerated(0.06) probably_damaging(0.947) TCGA-S9-A7R4-01 19 45430262 45430262 G A APOC1P1 RNA 0.21 TCGA-S9-A7R4-01 1 159277544 159277544 G A FCER1A Missense_Mutation p.R199H 0.16 tolerated(0.13) benign(0) TCGA-S9-A7R4-01 1 45477875 45477876 - G UROD 5'UTR 0.32 TCGA-S9-A7R4-01 20 16352371 16352371 C T KIF16B Missense_Mutation p.R1129H 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-S9-A7R4-01 21 34029205 34029205 C T SYNJ1 Missense_Mutation p.V902I 0.11 tolerated(0.35) benign(0.028) TCGA-S9-A7R4-01 21 38997768 38997768 C T KCNJ6 Missense_Mutation p.R322Q 0.42 deleterious(0.01) possibly_damaging(0.621) TCGA-S9-A7R4-01 22 51044141 51044141 G A MAPK8IP2 Missense_Mutation p.G664S 0.11 tolerated(0.2) possibly_damaging(0.841) TCGA-S9-A7R4-01 2 172604313 172604313 T C DYNC1I2 Missense_Mutation p.W611R 0.24 deleterious(0) probably_damaging(0.923) TCGA-S9-A7R4-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7R4-01 2 222294846 222294846 T C EPHA4 Missense_Mutation p.Y841C 0.13 deleterious(0) probably_damaging(0.997) TCGA-S9-A7R4-01 2 97403691 97403691 G A LMAN2L Missense_Mutation p.R101W 0.08 deleterious(0.03) probably_damaging(1) TCGA-S9-A7R4-01 5 50683336 50683336 C A ISL1 Silent p.I77I 0.48 TCGA-S9-A7R4-01 6 51890079 51890079 G A PKHD1 Missense_Mutation p.A1510V 0.39 deleterious(0.05) possibly_damaging(0.485) TCGA-S9-A7R4-01 7 57528588 57528588 G T ZNF716 Missense_Mutation p.G141C 0.33 tolerated(0.19) probably_damaging(0.983) TCGA-S9-A7R4-01 8 94746794 94746794 C G RBM12B Missense_Mutation p.R615S 0.11 tolerated_low_confidence(0.1) possibly_damaging(0.468) TCGA-S9-A7R4-01 X 73046569 73046569 A T XIST RNA 0.08 TCGA-S9-A7R7-01 11 51515455 51515455 C A OR4C46 Nonsense_Mutation p.Y58* 0.28 TCGA-S9-A7R7-01 11 75298872 75298872 A T MAP6 Silent p.S558S 0.31 TCGA-S9-A7R7-01 12 22440124 22440129 AGTATA - ST8SIA1 In_Frame_Del p.L112_Y113del 0.28 TCGA-S9-A7R7-01 12 49494380 49494380 G A LMBR1L Missense_Mutation p.R378W 0.08 deleterious(0.04) benign(0) TCGA-S9-A7R7-01 14 75538368 75538368 C T ZC2HC1C Silent p.S364S 0.24 TCGA-S9-A7R7-01 15 28326921 28326921 C T OCA2 Missense_Mutation p.G34S 0.32 tolerated_low_confidence(0.68) benign(0) TCGA-S9-A7R7-01 17 5048779 5048779 G A USP6 Missense_Mutation p.C691Y 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-S9-A7R7-01 17 66933164 66933164 T C ABCA8 Missense_Mutation p.T132A 0.21 tolerated(0.16) benign(0.074) TCGA-S9-A7R7-01 17 7577105 7577105 G - TP53 Frame_Shift_Del p.P278Lfs*67 0.17 TCGA-S9-A7R7-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.33 deleterious(0) probably_damaging(1) TCGA-S9-A7R7-01 18 12724673 12724673 G A PSMG2 Intron 0.28 TCGA-S9-A7R7-01 1 158815468 158815468 C T MNDA Missense_Mutation p.A221V 0.27 deleterious(0.02) benign(0.429) TCGA-S9-A7R7-01 1 89729445 89729445 A G GBP5 Missense_Mutation p.Y446H 0.29 tolerated(0.52) benign(0.014) TCGA-S9-A7R7-01 20 30610578 30610578 G A CCM2L Missense_Mutation p.R350Q 0.37 deleterious(0.01) probably_damaging(0.965) TCGA-S9-A7R7-01 20 62830225 62830225 A - MYT1 Frame_Shift_Del p.N5Mfs*75 0.25 TCGA-S9-A7R7-01 22 18844780 18844780 G A BCRP7 Intron 0.23 TCGA-S9-A7R7-01 2 197761856 197761856 T C PGAP1 Missense_Mutation p.Q309R 0.26 deleterious(0) probably_damaging(0.999) TCGA-S9-A7R7-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7R7-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.28 tolerated(0.11) possibly_damaging(0.529) TCGA-S9-A7R7-01 3 31725336 31725336 G - OSBPL10 Frame_Shift_Del p.R506Afs*21 0.27 TCGA-S9-A7R7-01 3 49899247 49899247 C T CAMKV Silent p.K93K 0.27 TCGA-S9-A7R7-01 5 70922478 70922478 C T MCCC2 Silent p.V212V 0.08 TCGA-S9-A7R7-01 6 144820553 144820553 C T UTRN Missense_Mutation p.S1585F 0.30 deleterious(0) possibly_damaging(0.857) TCGA-S9-A7R7-01 6 35466203 35466203 C T TULP1 Silent p.A510A 0.17 TCGA-S9-A7R7-01 7 122763178 122763178 A T SLC13A1 Splice_Site p.X450_splice 0.30 TCGA-S9-A7R7-01 7 97834892 97834892 G A LMTK2 3'UTR 0.27 TCGA-S9-A7R7-01 9 132620353 132620353 G A USP20 Missense_Mutation p.G54R 0.36 deleterious(0) probably_damaging(1) TCGA-S9-A7R7-01 X 39932980 39932981 - G BCOR Frame_Shift_Ins p.R540Pfs*17 0.36 TCGA-S9-A7R7-01 X 76940000 76940000 G A ATRX Nonsense_Mutation p.R250* 0.51 TCGA-S9-A7R8-01 10 124671156 124671156 A G FAM24A Silent p.A2A 0.42 TCGA-S9-A7R8-01 10 95276727 95276727 G A CEP55 Missense_Mutation p.D239N 0.27 tolerated(0.08) benign(0) TCGA-S9-A7R8-01 11 113661308 113661308 A G ATF4P4 RNA 0.53 TCGA-S9-A7R8-01 11 6261635 6261635 C T CNGA4 Missense_Mutation p.P204L 0.08 deleterious(0) probably_damaging(1) TCGA-S9-A7R8-01 11 6976991 6976991 C G ZNF215 Missense_Mutation p.H261Q 0.50 tolerated(0.16) benign(0.001) TCGA-S9-A7R8-01 12 109998861 109998861 G A MMAB Missense_Mutation p.R190C 0.20 deleterious(0) probably_damaging(0.999) TCGA-S9-A7R8-01 14 24785430 24785430 G T LTB4R Silent p.L191L 0.64 TCGA-S9-A7R8-01 15 64381046 64381046 C G FAM96A Missense_Mutation p.L43F 0.48 tolerated(0.09) possibly_damaging(0.538) TCGA-S9-A7R8-01 16 18554945 18554945 A C NOMO2 Silent p.T243T 0.35 TCGA-S9-A7R8-01 16 2087555 2087555 C T SLC9A3R2 Missense_Mutation p.A270V 0.11 tolerated(0.23) benign(0.001) TCGA-S9-A7R8-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.91 deleterious(0) probably_damaging(0.997) TCGA-S9-A7R8-01 17 76491163 76491163 C T DNAH17 Missense_Mutation p.V1960I 0.33 possibly_damaging(0.749) TCGA-S9-A7R8-01 19 17954587 17954587 G A JAK3 Missense_Mutation p.R103C 0.31 deleterious(0) probably_damaging(1) TCGA-S9-A7R8-01 19 35941457 35941457 C T FFAR2 Missense_Mutation p.R281C 0.72 deleterious(0) probably_damaging(1) TCGA-S9-A7R8-01 19 48248981 48248981 G A GLTSCR2 Silent p.P55P 0.21 TCGA-S9-A7R8-01 19 56552352 56552352 C T NLRP5 Missense_Mutation p.R951W 0.73 tolerated(0.06) possibly_damaging(0.613) TCGA-S9-A7R8-01 19 6677968 6677968 G A C3 Silent p.D1639D 0.39 TCGA-S9-A7R8-01 1 158517240 158517240 A G OR6Y1 Missense_Mutation p.V219A 0.32 tolerated(0.13) probably_damaging(0.999) TCGA-S9-A7R8-01 1 159922090 159922090 A G SLAMF9 Missense_Mutation p.V209A 0.41 tolerated(0.21) benign(0.004) TCGA-S9-A7R8-01 1 178427190 178427190 G A RASAL2 Silent p.S921S 0.16 TCGA-S9-A7R8-01 1 35260819 35260819 G C GJA4 3'UTR 0.38 TCGA-S9-A7R8-01 20 35672586 35672586 A G RBL1 Missense_Mutation p.I558T 0.32 deleterious(0) possibly_damaging(0.788) TCGA-S9-A7R8-01 20 5905691 5905691 G A CHGB Missense_Mutation p.G677D 0.47 deleterious(0) probably_damaging(1) TCGA-S9-A7R8-01 2 158115046 158115046 C A GALNT5 Missense_Mutation p.P151H 0.25 tolerated(0.44) benign(0.004) TCGA-S9-A7R8-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A7R8-01 2 25141329 25141329 G A ADCY3 Silent p.V176V 0.54 TCGA-S9-A7R8-01 3 53264614 53264614 C T TKT Silent p.G330G 0.34 TCGA-S9-A7R8-01 5 113698614 113698614 T C KCNN2 Missense_Mutation p.S48P 0.16 tolerated_low_confidence(0.32) benign(0.307) TCGA-S9-A7R8-01 5 140306346 140306346 T C PCDHAC1 5'Flank 0.50 TCGA-S9-A7R8-01 6 136596694 136596694 C A BCLAF1 Missense_Mutation p.V610L 0.11 deleterious(0) benign(0.198) TCGA-S9-A7R8-01 7 65705883 65705883 T A TPST1 Nonsense_Mutation p.C157* 0.55 TCGA-S9-A7R8-01 7 83823801 83823801 T G SEMA3A Missense_Mutation p.L34F 0.45 tolerated(0.05) benign(0.014) TCGA-S9-A7R8-01 7 90895601 90895601 A G FZD1 Missense_Mutation p.D469G 0.38 deleterious(0) probably_damaging(0.967) TCGA-S9-A7R8-01 8 144802971 144802971 T G MAPK15 Nonsense_Mutation p.L293* 0.39 TCGA-S9-A7R8-01 8 29043864 29043864 C T KIF13B Missense_Mutation p.V148M 0.05 deleterious(0) probably_damaging(0.994) TCGA-S9-A7R8-01 9 71861646 71861646 C T TJP2 Silent p.G900G 0.03 TCGA-S9-A7R8-01 9 85605368 85605368 T G RASEF Missense_Mutation p.L685F 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-S9-A7R8-01 X 125298550 125298550 C T DCAF12L2 Missense_Mutation p.G453D 0.44 deleterious(0.04) benign(0.019) TCGA-S9-A7R8-01 X 1407750 1407750 G A CSF2RA Missense_Mutation p.V148I 0.48 tolerated(0.11) possibly_damaging(0.733) TCGA-S9-A7R8-01 X 48688182 48688182 G A ERAS Missense_Mutation p.E217K 0.41 tolerated(0.77) benign(0) TCGA-S9-A7R8-01 X 70321220 70321220 C T FOXO4 Silent p.D380D 0.13 TCGA-S9-A7R8-01 X 76938331 76938331 T - ATRX Frame_Shift_Del p.K806Rfs*16 0.33 TCGA-S9-A7R8-01 X 76938344 76938344 T C ATRX Missense_Mutation p.I802V 0.50 benign(0) TCGA-S9-A89V-01 10 119017386 119017386 C T SLC18A2 Missense_Mutation p.S325F 0.27 deleterious(0.01) benign(0.008) TCGA-S9-A89V-01 11 100912815 100912815 C T PGR Missense_Mutation p.R836Q 0.05 deleterious(0.01) benign(0.105) TCGA-S9-A89V-01 11 123901018 123901018 C T OR10G8 Missense_Mutation p.S230L 0.13 deleterious(0.01) possibly_damaging(0.672) TCGA-S9-A89V-01 11 18231801 18231801 G A RP11-113D6.10 3'UTR 0.30 TCGA-S9-A89V-01 12 46245237 46245238 - T ARID2 Frame_Shift_Ins p.Q1112Afs*48 0.20 TCGA-S9-A89V-01 13 36748670 36748670 C G SOHLH2 Missense_Mutation p.C352S 0.15 tolerated(0.23) benign(0.084) TCGA-S9-A89V-01 13 99337171 99337171 T C SLC15A1 Splice_Site p.X646_splice 0.35 TCGA-S9-A89V-01 15 42019568 42019568 A G MGA Silent p.K1207K 0.19 TCGA-S9-A89V-01 15 43045134 43045138 AAATT - TTBK2 Frame_Shift_Del p.E769Gfs*8 0.10 TCGA-S9-A89V-01 16 81183425 81183425 G A PKD1L2 RNA 0.20 TCGA-S9-A89V-01 17 10404747 10404747 G A MYH1 Missense_Mutation p.R1140C 0.17 deleterious(0.03) probably_damaging(1) TCGA-S9-A89V-01 17 19284565 19284565 C G MAPK7 Missense_Mutation p.A348G 0.08 deleterious(0.01) unknown(0) TCGA-S9-A89V-01 17 27085549 27085549 G A FAM222B Silent p.H476H 0.22 TCGA-S9-A89V-01 17 29527526 29527527 - A NF1 Frame_Shift_Ins p.L327Tfs*3 0.15 TCGA-S9-A89V-01 17 29665041 29665041 A T NF1 Splice_Site p.X2235_splice 0.31 TCGA-S9-A89V-01 17 38905574 38905574 G T KRT25 Silent p.A393A 0.09 TCGA-S9-A89V-01 17 8136303 8136303 T C CTC1 Silent p.Q622Q 0.11 TCGA-S9-A89V-01 18 29645962 29645962 A C RNF125 Missense_Mutation p.D201A 0.13 deleterious(0.01) benign(0.293) TCGA-S9-A89V-01 18 61449741 61449741 C T SERPINB7 Silent p.G45G 0.27 TCGA-S9-A89V-01 19 18968242 18968242 G A UPF1 Silent p.R694R 0.31 TCGA-S9-A89V-01 19 55281318 55281318 G A KIR2DL1 Missense_Mutation p.V6I 0.19 tolerated_low_confidence(0.43) benign(0.002) TCGA-S9-A89V-01 19 7593548 7593548 C T MCOLN1 Missense_Mutation p.L315F 0.08 deleterious(0) probably_damaging(0.987) TCGA-S9-A89V-01 19 9204135 9204135 G C OR1M1 Missense_Mutation p.C72S 0.18 tolerated(0.08) benign(0.219) TCGA-S9-A89V-01 19 9413161 9413161 T A ZNF699 Missense_Mutation p.D23V 0.08 deleterious(0) possibly_damaging(0.642) TCGA-S9-A89V-01 1 179354494 179354494 G A AXDND1 Missense_Mutation p.R288K 0.26 deleterious(0.01) possibly_damaging(0.694) TCGA-S9-A89V-01 1 186105941 186105941 G A HMCN1 Missense_Mutation p.R4485Q 0.19 probably_damaging(0.993) TCGA-S9-A89V-01 1 198492549 198492549 A G ATP6V1G3 Missense_Mutation p.I110T 0.16 deleterious(0.04) benign(0.007) TCGA-S9-A89V-01 1 208390260 208390260 A - PLXNA2 Frame_Shift_Del p.F336Lfs*87 0.10 TCGA-S9-A89V-01 1 227920211 227920211 A G JMJD4 Missense_Mutation p.L425P 0.17 deleterious(0) probably_damaging(0.984) TCGA-S9-A89V-01 20 37601286 37601286 A G DHX35 Missense_Mutation p.I87V 0.12 tolerated(0.28) benign(0.006) TCGA-S9-A89V-01 20 50701500 50701500 C T ZFP64 Missense_Mutation p.V512M 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-S9-A89V-01 21 31045398 31045398 C A GRIK1 Missense_Mutation p.D211Y 0.12 deleterious(0.03) probably_damaging(0.974) TCGA-S9-A89V-01 21 43547321 43547321 G A UMODL1 Missense_Mutation p.D1295N 0.38 deleterious(0) probably_damaging(0.998) TCGA-S9-A89V-01 2 135744237 135744237 C T MAP3K19 Silent p.E735E 0.10 TCGA-S9-A89V-01 2 159459581 159459581 G A PKP4 Splice_Site p.X82_splice 0.06 TCGA-S9-A89V-01 2 160901539 160901539 C T PLA2R1 Missense_Mutation p.G80D 0.29 deleterious(0.01) benign(0.098) TCGA-S9-A89V-01 2 170093622 170093622 G A LRP2 Missense_Mutation p.P1561L 0.12 probably_damaging(1) TCGA-S9-A89V-01 2 218999635 218999635 C T CXCR2 Silent p.A37A 0.19 TCGA-S9-A89V-01 2 25464457 25464457 C A DNMT3A Missense_Mutation p.D686Y 0.29 deleterious(0) probably_damaging(1) TCGA-S9-A89V-01 4 69344613 69344613 C T TMPRSS11E Silent p.D338D 0.13 TCGA-S9-A89V-01 5 137259133 137259133 G T PKD2L2 Missense_Mutation p.D492Y 0.10 deleterious(0.01) benign(0.162) TCGA-S9-A89V-01 5 148699992 148699992 G A AFAP1L1 Missense_Mutation p.R555Q 0.09 tolerated(0.05) benign(0.27) TCGA-S9-A89V-01 5 162909742 162909742 G A HMMR Missense_Mutation p.D494N 0.26 tolerated(0.14) probably_damaging(0.928) TCGA-S9-A89V-01 5 169028287 169028287 C T SPDL1 Missense_Mutation p.T443I 0.33 tolerated(0.27) benign(0.001) TCGA-S9-A89V-01 5 180038363 180038363 C T FLT4 Silent p.P1218P 0.12 TCGA-S9-A89V-01 6 109286254 109286254 G A ARMC2 Nonsense_Mutation p.W786* 0.09 TCGA-S9-A89V-01 6 10956459 10956459 G T SYCP2L Missense_Mutation p.R716L 0.20 tolerated(1) benign(0) TCGA-S9-A89V-01 6 131574228 131574228 T C AKAP7 Intron 0.31 TCGA-S9-A89V-01 6 150387184 150387184 C T ULBP3 Missense_Mutation p.G68D 0.20 tolerated(0.05) possibly_damaging(0.667) TCGA-S9-A89V-01 7 140111797 140111797 C T RAB19 Missense_Mutation p.P109S 0.14 tolerated(0.11) benign(0.285) TCGA-S9-A89V-01 8 133142022 133142022 C T KCNQ3 Silent p.V702V 0.21 TCGA-S9-A89V-01 9 107367757 107367757 A G OR13C2 Missense_Mutation p.L51S 0.11 deleterious(0.05) benign(0.432) TCGA-S9-A89V-01 X 150912517 150912517 G A CNGA2 Silent p.S514S 0.32 TCGA-S9-A89V-01 X 54823433 54823433 G T ITIH6 Missense_Mutation p.H67N 0.07 tolerated(0.07) probably_damaging(0.937) TCGA-S9-A89V-01 X 76920157 76920157 T - ATRX Frame_Shift_Del p.N1307Mfs*39 0.32 TCGA-S9-A89V-01 Y 24050330 24050330 C T RBMY1E Missense_Mutation p.G402S 0.13 tolerated(0.94) benign(0.01) TCGA-S9-A89Z-01 10 104934622 104934622 A T NT5C2 Missense_Mutation p.Y32N 0.26 tolerated(0.31) benign(0.001) TCGA-S9-A89Z-01 10 37431045 37431045 C T ANKRD30A Missense_Mutation p.T351M 0.44 tolerated(0.07) benign(0.277) TCGA-S9-A89Z-01 10 88418319 88418319 G A OPN4 Missense_Mutation p.R179H 0.35 deleterious(0) probably_damaging(0.999) TCGA-S9-A89Z-01 11 117310638 117310638 T C DSCAML1 Missense_Mutation p.I1353V 0.05 tolerated(0.2) benign(0.037) TCGA-S9-A89Z-01 11 125497608 125497608 A G CHEK1 Missense_Mutation p.I58V 0.38 tolerated(0.18) benign(0.357) TCGA-S9-A89Z-01 11 55322062 55322062 A G OR4C15 Missense_Mutation p.N94D 0.08 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-S9-A89Z-01 11 92714787 92714787 C T MTNR1B Missense_Mutation p.A133V 0.32 deleterious(0.03) possibly_damaging(0.461) TCGA-S9-A89Z-01 12 124288309 124288309 A G DNAH10 Missense_Mutation p.T788A 0.23 benign(0.001) TCGA-S9-A89Z-01 12 21713428 21713428 T C GYS2 Splice_Site p.X355_splice 0.40 TCGA-S9-A89Z-01 13 28636085 28636085 T C FLT3 Missense_Mutation p.D96G 0.14 tolerated(0.14) benign(0.001) TCGA-S9-A89Z-01 14 102431051 102431051 G C DYNC1H1 Missense_Mutation p.G8A 0.20 unknown(0) TCGA-S9-A89Z-01 14 70990039 70990039 T C ADAM20 Missense_Mutation p.N529S 0.43 deleterious(0.05) possibly_damaging(0.779) TCGA-S9-A89Z-01 14 74876137 74876137 T A SYNDIG1L Missense_Mutation p.Q104L 0.37 tolerated(0.83) benign(0.01) TCGA-S9-A89Z-01 16 20476907 20476907 T G ACSM2A Missense_Mutation p.N82K 0.08 deleterious(0) probably_damaging(0.954) TCGA-S9-A89Z-01 16 20570701 20570701 A C ACSM2B Missense_Mutation p.N82K 0.45 deleterious(0) possibly_damaging(0.898) TCGA-S9-A89Z-01 16 20871683 20871683 A C DCUN1D3 Missense_Mutation p.F147C 0.38 deleterious(0) probably_damaging(0.998) TCGA-S9-A89Z-01 17 7577049 7577049 G - TP53 Frame_Shift_Del p.H297Tfs*48 0.27 TCGA-S9-A89Z-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.39 tolerated(0.13) possibly_damaging(0.631) TCGA-S9-A89Z-01 17 76497400 76497400 C T DNAH17 Nonsense_Mutation p.W1769* 0.36 TCGA-S9-A89Z-01 17 9683322 9683322 G C DHRS7C Missense_Mutation p.L101V 0.24 deleterious(0.02) benign(0.257) TCGA-S9-A89Z-01 18 28986302 28986302 T A DSG4 Silent p.I633I 0.27 TCGA-S9-A89Z-01 19 15839146 15839146 C T OR10H2 Missense_Mutation p.A98V 0.23 tolerated(0.06) benign(0.018) TCGA-S9-A89Z-01 19 35556561 35556561 C T HPN Silent p.P342P 0.35 TCGA-S9-A89Z-01 19 41096689 41096689 G A SHKBP1 Missense_Mutation p.A608T 0.45 tolerated(0.13) benign(0.002) TCGA-S9-A89Z-01 19 55716930 55716930 T C PTPRH Missense_Mutation p.E128G 0.35 unknown(0) TCGA-S9-A89Z-01 19 9088171 9088171 C A MUC16 Missense_Mutation p.S1215I 0.36 unknown(0) TCGA-S9-A89Z-01 1 152275641 152275641 G A FLG Silent p.R3907R 0.05 TCGA-S9-A89Z-01 1 153004933 153004933 A G SPRR1B Missense_Mutation p.K38E 0.06 tolerated(0.09) benign(0.278) TCGA-S9-A89Z-01 1 185959534 185959534 T C HMCN1 Silent p.T1112T 0.48 TCGA-S9-A89Z-01 1 186014861 186014861 C T HMCN1 Missense_Mutation p.L2116F 0.28 possibly_damaging(0.745) TCGA-S9-A89Z-01 1 206809489 206809489 C T DYRK3 Intron 0.39 TCGA-S9-A89Z-01 1 247752061 247752061 C A OR2G2 Missense_Mutation p.H134N 0.19 deleterious(0.01) benign(0.174) TCGA-S9-A89Z-01 1 247752350 247752350 G T OR2G2 Missense_Mutation p.R230M 0.61 deleterious(0.03) benign(0.213) TCGA-S9-A89Z-01 1 60314160 60314160 G A HOOK1 Missense_Mutation p.R368H 0.07 deleterious(0) probably_damaging(1) TCGA-S9-A89Z-01 20 43052756 43052756 C T HNF4A Missense_Mutation p.R331C 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-S9-A89Z-01 2 17696859 17696859 A T RAD51AP2 Missense_Mutation p.C942S 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-S9-A89Z-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-S9-A89Z-01 2 209358134 209358135 - CACA PTH2R Frame_Shift_Ins p.R470Hfs*19 0.29 TCGA-S9-A89Z-01 2 61622338 61622338 C T USP34 Missense_Mutation p.G195R 0.20 deleterious(0.01) possibly_damaging(0.844) TCGA-S9-A89Z-01 3 108776215 108776215 C T MORC1 Missense_Mutation p.G384S 0.42 deleterious(0) probably_damaging(1) TCGA-S9-A89Z-01 3 123366171 123366171 G A MYLK Missense_Mutation p.R1507W 0.07 deleterious(0) possibly_damaging(0.799) TCGA-S9-A89Z-01 3 14709604 14709604 G T CCDC174 Missense_Mutation p.A290S 0.35 deleterious(0.02) probably_damaging(0.918) TCGA-S9-A89Z-01 4 126411235 126411235 T C FAT4 Missense_Mutation p.Y4420H 0.33 benign(0.006) TCGA-S9-A89Z-01 4 155505789 155505789 G A FGA Silent p.F696F 0.29 TCGA-S9-A89Z-01 4 169145434 169145434 T C DDX60 Missense_Mutation p.N1595S 0.29 tolerated(0.41) benign(0.049) TCGA-S9-A89Z-01 4 186380117 186380117 C T CCDC110 Missense_Mutation p.A542T 0.20 tolerated(1) benign(0.003) TCGA-S9-A89Z-01 4 70455139 70455139 A T UGT2A1 Missense_Mutation p.F678Y 0.31 deleterious(0.03) benign(0.176) TCGA-S9-A89Z-01 4 71347515 71347515 G T MUC7 Missense_Mutation p.G352C 0.36 tolerated_low_confidence(0.06) unknown(0) TCGA-S9-A89Z-01 5 1268645 1268645 G A TERT Missense_Mutation p.R858W 0.34 deleterious(0) possibly_damaging(0.892) TCGA-S9-A89Z-01 5 131879049 131879049 C T IL5 Missense_Mutation p.R41Q 0.35 tolerated(0.44) benign(0.002) TCGA-S9-A89Z-01 5 13758953 13758953 A T DNAH5 Splice_Site p.X3473_splice 0.43 TCGA-S9-A89Z-01 5 178152410 178152410 C A ZNF354A Missense_Mutation p.V75L 0.47 tolerated(0.29) benign(0.001) TCGA-S9-A89Z-01 5 19839062 19839062 C T CDH18 Missense_Mutation p.V12I 0.36 tolerated(0.34) benign(0.039) TCGA-S9-A89Z-01 5 54573002 54573002 C T DHX29 Missense_Mutation p.E740K 0.07 tolerated(0.12) benign(0.291) TCGA-S9-A89Z-01 5 64447724 64447724 A C ADAMTS6 Missense_Mutation p.F1098C 0.47 deleterious(0) probably_damaging(0.999) TCGA-S9-A89Z-01 5 66458525 66458525 A G MAST4 Silent p.S1292S 0.38 TCGA-S9-A89Z-01 6 143818531 143818531 T C FUCA2 Missense_Mutation p.T420A 0.44 deleterious(0.03) benign(0.019) TCGA-S9-A89Z-01 6 154412154 154412154 T A OPRM1 Nonsense_Mutation p.C330* 0.46 TCGA-S9-A89Z-01 6 27218459 27218459 T C PRSS16 Intron 0.29 TCGA-S9-A89Z-01 6 29364624 29364624 G T OR12D2 Missense_Mutation p.D50Y 0.37 deleterious(0) probably_damaging(0.96) TCGA-S9-A89Z-01 6 4069947 4069947 A G FAM217A Silent p.C170C 0.45 TCGA-S9-A89Z-01 6 47647822 47647822 G T GPR111 Missense_Mutation p.V163F 0.31 tolerated(0.31) benign(0.002) TCGA-S9-A89Z-01 7 100730605 100730605 C T TRIM56 Silent p.H4H 0.06 TCGA-S9-A89Z-01 7 158443658 158443658 A G NCAPG2 Missense_Mutation p.Y981H 0.05 tolerated(1) benign(0.001) TCGA-S9-A89Z-01 7 4091419 4091419 C T SDK1 Silent p.D956D 0.41 TCGA-S9-A89Z-01 8 103335639 103335639 T C UBR5 Missense_Mutation p.M562V 0.35 tolerated(0.07) benign(0.002) TCGA-S9-A89Z-01 8 42229122 42229122 A G POLB Missense_Mutation p.I319V 0.21 tolerated(0.73) benign(0.027) TCGA-S9-A89Z-01 9 125652610 125652610 T A RC3H2 Silent p.G188G 0.09 TCGA-S9-A89Z-01 9 132482974 132482974 G A PRRX2 Missense_Mutation p.A183T 0.34 tolerated(0.09) benign(0.022) TCGA-S9-A89Z-01 9 27284786 27284786 T C EQTN Missense_Mutation p.T274A 0.41 tolerated(0.09) benign(0.002) TCGA-S9-A89Z-01 X 65835830 65835830 T C EDA2R Silent p.Q11Q 0.71 TCGA-TM-A7C3-01 10 129921413 129921413 C T MKI67 Missense_Mutation p.R38H 0.79 deleterious(0) probably_damaging(0.999) TCGA-TM-A7C3-01 11 1271690 1271690 C A MUC5B Missense_Mutation p.S4527Y 0.27 unknown(0) TCGA-TM-A7C3-01 11 4903844 4903844 G T OR51T1 Missense_Mutation p.A266S 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-TM-A7C3-01 11 59949075 59949075 G A MS4A6A Silent p.H70H 0.26 TCGA-TM-A7C3-01 11 70011580 70011580 C T ANO1 Missense_Mutation p.A652V 0.75 deleterious(0.01) probably_damaging(0.952) TCGA-TM-A7C3-01 12 11183917 11183917 G A TAS2R31 Silent p.P6P 0.12 TCGA-TM-A7C3-01 12 13717356 13717356 C T GRIN2B Missense_Mutation p.R939H 0.24 tolerated(0.13) benign(0.136) TCGA-TM-A7C3-01 12 48377906 48377906 A G COL2A1 Silent p.D635D 0.40 TCGA-TM-A7C3-01 12 978106 978106 G A WNK1 Intron 0.21 TCGA-TM-A7C3-01 13 29599192 29599192 T A MTUS2 Missense_Mutation p.D129E 0.12 tolerated(0.15) benign(0.124) TCGA-TM-A7C3-01 14 105418755 105418755 C T AHNAK2 Silent p.S1011S 0.46 TCGA-TM-A7C3-01 14 22337418 22337418 G A TRAV13-1 Missense_Mutation p.R70H 0.44 tolerated(0.6) benign(0.02) TCGA-TM-A7C3-01 14 24634044 24634044 C T IRF9 Nonsense_Mutation p.Q291* 0.18 TCGA-TM-A7C3-01 15 51240332 51240332 G A AP4E1 Missense_Mutation p.G431D 0.05 deleterious(0.01) probably_damaging(0.955) TCGA-TM-A7C3-01 15 56721344 56721344 G A MNS1 Silent p.F481F 0.21 TCGA-TM-A7C3-01 16 16150051 16150051 G C ABCC1 Missense_Mutation p.D526H 0.41 deleterious(0.01) possibly_damaging(0.695) TCGA-TM-A7C3-01 16 89813023 89813023 G A FANCA Missense_Mutation p.T1161M 0.17 deleterious(0.01) benign(0) TCGA-TM-A7C3-01 17 10404812 10404812 C T MYH1 Missense_Mutation p.R1118H 0.37 deleterious(0.04) probably_damaging(0.952) TCGA-TM-A7C3-01 17 26817852 26817852 G A SLC13A2 Missense_Mutation p.V217I 0.35 tolerated(0.47) benign(0.003) TCGA-TM-A7C3-01 17 34074958 34074958 G A GAS2L2 Missense_Mutation p.R248W 0.20 deleterious(0) probably_damaging(1) TCGA-TM-A7C3-01 17 38645139 38645139 C T TNS4 Silent p.P174P 0.12 TCGA-TM-A7C3-01 17 39659673 39659673 G A KRT13 Missense_Mutation p.R201C 0.48 deleterious(0.02) probably_damaging(0.996) TCGA-TM-A7C3-01 17 78447110 78447110 C T NPTX1 Missense_Mutation p.A263T 0.17 deleterious(0.03) benign(0.105) TCGA-TM-A7C3-01 17 7850971 7850971 C T CNTROB Silent p.D692D 0.33 TCGA-TM-A7C3-01 18 47329202 47329202 T C ACAA2 Missense_Mutation p.K13R 0.53 tolerated(0.14) probably_damaging(0.991) TCGA-TM-A7C3-01 19 11170533 11170533 G A SMARCA4 Silent p.E1580E 0.18 TCGA-TM-A7C3-01 19 18170387 18170387 C T IL12RB1 3'UTR 0.29 TCGA-TM-A7C3-01 19 19675808 19675808 C T PBX4 Missense_Mutation p.A287T 0.13 deleterious(0.02) benign(0.128) TCGA-TM-A7C3-01 19 2808387 2808387 A G THOP1 Missense_Mutation p.E467G 0.38 deleterious(0.02) benign(0.261) TCGA-TM-A7C3-01 19 42489240 42489240 C T ATP1A3 Missense_Mutation p.A288T 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-TM-A7C3-01 19 6664984 6664984 G A TNFSF14 Nonsense_Mutation p.R226* 0.28 TCGA-TM-A7C3-01 1 155058634 155058634 C T EFNA3 Missense_Mutation p.T180I 0.24 tolerated(0.1) benign(0.382) TCGA-TM-A7C3-01 1 155935533 155935533 G A ARHGEF2 Missense_Mutation p.P120L 0.30 deleterious(0) probably_damaging(0.983) TCGA-TM-A7C3-01 1 179319441 179319441 A G SOAT1 Missense_Mutation p.K442R 0.42 tolerated(0.56) benign(0.119) TCGA-TM-A7C3-01 1 207966973 207966973 G C CD46 3'UTR 0.43 TCGA-TM-A7C3-01 1 215808006 215808006 C T USH2A Missense_Mutation p.R5031Q 0.35 benign(0.001) TCGA-TM-A7C3-01 1 248525695 248525695 C A OR2T4 Silent p.A271A 0.41 TCGA-TM-A7C3-01 1 47024399 47024399 C T MKNK1 Missense_Mutation p.E416K 0.16 tolerated(0.14) possibly_damaging(0.453) TCGA-TM-A7C3-01 1 65273098 65273098 C G RAVER2 Missense_Mutation p.L528V 0.10 tolerated(0.19) benign(0.013) TCGA-TM-A7C3-01 1 75038691 75038691 C T C1orf173 Silent p.K901K 0.03 TCGA-TM-A7C3-01 20 3686553 3686553 G A SIGLEC1 Missense_Mutation p.R182C 0.18 deleterious(0.03) probably_damaging(0.953) TCGA-TM-A7C3-01 20 43836216 43836216 C T SEMG1 Missense_Mutation p.T93M 0.19 tolerated(0.44) benign(0.04) TCGA-TM-A7C3-01 2 165997166 165997166 G A SCN3A Missense_Mutation p.P672S 0.45 tolerated(0.08) possibly_damaging(0.535) TCGA-TM-A7C3-01 2 170417211 170417213 AAG - FASTKD1 In_Frame_Del p.L219del 0.22 TCGA-TM-A7C3-01 2 219602960 219602960 G A TTLL4 Silent p.A187A 0.46 TCGA-TM-A7C3-01 2 238280552 238280552 C T COL6A3 Missense_Mutation p.A1370T 0.10 probably_damaging(0.914) TCGA-TM-A7C3-01 2 9574027 9574027 C A CPSF3 Missense_Mutation p.Q183K 0.39 deleterious(0.01) benign(0.148) TCGA-TM-A7C3-01 3 186024718 186024718 C T DGKG Missense_Mutation p.G39E 0.17 deleterious(0.01) possibly_damaging(0.847) TCGA-TM-A7C3-01 3 62463981 62463981 C T CADPS Missense_Mutation p.R1095Q 0.16 deleterious(0) benign(0.238) TCGA-TM-A7C3-01 4 148605024 148605024 G A PRMT10 Nonsense_Mutation p.Q39* 0.23 TCGA-TM-A7C3-01 4 183664409 183664409 C T TENM3 Missense_Mutation p.R1156C 0.26 deleterious(0) benign(0.095) TCGA-TM-A7C3-01 5 140719294 140719294 G A PCDHGA2 Silent p.P252P 0.28 TCGA-TM-A7C3-01 5 140744172 140744172 G A PCDHGA5 Missense_Mutation p.R92Q 0.19 deleterious_low_confidence(0.01) probably_damaging(0.944) TCGA-TM-A7C3-01 5 170692729 170692729 G A RANBP17 Missense_Mutation p.V941I 0.19 tolerated(0.16) benign(0.051) TCGA-TM-A7C3-01 5 37000657 37000657 C T NIPBL Missense_Mutation p.P1163S 0.27 deleterious(0) probably_damaging(0.998) TCGA-TM-A7C3-01 5 488443 488443 G A SLC9A3 Silent p.D221D 0.18 TCGA-TM-A7C3-01 6 28121482 28121482 C A ZKSCAN8 Nonsense_Mutation p.S475* 0.38 TCGA-TM-A7C3-01 6 72889437 72889437 C T RIMS1 Nonsense_Mutation p.R211* 0.32 TCGA-TM-A7C3-01 6 74227575 74227575 G C EEF1A1 Silent p.G449G 0.29 TCGA-TM-A7C3-01 7 117874919 117874919 G A ANKRD7 Silent p.A153A 0.10 TCGA-TM-A7C3-01 7 124386977 124386977 G A GPR37 Missense_Mutation p.R482W 0.14 deleterious(0) probably_damaging(0.999) TCGA-TM-A7C3-01 7 126409978 126409978 C T GRM8 Missense_Mutation p.R433Q 0.36 tolerated(0.53) benign(0.01) TCGA-TM-A7C3-01 7 31682624 31682624 C T CCDC129 Missense_Mutation p.P573L 0.15 tolerated(0.12) possibly_damaging(0.705) TCGA-TM-A7C3-01 7 44560403 44560403 T C NPC1L1 Missense_Mutation p.S1033G 0.31 tolerated(0.65) benign(0.002) TCGA-TM-A7C3-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.71 deleterious(0.02) probably_damaging(0.974) TCGA-TM-A7C3-01 8 25253206 25253206 G A DOCK5 Missense_Mutation p.V1559I 0.54 deleterious(0) probably_damaging(0.996) TCGA-TM-A7C3-01 8 41530255 41530255 C T ANK1 Silent p.A1612A 0.38 TCGA-TM-A7C3-01 8 73480009 73480009 T C KCNB2 Missense_Mutation p.S14P 0.41 deleterious(0.02) benign(0.078) TCGA-TM-A7C3-01 X 123179121 123179121 C T STAG2 Silent p.I190I 0.44 TCGA-TM-A7C3-01 X 123227873 123227873 G A STAG2 Missense_Mutation p.R1195H 0.35 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-TM-A7C3-01 X 138864753 138864753 A G ATP11C Silent p.D638D 0.48 TCGA-TM-A7C3-01 X 151304073 151304073 C T MAGEA10 Missense_Mutation p.R7H 0.44 tolerated(0.27) probably_damaging(0.98) TCGA-TM-A7C3-01 X 153036313 153036313 G A PLXNB3 Missense_Mutation p.R727H 0.16 tolerated(0.26) benign(0.005) TCGA-TM-A7C3-01 X 20033363 20033363 T G MAP7D2 Missense_Mutation p.Q576P 0.13 deleterious(0) unknown(0) TCGA-TM-A7C3-01 X 48780339 48780339 G C OTUD5 3'UTR 0.22 TCGA-TM-A7C3-01 X 70352986 70352986 G A MED12 Nonsense_Mutation p.W1514* 0.39 TCGA-TM-A7C4-01 11 14515962 14515962 T C COPB1 Missense_Mutation p.T39A 0.50 tolerated(0.2) benign(0.009) TCGA-TM-A7C4-01 11 55681814 55681814 A G OR5W2 Missense_Mutation p.L82P 0.34 deleterious(0.02) possibly_damaging(0.666) TCGA-TM-A7C4-01 11 59225062 59225062 G T OR4D6 Missense_Mutation p.W210L 0.23 tolerated(0.25) possibly_damaging(0.513) TCGA-TM-A7C4-01 11 76371945 76371945 T G LRRC32 Missense_Mutation p.E231A 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-TM-A7C4-01 12 53344556 53344556 C T KRT18 Missense_Mutation p.R175C 0.29 tolerated(0.24) benign(0.009) TCGA-TM-A7C4-01 12 70956725 70956725 C G PTPRB Missense_Mutation p.S1356T 0.44 tolerated(0.17) benign(0.008) TCGA-TM-A7C4-01 13 111296777 111296777 A G CARS2 Silent p.F457F 0.36 TCGA-TM-A7C4-01 14 20852762 20852762 C T TEP1 Missense_Mutation p.R1073H 0.32 tolerated(0.13) benign(0.013) TCGA-TM-A7C4-01 16 19590441 19590441 C A C16orf62 Missense_Mutation p.D256E 0.21 tolerated(0.19) possibly_damaging(0.794) TCGA-TM-A7C4-01 16 27503949 27503949 C G GTF3C1 Missense_Mutation p.D988H 0.05 deleterious(0) probably_damaging(0.99) TCGA-TM-A7C4-01 17 10300287 10300287 G A MYH8 Missense_Mutation p.R1399C 0.35 deleterious(0) probably_damaging(0.982) TCGA-TM-A7C4-01 17 39659673 39659673 G A KRT13 Missense_Mutation p.R201C 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-TM-A7C4-01 17 39674590 39674590 G A KRT15 Missense_Mutation p.R164W 0.33 deleterious(0.03) benign(0.231) TCGA-TM-A7C4-01 17 45234392 45234392 A G CDC27 Silent p.D243D 0.06 TCGA-TM-A7C4-01 17 7577115 7577115 A C TP53 Missense_Mutation p.C275G 0.58 deleterious(0) probably_damaging(0.991) TCGA-TM-A7C4-01 19 15284920 15284920 G A NOTCH3 Silent p.S1565S 0.41 TCGA-TM-A7C4-01 19 19790321 19790321 G A ZNF101 Missense_Mutation p.G175R 0.37 deleterious(0.01) probably_damaging(0.944) TCGA-TM-A7C4-01 19 4290666 4290666 C T SHD 3'UTR 0.42 TCGA-TM-A7C4-01 19 47774919 47774919 C T CCDC9 Missense_Mutation p.P527L 0.29 deleterious_low_confidence(0) unknown(0) TCGA-TM-A7C4-01 19 55435002 55435002 C T NLRP7 3'UTR 0.11 TCGA-TM-A7C4-01 1 100356833 100356833 G A AGL Missense_Mutation p.C957Y 0.36 deleterious(0) probably_damaging(0.98) TCGA-TM-A7C4-01 1 167802329 167802329 T G ADCY10 Silent p.R1163R 0.39 TCGA-TM-A7C4-01 20 44004019 44004019 G A TP53TG5 Missense_Mutation p.T143M 0.22 tolerated(0.11) benign(0.205) TCGA-TM-A7C4-01 2 136558246 136558246 G T LCT Missense_Mutation p.S1599R 0.22 deleterious(0) possibly_damaging(0.616) TCGA-TM-A7C4-01 2 166032912 166032912 T C SCN3A 5'UTR 0.28 TCGA-TM-A7C4-01 2 179474646 179474646 C T TTN Nonsense_Mutation p.W17168* 0.26 TCGA-TM-A7C4-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A7C4-01 2 61149557 61149557 A T REL Missense_Mutation p.S583C 0.24 tolerated_low_confidence(0.05) possibly_damaging(0.711) TCGA-TM-A7C4-01 2 65298755 65298755 C G CEP68 Silent p.L175L 0.25 TCGA-TM-A7C4-01 2 65298777 65298777 T C CEP68 Missense_Mutation p.S183P 0.24 tolerated(0.21) benign(0.027) TCGA-TM-A7C4-01 3 113377453 113377453 T A KIAA2018 Missense_Mutation p.M1026L 0.09 benign(0.003) TCGA-TM-A7C4-01 3 121712253 121712253 C T ILDR1 Missense_Mutation p.R448H 0.27 tolerated(0.23) benign(0) TCGA-TM-A7C4-01 3 141289844 141289844 C G RASA2 Missense_Mutation p.D318E 0.40 deleterious(0) possibly_damaging(0.602) TCGA-TM-A7C4-01 3 62268456 62268456 G C PTPRG Missense_Mutation p.D1323H 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-TM-A7C4-01 5 131714135 131714135 G A SLC22A5 Silent p.V153V 0.35 TCGA-TM-A7C4-01 6 105300205 105300205 C T HACE1 Missense_Mutation p.A40T 0.30 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-TM-A7C4-01 6 116720523 116720523 A G DSE Missense_Mutation p.N37S 0.14 tolerated_low_confidence(0.28) benign(0.291) TCGA-TM-A7C4-01 7 142104391 142104394 TGAG - TRBV6-9 Frame_Shift_Del p.T24Rfs*8 0.09 TCGA-TM-A7C4-01 8 11710899 11710899 G A CTSB Missense_Mutation p.S22F 0.04 tolerated(0.54) benign(0.001) TCGA-TM-A7C4-01 9 138378948 138378948 C T PPP1R26 Silent p.T864T 0.07 TCGA-TM-A7C4-01 X 101572394 101572394 C T NXF2 Missense_Mutation p.R98C 0.17 tolerated(0.08) benign(0) TCGA-TM-A7C4-01 X 14861672 14861672 T C FANCB 3'UTR 0.14 TCGA-TM-A7C4-01 X 17750478 17750478 T C NHS Missense_Mutation p.V1596A 0.32 tolerated(0.08) benign(0.013) TCGA-TM-A7C4-01 X 18600037 18600037 A G CDKL5 Missense_Mutation p.S144G 0.29 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-TM-A7C4-01 X 49851229 49851229 C T CLCN5 Missense_Mutation p.T420I 0.33 deleterious(0) possibly_damaging(0.641) TCGA-TM-A7C4-01 X 76920261 76920261 G T ATRX Silent p.A1272A 0.26 TCGA-TM-A7C4-01 X 76940430 76940430 C T ATRX Splice_Site p.X221_splice 0.19 TCGA-TM-A7C4-01 X 83442862 83442862 C G RPS6KA6 Missense_Mutation p.E16Q 0.32 tolerated_low_confidence(0.49) benign(0.087) TCGA-TM-A7C5-01 12 64803777 64803777 G A XPOT 5'UTR 0.14 TCGA-TM-A7C5-01 13 21557518 21557518 G A LATS2 Missense_Mutation p.T776I 0.06 tolerated(0.1) probably_damaging(0.999) TCGA-TM-A7C5-01 14 106091267 106091267 C T IGHG4 Silent p.P209P 0.26 TCGA-TM-A7C5-01 15 43819305 43819305 G A MAP1A Nonsense_Mutation p.W1878* 0.13 TCGA-TM-A7C5-01 15 90774627 90774627 G A CIB1 Missense_Mutation p.T103M 0.72 deleterious(0) probably_damaging(1) TCGA-TM-A7C5-01 16 22161160 22161160 G A VWA3A Missense_Mutation p.V1013M 0.25 deleterious(0.04) possibly_damaging(0.603) TCGA-TM-A7C5-01 19 11406879 11406879 C T TSPAN16 5'UTR 0.21 TCGA-TM-A7C5-01 19 17015067 17015067 C T CPAMD8 Missense_Mutation p.R1454Q 0.19 tolerated(0.08) possibly_damaging(0.747) TCGA-TM-A7C5-01 19 42791869 42791869 T C CIC Missense_Mutation p.L252P 0.51 probably_damaging(0.999) TCGA-TM-A7C5-01 19 42796552 42796555 TCTG - CIC Frame_Shift_Del p.S1037* 0.21 TCGA-TM-A7C5-01 1 100477024 100477024 G A SLC35A3 Missense_Mutation p.G190E 0.27 deleterious(0) probably_damaging(0.992) TCGA-TM-A7C5-01 1 240371406 240371406 T A FMN2 Silent p.P1098P 0.21 TCGA-TM-A7C5-01 20 3615007 3615007 C T ATRN Nonsense_Mutation p.Q1305* 0.24 TCGA-TM-A7C5-01 2 136569943 136569943 T A LCT Missense_Mutation p.N764I 0.10 deleterious(0.01) benign(0.094) TCGA-TM-A7C5-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A7C5-01 2 216977761 216977761 A G XRCC5 Missense_Mutation p.D15G 0.43 deleterious(0) probably_damaging(1) TCGA-TM-A7C5-01 2 85826176 85826176 G A TMEM150A 3'UTR 0.06 TCGA-TM-A7C5-01 3 46542360 46542360 G A RTP3 Missense_Mutation p.V224M 0.21 tolerated_low_confidence(0.07) benign(0.194) TCGA-TM-A7C5-01 4 106158719 106158719 G C TET2 Intron 0.60 TCGA-TM-A7C5-01 4 119626790 119626790 G A METTL14 Missense_Mutation p.G294R 0.15 deleterious(0) probably_damaging(1) TCGA-TM-A7C5-01 4 41652571 41652571 C T LIMCH1 Silent p.N609N 0.24 TCGA-TM-A7C5-01 5 1057736 1057736 G A SLC12A7 Missense_Mutation p.A959V 0.09 tolerated(0.15) benign(0.148) TCGA-TM-A7C5-01 5 140769051 140769051 G A PCDHGB4 Missense_Mutation p.D534N 0.28 deleterious(0.01) possibly_damaging(0.84) TCGA-TM-A7C5-01 5 93386527 93386527 A C FAM172A Nonsense_Mutation p.L73* 0.46 TCGA-TM-A7C5-01 6 144835835 144835835 G A UTRN Missense_Mutation p.R1708H 0.16 tolerated(0.12) benign(0.066) TCGA-TM-A7C5-01 6 97344686 97344686 A T NDUFAF4 Missense_Mutation p.D58E 0.06 deleterious(0) possibly_damaging(0.641) TCGA-TM-A7C5-01 7 100421309 100421309 G T EPHB4 Missense_Mutation p.A123D 0.43 deleterious(0.02) probably_damaging(1) TCGA-TM-A7C5-01 7 30693212 30693212 C T CRHR2 Missense_Mutation p.R394H 0.16 deleterious(0) probably_damaging(0.979) TCGA-TM-A7C5-01 7 55863492 55863492 C A SEPT14 3'UTR 0.38 TCGA-TM-A7C5-01 8 59750659 59750659 A C TOX Nonsense_Mutation p.L302* 0.47 TCGA-TM-A7C5-01 9 112918685 112918685 G A PALM2-AKAP2 Missense_Mutation p.G1028R 0.17 deleterious(0) probably_damaging(1) TCGA-TM-A7C5-01 9 113238566 113238566 G A SVEP1 Silent p.D839D 0.15 TCGA-TM-A7C5-01 9 91727511 91727511 T C SHC3 Missense_Mutation p.M169V 0.34 deleterious(0) possibly_damaging(0.504) TCGA-TM-A7C5-01 X 102632824 102632824 T C NGFRAP1 3'UTR 0.50 TCGA-TM-A7C5-01 X 107084062 107084062 G A MID2 Missense_Mutation p.R56H 0.56 deleterious(0.04) probably_damaging(0.999) TCGA-TM-A7C5-01 X 132351042 132351042 T C TFDP3 3'UTR 0.95 TCGA-TM-A7CA-01 10 112361522 112361522 G C SMC3 Missense_Mutation p.K924N 0.06 deleterious(0.01) possibly_damaging(0.733) TCGA-TM-A7CA-01 10 124097550 124097550 G A BTBD16 Missense_Mutation p.V491M 0.04 deleterious(0.04) benign(0.316) TCGA-TM-A7CA-01 10 17110716 17110716 T C CUBN Silent p.T893T 0.23 TCGA-TM-A7CA-01 10 17726892 17726892 A G STAM Missense_Mutation p.D88G 0.28 deleterious(0) possibly_damaging(0.497) TCGA-TM-A7CA-01 10 43615005 43615005 G A RET Missense_Mutation p.A807T 0.33 deleterious(0) probably_damaging(0.996) TCGA-TM-A7CA-01 11 102076697 102076697 A G YAP1 Silent p.G292G 0.06 TCGA-TM-A7CA-01 11 56258358 56258358 G T OR5M8 Nonsense_Mutation p.Y163* 0.06 TCGA-TM-A7CA-01 11 63919827 63919827 G T MACROD1 Missense_Mutation p.H113N 0.30 tolerated(0.06) probably_damaging(0.974) TCGA-TM-A7CA-01 11 65653868 65653868 T C FIBP Missense_Mutation p.K146R 0.05 deleterious(0.01) probably_damaging(0.985) TCGA-TM-A7CA-01 11 94328504 94328504 C T PIWIL4 Nonsense_Mutation p.Q394* 0.04 TCGA-TM-A7CA-01 12 46123899 46123903 TACTT - ARID2 Frame_Shift_Del p.T56Rfs*8 0.43 TCGA-TM-A7CA-01 12 51882498 51882498 C T SLC4A8 Missense_Mutation p.R768C 0.35 deleterious(0) probably_damaging(0.999) TCGA-TM-A7CA-01 14 39763257 39763257 C G CTAGE5 Silent p.L188L 0.06 TCGA-TM-A7CA-01 15 96875568 96875568 G C NR2F2 Missense_Mutation p.E78D 0.41 tolerated(0.59) benign(0.107) TCGA-TM-A7CA-01 16 30081251 30081253 CTC - ALDOA In_Frame_Del p.S355del 0.17 TCGA-TM-A7CA-01 16 76592612 76592615 TAGT - CNTNAP4 3'Flank 0.42 TCGA-TM-A7CA-01 16 8990887 8990887 C T USP7 Missense_Mutation p.E930K 0.05 tolerated(0.3) benign(0.011) TCGA-TM-A7CA-01 17 57990092 57990092 A G RPS6KB1 Missense_Mutation p.N80S 0.32 deleterious(0.01) probably_damaging(0.989) TCGA-TM-A7CA-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.40 TCGA-TM-A7CA-01 17 7579420 7579420 G - TP53 Frame_Shift_Del p.S90Pfs*33 0.41 TCGA-TM-A7CA-01 17 76109632 76109636 CTCCT - TMC6 Frame_Shift_Del p.R783Qfs*18 0.38 TCGA-TM-A7CA-01 19 12551774 12551774 G A CTD-3105H18.16 5'UTR 0.36 TCGA-TM-A7CA-01 19 17531345 17531345 A G MVB12A Splice_Site p.X64_splice 0.33 TCGA-TM-A7CA-01 19 39989627 39989627 C G DLL3 Missense_Mutation p.R5G 0.05 deleterious_low_confidence(0.03) benign(0.061) TCGA-TM-A7CA-01 1 158615124 158615124 C G SPTA1 Missense_Mutation p.D1350H 0.06 tolerated(0.1) probably_damaging(0.95) TCGA-TM-A7CA-01 1 215972326 215972326 C G USH2A Missense_Mutation p.C3294S 0.08 probably_damaging(1) TCGA-TM-A7CA-01 1 237604643 237604643 A G RYR2 Missense_Mutation p.K344E 0.43 possibly_damaging(0.498) TCGA-TM-A7CA-01 1 248039310 248039310 A G TRIM58 Missense_Mutation p.E327G 0.06 deleterious(0.01) probably_damaging(0.948) TCGA-TM-A7CA-01 1 27100175 27100176 - C ARID1A Frame_Shift_Ins p.Q1327Afs*11 0.33 TCGA-TM-A7CA-01 20 5282783 5282783 C T PROKR2 Missense_Mutation p.R353H 0.27 tolerated(0.16) benign(0.004) TCGA-TM-A7CA-01 2 11702615 11702615 G A GREB1 Missense_Mutation p.E62K 0.05 tolerated(0.38) benign(0.423) TCGA-TM-A7CA-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A7CA-01 3 133913946 133913946 T C RYK Missense_Mutation p.N288S 0.41 tolerated(0.4) possibly_damaging(0.481) TCGA-TM-A7CA-01 3 187088818 187088818 A T RTP4 Missense_Mutation p.K133M 0.46 deleterious(0.04) probably_damaging(0.985) TCGA-TM-A7CA-01 4 31144318 31144318 G T PCDH7 Silent p.L1205L 0.05 TCGA-TM-A7CA-01 4 47514779 47514779 T C ATP10D Silent p.N74N 0.46 TCGA-TM-A7CA-01 5 76715664 76715664 A G PDE8B Silent p.E734E 0.29 TCGA-TM-A7CA-01 6 105606400 105606400 C T POPDC3 Missense_Mutation p.R274H 0.41 tolerated(0.06) benign(0.041) TCGA-TM-A7CA-01 6 32724136 32724136 G C HLA-DQB2 3'UTR 0.36 TCGA-TM-A7CA-01 7 113519703 113519703 A G PPP1R3A Silent p.L482L 0.05 TCGA-TM-A7CA-01 9 100849858 100849858 G A TRIM14 Missense_Mutation p.T408M 0.10 deleterious(0.02) benign(0.327) TCGA-TM-A7CA-01 9 126133603 126133603 C G CRB2 Missense_Mutation p.L728V 0.06 deleterious(0) benign(0.364) TCGA-TM-A7CA-01 9 132576341 132576343 CTC - TOR1A In_Frame_Del p.E303del 0.39 TCGA-TM-A7CA-01 9 34635806 34635806 C T SIGMAR1 Silent p.G165G 0.46 TCGA-TM-A7CA-01 9 43627014 43627014 A G SPATA31A6 Missense_Mutation p.V558A 0.03 tolerated(0.51) benign(0.037) TCGA-TM-A7CA-01 X 76890157 76890158 CA - ATRX Frame_Shift_Del p.V1579Efs*21 0.54 TCGA-TM-A7CF-01 10 75549206 75549206 G A ZSWIM8 Missense_Mutation p.R180H 0.40 deleterious(0) probably_damaging(0.993) TCGA-TM-A7CF-01 11 30942332 30942332 C T DCDC1 Missense_Mutation p.S1095N 0.35 tolerated(0.38) benign(0.383) TCGA-TM-A7CF-01 11 5906021 5906021 C T OR52E4 Missense_Mutation p.R167C 0.35 deleterious(0) probably_damaging(0.996) TCGA-TM-A7CF-01 12 52685222 52685222 G A KRT81 Missense_Mutation p.R10C 0.16 deleterious(0) possibly_damaging(0.587) TCGA-TM-A7CF-01 12 7086824 7086824 C T LPCAT3 Missense_Mutation p.G375D 0.05 deleterious(0) probably_damaging(1) TCGA-TM-A7CF-01 12 8612205 8612205 T G CLEC6A Missense_Mutation p.F45C 0.09 deleterious(0.01) possibly_damaging(0.87) TCGA-TM-A7CF-01 12 8612215 8612215 T G CLEC6A Silent p.G48G 0.09 TCGA-TM-A7CF-01 13 25399793 25399793 A G RNF17 Missense_Mutation p.I710V 0.29 tolerated(0.06) benign(0.001) TCGA-TM-A7CF-01 13 37439796 37439796 C T SMAD9 Missense_Mutation p.R294Q 0.10 tolerated(0.09) benign(0.301) TCGA-TM-A7CF-01 15 86287010 86287010 G A AKAP13 Silent p.K2786K 0.10 TCGA-TM-A7CF-01 16 84623755 84623755 C T COTL1 Missense_Mutation p.A92T 0.06 deleterious(0) probably_damaging(1) TCGA-TM-A7CF-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.43 deleterious(0) probably_damaging(0.998) TCGA-TM-A7CF-01 17 7578206 7578206 T C TP53 Missense_Mutation p.S215G 0.32 deleterious(0.01) probably_damaging(1) TCGA-TM-A7CF-01 18 31709985 31709985 C T NOL4 Splice_Site p.X89_splice 0.09 TCGA-TM-A7CF-01 18 5291231 5291231 T G ZBTB14 Missense_Mutation p.I326L 0.31 tolerated(0.67) probably_damaging(0.956) TCGA-TM-A7CF-01 1 109810235 109810235 T C CELSR2 Missense_Mutation p.S2027P 0.29 deleterious(0.01) possibly_damaging(0.899) TCGA-TM-A7CF-01 1 17084996 17084996 C T MST1L RNA 0.05 TCGA-TM-A7CF-01 1 36752690 36752690 C G THRAP3 Missense_Mutation p.L287V 0.35 tolerated(0.44) benign(0.005) TCGA-TM-A7CF-01 20 62493651 62493651 C T ABHD16B Missense_Mutation p.A253V 0.32 deleterious(0) probably_damaging(1) TCGA-TM-A7CF-01 22 19381985 19381985 C A HIRA Silent p.G234G 0.10 TCGA-TM-A7CF-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A7CF-01 2 220371481 220371481 G C GMPPA Missense_Mutation p.K408N 0.32 deleterious(0) probably_damaging(0.999) TCGA-TM-A7CF-01 2 225740826 225740826 C T DOCK10 Missense_Mutation p.R287H 0.07 deleterious(0.01) probably_damaging(0.937) TCGA-TM-A7CF-01 2 241078762 241078762 G A OTOS Missense_Mutation p.A32V 0.38 tolerated(0.28) possibly_damaging(0.491) TCGA-TM-A7CF-01 3 12950911 12950911 T G IQSEC1 Missense_Mutation p.T828P 0.08 deleterious(0.05) possibly_damaging(0.801) TCGA-TM-A7CF-01 3 196388024 196388024 G A NRROS Missense_Mutation p.A504T 0.39 tolerated(0.76) benign(0.003) TCGA-TM-A7CF-01 3 64640136 64640136 T C ADAMTS9 Splice_Site p.X404_splice 0.07 TCGA-TM-A7CF-01 4 155505941 155505941 C A FGA Missense_Mutation p.G646C 0.16 deleterious(0) probably_damaging(0.998) TCGA-TM-A7CF-01 4 69973922 69973922 G A UGT2B7 Missense_Mutation p.D398N 0.08 deleterious(0.04) benign(0.222) TCGA-TM-A7CF-01 4 79462267 79462267 A C FRAS1 Missense_Mutation p.T4010P 0.25 probably_damaging(0.999) TCGA-TM-A7CF-01 5 17354246 17354246 G A CTD-2139B15.2 RNA 0.07 TCGA-TM-A7CF-01 5 7867503 7867504 CT - FASTKD3 Frame_Shift_Del p.G232Lfs*14 0.13 TCGA-TM-A7CF-01 5 89989828 89989828 C G GPR98 Missense_Mutation p.P2419A 0.48 possibly_damaging(0.811) TCGA-TM-A7CF-01 6 30570090 30570090 C T PPP1R10 Missense_Mutation p.S779N 0.05 tolerated_low_confidence(1) unknown(0) TCGA-TM-A7CF-01 6 52548949 52548949 G C TMEM14A Missense_Mutation p.L82F 0.25 deleterious(0.02) benign(0.317) TCGA-TM-A7CF-01 6 89638748 89638748 C T RNGTT Missense_Mutation p.R108H 0.10 tolerated(0.09) benign(0.01) TCGA-TM-A7CF-01 6 90437549 90437549 C G MDN1 Intron 0.61 TCGA-TM-A7CF-01 9 131468118 131468118 C A PKN3 Missense_Mutation p.A124D 0.21 deleterious(0) probably_damaging(0.983) TCGA-TM-A7CF-01 X 131351120 131351120 T C RAP2C Silent p.A59A 0.04 TCGA-TM-A7CF-01 X 153585626 153585626 G T FLNA Missense_Mutation p.H1654Q 0.39 tolerated(0.06) probably_damaging(0.932) TCGA-TM-A7CF-01 X 77301960 77301960 T C ATP7A Missense_Mutation p.S1466P 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-TM-A84B-01 10 43292066 43292066 C T BMS1 Silent p.N458N 0.65 TCGA-TM-A84B-01 10 70986987 70986987 C T HKDC1 Missense_Mutation p.R30W 0.10 deleterious(0.01) probably_damaging(0.977) TCGA-TM-A84B-01 10 89712016 89712019 AGTA - PTEN Splice_Site p.X212_splice 0.82 TCGA-TM-A84B-01 11 47469622 47469622 G A RAPSN Silent p.R91R 0.28 TCGA-TM-A84B-01 12 81746923 81746923 A G PPFIA2 Silent p.L657L 0.39 TCGA-TM-A84B-01 14 60908817 60908817 A G C14orf39 Silent p.N512N 0.42 TCGA-TM-A84B-01 15 50497454 50497454 G A SLC27A2 Missense_Mutation p.R289Q 0.40 deleterious(0) probably_damaging(0.99) TCGA-TM-A84B-01 16 28943382 28943382 G A CD19 Missense_Mutation p.E21K 0.50 deleterious(0.04) benign(0.016) TCGA-TM-A84B-01 16 67913854 67913854 T C EDC4 Silent p.A641A 0.44 TCGA-TM-A84B-01 16 69971126 69971126 C T WWP2 Silent p.D741D 0.50 TCGA-TM-A84B-01 17 15341350 15341350 G A CDRT4 Nonsense_Mutation p.Q66* 0.51 TCGA-TM-A84B-01 17 73144759 73144759 G A HN1 Missense_Mutation p.R22W 0.05 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-TM-A84B-01 18 61264400 61264400 G A SERPINB13 Missense_Mutation p.A327T 0.44 deleterious(0.04) benign(0.132) TCGA-TM-A84B-01 19 10659651 10659651 C T ATG4D Silent p.L303L 0.53 TCGA-TM-A84B-01 19 34685400 34685400 G A LSM14A Missense_Mutation p.E47K 0.43 deleterious(0) probably_damaging(1) TCGA-TM-A84B-01 19 34685448 34685448 G A LSM14A Missense_Mutation p.E63K 0.39 deleterious(0) possibly_damaging(0.774) TCGA-TM-A84B-01 19 34685496 34685496 G A LSM14A Missense_Mutation p.E79K 0.43 deleterious(0) possibly_damaging(0.602) TCGA-TM-A84B-01 19 39234911 39234911 G A CAPN12 5'UTR 0.85 TCGA-TM-A84B-01 19 45017234 45017234 C G CEACAM20 RNA 0.41 TCGA-TM-A84B-01 19 55494752 55494752 C T NLRP2 Silent p.N562N 0.30 TCGA-TM-A84B-01 19 6664992 6664992 C T TNFSF14 Missense_Mutation p.R223H 0.35 tolerated(0.42) benign(0.014) TCGA-TM-A84B-01 1 228564858 228564858 C T OBSCN Silent p.R8672R 0.33 TCGA-TM-A84B-01 1 235543460 235543460 G C TBCE Silent p.V32V 0.37 TCGA-TM-A84B-01 20 44839196 44839196 G C CDH22 Missense_Mutation p.L346V 0.42 tolerated(0.16) possibly_damaging(0.806) TCGA-TM-A84B-01 20 7915166 7915166 A T HAO1 Missense_Mutation p.M85K 0.45 deleterious(0) probably_damaging(0.965) TCGA-TM-A84B-01 22 50705842 50705842 C T MAPK11 Silent p.E125E 0.86 TCGA-TM-A84B-01 2 108455411 108455411 T C RGPD4 Silent p.Y132Y 0.46 TCGA-TM-A84B-01 2 1653369 1653369 C T PXDN Missense_Mutation p.R728H 0.45 tolerated(0.19) benign(0.035) TCGA-TM-A84B-01 2 167055493 167055493 G A SCN9A Missense_Mutation p.R1875W 0.37 tolerated(0.15) probably_damaging(1) TCGA-TM-A84B-01 2 179485844 179485844 G A TTN Missense_Mutation p.H15201Y 0.53 TCGA-TM-A84B-01 2 191865866 191865866 G A STAT1 Silent p.S132S 0.42 TCGA-TM-A84B-01 2 201846441 201846441 C T FAM126B Missense_Mutation p.R382H 0.44 deleterious(0.03) benign(0.006) TCGA-TM-A84B-01 2 242002232 242002232 C T SNED1 Missense_Mutation p.P761L 0.25 deleterious(0.01) probably_damaging(0.957) TCGA-TM-A84B-01 2 67631743 67631743 C T ETAA1 Silent p.S643S 0.40 TCGA-TM-A84B-01 2 89986862 89986862 G A IGKV2D-29 Missense_Mutation p.S48N 0.44 deleterious(0.04) benign(0.119) TCGA-TM-A84B-01 4 186066341 186066341 G A SLC25A4 Missense_Mutation p.V179I 0.44 tolerated(0.15) probably_damaging(0.925) TCGA-TM-A84B-01 4 70465099 70465099 C T UGT2A1 Silent p.T453T 0.41 TCGA-TM-A84B-01 5 140182557 140182557 C T PCDHA3 Missense_Mutation p.A592V 0.49 deleterious_low_confidence(0.01) benign(0.188) TCGA-TM-A84B-01 6 110567272 110567274 TTG - METTL24 In_Frame_Del p.Q326del 0.12 TCGA-TM-A84B-01 7 1275471 1275471 T C UNCX Missense_Mutation p.W152R 0.35 deleterious(0) probably_damaging(1) TCGA-TM-A84B-01 7 150883516 150883516 G A ASB10 Missense_Mutation p.R183C 0.44 tolerated(0.12) benign(0.022) TCGA-TM-A84B-01 7 17379426 17379426 C T AHR Silent p.F659F 0.31 TCGA-TM-A84B-01 7 43477672 43477672 G A HECW1 Missense_Mutation p.R291H 0.32 deleterious(0) probably_damaging(1) TCGA-TM-A84B-01 7 75894112 75894112 A T SRRM3 Missense_Mutation p.E235V 0.42 deleterious(0) unknown(0) TCGA-TM-A84B-01 8 37693223 37693223 G A GPR124 Missense_Mutation p.R662H 0.36 tolerated(0.09) benign(0.055) TCGA-TM-A84B-01 8 52733212 52733212 A G PCMTD1 Missense_Mutation p.F258S 0.05 tolerated(0.43) benign(0.001) TCGA-TM-A84B-01 9 13108990 13108990 C A MPDZ Missense_Mutation p.G1975V 0.54 deleterious(0) probably_damaging(0.999) TCGA-TM-A84B-01 9 140110110 140110110 G A NDOR1 Splice_Site p.X430_splice 0.54 TCGA-TM-A84C-01 11 118531331 118531331 C A TREH Missense_Mutation p.R340L 0.15 deleterious(0.01) benign(0.445) TCGA-TM-A84C-01 11 219035 219035 G C SIRT3 Missense_Mutation p.P326A 0.22 deleterious(0) benign(0.263) TCGA-TM-A84C-01 11 48134355 48134355 A G PTPRJ Missense_Mutation p.I58V 0.45 tolerated_low_confidence(0.96) benign(0) TCGA-TM-A84C-01 11 63070001 63070001 C T SLC22A10 Missense_Mutation p.T424M 0.37 tolerated(0.2) benign(0.105) TCGA-TM-A84C-01 15 41865222 41865222 T G TYRO3 Missense_Mutation p.I633S 0.26 deleterious(0) benign(0.371) TCGA-TM-A84C-01 17 29508796 29508797 - A NF1 Frame_Shift_Ins p.M242Nfs*3 0.19 TCGA-TM-A84C-01 17 29665157 29665157 G A NF1 Silent p.K2273K 0.41 TCGA-TM-A84C-01 17 58734108 58734108 A G PPM1D Missense_Mutation p.D389G 0.34 deleterious(0.01) benign(0.367) TCGA-TM-A84C-01 19 14854471 14854471 T C EMR2 Missense_Mutation p.Q770R 0.05 deleterious(0) probably_damaging(0.999) TCGA-TM-A84C-01 19 58491114 58491114 T A ZNF606 Missense_Mutation p.T312S 0.41 tolerated(0.09) benign(0.13) TCGA-TM-A84C-01 1 200960121 200960121 G C KIF21B Missense_Mutation p.R871G 0.39 tolerated(0.05) possibly_damaging(0.758) TCGA-TM-A84C-01 1 212120037 212120037 C T INTS7 Missense_Mutation p.C776Y 0.40 tolerated(0.09) probably_damaging(0.964) TCGA-TM-A84C-01 1 226252135 226252135 A T H3F3A Missense_Mutation p.K28M 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.527) TCGA-TM-A84C-01 1 248004826 248004826 C T OR11L1 Missense_Mutation p.A125T 0.09 deleterious(0) probably_damaging(0.954) TCGA-TM-A84C-01 20 10622217 10622217 C T JAG1 Missense_Mutation p.C936Y 0.43 deleterious(0) probably_damaging(0.998) TCGA-TM-A84C-01 3 48594202 48594202 G A PFKFB4 Silent p.S3S 0.20 TCGA-TM-A84C-01 4 85658466 85658466 T C WDFY3 Missense_Mutation p.S2210G 0.40 tolerated(0.31) benign(0.379) TCGA-TM-A84C-01 6 152501297 152501297 C G SYNE1 Missense_Mutation p.E7812Q 0.36 probably_damaging(0.999) TCGA-TM-A84C-01 8 121468835 121468835 A G MTBP Silent p.V224V 0.47 TCGA-TM-A84C-01 8 65494496 65494496 A G BHLHE22 3'UTR 0.38 TCGA-TM-A84F-01 12 89916698 89916698 G T GALNT4 Missense_Mutation p.H543Q 0.10 tolerated(0.77) benign(0.01) TCGA-TM-A84F-01 13 28367943 28367944 - T GSX1 Frame_Shift_Ins p.A219Cfs*25 0.32 TCGA-TM-A84F-01 15 45397878 45397878 C T DUOX2 Missense_Mutation p.R766H 0.36 tolerated(0.62) benign(0.003) TCGA-TM-A84F-01 15 57524624 57524625 - C TCF12 Frame_Shift_Ins p.S276Efs*62 0.25 TCGA-TM-A84F-01 15 63933734 63933734 G C HERC1 Missense_Mutation p.P3848A 0.37 probably_damaging(0.997) TCGA-TM-A84F-01 15 91016190 91016190 G A IQGAP1 Missense_Mutation p.R766Q 0.32 tolerated(0.57) benign(0.005) TCGA-TM-A84F-01 17 37580057 37580059 GAG - MED1 In_Frame_Del p.S290del 0.23 TCGA-TM-A84F-01 17 7577139 7577139 G A TP53 Missense_Mutation p.R267W 0.42 tolerated(0.05) possibly_damaging(0.728) TCGA-TM-A84F-01 17 7577532 7577532 G C TP53 Missense_Mutation p.P250R 0.08 deleterious(0) probably_damaging(1) TCGA-TM-A84F-01 17 8215743 8215743 C T ARHGEF15 Missense_Mutation p.T129M 0.64 deleterious_low_confidence(0.04) benign(0) TCGA-TM-A84F-01 19 35449165 35449165 G A ZNF792 Missense_Mutation p.R532W 0.29 deleterious(0) probably_damaging(0.994) TCGA-TM-A84F-01 1 19468015 19468015 C G UBR4 Missense_Mutation p.E2772Q 0.17 possibly_damaging(0.728) TCGA-TM-A84F-01 1 62676147 62676147 T C L1TD1 Silent p.D567D 0.28 TCGA-TM-A84F-01 20 33586196 33586196 G A MYH7B Silent p.T1324T 0.31 TCGA-TM-A84F-01 20 62854706 62854707 - C MYT1 Frame_Shift_Ins p.L842Pfs*9 0.24 TCGA-TM-A84F-01 2 179438184 179438184 C T TTN Silent p.P24225P 0.36 TCGA-TM-A84F-01 2 180835797 180835797 C T CWC22 Missense_Mutation p.E271K 0.25 deleterious(0) probably_damaging(0.926) TCGA-TM-A84F-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A84F-01 3 77638042 77638042 T C ROBO2 Missense_Mutation p.Y897H 0.10 deleterious(0) benign(0.403) TCGA-TM-A84F-01 4 88766136 88766136 A - MEPE Frame_Shift_Del p.N41Tfs*14 0.20 TCGA-TM-A84F-01 7 2689592 2689592 A G TTYH3 Missense_Mutation p.M281V 0.24 tolerated(0.73) benign(0.014) TCGA-TM-A84G-01 10 27688135 27688135 A G PTCHD3 Silent p.S464S 0.38 TCGA-TM-A84G-01 12 42860025 42860025 T C PRICKLE1 Missense_Mutation p.E249G 0.90 deleterious(0) probably_damaging(0.928) TCGA-TM-A84G-01 12 48596567 48596567 C T OR10AD1 Missense_Mutation p.R170H 0.28 tolerated(0.05) benign(0.038) TCGA-TM-A84G-01 12 53084812 53084812 A G KRT77 3'UTR 0.40 TCGA-TM-A84G-01 12 9020559 9020559 C T A2ML1 Missense_Mutation p.S1280L 0.43 tolerated(0.34) benign(0.028) TCGA-TM-A84G-01 13 32367130 32367131 - A RXFP2 Frame_Shift_Ins p.N565Kfs*15 0.23 TCGA-TM-A84G-01 15 101589864 101589864 C T LRRK1 Silent p.D1105D 0.49 TCGA-TM-A84G-01 15 31234326 31234326 T C FAN1 3'UTR 0.42 TCGA-TM-A84G-01 16 1270872 1270872 G A CACNA1H Missense_Mutation p.V2314I 0.43 deleterious_low_confidence(0.04) benign(0.001) TCGA-TM-A84G-01 16 1536429 1536429 G A PTX4 Silent p.Y311Y 0.50 TCGA-TM-A84G-01 16 85942758 85942758 G T IRF8 Missense_Mutation p.V113F 0.43 deleterious(0) probably_damaging(1) TCGA-TM-A84G-01 1 151677561 151677561 T C CELF3 Missense_Mutation p.K452E 0.43 deleterious(0) probably_damaging(0.998) TCGA-TM-A84G-01 1 78428491 78428491 T - FUBP1 Frame_Shift_Del p.I436Mfs*8 0.44 TCGA-TM-A84G-01 20 13071766 13071766 G T SPTLC3 Missense_Mutation p.V215L 0.50 tolerated(0.11) benign(0.042) TCGA-TM-A84G-01 20 13260457 13260457 C T ISM1 Silent p.D185D 0.29 TCGA-TM-A84G-01 21 45651187 45651187 G A ICOSLG Nonsense_Mutation p.R280* 0.45 TCGA-TM-A84G-01 22 19839875 19839875 G T C22orf29 5'UTR 0.58 TCGA-TM-A84G-01 2 103063658 103063658 A G IL18RAP Missense_Mutation p.T401A 0.38 deleterious(0.01) possibly_damaging(0.847) TCGA-TM-A84G-01 2 197521413 197521413 G A CCDC150 Missense_Mutation p.S78N 0.42 deleterious(0.01) benign(0.393) TCGA-TM-A84G-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A84G-01 2 85852729 85852729 G A USP39 Missense_Mutation p.R213Q 0.14 tolerated(0.08) probably_damaging(0.928) TCGA-TM-A84G-01 3 64148708 64148708 G A PRICKLE2 Missense_Mutation p.P81L 0.50 deleterious(0) probably_damaging(0.998) TCGA-TM-A84G-01 4 104061011 104061013 TCC - CENPE In_Frame_Del p.R2046del 0.39 TCGA-TM-A84G-01 4 110932525 110932525 G A EGF Missense_Mutation p.E1180K 0.44 deleterious_low_confidence(0.04) benign(0.002) TCGA-TM-A84G-01 4 47428059 47428059 A G GABRB1 3'UTR 0.06 TCGA-TM-A84G-01 5 140593645 140593645 T G PCDHB13 5'UTR 0.51 TCGA-TM-A84G-01 5 19520806 19520806 T C CDH18 Missense_Mutation p.E491G 0.47 tolerated(0.38) benign(0.033) TCGA-TM-A84G-01 6 117892068 117892068 A T GOPC Silent p.V289V 0.18 TCGA-TM-A84G-01 6 34825143 34825143 C T UHRF1BP1 Missense_Mutation p.T490I 0.20 deleterious(0) benign(0.318) TCGA-TM-A84G-01 6 83075811 83075811 G A TPBG Missense_Mutation p.R378H 0.53 deleterious(0) probably_damaging(0.998) TCGA-TM-A84G-01 7 142428774 142428774 A G TRBV28 Missense_Mutation p.D45G 0.50 deleterious(0.02) possibly_damaging(0.543) TCGA-TM-A84G-01 7 24856226 24856227 - A OSBPL3 Intron 0.30 TCGA-TM-A84G-01 8 133911126 133911126 A G TG Missense_Mutation p.K1101E 0.36 tolerated(1) benign(0.005) TCGA-TM-A84G-01 9 139401808 139401808 A T NOTCH1 Missense_Mutation p.C1198S 0.88 deleterious(0) probably_damaging(0.976) TCGA-TM-A84G-01 9 84609657 84609657 T C SPATA31D1 Silent p.D1424D 0.41 TCGA-TM-A84G-01 X 117895252 117895252 C T IL13RA1 Silent p.Y276Y 0.38 TCGA-TM-A84G-01 X 135312700 135312700 G A MAP7D3 Nonsense_Mutation p.Q532* 0.44 TCGA-TM-A84G-01 X 153051789 153051789 G A IDH3G Intron 0.23 TCGA-TM-A84G-01 X 16773205 16773205 T A SYAP1 Nonsense_Mutation p.L238* 0.35 TCGA-TM-A84G-01 X 26212856 26212856 A T MAGEB6 Missense_Mutation p.N298I 0.39 deleterious(0.01) benign(0.404) TCGA-TM-A84G-01 X 54275530 54275530 G T WNK3 Missense_Mutation p.P1084Q 0.44 deleterious(0.01) possibly_damaging(0.526) TCGA-TM-A84H-01 10 129904148 129904148 G C MKI67 Missense_Mutation p.P1986A 0.03 tolerated(0.79) benign(0.066) TCGA-TM-A84H-01 10 35322128 35322128 T G CUL2 Missense_Mutation p.N378T 0.24 tolerated(0.4) possibly_damaging(0.453) TCGA-TM-A84H-01 10 73567468 73567468 T C CDH23 Missense_Mutation p.V595A 0.33 tolerated(0.49) benign(0.017) TCGA-TM-A84H-01 10 82280594 82280594 G T TSPAN14 3'UTR 0.06 TCGA-TM-A84H-01 11 5906365 5906365 T C OR52E4 Silent p.Y281Y 0.43 TCGA-TM-A84H-01 12 130649165 130649165 G A FZD10 Missense_Mutation p.A560T 0.28 tolerated_low_confidence(0.37) benign(0.002) TCGA-TM-A84H-01 12 52793851 52793851 C T KRT82 Missense_Mutation p.G287D 0.05 tolerated(0.23) benign(0.016) TCGA-TM-A84H-01 12 992630 992630 A G WNK1 Missense_Mutation p.K1187E 0.05 deleterious(0.01) probably_damaging(0.935) TCGA-TM-A84H-01 13 114531573 114531573 G C GAS6 Missense_Mutation p.L419V 0.31 tolerated(0.2) benign(0.051) TCGA-TM-A84H-01 14 73464558 73464558 T C ZFYVE1 Missense_Mutation p.I317V 0.37 tolerated(0.41) benign(0.054) TCGA-TM-A84H-01 14 74824505 74824505 C T VRTN Missense_Mutation p.P340L 0.44 deleterious(0) probably_damaging(0.998) TCGA-TM-A84H-01 14 94503790 94503790 C T OTUB2 Missense_Mutation p.P23L 0.51 tolerated(0.22) benign(0.156) TCGA-TM-A84H-01 15 41870616 41870616 G A TYRO3 3'UTR 0.44 TCGA-TM-A84H-01 17 17698028 17698028 C T RAI1 Missense_Mutation p.A589V 0.23 deleterious(0.01) benign(0.148) TCGA-TM-A84H-01 17 7578418 7578418 T - TP53 Frame_Shift_Del p.E171Gfs*3 0.51 TCGA-TM-A84H-01 17 76464785 76464785 G A DNAH17 Nonsense_Mutation p.R2884* 0.19 TCGA-TM-A84H-01 18 29126227 29126227 A T DSG2 Missense_Mutation p.S960C 0.37 deleterious(0.01) possibly_damaging(0.625) TCGA-TM-A84H-01 19 11138480 11138480 C T SMARCA4 Missense_Mutation p.S1079L 0.50 probably_damaging(0.997) TCGA-TM-A84H-01 19 22941413 22941413 G T ZNF99 Missense_Mutation p.A433D 0.46 deleterious(0.03) possibly_damaging(0.791) TCGA-TM-A84H-01 19 52091455 52091455 T C ZNF175 Missense_Mutation p.F624S 0.23 deleterious(0) possibly_damaging(0.754) TCGA-TM-A84H-01 19 9069138 9069138 T G MUC16 Missense_Mutation p.D6103A 0.11 unknown(0) TCGA-TM-A84H-01 19 9073357 9073357 C G MUC16 Missense_Mutation p.D4697H 0.05 unknown(0) TCGA-TM-A84H-01 1 12855741 12855741 G A PRAMEF1 Missense_Mutation p.G341R 0.28 tolerated(0.31) benign(0.021) TCGA-TM-A84H-01 1 169698443 169698443 A G SELE Missense_Mutation p.F325S 0.16 deleterious(0) possibly_damaging(0.547) TCGA-TM-A84H-01 1 171302046 171302046 G A FMO4 Missense_Mutation p.G276R 0.51 tolerated(0.62) benign(0.119) TCGA-TM-A84H-01 1 204228468 204228468 C T PLEKHA6 Missense_Mutation p.A309T 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-TM-A84H-01 1 206653790 206653790 G A IKBKE Missense_Mutation p.M447I 0.36 tolerated(1) benign(0) TCGA-TM-A84H-01 1 7826645 7826645 G A CAMTA1 3'UTR 0.09 TCGA-TM-A84H-01 1 85559315 85559315 G C WDR63 Missense_Mutation p.W344C 0.15 deleterious(0) probably_damaging(1) TCGA-TM-A84H-01 20 50158922 50158922 C G NFATC2 Missense_Mutation p.L39F 0.23 tolerated(0.16) benign(0.001) TCGA-TM-A84H-01 20 62839165 62839168 GCCA - MYT1 Frame_Shift_Del p.S207Rfs*48 0.13 TCGA-TM-A84H-01 20 62896749 62896749 G - PCMTD2 Frame_Shift_Del p.G184Efs*12 0.13 TCGA-TM-A84H-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A84H-01 2 219894928 219894928 T C CCDC108 Silent p.V388V 0.29 TCGA-TM-A84H-01 2 233756167 233756167 G C NGEF Missense_Mutation p.I391M 0.47 tolerated(0.27) benign(0.373) TCGA-TM-A84H-01 3 9911660 9911660 C G CIDEC Missense_Mutation p.D164H 0.39 deleterious(0) probably_damaging(0.996) TCGA-TM-A84H-01 4 156632083 156632083 T C GUCY1A3 Missense_Mutation p.S256P 0.05 tolerated(0.15) possibly_damaging(0.806) TCGA-TM-A84H-01 4 71657033 71657033 C T RUFY3 Intron 0.46 TCGA-TM-A84H-01 5 134782426 134782426 G A C5orf20 Missense_Mutation p.R125W 0.37 tolerated_low_confidence(0.05) possibly_damaging(0.835) TCGA-TM-A84H-01 5 79034604 79034604 C T CMYA5 Missense_Mutation p.A3339V 0.39 possibly_damaging(0.781) TCGA-TM-A84H-01 6 119238864 119238864 G A MCM9 Missense_Mutation p.R256C 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-TM-A84H-01 7 20198631 20198635 TTCTC - MACC1 Frame_Shift_Del p.G450Efs*5 0.53 TCGA-TM-A84H-01 7 38805189 38805189 T C VPS41 Silent p.G440G 0.13 TCGA-TM-A84H-01 8 113988234 113988234 C T CSMD3 Missense_Mutation p.E392K 0.67 tolerated(0.61) benign(0.001) TCGA-TM-A84H-01 8 26237207 26237207 A G BNIP3L 5'Flank 0.17 TCGA-TM-A84H-01 X 102004758 102004758 C T BHLHB9 Missense_Mutation p.P279S 0.44 tolerated(0.13) benign(0.035) TCGA-TM-A84H-01 X 125299816 125299816 G A DCAF12L2 Missense_Mutation p.A31V 0.39 tolerated(0.23) benign(0.003) TCGA-TM-A84H-01 X 154157391 154157391 G C F8 Missense_Mutation p.N1558K 0.20 tolerated(0.28) benign(0.004) TCGA-TM-A84H-01 X 32459327 32459327 G A DMD Silent p.G1297G 0.67 TCGA-TM-A84H-01 X 70824520 70824520 A G ACRC Missense_Mutation p.T465A 0.38 unknown(0) TCGA-TM-A84H-01 X 76875920 76875920 G A ATRX Nonsense_Mutation p.R1739* 0.51 TCGA-TM-A84I-01 11 64699330 64699330 C T PPP2R5B Missense_Mutation p.P369L 0.17 deleterious(0) benign(0.431) TCGA-TM-A84I-01 12 130919378 130919378 G A RIMBP2 Silent p.Y701Y 0.49 TCGA-TM-A84I-01 12 57552234 57552234 C T LRP1 Silent p.I537I 0.39 TCGA-TM-A84I-01 12 57552342 57552342 C G LRP1 Missense_Mutation p.I573M 0.52 possibly_damaging(0.472) TCGA-TM-A84I-01 12 6457372 6457372 G A SCNN1A Silent p.F618F 0.32 TCGA-TM-A84I-01 12 7522118 7522118 C A CD163L1 Missense_Mutation p.A1292S 0.04 tolerated(0.05) probably_damaging(1) TCGA-TM-A84I-01 14 62014587 62014587 C T RP11-47I22.4 Missense_Mutation p.P135S 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-TM-A84I-01 15 64449114 64449114 A - PPIB Intron 0.10 TCGA-TM-A84I-01 16 14340397 14340397 T C MKL2 Missense_Mutation p.I427T 0.16 deleterious(0) probably_damaging(0.999) TCGA-TM-A84I-01 17 4540428 4540428 G A ALOX15 Silent p.L311L 0.12 TCGA-TM-A84I-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.56 deleterious(0) probably_damaging(1) TCGA-TM-A84I-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.46 tolerated(0.11) benign(0.308) TCGA-TM-A84I-01 18 33243711 33243711 A G GALNT1 Missense_Mutation p.M87V 0.20 tolerated(0.34) benign(0.004) TCGA-TM-A84I-01 19 19313023 19313023 G C NR2C2AP Intron 0.19 TCGA-TM-A84I-01 19 41601812 41601812 C A CYP2A13 Missense_Mutation p.P484Q 0.19 deleterious(0) probably_damaging(1) TCGA-TM-A84I-01 19 55220476 55220476 A G AC098784.2 3'Flank 0.38 TCGA-TM-A84I-01 1 153391722 153391726 CATAG - S100A7A Frame_Shift_Del p.I82Rfs*50 0.36 TCGA-TM-A84I-01 1 168698267 168698267 T C DPT Missense_Mutation p.Q49R 0.06 deleterious(0.01) possibly_damaging(0.888) TCGA-TM-A84I-01 1 209786251 209786251 T C CAMK1G 3'UTR 0.11 TCGA-TM-A84I-01 1 241757560 241757560 T C OPN3 3'UTR 0.32 TCGA-TM-A84I-01 20 44184381 44184381 A T WFDC8 Missense_Mutation p.F135Y 0.05 deleterious(0) probably_damaging(1) TCGA-TM-A84I-01 22 30890140 30890140 G A SEC14L4 Nonsense_Mutation p.R193* 0.06 TCGA-TM-A84I-01 22 38227984 38227984 A G ANKRD54 Missense_Mutation p.L290P 0.19 deleterious(0) probably_damaging(0.996) TCGA-TM-A84I-01 2 111559245 111559245 C A ACOXL Missense_Mutation p.D188E 0.21 deleterious(0) probably_damaging(0.999) TCGA-TM-A84I-01 2 162903987 162903987 C T DPP4 Missense_Mutation p.R40H 0.07 deleterious(0.02) possibly_damaging(0.827) TCGA-TM-A84I-01 2 170127551 170127551 G T LRP2 Missense_Mutation p.T728N 0.19 benign(0.005) TCGA-TM-A84I-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A84I-01 3 9412772 9412772 T C THUMPD3 Missense_Mutation p.L120S 0.24 deleterious(0) possibly_damaging(0.821) TCGA-TM-A84I-01 4 4199680 4199680 C T OTOP1 Missense_Mutation p.R294H 0.11 tolerated(0.06) probably_damaging(0.931) TCGA-TM-A84I-01 4 74442136 74442136 A G RASSF6 Missense_Mutation p.I342T 0.05 tolerated(0.46) benign(0.004) TCGA-TM-A84I-01 5 148407349 148407349 T C SH3TC2 Missense_Mutation p.H649R 0.66 tolerated(0.19) benign(0.122) TCGA-TM-A84I-01 5 843744 843744 C A ZDHHC11 Missense_Mutation p.G200V 0.14 tolerated(0.29) benign(0.01) TCGA-TM-A84I-01 6 17675524 17675524 T C NUP153 Missense_Mutation p.Q220R 0.49 deleterious(0) possibly_damaging(0.809) TCGA-TM-A84I-01 6 27833185 27833185 G C HIST1H2AL Missense_Mutation p.R18P 0.47 deleterious_low_confidence(0) unknown(0) TCGA-TM-A84I-01 6 32036883 32036883 G A TNXB Missense_Mutation p.T1873M 0.19 possibly_damaging(0.9) TCGA-TM-A84I-01 7 143748010 143748010 T A OR2A5 Missense_Mutation p.H172Q 0.19 tolerated(1) benign(0.014) TCGA-TM-A84I-01 7 150747946 150747946 C A ASIC3 Missense_Mutation p.S305R 0.27 tolerated(0.26) benign(0.015) TCGA-TM-A84I-01 7 158536410 158536410 A G ESYT2 Intron 0.32 TCGA-TM-A84I-01 8 100533211 100533211 G A VPS13B Missense_Mutation p.R1598K 0.13 deleterious(0) possibly_damaging(0.745) TCGA-TM-A84I-01 9 27157891 27157891 G A TEK Missense_Mutation p.E39K 0.18 tolerated(0.07) possibly_damaging(0.885) TCGA-TM-A84I-01 9 33385821 33385821 G A AQP7 Missense_Mutation p.T190M 0.31 tolerated(0.23) benign(0.094) TCGA-TM-A84I-01 9 35616134 35616134 G A CD72 Missense_Mutation p.A165V 0.24 tolerated(0.06) benign(0.057) TCGA-TM-A84I-01 X 102339304 102339304 G A NXF3 Missense_Mutation p.P106L 0.35 deleterious(0.02) benign(0.126) TCGA-TM-A84I-01 X 76920170 76920173 TTCT - ATRX Frame_Shift_Del p.R1302Lfs*43 0.97 TCGA-TM-A84I-01 X 84362924 84362924 G C SATL1 Missense_Mutation p.P351A 1.00 tolerated(0.78) possibly_damaging(0.725) TCGA-TM-A84J-01 10 112262511 112262512 GA - DUSP5 Frame_Shift_Del p.E138Vfs*14 0.39 TCGA-TM-A84J-01 10 12238313 12238313 C G CDC123 Missense_Mutation p.I23M 0.10 deleterious(0) possibly_damaging(0.89) TCGA-TM-A84J-01 10 26482183 26482183 C T MYO3A Silent p.P1496P 0.25 TCGA-TM-A84J-01 10 69571296 69571296 C G DNAJC12 Missense_Mutation p.D95H 0.27 deleterious(0.01) possibly_damaging(0.847) TCGA-TM-A84J-01 11 108158380 108158382 GAC - ATM In_Frame_Del p.T1350del 0.94 TCGA-TM-A84J-01 11 134080162 134080162 A C NCAPD3 Splice_Site p.X189_splice 0.33 TCGA-TM-A84J-01 11 95512069 95512069 T C FAM76B Missense_Mutation p.I249V 0.31 tolerated(0.18) benign(0.442) TCGA-TM-A84J-01 12 103700000 103700000 C T C12orf42 Missense_Mutation p.R128H 0.31 tolerated(0.55) benign(0) TCGA-TM-A84J-01 12 1943492 1943492 C T LRTM2 Missense_Mutation p.R240W 0.09 deleterious(0) probably_damaging(0.984) TCGA-TM-A84J-01 12 50349300 50349300 C T AQP2 Missense_Mutation p.P242L 0.38 tolerated(0.11) probably_damaging(0.999) TCGA-TM-A84J-01 12 55357560 55357560 C T TESPA1 Silent p.R207R 0.42 TCGA-TM-A84J-01 14 106641975 106641975 A G IGHV1-18 Missense_Mutation p.L8P 0.08 deleterious(0.01) probably_damaging(0.979) TCGA-TM-A84J-01 14 90509453 90509453 C T TDP1 Missense_Mutation p.P598L 0.21 deleterious(0) probably_damaging(1) TCGA-TM-A84J-01 15 65960387 65960387 G C DENND4A Missense_Mutation p.S1620C 0.58 deleterious(0) benign(0.438) TCGA-TM-A84J-01 16 2338249 2338249 C A ABCA3 Missense_Mutation p.A928S 0.29 deleterious(0.02) benign(0.065) TCGA-TM-A84J-01 16 28846701 28846701 C T ATXN2L Missense_Mutation p.A889V 0.08 deleterious(0.03) benign(0.124) TCGA-TM-A84J-01 17 11835397 11835397 C T DNAH9 Missense_Mutation p.H4058Y 0.21 probably_damaging(0.999) TCGA-TM-A84J-01 17 3491593 3491593 G A SHPK Silent p.T371T 0.62 TCGA-TM-A84J-01 17 37118156 37118156 G A FBXO47 Missense_Mutation p.A109V 0.50 tolerated(0.5) benign(0.007) TCGA-TM-A84J-01 17 48447454 48447454 T C MRPL27 Missense_Mutation p.Y60C 0.48 deleterious(0.02) probably_damaging(0.959) TCGA-TM-A84J-01 17 61483616 61483616 C T TANC2 Silent p.T1115T 0.49 TCGA-TM-A84J-01 17 7578458 7578458 G T TP53 Missense_Mutation p.R158S 0.91 deleterious(0) probably_damaging(0.991) TCGA-TM-A84J-01 17 79872257 79872257 C T SIRT7 Silent p.G243G 0.42 TCGA-TM-A84J-01 19 1041546 1041546 T C ABCA7 Missense_Mutation p.L35P 0.18 deleterious(0) probably_damaging(0.999) TCGA-TM-A84J-01 19 2129435 2129435 T C AP3D1 Missense_Mutation p.N205S 0.30 deleterious(0.03) possibly_damaging(0.872) TCGA-TM-A84J-01 19 50099877 50099877 A G PRR12 Missense_Mutation p.K762R 0.39 possibly_damaging(0.486) TCGA-TM-A84J-01 19 54198493 54198493 G A MIR519B RNA 0.55 TCGA-TM-A84J-01 19 58232671 58232671 G A ZNF671 Silent p.A261A 0.18 TCGA-TM-A84J-01 1 115130509 115130509 A G DENND2C Silent p.H832H 0.19 TCGA-TM-A84J-01 1 155004069 155004069 C T DCST2 Silent p.A240A 0.17 TCGA-TM-A84J-01 1 155307393 155307393 G - ASH1L 3'UTR 0.29 TCGA-TM-A84J-01 1 247323000 247323000 A G ZNF124 Missense_Mutation p.L49P 0.21 deleterious(0) probably_damaging(0.943) TCGA-TM-A84J-01 1 248813322 248813322 G C OR2T27 Silent p.L288L 0.33 TCGA-TM-A84J-01 1 2519968 2519968 G A FAM213B Intron 0.44 TCGA-TM-A84J-01 1 46179946 46179946 T C IPP Missense_Mutation p.H501R 0.46 tolerated(0.52) benign(0.001) TCGA-TM-A84J-01 1 47608994 47608994 C T CYP4A22 Silent p.H188H 0.17 TCGA-TM-A84J-01 1 82421687 82421687 G T LPHN2 Missense_Mutation p.V637F 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-TM-A84J-01 22 25747709 25747709 C T LRP5L 3'UTR 0.29 TCGA-TM-A84J-01 22 36116679 36116679 G A APOL5 Silent p.G40G 0.48 TCGA-TM-A84J-01 2 101654920 101654920 T C TBC1D8 Intron 0.23 TCGA-TM-A84J-01 2 170031819 170031819 C T LRP2 Missense_Mutation p.R3551H 0.51 possibly_damaging(0.868) TCGA-TM-A84J-01 2 220108252 220108252 G A GLB1L Missense_Mutation p.P15L 0.26 tolerated(0.66) possibly_damaging(0.726) TCGA-TM-A84J-01 2 65299194 65299194 C T CEP68 Missense_Mutation p.R322C 0.21 deleterious(0.01) benign(0.019) TCGA-TM-A84J-01 2 85780433 85780433 G A GGCX Silent p.R359R 0.13 TCGA-TM-A84J-01 3 52525405 52525405 G T NISCH Silent p.R1260R 0.17 TCGA-TM-A84J-01 3 65376868 65376868 G T MAGI1 Missense_Mutation p.P789T 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-TM-A84J-01 4 155180800 155180800 G A DCHS2 Missense_Mutation p.A1774V 0.23 tolerated(0.06) benign(0.091) TCGA-TM-A84J-01 4 38893436 38893436 G A FAM114A1 Missense_Mutation p.A141T 0.40 deleterious(0) probably_damaging(0.998) TCGA-TM-A84J-01 5 140307730 140307730 C T PCDHAC1 Missense_Mutation p.S418L 0.28 tolerated(0.25) benign(0.064) TCGA-TM-A84J-01 5 149915331 149915331 G A NDST1 Missense_Mutation p.V441M 0.34 tolerated(0.12) benign(0.01) TCGA-TM-A84J-01 5 167675300 167675300 G A TENM2 Silent p.P2452P 0.15 TCGA-TM-A84J-01 6 56480235 56480235 T C DST Intron 0.55 TCGA-TM-A84J-01 7 142111483 142111483 C T TRBV5-7 Missense_Mutation p.G85S 0.47 deleterious(0.04) benign(0.31) TCGA-TM-A84J-01 7 2752024 2752024 C T AMZ1 Missense_Mutation p.P337S 0.28 tolerated(0.51) benign(0.001) TCGA-TM-A84J-01 7 97482450 97482450 T C ASNS Silent p.P466P 0.17 TCGA-TM-A84J-01 8 82392665 82392665 A G FABP4 Missense_Mutation p.V81A 0.19 tolerated(0.11) benign(0.08) TCGA-TM-A84L-01 12 21392085 21392086 - T SLCO1B1 Frame_Shift_Ins p.S682Ffs*6 0.21 TCGA-TM-A84L-01 16 53504686 53504686 G A RBL2 Missense_Mutation p.R852Q 0.19 tolerated(0.11) benign(0.398) TCGA-TM-A84L-01 17 45994066 45994066 T C SP2 Missense_Mutation p.V210A 0.38 deleterious(0.01) benign(0.011) TCGA-TM-A84L-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.35 deleterious(0.02) probably_damaging(0.922) TCGA-TM-A84L-01 17 7578250 7578250 T - TP53 Frame_Shift_Del p.N200Ifs*47 0.21 TCGA-TM-A84L-01 17 79620303 79620303 C G PDE6G Silent p.R11R 0.32 TCGA-TM-A84L-01 18 29099814 29099814 T G DSG2 Missense_Mutation p.L44V 0.28 tolerated(0.11) possibly_damaging(0.524) TCGA-TM-A84L-01 1 215848559 215848559 G T USH2A Missense_Mutation p.P4232T 0.13 probably_damaging(1) TCGA-TM-A84L-01 1 26629321 26629321 C T UBXN11 Silent p.S18S 0.49 TCGA-TM-A84L-01 1 32682594 32682594 C T TMEM234 Intron 0.38 TCGA-TM-A84L-01 22 39448228 39448228 G A APOBEC3F Silent p.L291L 0.30 TCGA-TM-A84L-01 2 17697556 17697556 C T RAD51AP2 Silent p.Q709Q 0.04 TCGA-TM-A84L-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A84L-01 3 45988956 45988956 T C CXCR6 Missense_Mutation p.F328S 0.23 tolerated(0.49) benign(0) TCGA-TM-A84L-01 3 56675529 56675529 T C FAM208A Missense_Mutation p.K823E 0.36 tolerated(0.69) benign(0.023) TCGA-TM-A84L-01 4 128629783 128629783 G A INTU Missense_Mutation p.D777N 0.31 tolerated(0.92) benign(0.005) TCGA-TM-A84L-01 4 25750034 25750034 T C SEL1L3 3'UTR 0.55 TCGA-TM-A84L-01 4 71659525 71659525 G A RUFY3 Missense_Mutation p.R454H 0.54 deleterious(0.04) probably_damaging(0.972) TCGA-TM-A84L-01 5 72419433 72419433 G A TMEM171 Missense_Mutation p.R78H 0.37 deleterious(0) probably_damaging(0.983) TCGA-TM-A84L-01 6 11005622 11005622 C T ELOVL2 Missense_Mutation p.A80T 0.25 tolerated(0.05) benign(0.118) TCGA-TM-A84L-01 6 2679602 2679602 G C MYLK4 Missense_Mutation p.P267A 0.07 deleterious(0.03) possibly_damaging(0.887) TCGA-TM-A84L-01 6 42210985 42210985 C T TRERF1 Splice_Site p.X953_splice 0.29 TCGA-TM-A84L-01 7 20721141 20721141 G A ABCB5 Missense_Mutation p.R574Q 0.29 deleterious(0.03) benign(0.263) TCGA-TM-A84L-01 7 77256458 77256458 G A PTPN12 Missense_Mutation p.G488S 0.29 tolerated_low_confidence(0.78) benign(0.022) TCGA-TM-A84L-01 9 125486633 125486633 A G OR1L4 Missense_Mutation p.D122G 0.37 deleterious(0) probably_damaging(0.999) TCGA-TM-A84L-01 X 76938326 76938326 G A ATRX Nonsense_Mutation p.R808* 0.66 TCGA-TM-A84M-01 10 15885222 15885222 C T FAM188A Missense_Mutation p.R75Q 0.35 tolerated(0.08) possibly_damaging(0.836) TCGA-TM-A84M-01 10 26310700 26310700 C T MYO3A Intron 0.50 TCGA-TM-A84M-01 11 57466676 57466676 T C ZDHHC5 Missense_Mutation p.S590P 0.45 tolerated(0.36) benign(0.446) TCGA-TM-A84M-01 11 82924004 82924004 C T ANKRD42 Intron 0.53 TCGA-TM-A84M-01 14 23354539 23354539 C A REM2 Silent p.I170I 0.47 TCGA-TM-A84M-01 15 42363709 42363709 G A PLA2G4D Silent p.A538A 0.43 TCGA-TM-A84M-01 15 90446605 90446605 A G C15orf38-AP3S2 Missense_Mutation p.L172S 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-TM-A84M-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.10 deleterious(0.01) possibly_damaging(0.655) TCGA-TM-A84M-01 17 66873682 66873682 C T ABCA8 Missense_Mutation p.D1353N 0.28 deleterious(0.02) possibly_damaging(0.904) TCGA-TM-A84M-01 17 72341014 72341014 C T KIF19 Missense_Mutation p.R233W 0.20 deleterious(0) probably_damaging(0.997) TCGA-TM-A84M-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.32 deleterious(0) probably_damaging(1) TCGA-TM-A84M-01 19 42791758 42791758 G A CIC Missense_Mutation p.R215Q 0.19 probably_damaging(0.999) TCGA-TM-A84M-01 19 9049228 9049228 C T MUC16 Silent p.A10801A 0.47 TCGA-TM-A84M-01 1 145109584 145109584 G A SEC22B RNA 0.13 TCGA-TM-A84M-01 1 175106074 175106074 C T TNN Missense_Mutation p.S1182F 0.07 deleterious(0) probably_damaging(0.996) TCGA-TM-A84M-01 1 230898421 230898421 T - CAPN9 Frame_Shift_Del p.L142Rfs*4 0.33 TCGA-TM-A84M-01 1 236645924 236645924 G A EDARADD Missense_Mutation p.R208H 0.07 tolerated_low_confidence(0.39) benign(0.003) TCGA-TM-A84M-01 1 27097676 27097676 G A ARID1A Missense_Mutation p.A1089T 0.63 unknown(0) TCGA-TM-A84M-01 1 78432598 78432598 C A FUBP1 Nonsense_Mutation p.E129* 0.81 TCGA-TM-A84M-01 21 41173337 41173337 C T IGSF5 3'UTR 0.47 TCGA-TM-A84M-01 21 43896045 43896045 C A RSPH1 Missense_Mutation p.E280D 0.45 tolerated_low_confidence(0.35) benign(0.011) TCGA-TM-A84M-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A84M-01 2 21237441 21237441 C G APOB Missense_Mutation p.A1241P 0.06 possibly_damaging(0.844) TCGA-TM-A84M-01 3 113514767 113514767 C T ATP6V1A Missense_Mutation p.A424V 0.31 deleterious(0.02) possibly_damaging(0.868) TCGA-TM-A84M-01 3 64527574 64527574 G A ADAMTS9 Missense_Mutation p.H1713Y 0.42 deleterious(0.01) benign(0.125) TCGA-TM-A84M-01 4 113540554 113540554 G A C4orf21 Missense_Mutation p.S215L 0.08 deleterious(0.03) benign(0.04) TCGA-TM-A84M-01 4 170476982 170476982 C T NEK1 Missense_Mutation p.R484H 0.10 tolerated(0.4) benign(0.005) TCGA-TM-A84M-01 4 88583167 88583167 T A DMP1 Missense_Mutation p.D79E 0.52 tolerated(0.13) probably_damaging(0.953) TCGA-TM-A84M-01 5 114462134 114462134 C T TRIM36 3'UTR 0.08 TCGA-TM-A84M-01 5 148989208 148989208 G A ARHGEF37 Silent p.R136R 0.49 TCGA-TM-A84M-01 5 179028901 179028901 G A RUFY1 Silent p.R590R 0.36 TCGA-TM-A84M-01 6 41773595 41773595 A G USP49 Missense_Mutation p.V376A 0.43 deleterious(0) probably_damaging(0.997) TCGA-TM-A84M-01 7 139083362 139083362 A G LUC7L2 Silent p.E124E 0.22 TCGA-TM-A84M-01 7 65439637 65439637 G A GUSB Missense_Mutation p.R374C 0.48 deleterious(0) possibly_damaging(0.887) TCGA-TM-A84M-01 9 73027912 73027912 G A KLF9 Missense_Mutation p.P123L 0.39 tolerated(0.48) benign(0) TCGA-TM-A84M-01 X 53440235 53440235 G A SMC1A Missense_Mutation p.R188C 0.94 deleterious(0.02) benign(0.189) TCGA-TM-A84O-01 10 79581312 79581312 T C DLG5 Missense_Mutation p.N977S 0.17 tolerated(0.21) possibly_damaging(0.817) TCGA-TM-A84O-01 11 49974112 49974112 C T OR4C13 Silent p.T46T 0.38 TCGA-TM-A84O-01 11 57971059 57971059 T C OR1S2 Missense_Mutation p.K199E 0.28 deleterious(0.02) benign(0.05) TCGA-TM-A84O-01 11 58919526 58919526 C T FAM111A Missense_Mutation p.R129C 0.35 tolerated(0.24) benign(0.001) TCGA-TM-A84O-01 12 65847524 65847524 C T MSRB3 Silent p.H110H 0.43 TCGA-TM-A84O-01 12 95694120 95694120 G A VEZT Missense_Mutation p.G671S 0.43 tolerated(0.25) benign(0.007) TCGA-TM-A84O-01 14 57960220 57960220 A G C14orf105 Missense_Mutation p.Y72H 0.45 tolerated(0.46) benign(0.02) TCGA-TM-A84O-01 15 42058595 42058595 A C MGA Missense_Mutation p.D2772A 0.20 deleterious(0.01) benign(0.066) TCGA-TM-A84O-01 15 52668651 52668651 G A MYO5A Silent p.I771I 0.26 TCGA-TM-A84O-01 17 13399643 13399643 C T HS3ST3A1 Silent p.L364L 0.21 TCGA-TM-A84O-01 17 18025715 18025715 C T MYO15A Missense_Mutation p.R1201W 0.32 unknown(0) TCGA-TM-A84O-01 17 47394244 47394244 C T ZNF652 Missense_Mutation p.V282I 0.32 tolerated(0.11) possibly_damaging(0.688) TCGA-TM-A84O-01 19 42798120 42798121 - T CIC Frame_Shift_Ins p.A1360Cfs*2 0.37 TCGA-TM-A84O-01 19 52468457 52468457 G A ZNF350 Silent p.L417L 0.58 TCGA-TM-A84O-01 1 23356963 23356964 - A KDM1A Frame_Shift_Ins p.E119Rfs*7 0.38 TCGA-TM-A84O-01 1 55118674 55118674 G A MROH7 Silent p.G25G 0.57 TCGA-TM-A84O-01 20 31022401 31022402 GT - ASXL1 Frame_Shift_Del p.G629Afs*5 0.38 TCGA-TM-A84O-01 20 57251288 57251288 A G STX16 Missense_Mutation p.I307V 0.27 tolerated(0.94) benign(0.038) TCGA-TM-A84O-01 21 43161344 43161344 C T RIPK4 Missense_Mutation p.G670D 0.30 deleterious(0.03) probably_damaging(1) TCGA-TM-A84O-01 22 17073351 17073351 C T CCT8L2 Silent p.E30E 0.38 TCGA-TM-A84O-01 2 109526915 109526915 C G EDAR Splice_Site p.X268_splice 0.59 TCGA-TM-A84O-01 2 168725943 168725943 C G B3GALT1 Missense_Mutation p.Q132E 0.38 tolerated(1) benign(0.023) TCGA-TM-A84O-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A84O-01 2 37035867 37035867 C T VIT Missense_Mutation p.R548C 0.50 deleterious(0) probably_damaging(0.998) TCGA-TM-A84O-01 2 39997066 39997066 C T THUMPD2 Missense_Mutation p.M152I 0.29 tolerated(0.73) benign(0.003) TCGA-TM-A84O-01 2 69554140 69554140 T C GFPT1 Missense_Mutation p.K654R 0.26 tolerated(0.3) benign(0.001) TCGA-TM-A84O-01 2 74682565 74682565 C T INO80B Missense_Mutation p.H31Y 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.838) TCGA-TM-A84O-01 4 106157155 106157155 A T TET2 Nonsense_Mutation p.R686* 0.38 TCGA-TM-A84O-01 4 143326450 143326450 C T INPP4B Missense_Mutation p.R55H 0.40 tolerated(0.25) possibly_damaging(0.711) TCGA-TM-A84O-01 4 47537946 47537946 A G ATP10D Missense_Mutation p.N304S 0.21 deleterious(0.01) probably_damaging(1) TCGA-TM-A84O-01 6 136882674 136882674 G A MAP3K5 Silent p.S1328S 0.06 TCGA-TM-A84O-01 7 44046924 44046924 C A SPDYE1 Missense_Mutation p.H230Q 0.39 tolerated(0.3) benign(0.233) TCGA-TM-A84O-01 8 99961351 99961351 G A OSR2 Silent p.G57G 0.37 TCGA-TM-A84O-01 X 34962775 34962775 G C FAM47B Missense_Mutation p.K609N 0.36 tolerated(0.08) benign(0.153) TCGA-TM-A84Q-01 10 28906646 28906646 A G WAC Missense_Mutation p.T603A 0.46 tolerated(0.27) probably_damaging(0.986) TCGA-TM-A84Q-01 11 1944796 1944796 G A TNNT3 Missense_Mutation p.E15K 0.29 tolerated_low_confidence(0.08) unknown(0) TCGA-TM-A84Q-01 11 56185068 56185068 A G OR5R1 Missense_Mutation p.V214A 0.40 deleterious(0) possibly_damaging(0.741) TCGA-TM-A84Q-01 11 5655971 5655971 G C TRIM34 Missense_Mutation p.K210N 0.06 tolerated(0.32) benign(0.365) TCGA-TM-A84Q-01 11 5719736 5719736 C G TRIM22 Silent p.L237L 0.15 TCGA-TM-A84Q-01 11 59997411 59997411 A G MS4A4E Missense_Mutation p.F40L 0.35 tolerated_low_confidence(1) benign(0) TCGA-TM-A84Q-01 11 9163597 9163597 G C DENND5A Missense_Mutation p.N1190K 0.12 tolerated(0.77) benign(0.102) TCGA-TM-A84Q-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.45 TCGA-TM-A84Q-01 12 50055824 50055824 C T FMNL3 Missense_Mutation p.R126Q 0.32 tolerated(0.56) possibly_damaging(0.861) TCGA-TM-A84Q-01 15 40498485 40498485 C T BUB1B Missense_Mutation p.A612V 0.06 tolerated(1) benign(0.003) TCGA-TM-A84Q-01 17 7577536 7577536 T C TP53 Missense_Mutation p.R249G 0.87 deleterious(0) probably_damaging(0.991) TCGA-TM-A84Q-01 19 11546952 11546952 T C PRKCSH Missense_Mutation p.L5P 0.21 deleterious(0.01) unknown(0) TCGA-TM-A84Q-01 19 41007853 41007853 G C SPTBN4 Missense_Mutation p.E270D 0.33 deleterious(0) benign(0.149) TCGA-TM-A84Q-01 19 52538169 52538169 G C ZNF432 Missense_Mutation p.H255D 0.73 deleterious(0) probably_damaging(0.993) TCGA-TM-A84Q-01 19 56515394 56515394 G A NLRP5 Silent p.T125T 0.80 TCGA-TM-A84Q-01 1 115231190 115231190 T G AMPD1 Missense_Mutation p.E102D 0.08 tolerated(0.47) benign(0) TCGA-TM-A84Q-01 1 115282476 115282476 T C CSDE1 Silent p.G58G 0.04 TCGA-TM-A84Q-01 1 153317725 153317725 G T PGLYRP4 Missense_Mutation p.D91E 0.34 tolerated(1) benign(0.257) TCGA-TM-A84Q-01 1 186057402 186057402 C T HMCN1 Missense_Mutation p.R3191C 0.44 possibly_damaging(0.606) TCGA-TM-A84Q-01 1 202727567 202727567 C A KDM5B Silent p.G383G 0.33 TCGA-TM-A84Q-01 1 207288791 207288791 G A C4BPA Missense_Mutation p.R120H 0.39 tolerated(0.17) benign(0.148) TCGA-TM-A84Q-01 1 222715496 222715496 C G HHIPL2 Missense_Mutation p.V326L 0.10 tolerated(0.15) benign(0.009) TCGA-TM-A84Q-01 2 163030247 163030247 G C FAP Missense_Mutation p.L674V 0.04 tolerated(0.12) benign(0.283) TCGA-TM-A84Q-01 2 179440628 179440628 C T TTN Missense_Mutation p.G23411S 0.29 TCGA-TM-A84Q-01 2 17954555 17954557 TTA - GEN1 In_Frame_Del p.L355del 0.23 TCGA-TM-A84Q-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A84Q-01 2 48698446 48698446 C G PPP1R21 Nonsense_Mutation p.S343* 0.56 TCGA-TM-A84Q-01 3 58139287 58139287 G A FLNB Missense_Mutation p.V2216M 0.15 deleterious(0) probably_damaging(0.999) TCGA-TM-A84Q-01 4 156828909 156828909 T A TDO2 Missense_Mutation p.L90M 0.11 deleterious(0.02) possibly_damaging(0.702) TCGA-TM-A84Q-01 4 44700699 44700699 T C GUF1 3'UTR 0.47 TCGA-TM-A84Q-01 5 140960428 140960428 T C DIAPH1 Missense_Mutation p.E236G 0.31 unknown(0) TCGA-TM-A84Q-01 5 76129450 76129450 G A F2RL1 Missense_Mutation p.D340N 0.08 deleterious(0) probably_damaging(0.949) TCGA-TM-A84Q-01 6 33638466 33638466 C T ITPR3 Silent p.N820N 0.10 TCGA-TM-A84Q-01 7 25194757 25194757 G A C7orf31 Silent p.R156R 0.12 TCGA-TM-A84Q-01 7 57188689 57188689 C T ZNF479 Missense_Mutation p.V145I 0.36 tolerated(0.12) benign(0.214) TCGA-TM-A84Q-01 7 86415600 86415600 C G GRM3 Missense_Mutation p.F164L 0.31 deleterious(0.02) probably_damaging(1) TCGA-TM-A84Q-01 X 100808802 100808803 - TC ARMCX1 Frame_Shift_Ins p.C298Sfs*13 0.16 TCGA-TM-A84Q-01 X 27997608 27997608 G C DCAF8L1 3'UTR 0.82 TCGA-TM-A84Q-01 X 76937741 76937744 TTAC - ATRX Frame_Shift_Del p.V1002Lfs*30 0.78 TCGA-TM-A84R-01 11 57243804 57243804 G A RTN4RL2 Missense_Mutation p.R228H 0.09 deleterious(0.01) probably_damaging(0.975) TCGA-TM-A84R-01 13 24892993 24892993 G A C1QTNF9 Silent p.G68G 0.08 TCGA-TM-A84R-01 14 20528495 20528495 G A OR4L1 Missense_Mutation p.V98M 0.14 tolerated(1) benign(0) TCGA-TM-A84R-01 15 22861861 22861861 G A TUBGCP5 Silent p.K627K 0.03 TCGA-TM-A84R-01 15 90631838 90631838 C A IDH2 Missense_Mutation p.R172M 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-TM-A84R-01 20 16360693 16360693 G A KIF16B Missense_Mutation p.R652C 0.05 deleterious(0.01) probably_damaging(0.992) TCGA-TM-A84R-01 22 24379404 24379404 T C GSTT1 Missense_Mutation p.H103R 0.11 deleterious(0.01) benign(0.383) TCGA-TM-A84R-01 2 170863700 170863700 A G UBR3 Silent p.P1410P 0.30 TCGA-TM-A84R-01 3 49335318 49335318 C T USP4 Missense_Mutation p.R559Q 0.07 deleterious(0.02) possibly_damaging(0.889) TCGA-TM-A84R-01 4 110603877 110603877 A G CCDC109B Silent p.E197E 0.04 TCGA-TM-A84R-01 6 32944712 32944712 A G BRD2 Missense_Mutation p.K400R 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-TM-A84R-01 7 23293803 23293803 C T GPNMB Missense_Mutation p.A80V 0.04 tolerated(0.22) benign(0.348) TCGA-TM-A84R-01 9 80043895 80043895 C A GNA14 Missense_Mutation p.E217D 0.07 deleterious(0.03) benign(0.001) TCGA-TM-A84R-01 X 120182972 120182972 T C GLUD2 Silent p.F478F 0.15 TCGA-TM-A84S-01 12 43944836 43944836 C T ADAMTS20 Missense_Mutation p.G110E 0.16 deleterious(0) probably_damaging(1) TCGA-TM-A84S-01 12 57867389 57867389 C T ARHGAP9 Missense_Mutation p.C674Y 0.20 tolerated(0.06) probably_damaging(0.982) TCGA-TM-A84S-01 14 39639329 39639329 T C TRAPPC6B 5'UTR 0.44 TCGA-TM-A84S-01 14 90784399 90784399 T C NRDE2 Silent p.Q41Q 0.33 TCGA-TM-A84S-01 15 43827518 43827518 C T PPIP5K1 Missense_Mutation p.G1219E 0.35 tolerated_low_confidence(0.18) benign(0.003) TCGA-TM-A84S-01 16 4016307 4016307 G A ADCY9 Silent p.I1177I 0.12 TCGA-TM-A84S-01 16 70295033 70295033 G C AARS Missense_Mutation p.Q567E 0.31 deleterious(0) possibly_damaging(0.489) TCGA-TM-A84S-01 17 11881794 11881794 G T ZNF18 Missense_Mutation p.P377H 0.33 deleterious(0.01) possibly_damaging(0.681) TCGA-TM-A84S-01 17 34862971 34862971 C T MYO19 Missense_Mutation p.R492H 0.13 deleterious(0) probably_damaging(0.998) TCGA-TM-A84S-01 17 45377877 45377877 A G ITGB3 Silent p.G649G 0.07 TCGA-TM-A84S-01 19 18652528 18652528 C T FKBP8 Missense_Mutation p.A85T 0.35 tolerated(0.6) benign(0.004) TCGA-TM-A84S-01 1 27101006 27101006 C T ARID1A Nonsense_Mutation p.Q1430* 0.18 TCGA-TM-A84S-01 22 40343126 40343126 A G GRAP2 Missense_Mutation p.K6E 0.06 deleterious(0) probably_damaging(0.999) TCGA-TM-A84S-01 2 161052119 161052119 C T ITGB6 Silent p.A118A 0.06 TCGA-TM-A84S-01 2 171863512 171863512 C G TLK1 Missense_Mutation p.W493S 0.22 deleterious(0) probably_damaging(0.99) TCGA-TM-A84S-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A84S-01 2 55566774 55566774 T C CCDC88A Silent p.K448K 0.07 TCGA-TM-A84S-01 3 178952072 178952072 A G PIK3CA Missense_Mutation p.M1043V 0.11 tolerated(0.06) benign(0.037) TCGA-TM-A84S-01 5 132262879 132262879 A G AFF4 Silent p.P328P 0.06 TCGA-TM-A84S-01 5 170160874 170160874 T C KCNIP1 Missense_Mutation p.L203S 0.08 deleterious(0.02) probably_damaging(0.981) TCGA-TM-A84S-01 5 179228989 179228989 C T MGAT4B Silent p.T41T 0.18 TCGA-TM-A84S-01 5 33951714 33951714 G A SLC45A2 Silent p.V367V 0.14 TCGA-TM-A84S-01 8 120435398 120435398 A G NOV 3'UTR 0.12 TCGA-TM-A84S-01 9 136031369 136031369 C T GBGT1 Intron 0.25 TCGA-TM-A84S-01 9 99800203 99800203 G C CTSV Silent p.G41G 0.07 TCGA-TM-A84T-01 10 24813550 24813550 G A KIAA1217 Missense_Mutation p.V919I 0.50 tolerated(0.44) benign(0.008) TCGA-TM-A84T-01 15 43545071 43545071 C T TGM5 Missense_Mutation p.A250T 0.54 tolerated(0.99) benign(0.002) TCGA-TM-A84T-01 15 65885872 65885872 C A VWA9 Nonsense_Mutation p.E237* 0.38 TCGA-TM-A84T-01 16 138697 138697 C G NPRL3 Missense_Mutation p.R514T 0.43 deleterious(0) possibly_damaging(0.845) TCGA-TM-A84T-01 16 20748165 20748165 C G THUMPD1 Intron 0.52 TCGA-TM-A84T-01 16 20748258 20748258 C G THUMPD1 Missense_Mutation p.E336Q 0.37 deleterious_low_confidence(0.04) possibly_damaging(0.655) TCGA-TM-A84T-01 17 38933340 38933340 G A KRT27 Missense_Mutation p.R431C 0.51 tolerated(0.18) benign(0.008) TCGA-TM-A84T-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.93 deleterious(0) probably_damaging(0.998) TCGA-TM-A84T-01 19 56953812 56953812 G C ZNF667 Missense_Mutation p.I184M 0.07 tolerated(0.24) possibly_damaging(0.618) TCGA-TM-A84T-01 1 243480092 243480092 T G SDCCAG8 Missense_Mutation p.V322G 0.39 deleterious(0.02) possibly_damaging(0.586) TCGA-TM-A84T-01 1 247695157 247695157 G A OR2C3 Silent p.Y219Y 0.52 TCGA-TM-A84T-01 20 44577646 44577646 T C ZNF335 Silent p.Q1325Q 0.45 TCGA-TM-A84T-01 21 32638783 32638783 C T TIAM1 Missense_Mutation p.R169H 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-TM-A84T-01 2 201435848 201435848 G A SGOL2 Missense_Mutation p.R260H 0.06 tolerated(1) benign(0) TCGA-TM-A84T-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TM-A84T-01 2 40656574 40656574 G C SLC8A1 Missense_Mutation p.P283A 0.42 tolerated(0.36) benign(0.024) TCGA-TM-A84T-01 3 170078468 170078468 T C SKIL Missense_Mutation p.S117P 0.32 tolerated(0.32) benign(0.118) TCGA-TM-A84T-01 4 187524178 187524178 G C FAT1 Missense_Mutation p.C3787W 0.26 probably_damaging(0.999) TCGA-TM-A84T-01 5 71493288 71493288 A G MAP1B Missense_Mutation p.K1369R 0.46 probably_damaging(0.934) TCGA-TM-A84T-01 7 151791479 151791479 A G GALNT11 Missense_Mutation p.Y56C 0.30 tolerated(0.13) possibly_damaging(0.471) TCGA-TM-A84T-01 9 131747270 131747270 C T NUP188 Missense_Mutation p.R685C 0.25 tolerated(0.07) possibly_damaging(0.863) TCGA-TM-A84T-01 X 11139866 11139866 C T HCCS Missense_Mutation p.A248V 0.43 deleterious(0) probably_damaging(0.999) TCGA-TM-A84T-01 X 12905884 12905884 G C TLR7 Missense_Mutation p.D753H 0.87 deleterious(0) probably_damaging(1) TCGA-TM-A84T-01 X 76937603 76937604 TT C ATRX Frame_Shift_Del p.I1049* 0.37 TCGA-TQ-A7RF-01 10 33619800 33619800 G A NRP1 Silent p.G28G 0.27 TCGA-TQ-A7RF-01 11 49974720 49974720 T A OR4C13 Missense_Mutation p.F249Y 0.39 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-TQ-A7RF-01 11 49974721 49974721 T C OR4C13 Silent p.F249F 0.40 TCGA-TQ-A7RF-01 11 58034747 58034747 A T OR10W1 Missense_Mutation p.I195K 0.51 deleterious(0.01) benign(0.049) TCGA-TQ-A7RF-01 11 621209 621209 G A CDHR5 Silent p.T220T 0.49 TCGA-TQ-A7RF-01 12 7639259 7639259 G A CD163 Missense_Mutation p.A765V 0.15 deleterious(0) probably_damaging(1) TCGA-TQ-A7RF-01 12 7899946 7899946 G T CLEC4C 5'UTR 0.14 TCGA-TQ-A7RF-01 17 7579361 7579361 A G TP53 Missense_Mutation p.F109S 0.90 deleterious(0) probably_damaging(1) TCGA-TQ-A7RF-01 18 5428387 5428387 G C EPB41L3 Missense_Mutation p.N330K 0.03 deleterious(0) probably_damaging(0.999) TCGA-TQ-A7RF-01 19 1487226 1487226 C T PCSK4 Missense_Mutation p.A257T 0.58 deleterious(0) probably_damaging(0.998) TCGA-TQ-A7RF-01 1 152324784 152324784 G A FLG2 Silent p.H1826H 0.51 TCGA-TQ-A7RF-01 1 155582849 155582849 G T MSTO1 Missense_Mutation p.A370S 0.04 deleterious(0.04) possibly_damaging(0.566) TCGA-TQ-A7RF-01 1 186277784 186277784 C T PRG4 Missense_Mutation p.T978I 0.40 unknown(0) TCGA-TQ-A7RF-01 22 29629640 29629640 G A EMID1 Silent p.G317G 0.33 TCGA-TQ-A7RF-01 2 179319178 179319178 G A DFNB59 Missense_Mutation p.A111T 0.04 tolerated(0.1) probably_damaging(0.999) TCGA-TQ-A7RF-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RF-01 3 108773717 108773717 G A MORC1 Silent p.G396G 0.39 TCGA-TQ-A7RF-01 3 46944925 46944925 C T PTH1R Missense_Mutation p.R521C 0.47 deleterious(0) probably_damaging(0.98) TCGA-TQ-A7RF-01 4 102791660 102791661 AG - BANK1 Splice_Site p.X255_splice 0.37 TCGA-TQ-A7RF-01 4 104062907 104062907 C A CENPE Missense_Mutation p.K1821N 0.06 probably_damaging(0.959) TCGA-TQ-A7RF-01 4 114208764 114208764 G A ANK2 Missense_Mutation p.G695R 0.09 probably_damaging(1) TCGA-TQ-A7RF-01 4 13338289 13338289 C A HSP90AB2P RNA 0.25 TCGA-TQ-A7RF-01 4 147431123 147431123 T C SLC10A7 Missense_Mutation p.I88V 0.55 tolerated(1) benign(0.003) TCGA-TQ-A7RF-01 5 140531282 140531282 G A PCDHB6 Missense_Mutation p.A482T 0.45 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-TQ-A7RF-01 6 170115929 170115930 TC - PHF10 Frame_Shift_Del p.K190Sfs*2 0.47 TCGA-TQ-A7RF-01 6 30668317 30668317 C A MDC1 Silent p.L2065L 0.34 TCGA-TQ-A7RF-01 7 30085837 30085837 G C PLEKHA8 Missense_Mutation p.D57H 0.44 deleterious(0) probably_damaging(0.996) TCGA-TQ-A7RF-01 8 113484839 113484839 T C CSMD3 Missense_Mutation p.I1792M 0.14 deleterious(0) probably_damaging(0.981) TCGA-TQ-A7RF-01 8 113484933 113484933 G A CSMD3 Missense_Mutation p.P1761L 0.13 deleterious(0.01) possibly_damaging(0.816) TCGA-TQ-A7RF-01 8 72965028 72965028 C T RP11-383H13.1 3'UTR 0.27 TCGA-TQ-A7RF-01 8 95531654 95531654 A C KIAA1429 Missense_Mutation p.I691S 0.42 tolerated(0.16) benign(0.079) TCGA-TQ-A7RF-01 9 74347348 74347348 G C TMEM2 Missense_Mutation p.I494M 0.45 deleterious(0) possibly_damaging(0.86) TCGA-TQ-A7RF-01 X 10181805 10181805 C T CLCN4 Missense_Mutation p.A554V 0.38 tolerated(0.67) benign(0.053) TCGA-TQ-A7RF-01 X 153458901 153458901 G T OPN1MW Silent p.V249V 0.24 TCGA-TQ-A7RG-01 10 115639379 115639379 T C NHLRC2 Silent p.F278F 0.06 TCGA-TQ-A7RG-01 10 27529418 27529418 A C ACBD5 Intron 0.41 TCGA-TQ-A7RG-01 11 108352771 108352771 C G KDELC2 Missense_Mutation p.G288A 0.16 tolerated(0.22) probably_damaging(1) TCGA-TQ-A7RG-01 11 43283724 43283724 G A HNRNPKP3 RNA 0.21 TCGA-TQ-A7RG-01 11 55406642 55406642 C T OR4P4 Missense_Mutation p.A270V 0.07 deleterious(0.02) possibly_damaging(0.483) TCGA-TQ-A7RG-01 13 41303682 41303682 C T MRPS31 Silent p.L338L 0.15 TCGA-TQ-A7RG-01 14 105609285 105609285 G A JAG2 Missense_Mutation p.T1155M 0.47 tolerated(0.48) benign(0.03) TCGA-TQ-A7RG-01 14 24901559 24901559 G A KHNYN Silent p.P364P 0.15 TCGA-TQ-A7RG-01 14 47315042 47315042 T C MDGA2 Missense_Mutation p.I972M 0.11 deleterious(0.05) probably_damaging(0.998) TCGA-TQ-A7RG-01 16 57110788 57110788 G A NLRC5 Silent p.R1603R 0.45 TCGA-TQ-A7RG-01 17 47656725 47656725 C G NXPH3 3'UTR 0.38 TCGA-TQ-A7RG-01 19 31769127 31769127 T A TSHZ3 Missense_Mutation p.K524N 0.33 deleterious(0) probably_damaging(0.997) TCGA-TQ-A7RG-01 19 42791393 42791394 - T CIC Splice_Site p.X151_splice 0.16 TCGA-TQ-A7RG-01 1 147381082 147381082 G A GJA8 Missense_Mutation p.E334K 0.12 tolerated(0.57) benign(0.002) TCGA-TQ-A7RG-01 1 15382609 15382610 - G KAZN Frame_Shift_Ins p.T251Dfs*122 0.28 TCGA-TQ-A7RG-01 1 244217137 244217138 - A ZBTB18 Frame_Shift_Ins p.C22Vfs*13 0.31 TCGA-TQ-A7RG-01 20 40049627 40049627 C G CHD6 Missense_Mutation p.G1883A 0.11 tolerated_low_confidence(0.33) benign(0.002) TCGA-TQ-A7RG-01 22 30688804 30688804 G C TBC1D10A Missense_Mutation p.R370G 0.40 deleterious(0) possibly_damaging(0.696) TCGA-TQ-A7RG-01 22 44583736 44583736 G A PARVG Silent p.G75G 0.08 TCGA-TQ-A7RG-01 22 50988099 50988099 C T KLHDC7B Missense_Mutation p.R502W 0.08 deleterious(0) probably_damaging(0.998) TCGA-TQ-A7RG-01 2 202626336 202626336 G A ALS2 Silent p.N127N 0.40 TCGA-TQ-A7RG-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RG-01 2 68873329 68873329 C T PROKR1 Missense_Mutation p.R126C 0.08 deleterious(0) probably_damaging(0.954) TCGA-TQ-A7RG-01 3 131068703 131068703 G A NEK11 3'UTR 0.48 TCGA-TQ-A7RG-01 3 14949183 14949183 G A FGD5 Missense_Mutation p.V1101I 0.16 deleterious(0.02) benign(0.395) TCGA-TQ-A7RG-01 3 52538884 52538884 C T STAB1 Nonsense_Mutation p.Q457* 0.44 TCGA-TQ-A7RG-01 4 25849364 25849364 G A SEL1L3 Silent p.N95N 0.03 TCGA-TQ-A7RG-01 5 140166994 140166994 C T PCDHA1 Silent p.T373T 0.16 TCGA-TQ-A7RG-01 5 36976456 36976456 G T NIPBL Nonsense_Mutation p.E483* 0.09 TCGA-TQ-A7RG-01 6 158900996 158900996 C T TULP4 Missense_Mutation p.P414S 0.37 tolerated(0.14) benign(0.345) TCGA-TQ-A7RG-01 6 31474146 31474146 G A MICB Silent p.Q184Q 0.44 TCGA-TQ-A7RG-01 6 74063933 74063933 C T DPPA5 Missense_Mutation p.A6T 0.44 tolerated(0.56) benign(0.032) TCGA-TQ-A7RG-01 6 7845400 7845400 G A BMP6 Missense_Mutation p.R231H 0.10 tolerated(0.42) benign(0.016) TCGA-TQ-A7RG-01 7 57528833 57528833 T C ZNF716 Silent p.F222F 0.17 TCGA-TQ-A7RG-01 8 8750064 8750064 G A MFHAS1 Missense_Mutation p.R169W 0.16 tolerated(0.14) possibly_damaging(0.744) TCGA-TQ-A7RG-01 8 87568561 87568561 C T CPNE3 Nonsense_Mutation p.Q496* 0.11 TCGA-TQ-A7RG-01 9 101068571 101068571 G A GABBR2 Silent p.N687N 0.38 TCGA-TQ-A7RH-01 10 102698451 102698451 C T FAM178A Missense_Mutation p.P871L 0.07 deleterious(0) probably_damaging(0.996) TCGA-TQ-A7RH-01 10 115609945 115609945 C A DCLRE1A Nonsense_Mutation p.E307* 0.36 TCGA-TQ-A7RH-01 10 12238281 12238281 G C CDC123 Missense_Mutation p.A13P 0.06 tolerated(0.19) benign(0.138) TCGA-TQ-A7RH-01 10 63170316 63170316 C T TMEM26 Missense_Mutation p.A291T 0.33 tolerated(0.09) possibly_damaging(0.501) TCGA-TQ-A7RH-01 10 76735813 76735813 G A KAT6B Missense_Mutation p.R573H 0.04 benign(0.001) TCGA-TQ-A7RH-01 10 81052006 81052026 GCAGCAGCGGCAGTGGCAGCA - ZMIZ1 In_Frame_Del p.A287_A293del 0.26 TCGA-TQ-A7RH-01 11 119061065 119061065 G A CCDC153 Missense_Mutation p.R193C 0.38 tolerated(0.27) benign(0.016) TCGA-TQ-A7RH-01 11 124618252 124618252 C T VSIG2 Intron 0.29 TCGA-TQ-A7RH-01 11 4869860 4869860 A T OR51S1 Silent p.A193A 0.10 TCGA-TQ-A7RH-01 11 55111566 55111566 A G OR4A16 Missense_Mutation p.K297R 0.38 tolerated_low_confidence(0.53) benign(0.005) TCGA-TQ-A7RH-01 11 55111605 55111605 G T OR4A16 Missense_Mutation p.R310I 0.30 tolerated_low_confidence(0.09) benign(0.022) TCGA-TQ-A7RH-01 12 7635291 7635291 G A CD163 Silent p.F1065F 0.04 TCGA-TQ-A7RH-01 13 114107558 114107558 G A ADPRHL1 Silent p.T65T 0.72 TCGA-TQ-A7RH-01 13 25486740 25486740 G T CENPJ Missense_Mutation p.L142I 0.09 deleterious(0) probably_damaging(0.997) TCGA-TQ-A7RH-01 16 31072792 31072792 C T ZNF668 Missense_Mutation p.C509Y 0.34 tolerated(0.29) benign(0.086) TCGA-TQ-A7RH-01 16 48117859 48117859 A G ABCC12 Silent p.V1318V 0.40 TCGA-TQ-A7RH-01 17 27207790 27207790 G A FLOT2 Nonsense_Mutation p.R397* 0.10 TCGA-TQ-A7RH-01 17 3974138 3974138 C A ZZEF1 Silent p.G1305G 0.38 TCGA-TQ-A7RH-01 17 41004014 41004014 G A AOC3 Silent p.L218L 0.26 TCGA-TQ-A7RH-01 17 73780866 73780866 T - UNK 5'UTR 0.13 TCGA-TQ-A7RH-01 17 7578413 7578413 C A TP53 Missense_Mutation p.V173L 0.83 deleterious(0) probably_damaging(0.998) TCGA-TQ-A7RH-01 19 16059822 16059822 C T OR10H4 Missense_Mutation p.P2L 0.06 tolerated(0.3) benign(0.001) TCGA-TQ-A7RH-01 19 54314138 54314148 CACTCTGGTTC - NLRP12 Frame_Shift_Del p.M255Ifs*16 0.76 TCGA-TQ-A7RH-01 19 9072517 9072517 G T MUC16 Missense_Mutation p.Q4977K 0.23 unknown(0) TCGA-TQ-A7RH-01 1 1223058 1223058 G A SCNN1D Missense_Mutation p.G469S 0.09 tolerated(1) benign(0.008) TCGA-TQ-A7RH-01 1 247902032 247902032 T C OR14K1 Missense_Mutation p.M39T 0.16 deleterious(0.01) benign(0.003) TCGA-TQ-A7RH-01 21 45993836 45993836 C T KRTAP10-4 Silent p.C67C 0.14 TCGA-TQ-A7RH-01 21 47557244 47557244 G A FTCD Missense_Mutation p.A483V 0.57 deleterious(0) possibly_damaging(0.698) TCGA-TQ-A7RH-01 2 196582986 196582986 C T SLC39A10 Silent p.F692F 0.25 TCGA-TQ-A7RH-01 2 202323545 202323545 C A STRADB Silent p.L17L 0.06 TCGA-TQ-A7RH-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RH-01 2 21236129 21236129 G T APOB Nonsense_Mutation p.Y1373* 0.04 TCGA-TQ-A7RH-01 2 74901641 74901641 G A SEMA4F Missense_Mutation p.R280Q 0.30 tolerated(0.4) benign(0.017) TCGA-TQ-A7RH-01 3 140281990 140281990 C T CLSTN2 Silent p.P809P 0.08 TCGA-TQ-A7RH-01 3 39373836 39373836 T C CCR8 Missense_Mutation p.L5P 0.41 tolerated(0.25) benign(0.002) TCGA-TQ-A7RH-01 3 48725944 48725944 T C IP6K2 Missense_Mutation p.D348G 0.28 tolerated(0.37) benign(0.371) TCGA-TQ-A7RH-01 3 98188566 98188566 T C OR5K1 Missense_Mutation p.I49T 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-TQ-A7RH-01 4 25836841 25836841 G A SEL1L3 Missense_Mutation p.R280C 0.06 tolerated(0.08) benign(0.002) TCGA-TQ-A7RH-01 6 129419488 129419488 G A LAMA2 Silent p.P189P 0.36 TCGA-TQ-A7RH-01 7 102604004 102604004 G A FBXL13 Nonsense_Mutation p.R234* 0.20 TCGA-TQ-A7RH-01 7 143632509 143632509 T C OR2F2 Missense_Mutation p.F62L 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-TQ-A7RH-01 7 143956629 143956629 G A OR2A7 Silent p.S31S 0.03 TCGA-TQ-A7RH-01 7 149489293 149489293 G A SSPO Intron 0.17 TCGA-TQ-A7RH-01 7 50455076 50455076 G A IKZF1 Intron 0.27 TCGA-TQ-A7RH-01 8 11705211 11705211 G A CTSB Missense_Mutation p.T218I 0.27 deleterious(0.03) benign(0.014) TCGA-TQ-A7RH-01 8 145690245 145690245 A C CYHR1 Missense_Mutation p.S14A 0.22 tolerated_low_confidence(0.39) benign(0.277) TCGA-TQ-A7RH-01 8 8185589 8185589 G A SGK223 Silent p.G901G 0.06 TCGA-TQ-A7RH-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.11 TCGA-TQ-A7RH-01 9 95081532 95081532 C T NOL8 Missense_Mutation p.V130M 0.34 deleterious(0) probably_damaging(0.997) TCGA-TQ-A7RH-01 X 107417809 107417809 G T COL4A6 Missense_Mutation p.P1001H 0.45 probably_damaging(0.999) TCGA-TQ-A7RH-01 X 118222263 118222263 G A KIAA1210 Missense_Mutation p.S977F 0.85 tolerated(0.19) benign(0.051) TCGA-TQ-A7RH-01 X 76849196 76849196 A G ATRX Missense_Mutation p.L2027P 0.65 probably_damaging(0.976) TCGA-TQ-A7RI-01 10 70980063 70980063 A C HKDC1 5'UTR 0.37 TCGA-TQ-A7RI-01 11 47303193 47303193 A G MADD Missense_Mutation p.E453G 0.07 tolerated(0.07) benign(0.006) TCGA-TQ-A7RI-01 11 66307297 66307297 T C ZDHHC24 Splice_Site p.X187_splice 0.31 TCGA-TQ-A7RI-01 11 7024038 7024039 AT - ZNF214 Frame_Shift_Del p.I10Yfs*37 0.27 TCGA-TQ-A7RI-01 12 29786175 29786175 G T TMTC1 Missense_Mutation p.L345M 0.38 deleterious(0) probably_damaging(1) TCGA-TQ-A7RI-01 12 7528426 7528426 T G CD163L1 Missense_Mutation p.K852N 0.38 deleterious(0.04) benign(0.05) TCGA-TQ-A7RI-01 13 101294550 101294550 G A TMTC4 Missense_Mutation p.A219V 0.39 tolerated(0.28) benign(0.006) TCGA-TQ-A7RI-01 13 103421917 103421917 C A TEX30 Intron 0.18 TCGA-TQ-A7RI-01 14 21679497 21679498 - A HNRNPC Intron 0.26 TCGA-TQ-A7RI-01 14 24655922 24655922 T C IPO4 Missense_Mutation p.K278E 0.50 deleterious(0) possibly_damaging(0.687) TCGA-TQ-A7RI-01 15 50999899 50999899 T C SPPL2A 3'UTR 0.28 TCGA-TQ-A7RI-01 16 57760786 57760786 G A CCDC135 Missense_Mutation p.E673K 0.32 tolerated(0.4) benign(0.18) TCGA-TQ-A7RI-01 16 87866339 87866339 C T SLC7A5 3'UTR 0.21 TCGA-TQ-A7RI-01 17 78973021 78973021 C T CHMP6 3'UTR 0.30 TCGA-TQ-A7RI-01 19 22780167 22780167 A G RN7SL860P 5'Flank 0.37 TCGA-TQ-A7RI-01 19 42790954 42790955 TG - CIC Frame_Shift_Del p.F35Pfs*15 0.28 TCGA-TQ-A7RI-01 19 42791853 42791853 C T CIC Nonsense_Mutation p.Q247* 0.06 TCGA-TQ-A7RI-01 1 16953781 16953781 A G CROCCP2 3'Flank 0.33 TCGA-TQ-A7RI-01 1 248616870 248616870 T C OR2T2 Missense_Mutation p.Y258H 0.24 deleterious(0) probably_damaging(0.999) TCGA-TQ-A7RI-01 1 70877077 70877079 TCT - CTH 5'UTR 0.53 TCGA-TQ-A7RI-01 22 20761037 20761037 A G ZNF74 Missense_Mutation p.T572A 0.42 tolerated(0.45) benign(0.001) TCGA-TQ-A7RI-01 22 38073059 38073059 C T LGALS1 Missense_Mutation p.P26S 0.37 tolerated(0.21) benign(0.102) TCGA-TQ-A7RI-01 2 179611166 179611166 C T TTN Intron 0.05 TCGA-TQ-A7RI-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RI-01 2 26537512 26537512 C T GPR113 Intron 0.08 TCGA-TQ-A7RI-01 4 68456652 68456652 C A STAP1 Missense_Mutation p.T237N 0.06 deleterious(0.02) probably_damaging(0.977) TCGA-TQ-A7RI-01 5 137895665 137895665 G A HSPA9 Missense_Mutation p.T433M 0.09 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-TQ-A7RI-01 5 7835522 7835522 T G C5orf49 Missense_Mutation p.K79N 0.32 deleterious(0.04) benign(0.082) TCGA-TQ-A7RI-01 6 27420565 27420565 G C ZNF184 Missense_Mutation p.A258G 0.11 deleterious(0.03) probably_damaging(0.978) TCGA-TQ-A7RI-01 6 90097209 90097210 AA - RRAGD Frame_Shift_Del p.F83Sfs*15 0.32 TCGA-TQ-A7RI-01 8 52321614 52321614 G A PXDNL Missense_Mutation p.A857V 0.09 tolerated(0.25) benign(0.26) TCGA-TQ-A7RI-01 8 90947782 90947782 T C NBN 3'UTR 0.43 TCGA-TQ-A7RI-01 9 90283584 90283584 C T DAPK1 Nonsense_Mutation p.R666* 0.08 TCGA-TQ-A7RI-01 X 129042694 129042694 C T UTP14A Silent p.F74F 0.04 TCGA-TQ-A7RI-01 X 138879424 138879424 T C ATP11C Missense_Mutation p.T310A 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-TQ-A7RI-01 X 151997187 151997187 T C CETN2 Missense_Mutation p.K108R 0.37 tolerated(0.1) benign(0.075) TCGA-TQ-A7RI-01 X 73061239 73061241 TCT - XIST RNA 0.22 TCGA-TQ-A7RJ-01 10 35324207 35324207 C T CUL2 Missense_Mutation p.V318I 0.33 tolerated(0.21) benign(0.023) TCGA-TQ-A7RJ-01 10 7214023 7214023 G A SFMBT2 Missense_Mutation p.A750V 0.11 tolerated(0.43) benign(0.007) TCGA-TQ-A7RJ-01 10 78651416 78651416 G A KCNMA1 Missense_Mutation p.P1053L 0.46 deleterious(0) probably_damaging(0.994) TCGA-TQ-A7RJ-01 10 98766462 98766462 C G SLIT1 Missense_Mutation p.E1119D 0.25 deleterious(0.02) probably_damaging(0.99) TCGA-TQ-A7RJ-01 11 102206866 102206866 G A BIRC3 Silent p.T498T 0.06 TCGA-TQ-A7RJ-01 11 128642720 128642720 G C FLI1 Missense_Mutation p.E143D 0.04 tolerated(0.67) benign(0.004) TCGA-TQ-A7RJ-01 11 236177 236177 C G SIRT3 Missense_Mutation p.R51T 0.42 tolerated_low_confidence(0.18) benign(0.005) TCGA-TQ-A7RJ-01 11 55405846 55405846 A C OR4P4 Missense_Mutation p.N5H 0.40 tolerated(0.15) benign(0.012) TCGA-TQ-A7RJ-01 11 77885166 77885166 G A KCTD21 Silent p.N145N 0.07 TCGA-TQ-A7RJ-01 11 93754555 93754555 T A HEPHL1 Silent p.A7A 0.03 TCGA-TQ-A7RJ-01 12 49692207 49692207 T A PRPH 3'UTR 0.46 TCGA-TQ-A7RJ-01 13 20641084 20641084 G A ZMYM2 Missense_Mutation p.V1076I 0.34 tolerated(0.18) benign(0.014) TCGA-TQ-A7RJ-01 14 20825295 20825295 T C PARP2 Missense_Mutation p.L485P 0.04 deleterious(0) probably_damaging(1) TCGA-TQ-A7RJ-01 14 22476212 22476212 C T TRAV19 Missense_Mutation p.R48C 0.09 deleterious(0) possibly_damaging(0.764) TCGA-TQ-A7RJ-01 14 53113132 53113132 A G ERO1L Silent p.C391C 0.09 TCGA-TQ-A7RJ-01 15 33149252 33149252 G C FMN1 Missense_Mutation p.P1075A 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-TQ-A7RJ-01 16 29827954 29827954 C T PAGR1 Silent p.T36T 0.36 TCGA-TQ-A7RJ-01 17 40957798 40957800 AAG - CNTD1 In_Frame_Del p.E161del 0.11 TCGA-TQ-A7RJ-01 17 65899908 65899908 A G BPTF Silent p.L849L 0.06 TCGA-TQ-A7RJ-01 17 7415831 7415831 A T POLR2A Missense_Mutation p.M1510L 0.41 benign(0) TCGA-TQ-A7RJ-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.37 TCGA-TQ-A7RJ-01 17 7579328 7579328 T - TP53 Frame_Shift_Del p.K120Sfs*3 0.37 TCGA-TQ-A7RJ-01 17 79410429 79410429 G A RP11-1055B8.7 Missense_Mutation p.R685H 0.10 probably_damaging(0.996) TCGA-TQ-A7RJ-01 18 8370965 8370965 A G PTPRM Silent p.L1044L 0.05 TCGA-TQ-A7RJ-01 19 38912756 38912756 G A RASGRP4 Nonsense_Mutation p.R21* 0.34 TCGA-TQ-A7RJ-01 19 6391946 6391946 T C GTF2F1 Silent p.A33A 0.23 TCGA-TQ-A7RJ-01 19 9075042 9075042 G A MUC16 Missense_Mutation p.T4135I 0.35 unknown(0) TCGA-TQ-A7RJ-01 1 145533526 145533526 C G ITGA10 Missense_Mutation p.A470G 0.05 tolerated(0.19) benign(0.001) TCGA-TQ-A7RJ-01 1 173883867 173883867 G A SERPINC1 Missense_Mutation p.R78W 0.04 deleterious(0.02) possibly_damaging(0.639) TCGA-TQ-A7RJ-01 1 207078186 207078186 C T FAIM3 3'UTR 0.36 TCGA-TQ-A7RJ-01 1 242253223 242253223 T A PLD5 Missense_Mutation p.K515I 0.03 tolerated_low_confidence(0.18) benign(0.003) TCGA-TQ-A7RJ-01 1 43916044 43916044 C G SZT2 Missense_Mutation p.Q3341E 0.31 deleterious(0.02) possibly_damaging(0.897) TCGA-TQ-A7RJ-01 1 62677082 62677082 C T L1TD1 3'UTR 0.23 TCGA-TQ-A7RJ-01 1 978952 978952 C T AGRN Silent p.C546C 0.41 TCGA-TQ-A7RJ-01 20 19674050 19674050 C G SLC24A3 Missense_Mutation p.S491C 0.05 deleterious(0) probably_damaging(1) TCGA-TQ-A7RJ-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-TQ-A7RJ-01 2 25467117 25467117 G A DNMT3A Silent p.C586C 0.36 TCGA-TQ-A7RJ-01 3 180372584 180372584 T C CCDC39 Missense_Mutation p.D299G 0.06 tolerated(0.14) benign(0.062) TCGA-TQ-A7RJ-01 4 138449670 138449670 A C PCDH18 Missense_Mutation p.F901C 0.04 deleterious(0) probably_damaging(0.931) TCGA-TQ-A7RJ-01 5 32126618 32126618 C G GOLPH3 Missense_Mutation p.M199I 0.03 deleterious(0.02) benign(0.057) TCGA-TQ-A7RJ-01 6 108492765 108492765 C T NR2E1 Silent p.S43S 0.04 TCGA-TQ-A7RJ-01 6 13273136 13273136 A G TBC1D7 Intron 0.04 TCGA-TQ-A7RJ-01 6 136596819 136596819 T C BCLAF1 Missense_Mutation p.D568G 0.07 deleterious(0) possibly_damaging(0.728) TCGA-TQ-A7RJ-01 6 144878380 144878380 G C UTRN Missense_Mutation p.D2408H 0.05 deleterious(0) probably_damaging(0.998) TCGA-TQ-A7RJ-01 6 16290835 16290835 A G GMPR Silent p.G280G 0.05 TCGA-TQ-A7RJ-01 6 26031889 26031889 C G HIST1H3B Missense_Mutation p.E134Q 0.05 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-TQ-A7RJ-01 6 31726366 31726366 C T MSH5 Silent p.V395V 0.07 TCGA-TQ-A7RJ-01 6 31726367 31726367 C T MSH5 Missense_Mutation p.L396F 0.07 deleterious(0.02) possibly_damaging(0.689) TCGA-TQ-A7RJ-01 6 33543651 33543651 C T BAK1 Missense_Mutation p.R42H 0.36 deleterious(0.03) benign(0.129) TCGA-TQ-A7RJ-01 7 129357111 129357111 C T NRF1 Missense_Mutation p.T373M 0.05 deleterious(0.05) benign(0.052) TCGA-TQ-A7RJ-01 7 142144060 142144060 C T TRBV6-7 Missense_Mutation p.V9M 0.03 deleterious(0.02) possibly_damaging(0.787) TCGA-TQ-A7RJ-01 8 121823847 121823847 C A SNTB1 Silent p.A79A 0.13 TCGA-TQ-A7RJ-01 8 25261108 25261108 C T DOCK5 Missense_Mutation p.T1654M 0.03 deleterious(0.03) benign(0.294) TCGA-TQ-A7RJ-01 9 129851163 129851163 G A ANGPTL2 3'UTR 0.39 TCGA-TQ-A7RJ-01 9 43920608 43920608 C G CNTNAP3B 3'UTR 0.54 TCGA-TQ-A7RJ-01 X 123019612 123019612 G T XIAP Missense_Mutation p.A34S 0.16 tolerated(0.29) benign(0.052) TCGA-TQ-A7RJ-01 X 125299762 125299762 C T DCAF12L2 Missense_Mutation p.R49H 0.07 tolerated(0.06) benign(0.013) TCGA-TQ-A7RJ-01 X 136113495 136113495 C G GPR101 Silent p.L113L 0.11 TCGA-TQ-A7RJ-01 X 21675338 21675338 C T KLHL34 Missense_Mutation p.R190Q 0.50 tolerated(0.37) benign(0.016) TCGA-TQ-A7RJ-01 X 50136278 50136278 T C DGKK RNA 0.49 TCGA-TQ-A7RJ-01 X 76912144 76912144 C G ATRX Splice_Site p.X1374_splice 0.29 TCGA-TQ-A7RJ-01 X 76938583 76938583 G C ATRX Nonsense_Mutation p.S722* 0.04 TCGA-TQ-A7RK-01 10 45941070 45941072 AAG - ALOX5 In_Frame_Del p.K656del 0.40 TCGA-TQ-A7RK-01 10 81374021 81374021 T C SFTPA1 3'Flank 0.19 TCGA-TQ-A7RK-01 11 51411626 51411626 C G OR4A5 Missense_Mutation p.R257T 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-TQ-A7RK-01 11 56043714 56043714 T C OR5T1 Silent p.S200S 0.42 TCGA-TQ-A7RK-01 12 85623368 85623368 C T LRRIQ1 Silent p.Y1632Y 0.34 TCGA-TQ-A7RK-01 12 88442074 88442076 GTT - C12orf29 In_Frame_Del p.V285del 0.29 TCGA-TQ-A7RK-01 14 31074772 31074772 A T G2E3 Nonsense_Mutation p.K358* 0.38 TCGA-TQ-A7RK-01 17 48917204 48917204 C - WFIKKN2 Frame_Shift_Del p.P187Hfs*41 0.28 TCGA-TQ-A7RK-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.96 deleterious(0) probably_damaging(1) TCGA-TQ-A7RK-01 19 11346350 11346350 G T DOCK6 Silent p.R826R 0.07 TCGA-TQ-A7RK-01 19 14266081 14266081 T C LPHN1 Intron 0.44 TCGA-TQ-A7RK-01 19 15061177 15061177 C T SLC1A6 Missense_Mutation p.V509I 0.33 deleterious(0) probably_damaging(0.984) TCGA-TQ-A7RK-01 19 17038819 17038819 C T CPAMD8 Missense_Mutation p.G1171R 0.39 deleterious(0) probably_damaging(0.999) TCGA-TQ-A7RK-01 19 39789221 39789221 A G IFNL1 3'UTR 0.33 TCGA-TQ-A7RK-01 1 214507477 214507477 A G SMYD2 Intron 0.36 TCGA-TQ-A7RK-01 1 219347210 219347210 C T LYPLAL1 5'UTR 0.43 TCGA-TQ-A7RK-01 1 94651006 94651006 T G ARHGAP29 Silent p.T604T 0.28 TCGA-TQ-A7RK-01 21 45539272 45539272 G A PWP2 Silent p.L352L 0.19 TCGA-TQ-A7RK-01 2 179605461 179605461 G C TTN Missense_Mutation p.L4167V 0.28 TCGA-TQ-A7RK-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-TQ-A7RK-01 2 27804618 27804618 C T C2orf16 Missense_Mutation p.R1727C 0.45 tolerated(0.2) possibly_damaging(0.497) TCGA-TQ-A7RK-01 2 98409857 98409857 C G TMEM131 Splice_Site p.X1182_splice 0.05 TCGA-TQ-A7RK-01 3 156745897 156745897 T C LEKR1 Silent p.S458S 0.40 TCGA-TQ-A7RK-01 3 16411682 16411685 CTGT - RFTN1 Frame_Shift_Del p.T310* 0.33 TCGA-TQ-A7RK-01 3 4452611 4452611 C T SUMF1 Missense_Mutation p.A298T 0.04 deleterious(0.01) possibly_damaging(0.663) TCGA-TQ-A7RK-01 4 152025024 152025026 AAC - RPS3A Intron 0.26 TCGA-TQ-A7RK-01 4 166239115 166239115 T G KLHL2 Missense_Mutation p.Y587D 0.44 deleterious(0.01) probably_damaging(0.983) TCGA-TQ-A7RK-01 4 37592609 37592609 A C C4orf19 Missense_Mutation p.D311A 0.38 deleterious(0) unknown(0) TCGA-TQ-A7RK-01 7 1131651 1131651 T C GPER1 Missense_Mutation p.L96P 0.38 deleterious(0) probably_damaging(0.997) TCGA-TQ-A7RK-01 9 137591840 137591840 C T COL5A1 Silent p.N121N 0.36 TCGA-TQ-A7RK-01 9 37500851 37500851 G A POLR1E Missense_Mutation p.G301R 0.45 deleterious(0.04) benign(0.087) TCGA-TQ-A7RK-01 X 3235706 3235706 C T MXRA5 Missense_Mutation p.E2006K 0.49 deleterious(0.02) benign(0.166) TCGA-TQ-A7RK-01 X 76909614 76909614 G A ATRX Nonsense_Mutation p.Q1431* 0.87 TCGA-TQ-A7RM-01 10 5032181 5032181 C T AKR1C2 3'UTR 0.19 TCGA-TQ-A7RM-01 11 113607355 113607355 C T ZW10 Missense_Mutation p.E736K 0.22 deleterious(0.01) possibly_damaging(0.688) TCGA-TQ-A7RM-01 11 114441697 114441697 C T NXPE4 Missense_Mutation p.G533E 0.19 tolerated(0.49) benign(0.009) TCGA-TQ-A7RM-01 11 124266802 124266802 T A OR8B3 Missense_Mutation p.Y149F 0.16 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-TQ-A7RM-01 11 19076984 19076984 C T MRGPRX2 Silent p.P322P 0.07 TCGA-TQ-A7RM-01 11 6412705 6412705 T C SMPD1 Missense_Mutation p.V137A 0.20 tolerated(0.18) benign(0.028) TCGA-TQ-A7RM-01 11 72300242 72300242 T C PDE2A Missense_Mutation p.I306V 0.49 tolerated(0.15) benign(0.061) TCGA-TQ-A7RM-01 12 120509568 120509568 G A CCDC64 Missense_Mutation p.S351N 0.57 deleterious(0) probably_damaging(0.997) TCGA-TQ-A7RM-01 12 12279789 12279789 G A LRP6 Missense_Mutation p.T1383I 0.18 tolerated(0.97) benign(0.043) TCGA-TQ-A7RM-01 12 30882096 30882096 C A CAPRIN2 Missense_Mutation p.W423L 0.24 deleterious(0) benign(0.264) TCGA-TQ-A7RM-01 12 52695863 52695863 C T KRT86 Missense_Mutation p.R55W 0.34 deleterious(0) possibly_damaging(0.893) TCGA-TQ-A7RM-01 12 57575037 57575037 C T LRP1 Silent p.A1875A 0.33 TCGA-TQ-A7RM-01 13 97485304 97485304 A G HS6ST3 Missense_Mutation p.K423R 0.42 tolerated(1) benign(0.005) TCGA-TQ-A7RM-01 13 99532924 99532924 G A DOCK9 Silent p.Y916Y 0.38 TCGA-TQ-A7RM-01 15 66790129 66790129 C G SNAPC5 5'UTR 0.09 TCGA-TQ-A7RM-01 15 91769716 91769716 C T SV2B Missense_Mutation p.R75W 0.50 deleterious(0) possibly_damaging(0.816) TCGA-TQ-A7RM-01 16 3614464 3614464 G A NLRC3 Silent p.F205F 0.22 TCGA-TQ-A7RM-01 16 49672488 49672488 T C ZNF423 Missense_Mutation p.K192R 0.10 tolerated(0.06) probably_damaging(0.996) TCGA-TQ-A7RM-01 16 9934647 9934647 T G GRIN2A Missense_Mutation p.Q503P 0.19 deleterious(0.02) benign(0.107) TCGA-TQ-A7RM-01 17 10303745 10303745 C A MYH8 Missense_Mutation p.D1233Y 0.26 deleterious(0) probably_damaging(0.971) TCGA-TQ-A7RM-01 17 12888219 12888219 T G ARHGAP44 Missense_Mutation p.S771A 0.04 deleterious_low_confidence(0.02) benign(0.024) TCGA-TQ-A7RM-01 17 27493471 27493471 G A MYO18A Missense_Mutation p.P163L 0.10 deleterious_low_confidence(0) benign(0.206) TCGA-TQ-A7RM-01 17 56274334 56274334 G A EPX Missense_Mutation p.R279H 0.11 tolerated(0.1) benign(0.013) TCGA-TQ-A7RM-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.95 tolerated(0.11) benign(0.308) TCGA-TQ-A7RM-01 18 56202817 56202817 C A ALPK2 Missense_Mutation p.L1534F 0.17 tolerated(0.8) benign(0.002) TCGA-TQ-A7RM-01 18 56367772 56367772 T - MALT1 Frame_Shift_Del p.F200Sfs*39 0.21 TCGA-TQ-A7RM-01 19 18545690 18545690 G T ISYNA1 3'UTR 0.22 TCGA-TQ-A7RM-01 19 18679496 18679496 G - KXD1 3'UTR 0.29 TCGA-TQ-A7RM-01 19 9721559 9721559 T C ZNF561 Missense_Mutation p.K260E 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-TQ-A7RM-01 1 100621829 100621829 G A LRRC39 Silent p.N186N 0.04 TCGA-TQ-A7RM-01 1 149919215 149919215 G A OTUD7B Silent p.V420V 0.46 TCGA-TQ-A7RM-01 1 152777784 152777784 C T LCE1C Silent p.G57G 0.49 TCGA-TQ-A7RM-01 1 16577865 16577865 C T FBXO42 Missense_Mutation p.R485Q 0.47 deleterious_low_confidence(0) benign(0.113) TCGA-TQ-A7RM-01 1 222721259 222721259 G T HHIPL2 Missense_Mutation p.P43H 0.15 deleterious(0) probably_damaging(0.982) TCGA-TQ-A7RM-01 1 247752473 247752473 G A OR2G2 Missense_Mutation p.R271K 0.59 tolerated(0.58) benign(0.002) TCGA-TQ-A7RM-01 1 45223763 45223763 A G KIF2C Missense_Mutation p.K392R 0.44 tolerated(0.27) benign(0.063) TCGA-TQ-A7RM-01 1 57397487 57397487 C T C8B Silent p.R539R 0.22 TCGA-TQ-A7RM-01 1 92941692 92941692 C T GFI1 Missense_Mutation p.R388H 0.47 deleterious(0) probably_damaging(0.999) TCGA-TQ-A7RM-01 20 55108405 55108405 C G FAM209B Missense_Mutation p.T3R 0.13 tolerated(0.05) possibly_damaging(0.683) TCGA-TQ-A7RM-01 22 20073480 20073480 T G DGCR8 5'UTR 0.49 TCGA-TQ-A7RM-01 22 24985856 24985856 T C FAM211B Missense_Mutation p.N80S 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-TQ-A7RM-01 2 160862319 160862319 A T PLA2R1 Missense_Mutation p.F560I 0.37 deleterious(0) probably_damaging(1) TCGA-TQ-A7RM-01 2 179536914 179536914 C A TTN Missense_Mutation p.V11671L 0.13 TCGA-TQ-A7RM-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RM-01 2 27804907 27804907 G A C2orf16 Missense_Mutation p.R1823H 0.41 deleterious(0.04) unknown(0) TCGA-TQ-A7RM-01 3 101232019 101232019 G A SENP7 5'UTR 0.04 TCGA-TQ-A7RM-01 3 46490455 46490455 C T LTF Missense_Mutation p.E371K 0.38 tolerated(1) benign(0.003) TCGA-TQ-A7RM-01 3 47908750 47908750 G A MAP4 Missense_Mutation p.P1018S 0.46 deleterious(0) probably_damaging(1) TCGA-TQ-A7RM-01 4 1343335 1343335 G A UVSSA Missense_Mutation p.R41H 0.22 tolerated(1) benign(0.001) TCGA-TQ-A7RM-01 4 36179548 36179548 A G ARAP2 Silent p.V586V 0.25 TCGA-TQ-A7RM-01 4 47033952 47033952 G A GABRB1 Missense_Mutation p.M34I 0.20 tolerated(0.16) benign(0.009) TCGA-TQ-A7RM-01 4 74702739 74702739 G A CXCL6 Silent p.L56L 0.92 TCGA-TQ-A7RM-01 5 101575025 101575025 A G SLCO4C1 Silent p.N648N 0.15 TCGA-TQ-A7RM-01 5 130726799 130726799 C T CDC42SE2 3'UTR 0.96 TCGA-TQ-A7RM-01 5 1394732 1394732 T C SLC6A3 3'UTR 0.23 TCGA-TQ-A7RM-01 5 38506633 38506633 G A LIFR Missense_Mutation p.R365C 0.47 deleterious(0) probably_damaging(0.995) TCGA-TQ-A7RM-01 6 121769018 121769018 A G GJA1 Missense_Mutation p.Q342R 0.56 tolerated(0.32) benign(0.03) TCGA-TQ-A7RM-01 6 133045014 133045014 G T VNN3 3'UTR 0.11 TCGA-TQ-A7RM-01 6 150387113 150387113 G T ULBP3 Missense_Mutation p.L92M 0.23 tolerated(0.28) probably_damaging(0.98) TCGA-TQ-A7RM-01 6 3850197 3850197 C T FAM50B Missense_Mutation p.A51V 0.07 tolerated(0.09) benign(0.063) TCGA-TQ-A7RM-01 7 128481609 128481609 G A FLNC Silent p.K703K 0.11 TCGA-TQ-A7RM-01 7 148767461 148767461 T C ZNF786 3'UTR 0.74 TCGA-TQ-A7RM-01 7 27856589 27856589 G A TAX1BP1 Missense_Mutation p.V673I 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-TQ-A7RM-01 8 103226348 103226348 G C RRM2B Nonsense_Mutation p.Y241* 0.14 TCGA-TQ-A7RM-01 8 142161887 142161887 C T DENND3 Missense_Mutation p.T262M 0.44 deleterious(0) probably_damaging(0.989) TCGA-TQ-A7RM-01 8 42829299 42829299 G T HOOK3 Missense_Mutation p.R428L 0.03 deleterious(0) benign(0.277) TCGA-TQ-A7RM-01 8 94748635 94748635 C A RBM12B Missense_Mutation p.A2S 0.04 deleterious(0.05) probably_damaging(0.993) TCGA-TQ-A7RM-01 9 125289088 125289088 G A OR1N1 Missense_Mutation p.A162V 0.13 tolerated(0.09) possibly_damaging(0.492) TCGA-TQ-A7RM-01 9 71606159 71606159 C T PIP5K1B Missense_Mutation p.L536F 0.14 tolerated_low_confidence(0.15) benign(0.009) TCGA-TQ-A7RM-01 9 73002695 73002695 C G KLF9 Missense_Mutation p.L244F 0.14 tolerated_low_confidence(0.36) benign(0) TCGA-TQ-A7RM-01 X 109937508 109937508 C A CHRDL1 Nonsense_Mutation p.G221* 0.22 TCGA-TQ-A7RM-01 X 129843238 129843238 C T ENOX2 Missense_Mutation p.V10I 0.14 deleterious_low_confidence(0) benign(0.001) TCGA-TQ-A7RM-01 X 151562951 151562951 G A GABRA3 Intron 0.17 TCGA-TQ-A7RM-01 X 18660259 18660259 C T RS1 Silent p.S180S 0.23 TCGA-TQ-A7RM-01 X 46531996 46531996 A G SLC9A7 Missense_Mutation p.F224L 0.45 tolerated(0.2) benign(0.101) TCGA-TQ-A7RM-01 X 49851213 49851213 C T CLCN5 Missense_Mutation p.R415W 0.45 deleterious(0) possibly_damaging(0.857) TCGA-TQ-A7RM-01 X 64722740 64722740 C T ZC3H12B Missense_Mutation p.P721L 0.49 tolerated(0.5) probably_damaging(0.999) TCGA-TQ-A7RM-01 X 79932815 79932815 G A BRWD3 Missense_Mutation p.R1568W 0.46 deleterious_low_confidence(0) benign(0.446) TCGA-TQ-A7RM-01 X 90691183 90691183 G A PABPC5 Missense_Mutation p.V203I 0.04 tolerated(0.94) benign(0.085) TCGA-TQ-A7RN-01 10 81052021 81052021 G A ZMIZ1 Missense_Mutation p.A289T 0.25 possibly_damaging(0.704) TCGA-TQ-A7RN-01 11 113661671 113661671 G A ATF4P4 RNA 0.52 TCGA-TQ-A7RN-01 11 1216385 1216385 G A MUC5AC RNA 0.25 TCGA-TQ-A7RN-01 11 126135266 126135266 A G SRPR Missense_Mutation p.V403A 0.05 deleterious(0) possibly_damaging(0.849) TCGA-TQ-A7RN-01 11 55579457 55579457 A T OR5L1 Missense_Mutation p.N172I 0.43 deleterious(0) probably_damaging(0.961) TCGA-TQ-A7RN-01 12 6701634 6701634 A C CHD4 Missense_Mutation p.L958R 0.04 deleterious(0) probably_damaging(0.973) TCGA-TQ-A7RN-01 17 48677187 48677187 G A CACNA1G Silent p.L1219L 0.28 TCGA-TQ-A7RN-01 17 7577107 7577107 A C TP53 Missense_Mutation p.C277W 0.51 deleterious(0.03) benign(0.394) TCGA-TQ-A7RN-01 19 35176354 35176354 A G ZNF302 3'UTR 0.06 TCGA-TQ-A7RN-01 19 50167839 50167839 G A IRF3 Intron 0.07 TCGA-TQ-A7RN-01 20 50808180 50808180 G A ZFP64 5'UTR 0.55 TCGA-TQ-A7RN-01 21 15013750 15013750 C A POTED Missense_Mutation p.L540I 0.35 tolerated(1) benign(0.041) TCGA-TQ-A7RN-01 2 152420364 152420364 G A NEB Silent p.A6184A 0.36 TCGA-TQ-A7RN-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RN-01 3 130992408 130992408 C T NEK11 Missense_Mutation p.R570C 0.35 tolerated(0.1) benign(0.026) TCGA-TQ-A7RN-01 3 133670117 133670117 C A SLCO2A1 Missense_Mutation p.A266S 0.47 tolerated(0.35) benign(0.217) TCGA-TQ-A7RN-01 3 1415355 1415355 G C CNTN6 Missense_Mutation p.W618C 0.06 deleterious(0) probably_damaging(1) TCGA-TQ-A7RN-01 3 16475544 16475544 G A RFTN1 Missense_Mutation p.A49V 0.13 deleterious(0.03) benign(0.291) TCGA-TQ-A7RN-01 3 30842415 30842415 C G GADL1 Missense_Mutation p.E406Q 0.36 deleterious(0.01) possibly_damaging(0.837) TCGA-TQ-A7RN-01 3 69056865 69056865 G A EOGT Missense_Mutation p.T140M 0.47 tolerated(0.15) benign(0.006) TCGA-TQ-A7RN-01 4 183714762 183714762 C T TENM3 Silent p.L2313L 0.05 TCGA-TQ-A7RN-01 4 57796227 57796227 G A REST Silent p.K401K 0.03 TCGA-TQ-A7RN-01 4 6578375 6578375 G A MAN2B2 Missense_Mutation p.R70H 0.21 tolerated(0.13) possibly_damaging(0.449) TCGA-TQ-A7RN-01 4 69796351 69796351 G A UGT2A3 Missense_Mutation p.A406V 0.08 deleterious(0.02) benign(0.107) TCGA-TQ-A7RN-01 5 126758455 126758455 G A MEGF10 Missense_Mutation p.G562R 0.45 deleterious(0) probably_damaging(0.999) TCGA-TQ-A7RN-01 5 64948338 64948338 C T TRAPPC13 Missense_Mutation p.P171L 0.24 deleterious(0) probably_damaging(0.999) TCGA-TQ-A7RN-01 5 89949350 89949350 G A GPR98 Missense_Mutation p.R1320H 0.36 benign(0) TCGA-TQ-A7RN-01 6 146125579 146125579 C T FBXO30 Missense_Mutation p.G655S 0.03 deleterious(0) probably_damaging(1) TCGA-TQ-A7RN-01 6 32609784 32609784 G A HLA-DQA1 Missense_Mutation p.V123M 0.16 deleterious(0.01) benign(0.058) TCGA-TQ-A7RN-01 7 128370052 128370052 C T FAM71F1 Missense_Mutation p.S317F 0.03 deleterious(0) probably_damaging(0.998) TCGA-TQ-A7RN-01 7 138832962 138832962 G A TTC26 Missense_Mutation p.A186T 0.08 deleterious(0) probably_damaging(0.981) TCGA-TQ-A7RN-01 7 143140842 143140842 G A TAS2R60 Silent p.Q99Q 0.28 TCGA-TQ-A7RN-01 7 30496653 30496653 C T NOD1 5'UTR 0.29 TCGA-TQ-A7RN-01 7 99688278 99688281 GTGA - COPS6 Splice_Site p.X162_splice 0.49 TCGA-TQ-A7RN-01 9 123732466 123732466 C T C5 Missense_Mutation p.D1382N 0.44 tolerated(0.23) benign(0.016) TCGA-TQ-A7RN-01 X 101138798 101138798 T C ZMAT1 Missense_Mutation p.H534R 0.54 deleterious(0.04) benign(0.048) TCGA-TQ-A7RN-01 X 21627189 21627189 A G CNKSR2 Missense_Mutation p.M716V 0.19 tolerated(1) benign(0.002) TCGA-TQ-A7RN-01 X 53613509 53613509 G A HUWE1 Silent p.L1589L 0.09 TCGA-TQ-A7RO-01 11 17531148 17531148 C T USH1C Missense_Mutation p.A590T 0.22 tolerated_low_confidence(0.86) benign(0) TCGA-TQ-A7RO-01 11 57947747 57947747 C T OR9Q1 Silent p.Y277Y 0.30 TCGA-TQ-A7RO-01 11 6452914 6452914 C T HPX Silent p.A362A 0.42 TCGA-TQ-A7RO-01 11 94038918 94038918 C T FOLR4 Missense_Mutation p.P39L 0.49 deleterious(0.01) probably_damaging(1) TCGA-TQ-A7RO-01 15 40655853 40655853 G A DISP2 Silent p.E49E 0.27 TCGA-TQ-A7RO-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.51 deleterious_low_confidence(0) probably_damaging(1) TCGA-TQ-A7RO-01 16 2258498 2258498 C T MLST8 Missense_Mutation p.T249M 0.03 deleterious(0.01) probably_damaging(0.981) TCGA-TQ-A7RO-01 16 24918463 24918463 G A SLC5A11 Missense_Mutation p.R411Q 0.40 tolerated(0.54) benign(0.023) TCGA-TQ-A7RO-01 17 73814838 73814838 G A UNK Missense_Mutation p.G496D 0.06 deleterious(0.02) probably_damaging(1) TCGA-TQ-A7RO-01 19 42791718 42791718 C T CIC Missense_Mutation p.R202W 0.58 probably_damaging(1) TCGA-TQ-A7RO-01 1 154293680 154293680 C T AQP10 Missense_Mutation p.R17C 0.23 deleterious(0) probably_damaging(0.956) TCGA-TQ-A7RO-01 1 244756809 244756809 G A C1orf101 Silent p.R744R 0.41 TCGA-TQ-A7RO-01 22 31332565 31332565 T C MORC2 Missense_Mutation p.Q495R 0.40 tolerated(0.16) benign(0.174) TCGA-TQ-A7RO-01 22 37414310 37414310 G T TST Missense_Mutation p.A155D 0.33 deleterious(0) probably_damaging(0.999) TCGA-TQ-A7RO-01 2 219878294 219878294 C T CCDC108 Missense_Mutation p.G1265S 0.19 deleterious(0.03) possibly_damaging(0.88) TCGA-TQ-A7RO-01 2 240969331 240969331 G A OR6B2 Silent p.N172N 0.25 TCGA-TQ-A7RO-01 3 135720177 135720177 C T PPP2R3A 5'UTR 0.33 TCGA-TQ-A7RO-01 3 138724449 138724449 C T PRR23A Missense_Mutation p.R221H 0.48 tolerated(1) benign(0.001) TCGA-TQ-A7RO-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.31 tolerated(0.11) possibly_damaging(0.529) TCGA-TQ-A7RO-01 5 59284439 59284439 G A PDE4D Missense_Mutation p.P50S 0.35 deleterious_low_confidence(0) benign(0.048) TCGA-TQ-A7RO-01 5 64892881 64892881 T C TRIM23 Missense_Mutation p.I436V 0.27 tolerated(0.13) benign(0.426) TCGA-TQ-A7RO-01 7 149485858 149485858 A G SSPO RNA 0.33 TCGA-TQ-A7RO-01 7 44180912 44180912 G A MYL7 5'UTR 0.21 TCGA-TQ-A7RO-01 8 30946435 30946435 C G WRN Missense_Mutation p.Q536E 0.40 tolerated(0.11) benign(0.056) TCGA-TQ-A7RO-01 8 72968063 72968063 C T TRPA1 Missense_Mutation p.D408N 0.45 deleterious(0.03) probably_damaging(0.958) TCGA-TQ-A7RO-01 9 35720836 35720836 G A TLN1 Silent p.A393A 0.19 TCGA-TQ-A7RP-01 10 45473358 45473358 C T C10orf10 Missense_Mutation p.V41M 0.10 deleterious(0) probably_damaging(0.938) TCGA-TQ-A7RP-01 10 89717741 89717741 G T PTEN Nonsense_Mutation p.E256* 0.19 TCGA-TQ-A7RP-01 11 102233628 102233628 T A BIRC2 Missense_Mutation p.C333S 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-TQ-A7RP-01 11 2416679 2416679 G A CD81 Missense_Mutation p.A130T 0.18 tolerated(1) possibly_damaging(0.803) TCGA-TQ-A7RP-01 11 56020078 56020078 G T OR5T3 Missense_Mutation p.V135F 0.06 deleterious(0.05) benign(0.068) TCGA-TQ-A7RP-01 11 60064771 60064771 C T MS4A4A Silent p.I101I 0.05 TCGA-TQ-A7RP-01 12 46320546 46320546 C T SCAF11 Missense_Mutation p.G980R 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-TQ-A7RP-01 12 93881384 93881384 C A MRPL42 Missense_Mutation p.Q111K 0.05 tolerated(0.16) benign(0.026) TCGA-TQ-A7RP-01 13 29004260 29004260 C A FLT1 Nonsense_Mutation p.E345* 0.12 TCGA-TQ-A7RP-01 15 74659800 74659800 G A CYP11A1 Missense_Mutation p.R43C 0.13 deleterious(0.04) possibly_damaging(0.586) TCGA-TQ-A7RP-01 16 66956164 66956164 C T RRAD Missense_Mutation p.V248M 0.16 deleterious(0.03) probably_damaging(0.985) TCGA-TQ-A7RP-01 16 90130121 90130121 G A PRDM7 Missense_Mutation p.T136M 0.15 deleterious(0.03) benign(0.227) TCGA-TQ-A7RP-01 17 29586111 29586111 A G NF1 Missense_Mutation p.N1465S 0.12 tolerated(0.06) benign(0.108) TCGA-TQ-A7RP-01 17 7405004 7405004 A G POLR2A Missense_Mutation p.M769V 0.07 probably_damaging(0.999) TCGA-TQ-A7RP-01 18 61602098 61602098 G C SERPINB10 Missense_Mutation p.K272N 0.08 tolerated(0.15) benign(0.094) TCGA-TQ-A7RP-01 19 36145573 36145573 G A COX6B1 Nonsense_Mutation p.W69* 0.07 TCGA-TQ-A7RP-01 19 40095888 40095888 C T LGALS13 Nonsense_Mutation p.R55* 0.12 TCGA-TQ-A7RP-01 19 56552353 56552353 G A NLRP5 Missense_Mutation p.R951Q 0.08 tolerated(1) benign(0.004) TCGA-TQ-A7RP-01 19 757280 757280 C T MISP Missense_Mutation p.R112C 0.14 tolerated(0.19) benign(0) TCGA-TQ-A7RP-01 1 12908038 12908038 C T HNRNPCL1 Silent p.A35A 0.04 TCGA-TQ-A7RP-01 1 233518415 233518415 C T MLK4 Silent p.S1023S 0.07 TCGA-TQ-A7RP-01 1 237729966 237729966 T C RYR2 Missense_Mutation p.F1105S 0.13 possibly_damaging(0.816) TCGA-TQ-A7RP-01 20 2621836 2621836 C T TMC2 Missense_Mutation p.P854S 0.09 tolerated(0.19) benign(0.001) TCGA-TQ-A7RP-01 21 45949682 45949682 A T TSPEAR Nonsense_Mutation p.Y263* 0.18 TCGA-TQ-A7RP-01 21 45949706 45949706 A G TSPEAR Silent p.D255D 0.17 TCGA-TQ-A7RP-01 2 209027942 209027942 G A CRYGA Missense_Mutation p.R80C 0.14 tolerated(0.1) benign(0.062) TCGA-TQ-A7RP-01 2 39234309 39234309 C T SOS1 Missense_Mutation p.E846K 0.09 deleterious(0.01) probably_damaging(0.925) TCGA-TQ-A7RP-01 3 118935161 118935161 C T B4GALT4 Silent p.R276R 0.12 TCGA-TQ-A7RP-01 3 132207208 132207208 G A DNAJC13 Missense_Mutation p.D1112N 0.16 deleterious(0) possibly_damaging(0.799) TCGA-TQ-A7RP-01 3 194154513 194154513 C T ATP13A3 Missense_Mutation p.V745I 0.13 deleterious(0.04) possibly_damaging(0.694) TCGA-TQ-A7RP-01 3 4355487 4355488 - G SETMAR Intron 0.14 TCGA-TQ-A7RP-01 3 54615867 54615867 A G CACNA2D3 Missense_Mutation p.N309S 0.08 tolerated(0.05) probably_damaging(0.983) TCGA-TQ-A7RP-01 4 11401216 11401216 C T HS3ST1 Silent p.P138P 0.10 TCGA-TQ-A7RP-01 4 74607730 74607730 G T IL8 Missense_Mutation p.V89L 0.06 tolerated(0.13) benign(0.083) TCGA-TQ-A7RP-01 4 8218826 8218826 G A SH3TC1 Silent p.P257P 0.19 TCGA-TQ-A7RP-01 4 91549203 91549203 C T CCSER1 Silent p.D584D 0.11 TCGA-TQ-A7RP-01 5 5242305 5242305 G A ADAMTS16 Splice_Site p.X888_splice 0.12 TCGA-TQ-A7RP-01 6 31691585 31691585 C A C6orf25 Silent p.L77L 0.06 TCGA-TQ-A7RP-01 6 7579661 7579661 G A DSP Missense_Mutation p.E1080K 0.06 probably_damaging(0.991) TCGA-TQ-A7RP-01 7 100610076 100610076 C G MUC3A Missense_Mutation p.A854G 0.05 deleterious(0.01) probably_damaging(0.934) TCGA-TQ-A7RP-01 7 150779522 150779522 C T TMUB1 Silent p.P43P 0.19 TCGA-TQ-A7RP-01 7 44323782 44323782 G A CAMK2B Silent p.T36T 0.09 TCGA-TQ-A7RP-01 7 45007262 45007262 G A MYO1G Missense_Mutation p.T575M 0.15 deleterious(0) probably_damaging(1) TCGA-TQ-A7RP-01 7 55221710 55221710 C T EGFR Missense_Mutation p.R252C 0.07 deleterious(0.03) possibly_damaging(0.899) TCGA-TQ-A7RP-01 8 52746176 52746176 G A PCMTD1 Nonsense_Mutation p.R162* 0.08 TCGA-TQ-A7RP-01 8 68956801 68956801 G A PREX2 Missense_Mutation p.V307M 0.09 deleterious(0) probably_damaging(0.996) TCGA-TQ-A7RP-01 9 135939834 135939834 A G CEL Missense_Mutation p.N40S 0.09 tolerated(0.17) benign(0.288) TCGA-TQ-A7RP-01 9 27565531 27565531 G A C9orf72 Nonsense_Mutation p.Q168* 0.10 TCGA-TQ-A7RP-01 9 80046294 80046294 C G GNA14 Missense_Mutation p.R179P 0.24 deleterious(0) benign(0.393) TCGA-TQ-A7RP-01 9 96859862 96859862 C T PTPDC1 Silent p.H336H 0.09 TCGA-TQ-A7RP-01 X 125298843 125298843 C T DCAF12L2 Silent p.S355S 0.14 TCGA-TQ-A7RP-01 X 22095783 22095783 C A PHEX Missense_Mutation p.S209Y 0.11 tolerated(0.06) probably_damaging(0.915) TCGA-TQ-A7RP-01 X 3240937 3240937 A T MXRA5 Missense_Mutation p.V930D 0.28 tolerated(0.13) benign(0.084) TCGA-TQ-A7RQ-01 10 114057887 114057887 C T TECTB Silent p.F244F 0.38 TCGA-TQ-A7RQ-01 14 93483148 93483148 T C ITPK1 Splice_Site p.X41_splice 0.30 TCGA-TQ-A7RQ-01 15 33840366 33840366 G A RYR3 Missense_Mutation p.R259Q 0.12 benign(0.36) TCGA-TQ-A7RQ-01 15 40257951 40257951 C T EIF2AK4 Silent p.V308V 0.47 TCGA-TQ-A7RQ-01 16 67235520 67235520 G A ELMO3 Missense_Mutation p.R351Q 0.14 tolerated(0.2) benign(0.033) TCGA-TQ-A7RQ-01 17 29325786 29325786 G A RNF135 Nonsense_Mutation p.W292* 0.06 TCGA-TQ-A7RQ-01 17 37922280 37922280 C T IKZF3 Silent p.P431P 0.07 TCGA-TQ-A7RQ-01 19 24310731 24310731 G A ZNF254 Silent p.S643S 0.08 TCGA-TQ-A7RQ-01 19 313566 313566 C T MIER2 Missense_Mutation p.A245T 0.07 tolerated(0.23) probably_damaging(0.995) TCGA-TQ-A7RQ-01 19 42795426 42795450 CTTCAGGTGGCACCTGCCCCAGCAC - CIC Frame_Shift_Del p.L836Qfs*80 0.86 TCGA-TQ-A7RQ-01 19 8587611 8587611 G A MYO1F Missense_Mutation p.S986F 0.47 tolerated(0.1) benign(0.001) TCGA-TQ-A7RQ-01 1 160063551 160063551 G T IGSF8 Missense_Mutation p.Q285K 0.06 tolerated(1) possibly_damaging(0.633) TCGA-TQ-A7RQ-01 1 201958650 201958650 T C RNPEP Missense_Mutation p.V243A 0.08 deleterious(0) possibly_damaging(0.852) TCGA-TQ-A7RQ-01 1 202097072 202097080 CACCATGGG - GPR37L1 In_Frame_Del p.M280_T282del 0.49 TCGA-TQ-A7RQ-01 22 18778610 18778610 G A GGT3P RNA 0.38 TCGA-TQ-A7RQ-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RQ-01 2 223158757 223158757 C T PAX3 Intron 0.10 TCGA-TQ-A7RQ-01 2 231682512 231682512 T C CAB39 Missense_Mutation p.M246T 0.48 deleterious(0) probably_damaging(0.992) TCGA-TQ-A7RQ-01 2 277249 277249 C T ACP1 Missense_Mutation p.T141M 0.41 tolerated(0.06) benign(0.304) TCGA-TQ-A7RQ-01 2 38978496 38978496 G A SRSF7 5'UTR 0.55 TCGA-TQ-A7RQ-01 3 13379356 13379356 C T NUP210 Missense_Mutation p.R1178Q 0.24 deleterious(0.03) possibly_damaging(0.849) TCGA-TQ-A7RQ-01 3 42448742 42448742 A G LYZL4 Translation_Start_Site p.M1? 0.07 deleterious(0) probably_damaging(0.916) TCGA-TQ-A7RQ-01 3 42594904 42594904 T C SEC22C Missense_Mutation p.M250V 0.38 tolerated(1) benign(0) TCGA-TQ-A7RQ-01 4 100197683 100197683 G A ADH1A 3'UTR 0.07 TCGA-TQ-A7RQ-01 4 151792590 151792590 G A LRBA Silent p.V758V 0.20 TCGA-TQ-A7RQ-01 5 127520188 127520188 A C SLC12A2 Missense_Mutation p.T1144P 0.06 tolerated(0.26) benign(0.391) TCGA-TQ-A7RQ-01 5 428114 428114 G T AHRR Missense_Mutation p.D323Y 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-TQ-A7RQ-01 6 13365582 13365582 C T GFOD1 Missense_Mutation p.G189D 0.07 tolerated(0.14) benign(0.064) TCGA-TQ-A7RQ-01 6 87968903 87968903 C - ZNF292 Frame_Shift_Del p.L1853Yfs*10 0.27 TCGA-TQ-A7RQ-01 7 128478760 128478760 C T FLNC Silent p.C438C 0.04 TCGA-TQ-A7RQ-01 8 145763155 145763155 T C ARHGAP39 Missense_Mutation p.K855R 0.26 tolerated(0.07) benign(0.196) TCGA-TQ-A7RQ-01 8 6793374 6793374 G T DEFA4 3'UTR 0.08 TCGA-TQ-A7RQ-01 X 104984645 104984645 A C IL1RAPL2 Missense_Mutation p.N337H 0.07 tolerated(0.12) benign(0.168) TCGA-TQ-A7RQ-01 X 136113803 136113803 C T GPR101 Missense_Mutation p.E11K 0.32 tolerated_low_confidence(0.08) benign(0.165) TCGA-TQ-A7RQ-01 X 15268608 15268608 A T ASB9 Missense_Mutation p.L171H 0.03 deleterious(0) probably_damaging(1) TCGA-TQ-A7RQ-01 X 153608123 153608123 C T EMD Silent p.S52S 0.43 TCGA-TQ-A7RQ-01 X 39922919 39922919 C A BCOR Missense_Mutation p.E1263D 0.42 tolerated(0.07) probably_damaging(0.989) TCGA-TQ-A7RQ-01 X 54783460 54783460 G A ITIH6 Missense_Mutation p.S1016F 0.15 deleterious(0.02) possibly_damaging(0.507) TCGA-TQ-A7RQ-01 X 72667179 72667179 C T CDX4 Silent p.G30G 0.43 TCGA-TQ-A7RR-01 10 99160934 99160934 T C RRP12 Missense_Mutation p.K19E 0.33 deleterious(0.02) benign(0.206) TCGA-TQ-A7RR-01 11 10787958 10787958 G A CTR9 Missense_Mutation p.R536H 0.24 deleterious(0) probably_damaging(0.995) TCGA-TQ-A7RR-01 11 64939753 64939753 G A SPDYC Missense_Mutation p.A99T 0.10 deleterious(0.03) probably_damaging(0.964) TCGA-TQ-A7RR-01 12 120599825 120599825 G A GCN1L1 Missense_Mutation p.S734L 0.08 benign(0.003) TCGA-TQ-A7RR-01 12 97885714 97885714 T C MIR1251 RNA 0.61 TCGA-TQ-A7RR-01 14 24707597 24707597 C T GMPR2 Silent p.G299G 0.11 TCGA-TQ-A7RR-01 15 41145414 41145414 C T SPINT1 Missense_Mutation p.R190C 0.05 tolerated(0.06) benign(0.339) TCGA-TQ-A7RR-01 16 66997082 66997082 G A CES3 Missense_Mutation p.G28E 0.16 tolerated(0.05) possibly_damaging(0.463) TCGA-TQ-A7RR-01 17 35896092 35896092 C T SYNRG Missense_Mutation p.A1219T 0.14 tolerated(0.07) benign(0.061) TCGA-TQ-A7RR-01 17 62817988 62817988 G A RNU7-115P 3'Flank 0.09 TCGA-TQ-A7RR-01 17 72943529 72943529 C A OTOP3 Missense_Mutation p.L527I 0.21 deleterious(0) possibly_damaging(0.805) TCGA-TQ-A7RR-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.33 deleterious(0) probably_damaging(0.998) TCGA-TQ-A7RR-01 17 7577572 7577572 T C TP53 Missense_Mutation p.M237V 0.33 deleterious(0) probably_damaging(0.995) TCGA-TQ-A7RR-01 19 2933587 2933587 G A ZNF77 Missense_Mutation p.T513M 0.04 tolerated(0.34) benign(0.153) TCGA-TQ-A7RR-01 1 197881646 197881646 T C LHX9 5'Flank 0.17 TCGA-TQ-A7RR-01 1 220345393 220345393 T C RAB3GAP2 Splice_Site p.X806_splice 0.07 TCGA-TQ-A7RR-01 1 248367166 248367166 G A OR2M3 Missense_Mutation p.R266H 0.33 tolerated(0.95) benign(0.012) TCGA-TQ-A7RR-01 20 23017160 23017160 A G SSTR4 Missense_Mutation p.Y347C 0.21 tolerated(0.2) benign(0.003) TCGA-TQ-A7RR-01 20 45002149 45002149 G A ELMO2 Silent p.H435H 0.19 TCGA-TQ-A7RR-01 21 41033275 41033275 G A B3GALT5 Silent p.Q263Q 0.06 TCGA-TQ-A7RR-01 2 179575583 179575583 G A TTN Missense_Mutation p.A9414V 0.16 TCGA-TQ-A7RR-01 2 192214945 192214945 A C MYO1B Missense_Mutation p.S186R 0.28 deleterious(0.04) benign(0.101) TCGA-TQ-A7RR-01 2 204821450 204821450 A G ICOS Missense_Mutation p.I155V 0.06 tolerated(0.5) benign(0.008) TCGA-TQ-A7RR-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RR-01 2 21229828 21229828 C T APOB Silent p.L3304L 0.23 TCGA-TQ-A7RR-01 2 227872039 227872039 C A COL4A4 3'UTR 0.14 TCGA-TQ-A7RR-01 2 71058171 71058171 G A CD207 3'UTR 0.29 TCGA-TQ-A7RR-01 3 113082076 113082076 C T WDR52 Silent p.E950E 0.14 TCGA-TQ-A7RR-01 3 128060266 128060266 G - EEFSEC Frame_Shift_Del p.L329Cfs*20 0.23 TCGA-TQ-A7RR-01 3 134070869 134070869 C T AMOTL2 3'Flank 0.05 TCGA-TQ-A7RR-01 3 46940298 46940298 G A PTH1R Missense_Mutation p.R262H 0.17 tolerated(0.22) benign(0.005) TCGA-TQ-A7RR-01 4 162680611 162680611 A G FSTL5 Missense_Mutation p.F227L 0.16 tolerated(0.14) benign(0) TCGA-TQ-A7RR-01 4 69334631 69334631 A G TMPRSS11E Missense_Mutation p.E98G 0.32 tolerated(0.58) benign(0) TCGA-TQ-A7RR-01 5 111091466 111091483 CCATTTTGAGAATCTTAG - NREP Intron 0.25 TCGA-TQ-A7RR-01 5 115327923 115327923 A G AQPEP Silent p.T403T 0.04 TCGA-TQ-A7RR-01 5 178373365 178373365 G A ZNF454 Silent p.S13S 0.28 TCGA-TQ-A7RR-01 6 123038935 123038935 T C PKIB Missense_Mutation p.V6A 0.33 tolerated_low_confidence(0.44) benign(0) TCGA-TQ-A7RR-01 8 26227969 26227969 T C PPP2R2A 3'UTR 0.16 TCGA-TQ-A7RR-01 9 133779457 133779469 GTCCTCCCGGACC - FIBCD1 Frame_Shift_Del p.V457Afs*79 0.28 TCGA-TQ-A7RR-01 X 76938484 76938484 T - ATRX Frame_Shift_Del p.N755Mfs*13 0.44 TCGA-TQ-A7RS-01 10 1149739 1149739 C T WDR37 Silent p.Y308Y 0.44 TCGA-TQ-A7RS-01 10 24833288 24833289 AG - KIAA1217 Frame_Shift_Del p.D1698Ffs*22 0.16 TCGA-TQ-A7RS-01 11 118133674 118133674 C T MPZL2 Missense_Mutation p.R66H 0.43 deleterious(0) probably_damaging(0.965) TCGA-TQ-A7RS-01 12 66909479 66909479 G A GRIP1 Missense_Mutation p.T215M 0.27 deleterious(0) probably_damaging(0.969) TCGA-TQ-A7RS-01 14 38061654 38061654 C T FOXA1 Missense_Mutation p.G112D 0.08 tolerated(0.43) possibly_damaging(0.698) TCGA-TQ-A7RS-01 18 61306946 61306946 G A SERPINB4 Silent p.N178N 0.41 TCGA-TQ-A7RS-01 19 38991258 38991258 G A RYR1 Missense_Mutation p.G2446S 0.44 benign(0.034) TCGA-TQ-A7RS-01 19 42791718 42791718 C T CIC Missense_Mutation p.R202W 0.16 probably_damaging(1) TCGA-TQ-A7RS-01 19 42791806 42791806 G T CIC Missense_Mutation p.S231I 0.52 probably_damaging(0.999) TCGA-TQ-A7RS-01 19 56370141 56370141 C T NLRP4 Missense_Mutation p.A461V 0.19 deleterious(0.04) probably_damaging(0.948) TCGA-TQ-A7RS-01 2 103141552 103141552 C T SLC9A4 Missense_Mutation p.R630C 0.42 deleterious(0.01) possibly_damaging(0.858) TCGA-TQ-A7RS-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RS-01 2 234112925 234112925 G A INPP5D Silent p.P1031P 0.49 TCGA-TQ-A7RS-01 3 116163760 116163760 T C LSAMP Missense_Mutation p.N40S 0.09 tolerated(0.15) benign(0.062) TCGA-TQ-A7RS-01 3 58368278 58368278 T C PXK Missense_Mutation p.L80S 0.09 deleterious(0) probably_damaging(0.968) TCGA-TQ-A7RS-01 3 69230684 69230684 C T FRMD4B Silent p.E739E 0.30 TCGA-TQ-A7RS-01 4 55133872 55133872 A C PDGFRA Missense_Mutation p.E362A 0.11 deleterious(0.01) probably_damaging(1) TCGA-TQ-A7RS-01 5 127674745 127674745 C A FBN2 Nonsense_Mutation p.E1118* 0.06 TCGA-TQ-A7RS-01 6 26046072 26046072 G C HIST1H3C 3'UTR 0.46 TCGA-TQ-A7RS-01 6 41059406 41059407 - GTGGTCAA NFYA Frame_Shift_Ins p.N232Kfs*10 0.29 TCGA-TQ-A7RS-01 X 109561295 109561295 G A AMMECR1 Missense_Mutation p.A2V 0.29 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-TQ-A7RU-01 11 86662454 86662454 T C FZD4 Silent p.A448A 0.28 TCGA-TQ-A7RU-01 12 21353502 21353502 T G SLCO1B1 Missense_Mutation p.L344W 0.47 tolerated(0.16) possibly_damaging(0.895) TCGA-TQ-A7RU-01 13 53624470 53624470 A T OLFM4 Missense_Mutation p.N366I 0.46 deleterious(0.03) possibly_damaging(0.515) TCGA-TQ-A7RU-01 14 50626681 50626681 A T SOS2 Missense_Mutation p.N440K 0.41 deleterious(0.01) benign(0.127) TCGA-TQ-A7RU-01 15 75687040 75687040 A G SIN3A Missense_Mutation p.I753T 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-TQ-A7RU-01 17 4862823 4862823 G A SPAG7 3'UTR 0.48 TCGA-TQ-A7RU-01 17 7826851 7826851 G A KCNAB3 Missense_Mutation p.R354C 0.17 deleterious(0) probably_damaging(0.968) TCGA-TQ-A7RU-01 19 16178536 16178536 C T TPM4 Silent p.D34D 0.38 TCGA-TQ-A7RU-01 19 42791715 42791715 C T CIC Missense_Mutation p.R201W 0.13 probably_damaging(1) TCGA-TQ-A7RU-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.60 probably_damaging(1) TCGA-TQ-A7RU-01 1 144931786 144931786 C G PDE4DIP Intron 0.36 TCGA-TQ-A7RU-01 1 207307914 207307914 C T C4BPA Missense_Mutation p.P417L 0.12 deleterious(0.02) benign(0.401) TCGA-TQ-A7RU-01 20 49354410 49354410 G A PARD6B Missense_Mutation p.R28H 0.32 deleterious(0) probably_damaging(0.957) TCGA-TQ-A7RU-01 20 61430826 61430826 G A MRGBP Missense_Mutation p.S149N 0.49 tolerated(0.6) probably_damaging(0.932) TCGA-TQ-A7RU-01 22 41863526 41863526 G A PHF5A Missense_Mutation p.R57C 0.35 deleterious(0) probably_damaging(0.971) TCGA-TQ-A7RU-01 2 196619149 196619149 G A DNAH7 Silent p.Y3892Y 0.48 TCGA-TQ-A7RU-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RU-01 2 86073608 86073608 G A ST3GAL5 Silent p.G247G 0.36 TCGA-TQ-A7RU-01 3 140178466 140178466 C T CLSTN2 Silent p.D359D 0.13 TCGA-TQ-A7RU-01 3 142389859 142389859 G C PLS1 Missense_Mutation p.D87H 0.51 tolerated(0.07) benign(0.003) TCGA-TQ-A7RU-01 4 170428869 170428869 C A NEK1 Silent p.L636L 0.23 TCGA-TQ-A7RU-01 4 48835438 48835438 C T OCIAD1 Missense_Mutation p.P27S 0.30 deleterious(0) probably_damaging(0.995) TCGA-TQ-A7RU-01 5 36184025 36184025 C T SKP2 3'UTR 0.06 TCGA-TQ-A7RU-01 6 111710363 111710363 G A REV3L Nonsense_Mutation p.Q270* 0.32 TCGA-TQ-A7RU-01 6 33635015 33635015 G A ITPR3 Missense_Mutation p.R554H 0.14 deleterious(0.03) probably_damaging(0.934) TCGA-TQ-A7RU-01 6 37613989 37613989 T C MDGA1 Missense_Mutation p.I737V 0.45 deleterious(0.05) possibly_damaging(0.891) TCGA-TQ-A7RU-01 6 46656880 46656880 C T TDRD6 Missense_Mutation p.R339C 0.38 deleterious(0.04) benign(0.187) TCGA-TQ-A7RU-01 6 97052768 97052768 A G FHL5 Missense_Mutation p.K101R 0.46 tolerated(0.76) benign(0.037) TCGA-TQ-A7RU-01 7 100320317 100320317 G T EPO Missense_Mutation p.G93C 0.26 deleterious(0) probably_damaging(1) TCGA-TQ-A7RU-01 8 120079533 120079533 G T COLEC10 Missense_Mutation p.A5S 0.42 tolerated_low_confidence(0.57) benign(0) TCGA-TQ-A7RU-01 8 72942140 72942140 A G TRPA1 Missense_Mutation p.M978T 0.33 deleterious(0) probably_damaging(0.989) TCGA-TQ-A7RU-01 8 74891077 74891077 T G TMEM70 Missense_Mutation p.N99K 0.47 deleterious(0) benign(0.276) TCGA-TQ-A7RU-01 8 87229959 87229959 T C SLC7A13 Missense_Mutation p.I307V 0.08 tolerated(1) benign(0.015) TCGA-TQ-A7RU-01 9 21994137 21994137 C T RP11-149I2.4 5'Flank 0.27 TCGA-TQ-A7RU-01 9 4118080 4118080 C T GLIS3 Silent p.A466A 0.10 TCGA-TQ-A7RU-01 9 72723223 72723223 G A MAMDC2 Missense_Mutation p.R82H 0.13 deleterious(0) probably_damaging(0.991) TCGA-TQ-A7RU-01 X 152770284 152770284 C T BGN Silent p.F65F 0.95 TCGA-TQ-A7RV-01 10 13222503 13222503 C G MCM10 Missense_Mutation p.L277V 0.21 tolerated(0.08) possibly_damaging(0.902) TCGA-TQ-A7RV-01 10 82280174 82280174 C T TSPAN14 3'UTR 0.31 TCGA-TQ-A7RV-01 14 107283098 107283098 T A IGHV7-81 Splice_Site p.X16_splice 0.22 TCGA-TQ-A7RV-01 14 23072942 23072942 C T ABHD4 Missense_Mutation p.R200C 0.08 deleterious(0.01) probably_damaging(0.935) TCGA-TQ-A7RV-01 16 81142879 81142879 T C RNU6-1191P 5'Flank 0.21 TCGA-TQ-A7RV-01 16 89799951 89799951 G A ZNF276 Missense_Mutation p.A448T 0.31 tolerated(0.05) probably_damaging(0.982) TCGA-TQ-A7RV-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.21 deleterious(0) probably_damaging(0.998) TCGA-TQ-A7RV-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.53 deleterious(0) probably_damaging(1) TCGA-TQ-A7RV-01 19 11141499 11141499 G A SMARCA4 Missense_Mutation p.G1159E 0.17 probably_damaging(1) TCGA-TQ-A7RV-01 19 12969474 12969474 C T MAST1 Silent p.A429A 0.30 TCGA-TQ-A7RV-01 1 32740031 32740031 G A LCK Missense_Mutation p.G34D 0.30 tolerated(0.65) benign(0) TCGA-TQ-A7RV-01 2 105924248 105924248 G C TGFBRAP1 Missense_Mutation p.L171V 0.31 tolerated(0.64) benign(0.006) TCGA-TQ-A7RV-01 2 189864272 189864272 G T COL3A1 Missense_Mutation p.G733V 0.22 unknown(0) TCGA-TQ-A7RV-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RV-01 2 239237837 239237837 A - TRAF3IP1 Frame_Shift_Del p.E258Rfs*5 0.24 TCGA-TQ-A7RV-01 2 242003086 242003086 T C SNED1 Silent p.P818P 0.15 TCGA-TQ-A7RV-01 2 56103869 56103869 C T EFEMP1 Missense_Mutation p.E257K 0.37 deleterious(0) probably_damaging(0.999) TCGA-TQ-A7RV-01 2 65245298 65245298 C T SLC1A4 Silent p.T376T 0.47 TCGA-TQ-A7RV-01 2 86509292 86509292 C T REEP1 Splice_Site p.X42_splice 0.33 TCGA-TQ-A7RV-01 3 114070470 114070478 TGCACTGAC - ZBTB20 In_Frame_Del p.S150_Q152del 0.13 TCGA-TQ-A7RV-01 4 38907402 38907402 C T FAM114A1 Missense_Mutation p.P193S 0.06 tolerated(0.61) benign(0.034) TCGA-TQ-A7RV-01 5 140308830 140308830 A T PCDHAC1 Missense_Mutation p.T785S 0.05 tolerated(0.48) benign(0.001) TCGA-TQ-A7RV-01 5 140810561 140810561 C T PCDHGA12 Missense_Mutation p.P79S 0.08 deleterious_low_confidence(0.04) benign(0.12) TCGA-TQ-A7RV-01 5 36141229 36141229 C T LMBRD2 Nonsense_Mutation p.W116* 0.05 TCGA-TQ-A7RV-01 7 128655167 128655169 AAG - TNPO3 In_Frame_Del p.S139del 0.12 TCGA-TQ-A7RV-01 7 87072723 87072723 T C ABCB4 Missense_Mutation p.Q423R 0.26 deleterious(0) possibly_damaging(0.806) TCGA-TQ-A7RV-01 8 144895057 144895057 G T SCRIB Silent p.L239L 0.09 TCGA-TQ-A7RV-01 8 30701411 30701411 C T TEX15 Missense_Mutation p.R1708K 0.06 deleterious(0.02) probably_damaging(0.996) TCGA-TQ-A7RV-01 8 42612159 42612159 G A CHRNA6 Missense_Mutation p.R96C 0.05 deleterious(0.03) benign(0.069) TCGA-TQ-A7RV-01 X 76938182 76938183 TG - ATRX Frame_Shift_Del p.H855Qfs*7 0.31 TCGA-TQ-A7RV-01 X 84526116 84526117 AT - ZNF711 Frame_Shift_Del p.M524Efs*6 0.11 TCGA-TQ-A7RW-01 10 105780333 105780333 C T SLK Nonsense_Mutation p.Q1137* 0.04 TCGA-TQ-A7RW-01 10 24498066 24498066 T C KIAA1217 5'Flank 0.21 TCGA-TQ-A7RW-01 10 61564269 61564269 A C CCDC6 Missense_Mutation p.N338K 0.37 deleterious(0) probably_damaging(0.963) TCGA-TQ-A7RW-01 10 71008233 71008233 T A HKDC1 Missense_Mutation p.V440D 0.05 deleterious(0) probably_damaging(0.997) TCGA-TQ-A7RW-01 10 72298051 72298051 G A PALD1 Missense_Mutation p.A447T 0.08 tolerated(0.16) benign(0.237) TCGA-TQ-A7RW-01 10 78649254 78649254 C T KCNMA1 Missense_Mutation p.R1122Q 0.04 deleterious(0) probably_damaging(1) TCGA-TQ-A7RW-01 11 107944162 107944162 T C CUL5 Missense_Mutation p.F351L 0.09 deleterious(0.04) possibly_damaging(0.823) TCGA-TQ-A7RW-01 11 59807955 59807955 T C OOSP2 Missense_Mutation p.L8P 0.32 deleterious(0.01) unknown(0) TCGA-TQ-A7RW-01 11 77649841 77649841 C G INTS4 Missense_Mutation p.E341Q 0.03 deleterious(0.02) possibly_damaging(0.848) TCGA-TQ-A7RW-01 11 93797642 93797642 A G HEPHL1 Silent p.K258K 0.06 TCGA-TQ-A7RW-01 12 124132661 124132661 C T GTF2H3 Silent p.L118L 0.35 TCGA-TQ-A7RW-01 12 21919155 21919155 A T KCNJ8 Silent p.I259I 0.24 TCGA-TQ-A7RW-01 12 4735974 4735975 - CTTGTCATCTCCCAG AKAP3 In_Frame_Ins p.D698_K699insWEMTS 0.10 TCGA-TQ-A7RW-01 12 56118162 56118162 G A RDH5 Missense_Mutation p.V264M 0.06 deleterious(0) probably_damaging(0.999) TCGA-TQ-A7RW-01 12 70194027 70194027 G A RAB3IP Silent p.K325K 0.30 TCGA-TQ-A7RW-01 12 91545525 91545525 G C DCN Missense_Mutation p.S264C 0.36 deleterious(0) probably_damaging(0.989) TCGA-TQ-A7RW-01 13 113742083 113742083 C T MCF2L Silent p.Y886Y 0.21 TCGA-TQ-A7RW-01 14 21971545 21971545 C T METTL3 Missense_Mutation p.G165D 0.27 tolerated(0.58) benign(0.003) TCGA-TQ-A7RW-01 14 53248533 53248533 A G GNPNAT1 Missense_Mutation p.I105T 0.07 tolerated(0.22) possibly_damaging(0.461) TCGA-TQ-A7RW-01 14 59113311 59113311 C T DACT1 Missense_Mutation p.A657V 0.22 tolerated(0.52) benign(0.01) TCGA-TQ-A7RW-01 14 64682926 64682926 T C SYNE2 Intron 0.11 TCGA-TQ-A7RW-01 14 75553847 75553847 C T NEK9 Silent p.V897V 0.29 TCGA-TQ-A7RW-01 17 35733066 35733066 T C C17orf78 Missense_Mutation p.I11T 0.25 deleterious(0.04) benign(0.027) TCGA-TQ-A7RW-01 17 53218683 53218683 G A STXBP4 Missense_Mutation p.G501E 0.05 deleterious(0) probably_damaging(0.98) TCGA-TQ-A7RW-01 17 57937725 57937725 G T TUBD1 Missense_Mutation p.F440L 0.08 deleterious(0) probably_damaging(0.947) TCGA-TQ-A7RW-01 17 67101613 67101613 G C ABCA6 Missense_Mutation p.I910M 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-TQ-A7RW-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.65 deleterious(0) probably_damaging(0.998) TCGA-TQ-A7RW-01 18 20516779 20516779 A G RBBP8 5'UTR 0.07 TCGA-TQ-A7RW-01 18 77464812 77464812 A G CTDP1 Missense_Mutation p.T223A 0.07 deleterious(0) probably_damaging(0.998) TCGA-TQ-A7RW-01 19 17424890 17424890 C T DDA1 Missense_Mutation p.A21V 0.03 tolerated(0.15) benign(0.238) TCGA-TQ-A7RW-01 19 22235409 22235409 C T ZNF257 5'UTR 0.05 TCGA-TQ-A7RW-01 19 35176239 35176239 G C ZNF302 3'UTR 0.05 TCGA-TQ-A7RW-01 19 9874046 9874046 G A ZNF846 Silent p.T18T 0.22 TCGA-TQ-A7RW-01 1 153954698 153954698 G C RAB13 Intron 0.08 TCGA-TQ-A7RW-01 1 158226059 158226059 T C CD1A Silent p.H197H 0.04 TCGA-TQ-A7RW-01 1 45486434 45486434 G C ZSWIM5 Missense_Mutation p.L826V 0.02 tolerated(0.09) unknown(0) TCGA-TQ-A7RW-01 20 29612032 29612032 G A FRG1B 5'UTR 0.14 TCGA-TQ-A7RW-01 20 50701717 50701717 C T ZFP64 Silent p.E439E 0.11 TCGA-TQ-A7RW-01 21 42064859 42064859 G A DSCAM Missense_Mutation p.R129C 0.09 deleterious(0) probably_damaging(1) TCGA-TQ-A7RW-01 22 29538177 29538177 C G KREMEN1 Intron 0.10 TCGA-TQ-A7RW-01 2 109368336 109368336 C T RANBP2 Silent p.N547N 0.34 TCGA-TQ-A7RW-01 2 180810352 180810352 T G CWC22 Missense_Mutation p.Q744P 0.06 tolerated_low_confidence(0.09) benign(0.037) TCGA-TQ-A7RW-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A7RW-01 2 233791769 233791769 G A NGEF Missense_Mutation p.L171F 0.37 tolerated(0.11) benign(0.015) TCGA-TQ-A7RW-01 2 60688207 60688207 A G BCL11A Missense_Mutation p.S614P 0.36 tolerated(0.4) benign(0.307) TCGA-TQ-A7RW-01 3 12475550 12475550 C T PPARG Missense_Mutation p.T475M 0.16 deleterious(0) probably_damaging(1) TCGA-TQ-A7RW-01 4 5798788 5798788 G A EVC Silent p.L642L 0.11 TCGA-TQ-A7RW-01 4 71200721 71200721 C A CABS1 5'UTR 0.24 TCGA-TQ-A7RW-01 5 126753365 126753365 C A MEGF10 Missense_Mutation p.P389Q 0.04 deleterious(0) probably_damaging(0.933) TCGA-TQ-A7RW-01 5 140230180 140230180 G C PCDHA9 Silent p.L700L 0.26 TCGA-TQ-A7RW-01 5 169533255 169533255 C T FOXI1 Silent p.S98S 0.40 TCGA-TQ-A7RW-01 5 32601155 32601155 A G SUB1 Missense_Mutation p.I117V 0.06 tolerated(0.11) benign(0.1) TCGA-TQ-A7RW-01 5 43659378 43659378 A T NNT Missense_Mutation p.N854Y 0.34 deleterious(0) probably_damaging(0.954) TCGA-TQ-A7RW-01 6 109854627 109854627 C T AK9 Missense_Mutation p.A1133T 0.04 tolerated(0.07) possibly_damaging(0.859) TCGA-TQ-A7RW-01 6 158870156 158870156 G T TULP4 Silent p.V224V 0.16 TCGA-TQ-A7RW-01 6 168311815 168311815 C T MLLT4 Missense_Mutation p.P602S 0.21 deleterious(0) probably_damaging(0.999) TCGA-TQ-A7RW-01 6 26273310 26273310 A C HIST1H2BI Missense_Mutation p.E36A 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.799) TCGA-TQ-A7RW-01 6 27419434 27419434 G C ZNF184 Missense_Mutation p.T635S 0.04 deleterious(0.04) possibly_damaging(0.884) TCGA-TQ-A7RW-01 6 348207 348207 C G DUSP22 Missense_Mutation p.S123C 0.04 deleterious(0.01) probably_damaging(0.938) TCGA-TQ-A7RW-01 6 84025055 84025055 G A ME1 Silent p.D226D 0.07 TCGA-TQ-A7RW-01 7 113517828 113517828 A G PPP1R3A Missense_Mutation p.W1107R 0.05 deleterious(0) probably_damaging(0.998) TCGA-TQ-A7RW-01 8 113241120 113241120 C G CSMD3 Missense_Mutation p.G3610A 0.13 tolerated(0.19) benign(0.313) TCGA-TQ-A7RW-01 8 72127635 72127635 A G EYA1 Silent p.S528S 0.05 TCGA-TQ-A7RW-01 8 94748551 94748551 C G RBM12B Missense_Mutation p.D30H 0.04 deleterious(0) probably_damaging(0.977) TCGA-TQ-A7RW-01 9 16437000 16437000 C T BNC2 Missense_Mutation p.E398K 0.39 tolerated(0.11) benign(0.357) TCGA-TQ-A7RW-01 X 148627360 148627360 G A CXorf40A Missense_Mutation p.G62R 0.72 tolerated(0.09) benign(0.055) TCGA-TQ-A8XE-01 10 26315440 26315440 T C MYO3A Missense_Mutation p.M311T 0.12 tolerated(0.41) benign(0.001) TCGA-TQ-A8XE-01 11 117335712 117335712 G A DSCAML1 Missense_Mutation p.R1131W 0.18 deleterious(0) probably_damaging(0.991) TCGA-TQ-A8XE-01 11 55433471 55433471 A G OR4C6 Missense_Mutation p.T277A 0.43 tolerated_low_confidence(0.13) benign(0.015) TCGA-TQ-A8XE-01 11 64597514 64597514 G A CDC42BPG Silent p.R1132R 0.38 TCGA-TQ-A8XE-01 11 7439282 7439282 C T SYT9 Silent p.N420N 0.20 TCGA-TQ-A8XE-01 12 120791134 120791134 C A MSI1 Missense_Mutation p.G234V 0.42 deleterious(0) benign(0.065) TCGA-TQ-A8XE-01 12 123424704 123424704 T C ABCB9 Missense_Mutation p.D566G 0.50 deleterious(0) probably_damaging(1) TCGA-TQ-A8XE-01 12 53005016 53005016 C T KRT73 Missense_Mutation p.R361H 0.22 tolerated(0.07) benign(0.146) TCGA-TQ-A8XE-01 12 88566414 88566414 A G TMTC3 Missense_Mutation p.N364S 0.36 deleterious(0) probably_damaging(0.999) TCGA-TQ-A8XE-01 13 28623582 28623582 G A FLT3 Silent p.T325T 0.46 TCGA-TQ-A8XE-01 14 60069953 60069957 GTAGA - RTN1 Frame_Shift_Del p.L735Cfs*5 0.28 TCGA-TQ-A8XE-01 16 57722359 57722359 G A GPR97 Missense_Mutation p.A546T 0.46 tolerated(0.34) benign(0.011) TCGA-TQ-A8XE-01 17 18872700 18872700 T C SLC5A10 Missense_Mutation p.I202T 0.43 deleterious(0) benign(0.025) TCGA-TQ-A8XE-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.71 TCGA-TQ-A8XE-01 18 67721477 67721477 A G RTTN Missense_Mutation p.L1692P 0.39 deleterious(0) possibly_damaging(0.829) TCGA-TQ-A8XE-01 19 41382446 41382446 A G CYP2A7 Missense_Mutation p.V430A 0.11 deleterious(0) possibly_damaging(0.87) TCGA-TQ-A8XE-01 19 52147181 52147181 C T SIGLEC14 Missense_Mutation p.R288Q 0.88 tolerated(0.38) benign(0.024) TCGA-TQ-A8XE-01 19 7809880 7809880 C T CD209 Missense_Mutation p.A283T 0.07 deleterious(0.02) probably_damaging(0.954) TCGA-TQ-A8XE-01 1 172579033 172579033 C T SUCO Silent p.G1133G 0.04 TCGA-TQ-A8XE-01 20 30371533 30371533 G A TPX2 Missense_Mutation p.D408N 0.08 tolerated(0.84) probably_damaging(0.996) TCGA-TQ-A8XE-01 20 30432396 30432396 G T FOXS1 Missense_Mutation p.T317N 0.29 deleterious(0.01) benign(0.446) TCGA-TQ-A8XE-01 22 37333970 37333970 T C CSF2RB Missense_Mutation p.V707A 0.20 tolerated(0.23) benign(0.049) TCGA-TQ-A8XE-01 2 136566894 136566894 A G LCT Missense_Mutation p.V1008A 0.37 tolerated(0.05) benign(0.057) TCGA-TQ-A8XE-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-TQ-A8XE-01 2 233898830 233898830 A G NEU2 Missense_Mutation p.Q69R 0.41 tolerated(0.22) benign(0.295) TCGA-TQ-A8XE-01 2 88874643 88874643 T C EIF2AK3 Silent p.E786E 0.46 TCGA-TQ-A8XE-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.44 tolerated(0.11) possibly_damaging(0.529) TCGA-TQ-A8XE-01 3 45160021 45160021 C G CDCP1 Missense_Mutation p.V59L 0.37 tolerated(0.7) benign(0.001) TCGA-TQ-A8XE-01 4 110932374 110932374 T C EGF Silent p.T1129T 0.55 TCGA-TQ-A8XE-01 4 66197690 66197690 C T EPHA5 Splice_Site p.X1003_splice 0.30 TCGA-TQ-A8XE-01 4 83557824 83557824 G A SCD5 Missense_Mutation p.A241V 0.42 deleterious(0.04) benign(0.032) TCGA-TQ-A8XE-01 5 140515080 140515080 C T PCDHB5 Missense_Mutation p.L22F 0.37 tolerated_low_confidence(0.73) benign(0.007) TCGA-TQ-A8XE-01 5 15500617 15500617 C T FBXL7 5'UTR 0.43 TCGA-TQ-A8XE-01 6 24596226 24596226 C T KIAA0319 Missense_Mutation p.A226T 0.83 tolerated(0.5) benign(0.008) TCGA-TQ-A8XE-01 6 25769311 25769311 A G SLC17A4 Missense_Mutation p.M64V 0.33 deleterious(0) possibly_damaging(0.669) TCGA-TQ-A8XE-01 6 55223800 55223800 T A GFRAL Missense_Mutation p.S272R 0.08 deleterious(0.01) possibly_damaging(0.649) TCGA-TQ-A8XE-01 7 100403136 100403136 G C EPHB4 Missense_Mutation p.R889G 0.29 tolerated(0.47) benign(0.087) TCGA-TQ-A8XE-01 7 98507916 98507916 C G TRRAP Missense_Mutation p.Q530E 0.43 benign(0) TCGA-TQ-A8XE-01 9 131012537 131012537 C T DNM1 Silent p.S740S 0.58 TCGA-TQ-A8XE-01 X 100275475 100275475 C A TRMT2B Splice_Site p.X390_splice 0.38 TCGA-TQ-A8XE-01 X 131207081 131207109 ACAGATAAAATGGTGAAGAAACTAATTGA - MST4 Frame_Shift_Del p.T396Kfs*38 0.12 TCGA-TQ-A8XE-01 X 153285163 153285163 A G IRAK1 Missense_Mutation p.M34T 0.22 deleterious(0) probably_damaging(0.993) TCGA-TQ-A8XE-01 X 153496073 153496073 G A OPN1MW2 Silent p.T267T 0.02 TCGA-TQ-A8XE-01 X 154736769 154736769 T C TMLHE Missense_Mutation p.H262R 0.28 deleterious(0) probably_damaging(0.995) TCGA-TQ-A8XE-01 X 3241758 3241758 C T MXRA5 Silent p.Q656Q 0.23 TCGA-TQ-A8XE-01 X 47442890 47442890 T A TIMP1 Missense_Mutation p.C26S 0.47 deleterious(0) probably_damaging(1) TCGA-VM-A8C8-01 10 50952127 50952127 G A OGDHL Missense_Mutation p.P592S 0.11 tolerated(0.06) benign(0.009) TCGA-VM-A8C8-01 11 11959846 11959846 C T USP47 Missense_Mutation p.S639F 0.34 tolerated(0.05) benign(0.221) TCGA-VM-A8C8-01 11 34680178 34680178 G A EHF Missense_Mutation p.V258I 0.17 tolerated(0.26) benign(0.009) TCGA-VM-A8C8-01 11 61110297 61110297 C T DAK Silent p.D282D 0.25 TCGA-VM-A8C8-01 11 62601766 62601766 C T WDR74 Missense_Mutation p.E253K 0.15 tolerated(0.31) benign(0.067) TCGA-VM-A8C8-01 12 112924324 112924324 C T PTPN11 Missense_Mutation p.P424S 0.07 deleterious(0) probably_damaging(0.963) TCGA-VM-A8C8-01 13 77844139 77844139 T G MYCBP2 Missense_Mutation p.L378F 0.11 probably_damaging(0.935) TCGA-VM-A8C8-01 15 41308307 41308307 G A INO80 Silent p.T1127T 0.36 TCGA-VM-A8C8-01 15 50557873 50557873 C T HDC 5'UTR 0.21 TCGA-VM-A8C8-01 15 51028304 51028304 T A SPPL2A Missense_Mutation p.E309V 0.19 deleterious(0.03) possibly_damaging(0.906) TCGA-VM-A8C8-01 16 4945354 4945354 G A PPL Nonsense_Mutation p.R384* 0.17 TCGA-VM-A8C8-01 16 53190447 53190447 C G CHD9 Missense_Mutation p.S149C 0.20 possibly_damaging(0.904) TCGA-VM-A8C8-01 17 13980254 13980254 T C COX10 Missense_Mutation p.I127T 0.18 tolerated(0.8) benign(0.002) TCGA-VM-A8C8-01 17 34195846 34195846 G A C17orf66 5'UTR 0.31 TCGA-VM-A8C8-01 17 47000214 47000214 T C UBE2Z Missense_Mutation p.V270A 0.22 deleterious(0.04) benign(0.346) TCGA-VM-A8C8-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.74 deleterious(0) probably_damaging(1) TCGA-VM-A8C8-01 19 14492346 14492346 G A CD97 Missense_Mutation p.R4H 0.08 tolerated(0.17) benign(0.132) TCGA-VM-A8C8-01 19 16905360 16905360 C T NWD1 Silent p.A1100A 0.21 TCGA-VM-A8C8-01 19 7794297 7794297 G A CLEC4G Silent p.D279D 0.15 TCGA-VM-A8C8-01 1 153924030 153924030 G C CRTC2 Silent p.P370P 0.19 TCGA-VM-A8C8-01 1 28599885 28599885 G A SESN2 Missense_Mutation p.R256H 0.22 tolerated(0.14) benign(0.358) TCGA-VM-A8C8-01 1 35227307 35227307 G A GJB4 Missense_Mutation p.R151H 0.41 tolerated(0.55) benign(0.005) TCGA-VM-A8C8-01 1 47279935 47279935 A C CYP4B1 Missense_Mutation p.K277T 0.09 tolerated(0.06) possibly_damaging(0.53) TCGA-VM-A8C8-01 1 87031502 87031502 C T CLCA4 Silent p.N251N 0.14 TCGA-VM-A8C8-01 20 23667836 23667836 G A CST4 Silent p.T77T 0.22 TCGA-VM-A8C8-01 20 31387129 31387129 C T DNMT3B Missense_Mutation p.A585V 0.50 deleterious(0) probably_damaging(0.996) TCGA-VM-A8C8-01 20 6021605 6021605 G A LRRN4 3'UTR 0.21 TCGA-VM-A8C8-01 21 19666729 19666729 T C TMPRSS15 Missense_Mutation p.T782A 0.20 tolerated(0.32) benign(0.001) TCGA-VM-A8C8-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-VM-A8C8-01 2 238280790 238280790 G A COL6A3 Silent p.S1290S 0.27 TCGA-VM-A8C8-01 2 31754484 31754484 C G AL133247.2 Intron 0.14 TCGA-VM-A8C8-01 3 11068038 11068038 G A SLC6A1 Silent p.A357A 0.50 TCGA-VM-A8C8-01 3 175042013 175042013 A G NAALADL2 Missense_Mutation p.D330G 0.52 deleterious(0) possibly_damaging(0.867) TCGA-VM-A8C8-01 3 51978147 51978147 G A PARP3 Missense_Mutation p.E83K 0.23 tolerated(0.22) benign(0.001) TCGA-VM-A8C8-01 4 110895896 110895896 C T EGF Missense_Mutation p.R588C 0.07 deleterious(0.01) possibly_damaging(0.601) TCGA-VM-A8C8-01 4 184930889 184930889 G A STOX2 Missense_Mutation p.E300K 0.13 deleterious(0) probably_damaging(0.998) TCGA-VM-A8C8-01 4 68919541 68919541 A G TMPRSS11F 3'UTR 0.23 TCGA-VM-A8C8-01 5 118503398 118503398 G T DMXL1 Missense_Mutation p.R1746L 0.39 tolerated(0.38) benign(0.175) TCGA-VM-A8C8-01 5 176824066 176824066 C T SLC34A1 Silent p.S469S 0.18 TCGA-VM-A8C8-01 6 109867299 109867299 G A AK9 Missense_Mutation p.P999L 0.33 deleterious(0.04) probably_damaging(0.94) TCGA-VM-A8C8-01 7 100816720 100816720 C T NAT16 Missense_Mutation p.G132R 0.34 deleterious(0.03) probably_damaging(0.977) TCGA-VM-A8C8-01 7 141635639 141635639 G A CLEC5A Missense_Mutation p.A107V 0.15 tolerated(0.21) possibly_damaging(0.795) TCGA-VM-A8C8-01 8 144462859 144462859 G C RHPN1 Silent p.V439V 0.30 TCGA-VM-A8C8-01 8 68956773 68956773 T C PREX2 Silent p.R297R 0.12 TCGA-VM-A8C8-01 9 134404363 134404363 C - UCK1 Frame_Shift_Del p.V196* 0.22 TCGA-VM-A8C8-01 9 35706484 35706484 T C TLN1 Missense_Mutation p.N1718S 0.20 tolerated(0.82) benign(0) TCGA-VM-A8C8-01 9 96859724 96859724 G A PTPDC1 Silent p.R290R 0.21 TCGA-VM-A8C8-01 X 144904070 144904070 A G SLITRK2 Missense_Mutation p.N43D 0.56 tolerated(0.15) benign(0.248) TCGA-VM-A8C8-01 X 152034434 152034434 C T NSDHL Silent p.G205G 0.33 TCGA-VM-A8C8-01 X 48369767 48369767 G T PORCN Missense_Mutation p.W74L 0.19 deleterious(0.01) probably_damaging(0.934) TCGA-VM-A8C8-01 X 49961552 49961552 T C AKAP4 Missense_Mutation p.D89G 0.16 deleterious(0) benign(0.437) TCGA-VM-A8C8-01 X 76938788 76938788 G A ATRX Nonsense_Mutation p.R654* 0.35 TCGA-VM-A8C9-01 1 109878960 109878960 T C SORT1 Missense_Mutation p.I425V 0.14 tolerated(0.65) benign(0.003) TCGA-VM-A8C9-01 1 160648835 160648835 G A CD48 3'UTR 0.24 TCGA-VM-A8C9-01 20 44517457 44517457 C T NEURL2 Silent p.R266R 0.07 TCGA-VM-A8C9-01 3 122274172 122274172 C T PARP9 Silent p.L317L 0.09 TCGA-VM-A8C9-01 3 178938891 178938891 G T PIK3CA Missense_Mutation p.K711N 0.18 deleterious(0) probably_damaging(0.995) TCGA-VM-A8C9-01 4 134072440 134072440 T C PCDH10 Missense_Mutation p.V382A 0.05 tolerated(0.22) probably_damaging(0.997) TCGA-VM-A8C9-01 6 25776865 25776865 T A SLC17A4 Missense_Mutation p.C344S 0.05 tolerated(0.44) benign(0.008) TCGA-VM-A8CA-01 10 32150341 32150341 T C ARHGAP12 Silent p.Q310Q 0.19 TCGA-VM-A8CA-01 11 5153260 5153260 C T OR52A5 Missense_Mutation p.V205I 0.36 tolerated(0.07) probably_damaging(0.967) TCGA-VM-A8CA-01 11 67372458 67372458 G A C11orf72 Missense_Mutation p.A28V 0.36 possibly_damaging(0.682) TCGA-VM-A8CA-01 11 68204389 68204389 A G LRP5 Missense_Mutation p.S1345G 0.35 deleterious(0.03) benign(0.411) TCGA-VM-A8CA-01 12 45567348 45567348 C A PLEKHA8P1 RNA 0.10 TCGA-VM-A8CA-01 12 49227280 49227280 C T DDX23 Missense_Mutation p.R528H 0.05 deleterious(0.03) possibly_damaging(0.751) TCGA-VM-A8CA-01 12 52777396 52777396 C T KRT84 Missense_Mutation p.V245I 0.40 tolerated(0.11) benign(0.019) TCGA-VM-A8CA-01 12 7077605 7077605 T C PHB2 Missense_Mutation p.N149S 0.22 deleterious(0) probably_damaging(1) TCGA-VM-A8CA-01 15 43817305 43817305 G A MAP1A Missense_Mutation p.V1212I 0.22 benign(0.002) TCGA-VM-A8CA-01 15 81627158 81627158 C T TMC3 Missense_Mutation p.A788T 0.19 tolerated(1) benign(0.001) TCGA-VM-A8CA-01 16 29999002 29999002 C T TAOK2 Missense_Mutation p.P1137S 0.14 deleterious_low_confidence(0.05) benign(0.022) TCGA-VM-A8CA-01 16 74487225 74487225 G - GLG1 Frame_Shift_Del p.P1127Qfs*12 0.30 TCGA-VM-A8CA-01 16 74709277 74709277 C T MLKL Missense_Mutation p.A406T 0.06 tolerated(0.08) benign(0.265) TCGA-VM-A8CA-01 19 52519679 52519679 C T ZNF614 Missense_Mutation p.R391H 0.29 deleterious(0) benign(0.189) TCGA-VM-A8CA-01 19 7809881 7809881 G A CD209 Silent p.T282T 0.06 TCGA-VM-A8CA-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.60 tolerated(0.06) benign(0.006) TCGA-VM-A8CA-01 1 117699297 117699297 A G VTCN1 Missense_Mutation p.L115S 0.60 deleterious(0) probably_damaging(1) TCGA-VM-A8CA-01 1 179526176 179526176 C T NPHS2 Missense_Mutation p.A242T 0.06 deleterious(0) possibly_damaging(0.889) TCGA-VM-A8CA-01 20 60987732 60987732 G A RBBP8NL Silent p.H608H 0.41 TCGA-VM-A8CA-01 21 30318165 30318165 C T LTN1 Nonsense_Mutation p.W1290* 0.31 TCGA-VM-A8CA-01 21 37412909 37412909 G T SETD4 Missense_Mutation p.T343K 0.06 deleterious(0) probably_damaging(0.996) TCGA-VM-A8CA-01 22 39445579 39445579 G A APOBEC3F Missense_Mutation p.R239Q 0.17 tolerated(0.53) possibly_damaging(0.67) TCGA-VM-A8CA-01 2 102851427 102851427 G A IL1RL2 Silent p.S456S 0.06 TCGA-VM-A8CA-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-VM-A8CA-01 2 236659029 236659029 C T AGAP1 Silent p.I190I 0.14 TCGA-VM-A8CA-01 4 134072866 134072866 A G PCDH10 Missense_Mutation p.Y524C 0.07 tolerated(0.16) probably_damaging(0.969) TCGA-VM-A8CA-01 5 178581831 178581831 G T ADAMTS2 Missense_Mutation p.H408N 0.19 deleterious(0.01) probably_damaging(1) TCGA-VM-A8CA-01 6 13612077 13612077 G T SIRT5 Nonsense_Mutation p.E305* 0.08 TCGA-VM-A8CA-01 6 75898204 75898204 G T COL12A1 Missense_Mutation p.P291T 0.18 probably_damaging(1) TCGA-VM-A8CA-01 9 77280504 77280504 A G RORB Silent p.K331K 0.08 TCGA-VM-A8CA-01 9 90535974 90535974 T C SPATA31C1 RNA 0.20 TCGA-VM-A8CA-01 X 34149054 34149054 G A FAM47A Missense_Mutation p.R448W 0.38 tolerated(0.12) probably_damaging(0.988) TCGA-VM-A8CB-01 10 112364087 112364087 G A SMC3 3'UTR 0.08 TCGA-VM-A8CB-01 12 111895132 111895132 C T ATXN2 Silent p.A1134A 0.16 TCGA-VM-A8CB-01 13 52991270 52991270 A T VPS36 Silent p.R304R 0.42 TCGA-VM-A8CB-01 13 97485206 97485206 C T HS6ST3 Silent p.N390N 0.06 TCGA-VM-A8CB-01 14 100166434 100166434 C T CYP46A1 Missense_Mutation p.R147W 0.26 deleterious(0) probably_damaging(0.996) TCGA-VM-A8CB-01 15 74328199 74328199 T C PML Intron 0.03 TCGA-VM-A8CB-01 15 90784550 90784550 G A GDPGP1 Missense_Mutation p.R137H 0.06 tolerated(0.18) benign(0.02) TCGA-VM-A8CB-01 17 10546191 10546191 G T MYH3 Missense_Mutation p.F511L 0.40 deleterious(0.01) benign(0.334) TCGA-VM-A8CB-01 17 32614693 32614693 C T CCL11 Missense_Mutation p.P93L 0.30 deleterious(0.05) benign(0.002) TCGA-VM-A8CB-01 17 67501928 67501928 G A MAP2K6 Silent p.K8K 0.06 TCGA-VM-A8CB-01 17 74003439 74003439 C A EVPL Missense_Mutation p.R1949S 0.42 deleterious(0.03) possibly_damaging(0.886) TCGA-VM-A8CB-01 18 43565333 43565333 G A PSTPIP2 3'UTR 0.60 TCGA-VM-A8CB-01 19 42507582 42507582 C T GRIK5 Missense_Mutation p.G806S 0.88 deleterious(0.01) probably_damaging(0.921) TCGA-VM-A8CB-01 19 42791808 42791808 A G CIC Missense_Mutation p.K232E 0.80 probably_damaging(0.997) TCGA-VM-A8CB-01 1 78425906 78425907 TG - FUBP1 Frame_Shift_Del p.A513Vfs*11 0.40 TCGA-VM-A8CB-01 20 16387071 16387071 A T KIF16B Missense_Mutation p.M548K 0.41 tolerated(0.19) probably_damaging(0.998) TCGA-VM-A8CB-01 22 32487699 32487699 C T SLC5A1 Silent p.Y410Y 0.04 TCGA-VM-A8CB-01 2 136873410 136873410 G A CXCR4 Missense_Mutation p.R34C 0.56 tolerated(0.05) possibly_damaging(0.65) TCGA-VM-A8CB-01 2 182347308 182347308 T C ITGA4 Missense_Mutation p.L324P 0.05 deleterious(0) probably_damaging(0.999) TCGA-VM-A8CB-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-VM-A8CB-01 2 238419718 238419718 C T MLPH Missense_Mutation p.S140F 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-VM-A8CB-01 3 119133649 119133649 A G ARHGAP31 Missense_Mutation p.K958R 0.43 deleterious(0.01) benign(0.009) TCGA-VM-A8CB-01 3 157920909 157920909 G C RSRC1 Missense_Mutation p.R123S 0.24 tolerated_low_confidence(0.16) unknown(0) TCGA-VM-A8CB-01 4 22390464 22390464 T C GPR125 Missense_Mutation p.R944G 0.44 tolerated(0.09) probably_damaging(0.999) TCGA-VM-A8CB-01 6 39507890 39507890 G A KIF6 Missense_Mutation p.R512C 0.41 tolerated(0.09) benign(0.005) TCGA-VM-A8CB-01 6 46555791 46555791 C T CYP39A1 Missense_Mutation p.E381K 0.40 deleterious(0.01) possibly_damaging(0.843) TCGA-VM-A8CB-01 6 46766355 46766355 A T MEP1A Missense_Mutation p.D53V 0.39 deleterious(0) benign(0.052) TCGA-VM-A8CB-01 7 128493774 128493774 C T FLNC Missense_Mutation p.P2123S 0.51 deleterious(0.02) possibly_damaging(0.819) TCGA-VM-A8CB-01 7 2403386 2403386 A G EIF3B Silent p.E330E 0.56 TCGA-VM-A8CB-01 8 24774809 24774809 G A NEFM Missense_Mutation p.A481T 0.54 tolerated(0.23) unknown(0) TCGA-VM-A8CB-01 9 114337092 114337092 C T PTGR1 Missense_Mutation p.G228S 0.10 tolerated(0.86) benign(0.001) TCGA-VM-A8CB-01 X 132160495 132160495 C G USP26 Missense_Mutation p.S585T 0.90 tolerated(0.18) possibly_damaging(0.725) TCGA-VM-A8CB-01 X 69370131 69370131 A G IGBP1 Missense_Mutation p.Y277C 0.27 tolerated(0.19) benign(0.003) TCGA-VM-A8CD-01 10 89692911 89692911 G A PTEN Missense_Mutation p.G132D 0.43 deleterious(0.03) probably_damaging(0.96) TCGA-VM-A8CD-01 11 618738 618738 T C CDHR5 Silent p.A607A 0.34 TCGA-VM-A8CD-01 11 65268060 65268060 A G MALAT1 RNA 0.53 TCGA-VM-A8CD-01 11 66455772 66455772 C T SPTBN2 Missense_Mutation p.R2081Q 0.38 tolerated(0.37) benign(0.001) TCGA-VM-A8CD-01 12 25357118 25357118 C A LYRM5 Missense_Mutation p.P49T 0.37 deleterious(0.01) probably_damaging(0.929) TCGA-VM-A8CD-01 12 48063934 48063934 T C RPAP3 Silent p.A494A 0.31 TCGA-VM-A8CD-01 14 106320841 106320841 C A IGHM Silent p.G323G 0.36 TCGA-VM-A8CD-01 14 34243682 34243682 A C NPAS3 Missense_Mutation p.H331P 0.37 deleterious(0.05) benign(0.212) TCGA-VM-A8CD-01 15 29561310 29561310 G C NDNL2 Missense_Mutation p.D200E 0.37 tolerated(0.78) benign(0.145) TCGA-VM-A8CD-01 15 86287023 86287025 AAG - AKAP13 In_Frame_Del p.K2792del 0.24 TCGA-VM-A8CD-01 16 24373179 24373179 G A CACNG3 Missense_Mutation p.V315I 0.28 deleterious(0) probably_damaging(0.996) TCGA-VM-A8CD-01 17 10419305 10419305 C T MYH1 Missense_Mutation p.R148H 0.27 deleterious(0.01) probably_damaging(1) TCGA-VM-A8CD-01 17 21825473 21825473 C A FAM27L RNA 0.42 TCGA-VM-A8CD-01 17 29486037 29486037 G - NF1 Frame_Shift_Del p.G72Efs*13 0.28 TCGA-VM-A8CD-01 17 73566103 73566103 C T LLGL2 Silent p.A547A 0.21 TCGA-VM-A8CD-01 18 8394606 8394606 C G PTPRM Silent p.L1447L 0.27 TCGA-VM-A8CD-01 19 46093952 46093952 C T GPR4 3'UTR 0.24 TCGA-VM-A8CD-01 1 196654268 196654268 G A CFH Missense_Mutation p.E289K 0.36 tolerated(0.39) benign(0.21) TCGA-VM-A8CD-01 20 47870232 47870232 G A ZNFX1 Missense_Mutation p.H1026Y 0.32 deleterious(0) benign(0.132) TCGA-VM-A8CD-01 21 34923110 34923110 C T SON Missense_Mutation p.P525S 0.33 possibly_damaging(0.641) TCGA-VM-A8CD-01 2 177017669 177017669 A G HOXD4 Nonstop_Mutation p.*256Wext*81 0.31 TCGA-VM-A8CD-01 2 85622055 85622055 C G CAPG Missense_Mutation p.E336D 0.28 deleterious(0) probably_damaging(0.998) TCGA-VM-A8CD-01 3 121154999 121154999 G T POLQ Silent p.R2505R 0.24 TCGA-VM-A8CD-01 3 48454246 48454246 G A PLXNB1 Missense_Mutation p.R1587W 0.37 deleterious(0) probably_damaging(0.999) TCGA-VM-A8CD-01 4 114274342 114274342 C T ANK2 Missense_Mutation p.T1523I 0.37 benign(0.316) TCGA-VM-A8CD-01 5 94044279 94044279 A G MCTP1 Missense_Mutation p.Y956H 0.28 deleterious(0.03) probably_damaging(1) TCGA-VM-A8CD-01 6 31556919 31556919 C T NCR3 Silent p.P177P 0.33 TCGA-VM-A8CD-01 7 101671400 101671400 C T CUX1 Missense_Mutation p.P66L 0.25 deleterious(0) unknown(0) TCGA-VM-A8CD-01 7 55232997 55232997 G T EGFR Missense_Mutation p.A583S 0.16 tolerated(0.18) benign(0.055) TCGA-VM-A8CD-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.22 deleterious(0) possibly_damaging(0.75) TCGA-VM-A8CD-01 8 38006211 38006211 G A STAR Silent p.G42G 0.28 TCGA-VM-A8CD-01 9 94486078 94486078 C T ROR2 Missense_Mutation p.A900T 0.32 tolerated_low_confidence(0.61) benign(0) TCGA-VM-A8CE-01 11 107463175 107463175 C A AP000889.3 Missense_Mutation p.P125T 0.05 tolerated_low_confidence(0.42) benign(0.023) TCGA-VM-A8CE-01 11 125453434 125453434 C G EI24 Silent p.L292L 0.30 TCGA-VM-A8CE-01 11 56380102 56380102 G A OR5M1 Missense_Mutation p.R293W 0.05 deleterious(0.02) probably_damaging(0.983) TCGA-VM-A8CE-01 13 35738505 35738505 G T NBEA Missense_Mutation p.K1364N 0.21 tolerated(0.09) benign(0.109) TCGA-VM-A8CE-01 16 31098181 31098181 A G RP11-196G11.1 3'Flank 0.06 TCGA-VM-A8CE-01 16 66842495 66842495 T A NAE1 Missense_Mutation p.D420V 0.13 deleterious(0) possibly_damaging(0.476) TCGA-VM-A8CE-01 19 14066828 14066828 C G DCAF15 Missense_Mutation p.F157L 0.05 tolerated(0.09) benign(0.364) TCGA-VM-A8CE-01 19 2834829 2834829 C G ZNF554 Missense_Mutation p.N532K 0.30 tolerated(0.06) benign(0.038) TCGA-VM-A8CE-01 19 42791718 42791718 C T CIC Missense_Mutation p.R202W 0.17 probably_damaging(1) TCGA-VM-A8CE-01 19 42791752 42791752 G C CIC Missense_Mutation p.R213P 0.15 probably_damaging(0.997) TCGA-VM-A8CE-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.12 probably_damaging(1) TCGA-VM-A8CE-01 19 9064360 9064360 C T MUC16 Missense_Mutation p.V7696M 0.06 unknown(0) TCGA-VM-A8CE-01 2 128744415 128744415 G C SAP130 Silent p.P660P 0.29 TCGA-VM-A8CE-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-VM-A8CE-01 2 234652248 234652248 G A UGT1A10 Intron 0.24 TCGA-VM-A8CE-01 2 26417473 26417473 G A HADHA Missense_Mutation p.A552V 0.08 deleterious(0.03) possibly_damaging(0.624) TCGA-VM-A8CE-01 5 140615655 140615655 A G PCDHB18 RNA 0.21 TCGA-VM-A8CE-01 6 161530825 161530825 G A MAP3K4 Silent p.G1425G 0.31 TCGA-VM-A8CE-01 9 113170819 113170819 A G SVEP1 Missense_Mutation p.V2354A 0.28 benign(0.026) TCGA-VM-A8CE-01 9 77442828 77442828 C T TRPM6 Missense_Mutation p.S236N 0.31 deleterious(0) probably_damaging(0.999) TCGA-VM-A8CE-01 X 73065175 73065175 G A XIST RNA 0.07 TCGA-VM-A8CF-01 10 135370647 135370647 A T SYCE1 Missense_Mutation p.L130M 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-VM-A8CF-01 10 29839796 29839796 G A SVIL Missense_Mutation p.A186V 0.04 deleterious(0.05) benign(0.008) TCGA-VM-A8CF-01 11 102711301 102711301 C A MMP3 Missense_Mutation p.A217S 0.06 deleterious(0) probably_damaging(0.962) TCGA-VM-A8CF-01 11 106647281 106647281 C A GUCY1A2 Missense_Mutation p.V574F 0.11 deleterious(0) probably_damaging(0.988) TCGA-VM-A8CF-01 11 111779528 111779528 C T CRYAB Missense_Mutation p.R163H 0.21 deleterious(0.04) probably_damaging(0.97) TCGA-VM-A8CF-01 11 46701805 46701805 C G ARHGAP1 Missense_Mutation p.R283T 0.18 deleterious(0) probably_damaging(0.996) TCGA-VM-A8CF-01 11 56230095 56230095 G C OR5M9 Silent p.P261P 0.17 TCGA-VM-A8CF-01 11 56230096 56230096 G A OR5M9 Missense_Mutation p.P261L 0.17 deleterious(0.01) possibly_damaging(0.747) TCGA-VM-A8CF-01 11 59210797 59210797 C T OR5A1 Silent p.I52I 0.13 TCGA-VM-A8CF-01 15 100695507 100695507 G A ADAMTS17 Silent p.D400D 0.24 TCGA-VM-A8CF-01 17 10348674 10348674 G C MYH4 Silent p.T1725T 0.21 TCGA-VM-A8CF-01 17 39535345 39535345 G A KRT34 Silent p.N362N 0.37 TCGA-VM-A8CF-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.89 deleterious(0) probably_damaging(0.998) TCGA-VM-A8CF-01 17 77082120 77082120 G T ENGASE Missense_Mutation p.A641S 0.22 tolerated(0.36) benign(0.011) TCGA-VM-A8CF-01 18 13825781 13825781 A G MC5R Missense_Mutation p.H6R 0.16 tolerated(0.42) benign(0.024) TCGA-VM-A8CF-01 18 7888149 7888149 G C PTPRM Missense_Mutation p.R81T 0.19 deleterious(0) benign(0.15) TCGA-VM-A8CF-01 19 11143976 11143976 C T SMARCA4 Missense_Mutation p.A1186V 0.36 possibly_damaging(0.742) TCGA-VM-A8CF-01 19 54974125 54974125 C T LENG9 Silent p.P217P 0.13 TCGA-VM-A8CF-01 19 55420628 55420628 C T NCR1 Missense_Mutation p.S127L 0.23 deleterious(0.05) benign(0.028) TCGA-VM-A8CF-01 1 152276230 152276230 A G FLG Missense_Mutation p.L3711P 0.33 unknown(0) TCGA-VM-A8CF-01 1 158325645 158325645 C T CD1E Silent p.G218G 0.20 TCGA-VM-A8CF-01 1 192628531 192628531 T A RGS13 Missense_Mutation p.C120S 0.18 tolerated(0.16) probably_damaging(1) TCGA-VM-A8CF-01 1 207930905 207930905 C T CD46 Missense_Mutation p.R103W 0.17 deleterious(0.02) benign(0.199) TCGA-VM-A8CF-01 1 230845898 230845898 C A AGT Silent p.V233V 0.12 TCGA-VM-A8CF-01 2 175619022 175619022 A G CHRNA1 Silent p.F180F 0.43 TCGA-VM-A8CF-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-VM-A8CF-01 2 27722069 27722071 GAA - GCKR In_Frame_Del p.K165del 0.18 TCGA-VM-A8CF-01 2 89265927 89265927 G A IGKV1-6 Silent p.L69L 0.04 TCGA-VM-A8CF-01 3 68788283 68788283 C G FAM19A4 Silent p.V118V 0.42 TCGA-VM-A8CF-01 3 89390920 89390920 C A EPHA3 Missense_Mutation p.P329Q 0.21 deleterious(0.01) probably_damaging(1) TCGA-VM-A8CF-01 4 158059959 158059959 A G GLRB Splice_Site p.X204_splice 0.47 TCGA-VM-A8CF-01 4 46388112 46388112 G C GABRA2 Missense_Mutation p.R56G 0.21 deleterious(0) probably_damaging(0.995) TCGA-VM-A8CF-01 4 57796251 57796251 A G REST Silent p.K409K 0.17 TCGA-VM-A8CF-01 4 6862653 6862653 T C KIAA0232 Missense_Mutation p.S182P 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-VM-A8CF-01 4 71889297 71889297 G T DCK Missense_Mutation p.L141F 0.38 deleterious(0.01) possibly_damaging(0.689) TCGA-VM-A8CF-01 5 140590836 140590836 A G PCDHB12 Missense_Mutation p.N786S 0.35 tolerated_low_confidence(0.26) benign(0.003) TCGA-VM-A8CF-01 6 3106127 3106127 G A RIPK1 Missense_Mutation p.G473D 0.11 tolerated(0.1) benign(0.008) TCGA-VM-A8CF-01 6 41654880 41654880 T C TFEB Missense_Mutation p.N252S 0.20 deleterious(0) probably_damaging(0.999) TCGA-VM-A8CF-01 6 55924013 55924013 C T COL21A1 Missense_Mutation p.G879E 0.28 deleterious(0) benign(0.006) TCGA-VM-A8CF-01 7 107215662 107215662 G C DUS4L Missense_Mutation p.C129S 0.12 tolerated(0.42) benign(0.159) TCGA-VM-A8CF-01 7 33134858 33134858 A G RP9 Silent p.S218S 0.22 TCGA-VM-A8CF-01 8 108334251 108334251 T G ANGPT1 Silent p.T227T 0.08 TCGA-VM-A8CF-01 9 14746437 14746437 C T FREM1 Silent p.G2056G 0.25 TCGA-VM-A8CF-01 9 15459757 15459757 T C SNAPC3 Missense_Mutation p.C377R 0.26 deleterious(0) probably_damaging(0.988) TCGA-VM-A8CF-01 9 85862745 85862745 G T FRMD3 3'UTR 0.22 TCGA-VM-A8CF-01 X 153586584 153586584 G A FLNA Silent p.L1580L 0.25 TCGA-VM-A8CF-01 X 41057976 41057976 A G USP9X Missense_Mutation p.M1526V 0.36 deleterious(0.01) benign(0.011) TCGA-VM-A8CF-01 X 54570718 54570718 G A GNL3L Missense_Mutation p.V197M 0.54 deleterious(0.02) probably_damaging(0.997) TCGA-VM-A8CF-01 X 76939666 76939669 TCAA - ATRX Frame_Shift_Del p.I360Rfs*6 0.36 TCGA-VM-A8CH-01 11 128848708 128848708 C G ARHGAP32 Silent p.R679R 0.28 TCGA-VM-A8CH-01 15 56208601 56208601 A C NEDD4 Missense_Mutation p.S143R 0.46 deleterious_low_confidence(0) possibly_damaging(0.477) TCGA-VM-A8CH-01 15 66210374 66210374 G A MEGF11 Silent p.N672N 0.34 TCGA-VM-A8CH-01 16 20410472 20410472 C T PDILT Missense_Mutation p.A51T 0.44 tolerated(0.14) benign(0.269) TCGA-VM-A8CH-01 17 1633762 1633762 G A WDR81 Silent p.L1252L 0.43 TCGA-VM-A8CH-01 17 30190361 30190361 G A UTP6 3'UTR 0.39 TCGA-VM-A8CH-01 17 80040931 80040931 T C FASN Missense_Mutation p.I1876V 0.55 tolerated(0.32) benign(0.011) TCGA-VM-A8CH-01 1 204006301 204006301 G T LINC00303 Intron 0.31 TCGA-VM-A8CH-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-VM-A8CH-01 2 79349251 79349251 G A REG1A Silent p.K107K 0.38 TCGA-VM-A8CH-01 3 134323111 134323111 C T KY Silent p.T432T 0.29 TCGA-VM-A8CH-01 5 169015540 169015540 A G SPDL1 Silent p.Q40Q 0.15 TCGA-VM-A8CH-01 6 25726459 25726459 G A HIST1H2AA Silent p.G99G 0.44 TCGA-VM-A8CH-01 7 141418984 141418984 T C WEE2 Missense_Mutation p.L233P 0.43 deleterious(0) probably_damaging(1) TCGA-VM-A8CH-01 9 34306264 34306264 G T KIF24 Missense_Mutation p.Q267K 0.41 deleterious(0.05) benign(0.19) TCGA-VM-A8CH-01 X 76938201 76938202 AG - ATRX Frame_Shift_Del p.S849Ffs*2 0.41 TCGA-VV-A829-01 10 103900609 103900609 C T PPRC1 Missense_Mutation p.L782F 0.48 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VV-A829-01 10 44139389 44139389 G C ZNF32 3'UTR 0.33 TCGA-VV-A829-01 11 116692097 116692097 T C APOA4 Missense_Mutation p.Y226C 0.04 deleterious(0) probably_damaging(0.986) TCGA-VV-A829-01 11 55797924 55797924 T C OR5AS1 Silent p.T10T 0.26 TCGA-VV-A829-01 12 10954500 10954500 C T TAS2R7 Missense_Mutation p.D224N 0.52 deleterious(0) probably_damaging(1) TCGA-VV-A829-01 12 98927458 98927458 G A TMPO Missense_Mutation p.E475K 0.39 deleterious_low_confidence(0) benign(0.26) TCGA-VV-A829-01 14 20925577 20925577 C G APEX1 Missense_Mutation p.H289Q 0.72 tolerated(0.35) benign(0) TCGA-VV-A829-01 15 23412171 23412171 C T RP11-467N20.5 Missense_Mutation p.G96S 0.43 possibly_damaging(0.495) TCGA-VV-A829-01 15 66618626 66618626 C T DIS3L Missense_Mutation p.H709Y 0.11 deleterious(0.02) benign(0.41) TCGA-VV-A829-01 16 21245084 21245084 C T ANKS4B Missense_Mutation p.A9V 0.38 deleterious(0) possibly_damaging(0.608) TCGA-VV-A829-01 17 18682011 18682011 G A FBXW10 Silent p.R853R 0.32 TCGA-VV-A829-01 17 44590392 44590392 A G LRRC37A2 Missense_Mutation p.N105S 0.11 tolerated(0.52) benign(0.264) TCGA-VV-A829-01 17 60650604 60650604 G A TLK2 Missense_Mutation p.E333K 0.45 tolerated(0.07) possibly_damaging(0.828) TCGA-VV-A829-01 17 7481180 7481180 T G EIF4A1 Missense_Mutation p.I314M 0.31 deleterious(0) possibly_damaging(0.894) TCGA-VV-A829-01 18 54270146 54270149 ATTT - TXNL1 3'UTR 0.36 TCGA-VV-A829-01 19 17397249 17397249 C T ANKLE1 Missense_Mutation p.P579L 0.45 deleterious(0.03) benign(0.196) TCGA-VV-A829-01 19 17688023 17688023 G A COLGALT1 Silent p.E323E 0.27 TCGA-VV-A829-01 19 19414811 19414811 A C SUGP1 Intron 0.44 TCGA-VV-A829-01 19 41012265 41012265 C T SPTBN4 Silent p.A596A 0.65 TCGA-VV-A829-01 1 151640951 151640951 G A SNX27 Missense_Mutation p.R330H 0.38 deleterious(0) possibly_damaging(0.882) TCGA-VV-A829-01 1 152280155 152280155 G A FLG Missense_Mutation p.R2403W 0.54 probably_damaging(0.982) TCGA-VV-A829-01 1 196887466 196887466 C T CFHR4 Missense_Mutation p.A555V 0.28 tolerated(0.29) possibly_damaging(0.499) TCGA-VV-A829-01 1 231488995 231488995 T C SPRTN Missense_Mutation p.M453T 0.34 tolerated(0.77) benign(0) TCGA-VV-A829-01 1 244218559 244218559 C T ZBTB18 Missense_Mutation p.R495C 0.32 deleterious(0) probably_damaging(0.997) TCGA-VV-A829-01 21 46047639 46047639 T C KRTAP10-9 Missense_Mutation p.V184A 0.39 tolerated(0.09) unknown(0) TCGA-VV-A829-01 2 120078765 120078765 G C C2orf76 Missense_Mutation p.T50S 0.36 tolerated(0.44) benign(0.008) TCGA-VV-A829-01 2 135911420 135911420 T C RAB3GAP1 Missense_Mutation p.F755L 0.06 deleterious(0) probably_damaging(0.999) TCGA-VV-A829-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-VV-A829-01 2 71896841 71896841 C T DYSF Silent p.L1917L 0.32 TCGA-VV-A829-01 2 95494763 95494763 T C ANKRD20A8P RNA 0.36 TCGA-VV-A829-01 3 150396333 150396333 G A FAM194A Missense_Mutation p.R374C 0.29 deleterious(0.03) possibly_damaging(0.729) TCGA-VV-A829-01 3 186917640 186917640 G A RTP1 Missense_Mutation p.E192K 0.64 deleterious(0.01) probably_damaging(0.997) TCGA-VV-A829-01 4 6596402 6596402 G A MAN2B2 Missense_Mutation p.A334T 0.28 tolerated(0.29) benign(0.015) TCGA-VV-A829-01 6 152419955 152419955 C T ESR1 Missense_Mutation p.R548C 0.43 tolerated(0.13) benign(0.038) TCGA-VV-A829-01 6 159657261 159657261 C G FNDC1 Missense_Mutation p.P1328A 0.45 deleterious(0.04) unknown(0) TCGA-VV-A829-01 6 56484991 56484994 TCTT - DST Intron 0.39 TCGA-VV-A829-01 7 100348461 100348461 G A ZAN Missense_Mutation p.R488H 0.44 probably_damaging(0.95) TCGA-VV-A829-01 7 62752768 62752768 T - ZNF733P RNA 0.20 TCGA-VV-A829-01 9 139407856 139407856 C - NOTCH1 Frame_Shift_Del p.E781Rfs*21 0.29 TCGA-VV-A829-01 X 39911568 39911568 C A BCOR Nonsense_Mutation p.E1688* 0.86 TCGA-VV-A86M-01 10 111892082 111892082 C G ADD3 Silent p.L584L 0.49 TCGA-VV-A86M-01 17 18023771 18023771 C T MYO15A Missense_Mutation p.R553W 0.56 possibly_damaging(0.689) TCGA-VV-A86M-01 17 47486742 47486742 T - PHB Frame_Shift_Del p.D115Vfs*25 0.25 TCGA-VV-A86M-01 17 7578443 7578443 A T TP53 Missense_Mutation p.Y163N 0.40 deleterious(0) probably_damaging(1) TCGA-VV-A86M-01 1 111985359 111985359 A G WDR77 Missense_Mutation p.L239P 0.39 deleterious(0) probably_damaging(0.929) TCGA-VV-A86M-01 22 37603076 37603076 G A SSTR3 Missense_Mutation p.T256M 0.07 deleterious(0) probably_damaging(1) TCGA-VV-A86M-01 22 38877361 38877361 T C KDELR3 Missense_Mutation p.W166R 0.06 deleterious(0) probably_damaging(0.997) TCGA-VV-A86M-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-VV-A86M-01 3 119336927 119336927 G T PLA1A Missense_Mutation p.E272D 0.03 deleterious(0.03) possibly_damaging(0.792) TCGA-VV-A86M-01 5 156592666 156592666 C T FAM71B Missense_Mutation p.V172I 0.08 tolerated(0.63) benign(0.045) TCGA-VV-A86M-01 6 108202455 108202455 C T SEC63 Splice_Site p.X612_splice 0.46 TCGA-VV-A86M-01 6 28056763 28056763 T C ZNF165 Missense_Mutation p.S325P 0.31 deleterious(0) possibly_damaging(0.515) TCGA-VV-A86M-01 6 33169244 33169244 A G SLC39A7 Silent p.G74G 0.42 TCGA-VV-A86M-01 9 33029962 33029962 G C DNAJA1 Missense_Mutation p.K130N 0.63 deleterious(0.01) benign(0.005) TCGA-VV-A86M-01 X 105450654 105450654 T A MUM1L1 Missense_Mutation p.I410K 0.46 deleterious(0) possibly_damaging(0.735) TCGA-VV-A86M-01 X 57146116 57146116 C G SPIN2B 3'UTR 0.33 TCGA-VV-A86M-01 X 76940454 76940454 T G ATRX Silent p.S213S 0.48 TCGA-VW-A7QS-01 10 7627946 7627946 T C ITIH5 Silent p.V342V 0.41 TCGA-VW-A7QS-01 10 96334429 96334429 T C HELLS Missense_Mutation p.L275P 0.21 deleterious(0) probably_damaging(0.991) TCGA-VW-A7QS-01 11 113857553 113857553 A C HTR3A Missense_Mutation p.Y346S 0.11 deleterious(0) probably_damaging(0.996) TCGA-VW-A7QS-01 11 18500458 18500458 T C LDHAL6A 3'UTR 0.04 TCGA-VW-A7QS-01 11 4936857 4936857 C T OR51G2 Missense_Mutation p.V13I 0.45 tolerated(0.35) unknown(0) TCGA-VW-A7QS-01 11 6644395 6644395 T C DCHS1 Missense_Mutation p.T2838A 0.38 tolerated(0.06) benign(0.358) TCGA-VW-A7QS-01 12 113906197 113906197 G A LHX5 Missense_Mutation p.T137M 0.41 tolerated(0.06) benign(0.042) TCGA-VW-A7QS-01 12 936450 936450 G T WNK1 Intron 0.08 TCGA-VW-A7QS-01 13 77667377 77667377 C T MYCBP2 Silent p.P3392P 0.45 TCGA-VW-A7QS-01 14 21502144 21502144 G C RNASE13 Missense_Mutation p.L102V 0.42 tolerated(0.11) benign(0.068) TCGA-VW-A7QS-01 14 23889440 23889440 G A MYH7 Missense_Mutation p.R1114C 0.05 deleterious(0) possibly_damaging(0.654) TCGA-VW-A7QS-01 17 64684479 64684479 G A PRKCA Missense_Mutation p.R249Q 0.41 tolerated(0.13) benign(0.378) TCGA-VW-A7QS-01 18 47369674 47369674 G A MYO5B Silent p.N1516N 0.47 TCGA-VW-A7QS-01 19 10158049 10158049 A G C3P1 RNA 0.16 TCGA-VW-A7QS-01 19 17000696 17000696 G A F2RL3 Missense_Mutation p.R141H 0.48 tolerated(0.64) benign(0.005) TCGA-VW-A7QS-01 19 7528785 7528785 C T ARHGEF18 Missense_Mutation p.P718L 0.48 tolerated(1) benign(0) TCGA-VW-A7QS-01 19 8923829 8923829 C G ZNF558 Missense_Mutation p.R106T 0.60 tolerated(0.29) benign(0.002) TCGA-VW-A7QS-01 1 11182158 11182158 A C MTOR Missense_Mutation p.L2230V 0.79 deleterious(0) probably_damaging(0.992) TCGA-VW-A7QS-01 1 158549195 158549195 G A OR10X1 Silent p.C165C 0.12 TCGA-VW-A7QS-01 1 196309662 196309662 T C KCNT2 Missense_Mutation p.N531S 0.14 tolerated(0.43) possibly_damaging(0.471) TCGA-VW-A7QS-01 1 223285750 223285750 C T TLR5 Silent p.L208L 0.40 TCGA-VW-A7QS-01 1 235617570 235617570 C T B3GALNT2 Silent p.P403P 0.30 TCGA-VW-A7QS-01 20 25507065 25507065 G T NINL Silent p.L53L 0.39 TCGA-VW-A7QS-01 20 39832611 39832611 T C ZHX3 Missense_Mutation p.N316D 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-VW-A7QS-01 21 17203875 17203876 TT - USP25 Frame_Shift_Del p.F641Wfs*4 0.32 TCGA-VW-A7QS-01 2 103317573 103317573 G A SLC9A2 Missense_Mutation p.R544Q 0.42 deleterious(0.01) possibly_damaging(0.466) TCGA-VW-A7QS-01 2 128350379 128350379 G A MYO7B Missense_Mutation p.R668Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-VW-A7QS-01 2 152425801 152425801 G A NEB Missense_Mutation p.A5839V 0.46 benign(0.288) TCGA-VW-A7QS-01 2 166615936 166615936 C T GALNT3 Missense_Mutation p.R328H 0.44 tolerated(0.16) probably_damaging(1) TCGA-VW-A7QS-01 2 207482469 207482469 C T ADAM23 3'UTR 0.47 TCGA-VW-A7QS-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-VW-A7QS-01 2 48040489 48040489 A T FBXO11 Missense_Mutation p.I704K 0.34 deleterious(0) probably_damaging(0.993) TCGA-VW-A7QS-01 3 122849400 122849400 G A PDIA5 Missense_Mutation p.D283N 0.41 deleterious(0.05) possibly_damaging(0.458) TCGA-VW-A7QS-01 3 138255959 138255962 AAAC - CEP70 Intron 0.39 TCGA-VW-A7QS-01 3 38888491 38888491 G A SCN11A Silent p.T1690T 0.49 TCGA-VW-A7QS-01 3 51979052 51979052 C T PARP3 Nonsense_Mutation p.Q232* 0.38 TCGA-VW-A7QS-01 4 170610267 170610267 G A CLCN3 Silent p.A164A 0.47 TCGA-VW-A7QS-01 4 175603980 175603980 G A GLRA3 Nonsense_Mutation p.R229* 0.48 TCGA-VW-A7QS-01 5 66459037 66459037 G A MAST4 Missense_Mutation p.G1344R 0.08 probably_damaging(0.996) TCGA-VW-A7QS-01 6 31636397 31636397 G A CSNK2B-LY6G5B-1181 Missense_Mutation p.R86H 0.53 deleterious(0) probably_damaging(0.996) TCGA-VW-A7QS-01 6 42147158 42147158 C T GUCA1A 3'UTR 0.24 TCGA-VW-A7QS-01 7 107340552 107340552 A C SLC26A4 Missense_Mutation p.I547L 0.30 deleterious(0) probably_damaging(0.999) TCGA-VW-A7QS-01 7 91630393 91630396 AGAC - AKAP9 Frame_Shift_Del p.R388Sfs*6 0.22 TCGA-VW-A7QS-01 8 99441273 99441273 G A KCNS2 Missense_Mutation p.E356K 0.39 tolerated(0.69) benign(0.04) TCGA-VW-A7QS-01 9 109691748 109691748 T G ZNF462 Missense_Mutation p.F1852C 0.06 probably_damaging(0.995) TCGA-VW-A7QS-01 9 139412283 139412285 GTT - NOTCH1 In_Frame_Del p.N454del 0.58 TCGA-VW-A7QS-01 9 139412664 139412664 C A NOTCH1 Missense_Mutation p.G394C 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-VW-A7QS-01 9 141070071 141070071 G A TUBBP5 RNA 0.33 TCGA-VW-A7QS-01 9 86588288 86588289 AA - HNRNPK Frame_Shift_Del p.F143* 0.10 TCGA-VW-A7QS-01 X 1325396 1325396 G A CRLF2 Silent p.D93D 0.11 TCGA-VW-A7QS-01 X 69424320 69424320 C T DGAT2L6 Silent p.R271R 0.42 TCGA-VW-A7QS-01 X 9907313 9907313 G A SHROOM2 Silent p.A1406A 0.41 TCGA-VW-A8FI-01 10 103753315 103753315 G A C10orf76 Nonsense_Mutation p.R419* 0.59 TCGA-VW-A8FI-01 10 16957131 16957131 G T CUBN Missense_Mutation p.D2417E 0.74 tolerated(0.34) benign(0.001) TCGA-VW-A8FI-01 10 21462709 21462709 G A NEBL-AS1 5'Flank 0.54 TCGA-VW-A8FI-01 10 99640052 99640052 C T CRTAC1 Silent p.K591K 0.67 TCGA-VW-A8FI-01 11 2432644 2432644 C T TRPM5 Missense_Mutation p.R907H 0.09 deleterious(0) probably_damaging(1) TCGA-VW-A8FI-01 11 3249242 3249242 G A MRGPRE Missense_Mutation p.A262V 0.38 tolerated(0.06) benign(0.188) TCGA-VW-A8FI-01 11 5686810 5686810 C A TRIM5 Intron 0.32 TCGA-VW-A8FI-01 11 59283161 59283161 C T OR4D9 Missense_Mutation p.A259V 0.44 tolerated(0.13) possibly_damaging(0.513) TCGA-VW-A8FI-01 12 105151445 105151445 C T CHST11 Missense_Mutation p.T308M 0.38 deleterious(0) possibly_damaging(0.701) TCGA-VW-A8FI-01 12 129566495 129566495 G A TMEM132D Missense_Mutation p.R578W 0.48 deleterious(0) probably_damaging(0.992) TCGA-VW-A8FI-01 12 21728850 21728850 C T GYS2 Missense_Mutation p.A149T 0.45 tolerated(1) benign(0.058) TCGA-VW-A8FI-01 12 48196010 48196010 C T HDAC7 Missense_Mutation p.A23T 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-VW-A8FI-01 12 81101548 81101548 G C MYF6 Missense_Mutation p.G17A 0.25 tolerated(0.12) possibly_damaging(0.584) TCGA-VW-A8FI-01 13 113536431 113536431 G A ATP11A 3'UTR 0.34 TCGA-VW-A8FI-01 13 32653043 32653043 C T FRY Missense_Mutation p.P48L 0.38 deleterious(0.02) benign(0.066) TCGA-VW-A8FI-01 14 106110412 106110412 C T IGHG2 Silent p.P108P 0.40 TCGA-VW-A8FI-01 14 68265336 68265336 G A ZFYVE26 Missense_Mutation p.A548V 0.37 tolerated(0.14) benign(0.022) TCGA-VW-A8FI-01 14 71227862 71227862 G T MAP3K9 Missense_Mutation p.S286R 0.54 tolerated(0.18) possibly_damaging(0.653) TCGA-VW-A8FI-01 14 75151317 75151317 C T AREL1 Missense_Mutation p.R28H 0.50 tolerated_low_confidence(0.09) probably_damaging(0.991) TCGA-VW-A8FI-01 16 1469841 1469841 A - C16orf91 3'Flank 0.36 TCGA-VW-A8FI-01 16 57054711 57054711 C T NLRC5 Silent p.N29N 0.08 TCGA-VW-A8FI-01 16 71007758 71007758 C T HYDIN Missense_Mutation p.V1735I 0.12 benign(0.075) TCGA-VW-A8FI-01 17 11666834 11666834 C T DNAH9 Missense_Mutation p.T2358M 0.32 benign(0.007) TCGA-VW-A8FI-01 17 26084290 26084290 C T NOS2 Silent p.L1148L 0.39 TCGA-VW-A8FI-01 17 7578400 7578400 G T TP53 Missense_Mutation p.P177H 0.48 deleterious(0) possibly_damaging(0.506) TCGA-VW-A8FI-01 17 7578479 7578479 G C TP53 Missense_Mutation p.P151A 0.28 deleterious(0.01) possibly_damaging(0.902) TCGA-VW-A8FI-01 18 22807028 22807028 T C ZNF521 Missense_Mutation p.Y285C 0.41 deleterious(0.05) probably_damaging(0.995) TCGA-VW-A8FI-01 18 346800 346800 C T COLEC12 Silent p.A274A 0.33 TCGA-VW-A8FI-01 19 20229690 20229690 C A ZNF90 Missense_Mutation p.H443N 0.26 deleterious(0) probably_damaging(0.999) TCGA-VW-A8FI-01 19 50939061 50939061 T C MYBPC2 Silent p.T46T 0.35 TCGA-VW-A8FI-01 1 109883360 109883360 C T SORT1 Missense_Mutation p.S417N 0.49 tolerated(0.25) benign(0.085) TCGA-VW-A8FI-01 1 157667363 157667364 TT - FCRL3 Intron 0.30 TCGA-VW-A8FI-01 1 158301240 158301240 G A CD1B 5'UTR 0.38 TCGA-VW-A8FI-01 1 159275806 159275806 G T FCER1A Missense_Mutation p.E120D 0.36 tolerated(0.27) benign(0.006) TCGA-VW-A8FI-01 1 161192119 161192119 A G AL590714.1 Silent p.V18V 0.44 TCGA-VW-A8FI-01 1 1957053 1957053 G A GABRD Missense_Mutation p.V116M 0.39 deleterious(0) probably_damaging(1) TCGA-VW-A8FI-01 1 23758408 23758408 C T ASAP3 Missense_Mutation p.R776H 0.32 tolerated(0.18) benign(0.001) TCGA-VW-A8FI-01 1 55563343 55563343 C T USP24 Silent p.L1881L 0.39 TCGA-VW-A8FI-01 1 905681 905681 C T PLEKHN1 Nonsense_Mutation p.R70* 0.30 TCGA-VW-A8FI-01 20 61981649 61981649 T C CHRNA4 Missense_Mutation p.I372V 0.21 tolerated(0.24) benign(0.042) TCGA-VW-A8FI-01 21 11039052 11039052 T A BAGE2 RNA 0.04 TCGA-VW-A8FI-01 21 16339588 16339588 T - NRIP1 Frame_Shift_Del p.Q309Rfs*28 0.18 TCGA-VW-A8FI-01 21 32253792 32253792 G A KRTAP11-1 Missense_Mutation p.R18C 0.30 tolerated(0.16) possibly_damaging(0.816) TCGA-VW-A8FI-01 21 44323624 44323624 G C NDUFV3 Missense_Mutation p.A168P 0.28 tolerated(0.21) benign(0.434) TCGA-VW-A8FI-01 22 39262562 39262562 G A CBX6 Silent p.P297P 0.23 TCGA-VW-A8FI-01 2 128628858 128628858 A G AMMECR1L Silent p.N161N 0.47 TCGA-VW-A8FI-01 2 179489454 179489454 G A TTN Silent p.P14851P 0.47 TCGA-VW-A8FI-01 2 179640529 179640529 C T TTN Missense_Mutation p.R2021Q 0.11 TCGA-VW-A8FI-01 2 207170473 207170473 T C ZDBF2 Silent p.S407S 0.47 TCGA-VW-A8FI-01 2 220497018 220497018 G A SLC4A3 Missense_Mutation p.R359H 0.51 deleterious(0) benign(0.002) TCGA-VW-A8FI-01 3 10417231 10417231 C T ATP2B2 Silent p.T433T 0.34 TCGA-VW-A8FI-01 3 178952084 178952084 C T PIK3CA Missense_Mutation p.H1047Y 0.40 tolerated(1) benign(0.008) TCGA-VW-A8FI-01 3 196387651 196387651 C T NRROS Silent p.T379T 0.32 TCGA-VW-A8FI-01 3 47887324 47887324 A G DHX30 Missense_Mutation p.I358M 0.49 tolerated(0.24) benign(0.008) TCGA-VW-A8FI-01 3 63975932 63975932 T A ATXN7 Missense_Mutation p.L481Q 0.47 tolerated(0.21) probably_damaging(0.991) TCGA-VW-A8FI-01 4 48139472 48139472 T C TEC Missense_Mutation p.I619M 0.29 deleterious(0.02) possibly_damaging(0.596) TCGA-VW-A8FI-01 4 80246628 80246628 G A NAA11 Missense_Mutation p.P135L 0.33 deleterious(0.02) benign(0.133) TCGA-VW-A8FI-01 5 140203424 140203424 C T PCDHA5 Silent p.P688P 0.24 TCGA-VW-A8FI-01 5 37293066 37293066 T G NUP155 Missense_Mutation p.K1318Q 0.09 tolerated(0.18) possibly_damaging(0.459) TCGA-VW-A8FI-01 6 26370798 26370798 G A BTN3A2 Missense_Mutation p.G228S 0.06 tolerated(0.45) benign(0.003) TCGA-VW-A8FI-01 6 34511928 34511928 G A SPDEF Missense_Mutation p.A102V 0.48 tolerated(0.1) benign(0.032) TCGA-VW-A8FI-01 6 50011490 50011490 G A DEFB112 Missense_Mutation p.T47I 0.06 tolerated(0.51) benign(0) TCGA-VW-A8FI-01 6 71234964 71234964 G A FAM135A Missense_Mutation p.G726E 0.10 tolerated(0.24) benign(0.004) TCGA-VW-A8FI-01 7 11521486 11521486 G T THSD7A Missense_Mutation p.T649N 0.04 deleterious(0) probably_damaging(0.988) TCGA-VW-A8FI-01 7 143771612 143771612 G A OR2A25 Missense_Mutation p.M100I 0.35 tolerated(0.12) benign(0.001) TCGA-VW-A8FI-01 7 24720070 24720070 G A MPP6 Silent p.P459P 0.30 TCGA-VW-A8FI-01 7 43916839 43916839 C T URGCP Silent p.Q741Q 0.28 TCGA-VW-A8FI-01 7 82545708 82545708 C T PCLO Missense_Mutation p.S3865N 0.27 unknown(0) TCGA-VW-A8FI-01 8 10469466 10469466 C T RP1L1 Silent p.Q714Q 0.42 TCGA-VW-A8FI-01 8 130789815 130789815 G A GSDMC Missense_Mutation p.R7C 0.36 tolerated(0.19) benign(0.15) TCGA-VW-A8FI-01 8 145667765 145667765 G A TONSL Silent p.R203R 0.40 TCGA-VW-A8FI-01 9 99284801 99284801 C T CDC14B Missense_Mutation p.A444T 0.39 tolerated(0.58) benign(0.002) TCGA-VW-A8FI-01 X 26212102 26212102 G A MAGEB6 Missense_Mutation p.A47T 0.84 tolerated(0.56) benign(0.048) TCGA-VW-A8FI-01 X 37026705 37026705 C T FAM47C Silent p.D74D 0.76 TCGA-VW-A8FI-01 X 47500629 47500629 A G ELK1 Splice_Site p.X70_splice 0.84 TCGA-W9-A837-01 11 34473715 34473715 A G CAT Silent p.G147G 0.31 TCGA-W9-A837-01 11 6024219 6024219 C T OR56A4 Missense_Mutation p.A54T 0.36 tolerated(0.4) benign(0.03) TCGA-W9-A837-01 11 61675752 61675752 G T RAB3IL1 Missense_Mutation p.P13Q 0.43 deleterious_low_confidence(0.03) benign(0.058) TCGA-W9-A837-01 11 62300247 62300247 G A AHNAK Silent p.L548L 0.04 TCGA-W9-A837-01 12 131476803 131476803 C A GPR133 Missense_Mutation p.P278T 0.06 deleterious(0.02) probably_damaging(0.938) TCGA-W9-A837-01 14 35074873 35074873 T C SNX6 Silent p.L119L 0.09 TCGA-W9-A837-01 15 41769448 41769448 T A RTF1 Missense_Mutation p.L549Q 0.10 deleterious(0) probably_damaging(0.978) TCGA-W9-A837-01 16 1308192 1308192 G A TPSD1 Missense_Mutation p.C218Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-W9-A837-01 16 1545588 1545588 G A TELO2 Missense_Mutation p.V193I 0.35 tolerated(0.49) benign(0.002) TCGA-W9-A837-01 16 67316416 67316416 G A PLEKHG4 Missense_Mutation p.D422N 0.12 deleterious(0.01) benign(0.078) TCGA-W9-A837-01 17 10628335 10628335 C G TMEM220 Missense_Mutation p.E94Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-W9-A837-01 17 11584134 11584134 G A DNAH9 Missense_Mutation p.R1224H 0.12 probably_damaging(0.96) TCGA-W9-A837-01 17 11684410 11684410 A G DNAH9 Missense_Mutation p.D2546G 0.09 probably_damaging(0.989) TCGA-W9-A837-01 19 18888093 18888093 C T CRTC1 Silent p.I618I 0.41 TCGA-W9-A837-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.08 tolerated(0.06) benign(0.006) TCGA-W9-A837-01 1 228481238 228481238 C T OBSCN Silent p.R4113R 0.25 TCGA-W9-A837-01 1 248059036 248059036 C T OR2W3 Missense_Mutation p.R50W 0.12 tolerated(0.18) benign(0.014) TCGA-W9-A837-01 2 120128319 120128319 G - DBI Frame_Shift_Del p.M108Cfs*16 0.17 TCGA-W9-A837-01 2 166010994 166010994 C T SCN3A Missense_Mutation p.E450K 0.05 deleterious(0.02) probably_damaging(0.956) TCGA-W9-A837-01 2 207171695 207171695 G A ZDBF2 Missense_Mutation p.V815I 0.08 tolerated(0.2) benign(0.355) TCGA-W9-A837-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-W9-A837-01 3 125831672 125831672 G A ALDH1L1 Nonsense_Mutation p.R722* 0.10 TCGA-W9-A837-01 3 49210376 49210376 A G KLHDC8B Silent p.T58T 0.08 TCGA-W9-A837-01 5 150932752 150932752 C G FAT2 Missense_Mutation p.W1381S 0.39 probably_damaging(0.998) TCGA-W9-A837-01 5 173380262 173380265 AGAT - CPEB4 Frame_Shift_Del p.D652Nfs*62 0.21 TCGA-W9-A837-01 5 36972046 36972046 G A NIPBL Splice_Site p.X258_splice 0.16 TCGA-W9-A837-01 5 36985023 36985023 C T NIPBL Missense_Mutation p.L581F 0.08 tolerated_low_confidence(0.14) benign(0.024) TCGA-W9-A837-01 5 72866466 72866466 C G UTP15 Silent p.L201L 0.09 TCGA-W9-A837-01 6 112496653 112496653 C T LAMA4 Missense_Mutation p.E407K 0.42 tolerated(0.85) benign(0.008) TCGA-W9-A837-01 6 149900982 149900982 G T GINM1 Missense_Mutation p.D148Y 0.16 deleterious(0) probably_damaging(0.957) TCGA-W9-A837-01 6 33169301 33169301 C - SLC39A7 Frame_Shift_Del p.H94Mfs*51 0.27 TCGA-W9-A837-01 7 135378959 135378959 C G SLC13A4 Missense_Mutation p.K348N 0.04 tolerated(0.06) probably_damaging(0.988) TCGA-W9-A837-01 8 142178542 142178542 C T DENND3 Silent p.G651G 0.38 TCGA-W9-A837-01 9 84608365 84608365 G A SPATA31D1 Missense_Mutation p.V994I 0.42 tolerated(0.1) benign(0) TCGA-W9-A837-01 9 90500387 90500387 C T SPATA31E1 Missense_Mutation p.R329W 0.56 deleterious(0) benign(0.054) TCGA-WH-A86K-01 10 133769278 133769278 C - PPP2R2D Frame_Shift_Del p.S360Rfs*76 0.30 TCGA-WH-A86K-01 10 135440109 135440109 G A FRG2B Silent p.T46T 0.38 TCGA-WH-A86K-01 10 76854454 76854454 G A DUSP13 Missense_Mutation p.R243W 0.41 deleterious(0.01) benign(0.012) TCGA-WH-A86K-01 10 88950272 88950272 C T FAM35A Silent p.V780V 0.26 TCGA-WH-A86K-01 12 53069171 53069171 C T KRT1 Missense_Mutation p.G581R 0.42 deleterious_low_confidence(0.04) unknown(0) TCGA-WH-A86K-01 12 6128535 6128535 G A VWF Missense_Mutation p.A1350V 0.07 tolerated(0.22) benign(0) TCGA-WH-A86K-01 14 20019849 20019849 G A POTEM Silent p.D124D 0.68 TCGA-WH-A86K-01 14 24787935 24787935 C T ADCY4 Silent p.P1002P 0.43 TCGA-WH-A86K-01 15 25315644 25315644 A G SNORD116-8 RNA 0.39 TCGA-WH-A86K-01 15 85669478 85669478 G A PDE8A Missense_Mutation p.R709K 0.15 tolerated(0.38) benign(0.001) TCGA-WH-A86K-01 16 19451395 19451395 A G TMC5 Missense_Mutation p.E12G 0.36 tolerated_low_confidence(0.14) benign(0.006) TCGA-WH-A86K-01 16 81236151 81236151 A G PKD1L2 Missense_Mutation p.V366A 0.40 deleterious(0.03) benign(0.052) TCGA-WH-A86K-01 16 812765 812765 G A MSLN Missense_Mutation p.G29R 0.41 deleterious(0) probably_damaging(1) TCGA-WH-A86K-01 17 1578513 1578513 C T PRPF8 Missense_Mutation p.R998H 0.36 deleterious(0) probably_damaging(0.998) TCGA-WH-A86K-01 17 33495212 33495212 A T UNC45B Silent p.A428A 0.41 TCGA-WH-A86K-01 17 6945197 6945197 G T SLC16A11 Missense_Mutation p.T406N 0.32 deleterious(0.05) benign(0.169) TCGA-WH-A86K-01 17 72875555 72875555 G C FADS6 Silent p.L295L 0.13 TCGA-WH-A86K-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.53 deleterious(0) probably_damaging(0.998) TCGA-WH-A86K-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.34 deleterious(0) probably_damaging(1) TCGA-WH-A86K-01 18 51748784 51748784 A - MBD2 Intron 0.20 TCGA-WH-A86K-01 18 7033055 7033055 G A LAMA1 Silent p.A697A 0.50 TCGA-WH-A86K-01 19 15483676 15483676 G A AKAP8 Missense_Mutation p.R283W 0.29 deleterious(0) possibly_damaging(0.689) TCGA-WH-A86K-01 19 42873083 42873083 C T MEGF8 Silent p.N2123N 0.36 TCGA-WH-A86K-01 19 51132650 51132650 C T SYT3 Silent p.R394R 0.11 TCGA-WH-A86K-01 19 51729110 51729110 A G CD33 Missense_Mutation p.H157R 0.31 tolerated(1) benign(0.015) TCGA-WH-A86K-01 19 53057655 53057655 T C ZNF808 Missense_Mutation p.S496P 0.35 deleterious(0.02) probably_damaging(0.98) TCGA-WH-A86K-01 19 831865 831865 G A AZU1 Silent p.P248P 0.33 TCGA-WH-A86K-01 1 156131199 156131199 G T SEMA4A Silent p.L291L 0.37 TCGA-WH-A86K-01 1 28285340 28285340 C T SMPDL3B Silent p.L453L 0.31 TCGA-WH-A86K-01 20 32255602 32255602 G C ACTL10 Missense_Mutation p.R100P 0.37 tolerated(0.09) benign(0.009) TCGA-WH-A86K-01 20 4713258 4713258 T A PRNT Missense_Mutation p.D22V 0.54 tolerated_low_confidence(0.23) possibly_damaging(0.908) TCGA-WH-A86K-01 2 102992417 102992417 G T IL18R1 Missense_Mutation p.K173N 0.29 deleterious(0.01) probably_damaging(0.954) TCGA-WH-A86K-01 2 109365547 109365547 G A RANBP2 Missense_Mutation p.R412Q 0.14 tolerated(1) benign(0) TCGA-WH-A86K-01 2 207615788 207615788 C T MDH1B Missense_Mutation p.V308M 0.33 deleterious(0) probably_damaging(0.99) TCGA-WH-A86K-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-WH-A86K-01 2 25470556 25470556 C T DNMT3A Nonsense_Mutation p.W306* 0.46 TCGA-WH-A86K-01 2 37035700 37035700 G A VIT Missense_Mutation p.R492Q 0.42 deleterious(0) probably_damaging(0.994) TCGA-WH-A86K-01 2 99863226 99863226 C T LYG2 Missense_Mutation p.R34H 0.22 tolerated(0.32) benign(0.033) TCGA-WH-A86K-01 3 170928956 170928956 G - TNIK Frame_Shift_Del p.Y86Mfs*19 0.22 TCGA-WH-A86K-01 3 9768379 9768379 G A CPNE9 Missense_Mutation p.V459I 0.33 tolerated(0.12) benign(0.228) TCGA-WH-A86K-01 5 43298628 43298628 G C HMGCS1 Missense_Mutation p.S147C 0.06 deleterious(0) probably_damaging(0.919) TCGA-WH-A86K-01 6 10430123 10430123 A G LINC00518 RNA 0.17 TCGA-WH-A86K-01 6 25967064 25967064 A T TRIM38 Missense_Mutation p.E105V 0.46 deleterious(0.04) probably_damaging(0.996) TCGA-WH-A86K-01 6 26247132 26247132 T C HIST1H4G Missense_Mutation p.D25G 0.31 deleterious(0.03) benign(0.33) TCGA-WH-A86K-01 6 31379100 31379100 C T MICA Nonsense_Mutation p.R193* 0.30 TCGA-WH-A86K-01 6 47846506 47846506 C T PTCHD4 Missense_Mutation p.V692I 0.12 tolerated(0.58) probably_damaging(0.959) TCGA-WH-A86K-01 6 7581050 7581050 G T DSP Nonsense_Mutation p.E1543* 0.39 TCGA-WH-A86K-01 7 56127963 56127967 GAGAA - CCT6A Frame_Shift_Del p.E358Vfs*5 0.29 TCGA-WH-A86K-01 7 73768332 73768332 C A CLIP2 Silent p.T267T 0.43 TCGA-WH-A86K-01 8 30210240 30210240 C T TUBBP1 RNA 0.31 TCGA-WH-A86K-01 8 56270245 56270245 C T XKR4 Missense_Mutation p.H272Y 0.10 deleterious(0.01) possibly_damaging(0.699) TCGA-WH-A86K-01 8 65527680 65527680 G A CYP7B1 Silent p.D320D 0.38 TCGA-WH-A86K-01 8 68139489 68139489 G C ARFGEF1 Missense_Mutation p.Q1267E 0.35 deleterious(0) probably_damaging(0.996) TCGA-WH-A86K-01 9 138589409 138589409 G A SOHLH1 Missense_Mutation p.S137L 0.15 tolerated(0.17) possibly_damaging(0.776) TCGA-WH-A86K-01 X 107084269 107084269 C G MID2 Missense_Mutation p.T125S 0.65 tolerated_low_confidence(0.69) benign(0.05) TCGA-WY-A858-01 10 51769588 51769588 G A AGAP6 Missense_Mutation p.R568H 0.21 tolerated(0.1) benign(0.052) TCGA-WY-A858-01 12 55725991 55725991 C T OR6C3 Silent p.N169N 0.21 TCGA-WY-A858-01 12 56998880 56998880 G A BAZ2A Missense_Mutation p.P911S 0.38 deleterious(0) probably_damaging(0.998) TCGA-WY-A858-01 12 94673311 94673314 TCAG - PLXNC1 Frame_Shift_Del p.V1222Mfs*20 0.29 TCGA-WY-A858-01 13 99908051 99908051 G A GPR18 Missense_Mutation p.L26F 0.08 tolerated(0.13) possibly_damaging(0.894) TCGA-WY-A858-01 14 100615600 100615600 A G DEGS2 Missense_Mutation p.V177A 0.30 deleterious(0.05) benign(0.084) TCGA-WY-A858-01 14 70442502 70442502 C - SMOC1 Frame_Shift_Del p.S150Lfs*18 0.19 TCGA-WY-A858-01 15 49935734 49935734 A G DTWD1 Missense_Mutation p.K292E 0.34 deleterious(0.01) possibly_damaging(0.895) TCGA-WY-A858-01 15 63637702 63637702 C T CA12 Missense_Mutation p.V135I 0.34 tolerated(0.63) benign(0.019) TCGA-WY-A858-01 16 30583424 30583424 G C ZNF688 5'UTR 0.19 TCGA-WY-A858-01 17 10411266 10411266 G A MYH1 Silent p.G635G 0.43 TCGA-WY-A858-01 17 3653745 3653745 A G ITGAE Missense_Mutation p.L642P 0.09 deleterious(0) probably_damaging(0.999) TCGA-WY-A858-01 17 4718863 4718863 G A PLD2 Silent p.L422L 0.23 TCGA-WY-A858-01 17 56294063 56294063 C T MKS1 Silent p.E75E 0.30 TCGA-WY-A858-01 17 64224315 64224315 C T APOH Splice_Site p.X22_splice 0.37 TCGA-WY-A858-01 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.31 TCGA-WY-A858-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.10 deleterious(0) probably_damaging(0.997) TCGA-WY-A858-01 17 7578479 7578479 G A TP53 Missense_Mutation p.P151S 0.32 deleterious(0.01) possibly_damaging(0.876) TCGA-WY-A858-01 19 11135109 11135111 AAG - SMARCA4 In_Frame_Del p.K1027del 0.41 TCGA-WY-A858-01 19 498503 498503 G A MADCAM1 Silent p.P115P 0.21 TCGA-WY-A858-01 1 236700805 236700805 G A LGALS8 Silent p.P18P 0.43 TCGA-WY-A858-01 1 46743501 46743503 GAG - RAD54L In_Frame_Del p.E629del 0.17 TCGA-WY-A858-01 20 49366352 49366352 A G PARD6B Missense_Mutation p.D149G 0.07 deleterious(0) probably_damaging(1) TCGA-WY-A858-01 2 179419409 179419409 C G TTN Missense_Mutation p.W29555C 0.26 TCGA-WY-A858-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-WY-A858-01 3 105266056 105266057 TA - ALCAM Frame_Shift_Del p.Y390Cfs*10 0.19 TCGA-WY-A858-01 3 108072600 108072603 ACAA - HHLA2 Frame_Shift_Del p.N132Kfs*4 0.25 TCGA-WY-A858-01 3 111983138 111983138 C T SLC9C1 Missense_Mutation p.G311R 0.26 deleterious(0) probably_damaging(1) TCGA-WY-A858-01 3 25792628 25792628 A G NGLY1 Missense_Mutation p.S207P 0.17 deleterious(0) benign(0.001) TCGA-WY-A858-01 3 47307320 47307320 G C KIF9 Silent p.L272L 0.31 TCGA-WY-A858-01 3 47450743 47450743 G A PTPN23 Missense_Mutation p.R578H 0.29 unknown(0) TCGA-WY-A858-01 4 186267775 186267775 T C SNX25 Missense_Mutation p.S594P 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-WY-A858-01 6 133032924 133032924 T C VNN1 Missense_Mutation p.R89G 0.25 deleterious(0) possibly_damaging(0.524) TCGA-WY-A858-01 7 100189399 100189399 T C FBXO24 Silent p.D182D 0.17 TCGA-WY-A858-01 8 11180232 11180232 G A MTMR9 Missense_Mutation p.V529I 0.20 tolerated(0.18) benign(0.13) TCGA-WY-A858-01 8 143603376 143603378 CTT - BAI1 In_Frame_Del p.F1026del 0.42 TCGA-WY-A858-01 9 127623796 127623798 CTT - RPL35 In_Frame_Del p.K14del 0.28 TCGA-WY-A858-01 9 132595829 132595829 T C C9orf78 Intron 0.36 TCGA-WY-A858-01 X 107938545 107938545 G T COL4A5 Missense_Mutation p.G1624C 0.25 probably_damaging(1) TCGA-WY-A858-01 X 13767612 13767612 A G OFD1 Missense_Mutation p.R299G 0.06 deleterious(0) probably_damaging(0.957) TCGA-WY-A858-01 X 140996487 140996487 T C MAGEC1 Silent p.F1099F 0.21 TCGA-WY-A858-01 X 149013818 149013818 T A MAGEA8 Missense_Mutation p.Y258N 0.16 deleterious(0) probably_damaging(1) TCGA-WY-A858-01 X 75649951 75649951 T G MAGEE1 Missense_Mutation p.I543S 0.29 deleterious(0) probably_damaging(0.945) TCGA-WY-A858-01 X 76918921 76918921 T - ATRX Frame_Shift_Del p.K1357Rfs*18 0.25 TCGA-WY-A859-01 11 59271628 59271628 G T OR4D11 Missense_Mutation p.A194S 0.37 deleterious(0.02) benign(0.119) TCGA-WY-A859-01 12 2062420 2062420 G C DCP1B Missense_Mutation p.T229R 0.44 deleterious(0) possibly_damaging(0.714) TCGA-WY-A859-01 13 38357404 38357404 C A TRPC4 Missense_Mutation p.V23L 0.16 deleterious(0.01) possibly_damaging(0.858) TCGA-WY-A859-01 15 75641378 75641378 C G NEIL1 Silent p.A44A 0.29 TCGA-WY-A859-01 16 30793291 30793291 G C ZNF629 Missense_Mutation p.H786Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-WY-A859-01 16 3632640 3632640 G A SLX4 Silent p.G1736G 0.43 TCGA-WY-A859-01 16 48595409 48595409 T A N4BP1 Missense_Mutation p.E382V 0.29 deleterious(0) probably_damaging(0.999) TCGA-WY-A859-01 17 73895047 73895047 C T MRPL38 Missense_Mutation p.E343K 0.15 deleterious(0) possibly_damaging(0.787) TCGA-WY-A859-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.85 deleterious(0) probably_damaging(1) TCGA-WY-A859-01 19 35979707 35979707 G T KRTDAP Silent p.P41P 0.22 TCGA-WY-A859-01 19 9087491 9087491 G A MUC16 Missense_Mutation p.P1442S 0.15 unknown(0) TCGA-WY-A859-01 1 177929520 177929520 C T SEC16B Missense_Mutation p.E319K 0.33 tolerated(0.69) benign(0.34) TCGA-WY-A859-01 1 247654517 247654517 G A OR2W5 RNA 0.13 TCGA-WY-A859-01 1 26898725 26898725 G A RPS6KA1 Missense_Mutation p.G639S 0.15 tolerated(0.1) benign(0.12) TCGA-WY-A859-01 1 40029555 40029555 C A PABPC4 Missense_Mutation p.G498V 0.24 tolerated(0.12) benign(0.005) TCGA-WY-A859-01 1 40029556 40029556 C A PABPC4 Missense_Mutation p.G498W 0.24 deleterious(0.02) benign(0.173) TCGA-WY-A859-01 22 25145722 25145722 T C PIWIL3 Missense_Mutation p.K385R 0.05 tolerated(0.77) benign(0.079) TCGA-WY-A859-01 2 209113113 209113113 G T IDH1 Missense_Mutation p.R132S 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-WY-A859-01 2 219869028 219869028 G A CCDC108 Missense_Mutation p.P1734L 0.47 deleterious(0.01) possibly_damaging(0.493) TCGA-WY-A859-01 3 51450455 51450455 C A VPRBP Missense_Mutation p.V939F 0.15 deleterious(0) probably_damaging(0.989) TCGA-WY-A859-01 4 5630449 5630449 C - EVC2 Frame_Shift_Del p.E575Sfs*2 0.27 TCGA-WY-A859-01 6 126080335 126080335 C T HEY2 Missense_Mutation p.A134V 0.28 tolerated(0.28) possibly_damaging(0.464) TCGA-WY-A859-01 6 126080565 126080565 C T HEY2 Missense_Mutation p.R211C 0.06 deleterious(0.01) probably_damaging(0.943) TCGA-WY-A859-01 6 153075402 153075402 C A VIP Missense_Mutation p.T70K 0.26 tolerated(0.36) benign(0.055) TCGA-WY-A859-01 6 32918314 32918314 T G HLA-DMA Missense_Mutation p.K119Q 0.44 tolerated(0.83) benign(0.001) TCGA-WY-A859-01 7 100173893 100173893 C T LRCH4 Missense_Mutation p.D536N 0.46 tolerated(0.11) possibly_damaging(0.627) TCGA-WY-A859-01 7 128804401 128804401 C T TSPAN33 Silent p.G150G 0.06 TCGA-WY-A859-01 7 893044 893044 A G SUN1 Splice_Site p.X352_splice 0.08 TCGA-WY-A859-01 8 125551294 125551294 G C TATDN1 5'UTR 0.08 TCGA-WY-A859-01 8 33371070 33371070 C T TTI2 5'UTR 0.04 TCGA-WY-A859-01 9 127549423 127549423 G A OLFML2A Missense_Mutation p.R87H 0.36 deleterious(0) possibly_damaging(0.866) TCGA-WY-A859-01 9 131755536 131755536 T C NUP188 Missense_Mutation p.F901L 0.09 deleterious(0.01) probably_damaging(0.963) TCGA-WY-A859-01 9 21350375 21350375 A G IFNA6 Missense_Mutation p.I171T 0.23 deleterious(0) probably_damaging(0.996) TCGA-WY-A859-01 X 17750115 17750115 G T NHS Missense_Mutation p.S1475I 0.31 deleterious(0) probably_damaging(0.999) TCGA-WY-A859-01 X 23899026 23899026 G T APOO Missense_Mutation p.T18N 0.14 deleterious(0.04) benign(0.209) TCGA-WY-A859-01 X 38664286 38664286 C G MID1IP1 Missense_Mutation p.D29E 0.32 deleterious(0.01) probably_damaging(0.917) TCGA-WY-A859-01 X 77245264 77245264 C T ATP7A Silent p.N382N 0.63 TCGA-WY-A85A-01 10 50863161 50863161 C T CHAT Missense_Mutation p.P552L 0.07 deleterious(0) possibly_damaging(0.883) TCGA-WY-A85A-01 11 101375499 101375499 C T TRPC6 Silent p.R67R 0.43 TCGA-WY-A85A-01 11 6007178 6007178 T C OR52L1 Missense_Mutation p.K328R 0.39 tolerated(0.09) possibly_damaging(0.459) TCGA-WY-A85A-01 14 23889114 23889114 G A MYH7 Silent p.S1222S 0.37 TCGA-WY-A85A-01 17 29192788 29192788 G A ATAD5 Missense_Mutation p.G1068E 0.32 deleterious(0.01) possibly_damaging(0.542) TCGA-WY-A85A-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.73 deleterious(0) probably_damaging(0.998) TCGA-WY-A85A-01 19 11132515 11132515 G T SMARCA4 Missense_Mutation p.G911C 0.35 probably_damaging(0.997) TCGA-WY-A85A-01 1 103548438 103548441 TTCT - COL11A1 Frame_Shift_Del p.K65Ifs*40 0.40 TCGA-WY-A85A-01 1 16528979 16528979 G A ARHGEF19 Silent p.H666H 0.29 TCGA-WY-A85A-01 1 179078464 179078464 C T ABL2 Silent p.R646R 0.09 TCGA-WY-A85A-01 1 209969868 209969868 C A IRF6 Missense_Mutation p.Q68H 0.08 tolerated(0.08) possibly_damaging(0.878) TCGA-WY-A85A-01 1 45796886 45796886 G - MUTYH Frame_Shift_Del p.H479Tfs*9 0.28 TCGA-WY-A85A-01 1 47748073 47748073 C T STIL Missense_Mutation p.E398K 0.22 deleterious(0) probably_damaging(0.999) TCGA-WY-A85A-01 20 20484148 20484148 C T RALGAPA2 Silent p.V1685V 0.36 TCGA-WY-A85A-01 21 39672106 39672106 G A KCNJ15 Missense_Mutation p.G308D 0.43 deleterious(0.01) probably_damaging(1) TCGA-WY-A85A-01 2 145187587 145187588 TT - ZEB2 Frame_Shift_Del p.N27Lfs*2 0.24 TCGA-WY-A85A-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-WY-A85A-01 5 140799049 140799049 G A PCDHGB7 Silent p.A541A 0.12 TCGA-WY-A85A-01 X 76855051 76855051 T G ATRX Splice_Site p.X1929_splice 0.77 TCGA-WY-A85B-01 11 30033344 30033344 C G KCNA4 Missense_Mutation p.W294C 0.07 deleterious(0) probably_damaging(0.992) TCGA-WY-A85B-01 11 4903765 4903765 C T OR51T1 Silent p.D239D 0.10 TCGA-WY-A85B-01 12 52312879 52312879 A G ACVRL1 Missense_Mutation p.N453D 0.07 deleterious(0) probably_damaging(0.981) TCGA-WY-A85B-01 15 100339848 100339848 C T DNM1P46 RNA 0.16 TCGA-WY-A85B-01 17 17698750 17698750 G A RAI1 Missense_Mutation p.E830K 0.39 deleterious(0.01) benign(0.054) TCGA-WY-A85B-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.86 deleterious(0) probably_damaging(0.998) TCGA-WY-A85B-01 1 12907676 12907676 C T HNRNPCL1 Missense_Mutation p.G156D 0.05 tolerated(0.3) possibly_damaging(0.623) TCGA-WY-A85B-01 1 215368303 215368303 C T KCNK2 Silent p.S277S 0.12 TCGA-WY-A85B-01 22 22285639 22285639 C T PPM1F Missense_Mutation p.V258M 0.52 deleterious(0) probably_damaging(0.999) TCGA-WY-A85B-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WY-A85B-01 2 24222772 24222772 A G UBXN2A 3'UTR 0.44 TCGA-WY-A85B-01 3 112969621 112969621 G T BOC Missense_Mutation p.C106F 0.15 deleterious(0) probably_damaging(1) TCGA-WY-A85B-01 3 121838286 121838287 - A CD86 Frame_Shift_Ins p.I301Nfs*5 0.32 TCGA-WY-A85B-01 3 158399981 158399981 T - GFM1 Intron 0.44 TCGA-WY-A85B-01 4 90816388 90816388 G T MMRN1 Missense_Mutation p.S89I 0.07 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-WY-A85B-01 5 115142186 115142186 T C CDO1 Missense_Mutation p.I145V 0.30 tolerated(0.4) benign(0.388) TCGA-WY-A85B-01 8 20107578 20107578 G A LZTS1 Silent p.A482A 0.19 TCGA-WY-A85B-01 8 69434080 69434080 G A C8orf34 Missense_Mutation p.G271E 0.33 tolerated(0.06) probably_damaging(1) TCGA-WY-A85B-01 X 76845304 76845304 C T ATRX Missense_Mutation p.G2073S 0.91 benign(0.189) TCGA-WY-A85C-01 10 105765409 105765410 AC T SLK Frame_Shift_Del p.T814* 0.34 TCGA-WY-A85C-01 10 124647982 124647982 A G RP11-564D11.3 RNA 0.27 TCGA-WY-A85C-01 11 118513008 118513021 CAGTGGTACCAGGA - PHLDB1 Frame_Shift_Del p.Q925Afs*73 0.26 TCGA-WY-A85C-01 11 6898108 6898108 T C OR10A4 Missense_Mutation p.V77A 0.06 tolerated(0.13) benign(0.047) TCGA-WY-A85C-01 12 112605177 112605177 G A HECTD4 Nonsense_Mutation p.Q4014* 0.42 TCGA-WY-A85C-01 12 6690297 6690297 C T CHD4 Missense_Mutation p.V1608I 0.41 tolerated(0.19) benign(0.003) TCGA-WY-A85C-01 12 69210669 69210669 A C MDM2 Silent p.S84S 0.43 TCGA-WY-A85C-01 13 107165059 107165059 T G EFNB2 Missense_Mutation p.Y75S 0.05 deleterious(0) probably_damaging(0.945) TCGA-WY-A85C-01 13 29600725 29600725 G T MTUS2 Missense_Mutation p.K640N 0.33 deleterious(0.03) possibly_damaging(0.787) TCGA-WY-A85C-01 15 43038404 43038404 G C TTBK2 Missense_Mutation p.F1108L 0.67 tolerated(1) benign(0.01) TCGA-WY-A85C-01 16 49433165 49433165 C T C16orf78 Silent p.T258T 0.44 TCGA-WY-A85C-01 17 10212891 10212891 C T MYH13 Missense_Mutation p.R1638H 0.33 deleterious(0.01) possibly_damaging(0.817) TCGA-WY-A85C-01 17 16723981 16723981 C T AC022596.6 RNA 0.21 TCGA-WY-A85C-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.32 tolerated(0.11) benign(0.308) TCGA-WY-A85C-01 17 7579716 7579716 G - TP53 Frame_Shift_Del p.P27Lfs*17 0.34 TCGA-WY-A85C-01 19 4222733 4222733 G A ANKRD24 Missense_Mutation p.A1080T 0.20 tolerated(0.4) possibly_damaging(0.53) TCGA-WY-A85C-01 1 165532816 165532816 C T LRRC52 Nonsense_Mutation p.R233* 0.29 TCGA-WY-A85C-01 1 184777346 184777346 A G FAM129A Silent p.L399L 0.11 TCGA-WY-A85C-01 1 3551833 3551833 T C WRAP73 Missense_Mutation p.D210G 0.53 deleterious(0.05) benign(0.178) TCGA-WY-A85C-01 1 86591609 86591609 A T COL24A1 Nonsense_Mutation p.L137* 0.41 TCGA-WY-A85C-01 21 11038985 11038985 G T BAGE2 RNA 0.08 TCGA-WY-A85C-01 21 44486353 44486353 C T CBS Missense_Mutation p.G151R 0.07 deleterious(0) probably_damaging(1) TCGA-WY-A85C-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.48 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-WY-A85C-01 3 119196233 119196233 C T POGLUT1 Nonsense_Mutation p.R132* 0.68 TCGA-WY-A85C-01 4 140188136 140188136 T C MGARP Missense_Mutation p.I114V 0.10 tolerated(1) benign(0) TCGA-WY-A85C-01 4 186263216 186263216 G A SNX25 Nonsense_Mutation p.W547* 0.37 TCGA-WY-A85C-01 4 187006056 187006056 A G TLR3 3'UTR 0.53 TCGA-WY-A85C-01 4 26483533 26483533 G A CCKAR Silent p.Y338Y 0.05 TCGA-WY-A85C-01 5 106716914 106716914 G A EFNA5 3'UTR 0.36 TCGA-WY-A85C-01 5 168310292 168310292 C T SLIT3 Missense_Mutation p.G155S 0.43 deleterious(0.04) probably_damaging(1) TCGA-WY-A85C-01 5 55083767 55083767 G T DDX4 Missense_Mutation p.V371L 0.47 tolerated(0.05) probably_damaging(0.921) TCGA-WY-A85C-01 5 88018369 88018369 G A MEF2C 3'UTR 0.40 TCGA-WY-A85C-01 6 117130667 117130667 C A GPRC6A Missense_Mutation p.C103F 0.43 deleterious(0) probably_damaging(1) TCGA-WY-A85C-01 6 117663696 117663696 G C ROS1 Missense_Mutation p.D1512E 0.38 tolerated(1) benign(0) TCGA-WY-A85C-01 7 143792751 143792751 T A OR2A12 Missense_Mutation p.F184Y 0.07 deleterious(0) benign(0.433) TCGA-WY-A85C-01 7 21781718 21781718 C - DNAH11 Frame_Shift_Del p.L2705Yfs*13 0.25 TCGA-WY-A85C-01 8 95272441 95272441 A G GEM Silent p.G97G 0.32 TCGA-WY-A85C-01 X 79286146 79286146 G A TBX22 Missense_Mutation p.V367I 0.86 tolerated(0.72) benign(0.001) TCGA-WY-A85D-01 10 75557164 75557165 - A ZSWIM8 Frame_Shift_Ins p.T1156Nfs*5 0.37 TCGA-WY-A85D-01 10 8115720 8115720 A G GATA3 Missense_Mutation p.M357V 0.19 deleterious(0) possibly_damaging(0.734) TCGA-WY-A85D-01 11 1219154 1219154 G A MUC5AC RNA 0.36 TCGA-WY-A85D-01 11 55405900 55405900 G A OR4P4 Missense_Mutation p.V23I 0.35 tolerated(1) benign(0) TCGA-WY-A85D-01 11 55658975 55658975 T C TRIM51 Missense_Mutation p.V409A 0.39 deleterious(0) probably_damaging(0.928) TCGA-WY-A85D-01 11 56086694 56086694 G C OR8K3 Missense_Mutation p.W304C 0.29 deleterious_low_confidence(0.02) benign(0.043) TCGA-WY-A85D-01 11 58480360 58480360 C A GLYAT Splice_Site p.X64_splice 0.19 TCGA-WY-A85D-01 12 133220429 133220429 C G POLE Missense_Mutation p.E1428D 0.19 deleterious(0.01) probably_damaging(0.927) TCGA-WY-A85D-01 12 98927085 98927085 A G TMPO Silent p.Q350Q 0.06 TCGA-WY-A85D-01 14 64656884 64656884 A T SYNE2 Silent p.A5989A 0.33 TCGA-WY-A85D-01 14 74083670 74083670 C T ACOT6 5'UTR 0.45 TCGA-WY-A85D-01 15 37329146 37329146 T G MEIS2 Missense_Mutation p.N257H 0.40 tolerated(0.1) benign(0.106) TCGA-WY-A85D-01 16 2871093 2871093 G A PRSS21 Missense_Mutation p.G230R 0.38 deleterious(0.03) benign(0.159) TCGA-WY-A85D-01 16 66945164 66945164 C T CDH16 Silent p.G615G 0.43 TCGA-WY-A85D-01 16 76389360 76389360 T C CNTNAP4 Silent p.S89S 0.39 TCGA-WY-A85D-01 17 4442611 4442611 A G MYBBP1A Intron 0.55 TCGA-WY-A85D-01 17 7577108 7577108 C T TP53 Missense_Mutation p.C277Y 0.46 deleterious(0) probably_damaging(0.949) TCGA-WY-A85D-01 17 7578508 7578508 C T TP53 Missense_Mutation p.C141Y 0.50 deleterious(0) probably_damaging(1) TCGA-WY-A85D-01 18 24436242 24436242 A G AQP4 Missense_Mutation p.I302T 0.37 deleterious_low_confidence(0.03) benign(0.006) TCGA-WY-A85D-01 19 17373549 17373549 T C USHBP1 Missense_Mutation p.T152A 0.30 tolerated(0.76) benign(0.021) TCGA-WY-A85D-01 19 44103081 44103081 G A ZNF576 Missense_Mutation p.V62M 0.08 deleterious(0.04) probably_damaging(0.997) TCGA-WY-A85D-01 19 48248903 48248903 G T GLTSCR2 Silent p.S29S 0.38 TCGA-WY-A85D-01 19 53762837 53762837 T - VN1R2 3'UTR 0.26 TCGA-WY-A85D-01 19 56538685 56538685 C T NLRP5 Silent p.D362D 0.41 TCGA-WY-A85D-01 1 118640423 118640423 G C SPAG17 Missense_Mutation p.T294S 0.42 tolerated(0.17) benign(0.204) TCGA-WY-A85D-01 1 158450564 158450564 G A OR10R2 Silent p.T299T 0.38 TCGA-WY-A85D-01 1 27277235 27277235 T C C1orf172 Missense_Mutation p.Q351R 0.10 tolerated(0.07) possibly_damaging(0.794) TCGA-WY-A85D-01 1 42870214 42870214 G A RIMKLA Missense_Mutation p.E143K 0.39 tolerated(0.16) possibly_damaging(0.794) TCGA-WY-A85D-01 1 93744082 93744082 T G CCDC18 3'UTR 0.37 TCGA-WY-A85D-01 22 20783912 20783912 G A SCARF2 Silent p.G445G 0.08 TCGA-WY-A85D-01 2 112596041 112596041 T C ANAPC1 Missense_Mutation p.R697G 0.39 deleterious(0) probably_damaging(0.967) TCGA-WY-A85D-01 2 114369647 114369647 T C RPL23AP7 RNA 0.37 TCGA-WY-A85D-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-WY-A85D-01 2 60687797 60687797 G T BCL11A Silent p.V750V 0.39 TCGA-WY-A85D-01 2 62449961 62449961 T A B3GNT2 Missense_Mutation p.S202R 0.30 deleterious(0.01) probably_damaging(0.936) TCGA-WY-A85D-01 2 89399378 89399378 A G IGKV1-16 Missense_Mutation p.Y109H 0.32 deleterious(0.03) benign(0.246) TCGA-WY-A85D-01 4 162402315 162402315 C T FSTL5 Missense_Mutation p.V489I 0.36 tolerated(0.71) possibly_damaging(0.891) TCGA-WY-A85D-01 4 25005383 25005383 G C LGI2 Missense_Mutation p.S443C 0.40 deleterious(0) probably_damaging(0.999) TCGA-WY-A85D-01 4 99812468 99812468 A C EIF4E Missense_Mutation p.F47L 0.48 deleterious(0.03) probably_damaging(0.925) TCGA-WY-A85D-01 5 94805499 94805499 C T TTC37 Missense_Mutation p.R1494H 0.29 tolerated(0.35) benign(0.003) TCGA-WY-A85D-01 6 10898343 10898343 G A SYCP2L Missense_Mutation p.A146T 0.36 deleterious(0) probably_damaging(0.928) TCGA-WY-A85D-01 6 111912849 111912849 C T TRAF3IP2 Silent p.A147A 0.08 TCGA-WY-A85D-01 6 150005421 150005421 C T LATS1 Nonsense_Mutation p.W268* 0.40 TCGA-WY-A85D-01 6 41743209 41743209 G A FRS3 Silent p.Y67Y 0.30 TCGA-WY-A85D-01 6 43418746 43418746 C T DLK2 Missense_Mutation p.R228Q 0.31 tolerated(0.26) possibly_damaging(0.842) TCGA-WY-A85D-01 7 20766690 20766690 C T ABCB5 Missense_Mutation p.R885C 0.11 deleterious(0.01) probably_damaging(0.968) TCGA-WY-A85D-01 9 79959998 79959998 G C VPS13A Missense_Mutation p.G2410A 0.11 deleterious(0) probably_damaging(1) TCGA-WY-A85D-01 X 76814253 76814253 G A ATRX Nonsense_Mutation p.R2131* 0.85 TCGA-WY-A85E-01 10 100453669 100453669 A T HPSE2 Missense_Mutation p.V331D 0.41 deleterious(0) probably_damaging(0.993) TCGA-WY-A85E-01 10 81921729 81921729 G A ANXA11 Missense_Mutation p.A381V 0.09 tolerated(0.2) possibly_damaging(0.744) TCGA-WY-A85E-01 10 82122275 82122275 C T DYDC2 Missense_Mutation p.P40S 0.47 deleterious(0) probably_damaging(1) TCGA-WY-A85E-01 11 5411068 5411068 T C OR51M1 Missense_Mutation p.I147T 0.14 deleterious(0) possibly_damaging(0.901) TCGA-WY-A85E-01 11 5729464 5729464 C T TRIM22 Nonsense_Mutation p.R279* 0.15 TCGA-WY-A85E-01 11 57319798 57319798 G A UBE2L6 3'UTR 0.10 TCGA-WY-A85E-01 11 57958704 57958704 G A OR9Q2 Missense_Mutation p.V248I 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-WY-A85E-01 11 67234993 67234993 C T TMEM134 Missense_Mutation p.R103H 0.23 tolerated(0.13) benign(0.091) TCGA-WY-A85E-01 12 85257323 85257323 A T SLC6A15 Nonsense_Mutation p.Y571* 0.38 TCGA-WY-A85E-01 14 21109228 21109228 A G OR6S1 Missense_Mutation p.L208P 0.06 tolerated(0.08) probably_damaging(0.952) TCGA-WY-A85E-01 14 24542245 24542245 C A CPNE6 Silent p.R34R 0.10 TCGA-WY-A85E-01 14 37145747 37145747 T A PAX9 3'UTR 0.41 TCGA-WY-A85E-01 15 65425256 65425256 C T PDCD7 Silent p.K288K 0.13 TCGA-WY-A85E-01 15 65425262 65425262 C G PDCD7 Missense_Mutation p.E286D 0.14 tolerated(0.09) benign(0.183) TCGA-WY-A85E-01 15 78474351 78474351 C T ACSBG1 Nonsense_Mutation p.W344* 0.36 TCGA-WY-A85E-01 15 89403664 89403664 A C ACAN Missense_Mutation p.N2314H 0.19 deleterious(0.01) probably_damaging(0.939) TCGA-WY-A85E-01 16 1498451 1498451 G A CLCN7 Missense_Mutation p.R640W 0.28 deleterious(0.01) probably_damaging(0.948) TCGA-WY-A85E-01 16 20448432 20448432 G A ACSM5 Missense_Mutation p.R456Q 0.05 deleterious(0.02) benign(0.413) TCGA-WY-A85E-01 16 21049090 21049090 A G DNAH3 Missense_Mutation p.L1648P 0.16 deleterious(0) probably_damaging(1) TCGA-WY-A85E-01 16 46744669 46744669 G C MYLK3 Missense_Mutation p.T716R 0.07 deleterious(0) probably_damaging(0.998) TCGA-WY-A85E-01 17 44851146 44851146 G C WNT3 Silent p.A70A 0.10 TCGA-WY-A85E-01 17 56565486 56565486 C A HSF5 Silent p.L50L 0.37 TCGA-WY-A85E-01 17 57465703 57465703 C T YPEL2 Nonsense_Mutation p.Q45* 0.16 TCGA-WY-A85E-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.94 deleterious(0) probably_damaging(1) TCGA-WY-A85E-01 18 29691839 29691839 T C RNF138 Missense_Mutation p.I78T 0.05 tolerated(0.58) benign(0.001) TCGA-WY-A85E-01 18 47812492 47812492 C T CXXC1 Missense_Mutation p.R120H 0.14 deleterious(0) benign(0.141) TCGA-WY-A85E-01 19 35502430 35502430 G A GRAMD1A Missense_Mutation p.R193H 0.06 deleterious(0) possibly_damaging(0.826) TCGA-WY-A85E-01 19 39369942 39369942 C T SIRT2 Silent p.L341L 0.13 TCGA-WY-A85E-01 19 48533797 48533797 G C CABP5 3'UTR 0.14 TCGA-WY-A85E-01 19 52129289 52129289 G A SIGLEC5 Missense_Mutation p.T487I 0.21 deleterious(0.01) benign(0.167) TCGA-WY-A85E-01 19 53454252 53454252 C T ZNF816 Missense_Mutation p.C259Y 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-WY-A85E-01 19 9066862 9066862 T G MUC16 Missense_Mutation p.S6862R 0.15 unknown(0) TCGA-WY-A85E-01 1 14105561 14105561 T G PRDM2 Missense_Mutation p.L424R 0.11 possibly_damaging(0.791) TCGA-WY-A85E-01 1 154422442 154422442 C T IL6R Missense_Mutation p.A351V 0.09 tolerated(0.16) benign(0.018) TCGA-WY-A85E-01 1 155317506 155317506 G A ASH1L Missense_Mutation p.R2582C 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WY-A85E-01 1 179478532 179478532 T A AXDND1 Silent p.L830L 0.16 TCGA-WY-A85E-01 1 206943190 206943190 T C IL10 Missense_Mutation p.K143R 0.51 tolerated(0.05) benign(0.398) TCGA-WY-A85E-01 1 228476495 228476495 C T OBSCN Silent p.C3844C 0.15 TCGA-WY-A85E-01 1 97547949 97547949 A C DPYD Missense_Mutation p.I948M 0.05 deleterious(0) probably_damaging(0.975) TCGA-WY-A85E-01 1 9783245 9783245 G A PIK3CD Missense_Mutation p.R830H 0.29 tolerated(0.47) benign(0.001) TCGA-WY-A85E-01 2 137852651 137852651 G T THSD7B Missense_Mutation p.A387S 0.10 tolerated(0.4) possibly_damaging(0.546) TCGA-WY-A85E-01 2 1914018 1914018 A G MYT1L Missense_Mutation p.V602A 0.34 tolerated(0.05) probably_damaging(0.97) TCGA-WY-A85E-01 2 201303981 201303981 A T SPATS2L Silent p.T194T 0.31 TCGA-WY-A85E-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-WY-A85E-01 2 21230915 21230915 T C APOB Missense_Mutation p.H2942R 0.07 probably_damaging(0.991) TCGA-WY-A85E-01 2 96799705 96799705 G A ASTL Silent p.Y112Y 0.09 TCGA-WY-A85E-01 3 108780872 108780872 A C MORC1 Missense_Mutation p.V310G 0.24 deleterious(0.05) benign(0.014) TCGA-WY-A85E-01 3 178928226 178928226 C T PIK3CA Missense_Mutation p.P471L 0.07 deleterious(0) probably_damaging(0.92) TCGA-WY-A85E-01 3 38519421 38519421 C T ACVR2B Silent p.N110N 0.48 TCGA-WY-A85E-01 3 3887104 3887104 A G LRRN1 Missense_Mutation p.Q260R 0.42 tolerated(0.32) benign(0.003) TCGA-WY-A85E-01 3 52539037 52539037 A G STAB1 Missense_Mutation p.K466E 0.06 tolerated(0.75) benign(0.004) TCGA-WY-A85E-01 4 111539467 111539467 C A PITX2 Silent p.A263A 0.17 TCGA-WY-A85E-01 4 47605646 47605646 G A CORIN Silent p.I860I 0.15 TCGA-WY-A85E-01 4 71115134 71115134 C A CSN3 Silent p.T169T 0.33 TCGA-WY-A85E-01 5 180432371 180432371 G A BTNL3 Silent p.K300K 0.31 TCGA-WY-A85E-01 5 38435297 38435297 A G EGFLAM Missense_Mutation p.Y742C 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-WY-A85E-01 5 40681653 40681653 C T PTGER4 Silent p.Y186Y 0.08 TCGA-WY-A85E-01 5 52355772 52355772 T C ITGA2 Silent p.H414H 0.38 TCGA-WY-A85E-01 6 117130560 117130560 T C GPRC6A Missense_Mutation p.R139G 0.07 tolerated(0.06) possibly_damaging(0.497) TCGA-WY-A85E-01 6 26158800 26158800 A C HIST1H2BD Intron 0.28 TCGA-WY-A85E-01 6 81053471 81053471 C G BCKDHB Missense_Mutation p.P377A 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-WY-A85E-01 7 114619720 114619720 C A MDFIC Missense_Mutation p.P235H 0.19 deleterious(0) probably_damaging(1) TCGA-WY-A85E-01 7 120740100 120740100 G T CPED1 Silent p.S290S 0.24 TCGA-WY-A85E-01 7 128493627 128493627 C - FLNC Frame_Shift_Del p.G2106Afs*21 0.18 TCGA-WY-A85E-01 7 27140265 27140265 A G HOXA2 3'UTR 0.17 TCGA-WY-A85E-01 7 34888182 34888182 C A NPSR1 Missense_Mutation p.A311D 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-WY-A85E-01 7 37889884 37889884 C T NME8 Nonsense_Mutation p.R6* 0.05 TCGA-WY-A85E-01 8 24775141 24775141 G T NEFM Missense_Mutation p.K591N 0.15 tolerated(0.06) unknown(0) TCGA-WY-A85E-01 8 38646271 38646271 C T TACC1 Nonsense_Mutation p.R71* 0.23 TCGA-WY-A85E-01 8 72970013 72970013 A G TRPA1 Silent p.S344S 0.36 TCGA-WY-A85E-01 8 95683729 95683729 C A ESRP1 Missense_Mutation p.P428T 0.35 deleterious(0.04) probably_damaging(1) TCGA-WY-A85E-01 9 101056066 101056066 C A GABBR2 Splice_Site p.X887_splice 0.22 TCGA-WY-A85E-01 9 138391685 138391685 A G C9orf116 Missense_Mutation p.C5R 0.31 tolerated(0.57) benign(0) TCGA-WY-A85E-01 9 19116192 19116192 T A PLIN2 3'UTR 0.66 TCGA-WY-A85E-01 9 33442015 33442015 G A AQP3 3'UTR 0.06 TCGA-WY-A85E-01 X 106185255 106185255 T A MORC4 Missense_Mutation p.E858V 0.11 deleterious(0) possibly_damaging(0.827) TCGA-WY-A85E-01 X 118223155 118223155 G T KIAA1210 Missense_Mutation p.Q680K 0.15 tolerated(0.33) possibly_damaging(0.546) TCGA-WY-A85E-01 X 125299773 125299773 C T DCAF12L2 Silent p.P45P 0.33 TCGA-WY-A85E-01 X 53277942 53277942 A G IQSEC2 Missense_Mutation p.L807P 0.39 deleterious(0) probably_damaging(1) TCGA-WY-A85E-01 X 54783821 54783821 G C ITIH6 Missense_Mutation p.P896A 0.22 tolerated(0.46) benign(0.039) TCGA-WY-A85E-01 X 76938297 76938297 A T ATRX Nonsense_Mutation p.Y817* 0.41